Query 003889
Match_columns 788
No_of_seqs 472 out of 2680
Neff 7.9
Searched_HMMs 29240
Date Mon Mar 25 07:21:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003889.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003889hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3org_A CMCLC; transporter, tra 100.0 3.1E-87 1.1E-91 788.3 44.3 605 71-759 6-627 (632)
2 3nd0_A SLL0855 protein; CLC fa 100.0 2.8E-68 9.7E-73 601.0 41.6 439 45-567 2-443 (466)
3 1ots_A Voltage-gated CLC-type 100.0 4.3E-66 1.5E-70 585.5 44.3 415 73-568 33-452 (465)
4 4ene_A CLC-EC1, H(+)/CL(-) exc 100.0 2.2E-65 7.4E-70 576.3 44.7 411 75-567 19-436 (446)
5 2d4z_A Chloride channel protei 99.8 1.1E-20 3.6E-25 196.5 14.3 180 571-757 1-246 (250)
6 4esy_A CBS domain containing m 99.7 4.1E-18 1.4E-22 166.8 10.9 150 580-758 14-163 (170)
7 3lv9_A Putative transporter; C 99.7 2.2E-17 7.4E-22 157.6 13.5 125 580-758 19-146 (148)
8 3lhh_A CBS domain protein; str 99.7 3.4E-17 1.2E-21 160.7 13.9 129 580-762 38-169 (172)
9 3i8n_A Uncharacterized protein 99.7 2.4E-17 8.1E-22 153.7 11.0 125 581-757 3-129 (130)
10 3kpb_A Uncharacterized protein 99.7 6.5E-17 2.2E-21 148.5 13.3 120 584-757 1-120 (122)
11 3lfr_A Putative metal ION tran 99.7 2E-17 6.8E-22 155.7 9.8 128 583-762 2-132 (136)
12 3jtf_A Magnesium and cobalt ef 99.7 3.4E-17 1.2E-21 152.5 10.4 123 582-759 3-128 (129)
13 3oco_A Hemolysin-like protein 99.7 4.7E-17 1.6E-21 156.3 11.5 129 581-762 17-148 (153)
14 3nqr_A Magnesium and cobalt ef 99.7 2.6E-17 9E-22 152.8 9.0 122 583-757 2-126 (127)
15 3fhm_A Uncharacterized protein 99.7 1.5E-16 5.1E-21 154.8 13.7 138 574-761 14-154 (165)
16 3hf7_A Uncharacterized CBS-dom 99.7 8.7E-17 3E-21 150.1 11.3 126 583-758 1-128 (130)
17 3gby_A Uncharacterized protein 99.7 1E-16 3.5E-21 148.9 11.4 125 582-758 3-127 (128)
18 2ef7_A Hypothetical protein ST 99.7 2.2E-16 7.4E-21 147.4 13.4 126 582-759 2-127 (133)
19 2rih_A Conserved protein with 99.7 4.2E-16 1.4E-20 147.2 15.1 122 583-756 4-127 (141)
20 3ocm_A Putative membrane prote 99.7 2.3E-16 7.8E-21 155.1 12.5 129 581-764 33-164 (173)
21 3k6e_A CBS domain protein; str 99.7 1.6E-16 5.4E-21 153.5 10.4 128 584-759 15-144 (156)
22 2p9m_A Hypothetical protein MJ 99.7 2.7E-16 9.4E-21 147.6 11.5 127 580-757 4-136 (138)
23 1o50_A CBS domain-containing p 99.7 4.7E-16 1.6E-20 149.8 13.4 143 579-759 11-155 (157)
24 2yzi_A Hypothetical protein PH 99.7 6.5E-16 2.2E-20 145.1 13.9 128 581-760 4-132 (138)
25 3lqn_A CBS domain protein; csg 99.7 3.9E-16 1.3E-20 149.0 12.0 137 577-760 8-146 (150)
26 3k2v_A Putative D-arabinose 5- 99.7 4.2E-16 1.4E-20 148.8 11.8 121 583-754 27-149 (149)
27 4gqw_A CBS domain-containing p 99.6 3.5E-16 1.2E-20 149.1 10.7 141 582-759 3-145 (152)
28 1pbj_A Hypothetical protein; s 99.6 1.2E-15 4E-20 140.6 13.4 122 584-757 1-122 (125)
29 3fv6_A YQZB protein; CBS domai 99.6 1.1E-15 3.8E-20 147.6 13.6 128 579-757 12-144 (159)
30 1y5h_A Hypothetical protein RV 99.6 5.7E-16 2E-20 144.5 10.7 126 581-757 5-131 (133)
31 3oi8_A Uncharacterized protein 99.6 2.4E-16 8.3E-21 151.9 8.3 119 581-753 35-156 (156)
32 3sl7_A CBS domain-containing p 99.6 2.6E-16 8.9E-21 154.7 8.4 153 583-758 3-157 (180)
33 3kxr_A Magnesium transporter, 99.6 7.3E-16 2.5E-20 155.7 11.0 126 582-763 52-180 (205)
34 2rc3_A CBS domain; in SITU pro 99.6 2.9E-15 1E-19 140.2 13.9 123 585-758 7-132 (135)
35 2o16_A Acetoin utilization pro 99.6 1.1E-15 3.8E-20 147.8 11.1 134 582-758 3-136 (160)
36 2emq_A Hypothetical conserved 99.6 1.8E-15 6E-20 145.5 11.8 135 580-761 7-143 (157)
37 3ctu_A CBS domain protein; str 99.6 2E-15 7E-20 145.1 11.1 132 581-760 12-145 (156)
38 1pvm_A Conserved hypothetical 99.6 4.9E-15 1.7E-19 146.8 13.9 126 583-757 8-133 (184)
39 2uv4_A 5'-AMP-activated protei 99.6 3.5E-15 1.2E-19 142.9 11.8 134 579-757 18-151 (152)
40 4fry_A Putative signal-transdu 99.6 5.1E-15 1.7E-19 142.4 12.8 127 584-761 7-139 (157)
41 2nyc_A Nuclear protein SNF4; b 99.6 4.4E-15 1.5E-19 140.1 12.0 128 581-757 5-141 (144)
42 1yav_A Hypothetical protein BS 99.6 1.5E-15 5E-20 146.6 8.7 133 581-760 11-145 (159)
43 2j9l_A Chloride channel protei 99.6 4.1E-15 1.4E-19 146.8 12.0 155 579-759 6-167 (185)
44 2pfi_A Chloride channel protei 99.6 5.1E-15 1.7E-19 143.1 10.8 132 581-757 10-147 (164)
45 3l2b_A Probable manganase-depe 99.5 1.7E-14 5.9E-19 149.6 12.2 168 583-756 6-243 (245)
46 1vr9_A CBS domain protein/ACT 99.5 1.9E-14 6.5E-19 146.2 10.9 120 583-758 12-131 (213)
47 2oux_A Magnesium transporter; 99.5 9.9E-15 3.4E-19 155.2 9.1 125 582-762 135-264 (286)
48 3pc3_A CG1753, isoform A; CBS, 99.5 3.1E-14 1.1E-18 164.2 13.2 151 557-759 357-513 (527)
49 2yvy_A MGTE, Mg2+ transporter 99.5 5.5E-14 1.9E-18 148.8 13.0 125 582-762 133-262 (278)
50 3ddj_A CBS domain-containing p 99.5 3.6E-14 1.2E-18 151.2 10.5 136 583-762 155-290 (296)
51 2yzq_A Putative uncharacterize 99.5 8E-14 2.7E-18 147.1 11.4 156 583-758 125-280 (282)
52 3kh5_A Protein MJ1225; AMPK, A 99.5 7.3E-14 2.5E-18 147.0 10.3 132 584-755 148-279 (280)
53 3t4n_C Nuclear protein SNF4; C 99.5 1.8E-13 6E-18 147.7 11.9 127 583-758 186-321 (323)
54 3ddj_A CBS domain-containing p 99.4 2.8E-13 9.5E-18 144.2 10.8 122 583-756 92-213 (296)
55 2zy9_A Mg2+ transporter MGTE; 99.4 2.2E-13 7.4E-18 154.7 9.9 122 582-759 153-279 (473)
56 3kh5_A Protein MJ1225; AMPK, A 99.4 1.2E-12 4.2E-17 137.6 15.0 123 583-757 83-205 (280)
57 2qrd_G Protein C1556.08C; AMPK 99.4 1.2E-12 4.1E-17 141.8 13.6 129 583-760 181-318 (334)
58 2yzq_A Putative uncharacterize 99.4 4.7E-13 1.6E-17 141.1 9.6 118 584-757 1-119 (282)
59 2v8q_E 5'-AMP-activated protei 99.3 3.3E-12 1.1E-16 138.1 12.1 143 579-756 30-176 (330)
60 2v8q_E 5'-AMP-activated protei 99.3 3.9E-12 1.3E-16 137.6 11.4 133 584-759 190-325 (330)
61 4ene_A CLC-EC1, H(+)/CL(-) exc 99.3 1.8E-11 6.1E-16 137.6 17.1 185 78-284 239-423 (446)
62 1ots_A Voltage-gated CLC-type 99.3 2.6E-11 8.7E-16 137.1 17.2 185 77-283 253-437 (465)
63 3t4n_C Nuclear protein SNF4; C 99.3 1.2E-11 4.1E-16 133.2 12.4 131 585-758 115-249 (323)
64 1zfj_A Inosine monophosphate d 99.3 1.2E-11 3.9E-16 141.6 12.9 118 585-757 91-211 (491)
65 3nd0_A SLL0855 protein; CLC fa 99.3 2.7E-11 9.3E-16 136.5 14.8 181 78-283 249-429 (466)
66 4fxs_A Inosine-5'-monophosphat 99.3 1.1E-12 3.9E-17 149.1 2.8 118 584-756 89-208 (496)
67 3usb_A Inosine-5'-monophosphat 99.3 7.1E-12 2.4E-16 143.1 9.3 121 584-757 113-234 (511)
68 1jcn_A Inosine monophosphate d 99.2 1.7E-14 5.9E-19 165.8 -13.0 179 524-757 47-233 (514)
69 1me8_A Inosine-5'-monophosphat 99.2 9.7E-13 3.3E-17 150.4 -0.1 124 581-758 93-222 (503)
70 1vrd_A Inosine-5'-monophosphat 99.2 1.4E-12 4.8E-17 149.2 0.1 120 584-758 95-216 (494)
71 4avf_A Inosine-5'-monophosphat 99.2 2.7E-12 9.1E-17 146.0 0.2 117 584-756 88-206 (490)
72 2qrd_G Protein C1556.08C; AMPK 99.2 1.6E-10 5.4E-15 125.0 13.3 128 587-758 110-244 (334)
73 4af0_A Inosine-5'-monophosphat 99.1 1.4E-11 4.7E-16 136.9 0.8 116 588-756 142-257 (556)
74 2cu0_A Inosine-5'-monophosphat 99.0 5.4E-11 1.8E-15 135.6 -0.5 114 585-756 94-207 (486)
75 3org_A CMCLC; transporter, tra 98.8 4.1E-08 1.4E-12 115.3 14.7 180 78-284 237-424 (632)
76 3ghd_A A cystathionine beta-sy 98.5 2.6E-07 9E-12 75.8 7.8 47 594-645 1-47 (70)
77 4esy_A CBS domain containing m 98.5 1.6E-07 5.3E-12 91.2 7.5 59 699-757 18-76 (170)
78 3ghd_A A cystathionine beta-sy 98.4 5.6E-07 1.9E-11 73.8 7.4 48 709-757 2-49 (70)
79 3fio_A A cystathionine beta-sy 98.3 1.4E-06 4.9E-11 70.8 7.4 49 709-758 2-50 (70)
80 1vr9_A CBS domain protein/ACT 98.3 8.9E-07 3E-11 89.3 7.0 60 583-647 71-130 (213)
81 3l2b_A Probable manganase-depe 98.2 1.4E-06 4.8E-11 89.7 8.0 61 699-759 7-67 (245)
82 3k2v_A Putative D-arabinose 5- 98.2 2E-06 6.9E-11 81.2 7.5 60 699-758 28-89 (149)
83 3gby_A Uncharacterized protein 98.2 2E-06 6.8E-11 78.9 6.9 59 699-758 5-63 (128)
84 2yzi_A Hypothetical protein PH 98.2 4.9E-06 1.7E-10 77.1 8.9 56 699-754 7-62 (138)
85 2o16_A Acetoin utilization pro 98.2 2.3E-06 7.8E-11 81.9 6.7 58 699-756 5-62 (160)
86 3fio_A A cystathionine beta-sy 98.1 6.6E-06 2.3E-10 66.8 8.3 47 595-646 2-48 (70)
87 3kpb_A Uncharacterized protein 98.1 1.8E-06 6.3E-11 78.1 5.1 57 701-757 3-59 (122)
88 2rih_A Conserved protein with 98.1 4.3E-06 1.5E-10 78.0 7.8 59 699-757 5-65 (141)
89 3lv9_A Putative transporter; C 98.1 3.4E-06 1.2E-10 79.4 6.8 58 699-756 23-83 (148)
90 3nqr_A Magnesium and cobalt ef 98.1 2.7E-06 9.2E-11 77.9 5.6 57 701-757 5-64 (127)
91 3fv6_A YQZB protein; CBS domai 98.1 5.7E-06 1.9E-10 79.0 8.1 57 699-756 17-73 (159)
92 1pbj_A Hypothetical protein; s 98.1 3.3E-06 1.1E-10 76.7 5.8 56 701-757 3-58 (125)
93 2p9m_A Hypothetical protein MJ 98.1 5.3E-06 1.8E-10 76.8 7.3 58 699-756 8-66 (138)
94 3jtf_A Magnesium and cobalt ef 98.1 3.9E-06 1.3E-10 77.1 6.3 57 700-756 6-65 (129)
95 2d4z_A Chloride channel protei 98.1 4.4E-06 1.5E-10 86.3 7.2 58 699-756 13-72 (250)
96 3lfr_A Putative metal ION tran 98.0 6.8E-06 2.3E-10 76.3 7.0 56 701-756 5-63 (136)
97 2ef7_A Hypothetical protein ST 98.0 1.1E-05 3.9E-10 74.1 8.4 57 700-757 5-61 (133)
98 3lqn_A CBS domain protein; csg 98.0 4E-06 1.4E-10 79.0 5.2 59 699-757 15-75 (150)
99 4gqw_A CBS domain-containing p 98.0 7.6E-06 2.6E-10 76.9 6.5 56 699-754 5-62 (152)
100 2emq_A Hypothetical conserved 98.0 7.6E-06 2.6E-10 77.6 6.5 59 699-757 11-71 (157)
101 3ctu_A CBS domain protein; str 98.0 5.5E-06 1.9E-10 78.7 5.5 57 700-756 16-74 (156)
102 3lhh_A CBS domain protein; str 98.0 7.2E-06 2.5E-10 79.5 6.4 59 699-757 42-103 (172)
103 1yav_A Hypothetical protein BS 98.0 5.4E-06 1.8E-10 79.0 5.1 59 699-757 14-74 (159)
104 1pvm_A Conserved hypothetical 98.0 1.8E-05 6E-10 77.6 8.9 58 699-756 9-66 (184)
105 3i8n_A Uncharacterized protein 97.9 5.2E-06 1.8E-10 76.4 4.5 59 700-758 7-68 (130)
106 1y5h_A Hypothetical protein RV 97.9 5.3E-06 1.8E-10 76.3 4.5 55 699-753 8-62 (133)
107 3oi8_A Uncharacterized protein 97.9 9.8E-06 3.4E-10 77.2 6.5 59 699-757 38-99 (156)
108 2nyc_A Nuclear protein SNF4; b 97.9 1.6E-05 5.4E-10 74.0 7.8 54 704-757 16-69 (144)
109 3hf7_A Uncharacterized CBS-dom 97.9 6.2E-06 2.1E-10 76.0 4.9 58 701-758 4-64 (130)
110 2pfi_A Chloride channel protei 97.9 8.1E-06 2.8E-10 77.9 5.9 59 699-757 13-73 (164)
111 3k6e_A CBS domain protein; str 97.9 8.6E-06 2.9E-10 77.8 5.6 56 701-756 17-74 (156)
112 3fhm_A Uncharacterized protein 97.9 8E-06 2.7E-10 78.5 4.8 58 699-756 24-84 (165)
113 3sl7_A CBS domain-containing p 97.9 8.3E-06 2.8E-10 79.1 4.6 55 700-754 5-61 (180)
114 2j9l_A Chloride channel protei 97.8 1.2E-05 4.2E-10 78.4 5.5 59 698-756 10-76 (185)
115 1o50_A CBS domain-containing p 97.8 1.6E-05 5.3E-10 75.7 5.9 56 699-755 16-72 (157)
116 2rc3_A CBS domain; in SITU pro 97.8 2.4E-05 8.2E-10 72.1 7.0 55 700-755 7-64 (135)
117 2uv4_A 5'-AMP-activated protei 97.8 3.1E-05 1.1E-09 73.2 6.9 56 700-757 24-79 (152)
118 3ocm_A Putative membrane prote 97.8 2.7E-05 9.3E-10 75.7 6.6 58 699-756 36-96 (173)
119 3pc3_A CG1753, isoform A; CBS, 97.7 3.3E-05 1.1E-09 88.7 6.5 58 699-756 384-443 (527)
120 3kxr_A Magnesium transporter, 97.7 5.8E-05 2E-09 75.5 7.4 61 583-648 115-175 (205)
121 3oco_A Hemolysin-like protein 97.6 8.2E-05 2.8E-09 70.3 7.5 60 583-648 85-144 (153)
122 4fry_A Putative signal-transdu 97.6 0.0001 3.4E-09 69.8 7.1 61 583-649 77-137 (157)
123 3usb_A Inosine-5'-monophosphat 97.2 0.00097 3.3E-08 75.9 11.1 60 583-647 174-234 (511)
124 2yvy_A MGTE, Mg2+ transporter 97.2 0.00026 8.9E-09 74.2 5.8 60 583-647 198-257 (278)
125 2oux_A Magnesium transporter; 97.2 0.00033 1.1E-08 73.8 6.5 61 583-648 200-260 (286)
126 2zy9_A Mg2+ transporter MGTE; 97.1 0.00058 2E-08 77.1 6.7 60 583-647 218-277 (473)
127 4fxs_A Inosine-5'-monophosphat 97.0 0.00068 2.3E-08 76.9 6.5 53 701-753 91-143 (496)
128 1me8_A Inosine-5'-monophosphat 96.9 0.00028 9.5E-09 80.4 2.3 60 583-646 160-220 (503)
129 1vrd_A Inosine-5'-monophosphat 96.7 0.0003 1E-08 80.0 0.2 55 699-753 95-149 (494)
130 1zfj_A Inosine monophosphate d 96.5 0.0032 1.1E-07 71.5 7.0 55 700-754 91-147 (491)
131 4af0_A Inosine-5'-monophosphat 96.2 0.00085 2.9E-08 74.9 0.0 57 583-644 199-255 (556)
132 1jcn_A Inosine monophosphate d 96.1 0.0011 3.7E-08 75.8 0.7 55 700-754 109-166 (514)
133 2cu0_A Inosine-5'-monophosphat 96.1 0.0019 6.6E-08 73.2 2.7 58 583-645 149-206 (486)
134 4avf_A Inosine-5'-monophosphat 96.0 0.001 3.5E-08 75.3 -0.1 53 700-753 89-141 (490)
135 2pq4_B Periplasmic nitrate red 28.3 31 0.001 23.5 2.0 25 228-252 4-28 (35)
136 1tif_A IF3-N, translation init 25.5 87 0.003 25.5 4.6 27 730-756 13-39 (78)
137 2ww9_B Protein transport prote 23.6 2.6E+02 0.0087 22.8 7.0 43 54-96 26-71 (80)
138 1rh5_B Preprotein translocase 20.6 2.8E+02 0.0094 22.2 6.6 31 70-100 31-62 (74)
No 1
>3org_A CMCLC; transporter, transport protein; 3.50A {Cyanidioschyzon merolae}
Probab=100.00 E-value=3.1e-87 Score=788.28 Aligned_cols=605 Identities=24% Similarity=0.404 Sum_probs=449.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhhhccccccCCCCH
Q 003889 71 SVVVKWFFALLIGIGTGLAAVFINISVENFAGWKFSLTFSIIQKSYFAGFLVYILINLILVFSSVYIITKFAPAAAGSGI 150 (788)
Q Consensus 71 ~~~~~w~~~~liGv~~Gl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~a~GsGi 150 (788)
|..+.+++++++|+++|+++++++..++++++++.... +...+ ...|+.|+.+++++++++++++++++|.++||||
T Consensus 6 ~~~r~~~~~~lvGi~~gl~~~~~~~~i~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~p~a~GsGI 82 (632)
T 3org_A 6 YLLRLVCFLTLLGVTAALFIFAVDLAVHGLEELRMKIS-RLAGR--FAGYILYVVSGVALCLLSTFWCAVLSTEAEGSGL 82 (632)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHSCH--HHHHHHHHHHHHHHHHHHHHHHHHSCGGGCBCSH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhh--hHHHHHHHHHHHHHHHHHHHHHHhcCCccCCCCH
Confidence 43433447899999999999999999999998764332 22222 4456777778888899999999999999999999
Q ss_pred HHHHHHHcCcc--cccchhhHHHHHHHHHHHHHhccCCcccccchHHHHHHHHHHHhhccCcccccccccccc-ccCChh
Q 003889 151 PEIKGYLNGVD--IHGILLFRTLIGKIFGSIGSVGGGLALGKEGPLVHTGACIASLLGQGGSTKYHLRYRWLQ-VFRSDR 227 (788)
Q Consensus 151 pev~~~l~g~~--~~~~l~~~~l~~K~~~~~lsv~sG~svG~EGP~vhiGa~igs~l~~~~~~~~~l~~~~~~-~f~~~~ 227 (788)
||||++++|.. .++.+++|++++|++++++++++|+|+|||||++|+||++|+.+++. ++++ .+++++
T Consensus 83 p~v~~~l~g~~~~~~~~~~~~~~~~K~~~~~l~igsG~s~GrEGP~vqiGa~ig~~~~~~---------~~f~~~~~~~~ 153 (632)
T 3org_A 83 PQMKSILSGFYDKMRSALELRVLFAKALGLICAIGGGLPVGWEGPNVHIACIIAHQFYRL---------GVFKELCTDRA 153 (632)
T ss_dssp HHHHHHTTTTHHHHGGGGSHHHHHHHHHHHHHHHHTTCSCBSHHHHHHHHHHHHHHHTTS---------HHHHHHHHSHH
T ss_pred HHHHHHHhCccccccccccHHHHHHHHHHHHHHHhcCCCccccchHHHHHHHHHHHHhhh---------hhhccccCCHH
Confidence 99999999976 67889999999999999999999999999999999999999988751 0222 223788
Q ss_pred hhhhHHHHhhhhhhhhhhcCCccchhhhhhhhchhhhhhhHHHHHHHHHHHHHHHHHhhhhccCCCccccCCCceEEeec
Q 003889 228 DRRDLVTCGCAAGVAAAFRAPVGGVLFALEEVTSWWRSQLMWRVFFTSAIVAVVVRSAMGWCKSGKCGHFGSGGFIIWDI 307 (788)
Q Consensus 228 ~~r~li~~GaaAGvaaaF~APigGvlFalE~~~~~~~~~~~~~~~~~~~va~~v~~~~~~~~~~~~~~~f~~~~~~~f~~ 307 (788)
+||++++||+|||+||+|||||||++|++||+.++|+.+.+|+++++|++++++.+.+... ...+.+|+. .|+.
T Consensus 154 ~~r~ll~aGaaAG~aaaF~aPlaGvlFalE~~~~~~~~~~~~~~~~as~~a~~v~~~~~~~--~~~~~~~~~----~~~~ 227 (632)
T 3org_A 154 LRLQTLAAACAVGLASSFGAPLGGVLYSIETIASFYLVQAFWKGVLSALSGAIVYELLYTT--PLVEAFEGT----NFDA 227 (632)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHTCSEEETTHHHHHHHHHHHHHHHTTC-----------------------
T ss_pred HHHHHHHHHHHHHHHHHhCCccHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhccC--ccccccccc----cccc
Confidence 9999999999999999999999999999999999999999999999999999887643210 000011211 1221
Q ss_pred cCCCCCCchhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhcccCCcceeeehhHHHHHHHHHHhcccccccCCCCC
Q 003889 308 SDGQEDYSFEELLPMAVIGVIGGLLGALFNQLTLYMTSWRRNYLHKKGNRVKIIEACVISVITSVISFGLPLLRKCSPCP 387 (788)
Q Consensus 308 ~~~~~~~~~~~l~~~i~lGv~~Gllg~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~c~~~~ 387 (788)
..++++.++ +++++|++||++|++|++++ .++.+++.++..+.+|++++++++++++++. +|..
T Consensus 228 ---~~~~~~~~l-~~~~lGi~~Gl~g~~f~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~p~~------- 291 (632)
T 3org_A 228 ---SDVSRTQTL-LYAILGALMGVLGALFIRCV---RSIYELRMRHYPGTNRYFLVGVVALFASALQ--YPFR------- 291 (632)
T ss_dssp ----CCCCSCTH-HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHSSTTCCTHHHHHHHHHHHHHHT--TTC--------
T ss_pred ---cCCCcHHHH-HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHhhcchhHHHHHHHHHHHHHHHH--HHHH-------
Confidence 235778889 99999999999999999444 4443322222223456777777777766432 2221
Q ss_pred CCCCCCCCCCCCCCCCCCccccccccCCCccchhhhhhccCcHHHHHHHhcccCC---CchhHHHHHHHHHHHHHHHHHH
Q 003889 388 ESDLDSGIECPRPPGMYGNYVNFYCSKDKEYNDLATIFFNTQDDAIRNLFSAKTI---HEYSAQSLLTFLVMFYTLAVVT 464 (788)
Q Consensus 388 ~~~~~~~~~~p~~~g~~g~~~~~~c~~g~~y~~la~l~~~~~~~~i~~l~~~~~~---~~~~~~~l~~~~~~k~~~t~~t 464 (788)
.| . + +.++.++.+|++.+. +.+.+..++++++.|+++|++|
T Consensus 292 -------------~g-------------~-~---------~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~k~~~t~~s 335 (632)
T 3org_A 292 -------------LF-------------A-L---------DPRATINDLFKAVPLYQTDHFGWTELILMPIIKFILVALS 335 (632)
T ss_dssp -----------------------------------------CHHHHHHHHSCC----------CCSSHHHHHHHHHHHHH
T ss_pred -------------hc-------------C-C---------cHHHHHHHHHcCCccccccchhHHHHHHHHHHHHHHHHHH
Confidence 11 1 0 112445566654221 1233446778889999999999
Q ss_pred hcCCcCcccchhHHHHHHHHHHHHHHHHHHhhhcCCCchHHHHHHhhhhhhhhhcchhHHHHHHHHHHhCCCchHHHHHH
Q 003889 465 FGIAVPAGQFVPGIMIGSTYGRLVGMFVVNFYKKLNIEEGTYALLGAASFLGGSMRMTVSLCVIMVEITNNLKFLPLIML 544 (788)
Q Consensus 465 ~g~g~~gG~f~P~l~iGa~~G~l~g~~~~~~~~~~~~~~~~~aliGaaa~l~g~~r~pis~~vi~~E~Tg~~~~l~pi~~ 544 (788)
+|+|+|||+|+|++++||++|+++|.+++.++|. .++|+.||++||||+++|++|+|+++ ||++|+||++++++|+|+
T Consensus 336 ~g~g~pGGif~P~l~iGA~~G~~~g~~~~~~~p~-~~~p~~~a~vGmaa~~~~v~~ap~t~-vi~~E~tg~~~~~lpl~i 413 (632)
T 3org_A 336 IGLPLPAGVFVPSFLIGAGFGRLYGELMRVVFGN-AIVPGSYAVVGAAAFTAGVTRALSCA-VIIFEVTGQIRHLVPVLI 413 (632)
T ss_dssp TTSSSBCBCHHHHHHHHHHHHHHHHHHHHHHHCT-TSCHHHHHHHHHHHHHHHHSCCTTHH-HHHHHHTCCCSCSHHHHH
T ss_pred HhCCCcchhhHHHHHHHHHHHHHHHHHHHHhCCc-ccchHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhCChhHHHHHHH
Confidence 9999999999999999999999999999887653 37899999999999999999988876 589999999999999999
Q ss_pred HHHHHHHHHhhhCccHHHHHHHHcCCCCCCCCchhhhcccchhhhcc--CCceEEecCcccHHHHHHHHh-hCCCCeeEE
Q 003889 545 VLLISKAVGDAFSEGLYEEQAHLRGVPLLESRPKYKMRQMTAKEACG--AQKVVSLPRIIKVADVVSILR-TNKHNGFPV 621 (788)
Q Consensus 545 ~~~~a~~v~~~~~~~iy~~~l~~kg~p~l~~~~~~~l~~l~v~diM~--~~~vv~l~~~~tv~~a~~~L~-~~~~~~fPV 621 (788)
++++|+++++.+++++||.+++.|++|++++..++..++++|+|+|+ ++ +++++++++++|+.+.|+ +++++++||
T Consensus 414 a~~~a~~v~~~~~~~iY~~~~~~k~lp~l~~~~~~~~~~~~V~diM~p~~~-v~~v~~~~t~~e~~~~~~~~~~~~~~PV 492 (632)
T 3org_A 414 SVLLAVIVGNAFNRSLYETLVLMKHLPYMPILRRDRSPEMTAREIMHPIEG-EPHLFPDSEPQHIKGILEKFPNRLVFPV 492 (632)
T ss_dssp HHHHHHHHHHHHCCCHHHHHHHHTTCCEEEEECTTCCTTSBHHHHCBCTTT-SCCBCSSSCHHHHHHHHHHSTTCCEECB
T ss_pred HHHHHHHHHHHhCCCHHHHHHHhcCCCccccccccccccCcHHHHhhcCCC-ceEecCCCcHHHHHHHHHhcCCcceEEE
Confidence 99999999999988999999999999998766555668899999999 77 999999999999999999 899999999
Q ss_pred eeCCCCCCcEEEEEEeHHHHHHHHhcccccCCCCCCCCCCCCCCccccccc--cccccCCCCCCCcc-ccccCccc----
Q 003889 622 IDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCDTRGGSKPISHSFS--EFVKPASSKGLSID-DIHLSSDD---- 694 (788)
Q Consensus 622 Vd~~~~~~~~lvGiI~r~dL~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~-di~~~~~~---- 694 (788)
||+ +++++|+|+++|+.+.+.++....+++ .+.+ +....+. .+.+.......... .......+
T Consensus 493 vd~----~~~lvGiVt~~DL~~~l~~~~~~~~~~--~~~~----~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~e~~~~ 562 (632)
T 3org_A 493 IDA----NGYLLGAISRKEIVDRLQHVLEDVPEP--IAGH----RTLVLLDAADLSENIEGLVDETPSGEHSSKGKRTAT 562 (632)
T ss_dssp BCT----TCBBCCEESHHHHTTTTTTC-----------------------------------------------------
T ss_pred Eec----CCeEEEEEEHHHHHHHHHHHhhhcccc--cccc----cceeccCHHHHHhhcccCCCCCcccchhhhcccceE
Confidence 998 789999999999987655432000100 0000 0000000 00000000000000 00000000
Q ss_pred -cccccCcccccCCCCceecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHhhhhhhhcCCC
Q 003889 695 -MEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIEDGEDS 759 (788)
Q Consensus 695 -~~~~idl~~~m~~~p~tV~~~~sl~~a~~lf~~~glr~lpVVd~~g~lvGIITr~DLl~~~~~~~ 759 (788)
.+..-+++++|+++|.+|++|+++.++.++|++++.+++||+ ++|+++||||++|+++++.++.
T Consensus 563 ~~~~~~~v~~iMt~~pitV~~~~~l~ea~~~M~~~~i~~lpVv-e~G~lvGIVT~~Dll~~~~~~~ 627 (632)
T 3org_A 563 VLEPTSSLVVPCDVSPIVVTSYSLVRQLHFLFVMLMPSMIYVT-ERGKLVGIVEREDVAYGYSNSL 627 (632)
T ss_dssp --------CCSCCCCCCEEETTCBHHHHHHHHHHTCCSEEEEE-ETTEEEEEEEGGGTEECCCC--
T ss_pred eeccccccchhhcCCCceecCCCcHHHHHHHHHhcCCCEEEEE-ECCEEEEEEehhhHHHHHhhhH
Confidence 011113788999999999999999999999999999999999 5699999999999999877654
No 2
>3nd0_A SLL0855 protein; CLC family CL-/H+ antiporter, CLC_EC1 homolog, transport protein; 3.20A {Synechocystis} PDB: 3q17_A
Probab=100.00 E-value=2.8e-68 Score=601.04 Aligned_cols=439 Identities=21% Similarity=0.357 Sum_probs=342.5
Q ss_pred CcccccccchHHHHHHHhcCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHH
Q 003889 45 SLDYEVIENYAYREEQAQRGKLYVGYSVVVKWFFALLIGIGTGLAAVFINISVENFAGWKFSLTFSIIQKSYFAGFLVYI 124 (788)
Q Consensus 45 sldy~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~liGv~~Gl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (788)
..|||++++ .+.++.+++.+.+..+..++.+++++++|+++|+++.+|+..+++++++++..... .....+..|+.++
T Consensus 2 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~l~~~liGi~~Gl~~~~f~~~l~~~~~~~~~~~~~-~~~~~~~~~~l~~ 79 (466)
T 3nd0_A 2 AADFETSNR-RWLDKLPRNLTDSARSLHPRTLVAAIVVGLITGVLGAGFKSAVNNMLQWRSQLAQI-LAPIPPLAWLVTA 79 (466)
T ss_dssp -------------------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-STTSCTHHHHHHH
T ss_pred CccHHHHHH-HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cccccHHHHHHHH
Confidence 369999944 44433333222222222344456899999999999999999999999998876432 1222333355555
Q ss_pred HHHHHHHHHHHHhhhccccccCCCCHHHHHHHHcCcccccchhhHHHHHHHHHHHHHhccCCcccccchHHHHHHHHHHH
Q 003889 125 LINLILVFSSVYIITKFAPAAAGSGIPEIKGYLNGVDIHGILLFRTLIGKIFGSIGSVGGGLALGKEGPLVHTGACIASL 204 (788)
Q Consensus 125 ~~~~~~~~~~~~l~~~~~p~a~GsGipev~~~l~g~~~~~~l~~~~l~~K~~~~~lsv~sG~svG~EGP~vhiGa~igs~ 204 (788)
.++.++++++++++++++|.++||||||++++++|.+ +..++|+++.|++++++++++|+|+|||||++|+||++|++
T Consensus 80 ~~~~~~~~l~~~l~~~~~p~a~GsGIp~v~~~l~g~~--~~~~~~~~~~k~~~~~ltig~G~S~GrEGP~vqiGa~ig~~ 157 (466)
T 3nd0_A 80 LISGGMVALSFWLMKRFAPDTSGSGIPQIEGHLEGKL--PLVWQRVLPIKLVGGFLSLGAGMLAGFEGPTIQMGGSIGQM 157 (466)
T ss_dssp HHHHHHHHHHHHHHTTTCGGGSBCSHHHHHHHTTSSS--CCCHHHHHHHHHHHHHHHHHTTCSCCTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCcCCCCHHHHHHHHcCCC--CCchHHHHHHHHHHHHHHHhcCCCCCCcchHHHHHHHHHHH
Confidence 5666677778889999999999999999999999854 44568999999999999999999999999999999999999
Q ss_pred hhccCccccccccccccccCChhhhhhHHHHhhhhhhhhhhcCCccchhhhhhhhchhhh--hhhHHHHHHHHHHHHHHH
Q 003889 205 LGQGGSTKYHLRYRWLQVFRSDRDRRDLVTCGCAAGVAAAFRAPVGGVLFALEEVTSWWR--SQLMWRVFFTSAIVAVVV 282 (788)
Q Consensus 205 l~~~~~~~~~l~~~~~~~f~~~~~~r~li~~GaaAGvaaaF~APigGvlFalE~~~~~~~--~~~~~~~~~~~~va~~v~ 282 (788)
++| +++. +++|||++++||+|||+||+||||++|++|++|++.++|+ ...++++++++++|+++.
T Consensus 158 l~~-----------~~~~--~~~~~r~ll~aGaAAGlaAaF~APlaGvlFalE~l~~~~~~~~~~~~~~~~as~~a~~v~ 224 (466)
T 3nd0_A 158 TGG-----------WFKA--TQENQRILIAVGAGAGLATAFNAPLAGVALIGEEMHPRFRSQTLAYHSLLFGCVMATIIL 224 (466)
T ss_dssp HHH-----------HTTC--CHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHSSSCCCCSSCCTTHHHHHHHHHHHHHHH
T ss_pred HHH-----------HcCC--ChhHHHHHHHHHHHHHHHHHhCCchHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHHHH
Confidence 997 3333 6789999999999999999999999999999999988884 455779999999999888
Q ss_pred HHhhhhccCCCccccCCCceEEeeccCCCCCCchhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhcccCCcceeee
Q 003889 283 RSAMGWCKSGKCGHFGSGGFIIWDISDGQEDYSFEELLPMAVIGVIGGLLGALFNQLTLYMTSWRRNYLHKKGNRVKIIE 362 (788)
Q Consensus 283 ~~~~~~~~~~~~~~f~~~~~~~f~~~~~~~~~~~~~l~~~i~lGv~~Gllg~~f~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (788)
+.+. ++.+ .|+++. ...++..++++++++|+++|++|.+|+ +.+.+..+++.+.+ +..++++
T Consensus 225 ~~~~-----------g~~~--~f~~~~-~~~~~~~~l~~~illGi~~Gl~g~lf~---~~~~~~~~~~~~~~-~~~~~~~ 286 (466)
T 3nd0_A 225 RMIR-----------GQSA--IISLTE-FKRVPLDSLWMFIILGILFGVMGYTFN---RGLFKVLDWFDRLP-PLATKWK 286 (466)
T ss_dssp HHHT-----------CSSC--SSCCTT-CCCCCGGGHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHTCC-HHHHHHH
T ss_pred HHHc-----------CCCC--ceecCC-CCCCCHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHcc-cccHHHH
Confidence 7642 3333 344442 345678999999999999999999999 55555555442211 1225667
Q ss_pred hhHHHHHHHHHHhcccccccCCCCCCCCCCCCCCCCCCCCCCCccccccccCCCccchhhhhhccCcHHHHHHHhcccCC
Q 003889 363 ACVISVITSVISFGLPLLRKCSPCPESDLDSGIECPRPPGMYGNYVNFYCSKDKEYNDLATIFFNTQDDAIRNLFSAKTI 442 (788)
Q Consensus 363 ~~~~~~~~~~~~~~~p~~~~c~~~~~~~~~~~~~~p~~~g~~g~~~~~~c~~g~~y~~la~l~~~~~~~~i~~l~~~~~~ 442 (788)
+.+++++++++.++.|.. .| .| | +.++.++++
T Consensus 287 ~~l~g~~~g~l~~~~p~~--------------------~G-----------~G--~------------~~i~~~~~~--- 318 (466)
T 3nd0_A 287 GFLLGSIIGILSLFPLPL--------------------TD-----------GG--D------------NAVLWAFNS--- 318 (466)
T ss_dssp HHHHHHHHHHHTTSSSSC--------------------SS-----------SS--H------------HHHHHHTTS---
T ss_pred HHHHHHHHHHHHHHHHHH--------------------cC-----------Cc--H------------HHHHHHHcC---
Confidence 778888888888877654 12 12 3 446666653
Q ss_pred CchhHHHHHHHHHHHHHHHHHHhcCCcCcccchhHHHHHHHHHHHHHHHHHHhhhcCCCchHHHHHHhhhhhhhhhcchh
Q 003889 443 HEYSAQSLLTFLVMFYTLAVVTFGIAVPAGQFVPGIMIGSTYGRLVGMFVVNFYKKLNIEEGTYALLGAASFLGGSMRMT 522 (788)
Q Consensus 443 ~~~~~~~l~~~~~~k~~~t~~t~g~g~~gG~f~P~l~iGa~~G~l~g~~~~~~~~~~~~~~~~~aliGaaa~l~g~~r~p 522 (788)
++++..++++++.|+++|++|+|+|+|||+|+|++++||++|+++|.+++.++|....+|+.||++||||+++|++|+|
T Consensus 319 -~~~~~~L~~~~~~K~~~t~lt~gsG~~GGif~Psl~iGA~~G~~~g~~~~~~~p~~~~~~~~~a~vGmaa~~a~v~~aP 397 (466)
T 3nd0_A 319 -QSHFSTLILVFCGRFLLTLICYGSGAIGGIFAPMLGIASIVSVAMARHFHLLFPSQIPEPAVMAIAGMGALVAATVRAP 397 (466)
T ss_dssp -CCCHHHHHHHHHHHHHHHHHHHHTTCBCCSHHHHHHHHHHHHHHHHHHHHHHCTTTCSSTHHHHHHTTSHHHHHHHSCH
T ss_pred -CccHHHHHHHHHHHHHHHHHHHhCCCCCceehHHHHHHHHHHHHHHHHHHHhCCccccCHHHHHHHHHHHHHHHHHhhH
Confidence 3567788889999999999999999999999999999999999999999988877789999999999999999999999
Q ss_pred HHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhhh-CccHHHHHHHH
Q 003889 523 VSLCVIMVEITNNLKFLPLIMLVLLISKAVGDAF-SEGLYEEQAHL 567 (788)
Q Consensus 523 is~~vi~~E~Tg~~~~l~pi~~~~~~a~~v~~~~-~~~iy~~~l~~ 567 (788)
+|+++|++|+||++++++|+|+++++|+++++.+ ++++||.++++
T Consensus 398 lt~ivlv~Eltg~~~~~lpl~ia~~iA~~v~~~~~~~~iY~~~l~r 443 (466)
T 3nd0_A 398 LTAILLTIEMTDNYFVILPLLVTCLVASVVAEALGGKPIYTVLLER 443 (466)
T ss_dssp HHHHHHHHHTTCCCTTHHHHHHHHHHHHHHHTTSCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHCChHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHH
Confidence 9999999999999999999999999999999999 79999999875
No 3
>1ots_A Voltage-gated CLC-type chloride channel ERIC; CLC chloride channel, FAB complex, membrane protein; 2.51A {Escherichia coli} SCOP: f.20.1.1 PDB: 2fee_A 2h2p_A 2exw_A 1kpk_A 2exy_A 2htl_A 3ejy_A 2ht2_A 2fed_A 2fec_A 1otu_A 3ejz_A 2ht4_A 2htk_A 2ht3_A 1ott_A 2h2s_A 3det_A 2ez0_A 3nmo_A ...
Probab=100.00 E-value=4.3e-66 Score=585.47 Aligned_cols=415 Identities=26% Similarity=0.473 Sum_probs=344.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhhhccccccCCCCHHH
Q 003889 73 VVKWFFALLIGIGTGLAAVFINISVENFAGWKFSLTFSIIQKSYFAGFLVYILINLILVFSSVYIITKFAPAAAGSGIPE 152 (788)
Q Consensus 73 ~~~w~~~~liGv~~Gl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~a~GsGipe 152 (788)
++.|++++++|+++|+++.+|+..+++++++++......... ....|+.|+.++++++++++++++++.|.++||||||
T Consensus 33 ~~~~~~~~liGv~~Gl~~~~f~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ll~~~l~~~~~p~a~GsGip~ 111 (465)
T 1ots_A 33 LAILFMAAVVGTLVGLAAVAFDKGVAWLQNQRMGALVHTADN-YPLLLTVAFLCSAVLAMFGYFLVRKYAPEAGGSGIPE 111 (465)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSS-HHHHHHHHHHHHHHHHHHHHHHHHHHCGGGSSCSHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc-cccHHHHHHHHHHHHHHHHHHHHHHhCccccCCChHH
Confidence 456779999999999999999999999999988764322111 1122445567787888899999999999999999999
Q ss_pred HHHHHcCcccccchhhHHHHHHHHHHHHHhccCCcccccchHHHHHHHHHHHhhccCccccccccccccccCChhhhhhH
Q 003889 153 IKGYLNGVDIHGILLFRTLIGKIFGSIGSVGGGLALGKEGPLVHTGACIASLLGQGGSTKYHLRYRWLQVFRSDRDRRDL 232 (788)
Q Consensus 153 v~~~l~g~~~~~~l~~~~l~~K~~~~~lsv~sG~svG~EGP~vhiGa~igs~l~~~~~~~~~l~~~~~~~f~~~~~~r~l 232 (788)
++++++|.+ +..++|+++.|++++++++++|+|+|||||++|+||++|+.++| +++. ++++|||++
T Consensus 112 v~~~l~~~~--~~~~~r~~~~k~~~~~lti~sG~s~GrEGP~vqiGa~ig~~l~~-----------~~~l-~~~~~~r~l 177 (465)
T 1ots_A 112 IEGALEDQR--PVRWWRVLPVKFFGGLGTLGGGMVLGREGPTVQIGGNIGRMVLD-----------IFRL-KGDEARHTL 177 (465)
T ss_dssp HHHHHTTCS--CCCHHHHHHHHHHHHHHHHHTTCSCBSHHHHHHHHHHHHHHHHH-----------HTTC-CSHHHHHHH
T ss_pred HHHHHhCCC--CCCcHHHHHHHHHHHHHHHhcCCCcCCcchHHHHHHHHHHHHHH-----------Hhcc-CCHHHHHHH
Confidence 999999853 45568999999999999999999999999999999999999997 3332 378899999
Q ss_pred HHHhhhhhhhhhhcCCccchhhhhhhhchhhhhhh--HHHHHHHHHHHHHHHHHhhhhccCCCccccCCCceEEeeccCC
Q 003889 233 VTCGCAAGVAAAFRAPVGGVLFALEEVTSWWRSQL--MWRVFFTSAIVAVVVRSAMGWCKSGKCGHFGSGGFIIWDISDG 310 (788)
Q Consensus 233 i~~GaaAGvaaaF~APigGvlFalE~~~~~~~~~~--~~~~~~~~~va~~v~~~~~~~~~~~~~~~f~~~~~~~f~~~~~ 310 (788)
++||+|||+||+|||||+|++|++||+.++|+.+. ++++++++++++++.+.+. |..+ .|+++ .
T Consensus 178 i~~GaaAGlaAaF~APlaGvlFalE~l~~~~~~~~~~~~~~~~as~~a~~v~~~~~-----------G~~~--~f~~~-~ 243 (465)
T 1ots_A 178 LATGAAAGLAAAFNAPLAGILFIIEEMRPQFRYTLISIKAVFIGVIMSTIMYRIFN-----------HEVA--LIDVG-K 243 (465)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTTSCSSSCCCCCHHHHHHHHHHHHHHHHHHS-----------CSCC--SSCCC-C
T ss_pred HHHHHHHHHHHHHCCchHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHc-----------CCCc--eeecC-C
Confidence 99999999999999999999999999999998766 8999999999988887542 3333 23443 2
Q ss_pred CCCCchhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhcc-cCC-cceeeehhHHHHHHHHHHhcccccccCCCCCC
Q 003889 311 QEDYSFEELLPMAVIGVIGGLLGALFNQLTLYMTSWRRNYLHK-KGN-RVKIIEACVISVITSVISFGLPLLRKCSPCPE 388 (788)
Q Consensus 311 ~~~~~~~~l~~~i~lGv~~Gllg~~f~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~p~~~~c~~~~~ 388 (788)
....++.++++++++|+++|++|.+|++++ .+..+++.+. +.+ +++++++.+.+++++++.++.|..
T Consensus 244 ~~~~~~~~l~~~illGi~~Gl~g~~f~~~~---~~~~~~~~~~~~~~~~~~~~~~~i~gl~~g~l~~~~P~~-------- 312 (465)
T 1ots_A 244 LSDAPLNTLWLYLILGIIFGIFGPIFNKWV---LGMQDLLHRVHGGNITKWVLMGGAIGGLCGLLGFVAPAT-------- 312 (465)
T ss_dssp CCCCCGGGHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHCGGG--------
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhcccCCchhHHHHHHHHHHHHHHHHHHhHhh--------
Confidence 234567899999999999999999999544 4444443211 122 334577888899999999888876
Q ss_pred CCCCCCCCCCCCCCCCCccccccccCCCccchhhhhhccCcHHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHHhcCC
Q 003889 389 SDLDSGIECPRPPGMYGNYVNFYCSKDKEYNDLATIFFNTQDDAIRNLFSAKTIHEYSAQSLLTFLVMFYTLAVVTFGIA 468 (788)
Q Consensus 389 ~~~~~~~~~p~~~g~~g~~~~~~c~~g~~y~~la~l~~~~~~~~i~~l~~~~~~~~~~~~~l~~~~~~k~~~t~~t~g~g 468 (788)
.| .| | +.++.++++ ++++..++++++.|+++|++|+|+|
T Consensus 313 ------------lG-----------~G--~------------~~i~~~~~~----~~~~~~l~~~~~~K~~~t~lt~gsG 351 (465)
T 1ots_A 313 ------------SG-----------GG--F------------NLIPIATAG----NFSMGMLVFIFVARVITTLLCFSSG 351 (465)
T ss_dssp ------------SS-----------CS--T------------THHHHHHHT----CSCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred ------------cC-----------Ch--H------------HHHHHHHcC----CchHHHHHHHHHHHHHHHHHHHcCC
Confidence 22 23 3 335666653 3566778889999999999999999
Q ss_pred cCcccchhHHHHHHHHHHHHHHHHHHhhhcCCCchHHHHHHhhhhhhhhhcchhHHHHHHHHHHhCCCchHHHHHHHHHH
Q 003889 469 VPAGQFVPGIMIGSTYGRLVGMFVVNFYKKLNIEEGTYALLGAASFLGGSMRMTVSLCVIMVEITNNLKFLPLIMLVLLI 548 (788)
Q Consensus 469 ~~gG~f~P~l~iGa~~G~l~g~~~~~~~~~~~~~~~~~aliGaaa~l~g~~r~pis~~vi~~E~Tg~~~~l~pi~~~~~~ 548 (788)
+|||+|+|++++||++|+++|.+++.++|....+|+.||++||||+++|++|+|+|+++|++|+||++++++|+|+++++
T Consensus 352 ~~GGif~Psl~iGA~~G~~~g~~~~~~~p~~~~~~~~~alvGmaa~~a~v~raPlt~ivlv~Eltg~~~~llpl~ia~~i 431 (465)
T 1ots_A 352 APGGIFAPMLALGTVLGTAFGMVAVELFPQYHLEAGTFAIAGMGALLAASIRAPLTGIILVLEMTDNYQLILPMIITGLG 431 (465)
T ss_dssp CSSBSHHHHHHHHHHHHHHHHHHHHHHCGGGTCCHHHHHHHHHTHHHHHTSCCHHHHHHHHHHHHCCGGGHHHHHHHHHH
T ss_pred CChhhhHHHHHHHHHHHHHHHHHHHHHCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 99999999999999999999999998887777899999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhh-CccHHHHHHHHc
Q 003889 549 SKAVGDAF-SEGLYEEQAHLR 568 (788)
Q Consensus 549 a~~v~~~~-~~~iy~~~l~~k 568 (788)
|+++++.+ ++++||.+++++
T Consensus 432 A~~v~~~~~~~~iY~~~l~~~ 452 (465)
T 1ots_A 432 ATLLAQFTGGKPLYSAILART 452 (465)
T ss_dssp HHHHHHTTTCCCHHHHHHHHH
T ss_pred HHHHHHHhCCCChHHHHHHHH
Confidence 99999998 689999999865
No 4
>4ene_A CLC-EC1, H(+)/CL(-) exchange transporter CLCA; membrane protein, coupled ION transporter, cell membrane, TR protein; HET: DMU MAL; 2.40A {Escherichia coli k-12} PDB: 1ots_A 2fee_A 2h2p_A 2exw_A 1kpk_A 2exy_A 2fed_A 2fec_A 1otu_A 2htl_A 2ht2_A 3ejy_A 1ott_A 2h2s_A 4fg6_A 2ht4_A 4ftp_A 3ejz_A 2ht3_A 2htk_A ...
Probab=100.00 E-value=2.2e-65 Score=576.27 Aligned_cols=411 Identities=26% Similarity=0.463 Sum_probs=334.4
Q ss_pred HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhhhccccccCCCCHHHH
Q 003889 75 KWF-FALLIGIGTGLAAVFINISVENFAGWKFSLTFSIIQKSYFAGFLVYILINLILVFSSVYIITKFAPAAAGSGIPEI 153 (788)
Q Consensus 75 ~w~-~~~liGv~~Gl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~a~GsGipev 153 (788)
+|+ +++++|+++|+++.+|+..+++++++++...... ....+..|+.+..++.++++++++++++++|.++||||||+
T Consensus 19 ~~~~~~~liGi~~Gl~~~~f~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~a~GsGip~v 97 (446)
T 4ene_A 19 AILFMAAVVGTLVGLAAVAFDKGVAWLQNQRMGALVHT-ADNYPLLLTVAFLCSAVLAMFGYFLVRKYAPEAGGSGIPEI 97 (446)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-SSSHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGSSCSHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cccchHHHHHHHHHHHHHHHHHHHHHHHhCcccCCCCHHHH
Confidence 444 8899999999999999999999999988764322 11233334445556667788889999999999999999999
Q ss_pred HHHHcCcccccchhhHHHHHHHHHHHHHhccCCcccccchHHHHHHHHHHHhhccCccccccccccccccCChhhhh-hH
Q 003889 154 KGYLNGVDIHGILLFRTLIGKIFGSIGSVGGGLALGKEGPLVHTGACIASLLGQGGSTKYHLRYRWLQVFRSDRDRR-DL 232 (788)
Q Consensus 154 ~~~l~g~~~~~~l~~~~l~~K~~~~~lsv~sG~svG~EGP~vhiGa~igs~l~~~~~~~~~l~~~~~~~f~~~~~~r-~l 232 (788)
+++++|.+ +...+|+++.|++++++++++|+|+|||||++|+||++|++++| ++|. +++|+| ++
T Consensus 98 ~~~l~~~~--~~~~~r~~~~k~~~~~lti~~G~s~GrEGP~vqiGa~ig~~~~~-----------~~~~--~~~~~r~~l 162 (446)
T 4ene_A 98 EGALEDQR--PVRWWRVLPVKFFGGLGTLGGGMVLGREGPTVQIGGNIGRMVLD-----------IFRL--KGDEARHTL 162 (446)
T ss_dssp HHHHHTCS--CCCHHHHHHHHHHHHHHHHHTTCSCBSHHHHHHHHHHHHHHHHH-----------HTTC--CSHHHHHHH
T ss_pred HHHHhCCC--ccchHHHHHHHHHHHHHHHhcCCccCCcchHHHHHHHHHHHHHH-----------HcCC--CHHHHHHHH
Confidence 99999743 34458999999999999999999999999999999999999997 3332 566776 99
Q ss_pred HHHhhhhhhhhhhcCCccchhhhhhhhchhhhh--hhHHHHHHHHHHHHHHHHHhhhhccCCCccccCCCceEEeeccCC
Q 003889 233 VTCGCAAGVAAAFRAPVGGVLFALEEVTSWWRS--QLMWRVFFTSAIVAVVVRSAMGWCKSGKCGHFGSGGFIIWDISDG 310 (788)
Q Consensus 233 i~~GaaAGvaaaF~APigGvlFalE~~~~~~~~--~~~~~~~~~~~va~~v~~~~~~~~~~~~~~~f~~~~~~~f~~~~~ 310 (788)
++||+|||+||+|||||+|++|++|++.++|+. +.++++++++++++++.+.+. ++.+ .|+++.
T Consensus 163 l~aGaaAG~aaaF~aPlaGvlFalE~l~~~~~~~~~~~~~~~~as~~a~~v~~~~~-----------g~~~--~~~~~~- 228 (446)
T 4ene_A 163 LATGAAAGLAAAFNAPLAGILFIIEEMRPQFRYTLISIKAVFIGVIMSTIMYRIFN-----------HEVA--LIDVGK- 228 (446)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTSCSSSCCCCCHHHHHHHHHHHHHHHHHTT-----------TTCC--SCCCCC-
T ss_pred HHHHHHHHHHHHhCCcchHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHc-----------CCCc--eeecCC-
Confidence 999999999999999999999999999888766 568899999999988887642 3332 344432
Q ss_pred CCCCchhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhc-ccCCccee-eehhHHHHHHHHHHhcccccccCCCCCC
Q 003889 311 QEDYSFEELLPMAVIGVIGGLLGALFNQLTLYMTSWRRNYLH-KKGNRVKI-IEACVISVITSVISFGLPLLRKCSPCPE 388 (788)
Q Consensus 311 ~~~~~~~~l~~~i~lGv~~Gllg~~f~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~p~~~~c~~~~~ 388 (788)
...++..++++++++|+++|++|.+|++++ .+..+++.+ ++.++.|. +.+.+++++++++.++.|..
T Consensus 229 ~~~~~~~~l~~~illGi~~Gl~g~~f~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~l~~~~p~~-------- 297 (446)
T 4ene_A 229 LSDAPLNTLWLYLILGIIFGIFGPIFNKWV---LGMQDLLHRVHGGNITKWVLMGGAIGGLCGLLGFVAPAT-------- 297 (446)
T ss_dssp CCCCCGGGHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHCGGG--------
T ss_pred CCccCHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHhHhh--------
Confidence 234567899999999999999999999544 444443321 12233343 33445667778888877765
Q ss_pred CCCCCCCCCCCCCCCCCccccccccCCCccchhhhhhccCcHHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHHhcCC
Q 003889 389 SDLDSGIECPRPPGMYGNYVNFYCSKDKEYNDLATIFFNTQDDAIRNLFSAKTIHEYSAQSLLTFLVMFYTLAVVTFGIA 468 (788)
Q Consensus 389 ~~~~~~~~~p~~~g~~g~~~~~~c~~g~~y~~la~l~~~~~~~~i~~l~~~~~~~~~~~~~l~~~~~~k~~~t~~t~g~g 468 (788)
.| .| |+. ++.+++ +++++..++++++.|+++|++|+|+|
T Consensus 298 ------------~G-----------~G--~~~------------i~~~~~----~~~~~~~L~~~~~~K~~~t~lt~gsG 336 (446)
T 4ene_A 298 ------------SG-----------GG--FNL------------IPIATA----GNFSMGMLVFIFVARVITTLLCFSSG 336 (446)
T ss_dssp ------------SS-----------CC--STH------------HHHHHT----TCSCHHHHHHHHHHHHHHHHHHHTTT
T ss_pred ------------cC-----------Cc--HHH------------HHHHHc----CCchHHHHHHHHHHHHHHHHHHHccC
Confidence 12 23 433 444443 23566788889999999999999999
Q ss_pred cCcccchhHHHHHHHHHHHHHHHHHHhhhcCCCchHHHHHHhhhhhhhhhcchhHHHHHHHHHHhCCCchHHHHHHHHHH
Q 003889 469 VPAGQFVPGIMIGSTYGRLVGMFVVNFYKKLNIEEGTYALLGAASFLGGSMRMTVSLCVIMVEITNNLKFLPLIMLVLLI 548 (788)
Q Consensus 469 ~~gG~f~P~l~iGa~~G~l~g~~~~~~~~~~~~~~~~~aliGaaa~l~g~~r~pis~~vi~~E~Tg~~~~l~pi~~~~~~ 548 (788)
+|||+|+|++++||++|+++|.+++.++|....+|+.||++||||+++|++|+|+|+++|++|+||++++++|+|+++++
T Consensus 337 ~~GGif~Psl~iGA~~G~~~g~~~~~~~p~~~~~~~~~a~vGmaa~~a~~~~aPlt~~vl~~Eltg~~~~~lpl~ia~~i 416 (446)
T 4ene_A 337 APGGIFAPMLALGTVLGTAFGMVAVELFPQYHLEAGTFAIAGMGALLAASIRAPLTGIILVLEMTDNYQLILPMIITGLG 416 (446)
T ss_dssp CSSBSHHHHHHHHHHHHHHHHHHHHHHCGGGTCCHHHHHHHHHTHHHHHHTCCHHHHHHHHHHHHCCGGGHHHHHHHHHH
T ss_pred CCcchhHHHHHHHHHHHHHHHHHHHHhCCccccCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHCChhHHHHHHHHHHH
Confidence 99999999999999999999999999887778999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhh-CccHHHHHHHH
Q 003889 549 SKAVGDAF-SEGLYEEQAHL 567 (788)
Q Consensus 549 a~~v~~~~-~~~iy~~~l~~ 567 (788)
|+++++.+ ++++||.++++
T Consensus 417 a~~v~~~~~~~~iY~~~l~r 436 (446)
T 4ene_A 417 ATLLAQFTGGKPLYSAILAR 436 (446)
T ss_dssp HHHHHHHTTCCCHHHHHHHH
T ss_pred HHHHHHHhCCCChHHHHHHH
Confidence 99999999 78999998864
No 5
>2d4z_A Chloride channel protein; CLC chloride channel cytoplasmic domain, CBS domains, ION CH regulatory subunit, transport protein; 3.10A {Torpedo marmorata} SCOP: d.37.1.1
Probab=99.84 E-value=1.1e-20 Score=196.51 Aligned_cols=180 Identities=19% Similarity=0.316 Sum_probs=123.9
Q ss_pred CCCCCCchhhhcccchhhhccCCceEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCCcEEEEEEeHHHHHHHHhcccc
Q 003889 571 PLLESRPKYKMRQMTAKEACGAQKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVD 650 (788)
Q Consensus 571 p~l~~~~~~~l~~l~v~diM~~~~vv~l~~~~tv~~a~~~L~~~~~~~fPVVd~~~~~~~~lvGiI~r~dL~~lL~~~~~ 650 (788)
|.|.+..+ ...+++|+|+|+++ ++++.+++++.++.++|.++++++|||||+. ++++++|+|+++||++++....
T Consensus 1 P~L~~~~~-~~~~~~v~diMt~~-vvtv~~~~tv~~~~~lm~~~~~~~~PVVd~~--~~~~LvGiIt~~dl~~~l~~~~- 75 (250)
T 2d4z_A 1 PELSWSSA-NKYNIQVGDIMVRD-VTSIASTSTYGDLLHVLRQTKLKFFPFVDTP--DTNTLLGSIDRTEVEGLLQRRI- 75 (250)
T ss_dssp --CCCCCC-CCSSCBTTSSSBSS-CCCEETTCBHHHHHHHHHHCCCSEEEEESCT--TTCBEEEEEEHHHHHHHHHHHH-
T ss_pred CCCCCCCc-ccCCCChHHhcCCC-CeEECCCCCHHHHHHHHHhcCCCEEEEEecC--CCCeEEEEEEHHHHHHHHHHhh-
Confidence 45666555 66789999999999 9999999999999999999999999999972 1478999999999998776431
Q ss_pred cCCCCC-CC----C------CCC-----CCCcccccccc---------------------------------------cc
Q 003889 651 FQHSPL-PC----D------TRG-----GSKPISHSFSE---------------------------------------FV 675 (788)
Q Consensus 651 ~~~~~~-~~----~------~~~-----~~~~~~~~~~~---------------------------------------~~ 675 (788)
....+. +. . .+. +..+.. .+.. +.
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 154 (250)
T 2d4z_A 76 SAYRRQPAAAAEADEEGRNGETGASFTGEAESSF-AYIDQEDAEGQQREGLEAVKVQTEDPRPPSPVPAEEPTQTSGIYQ 154 (250)
T ss_dssp HTTSSSCCCCCCBCCC----------------------------------------------------------------
T ss_pred hhhhhhhhhhhcccccccccccccccccCCccee-eeccccccccccccCccccCCcccCCccccccccccccccccccc
Confidence 100000 00 0 000 000000 0000 00
Q ss_pred c--cCCCCCCCccccccCccc--------cccccCccc-ccCCCCceecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEE
Q 003889 676 K--PASSKGLSIDDIHLSSDD--------MEMYIDLGP-FLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIG 744 (788)
Q Consensus 676 ~--~~~~~~~~i~di~~~~~~--------~~~~idl~~-~m~~~p~tV~~~~sl~~a~~lf~~~glr~lpVVd~~g~lvG 744 (788)
. ....+.....+++++.++ ++..+|+++ +|+++|++|.+++|+.+++++|+++|++|+||+++ |+++|
T Consensus 155 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~Vdl~~~~md~sP~tv~~~tsL~~v~~LF~~lglr~l~V~~~-GrLVG 233 (250)
T 2d4z_A 155 KKQKGTGQVASRFEEMLTLEEIYRWEQREKNVVVNFETCRIDQSPFQLVEGTSLQKTHTLFSLLGLDRAYVTSM-GKLVG 233 (250)
T ss_dssp ------------CCSCCBHHHHHHHHHHHTTCBCCTTSSCEECCSCCBCTTCBHHHHHHHHHHHTCSEEEEEET-TEEEE
T ss_pred cccccccccCcccccccChhhhhhHHHHhcCceeccccccccCCCeEECCCCcHHHHHHHHHHhCCeEEEEEEC-CEEEE
Confidence 0 000001112233333332 567788875 79999999999999999999999999999999986 99999
Q ss_pred EEeHhhhhhhhcC
Q 003889 745 LITRKDLLIEDGE 757 (788)
Q Consensus 745 IITr~DLl~~~~~ 757 (788)
||||+||++++..
T Consensus 234 IVTrkDl~kai~~ 246 (250)
T 2d4z_A 234 VVALAEIQAAIEG 246 (250)
T ss_dssp EEEHHHHHHHHHC
T ss_pred EEEHHHHHHHHHH
Confidence 9999999998764
No 6
>4esy_A CBS domain containing membrane protein; structural genomics, PSI-biology; 2.01A {Sphaerobacter thermophilus}
Probab=99.74 E-value=4.1e-18 Score=166.79 Aligned_cols=150 Identities=16% Similarity=0.227 Sum_probs=112.5
Q ss_pred hhcccchhhhccCCceEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCCcEEEEEEeHHHHHHHHhcccccCCCCCCCC
Q 003889 580 KMRQMTAKEACGAQKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCD 659 (788)
Q Consensus 580 ~l~~l~v~diM~~~~vv~l~~~~tv~~a~~~L~~~~~~~fPVVd~~~~~~~~lvGiI~r~dL~~lL~~~~~~~~~~~~~~ 659 (788)
.+++++|+|+|+++ ++++++++++.++.+.|.+++++++||+|+ +++++|+|+.+|+++.+.... ....
T Consensus 14 ~l~~~~V~diM~~~-v~~v~~~~tl~~a~~~m~~~~~~~~pVvd~----~g~lvGiit~~Dll~~~~~~~-~~~~----- 82 (170)
T 4esy_A 14 AIRQVPIRDILTSP-VVTVREDDTLDAVAKTMLEHQIGCAPVVDQ----NGHLVGIITESDFLRGSIPFW-IYEA----- 82 (170)
T ss_dssp HHHTSBGGGGCCSC-CCCEETTSBHHHHHHHHHHTTCSEEEEECT----TSCEEEEEEGGGGGGGTCCTT-HHHH-----
T ss_pred HHcCCCHHHhcCCC-CcEECCcCcHHHHHHHHHHcCCeEEEEEcC----CccEEEEEEHHHHHHHHhhcc-ccch-----
Confidence 46788999999999 999999999999999999999999999998 799999999999965432211 0000
Q ss_pred CCCCCCccccccccccccCCCCCCCccccccCccccccccCcccccCCCCceecCCCCHHHHHHHHHHcCCCEEEEecCC
Q 003889 660 TRGGSKPISHSFSEFVKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRA 739 (788)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~i~di~~~~~~~~~~idl~~~m~~~p~tV~~~~sl~~a~~lf~~~glr~lpVVd~~ 739 (788)
... .. ......+.. ...+......++++|++++++|++++++.+++++|.+++++++||+|+
T Consensus 83 --------~~~---~~-----~~~~~~~~~-~~~~~~~~~~v~~im~~~~~tv~~~~~l~~a~~~m~~~~~~~lpVvd~- 144 (170)
T 4esy_A 83 --------SEI---LS-----RAIPAPEVE-HLFETGRKLTASAVMTQPVVTAAPEDSVGSIADQMRRHGIHRIPVVQD- 144 (170)
T ss_dssp --------HHH---HT-----TTSCHHHHH-HHHHHHTTCBHHHHCBCCSCCBCTTSBHHHHHHHHHHTTCSEEEEEET-
T ss_pred --------hhh---hh-----hccchhhHH-hhhccccccchhhhcccCcccCCcchhHHHHHHHHHHcCCcEEEEEEC-
Confidence 000 00 000000000 000011234567779999999999999999999999999999999996
Q ss_pred CeEEEEEeHhhhhhhhcCC
Q 003889 740 SRVIGLITRKDLLIEDGED 758 (788)
Q Consensus 740 g~lvGIITr~DLl~~~~~~ 758 (788)
|+++||||++|+++++..+
T Consensus 145 g~lvGivt~~Dil~~l~~~ 163 (170)
T 4esy_A 145 GVPVGIVTRRDLLKLLLLE 163 (170)
T ss_dssp TEEEEEEEHHHHTTTSCCC
T ss_pred CEEEEEEEHHHHHHHHHhc
Confidence 9999999999999987644
No 7
>3lv9_A Putative transporter; CBS domain, PSI, MCSG, structural genomics, protein structur initiative, midwest center for structural genomics; 2.40A {Clostridium difficile 630}
Probab=99.73 E-value=2.2e-17 Score=157.56 Aligned_cols=125 Identities=18% Similarity=0.254 Sum_probs=110.3
Q ss_pred hhcccchhhhccC--CceEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCC-cEEEEEEeHHHHHHHHhcccccCCCCC
Q 003889 580 KMRQMTAKEACGA--QKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGE-RLVIGLVLRSHLLVLLQSKVDFQHSPL 656 (788)
Q Consensus 580 ~l~~l~v~diM~~--~~vv~l~~~~tv~~a~~~L~~~~~~~fPVVd~~~~~~-~~lvGiI~r~dL~~lL~~~~~~~~~~~ 656 (788)
.+...+|+|+|++ + ++++++++++.++.+.|.+++++.+||+|+ + ++++|+|+.+|+.+.+.+..
T Consensus 19 ~l~~~~v~diM~~~~~-~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~----~~~~lvGivt~~dl~~~~~~~~------- 86 (148)
T 3lv9_A 19 EFEEKKIREIMVPRTD-MVCIYESDSEEKILAILKEEGVTRYPVCRK----NKDDILGFVHIRDLYNQKINEN------- 86 (148)
T ss_dssp GGGTCBGGGTSEETTT-CCCEETTCCHHHHHHHHHHSCCSEEEEESS----STTSEEEEEEHHHHHHHHHHHS-------
T ss_pred ccCCCCHHHccccHHH-eEEECCCCCHHHHHHHHHHCCCCEEEEEcC----CCCcEEEEEEHHHHHHHHhcCC-------
Confidence 3568899999998 8 999999999999999999999999999997 6 79999999999988654321
Q ss_pred CCCCCCCCCccccccccccccCCCCCCCccccccCccccccccCcccccCCCCceecCCCCHHHHHHHHHHcCCCEEEEe
Q 003889 657 PCDTRGGSKPISHSFSEFVKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVV 736 (788)
Q Consensus 657 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~di~~~~~~~~~~idl~~~m~~~p~tV~~~~sl~~a~~lf~~~glr~lpVV 736 (788)
..+++++| +++.++++++++.+++++|.+.+.+++||+
T Consensus 87 -----------------------------------------~~~v~~~m-~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vv 124 (148)
T 3lv9_A 87 -----------------------------------------KIELEEIL-RDIIYISENLTIDKALERIRKEKLQLAIVV 124 (148)
T ss_dssp -----------------------------------------CCCGGGTC-BCCEEEETTSBHHHHHHHHHHHTCSEEEEE
T ss_pred -----------------------------------------CccHHHhc-CCCeEECCCCCHHHHHHHHHhcCCeEEEEE
Confidence 12244558 889999999999999999999999999999
Q ss_pred cCCCeEEEEEeHhhhhhhhcCC
Q 003889 737 PRASRVIGLITRKDLLIEDGED 758 (788)
Q Consensus 737 d~~g~lvGIITr~DLl~~~~~~ 758 (788)
|++|+++|+||++|+++++..+
T Consensus 125 d~~g~~~Giit~~dil~~l~~~ 146 (148)
T 3lv9_A 125 DEYGGTSGVVTIEDILEEIVGE 146 (148)
T ss_dssp CTTSSEEEEEEHHHHHHHHHHT
T ss_pred eCCCCEEEEEEHHHHHHHHhCc
Confidence 9999999999999999987654
No 8
>3lhh_A CBS domain protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG, cell membrane; HET: MSE AMP; 2.10A {Shewanella oneidensis}
Probab=99.72 E-value=3.4e-17 Score=160.70 Aligned_cols=129 Identities=19% Similarity=0.263 Sum_probs=108.7
Q ss_pred hhcccchhhhcc--CCceEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCC-cEEEEEEeHHHHHHHHhcccccCCCCC
Q 003889 580 KMRQMTAKEACG--AQKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGE-RLVIGLVLRSHLLVLLQSKVDFQHSPL 656 (788)
Q Consensus 580 ~l~~l~v~diM~--~~~vv~l~~~~tv~~a~~~L~~~~~~~fPVVd~~~~~~-~~lvGiI~r~dL~~lL~~~~~~~~~~~ 656 (788)
.+..++|+|+|+ ++ ++++++++++.++++.|.+++++.+||+|+ + ++++|+|+.+|+++.+.+..
T Consensus 38 ~l~~~~v~diM~~~~~-~~~v~~~~~v~~a~~~m~~~~~~~~pVvd~----~~~~lvGivt~~dl~~~~~~~~------- 105 (172)
T 3lhh_A 38 RLDERTISSLMVPRSD-IVFLDLNLPLDANLRTVMQSPHSRFPVCRN----NVDDMVGIISAKQLLSESIAGE------- 105 (172)
T ss_dssp -----CTTTTSEEGGG-CCCEETTSCHHHHHHHHHTCCCSEEEEESS----STTSEEEEEEHHHHHHHHHTTC-------
T ss_pred ccCCCCHHHhCccHHH-eEEEcCCCCHHHHHHHHHhCCCCEEEEEeC----CCCeEEEEEEHHHHHHHHhhcC-------
Confidence 356789999999 56 899999999999999999999999999997 6 89999999999988654321
Q ss_pred CCCCCCCCCccccccccccccCCCCCCCccccccCccccccccCcccccCCCCceecCCCCHHHHHHHHHHcCCCEEEEe
Q 003889 657 PCDTRGGSKPISHSFSEFVKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVV 736 (788)
Q Consensus 657 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~di~~~~~~~~~~idl~~~m~~~p~tV~~~~sl~~a~~lf~~~glr~lpVV 736 (788)
..+++++| +++.+|++++++.+++++|.+.+.+++||+
T Consensus 106 -----------------------------------------~~~v~~im-~~~~~v~~~~~l~~a~~~m~~~~~~~~pVv 143 (172)
T 3lhh_A 106 -----------------------------------------RLELVDLV-KNCNFVPNSLSGMELLEHFRTTGSQMVFVV 143 (172)
T ss_dssp -----------------------------------------CCCGGGGC-BCCEEEETTCCHHHHHHHHHHHTCSEEEEE
T ss_pred -----------------------------------------cccHHHHh-cCCeEeCCCCCHHHHHHHHHHcCCeEEEEE
Confidence 12345559 899999999999999999999999999999
Q ss_pred cCCCeEEEEEeHhhhhhhhcCCCccc
Q 003889 737 PRASRVIGLITRKDLLIEDGEDSTTV 762 (788)
Q Consensus 737 d~~g~lvGIITr~DLl~~~~~~~~~~ 762 (788)
|++|+++|+||++|+++++..+..++
T Consensus 144 d~~g~lvGiit~~Dil~~l~~~~~de 169 (172)
T 3lhh_A 144 DEYGDLKGLVTLQDMMDALTGEFFQE 169 (172)
T ss_dssp CTTSCEEEEEEHHHHHHHHHTTCC--
T ss_pred eCCCCEEEEeeHHHHHHHHhCCCccc
Confidence 99999999999999999988766543
No 9
>3i8n_A Uncharacterized protein VP2912; APC64273.1, vibrio parahaemolyticus RIMD 2210633, structural genomics, PSI-2; 2.15A {Vibrio parahaemolyticus}
Probab=99.71 E-value=2.4e-17 Score=153.74 Aligned_cols=125 Identities=19% Similarity=0.259 Sum_probs=103.8
Q ss_pred hcccchhhhccCC-ceEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCC-cEEEEEEeHHHHHHHHhcccccCCCCCCC
Q 003889 581 MRQMTAKEACGAQ-KVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGE-RLVIGLVLRSHLLVLLQSKVDFQHSPLPC 658 (788)
Q Consensus 581 l~~l~v~diM~~~-~vv~l~~~~tv~~a~~~L~~~~~~~fPVVd~~~~~~-~~lvGiI~r~dL~~lL~~~~~~~~~~~~~ 658 (788)
++.++++|+|+++ +++++++++++.++.+.|.+++++.+||+|+ + ++++|+|+.+|+.+.+.++.
T Consensus 3 l~~~~v~~iM~~~~~v~~v~~~~~~~~a~~~m~~~~~~~~pVvd~----~~~~~~Givt~~dl~~~~~~~~--------- 69 (130)
T 3i8n_A 3 AQDVPVTQVMTPRPVVFRVDATMTINEFLDKHKDTPFSRPLVYSE----QKDNIIGFVHRLELFKMQQSGS--------- 69 (130)
T ss_dssp ----CCTTTSCCBCCCCEEETTSBHHHHHHHTTTCSCSCCEEESS----STTCEEEECCHHHHHHHHHTTT---------
T ss_pred cCcCCHhhCCCcHHHEEEEcCCCCHHHHHHHHHhCCCCEEEEEeC----CCCcEEEEEEHHHHHHHHhcCC---------
Confidence 5678999999952 1678999999999999999999999999997 5 89999999999988764422
Q ss_pred CCCCCCCccccccccccccCCCCCCCccccccCccccccccCcccccCCCCceecCCCCHHHHHHHHHHcCCCEEEEecC
Q 003889 659 DTRGGSKPISHSFSEFVKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPR 738 (788)
Q Consensus 659 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~di~~~~~~~~~~idl~~~m~~~p~tV~~~~sl~~a~~lf~~~glr~lpVVd~ 738 (788)
. ..+++++| +++.++++++++.+++++|.+.+.+++||+|+
T Consensus 70 ----------------------~----------------~~~v~~~m-~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~ 110 (130)
T 3i8n_A 70 ----------------------G----------------QKQLGAVM-RPIQVVLNNTALPKVFDQMMTHRLQLALVVDE 110 (130)
T ss_dssp ----------------------T----------------TSBHHHHS-EECCEEETTSCHHHHHHHHHHHTCCEEEEECT
T ss_pred ----------------------C----------------cCCHHHHh-cCCcCcCCCCcHHHHHHHHHHcCCeEEEEEcC
Confidence 0 11234458 45889999999999999999999999999999
Q ss_pred CCeEEEEEeHhhhhhhhcC
Q 003889 739 ASRVIGLITRKDLLIEDGE 757 (788)
Q Consensus 739 ~g~lvGIITr~DLl~~~~~ 757 (788)
+|+++|+||++|++++...
T Consensus 111 ~g~~vGivt~~dil~~l~g 129 (130)
T 3i8n_A 111 YGTVLGLVTLEDIFEHLVG 129 (130)
T ss_dssp TSCEEEEEEHHHHHHHHHT
T ss_pred CCCEEEEEEHHHHHHHHcC
Confidence 9999999999999998653
No 10
>3kpb_A Uncharacterized protein MJ0100; CBS domain, S-adenosylmethionine, conformational change, unknown function; HET: SAM; 1.60A {Methanocaldococcus jannaschii} SCOP: d.37.1.0 PDB: 3kpd_A* 3kpc_A*
Probab=99.71 E-value=6.5e-17 Score=148.51 Aligned_cols=120 Identities=17% Similarity=0.256 Sum_probs=107.2
Q ss_pred cchhhhccCCceEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCCcEEEEEEeHHHHHHHHhcccccCCCCCCCCCCCC
Q 003889 584 MTAKEACGAQKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCDTRGG 663 (788)
Q Consensus 584 l~v~diM~~~~vv~l~~~~tv~~a~~~L~~~~~~~fPVVd~~~~~~~~lvGiI~r~dL~~lL~~~~~~~~~~~~~~~~~~ 663 (788)
.+++|+|+++ ++++++++++.++.+.|.+++++.+||+|+ +++++|+|+++|+.+.+.+..
T Consensus 1 ~~v~~im~~~-~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~----~~~~~G~vt~~dl~~~~~~~~-------------- 61 (122)
T 3kpb_A 1 TLVKDILSKP-PITAHSNISIMEAAKILIKHNINHLPIVDE----HGKLVGIITSWDIAKALAQNK-------------- 61 (122)
T ss_dssp CBHHHHCCSC-CCCEETTSBHHHHHHHHHHHTCSCEEEECT----TSBEEEEECHHHHHHHHHTTC--------------
T ss_pred CchHHhhCCC-CEEeCCCCcHHHHHHHHHHcCCCeEEEECC----CCCEEEEEEHHHHHHHHHhcc--------------
Confidence 3789999998 999999999999999999999999999997 799999999999988754422
Q ss_pred CCccccccccccccCCCCCCCccccccCccccccccCcccccCCCCceecCCCCHHHHHHHHHHcCCCEEEEecCCCeEE
Q 003889 664 SKPISHSFSEFVKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVI 743 (788)
Q Consensus 664 ~~~~~~~~~~~~~~~~~~~~~i~di~~~~~~~~~~idl~~~m~~~p~tV~~~~sl~~a~~lf~~~glr~lpVVd~~g~lv 743 (788)
.+++++|++++.++++++++.+++++|.+.+.+++||+|++|+++
T Consensus 62 -----------------------------------~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~~ 106 (122)
T 3kpb_A 62 -----------------------------------KTIEEIMTRNVITAHEDEPVDHVAIKMSKYNISGVPVVDDYRRVV 106 (122)
T ss_dssp -----------------------------------CBGGGTSBSSCCCEETTSBHHHHHHHHHHHTCSEEEEECTTCBEE
T ss_pred -----------------------------------cCHHHHhcCCCeEECCCCCHHHHHHHHHHhCCCeEEEECCCCCEE
Confidence 124455889999999999999999999999999999999999999
Q ss_pred EEEeHhhhhhhhcC
Q 003889 744 GLITRKDLLIEDGE 757 (788)
Q Consensus 744 GIITr~DLl~~~~~ 757 (788)
|+||++|+++++.+
T Consensus 107 Givt~~dl~~~l~~ 120 (122)
T 3kpb_A 107 GIVTSEDISRLFGG 120 (122)
T ss_dssp EEEEHHHHHHHHC-
T ss_pred EEEeHHHHHHHhhc
Confidence 99999999998764
No 11
>3lfr_A Putative metal ION transporter; CBS, AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 1.53A {Pseudomonas syringae}
Probab=99.71 E-value=2e-17 Score=155.69 Aligned_cols=128 Identities=23% Similarity=0.304 Sum_probs=104.1
Q ss_pred ccchhhhcc--CCceEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCC-cEEEEEEeHHHHHHHHhcccccCCCCCCCC
Q 003889 583 QMTAKEACG--AQKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGE-RLVIGLVLRSHLLVLLQSKVDFQHSPLPCD 659 (788)
Q Consensus 583 ~l~v~diM~--~~~vv~l~~~~tv~~a~~~L~~~~~~~fPVVd~~~~~~-~~lvGiI~r~dL~~lL~~~~~~~~~~~~~~ 659 (788)
+++|+|+|+ ++ ++++++++++.++++.|.+++++.+||+|+ + ++++|+|+.+||++.+.+..
T Consensus 2 ~~~v~~iM~~~~~-~~~v~~~~~v~~a~~~m~~~~~~~~pVvd~----~~~~~vGivt~~dl~~~~~~~~---------- 66 (136)
T 3lfr_A 2 DLQVRDIMVPRSQ-MISIKATQTPREFLPAVIDAAHSRYPVIGE----SHDDVLGVLLAKDLLPLILKAD---------- 66 (136)
T ss_dssp -CBHHHHSEEGGG-CCCEETTCCHHHHHHHHHHHCCSEEEEESS----STTCEEEEEEGGGGGGGGGSSS----------
T ss_pred CCChHhccccHHH-EEEEcCCCCHHHHHHHHHhCCCCEEEEEcC----CCCcEEEEEEHHHHHHHHHhcc----------
Confidence 578999999 45 899999999999999999999999999997 5 79999999999976543211
Q ss_pred CCCCCCccccccccccccCCCCCCCccccccCccccccccCcccccCCCCceecCCCCHHHHHHHHHHcCCCEEEEecCC
Q 003889 660 TRGGSKPISHSFSEFVKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRA 739 (788)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~i~di~~~~~~~~~~idl~~~m~~~p~tV~~~~sl~~a~~lf~~~glr~lpVVd~~ 739 (788)
....+++++|++ +.++++++++.+++++|.+.+.+++||+|++
T Consensus 67 ------------------------------------~~~~~v~~~m~~-~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~ 109 (136)
T 3lfr_A 67 ------------------------------------GDSDDVKKLLRP-ATFVPESKRLNVLLREFRANHNHMAIVIDEY 109 (136)
T ss_dssp ------------------------------------GGGCCGGGTCBC-CCEEETTCBHHHHHHHHHHHTCCEEEEECTT
T ss_pred ------------------------------------CCCcCHHHHcCC-CeEECCCCcHHHHHHHHHhcCCeEEEEEeCC
Confidence 011235556865 8999999999999999999999999999998
Q ss_pred CeEEEEEeHhhhhhhhcCCCccc
Q 003889 740 SRVIGLITRKDLLIEDGEDSTTV 762 (788)
Q Consensus 740 g~lvGIITr~DLl~~~~~~~~~~ 762 (788)
|+++|+||++|+++++..+..++
T Consensus 110 g~lvGiit~~Dil~~l~~~~~de 132 (136)
T 3lfr_A 110 GGVAGLVTIEDVLEQIVGDIEDE 132 (136)
T ss_dssp SCEEEEEEHHHHHTTC-------
T ss_pred CCEEEEEEHHHHHHHHhCCCcCc
Confidence 99999999999999887665443
No 12
>3jtf_A Magnesium and cobalt efflux protein; CBS domain, CORC, AMP, structural genomics, PSI-2, protein S initiative; HET: MSE AMP; 2.00A {Bordetella parapertussis}
Probab=99.70 E-value=3.4e-17 Score=152.55 Aligned_cols=123 Identities=20% Similarity=0.304 Sum_probs=103.7
Q ss_pred cccchhhhcc--CCceEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCC-cEEEEEEeHHHHHHHHhcccccCCCCCCC
Q 003889 582 RQMTAKEACG--AQKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGE-RLVIGLVLRSHLLVLLQSKVDFQHSPLPC 658 (788)
Q Consensus 582 ~~l~v~diM~--~~~vv~l~~~~tv~~a~~~L~~~~~~~fPVVd~~~~~~-~~lvGiI~r~dL~~lL~~~~~~~~~~~~~ 658 (788)
.+++|+|+|+ ++ ++++++++++.++.+.|.+++++.+||+|+ + ++++|+|+.+|+++.+.+.
T Consensus 3 ~~~~v~diM~~~~~-~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~----~~~~~~Givt~~dl~~~~~~~---------- 67 (129)
T 3jtf_A 3 AERTVADIMVPRSR-MDLLDISQPLPQLLATIIETAHSRFPVYED----DRDNIIGILLAKDLLRYMLEP---------- 67 (129)
T ss_dssp -CCBHHHHCEEGGG-CCCEETTSCHHHHHHHHHHSCCSEEEEESS----STTCEEEEEEGGGGGGGGTCT----------
T ss_pred CCCCHHHhCccHHH-eEEECCCCCHHHHHHHHHHcCCCEEEEEcC----CCCcEEEEEEHHHHHhHhccC----------
Confidence 4679999999 56 899999999999999999999999999987 4 8999999999996543210
Q ss_pred CCCCCCCccccccccccccCCCCCCCccccccCccccccccCcccccCCCCceecCCCCHHHHHHHHHHcCCCEEEEecC
Q 003889 659 DTRGGSKPISHSFSEFVKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPR 738 (788)
Q Consensus 659 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~di~~~~~~~~~~idl~~~m~~~p~tV~~~~sl~~a~~lf~~~glr~lpVVd~ 738 (788)
..+++++|+ ++.++++++++.+++++|.+.+.+++||+|+
T Consensus 68 ---------------------------------------~~~v~~~m~-~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~ 107 (129)
T 3jtf_A 68 ---------------------------------------ALDIRSLVR-PAVFIPEVKRLNVLLREFRASRNHLAIVIDE 107 (129)
T ss_dssp ---------------------------------------TSCGGGGCB-CCCEEETTCBHHHHHHHHHTSSCCEEEEECC
T ss_pred ---------------------------------------CcCHHHHhC-CCeEeCCCCcHHHHHHHHHhcCCeEEEEEeC
Confidence 112444575 4889999999999999999999999999999
Q ss_pred CCeEEEEEeHhhhhhhhcCCC
Q 003889 739 ASRVIGLITRKDLLIEDGEDS 759 (788)
Q Consensus 739 ~g~lvGIITr~DLl~~~~~~~ 759 (788)
+|+++|+||++|+++++..+.
T Consensus 108 ~g~~~Giit~~Dil~~l~gei 128 (129)
T 3jtf_A 108 HGGISGLVTMEDVLEQIVGDI 128 (129)
T ss_dssp -CCEEEEEEHHHHHHHHHHTC
T ss_pred CCCEEEEEEHHHHHHHHhCCC
Confidence 999999999999999876543
No 13
>3oco_A Hemolysin-like protein containing CBS domains; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.20A {Oenococcus oeni}
Probab=99.70 E-value=4.7e-17 Score=156.31 Aligned_cols=129 Identities=17% Similarity=0.206 Sum_probs=109.0
Q ss_pred hcccchhhhccC--CceEEecCcccHHHHHHHHhhCCCCeeEEe-eCCCCCCcEEEEEEeHHHHHHHHhcccccCCCCCC
Q 003889 581 MRQMTAKEACGA--QKVVSLPRIIKVADVVSILRTNKHNGFPVI-DHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLP 657 (788)
Q Consensus 581 l~~l~v~diM~~--~~vv~l~~~~tv~~a~~~L~~~~~~~fPVV-d~~~~~~~~lvGiI~r~dL~~lL~~~~~~~~~~~~ 657 (788)
+...+|+|+|++ + ++++++++++.++.+.|.+++++.+||+ |+. +++++|+|+++|+.+.+....
T Consensus 17 l~~~~v~~iM~~~~~-~~~v~~~~~~~~a~~~m~~~~~~~~pVv~d~~---~~~lvGivt~~dl~~~~~~~~-------- 84 (153)
T 3oco_A 17 MNDKVASDVMVDRTS-MSVVDVDETIADALLLYLEEQYSRFPVTADND---KDKIIGYAYNYDIVRQARIDD-------- 84 (153)
T ss_dssp HHHCBHHHHSEEGGG-CCCEETTSBHHHHHHHHHHHCCSEEEEEETTE---EEEEEEEEEHHHHHHHHHHHT--------
T ss_pred cCCCEeeeEecchhh-eEEEcCCCCHHHHHHHHHhCCCCEEEEEECCC---CCcEEEEEEHHHHHhHHhcCC--------
Confidence 567899999996 6 8999999999999999999999999999 541 489999999999988654321
Q ss_pred CCCCCCCCccccccccccccCCCCCCCccccccCccccccccCcccccCCCCceecCCCCHHHHHHHHHHcCCCEEEEec
Q 003889 658 CDTRGGSKPISHSFSEFVKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVP 737 (788)
Q Consensus 658 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~di~~~~~~~~~~idl~~~m~~~p~tV~~~~sl~~a~~lf~~~glr~lpVVd 737 (788)
..+++++| +++.++++++++.+++++|.+.+.+++||+|
T Consensus 85 ----------------------------------------~~~v~~~m-~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd 123 (153)
T 3oco_A 85 ----------------------------------------KAKISTIM-RDIVSVPENMKVPDVMEEMSAHRVPMAIVID 123 (153)
T ss_dssp ----------------------------------------TSBGGGTC-BCCEEEETTSBHHHHHHHHHHTTCSCEEEEC
T ss_pred ----------------------------------------CCcHHHHh-CCCeEECCCCCHHHHHHHHHHcCCcEEEEEe
Confidence 12345559 8999999999999999999999999999999
Q ss_pred CCCeEEEEEeHhhhhhhhcCCCccc
Q 003889 738 RASRVIGLITRKDLLIEDGEDSTTV 762 (788)
Q Consensus 738 ~~g~lvGIITr~DLl~~~~~~~~~~ 762 (788)
++|+++|+||++|+++++..+..++
T Consensus 124 ~~g~~vGivt~~dil~~l~~~~~de 148 (153)
T 3oco_A 124 EYGGTSGIITDKDVYEELFGNLRDE 148 (153)
T ss_dssp TTSCEEEEECHHHHHHHHHC-----
T ss_pred CCCCEEEEeeHHHHHHHHhccCCCc
Confidence 9999999999999999988766443
No 14
>3nqr_A Magnesium and cobalt efflux protein CORC; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: AMP; 2.00A {Salmonella typhimurium}
Probab=99.70 E-value=2.6e-17 Score=152.80 Aligned_cols=122 Identities=21% Similarity=0.364 Sum_probs=102.2
Q ss_pred ccchhhhccC--CceEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCC-cEEEEEEeHHHHHHHHhcccccCCCCCCCC
Q 003889 583 QMTAKEACGA--QKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGE-RLVIGLVLRSHLLVLLQSKVDFQHSPLPCD 659 (788)
Q Consensus 583 ~l~v~diM~~--~~vv~l~~~~tv~~a~~~L~~~~~~~fPVVd~~~~~~-~~lvGiI~r~dL~~lL~~~~~~~~~~~~~~ 659 (788)
+++++|+|++ + ++++++++++.++.+.|.+++++.+||+|+ + ++++|+|+.+|+.+.+.+..
T Consensus 2 ~~~v~diM~~~~~-~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~----~~~~~vGivt~~dl~~~~~~~~---------- 66 (127)
T 3nqr_A 2 DQRVRDIMIPRSQ-MITLKRNQTLDECLDVIIESAHSRFPVISE----DKDHIEGILMAKDLLPFMRSDA---------- 66 (127)
T ss_dssp -CBHHHHSEEGGG-CCCEETTCCHHHHHHHHHHHCCSEEEEESS----STTCEEEEEEGGGGGGGGSTTC----------
T ss_pred CcCHHHhcccHHH-eEEEcCCCCHHHHHHHHHhCCCCEEEEEcC----CCCcEEEEEEHHHHHHHHhccC----------
Confidence 5789999994 5 889999999999999999999999999998 6 79999999999966432211
Q ss_pred CCCCCCccccccccccccCCCCCCCccccccCccccccccCcccccCCCCceecCCCCHHHHHHHHHHcCCCEEEEecCC
Q 003889 660 TRGGSKPISHSFSEFVKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRA 739 (788)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~i~di~~~~~~~~~~idl~~~m~~~p~tV~~~~sl~~a~~lf~~~glr~lpVVd~~ 739 (788)
...+++++|.+ +.++++++++.+++++|.+.+.+++||+|++
T Consensus 67 -------------------------------------~~~~v~~~m~~-~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~ 108 (127)
T 3nqr_A 67 -------------------------------------EAFSMDKVLRT-AVVVPESKRVDRMLKEFRSQRYHMAIVIDEF 108 (127)
T ss_dssp -------------------------------------CCCCHHHHCBC-CCEEETTCBHHHHHHHHHHTTCCEEEEECTT
T ss_pred -------------------------------------CCCCHHHHcCC-CeEECCCCcHHHHHHHHHhcCCeEEEEEeCC
Confidence 01234455854 7899999999999999999999999999988
Q ss_pred CeEEEEEeHhhhhhhhcC
Q 003889 740 SRVIGLITRKDLLIEDGE 757 (788)
Q Consensus 740 g~lvGIITr~DLl~~~~~ 757 (788)
|+++|+||++|+++++..
T Consensus 109 g~~~Giit~~dll~~l~g 126 (127)
T 3nqr_A 109 GGVSGLVTIEDILELIVG 126 (127)
T ss_dssp SCEEEEEEHHHHHHHC--
T ss_pred CCEEEEEEHHHHHHHHhC
Confidence 999999999999987643
No 15
>3fhm_A Uncharacterized protein ATU1752; CBS domain, prokaryotic, bound nucleotide, AMP, NADH, struct genomics, PSI-2; HET: AMP NAI; 2.70A {Agrobacterium tumefaciens str}
Probab=99.69 E-value=1.5e-16 Score=154.77 Aligned_cols=138 Identities=13% Similarity=0.193 Sum_probs=114.7
Q ss_pred CCCchhhhcccchhhhccC---CceEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCCcEEEEEEeHHHHHHHHhcccc
Q 003889 574 ESRPKYKMRQMTAKEACGA---QKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVD 650 (788)
Q Consensus 574 ~~~~~~~l~~l~v~diM~~---~~vv~l~~~~tv~~a~~~L~~~~~~~fPVVd~~~~~~~~lvGiI~r~dL~~lL~~~~~ 650 (788)
.......+..++|+|+|++ + ++++++++++.++++.|.+++++.+||+|+ +++++|+|+.+|+.+.+....
T Consensus 14 ~~~~~~~l~~~~v~dim~~~~~~-~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~----~~~~~Givt~~dl~~~~~~~~- 87 (165)
T 3fhm_A 14 RENLYFQGMATFVKDLLDRKGRD-VVTVGPDVSIGEAAGTLHAHKIGAVVVTDA----DGVVLGIFTERDLVKAVAGQG- 87 (165)
T ss_dssp --CCCCSSSSCBHHHHHHHHCSC-CCEECTTSBHHHHHHHHHHHTCSEEEEECT----TSCEEEEEEHHHHHHHHHHHG-
T ss_pred cchhhHhhhhcCHHHHhccCCCC-CeEECCCCCHHHHHHHHHHcCCCEEEEEcC----CCeEEEEEEHHHHHHHHHhcC-
Confidence 3344556788999999995 6 899999999999999999999999999998 789999999999988765431
Q ss_pred cCCCCCCCCCCCCCCccccccccccccCCCCCCCccccccCccccccccCcccccCCCCceecCCCCHHHHHHHHHHcCC
Q 003889 651 FQHSPLPCDTRGGSKPISHSFSEFVKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGL 730 (788)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~di~~~~~~~~~~idl~~~m~~~p~tV~~~~sl~~a~~lf~~~gl 730 (788)
.. . ...+++++|.+++.+|++++++.+++++|.+.+.
T Consensus 88 ~~---------------------------~----------------~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~ 124 (165)
T 3fhm_A 88 AA---------------------------S----------------LQQSVSVAMTKNVVRCQHNSTTDQLMEIMTGGRF 124 (165)
T ss_dssp GG---------------------------G----------------GTSBGGGTSBSSCCCBCTTCBHHHHHHHHHHHTC
T ss_pred Cc---------------------------c----------------ccCCHHHHhcCCCeEECCCCcHHHHHHHHHHcCC
Confidence 00 0 0123455699999999999999999999999999
Q ss_pred CEEEEecCCCeEEEEEeHhhhhhhhcCCCcc
Q 003889 731 RHIFVVPRASRVIGLITRKDLLIEDGEDSTT 761 (788)
Q Consensus 731 r~lpVVd~~g~lvGIITr~DLl~~~~~~~~~ 761 (788)
+++||+|+ |+++|+||++|+++++.++..+
T Consensus 125 ~~lpVvd~-g~~~Giit~~dil~~~~~~~~~ 154 (165)
T 3fhm_A 125 RHVPVEEN-GRLAGIISIGDVVKARIGEIEA 154 (165)
T ss_dssp SEEEEEET-TEEEEEEEHHHHHHHTTCC---
T ss_pred CEEEEEEC-CEEEEEEEHHHHHHHHHHHHHH
Confidence 99999999 9999999999999998776543
No 16
>3hf7_A Uncharacterized CBS-domain protein; CSB-domain PAIR, AMP, PSI, MCSG, STR genomics, midwest center for structural genomics; HET: AMP; 2.75A {Klebsiella pneumoniae subsp}
Probab=99.69 E-value=8.7e-17 Score=150.10 Aligned_cols=126 Identities=19% Similarity=0.163 Sum_probs=105.8
Q ss_pred ccchhhhccC--CceEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCCcEEEEEEeHHHHHHHHhcccccCCCCCCCCC
Q 003889 583 QMTAKEACGA--QKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCDT 660 (788)
Q Consensus 583 ~l~v~diM~~--~~vv~l~~~~tv~~a~~~L~~~~~~~fPVVd~~~~~~~~lvGiI~r~dL~~lL~~~~~~~~~~~~~~~ 660 (788)
+++++|+|++ + ++++++++++.++++.|.+++++.+||+|+. +++++|+|+.+|+++.+.+..
T Consensus 1 ~~~v~~iM~~~~~-~~~v~~~~~v~~a~~~m~~~~~~~~pVv~~~---~~~lvGivt~~dl~~~~~~~~----------- 65 (130)
T 3hf7_A 1 KVSVNDIMVPRNE-IVGIDINDDWKSIVRQLTHSPHGRIVLYRDS---LDDAISMLRVREAYRLMTEKK----------- 65 (130)
T ss_dssp CCBHHHHSEEGGG-CCEEETTSCHHHHHHHHHTCSSSEEEEESSS---GGGEEEEEEHHHHHHHHTSSS-----------
T ss_pred CcCHHHhCccHHH-EEEEcCCCCHHHHHHHHHHCCCCeEEEEcCC---CCcEEEEEEHHHHHHHHhccC-----------
Confidence 3689999974 5 8999999999999999999999999999751 489999999999988754322
Q ss_pred CCCCCccccccccccccCCCCCCCccccccCccccccccCcccccCCCCceecCCCCHHHHHHHHHHcCCCEEEEecCCC
Q 003889 661 RGGSKPISHSFSEFVKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRAS 740 (788)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~~~~~~i~di~~~~~~~~~~idl~~~m~~~p~tV~~~~sl~~a~~lf~~~glr~lpVVd~~g 740 (788)
.. ...+++++| +++.++++++++.+++++|.+.+.+++||+|++|
T Consensus 66 -----------------------~~-----------~~~~v~~~m-~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g 110 (130)
T 3hf7_A 66 -----------------------EF-----------TKEIMLRAA-DEIYFVPEGTPLSTQLVKFQRNKKKVGLVVDEYG 110 (130)
T ss_dssp -----------------------CC-----------CHHHHHHHS-BCCCEEETTCBHHHHHHHHHHHCCCEEEEECTTS
T ss_pred -----------------------cc-----------chhhHHHhc-cCCeEeCCCCcHHHHHHHHHhcCCeEEEEEcCCC
Confidence 00 012244557 6789999999999999999999999999999989
Q ss_pred eEEEEEeHhhhhhhhcCC
Q 003889 741 RVIGLITRKDLLIEDGED 758 (788)
Q Consensus 741 ~lvGIITr~DLl~~~~~~ 758 (788)
+++|+||++|++++...+
T Consensus 111 ~lvGiit~~Dil~~l~g~ 128 (130)
T 3hf7_A 111 DIQGLVTVEDILEEIVGD 128 (130)
T ss_dssp CEEEEEEHHHHHHHHHC-
T ss_pred CEEEEeeHHHHHHHHhCC
Confidence 999999999999987654
No 17
>3gby_A Uncharacterized protein CT1051; CBS domain, structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Chlorobium tepidum tls}
Probab=99.68 E-value=1e-16 Score=148.89 Aligned_cols=125 Identities=18% Similarity=0.055 Sum_probs=107.9
Q ss_pred cccchhhhccCCceEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCCcEEEEEEeHHHHHHHHhcccccCCCCCCCCCC
Q 003889 582 RQMTAKEACGAQKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCDTR 661 (788)
Q Consensus 582 ~~l~v~diM~~~~vv~l~~~~tv~~a~~~L~~~~~~~fPVVd~~~~~~~~lvGiI~r~dL~~lL~~~~~~~~~~~~~~~~ 661 (788)
.+++++|+|.++ ++++++++++.++.+.|.+++++.+||+|+ ++++|+|+++|+.+.+.+..
T Consensus 3 ~s~~v~~~m~~~-~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~-----~~~~Givt~~dl~~~~~~~~------------ 64 (128)
T 3gby_A 3 ASVTFSYLAETD-YPVFTLGGSTADAARRLAASGCACAPVLDG-----ERYLGMVHLSRLLEGRKGWP------------ 64 (128)
T ss_dssp TTCBGGGGCBCC-SCCEETTSBHHHHHHHHHHHTCSEEEEEET-----TEEEEEEEHHHHHTTCSSSC------------
T ss_pred cceEHHHhhcCC-cceECCCCCHHHHHHHHHHCCCcEEEEEEC-----CEEEEEEEHHHHHHHHhhCC------------
Confidence 368999999999 999999999999999999999999999986 79999999999965432211
Q ss_pred CCCCccccccccccccCCCCCCCccccccCccccccccCcccccCCCCceecCCCCHHHHHHHHHHcCCCEEEEecCCCe
Q 003889 662 GGSKPISHSFSEFVKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASR 741 (788)
Q Consensus 662 ~~~~~~~~~~~~~~~~~~~~~~~i~di~~~~~~~~~~idl~~~m~~~p~tV~~~~sl~~a~~lf~~~glr~lpVVd~~g~ 741 (788)
. ...+++++|++++.++++++++.+++++|.+.+.+++||+|++|+
T Consensus 65 ------------------~----------------~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~lpVvd~~g~ 110 (128)
T 3gby_A 65 ------------------T----------------VKEKLGEELLETVRSYRPGEQLFDNLISVAAAKCSVVPLADEDGR 110 (128)
T ss_dssp ------------------C----------------TTCBCCGGGCBCCCCBCTTSBGGGSHHHHHHCSSSEEEEECTTCB
T ss_pred ------------------c----------------ccCcHHHHccCCCcEECCCCCHHHHHHHHHhCCCcEEEEECCCCC
Confidence 0 012345569999999999999999999999999999999998899
Q ss_pred EEEEEeHhhhhhhhcCC
Q 003889 742 VIGLITRKDLLIEDGED 758 (788)
Q Consensus 742 lvGIITr~DLl~~~~~~ 758 (788)
++|+||++|+++++.+.
T Consensus 111 ~~Giit~~dll~~l~~~ 127 (128)
T 3gby_A 111 YEGVVSRKRILGFLAER 127 (128)
T ss_dssp EEEEEEHHHHHHHHHTT
T ss_pred EEEEEEHHHHHHHHHhh
Confidence 99999999999987653
No 18
>2ef7_A Hypothetical protein ST2348; CBS-domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.10A {Sulfolobus tokodaii} SCOP: d.37.1.1
Probab=99.68 E-value=2.2e-16 Score=147.45 Aligned_cols=126 Identities=20% Similarity=0.319 Sum_probs=109.4
Q ss_pred cccchhhhccCCceEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCCcEEEEEEeHHHHHHHHhcccccCCCCCCCCCC
Q 003889 582 RQMTAKEACGAQKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCDTR 661 (788)
Q Consensus 582 ~~l~v~diM~~~~vv~l~~~~tv~~a~~~L~~~~~~~fPVVd~~~~~~~~lvGiI~r~dL~~lL~~~~~~~~~~~~~~~~ 661 (788)
++++++|+|+++ ++++++++++.++.+.|.+++++.+||+|+ ++++|+|+++|+.+.+.+..
T Consensus 2 ~~~~v~~im~~~-~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~-----~~~~Givt~~dl~~~~~~~~------------ 63 (133)
T 2ef7_A 2 EEEIVKEYMKTQ-VISVTKDAKLNDIAKVMTEKNIGSVIVVDG-----NKPVGIITERDIVKAIGKGK------------ 63 (133)
T ss_dssp CCCBGGGTSBCS-CCEEETTCBHHHHHHHHHHHTCSEEEEEET-----TEEEEEEEHHHHHHHHHTTC------------
T ss_pred CcccHHHhccCC-CEEECCCCcHHHHHHHHHhcCCCEEEEEEC-----CEEEEEEcHHHHHHHHhcCC------------
Confidence 568999999998 999999999999999999999999999985 79999999999987654422
Q ss_pred CCCCccccccccccccCCCCCCCccccccCccccccccCcccccCCCCceecCCCCHHHHHHHHHHcCCCEEEEecCCCe
Q 003889 662 GGSKPISHSFSEFVKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASR 741 (788)
Q Consensus 662 ~~~~~~~~~~~~~~~~~~~~~~~i~di~~~~~~~~~~idl~~~m~~~p~tV~~~~sl~~a~~lf~~~glr~lpVVd~~g~ 741 (788)
. ...+++++|++++.++++++++.++++.|.+.+.+++||+|++|+
T Consensus 64 ------------------~----------------~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~ 109 (133)
T 2ef7_A 64 ------------------S----------------LETKAEEFMTASLITIREDSPITGALALMRQFNIRHLPVVDDKGN 109 (133)
T ss_dssp ------------------C----------------TTCBGGGTSEECCCCEETTSBHHHHHHHHHHHTCSEEEEECTTSC
T ss_pred ------------------C----------------cccCHHHHcCCCCEEECCCCCHHHHHHHHHHcCCCEEEEECCCCe
Confidence 0 012345558889999999999999999999999999999998899
Q ss_pred EEEEEeHhhhhhhhcCCC
Q 003889 742 VIGLITRKDLLIEDGEDS 759 (788)
Q Consensus 742 lvGIITr~DLl~~~~~~~ 759 (788)
++|+||++|+++++.+..
T Consensus 110 ~~Giit~~dll~~~~~~~ 127 (133)
T 2ef7_A 110 LKGIISIRDITRAIDDMF 127 (133)
T ss_dssp EEEEEEHHHHHHHHHHHC
T ss_pred EEEEEEHHHHHHHHHHHH
Confidence 999999999999876544
No 19
>2rih_A Conserved protein with 2 CBS domains; bateman domain, AMP binding protein, ligand-BIND protein; 2.10A {Pyrobaculum aerophilum} SCOP: d.37.1.1 PDB: 2rif_A
Probab=99.68 E-value=4.2e-16 Score=147.25 Aligned_cols=122 Identities=19% Similarity=0.296 Sum_probs=106.4
Q ss_pred ccchhhhccCCceEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCCc--EEEEEEeHHHHHHHHhcccccCCCCCCCCC
Q 003889 583 QMTAKEACGAQKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGER--LVIGLVLRSHLLVLLQSKVDFQHSPLPCDT 660 (788)
Q Consensus 583 ~l~v~diM~~~~vv~l~~~~tv~~a~~~L~~~~~~~fPVVd~~~~~~~--~lvGiI~r~dL~~lL~~~~~~~~~~~~~~~ 660 (788)
+++++|+|+++ ++++++++++.++.+.|.+++++.+||+|+ ++ +++|+|+++|+.+.+.+..
T Consensus 4 ~~~v~~im~~~-~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~----~~~~~~~Givt~~dl~~~~~~~~----------- 67 (141)
T 2rih_A 4 AIRTSELLKRP-PVSLPETATIREVATELAKNRVGLAVLTAR----DNPKRPVAVVSERDILRAVAQRL----------- 67 (141)
T ss_dssp -CBGGGGCCSC-CEEEETTCBHHHHHHHHHHHTCSEEEEEET----TEEEEEEEEEEHHHHHHHHHTTC-----------
T ss_pred ceEHHHHhcCC-CeEeCCCCcHHHHHHHHHHcCCCEEEEEcC----CCcceeEEEEEHHHHHHHHhcCC-----------
Confidence 47899999998 999999999999999999999999999998 67 9999999999988654321
Q ss_pred CCCCCccccccccccccCCCCCCCccccccCccccccccCcccccCCCCceecCCCCHHHHHHHHHHcCCCEEEEecCCC
Q 003889 661 RGGSKPISHSFSEFVKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRAS 740 (788)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~~~~~~i~di~~~~~~~~~~idl~~~m~~~p~tV~~~~sl~~a~~lf~~~glr~lpVVd~~g 740 (788)
. ...+++++|++++.+++++ ++.+++++|.+.+.+++||+|++|
T Consensus 68 -------------------~----------------~~~~v~~~m~~~~~~v~~~-~l~~a~~~m~~~~~~~l~Vvd~~g 111 (141)
T 2rih_A 68 -------------------D----------------LDGPAMPIANSPITVLDTD-PVHVAAEKMRRHNIRHVVVVNKNG 111 (141)
T ss_dssp -------------------C----------------TTSBSGGGCBCCCEEETTS-BHHHHHHHHHHHTCSEEEEECTTS
T ss_pred -------------------C----------------CCCCHHHHcCCCCeEEcCC-CHHHHHHHHHHcCCeEEEEEcCCC
Confidence 0 0123455599999999999 999999999999999999999889
Q ss_pred eEEEEEeHhhhhhhhc
Q 003889 741 RVIGLITRKDLLIEDG 756 (788)
Q Consensus 741 ~lvGIITr~DLl~~~~ 756 (788)
+++|+||++|++++..
T Consensus 112 ~~~Giit~~dll~~~~ 127 (141)
T 2rih_A 112 ELVGVLSIRDLCFERA 127 (141)
T ss_dssp CEEEEEEHHHHHSCHH
T ss_pred cEEEEEEHHHHHHHHH
Confidence 9999999999998754
No 20
>3ocm_A Putative membrane protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADP; 1.80A {Bordetella parapertussis}
Probab=99.67 E-value=2.3e-16 Score=155.06 Aligned_cols=129 Identities=15% Similarity=0.167 Sum_probs=110.6
Q ss_pred hcccchhhhccC--CceEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCC-cEEEEEEeHHHHHHHHhcccccCCCCCC
Q 003889 581 MRQMTAKEACGA--QKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGE-RLVIGLVLRSHLLVLLQSKVDFQHSPLP 657 (788)
Q Consensus 581 l~~l~v~diM~~--~~vv~l~~~~tv~~a~~~L~~~~~~~fPVVd~~~~~~-~~lvGiI~r~dL~~lL~~~~~~~~~~~~ 657 (788)
+..++|+|+|++ + ++++++++++.++++.|.+++++.+||+|+ + ++++|+|+.+||+..+.+..
T Consensus 33 l~~~~v~diM~~~~~-v~~v~~~~tv~ea~~~m~~~~~~~~pVvd~----~~~~lvGivt~~Dl~~~~~~~~-------- 99 (173)
T 3ocm_A 33 LAERSIRSIMTPRTD-VSWVNIDDDAATIRQQLTAAPHSFFPVCRG----SLDEVVGIGRAKDLVADLITEG-------- 99 (173)
T ss_dssp HTTSCSTTTSEEGGG-CCCEETTSCHHHHHHHHHHSSCSEEEEESS----STTSEEEEEEHHHHHHHHHHHS--------
T ss_pred cCCCCHHHhCCcHHH-eEEEeCCCCHHHHHHHHHhCCCCEEEEEeC----CCCCEEEEEEHHHHHHHHhcCC--------
Confidence 567899999974 5 889999999999999999999999999987 4 79999999999987654321
Q ss_pred CCCCCCCCccccccccccccCCCCCCCccccccCccccccccCcccccCCCCceecCCCCHHHHHHHHHHcCCCEEEEec
Q 003889 658 CDTRGGSKPISHSFSEFVKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVP 737 (788)
Q Consensus 658 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~di~~~~~~~~~~idl~~~m~~~p~tV~~~~sl~~a~~lf~~~glr~lpVVd 737 (788)
..+++ |.+++.+|++++++.+++++|.+.+.+++||+|
T Consensus 100 ----------------------------------------~~~v~--~~~~~~~v~~~~~l~~al~~m~~~~~~~~~Vvd 137 (173)
T 3ocm_A 100 ----------------------------------------RVRRN--RLRDPIIVHESIGILRLMDTLKRSRGQLVLVAD 137 (173)
T ss_dssp ----------------------------------------SCCGG--GSBCCCEECGGGCHHHHHHHHHHSTTCCEEEEC
T ss_pred ----------------------------------------cchhH--hcCCCeEECCCCcHHHHHHHHHHcCCeEEEEEe
Confidence 01233 347788999999999999999999999999999
Q ss_pred CCCeEEEEEeHhhhhhhhcCCCccchh
Q 003889 738 RASRVIGLITRKDLLIEDGEDSTTVEL 764 (788)
Q Consensus 738 ~~g~lvGIITr~DLl~~~~~~~~~~~~ 764 (788)
++|+++||||++|+++++..+..++..
T Consensus 138 e~g~lvGiIT~~Dil~~l~~~i~de~~ 164 (173)
T 3ocm_A 138 EFGAIEGLVTPIDVFEAIAGEFPDEDE 164 (173)
T ss_dssp TTCCEEEEECHHHHHHHHHCCCCCTTS
T ss_pred CCCCEEEEEeHHHHHHHHhCcCCCccc
Confidence 989999999999999999877655443
No 21
>3k6e_A CBS domain protein; streptococcus pneumoniae TIGR4, structural genomics, PSI-2, protein structure initiative; 2.81A {Streptococcus pneumoniae}
Probab=99.66 E-value=1.6e-16 Score=153.47 Aligned_cols=128 Identities=15% Similarity=0.163 Sum_probs=105.6
Q ss_pred cchhhhccC--CceEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCCcEEEEEEeHHHHHHHHhcccccCCCCCCCCCC
Q 003889 584 MTAKEACGA--QKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCDTR 661 (788)
Q Consensus 584 l~v~diM~~--~~vv~l~~~~tv~~a~~~L~~~~~~~fPVVd~~~~~~~~lvGiI~r~dL~~lL~~~~~~~~~~~~~~~~ 661 (788)
.+++++|++ + ++++++++|+.+++++|.+++++++||+|+ +++++|+|+.+|+.+.+.... ....
T Consensus 15 ~~~~~iM~P~~~-v~~v~~~~t~~~a~~~m~~~~~s~~pVvd~----~~~lvGiit~~Di~~~~~~~~-~~~~------- 81 (156)
T 3k6e_A 15 GQEETFLTPAKN-LAVLIDTHNADHATLLLSQMTYTRVPVVTD----EKQFVGTIGLRDIMAYQMEHD-LSQE------- 81 (156)
T ss_dssp TTGGGGEEETTS-SCCEETTSBHHHHHHHHTTSSSSEEEEECC-----CBEEEEEEHHHHHHHHHHHT-CCHH-------
T ss_pred ccHHHhCcchhH-eEEECCcCCHHHHHHHHHHcCCcEEEEEcC----CCcEEEEEEecchhhhhhhcc-cccc-------
Confidence 468899986 5 999999999999999999999999999998 789999999999988765432 0000
Q ss_pred CCCCccccccccccccCCCCCCCccccccCccccccccCcccccCCCCceecCCCCHHHHHHHHHHcCCCEEEEecCCCe
Q 003889 662 GGSKPISHSFSEFVKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASR 741 (788)
Q Consensus 662 ~~~~~~~~~~~~~~~~~~~~~~~i~di~~~~~~~~~~idl~~~m~~~p~tV~~~~sl~~a~~lf~~~glr~lpVVd~~g~ 741 (788)
.....+++++|++++.++++++++.+++++|.+.+ .+||||++|+
T Consensus 82 ---------------------------------~~~~~~v~~im~~~~~~v~~~~~l~~~~~~m~~~~--~lpVVd~~g~ 126 (156)
T 3k6e_A 82 ---------------------------------IMADTDIVHMTKTDVAVVSPDFTITEVLHKLVDES--FLPVVDAEGI 126 (156)
T ss_dssp ---------------------------------HHTTSBGGGTCBCSCCCBCTTCCHHHHHHHTTTSS--EEEEECTTSB
T ss_pred ---------------------------------cccccCHHHhhcCCceecccccHHHHHHHHHHHcC--CeEEEecCCE
Confidence 00123456669999999999999999999998765 5999999999
Q ss_pred EEEEEeHhhhhhhhcCCC
Q 003889 742 VIGLITRKDLLIEDGEDS 759 (788)
Q Consensus 742 lvGIITr~DLl~~~~~~~ 759 (788)
++||||++|+++++.+..
T Consensus 127 l~GiiT~~Dil~~~~~~~ 144 (156)
T 3k6e_A 127 FQGIITRKSILKAVNALL 144 (156)
T ss_dssp EEEEEEHHHHHHHHHHHS
T ss_pred EEEEEEHHHHHHHHHHHh
Confidence 999999999999886433
No 22
>2p9m_A Hypothetical protein MJ0922; structural genomics, collaboratory for structural genomics, secsg; 2.59A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID}
Probab=99.66 E-value=2.7e-16 Score=147.61 Aligned_cols=127 Identities=20% Similarity=0.384 Sum_probs=108.1
Q ss_pred hhcccchhhhccCCceEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCCcEEEEEEeHHHH-HHHHhcccccCCCCCCC
Q 003889 580 KMRQMTAKEACGAQKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHL-LVLLQSKVDFQHSPLPC 658 (788)
Q Consensus 580 ~l~~l~v~diM~~~~vv~l~~~~tv~~a~~~L~~~~~~~fPVVd~~~~~~~~lvGiI~r~dL-~~lL~~~~~~~~~~~~~ 658 (788)
.+.+.+++|+|+++ ++++++++++.++.+.|.+++++.+||+|+ +++++|+|+++|+ .+.+....
T Consensus 4 ~l~~~~v~~im~~~-~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~----~~~~~Givt~~dl~~~~~~~~~--------- 69 (138)
T 2p9m_A 4 TLKNIKVKDVMTKN-VITAKRHEGVVEAFEKMLKYKISSLPVIDD----ENKVIGIVTTTDIGYNLIRDKY--------- 69 (138)
T ss_dssp -CTTCBGGGTSBCS-CCCEETTSBHHHHHHHHHHHTCCEEEEECT----TCBEEEEEEHHHHHHHHTTTCC---------
T ss_pred ccccCCHHHhhcCC-ceEECCCCcHHHHHHHHHHCCCcEEEEECC----CCeEEEEEEHHHHHHHHHhhcc---------
Confidence 45678999999988 999999999999999999999999999997 6899999999999 77543211
Q ss_pred CCCCCCCccccccccccccCCCCCCCccccccCccccccccCcccccCCCCceecCCCCHHHHHHHHHHcC-----CCEE
Q 003889 659 DTRGGSKPISHSFSEFVKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLG-----LRHI 733 (788)
Q Consensus 659 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~di~~~~~~~~~~idl~~~m~~~p~tV~~~~sl~~a~~lf~~~g-----lr~l 733 (788)
. ...+++++|++++.++++++++.++++.|.+.+ .+++
T Consensus 70 ---------------------~----------------~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~~~~~~l 112 (138)
T 2p9m_A 70 ---------------------T----------------LETTIGDVMTKDVITIHEDASILEAIKKMDISGKKEEIINQL 112 (138)
T ss_dssp ---------------------C----------------SSCBHHHHSCSSCCCEETTSBHHHHHHHHTCC-----CCCEE
T ss_pred ---------------------c----------------CCcCHHHHhCCCcEEECCCCCHHHHHHHHHhcCCccccccEE
Confidence 0 012244559899999999999999999999999 9999
Q ss_pred EEecCCCeEEEEEeHhhhhhhhcC
Q 003889 734 FVVPRASRVIGLITRKDLLIEDGE 757 (788)
Q Consensus 734 pVVd~~g~lvGIITr~DLl~~~~~ 757 (788)
||+|++|+++|+||++|+++++.+
T Consensus 113 ~Vvd~~g~~~Giit~~dll~~~~~ 136 (138)
T 2p9m_A 113 PVVDKNNKLVGIISDGDIIRTISK 136 (138)
T ss_dssp EEECTTSBEEEEEEHHHHHHHHHH
T ss_pred EEECCCCeEEEEEEHHHHHHHHHh
Confidence 999988999999999999987654
No 23
>1o50_A CBS domain-containing predicted protein TM0935; CBS-domain PAIR fold, structural genomics, joint center for structural genomics, JCSG; 1.87A {Thermotoga maritima} SCOP: d.37.1.1
Probab=99.66 E-value=4.7e-16 Score=149.84 Aligned_cols=143 Identities=12% Similarity=0.145 Sum_probs=111.6
Q ss_pred hhhcccchhhhccCCceEEecCcccHHHHHHHHhhCCCCe-eEEeeCCCCCCcEEEEEEeHHHHHHHHhcc-cccCCCCC
Q 003889 579 YKMRQMTAKEACGAQKVVSLPRIIKVADVVSILRTNKHNG-FPVIDHSRNGERLVIGLVLRSHLLVLLQSK-VDFQHSPL 656 (788)
Q Consensus 579 ~~l~~l~v~diM~~~~vv~l~~~~tv~~a~~~L~~~~~~~-fPVVd~~~~~~~~lvGiI~r~dL~~lL~~~-~~~~~~~~ 656 (788)
+....++|+|+|+++ ++++++++++.++.+.|.+++++. +||+|+ + +++|+|+++|+.+.+... ..+.....
T Consensus 11 ~~~~~~~v~~im~~~-~~~v~~~~tl~ea~~~m~~~~~~~~~~Vvd~----~-~~vGivt~~dl~~~~~~~~~~~~~~~~ 84 (157)
T 1o50_A 11 HHMKVKDVCKLISLK-PTVVEEDTPIEEIVDRILEDPVTRTVYVARD----N-KLVGMIPVMHLLKVSGFHFFGFIPKEE 84 (157)
T ss_dssp TTCBHHHHTTSSCCC-CEEECTTCBHHHHHHHHHHSTTCCEEEEEET----T-EEEEEEEHHHHHHHHHHHHHCCCC---
T ss_pred hhhccccHhhcccCC-CceECCCCCHHHHHHHHHhCCCCccEEEEEC----C-EEEEEEEHHHHHHHHhhhHHhhhccHH
Confidence 345678999999998 999999999999999999999999 999998 6 999999999998765321 00000000
Q ss_pred CCCCCCCCCccccccccccccCCCCCCCccccccCccccccccCcccccCCCCceecCCCCHHHHHHHHHHcCCCEEEEe
Q 003889 657 PCDTRGGSKPISHSFSEFVKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVV 736 (788)
Q Consensus 657 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~di~~~~~~~~~~idl~~~m~~~p~tV~~~~sl~~a~~lf~~~glr~lpVV 736 (788)
.+.+. . ......+++++|++ +.++++++++.+++++|.+.+.+++||+
T Consensus 85 ----------------~~~~~-------~--------~~~~~~~v~~im~~-~~~v~~~~~l~~a~~~m~~~~~~~lpVv 132 (157)
T 1o50_A 85 ----------------LIRSS-------M--------KRLIAKNASEIMLD-PVYVHMDTPLEEALKLMIDNNIQEMPVV 132 (157)
T ss_dssp --------------------C-------C--------CCCSSCBHHHHCBC-CCCBCTTSBHHHHHHHHHHHTCSEEEEE
T ss_pred ----------------HHHHH-------H--------HHHcCCcHHHHcCC-CeEECCCCCHHHHHHHHHHCCCcEEEEE
Confidence 00000 0 00012345667999 9999999999999999999999999999
Q ss_pred cCCCeEEEEEeHhhhhhhhcCCC
Q 003889 737 PRASRVIGLITRKDLLIEDGEDS 759 (788)
Q Consensus 737 d~~g~lvGIITr~DLl~~~~~~~ 759 (788)
|++|+++|+||++|+++++.++.
T Consensus 133 d~~g~~vGiit~~dll~~l~~~~ 155 (157)
T 1o50_A 133 DEKGEIVGDLNSLEILLALWKGR 155 (157)
T ss_dssp CTTSCEEEEEEHHHHHHHHHHSC
T ss_pred cCCCEEEEEEEHHHHHHHHHHhh
Confidence 98899999999999999876543
No 24
>2yzi_A Hypothetical protein PH0107; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; 2.25A {Pyrococcus horikoshii} SCOP: d.37.1.1
Probab=99.66 E-value=6.5e-16 Score=145.12 Aligned_cols=128 Identities=13% Similarity=0.243 Sum_probs=109.3
Q ss_pred hcccchhhhccCCceEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCCcEEEEEEeHHHHHH-HHhcccccCCCCCCCC
Q 003889 581 MRQMTAKEACGAQKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLV-LLQSKVDFQHSPLPCD 659 (788)
Q Consensus 581 l~~l~v~diM~~~~vv~l~~~~tv~~a~~~L~~~~~~~fPVVd~~~~~~~~lvGiI~r~dL~~-lL~~~~~~~~~~~~~~ 659 (788)
+...+++|+|+++ ++++++++++.++.+.|.+++++.+||+|+ +++++|+|+.+|+.+ .+.+..
T Consensus 4 l~~~~v~~im~~~-~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~----~~~~~Givt~~dl~~~~~~~~~---------- 68 (138)
T 2yzi_A 4 DMKAPIKVYMTKK-LLGVKPSTSVQEASRLMMEFDVGSLVVIND----DGNVVGFFTKSDIIRRVIVPGL---------- 68 (138)
T ss_dssp CTTSBGGGTCBCC-CCEECTTSBHHHHHHHHHHHTCSEEEEECT----TSCEEEEEEHHHHHHHTTTTCC----------
T ss_pred hhhhhHHHHhcCC-CeEECCCCcHHHHHHHHHHcCCCEEEEEcC----CCcEEEEEeHHHHHHHHHhcCC----------
Confidence 4568999999998 999999999999999999999999999997 689999999999963 221110
Q ss_pred CCCCCCccccccccccccCCCCCCCccccccCccccccccCcccccCCCCceecCCCCHHHHHHHHHHcCCCEEEEecCC
Q 003889 660 TRGGSKPISHSFSEFVKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRA 739 (788)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~i~di~~~~~~~~~~idl~~~m~~~p~tV~~~~sl~~a~~lf~~~glr~lpVVd~~ 739 (788)
. ...+++++|++++.++++++++.+++++|.+.+.+++ |+|++
T Consensus 69 --------------------~----------------~~~~v~~~m~~~~~~v~~~~~l~~~~~~m~~~~~~~l-Vvd~~ 111 (138)
T 2yzi_A 69 --------------------P----------------YDIPVERIMTRNLITANVNTPLGEVLRKMAEHRIKHI-LIEEE 111 (138)
T ss_dssp --------------------C----------------TTSBGGGTCBCSCCEEETTSBHHHHHHHHHHHTCSEE-EEEET
T ss_pred --------------------c----------------ccCCHHHHhhCCCeEECCCCcHHHHHHHHHhcCCCEE-EECCC
Confidence 0 0123455699999999999999999999999999999 99988
Q ss_pred CeEEEEEeHhhhhhhhcCCCc
Q 003889 740 SRVIGLITRKDLLIEDGEDST 760 (788)
Q Consensus 740 g~lvGIITr~DLl~~~~~~~~ 760 (788)
|+++|+||++|+++++.++..
T Consensus 112 g~~~Giit~~dil~~~~~~~~ 132 (138)
T 2yzi_A 112 GKIVGIFTLSDLLEASRRRLE 132 (138)
T ss_dssp TEEEEEEEHHHHHHHHHCCSC
T ss_pred CCEEEEEEHHHHHHHHHHHHH
Confidence 999999999999999876553
No 25
>3lqn_A CBS domain protein; csgid, structural genomics, unknown function, center for structural genomics of infectious diseases; 1.80A {Bacillus anthracis} SCOP: d.37.1.0
Probab=99.66 E-value=3.9e-16 Score=149.01 Aligned_cols=137 Identities=15% Similarity=0.152 Sum_probs=112.5
Q ss_pred chhhhcccchhhhcc--CCceEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCCcEEEEEEeHHHHHHHHhcccccCCC
Q 003889 577 PKYKMRQMTAKEACG--AQKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHS 654 (788)
Q Consensus 577 ~~~~l~~l~v~diM~--~~~vv~l~~~~tv~~a~~~L~~~~~~~fPVVd~~~~~~~~lvGiI~r~dL~~lL~~~~~~~~~ 654 (788)
....+..++++|+|+ ++ ++++++++++.++.+.|.+++++.+||+|+ +++++|+|+++||.+.+.....+.
T Consensus 8 ~~~~l~~~~v~~im~~~~~-~~~v~~~~~l~~a~~~~~~~~~~~~pVvd~----~~~~~Givt~~dl~~~~~~~~~~~-- 80 (150)
T 3lqn_A 8 PKDEFQQIFVKDLMISSEK-VAHVQIGNGLEHALLVLVKSGYSAIPVLDP----MYKLHGLISTAMILDGILGLERIE-- 80 (150)
T ss_dssp CHHHHHHCBHHHHSEEGGG-SCCBCTTSBHHHHHHHHHHHTCSEEEEECT----TCBEEEEEEHHHHHHHTBCSSSBC--
T ss_pred HHHhhhcCChhhcccCCCc-eEEECCCCcHHHHHHHHHHcCCcEEEEECC----CCCEEEEEEHHHHHHHHHhhcccc--
Confidence 345678899999999 46 899999999999999999999999999998 789999999999987653211000
Q ss_pred CCCCCCCCCCCccccccccccccCCCCCCCccccccCccccccccCcccccCCCCceecCCCCHHHHHHHHHHcCCCEEE
Q 003889 655 PLPCDTRGGSKPISHSFSEFVKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIF 734 (788)
Q Consensus 655 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~di~~~~~~~~~~idl~~~m~~~p~tV~~~~sl~~a~~lf~~~glr~lp 734 (788)
.+.....+++++|++++.++++++++.+++++|.+.+. +|
T Consensus 81 --------------------------------------~~~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~~~~~~~--l~ 120 (150)
T 3lqn_A 81 --------------------------------------FERLEEMKVEQVMKQDIPVLKLEDSFAKALEMTIDHPF--IC 120 (150)
T ss_dssp --------------------------------------GGGGGGCBGGGTCBSSCCEEETTCBHHHHHHHHHHCSE--EE
T ss_pred --------------------------------------hhHHhcCCHHHHhcCCCceeCCCCCHHHHHHHHHhCCE--EE
Confidence 00001234566799999999999999999999999986 99
Q ss_pred EecCCCeEEEEEeHhhhhhhhcCCCc
Q 003889 735 VVPRASRVIGLITRKDLLIEDGEDST 760 (788)
Q Consensus 735 VVd~~g~lvGIITr~DLl~~~~~~~~ 760 (788)
|+|++|+++|+||++|+++++.+...
T Consensus 121 Vvd~~g~~~Giit~~dil~~l~~~~~ 146 (150)
T 3lqn_A 121 AVNEDGYFEGILTRRAILKLLNKKVR 146 (150)
T ss_dssp EECTTCBEEEEEEHHHHHHHHHHHC-
T ss_pred EECCCCcEEEEEEHHHHHHHHHHHhH
Confidence 99988999999999999998876543
No 26
>3k2v_A Putative D-arabinose 5-phosphate isomerase; KPSF-like protein, CBS domain, structural genomics, PSI-2, P structure initiative; HET: MSE CMK; 1.95A {Klebsiella pneumoniae subsp} PDB: 3fna_A*
Probab=99.65 E-value=4.2e-16 Score=148.83 Aligned_cols=121 Identities=11% Similarity=0.177 Sum_probs=104.9
Q ss_pred ccchhhhccC--CceEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCCcEEEEEEeHHHHHHHHhcccccCCCCCCCCC
Q 003889 583 QMTAKEACGA--QKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCDT 660 (788)
Q Consensus 583 ~l~v~diM~~--~~vv~l~~~~tv~~a~~~L~~~~~~~fPVVd~~~~~~~~lvGiI~r~dL~~lL~~~~~~~~~~~~~~~ 660 (788)
.++++|+|++ + ++++++++++.++.+.|.+++++.+||+|+ +++++|+|+++|+.+.+.+.. .
T Consensus 27 ~~~v~dim~~~~~-~~~v~~~~~~~~a~~~m~~~~~~~~~Vvd~----~~~~~Givt~~dl~~~~~~~~----~------ 91 (149)
T 3k2v_A 27 LLRVNDIMHTGDE-IPHVGLQATLRDALLEITRKNLGMTAICDD----DMNIIGIFTDGDLRRVFDTGV----D------ 91 (149)
T ss_dssp TSBGGGTSBCGGG-SCEECTTCBHHHHHHHHHHHTSSEEEEECT----TCBEEEEEEHHHHHHHHCSSS----C------
T ss_pred ccCHHHHhcCCCC-CeEECCCCcHHHHHHHHHhCCCcEEEEECC----CCcEEEEecHHHHHHHHhcCC----C------
Confidence 3599999998 8 999999999999999999999999999998 789999999999988764322 0
Q ss_pred CCCCCccccccccccccCCCCCCCccccccCccccccccCcccccCCCCceecCCCCHHHHHHHHHHcCCCEEEEecCCC
Q 003889 661 RGGSKPISHSFSEFVKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRAS 740 (788)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~~~~~~i~di~~~~~~~~~~idl~~~m~~~p~tV~~~~sl~~a~~lf~~~glr~lpVVd~~g 740 (788)
. ...+++++|++++.+|++++++.+++++|.+.+.+++||+|++
T Consensus 92 -------------------~----------------~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~- 135 (149)
T 3k2v_A 92 -------------------M----------------RDASIADVMTRGGIRIRPGTLAVDALNLMQSRHITCVLVADGD- 135 (149)
T ss_dssp -------------------C----------------TTCBHHHHSEESCCEECTTCBHHHHHHHHHHHTCSEEEEEETT-
T ss_pred -------------------c----------------ccCcHHHHcCCCCeEECCCCCHHHHHHHHHHcCCCEEEEecCC-
Confidence 0 0123455599999999999999999999999999999999985
Q ss_pred eEEEEEeHhhhhhh
Q 003889 741 RVIGLITRKDLLIE 754 (788)
Q Consensus 741 ~lvGIITr~DLl~~ 754 (788)
+++|+||++|++++
T Consensus 136 ~~~Giit~~dil~a 149 (149)
T 3k2v_A 136 HLLGVVHMHDLLRA 149 (149)
T ss_dssp EEEEEEEHHHHTCC
T ss_pred EEEEEEEHHHhhcC
Confidence 99999999999863
No 27
>4gqw_A CBS domain-containing protein CBSX1, chloroplasti; thioredoxin, plant, protein binding; 2.20A {Arabidopsis thaliana}
Probab=99.65 E-value=3.5e-16 Score=149.08 Aligned_cols=141 Identities=24% Similarity=0.345 Sum_probs=108.5
Q ss_pred cccchhhhccC--CceEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCCcEEEEEEeHHHHHHHHhcccccCCCCCCCC
Q 003889 582 RQMTAKEACGA--QKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCD 659 (788)
Q Consensus 582 ~~l~v~diM~~--~~vv~l~~~~tv~~a~~~L~~~~~~~fPVVd~~~~~~~~lvGiI~r~dL~~lL~~~~~~~~~~~~~~ 659 (788)
+.++++|+|++ + ++++++++++.++.+.|.+++++.+||+|+ +++++|+|+++|+...+....
T Consensus 3 ~~~~v~~im~~~~~-~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~----~~~~~G~vt~~dl~~~~~~~~---------- 67 (152)
T 4gqw_A 3 GVYTVGEFMTKKED-LHVVKPTTTVDEALELLVENRITGFPVIDE----DWKLVGLVSDYDLLALDSGDS---------- 67 (152)
T ss_dssp CCSBGGGTSEESTT-CCCBCTTSBHHHHHHHHHHTTCSEEEEECT----TCBEEEEEEHHHHTTCC--------------
T ss_pred ceEEhhhccCCCCC-CeEECCCCcHHHHHHHHHHcCCceEEEEeC----CCeEEEEEEHHHHHHhhcccC----------
Confidence 46899999998 7 999999999999999999999999999998 789999999999965322110
Q ss_pred CCCCCCccccccccccccCCCCCCCccccccCccccccccCcccccCCCCceecCCCCHHHHHHHHHHcCCCEEEEecCC
Q 003889 660 TRGGSKPISHSFSEFVKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRA 739 (788)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~i~di~~~~~~~~~~idl~~~m~~~p~tV~~~~sl~~a~~lf~~~glr~lpVVd~~ 739 (788)
.+ ..+....... ......++.++|++++.++++++++.+++++|.+.+.+++||+|++
T Consensus 68 ~~-------~~~~~~~~~~---------------~~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~ 125 (152)
T 4gqw_A 68 TW-------KTFNAVQKLL---------------SKTNGKLVGDLMTPAPLVVEEKTNLEDAAKILLETKYRRLPVVDSD 125 (152)
T ss_dssp CC-------HHHHHHHTC--------------------CCBHHHHSEESCCCEESSSBHHHHHHHHHHSSCCEEEEECTT
T ss_pred cc-------cchHHHHHHH---------------HHhccccHHHhcCCCceEECCCCcHHHHHHHHHHCCCCEEEEECCC
Confidence 00 0000000000 0001234566699999999999999999999999999999999988
Q ss_pred CeEEEEEeHhhhhhhhcCCC
Q 003889 740 SRVIGLITRKDLLIEDGEDS 759 (788)
Q Consensus 740 g~lvGIITr~DLl~~~~~~~ 759 (788)
|+++|+||++|+++++.+..
T Consensus 126 g~~~Giit~~dil~~~~~~~ 145 (152)
T 4gqw_A 126 GKLVGIITRGNVVRAALQIK 145 (152)
T ss_dssp SBEEEEEEHHHHHHHHHC--
T ss_pred CcEEEEEEHHHHHHHHHhcc
Confidence 99999999999999987654
No 28
>1pbj_A Hypothetical protein; structural genomics, domain, PSI, protein structure initiative; 1.40A {Methanothermobacter thermautotrophicusdelta H} SCOP: d.37.1.1
Probab=99.64 E-value=1.2e-15 Score=140.56 Aligned_cols=122 Identities=12% Similarity=0.169 Sum_probs=104.9
Q ss_pred cchhhhccCCceEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCCcEEEEEEeHHHHHHHHhcccccCCCCCCCCCCCC
Q 003889 584 MTAKEACGAQKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCDTRGG 663 (788)
Q Consensus 584 l~v~diM~~~~vv~l~~~~tv~~a~~~L~~~~~~~fPVVd~~~~~~~~lvGiI~r~dL~~lL~~~~~~~~~~~~~~~~~~ 663 (788)
++++|+|+++ ++++++++++.++.+.|.+++++.+||+|+ ++++|+|+++|+.+.+.+.. .
T Consensus 1 m~v~~~m~~~-~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~-----~~~~G~it~~dl~~~~~~~~--~----------- 61 (125)
T 1pbj_A 1 MRVEDVMVTD-VDTIDITASLEDVLRNYVENAKGSSVVVKE-----GVRVGIVTTWDVLEAIAEGD--D----------- 61 (125)
T ss_dssp -CHHHHCBCS-CCEEETTCBHHHHHHHHHHHCCCEEEEEET-----TEEEEEEEHHHHHHHHHHTC--C-----------
T ss_pred CCHHHhcCCC-ceEECCCCcHHHHHHHHHHcCCCEEEEEeC-----CeeEEEEeHHHHHHHHhcCC--c-----------
Confidence 5789999998 999999999999999999999999999985 79999999999987654422 0
Q ss_pred CCccccccccccccCCCCCCCccccccCccccccccCcccccCCCCceecCCCCHHHHHHHHHHcCCCEEEEecCCCeEE
Q 003889 664 SKPISHSFSEFVKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVI 743 (788)
Q Consensus 664 ~~~~~~~~~~~~~~~~~~~~~i~di~~~~~~~~~~idl~~~m~~~p~tV~~~~sl~~a~~lf~~~glr~lpVVd~~g~lv 743 (788)
. ...+++++|++++.++++++++.+++++|.+.+.+++||+|+ |+++
T Consensus 62 ----------------~----------------~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~-~~~~ 108 (125)
T 1pbj_A 62 ----------------L----------------AEVKVWEVMERDLVTISPRATIKEAAEKMVKNVVWRLLVEED-DEII 108 (125)
T ss_dssp ----------------T----------------TTSBHHHHCBCGGGEECTTSCHHHHHHHHHHHTCSEEEEEET-TEEE
T ss_pred ----------------c----------------cccCHHHHcCCCCeEECCCCCHHHHHHHHHhcCCcEEEEEEC-CEEE
Confidence 0 012345558889999999999999999999999999999998 9999
Q ss_pred EEEeHhhhhhhhcC
Q 003889 744 GLITRKDLLIEDGE 757 (788)
Q Consensus 744 GIITr~DLl~~~~~ 757 (788)
|+||++|++++..+
T Consensus 109 Gvit~~dl~~~l~~ 122 (125)
T 1pbj_A 109 GVISATDILRAKMA 122 (125)
T ss_dssp EEEEHHHHHHHHC-
T ss_pred EEEEHHHHHHHHHh
Confidence 99999999998764
No 29
>3fv6_A YQZB protein; CBS domain dimer, metabolism regulator, central glycolytic G regulator, transcription; 1.95A {Bacillus subtilis} PDB: 3fwr_A* 3fws_A*
Probab=99.64 E-value=1.1e-15 Score=147.63 Aligned_cols=128 Identities=13% Similarity=0.182 Sum_probs=109.5
Q ss_pred hhhcccchhhhccCCceEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCCcEEEEEEeHHHHHHHHhcccccCCCCCCC
Q 003889 579 YKMRQMTAKEACGAQKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPC 658 (788)
Q Consensus 579 ~~l~~l~v~diM~~~~vv~l~~~~tv~~a~~~L~~~~~~~fPVVd~~~~~~~~lvGiI~r~dL~~lL~~~~~~~~~~~~~ 658 (788)
..+..++|+|+|+++ + ++++++++.++++.|.+++++.+||+|+ +++++|+|+.+|+.+.+..+. .
T Consensus 12 ~~l~~~~v~~im~~~-~-~v~~~~~~~~a~~~m~~~~~~~~~Vvd~----~~~~~Givt~~dl~~~~~~~~-----~--- 77 (159)
T 3fv6_A 12 DKLKKLQVKDFQSIP-V-VIHENVSVYDAICTMFLEDVGTLFVVDR----DAVLVGVLSRKDLLRASIGQQ-----E--- 77 (159)
T ss_dssp HHHTTCBGGGSCBCC-C-EEETTSBHHHHHHHHHHHTCSEEEEECT----TSCEEEEEEHHHHHHHHTSCS-----C---
T ss_pred HHHhhCCHHHHcCCC-E-EECCCCcHHHHHHHHHHCCCCEEEEEcC----CCcEEEEEeHHHHHHHhhccC-----c---
Confidence 456789999999976 5 9999999999999999999999999997 789999999999988653221 0
Q ss_pred CCCCCCCccccccccccccCCCCCCCccccccCccccccccCcccccCC--CCceecCCCCHHHHHHHHHHcCCCEEEEe
Q 003889 659 DTRGGSKPISHSFSEFVKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNP--SPYVVPEDMSLSKVYNLFRQLGLRHIFVV 736 (788)
Q Consensus 659 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~di~~~~~~~~~~idl~~~m~~--~p~tV~~~~sl~~a~~lf~~~glr~lpVV 736 (788)
. ...+++++|++ ++.+|++++++.+++++|.+.+.+++||+
T Consensus 78 ---------------------~----------------~~~~v~~~m~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVv 120 (159)
T 3fv6_A 78 ---------------------L----------------TSVPVHIIMTRMPNITVCRREDYVMDIAKHLIEKQIDALPVI 120 (159)
T ss_dssp ---------------------T----------------TTCBGGGTSEETTSCCCBCTTSBHHHHHHHHHHHTCSEEEEE
T ss_pred ---------------------c----------------cCcCHHHHHcCCCCcEEECCCCCHHHHHHHHHHcCCcEEEEE
Confidence 0 01234555887 88999999999999999999999999999
Q ss_pred cCCC---eEEEEEeHhhhhhhhcC
Q 003889 737 PRAS---RVIGLITRKDLLIEDGE 757 (788)
Q Consensus 737 d~~g---~lvGIITr~DLl~~~~~ 757 (788)
|++| +++|+||++|+++++.+
T Consensus 121 d~~g~~~~~vGiit~~dil~~l~~ 144 (159)
T 3fv6_A 121 KDTDKGFEVIGRVTKTNMTKILVS 144 (159)
T ss_dssp EECSSSEEEEEEEEHHHHHHHHHH
T ss_pred eCCCcceeEEEEEEHHHHHHHHHH
Confidence 9987 99999999999998764
No 30
>1y5h_A Hypothetical protein RV2626C; CBS domain, unknown function; 1.50A {Mycobacterium tuberculosis} SCOP: d.37.1.1 PDB: 1xkf_A
Probab=99.64 E-value=5.7e-16 Score=144.54 Aligned_cols=126 Identities=17% Similarity=0.297 Sum_probs=105.1
Q ss_pred hcccchhhhccCCceEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCCcEEEEEEeHHHHHH-HHhcccccCCCCCCCC
Q 003889 581 MRQMTAKEACGAQKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLV-LLQSKVDFQHSPLPCD 659 (788)
Q Consensus 581 l~~l~v~diM~~~~vv~l~~~~tv~~a~~~L~~~~~~~fPVVd~~~~~~~~lvGiI~r~dL~~-lL~~~~~~~~~~~~~~ 659 (788)
++.++++|+|+++ ++++++++++.++.+.|.+++++.+||+|+ +++++|+|+++|+.. .+.+.. .
T Consensus 5 ~~~~~v~~im~~~-~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~----~~~~~Givt~~dl~~~~~~~~~------~--- 70 (133)
T 1y5h_A 5 FTMTTARDIMNAG-VTCVGEHETLTAAAQYMREHDIGALPICGD----DDRLHGMLTDRDIVIKGLAAGL------D--- 70 (133)
T ss_dssp ---CCHHHHSEET-CCCEETTSBHHHHHHHHHHHTCSEEEEECG----GGBEEEEEEHHHHHHTTGGGTC------C---
T ss_pred hhhcCHHHHhcCC-ceEeCCCCCHHHHHHHHHHhCCCeEEEECC----CCeEEEEEeHHHHHHHHHhcCC------C---
Confidence 4567999999988 999999999999999999999999999987 789999999999973 332211 0
Q ss_pred CCCCCCccccccccccccCCCCCCCccccccCccccccccCcccccCCCCceecCCCCHHHHHHHHHHcCCCEEEEecCC
Q 003889 660 TRGGSKPISHSFSEFVKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRA 739 (788)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~i~di~~~~~~~~~~idl~~~m~~~p~tV~~~~sl~~a~~lf~~~glr~lpVVd~~ 739 (788)
. ...+++++|++++.++++++++.+++++|.+.+.+++||+|+
T Consensus 71 --------------------~----------------~~~~v~~~m~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~- 113 (133)
T 1y5h_A 71 --------------------P----------------NTATAGELARDSIYYVDANASIQEMLNVMEEHQVRRVPVISE- 113 (133)
T ss_dssp --------------------T----------------TTSBHHHHHTTCCCCEETTCCHHHHHHHHHHHTCSEEEEEET-
T ss_pred --------------------c----------------cccCHHHHhcCCCEEECCCCCHHHHHHHHHHcCCCEEEEEEC-
Confidence 0 012345559999999999999999999999999999999998
Q ss_pred CeEEEEEeHhhhhhhhcC
Q 003889 740 SRVIGLITRKDLLIEDGE 757 (788)
Q Consensus 740 g~lvGIITr~DLl~~~~~ 757 (788)
|+++|+||++|+++++.+
T Consensus 114 g~~~Giit~~dil~~l~~ 131 (133)
T 1y5h_A 114 HRLVGIVTEADIARHLPE 131 (133)
T ss_dssp TEEEEEEEHHHHHHTCC-
T ss_pred CEEEEEEEHHHHHHHHHh
Confidence 999999999999988654
No 31
>3oi8_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADN; 1.99A {Neisseria meningitidis serogroup B}
Probab=99.64 E-value=2.4e-16 Score=151.91 Aligned_cols=119 Identities=22% Similarity=0.353 Sum_probs=102.2
Q ss_pred hcccchhhhccC--CceEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCC-cEEEEEEeHHHHHHHHhcccccCCCCCC
Q 003889 581 MRQMTAKEACGA--QKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGE-RLVIGLVLRSHLLVLLQSKVDFQHSPLP 657 (788)
Q Consensus 581 l~~l~v~diM~~--~~vv~l~~~~tv~~a~~~L~~~~~~~fPVVd~~~~~~-~~lvGiI~r~dL~~lL~~~~~~~~~~~~ 657 (788)
+..++|+|+|++ + ++++++++++.++++.|.+++++.+||+|+ + ++++|+|+.+|+.+.+.++
T Consensus 35 l~~~~v~diM~~~~~-~~~v~~~~~i~~a~~~m~~~~~~~~pVvd~----~~~~lvGivt~~dl~~~~~~~--------- 100 (156)
T 3oi8_A 35 FSDLEVRDAMITRSR-MNVLKENDSIERITAYVIDTAHSRFPVIGE----DKDEVLGILHAKDLLKYMFNP--------- 100 (156)
T ss_dssp HTTCBGGGTCEEGGG-CCCEETTCCHHHHHHHHHHHCCSEEEEESS----STTCEEEEEEGGGGGGGSSCG---------
T ss_pred cCCCCHhheeeeHHH-eEEECCCCCHHHHHHHHHHCCCCEEEEEcC----CCCcEEEEEEHHHHHHHHHcC---------
Confidence 567899999997 6 899999999999999999999999999997 5 4999999999996532110
Q ss_pred CCCCCCCCccccccccccccCCCCCCCccccccCccccccccCcccccCCCCceecCCCCHHHHHHHHHHcCCCEEEEec
Q 003889 658 CDTRGGSKPISHSFSEFVKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVP 737 (788)
Q Consensus 658 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~di~~~~~~~~~~idl~~~m~~~p~tV~~~~sl~~a~~lf~~~glr~lpVVd 737 (788)
...+++++|++ +.+|++++++.+++++|.+.+.+++||+|
T Consensus 101 ---------------------------------------~~~~v~~im~~-~~~v~~~~~l~~a~~~m~~~~~~~~~Vvd 140 (156)
T 3oi8_A 101 ---------------------------------------EQFHLKSILRP-AVFVPEGKSLTALLKEFREQRNHMAIVID 140 (156)
T ss_dssp ---------------------------------------GGCCHHHHCBC-CCEEETTSBHHHHHHHHHHTTCCEEEEEC
T ss_pred ---------------------------------------CcccHHHHcCC-CEEECCCCCHHHHHHHHHhcCCeEEEEEC
Confidence 01234555865 88999999999999999999999999999
Q ss_pred CCCeEEEEEeHhhhhh
Q 003889 738 RASRVIGLITRKDLLI 753 (788)
Q Consensus 738 ~~g~lvGIITr~DLl~ 753 (788)
++|+++|+||++|+++
T Consensus 141 ~~g~~~Givt~~Dile 156 (156)
T 3oi8_A 141 EYGGTSGLVTFEDIIE 156 (156)
T ss_dssp TTSSEEEEEEHHHHCC
T ss_pred CCCCEEEEEEHHHhcC
Confidence 9899999999999874
No 32
>3sl7_A CBS domain-containing protein CBSX2; CBS-PAIR protein, redox regulator, plant CBS domain, thiored chloroplast, membrane protein; 1.91A {Arabidopsis thaliana}
Probab=99.63 E-value=2.6e-16 Score=154.68 Aligned_cols=153 Identities=22% Similarity=0.288 Sum_probs=109.0
Q ss_pred ccchhhhccC--CceEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCCcEEEEEEeHHHHHHHHhcccccCCCCCCCCC
Q 003889 583 QMTAKEACGA--QKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCDT 660 (788)
Q Consensus 583 ~l~v~diM~~--~~vv~l~~~~tv~~a~~~L~~~~~~~fPVVd~~~~~~~~lvGiI~r~dL~~lL~~~~~~~~~~~~~~~ 660 (788)
.++|+|+|++ + ++++++++++.++++.|.+++++.+||+|+ +++++|+|+++||.+...... ... ...
T Consensus 3 ~~~v~dim~~~~~-~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~----~~~~~Givt~~dl~~~~~~~~----~~~-~~~ 72 (180)
T 3sl7_A 3 GYTVGDFMTPRQN-LHVVKPSTSVDDALELLVEKKVTGLPVIDD----NWTLVGVVSDYDLLALDSISG----RSQ-NDT 72 (180)
T ss_dssp CCBHHHHSEEGGG-CCCBCTTSBHHHHHHHHHHHTCSEEEEECT----TCBEEEEEEHHHHTCC----------------
T ss_pred ceeHHHhcCCCCC-ceeeCCCCcHHHHHHHHHHcCCCeEEEECC----CCeEEEEEEHHHHHhhhhhcc----ccC-Ccc
Confidence 4789999998 7 999999999999999999999999999998 789999999999964221100 000 000
Q ss_pred CCCCCccccccccccccCCCCCCCccccccCccccccccCcccccCCCCceecCCCCHHHHHHHHHHcCCCEEEEecCCC
Q 003889 661 RGGSKPISHSFSEFVKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRAS 740 (788)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~~~~~~i~di~~~~~~~~~~idl~~~m~~~p~tV~~~~sl~~a~~lf~~~glr~lpVVd~~g 740 (788)
. +............+..-. .......+++++|++++.+|++++++.+++++|.+.+.+++||+|++|
T Consensus 73 -----~-------~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g 139 (180)
T 3sl7_A 73 -----N-------LFPDVDSTWKTFNELQKL-ISKTYGKVVGDLMTPSPLVVRDSTNLEDAARLLLETKFRRLPVVDADG 139 (180)
T ss_dssp --------------------CCCSHHHHHHH-HHTTTTCBHHHHSEESCCCEETTSBHHHHHHHHTTSTTCEEEEECTTC
T ss_pred -----c-------ccccccchhhhhHHHHHH-HhccccccHHHHhCCCceEeCCCCcHHHHHHHHHHcCCCEEEEECCCC
Confidence 0 000000000000000000 000112456777999999999999999999999999999999999889
Q ss_pred eEEEEEeHhhhhhhhcCC
Q 003889 741 RVIGLITRKDLLIEDGED 758 (788)
Q Consensus 741 ~lvGIITr~DLl~~~~~~ 758 (788)
+++|+||++|+++++.+.
T Consensus 140 ~~vGiit~~dil~~~~~~ 157 (180)
T 3sl7_A 140 KLIGILTRGNVVRAALQI 157 (180)
T ss_dssp BEEEEEEHHHHHHHHHHH
T ss_pred eEEEEEEHHHHHHHHHHH
Confidence 999999999999987653
No 33
>3kxr_A Magnesium transporter, putative; cystathionine beta-synthase, Mg2+ transporter, structural GE PSI-2, protein structure initiative; 2.41A {Shewanella oneidensis mr-1}
Probab=99.63 E-value=7.3e-16 Score=155.71 Aligned_cols=126 Identities=14% Similarity=0.114 Sum_probs=107.4
Q ss_pred cccchhhhccCCceEEecCcccHHHHHHHHhhC---CCCeeEEeeCCCCCCcEEEEEEeHHHHHHHHhcccccCCCCCCC
Q 003889 582 RQMTAKEACGAQKVVSLPRIIKVADVVSILRTN---KHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPC 658 (788)
Q Consensus 582 ~~l~v~diM~~~~vv~l~~~~tv~~a~~~L~~~---~~~~fPVVd~~~~~~~~lvGiI~r~dL~~lL~~~~~~~~~~~~~ 658 (788)
...+|+++|+++ +++++++.|+.++++.|++. +++.+||+|+ +++++|+|+.+||+.. ..
T Consensus 52 ~~~~v~~iM~~~-~~~v~~~~tv~eal~~~~~~~~~~~~~~~Vvd~----~~~lvGivt~~dll~~---~~--------- 114 (205)
T 3kxr_A 52 SENEIGRYTDHQ-MLVLSDKATVAQAQRFFRRIELDCNDNLFIVDE----ADKYLGTVRRYDIFKH---EP--------- 114 (205)
T ss_dssp CTTCGGGGCBCC-CCEEETTCBHHHHHHHHHHCCCTTCCEEEEECT----TCBEEEEEEHHHHTTS---CT---------
T ss_pred CcchHHhhccCc-eEEECCCCcHHHHHHHHHhhCccCeeEEEEEcC----CCeEEEEEEHHHHHhC---CC---------
Confidence 456899999999 99999999999999999986 6789999998 7999999999998421 00
Q ss_pred CCCCCCCccccccccccccCCCCCCCccccccCccccccccCcccccCCCCceecCCCCHHHHHHHHHHcCCCEEEEecC
Q 003889 659 DTRGGSKPISHSFSEFVKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPR 738 (788)
Q Consensus 659 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~di~~~~~~~~~~idl~~~m~~~p~tV~~~~sl~~a~~lf~~~glr~lpVVd~ 738 (788)
..+++++|++++++|++++++.+++++|++++++++||||+
T Consensus 115 ---------------------------------------~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVD~ 155 (205)
T 3kxr_A 115 ---------------------------------------HEPLISLLSEDSRALTANTTLLDAAEAIEHSREIELPVIDD 155 (205)
T ss_dssp ---------------------------------------TSBGGGGCCSSCCCEETTSCHHHHHHHHHTSSCSEEEEECT
T ss_pred ---------------------------------------cchHHHHhcCCCeEECCCCCHHHHHHHHHhcCCCEEEEEcC
Confidence 12245559999999999999999999999999999999999
Q ss_pred CCeEEEEEeHhhhhhhhcCCCccch
Q 003889 739 ASRVIGLITRKDLLIEDGEDSTTVE 763 (788)
Q Consensus 739 ~g~lvGIITr~DLl~~~~~~~~~~~ 763 (788)
+|+++|+||++|+++.+.++..+.-
T Consensus 156 ~g~lvGiIT~~Dil~~i~~e~~ed~ 180 (205)
T 3kxr_A 156 AGELIGRVTLRAATALVREHYEAQL 180 (205)
T ss_dssp TSBEEEEEEHHHHHHHHHHHHC---
T ss_pred CCeEEEEEEHHHHHHHHHHHHHHHH
Confidence 9999999999999999876554443
No 34
>2rc3_A CBS domain; in SITU proteolysis, BR, structural genomics, PSI-2, protein structure initiative; HET: NAD; 1.60A {Nitrosomonas europaea atcc 19718} SCOP: d.37.1.1
Probab=99.62 E-value=2.9e-15 Score=140.17 Aligned_cols=123 Identities=15% Similarity=0.156 Sum_probs=104.3
Q ss_pred chhhhcc---CCceEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCCcEEEEEEeHHHHHHHHhcccccCCCCCCCCCC
Q 003889 585 TAKEACG---AQKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCDTR 661 (788)
Q Consensus 585 ~v~diM~---~~~vv~l~~~~tv~~a~~~L~~~~~~~fPVVd~~~~~~~~lvGiI~r~dL~~lL~~~~~~~~~~~~~~~~ 661 (788)
+++|+|+ ++ ++++++++++.++.+.|.+++++.+||+|+ ++++|+|+++|+.+.+..+. ..
T Consensus 7 ~v~~im~~~~~~-~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~-----~~~~Givt~~dl~~~~~~~~-----~~----- 70 (135)
T 2rc3_A 7 TVKHLLQEKGHT-VVAIGPDDSVFNAMQKMAADNIGALLVMKD-----EKLVGILTERDFSRKSYLLD-----KP----- 70 (135)
T ss_dssp BHHHHHHHHCCC-CCEECTTSBHHHHHHHHHHHTCSEEEEEET-----TEEEEEEEHHHHHHHGGGSS-----SC-----
T ss_pred eHHHHHhcCCCC-cEEECCCCcHHHHHHHHHhcCCCEEEEEEC-----CEEEEEEehHHHHHHHHHcC-----CC-----
Confidence 8999999 78 999999999999999999999999999985 79999999999975332211 00
Q ss_pred CCCCccccccccccccCCCCCCCccccccCccccccccCcccccCCCCceecCCCCHHHHHHHHHHcCCCEEEEecCCCe
Q 003889 662 GGSKPISHSFSEFVKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASR 741 (788)
Q Consensus 662 ~~~~~~~~~~~~~~~~~~~~~~~i~di~~~~~~~~~~idl~~~m~~~p~tV~~~~sl~~a~~lf~~~glr~lpVVd~~g~ 741 (788)
.....++++|++++.++++++++.+++++|.+.+.+++||+| +|+
T Consensus 71 ----------------------------------~~~~~v~~~m~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd-~g~ 115 (135)
T 2rc3_A 71 ----------------------------------VKDTQVKEIMTRQVAYVDLNNTNEDCMALITEMRVRHLPVLD-DGK 115 (135)
T ss_dssp ----------------------------------GGGSBGGGTSBCSCCCBCTTCBHHHHHHHHHHHTCSEEEEEE-TTE
T ss_pred ----------------------------------cccCCHHHhccCCCeEECCCCcHHHHHHHHHHhCCCEEEEEe-CCE
Confidence 001235556999999999999999999999999999999999 699
Q ss_pred EEEEEeHhhhhhhhcCC
Q 003889 742 VIGLITRKDLLIEDGED 758 (788)
Q Consensus 742 lvGIITr~DLl~~~~~~ 758 (788)
++|+||++|++++..++
T Consensus 116 ~~Giit~~dll~~~~~~ 132 (135)
T 2rc3_A 116 VIGLLSIGDLVKDAISQ 132 (135)
T ss_dssp EEEEEEHHHHHHHHHC-
T ss_pred EEEEEEHHHHHHHHHhc
Confidence 99999999999987654
No 35
>2o16_A Acetoin utilization protein ACUB, putative; structural genomics, unknown function, PSI-2, protein struct initiative; 1.90A {Vibrio cholerae} SCOP: d.37.1.1
Probab=99.62 E-value=1.1e-15 Score=147.84 Aligned_cols=134 Identities=16% Similarity=0.236 Sum_probs=109.9
Q ss_pred cccchhhhccCCceEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCCcEEEEEEeHHHHHHHHhcccccCCCCCCCCCC
Q 003889 582 RQMTAKEACGAQKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCDTR 661 (788)
Q Consensus 582 ~~l~v~diM~~~~vv~l~~~~tv~~a~~~L~~~~~~~fPVVd~~~~~~~~lvGiI~r~dL~~lL~~~~~~~~~~~~~~~~ 661 (788)
..++++|+|+++ ++++++++++.++.+.|.+++++.+||+|+ +++++|+|+++||.+.+.... .....
T Consensus 3 ~~~~v~dim~~~-~~~v~~~~tl~~a~~~m~~~~~~~~pVvd~----~~~lvGivt~~dl~~~~~~~~--~~~~~----- 70 (160)
T 2o16_A 3 LMIKVEDMMTRH-PHTLLRTHTLNDAKHLMEALDIRHVPIVDA----NKKLLGIVSQRDLLAAQESSL--QRSAQ----- 70 (160)
T ss_dssp CCCBGGGTSEES-CCCBCTTSBHHHHHHHHHHHTCSEEEEECT----TCBEEEEEEHHHHHHHHHHHC--C---------
T ss_pred CcCcHHHHhcCC-CeEECCCCcHHHHHHHHHHcCCCEEEEEcC----CCcEEEEEeHHHHHHHHHHhh--ccccc-----
Confidence 357899999998 999999999999999999999999999997 789999999999988765421 00000
Q ss_pred CCCCccccccccccccCCCCCCCccccccCccccccccCcccccCCCCceecCCCCHHHHHHHHHHcCCCEEEEecCCCe
Q 003889 662 GGSKPISHSFSEFVKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASR 741 (788)
Q Consensus 662 ~~~~~~~~~~~~~~~~~~~~~~~i~di~~~~~~~~~~idl~~~m~~~p~tV~~~~sl~~a~~lf~~~glr~lpVVd~~g~ 741 (788)
..+.....+++++|++++.+|++++++.+++++|.+.+.+++||+|+ |+
T Consensus 71 ------------------------------~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-g~ 119 (160)
T 2o16_A 71 ------------------------------GDSLAFETPLFEVMHTDVTSVAPQAGLKESAIYMQKHKIGCLPVVAK-DV 119 (160)
T ss_dssp -----------------------------------CCCBHHHHSCSCEEEBCTTSBHHHHHHHHHHTTCSCEEEEET-TE
T ss_pred ------------------------------ccchhcccCHHHHhcCCCeEECCCCCHHHHHHHHHHhCCCEEEEEEC-CE
Confidence 00000123456669999999999999999999999999999999998 99
Q ss_pred EEEEEeHhhhhhhhcCC
Q 003889 742 VIGLITRKDLLIEDGED 758 (788)
Q Consensus 742 lvGIITr~DLl~~~~~~ 758 (788)
++|+||++|+++++.+.
T Consensus 120 lvGiit~~dil~~~~~~ 136 (160)
T 2o16_A 120 LVGIITDSDFVTIAINL 136 (160)
T ss_dssp EEEEECHHHHHHHHHHH
T ss_pred EEEEEEHHHHHHHHHHH
Confidence 99999999999986653
No 36
>2emq_A Hypothetical conserved protein; CBS domains, NPPSFA, national project on protein structural functional analyses; 2.50A {Geobacillus kaustophilus}
Probab=99.61 E-value=1.8e-15 Score=145.48 Aligned_cols=135 Identities=16% Similarity=0.168 Sum_probs=109.4
Q ss_pred hhcccchhhhccC--CceEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCCcEEEEEEeHHHHHHHHhcccccCCCCCC
Q 003889 580 KMRQMTAKEACGA--QKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLP 657 (788)
Q Consensus 580 ~l~~l~v~diM~~--~~vv~l~~~~tv~~a~~~L~~~~~~~fPVVd~~~~~~~~lvGiI~r~dL~~lL~~~~~~~~~~~~ 657 (788)
.+..++++|+|.+ + ++++++++++.++.+.|.+++++.+||+|+ +++++|+|+.+|+.+.+.....+.
T Consensus 7 ~l~~~~v~~im~~~~~-~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~----~~~~~Givt~~dl~~~~~~~~~~~----- 76 (157)
T 2emq_A 7 EFMQMTVKPFLIPADK-VAHVQPGNYLDHALLVLTKTGYSAIPVLDT----SYKLHGLISMTMMMDAILGLERIE----- 76 (157)
T ss_dssp ---CCBSTTTCEEGGG-SCCBCTTSBHHHHHHHHHHSSSSEEEEECT----TCCEEEEEEHHHHHHHSBCSSSBC-----
T ss_pred hHhhCcHHhhccCCcc-ceEECCCCcHHHHHHHHHHCCceEEEEEcC----CCCEEEEeeHHHHHHHHhcccccc-----
Confidence 3567899999996 7 899999999999999999999999999997 689999999999987643311000
Q ss_pred CCCCCCCCccccccccccccCCCCCCCccccccCccccccccCcccccCCCCceecCCCCHHHHHHHHHHcCCCEEEEec
Q 003889 658 CDTRGGSKPISHSFSEFVKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVP 737 (788)
Q Consensus 658 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~di~~~~~~~~~~idl~~~m~~~p~tV~~~~sl~~a~~lf~~~glr~lpVVd 737 (788)
. +.....+++++|++++.++++++++.+++++|.+.+. +||+|
T Consensus 77 ---------------------------~--------~~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~--l~Vvd 119 (157)
T 2emq_A 77 ---------------------------F--------ERLETMKVEEVMNRNIPRLRLDDSLMKAVGLIVNHPF--VCVEN 119 (157)
T ss_dssp ---------------------------G--------GGGGTCBGGGTCBCCCCEEETTSBHHHHHHHHHHSSE--EEEEC
T ss_pred ---------------------------h--------HHhcCCcHHHHhCCCCceecCCCcHHHHHHHHhhCCE--EEEEc
Confidence 0 0001234566699999999999999999999999987 99999
Q ss_pred CCCeEEEEEeHhhhhhhhcCCCcc
Q 003889 738 RASRVIGLITRKDLLIEDGEDSTT 761 (788)
Q Consensus 738 ~~g~lvGIITr~DLl~~~~~~~~~ 761 (788)
++|+++|+||++|+++++.+...+
T Consensus 120 ~~g~~~Giit~~dil~~~~~~~~~ 143 (157)
T 2emq_A 120 DDGYFAGIFTRREVLKQLNKQLHR 143 (157)
T ss_dssp SSSSEEEEEEHHHHHHHHHHTTCC
T ss_pred CCCeEEEEEEHHHHHHHHHHHhhc
Confidence 889999999999999988765543
No 37
>3ctu_A CBS domain protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.81A {Streptococcus pneumoniae TIGR4} PDB: 3k6e_A
Probab=99.61 E-value=2e-15 Score=145.05 Aligned_cols=132 Identities=14% Similarity=0.151 Sum_probs=108.6
Q ss_pred hcccchhhhcc--CCceEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCCcEEEEEEeHHHHHHHHhcccccCCCCCCC
Q 003889 581 MRQMTAKEACG--AQKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPC 658 (788)
Q Consensus 581 l~~l~v~diM~--~~~vv~l~~~~tv~~a~~~L~~~~~~~fPVVd~~~~~~~~lvGiI~r~dL~~lL~~~~~~~~~~~~~ 658 (788)
+...+++|+|+ ++ ++++++++++.++.+.|.+++++.+||+|+ +++++|+|+.+|+.+.+.... +...
T Consensus 12 l~~~~v~dim~p~~~-~~~v~~~~~l~~a~~~m~~~~~~~~~Vvd~----~~~~~Giit~~dl~~~~~~~~-~~~~---- 81 (156)
T 3ctu_A 12 FLLGQEETFLTPAKN-LAVLIDTHNADHATLLLSQMTYTRVPVVTD----EKQFVGTIGLRDIMAYQMEHD-LSQE---- 81 (156)
T ss_dssp HHHTTGGGGEEEGGG-CCCEETTSBHHHHHHHHTTCSSSEEEEECC-----CBEEEEEEHHHHHHHHHHHT-CCHH----
T ss_pred HHHHHHHHHcCcccC-ceEECCCCCHHHHHHHHHHCCCceEeEECC----CCEEEEEEcHHHHHHHHHhcc-cccc----
Confidence 44568999999 56 899999999999999999999999999998 789999999999988765432 0000
Q ss_pred CCCCCCCccccccccccccCCCCCCCccccccCccccccccCcccccCCCCceecCCCCHHHHHHHHHHcCCCEEEEecC
Q 003889 659 DTRGGSKPISHSFSEFVKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPR 738 (788)
Q Consensus 659 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~di~~~~~~~~~~idl~~~m~~~p~tV~~~~sl~~a~~lf~~~glr~lpVVd~ 738 (788)
.....+++++|++++.++++++++.+++++|.+.+ ++||+|+
T Consensus 82 ------------------------------------~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~~~~~~--~lpVvd~ 123 (156)
T 3ctu_A 82 ------------------------------------IMADTDIVHMTKTDVAVVSPDFTITEVLHKLVDES--FLPVVDA 123 (156)
T ss_dssp ------------------------------------HHTTSBGGGGCBCSCCCBCSSCCHHHHHHHTTTSS--EEEEECT
T ss_pred ------------------------------------ccccCcHHHhccCCceeeCCCCcHHHHHHHHHHcC--eEEEEcC
Confidence 00012345569999999999999999999999886 7999998
Q ss_pred CCeEEEEEeHhhhhhhhcCCCc
Q 003889 739 ASRVIGLITRKDLLIEDGEDST 760 (788)
Q Consensus 739 ~g~lvGIITr~DLl~~~~~~~~ 760 (788)
+|+++|+||++|+++++.+...
T Consensus 124 ~g~~~Giit~~dil~~l~~~~~ 145 (156)
T 3ctu_A 124 EGIFQGIITRKSILKAVNALLH 145 (156)
T ss_dssp TSBEEEEEETTHHHHHHHHHSC
T ss_pred CCeEEEEEEHHHHHHHHHHHHH
Confidence 8999999999999998876543
No 38
>1pvm_A Conserved hypothetical protein TA0289; structural genomics, CBS domain, PSI, protein structure initiative; 1.50A {Thermoplasma acidophilum dsm 1728} SCOP: d.37.1.1 g.41.13.1 PDB: 2qh1_A
Probab=99.60 E-value=4.9e-15 Score=146.79 Aligned_cols=126 Identities=19% Similarity=0.212 Sum_probs=108.9
Q ss_pred ccchhhhccCCceEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCCcEEEEEEeHHHHHHHHhcccccCCCCCCCCCCC
Q 003889 583 QMTAKEACGAQKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCDTRG 662 (788)
Q Consensus 583 ~l~v~diM~~~~vv~l~~~~tv~~a~~~L~~~~~~~fPVVd~~~~~~~~lvGiI~r~dL~~lL~~~~~~~~~~~~~~~~~ 662 (788)
.++++|+|+++ ++++++++++.++.+.|.+++++.+||+|+ +++++|+|+.+|++..+..+. .
T Consensus 8 ~~~v~~im~~~-~~~v~~~~~l~ea~~~~~~~~~~~~pVvd~----~g~~vGivt~~dl~~~~~~~~-----~------- 70 (184)
T 1pvm_A 8 FMRVEKIMNSN-FKTVNWNTTVFDAVKIMNENHLYGLVVKDD----NGNDVGLLSERSIIKRFIPRN-----K------- 70 (184)
T ss_dssp CCBGGGTSBTT-CCEEETTCBHHHHHHHHHHHTCCEEEEECT----TSCEEEEEEHHHHHHHTGGGC-----C-------
T ss_pred ccCHHHhcCCC-CeEECCCCcHHHHHHHHHHcCCCEEEEEcC----CCcEEEEEeHHHHHHHHhhcc-----c-------
Confidence 47999999998 999999999999999999999999999997 689999999999987643211 0
Q ss_pred CCCccccccccccccCCCCCCCccccccCccccccccCcccccCCCCceecCCCCHHHHHHHHHHcCCCEEEEecCCCeE
Q 003889 663 GSKPISHSFSEFVKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRV 742 (788)
Q Consensus 663 ~~~~~~~~~~~~~~~~~~~~~~i~di~~~~~~~~~~idl~~~m~~~p~tV~~~~sl~~a~~lf~~~glr~lpVVd~~g~l 742 (788)
.....+++++|++++.++++++++.+++++|.+.+.+++||+|++|++
T Consensus 71 --------------------------------~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~~ 118 (184)
T 1pvm_A 71 --------------------------------KPDEVPIRLVMRKPIPKVKSDYDVKDVAAYLSENGLERCAVVDDPGRV 118 (184)
T ss_dssp --------------------------------CGGGSBGGGTSBSSCCEEETTCBHHHHHHHHHHHTCSEEEEECTTCCE
T ss_pred --------------------------------CcccCCHHHHhCCCCcEECCCCCHHHHHHHHHHcCCcEEEEEcCCCeE
Confidence 001123556699999999999999999999999999999999998999
Q ss_pred EEEEeHhhhhhhhcC
Q 003889 743 IGLITRKDLLIEDGE 757 (788)
Q Consensus 743 vGIITr~DLl~~~~~ 757 (788)
+|+||++|+++++.+
T Consensus 119 ~Givt~~dll~~~~~ 133 (184)
T 1pvm_A 119 VGIVTLTDLSRYLSR 133 (184)
T ss_dssp EEEEEHHHHTTTSCH
T ss_pred EEEEEHHHHHHHHHh
Confidence 999999999987765
No 39
>2uv4_A 5'-AMP-activated protein kinase subunit gamma-1; transferase, CBS domain, lipid synthesis, fatty acid biosynthesis; HET: AMP; 1.33A {Homo sapiens} PDB: 2uv5_A* 2uv6_A* 2uv7_A*
Probab=99.60 E-value=3.5e-15 Score=142.90 Aligned_cols=134 Identities=13% Similarity=0.198 Sum_probs=106.4
Q ss_pred hhhcccchhhhccCCceEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCCcEEEEEEeHHHHHHHHhcccccCCCCCCC
Q 003889 579 YKMRQMTAKEACGAQKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPC 658 (788)
Q Consensus 579 ~~l~~l~v~diM~~~~vv~l~~~~tv~~a~~~L~~~~~~~fPVVd~~~~~~~~lvGiI~r~dL~~lL~~~~~~~~~~~~~ 658 (788)
..++.++++|+ ++ ++++++++++.++.+.|.+++++.+||+|+ +++++|+|+.+|+.+.+.... +..
T Consensus 18 ~~l~~~~v~~~--~~-~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~----~~~~vGivt~~dl~~~~~~~~-~~~----- 84 (152)
T 2uv4_A 18 KSLEELQIGTY--AN-IAMVRTTTPVYVALGIFVQHRVSALPVVDE----KGRVVDIYSKFDVINLAAEKT-YNN----- 84 (152)
T ss_dssp SBHHHHTCSBC--SS-CCCEETTCBHHHHHHHHHHHCCSEEEEECT----TSBEEEEEEHHHHHHHHHCSS-CCC-----
T ss_pred hhHHHccCCcc--CC-ceEeCCCCcHHHHHHHHHHcCCceEeEECC----CCcEEEEEeHHHHHHHhcchh-hhh-----
Confidence 45678889998 66 889999999999999999999999999998 789999999999988665432 000
Q ss_pred CCCCCCCccccccccccccCCCCCCCccccccCccccccccCcccccCCCCceecCCCCHHHHHHHHHHcCCCEEEEecC
Q 003889 659 DTRGGSKPISHSFSEFVKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPR 738 (788)
Q Consensus 659 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~di~~~~~~~~~~idl~~~m~~~p~tV~~~~sl~~a~~lf~~~glr~lpVVd~ 738 (788)
...++.++ ++.++.|.+++.++++++++.+++++|.+.+.+++||+|+
T Consensus 85 ----------------------~~~~v~~~----------m~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~ 132 (152)
T 2uv4_A 85 ----------------------LDVSVTKA----------LQHRSHYFEGVLKCYLHETLETIINRLVEAEVHRLVVVDE 132 (152)
T ss_dssp ----------------------TTSBGGGG----------GGTCCHHHHTCSEECTTSBHHHHHHHHHHHTCSEEEEECT
T ss_pred ----------------------hcchHHHH----------HhhhhcccCCCeEECCCCcHHHHHHHHHHcCCeEEEEECC
Confidence 00122222 1111122378899999999999999999999999999998
Q ss_pred CCeEEEEEeHhhhhhhhcC
Q 003889 739 ASRVIGLITRKDLLIEDGE 757 (788)
Q Consensus 739 ~g~lvGIITr~DLl~~~~~ 757 (788)
+|+++|+||++|+++++.+
T Consensus 133 ~g~~vGiit~~dil~~l~~ 151 (152)
T 2uv4_A 133 NDVVKGIVSLSDILQALVL 151 (152)
T ss_dssp TSBEEEEEEHHHHHHHHC-
T ss_pred CCeEEEEEEHHHHHHHHHh
Confidence 8999999999999988653
No 40
>4fry_A Putative signal-transduction protein with CBS DOM; CBS domain,ssgcid, structural genomics, niaid; HET: NAD AMP; 2.10A {Burkholderia ambifaria}
Probab=99.59 E-value=5.1e-15 Score=142.40 Aligned_cols=127 Identities=17% Similarity=0.183 Sum_probs=107.0
Q ss_pred cchhhhcc------CCceEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCCcEEEEEEeHHHHHHHHhcccccCCCCCC
Q 003889 584 MTAKEACG------AQKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLP 657 (788)
Q Consensus 584 l~v~diM~------~~~vv~l~~~~tv~~a~~~L~~~~~~~fPVVd~~~~~~~~lvGiI~r~dL~~lL~~~~~~~~~~~~ 657 (788)
.+++|+|+ ++ ++++++++++.++++.|.+++++.+||+| +++++|+|+.+|+.+.+..+. ..
T Consensus 7 ~~v~dim~~~~~~~~~-~~~v~~~~~~~~a~~~~~~~~~~~~~V~~-----~~~~~Givt~~dl~~~~~~~~-~~----- 74 (157)
T 4fry_A 7 TTVAQILKAKPDSGRT-IYTVTKNDFVYDAIKLMAEKGIGALLVVD-----GDDIAGIVTERDYARKVVLQE-RS----- 74 (157)
T ss_dssp CBHHHHHHHSTTTTCC-CCEEETTSBHHHHHHHHHHHTCSEEEEES-----SSSEEEEEEHHHHHHHSGGGT-CC-----
T ss_pred HHHHHHHhcccccCCC-CeEECCCCcHHHHHHHHHHcCCCEEEEee-----CCEEEEEEEHHHHHHHHHhcc-CC-----
Confidence 57999998 55 69999999999999999999999999954 489999999999987654322 00
Q ss_pred CCCCCCCCccccccccccccCCCCCCCccccccCccccccccCcccccCCCCceecCCCCHHHHHHHHHHcCCCEEEEec
Q 003889 658 CDTRGGSKPISHSFSEFVKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVP 737 (788)
Q Consensus 658 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~di~~~~~~~~~~idl~~~m~~~p~tV~~~~sl~~a~~lf~~~glr~lpVVd 737 (788)
. ....++++|++++.++++++++.+++++|.+.+.+++||+|
T Consensus 75 ----------------------~----------------~~~~v~~~m~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd 116 (157)
T 4fry_A 75 ----------------------S----------------KATRVEEIMTAKVRYVEPSQSTDECMALMTEHRMRHLPVLD 116 (157)
T ss_dssp ----------------------S----------------SSCBHHHHSBSSCCCBCTTSBHHHHHHHHHHHTCSEEEEEE
T ss_pred ----------------------c----------------cccCHHHHcCCCCcEECCCCcHHHHHHHHHHcCCCEEEEEE
Confidence 0 01234555999999999999999999999999999999999
Q ss_pred CCCeEEEEEeHhhhhhhhcCCCcc
Q 003889 738 RASRVIGLITRKDLLIEDGEDSTT 761 (788)
Q Consensus 738 ~~g~lvGIITr~DLl~~~~~~~~~ 761 (788)
+|+++|+||++|+++++.++..+
T Consensus 117 -~g~~~Giit~~dil~~l~~~~~~ 139 (157)
T 4fry_A 117 -GGKLIGLISIGDLVKSVIADQQF 139 (157)
T ss_dssp -TTEEEEEEEHHHHHHHHHTTCCC
T ss_pred -CCEEEEEEEHHHHHHHHHHHHHh
Confidence 59999999999999998876544
No 41
>2nyc_A Nuclear protein SNF4; bateman2 domain, AMP kinase, protein binding; 1.90A {Saccharomyces cerevisiae} SCOP: d.37.1.1 PDB: 2nye_A
Probab=99.59 E-value=4.4e-15 Score=140.13 Aligned_cols=128 Identities=20% Similarity=0.323 Sum_probs=104.8
Q ss_pred hcccchhh---hccCCceEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCCcEEEEEEeHHHHHHHHhcccccCCCCCC
Q 003889 581 MRQMTAKE---ACGAQKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLP 657 (788)
Q Consensus 581 l~~l~v~d---iM~~~~vv~l~~~~tv~~a~~~L~~~~~~~fPVVd~~~~~~~~lvGiI~r~dL~~lL~~~~~~~~~~~~ 657 (788)
+.+.+++| +|.++ ++++++++++.++++.|.+++++.+||+|+ +++++|+|+++|+.+.+.+.. +..
T Consensus 5 ~~~~~v~~~~~~~~~~-~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~----~~~~~Givt~~dl~~~~~~~~-~~~---- 74 (144)
T 2nyc_A 5 FLKIPIGDLNIITQDN-MKSCQMTTPVIDVIQMLTQGRVSSVPIIDE----NGYLINVYEAYDVLGLIKGGI-YND---- 74 (144)
T ss_dssp GGGSBGGGSSCCBCSS-CCCBCTTSBHHHHHHHHHHHTCSEEEEECT----TCBEEEEEEHHHHHHHHHTC---------
T ss_pred hhhcchhhcCCCCCCC-ceEECCCCcHHHHHHHHHHcCcceeeEEcC----CCcEEEEEcHHHHHHHhcccc-ccc----
Confidence 34567888 78888 999999999999999999999999999997 689999999999988654321 000
Q ss_pred CCCCCCCCccccccccccccCCCCCCCccccccCccccccccCcccccCC------CCceecCCCCHHHHHHHHHHcCCC
Q 003889 658 CDTRGGSKPISHSFSEFVKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNP------SPYVVPEDMSLSKVYNLFRQLGLR 731 (788)
Q Consensus 658 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~di~~~~~~~~~~idl~~~m~~------~p~tV~~~~sl~~a~~lf~~~glr 731 (788)
. ..+++++|++ ++.++++++++.+++++|.+.+.+
T Consensus 75 -----------------------~----------------~~~v~~~m~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~ 115 (144)
T 2nyc_A 75 -----------------------L----------------SLSVGEALMRRSDDFEGVYTCTKNDKLSTIMDNIRKARVH 115 (144)
T ss_dssp -----------------------C----------------CSBHHHHHHHCC------CEECTTSBHHHHHHHHHHHTCS
T ss_pred -----------------------C----------------CccHHHHHhcCccccCCCeEECCCCcHHHHHHHHHHCCCC
Confidence 0 1123444654 678999999999999999999999
Q ss_pred EEEEecCCCeEEEEEeHhhhhhhhcC
Q 003889 732 HIFVVPRASRVIGLITRKDLLIEDGE 757 (788)
Q Consensus 732 ~lpVVd~~g~lvGIITr~DLl~~~~~ 757 (788)
++||+|++|+++|+||++|+++++.+
T Consensus 116 ~l~Vvd~~g~~~Giit~~dil~~l~~ 141 (144)
T 2nyc_A 116 RFFVVDDVGRLVGVLTLSDILKYILL 141 (144)
T ss_dssp EEEEECTTSBEEEEEEHHHHHHHHHH
T ss_pred EEEEECCCCCEEEEEEHHHHHHHHHh
Confidence 99999988999999999999998754
No 42
>1yav_A Hypothetical protein BSU14130; cystathionine beta synthase (CBS) domain, structural genomics, protein structure initiative, PSI; 2.10A {Bacillus subtilis} SCOP: d.37.1.1
Probab=99.59 E-value=1.5e-15 Score=146.64 Aligned_cols=133 Identities=13% Similarity=0.119 Sum_probs=109.6
Q ss_pred hcccchhhhccC--CceEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCCcEEEEEEeHHHHHHHHhcccccCCCCCCC
Q 003889 581 MRQMTAKEACGA--QKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPC 658 (788)
Q Consensus 581 l~~l~v~diM~~--~~vv~l~~~~tv~~a~~~L~~~~~~~fPVVd~~~~~~~~lvGiI~r~dL~~lL~~~~~~~~~~~~~ 658 (788)
+..++++|+|++ + ++++++++++.++.+.|.+++++.+||+|+ +++++|+|+++|+...+.....+..
T Consensus 11 l~~~~v~~im~~~~~-~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~----~~~lvGivt~~dl~~~~~~~~~~~~----- 80 (159)
T 1yav_A 11 LLEATVGQFMIEADK-VAHVQVGNNLEHALLVLTKTGYTAIPVLDP----SYRLHGLIGTNMIMNSIFGLERIEF----- 80 (159)
T ss_dssp CTTCBHHHHSEEGGG-SCCEETTCBHHHHHHHHHHHCCSEEEEECT----TCBEEEEEEHHHHHHHHBCSSSBCG-----
T ss_pred HhHhhHHHHhCCccc-eEEECCCCcHHHHHHHHHhCCCcEEEEECC----CCCEEEEeEHHHHHHHhhhhcccch-----
Confidence 456899999998 7 899999999999999999999999999998 7899999999999876543210000
Q ss_pred CCCCCCCccccccccccccCCCCCCCccccccCccccccccCcccccCCCCceecCCCCHHHHHHHHHHcCCCEEEEecC
Q 003889 659 DTRGGSKPISHSFSEFVKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPR 738 (788)
Q Consensus 659 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~di~~~~~~~~~~idl~~~m~~~p~tV~~~~sl~~a~~lf~~~glr~lpVVd~ 738 (788)
. .....+++++|++++.+|.+++++.+++++|.+.+. +||+|+
T Consensus 81 ---------------------------~--------~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~--lpVvd~ 123 (159)
T 1yav_A 81 ---------------------------E--------KLDQITVEEVMLTDIPRLHINDPIMKGFGMVINNGF--VCVEND 123 (159)
T ss_dssp ---------------------------G--------GTTTSBHHHHSBCSCCEEETTSBHHHHHHHTTTCSE--EEEECT
T ss_pred ---------------------------h--------hhccCCHHHhcCCCCceEcCCCCHHHHHHHHHhCCE--EEEEeC
Confidence 0 001234566699999999999999999999999876 999998
Q ss_pred CCeEEEEEeHhhhhhhhcCCCc
Q 003889 739 ASRVIGLITRKDLLIEDGEDST 760 (788)
Q Consensus 739 ~g~lvGIITr~DLl~~~~~~~~ 760 (788)
+|+++|+||++|+++++.++..
T Consensus 124 ~g~~vGiit~~dil~~~~~~~~ 145 (159)
T 1yav_A 124 EQVFEGIFTRRVVLKELNKHIR 145 (159)
T ss_dssp TCBEEEEEEHHHHHHHHHHHC-
T ss_pred CCeEEEEEEHHHHHHHHHHHHH
Confidence 8999999999999998775443
No 43
>2j9l_A Chloride channel protein 5; ION channel, ION transport, voltage-gated; HET: ATP; 2.30A {Homo sapiens} SCOP: d.37.1.1 PDB: 2ja3_A*
Probab=99.59 E-value=4.1e-15 Score=146.84 Aligned_cols=155 Identities=24% Similarity=0.424 Sum_probs=112.6
Q ss_pred hhhcccchhhhccCCc---eEEe--cCcccHHHHHHHHhhCCCCeeEEe--eCCCCCCcEEEEEEeHHHHHHHHhccccc
Q 003889 579 YKMRQMTAKEACGAQK---VVSL--PRIIKVADVVSILRTNKHNGFPVI--DHSRNGERLVIGLVLRSHLLVLLQSKVDF 651 (788)
Q Consensus 579 ~~l~~l~v~diM~~~~---vv~l--~~~~tv~~a~~~L~~~~~~~fPVV--d~~~~~~~~lvGiI~r~dL~~lL~~~~~~ 651 (788)
..++..+|+|+|+++. ++++ ++++++.++.+.|.+++++.+||+ |+ +++++|+|+++|+.+.+......
T Consensus 6 ~~~~~~~v~dim~~~~~~~~~~v~~~~~~~~~~a~~~~~~~~~~~~pVv~~d~----~~~lvGiit~~dl~~~~~~~~~~ 81 (185)
T 2j9l_A 6 EFAHKTLAMDVMKPRRNDPLLTVLTQDSMTVEDVETIISETTYSGFPVVVSRE----SQRLVGFVLRRDLIISIENARKK 81 (185)
T ss_dssp ---CCCBHHHHSBSCTTSCCCCCEESSCEEHHHHHHHHHHCCCSEEEEESCTT----TCBEEEEEEHHHHHHHHHHHHTS
T ss_pred hhhccCcHHHHhcccccCceEEEecCCCccHHHHHHHHHhcCCCceeEEEECC----CCeEEEEEEHHHHHHHHHhhccc
Confidence 4467899999998741 5778 999999999999999999999999 55 78999999999998876543200
Q ss_pred CCCCCCCCCCCCCCccccccccccccCCCCCCCccccccCccccccccCcccccCCCCceecCCCCHHHHHHHHHHcCCC
Q 003889 652 QHSPLPCDTRGGSKPISHSFSEFVKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLR 731 (788)
Q Consensus 652 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~di~~~~~~~~~~idl~~~m~~~p~tV~~~~sl~~a~~lf~~~glr 731 (788)
.... .+ .....+.+... +. ........+++++|++++.+|++++++.+++++|.+.+.+
T Consensus 82 ~~~~--~~---------~~~~~~~~~~~-------~~---~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~ 140 (185)
T 2j9l_A 82 QDGV--VS---------TSIIYFTEHSP-------PL---PPYTPPTLKLRNILDLSPFTVTDLTPMEIVVDIFRKLGLR 140 (185)
T ss_dssp CSCC--CT---------TCEEECSSSCC-------CC---CTTCCCCEECGGGEESSCCEEETTSBHHHHHHHHHHHTCS
T ss_pred CCCc--cc---------cceeecccCCc-------cc---ccccccCccHHHhhCcCCeEeCCCCCHHHHHHHHHhCCCc
Confidence 0000 00 00000000000 00 0001123567778999999999999999999999999999
Q ss_pred EEEEecCCCeEEEEEeHhhhhhhhcCCC
Q 003889 732 HIFVVPRASRVIGLITRKDLLIEDGEDS 759 (788)
Q Consensus 732 ~lpVVd~~g~lvGIITr~DLl~~~~~~~ 759 (788)
++||+| +|+++|+||++|+++++.+..
T Consensus 141 ~l~Vvd-~g~~vGiit~~dll~~l~~~~ 167 (185)
T 2j9l_A 141 QCLVTH-NGRLLGIITKKDVLKHIAQMA 167 (185)
T ss_dssp EEEEEE-TTEEEEEEEHHHHHHHHHHHC
T ss_pred EEEEEE-CCEEEEEEEHHHHHHHHHHhh
Confidence 999999 699999999999999877544
No 44
>2pfi_A Chloride channel protein CLC-Ka; cystathionine beta synthetase (CBS) domains containing protein, transport protein; 1.60A {Homo sapiens}
Probab=99.58 E-value=5.1e-15 Score=143.08 Aligned_cols=132 Identities=17% Similarity=0.369 Sum_probs=105.5
Q ss_pred hcccchhhhccCCceEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCCcEEEEEEeHHHHHHHHhcccccCCCCCCCCC
Q 003889 581 MRQMTAKEACGAQKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCDT 660 (788)
Q Consensus 581 l~~l~v~diM~~~~vv~l~~~~tv~~a~~~L~~~~~~~fPVVd~~~~~~~~lvGiI~r~dL~~lL~~~~~~~~~~~~~~~ 660 (788)
...++++|+|+++ ++++++++++.++.+.|.+++++.+||+|+. ++++++|+|+++|+...+.... .....
T Consensus 10 ~~~~~v~dim~~~-~~~v~~~~~~~~a~~~~~~~~~~~~pVvd~~--~~~~~~Givt~~dl~~~~~~~~-~~~~~----- 80 (164)
T 2pfi_A 10 SHHVRVEHFMNHS-ITTLAKDTPLEEVVKVVTSTDVTEYPLVEST--ESQILVGIVQRAQLVQALQAEP-PSRAP----- 80 (164)
T ss_dssp CCSCBHHHHCBCC-CCCEETTCBHHHHHHHHHTCCCSEEEEESCT--TTCBEEEEEEHHHHHHHHHC-------------
T ss_pred ccCCCHHHHcCCC-CeEECCCCcHHHHHHHHHhCCCCceeEEecC--CCCEEEEEEEHHHHHHHHHhhc-cccCC-----
Confidence 3468999999998 9999999999999999999999999999841 1589999999999988764422 00000
Q ss_pred CCCCCccccccccccccCCCCCCCccccccCccccccccCcccccCCC------CceecCCCCHHHHHHHHHHcCCCEEE
Q 003889 661 RGGSKPISHSFSEFVKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPS------PYVVPEDMSLSKVYNLFRQLGLRHIF 734 (788)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~~~~~~i~di~~~~~~~~~~idl~~~m~~~------p~tV~~~~sl~~a~~lf~~~glr~lp 734 (788)
.. ...++++|+++ +.++++++++.+++++|.+.+.+++|
T Consensus 81 -------------------~~----------------~~~v~~~m~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~lp 125 (164)
T 2pfi_A 81 -------------------GH----------------QQCLQDILARGCPTEPVTLTLFSETTLHQAQNLFKLLNLQSLF 125 (164)
T ss_dssp -------------------CC----------------CCBHHHHHHTTCCCBCCCCCEETTCBHHHHHHHHHHTTCSEEE
T ss_pred -------------------cc----------------cchhhhhhcccccccCCceEECCCCcHHHHHHHHHHhCCCEEE
Confidence 00 01123335544 78999999999999999999999999
Q ss_pred EecCCCeEEEEEeHhhhhhhhcC
Q 003889 735 VVPRASRVIGLITRKDLLIEDGE 757 (788)
Q Consensus 735 VVd~~g~lvGIITr~DLl~~~~~ 757 (788)
|+| +|+++|+||++|+++++.+
T Consensus 126 Vvd-~g~l~Giit~~dil~~~~~ 147 (164)
T 2pfi_A 126 VTS-RGRAVGCVSWVEMKKAISN 147 (164)
T ss_dssp EEE-TTEEEEEEEHHHHHHHHHH
T ss_pred EEE-CCEEEEEEEHHHHHHHHHh
Confidence 999 5999999999999998764
No 45
>3l2b_A Probable manganase-dependent inorganic pyrophosphatase; family II, CBS domain, bateman domain, AP4A, diadenosine polyphosphate, DRTGG; HET: B4P; 2.27A {Clostridium perfringens} PDB: 3l31_A*
Probab=99.54 E-value=1.7e-14 Score=149.60 Aligned_cols=168 Identities=12% Similarity=0.149 Sum_probs=108.1
Q ss_pred ccchhhhccCCceEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCCcEEEEEEeHHHHHHHHhcccccCC----CCCC-
Q 003889 583 QMTAKEACGAQKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQH----SPLP- 657 (788)
Q Consensus 583 ~l~v~diM~~~~vv~l~~~~tv~~a~~~L~~~~~~~fPVVd~~~~~~~~lvGiI~r~dL~~lL~~~~~~~~----~~~~- 657 (788)
..+++|+|+++ ++++++++++.++++.|.+++++.+||+|+ +++++|+|+..|+.+.+.... -.. ....
T Consensus 6 ~~~v~~im~~~-~~~v~~~~~~~~a~~~m~~~~~~~lpVvd~----~~~l~Giit~~di~~~~~~~~-~~~~~~~~~~~~ 79 (245)
T 3l2b_A 6 KLKVEDLEMDK-IAPLAPEVSLKMAWNIMRDKNLKSIPVADG----NNHLLGMLSTSNITATYMDIW-DSNILAKSATSL 79 (245)
T ss_dssp CCBGGGSCCBC-CCCBCTTCBHHHHHHHHHHTTCSEEEEECT----TCBEEEEEEHHHHHHHHHCCC-CTTHHHHTTCCH
T ss_pred cCcHHHhcCCC-CcEECCCCcHHHHHHHHHHcCCCEEEEEcC----CCEEEEEEEHHHHHHHHHHhh-hhhhhhhccCCH
Confidence 46899999998 999999999999999999999999999998 789999999999998765422 000 0000
Q ss_pred -----------CCCCCCCCcccccc-------ccccccCCCCCC----------------CccccccC------------
Q 003889 658 -----------CDTRGGSKPISHSF-------SEFVKPASSKGL----------------SIDDIHLS------------ 691 (788)
Q Consensus 658 -----------~~~~~~~~~~~~~~-------~~~~~~~~~~~~----------------~i~di~~~------------ 691 (788)
............++ ..+.+...+... .+.-+.++
T Consensus 80 ~~v~~~l~~~~l~~~~~~~~~~g~~~i~a~~~~~~~~~~~~~~ivIvgdr~~~~~~~i~~~~~~liit~~~~~~~~v~~~ 159 (245)
T 3l2b_A 80 DNILDTLSAEAQNINEERKVFPGKVVVAAMQAESLKEFISEGDIAIAGDRAEIQAELIELKVSLLIVTGGHTPSKEIIEL 159 (245)
T ss_dssp HHHHHHTTCEEEECCTTCCCCCSCEEECCSCGGGGGGTCCTTCEEEECSCHHHHHHHHHTTCSEEEECTTCCCCHHHHHH
T ss_pred HHHHHHhCCEEEeccCCcceeeeeEEEEeCChHHHHhcCCCCCEEEECCCHHHHHHHHHcCCCEEEECCCCCCCHHHHHH
Confidence 00000000000000 000000000000 00000000
Q ss_pred -----------c-------cccccccCcccccC-CCCceecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHhhhh
Q 003889 692 -----------S-------DDMEMYIDLGPFLN-PSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLL 752 (788)
Q Consensus 692 -----------~-------~~~~~~idl~~~m~-~~p~tV~~~~sl~~a~~lf~~~glr~lpVVd~~g~lvGIITr~DLl 752 (788)
+ .......+++++|+ +++.++++++++.+++++|.+.+++++||+|++|+++|+||++|++
T Consensus 160 a~~~~~~~i~t~~d~~~~~~~~~~~~~v~~im~~~~~~~~~~~~~~~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dll 239 (245)
T 3l2b_A 160 AKKNNITVITTPHDSFTASRLIVQSLPVDYVMTKDNLVAVSTDDLVEDVKVTMSETRYSNYPVIDENNKVVGSIARFHLI 239 (245)
T ss_dssp HHHHTCEEEECSSCHHHHHHHGGGGSBHHHHSBCTTCCCEETTSBHHHHHHHHHHHCCSEEEEECTTCBEEEEEECC---
T ss_pred HHHcCCeEEEeCCChHHHHHHHhcCCceeeEecCCccEEECCCCcHHHHHHHHHhcCCceEEEEcCCCeEEEEEEHHHhh
Confidence 0 00123456888999 8999999999999999999999999999999989999999999999
Q ss_pred hhhc
Q 003889 753 IEDG 756 (788)
Q Consensus 753 ~~~~ 756 (788)
++..
T Consensus 240 ~~~~ 243 (245)
T 3l2b_A 240 STHK 243 (245)
T ss_dssp ----
T ss_pred chhh
Confidence 8754
No 46
>1vr9_A CBS domain protein/ACT domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.70A {Thermotoga maritima} SCOP: d.37.1.1
Probab=99.53 E-value=1.9e-14 Score=146.21 Aligned_cols=120 Identities=20% Similarity=0.163 Sum_probs=104.8
Q ss_pred ccchhhhccCCceEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCCcEEEEEEeHHHHHHHHhcccccCCCCCCCCCCC
Q 003889 583 QMTAKEACGAQKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCDTRG 662 (788)
Q Consensus 583 ~l~v~diM~~~~vv~l~~~~tv~~a~~~L~~~~~~~fPVVd~~~~~~~~lvGiI~r~dL~~lL~~~~~~~~~~~~~~~~~ 662 (788)
..+++++|.++ +++++++.++.++.+.|.+++++++||+|+ +++++|+|+.+|+...+.
T Consensus 12 ~~~~~~~~~~~-~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~----~~~l~Givt~~dl~~~~~---------------- 70 (213)
T 1vr9_A 12 HMKVKKWVTQD-FPMVEESATVRECLHRMRQYQTNECIVKDR----EGHFRGVVNKEDLLDLDL---------------- 70 (213)
T ss_dssp -CBGGGGCBSC-SCEEETTCBHHHHHHHHHHTTSSEEEEECT----TSBEEEEEEGGGGTTSCT----------------
T ss_pred ccCHHHhhcCC-CeEECCCCcHHHHHHHHHHCCCCEEEEEcC----CCEEEEEEEHHHHHhhcC----------------
Confidence 45789999999 999999999999999999999999999997 689999999999843210
Q ss_pred CCCccccccccccccCCCCCCCccccccCccccccccCcccccCCCCceecCCCCHHHHHHHHHHcCCCEEEEecCCCeE
Q 003889 663 GSKPISHSFSEFVKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRV 742 (788)
Q Consensus 663 ~~~~~~~~~~~~~~~~~~~~~~i~di~~~~~~~~~~idl~~~m~~~p~tV~~~~sl~~a~~lf~~~glr~lpVVd~~g~l 742 (788)
...++++|++++.++++++++.++.++|.+.+.+++||+|++|++
T Consensus 71 -----------------------------------~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~l 115 (213)
T 1vr9_A 71 -----------------------------------DSSVFNKVSLPDFFVHEEDNITHALLLFLEHQEPYLPVVDEEMRL 115 (213)
T ss_dssp -----------------------------------TSBSGGGCBCTTCCEETTSBHHHHHHHHHHCCCSEEEEECTTCBE
T ss_pred -----------------------------------CCcHHHHccCCCEEECCCCcHHHHHHHHHHhCCCEEEEEcCCCEE
Confidence 012445599999999999999999999999999999999988999
Q ss_pred EEEEeHhhhhhhhcCC
Q 003889 743 IGLITRKDLLIEDGED 758 (788)
Q Consensus 743 vGIITr~DLl~~~~~~ 758 (788)
+|+||++|+++.....
T Consensus 116 vGiit~~Dil~~~~~~ 131 (213)
T 1vr9_A 116 KGAVSLHDFLEALIEA 131 (213)
T ss_dssp EEEEEHHHHHHHHHHS
T ss_pred EEEEEHHHHHHHHHHH
Confidence 9999999999976643
No 47
>2oux_A Magnesium transporter; 10001B, structural genomics, PSI-2, P structure initiative, nysgxrc; 2.16A {Enterococcus faecalis} SCOP: a.118.26.1 d.37.1.1
Probab=99.53 E-value=9.9e-15 Score=155.19 Aligned_cols=125 Identities=17% Similarity=0.184 Sum_probs=107.4
Q ss_pred cccchhhhccCCceEEecCcccHHHHHHHHhhC-----CCCeeEEeeCCCCCCcEEEEEEeHHHHHHHHhcccccCCCCC
Q 003889 582 RQMTAKEACGAQKVVSLPRIIKVADVVSILRTN-----KHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPL 656 (788)
Q Consensus 582 ~~l~v~diM~~~~vv~l~~~~tv~~a~~~L~~~-----~~~~fPVVd~~~~~~~~lvGiI~r~dL~~lL~~~~~~~~~~~ 656 (788)
...+|+++|+++ ++++++++++.++.+.|+++ +++.+||+|+ +++++|+|+.+|+... ..
T Consensus 135 ~~~~v~~iM~~~-~~~v~~~~tv~ea~~~~~~~~~~~~~~~~~pVvd~----~~~lvGivt~~dll~~---~~------- 199 (286)
T 2oux_A 135 EDETAGAIMTTE-FVSIVANQTVRSAMYVLKNQADMAETIYYVYVVDQ----ENHLVGVISLRDLIVN---DD------- 199 (286)
T ss_dssp CTTBHHHHCBSC-CCEECSSSBHHHHHHHHHHHCSSCSCCSEEEEECT----TCBEEEEEEHHHHTTS---CT-------
T ss_pred ChHHHHHhCCCC-ceEECCCCcHHHHHHHHHHcccCccceeEEEEEcC----CCeEEEEEEHHHHHcC---CC-------
Confidence 467999999998 99999999999999999987 7788999998 7899999999998431 00
Q ss_pred CCCCCCCCCccccccccccccCCCCCCCccccccCccccccccCcccccCCCCceecCCCCHHHHHHHHHHcCCCEEEEe
Q 003889 657 PCDTRGGSKPISHSFSEFVKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVV 736 (788)
Q Consensus 657 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~di~~~~~~~~~~idl~~~m~~~p~tV~~~~sl~~a~~lf~~~glr~lpVV 736 (788)
..+++++|++++.+|++++++.++.++|.+++++++|||
T Consensus 200 -----------------------------------------~~~v~~im~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVV 238 (286)
T 2oux_A 200 -----------------------------------------DTLIADILNERVISVHVGDDQEDVAQTIRDYDFLAVPVT 238 (286)
T ss_dssp -----------------------------------------TSBHHHHSBSCCCCEETTSBHHHHHHHHHHHTCSEEEEE
T ss_pred -----------------------------------------CCcHHHHcCCCCeeecCCCCHHHHHHHHHHcCCcEEEEE
Confidence 122445599999999999999999999999999999999
Q ss_pred cCCCeEEEEEeHhhhhhhhcCCCccc
Q 003889 737 PRASRVIGLITRKDLLIEDGEDSTTV 762 (788)
Q Consensus 737 d~~g~lvGIITr~DLl~~~~~~~~~~ 762 (788)
|++|+++|+||++|+++.+.++..+.
T Consensus 239 d~~g~lvGiIT~~Dil~~i~~e~~ed 264 (286)
T 2oux_A 239 DYDDHLLGIVTVDDIIDVIDDEAASD 264 (286)
T ss_dssp CTTCBEEEEEEHHHHHHHHHHHHHC-
T ss_pred cCCCeEEEEEEHHHHHHHHHHHhHHH
Confidence 99899999999999999877654333
No 48
>3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase; HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB: 3pc2_A* 3pc4_A*
Probab=99.52 E-value=3.1e-14 Score=164.16 Aligned_cols=151 Identities=13% Similarity=0.098 Sum_probs=123.4
Q ss_pred CccHHHHHHHHcCCCCCCCCchhhhcccchhhhccCCceEEecCc-ccHHHHHHHHhhCCCCeeEEee-CCCCCCcEEEE
Q 003889 557 SEGLYEEQAHLRGVPLLESRPKYKMRQMTAKEACGAQKVVSLPRI-IKVADVVSILRTNKHNGFPVID-HSRNGERLVIG 634 (788)
Q Consensus 557 ~~~iy~~~l~~kg~p~l~~~~~~~l~~l~v~diM~~~~vv~l~~~-~tv~~a~~~L~~~~~~~fPVVd-~~~~~~~~lvG 634 (788)
..-.++.++..+++........+.+...+|+|+|+++ +++++++ +++.++++.|.+++++.+||+| + +++++|
T Consensus 357 s~~~~~~~l~~rg~~~~~~~~~~~l~~~~V~diM~~~-~vtv~~~~~tv~ea~~~m~~~~~~~lpVvd~~----~g~lvG 431 (527)
T 3pc3_A 357 TKFVSDNWMEARNFKEPVNEHGHWWWSLAIAELELPA-PPVILKSDATVGEAIALMKKHRVDQLPVVDQD----DGSVLG 431 (527)
T ss_dssp TTTTSHHHHHHTTSSCCCCTTCCTTTTSBGGGGCCCC-CSCCEETTCBHHHHHHHHHHHTCSEEEEECTT----TCCEEE
T ss_pred hhhhcHHHHHhcCCccccccccccccCCcHHHhCcCC-CeEEcCCCCcHHHHHHHHHHcCCCeEEEEECC----CCEEEE
Confidence 4445567777888755444444557889999999998 9999999 9999999999999999999999 5 689999
Q ss_pred EEeHHHHHHHHhcccccCCCCCCCCCCCCCCccccccccccccCCCCCCCccccccCccccccccCcccccCCCCceecC
Q 003889 635 LVLRSHLLVLLQSKVDFQHSPLPCDTRGGSKPISHSFSEFVKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPE 714 (788)
Q Consensus 635 iI~r~dL~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~di~~~~~~~~~~idl~~~m~~~p~tV~~ 714 (788)
+|+++||++.+..+. . . ...+++++|++++.+|++
T Consensus 432 iVt~~Dll~~l~~~~-~----------------------------~----------------~~~~V~~im~~~~~~v~~ 466 (527)
T 3pc3_A 432 VVGQETLITQIVSMN-R----------------------------Q----------------QSDPAIKALNKRVIRLNE 466 (527)
T ss_dssp EEEHHHHHHHHHHHC-C----------------------------C----------------TTSBGGGGEETTCCEEET
T ss_pred EEEHHHHHHHHHhcc-C----------------------------c----------------CCCcHHHHhcCCCeEECC
Confidence 999999988765432 0 0 012345559999999999
Q ss_pred CCCHHHHHHHHHHcCCCEEEEecCC----CeEEEEEeHhhhhhhhcCCC
Q 003889 715 DMSLSKVYNLFRQLGLRHIFVVPRA----SRVIGLITRKDLLIEDGEDS 759 (788)
Q Consensus 715 ~~sl~~a~~lf~~~glr~lpVVd~~----g~lvGIITr~DLl~~~~~~~ 759 (788)
++++.++.++|.+.+. +||||++ |+++||||++||++++.++.
T Consensus 467 ~~~l~~a~~~m~~~~~--~pVVd~~~~~~g~lvGIVT~~Dll~~l~~~~ 513 (527)
T 3pc3_A 467 SEILGKLARVLEVDPS--VLILGKNPAGKVELKALATKLDVTTFIAAGK 513 (527)
T ss_dssp TSBHHHHHHHHTTCSE--EEEEEECSSSCEEEEEEEEHHHHHHHHHTCC
T ss_pred CCcHHHHHHHHhhCCE--EEEEeCCcccCCeEEEEEEHHHHHHHHHhcc
Confidence 9999999999977664 7999984 99999999999999987655
No 49
>2yvy_A MGTE, Mg2+ transporter MGTE; membrane protein, transport protein; 2.30A {Thermus thermophilus} PDB: 2yvz_A
Probab=99.51 E-value=5.5e-14 Score=148.83 Aligned_cols=125 Identities=20% Similarity=0.246 Sum_probs=104.4
Q ss_pred cccchhhhccCCceEEecCcccHHHHHHHHhhC-----CCCeeEEeeCCCCCCcEEEEEEeHHHHHHHHhcccccCCCCC
Q 003889 582 RQMTAKEACGAQKVVSLPRIIKVADVVSILRTN-----KHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPL 656 (788)
Q Consensus 582 ~~l~v~diM~~~~vv~l~~~~tv~~a~~~L~~~-----~~~~fPVVd~~~~~~~~lvGiI~r~dL~~lL~~~~~~~~~~~ 656 (788)
...+++++|+++ ++++++++++.++.+.|+++ ++..+||+|+ +++++|+|+.+|++.. ..
T Consensus 133 ~~~~v~~iM~~~-~~~v~~~~tv~ea~~~~~~~~~~~~~~~~~~Vvd~----~~~lvGivt~~dll~~---~~------- 197 (278)
T 2yvy_A 133 EEDEAGGLMTPE-YVAVREGMTVEEVLRFLRRAAPDAETIYYIYVVDE----KGRLKGVLSLRDLIVA---DP------- 197 (278)
T ss_dssp CTTBGGGTCBSC-CCEECTTSBHHHHHHHHHHHTTTCSCSSEEEEECT----TCBEEEEEEHHHHHHS---CT-------
T ss_pred CcchHHhhcCCC-ceEECCCCcHHHHHHHHHHccCCccceeEEEEECC----CCCEEEEEEHHHHhcC---CC-------
Confidence 356899999998 99999999999999999987 6789999998 7899999999999642 00
Q ss_pred CCCCCCCCCccccccccccccCCCCCCCccccccCccccccccCcccccCCCCceecCCCCHHHHHHHHHHcCCCEEEEe
Q 003889 657 PCDTRGGSKPISHSFSEFVKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVV 736 (788)
Q Consensus 657 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~di~~~~~~~~~~idl~~~m~~~p~tV~~~~sl~~a~~lf~~~glr~lpVV 736 (788)
..+++++|++++.+|++++++.+++++|++.+.+++|||
T Consensus 198 -----------------------------------------~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVv 236 (278)
T 2yvy_A 198 -----------------------------------------RTRVAEIMNPKVVYVRTDTDQEEVARLMADYDFTVLPVV 236 (278)
T ss_dssp -----------------------------------------TCBSTTTSBSSCCCEETTSBHHHHHHHHHHHTCSEEEEE
T ss_pred -----------------------------------------CCcHHHHhCCCCeEEeCCCCHHHHHHHHHhcCCCEEEEE
Confidence 123455599999999999999999999999999999999
Q ss_pred cCCCeEEEEEeHhhhhhhhcCCCccc
Q 003889 737 PRASRVIGLITRKDLLIEDGEDSTTV 762 (788)
Q Consensus 737 d~~g~lvGIITr~DLl~~~~~~~~~~ 762 (788)
|++|+++|+||++|+++.+.++..+.
T Consensus 237 d~~g~lvGivT~~Dil~~i~~e~~ed 262 (278)
T 2yvy_A 237 DEEGRLVGIVTVDDVLDVLEAEATED 262 (278)
T ss_dssp CTTSBEEEEEEHHHHHHHC-------
T ss_pred eCCCeEEEEEEHHHHHHHHHHHhHHH
Confidence 99899999999999999987665443
No 50
>3ddj_A CBS domain-containing protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP: d.37.1.1 d.37.1.1
Probab=99.50 E-value=3.6e-14 Score=151.17 Aligned_cols=136 Identities=16% Similarity=0.207 Sum_probs=113.3
Q ss_pred ccchhhhccCCceEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCCcEEEEEEeHHHHHHHHhcccccCCCCCCCCCCC
Q 003889 583 QMTAKEACGAQKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCDTRG 662 (788)
Q Consensus 583 ~l~v~diM~~~~vv~l~~~~tv~~a~~~L~~~~~~~fPVVd~~~~~~~~lvGiI~r~dL~~lL~~~~~~~~~~~~~~~~~ 662 (788)
..+++++|+++ ++++++++++.++.+.|.+++++.+||+|+ +++++|+|+++|+++.+.... ....
T Consensus 155 ~~~v~~~m~~~-~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~----~~~~~Givt~~dl~~~~~~~~--~~~~------- 220 (296)
T 3ddj_A 155 IFPVKVFMSTK-VQTIYKEVRLDQAVKLMLRRGFRRLPVIDD----DNKVVGIVTVVNAIKQLAKAV--DKLD------- 220 (296)
T ss_dssp CCBHHHHSBCS-CCCEETTSBHHHHHHHHHHHTCSEEEEECT----TSCEEEEEEHHHHHHHHHHHH--HHTC-------
T ss_pred cccHHHhhcCC-CeEECCCCCHHHHHHHHHHcCCCEEEEEcC----CCEEEEEEEHHHHHHHHHHHH--hhcC-------
Confidence 45899999988 999999999999999999999999999997 789999999999988765321 0000
Q ss_pred CCCccccccccccccCCCCCCCccccccCccccccccCcccccCCCCceecCCCCHHHHHHHHHHcCCCEEEEecCCCeE
Q 003889 663 GSKPISHSFSEFVKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRV 742 (788)
Q Consensus 663 ~~~~~~~~~~~~~~~~~~~~~~i~di~~~~~~~~~~idl~~~m~~~p~tV~~~~sl~~a~~lf~~~glr~lpVVd~~g~l 742 (788)
+ +.....+++++|++++++|++++++.+++++|.+.+.+++||+|++|++
T Consensus 221 ------------------------~------~~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~g~~ 270 (296)
T 3ddj_A 221 ------------------------P------DYFYGKVVKDVMVTNLVTIDELASVNRAAAEMIVKRIGSLLILNKDNTI 270 (296)
T ss_dssp ------------------------T------HHHHTCBHHHHSBCCCCBCCTTSBHHHHHHHHHHHTCSEEEEECTTSCE
T ss_pred ------------------------h------hhhcCcCHHHHhCCCCeEECCCCcHHHHHHHHHHcCCCEEEEECCCCeE
Confidence 0 0001234566699999999999999999999999999999999988999
Q ss_pred EEEEeHhhhhhhhcCCCccc
Q 003889 743 IGLITRKDLLIEDGEDSTTV 762 (788)
Q Consensus 743 vGIITr~DLl~~~~~~~~~~ 762 (788)
+|+||++|+++++.++..++
T Consensus 271 ~Giit~~Dil~~l~~~~~~~ 290 (296)
T 3ddj_A 271 RGIITERDLLIALHHILVME 290 (296)
T ss_dssp EEEEEHHHHHHHHHHHHHHH
T ss_pred EEEEcHHHHHHHHHHHhcch
Confidence 99999999999987655433
No 51
>2yzq_A Putative uncharacterized protein PH1780; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus horikoshii} SCOP: d.37.1.1 d.37.1.1
Probab=99.48 E-value=8e-14 Score=147.07 Aligned_cols=156 Identities=14% Similarity=0.094 Sum_probs=107.8
Q ss_pred ccchhhhccCCceEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCCcEEEEEEeHHHHHHHHhcccccCCCCCCCCCCC
Q 003889 583 QMTAKEACGAQKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCDTRG 662 (788)
Q Consensus 583 ~l~v~diM~~~~vv~l~~~~tv~~a~~~L~~~~~~~fPVVd~~~~~~~~lvGiI~r~dL~~lL~~~~~~~~~~~~~~~~~ 662 (788)
..+++++|.++ ++++++++++.++.+.|.+++++.+||+|+ +++++|+|+.+|++.....+..+..... ...
T Consensus 125 ~~~v~~~m~~~-~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~----~~~~~Giit~~dl~~~~~~~~~~~~~~~--~~~- 196 (282)
T 2yzq_A 125 GVEIEPYYQRY-VSIVWEGTPLKAALKALLLSNSMALPVVDS----EGNLVGIVDETDLLRDSEIVRIMKSTEL--AAS- 196 (282)
T ss_dssp GCBSTTTSBSC-CCCEETTSBHHHHHHHHHTCSSSEEEEECT----TSCEEEEEEGGGGGGCGGGCC-------------
T ss_pred cCcHHHHhCCC-CEEECCCCCHHHHHHHHHHcCCcEEEEEcC----CCeEEEEEEHHHHhhhhhhhhhhccchh--hhh-
Confidence 56789999988 999999999999999999999999999997 6899999999999621110000000000 000
Q ss_pred CCCccccccccccccCCCCCCCccccccCccccccccCcccccCCCCceecCCCCHHHHHHHHHHcCCCEEEEecCCCeE
Q 003889 663 GSKPISHSFSEFVKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRV 742 (788)
Q Consensus 663 ~~~~~~~~~~~~~~~~~~~~~~i~di~~~~~~~~~~idl~~~m~~~p~tV~~~~sl~~a~~lf~~~glr~lpVVd~~g~l 742 (788)
.+....... ...+..-.........+++++|++++.+|++++++.+|+++|.+.+++++||+|++|++
T Consensus 197 ------~~~~~~~~~------~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~l 264 (282)
T 2yzq_A 197 ------SEEEWILES------HPTLLFEKFELQLPNKPVAEIMTRDVIVATPHMTVHEVALKMAKYSIEQLPVIRGEGDL 264 (282)
T ss_dssp ----------------------------------CCCBGGGTCBSSCCCBCTTSBHHHHHHHHHHHTCSEEEEEETTTEE
T ss_pred ------hhhhhhccc------chHHHHhHhhhhhccCCHHHhcCCCCceeCCCCCHHHHHHHHHHcCcceeEEECCCCCE
Confidence 000000000 00000000000112355777899999999999999999999999999999999988899
Q ss_pred EEEEeHhhhhhhhcCC
Q 003889 743 IGLITRKDLLIEDGED 758 (788)
Q Consensus 743 vGIITr~DLl~~~~~~ 758 (788)
+|+||++|+++++.++
T Consensus 265 vGiit~~Dil~~~~~~ 280 (282)
T 2yzq_A 265 IGLIRDFDLLKVLVKS 280 (282)
T ss_dssp EEEEEHHHHGGGGCC-
T ss_pred EEEEeHHHHHHHHHhh
Confidence 9999999999987653
No 52
>3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A*
Probab=99.47 E-value=7.3e-14 Score=147.01 Aligned_cols=132 Identities=19% Similarity=0.267 Sum_probs=107.4
Q ss_pred cchhhhccCCceEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCCcEEEEEEeHHHHHHHHhcccccCCCCCCCCCCCC
Q 003889 584 MTAKEACGAQKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCDTRGG 663 (788)
Q Consensus 584 l~v~diM~~~~vv~l~~~~tv~~a~~~L~~~~~~~fPVVd~~~~~~~~lvGiI~r~dL~~lL~~~~~~~~~~~~~~~~~~ 663 (788)
.+++++|+++ +.++++++++.++.+.|.+++++.+||++ +++++|+|+++|+++.+.+...+...
T Consensus 148 ~~v~~~m~~~-~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~-----~~~~~Givt~~dl~~~~~~~~~~~~~--------- 212 (280)
T 3kh5_A 148 EVIDDYITRD-VIVATPGERLKDVARTMVRNGFRRLPVVS-----EGRLVGIITSTDFIKLLGSDWAFNHM--------- 212 (280)
T ss_dssp CBSGGGCBCS-CCCBCTTCBHHHHHHHHHHHTCSEEEEEE-----TTEEEEEEEHHHHHHHHTSHHHHHHH---------
T ss_pred CCHHHHhCCC-CeEECCCCcHHHHHHHHHHcCCCEEEEEE-----CCEEEEEEEHHHHHHHHhhhhhhhhh---------
Confidence 4789999988 99999999999999999999999999994 48999999999998876542200000
Q ss_pred CCccccccccccccCCCCCCCccccccCccccccccCcccccCCCCceecCCCCHHHHHHHHHHcCCCEEEEecCCCeEE
Q 003889 664 SKPISHSFSEFVKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVI 743 (788)
Q Consensus 664 ~~~~~~~~~~~~~~~~~~~~~i~di~~~~~~~~~~idl~~~m~~~p~tV~~~~sl~~a~~lf~~~glr~lpVVd~~g~lv 743 (788)
.. ....+ ....+++++|++++.+|++++++.+++++|.+.+.+++||+|++|+++
T Consensus 213 -----------~~------~~~~~--------~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~g~~~ 267 (280)
T 3kh5_A 213 -----------QT------GNVRE--------ITNVRMEEIMKRDVITAKEGDKLKKIAEIMVTNDIGALPVVDENLRIK 267 (280)
T ss_dssp -----------HS------CCTHH--------HHHCBHHHHSBSSCCCBCTTCBHHHHHHHHHHHTCCEEEEECTTCBEE
T ss_pred -----------cc------cchhh--------hhCCcHHHHhcCCCEEECCCCCHHHHHHHHHHCCCCEEEEECCCCeEE
Confidence 00 00000 012456677999999999999999999999999999999999989999
Q ss_pred EEEeHhhhhhhh
Q 003889 744 GLITRKDLLIED 755 (788)
Q Consensus 744 GIITr~DLl~~~ 755 (788)
|+||++|+++++
T Consensus 268 Givt~~dil~~l 279 (280)
T 3kh5_A 268 GIITEKDVLKYF 279 (280)
T ss_dssp EEEEHHHHGGGG
T ss_pred EEEeHHHHHHhh
Confidence 999999999875
No 53
>3t4n_C Nuclear protein SNF4; CBS domain, nucleotide binding, cytosol, protein binding; HET: ADP; 2.30A {Saccharomyces cerevisiae} PDB: 3tdh_C* 3te5_C* 2qlv_C
Probab=99.46 E-value=1.8e-13 Score=147.67 Aligned_cols=127 Identities=20% Similarity=0.339 Sum_probs=108.4
Q ss_pred ccchhhh---ccCCceEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCCcEEEEEEeHHHHHHHHhcccccCCCCCCCC
Q 003889 583 QMTAKEA---CGAQKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCD 659 (788)
Q Consensus 583 ~l~v~di---M~~~~vv~l~~~~tv~~a~~~L~~~~~~~fPVVd~~~~~~~~lvGiI~r~dL~~lL~~~~~~~~~~~~~~ 659 (788)
+.+++++ |.++ ++++++++++.++.+.|.+++++.+||+|+ +++++|+|+++|+++.+.... +..
T Consensus 186 ~~~v~~~~~~m~~~-~~~v~~~~~~~~~~~~m~~~~~~~~pVvd~----~~~~~Giit~~dl~~~~~~~~-~~~------ 253 (323)
T 3t4n_C 186 KIPIGDLNIITQDN-MKSCQMTTPVIDVIQMLTQGRVSSVPIIDE----NGYLINVYEAYDVLGLIKGGI-YND------ 253 (323)
T ss_dssp CSBGGGTTCSBCTT-CCCBCTTSBHHHHHHHHHHHTCSEEEEECT----TCBEEEEEETTHHHHHHHTTH-HHH------
T ss_pred hCcHHHcCCCCCCC-cEEECCCCcHHHHHHHHHHcCCCEEEEECC----CCeEEEEEeHHHHHHHHhhch-hhh------
Confidence 4588999 8888 999999999999999999999999999998 789999999999998765432 000
Q ss_pred CCCCCCccccccccccccCCCCCCCccccccCccccccccCcccccCC------CCceecCCCCHHHHHHHHHHcCCCEE
Q 003889 660 TRGGSKPISHSFSEFVKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNP------SPYVVPEDMSLSKVYNLFRQLGLRHI 733 (788)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~i~di~~~~~~~~~~idl~~~m~~------~p~tV~~~~sl~~a~~lf~~~glr~l 733 (788)
...+++++|++ ++++|++++++.+++++|.+.+.+++
T Consensus 254 -------------------------------------~~~~v~~~m~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l 296 (323)
T 3t4n_C 254 -------------------------------------LSLSVGEALMRRSDDFEGVYTCTKNDKLSTIMDNIRKARVHRF 296 (323)
T ss_dssp -------------------------------------TTSBHHHHGGGSCTTCCCCEEECTTCBHHHHHHHHHHSCCCEE
T ss_pred -------------------------------------ccCCHHHHHhhccccCCCCEEECCCCCHHHHHHHHHHhCCCEE
Confidence 01234445766 78999999999999999999999999
Q ss_pred EEecCCCeEEEEEeHhhhhhhhcCC
Q 003889 734 FVVPRASRVIGLITRKDLLIEDGED 758 (788)
Q Consensus 734 pVVd~~g~lvGIITr~DLl~~~~~~ 758 (788)
||+|++|+++|+||++|+++++..+
T Consensus 297 ~Vvd~~~~l~Giit~~Dil~~l~~~ 321 (323)
T 3t4n_C 297 FVVDDVGRLVGVLTLSDILKYILLG 321 (323)
T ss_dssp EEECTTSBEEEEEEHHHHHHHHHHC
T ss_pred EEECCCCcEEEEEEHHHHHHHHHhc
Confidence 9999889999999999999987643
No 54
>3ddj_A CBS domain-containing protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP: d.37.1.1 d.37.1.1
Probab=99.43 E-value=2.8e-13 Score=144.23 Aligned_cols=122 Identities=16% Similarity=0.288 Sum_probs=107.0
Q ss_pred ccchhhhccCCceEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCCcEEEEEEeHHHHHHHHhcccccCCCCCCCCCCC
Q 003889 583 QMTAKEACGAQKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCDTRG 662 (788)
Q Consensus 583 ~l~v~diM~~~~vv~l~~~~tv~~a~~~L~~~~~~~fPVVd~~~~~~~~lvGiI~r~dL~~lL~~~~~~~~~~~~~~~~~ 662 (788)
..+++|+|+++ ++++++++++.++++.|.+++++.+||+|+ +++++|+++.+|+.+.+....
T Consensus 92 ~~~v~~im~~~-~~~v~~~~~~~~a~~~m~~~~~~~lpVvd~----~~~lvGivt~~dl~~~~~~~~------------- 153 (296)
T 3ddj_A 92 TTPIIDYMTPN-PVTVYNTSDEFTAINIMVTRNFGSLPVVDI----NDKPVGIVTEREFLLLYKDLD------------- 153 (296)
T ss_dssp TSBGGGTSEES-CCCEETTSCHHHHHHHHHHHTCSEEEEECT----TSCEEEEEEHHHHGGGGGGSC-------------
T ss_pred cccHHHhccCC-CEEEcCCCCHHHHHHHHHHcCCCEEEEEcC----CCcEEEEEeHHHHHHhhhccc-------------
Confidence 56899999998 999999999999999999999999999988 789999999999976543211
Q ss_pred CCCccccccccccccCCCCCCCccccccCccccccccCcccccCCCCceecCCCCHHHHHHHHHHcCCCEEEEecCCCeE
Q 003889 663 GSKPISHSFSEFVKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRV 742 (788)
Q Consensus 663 ~~~~~~~~~~~~~~~~~~~~~~i~di~~~~~~~~~~idl~~~m~~~p~tV~~~~sl~~a~~lf~~~glr~lpVVd~~g~l 742 (788)
. ...++++|++++.++++++++.+++++|.+.+.+++||+|++|++
T Consensus 154 ------------------~----------------~~~v~~~m~~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~~~~ 199 (296)
T 3ddj_A 154 ------------------E----------------IFPVKVFMSTKVQTIYKEVRLDQAVKLMLRRGFRRLPVIDDDNKV 199 (296)
T ss_dssp ------------------C----------------CCBHHHHSBCSCCCEETTSBHHHHHHHHHHHTCSEEEEECTTSCE
T ss_pred ------------------c----------------cccHHHhhcCCCeEECCCCCHHHHHHHHHHcCCCEEEEEcCCCEE
Confidence 0 113445588999999999999999999999999999999988999
Q ss_pred EEEEeHhhhhhhhc
Q 003889 743 IGLITRKDLLIEDG 756 (788)
Q Consensus 743 vGIITr~DLl~~~~ 756 (788)
+|+||++|+++...
T Consensus 200 ~Givt~~dl~~~~~ 213 (296)
T 3ddj_A 200 VGIVTVVNAIKQLA 213 (296)
T ss_dssp EEEEEHHHHHHHHH
T ss_pred EEEEEHHHHHHHHH
Confidence 99999999998765
No 55
>2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A {Thermus thermophilus} PDB: 2yvx_A
Probab=99.42 E-value=2.2e-13 Score=154.70 Aligned_cols=122 Identities=20% Similarity=0.254 Sum_probs=106.3
Q ss_pred cccchhhhccCCceEEecCcccHHHHHHHHhhC-----CCCeeEEeeCCCCCCcEEEEEEeHHHHHHHHhcccccCCCCC
Q 003889 582 RQMTAKEACGAQKVVSLPRIIKVADVVSILRTN-----KHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPL 656 (788)
Q Consensus 582 ~~l~v~diM~~~~vv~l~~~~tv~~a~~~L~~~-----~~~~fPVVd~~~~~~~~lvGiI~r~dL~~lL~~~~~~~~~~~ 656 (788)
...+++++|+++ +++++++++++++.+.++++ +++.+||+|+ +++++|+|+.+|++.. ..
T Consensus 153 ~~~~v~~iM~~~-~v~v~~~~tv~ea~~~~~~~~~~~~~~~~ipVvd~----~~~lvGiVt~~Dll~~---~~------- 217 (473)
T 2zy9_A 153 EEDEAGGLMTPE-YVAVREGMTVEEVLRFLRRAAPDAETIYYIYVVDE----KGRLKGVLSLRDLIVA---DP------- 217 (473)
T ss_dssp CTTBSTTTCBSC-EEEECTTCBHHHHHHHHHHHGGGCSEEEEEEEECT----TSBEEEEEEHHHHHHS---CT-------
T ss_pred CCCCHHHhCCCC-ceEeCCCCcHHHHHHHHHhccCCcCceeEEEEECC----CCcEEEEEEHHHHhcC---CC-------
Confidence 467899999998 99999999999999999986 4689999998 7899999999999541 10
Q ss_pred CCCCCCCCCccccccccccccCCCCCCCccccccCccccccccCcccccCCCCceecCCCCHHHHHHHHHHcCCCEEEEe
Q 003889 657 PCDTRGGSKPISHSFSEFVKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVV 736 (788)
Q Consensus 657 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~di~~~~~~~~~~idl~~~m~~~p~tV~~~~sl~~a~~lf~~~glr~lpVV 736 (788)
..+++++|++++++|+++++++++.++|++++.+.+|||
T Consensus 218 -----------------------------------------~~~v~dim~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVV 256 (473)
T 2zy9_A 218 -----------------------------------------RTRVAEIMNPKVVYVRTDTDQEEVARLMADYDFTVLPVV 256 (473)
T ss_dssp -----------------------------------------TSBGGGTSBSSCCCEESSSBHHHHHHHHHHHTCSEEEEE
T ss_pred -----------------------------------------CCcHHHHhCCCCeEEeCCCcHHHHHHHHHhcCCcEEEEE
Confidence 123455599999999999999999999999999999999
Q ss_pred cCCCeEEEEEeHhhhhhhhcCCC
Q 003889 737 PRASRVIGLITRKDLLIEDGEDS 759 (788)
Q Consensus 737 d~~g~lvGIITr~DLl~~~~~~~ 759 (788)
|++|+++|+||++|+++...++.
T Consensus 257 De~g~lvGiIT~~Dil~~i~~e~ 279 (473)
T 2zy9_A 257 DEEGRLVGIVTVDDVLDVLEAEA 279 (473)
T ss_dssp CTTSBEEEEEEHHHHHHHHHHHH
T ss_pred cCCCEEEEEEehHhhHHHHHHHh
Confidence 99999999999999999876543
No 56
>3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A*
Probab=99.42 E-value=1.2e-12 Score=137.59 Aligned_cols=123 Identities=20% Similarity=0.349 Sum_probs=107.2
Q ss_pred ccchhhhccCCceEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCCcEEEEEEeHHHHHHHHhcccccCCCCCCCCCCC
Q 003889 583 QMTAKEACGAQKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCDTRG 662 (788)
Q Consensus 583 ~l~v~diM~~~~vv~l~~~~tv~~a~~~L~~~~~~~fPVVd~~~~~~~~lvGiI~r~dL~~lL~~~~~~~~~~~~~~~~~ 662 (788)
+.+++|+|+++ ++++++++++.++++.|.+++++.+||+|+ +++++|+++.+|+.+.+.... .
T Consensus 83 ~~~v~~im~~~-~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~----~~~~~Givt~~dl~~~~~~~~--~---------- 145 (280)
T 3kh5_A 83 NEPVREIMEEN-VITLKENADIDEAIETFLTKNVGGAPIVND----ENQLISLITERDVIRALLDKI--D---------- 145 (280)
T ss_dssp TSBGGGTSBCS-CCCEETTCBHHHHHHHHHHTTCSEEEEECT----TCBEEEEEEHHHHHHHHGGGS--C----------
T ss_pred hhhHHHhcCCC-CEEECCCCCHHHHHHHHHhCCCCEEEEEcC----CCEEEEEEEHHHHHHHHhhcC--C----------
Confidence 46899999998 999999999999999999999999999998 799999999999988765432 0
Q ss_pred CCCccccccccccccCCCCCCCccccccCccccccccCcccccCCCCceecCCCCHHHHHHHHHHcCCCEEEEecCCCeE
Q 003889 663 GSKPISHSFSEFVKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRV 742 (788)
Q Consensus 663 ~~~~~~~~~~~~~~~~~~~~~~i~di~~~~~~~~~~idl~~~m~~~p~tV~~~~sl~~a~~lf~~~glr~lpVVd~~g~l 742 (788)
. ..+++++|++++.++++++++.++++.|.+.+.+++||+ ++|++
T Consensus 146 ------------------~----------------~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv-~~~~~ 190 (280)
T 3kh5_A 146 ------------------E----------------NEVIDDYITRDVIVATPGERLKDVARTMVRNGFRRLPVV-SEGRL 190 (280)
T ss_dssp ------------------T----------------TCBSGGGCBCSCCCBCTTCBHHHHHHHHHHHTCSEEEEE-ETTEE
T ss_pred ------------------C----------------CCCHHHHhCCCCeEECCCCcHHHHHHHHHHcCCCEEEEE-ECCEE
Confidence 0 112445588999999999999999999999999999999 45999
Q ss_pred EEEEeHhhhhhhhcC
Q 003889 743 IGLITRKDLLIEDGE 757 (788)
Q Consensus 743 vGIITr~DLl~~~~~ 757 (788)
+|+||++|+++...+
T Consensus 191 ~Givt~~dl~~~~~~ 205 (280)
T 3kh5_A 191 VGIITSTDFIKLLGS 205 (280)
T ss_dssp EEEEEHHHHHHHHTS
T ss_pred EEEEEHHHHHHHHhh
Confidence 999999999988753
No 57
>2qrd_G Protein C1556.08C; AMPK, ADP, ATP-binding, kinase, nucleotide-binding, serine/T protein kinase, transferase, CBS domain; HET: ADP ATP; 2.41A {Schizosaccharomyces pombe} PDB: 2qrc_G* 2qr1_G* 2qre_G* 2oox_G* 2ooy_G*
Probab=99.40 E-value=1.2e-12 Score=141.82 Aligned_cols=129 Identities=16% Similarity=0.272 Sum_probs=108.1
Q ss_pred ccchhh---hccCCceEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCCcEEEEEEeHHHHHHHHhcccccCCCCCCCC
Q 003889 583 QMTAKE---ACGAQKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCD 659 (788)
Q Consensus 583 ~l~v~d---iM~~~~vv~l~~~~tv~~a~~~L~~~~~~~fPVVd~~~~~~~~lvGiI~r~dL~~lL~~~~~~~~~~~~~~ 659 (788)
..+++| +|.++ +.++++++++.++.+.|.+++++.+||+|+ +++++|+|+++|+++.+.... +..
T Consensus 181 ~~~v~~l~~~m~~~-~~~v~~~~~~~~~~~~m~~~~~~~~~Vvd~----~~~~~Giit~~dl~~~~~~~~-~~~------ 248 (334)
T 2qrd_G 181 RVPLNQMTIGTWSN-LATASMETKVYDVIKMLAEKNISAVPIVNS----EGTLLNVYESVDVMHLIQDGD-YSN------ 248 (334)
T ss_dssp CCBGGGSSCSBCSS-CCCBCTTSBHHHHHHHHHHHTCSEEEEECT----TCBEEEEEETHHHHHHHTTSC-GGG------
T ss_pred hCcHHHhCCcccCC-ceEECCCCcHHHHHHHHHHcCCcEEEEEcC----CCcEEEEEEHHHHHHHhhccc-ccc------
Confidence 457888 58888 999999999999999999999999999997 789999999999988754321 000
Q ss_pred CCCCCCccccccccccccCCCCCCCccccccCccccccccCcccccC------CCCceecCCCCHHHHHHHHHHcCCCEE
Q 003889 660 TRGGSKPISHSFSEFVKPASSKGLSIDDIHLSSDDMEMYIDLGPFLN------PSPYVVPEDMSLSKVYNLFRQLGLRHI 733 (788)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~i~di~~~~~~~~~~idl~~~m~------~~p~tV~~~~sl~~a~~lf~~~glr~l 733 (788)
...+++++|+ +++.+|++++++.+++++|.+.+.+++
T Consensus 249 -------------------------------------~~~~v~~~m~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l 291 (334)
T 2qrd_G 249 -------------------------------------LDLSVGEALLKRPANFDGVHTCRATDRLDGIFDAIKHSRVHRL 291 (334)
T ss_dssp -------------------------------------GGSBHHHHHTTCCTTCCCCCEECTTCBHHHHHHHHHHSCCCEE
T ss_pred -------------------------------------ccCcHHHHHhcccccCCCCEEECCCCcHHHHHHHHHHcCCCEE
Confidence 0122444576 478999999999999999999999999
Q ss_pred EEecCCCeEEEEEeHhhhhhhhcCCCc
Q 003889 734 FVVPRASRVIGLITRKDLLIEDGEDST 760 (788)
Q Consensus 734 pVVd~~g~lvGIITr~DLl~~~~~~~~ 760 (788)
||+|++|+++|+||++|+++++.++..
T Consensus 292 ~Vvd~~g~l~Giit~~dil~~~~~~~~ 318 (334)
T 2qrd_G 292 FVVDENLKLEGILSLADILNYIIYDKT 318 (334)
T ss_dssp EEECTTCBEEEEEEHHHHHHHHHSCCC
T ss_pred EEECCCCeEEEEEeHHHHHHHHHhccc
Confidence 999988999999999999999876554
No 58
>2yzq_A Putative uncharacterized protein PH1780; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus horikoshii} SCOP: d.37.1.1 d.37.1.1
Probab=99.39 E-value=4.7e-13 Score=141.13 Aligned_cols=118 Identities=20% Similarity=0.309 Sum_probs=88.7
Q ss_pred cchhhhccCCceEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCCcEEEEEEeHHHHHHHHhcccccCCCCCCCCCCCC
Q 003889 584 MTAKEACGAQKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCDTRGG 663 (788)
Q Consensus 584 l~v~diM~~~~vv~l~~~~tv~~a~~~L~~~~~~~fPVVd~~~~~~~~lvGiI~r~dL~~lL~~~~~~~~~~~~~~~~~~ 663 (788)
++++|+|+++ ++++++++++.++.+.|.+++++.+||+|+ +++++|+++.+|+...+.+
T Consensus 1 m~v~~im~~~-~~~v~~~~~~~~a~~~~~~~~~~~~pV~d~----~~~~~Giv~~~dl~~~~~~---------------- 59 (282)
T 2yzq_A 1 MRVKTIMTQN-PVTITLPATRNYALELFKKYKVRSFPVVNK----EGKLVGIISVKRILVNPDE---------------- 59 (282)
T ss_dssp CBHHHHSEES-CCCEESSCC------------CCEEEEECT----TCCEEEEEESSCC----------------------
T ss_pred CchHHhccCC-CeEECCCCcHHHHHHHHHHcCCCeEEEEcC----CCcEEEEEEHHHHHhhhcc----------------
Confidence 5789999988 999999999999999999999999999997 6899999999998643211
Q ss_pred CCccccccccccccCCCCCCCccccccCccccccccCcccccCCCCceecCCCCHHHHHHHHHHcCCCEEEEecCCCeEE
Q 003889 664 SKPISHSFSEFVKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVI 743 (788)
Q Consensus 664 ~~~~~~~~~~~~~~~~~~~~~i~di~~~~~~~~~~idl~~~m~~~p~tV~~~~sl~~a~~lf~~~glr~lpVVd~~g~lv 743 (788)
..++++|.+++.++++++++.++++.|.+.+.+++||+|++|+++
T Consensus 60 -----------------------------------~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~~~Vvd~~~~~~ 104 (282)
T 2yzq_A 60 -----------------------------------EQLAMLVKRDVPVVKENDTLKKAAKLMLEYDYRRVVVVDSKGKPV 104 (282)
T ss_dssp ---------------------------------------CCCBSCCCEEETTSBHHHHHHHHHHHTCSEEEEECTTSCEE
T ss_pred -----------------------------------CCHHHHcCCCCcEECCCCcHHHHHHHHHHcCCCEEEEEcCCCEEE
Confidence 123445888889999999999999999999999999999989999
Q ss_pred EEEeHhhhhh-hhcC
Q 003889 744 GLITRKDLLI-EDGE 757 (788)
Q Consensus 744 GIITr~DLl~-~~~~ 757 (788)
|+||++|+++ ...+
T Consensus 105 Giit~~di~~~~~~~ 119 (282)
T 2yzq_A 105 GILTVGDIIRRYFAK 119 (282)
T ss_dssp EEEEHHHHHHHTTTT
T ss_pred EEEEHHHHHHHHHhc
Confidence 9999999998 6654
No 59
>2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Rattus norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E* 2y8l_E* 2y8q_E* 2y94_E* 2ya3_E*
Probab=99.34 E-value=3.3e-12 Score=138.15 Aligned_cols=143 Identities=12% Similarity=0.080 Sum_probs=110.0
Q ss_pred hhhcccchhhhc--cCCceEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCC-cEEEEEEeHHHHHHHHhcccccCCCC
Q 003889 579 YKMRQMTAKEAC--GAQKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGE-RLVIGLVLRSHLLVLLQSKVDFQHSP 655 (788)
Q Consensus 579 ~~l~~l~v~diM--~~~~vv~l~~~~tv~~a~~~L~~~~~~~fPVVd~~~~~~-~~lvGiI~r~dL~~lL~~~~~~~~~~ 655 (788)
..+.+.+++|+| +++ ++++++++++.++.+.|.+++++.+||+|+ + ++++|+|+.+|++..+.... -....
T Consensus 30 ~~l~~~~v~dim~p~~~-v~~v~~~~~v~~a~~~~~~~~~~~~pV~d~----~~~~~vGivt~~Dll~~l~~~~-~~~~~ 103 (330)
T 2v8q_E 30 TFMKSHRCYDLIPTSSK-LVVFDTSLQVKKAFFALVTNGVRAAPLWDS----KKQSFVGMLTITDFINILHRYY-KSALV 103 (330)
T ss_dssp HHHHHSBGGGGSCSEEE-EEEEETTSBHHHHHHHHHHHTCSEEEEEET----TTTEEEEEEEHHHHHHHHHHHH-HHHTT
T ss_pred HHHHcCcHhhhccCCCc-EEEEeCCCcHHHHHHHHHHcCCcEEEEEeC----CCCeEEEEEEHHHHHHHHHHHH-hcccc
Confidence 346788999999 667 999999999999999999999999999998 4 79999999999988664311 00000
Q ss_pred CCCCCCCCCCccccccccccccCCCCCCCccccccCccccccccCcccccCCCCceecCCCCHHHHHHHHHHcCCCEEEE
Q 003889 656 LPCDTRGGSKPISHSFSEFVKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFV 735 (788)
Q Consensus 656 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~di~~~~~~~~~~idl~~~m~~~p~tV~~~~sl~~a~~lf~~~glr~lpV 735 (788)
. .. + + ...+++++ .-.+.++|.+++.++++++++.+++++|++.+.+++||
T Consensus 104 ~---~~----~----l---------~~~~~~~~---------~~~~~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~V 154 (330)
T 2v8q_E 104 Q---IY----E----L---------EEHKIETW---------REVYLQDSFKPLVCISPNASLFDAVSSLIRNKIHRLPV 154 (330)
T ss_dssp T---CC----C----G---------GGCBHHHH---------HHHHSSSSCCCCCCBCTTSBHHHHHHHHHHHTCSCEEE
T ss_pred c---hh----H----H---------hhccHHHH---------HHHHhhcccCCceEeCCCCCHHHHHHHHHHCCCCeEEE
Confidence 0 00 0 0 00001110 01234568999999999999999999999999999999
Q ss_pred ecC-CCeEEEEEeHhhhhhhhc
Q 003889 736 VPR-ASRVIGLITRKDLLIEDG 756 (788)
Q Consensus 736 Vd~-~g~lvGIITr~DLl~~~~ 756 (788)
+|+ +|+++|+||++|++++..
T Consensus 155 vd~~~~~~~Givt~~dl~~~~~ 176 (330)
T 2v8q_E 155 IDPESGNTLYILTHKRILKFLK 176 (330)
T ss_dssp ECTTTCCEEEEECHHHHHHHHH
T ss_pred EeCCCCcEEEEEcHHHHHHHHH
Confidence 998 799999999999998764
No 60
>2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Rattus norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E* 2y8l_E* 2y8q_E* 2y94_E* 2ya3_E*
Probab=99.32 E-value=3.9e-12 Score=137.61 Aligned_cols=133 Identities=14% Similarity=0.193 Sum_probs=104.9
Q ss_pred cchhhh--cc-CCceEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCCcEEEEEEeHHHHHHHHhcccccCCCCCCCCC
Q 003889 584 MTAKEA--CG-AQKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCDT 660 (788)
Q Consensus 584 l~v~di--M~-~~~vv~l~~~~tv~~a~~~L~~~~~~~fPVVd~~~~~~~~lvGiI~r~dL~~lL~~~~~~~~~~~~~~~ 660 (788)
.+++++ |. ++ ++++++++++.++.+.|.+++++.+||+|+ +++++|+|+++|+.+.+..+. +..
T Consensus 190 ~~v~~~~v~~~~~-~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~----~~~l~Giit~~dl~~~~~~~~-~~~------- 256 (330)
T 2v8q_E 190 KSLEELQIGTYAN-IAMVRTTTPVYVALGIFVQHRVSALPVVDE----KGRVVDIYSKFDVINLAAEKT-YNN------- 256 (330)
T ss_dssp SBHHHHTCSBCSS-CCCEETTCBHHHHHHHHHHHCCSEEEEECT----TSBEEEEEEGGGTGGGGGSSC-CCC-------
T ss_pred CCHHHhcccCcCC-ceEECCCCCHHHHHHHHHHcCCCeEEEECC----CCcEEEEEEHHHHHHHHhccc-ccc-------
Confidence 456666 65 66 889999999999999999999999999997 689999999999976543221 000
Q ss_pred CCCCCccccccccccccCCCCCCCccccccCccccccccCcccccCCCCceecCCCCHHHHHHHHHHcCCCEEEEecCCC
Q 003889 661 RGGSKPISHSFSEFVKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRAS 740 (788)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~~~~~~i~di~~~~~~~~~~idl~~~m~~~p~tV~~~~sl~~a~~lf~~~glr~lpVVd~~g 740 (788)
...++.++ ++.+..|.+++.+|++++++.+++++|.+.+.+++||+|++|
T Consensus 257 --------------------~~~~v~~~----------~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~g 306 (330)
T 2v8q_E 257 --------------------LDVSVTKA----------LQHRSHYFEGVLKCYLHETLEAIINRLVEAEVHRLVVVDEHD 306 (330)
T ss_dssp --------------------CSSBHHHH----------GGGCCSCCCSCCEECTTSBHHHHHHHHHHHTCSEEEEECTTS
T ss_pred --------------------ccCcHHHH----------HhccccccCCCeEECCCCcHHHHHHHHHHCCCcEEEEEcCCC
Confidence 00122222 111223568899999999999999999999999999999989
Q ss_pred eEEEEEeHhhhhhhhcCCC
Q 003889 741 RVIGLITRKDLLIEDGEDS 759 (788)
Q Consensus 741 ~lvGIITr~DLl~~~~~~~ 759 (788)
+++|+||++|+++++.++.
T Consensus 307 ~l~Giit~~Dil~~~~~~~ 325 (330)
T 2v8q_E 307 VVKGIVSLSDILQALVLTG 325 (330)
T ss_dssp BEEEEEEHHHHHHHHHSSC
T ss_pred cEEEEEeHHHHHHHHHhhc
Confidence 9999999999999887654
No 61
>4ene_A CLC-EC1, H(+)/CL(-) exchange transporter CLCA; membrane protein, coupled ION transporter, cell membrane, TR protein; HET: DMU MAL; 2.40A {Escherichia coli k-12} PDB: 1ots_A 2fee_A 2h2p_A 2exw_A 1kpk_A 2exy_A 2fed_A 2fec_A 1otu_A 2htl_A 2ht2_A 3ejy_A 1ott_A 2h2s_A 4fg6_A 2ht4_A 4ftp_A 3ejz_A 2ht3_A 2htk_A ...
Probab=99.32 E-value=1.8e-11 Score=137.56 Aligned_cols=185 Identities=18% Similarity=0.223 Sum_probs=133.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhhhccccccCCCCHHHHHHHH
Q 003889 78 FALLIGIGTGLAAVFINISVENFAGWKFSLTFSIIQKSYFAGFLVYILINLILVFSSVYIITKFAPAAAGSGIPEIKGYL 157 (788)
Q Consensus 78 ~~~liGv~~Gl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~a~GsGipev~~~l 157 (788)
..+++|+++|+++.+|+....+.++++.+. . ... +..+.....+.+++.+.+ .++.|+..|+|.+.++..+
T Consensus 239 ~~illGi~~Gl~g~~f~~~~~~~~~~~~~~----~-~~~---~~~~~~~~~l~g~~~g~l-~~~~p~~~G~G~~~i~~~~ 309 (446)
T 4ene_A 239 LYLILGIIFGIFGPIFNKWVLGMQDLLHRV----H-GGN---ITKWVLMGGAIGGLCGLL-GFVAPATSGGGFNLIPIAT 309 (446)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----H-TTC---HHHHHHHHHHHHHHHHHH-HHHCGGGSSCCSTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----c-ccc---hhHHHHHHHHHHHHHHHH-HHHhHhhcCCcHHHHHHHH
Confidence 568999999999999999988877654322 1 111 111121222233333433 3456999999999999888
Q ss_pred cCcccccchhhHHHHHHHHHHHHHhccCCcccccchHHHHHHHHHHHhhccCccccccccccccccCChhhhhhHHHHhh
Q 003889 158 NGVDIHGILLFRTLIGKIFGSIGSVGGGLALGKEGPLVHTGACIASLLGQGGSTKYHLRYRWLQVFRSDRDRRDLVTCGC 237 (788)
Q Consensus 158 ~g~~~~~~l~~~~l~~K~~~~~lsv~sG~svG~EGP~vhiGa~igs~l~~~~~~~~~l~~~~~~~f~~~~~~r~li~~Ga 237 (788)
+|.. +-..-.-.++.|++.+.+|+++|.+.|...|+.-+||++|..+++.... +++. ...+...+..+||
T Consensus 310 ~~~~-~~~~L~~~~~~K~~~t~lt~gsG~~GGif~Psl~iGA~~G~~~g~~~~~-------~~p~--~~~~~~~~a~vGm 379 (446)
T 4ene_A 310 AGNF-SMGMLVFIFVARVITTLLCFSSGAPGGIFAPMLALGTVLGTAFGMVAVE-------LFPQ--YHLEAGTFAIAGM 379 (446)
T ss_dssp TTCS-CHHHHHHHHHHHHHHHHHHHTTTCSSBSHHHHHHHHHHHHHHHHHHHHH-------HCGG--GTCCHHHHHHHHH
T ss_pred cCCc-hHHHHHHHHHHHHHHHHHHHccCCCcchhHHHHHHHHHHHHHHHHHHHH-------hCCc--cccCHHHHHHHHH
Confidence 7632 1111134578999999999999999999999999999999999863211 1111 1235577899999
Q ss_pred hhhhhhhhcCCccchhhhhhhhchhhhhhhHHHHHHHHHHHHHHHHH
Q 003889 238 AAGVAAAFRAPVGGVLFALEEVTSWWRSQLMWRVFFTSAIVAVVVRS 284 (788)
Q Consensus 238 aAGvaaaF~APigGvlFalE~~~~~~~~~~~~~~~~~~~va~~v~~~ 284 (788)
||-++++.|+|++++++++|++.+ .....+.++++++|..+.+.
T Consensus 380 aa~~a~~~~aPlt~~vl~~Eltg~---~~~~lpl~ia~~ia~~v~~~ 423 (446)
T 4ene_A 380 GALLAASIRAPLTGIILVLEMTDN---YQLILPMIITGLGATLLAQF 423 (446)
T ss_dssp THHHHHHTCCHHHHHHHHHHHHCC---GGGHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccHHHHHHHHHHHHCC---hhHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999986 45667788888888777664
No 62
>1ots_A Voltage-gated CLC-type chloride channel ERIC; CLC chloride channel, FAB complex, membrane protein; 2.51A {Escherichia coli} SCOP: f.20.1.1 PDB: 2fee_A 2h2p_A 2exw_A 1kpk_A 2exy_A 2htl_A 3ejy_A 2ht2_A 2fed_A 2fec_A 1otu_A 3ejz_A 2ht4_A 2htk_A 2ht3_A 1ott_A 2h2s_A 3det_A 2ez0_A 3nmo_A ...
Probab=99.30 E-value=2.6e-11 Score=137.11 Aligned_cols=185 Identities=17% Similarity=0.222 Sum_probs=133.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhhhccccccCCCCHHHHHHH
Q 003889 77 FFALLIGIGTGLAAVFINISVENFAGWKFSLTFSIIQKSYFAGFLVYILINLILVFSSVYIITKFAPAAAGSGIPEIKGY 156 (788)
Q Consensus 77 ~~~~liGv~~Gl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~a~GsGipev~~~ 156 (788)
...+++|+++|+++.+|+....+.++++.+.. ....+ .+.+ ..++.+++.+.+ .++.|+..|.|.+.++..
T Consensus 253 ~~~illGi~~Gl~g~~f~~~~~~~~~~~~~~~----~~~~~-~~~~---~~~i~gl~~g~l-~~~~P~~lG~G~~~i~~~ 323 (465)
T 1ots_A 253 WLYLILGIIFGIFGPIFNKWVLGMQDLLHRVH----GGNIT-KWVL---MGGAIGGLCGLL-GFVAPATSGGGFNLIPIA 323 (465)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----TTCHH-HHHH---HHHHHHHHHHHH-HHHCGGGSSCSTTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc----cCCch-hHHH---HHHHHHHHHHHH-HHHhHhhcCChHHHHHHH
Confidence 46799999999999999998888776543221 11111 1111 222334444444 345699999999999998
Q ss_pred HcCcccccchhhHHHHHHHHHHHHHhccCCcccccchHHHHHHHHHHHhhccCccccccccccccccCChhhhhhHHHHh
Q 003889 157 LNGVDIHGILLFRTLIGKIFGSIGSVGGGLALGKEGPLVHTGACIASLLGQGGSTKYHLRYRWLQVFRSDRDRRDLVTCG 236 (788)
Q Consensus 157 l~g~~~~~~l~~~~l~~K~~~~~lsv~sG~svG~EGP~vhiGa~igs~l~~~~~~~~~l~~~~~~~f~~~~~~r~li~~G 236 (788)
+++.. +-..-.-.++.|++.+.+|+++|.+.|...|+.-+||++|..+++.. +. +++. ...+...++.+|
T Consensus 324 ~~~~~-~~~~l~~~~~~K~~~t~lt~gsG~~GGif~Psl~iGA~~G~~~g~~~----~~---~~p~--~~~~~~~~alvG 393 (465)
T 1ots_A 324 TAGNF-SMGMLVFIFVARVITTLLCFSSGAPGGIFAPMLALGTVLGTAFGMVA----VE---LFPQ--YHLEAGTFAIAG 393 (465)
T ss_dssp HHTCS-CHHHHHHHHHHHHHHHHHHHHTTCSSBSHHHHHHHHHHHHHHHHHHH----HH---HCGG--GTCCHHHHHHHH
T ss_pred HcCCc-hHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHHHHHHHHHHHHHH----HH---HCCc--ccccHHHHHHHH
Confidence 88621 11123446789999999999999999999999999999999998731 10 1111 123567899999
Q ss_pred hhhhhhhhhcCCccchhhhhhhhchhhhhhhHHHHHHHHHHHHHHHH
Q 003889 237 CAAGVAAAFRAPVGGVLFALEEVTSWWRSQLMWRVFFTSAIVAVVVR 283 (788)
Q Consensus 237 aaAGvaaaF~APigGvlFalE~~~~~~~~~~~~~~~~~~~va~~v~~ 283 (788)
|||-++++.|+|+++++.++|++.+ ...+.+.++++++|..+.+
T Consensus 394 maa~~a~v~raPlt~ivlv~Eltg~---~~~llpl~ia~~iA~~v~~ 437 (465)
T 1ots_A 394 MGALLAASIRAPLTGIILVLEMTDN---YQLILPMIITGLGATLLAQ 437 (465)
T ss_dssp HTHHHHHTSCCHHHHHHHHHHHHCC---GGGHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCC---HHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999975 3455677777777766654
No 63
>3t4n_C Nuclear protein SNF4; CBS domain, nucleotide binding, cytosol, protein binding; HET: ADP; 2.30A {Saccharomyces cerevisiae} PDB: 3tdh_C* 3te5_C* 2qlv_C
Probab=99.28 E-value=1.2e-11 Score=133.23 Aligned_cols=131 Identities=11% Similarity=0.137 Sum_probs=101.2
Q ss_pred chhhhccCCceEEecCcccHHHHHHHHhhCCCCeeEEeeCCC-CCCcEEEEEEeHHHHHHHHhcccccCCCCCCCCCCCC
Q 003889 585 TAKEACGAQKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSR-NGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCDTRGG 663 (788)
Q Consensus 585 ~v~diM~~~~vv~l~~~~tv~~a~~~L~~~~~~~fPVVd~~~-~~~~~lvGiI~r~dL~~lL~~~~~~~~~~~~~~~~~~ 663 (788)
++.++|.++ ++++++++++.++++.|.+++++.+||+|+.. .+.++++|+|+.+|+++.+.... .. .
T Consensus 115 ~~~~~~~~~-~v~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~~~~~l~Givt~~di~~~l~~~~--~~-~-------- 182 (323)
T 3t4n_C 115 RALGVDQLD-TASIHPSRPLFEACLKMLESRSGRIPLIDQDEETHREIVVSVLTQYRILKFVALNC--RE-T-------- 182 (323)
T ss_dssp HHTTC-----CCCBCTTSBHHHHHHHHHHHTCSEEEEEEECTTTCCEEEEEEEEHHHHHHHHHHHC--GG-G--------
T ss_pred HHhCCCCCC-ceEeCCCCcHHHHHHHHHhCCeeEEEEEecCCCCCccceEEEecHHHHHHHHHhcC--Cc-h--------
Confidence 456667888 99999999999999999999999999999721 01114999999999988765422 00 0
Q ss_pred CCccccccccccccCCCCCCCccccccCccccccccCcccc---cCCCCceecCCCCHHHHHHHHHHcCCCEEEEecCCC
Q 003889 664 SKPISHSFSEFVKPASSKGLSIDDIHLSSDDMEMYIDLGPF---LNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRAS 740 (788)
Q Consensus 664 ~~~~~~~~~~~~~~~~~~~~~i~di~~~~~~~~~~idl~~~---m~~~p~tV~~~~sl~~a~~lf~~~glr~lpVVd~~g 740 (788)
+ ....+++++ |.+++.++++++++.++.++|.+.+.+++||+|++|
T Consensus 183 -----------------------~--------~~~~~v~~~~~~m~~~~~~v~~~~~~~~~~~~m~~~~~~~~pVvd~~~ 231 (323)
T 3t4n_C 183 -----------------------H--------FLKIPIGDLNIITQDNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDENG 231 (323)
T ss_dssp -----------------------G--------GCCSBGGGTTCSBCTTCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTC
T ss_pred -----------------------h--------hhhCcHHHcCCCCCCCcEEECCCCcHHHHHHHHHHcCCCEEEEECCCC
Confidence 0 001223444 888999999999999999999999999999999989
Q ss_pred eEEEEEeHhhhhhhhcCC
Q 003889 741 RVIGLITRKDLLIEDGED 758 (788)
Q Consensus 741 ~lvGIITr~DLl~~~~~~ 758 (788)
+++|+||++|+++...+.
T Consensus 232 ~~~Giit~~dl~~~~~~~ 249 (323)
T 3t4n_C 232 YLINVYEAYDVLGLIKGG 249 (323)
T ss_dssp BEEEEEETTHHHHHHHTT
T ss_pred eEEEEEeHHHHHHHHhhc
Confidence 999999999999976643
No 64
>1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1
Probab=99.28 E-value=1.2e-11 Score=141.59 Aligned_cols=118 Identities=14% Similarity=0.228 Sum_probs=103.7
Q ss_pred chhhhccCCceEEecCcccHHHHHHHHhhCCCCeeEEee--CCCCCCcEEEEEEeHHHHHHHHhcccccCCCCCCCCCCC
Q 003889 585 TAKEACGAQKVVSLPRIIKVADVVSILRTNKHNGFPVID--HSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCDTRG 662 (788)
Q Consensus 585 ~v~diM~~~~vv~l~~~~tv~~a~~~L~~~~~~~fPVVd--~~~~~~~~lvGiI~r~dL~~lL~~~~~~~~~~~~~~~~~ 662 (788)
+++|+|.++ ++++++++++.++++.|.+++++.+||+| + +++++|+|+.+|++.. ..
T Consensus 91 ~~~~im~~~-~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~----~~~lvGivt~~Dl~~~---~~------------- 149 (491)
T 1zfj_A 91 RSENGVIID-PFFLTPEHKVSEAEELMQRYRISGVPIVETLA----NRKLVGIITNRDMRFI---SD------------- 149 (491)
T ss_dssp HHTTTTSSS-CCCBCSSSBHHHHHHHHHHTTCSEEEEESCTT----TCBEEEEEEHHHHHHC---SC-------------
T ss_pred hHHhcCcCC-CeEECCCCcHHHHHHHHHHcCCCEEEEEEeCC----CCEEEEEEEHHHHhhh---cc-------------
Confidence 457899998 99999999999999999999999999999 6 6899999999999642 00
Q ss_pred CCCccccccccccccCCCCCCCccccccCccccccccCcccccCC-CCceecCCCCHHHHHHHHHHcCCCEEEEecCCCe
Q 003889 663 GSKPISHSFSEFVKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNP-SPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASR 741 (788)
Q Consensus 663 ~~~~~~~~~~~~~~~~~~~~~~i~di~~~~~~~~~~idl~~~m~~-~p~tV~~~~sl~~a~~lf~~~glr~lpVVd~~g~ 741 (788)
...+++++|++ +++++++++++.+++++|.+++.+++||||++|+
T Consensus 150 ----------------------------------~~~~v~~im~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~ 195 (491)
T 1zfj_A 150 ----------------------------------YNAPISEHMTSEHLVTAAVGTDLETAERILHEHRIEKLPLVDNSGR 195 (491)
T ss_dssp ----------------------------------SSSBTTTSCCCSCCCCEETTCCHHHHHHHHHHTTCSEEEEECTTSB
T ss_pred ----------------------------------CCCcHHHHcCCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCc
Confidence 01234556988 8999999999999999999999999999999999
Q ss_pred EEEEEeHhhhhhhhcC
Q 003889 742 VIGLITRKDLLIEDGE 757 (788)
Q Consensus 742 lvGIITr~DLl~~~~~ 757 (788)
++|+||++|+++...+
T Consensus 196 lvGivt~~Dil~~~~~ 211 (491)
T 1zfj_A 196 LSGLITIKDIEKVIEF 211 (491)
T ss_dssp EEEEEEHHHHHHHHHC
T ss_pred EEEEEEHHHHHHHHhc
Confidence 9999999999998774
No 65
>3nd0_A SLL0855 protein; CLC family CL-/H+ antiporter, CLC_EC1 homolog, transport protein; 3.20A {Synechocystis} PDB: 3q17_A
Probab=99.27 E-value=2.7e-11 Score=136.50 Aligned_cols=181 Identities=17% Similarity=0.181 Sum_probs=131.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhhhccccccCCCCHHHHHHHH
Q 003889 78 FALLIGIGTGLAAVFINISVENFAGWKFSLTFSIIQKSYFAGFLVYILINLILVFSSVYIITKFAPAAAGSGIPEIKGYL 157 (788)
Q Consensus 78 ~~~liGv~~Gl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~a~GsGipev~~~l 157 (788)
+.+++|+++|+++.+|.....+.++++... ...+++.. +.+.+++.+.+ .++.|+..|.|.+.++..+
T Consensus 249 ~~illGi~~Gl~g~lf~~~~~~~~~~~~~~--------~~~~~~~~---~~l~g~~~g~l-~~~~p~~~G~G~~~i~~~~ 316 (466)
T 3nd0_A 249 MFIILGILFGVMGYTFNRGLFKVLDWFDRL--------PPLATKWK---GFLLGSIIGIL-SLFPLPLTDGGDNAVLWAF 316 (466)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--------CHHHHHHH---HHHHHHHHHHH-TTSSSSCSSSSHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--------ccccHHHH---HHHHHHHHHHH-HHHHHHHcCCcHHHHHHHH
Confidence 578899999999999999887776543211 00111111 22334444444 4567999999999999988
Q ss_pred cCcccccchhhHHHHHHHHHHHHHhccCCcccccchHHHHHHHHHHHhhccCccccccccccccccCChhhhhhHHHHhh
Q 003889 158 NGVDIHGILLFRTLIGKIFGSIGSVGGGLALGKEGPLVHTGACIASLLGQGGSTKYHLRYRWLQVFRSDRDRRDLVTCGC 237 (788)
Q Consensus 158 ~g~~~~~~l~~~~l~~K~~~~~lsv~sG~svG~EGP~vhiGa~igs~l~~~~~~~~~l~~~~~~~f~~~~~~r~li~~Ga 237 (788)
+|.. +-..-.-.++.|++.+.+|+++|.+.|...|+.-+||++|..+++.... +++. ...+...++.+||
T Consensus 317 ~~~~-~~~~L~~~~~~K~~~t~lt~gsG~~GGif~Psl~iGA~~G~~~g~~~~~-------~~p~--~~~~~~~~a~vGm 386 (466)
T 3nd0_A 317 NSQS-HFSTLILVFCGRFLLTLICYGSGAIGGIFAPMLGIASIVSVAMARHFHL-------LFPS--QIPEPAVMAIAGM 386 (466)
T ss_dssp TSCC-CHHHHHHHHHHHHHHHHHHHHTTCBCCSHHHHHHHHHHHHHHHHHHHHH-------HCTT--TCSSTHHHHHHTT
T ss_pred cCCc-cHHHHHHHHHHHHHHHHHHHhCCCCCceehHHHHHHHHHHHHHHHHHHH-------hCCc--cccCHHHHHHHHH
Confidence 8632 1111235678999999999999999999999999999999998873111 1111 1345678999999
Q ss_pred hhhhhhhhcCCccchhhhhhhhchhhhhhhHHHHHHHHHHHHHHHH
Q 003889 238 AAGVAAAFRAPVGGVLFALEEVTSWWRSQLMWRVFFTSAIVAVVVR 283 (788)
Q Consensus 238 aAGvaaaF~APigGvlFalE~~~~~~~~~~~~~~~~~~~va~~v~~ 283 (788)
||-++++-|+|++++++++|++.+ .....+.++++++|..+.+
T Consensus 387 aa~~a~v~~aPlt~ivlv~Eltg~---~~~~lpl~ia~~iA~~v~~ 429 (466)
T 3nd0_A 387 GALVAATVRAPLTAILLTIEMTDN---YFVILPLLVTCLVASVVAE 429 (466)
T ss_dssp SHHHHHHHSCHHHHHHHHHHTTCC---CTTHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhhHHHHHHHHHHHHCC---hHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999986 3455667777776666653
No 66
>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor}
Probab=99.26 E-value=1.1e-12 Score=149.13 Aligned_cols=118 Identities=17% Similarity=0.269 Sum_probs=88.7
Q ss_pred cchhhhccCCceEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCCcEEEEEEeHHHHHHHHhcccccCCCCCCCCCCCC
Q 003889 584 MTAKEACGAQKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCDTRGG 663 (788)
Q Consensus 584 l~v~diM~~~~vv~l~~~~tv~~a~~~L~~~~~~~fPVVd~~~~~~~~lvGiI~r~dL~~lL~~~~~~~~~~~~~~~~~~ 663 (788)
.+++++|.++ ++++++++++.++.+.|.+++++++||+|+ +++++|+|+.+||+. . .+
T Consensus 89 k~~~~~m~~d-~v~v~~~~tv~ea~~~m~~~~~s~~PVvd~----~~~lvGiVt~rDL~~---~-----~~--------- 146 (496)
T 4fxs_A 89 KIFEAGVVTH-PVTVRPEQTIADVMELTHYHGFAGFPVVTE----NNELVGIITGRDVRF---V-----TD--------- 146 (496)
T ss_dssp HHCCC--CBC-CCCBCSSSBHHHHHHHHTSSCCCEEEEECS----SSBEEEEEEHHHHTT---C-----CC---------
T ss_pred cccccccccC-ceEECCCCCHHHHHHHHHHcCCcEEEEEcc----CCEEEEEEEHHHHhh---c-----cc---------
Confidence 3557889988 999999999999999999999999999998 789999999999931 0 00
Q ss_pred CCccccccccccccCCCCCCCccccccCccccccccCcccccC-C-CCceecCCCCHHHHHHHHHHcCCCEEEEecCCCe
Q 003889 664 SKPISHSFSEFVKPASSKGLSIDDIHLSSDDMEMYIDLGPFLN-P-SPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASR 741 (788)
Q Consensus 664 ~~~~~~~~~~~~~~~~~~~~~i~di~~~~~~~~~~idl~~~m~-~-~p~tV~~~~sl~~a~~lf~~~glr~lpVVd~~g~ 741 (788)
...+++++|+ + +++++++++++.+++++|++++++.+||||++|+
T Consensus 147 ---------------------------------~~~~v~diM~p~~~~vtv~~~~~l~ea~~~m~~~~i~~lpVVDe~G~ 193 (496)
T 4fxs_A 147 ---------------------------------LTKSVAAVMTPKERLATVKEGATGAEVQEKMHKARVEKILVVNDEFQ 193 (496)
T ss_dssp ---------------------------------TTSBGGGTSEEGGGCCEEECC----CGGGTCC---CCCEEEECTTSB
T ss_pred ---------------------------------CCCcHHHHhcCCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCC
Confidence 0123555688 4 5899999999999999999999999999999999
Q ss_pred EEEEEeHhhhhhhhc
Q 003889 742 VIGLITRKDLLIEDG 756 (788)
Q Consensus 742 lvGIITr~DLl~~~~ 756 (788)
++|+||++|+++...
T Consensus 194 l~GiIT~~DIl~~~~ 208 (496)
T 4fxs_A 194 LKGMITAKDFHKAES 208 (496)
T ss_dssp CCEEECCC-----CC
T ss_pred EEEeehHhHHHHhhc
Confidence 999999999998754
No 67
>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A*
Probab=99.25 E-value=7.1e-12 Score=143.10 Aligned_cols=121 Identities=17% Similarity=0.236 Sum_probs=102.6
Q ss_pred cchhhhccCCceEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCCcEEEEEEeHHHHHHHHhcccccCCCCCCCCCCCC
Q 003889 584 MTAKEACGAQKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCDTRGG 663 (788)
Q Consensus 584 l~v~diM~~~~vv~l~~~~tv~~a~~~L~~~~~~~fPVVd~~~~~~~~lvGiI~r~dL~~lL~~~~~~~~~~~~~~~~~~ 663 (788)
++.++.|.++ ++++++++++.++.+.|.+++++++||+|+. .+++++|+|+.+||+. ...
T Consensus 113 ~~~~~~m~~d-~v~l~~~~tv~ea~~~m~~~~~s~~pVvd~g--~~~~lvGiVt~rDl~~---~~~-------------- 172 (511)
T 3usb_A 113 KRSESGVISD-PFFLTPEHQVYDAEHLMGKYRISGVPVVNNL--DERKLVGIITNRDMRF---IQD-------------- 172 (511)
T ss_dssp HTSSSCSSSS-CCCBCTTSBHHHHHHHHHHHCCSEEEEESCT--TTCBEEEEEEHHHHTT---CCC--------------
T ss_pred hccccccccC-CEEECCCCCHHHHHHHHHHcCCcEEEEEecC--CCCEEEEEEEehHhhh---hcc--------------
Confidence 3456778888 8999999999999999999999999999852 1479999999999932 000
Q ss_pred CCccccccccccccCCCCCCCccccccCccccccccCcccccCC-CCceecCCCCHHHHHHHHHHcCCCEEEEecCCCeE
Q 003889 664 SKPISHSFSEFVKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNP-SPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRV 742 (788)
Q Consensus 664 ~~~~~~~~~~~~~~~~~~~~~i~di~~~~~~~~~~idl~~~m~~-~p~tV~~~~sl~~a~~lf~~~glr~lpVVd~~g~l 742 (788)
...+++++|++ +++++++++++.+++++|.+++.+.+||||++|++
T Consensus 173 ---------------------------------~~~~V~~vM~~~~~vtv~~~~~l~eal~~m~~~~i~~lpVVDe~g~l 219 (511)
T 3usb_A 173 ---------------------------------YSIKISDVMTKEQLITAPVGTTLSEAEKILQKYKIEKLPLVDNNGVL 219 (511)
T ss_dssp ---------------------------------SSSBHHHHCCCCCCCCEETTCCHHHHHHHHHHHTCSEEEEECTTSBE
T ss_pred ---------------------------------CCCcHHHhcccCCCEEECCCCCHHHHHHHHHHcCCCEEEEEeCCCCE
Confidence 01234555887 89999999999999999999999999999999999
Q ss_pred EEEEeHhhhhhhhcC
Q 003889 743 IGLITRKDLLIEDGE 757 (788)
Q Consensus 743 vGIITr~DLl~~~~~ 757 (788)
+|+||++|+++....
T Consensus 220 ~GiIT~~Dil~~~~~ 234 (511)
T 3usb_A 220 QGLITIKDIEKVIEF 234 (511)
T ss_dssp EEEEEHHHHHHHHHC
T ss_pred eeeccHHHHHHhhhc
Confidence 999999999998765
No 68
>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*
Probab=99.25 E-value=1.7e-14 Score=165.77 Aligned_cols=179 Identities=13% Similarity=0.222 Sum_probs=101.0
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHHHHHhhhCccHHHHHHHHcCCCCCCC--Cchhhh----cccchhhhccCCceEE
Q 003889 524 SLCVIMVEITNNLKFLPLIMLVLLISKAVGDAFSEGLYEEQAHLRGVPLLES--RPKYKM----RQMTAKEACGAQKVVS 597 (788)
Q Consensus 524 s~~vi~~E~Tg~~~~l~pi~~~~~~a~~v~~~~~~~iy~~~l~~kg~p~l~~--~~~~~l----~~l~v~diM~~~~vv~ 597 (788)
+.+.+..|+|+++.+.+|+|.+.+-. .-...+.+...+.++..+++. .++... +-.+++|+|.++ +++
T Consensus 47 ~~v~l~~eLt~~~~~~iP~vsa~md~-----~t~~~la~~ia~~gg~gii~~~~t~e~~~~~v~~v~~~~~im~~~-~~~ 120 (514)
T 1jcn_A 47 DEVDLTSALTRKITLKTPLISSPMDT-----VTEADMAIAMALMGGIGFIHHNCTPEFQANEVRKVKNFEQGFITD-PVV 120 (514)
T ss_dssp GGCBCCEESSSSCEESSCEEECCCTT-----TCSHHHHHHHHHTTCEEEECCSSCHHHHHHHHHHHHTCCTTSCSS-CCC
T ss_pred ceeEEEeeccCCeeEeceEEEEehhh-----hhhhhHHHHHHhcCCeeEEecCCCHHHHHHHHHhhhhhhhccccC-CEE
Confidence 44566779999998887776542211 002334455555555544432 122211 224678999988 999
Q ss_pred ecCcccHHHHHHHHhhCCCCeeEEeeCCCCCCcEEEEEEeHHHHHHHHhcccccCCCCCCCCCCCCCCcccccccccccc
Q 003889 598 LPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCDTRGGSKPISHSFSEFVKP 677 (788)
Q Consensus 598 l~~~~tv~~a~~~L~~~~~~~fPVVd~~~~~~~~lvGiI~r~dL~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 677 (788)
+++++++.++.+.|.+++++.+||+|+.. .+++++|+|+++|+...... .
T Consensus 121 v~~~~tv~ea~~~m~~~~~~~~pVvd~~~-~~~~lvGiVt~~Dl~~~~~~-~---------------------------- 170 (514)
T 1jcn_A 121 LSPSHTVGDVLEAKMRHGFSGIPITETGT-MGSKLVGIVTSRDIDFLAEK-D---------------------------- 170 (514)
T ss_dssp CCC-----------------CEESCC---------CCEECTTTTC-----------------------------------
T ss_pred ECCCCCHHHHHHHHHhcCCCEEEEEeCCC-cCCEEEEEEEHHHHHhhhhc-c----------------------------
Confidence 99999999999999999999999998610 02799999999998442100 0
Q ss_pred CCCCCCCccccccCccccccccCcccccCC--CCceecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHhhhhhhh
Q 003889 678 ASSKGLSIDDIHLSSDDMEMYIDLGPFLNP--SPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIED 755 (788)
Q Consensus 678 ~~~~~~~i~di~~~~~~~~~~idl~~~m~~--~p~tV~~~~sl~~a~~lf~~~glr~lpVVd~~g~lvGIITr~DLl~~~ 755 (788)
...+++++|++ ++.++++++++.+++++|.+.+.+++||||++|+++|+||++|+++..
T Consensus 171 -------------------~~~~v~~vm~~~~~~~tv~~~~~l~ea~~~m~~~~~~~lpVVd~~g~lvGiIt~~Dll~~~ 231 (514)
T 1jcn_A 171 -------------------HTTLLSEVMTPRIELVVAPAGVTLKEANEILQRSKKGKLPIVNDCDELVAIIARTDLKKNR 231 (514)
T ss_dssp -----------------------------CCBCCCCEETTCCSTTTTTHHHHHTCSCCCEESSSSCCC----CCCCSSCC
T ss_pred -------------------CCCCHHHHhCCCCCCeEECCCCCHHHHHHHHHHcCCCcccEECCCCeEEEEEEHHHHHHHh
Confidence 01235556988 899999999999999999999999999999999999999999999876
Q ss_pred cC
Q 003889 756 GE 757 (788)
Q Consensus 756 ~~ 757 (788)
..
T Consensus 232 ~~ 233 (514)
T 1jcn_A 232 DY 233 (514)
T ss_dssp CC
T ss_pred hC
Confidence 54
No 69
>1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel, oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus} SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A* 1mei_A* 1mew_A* 1pvn_A* 1lrt_A*
Probab=99.22 E-value=9.7e-13 Score=150.37 Aligned_cols=124 Identities=16% Similarity=0.173 Sum_probs=5.1
Q ss_pred hcccchhhh-ccCCceEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCC---cEEEEEEeHHHHHHHHhcccccCCCCC
Q 003889 581 MRQMTAKEA-CGAQKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGE---RLVIGLVLRSHLLVLLQSKVDFQHSPL 656 (788)
Q Consensus 581 l~~l~v~di-M~~~~vv~l~~~~tv~~a~~~L~~~~~~~fPVVd~~~~~~---~~lvGiI~r~dL~~lL~~~~~~~~~~~ 656 (788)
++.++..++ |+++ ++++++++++.++++.|.+++++.+||+|+ + ++++|+|+.+|++.. ...
T Consensus 93 v~~V~~~e~gM~~~-~~~v~~~~tv~eal~~m~~~~~s~~pVvd~----~~~~g~lvGiVt~~Dl~~~--~~~------- 158 (503)
T 1me8_A 93 VHAVKNFKAGFVVS-DSNVKPDQTFADVLAISQRTTHNTVAVTDD----GTPHGVLLGLVTQRDYPID--LTQ------- 158 (503)
T ss_dssp HHHHHTTTC-----------------------------------------------------------------------
T ss_pred HhhhhhcccCcccC-CeEECCCCcHHHHHHHHHHcCceEEEEEEC----CCcCCeEEEEEEHHHHHhh--hcc-------
Confidence 344555566 9988 999999999999999999999999999997 5 799999999999642 000
Q ss_pred CCCCCCCCCccccccccccccCCCCCCCccccccCccccccccCcccccCCC--CceecCCCCHHHHHHHHHHcCCCEEE
Q 003889 657 PCDTRGGSKPISHSFSEFVKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPS--PYVVPEDMSLSKVYNLFRQLGLRHIF 734 (788)
Q Consensus 657 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~di~~~~~~~~~~idl~~~m~~~--p~tV~~~~sl~~a~~lf~~~glr~lp 734 (788)
...+++++|+++ ++++++++++.+++++|++++.+.+|
T Consensus 159 ----------------------------------------~~~~V~diM~~~~~~~tv~~~~sl~ea~~~m~~~~i~~lp 198 (503)
T 1me8_A 159 ----------------------------------------TETKVSDMMTPFSKLVTAHQDTKLSEANKIIWEKKLNALP 198 (503)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ----------------------------------------ccCcHHHHhCCCCCCEEEcCCCcHHHHHHHHHHcCCCEEE
Confidence 012345559887 99999999999999999999999999
Q ss_pred EecCCCeEEEEEeHhhhhhhhcCC
Q 003889 735 VVPRASRVIGLITRKDLLIEDGED 758 (788)
Q Consensus 735 VVd~~g~lvGIITr~DLl~~~~~~ 758 (788)
|||++|+++|+||++|+++.....
T Consensus 199 VVDe~g~lvGiIT~~Dil~~~~~~ 222 (503)
T 1me8_A 199 IIDDDQHLRYIVFRKDYDRSQVCH 222 (503)
T ss_dssp -----------------------C
T ss_pred EEcCCCeEEEEEEecHHHHhhhcc
Confidence 999999999999999999987644
No 70
>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1
Probab=99.20 E-value=1.4e-12 Score=149.20 Aligned_cols=120 Identities=21% Similarity=0.377 Sum_probs=7.9
Q ss_pred cchhhhccCCceEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCCcEEEEEEeHHHHHHHHhcccccCCCCCCCCCCCC
Q 003889 584 MTAKEACGAQKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCDTRGG 663 (788)
Q Consensus 584 l~v~diM~~~~vv~l~~~~tv~~a~~~L~~~~~~~fPVVd~~~~~~~~lvGiI~r~dL~~lL~~~~~~~~~~~~~~~~~~ 663 (788)
.+++|+|+++ ++++++++++.++++.|.+++++.+||+|+ +++++|+|+++|++.. ..
T Consensus 95 ~~~~~iM~~~-~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~----~~~lvGivt~~Dl~~~---~~-------------- 152 (494)
T 1vrd_A 95 KKTENGIIYD-PITVTPDMTVKEAIDLMAEYKIGGLPVVDE----EGRLVGLLTNRDVRFE---KN-------------- 152 (494)
T ss_dssp HTC-----------------------------------------------------------------------------
T ss_pred hhHhhcCccC-CeEECCCCCHHHHHHHHHHcCceEEEEEcC----CCEEEEEEEHHHHHhh---cC--------------
Confidence 4578999998 999999999999999999999999999997 6899999999999642 00
Q ss_pred CCccccccccccccCCCCCCCccccccCccccccccCcccccCC--CCceecCCCCHHHHHHHHHHcCCCEEEEecCCCe
Q 003889 664 SKPISHSFSEFVKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNP--SPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASR 741 (788)
Q Consensus 664 ~~~~~~~~~~~~~~~~~~~~~i~di~~~~~~~~~~idl~~~m~~--~p~tV~~~~sl~~a~~lf~~~glr~lpVVd~~g~ 741 (788)
...+++++|++ ++.++++++++.+++++|.+.+++++||||++|+
T Consensus 153 ---------------------------------~~~~v~~im~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVVd~~g~ 199 (494)
T 1vrd_A 153 ---------------------------------LSKKIKDLMTPREKLIVAPPDISLEKAKEILHQHRIEKLPLVSKDNK 199 (494)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ---------------------------------CCCcHHHHhCCCCCCeEECCCCCHHHHHHHHHHcCCcEEEEEcCCCe
Confidence 01234555988 8999999999999999999999999999999999
Q ss_pred EEEEEeHhhhhhhhcCC
Q 003889 742 VIGLITRKDLLIEDGED 758 (788)
Q Consensus 742 lvGIITr~DLl~~~~~~ 758 (788)
++|+||++|+++.....
T Consensus 200 lvGiIt~~Dll~~~~~~ 216 (494)
T 1vrd_A 200 LVGLITIKDIMSVIEHP 216 (494)
T ss_dssp ---------CHHHHTCT
T ss_pred EEEEEEHHHHHhhhccc
Confidence 99999999999987654
No 71
>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa}
Probab=99.17 E-value=2.7e-12 Score=145.98 Aligned_cols=117 Identities=17% Similarity=0.235 Sum_probs=3.3
Q ss_pred cchhhhccCCceEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCCcEEEEEEeHHHHHHHHhcccccCCCCCCCCCCCC
Q 003889 584 MTAKEACGAQKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCDTRGG 663 (788)
Q Consensus 584 l~v~diM~~~~vv~l~~~~tv~~a~~~L~~~~~~~fPVVd~~~~~~~~lvGiI~r~dL~~lL~~~~~~~~~~~~~~~~~~ 663 (788)
.+++++|.++ ++++++++++.++.+.|.+++++.+||+|+ ++++|+|+.+||.... .
T Consensus 88 k~~~~~m~~~-~v~v~~~~tv~ea~~~m~~~~~s~~pVvd~-----g~lvGIVt~rDl~~~~---~-------------- 144 (490)
T 4avf_A 88 KKHETAIVRD-PVTVTPSTKIIELLQMAREYGFSGFPVVEQ-----GELVGIVTGRDLRVKP---N-------------- 144 (490)
T ss_dssp HHCCC---------------------------------------------------------------------------
T ss_pred cccccCcccC-ceEeCCCCcHHHHHHHHHHhCCCEEEEEEC-----CEEEEEEEhHHhhhcc---c--------------
Confidence 4568889988 999999999999999999999999999985 7999999999984210 0
Q ss_pred CCccccccccccccCCCCCCCccccccCccccccccCcccccC-C-CCceecCCCCHHHHHHHHHHcCCCEEEEecCCCe
Q 003889 664 SKPISHSFSEFVKPASSKGLSIDDIHLSSDDMEMYIDLGPFLN-P-SPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASR 741 (788)
Q Consensus 664 ~~~~~~~~~~~~~~~~~~~~~i~di~~~~~~~~~~idl~~~m~-~-~p~tV~~~~sl~~a~~lf~~~glr~lpVVd~~g~ 741 (788)
...+++++|+ + ++.++++++++.+++++|.+++++.+||||++|+
T Consensus 145 ---------------------------------~~~~V~~vMtp~~~~vtv~~~~~l~ea~~~m~~~~i~~lpVVDe~g~ 191 (490)
T 4avf_A 145 ---------------------------------AGDTVAAIMTPKDKLVTAREGTPLEEMKAKLYENRIEKMLVVDENFY 191 (490)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ---------------------------------cCCcHHHHhccCCCCEEECCCCcHHHHHHHHHHcCCCEEEEEcCCCc
Confidence 0123455598 4 6899999999999999999999999999999999
Q ss_pred EEEEEeHhhhhhhhc
Q 003889 742 VIGLITRKDLLIEDG 756 (788)
Q Consensus 742 lvGIITr~DLl~~~~ 756 (788)
++|+||++|+++...
T Consensus 192 lvGiIT~~Dil~~~~ 206 (490)
T 4avf_A 192 LRGLVTFRDIEKAKT 206 (490)
T ss_dssp ---------------
T ss_pred EEEEEehHHhhhhcc
Confidence 999999999999754
No 72
>2qrd_G Protein C1556.08C; AMPK, ADP, ATP-binding, kinase, nucleotide-binding, serine/T protein kinase, transferase, CBS domain; HET: ADP ATP; 2.41A {Schizosaccharomyces pombe} PDB: 2qrc_G* 2qr1_G* 2qre_G* 2oox_G* 2ooy_G*
Probab=99.15 E-value=1.6e-10 Score=125.01 Aligned_cols=128 Identities=6% Similarity=0.142 Sum_probs=101.1
Q ss_pred hhhccCCce--EEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCCc-E----EEEEEeHHHHHHHHhcccccCCCCCCCC
Q 003889 587 KEACGAQKV--VSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGER-L----VIGLVLRSHLLVLLQSKVDFQHSPLPCD 659 (788)
Q Consensus 587 ~diM~~~~v--v~l~~~~tv~~a~~~L~~~~~~~fPVVd~~~~~~~-~----lvGiI~r~dL~~lL~~~~~~~~~~~~~~ 659 (788)
+++|.++ . +++++++++.++++.|.+++++.+||+|+ ++ + ++|+|+.+|+.+.+.... ... .
T Consensus 110 ~~im~~~-~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~----~~~~~~~~~~Givt~~dl~~~~~~~~-~~~-~---- 178 (334)
T 2qrd_G 110 RKIGAIP-PETIYVHPMHSLMDACLAMSKSRARRIPLIDV----DGETGSEMIVSVLTQYRILKFISMNC-KET-A---- 178 (334)
T ss_dssp HHHTCSC-SSCCCBCTTSBHHHHHHHHHHSCCSEEEEEEE----ETTTTEEEEEEEEEHHHHHHHHHHHC-GGG-G----
T ss_pred HhhccCC-CceeeeCCCCcHHHHHHHHHHCCceEEEEEeC----CCCcCccceEEEeeHHHHHHHHHhhc-cch-h----
Confidence 4567776 6 89999999999999999999999999987 33 3 999999999988765321 000 0
Q ss_pred CCCCCCccccccccccccCCCCCCCccccccCccccccccCcccccCCCCceecCCCCHHHHHHHHHHcCCCEEEEecCC
Q 003889 660 TRGGSKPISHSFSEFVKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRA 739 (788)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~i~di~~~~~~~~~~idl~~~m~~~p~tV~~~~sl~~a~~lf~~~glr~lpVVd~~ 739 (788)
....++.+ +..+|++++.++++++++.++.++|.+.+.+++||+|++
T Consensus 179 --------------------~~~~~v~~-------------l~~~m~~~~~~v~~~~~~~~~~~~m~~~~~~~~~Vvd~~ 225 (334)
T 2qrd_G 179 --------------------MLRVPLNQ-------------MTIGTWSNLATASMETKVYDVIKMLAEKNISAVPIVNSE 225 (334)
T ss_dssp --------------------GCCCBGGG-------------SSCSBCSSCCCBCTTSBHHHHHHHHHHHTCSEEEEECTT
T ss_pred --------------------hhhCcHHH-------------hCCcccCCceEECCCCcHHHHHHHHHHcCCcEEEEEcCC
Confidence 00001222 122488999999999999999999999999999999988
Q ss_pred CeEEEEEeHhhhhhhhcCC
Q 003889 740 SRVIGLITRKDLLIEDGED 758 (788)
Q Consensus 740 g~lvGIITr~DLl~~~~~~ 758 (788)
|+++|+||++|+++...+.
T Consensus 226 ~~~~Giit~~dl~~~~~~~ 244 (334)
T 2qrd_G 226 GTLLNVYESVDVMHLIQDG 244 (334)
T ss_dssp CBEEEEEETHHHHHHHTTS
T ss_pred CcEEEEEEHHHHHHHhhcc
Confidence 9999999999999976543
No 73
>4af0_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase, GTP biosynthesis, drug resistance; HET: MOA IMP; 2.20A {Cryptococcus neoformans} PDB: 4af0_B*
Probab=99.08 E-value=1.4e-11 Score=136.92 Aligned_cols=116 Identities=16% Similarity=0.250 Sum_probs=0.4
Q ss_pred hhccCCceEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCCcEEEEEEeHHHHHHHHhcccccCCCCCCCCCCCCCCcc
Q 003889 588 EACGAQKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCDTRGGSKPI 667 (788)
Q Consensus 588 diM~~~~vv~l~~~~tv~~a~~~L~~~~~~~fPVVd~~~~~~~~lvGiI~r~dL~~lL~~~~~~~~~~~~~~~~~~~~~~ 667 (788)
+.|..+ ++++.++.|+.|+.+++++++++++||+|+.. .+++|+|+|+.+|+... +
T Consensus 142 ~g~i~d-Pvtl~P~~Tv~da~~l~~~~~isgvpVvd~g~-~~~kLvGIvT~RD~rf~--d-------------------- 197 (556)
T 4af0_A 142 NGFITD-PLCLGPDATVGDVLEIKAKFGFCGVPITETGE-PDSKLLGIVTGRDVQFQ--D-------------------- 197 (556)
T ss_dssp C-------------------------------------------------------------------------------
T ss_pred cCccCC-CeEcCCCCCHHHHHHHHHHhCCCccccccccC-cCCEEEEEEeccccccc--c--------------------
Confidence 446677 89999999999999999999999999998621 14799999999998321 0
Q ss_pred ccccccccccCCCCCCCccccccCccccccccCcccccCCCCceecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEe
Q 003889 668 SHSFSEFVKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLIT 747 (788)
Q Consensus 668 ~~~~~~~~~~~~~~~~~i~di~~~~~~~~~~idl~~~m~~~p~tV~~~~sl~~a~~lf~~~glr~lpVVd~~g~lvGIIT 747 (788)
....++++|+++++|+++++++++|.++|.++++..+||||++++++|+||
T Consensus 198 -----------------------------~~~~V~evMT~~lvt~~~~~~leeA~~iL~~~kieklpVVd~~g~LvGlIT 248 (556)
T 4af0_A 198 -----------------------------AETPIKSVMTTEVVTGSSPITLEKANSLLRETKKGKLPIVDSNGHLVSLVA 248 (556)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred -----------------------------cceEhhhhcccceEEecCCCCHHHHHHHHHHccccceeEEccCCcEEEEEE
Confidence 012345559999999999999999999999999999999999999999999
Q ss_pred Hhhhhhhhc
Q 003889 748 RKDLLIEDG 756 (788)
Q Consensus 748 r~DLl~~~~ 756 (788)
++|+.+...
T Consensus 249 ~kDi~k~~~ 257 (556)
T 4af0_A 249 RSDLLKNQN 257 (556)
T ss_dssp ---------
T ss_pred echhhhhhh
Confidence 999998654
No 74
>2cu0_A Inosine-5'-monophosphate dehydrogenase; structural genomics, pyrococcus horikoshii OT3, riken structural genomics/PROT initiative, RSGI; HET: XMP; 2.10A {Pyrococcus horikoshii} SCOP: c.1.5.1
Probab=98.97 E-value=5.4e-11 Score=135.59 Aligned_cols=114 Identities=17% Similarity=0.313 Sum_probs=2.2
Q ss_pred chhhhccCCceEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCCcEEEEEEeHHHHHHHHhcccccCCCCCCCCCCCCC
Q 003889 585 TAKEACGAQKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCDTRGGS 664 (788)
Q Consensus 585 ~v~diM~~~~vv~l~~~~tv~~a~~~L~~~~~~~fPVVd~~~~~~~~lvGiI~r~dL~~lL~~~~~~~~~~~~~~~~~~~ 664 (788)
+.+|+|..+ ++++++++++.++.+.|++++++.+||+|+ ++++|+|+.+||+. + .
T Consensus 94 ~~~~~m~~~-~~~v~~~~tv~ea~~~~~~~~~~~~pVvd~-----~~lvGivt~~Dl~~---~-~--------------- 148 (486)
T 2cu0_A 94 RAERLIVED-VITIAPDETVDFALFLMEKHGIDGLPVVED-----EKVVGIITKKDIAA---R-E--------------- 148 (486)
T ss_dssp TCC-----------------------------------------------------------------------------
T ss_pred chhhccccC-ceEECCCCCHHHHHHHHHHcCCcEEEEEEC-----CEEEEEEEHHHhcc---C-C---------------
Confidence 457789988 999999999999999999999999999986 78999999999853 1 1
Q ss_pred CccccccccccccCCCCCCCccccccCccccccccCcccccCCCCceecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEE
Q 003889 665 KPISHSFSEFVKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIG 744 (788)
Q Consensus 665 ~~~~~~~~~~~~~~~~~~~~i~di~~~~~~~~~~idl~~~m~~~p~tV~~~~sl~~a~~lf~~~glr~lpVVd~~g~lvG 744 (788)
..+++++|++++.++++++++.+++++|++++.+.+||||++|+++|
T Consensus 149 ---------------------------------~~~v~~im~~~~~~v~~~~~l~eal~~m~~~~~~~lpVVde~g~lvG 195 (486)
T 2cu0_A 149 ---------------------------------GKLVKELMTKEVITVPESIEVEEALKIMIENRIDRLPVVDERGKLVG 195 (486)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ---------------------------------CCCHHHHccCCCeEECCcCcHHHHHHHHHHcCCCEEEEEecCCeEEE
Confidence 12344559888999999999999999999999999999999999999
Q ss_pred EEeHhhhhhhhc
Q 003889 745 LITRKDLLIEDG 756 (788)
Q Consensus 745 IITr~DLl~~~~ 756 (788)
+||++|+++...
T Consensus 196 iiT~~Dil~~~~ 207 (486)
T 2cu0_A 196 LITMSDLVARKK 207 (486)
T ss_dssp -----------C
T ss_pred EEEHHHHHHhhh
Confidence 999999999865
No 75
>3org_A CMCLC; transporter, transport protein; 3.50A {Cyanidioschyzon merolae}
Probab=98.77 E-value=4.1e-08 Score=115.30 Aligned_cols=180 Identities=17% Similarity=0.116 Sum_probs=117.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhhhccccccCCC--CHHHHHH
Q 003889 78 FALLIGIGTGLAAVFINISVENFAGWKFSLTFSIIQKSYFAGFLVYILINLILVFSSVYIITKFAPAAAGS--GIPEIKG 155 (788)
Q Consensus 78 ~~~liGv~~Gl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~a~Gs--Gipev~~ 155 (788)
+.+++|+++|+++.+|......+.++++ .++.. ..+++ +.. +.+++.+.+ +.|...|. |...++.
T Consensus 237 ~~~~lGi~~Gl~g~~f~~~~~~~~~~~~---~~~~~---~~~~~-~~~---~~~~~~~~l---~~p~~~g~~~~~~~i~~ 303 (632)
T 3org_A 237 LYAILGALMGVLGALFIRCVRSIYELRM---RHYPG---TNRYF-LVG---VVALFASAL---QYPFRLFALDPRATIND 303 (632)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HSSTT---CCTHH-HHH---HHHHHHHHH---TTTC------CHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---Hhhcc---hhHHH-HHH---HHHHHHHHH---HHHHHhcCCcHHHHHHH
Confidence 5689999999999999988777655421 11111 11121 221 222222222 34665444 3344656
Q ss_pred HHcCccc--ccc----hhhHHHHHHHHHHHHHhccCCcccccchHHHHHHHHHHHhhccCccccccccccccccCChhhh
Q 003889 156 YLNGVDI--HGI----LLFRTLIGKIFGSIGSVGGGLALGKEGPLVHTGACIASLLGQGGSTKYHLRYRWLQVFRSDRDR 229 (788)
Q Consensus 156 ~l~g~~~--~~~----l~~~~l~~K~~~~~lsv~sG~svG~EGP~vhiGa~igs~l~~~~~~~~~l~~~~~~~f~~~~~~ 229 (788)
.+++... .+. .-.-.++.|++.+++|.++|.+.|...|+.-+||++|..++... + ..|....+.
T Consensus 304 l~~~~~~~~~~~~~~~~l~~~~~~k~~~t~~s~g~g~pGGif~P~l~iGA~~G~~~g~~~----~------~~~p~~~~p 373 (632)
T 3org_A 304 LFKAVPLYQTDHFGWTELILMPIIKFILVALSIGLPLPAGVFVPSFLIGAGFGRLYGELM----R------VVFGNAIVP 373 (632)
T ss_dssp HHSCC----------CCSSHHHHHHHHHHHHHTTSSSBCBCHHHHHHHHHHHHHHHHHHH----H------HHHCTTSCH
T ss_pred HHcCCccccccchhHHHHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHHHHHHHHHHHH----H------HhCCcccch
Confidence 5554211 001 11234789999999999999999999999999999999998631 1 011112344
Q ss_pred hhHHHHhhhhhhhhhhcCCccchhhhhhhhchhhhhhhHHHHHHHHHHHHHHHHH
Q 003889 230 RDLVTCGCAAGVAAAFRAPVGGVLFALEEVTSWWRSQLMWRVFFTSAIVAVVVRS 284 (788)
Q Consensus 230 r~li~~GaaAGvaaaF~APigGvlFalE~~~~~~~~~~~~~~~~~~~va~~v~~~ 284 (788)
..++.+||||-+|++-+||++++ +++|++.+ ...+.+.++++++|..+.+.
T Consensus 374 ~~~a~vGmaa~~~~v~~ap~t~v-i~~E~tg~---~~~~lpl~ia~~~a~~v~~~ 424 (632)
T 3org_A 374 GSYAVVGAAAFTAGVTRALSCAV-IIFEVTGQ---IRHLVPVLISVLLAVIVGNA 424 (632)
T ss_dssp HHHHHHHHHHHHHHHSCCTTHHH-HHHHHTCC---CSCSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHhCC---hhHHHHHHHHHHHHHHHHHH
Confidence 67899999999999999999987 79999986 34567778888888877764
No 76
>3ghd_A A cystathionine beta-synthase domain protein FUSE ribbon-like domain; PF1953,APC40009,cystathionine beta-synthase domain protein; 1.81A {Pyrococcus furiosus}
Probab=98.50 E-value=2.6e-07 Score=75.84 Aligned_cols=47 Identities=23% Similarity=0.299 Sum_probs=43.2
Q ss_pred ceEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCCcEEEEEEeHHHHHHHH
Q 003889 594 KVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLL 645 (788)
Q Consensus 594 ~vv~l~~~~tv~~a~~~L~~~~~~~fPVVd~~~~~~~~lvGiI~r~dL~~lL 645 (788)
|++++++++++.|+.+.|.+++++++||+|+ ++++|++|.+|+.+.+
T Consensus 1 k~vtv~p~~tv~ea~~~M~~~~i~~~~V~d~-----~~lvGIvT~~Di~~~~ 47 (70)
T 3ghd_A 1 KAIVVQPKDTVDRVAKILSRNKAGSAVVMEG-----DEILGVVTERDILDKV 47 (70)
T ss_dssp CEEEECTTCBHHHHHHHHHHTTCSEEEEEET-----TEEEEEEEHHHHHHHT
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCEEEEEEC-----CEEEEEEEHHHHHHHH
Confidence 4789999999999999999999999999986 7999999999997654
No 77
>4esy_A CBS domain containing membrane protein; structural genomics, PSI-biology; 2.01A {Sphaerobacter thermophilus}
Probab=98.49 E-value=1.6e-07 Score=91.16 Aligned_cols=59 Identities=22% Similarity=0.271 Sum_probs=54.4
Q ss_pred cCcccccCCCCceecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHhhhhhhhcC
Q 003889 699 IDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIEDGE 757 (788)
Q Consensus 699 idl~~~m~~~p~tV~~~~sl~~a~~lf~~~glr~lpVVd~~g~lvGIITr~DLl~~~~~ 757 (788)
++++++|++++++|++++++.+|+++|.+++++++||+|++|+++|+||.+|+++....
T Consensus 18 ~~V~diM~~~v~~v~~~~tl~~a~~~m~~~~~~~~pVvd~~g~lvGiit~~Dll~~~~~ 76 (170)
T 4esy_A 18 VPIRDILTSPVVTVREDDTLDAVAKTMLEHQIGCAPVVDQNGHLVGIITESDFLRGSIP 76 (170)
T ss_dssp SBGGGGCCSCCCCEETTSBHHHHHHHHHHTTCSEEEEECTTSCEEEEEEGGGGGGGTCC
T ss_pred CCHHHhcCCCCcEECCcCcHHHHHHHHHHcCCeEEEEEcCCccEEEEEEHHHHHHHHhh
Confidence 45677799999999999999999999999999999999999999999999999987543
No 78
>3ghd_A A cystathionine beta-synthase domain protein FUSE ribbon-like domain; PF1953,APC40009,cystathionine beta-synthase domain protein; 1.81A {Pyrococcus furiosus}
Probab=98.40 E-value=5.6e-07 Score=73.85 Aligned_cols=48 Identities=17% Similarity=0.284 Sum_probs=44.0
Q ss_pred CceecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHhhhhhhhcC
Q 003889 709 PYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIEDGE 757 (788)
Q Consensus 709 p~tV~~~~sl~~a~~lf~~~glr~lpVVd~~g~lvGIITr~DLl~~~~~ 757 (788)
+++|++++++.+|.++|.+++++++||+|+ |+++||||.+|+++....
T Consensus 2 ~vtv~p~~tv~ea~~~M~~~~i~~~~V~d~-~~lvGIvT~~Di~~~~~~ 49 (70)
T 3ghd_A 2 AIVVQPKDTVDRVAKILSRNKAGSAVVMEG-DEILGVVTERDILDKVVA 49 (70)
T ss_dssp EEEECTTCBHHHHHHHHHHTTCSEEEEEET-TEEEEEEEHHHHHHHTTT
T ss_pred CEEECCCCcHHHHHHHHHHcCCCEEEEEEC-CEEEEEEEHHHHHHHHHh
Confidence 478999999999999999999999999986 999999999999876543
No 79
>3fio_A A cystathionine beta-synthase domain protein fused to A Zn-ribbon-like domain; PF1953,APC40009,cystathionine beta-synthase domain protein; 1.81A {Pyrococcus furiosus} PDB: 3ghd_A
Probab=98.29 E-value=1.4e-06 Score=70.81 Aligned_cols=49 Identities=16% Similarity=0.282 Sum_probs=45.3
Q ss_pred CceecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHhhhhhhhcCC
Q 003889 709 PYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIEDGED 758 (788)
Q Consensus 709 p~tV~~~~sl~~a~~lf~~~glr~lpVVd~~g~lvGIITr~DLl~~~~~~ 758 (788)
+.++++++++.++.++|++.+.+++||+|+ |+++|+||++|+++.....
T Consensus 2 ~~~v~~~~~~~~a~~~m~~~~~~~~pV~d~-~~l~Givt~~dl~~~~~~~ 50 (70)
T 3fio_A 2 AIVVQPKDTVDRVAKILSRNKAGSAVVMEG-DEILGVVTERDILDKVVAK 50 (70)
T ss_dssp EEEECTTCBHHHHHHHHHHTTCSEEEEEET-TEEEEEEEHHHHHHHTTTT
T ss_pred CeEECCCCcHHHHHHHHHHcCCCEEEEEEC-CEEEEEEEHHHHHHHHHHc
Confidence 568999999999999999999999999998 9999999999999987543
No 80
>1vr9_A CBS domain protein/ACT domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.70A {Thermotoga maritima} SCOP: d.37.1.1
Probab=98.27 E-value=8.9e-07 Score=89.34 Aligned_cols=60 Identities=13% Similarity=0.125 Sum_probs=54.6
Q ss_pred ccchhhhccCCceEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCCcEEEEEEeHHHHHHHHhc
Q 003889 583 QMTAKEACGAQKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQS 647 (788)
Q Consensus 583 ~l~v~diM~~~~vv~l~~~~tv~~a~~~L~~~~~~~fPVVd~~~~~~~~lvGiI~r~dL~~lL~~ 647 (788)
+.+++|+|+++ ++++++++++.++.+.|.+++++.+||+|+ +++++|+|+++|+++.+..
T Consensus 71 ~~~v~~im~~~-~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~----~g~lvGiit~~Dil~~~~~ 130 (213)
T 1vr9_A 71 DSSVFNKVSLP-DFFVHEEDNITHALLLFLEHQEPYLPVVDE----EMRLKGAVSLHDFLEALIE 130 (213)
T ss_dssp TSBSGGGCBCT-TCCEETTSBHHHHHHHHHHCCCSEEEEECT----TCBEEEEEEHHHHHHHHHH
T ss_pred CCcHHHHccCC-CEEECCCCcHHHHHHHHHHhCCCEEEEEcC----CCEEEEEEEHHHHHHHHHH
Confidence 34699999998 999999999999999999999999999998 7899999999999887654
No 81
>3l2b_A Probable manganase-dependent inorganic pyrophosphatase; family II, CBS domain, bateman domain, AP4A, diadenosine polyphosphate, DRTGG; HET: B4P; 2.27A {Clostridium perfringens} PDB: 3l31_A*
Probab=98.25 E-value=1.4e-06 Score=89.67 Aligned_cols=61 Identities=13% Similarity=0.223 Sum_probs=55.4
Q ss_pred cCcccccCCCCceecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHhhhhhhhcCCC
Q 003889 699 IDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIEDGEDS 759 (788)
Q Consensus 699 idl~~~m~~~p~tV~~~~sl~~a~~lf~~~glr~lpVVd~~g~lvGIITr~DLl~~~~~~~ 759 (788)
..++++|++++.++++++++.+|+++|.+++++++||+|++|+++|+||.+|+++.+....
T Consensus 7 ~~v~~im~~~~~~v~~~~~~~~a~~~m~~~~~~~lpVvd~~~~l~Giit~~di~~~~~~~~ 67 (245)
T 3l2b_A 7 LKVEDLEMDKIAPLAPEVSLKMAWNIMRDKNLKSIPVADGNNHLLGMLSTSNITATYMDIW 67 (245)
T ss_dssp CBGGGSCCBCCCCBCTTCBHHHHHHHHHHTTCSEEEEECTTCBEEEEEEHHHHHHHHHCCC
T ss_pred CcHHHhcCCCCcEECCCCcHHHHHHHHHHcCCCEEEEEcCCCEEEEEEEHHHHHHHHHHhh
Confidence 3466679999999999999999999999999999999999899999999999999876543
No 82
>3k2v_A Putative D-arabinose 5-phosphate isomerase; KPSF-like protein, CBS domain, structural genomics, PSI-2, P structure initiative; HET: MSE CMK; 1.95A {Klebsiella pneumoniae subsp} PDB: 3fna_A*
Probab=98.21 E-value=2e-06 Score=81.18 Aligned_cols=60 Identities=13% Similarity=0.099 Sum_probs=54.6
Q ss_pred cCcccccCC--CCceecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHhhhhhhhcCC
Q 003889 699 IDLGPFLNP--SPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIEDGED 758 (788)
Q Consensus 699 idl~~~m~~--~p~tV~~~~sl~~a~~lf~~~glr~lpVVd~~g~lvGIITr~DLl~~~~~~ 758 (788)
..++++|++ ++.++++++++.++.++|.+.+.+++||+|++|+++|+||++|+++...+.
T Consensus 28 ~~v~dim~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~ 89 (149)
T 3k2v_A 28 LRVNDIMHTGDEIPHVGLQATLRDALLEITRKNLGMTAICDDDMNIIGIFTDGDLRRVFDTG 89 (149)
T ss_dssp SBGGGTSBCGGGSCEECTTCBHHHHHHHHHHHTSSEEEEECTTCBEEEEEEHHHHHHHHCSS
T ss_pred cCHHHHhcCCCCCeEECCCCcHHHHHHHHHhCCCcEEEEECCCCcEEEEecHHHHHHHHhcC
Confidence 356777998 899999999999999999999999999999889999999999999877643
No 83
>3gby_A Uncharacterized protein CT1051; CBS domain, structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Chlorobium tepidum tls}
Probab=98.19 E-value=2e-06 Score=78.91 Aligned_cols=59 Identities=14% Similarity=0.054 Sum_probs=53.4
Q ss_pred cCcccccCCCCceecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHhhhhhhhcCC
Q 003889 699 IDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIEDGED 758 (788)
Q Consensus 699 idl~~~m~~~p~tV~~~~sl~~a~~lf~~~glr~lpVVd~~g~lvGIITr~DLl~~~~~~ 758 (788)
+.++++|++++.++++++++.++.++|++.+.+++||+|+ |+++|+||++|+.+...+.
T Consensus 5 ~~v~~~m~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~-~~~~Givt~~dl~~~~~~~ 63 (128)
T 3gby_A 5 VTFSYLAETDYPVFTLGGSTADAARRLAASGCACAPVLDG-ERYLGMVHLSRLLEGRKGW 63 (128)
T ss_dssp CBGGGGCBCCSCCEETTSBHHHHHHHHHHHTCSEEEEEET-TEEEEEEEHHHHHTTCSSS
T ss_pred eEHHHhhcCCcceECCCCCHHHHHHHHHHCCCcEEEEEEC-CEEEEEEEHHHHHHHHhhC
Confidence 4456669999999999999999999999999999999999 9999999999999876543
No 84
>2yzi_A Hypothetical protein PH0107; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; 2.25A {Pyrococcus horikoshii} SCOP: d.37.1.1
Probab=98.16 E-value=4.9e-06 Score=77.12 Aligned_cols=56 Identities=14% Similarity=0.319 Sum_probs=51.0
Q ss_pred cCcccccCCCCceecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHhhhhhh
Q 003889 699 IDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIE 754 (788)
Q Consensus 699 idl~~~m~~~p~tV~~~~sl~~a~~lf~~~glr~lpVVd~~g~lvGIITr~DLl~~ 754 (788)
..++++|.+++.++++++++.++.++|.+.+.+++||+|++|+++|+||++|+++.
T Consensus 7 ~~v~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~~ 62 (138)
T 2yzi_A 7 APIKVYMTKKLLGVKPSTSVQEASRLMMEFDVGSLVVINDDGNVVGFFTKSDIIRR 62 (138)
T ss_dssp SBGGGTCBCCCCEECTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHH
T ss_pred hhHHHHhcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHH
Confidence 34566699999999999999999999999999999999988999999999999853
No 85
>2o16_A Acetoin utilization protein ACUB, putative; structural genomics, unknown function, PSI-2, protein struct initiative; 1.90A {Vibrio cholerae} SCOP: d.37.1.1
Probab=98.15 E-value=2.3e-06 Score=81.94 Aligned_cols=58 Identities=21% Similarity=0.483 Sum_probs=52.9
Q ss_pred cCcccccCCCCceecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHhhhhhhhc
Q 003889 699 IDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIEDG 756 (788)
Q Consensus 699 idl~~~m~~~p~tV~~~~sl~~a~~lf~~~glr~lpVVd~~g~lvGIITr~DLl~~~~ 756 (788)
..++++|++++.++++++++.++.++|++.+.+++||+|++|+++|+||++|+++...
T Consensus 5 ~~v~dim~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVvd~~~~lvGivt~~dl~~~~~ 62 (160)
T 2o16_A 5 IKVEDMMTRHPHTLLRTHTLNDAKHLMEALDIRHVPIVDANKKLLGIVSQRDLLAAQE 62 (160)
T ss_dssp CBGGGTSEESCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHHH
T ss_pred CcHHHHhcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHH
Confidence 4556679999999999999999999999999999999998899999999999998754
No 86
>3fio_A A cystathionine beta-synthase domain protein fused to A Zn-ribbon-like domain; PF1953,APC40009,cystathionine beta-synthase domain protein; 1.81A {Pyrococcus furiosus} PDB: 3ghd_A
Probab=98.14 E-value=6.6e-06 Score=66.78 Aligned_cols=47 Identities=21% Similarity=0.265 Sum_probs=43.3
Q ss_pred eEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCCcEEEEEEeHHHHHHHHh
Q 003889 595 VVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQ 646 (788)
Q Consensus 595 vv~l~~~~tv~~a~~~L~~~~~~~fPVVd~~~~~~~~lvGiI~r~dL~~lL~ 646 (788)
++++++++++.++.+.|.+++++.+||+|+ ++++|+|+++|+.+.+.
T Consensus 2 ~~~v~~~~~~~~a~~~m~~~~~~~~pV~d~-----~~l~Givt~~dl~~~~~ 48 (70)
T 3fio_A 2 AIVVQPKDTVDRVAKILSRNKAGSAVVMEG-----DEILGVVTERDILDKVV 48 (70)
T ss_dssp EEEECTTCBHHHHHHHHHHTTCSEEEEEET-----TEEEEEEEHHHHHHHTT
T ss_pred CeEECCCCcHHHHHHHHHHcCCCEEEEEEC-----CEEEEEEEHHHHHHHHH
Confidence 688999999999999999999999999986 79999999999988653
No 87
>3kpb_A Uncharacterized protein MJ0100; CBS domain, S-adenosylmethionine, conformational change, unknown function; HET: SAM; 1.60A {Methanocaldococcus jannaschii} SCOP: d.37.1.0 PDB: 3kpd_A* 3kpc_A*
Probab=98.13 E-value=1.8e-06 Score=78.11 Aligned_cols=57 Identities=16% Similarity=0.344 Sum_probs=52.2
Q ss_pred cccccCCCCceecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHhhhhhhhcC
Q 003889 701 LGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIEDGE 757 (788)
Q Consensus 701 l~~~m~~~p~tV~~~~sl~~a~~lf~~~glr~lpVVd~~g~lvGIITr~DLl~~~~~ 757 (788)
++++|++++.++++++++.++.++|.+.+.+++||+|++|+++|+||++|+.+...+
T Consensus 3 v~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~G~vt~~dl~~~~~~ 59 (122)
T 3kpb_A 3 VKDILSKPPITAHSNISIMEAAKILIKHNINHLPIVDEHGKLVGIITSWDIAKALAQ 59 (122)
T ss_dssp HHHHCCSCCCCEETTSBHHHHHHHHHHHTCSCEEEECTTSBEEEEECHHHHHHHHHT
T ss_pred hHHhhCCCCEEeCCCCcHHHHHHHHHHcCCCeEEEECCCCCEEEEEEHHHHHHHHHh
Confidence 455699999999999999999999999999999999988999999999999987654
No 88
>2rih_A Conserved protein with 2 CBS domains; bateman domain, AMP binding protein, ligand-BIND protein; 2.10A {Pyrobaculum aerophilum} SCOP: d.37.1.1 PDB: 2rif_A
Probab=98.13 E-value=4.3e-06 Score=77.97 Aligned_cols=59 Identities=17% Similarity=0.338 Sum_probs=53.6
Q ss_pred cCcccccCCCCceecCCCCHHHHHHHHHHcCCCEEEEecCCC--eEEEEEeHhhhhhhhcC
Q 003889 699 IDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRAS--RVIGLITRKDLLIEDGE 757 (788)
Q Consensus 699 idl~~~m~~~p~tV~~~~sl~~a~~lf~~~glr~lpVVd~~g--~lvGIITr~DLl~~~~~ 757 (788)
+.++++|.+++.++++++++.++.++|.+.+.+++||+|+++ +++|+||++|+++...+
T Consensus 5 ~~v~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~~~Givt~~dl~~~~~~ 65 (141)
T 2rih_A 5 IRTSELLKRPPVSLPETATIREVATELAKNRVGLAVLTARDNPKRPVAVVSERDILRAVAQ 65 (141)
T ss_dssp CBGGGGCCSCCEEEETTCBHHHHHHHHHHHTCSEEEEEETTEEEEEEEEEEHHHHHHHHHT
T ss_pred eEHHHHhcCCCeEeCCCCcHHHHHHHHHHcCCCEEEEEcCCCcceeEEEEEHHHHHHHHhc
Confidence 456677999999999999999999999999999999999877 99999999999987653
No 89
>3lv9_A Putative transporter; CBS domain, PSI, MCSG, structural genomics, protein structur initiative, midwest center for structural genomics; 2.40A {Clostridium difficile 630}
Probab=98.11 E-value=3.4e-06 Score=79.41 Aligned_cols=58 Identities=16% Similarity=0.287 Sum_probs=52.9
Q ss_pred cCcccccCC--CCceecCCCCHHHHHHHHHHcCCCEEEEecCC-CeEEEEEeHhhhhhhhc
Q 003889 699 IDLGPFLNP--SPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRA-SRVIGLITRKDLLIEDG 756 (788)
Q Consensus 699 idl~~~m~~--~p~tV~~~~sl~~a~~lf~~~glr~lpVVd~~-g~lvGIITr~DLl~~~~ 756 (788)
..++++|.+ ++.++++++++.++.++|++.+.+++||+|++ |+++|+||++|+++...
T Consensus 23 ~~v~diM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~lvGivt~~dl~~~~~ 83 (148)
T 3lv9_A 23 KKIREIMVPRTDMVCIYESDSEEKILAILKEEGVTRYPVCRKNKDDILGFVHIRDLYNQKI 83 (148)
T ss_dssp CBGGGTSEETTTCCCEETTCCHHHHHHHHHHSCCSEEEEESSSTTSEEEEEEHHHHHHHHH
T ss_pred CCHHHccccHHHeEEECCCCCHHHHHHHHHHCCCCEEEEEcCCCCcEEEEEEHHHHHHHHh
Confidence 456677988 89999999999999999999999999999998 89999999999998754
No 90
>3nqr_A Magnesium and cobalt efflux protein CORC; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: AMP; 2.00A {Salmonella typhimurium}
Probab=98.09 E-value=2.7e-06 Score=77.94 Aligned_cols=57 Identities=14% Similarity=0.229 Sum_probs=51.0
Q ss_pred cccccCCC--CceecCCCCHHHHHHHHHHcCCCEEEEecCC-CeEEEEEeHhhhhhhhcC
Q 003889 701 LGPFLNPS--PYVVPEDMSLSKVYNLFRQLGLRHIFVVPRA-SRVIGLITRKDLLIEDGE 757 (788)
Q Consensus 701 l~~~m~~~--p~tV~~~~sl~~a~~lf~~~glr~lpVVd~~-g~lvGIITr~DLl~~~~~ 757 (788)
++++|.+. +.++++++++.++.++|++.+.+++||+|++ |+++|+||.+|+++...+
T Consensus 5 v~diM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~~vGivt~~dl~~~~~~ 64 (127)
T 3nqr_A 5 VRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISEDKDHIEGILMAKDLLPFMRS 64 (127)
T ss_dssp HHHHSEEGGGCCCEETTCCHHHHHHHHHHHCCSEEEEESSSTTCEEEEEEGGGGGGGGST
T ss_pred HHHhcccHHHeEEEcCCCCHHHHHHHHHhCCCCEEEEEcCCCCcEEEEEEHHHHHHHHhc
Confidence 45568854 8999999999999999999999999999998 899999999999987653
No 91
>3fv6_A YQZB protein; CBS domain dimer, metabolism regulator, central glycolytic G regulator, transcription; 1.95A {Bacillus subtilis} PDB: 3fwr_A* 3fws_A*
Probab=98.09 E-value=5.7e-06 Score=79.02 Aligned_cols=57 Identities=26% Similarity=0.419 Sum_probs=51.5
Q ss_pred cCcccccCCCCceecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHhhhhhhhc
Q 003889 699 IDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIEDG 756 (788)
Q Consensus 699 idl~~~m~~~p~tV~~~~sl~~a~~lf~~~glr~lpVVd~~g~lvGIITr~DLl~~~~ 756 (788)
+.++++|++ ++++++++++.+|.++|.+.+.+++||+|++|+++|+||.+|+++...
T Consensus 17 ~~v~~im~~-~~~v~~~~~~~~a~~~m~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~ 73 (159)
T 3fv6_A 17 LQVKDFQSI-PVVIHENVSVYDAICTMFLEDVGTLFVVDRDAVLVGVLSRKDLLRASI 73 (159)
T ss_dssp CBGGGSCBC-CCEEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHT
T ss_pred CCHHHHcCC-CEEECCCCcHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHhh
Confidence 456667987 679999999999999999999999999998899999999999999764
No 92
>1pbj_A Hypothetical protein; structural genomics, domain, PSI, protein structure initiative; 1.40A {Methanothermobacter thermautotrophicusdelta H} SCOP: d.37.1.1
Probab=98.08 E-value=3.3e-06 Score=76.70 Aligned_cols=56 Identities=18% Similarity=0.157 Sum_probs=50.9
Q ss_pred cccccCCCCceecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHhhhhhhhcC
Q 003889 701 LGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIEDGE 757 (788)
Q Consensus 701 l~~~m~~~p~tV~~~~sl~~a~~lf~~~glr~lpVVd~~g~lvGIITr~DLl~~~~~ 757 (788)
++++|++++.++++++++.++.++|.+.+.+++||+| +|+++|+||++|+++...+
T Consensus 3 v~~~m~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd-~~~~~G~it~~dl~~~~~~ 58 (125)
T 1pbj_A 3 VEDVMVTDVDTIDITASLEDVLRNYVENAKGSSVVVK-EGVRVGIVTTWDVLEAIAE 58 (125)
T ss_dssp HHHHCBCSCCEEETTCBHHHHHHHHHHHCCCEEEEEE-TTEEEEEEEHHHHHHHHHH
T ss_pred HHHhcCCCceEECCCCcHHHHHHHHHHcCCCEEEEEe-CCeeEEEEeHHHHHHHHhc
Confidence 4556999999999999999999999999999999999 7999999999999976543
No 93
>2p9m_A Hypothetical protein MJ0922; structural genomics, collaboratory for structural genomics, secsg; 2.59A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID}
Probab=98.08 E-value=5.3e-06 Score=76.80 Aligned_cols=58 Identities=12% Similarity=0.232 Sum_probs=52.3
Q ss_pred cCcccccCCCCceecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHhhh-hhhhc
Q 003889 699 IDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDL-LIEDG 756 (788)
Q Consensus 699 idl~~~m~~~p~tV~~~~sl~~a~~lf~~~glr~lpVVd~~g~lvGIITr~DL-l~~~~ 756 (788)
..++++|++++.++++++++.++.++|++.+.+++||+|++|+++|+||++|+ .+...
T Consensus 8 ~~v~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~ 66 (138)
T 2p9m_A 8 IKVKDVMTKNVITAKRHEGVVEAFEKMLKYKISSLPVIDDENKVIGIVTTTDIGYNLIR 66 (138)
T ss_dssp CBGGGTSBCSCCCEETTSBHHHHHHHHHHHTCCEEEEECTTCBEEEEEEHHHHHHHHTT
T ss_pred CCHHHhhcCCceEECCCCcHHHHHHHHHHCCCcEEEEECCCCeEEEEEEHHHHHHHHHh
Confidence 34566799999999999999999999999999999999988999999999999 77654
No 94
>3jtf_A Magnesium and cobalt efflux protein; CBS domain, CORC, AMP, structural genomics, PSI-2, protein S initiative; HET: MSE AMP; 2.00A {Bordetella parapertussis}
Probab=98.08 E-value=3.9e-06 Score=77.14 Aligned_cols=57 Identities=14% Similarity=0.133 Sum_probs=50.9
Q ss_pred CcccccC--CCCceecCCCCHHHHHHHHHHcCCCEEEEecCC-CeEEEEEeHhhhhhhhc
Q 003889 700 DLGPFLN--PSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRA-SRVIGLITRKDLLIEDG 756 (788)
Q Consensus 700 dl~~~m~--~~p~tV~~~~sl~~a~~lf~~~glr~lpVVd~~-g~lvGIITr~DLl~~~~ 756 (788)
.++++|+ +++.++++++++.++.++|++.+.+++||+|++ |+++|+||.+|+++...
T Consensus 6 ~v~diM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~~~Givt~~dl~~~~~ 65 (129)
T 3jtf_A 6 TVADIMVPRSRMDLLDISQPLPQLLATIIETAHSRFPVYEDDRDNIIGILLAKDLLRYML 65 (129)
T ss_dssp BHHHHCEEGGGCCCEETTSCHHHHHHHHHHSCCSEEEEESSSTTCEEEEEEGGGGGGGGT
T ss_pred CHHHhCccHHHeEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCcEEEEEEHHHHHhHhc
Confidence 3455688 667899999999999999999999999999986 89999999999998764
No 95
>2d4z_A Chloride channel protein; CLC chloride channel cytoplasmic domain, CBS domains, ION CH regulatory subunit, transport protein; 3.10A {Torpedo marmorata} SCOP: d.37.1.1
Probab=98.07 E-value=4.4e-06 Score=86.34 Aligned_cols=58 Identities=16% Similarity=0.233 Sum_probs=52.0
Q ss_pred cCcccccCCCCceecCCCCHHHHHHHHHHcCCCEEEEecCC--CeEEEEEeHhhhhhhhc
Q 003889 699 IDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRA--SRVIGLITRKDLLIEDG 756 (788)
Q Consensus 699 idl~~~m~~~p~tV~~~~sl~~a~~lf~~~glr~lpVVd~~--g~lvGIITr~DLl~~~~ 756 (788)
+.++++|.+++++|.+++++.++.++|.+.+++++||||++ ++++|+||++||+++..
T Consensus 13 ~~v~diMt~~vvtv~~~~tv~~~~~lm~~~~~~~~PVVd~~~~~~LvGiIt~~dl~~~l~ 72 (250)
T 2d4z_A 13 IQVGDIMVRDVTSIASTSTYGDLLHVLRQTKLKFFPFVDTPDTNTLLGSIDRTEVEGLLQ 72 (250)
T ss_dssp CBTTSSSBSSCCCEETTCBHHHHHHHHHHCCCSEEEEESCTTTCBEEEEEEHHHHHHHHH
T ss_pred CChHHhcCCCCeEECCCCCHHHHHHHHHhcCCCEEEEEecCCCCeEEEEEEHHHHHHHHH
Confidence 34566699999999999999999999999999999999974 68999999999998654
No 96
>3lfr_A Putative metal ION transporter; CBS, AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 1.53A {Pseudomonas syringae}
Probab=98.03 E-value=6.8e-06 Score=76.31 Aligned_cols=56 Identities=13% Similarity=0.087 Sum_probs=50.6
Q ss_pred cccccC--CCCceecCCCCHHHHHHHHHHcCCCEEEEecCC-CeEEEEEeHhhhhhhhc
Q 003889 701 LGPFLN--PSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRA-SRVIGLITRKDLLIEDG 756 (788)
Q Consensus 701 l~~~m~--~~p~tV~~~~sl~~a~~lf~~~glr~lpVVd~~-g~lvGIITr~DLl~~~~ 756 (788)
++++|. +++.++++++++.++.++|++.+.+++||+|++ |+++|+||.+|+++...
T Consensus 5 v~~iM~~~~~~~~v~~~~~v~~a~~~m~~~~~~~~pVvd~~~~~~vGivt~~dl~~~~~ 63 (136)
T 3lfr_A 5 VRDIMVPRSQMISIKATQTPREFLPAVIDAAHSRYPVIGESHDDVLGVLLAKDLLPLIL 63 (136)
T ss_dssp HHHHSEEGGGCCCEETTCCHHHHHHHHHHHCCSEEEEESSSTTCEEEEEEGGGGGGGGG
T ss_pred hHhccccHHHEEEEcCCCCHHHHHHHHHhCCCCEEEEEcCCCCcEEEEEEHHHHHHHHH
Confidence 455587 567899999999999999999999999999987 89999999999998865
No 97
>2ef7_A Hypothetical protein ST2348; CBS-domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.10A {Sulfolobus tokodaii} SCOP: d.37.1.1
Probab=98.02 E-value=1.1e-05 Score=74.10 Aligned_cols=57 Identities=18% Similarity=0.401 Sum_probs=51.7
Q ss_pred CcccccCCCCceecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHhhhhhhhcC
Q 003889 700 DLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIEDGE 757 (788)
Q Consensus 700 dl~~~m~~~p~tV~~~~sl~~a~~lf~~~glr~lpVVd~~g~lvGIITr~DLl~~~~~ 757 (788)
.++++|.+++.++++++++.++.++|.+.+.+++||+| +|+++|+||++|+.+...+
T Consensus 5 ~v~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd-~~~~~Givt~~dl~~~~~~ 61 (133)
T 2ef7_A 5 IVKEYMKTQVISVTKDAKLNDIAKVMTEKNIGSVIVVD-GNKPVGIITERDIVKAIGK 61 (133)
T ss_dssp BGGGTSBCSCCEEETTCBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHHHT
T ss_pred cHHHhccCCCEEECCCCcHHHHHHHHHhcCCCEEEEEE-CCEEEEEEcHHHHHHHHhc
Confidence 45666999999999999999999999999999999999 7999999999999887554
No 98
>3lqn_A CBS domain protein; csgid, structural genomics, unknown function, center for structural genomics of infectious diseases; 1.80A {Bacillus anthracis} SCOP: d.37.1.0
Probab=98.01 E-value=4e-06 Score=79.03 Aligned_cols=59 Identities=17% Similarity=0.069 Sum_probs=53.1
Q ss_pred cCcccccC--CCCceecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHhhhhhhhcC
Q 003889 699 IDLGPFLN--PSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIEDGE 757 (788)
Q Consensus 699 idl~~~m~--~~p~tV~~~~sl~~a~~lf~~~glr~lpVVd~~g~lvGIITr~DLl~~~~~ 757 (788)
+.++++|. +++.++++++++.++.++|.+.+.+++||+|++|+++|+||++|+++....
T Consensus 15 ~~v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~ 75 (150)
T 3lqn_A 15 IFVKDLMISSEKVAHVQIGNGLEHALLVLVKSGYSAIPVLDPMYKLHGLISTAMILDGILG 75 (150)
T ss_dssp CBHHHHSEEGGGSCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHTBC
T ss_pred CChhhcccCCCceEEECCCCcHHHHHHHHHHcCCcEEEEECCCCCEEEEEEHHHHHHHHHh
Confidence 45667798 458999999999999999999999999999988999999999999988753
No 99
>4gqw_A CBS domain-containing protein CBSX1, chloroplasti; thioredoxin, plant, protein binding; 2.20A {Arabidopsis thaliana}
Probab=97.98 E-value=7.6e-06 Score=76.86 Aligned_cols=56 Identities=20% Similarity=0.336 Sum_probs=50.7
Q ss_pred cCcccccCC--CCceecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHhhhhhh
Q 003889 699 IDLGPFLNP--SPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIE 754 (788)
Q Consensus 699 idl~~~m~~--~p~tV~~~~sl~~a~~lf~~~glr~lpVVd~~g~lvGIITr~DLl~~ 754 (788)
+.++++|.+ ++.++++++++.++.++|.+.+.+++||+|++|+++|+||++|+++.
T Consensus 5 ~~v~~im~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~G~vt~~dl~~~ 62 (152)
T 4gqw_A 5 YTVGEFMTKKEDLHVVKPTTTVDEALELLVENRITGFPVIDEDWKLVGLVSDYDLLAL 62 (152)
T ss_dssp SBGGGTSEESTTCCCBCTTSBHHHHHHHHHHTTCSEEEEECTTCBEEEEEEHHHHTTC
T ss_pred EEhhhccCCCCCCeEECCCCcHHHHHHHHHHcCCceEEEEeCCCeEEEEEEHHHHHHh
Confidence 345566987 78999999999999999999999999999998999999999999865
No 100
>2emq_A Hypothetical conserved protein; CBS domains, NPPSFA, national project on protein structural functional analyses; 2.50A {Geobacillus kaustophilus}
Probab=97.98 E-value=7.6e-06 Score=77.62 Aligned_cols=59 Identities=20% Similarity=0.235 Sum_probs=53.0
Q ss_pred cCcccccCC--CCceecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHhhhhhhhcC
Q 003889 699 IDLGPFLNP--SPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIEDGE 757 (788)
Q Consensus 699 idl~~~m~~--~p~tV~~~~sl~~a~~lf~~~glr~lpVVd~~g~lvGIITr~DLl~~~~~ 757 (788)
..++++|.+ ++.++++++++.++.++|.+.+.+++||+|++|+++|+||++|+++....
T Consensus 11 ~~v~~im~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~ 71 (157)
T 2emq_A 11 MTVKPFLIPADKVAHVQPGNYLDHALLVLTKTGYSAIPVLDTSYKLHGLISMTMMMDAILG 71 (157)
T ss_dssp CBSTTTCEEGGGSCCBCTTSBHHHHHHHHHHSSSSEEEEECTTCCEEEEEEHHHHHHHSBC
T ss_pred CcHHhhccCCccceEECCCCcHHHHHHHHHHCCceEEEEEcCCCCEEEEeeHHHHHHHHhc
Confidence 456667986 88999999999999999999999999999988999999999999987653
No 101
>3ctu_A CBS domain protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.81A {Streptococcus pneumoniae TIGR4} PDB: 3k6e_A
Probab=97.98 E-value=5.5e-06 Score=78.65 Aligned_cols=57 Identities=18% Similarity=0.229 Sum_probs=51.0
Q ss_pred CcccccC--CCCceecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHhhhhhhhc
Q 003889 700 DLGPFLN--PSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIEDG 756 (788)
Q Consensus 700 dl~~~m~--~~p~tV~~~~sl~~a~~lf~~~glr~lpVVd~~g~lvGIITr~DLl~~~~ 756 (788)
.++++|. +++.++++++++.++.++|.+.+.+++||+|++|+++|+||.+|+++...
T Consensus 16 ~v~dim~p~~~~~~v~~~~~l~~a~~~m~~~~~~~~~Vvd~~~~~~Giit~~dl~~~~~ 74 (156)
T 3ctu_A 16 QEETFLTPAKNLAVLIDTHNADHATLLLSQMTYTRVPVVTDEKQFVGTIGLRDIMAYQM 74 (156)
T ss_dssp TGGGGEEEGGGCCCEETTSBHHHHHHHHTTCSSSEEEEECC-CBEEEEEEHHHHHHHHH
T ss_pred HHHHHcCcccCceEECCCCCHHHHHHHHHHCCCceEeEECCCCEEEEEEcHHHHHHHHH
Confidence 4566688 67899999999999999999999999999998899999999999998765
No 102
>3lhh_A CBS domain protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG, cell membrane; HET: MSE AMP; 2.10A {Shewanella oneidensis}
Probab=97.98 E-value=7.2e-06 Score=79.51 Aligned_cols=59 Identities=15% Similarity=0.174 Sum_probs=52.7
Q ss_pred cCcccccC--CCCceecCCCCHHHHHHHHHHcCCCEEEEecCC-CeEEEEEeHhhhhhhhcC
Q 003889 699 IDLGPFLN--PSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRA-SRVIGLITRKDLLIEDGE 757 (788)
Q Consensus 699 idl~~~m~--~~p~tV~~~~sl~~a~~lf~~~glr~lpVVd~~-g~lvGIITr~DLl~~~~~ 757 (788)
..++++|. +++.++++++++.++.++|++.+.+++||+|++ ++++|+||.+|+++...+
T Consensus 42 ~~v~diM~~~~~~~~v~~~~~v~~a~~~m~~~~~~~~pVvd~~~~~lvGivt~~dl~~~~~~ 103 (172)
T 3lhh_A 42 RTISSLMVPRSDIVFLDLNLPLDANLRTVMQSPHSRFPVCRNNVDDMVGIISAKQLLSESIA 103 (172)
T ss_dssp -CTTTTSEEGGGCCCEETTSCHHHHHHHHHTCCCSEEEEESSSTTSEEEEEEHHHHHHHHHT
T ss_pred CCHHHhCccHHHeEEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEEHHHHHHHHhh
Confidence 34566698 678899999999999999999999999999988 999999999999998754
No 103
>1yav_A Hypothetical protein BSU14130; cystathionine beta synthase (CBS) domain, structural genomics, protein structure initiative, PSI; 2.10A {Bacillus subtilis} SCOP: d.37.1.1
Probab=97.96 E-value=5.4e-06 Score=79.04 Aligned_cols=59 Identities=19% Similarity=0.177 Sum_probs=53.2
Q ss_pred cCcccccCC--CCceecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHhhhhhhhcC
Q 003889 699 IDLGPFLNP--SPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIEDGE 757 (788)
Q Consensus 699 idl~~~m~~--~p~tV~~~~sl~~a~~lf~~~glr~lpVVd~~g~lvGIITr~DLl~~~~~ 757 (788)
..++++|.+ ++.++++++++.++.++|.+.+.+++||+|++|+++|+||++|+++....
T Consensus 14 ~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~~~~lvGivt~~dl~~~~~~ 74 (159)
T 1yav_A 14 ATVGQFMIEADKVAHVQVGNNLEHALLVLTKTGYTAIPVLDPSYRLHGLIGTNMIMNSIFG 74 (159)
T ss_dssp CBHHHHSEEGGGSCCEETTCBHHHHHHHHHHHCCSEEEEECTTCBEEEEEEHHHHHHHHBC
T ss_pred hhHHHHhCCccceEEECCCCcHHHHHHHHHhCCCcEEEEECCCCCEEEEeEHHHHHHHhhh
Confidence 345666988 89999999999999999999999999999988999999999999987654
No 104
>1pvm_A Conserved hypothetical protein TA0289; structural genomics, CBS domain, PSI, protein structure initiative; 1.50A {Thermoplasma acidophilum dsm 1728} SCOP: d.37.1.1 g.41.13.1 PDB: 2qh1_A
Probab=97.96 E-value=1.8e-05 Score=77.55 Aligned_cols=58 Identities=10% Similarity=0.155 Sum_probs=53.1
Q ss_pred cCcccccCCCCceecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHhhhhhhhc
Q 003889 699 IDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIEDG 756 (788)
Q Consensus 699 idl~~~m~~~p~tV~~~~sl~~a~~lf~~~glr~lpVVd~~g~lvGIITr~DLl~~~~ 756 (788)
..++++|++++.++++++++.++.++|.+.+.+++||+|++|+++|+||.+|+++...
T Consensus 9 ~~v~~im~~~~~~v~~~~~l~ea~~~~~~~~~~~~pVvd~~g~~vGivt~~dl~~~~~ 66 (184)
T 1pvm_A 9 MRVEKIMNSNFKTVNWNTTVFDAVKIMNENHLYGLVVKDDNGNDVGLLSERSIIKRFI 66 (184)
T ss_dssp CBGGGTSBTTCCEEETTCBHHHHHHHHHHHTCCEEEEECTTSCEEEEEEHHHHHHHTG
T ss_pred cCHHHhcCCCCeEECCCCcHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHh
Confidence 4566679999999999999999999999999999999998899999999999998754
No 105
>3i8n_A Uncharacterized protein VP2912; APC64273.1, vibrio parahaemolyticus RIMD 2210633, structural genomics, PSI-2; 2.15A {Vibrio parahaemolyticus}
Probab=97.94 E-value=5.2e-06 Score=76.35 Aligned_cols=59 Identities=14% Similarity=0.322 Sum_probs=51.4
Q ss_pred CcccccCC--CCceecCCCCHHHHHHHHHHcCCCEEEEecCC-CeEEEEEeHhhhhhhhcCC
Q 003889 700 DLGPFLNP--SPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRA-SRVIGLITRKDLLIEDGED 758 (788)
Q Consensus 700 dl~~~m~~--~p~tV~~~~sl~~a~~lf~~~glr~lpVVd~~-g~lvGIITr~DLl~~~~~~ 758 (788)
.++++|++ ...++++++++.++.++|++.+.+++||+|++ |+++|+||.+|+++...+.
T Consensus 7 ~v~~iM~~~~~v~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~~~Givt~~dl~~~~~~~ 68 (130)
T 3i8n_A 7 PVTQVMTPRPVVFRVDATMTINEFLDKHKDTPFSRPLVYSEQKDNIIGFVHRLELFKMQQSG 68 (130)
T ss_dssp CCTTTSCCBCCCCEEETTSBHHHHHHHTTTCSCSCCEEESSSTTCEEEECCHHHHHHHHHTT
T ss_pred CHhhCCCcHHHEEEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCcEEEEEEHHHHHHHHhcC
Confidence 45666984 45689999999999999999999999999987 8999999999999986543
No 106
>1y5h_A Hypothetical protein RV2626C; CBS domain, unknown function; 1.50A {Mycobacterium tuberculosis} SCOP: d.37.1.1 PDB: 1xkf_A
Probab=97.94 E-value=5.3e-06 Score=76.34 Aligned_cols=55 Identities=18% Similarity=0.319 Sum_probs=50.3
Q ss_pred cCcccccCCCCceecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHhhhhh
Q 003889 699 IDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLI 753 (788)
Q Consensus 699 idl~~~m~~~p~tV~~~~sl~~a~~lf~~~glr~lpVVd~~g~lvGIITr~DLl~ 753 (788)
..++++|.+++.++++++++.++.++|.+.+.+++||+|++|+++|+||++|+++
T Consensus 8 ~~v~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~ 62 (133)
T 1y5h_A 8 TTARDIMNAGVTCVGEHETLTAAAQYMREHDIGALPICGDDDRLHGMLTDRDIVI 62 (133)
T ss_dssp CCHHHHSEETCCCEETTSBHHHHHHHHHHHTCSEEEEECGGGBEEEEEEHHHHHH
T ss_pred cCHHHHhcCCceEeCCCCCHHHHHHHHHHhCCCeEEEECCCCeEEEEEeHHHHHH
Confidence 3456669899999999999999999999999999999988899999999999984
No 107
>3oi8_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADN; 1.99A {Neisseria meningitidis serogroup B}
Probab=97.94 E-value=9.8e-06 Score=77.16 Aligned_cols=59 Identities=17% Similarity=0.205 Sum_probs=52.2
Q ss_pred cCcccccCC--CCceecCCCCHHHHHHHHHHcCCCEEEEecCCC-eEEEEEeHhhhhhhhcC
Q 003889 699 IDLGPFLNP--SPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRAS-RVIGLITRKDLLIEDGE 757 (788)
Q Consensus 699 idl~~~m~~--~p~tV~~~~sl~~a~~lf~~~glr~lpVVd~~g-~lvGIITr~DLl~~~~~ 757 (788)
..++++|.+ ++.++++++++.++.++|++.+.+++||+|+++ +++|+||.+|+++...+
T Consensus 38 ~~v~diM~~~~~~~~v~~~~~i~~a~~~m~~~~~~~~pVvd~~~~~lvGivt~~dl~~~~~~ 99 (156)
T 3oi8_A 38 LEVRDAMITRSRMNVLKENDSIERITAYVIDTAHSRFPVIGEDKDEVLGILHAKDLLKYMFN 99 (156)
T ss_dssp CBGGGTCEEGGGCCCEETTCCHHHHHHHHHHHCCSEEEEESSSTTCEEEEEEGGGGGGGSSC
T ss_pred CCHhheeeeHHHeEEECCCCCHHHHHHHHHHCCCCEEEEEcCCCCcEEEEEEHHHHHHHHHc
Confidence 345667986 789999999999999999999999999999874 99999999999987643
No 108
>2nyc_A Nuclear protein SNF4; bateman2 domain, AMP kinase, protein binding; 1.90A {Saccharomyces cerevisiae} SCOP: d.37.1.1 PDB: 2nye_A
Probab=97.94 E-value=1.6e-05 Score=73.98 Aligned_cols=54 Identities=9% Similarity=0.036 Sum_probs=50.3
Q ss_pred ccCCCCceecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHhhhhhhhcC
Q 003889 704 FLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIEDGE 757 (788)
Q Consensus 704 ~m~~~p~tV~~~~sl~~a~~lf~~~glr~lpVVd~~g~lvGIITr~DLl~~~~~ 757 (788)
+|.+++.++++++++.++.++|.+.+.+++||+|++|+++|+||++|+++...+
T Consensus 16 ~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~ 69 (144)
T 2nyc_A 16 ITQDNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDENGYLINVYEAYDVLGLIKG 69 (144)
T ss_dssp CBCSSCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHHHT
T ss_pred CCCCCceEECCCCcHHHHHHHHHHcCcceeeEEcCCCcEEEEEcHHHHHHHhcc
Confidence 688889999999999999999999999999999988999999999999987654
No 109
>3hf7_A Uncharacterized CBS-domain protein; CSB-domain PAIR, AMP, PSI, MCSG, STR genomics, midwest center for structural genomics; HET: AMP; 2.75A {Klebsiella pneumoniae subsp}
Probab=97.94 E-value=6.2e-06 Score=75.99 Aligned_cols=58 Identities=5% Similarity=0.011 Sum_probs=50.7
Q ss_pred cccccC--CCCceecCCCCHHHHHHHHHHcCCCEEEEecC-CCeEEEEEeHhhhhhhhcCC
Q 003889 701 LGPFLN--PSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPR-ASRVIGLITRKDLLIEDGED 758 (788)
Q Consensus 701 l~~~m~--~~p~tV~~~~sl~~a~~lf~~~glr~lpVVd~-~g~lvGIITr~DLl~~~~~~ 758 (788)
++++|. +++.++++++++.++.++|++.+.+++||+|+ +|+++|+||.+|+++...+.
T Consensus 4 v~~iM~~~~~~~~v~~~~~v~~a~~~m~~~~~~~~pVv~~~~~~lvGivt~~dl~~~~~~~ 64 (130)
T 3hf7_A 4 VNDIMVPRNEIVGIDINDDWKSIVRQLTHSPHGRIVLYRDSLDDAISMLRVREAYRLMTEK 64 (130)
T ss_dssp HHHHSEEGGGCCEEETTSCHHHHHHHHHTCSSSEEEEESSSGGGEEEEEEHHHHHHHHTSS
T ss_pred HHHhCccHHHEEEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCCcEEEEEEHHHHHHHHhcc
Confidence 455685 46889999999999999999999999999975 58999999999999987653
No 110
>2pfi_A Chloride channel protein CLC-Ka; cystathionine beta synthetase (CBS) domains containing protein, transport protein; 1.60A {Homo sapiens}
Probab=97.94 E-value=8.1e-06 Score=77.87 Aligned_cols=59 Identities=17% Similarity=0.297 Sum_probs=52.9
Q ss_pred cCcccccCCCCceecCCCCHHHHHHHHHHcCCCEEEEecC--CCeEEEEEeHhhhhhhhcC
Q 003889 699 IDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPR--ASRVIGLITRKDLLIEDGE 757 (788)
Q Consensus 699 idl~~~m~~~p~tV~~~~sl~~a~~lf~~~glr~lpVVd~--~g~lvGIITr~DLl~~~~~ 757 (788)
..++++|++++.++++++++.++.++|.+.+.+++||+|+ +|+++|+||++|+.+....
T Consensus 13 ~~v~dim~~~~~~v~~~~~~~~a~~~~~~~~~~~~pVvd~~~~~~~~Givt~~dl~~~~~~ 73 (164)
T 2pfi_A 13 VRVEHFMNHSITTLAKDTPLEEVVKVVTSTDVTEYPLVESTESQILVGIVQRAQLVQALQA 73 (164)
T ss_dssp CBHHHHCBCCCCCEETTCBHHHHHHHHHTCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHC
T ss_pred CCHHHHcCCCCeEECCCCcHHHHHHHHHhCCCCceeEEecCCCCEEEEEEEHHHHHHHHHh
Confidence 3456669999999999999999999999999999999996 6999999999999987643
No 111
>3k6e_A CBS domain protein; streptococcus pneumoniae TIGR4, structural genomics, PSI-2, protein structure initiative; 2.81A {Streptococcus pneumoniae}
Probab=97.91 E-value=8.6e-06 Score=77.83 Aligned_cols=56 Identities=18% Similarity=0.228 Sum_probs=48.9
Q ss_pred cccccC--CCCceecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHhhhhhhhc
Q 003889 701 LGPFLN--PSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIEDG 756 (788)
Q Consensus 701 l~~~m~--~~p~tV~~~~sl~~a~~lf~~~glr~lpVVd~~g~lvGIITr~DLl~~~~ 756 (788)
++++|. .+..+|++++++.+|+++|.+.+++++||+|++|+++|+||.+|++++..
T Consensus 17 ~~~iM~P~~~v~~v~~~~t~~~a~~~m~~~~~s~~pVvd~~~~lvGiit~~Di~~~~~ 74 (156)
T 3k6e_A 17 EETFLTPAKNLAVLIDTHNADHATLLLSQMTYTRVPVVTDEKQFVGTIGLRDIMAYQM 74 (156)
T ss_dssp GGGGEEETTSSCCEETTSBHHHHHHHHTTSSSSEEEEECC-CBEEEEEEHHHHHHHHH
T ss_pred HHHhCcchhHeEEECCcCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEecchhhhhh
Confidence 445575 36789999999999999999999999999999999999999999988754
No 112
>3fhm_A Uncharacterized protein ATU1752; CBS domain, prokaryotic, bound nucleotide, AMP, NADH, struct genomics, PSI-2; HET: AMP NAI; 2.70A {Agrobacterium tumefaciens str}
Probab=97.89 E-value=8e-06 Score=78.49 Aligned_cols=58 Identities=17% Similarity=0.249 Sum_probs=52.2
Q ss_pred cCcccccCC---CCceecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHhhhhhhhc
Q 003889 699 IDLGPFLNP---SPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIEDG 756 (788)
Q Consensus 699 idl~~~m~~---~p~tV~~~~sl~~a~~lf~~~glr~lpVVd~~g~lvGIITr~DLl~~~~ 756 (788)
+.++++|++ ++.++++++++.++.++|.+.+.+++||+|++|+++|+||++|+++...
T Consensus 24 ~~v~dim~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~ 84 (165)
T 3fhm_A 24 TFVKDLLDRKGRDVVTVGPDVSIGEAAGTLHAHKIGAVVVTDADGVVLGIFTERDLVKAVA 84 (165)
T ss_dssp CBHHHHHHHHCSCCCEECTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHH
T ss_pred cCHHHHhccCCCCCeEECCCCCHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHHH
Confidence 455666985 7899999999999999999999999999998899999999999998654
No 113
>3sl7_A CBS domain-containing protein CBSX2; CBS-PAIR protein, redox regulator, plant CBS domain, thiored chloroplast, membrane protein; 1.91A {Arabidopsis thaliana}
Probab=97.87 E-value=8.3e-06 Score=79.11 Aligned_cols=55 Identities=22% Similarity=0.374 Sum_probs=50.3
Q ss_pred CcccccCC--CCceecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHhhhhhh
Q 003889 700 DLGPFLNP--SPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIE 754 (788)
Q Consensus 700 dl~~~m~~--~p~tV~~~~sl~~a~~lf~~~glr~lpVVd~~g~lvGIITr~DLl~~ 754 (788)
.++++|.+ ++.++++++++.++.++|.+.+.+++||+|++|+++|+||++|+++.
T Consensus 5 ~v~dim~~~~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~~~~~~Givt~~dl~~~ 61 (180)
T 3sl7_A 5 TVGDFMTPRQNLHVVKPSTSVDDALELLVEKKVTGLPVIDDNWTLVGVVSDYDLLAL 61 (180)
T ss_dssp BHHHHSEEGGGCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHTCC
T ss_pred eHHHhcCCCCCceeeCCCCcHHHHHHHHHHcCCCeEEEECCCCeEEEEEEHHHHHhh
Confidence 45566888 88999999999999999999999999999998999999999999864
No 114
>2j9l_A Chloride channel protein 5; ION channel, ION transport, voltage-gated; HET: ATP; 2.30A {Homo sapiens} SCOP: d.37.1.1 PDB: 2ja3_A*
Probab=97.85 E-value=1.2e-05 Score=78.37 Aligned_cols=59 Identities=20% Similarity=0.325 Sum_probs=51.9
Q ss_pred ccCcccccCCC----Ccee--cCCCCHHHHHHHHHHcCCCEEEEe--cCCCeEEEEEeHhhhhhhhc
Q 003889 698 YIDLGPFLNPS----PYVV--PEDMSLSKVYNLFRQLGLRHIFVV--PRASRVIGLITRKDLLIEDG 756 (788)
Q Consensus 698 ~idl~~~m~~~----p~tV--~~~~sl~~a~~lf~~~glr~lpVV--d~~g~lvGIITr~DLl~~~~ 756 (788)
...++++|.+. ++++ ++++++.+|.++|.+.+.+++||+ |++|+++|+||++|+++...
T Consensus 10 ~~~v~dim~~~~~~~~~~v~~~~~~~~~~a~~~~~~~~~~~~pVv~~d~~~~lvGiit~~dl~~~~~ 76 (185)
T 2j9l_A 10 KTLAMDVMKPRRNDPLLTVLTQDSMTVEDVETIISETTYSGFPVVVSRESQRLVGFVLRRDLIISIE 76 (185)
T ss_dssp CCBHHHHSBSCTTSCCCCCEESSCEEHHHHHHHHHHCCCSEEEEESCTTTCBEEEEEEHHHHHHHHH
T ss_pred cCcHHHHhcccccCceEEEecCCCccHHHHHHHHHhcCCCceeEEEECCCCeEEEEEEHHHHHHHHH
Confidence 34556668877 7889 999999999999999999999999 77899999999999998754
No 115
>1o50_A CBS domain-containing predicted protein TM0935; CBS-domain PAIR fold, structural genomics, joint center for structural genomics, JCSG; 1.87A {Thermotoga maritima} SCOP: d.37.1.1
Probab=97.84 E-value=1.6e-05 Score=75.67 Aligned_cols=56 Identities=20% Similarity=0.367 Sum_probs=51.2
Q ss_pred cCcccccCCCCceecCCCCHHHHHHHHHHcCCCE-EEEecCCCeEEEEEeHhhhhhhh
Q 003889 699 IDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRH-IFVVPRASRVIGLITRKDLLIED 755 (788)
Q Consensus 699 idl~~~m~~~p~tV~~~~sl~~a~~lf~~~glr~-lpVVd~~g~lvGIITr~DLl~~~ 755 (788)
..++++|.+++.++++++++.+|.++|.+.+.+. +||+|++ +++|+||++|+++..
T Consensus 16 ~~v~~im~~~~~~v~~~~tl~ea~~~m~~~~~~~~~~Vvd~~-~~vGivt~~dl~~~~ 72 (157)
T 1o50_A 16 KDVCKLISLKPTVVEEDTPIEEIVDRILEDPVTRTVYVARDN-KLVGMIPVMHLLKVS 72 (157)
T ss_dssp HHHTTSSCCCCEEECTTCBHHHHHHHHHHSTTCCEEEEEETT-EEEEEEEHHHHHHHH
T ss_pred ccHhhcccCCCceECCCCCHHHHHHHHHhCCCCccEEEEECC-EEEEEEEHHHHHHHH
Confidence 3456669999999999999999999999999999 9999987 999999999999864
No 116
>2rc3_A CBS domain; in SITU proteolysis, BR, structural genomics, PSI-2, protein structure initiative; HET: NAD; 1.60A {Nitrosomonas europaea atcc 19718} SCOP: d.37.1.1
Probab=97.83 E-value=2.4e-05 Score=72.13 Aligned_cols=55 Identities=13% Similarity=0.266 Sum_probs=49.8
Q ss_pred CcccccC---CCCceecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHhhhhhhh
Q 003889 700 DLGPFLN---PSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIED 755 (788)
Q Consensus 700 dl~~~m~---~~p~tV~~~~sl~~a~~lf~~~glr~lpVVd~~g~lvGIITr~DLl~~~ 755 (788)
.++++|+ +++.++++++++.++.++|.+.+.+++||+| +|+++|+||++|+++..
T Consensus 7 ~v~~im~~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd-~~~~~Givt~~dl~~~~ 64 (135)
T 2rc3_A 7 TVKHLLQEKGHTVVAIGPDDSVFNAMQKMAADNIGALLVMK-DEKLVGILTERDFSRKS 64 (135)
T ss_dssp BHHHHHHHHCCCCCEECTTSBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHG
T ss_pred eHHHHHhcCCCCcEEECCCCcHHHHHHHHHhcCCCEEEEEE-CCEEEEEEehHHHHHHH
Confidence 4556698 8899999999999999999999999999999 69999999999999643
No 117
>2uv4_A 5'-AMP-activated protein kinase subunit gamma-1; transferase, CBS domain, lipid synthesis, fatty acid biosynthesis; HET: AMP; 1.33A {Homo sapiens} PDB: 2uv5_A* 2uv6_A* 2uv7_A*
Probab=97.78 E-value=3.1e-05 Score=73.17 Aligned_cols=56 Identities=18% Similarity=0.300 Sum_probs=49.8
Q ss_pred CcccccCCCCceecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHhhhhhhhcC
Q 003889 700 DLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIEDGE 757 (788)
Q Consensus 700 dl~~~m~~~p~tV~~~~sl~~a~~lf~~~glr~lpVVd~~g~lvGIITr~DLl~~~~~ 757 (788)
.+.++ +++.++++++++.++.++|.+.+.+++||+|++|+++|+||++|+++...+
T Consensus 24 ~v~~~--~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~vGivt~~dl~~~~~~ 79 (152)
T 2uv4_A 24 QIGTY--ANIAMVRTTTPVYVALGIFVQHRVSALPVVDEKGRVVDIYSKFDVINLAAE 79 (152)
T ss_dssp TCSBC--SSCCCEETTCBHHHHHHHHHHHCCSEEEEECTTSBEEEEEEHHHHHHHHHC
T ss_pred cCCcc--CCceEeCCCCcHHHHHHHHHHcCCceEeEECCCCcEEEEEeHHHHHHHhcc
Confidence 44444 678899999999999999999999999999988999999999999987654
No 118
>3ocm_A Putative membrane protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADP; 1.80A {Bordetella parapertussis}
Probab=97.78 E-value=2.7e-05 Score=75.65 Aligned_cols=58 Identities=14% Similarity=0.096 Sum_probs=51.1
Q ss_pred cCcccccC--CCCceecCCCCHHHHHHHHHHcCCCEEEEecCC-CeEEEEEeHhhhhhhhc
Q 003889 699 IDLGPFLN--PSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRA-SRVIGLITRKDLLIEDG 756 (788)
Q Consensus 699 idl~~~m~--~~p~tV~~~~sl~~a~~lf~~~glr~lpVVd~~-g~lvGIITr~DLl~~~~ 756 (788)
..++++|. ++++++++++++.+++++|++.+.+++||+|++ ++++|+||.+|+++...
T Consensus 36 ~~v~diM~~~~~v~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~~lvGivt~~Dl~~~~~ 96 (173)
T 3ocm_A 36 RSIRSIMTPRTDVSWVNIDDDAATIRQQLTAAPHSFFPVCRGSLDEVVGIGRAKDLVADLI 96 (173)
T ss_dssp SCSTTTSEEGGGCCCEETTSCHHHHHHHHHHSSCSEEEEESSSTTSEEEEEEHHHHHHHHH
T ss_pred CCHHHhCCcHHHeEEEeCCCCHHHHHHHHHhCCCCEEEEEeCCCCCEEEEEEHHHHHHHHh
Confidence 34566696 467899999999999999999999999999987 89999999999998754
No 119
>3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase; HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB: 3pc2_A* 3pc4_A*
Probab=97.68 E-value=3.3e-05 Score=88.68 Aligned_cols=58 Identities=16% Similarity=0.336 Sum_probs=53.3
Q ss_pred cCcccccCCCCceecCC-CCHHHHHHHHHHcCCCEEEEec-CCCeEEEEEeHhhhhhhhc
Q 003889 699 IDLGPFLNPSPYVVPED-MSLSKVYNLFRQLGLRHIFVVP-RASRVIGLITRKDLLIEDG 756 (788)
Q Consensus 699 idl~~~m~~~p~tV~~~-~sl~~a~~lf~~~glr~lpVVd-~~g~lvGIITr~DLl~~~~ 756 (788)
..++++|.+++++|+++ +++.+++++|++.+++++||+| ++++++||||++||++...
T Consensus 384 ~~V~diM~~~~vtv~~~~~tv~ea~~~m~~~~~~~lpVvd~~~g~lvGiVt~~Dll~~l~ 443 (527)
T 3pc3_A 384 LAIAELELPAPPVILKSDATVGEAIALMKKHRVDQLPVVDQDDGSVLGVVGQETLITQIV 443 (527)
T ss_dssp SBGGGGCCCCCSCCEETTCBHHHHHHHHHHHTCSEEEEECTTTCCEEEEEEHHHHHHHHH
T ss_pred CcHHHhCcCCCeEEcCCCCcHHHHHHHHHHcCCCeEEEEECCCCEEEEEEEHHHHHHHHH
Confidence 45677799999999999 9999999999999999999999 6799999999999998765
No 120
>3kxr_A Magnesium transporter, putative; cystathionine beta-synthase, Mg2+ transporter, structural GE PSI-2, protein structure initiative; 2.41A {Shewanella oneidensis mr-1}
Probab=97.68 E-value=5.8e-05 Score=75.49 Aligned_cols=61 Identities=16% Similarity=0.190 Sum_probs=56.4
Q ss_pred ccchhhhccCCceEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCCcEEEEEEeHHHHHHHHhcc
Q 003889 583 QMTAKEACGAQKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSK 648 (788)
Q Consensus 583 ~l~v~diM~~~~vv~l~~~~tv~~a~~~L~~~~~~~fPVVd~~~~~~~~lvGiI~r~dL~~lL~~~ 648 (788)
+.+++|+|+++ ++++++++++.++.+.|.+++.+.+||||+ +|+++|+|+++|++..+...
T Consensus 115 ~~~v~~im~~~-~~~v~~~~~l~~a~~~m~~~~~~~lpVVD~----~g~lvGiIT~~Dil~~i~~e 175 (205)
T 3kxr_A 115 HEPLISLLSED-SRALTANTTLLDAAEAIEHSREIELPVIDD----AGELIGRVTLRAATALVREH 175 (205)
T ss_dssp TSBGGGGCCSS-CCCEETTSCHHHHHHHHHTSSCSEEEEECT----TSBEEEEEEHHHHHHHHHHH
T ss_pred cchHHHHhcCC-CeEECCCCCHHHHHHHHHhcCCCEEEEEcC----CCeEEEEEEHHHHHHHHHHH
Confidence 46799999998 999999999999999999999999999998 79999999999999987654
No 121
>3oco_A Hemolysin-like protein containing CBS domains; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.20A {Oenococcus oeni}
Probab=97.64 E-value=8.2e-05 Score=70.34 Aligned_cols=60 Identities=20% Similarity=0.227 Sum_probs=54.4
Q ss_pred ccchhhhccCCceEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCCcEEEEEEeHHHHHHHHhcc
Q 003889 583 QMTAKEACGAQKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSK 648 (788)
Q Consensus 583 ~l~v~diM~~~~vv~l~~~~tv~~a~~~L~~~~~~~fPVVd~~~~~~~~lvGiI~r~dL~~lL~~~ 648 (788)
..+++++| ++ ++++++++++.++++.|.+++.+.+||+|+ +|+++|+|+++|+++.+...
T Consensus 85 ~~~v~~~m-~~-~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~----~g~~vGivt~~dil~~l~~~ 144 (153)
T 3oco_A 85 KAKISTIM-RD-IVSVPENMKVPDVMEEMSAHRVPMAIVIDE----YGGTSGIITDKDVYEELFGN 144 (153)
T ss_dssp TSBGGGTC-BC-CEEEETTSBHHHHHHHHHHTTCSCEEEECT----TSCEEEEECHHHHHHHHHC-
T ss_pred CCcHHHHh-CC-CeEECCCCCHHHHHHHHHHcCCcEEEEEeC----CCCEEEEeeHHHHHHHHhcc
Confidence 56799999 77 899999999999999999999999999998 79999999999999877653
No 122
>4fry_A Putative signal-transduction protein with CBS DOM; CBS domain,ssgcid, structural genomics, niaid; HET: NAD AMP; 2.10A {Burkholderia ambifaria}
Probab=97.58 E-value=0.0001 Score=69.84 Aligned_cols=61 Identities=16% Similarity=0.258 Sum_probs=55.7
Q ss_pred ccchhhhccCCceEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCCcEEEEEEeHHHHHHHHhccc
Q 003889 583 QMTAKEACGAQKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKV 649 (788)
Q Consensus 583 ~l~v~diM~~~~vv~l~~~~tv~~a~~~L~~~~~~~fPVVd~~~~~~~~lvGiI~r~dL~~lL~~~~ 649 (788)
..+++|+|.++ +.++++++++.++++.|.+++.+.+||+|+ ++++|+|+++|+++.+....
T Consensus 77 ~~~v~~~m~~~-~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~-----g~~~Giit~~dil~~l~~~~ 137 (157)
T 4fry_A 77 ATRVEEIMTAK-VRYVEPSQSTDECMALMTEHRMRHLPVLDG-----GKLIGLISIGDLVKSVIADQ 137 (157)
T ss_dssp SCBHHHHSBSS-CCCBCTTSBHHHHHHHHHHHTCSEEEEEET-----TEEEEEEEHHHHHHHHHTTC
T ss_pred ccCHHHHcCCC-CcEECCCCcHHHHHHHHHHcCCCEEEEEEC-----CEEEEEEEHHHHHHHHHHHH
Confidence 57899999998 999999999999999999999999999985 79999999999999876543
No 123
>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A*
Probab=97.24 E-value=0.00097 Score=75.91 Aligned_cols=60 Identities=15% Similarity=0.325 Sum_probs=55.6
Q ss_pred ccchhhhccC-CceEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCCcEEEEEEeHHHHHHHHhc
Q 003889 583 QMTAKEACGA-QKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQS 647 (788)
Q Consensus 583 ~l~v~diM~~-~~vv~l~~~~tv~~a~~~L~~~~~~~fPVVd~~~~~~~~lvGiI~r~dL~~lL~~ 647 (788)
+.+++|+|++ + ++++++++++.++.+.|.+++.+.+||||+ +++++|+|+++|+++.+..
T Consensus 174 ~~~V~~vM~~~~-~vtv~~~~~l~eal~~m~~~~i~~lpVVDe----~g~l~GiIT~~Dil~~~~~ 234 (511)
T 3usb_A 174 SIKISDVMTKEQ-LITAPVGTTLSEAEKILQKYKIEKLPLVDN----NGVLQGLITIKDIEKVIEF 234 (511)
T ss_dssp SSBHHHHCCCCC-CCCEETTCCHHHHHHHHHHHTCSEEEEECT----TSBEEEEEEHHHHHHHHHC
T ss_pred CCcHHHhcccCC-CEEECCCCCHHHHHHHHHHcCCCEEEEEeC----CCCEeeeccHHHHHHhhhc
Confidence 5689999998 7 999999999999999999999999999998 8999999999999887654
No 124
>2yvy_A MGTE, Mg2+ transporter MGTE; membrane protein, transport protein; 2.30A {Thermus thermophilus} PDB: 2yvz_A
Probab=97.23 E-value=0.00026 Score=74.16 Aligned_cols=60 Identities=20% Similarity=0.336 Sum_probs=54.1
Q ss_pred ccchhhhccCCceEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCCcEEEEEEeHHHHHHHHhc
Q 003889 583 QMTAKEACGAQKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQS 647 (788)
Q Consensus 583 ~l~v~diM~~~~vv~l~~~~tv~~a~~~L~~~~~~~fPVVd~~~~~~~~lvGiI~r~dL~~lL~~ 647 (788)
..+++++|.++ ++++++++++.++.+.|.+++.+.+||||+ +|+++|+|+.+|++..+..
T Consensus 198 ~~~v~~im~~~-~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~----~g~lvGivT~~Dil~~i~~ 257 (278)
T 2yvy_A 198 RTRVAEIMNPK-VVYVRTDTDQEEVARLMADYDFTVLPVVDE----EGRLVGIVTVDDVLDVLEA 257 (278)
T ss_dssp TCBSTTTSBSS-CCCEETTSBHHHHHHHHHHHTCSEEEEECT----TSBEEEEEEHHHHHHHC--
T ss_pred CCcHHHHhCCC-CeEEeCCCCHHHHHHHHHhcCCCEEEEEeC----CCeEEEEEEHHHHHHHHHH
Confidence 56799999988 999999999999999999999999999998 7999999999999887644
No 125
>2oux_A Magnesium transporter; 10001B, structural genomics, PSI-2, P structure initiative, nysgxrc; 2.16A {Enterococcus faecalis} SCOP: a.118.26.1 d.37.1.1
Probab=97.22 E-value=0.00033 Score=73.78 Aligned_cols=61 Identities=16% Similarity=0.266 Sum_probs=56.0
Q ss_pred ccchhhhccCCceEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCCcEEEEEEeHHHHHHHHhcc
Q 003889 583 QMTAKEACGAQKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSK 648 (788)
Q Consensus 583 ~l~v~diM~~~~vv~l~~~~tv~~a~~~L~~~~~~~fPVVd~~~~~~~~lvGiI~r~dL~~lL~~~ 648 (788)
..+++++|.++ ++++++++++.++.+.|.+++.+.+||||+ +|+++|+|+++|++..+...
T Consensus 200 ~~~v~~im~~~-~~~v~~~~~l~ea~~~m~~~~~~~lpVVd~----~g~lvGiIT~~Dil~~i~~e 260 (286)
T 2oux_A 200 DTLIADILNER-VISVHVGDDQEDVAQTIRDYDFLAVPVTDY----DDHLLGIVTVDDIIDVIDDE 260 (286)
T ss_dssp TSBHHHHSBSC-CCCEETTSBHHHHHHHHHHHTCSEEEEECT----TCBEEEEEEHHHHHHHHHHH
T ss_pred CCcHHHHcCCC-CeeecCCCCHHHHHHHHHHcCCcEEEEEcC----CCeEEEEEEHHHHHHHHHHH
Confidence 56799999998 999999999999999999999999999998 79999999999999877653
No 126
>2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A {Thermus thermophilus} PDB: 2yvx_A
Probab=97.05 E-value=0.00058 Score=77.12 Aligned_cols=60 Identities=20% Similarity=0.336 Sum_probs=55.7
Q ss_pred ccchhhhccCCceEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCCcEEEEEEeHHHHHHHHhc
Q 003889 583 QMTAKEACGAQKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQS 647 (788)
Q Consensus 583 ~l~v~diM~~~~vv~l~~~~tv~~a~~~L~~~~~~~fPVVd~~~~~~~~lvGiI~r~dL~~lL~~ 647 (788)
+.+++|+|+++ ++++++++++.++.+.|++++.+.+||||+ +++++|+||++|+.+.+..
T Consensus 218 ~~~v~dim~~~-~~~v~~~~~l~ea~~~m~~~~~~~lpVVDe----~g~lvGiIT~~Dil~~i~~ 277 (473)
T 2zy9_A 218 RTRVAEIMNPK-VVYVRTDTDQEEVARLMADYDFTVLPVVDE----EGRLVGIVTVDDVLDVLEA 277 (473)
T ss_dssp TSBGGGTSBSS-CCCEESSSBHHHHHHHHHHHTCSEEEEECT----TSBEEEEEEHHHHHHHHHH
T ss_pred CCcHHHHhCCC-CeEEeCCCcHHHHHHHHHhcCCcEEEEEcC----CCEEEEEEehHhhHHHHHH
Confidence 56899999988 999999999999999999999999999998 7999999999999987654
No 127
>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor}
Probab=96.99 E-value=0.00068 Score=76.90 Aligned_cols=53 Identities=21% Similarity=0.345 Sum_probs=47.7
Q ss_pred cccccCCCCceecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHhhhhh
Q 003889 701 LGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLI 753 (788)
Q Consensus 701 l~~~m~~~p~tV~~~~sl~~a~~lf~~~glr~lpVVd~~g~lvGIITr~DLl~ 753 (788)
.+++|.++|+++++++++.++.++|++.+.+.+||+|++++++|+||++|+..
T Consensus 91 ~~~~m~~d~v~v~~~~tv~ea~~~m~~~~~s~~PVvd~~~~lvGiVt~rDL~~ 143 (496)
T 4fxs_A 91 FEAGVVTHPVTVRPEQTIADVMELTHYHGFAGFPVVTENNELVGIITGRDVRF 143 (496)
T ss_dssp CCC--CBCCCCBCSSSBHHHHHHHHTSSCCCEEEEECSSSBEEEEEEHHHHTT
T ss_pred cccccccCceEECCCCCHHHHHHHHHHcCCcEEEEEccCCEEEEEEEHHHHhh
Confidence 34568899999999999999999999999999999998899999999999973
No 128
>1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel, oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus} SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A* 1mei_A* 1mew_A* 1pvn_A* 1lrt_A*
Probab=96.90 E-value=0.00028 Score=80.39 Aligned_cols=60 Identities=18% Similarity=0.245 Sum_probs=0.0
Q ss_pred ccchhhhccCC-ceEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCCcEEEEEEeHHHHHHHHh
Q 003889 583 QMTAKEACGAQ-KVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQ 646 (788)
Q Consensus 583 ~l~v~diM~~~-~vv~l~~~~tv~~a~~~L~~~~~~~fPVVd~~~~~~~~lvGiI~r~dL~~lL~ 646 (788)
+.+++|+|+++ +++++++++++.++++.|.+++++.+||||+ +++++|+|+++|+++.+.
T Consensus 160 ~~~V~diM~~~~~~~tv~~~~sl~ea~~~m~~~~i~~lpVVDe----~g~lvGiIT~~Dil~~~~ 220 (503)
T 1me8_A 160 ETKVSDMMTPFSKLVTAHQDTKLSEANKIIWEKKLNALPIIDD----DQHLRYIVFRKDYDRSQV 220 (503)
T ss_dssp -----------------------------------------------------------------
T ss_pred cCcHHHHhCCCCCCEEEcCCCcHHHHHHHHHHcCCCEEEEEcC----CCeEEEEEEecHHHHhhh
Confidence 56789999862 2789999999999999999999999999998 799999999999977654
No 129
>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1
Probab=96.66 E-value=0.0003 Score=80.00 Aligned_cols=55 Identities=22% Similarity=0.355 Sum_probs=1.4
Q ss_pred cCcccccCCCCceecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHhhhhh
Q 003889 699 IDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLI 753 (788)
Q Consensus 699 idl~~~m~~~p~tV~~~~sl~~a~~lf~~~glr~lpVVd~~g~lvGIITr~DLl~ 753 (788)
.+.+++|.+++++|++++++.++.++|++.+.+.+||+|++++++|+||++|+.+
T Consensus 95 ~~~~~iM~~~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~lvGivt~~Dl~~ 149 (494)
T 1vrd_A 95 KKTENGIIYDPITVTPDMTVKEAIDLMAEYKIGGLPVVDEEGRLVGLLTNRDVRF 149 (494)
T ss_dssp HTC----------------------------------------------------
T ss_pred hhHhhcCccCCeEECCCCCHHHHHHHHHHcCceEEEEEcCCCEEEEEEEHHHHHh
Confidence 3456679999999999999999999999999999999998899999999999985
No 130
>1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1
Probab=96.47 E-value=0.0032 Score=71.50 Aligned_cols=55 Identities=15% Similarity=0.304 Sum_probs=50.4
Q ss_pred CcccccCCCCceecCCCCHHHHHHHHHHcCCCEEEEec--CCCeEEEEEeHhhhhhh
Q 003889 700 DLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVP--RASRVIGLITRKDLLIE 754 (788)
Q Consensus 700 dl~~~m~~~p~tV~~~~sl~~a~~lf~~~glr~lpVVd--~~g~lvGIITr~DLl~~ 754 (788)
+++++|.++++++++++++.++.++|++.+.+.+||+| ++++++|+||.+|+++.
T Consensus 91 ~~~~im~~~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~~~lvGivt~~Dl~~~ 147 (491)
T 1zfj_A 91 RSENGVIIDPFFLTPEHKVSEAEELMQRYRISGVPIVETLANRKLVGIITNRDMRFI 147 (491)
T ss_dssp HHTTTTSSSCCCBCSSSBHHHHHHHHHHTTCSEEEEESCTTTCBEEEEEEHHHHHHC
T ss_pred hHHhcCcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEEeCCCCEEEEEEEHHHHhhh
Confidence 34667999999999999999999999999999999999 78999999999999863
No 131
>4af0_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase, GTP biosynthesis, drug resistance; HET: MOA IMP; 2.20A {Cryptococcus neoformans} PDB: 4af0_B*
Probab=96.15 E-value=0.00085 Score=74.95 Aligned_cols=57 Identities=28% Similarity=0.397 Sum_probs=0.0
Q ss_pred ccchhhhccCCceEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCCcEEEEEEeHHHHHHH
Q 003889 583 QMTAKEACGAQKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVL 644 (788)
Q Consensus 583 ~l~v~diM~~~~vv~l~~~~tv~~a~~~L~~~~~~~fPVVd~~~~~~~~lvGiI~r~dL~~l 644 (788)
+.+++|+|+++ ++++++..+.+++.++|.+++...+||||+ +++|+|+|+++|+.+.
T Consensus 199 ~~~V~evMT~~-lvt~~~~~~leeA~~iL~~~kieklpVVd~----~g~LvGlIT~kDi~k~ 255 (556)
T 4af0_A 199 ETPIKSVMTTE-VVTGSSPITLEKANSLLRETKKGKLPIVDS----NGHLVSLVARSDLLKN 255 (556)
T ss_dssp --------------------------------------------------------------
T ss_pred ceEhhhhcccc-eEEecCCCCHHHHHHHHHHccccceeEEcc----CCcEEEEEEechhhhh
Confidence 46799999998 999999999999999999999999999999 8999999999999664
No 132
>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*
Probab=96.13 E-value=0.0011 Score=75.79 Aligned_cols=55 Identities=16% Similarity=0.302 Sum_probs=27.8
Q ss_pred CcccccCCCCceecCCCCHHHHHHHHHHcCCCEEEEecC---CCeEEEEEeHhhhhhh
Q 003889 700 DLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPR---ASRVIGLITRKDLLIE 754 (788)
Q Consensus 700 dl~~~m~~~p~tV~~~~sl~~a~~lf~~~glr~lpVVd~---~g~lvGIITr~DLl~~ 754 (788)
..+++|.++|+++++++++.++.++|++.+.+.+||+|+ +++++|+||++|+.+.
T Consensus 109 ~~~~im~~~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~~~~lvGiVt~~Dl~~~ 166 (514)
T 1jcn_A 109 NFEQGFITDPVVLSPSHTVGDVLEAKMRHGFSGIPITETGTMGSKLVGIVTSRDIDFL 166 (514)
T ss_dssp TCCTTSCSSCCCCCC-----------------CEESCC--------CCEECTTTTC--
T ss_pred hhhhccccCCEEECCCCCHHHHHHHHHhcCCCEEEEEeCCCcCCEEEEEEEHHHHHhh
Confidence 455668899999999999999999999999999999998 5899999999999764
No 133
>2cu0_A Inosine-5'-monophosphate dehydrogenase; structural genomics, pyrococcus horikoshii OT3, riken structural genomics/PROT initiative, RSGI; HET: XMP; 2.10A {Pyrococcus horikoshii} SCOP: c.1.5.1
Probab=96.12 E-value=0.0019 Score=73.16 Aligned_cols=58 Identities=26% Similarity=0.453 Sum_probs=0.0
Q ss_pred ccchhhhccCCceEEecCcccHHHHHHHHhhCCCCeeEEeeCCCCCCcEEEEEEeHHHHHHHH
Q 003889 583 QMTAKEACGAQKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLL 645 (788)
Q Consensus 583 ~l~v~diM~~~~vv~l~~~~tv~~a~~~L~~~~~~~fPVVd~~~~~~~~lvGiI~r~dL~~lL 645 (788)
+.+++|+|+++ ++++++++++.++++.|.+++.+.+||||+ +++++|+|+++|+++..
T Consensus 149 ~~~v~~im~~~-~~~v~~~~~l~eal~~m~~~~~~~lpVVde----~g~lvGiiT~~Dil~~~ 206 (486)
T 2cu0_A 149 GKLVKELMTKE-VITVPESIEVEEALKIMIENRIDRLPVVDE----RGKLVGLITMSDLVARK 206 (486)
T ss_dssp ---------------------------------------------------------------
T ss_pred CCCHHHHccCC-CeEECCcCcHHHHHHHHHHcCCCEEEEEec----CCeEEEEEEHHHHHHhh
Confidence 56789999988 899999999999999999999999999998 78999999999997753
No 134
>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa}
Probab=96.03 E-value=0.001 Score=75.31 Aligned_cols=53 Identities=19% Similarity=0.374 Sum_probs=2.0
Q ss_pred CcccccCCCCceecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHhhhhh
Q 003889 700 DLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLI 753 (788)
Q Consensus 700 dl~~~m~~~p~tV~~~~sl~~a~~lf~~~glr~lpVVd~~g~lvGIITr~DLl~ 753 (788)
+.+++|.++|.++++++++.++.++|++.+++.+||+| +++++||||.+|+..
T Consensus 89 ~~~~~m~~~~v~v~~~~tv~ea~~~m~~~~~s~~pVvd-~g~lvGIVt~rDl~~ 141 (490)
T 4avf_A 89 KHETAIVRDPVTVTPSTKIIELLQMAREYGFSGFPVVE-QGELVGIVTGRDLRV 141 (490)
T ss_dssp HCCC--------------------------------------------------
T ss_pred ccccCcccCceEeCCCCcHHHHHHHHHHhCCCEEEEEE-CCEEEEEEEhHHhhh
Confidence 34556889999999999999999999999999999999 699999999999963
No 135
>2pq4_B Periplasmic nitrate reductase precursor; NAPD/NAPA1-35, mixed beta-alpha sandwich structure, protein- peptide complex, alpha-helix; NMR {Escherichia coli}
Probab=28.25 E-value=31 Score=23.54 Aligned_cols=25 Identities=36% Similarity=0.448 Sum_probs=18.7
Q ss_pred hhhhHHHHhhhhhhhhhhcCCccch
Q 003889 228 DRRDLVTCGCAAGVAAAFRAPVGGV 252 (788)
Q Consensus 228 ~~r~li~~GaaAGvaaaF~APigGv 252 (788)
.||+|+-..++++.+++.+.|+.+.
T Consensus 4 sRR~FLK~~aaa~Aaaaag~~~~~~ 28 (35)
T 2pq4_B 4 SRRSFMKANAVAAAAAAAGLSVPGV 28 (35)
T ss_dssp CSHHHHHHHHHHHHHHHHCCCCSSS
T ss_pred cHHHHHHHHHHHHHHHHhcccchhH
Confidence 4899998877777777777776643
No 136
>1tif_A IF3-N, translation initiation factor 3; IF3 N-terminal domain, ribosome binding factor; 1.80A {Geobacillus stearothermophilus} SCOP: d.15.8.1
Probab=25.51 E-value=87 Score=25.48 Aligned_cols=27 Identities=11% Similarity=0.297 Sum_probs=19.9
Q ss_pred CCEEEEecCCCeEEEEEeHhhhhhhhc
Q 003889 730 LRHIFVVPRASRVIGLITRKDLLIEDG 756 (788)
Q Consensus 730 lr~lpVVd~~g~lvGIITr~DLl~~~~ 756 (788)
.+.+=|+|++|.-+|++++++-++...
T Consensus 13 ~~eVrli~~~Ge~lGv~~~~eAl~~A~ 39 (78)
T 1tif_A 13 AREVRLIDQNGDQLGIKSKQEALEIAA 39 (78)
T ss_dssp CSEEEEECTTSCEEEEEEHHHHHHHHH
T ss_pred CCEEEEECCCCcCCCcccHHHHHHHHH
Confidence 345667888888888888888777544
No 137
>2ww9_B Protein transport protein SSS1; ribonucleoprotein, transmembrane, phospho signal sequence, membrane, ribosome, transport; 8.60A {Saccharomyces cerevisiae} PDB: 2wwa_B
Probab=23.61 E-value=2.6e+02 Score=22.81 Aligned_cols=43 Identities=19% Similarity=0.072 Sum_probs=24.5
Q ss_pred hHHHHHHHhc--CcccchhhHHHHHHHHHHHHHH-HHHHHHHHHHH
Q 003889 54 YAYREEQAQR--GKLYVGYSVVVKWFFALLIGIG-TGLAAVFINIS 96 (788)
Q Consensus 54 ~~~~~~~~~~--~~~~~~~~~~~~w~~~~liGv~-~Gl~~~~~~~~ 96 (788)
.-|.++|++- .....-+..+.+...+..+|++ +|++++++...
T Consensus 26 ~~f~kd~~rvlk~~~KPdr~Ef~~iak~t~iG~~imG~IGfiIkLI 71 (80)
T 2ww9_B 26 VEFVREGTQFLAKCKKPDLKEYTKIVKAVGIGFIAVGIIGYAIKLI 71 (80)
T ss_dssp HHHHHHHHHHHHSCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344566431 1122334456666677777874 58888886643
No 138
>1rh5_B Preprotein translocase SECE subunit; protein translocation, SECY, membrane protein, protein channels, protein transport; 3.20A {Methanocaldococcus jannaschii} SCOP: f.23.28.1 PDB: 1rhz_B 2yxq_B 2yxr_B 3dkn_B
Probab=20.63 E-value=2.8e+02 Score=22.24 Aligned_cols=31 Identities=13% Similarity=0.174 Sum_probs=20.4
Q ss_pred hhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Q 003889 70 YSVVVKWFFALLIGIG-TGLAAVFINISVENF 100 (788)
Q Consensus 70 ~~~~~~w~~~~liGv~-~Gl~~~~~~~~i~~~ 100 (788)
+..+.+-..+..+|++ +|++++++......+
T Consensus 31 r~EF~~iak~~~iG~~imG~IGfiIkli~ipI 62 (74)
T 1rh5_B 31 KDEYLAVAKVTALGISLLGIIGYIIHVPATYI 62 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666667777764 588888887655443
Done!