RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 003889
(788 letters)
>d1otsa_ f.20.1.1 (A:) Clc chloride channel {Escherichia coli
[TaxId: 562]}
Length = 444
Score = 218 bits (555), Expect = 1e-63
Identities = 113/511 (22%), Positives = 196/511 (38%), Gaps = 78/511 (15%)
Query: 57 REEQAQRGKLYVGYSVVVKWFFALLIGIGTGLAAVFINISVENFAGWKFSLTFSIIQKSY 116
R Q R L + + F A ++G GLAAV + V + +Y
Sbjct: 1 RRRQLIRQLLERDKTPLAILFMAAVVGTLVGLAAVAFDKGVAWLQNQRMGALVHTAD-NY 59
Query: 117 FAGFLVYILINLILVFSSVYIITKFAPAAAGSGIPEIKGYLNGVDIHGILLFRTLIGKIF 176
V L + +L +++ K+AP A GSGIPEI+G L + +R L K F
Sbjct: 60 PLLLTVAFLCSAVLAMFGYFLVRKYAPEAGGSGIPEIEGALEDQ--RPVRWWRVLPVKFF 117
Query: 177 GSIGSVGGGLALGKEGPLVHTGACIASLLGQGGSTKYHLRYRWLQVFRSDRDRRDLVTCG 236
G +G++GGG+ LG+EGP V G I ++ + + D R L+ G
Sbjct: 118 GGLGTLGGGMVLGREGPTVQIGGNIGRMVLD------------IFRLKGDEARHTLLATG 165
Query: 237 CAAGVAAAFRAPVGGVLFALEEVTSWWRSQLMWRVFFTSAIVAVVVRSAMGWCKSGKCGH 296
AAG+AAAF AP+ G+LF +EE+ +R L+ + + V++ + M + +
Sbjct: 166 AAAGLAAAFNAPLAGILFIIEEMRPQFRYTLIS---IKAVFIGVIMSTIMYRIFNHEVAL 222
Query: 297 FGSGGFIIWDISDGQEDYSFEELLPMAVIGVIGGLLGALFNQLTLYMTSWRRNYLHKKGN 356
G L ++G+I G+ G +FN+ L M +H
Sbjct: 223 IDVGKLSDA---------PLNTLWLYLILGIIFGIFGPIFNKWVLGMQDLLHR-VHGGNI 272
Query: 357 RVKIIEACVISVITSVISFGLPLLRKCSPCPESDLDSGIECPRPPGMYGNYVNFYCSKDK 416
++ I + ++ F P G N
Sbjct: 273 TKWVLMGGAIGGLCGLLGF-----------------------VAPATSGGGFNLIPI--- 306
Query: 417 EYNDLATIFFNTQDDAIRNLFSAKTIHEYSAQSLLTFLVMFYTLAVVTFGIAVPAGQFVP 476
T +S L+ V ++ F P G F P
Sbjct: 307 -----------------------ATAGNFSMGMLVFIFVARVITTLLCFSSGAPGGIFAP 343
Query: 477 GIMIGSTYGRLVGMFVVNFYKKLNIEEGTYALLGAASFLGGSMRMTVSLCVIMVEITNNL 536
+ +G+ G GM V + + ++E GT+A+ G + L S+R ++ ++++E+T+N
Sbjct: 344 MLALGTVLGTAFGMVAVELFPQYHLEAGTFAIAGMGALLAASIRAPLTGIILVLEMTDNY 403
Query: 537 KFLPLIMLVLLISKAVGDAFS-EGLYEEQAH 566
+ + +++ L + + + LY
Sbjct: 404 QLILPMIITGLGATLLAQFTGGKPLYSAILA 434
>d2j9la1 d.37.1.1 (A:578-746) Chloride channel protein 5, ClC-5
{Human (Homo sapiens) [TaxId: 9606]}
Length = 169
Score = 63.8 bits (154), Expect = 2e-12
Identities = 36/158 (22%), Positives = 65/158 (41%), Gaps = 24/158 (15%)
Query: 595 VVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHS 654
V + V DV +I+ ++GFPV+ + ++G VLR L++ +++ Q
Sbjct: 19 TVLTQDSMTVEDVETIISETTYSGFPVVVSRESQR--LVGFVLRRDLIISIENARKKQDG 76
Query: 655 PLPCDTRGGSKPISHSFSEFVKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPE 714
+ S + + L L+ SP+ V +
Sbjct: 77 VVST---------------------SIIYFTEHSPPLPPYTPPTLKLRNILDLSPFTVTD 115
Query: 715 DMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLL 752
+ V ++FR+LGLR V R++G+IT+KD+L
Sbjct: 116 LTPMEIVVDIFRKLGLRQCLVT-HNGRLLGIITKKDVL 152
>d2yzqa1 d.37.1.1 (A:123-278) Uncharacterized protein PH1780
{Pyrococcus horikoshii [TaxId: 53953]}
Length = 156
Score = 50.0 bits (118), Expect = 1e-07
Identities = 21/159 (13%), Positives = 43/159 (27%), Gaps = 19/159 (11%)
Query: 594 KVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQH 653
V + + + L + PV+D N +V L +
Sbjct: 13 YVSIVWEGTPLKAALKALLLSNSMALPVVDSEGNLVGIVDETDLLRDS----------EI 62
Query: 654 SPLPCDTRGGSKPISHSFSEFVKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVP 713
+ T + E + + + ++ V
Sbjct: 63 VRIMKSTELAASSEEEWILESHPTLLFEKFELQLPNKPVAEIM---------TRDVIVAT 113
Query: 714 EDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLL 752
M++ +V + + + V+ +IGLI DLL
Sbjct: 114 PHMTVHEVALKMAKYSIEQLPVIRGEGDLIGLIRDFDLL 152
Score = 29.6 bits (65), Expect = 0.83
Identities = 8/52 (15%), Positives = 18/52 (34%)
Query: 699 IDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKD 750
+++ P+ +V E L + VV ++G++ D
Sbjct: 4 VEIEPYYQRYVSIVWEGTPLKAALKALLLSNSMALPVVDSEGNLVGIVDETD 55
>d2d4za3 d.37.1.1 (A:527-606,A:691-770) Chloride channel protein,
CBS tandem {Marbled electric ray (Torpedo marmorata)
[TaxId: 7788]}
Length = 160
Score = 49.3 bits (116), Expect = 2e-07
Identities = 24/173 (13%), Positives = 55/173 (31%), Gaps = 24/173 (13%)
Query: 580 KMRQMTAKEACGAQKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRS 639
+ + + V S+ D++ +LR K FP +D L
Sbjct: 7 NKYNIQVGDIM-VRDVTSIASTSTYGDLLHVLRQTKLKFFPFVDTPDTNTLLGS------ 59
Query: 640 HLLVLLQSKVDFQHSPLPCDTRGGSKPISHSFSEFVKPASSKGLSIDDIHLSSDDMEMYI 699
+ + + + +P + + ++ + +
Sbjct: 60 ------IDRTEVEGLLQRRISAYRRQPFEEMLTLEEIYRWEQREKNVVVNFETCRI---- 109
Query: 700 DLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLL 752
+ SP+ + E SL K + LF LGL +V +++G++ ++
Sbjct: 110 ------DQSPFQLVEGTSLQKTHTLFSLLGLDRAYVT-SMGKLVGVVALAEIQ 155
>d2nyca1 d.37.1.1 (A:181-320) Nuclear protein SNF4 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 140
Score = 45.9 bits (108), Expect = 2e-06
Identities = 24/160 (15%), Positives = 50/160 (31%), Gaps = 42/160 (26%)
Query: 593 QKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQ 652
+ S V DV+ +L + + P+ID + +I + +L L++ +
Sbjct: 17 DNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDENGY----LINVYEAYDVLGLIKGGIYND 72
Query: 653 HSPLPCDTRGGSKPISHSFSEFVKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVV 712
S + + Y
Sbjct: 73 LSL--------------------------------------SVGEALMRRSDDFEGVYTC 94
Query: 713 PEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLL 752
++ LS + + R+ + FVV R++G++T D+L
Sbjct: 95 TKNDKLSTIMDNIRKARVHRFFVVDDVGRLVGVLTLSDIL 134
>d1jr1a4 d.37.1.1 (A:113-232) Type II inosine monophosphate
dehydrogenase CBS domains {Chinese hamster (Cricetulus
griseus) [TaxId: 10029]}
Length = 120
Score = 45.5 bits (107), Expect = 2e-06
Identities = 9/64 (14%), Positives = 26/64 (40%)
Query: 689 HLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITR 748
L ++ + +++ V P ++L + + ++ + +V ++ +I R
Sbjct: 53 FLKEEEHDRFLEEIMTKREDLVVAPAGITLKEANEILQRSKKGKLPIVNENDELVAIIAR 112
Query: 749 KDLL 752
DL
Sbjct: 113 TDLK 116
>d2v8qe1 d.37.1.1 (E:182-326) 5'-AMP-activated protein kinase
subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 145
Score = 44.8 bits (105), Expect = 4e-06
Identities = 8/67 (11%), Positives = 20/67 (29%)
Query: 686 DDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGL 745
+ + + +L + N + + + VV V G+
Sbjct: 71 KTYNNLDVSVTKALQHRSHYFEGVLKCYLHETLEAIINRLVEAEVHRLVVVDEHDVVKGI 130
Query: 746 ITRKDLL 752
++ D+L
Sbjct: 131 VSLSDIL 137
>d2v8qe2 d.37.1.1 (E:23-181) 5'-AMP-activated protein kinase subunit
gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 159
Score = 41.7 bits (97), Expect = 8e-05
Identities = 17/174 (9%), Positives = 46/174 (26%), Gaps = 35/174 (20%)
Query: 581 MRQMTAKEAC-GAQKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRS 639
M+ + + K+V ++V L TN P+ + ++ +G++ +
Sbjct: 10 MKSHRCYDLIPTSSKLVVFDTSLQVKKAFFALVTNGVRAAPLW---DSKKQSFVGMLTIT 66
Query: 640 HLLVLLQSKVDFQHSPLPCDTRGGSKPISHSFSEFVKPASSKGLSIDDIHLSSDDMEMYI 699
+ +L +
Sbjct: 67 DFINILHRYYKSALVQIYE------------------------------LEEHKIETWRE 96
Query: 700 DLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVV-PRASRVIGLITRKDLL 752
+ + SL + + + + V+ P + + ++T K +L
Sbjct: 97 VYLQDSFKPLVCISPNASLFDAVSSLIRNKIHRLPVIDPESGNTLYILTHKRIL 150
>d2ouxa2 d.37.1.1 (A:136-262) Magnesium transporter MgtE
{Enterococcus faecalis [TaxId: 1351]}
Length = 127
Score = 40.5 bits (94), Expect = 1e-04
Identities = 12/67 (17%), Positives = 22/67 (32%), Gaps = 2/67 (2%)
Query: 695 MEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLL-- 752
+ + LN V V R + V ++G++T D++
Sbjct: 61 NDDDTLIADILNERVISVHVGDDQEDVAQTIRDYDFLAVPVTDYDDHLLGIVTVDDIIDV 120
Query: 753 IEDGEDS 759
I+D S
Sbjct: 121 IDDEAAS 127
>d2ooxe2 d.37.1.1 (E:182-334) Uncharacterized protein C1556.08c
{Schizosaccharomyces pombe [TaxId: 4896]}
Length = 153
Score = 40.7 bits (94), Expect = 1e-04
Identities = 7/46 (15%), Positives = 20/46 (43%)
Query: 707 PSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLL 752
+ L +++ + + +FVV ++ G+++ D+L
Sbjct: 84 DGVHTCRATDRLDGIFDAIKHSRVHRLFVVDENLKLEGILSLADIL 129
>d1o50a3 d.37.1.1 (A:1-145) Hypothetical protein TM0935 {Thermotoga
maritima [TaxId: 2336]}
Length = 145
Score = 40.3 bits (93), Expect = 2e-04
Identities = 9/45 (20%), Positives = 18/45 (40%)
Query: 708 SPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLL 752
P V D L + L ++ + VV ++G + ++L
Sbjct: 92 DPVYVHMDTPLEEALKLMIDNNIQEMPVVDEKGEIVGDLNSLEIL 136
>d1vr9a3 d.37.1.1 (A:1-121) Hypothetical protein TM0892, CBS tandem
{Thermotoga maritima [TaxId: 2336]}
Length = 121
Score = 39.1 bits (90), Expect = 3e-04
Identities = 10/44 (22%), Positives = 21/44 (47%)
Query: 709 PYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLL 752
+ V E+ +++ LF + ++ VV R+ G ++ D L
Sbjct: 70 DFFVHEEDNITHALLLFLEHQEPYLPVVDEEMRLKGAVSLHDFL 113
>d2ooxe1 d.37.1.1 (E:3-181) Uncharacterized protein C1556.08c
{Schizosaccharomyces pombe [TaxId: 4896]}
Length = 179
Score = 39.6 bits (91), Expect = 5e-04
Identities = 21/178 (11%), Positives = 51/178 (28%), Gaps = 35/178 (19%)
Query: 581 MRQMTAKEACGA-QKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRS 639
+R T+ + +++ + V +S+L N P+ D N + L +
Sbjct: 17 IRSRTSYDVLPTSFRLIVFDVTLFVKTSLSLLTLNNIVSAPLWDSEAN--KFAGLLTMAD 74
Query: 640 HLLVLLQSKVDFQHSPLPCDTRGGSKPISHSFSEFVKPASSKGLSIDDIHLSSDDMEMYI 699
+ V+ S + + L + ++ +
Sbjct: 75 FVNVIKYYY-----------------QSSSFPEAIAEIDKFRLLGLREVERKIGAI---- 113
Query: 700 DLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVV-----PRASRVIGLITRKDLL 752
P V SL + R I ++ + ++ ++T+ +L
Sbjct: 114 ------PPETIYVHPMHSLMDACLAMSKSRARRIPLIDVDGETGSEMIVSVLTQYRIL 165
>d2yzqa2 d.37.1.1 (A:1-122) Uncharacterized protein PH1780
{Pyrococcus horikoshii [TaxId: 53953]}
Length = 122
Score = 37.2 bits (85), Expect = 0.001
Identities = 12/44 (27%), Positives = 22/44 (50%)
Query: 709 PYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLL 752
VV E+ +L K L + R + VV + +G++T D++
Sbjct: 70 VPVVKENDTLKKAAKLMLEYDYRRVVVVDSKGKPVGILTVGDII 113
>d1zfja4 d.37.1.1 (A:95-220) Type II inosine monophosphate
dehydrogenase CBS domains {Streptococcus pyogenes
[TaxId: 1314]}
Length = 126
Score = 36.4 bits (83), Expect = 0.003
Identities = 9/40 (22%), Positives = 17/40 (42%)
Query: 713 PEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLL 752
L + + + + +V + R+ GLIT KD+
Sbjct: 74 AVGTDLETAERILHEHRIEKLPLVDNSGRLSGLITIKDIE 113
>d2rc3a1 d.37.1.1 (A:23-149) Uncharacterized protein NE2398
{Nitrosomonas europaea [TaxId: 915]}
Length = 127
Score = 36.3 bits (83), Expect = 0.004
Identities = 11/58 (18%), Positives = 24/58 (41%), Gaps = 1/58 (1%)
Query: 695 MEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLL 752
+ + V + + L ++ +RH+ V+ +VIGL++ DL+
Sbjct: 66 PVKDTQVKEIMTRQVAYVDLNNTNEDCMALITEMRVRHLPVL-DDGKVIGLLSIGDLV 122
>d2ef7a1 d.37.1.1 (A:1-127) Uncharacterized protein ST2348
{Sulfolobus tokodaii [TaxId: 111955]}
Length = 127
Score = 36.0 bits (82), Expect = 0.004
Identities = 15/67 (22%), Positives = 28/67 (41%)
Query: 686 DDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGL 745
D + + F+ S + ED ++ L RQ +RH+ VV + G+
Sbjct: 54 DIVKAIGKGKSLETKAEEFMTASLITIREDSPITGALALMRQFNIRHLPVVDDKGNLKGI 113
Query: 746 ITRKDLL 752
I+ +D+
Sbjct: 114 ISIRDIT 120
>d2yvxa2 d.37.1.1 (A:132-275) Magnesium transporter MgtE {Thermus
thermophilus [TaxId: 274]}
Length = 144
Score = 36.0 bits (82), Expect = 0.005
Identities = 13/47 (27%), Positives = 20/47 (42%)
Query: 706 NPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLL 752
NP V D +V L + VV R++G++T D+L
Sbjct: 72 NPKVVYVRTDTDQEEVARLMADYDFTVLPVVDEEGRLVGIVTVDDVL 118
>d2yzia1 d.37.1.1 (A:4-135) Uncharacterized protein PH0107
{Pyrococcus horikoshii [TaxId: 53953]}
Length = 132
Score = 35.5 bits (81), Expect = 0.007
Identities = 10/59 (16%), Positives = 24/59 (40%), Gaps = 1/59 (1%)
Query: 694 DMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLL 752
+ I + + + + L +V + ++HI + +++G+ T DLL
Sbjct: 65 GLPYDIPVERIMTRNLITANVNTPLGEVLRKMAEHRIKHILIE-EEGKIVGIFTLSDLL 122
Score = 30.5 bits (68), Expect = 0.31
Identities = 10/58 (17%), Positives = 24/58 (41%)
Query: 695 MEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLL 752
M+M + ++ V S+ + L + + + V+ V+G T+ D++
Sbjct: 1 MDMKAPIKVYMTKKLLGVKPSTSVQEASRLMMEFDVGSLVVINDDGNVVGFFTKSDII 58
>d1pvma4 d.37.1.1 (A:1-142) Hypothetical protein Ta0289 {Archaeon
Thermoplasma acidophilum [TaxId: 2303]}
Length = 142
Score = 34.1 bits (77), Expect = 0.020
Identities = 17/82 (20%), Positives = 28/82 (34%)
Query: 689 HLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITR 748
+ + + + + V D + V + GL VV RV+G++T
Sbjct: 59 FIPRNKKPDEVPIRLVMRKPIPKVKSDYDVKDVAAYLSENGLERCAVVDDPGRVVGIVTL 118
Query: 749 KDLLIEDGEDSTTVELQSTSVR 770
DL S T L S +
Sbjct: 119 TDLSRYLSRASITDILLSHRTK 140
>d3ddja2 d.37.1.1 (A:1-135) Uncharacterized protein SSO3205
{Sulfolobus solfataricus [TaxId: 2287]}
Length = 135
Score = 33.8 bits (76), Expect = 0.025
Identities = 9/52 (17%), Positives = 21/52 (40%)
Query: 701 LGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLL 752
+ ++ P+P V N+ + VV + +G++T ++ L
Sbjct: 76 IIDYMTPNPVTVYNTSDEFTAINIMVTRNFGSLPVVDINDKPVGIVTEREFL 127
>d1y5ha3 d.37.1.1 (A:2-124) Hypothetical protein Rv2626c
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 123
Score = 33.3 bits (75), Expect = 0.028
Identities = 14/68 (20%), Positives = 30/68 (44%), Gaps = 1/68 (1%)
Query: 685 IDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIG 744
I L++ G S Y V + S+ ++ N+ + +R + V+ R++G
Sbjct: 53 IVIKGLAAGLDPNTATAGELARDSIYYVDANASIQEMLNVMEEHQVRRVPVI-SEHRLVG 111
Query: 745 LITRKDLL 752
++T D+
Sbjct: 112 IVTEADIA 119
>d1pbja3 d.37.1.1 (A:2-121) Hypothetical protein MTH1622 {Archaeon
Methanobacterium thermoautotrophicum [TaxId: 145262]}
Length = 120
Score = 32.5 bits (73), Expect = 0.054
Identities = 6/58 (10%), Positives = 20/58 (34%), Gaps = 1/58 (1%)
Query: 695 MEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLL 752
+ + + + ++ + + + + V +IG+I+ D+L
Sbjct: 60 DLAEVKVWEVMERDLVTISPRATIKEAAEKMVKNVVWRLLVE-EDDEIIGVISATDIL 116
>d2riha1 d.37.1.1 (A:2-132) Uncharacterized protein PAE2072
{Pyrobaculum aerophilum [TaxId: 13773]}
Length = 131
Score = 32.2 bits (72), Expect = 0.084
Identities = 11/58 (18%), Positives = 24/58 (41%)
Query: 695 MEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLL 752
+ SP V + + R+ +RH+ VV + ++G+++ +DL
Sbjct: 62 RLDLDGPAMPIANSPITVLDTDPVHVAAEKMRRHNIRHVVVVNKNGELVGVLSIRDLC 119
>d3ddja1 d.37.1.1 (A:136-276) Uncharacterized protein SSO3205
{Sulfolobus solfataricus [TaxId: 2287]}
Length = 141
Score = 32.3 bits (72), Expect = 0.090
Identities = 8/49 (16%), Positives = 23/49 (46%)
Query: 704 FLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLL 752
+ + + E S+++ + + ++ + + + G+IT +DLL
Sbjct: 78 VMVTNLVTIDELASVNRAAAEMIVKRIGSLLILNKDNTIRGIITERDLL 126
>d2o16a3 d.37.1.1 (A:20-158) Hypothetical protein VC0737 {Vibrio
cholerae [TaxId: 666]}
Length = 139
Score = 31.8 bits (71), Expect = 0.11
Identities = 10/66 (15%), Positives = 22/66 (33%), Gaps = 1/66 (1%)
Query: 687 DIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLI 746
D + L ++ V L + ++ + + VV ++G+I
Sbjct: 63 QRSAQGDSLAFETPLFEVMHTDVTSVAPQAGLKESAIYMQKHKIGCLPVV-AKDVLVGII 121
Query: 747 TRKDLL 752
T D +
Sbjct: 122 TDSDFV 127
Score = 31.0 bits (69), Expect = 0.23
Identities = 11/47 (23%), Positives = 27/47 (57%)
Query: 706 NPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLL 752
P+ + +L+ +L L +RH+ +V +++G+++++DLL
Sbjct: 9 TRHPHTLLRTHTLNDAKHLMEALDIRHVPIVDANKKLLGIVSQRDLL 55
>d1yava3 d.37.1.1 (A:13-144) Hypothetical protein YkuL {Bacillus
subtilis [TaxId: 1423]}
Length = 132
Score = 29.2 bits (64), Expect = 0.80
Identities = 5/22 (22%), Positives = 9/22 (40%)
Query: 731 RHIFVVPRASRVIGLITRKDLL 752
+ V G+ TR+ +L
Sbjct: 104 GFVCVENDEQVFEGIFTRRVVL 125
>d1wbha1 c.1.10.1 (A:1-213) KDPG aldolase {Escherichia coli [TaxId:
562]}
Length = 213
Score = 28.7 bits (64), Expect = 1.9
Identities = 7/41 (17%), Positives = 17/41 (41%)
Query: 583 QMTAKEACGAQKVVSLPRIIKVADVVSILRTNKHNGFPVID 623
+ +A+ VV + + K+ V + + G V++
Sbjct: 5 KTSAESILTTGPVVPVIVVKKLEHAVPMAKALVAGGVRVLN 45
>d2j8cm1 f.26.1.1 (M:1-303) M (medium) subunit {Rhodobacter
sphaeroides [TaxId: 1063]}
Length = 303
Score = 28.5 bits (64), Expect = 2.7
Identities = 15/51 (29%), Positives = 21/51 (41%), Gaps = 3/51 (5%)
Query: 60 QAQRGKLYVGYSVVVKWFFALL--IGIGTG-LAAVFINISVENFAGWKFSL 107
AQ G +Y+G V+ F L+ IG N +V + FSL
Sbjct: 44 NAQLGPIYLGSLGVLSLFSGLMWFFTIGIWFWYQAGWNPAVFLRDLFFFSL 94
>d1sbxa_ a.6.1.4 (A:) Ski oncogene {Human (Homo sapiens) [TaxId:
9606]}
Length = 106
Score = 25.9 bits (57), Expect = 7.6
Identities = 11/49 (22%), Positives = 22/49 (44%), Gaps = 13/49 (26%)
Query: 715 DMSLSKVYNLFRQLG-------------LRHIFVVPRASRVIGLITRKD 750
D SL ++ + +L L+ + ++P ++ GLIT+ D
Sbjct: 47 DFSLQQINAVCDELHIYCSRCTADQLEILKVMGILPFSAPSCGLITKTD 95
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.324 0.140 0.422
Gapped
Lambda K H
0.267 0.0522 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,961,859
Number of extensions: 142961
Number of successful extensions: 363
Number of sequences better than 10.0: 1
Number of HSP's gapped: 353
Number of HSP's successfully gapped: 44
Length of query: 788
Length of database: 2,407,596
Length adjustment: 93
Effective length of query: 695
Effective length of database: 1,130,706
Effective search space: 785840670
Effective search space used: 785840670
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 57 (26.2 bits)