Query 003890
Match_columns 788
No_of_seqs 517 out of 4163
Neff 9.2
Searched_HMMs 46136
Date Thu Mar 28 13:50:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003890.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003890hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 8.5E-78 1.8E-82 700.5 46.1 683 58-769 22-798 (889)
2 PLN03210 Resistant to P. syrin 100.0 1.4E-52 3.1E-57 515.8 42.0 545 185-779 184-907 (1153)
3 PF00931 NB-ARC: NB-ARC domain 100.0 5.7E-37 1.2E-41 324.4 12.5 241 190-434 1-284 (287)
4 PLN00113 leucine-rich repeat r 99.8 1.6E-19 3.4E-24 223.2 15.8 243 519-776 117-367 (968)
5 PLN00113 leucine-rich repeat r 99.8 1.3E-19 2.9E-24 223.8 13.9 265 498-776 118-415 (968)
6 KOG0444 Cytoskeletal regulator 99.8 3.9E-21 8.5E-26 203.8 -2.0 268 497-779 54-376 (1255)
7 KOG4194 Membrane glycoprotein 99.7 1.4E-18 3.1E-23 183.8 2.4 268 498-776 102-403 (873)
8 KOG0444 Cytoskeletal regulator 99.7 3.2E-19 7E-24 189.4 -4.9 260 497-774 31-300 (1255)
9 KOG0472 Leucine-rich repeat pr 99.7 1.4E-18 3.1E-23 176.4 -5.0 256 498-776 206-539 (565)
10 KOG4194 Membrane glycoprotein 99.7 1.3E-17 2.8E-22 176.6 1.1 154 542-697 191-349 (873)
11 PLN03210 Resistant to P. syrin 99.6 3.8E-15 8.2E-20 184.8 16.5 246 515-778 554-838 (1153)
12 KOG0472 Leucine-rich repeat pr 99.6 2.6E-17 5.7E-22 167.2 -5.4 236 500-779 70-311 (565)
13 KOG0618 Serine/threonine phosp 99.5 5.2E-16 1.1E-20 173.2 -0.7 263 498-780 219-491 (1081)
14 KOG0617 Ras suppressor protein 99.4 3E-15 6.5E-20 135.4 -5.5 160 515-687 29-194 (264)
15 PRK15370 E3 ubiquitin-protein 99.4 5.9E-13 1.3E-17 154.8 10.7 223 497-750 198-428 (754)
16 KOG0617 Ras suppressor protein 99.4 7.9E-15 1.7E-19 132.7 -4.1 156 543-701 28-185 (264)
17 PRK15387 E3 ubiquitin-protein 99.4 3.1E-12 6.7E-17 147.9 13.6 233 497-776 221-456 (788)
18 PRK15370 E3 ubiquitin-protein 99.3 2.7E-12 5.9E-17 149.3 9.1 243 500-776 180-426 (754)
19 PRK15387 E3 ubiquitin-protein 99.3 6.9E-12 1.5E-16 145.1 12.0 218 496-752 240-460 (788)
20 KOG0618 Serine/threonine phosp 99.3 1.1E-13 2.3E-18 155.0 -4.6 240 519-776 218-463 (1081)
21 cd00116 LRR_RI Leucine-rich re 99.2 1.4E-11 3.1E-16 132.3 3.7 111 659-775 189-317 (319)
22 cd00116 LRR_RI Leucine-rich re 99.1 1.4E-11 3.1E-16 132.3 2.9 228 519-748 50-318 (319)
23 KOG4237 Extracellular matrix p 99.1 8.1E-12 1.8E-16 127.7 -0.1 243 520-776 67-357 (498)
24 KOG4658 Apoptotic ATPase [Sign 99.0 1.4E-10 3E-15 137.3 3.5 242 519-778 522-783 (889)
25 KOG4237 Extracellular matrix p 98.9 5.1E-11 1.1E-15 122.0 -3.9 247 496-752 65-361 (498)
26 PRK00411 cdc6 cell division co 98.9 2.4E-07 5.3E-12 102.6 23.3 288 185-477 30-381 (394)
27 KOG0532 Leucine-rich repeat (L 98.9 7.3E-11 1.6E-15 126.1 -4.7 154 541-700 91-245 (722)
28 KOG0532 Leucine-rich repeat (L 98.9 1.4E-10 3.1E-15 123.9 -3.4 166 519-698 97-269 (722)
29 PF14580 LRR_9: Leucine-rich r 98.8 3.7E-09 7.9E-14 100.8 4.7 131 544-697 15-148 (175)
30 COG4886 Leucine-rich repeat (L 98.8 6.4E-09 1.4E-13 115.2 5.2 153 542-698 110-264 (394)
31 KOG1259 Nischarin, modulator o 98.7 1.9E-09 4.2E-14 106.5 0.6 152 519-697 181-360 (490)
32 TIGR02928 orc1/cdc6 family rep 98.7 2.1E-06 4.5E-11 94.1 23.1 112 185-301 15-139 (365)
33 PRK04841 transcriptional regul 98.7 1E-06 2.2E-11 108.8 23.0 269 185-481 14-332 (903)
34 KOG3207 Beta-tubulin folding c 98.6 8.4E-09 1.8E-13 107.5 1.2 204 567-776 117-337 (505)
35 COG4886 Leucine-rich repeat (L 98.6 3.5E-08 7.6E-13 109.3 6.3 142 552-697 97-240 (394)
36 PF14580 LRR_9: Leucine-rich r 98.6 4.5E-08 9.9E-13 93.4 5.2 124 519-650 18-149 (175)
37 cd01128 rho_factor Transcripti 98.4 3.9E-07 8.5E-12 92.6 7.2 93 208-301 16-113 (249)
38 KOG1259 Nischarin, modulator o 98.4 3.2E-08 7E-13 98.0 -1.0 125 545-674 281-410 (490)
39 PF05729 NACHT: NACHT domain 98.4 1.2E-06 2.6E-11 84.1 9.8 115 209-333 1-133 (166)
40 PF13401 AAA_22: AAA domain; P 98.4 9.1E-07 2E-11 81.3 8.3 114 208-329 4-125 (131)
41 cd00009 AAA The AAA+ (ATPases 98.4 3E-06 6.5E-11 79.2 11.6 123 188-331 1-131 (151)
42 COG2909 MalT ATP-dependent tra 98.3 2.4E-05 5.2E-10 89.1 19.2 270 194-483 24-340 (894)
43 KOG1909 Ran GTPase-activating 98.3 6.7E-08 1.4E-12 98.3 -0.8 42 736-777 269-310 (382)
44 PF13191 AAA_16: AAA ATPase do 98.3 8.1E-07 1.8E-11 87.0 6.9 46 186-231 1-47 (185)
45 KOG3207 Beta-tubulin folding c 98.3 1.4E-07 3.1E-12 98.4 1.2 175 497-674 120-312 (505)
46 TIGR03015 pepcterm_ATPase puta 98.3 1.4E-05 3E-10 83.6 15.6 97 208-312 43-145 (269)
47 PF13855 LRR_8: Leucine rich r 98.3 7.9E-07 1.7E-11 69.5 4.4 57 549-605 2-60 (61)
48 KOG0531 Protein phosphatase 1, 98.3 1.1E-07 2.3E-12 105.8 -1.4 224 542-778 89-318 (414)
49 PRK09376 rho transcription ter 98.3 1.1E-06 2.5E-11 92.8 6.3 104 196-301 158-266 (416)
50 PF13173 AAA_14: AAA domain 98.3 1.7E-06 3.8E-11 79.1 6.9 102 208-334 2-103 (128)
51 PLN03150 hypothetical protein; 98.2 1.5E-06 3.3E-11 101.2 7.4 91 549-639 419-512 (623)
52 PF13855 LRR_8: Leucine rich r 98.2 9.1E-07 2E-11 69.1 3.6 59 571-629 1-61 (61)
53 PTZ00202 tuzin; Provisional 98.2 5.2E-05 1.1E-09 80.8 17.4 101 185-299 262-369 (550)
54 KOG0531 Protein phosphatase 1, 98.2 1.7E-07 3.8E-12 104.1 -1.4 218 519-752 94-320 (414)
55 KOG1909 Ran GTPase-activating 98.2 3.7E-07 7.9E-12 93.0 0.9 220 542-776 24-281 (382)
56 TIGR00635 ruvB Holliday juncti 98.1 2.7E-05 5.8E-10 83.0 13.3 245 185-457 4-290 (305)
57 PRK00080 ruvB Holliday junctio 98.1 5.1E-05 1.1E-09 81.6 15.3 247 183-457 23-311 (328)
58 PLN03150 hypothetical protein; 98.1 6.6E-06 1.4E-10 95.9 8.9 105 521-629 419-527 (623)
59 COG1474 CDC6 Cdc6-related prot 98.1 3.2E-05 6.9E-10 83.3 12.6 111 185-301 17-133 (366)
60 PF01637 Arch_ATPase: Archaeal 98.1 1.1E-05 2.3E-10 82.3 8.6 59 187-249 1-59 (234)
61 TIGR00767 rho transcription te 98.0 1.2E-05 2.6E-10 85.7 7.8 93 208-301 168-265 (415)
62 PRK06893 DNA replication initi 98.0 1.9E-05 4.2E-10 80.0 8.6 38 208-247 39-76 (229)
63 PTZ00112 origin recognition co 98.0 5.3E-05 1.2E-09 86.9 12.7 114 185-301 755-879 (1164)
64 PRK13342 recombination factor 98.0 1.8E-05 4E-10 87.7 8.9 47 183-231 10-59 (413)
65 PF12799 LRR_4: Leucine Rich r 98.0 1.1E-05 2.4E-10 57.8 4.4 39 572-610 2-40 (44)
66 PRK12402 replication factor C 97.9 3.8E-05 8.2E-10 83.2 10.3 51 179-231 9-59 (337)
67 TIGR02903 spore_lon_C ATP-depe 97.9 0.00012 2.6E-09 84.8 14.8 147 181-330 150-334 (615)
68 KOG2120 SCF ubiquitin ligase, 97.9 3.3E-07 7.2E-12 91.1 -5.5 80 549-628 186-271 (419)
69 KOG2120 SCF ubiquitin ligase, 97.9 2.1E-07 4.5E-12 92.5 -7.1 178 572-775 186-373 (419)
70 PF12799 LRR_4: Leucine Rich r 97.9 1.5E-05 3.2E-10 57.2 3.8 40 548-587 1-40 (44)
71 PRK05564 DNA polymerase III su 97.8 0.00016 3.5E-09 77.1 12.8 125 185-331 4-134 (313)
72 PRK14961 DNA polymerase III su 97.8 0.00018 4E-09 78.2 13.0 140 181-329 12-158 (363)
73 PRK07003 DNA polymerase III su 97.8 0.00014 3.1E-09 83.1 11.6 142 181-330 12-159 (830)
74 PRK14957 DNA polymerase III su 97.8 0.00015 3.2E-09 81.9 11.4 130 181-333 12-163 (546)
75 PRK14960 DNA polymerase III su 97.8 0.00015 3.2E-09 82.1 11.3 141 181-329 11-157 (702)
76 PRK00440 rfc replication facto 97.7 0.00026 5.6E-09 76.0 12.4 131 175-328 7-140 (319)
77 PRK15386 type III secretion pr 97.7 0.00011 2.4E-09 78.8 9.1 134 544-698 48-186 (426)
78 PHA02544 44 clamp loader, smal 97.7 0.00021 4.6E-09 76.6 11.3 129 175-330 11-141 (316)
79 PRK14949 DNA polymerase III su 97.7 0.0002 4.3E-09 83.6 11.5 50 181-231 12-61 (944)
80 PLN03025 replication factor C 97.7 0.00021 4.6E-09 76.4 10.7 132 177-329 5-138 (319)
81 KOG3665 ZYG-1-like serine/thre 97.7 3.6E-05 7.7E-10 89.6 4.7 129 497-631 121-264 (699)
82 PRK06645 DNA polymerase III su 97.6 0.00039 8.4E-09 78.0 12.3 151 180-335 16-174 (507)
83 PRK11331 5-methylcytosine-spec 97.6 0.00015 3.3E-09 78.8 8.6 69 185-257 175-243 (459)
84 KOG2543 Origin recognition com 97.6 0.00025 5.5E-09 73.7 9.7 112 185-301 6-125 (438)
85 PRK13341 recombination factor 97.6 0.00015 3.3E-09 84.8 9.2 54 181-238 24-80 (725)
86 PRK12323 DNA polymerase III su 97.6 0.00035 7.6E-09 78.9 11.5 150 181-333 12-168 (700)
87 PRK14958 DNA polymerase III su 97.6 0.00036 7.9E-09 78.8 11.9 127 181-329 12-158 (509)
88 PRK04195 replication factor C 97.6 0.00025 5.3E-09 80.4 10.5 123 180-328 9-138 (482)
89 KOG2982 Uncharacterized conser 97.6 2.4E-05 5.1E-10 78.2 1.9 205 546-773 69-287 (418)
90 PRK15386 type III secretion pr 97.6 0.00026 5.6E-09 76.1 9.8 56 567-627 48-104 (426)
91 PRK14963 DNA polymerase III su 97.6 0.00041 8.9E-09 78.1 11.6 138 182-328 11-154 (504)
92 PRK14969 DNA polymerase III su 97.5 0.00078 1.7E-08 76.6 12.9 48 182-230 13-60 (527)
93 KOG3665 ZYG-1-like serine/thre 97.5 2.4E-05 5.3E-10 91.0 0.7 15 660-674 247-261 (699)
94 PRK14964 DNA polymerase III su 97.5 0.00063 1.4E-08 75.7 11.6 132 181-334 9-161 (491)
95 smart00382 AAA ATPases associa 97.5 0.00064 1.4E-08 62.7 10.1 86 208-301 2-88 (148)
96 PRK08691 DNA polymerase III su 97.5 0.0006 1.3E-08 78.0 11.5 49 181-230 12-60 (709)
97 PRK14962 DNA polymerase III su 97.5 0.00068 1.5E-08 75.7 11.7 50 181-231 10-59 (472)
98 PRK07994 DNA polymerase III su 97.5 0.0005 1.1E-08 78.9 10.7 145 181-333 12-163 (647)
99 PRK14951 DNA polymerase III su 97.5 0.00066 1.4E-08 77.7 11.7 148 181-333 12-168 (618)
100 PRK05896 DNA polymerase III su 97.5 0.00056 1.2E-08 77.4 10.7 50 180-230 11-60 (605)
101 KOG1859 Leucine-rich repeat pr 97.5 2.3E-06 5E-11 94.6 -8.1 119 550-674 166-290 (1096)
102 KOG4579 Leucine-rich repeat (L 97.5 1.7E-05 3.7E-10 70.3 -1.4 86 542-627 47-133 (177)
103 PRK14955 DNA polymerase III su 97.4 0.0012 2.7E-08 72.7 12.8 146 181-328 12-165 (397)
104 PRK14956 DNA polymerase III su 97.4 0.00067 1.5E-08 74.7 10.4 144 181-332 14-164 (484)
105 KOG4579 Leucine-rich repeat (L 97.4 4E-05 8.7E-10 68.0 0.3 81 549-629 28-112 (177)
106 TIGR02397 dnaX_nterm DNA polym 97.4 0.0018 3.8E-08 70.7 13.0 49 181-230 10-58 (355)
107 PRK08116 hypothetical protein; 97.4 0.00095 2.1E-08 69.1 10.0 102 209-329 115-220 (268)
108 KOG4341 F-box protein containi 97.4 2.2E-05 4.8E-10 82.1 -2.1 256 519-780 163-441 (483)
109 TIGR03420 DnaA_homol_Hda DnaA 97.4 0.00042 9.2E-09 70.2 7.3 59 185-247 15-75 (226)
110 PRK08118 topology modulation p 97.3 0.00011 2.4E-09 70.4 2.6 35 209-243 2-37 (167)
111 COG2256 MGS1 ATPase related to 97.3 0.00072 1.6E-08 71.1 8.4 90 207-326 47-137 (436)
112 TIGR01242 26Sp45 26S proteasom 97.3 0.00079 1.7E-08 73.5 9.1 52 185-238 122-184 (364)
113 PRK07940 DNA polymerase III su 97.3 0.0018 3.9E-08 70.7 11.8 47 184-230 4-58 (394)
114 KOG2028 ATPase related to the 97.3 0.00082 1.8E-08 69.2 8.4 98 207-330 161-261 (554)
115 KOG2227 Pre-initiation complex 97.3 0.0013 2.9E-08 70.3 10.1 113 185-301 150-266 (529)
116 PRK08727 hypothetical protein; 97.3 0.00099 2.2E-08 67.7 9.0 58 185-246 19-77 (233)
117 PF04665 Pox_A32: Poxvirus A32 97.3 0.00047 1E-08 69.1 6.3 37 208-246 13-49 (241)
118 PRK14952 DNA polymerase III su 97.3 0.0021 4.6E-08 73.3 12.4 49 181-230 9-57 (584)
119 PF00004 AAA: ATPase family as 97.3 0.001 2.2E-08 60.9 8.0 21 211-231 1-21 (132)
120 PF05496 RuvB_N: Holliday junc 97.3 0.00057 1.2E-08 67.1 6.5 54 183-238 22-78 (233)
121 PRK14970 DNA polymerase III su 97.3 0.0019 4.2E-08 70.6 11.6 49 181-230 13-61 (367)
122 KOG2004 Mitochondrial ATP-depe 97.2 0.0025 5.3E-08 71.5 11.6 108 143-255 355-480 (906)
123 TIGR00678 holB DNA polymerase 97.2 0.004 8.7E-08 61.0 12.2 41 290-330 95-136 (188)
124 PRK14953 DNA polymerase III su 97.2 0.0026 5.6E-08 71.5 12.0 49 181-230 12-60 (486)
125 PRK14954 DNA polymerase III su 97.2 0.0036 7.7E-08 72.1 13.1 152 181-333 12-171 (620)
126 KOG2982 Uncharacterized conser 97.2 0.00025 5.5E-09 71.0 3.0 84 519-604 70-156 (418)
127 KOG1859 Leucine-rich repeat pr 97.2 3E-05 6.6E-10 86.1 -3.8 125 497-629 163-291 (1096)
128 PRK14950 DNA polymerase III su 97.1 0.0035 7.6E-08 72.6 12.7 141 181-329 12-159 (585)
129 PRK09111 DNA polymerase III su 97.1 0.003 6.5E-08 72.6 11.7 148 181-333 20-176 (598)
130 PF05673 DUF815: Protein of un 97.1 0.0042 9.1E-08 61.9 11.1 120 185-334 27-155 (249)
131 PRK10536 hypothetical protein; 97.1 0.0028 6.1E-08 63.9 10.0 55 185-243 55-109 (262)
132 TIGR02881 spore_V_K stage V sp 97.1 0.0022 4.7E-08 66.5 9.3 46 185-230 6-64 (261)
133 CHL00095 clpC Clp protease ATP 97.1 0.024 5.3E-07 68.5 19.4 133 185-329 509-661 (821)
134 PRK07764 DNA polymerase III su 97.1 0.0033 7.2E-08 74.8 11.6 146 181-334 11-165 (824)
135 CHL00181 cbbX CbbX; Provisiona 97.0 0.0055 1.2E-07 64.2 11.8 45 186-230 24-81 (287)
136 COG3899 Predicted ATPase [Gene 97.0 0.014 3E-07 70.4 16.4 49 187-237 2-51 (849)
137 TIGR00602 rad24 checkpoint pro 97.0 0.0016 3.4E-08 74.9 7.9 58 174-231 73-133 (637)
138 TIGR02639 ClpA ATP-dependent C 97.0 0.0019 4.1E-08 77.0 8.7 117 185-316 454-579 (731)
139 PF00308 Bac_DnaA: Bacterial d 97.0 0.0018 3.9E-08 65.0 7.0 121 187-329 11-139 (219)
140 PRK08084 DNA replication initi 96.9 0.0026 5.6E-08 64.7 8.1 38 208-247 45-82 (235)
141 PRK08903 DnaA regulatory inact 96.9 0.0023 5E-08 64.9 7.7 48 184-231 17-65 (227)
142 TIGR02880 cbbX_cfxQ probable R 96.9 0.0071 1.5E-07 63.3 11.5 125 186-330 23-170 (284)
143 PRK14959 DNA polymerase III su 96.9 0.0051 1.1E-07 70.2 11.0 50 181-231 12-61 (624)
144 PF05621 TniB: Bacterial TniB 96.9 0.0082 1.8E-07 61.9 11.5 104 193-301 45-155 (302)
145 PRK14965 DNA polymerase III su 96.9 0.0071 1.5E-07 69.8 12.4 48 182-230 13-60 (576)
146 PRK03992 proteasome-activating 96.9 0.0043 9.3E-08 68.1 10.1 46 185-230 131-187 (389)
147 COG0542 clpA ATP-binding subun 96.9 0.032 7E-07 64.9 17.2 121 185-317 491-620 (786)
148 PRK07471 DNA polymerase III su 96.9 0.0099 2.1E-07 64.4 12.4 45 185-230 19-63 (365)
149 PRK14971 DNA polymerase III su 96.9 0.0085 1.9E-07 69.4 12.7 49 181-230 13-61 (614)
150 PRK08181 transposase; Validate 96.9 0.0022 4.7E-08 66.2 7.0 99 209-329 107-208 (269)
151 PRK05642 DNA replication initi 96.9 0.0032 6.9E-08 64.0 8.0 37 208-246 45-81 (234)
152 KOG2123 Uncharacterized conser 96.8 0.00013 2.7E-09 72.5 -2.4 99 519-624 18-124 (388)
153 cd01133 F1-ATPase_beta F1 ATP 96.8 0.0028 6.1E-08 64.9 7.2 92 208-301 69-173 (274)
154 PRK08451 DNA polymerase III su 96.8 0.012 2.6E-07 66.4 12.8 123 181-329 10-156 (535)
155 PRK14948 DNA polymerase III su 96.8 0.0097 2.1E-07 68.9 12.4 141 182-328 13-159 (620)
156 PRK07133 DNA polymerase III su 96.8 0.0068 1.5E-07 70.3 11.0 49 181-230 14-62 (725)
157 CHL00095 clpC Clp protease ATP 96.8 0.0045 9.7E-08 74.8 10.0 45 185-231 179-223 (821)
158 PRK12377 putative replication 96.8 0.0053 1.1E-07 62.5 8.9 101 208-329 101-205 (248)
159 KOG4341 F-box protein containi 96.8 0.00012 2.6E-09 76.7 -3.1 256 520-780 138-416 (483)
160 KOG1644 U2-associated snRNP A' 96.8 0.0016 3.4E-08 62.1 4.5 100 549-649 43-148 (233)
161 PRK12608 transcription termina 96.8 0.0041 8.9E-08 66.3 8.1 106 193-301 119-230 (380)
162 PRK07261 topology modulation p 96.8 0.0036 7.8E-08 60.3 7.2 65 210-301 2-67 (171)
163 COG3903 Predicted ATPase [Gene 96.8 0.0027 5.8E-08 67.3 6.6 252 207-481 13-314 (414)
164 KOG1644 U2-associated snRNP A' 96.7 0.0016 3.4E-08 62.1 4.3 85 542-626 58-149 (233)
165 TIGR03345 VI_ClpV1 type VI sec 96.7 0.004 8.7E-08 74.9 8.8 134 185-329 566-718 (852)
166 PRK06305 DNA polymerase III su 96.7 0.01 2.2E-07 66.4 11.2 48 182-230 14-61 (451)
167 TIGR03346 chaperone_ClpB ATP-d 96.7 0.01 2.2E-07 72.0 12.1 133 185-329 565-717 (852)
168 PRK10865 protein disaggregatio 96.7 0.0088 1.9E-07 72.3 11.3 133 185-329 568-720 (857)
169 TIGR00763 lon ATP-dependent pr 96.7 0.017 3.6E-07 69.4 13.7 52 185-238 320-375 (775)
170 PHA00729 NTP-binding motif con 96.7 0.0086 1.9E-07 59.5 9.1 33 196-230 7-39 (226)
171 PF13177 DNA_pol3_delta2: DNA 96.7 0.024 5.1E-07 54.0 11.9 121 189-331 1-143 (162)
172 COG0466 Lon ATP-dependent Lon 96.7 0.0091 2E-07 67.4 10.1 52 185-238 323-378 (782)
173 PRK05563 DNA polymerase III su 96.6 0.022 4.8E-07 65.4 13.6 49 181-230 12-60 (559)
174 PRK09087 hypothetical protein; 96.6 0.0074 1.6E-07 60.8 8.7 24 208-231 44-67 (226)
175 KOG2739 Leucine-rich acidic nu 96.6 0.0012 2.6E-08 65.5 2.7 82 546-629 41-128 (260)
176 PF02562 PhoH: PhoH-like prote 96.6 0.0079 1.7E-07 59.0 8.2 130 189-330 4-156 (205)
177 PRK09183 transposase/IS protei 96.6 0.0047 1E-07 63.7 7.0 24 208-231 102-125 (259)
178 PTZ00454 26S protease regulato 96.6 0.013 2.9E-07 64.1 10.9 47 185-231 145-202 (398)
179 PRK14088 dnaA chromosomal repl 96.6 0.0094 2E-07 66.5 9.8 73 208-301 130-204 (440)
180 PRK06921 hypothetical protein; 96.6 0.0034 7.3E-08 65.0 5.8 37 208-246 117-154 (266)
181 PRK09112 DNA polymerase III su 96.6 0.029 6.4E-07 60.4 13.1 139 185-328 23-179 (351)
182 COG1373 Predicted ATPase (AAA+ 96.6 0.015 3.2E-07 64.0 11.0 95 210-333 39-134 (398)
183 smart00763 AAA_PrkA PrkA AAA d 96.6 0.0019 4E-08 68.5 3.8 47 185-231 51-101 (361)
184 TIGR03689 pup_AAA proteasome A 96.5 0.0046 1E-07 69.2 7.0 47 185-231 182-239 (512)
185 PRK10865 protein disaggregatio 96.5 0.0083 1.8E-07 72.5 9.7 45 185-231 178-222 (857)
186 PRK06647 DNA polymerase III su 96.5 0.023 4.9E-07 65.2 12.7 137 182-329 13-158 (563)
187 cd01123 Rad51_DMC1_radA Rad51_ 96.5 0.0086 1.9E-07 61.0 8.4 95 206-301 17-125 (235)
188 TIGR02639 ClpA ATP-dependent C 96.5 0.0067 1.5E-07 72.4 8.7 45 185-231 182-226 (731)
189 PRK07952 DNA replication prote 96.5 0.012 2.5E-07 59.8 9.2 116 194-329 85-204 (244)
190 PF13207 AAA_17: AAA domain; P 96.5 0.0018 3.8E-08 58.4 2.9 22 210-231 1-22 (121)
191 COG0470 HolB ATPase involved i 96.5 0.021 4.6E-07 61.2 11.7 123 186-328 2-147 (325)
192 PRK10787 DNA-binding ATP-depen 96.5 0.017 3.6E-07 68.9 11.4 46 185-230 322-371 (784)
193 PRK09361 radB DNA repair and r 96.4 0.011 2.3E-07 59.9 8.5 92 206-301 21-117 (225)
194 PRK05541 adenylylsulfate kinas 96.4 0.012 2.5E-07 57.1 8.3 36 207-244 6-41 (176)
195 TIGR03345 VI_ClpV1 type VI sec 96.4 0.0073 1.6E-07 72.7 8.3 44 185-230 187-230 (852)
196 TIGR00362 DnaA chromosomal rep 96.4 0.0086 1.9E-07 66.4 8.4 100 208-329 136-241 (405)
197 PRK00149 dnaA chromosomal repl 96.4 0.0095 2.1E-07 67.0 8.7 93 187-301 125-221 (450)
198 cd01393 recA_like RecA is a b 96.4 0.026 5.6E-07 57.1 10.8 93 206-301 17-124 (226)
199 cd01120 RecA-like_NTPases RecA 96.4 0.025 5.4E-07 53.6 10.1 40 210-251 1-40 (165)
200 PRK11034 clpA ATP-dependent Cl 96.3 0.007 1.5E-07 71.5 7.2 116 185-315 458-582 (758)
201 PRK06526 transposase; Provisio 96.3 0.0059 1.3E-07 62.6 5.8 24 208-231 98-121 (254)
202 COG5238 RNA1 Ran GTPase-activa 96.3 0.00096 2.1E-08 66.1 0.0 39 660-698 211-251 (388)
203 TIGR02237 recomb_radB DNA repa 96.3 0.013 2.9E-07 58.5 8.3 92 206-301 10-107 (209)
204 COG2607 Predicted ATPase (AAA+ 96.3 0.026 5.7E-07 55.4 9.7 114 185-330 60-183 (287)
205 PRK06835 DNA replication prote 96.3 0.012 2.6E-07 62.6 8.1 36 209-246 184-219 (329)
206 COG0572 Udk Uridine kinase [Nu 96.3 0.0072 1.6E-07 59.2 5.9 79 207-292 7-85 (218)
207 PRK11889 flhF flagellar biosyn 96.3 0.045 9.8E-07 58.7 12.1 113 207-325 240-357 (436)
208 TIGR01241 FtsH_fam ATP-depende 96.2 0.033 7.2E-07 63.4 11.9 47 185-231 55-111 (495)
209 PF05659 RPW8: Arabidopsis bro 96.2 0.019 4.2E-07 53.1 8.1 109 23-159 4-114 (147)
210 PRK12422 chromosomal replicati 96.2 0.01 2.2E-07 66.0 7.5 100 208-329 141-244 (445)
211 COG1484 DnaC DNA replication p 96.2 0.012 2.6E-07 60.4 7.4 74 207-301 104-177 (254)
212 PRK14087 dnaA chromosomal repl 96.2 0.02 4.3E-07 64.0 9.7 102 208-329 141-248 (450)
213 PF13671 AAA_33: AAA domain; P 96.2 0.012 2.6E-07 54.6 6.9 21 210-230 1-21 (143)
214 PRK06696 uridine kinase; Valid 96.2 0.0059 1.3E-07 61.7 5.0 42 189-230 2-44 (223)
215 PF08423 Rad51: Rad51; InterP 96.2 0.012 2.7E-07 60.4 7.4 94 207-301 37-143 (256)
216 cd03247 ABCC_cytochrome_bd The 96.2 0.042 9.2E-07 53.2 10.8 122 208-335 28-162 (178)
217 PRK11034 clpA ATP-dependent Cl 96.2 0.014 3.1E-07 68.9 8.5 44 185-230 186-229 (758)
218 PRK15455 PrkA family serine pr 96.2 0.0054 1.2E-07 68.4 4.6 46 185-230 76-125 (644)
219 cd03214 ABC_Iron-Siderophores_ 96.2 0.05 1.1E-06 52.9 11.1 122 208-333 25-161 (180)
220 cd03223 ABCD_peroxisomal_ALDP 96.2 0.056 1.2E-06 51.7 11.2 117 208-335 27-153 (166)
221 TIGR02640 gas_vesic_GvpN gas v 96.1 0.033 7.2E-07 57.7 10.3 55 192-255 9-63 (262)
222 cd01131 PilT Pilus retraction 96.1 0.015 3.2E-07 57.6 7.3 112 209-335 2-114 (198)
223 cd03238 ABC_UvrA The excision 96.1 0.044 9.6E-07 52.8 10.4 118 208-335 21-154 (176)
224 KOG0989 Replication factor C, 96.1 0.017 3.8E-07 58.7 7.7 132 180-328 31-167 (346)
225 PRK07667 uridine kinase; Provi 96.1 0.0075 1.6E-07 59.4 5.2 37 194-230 3-39 (193)
226 CHL00176 ftsH cell division pr 96.1 0.023 4.9E-07 66.0 9.8 48 184-231 182-239 (638)
227 PRK08939 primosomal protein Dn 96.1 0.021 4.5E-07 60.3 8.8 119 189-329 135-260 (306)
228 TIGR03346 chaperone_ClpB ATP-d 96.1 0.011 2.5E-07 71.6 7.6 45 185-231 173-217 (852)
229 PRK04296 thymidine kinase; Pro 96.1 0.01 2.2E-07 58.2 5.9 113 209-330 3-116 (190)
230 COG2255 RuvB Holliday junction 96.1 0.0052 1.1E-07 61.7 3.6 48 184-231 25-75 (332)
231 PF00485 PRK: Phosphoribulokin 96.1 0.032 6.8E-07 55.0 9.3 83 210-295 1-87 (194)
232 PRK14086 dnaA chromosomal repl 96.0 0.021 4.6E-07 64.9 8.5 100 208-329 314-419 (617)
233 PRK06620 hypothetical protein; 96.0 0.014 3.1E-07 58.3 6.4 23 209-231 45-67 (214)
234 TIGR03499 FlhF flagellar biosy 96.0 0.027 5.8E-07 58.9 8.7 87 207-300 193-281 (282)
235 PRK08233 hypothetical protein; 95.9 0.026 5.7E-07 54.8 8.0 24 208-231 3-26 (182)
236 cd00561 CobA_CobO_BtuR ATP:cor 95.9 0.037 8E-07 52.0 8.5 119 209-330 3-138 (159)
237 cd03221 ABCF_EF-3 ABCF_EF-3 E 95.9 0.064 1.4E-06 49.9 10.1 105 208-335 26-132 (144)
238 cd03228 ABCC_MRP_Like The MRP 95.9 0.048 1E-06 52.5 9.6 121 208-335 28-160 (171)
239 PRK09270 nucleoside triphospha 95.9 0.041 8.8E-07 55.8 9.5 25 206-230 31-55 (229)
240 PF01695 IstB_IS21: IstB-like 95.9 0.0052 1.1E-07 59.5 2.7 24 208-231 47-70 (178)
241 cd03216 ABC_Carb_Monos_I This 95.9 0.035 7.5E-07 53.0 8.4 116 208-334 26-146 (163)
242 PF00448 SRP54: SRP54-type pro 95.9 0.02 4.3E-07 56.3 6.8 57 208-266 1-58 (196)
243 TIGR02238 recomb_DMC1 meiotic 95.9 0.039 8.4E-07 58.4 9.4 95 206-301 94-201 (313)
244 PF14532 Sigma54_activ_2: Sigm 95.8 0.0099 2.1E-07 55.0 4.2 44 188-231 1-44 (138)
245 PRK04301 radA DNA repair and r 95.8 0.058 1.3E-06 57.6 10.6 58 206-264 100-161 (317)
246 PLN03187 meiotic recombination 95.8 0.046 1E-06 58.4 9.4 95 206-301 124-231 (344)
247 KOG0733 Nuclear AAA ATPase (VC 95.8 0.036 7.8E-07 61.4 8.6 94 184-301 189-292 (802)
248 TIGR01243 CDC48 AAA family ATP 95.7 0.029 6.3E-07 67.2 8.8 46 185-230 178-234 (733)
249 COG4608 AppF ABC-type oligopep 95.7 0.05 1.1E-06 55.0 9.0 126 208-338 39-178 (268)
250 PTZ00301 uridine kinase; Provi 95.7 0.017 3.8E-07 57.3 5.6 23 208-230 3-25 (210)
251 PTZ00361 26 proteosome regulat 95.7 0.015 3.3E-07 64.1 5.7 53 184-238 182-245 (438)
252 PRK08058 DNA polymerase III su 95.7 0.089 1.9E-06 56.4 11.4 137 185-329 5-149 (329)
253 TIGR02858 spore_III_AA stage I 95.7 0.19 4.1E-06 52.0 13.3 134 193-335 97-234 (270)
254 cd01394 radB RadB. The archaea 95.7 0.048 1E-06 54.8 8.9 44 206-251 17-60 (218)
255 TIGR02239 recomb_RAD51 DNA rep 95.7 0.054 1.2E-06 57.5 9.5 104 197-301 85-201 (316)
256 cd00983 recA RecA is a bacter 95.6 0.024 5.1E-07 59.9 6.6 89 206-301 53-143 (325)
257 KOG2123 Uncharacterized conser 95.6 0.0016 3.6E-08 64.8 -1.9 81 545-627 16-98 (388)
258 cd03222 ABC_RNaseL_inhibitor T 95.6 0.087 1.9E-06 50.8 10.0 102 208-334 25-136 (177)
259 PRK07399 DNA polymerase III su 95.6 0.077 1.7E-06 56.3 10.5 146 185-334 4-168 (314)
260 COG1618 Predicted nucleotide k 95.6 0.0099 2.1E-07 54.7 3.2 31 208-240 5-36 (179)
261 cd03246 ABCC_Protease_Secretio 95.6 0.066 1.4E-06 51.6 9.1 121 208-335 28-161 (173)
262 COG2884 FtsE Predicted ATPase 95.6 0.1 2.2E-06 49.7 9.7 128 208-338 28-205 (223)
263 TIGR00064 ftsY signal recognit 95.5 0.078 1.7E-06 55.0 10.0 91 207-301 71-164 (272)
264 COG5238 RNA1 Ran GTPase-activa 95.5 0.0063 1.4E-07 60.5 1.7 86 545-630 27-133 (388)
265 PF07693 KAP_NTPase: KAP famil 95.5 0.087 1.9E-06 56.6 10.8 41 191-231 2-43 (325)
266 cd03115 SRP The signal recogni 95.5 0.091 2E-06 50.6 9.8 21 210-230 2-22 (173)
267 PRK15429 formate hydrogenlyase 95.5 0.23 5E-06 59.1 15.0 47 185-231 376-422 (686)
268 PRK14974 cell division protein 95.4 0.094 2E-06 55.9 10.4 115 207-326 139-260 (336)
269 KOG1514 Origin recognition com 95.4 0.14 2.9E-06 58.1 11.8 135 185-327 396-546 (767)
270 PRK06002 fliI flagellum-specif 95.4 0.06 1.3E-06 59.2 9.0 91 208-301 165-264 (450)
271 TIGR01359 UMP_CMP_kin_fam UMP- 95.4 0.054 1.2E-06 52.7 8.0 21 210-230 1-21 (183)
272 PRK06995 flhF flagellar biosyn 95.4 0.81 1.8E-05 51.2 17.9 59 208-266 256-315 (484)
273 COG0593 DnaA ATPase involved i 95.4 0.047 1E-06 59.1 8.0 124 185-329 88-217 (408)
274 COG0468 RecA RecA/RadA recombi 95.4 0.089 1.9E-06 54.3 9.6 90 206-301 58-151 (279)
275 KOG0744 AAA+-type ATPase [Post 95.4 0.045 9.7E-07 56.1 7.2 80 208-301 177-260 (423)
276 PRK04040 adenylate kinase; Pro 95.4 0.04 8.7E-07 53.8 6.7 23 208-230 2-24 (188)
277 COG4618 ArpD ABC-type protease 95.3 0.046 1E-06 59.5 7.6 23 208-230 362-384 (580)
278 PRK14722 flhF flagellar biosyn 95.3 0.11 2.4E-06 56.0 10.5 86 208-301 137-225 (374)
279 cd03230 ABC_DR_subfamily_A Thi 95.3 0.087 1.9E-06 50.8 9.0 122 208-335 26-160 (173)
280 KOG2739 Leucine-rich acidic nu 95.3 0.011 2.3E-07 59.0 2.6 84 542-625 59-151 (260)
281 COG1136 SalX ABC-type antimicr 95.3 0.2 4.3E-06 49.9 11.4 130 208-339 31-212 (226)
282 KOG0735 AAA+-type ATPase [Post 95.3 0.033 7.1E-07 62.8 6.4 72 208-301 431-504 (952)
283 COG0541 Ffh Signal recognition 95.3 1.9 4E-05 46.8 19.2 57 207-266 99-157 (451)
284 TIGR02012 tigrfam_recA protein 95.3 0.039 8.5E-07 58.2 6.8 89 206-301 53-143 (321)
285 COG1419 FlhF Flagellar GTP-bin 95.3 0.099 2.1E-06 56.0 9.8 102 207-315 202-308 (407)
286 PRK13695 putative NTPase; Prov 95.3 0.027 5.8E-07 54.4 5.2 22 210-231 2-23 (174)
287 PRK11608 pspF phage shock prot 95.3 0.048 1E-06 58.4 7.6 46 185-230 6-51 (326)
288 PRK08972 fliI flagellum-specif 95.2 0.058 1.3E-06 59.0 8.1 90 208-301 162-262 (444)
289 PRK05707 DNA polymerase III su 95.2 0.2 4.3E-06 53.5 12.1 41 290-330 105-146 (328)
290 cd03229 ABC_Class3 This class 95.2 0.084 1.8E-06 51.1 8.6 23 208-230 26-48 (178)
291 cd02025 PanK Pantothenate kina 95.2 0.065 1.4E-06 53.8 8.0 74 210-289 1-76 (220)
292 PF13238 AAA_18: AAA domain; P 95.2 0.013 2.7E-07 53.3 2.6 21 211-231 1-21 (129)
293 TIGR00959 ffh signal recogniti 95.2 0.1 2.3E-06 57.5 10.2 93 207-301 98-192 (428)
294 PLN00020 ribulose bisphosphate 95.2 0.034 7.3E-07 58.9 6.0 26 206-231 146-171 (413)
295 PRK08927 fliI flagellum-specif 95.2 0.056 1.2E-06 59.3 7.9 90 208-301 158-258 (442)
296 KOG0991 Replication factor C, 95.2 0.025 5.5E-07 55.1 4.5 54 175-230 17-70 (333)
297 PLN03186 DNA repair protein RA 95.2 0.12 2.7E-06 55.2 10.2 102 199-301 114-228 (342)
298 PRK12723 flagellar biosynthesi 95.2 0.22 4.8E-06 54.2 12.3 104 207-316 173-282 (388)
299 PRK06547 hypothetical protein; 95.1 0.03 6.4E-07 53.8 4.9 25 207-231 14-38 (172)
300 PRK00771 signal recognition pa 95.1 0.23 4.9E-06 55.0 12.4 91 207-301 94-185 (437)
301 PRK13531 regulatory ATPase Rav 95.1 0.045 9.8E-07 60.4 6.8 40 187-230 22-61 (498)
302 cd01135 V_A-ATPase_B V/A-type 95.1 0.07 1.5E-06 54.6 7.7 104 208-311 69-186 (276)
303 COG1875 NYN ribonuclease and A 95.1 0.058 1.3E-06 56.4 7.0 135 186-328 222-386 (436)
304 cd00267 ABC_ATPase ABC (ATP-bi 95.0 0.065 1.4E-06 50.7 7.0 119 208-336 25-146 (157)
305 PTZ00035 Rad51 protein; Provis 95.0 0.15 3.3E-06 54.6 10.5 102 199-301 109-223 (337)
306 TIGR01425 SRP54_euk signal rec 95.0 0.82 1.8E-05 50.3 16.2 24 207-230 99-122 (429)
307 PRK05480 uridine/cytidine kina 95.0 0.02 4.3E-07 57.2 3.6 25 207-231 5-29 (209)
308 PF13604 AAA_30: AAA domain; P 95.0 0.089 1.9E-06 51.8 8.1 107 208-330 18-131 (196)
309 TIGR00235 udk uridine kinase. 95.0 0.02 4.2E-07 57.1 3.5 24 207-230 5-28 (207)
310 PRK10867 signal recognition pa 95.0 0.13 2.8E-06 56.8 10.0 92 207-301 99-193 (433)
311 PRK09354 recA recombinase A; P 94.9 0.1 2.2E-06 55.6 8.7 89 206-301 58-148 (349)
312 KOG2228 Origin recognition com 94.9 0.075 1.6E-06 54.9 7.3 142 185-329 24-181 (408)
313 cd02019 NK Nucleoside/nucleoti 94.9 0.019 4.2E-07 45.8 2.5 22 210-231 1-22 (69)
314 cd03281 ABC_MSH5_euk MutS5 hom 94.9 0.051 1.1E-06 54.3 6.1 124 208-337 29-161 (213)
315 cd03215 ABC_Carb_Monos_II This 94.9 0.14 3.1E-06 49.7 9.2 24 208-231 26-49 (182)
316 COG1121 ZnuC ABC-type Mn/Zn tr 94.9 0.13 2.7E-06 52.1 8.7 126 208-335 30-204 (254)
317 KOG0924 mRNA splicing factor A 94.8 0.12 2.6E-06 57.8 9.1 137 194-339 361-522 (1042)
318 cd03278 ABC_SMC_barmotin Barmo 94.8 0.32 6.9E-06 48.0 11.5 20 210-229 24-43 (197)
319 cd03217 ABC_FeS_Assembly ABC-t 94.8 0.18 3.8E-06 50.0 9.7 24 208-231 26-49 (200)
320 PRK00889 adenylylsulfate kinas 94.8 0.19 4.1E-06 48.5 9.7 24 208-231 4-27 (175)
321 PF00560 LRR_1: Leucine Rich R 94.8 0.013 2.8E-07 35.0 0.9 14 574-587 3-16 (22)
322 cd03235 ABC_Metallic_Cations A 94.8 0.27 5.9E-06 49.1 11.2 24 208-231 25-48 (213)
323 PRK08149 ATP synthase SpaL; Va 94.8 0.089 1.9E-06 57.7 8.0 90 208-301 151-251 (428)
324 TIGR00554 panK_bact pantothena 94.8 0.12 2.6E-06 53.9 8.6 80 207-292 61-142 (290)
325 KOG0734 AAA+-type ATPase conta 94.8 0.13 2.7E-06 56.4 8.8 50 184-233 303-362 (752)
326 COG0563 Adk Adenylate kinase a 94.8 0.078 1.7E-06 51.2 6.8 96 210-315 2-101 (178)
327 COG1120 FepC ABC-type cobalami 94.8 0.15 3.4E-06 51.7 9.1 23 208-230 28-50 (258)
328 PRK12724 flagellar biosynthesi 94.8 0.075 1.6E-06 57.8 7.3 23 208-230 223-245 (432)
329 cd02027 APSK Adenosine 5'-phos 94.8 0.24 5.2E-06 46.4 9.9 21 210-230 1-21 (149)
330 cd02028 UMPK_like Uridine mono 94.7 0.057 1.2E-06 52.3 5.9 21 210-230 1-21 (179)
331 PF00560 LRR_1: Leucine Rich R 94.7 0.014 3E-07 34.8 1.0 22 549-570 1-22 (22)
332 PRK10463 hydrogenase nickel in 94.7 0.1 2.2E-06 54.1 7.8 90 206-301 102-194 (290)
333 cd03369 ABCC_NFT1 Domain 2 of 94.7 0.41 9E-06 47.6 12.2 23 208-230 34-56 (207)
334 cd03263 ABC_subfamily_A The AB 94.7 0.3 6.5E-06 49.1 11.3 24 208-231 28-51 (220)
335 PRK06762 hypothetical protein; 94.7 0.026 5.5E-07 54.0 3.3 23 208-230 2-24 (166)
336 PRK05439 pantothenate kinase; 94.7 0.18 3.9E-06 53.0 9.7 81 206-292 84-166 (311)
337 PRK12727 flagellar biosynthesi 94.7 0.086 1.9E-06 58.9 7.6 88 208-301 350-438 (559)
338 PRK13540 cytochrome c biogenes 94.7 0.28 6.1E-06 48.5 10.8 24 208-231 27-50 (200)
339 PRK12597 F0F1 ATP synthase sub 94.6 0.076 1.6E-06 58.8 7.1 93 208-301 143-247 (461)
340 PF12061 DUF3542: Protein of u 94.6 0.088 1.9E-06 53.5 6.8 85 58-157 315-402 (402)
341 PRK06067 flagellar accessory p 94.6 0.19 4.1E-06 51.1 9.7 91 206-301 23-130 (234)
342 PRK12726 flagellar biosynthesi 94.6 0.35 7.6E-06 51.9 11.7 103 207-315 205-312 (407)
343 KOG1947 Leucine rich repeat pr 94.6 0.0059 1.3E-07 69.4 -1.6 238 519-779 187-441 (482)
344 PRK06936 type III secretion sy 94.6 0.11 2.4E-06 57.0 8.1 90 208-301 162-262 (439)
345 TIGR02236 recomb_radA DNA repa 94.6 0.17 3.6E-06 54.0 9.5 58 206-264 93-154 (310)
346 PRK09280 F0F1 ATP synthase sub 94.6 0.077 1.7E-06 58.5 6.9 93 208-301 144-248 (463)
347 PRK10247 putative ABC transpor 94.6 0.29 6.4E-06 49.4 10.8 24 208-231 33-56 (225)
348 PRK14527 adenylate kinase; Pro 94.6 0.087 1.9E-06 51.7 6.7 25 207-231 5-29 (191)
349 PRK03839 putative kinase; Prov 94.5 0.027 5.8E-07 54.8 2.9 22 210-231 2-23 (180)
350 KOG0741 AAA+-type ATPase [Post 94.5 0.37 8E-06 52.8 11.4 106 206-339 536-660 (744)
351 cd03244 ABCC_MRP_domain2 Domai 94.5 0.26 5.7E-06 49.5 10.2 24 208-231 30-53 (221)
352 PRK13543 cytochrome c biogenes 94.5 0.4 8.7E-06 48.0 11.4 24 208-231 37-60 (214)
353 cd01129 PulE-GspE PulE/GspE Th 94.4 0.22 4.8E-06 51.5 9.7 106 189-311 63-168 (264)
354 PRK05022 anaerobic nitric oxid 94.4 0.1 2.3E-06 59.6 8.0 47 185-231 187-233 (509)
355 cd01122 GP4d_helicase GP4d_hel 94.4 0.28 6.1E-06 51.1 10.6 53 208-263 30-82 (271)
356 PRK05703 flhF flagellar biosyn 94.4 0.1 2.2E-06 57.8 7.4 88 208-301 221-309 (424)
357 PRK06793 fliI flagellum-specif 94.4 0.26 5.7E-06 54.1 10.4 127 208-338 156-294 (432)
358 cd02029 PRK_like Phosphoribulo 94.4 0.13 2.8E-06 52.4 7.4 81 210-292 1-85 (277)
359 PRK11247 ssuB aliphatic sulfon 94.3 0.5 1.1E-05 48.7 12.1 24 208-231 38-61 (257)
360 TIGR03574 selen_PSTK L-seryl-t 94.3 0.14 3E-06 52.6 8.0 20 211-230 2-21 (249)
361 TIGR00150 HI0065_YjeE ATPase, 94.3 0.059 1.3E-06 49.0 4.5 40 193-232 7-46 (133)
362 TIGR02974 phageshock_pspF psp 94.3 0.13 2.8E-06 55.1 7.9 44 187-230 1-44 (329)
363 cd02021 GntK Gluconate kinase 94.3 0.34 7.3E-06 45.3 9.9 22 210-231 1-22 (150)
364 KOG0473 Leucine-rich repeat pr 94.3 0.0014 3E-08 63.6 -6.3 88 542-629 36-123 (326)
365 TIGR02788 VirB11 P-type DNA tr 94.3 0.1 2.2E-06 55.4 7.0 115 208-335 144-258 (308)
366 PF00154 RecA: recA bacterial 94.3 0.077 1.7E-06 55.9 5.9 88 207-301 52-141 (322)
367 cd03282 ABC_MSH4_euk MutS4 hom 94.3 0.094 2E-06 51.9 6.2 123 208-338 29-159 (204)
368 cd01136 ATPase_flagellum-secre 94.3 0.17 3.6E-06 53.7 8.3 90 208-301 69-169 (326)
369 cd01132 F1_ATPase_alpha F1 ATP 94.2 0.12 2.6E-06 53.0 7.1 103 208-314 69-184 (274)
370 cd01130 VirB11-like_ATPase Typ 94.2 0.058 1.3E-06 52.7 4.7 96 208-312 25-120 (186)
371 TIGR01360 aden_kin_iso1 adenyl 94.2 0.037 8.1E-07 54.1 3.3 24 207-230 2-25 (188)
372 TIGR03498 FliI_clade3 flagella 94.2 0.11 2.3E-06 57.1 7.0 90 208-301 140-240 (418)
373 cd02023 UMPK Uridine monophosp 94.2 0.029 6.4E-07 55.4 2.5 21 210-230 1-21 (198)
374 PF12775 AAA_7: P-loop contain 94.2 0.082 1.8E-06 54.9 5.9 89 194-301 22-110 (272)
375 PRK00625 shikimate kinase; Pro 94.2 0.033 7.1E-07 53.5 2.8 21 210-230 2-22 (173)
376 COG0542 clpA ATP-binding subun 94.2 0.075 1.6E-06 61.9 6.1 44 185-230 170-213 (786)
377 PRK00279 adk adenylate kinase; 94.2 0.37 8.1E-06 48.2 10.5 21 210-230 2-22 (215)
378 PTZ00185 ATPase alpha subunit; 94.2 0.2 4.2E-06 55.6 8.9 94 208-301 189-299 (574)
379 TIGR01817 nifA Nif-specific re 94.2 0.095 2.1E-06 60.4 7.0 47 185-231 196-242 (534)
380 cd03213 ABCG_EPDR ABCG transpo 94.2 0.31 6.7E-06 47.9 9.7 24 208-231 35-58 (194)
381 TIGR03740 galliderm_ABC gallid 94.2 0.46 1E-05 47.8 11.2 24 208-231 26-49 (223)
382 cd03283 ABC_MutS-like MutS-lik 94.2 0.22 4.9E-06 49.1 8.7 22 209-230 26-47 (199)
383 PF00006 ATP-synt_ab: ATP synt 94.1 0.073 1.6E-06 52.9 5.1 87 209-301 16-115 (215)
384 PRK09544 znuC high-affinity zi 94.1 0.38 8.2E-06 49.5 10.6 24 208-231 30-53 (251)
385 cd03253 ABCC_ATM1_transporter 94.1 0.56 1.2E-05 47.7 11.9 24 208-231 27-50 (236)
386 PRK05688 fliI flagellum-specif 94.1 0.16 3.4E-06 56.1 8.0 90 208-301 168-268 (451)
387 PRK07594 type III secretion sy 94.1 0.14 3.1E-06 56.2 7.7 90 208-301 155-255 (433)
388 TIGR01243 CDC48 AAA family ATP 94.1 0.15 3.3E-06 61.2 8.7 47 185-231 453-510 (733)
389 cd03236 ABC_RNaseL_inhibitor_d 94.1 0.46 9.9E-06 48.9 11.1 24 208-231 26-49 (255)
390 cd03254 ABCC_Glucan_exporter_l 94.1 0.72 1.6E-05 46.6 12.5 24 208-231 29-52 (229)
391 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 94.1 0.4 8.6E-06 48.4 10.5 24 208-231 48-71 (224)
392 PF07728 AAA_5: AAA domain (dy 94.0 0.069 1.5E-06 49.3 4.6 41 211-257 2-43 (139)
393 cd02024 NRK1 Nicotinamide ribo 94.0 0.034 7.3E-07 54.1 2.5 22 210-231 1-22 (187)
394 TIGR03522 GldA_ABC_ATP gliding 94.0 0.48 1E-05 50.2 11.5 24 208-231 28-51 (301)
395 TIGR03877 thermo_KaiC_1 KaiC d 94.0 0.34 7.3E-06 49.4 9.8 55 200-258 13-67 (237)
396 PRK12678 transcription termina 94.0 0.089 1.9E-06 58.8 5.8 103 196-301 405-513 (672)
397 PRK05342 clpX ATP-dependent pr 94.0 0.13 2.8E-06 56.7 7.1 46 185-230 71-130 (412)
398 TIGR01040 V-ATPase_V1_B V-type 93.9 0.15 3.3E-06 55.9 7.5 94 208-301 141-257 (466)
399 cd03249 ABC_MTABC3_MDL1_MDL2 M 93.9 0.42 9.1E-06 48.7 10.5 24 208-231 29-52 (238)
400 PF08433 KTI12: Chromatin asso 93.9 0.042 9.1E-07 56.8 3.1 23 209-231 2-24 (270)
401 KOG1947 Leucine rich repeat pr 93.9 0.018 3.9E-07 65.5 0.4 198 570-783 187-419 (482)
402 TIGR01041 ATP_syn_B_arch ATP s 93.9 0.15 3.2E-06 56.5 7.5 94 208-301 141-248 (458)
403 TIGR03305 alt_F1F0_F1_bet alte 93.9 0.098 2.1E-06 57.6 6.1 93 208-301 138-242 (449)
404 PRK14721 flhF flagellar biosyn 93.9 0.25 5.4E-06 54.2 9.2 23 208-230 191-213 (420)
405 TIGR01420 pilT_fam pilus retra 93.9 0.17 3.7E-06 54.6 7.9 113 208-334 122-234 (343)
406 CHL00195 ycf46 Ycf46; Provisio 93.9 0.26 5.7E-06 55.4 9.5 46 185-230 228-281 (489)
407 TIGR02322 phosphon_PhnN phosph 93.9 0.045 9.7E-07 53.1 3.1 23 209-231 2-24 (179)
408 COG1428 Deoxynucleoside kinase 93.9 0.044 9.5E-07 53.2 2.9 24 208-231 4-27 (216)
409 PF07726 AAA_3: ATPase family 93.9 0.035 7.7E-07 49.6 2.1 28 211-240 2-29 (131)
410 COG1102 Cmk Cytidylate kinase 93.9 0.072 1.6E-06 49.2 4.1 45 210-267 2-46 (179)
411 PRK05922 type III secretion sy 93.9 0.21 4.6E-06 54.8 8.5 90 208-301 157-257 (434)
412 cd03243 ABC_MutS_homologs The 93.8 0.061 1.3E-06 53.4 4.0 22 209-230 30-51 (202)
413 PRK15453 phosphoribulokinase; 93.8 0.29 6.3E-06 50.3 8.8 81 207-290 4-89 (290)
414 PRK09099 type III secretion sy 93.8 0.21 4.6E-06 55.1 8.4 90 208-301 163-263 (441)
415 KOG1051 Chaperone HSP104 and r 93.8 0.33 7.2E-06 57.6 10.4 116 185-315 562-685 (898)
416 TIGR03771 anch_rpt_ABC anchore 93.8 0.57 1.2E-05 47.2 11.0 24 208-231 6-29 (223)
417 PLN02318 phosphoribulokinase/u 93.8 0.075 1.6E-06 59.9 4.9 34 197-230 54-87 (656)
418 PRK14723 flhF flagellar biosyn 93.8 0.24 5.1E-06 58.2 9.1 88 208-301 185-273 (767)
419 PTZ00088 adenylate kinase 1; P 93.8 0.1 2.2E-06 52.6 5.5 21 210-230 8-28 (229)
420 TIGR00708 cobA cob(I)alamin ad 93.8 0.41 8.9E-06 45.6 9.2 120 208-330 5-140 (173)
421 PF00158 Sigma54_activat: Sigm 93.8 0.19 4.1E-06 48.0 7.1 44 187-230 1-44 (168)
422 cd03233 ABC_PDR_domain1 The pl 93.8 0.49 1.1E-05 46.9 10.3 24 208-231 33-56 (202)
423 PRK07196 fliI flagellum-specif 93.7 0.18 4E-06 55.4 7.8 90 208-301 155-255 (434)
424 PF01583 APS_kinase: Adenylyls 93.7 0.068 1.5E-06 50.0 3.8 36 208-245 2-37 (156)
425 PRK15064 ABC transporter ATP-b 93.7 0.75 1.6E-05 53.1 13.3 24 208-231 27-50 (530)
426 PRK10751 molybdopterin-guanine 93.7 0.061 1.3E-06 51.3 3.5 24 207-230 5-28 (173)
427 KOG1969 DNA replication checkp 93.7 0.16 3.5E-06 57.7 7.2 73 207-301 325-397 (877)
428 PRK00131 aroK shikimate kinase 93.7 0.052 1.1E-06 52.2 3.1 23 208-230 4-26 (175)
429 COG1222 RPT1 ATP-dependent 26S 93.6 0.091 2E-06 54.9 4.9 53 184-238 150-213 (406)
430 PRK13634 cbiO cobalt transport 93.6 0.58 1.3E-05 49.3 11.2 24 208-231 33-56 (290)
431 PRK13643 cbiO cobalt transport 93.6 0.74 1.6E-05 48.4 12.0 24 208-231 32-55 (288)
432 PRK13947 shikimate kinase; Pro 93.6 0.049 1.1E-06 52.4 2.7 21 210-230 3-23 (171)
433 KOG3347 Predicted nucleotide k 93.6 0.099 2.1E-06 47.5 4.3 35 208-249 7-41 (176)
434 COG1124 DppF ABC-type dipeptid 93.6 0.086 1.9E-06 52.3 4.3 23 208-230 33-55 (252)
435 TIGR03263 guanyl_kin guanylate 93.6 0.056 1.2E-06 52.5 3.1 22 209-230 2-23 (180)
436 PF08298 AAA_PrkA: PrkA AAA do 93.6 0.081 1.8E-06 55.8 4.4 46 185-230 61-110 (358)
437 PRK14528 adenylate kinase; Pro 93.5 0.18 3.9E-06 49.2 6.7 23 209-231 2-24 (186)
438 PRK08769 DNA polymerase III su 93.5 0.94 2E-05 48.0 12.4 45 290-334 112-158 (319)
439 PRK14738 gmk guanylate kinase; 93.5 0.064 1.4E-06 53.3 3.5 30 201-230 6-35 (206)
440 TIGR00390 hslU ATP-dependent p 93.5 0.2 4.3E-06 54.4 7.3 77 185-263 12-104 (441)
441 PRK06217 hypothetical protein; 93.5 0.052 1.1E-06 52.9 2.8 23 209-231 2-24 (183)
442 cd01134 V_A-ATPase_A V/A-type 93.5 0.28 6.1E-06 51.9 8.3 59 196-259 146-205 (369)
443 PF00625 Guanylate_kin: Guanyl 93.5 0.081 1.8E-06 51.5 4.1 36 208-245 2-37 (183)
444 cd00071 GMPK Guanosine monopho 93.4 0.063 1.4E-06 49.5 3.1 21 210-230 1-21 (137)
445 TIGR03575 selen_PSTK_euk L-ser 93.4 0.59 1.3E-05 49.9 10.7 21 211-231 2-22 (340)
446 KOG1532 GTPase XAB1, interacts 93.4 0.06 1.3E-06 53.8 2.9 58 207-266 18-86 (366)
447 PF00910 RNA_helicase: RNA hel 93.4 0.047 1E-06 47.9 2.1 21 211-231 1-21 (107)
448 TIGR03497 FliI_clade2 flagella 93.4 0.24 5.2E-06 54.4 8.0 90 208-301 137-237 (413)
449 PRK07721 fliI flagellum-specif 93.4 0.24 5.3E-06 54.8 8.0 25 207-231 157-181 (438)
450 PRK13949 shikimate kinase; Pro 93.4 0.058 1.3E-06 51.7 2.8 23 209-231 2-24 (169)
451 TIGR01039 atpD ATP synthase, F 93.4 0.18 3.8E-06 55.6 6.8 93 208-301 143-247 (461)
452 cd02020 CMPK Cytidine monophos 93.4 0.053 1.1E-06 50.5 2.5 21 210-230 1-21 (147)
453 smart00534 MUTSac ATPase domai 93.4 0.052 1.1E-06 53.0 2.5 121 210-337 1-129 (185)
454 cd01428 ADK Adenylate kinase ( 93.4 0.38 8.2E-06 47.2 8.8 21 211-231 2-22 (194)
455 CHL00081 chlI Mg-protoporyphyr 93.3 0.074 1.6E-06 56.9 3.8 48 181-230 13-60 (350)
456 PRK05201 hslU ATP-dependent pr 93.3 0.17 3.7E-06 54.9 6.5 77 185-263 15-107 (443)
457 PRK10416 signal recognition pa 93.3 0.32 7E-06 51.6 8.6 25 207-231 113-137 (318)
458 PRK13765 ATP-dependent proteas 93.3 0.12 2.7E-06 59.8 5.7 76 185-266 31-106 (637)
459 PF03205 MobB: Molybdopterin g 93.3 0.065 1.4E-06 49.5 2.9 38 209-248 1-39 (140)
460 COG2842 Uncharacterized ATPase 93.3 0.5 1.1E-05 48.5 9.3 121 185-318 72-193 (297)
461 TIGR02030 BchI-ChlI magnesium 93.3 0.1 2.2E-06 55.8 4.7 46 183-230 2-47 (337)
462 TIGR03411 urea_trans_UrtD urea 93.3 0.88 1.9E-05 46.5 11.6 24 208-231 28-51 (242)
463 cd00227 CPT Chloramphenicol (C 93.3 0.063 1.4E-06 51.9 2.9 23 209-231 3-25 (175)
464 COG0488 Uup ATPase components 93.2 1.6 3.4E-05 49.7 14.4 130 207-338 347-504 (530)
465 COG0488 Uup ATPase components 93.2 0.86 1.9E-05 51.8 12.2 60 278-339 158-219 (530)
466 PRK11147 ABC transporter ATPas 93.2 0.96 2.1E-05 53.4 13.2 24 208-231 29-52 (635)
467 TIGR03496 FliI_clade1 flagella 93.2 0.25 5.4E-06 54.2 7.6 90 208-301 137-237 (411)
468 PRK08472 fliI flagellum-specif 93.2 0.29 6.3E-06 53.8 8.1 97 208-311 157-266 (434)
469 PRK08533 flagellar accessory p 93.1 0.44 9.4E-06 48.3 8.9 49 207-259 23-71 (230)
470 COG1936 Predicted nucleotide k 93.1 0.071 1.5E-06 50.0 2.8 20 210-229 2-21 (180)
471 COG1223 Predicted ATPase (AAA+ 93.1 0.12 2.6E-06 51.4 4.5 47 185-231 121-174 (368)
472 PRK09519 recA DNA recombinatio 93.1 0.33 7.3E-06 57.1 8.9 89 206-301 58-148 (790)
473 KOG0736 Peroxisome assembly fa 93.1 0.48 1.1E-05 54.4 9.7 93 185-301 672-774 (953)
474 PRK03846 adenylylsulfate kinas 93.0 0.087 1.9E-06 52.0 3.6 24 207-230 23-46 (198)
475 PRK11388 DNA-binding transcrip 93.0 0.39 8.4E-06 56.8 9.6 48 184-231 324-371 (638)
476 PRK00300 gmk guanylate kinase; 93.0 0.073 1.6E-06 52.9 3.0 24 208-231 5-28 (205)
477 PRK13409 putative ATPase RIL; 92.9 0.67 1.5E-05 53.9 11.2 24 208-231 365-388 (590)
478 KOG0739 AAA+-type ATPase [Post 92.9 0.41 8.9E-06 48.7 7.9 92 185-301 133-235 (439)
479 TIGR02782 TrbB_P P-type conjug 92.9 0.33 7E-06 51.2 7.8 99 209-321 133-232 (299)
480 PF08477 Miro: Miro-like prote 92.9 0.085 1.8E-06 47.0 3.0 22 211-232 2-23 (119)
481 PRK10733 hflB ATP-dependent me 92.9 0.32 7E-06 57.1 8.6 46 185-230 152-207 (644)
482 TIGR01026 fliI_yscN ATPase Fli 92.9 0.28 6E-06 54.4 7.5 90 208-301 163-263 (440)
483 TIGR00382 clpX endopeptidase C 92.9 0.28 6E-06 53.8 7.4 46 185-230 77-138 (413)
484 TIGR03375 type_I_sec_LssB type 92.9 0.79 1.7E-05 54.8 12.1 23 208-230 491-513 (694)
485 cd01121 Sms Sms (bacterial rad 92.9 0.22 4.8E-06 54.1 6.7 87 207-301 81-168 (372)
486 PRK04182 cytidylate kinase; Pr 92.9 0.16 3.5E-06 49.1 5.2 22 210-231 2-23 (180)
487 PF06309 Torsin: Torsin; Inte 92.8 0.17 3.8E-06 45.1 4.7 47 185-231 25-76 (127)
488 PRK10820 DNA-binding transcrip 92.8 0.31 6.8E-06 55.8 8.2 47 184-230 203-249 (520)
489 PRK10078 ribose 1,5-bisphospho 92.8 0.086 1.9E-06 51.5 3.2 23 209-231 3-25 (186)
490 PF03308 ArgK: ArgK protein; 92.8 0.15 3.3E-06 51.3 4.9 38 193-230 14-51 (266)
491 PRK05986 cob(I)alamin adenolsy 92.8 0.39 8.5E-06 46.5 7.5 122 208-330 22-158 (191)
492 PRK13545 tagH teichoic acids e 92.8 1.1 2.4E-05 50.5 12.1 24 208-231 50-73 (549)
493 TIGR02902 spore_lonB ATP-depen 92.8 0.09 1.9E-06 60.2 3.7 48 181-230 61-108 (531)
494 TIGR03881 KaiC_arch_4 KaiC dom 92.8 0.83 1.8E-05 46.2 10.4 40 207-248 19-58 (229)
495 PRK14530 adenylate kinase; Pro 92.8 0.08 1.7E-06 53.1 2.9 21 210-230 5-25 (215)
496 TIGR00455 apsK adenylylsulfate 92.8 0.75 1.6E-05 44.7 9.7 24 207-230 17-40 (184)
497 cd00464 SK Shikimate kinase (S 92.8 0.08 1.7E-06 49.8 2.8 20 211-230 2-21 (154)
498 PRK07960 fliI flagellum-specif 92.7 0.29 6.3E-06 53.9 7.3 24 208-231 175-198 (455)
499 TIGR03878 thermo_KaiC_2 KaiC d 92.7 0.42 9.2E-06 49.3 8.3 40 207-248 35-74 (259)
500 PRK05057 aroK shikimate kinase 92.7 0.091 2E-06 50.6 3.1 24 208-231 4-27 (172)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=8.5e-78 Score=700.45 Aligned_cols=683 Identities=21% Similarity=0.283 Sum_probs=525.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHchhc-cCCcccccCChHHHHHHHHHHHHhHHHHHHHHHHhhhcccCCCccc----
Q 003890 58 VARLLFQLIRQKFDEFEVALPFLQLLDLE-ESDEDVKRGDILEILEDINHFVHESEEAIDAFFINIMQQQSRENES---- 132 (788)
Q Consensus 58 ~~~~~~~~~~~L~~~L~~i~~~l~~a~~~-~~~~~~~~~~~~~Wl~~l~~~~y~~ed~lD~~~~~~~~~~~~~~~~---- 132 (788)
...+.++.+..|++.|..++.++++|+++ .....++ .|.+.+++++|++||+++.|..+....+..+...
T Consensus 22 ~~~~~~~~i~~Lk~~L~~l~~~l~d~~a~~~~~~~~~-----~~~e~~~~~~~~~e~~~~~~~v~~~~~~~~~~l~~~~~ 96 (889)
T KOG4658|consen 22 CLDGKDNYILELKENLKALQSALEDLDAKRDDLERRV-----NWEEDVGDLVYLAEDIIWLFLVEEIERKANDLLSTRSV 96 (889)
T ss_pred HHhchHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhHH
Confidence 45666789999999999999999999999 8888899 9999999999999999999998887654333222
Q ss_pred --c-------cchhhhhHHHHHHHHHHHHHHHhccCCCCCCCCccCCCcccccccCCCCCC---CCcccchhcHHHHHHH
Q 003890 133 --E-------SSTKMALLVGLHSKIIDIRNRMQQLPPGDNGSDISEQGKKIIRLLSEGQPR---LDISEFERGREELFDL 200 (788)
Q Consensus 133 --~-------~~~~~~~~~~~~~~i~~l~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~vGr~~~~~~i~~~ 200 (788)
+ +-......+.+++++..+.+.++.+..+.. +..... ....+..+...|. .+ ||.+..++++.+.
T Consensus 97 ~~~~~c~~~~~~~~~~~~~~~~~rv~~~l~~ve~l~~~~~-~~~~~~-~~~~~~~~e~~~~~~~~~-VG~e~~~~kl~~~ 173 (889)
T KOG4658|consen 97 ERQRLCLCGFCSKNVSDSYKYGKRVSKVLREVESLGSKGV-FEVVGE-SLDPREKVETRPIQSESD-VGLETMLEKLWNR 173 (889)
T ss_pred HHHHHhhhhhHhHhhhhhHhHHHHHHHHHHHHHHhccccc-eecccc-cccchhhcccCCCCcccc-ccHHHHHHHHHHH
Confidence 1 111222334455555555555555543321 111110 0111222333333 33 9999999999999
Q ss_pred HhcCCCCcEEEEEEcCCCChHHHHHHHHHcccC-cccccceeEEEEeCCCCChHHHHHHHHHHcCCCCCCcccccCCHHH
Q 003890 201 LIEGPSGLSVVAILNGSGFDKTAFAADTYNNNH-IKFYFDCLAWVRVSIAYDSGKILDDIIKSVMPPSRVSVIIGEDYKL 279 (788)
Q Consensus 201 L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~-~~~~F~~~~wv~vs~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~ 279 (788)
|.+++ ..+++|+||||+||||||+.++|+.. ++.+|+.++||+||+.++...++++|+..++..... +.....++
T Consensus 174 L~~d~--~~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~VSk~f~~~~iq~~Il~~l~~~~~~--~~~~~~~~ 249 (889)
T KOG4658|consen 174 LMEDD--VGIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVVVSKEFTTRKIQQTILERLGLLDEE--WEDKEEDE 249 (889)
T ss_pred hccCC--CCEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEEEcccccHHhHHHHHHHHhccCCcc--cchhhHHH
Confidence 99887 49999999999999999999999987 999999999999999999999999999999875431 23334479
Q ss_pred HHHHHHHHhcCCcEEEEEeCCCCChhhHHHHhhhcCCCCCCcEEEEecCChHHHhh-ccccCCCccch------------
Q 003890 280 KKTILRDYLTNKKYFIVLDDVFNDSDIWDDLEQVLPDNQNGSRVLITVTDLDLLES-LEMENGEKIRP------------ 346 (788)
Q Consensus 280 ~~~~l~~~l~~kr~LlVLDdvw~~~~~~~~l~~~l~~~~~gskIivTTR~~~v~~~-~~~~~~~~~~~------------ 346 (788)
.+..|.+.|++||||||||||| +..+|+.++.++|....||||++|||++.||.. ++....+++++
T Consensus 250 ~~~~i~~~L~~krfllvLDDIW-~~~dw~~I~~~~p~~~~g~KvvlTTRs~~V~~~~m~~~~~~~v~~L~~~eaW~LF~~ 328 (889)
T KOG4658|consen 250 LASKLLNLLEGKRFLLVLDDIW-EEVDWDKIGVPFPSRENGSKVVLTTRSEEVCGRAMGVDYPIEVECLTPEEAWDLFQK 328 (889)
T ss_pred HHHHHHHHhccCceEEEEeccc-ccccHHhcCCCCCCccCCeEEEEEeccHhhhhccccCCccccccccCccccHHHHHH
Confidence 9999999999999999999999 999999999999999889999999999999998 77654444432
Q ss_pred -----------------------------HHHHHHHHhhccCch-hHHHHHHHcCCCCcc--CCccCCChHHHHHhhhcc
Q 003890 347 -----------------------------DSVLIGGQMIRLKHE-SWQFFILHYGSMPLE--NYVQGEAIPTIWRQIYAV 394 (788)
Q Consensus 347 -----------------------------ai~~ig~~L~~~~~~-~W~~~l~~~~~~~~~--~~~~~~~i~~~l~~~~sy 394 (788)
|++++|+.|+.++.. +|+++.+.+.+. +. .....+.|+++|+ +||
T Consensus 329 ~v~~~~~~~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~-~~~~~~~~~~~i~~iLk--lSy 405 (889)
T KOG4658|consen 329 KVGPNTLGSHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKSS-LAADFSGMEESILPILK--LSY 405 (889)
T ss_pred hhccccccccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHcccccc-ccCCCCchhhhhHHhhh--ccH
Confidence 999999999999998 999999998776 22 1234578999999 999
Q ss_pred CCCChhhHHHhhhhhccCCCceechhHHHHHHHHhCCCCC-----CHHHHHHHHHHHHHhCCcccceecCCCCceEEEEe
Q 003890 395 MELPFHLKVCCIYLCVFRPSIEISTRQLYQLWVAEGFIPY-----NSEETAEHYLKELIHRGFIQVSKRRAGGTIKACYV 469 (788)
Q Consensus 395 ~~L~~~lk~cfl~~~~Fp~~~~i~~~~Li~~W~a~g~i~~-----~~~~~~~~~~~~L~~~~ll~~~~~~~~~~~~~~~m 469 (788)
++||+++|.||+|||+|||||+|+++.|+.+|+||||+.+ ++++.|.+|+.+|++++|++..... ++..+|+|
T Consensus 406 d~L~~~lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~~~~~--~~~~~~km 483 (889)
T KOG4658|consen 406 DNLPEELKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLIEERDE--GRKETVKM 483 (889)
T ss_pred hhhhHHHHHHHHhhccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHHHHHHHhhcccc--cceeEEEe
Confidence 9999999999999999999999999999999999999977 7889999999999999999987643 66689999
Q ss_pred CHHHHHHHHHHhh-----hcCceeecCCC------CCCCCceeEEEeecCcccccc-ccccccccceEEecCCCCchhhh
Q 003890 470 PSFVYYSLLSVAV-----NTGLSWTLDVD------EEPPANVKWCYIMKDLIEFFS-LEHSDIYLQSFLNHSSESDHLAL 537 (788)
Q Consensus 470 Hdlv~d~a~~~~~-----~e~~~~~~~~~------~~~~~~~r~Ls~~~~~~~~~~-~~~~~~~Lr~L~l~~~~~~~~~~ 537 (788)
||+|||+|.++|+ +++.+...+.. ...+..+|++++.++.....+ ... +++|++|.+.++.. .+.
T Consensus 484 HDvvRe~al~ias~~~~~~e~~iv~~~~~~~~~~~~~~~~~~rr~s~~~~~~~~~~~~~~-~~~L~tLll~~n~~--~l~ 560 (889)
T KOG4658|consen 484 HDVVREMALWIASDFGKQEENQIVSDGVGLSEIPQVKSWNSVRRMSLMNNKIEHIAGSSE-NPKLRTLLLQRNSD--WLL 560 (889)
T ss_pred eHHHHHHHHHHhccccccccceEEECCcCccccccccchhheeEEEEeccchhhccCCCC-CCccceEEEeecch--hhh
Confidence 9999999999999 67654443211 114678999999988876665 666 88999999998863 223
Q ss_pred hhhhhhhcCCccccEEEecCCC-CCCCCccccCCCCccEEEecCCCCcccChhhcCCCCCcEEEccCC-CCcccchhhhc
Q 003890 538 IDCENFCEKFKHLRILNLGSAV-LVQFPPGLENLFHLKYLKLNIPSLKCLPSLLCTLLNLQTLEMPSS-YVDQSPEDIWM 615 (788)
Q Consensus 538 ~~~~~~~~~l~~L~~L~L~~~~-l~~lp~~i~~L~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~-~l~~lp~~l~~ 615 (788)
.+...+|..++.|++|||++|. +.++|.+|++|.|||||+++++.+..+|.++++|++|.+|++..+ .+..+|..+..
T Consensus 561 ~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~ 640 (889)
T KOG4658|consen 561 EISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLE 640 (889)
T ss_pred hcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhheeccccccccccccchhhh
Confidence 3445789999999999999886 789999999999999999999999999999999999999999998 56666666677
Q ss_pred ccccceeeccCccCCCCCcCCcCcccccccccccc---ccccCccccCCCCCCC----eEEEEccCCcChhcHHHhccCC
Q 003890 616 MQKLMHLNFGSITLPAPPKNYSSSLKNLIFISTLN---PSSCTPDILGRLPNVQ----TLRISGDLSCYHSGVSKSLCEL 688 (788)
Q Consensus 616 L~~L~~L~l~~~~~~~~i~~~~~~l~~L~~L~~~~---~~~~~~~~l~~L~~L~----~L~l~~~~~~~~~~~~~~l~~l 688 (788)
|.+|++|.+........- ..++.+.+|++|.... .+......+..++.|. .+.+.++ .....+.++..+
T Consensus 641 L~~Lr~L~l~~s~~~~~~-~~l~el~~Le~L~~ls~~~~s~~~~e~l~~~~~L~~~~~~l~~~~~---~~~~~~~~~~~l 716 (889)
T KOG4658|consen 641 LQSLRVLRLPRSALSNDK-LLLKELENLEHLENLSITISSVLLLEDLLGMTRLRSLLQSLSIEGC---SKRTLISSLGSL 716 (889)
T ss_pred cccccEEEeeccccccch-hhHHhhhcccchhhheeecchhHhHhhhhhhHHHHHHhHhhhhccc---ccceeecccccc
Confidence 999999998754322111 0114444555554443 2233335555555555 3333332 456677788899
Q ss_pred CCCCEEEeecCCCCCccc-ccccCC---Cccccccc-cccccccccCcccCCCCCcceEEEeccccccccccCCcccccc
Q 003890 689 HKLECLKLVNERKPSRMV-LYEYQF---PPTDMARI-LSQLIRQEFVESEMSLPLLQLLDLEESDEEDDERSDILEILQD 763 (788)
Q Consensus 689 ~~L~~L~L~~~~~~~~~~-~~~~l~---~~~~L~~L-~~~l~~~~lp~~l~~l~~L~~L~L~~~~l~~~~~~~~l~~l~~ 763 (788)
.+|+.|.+.++....... ..+... .+++|..+ ..+..+...+.|..-.++|+.|.+..|...++ ++|....
T Consensus 717 ~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~~~~f~~~L~~l~l~~~~~~e~----~i~~~k~ 792 (889)
T KOG4658|consen 717 GNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRDLTWLLFAPHLTSLSLVSCRLLED----IIPKLKA 792 (889)
T ss_pred cCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhccccccccchhhccCcccEEEEeccccccc----CCCHHHH
Confidence 999999999655431001 111111 13455555 22222356677776779999999999999887 7777766
Q ss_pred cccCCe
Q 003890 764 INDFVH 769 (788)
Q Consensus 764 L~~L~~ 769 (788)
+..++.
T Consensus 793 ~~~l~~ 798 (889)
T KOG4658|consen 793 LLELKE 798 (889)
T ss_pred hhhccc
Confidence 666664
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=1.4e-52 Score=515.84 Aligned_cols=545 Identities=16% Similarity=0.146 Sum_probs=340.0
Q ss_pred CCcccchhcHHHHHHHHhcCCCCcEEEEEEcCCCChHHHHHHHHHcccCcccccceeEEEEe---CCC-----------C
Q 003890 185 LDISEFERGREELFDLLIEGPSGLSVVAILNGSGFDKTAFAADTYNNNHIKFYFDCLAWVRV---SIA-----------Y 250 (788)
Q Consensus 185 ~~~vGr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v---s~~-----------~ 250 (788)
.++|||+..++++..+|..+.+.+++|+|+||||+||||||+++|+ ++..+|+..+|+.. +.. +
T Consensus 184 ~~~vG~~~~l~~l~~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~--~l~~~F~g~vfv~~~~v~~~~~~~~~~~~~~~ 261 (1153)
T PLN03210 184 EDFVGIEDHIAKMSSLLHLESEEVRMVGIWGSSGIGKTTIARALFS--RLSRQFQSSVFIDRAFISKSMEIYSSANPDDY 261 (1153)
T ss_pred ccccchHHHHHHHHHHHccccCceEEEEEEcCCCCchHHHHHHHHH--HHhhcCCeEEEeeccccccchhhccccccccc
Confidence 6799999999999999876666799999999999999999999999 78889998887742 111 1
Q ss_pred C-hHHHHHHHHHHcCCCCCCcccccCCHHHHHHHHHHHhcCCcEEEEEeCCCCChhhHHHHhhhcCCCCCCcEEEEecCC
Q 003890 251 D-SGKILDDIIKSVMPPSRVSVIIGEDYKLKKTILRDYLTNKKYFIVLDDVFNDSDIWDDLEQVLPDNQNGSRVLITVTD 329 (788)
Q Consensus 251 ~-~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVLDdvw~~~~~~~~l~~~l~~~~~gskIivTTR~ 329 (788)
+ ...++++++.++...... .... ...+++.+++||+|||||||| +..+|+.+.....+.++||+||||||+
T Consensus 262 ~~~~~l~~~~l~~il~~~~~---~~~~----~~~~~~~L~~krvLLVLDdv~-~~~~l~~L~~~~~~~~~GsrIIiTTrd 333 (1153)
T PLN03210 262 NMKLHLQRAFLSEILDKKDI---KIYH----LGAMEERLKHRKVLIFIDDLD-DQDVLDALAGQTQWFGSGSRIIVITKD 333 (1153)
T ss_pred chhHHHHHHHHHHHhCCCCc---ccCC----HHHHHHHHhCCeEEEEEeCCC-CHHHHHHHHhhCccCCCCcEEEEEeCc
Confidence 1 124556666665443221 1111 245788899999999999999 999999999887788899999999999
Q ss_pred hHHHhhccccCCCccch----------------------------------------HHHHHHHHhhccCchhHHHHHHH
Q 003890 330 LDLLESLEMENGEKIRP----------------------------------------DSVLIGGQMIRLKHESWQFFILH 369 (788)
Q Consensus 330 ~~v~~~~~~~~~~~~~~----------------------------------------ai~~ig~~L~~~~~~~W~~~l~~ 369 (788)
++++..++....+.+++ |++++|+.|++++..+|+.++++
T Consensus 334 ~~vl~~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~~~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~k~~~~W~~~l~~ 413 (1153)
T PLN03210 334 KHFLRAHGIDHIYEVCLPSNELALEMFCRSAFKKNSPPDGFMELASEVALRAGNLPLGLNVLGSYLRGRDKEDWMDMLPR 413 (1153)
T ss_pred HHHHHhcCCCeEEEecCCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhCCCcHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 99998765433222211 99999999999866699999999
Q ss_pred cCCCCccCCccCCChHHHHHhhhccCCCCh-hhHHHhhhhhccCCCceechhHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 003890 370 YGSMPLENYVQGEAIPTIWRQIYAVMELPF-HLKVCCIYLCVFRPSIEISTRQLYQLWVAEGFIPYNSEETAEHYLKELI 448 (788)
Q Consensus 370 ~~~~~~~~~~~~~~i~~~l~~~~sy~~L~~-~lk~cfl~~~~Fp~~~~i~~~~Li~~W~a~g~i~~~~~~~~~~~~~~L~ 448 (788)
+... . ..+|.++|+ +||++|++ ..|.||++||+||.+..++ .+..|.+.+... ++..++.|+
T Consensus 414 L~~~-~-----~~~I~~~L~--~SYd~L~~~~~k~~Fl~ia~ff~~~~~~---~v~~~l~~~~~~------~~~~l~~L~ 476 (1153)
T PLN03210 414 LRNG-L-----DGKIEKTLR--VSYDGLNNKKDKAIFRHIACLFNGEKVN---DIKLLLANSDLD------VNIGLKNLV 476 (1153)
T ss_pred HHhC-c-----cHHHHHHHH--HhhhccCccchhhhhheehhhcCCCCHH---HHHHHHHhcCCC------chhChHHHH
Confidence 8765 2 257999999 99999987 5999999999999987553 477788876653 234589999
Q ss_pred hCCcccceecCCCCceEEEEeCHHHHHHHHHHhhhcC-------ceeecCC------CCCC-------------------
Q 003890 449 HRGFIQVSKRRAGGTIKACYVPSFVYYSLLSVAVNTG-------LSWTLDV------DEEP------------------- 496 (788)
Q Consensus 449 ~~~ll~~~~~~~~~~~~~~~mHdlv~d~a~~~~~~e~-------~~~~~~~------~~~~------------------- 496 (788)
++||++... ..+.|||++|++|+.++.++. +.....+ ....
T Consensus 477 ~ksLi~~~~-------~~~~MHdLl~~~~r~i~~~~~~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~~~~i 549 (1153)
T PLN03210 477 DKSLIHVRE-------DIVEMHSLLQEMGKEIVRAQSNEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEIDELHI 549 (1153)
T ss_pred hcCCEEEcC-------CeEEhhhHHHHHHHHHHHhhcCCCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCccceeee
Confidence 999998643 348999999999999987652 1100000 0000
Q ss_pred -------CCceeEEEeecCcc--------cccc-ccccccccceEEecCCCCchhhhhhhhhhhcCCccccEEEecCCCC
Q 003890 497 -------PANVKWCYIMKDLI--------EFFS-LEHSDIYLQSFLNHSSESDHLALIDCENFCEKFKHLRILNLGSAVL 560 (788)
Q Consensus 497 -------~~~~r~Ls~~~~~~--------~~~~-~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l 560 (788)
..+++.|.+..+.. ..+. .....++||.|.+.++.. .. +|..| .+.+|+.|++.+|.+
T Consensus 550 ~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l-~~----lP~~f-~~~~L~~L~L~~s~l 623 (1153)
T PLN03210 550 HENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPL-RC----MPSNF-RPENLVKLQMQGSKL 623 (1153)
T ss_pred cHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCC-CC----CCCcC-CccCCcEEECcCccc
Confidence 11222222221100 0000 111012456665555432 11 11222 234555555555555
Q ss_pred CCCCccccCCCCccEEEecCCC-CcccChhhcCCCCCcEEEccCC-CCcccchhhhcccccceeeccCccCCCCCcCCcC
Q 003890 561 VQFPPGLENLFHLKYLKLNIPS-LKCLPSLLCTLLNLQTLEMPSS-YVDQSPEDIWMMQKLMHLNFGSITLPAPPKNYSS 638 (788)
Q Consensus 561 ~~lp~~i~~L~~L~~L~L~~~~-i~~lp~~i~~L~~L~~L~L~~~-~l~~lp~~l~~L~~L~~L~l~~~~~~~~i~~~~~ 638 (788)
..+|..+..+.+|++|+|+++. +..+| .++.+++|++|+|++| .+..+|..++++++|+.|++++|.....+|..+
T Consensus 624 ~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i- 701 (1153)
T PLN03210 624 EKLWDGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI- 701 (1153)
T ss_pred cccccccccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-
Confidence 5555555555555555555432 34444 2444555555555554 444455555555555555554442222222111
Q ss_pred cccccccccccc---------------------ccccCcccc-------------------------------CCCCCCC
Q 003890 639 SLKNLIFISTLN---------------------PSSCTPDIL-------------------------------GRLPNVQ 666 (788)
Q Consensus 639 ~l~~L~~L~~~~---------------------~~~~~~~~l-------------------------------~~L~~L~ 666 (788)
++++|+.|++.+ +....++.. ...++|+
T Consensus 702 ~l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~ 781 (1153)
T PLN03210 702 NLKSLYRLNLSGCSRLKSFPDISTNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLT 781 (1153)
T ss_pred CCCCCCEEeCCCCCCccccccccCCcCeeecCCCccccccccccccccccccccccchhhccccccccchhhhhccccch
Confidence 233333333221 111100000 0113455
Q ss_pred eEEEEccCCcChhcHHHhccCCCCCCEEEeecCCCCCccc-----------------ccccCC-Cccccccc---ccccc
Q 003890 667 TLRISGDLSCYHSGVSKSLCELHKLECLKLVNERKPSRMV-----------------LYEYQF-PPTDMARI---LSQLI 725 (788)
Q Consensus 667 ~L~l~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~-----------------~~~~l~-~~~~L~~L---~~~l~ 725 (788)
.|++++|. ....+|.+++++++|+.|+|++|....... .+..+. .+++|+.| .+.+
T Consensus 782 ~L~Ls~n~--~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n~i- 858 (1153)
T PLN03210 782 RLFLSDIP--SLVELPSSIQNLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRLRTFPDISTNISDLNLSRTGI- 858 (1153)
T ss_pred heeCCCCC--CccccChhhhCCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCCCccccccccccccCEeECCCCCC-
Confidence 55555554 344566667777777777777543221000 000111 12456666 4556
Q ss_pred ccccCcccCCCCCcceEEEeccccccccccCCcccccccccCCeeEecccCchh
Q 003890 726 RQEFVESEMSLPLLQLLDLEESDEEDDERSDILEILQDINDFVHESEEAIDTFF 779 (788)
Q Consensus 726 ~~~lp~~l~~l~~L~~L~L~~~~l~~~~~~~~l~~l~~L~~L~~L~L~~~~~l~ 779 (788)
..+|.++..+++|+.|+|++|+.... ..+.+..+++|+.|++++|..+.
T Consensus 859 -~~iP~si~~l~~L~~L~L~~C~~L~~----l~~~~~~L~~L~~L~l~~C~~L~ 907 (1153)
T PLN03210 859 -EEVPWWIEKFSNLSFLDMNGCNNLQR----VSLNISKLKHLETVDFSDCGALT 907 (1153)
T ss_pred -ccChHHHhcCCCCCEEECCCCCCcCc----cCcccccccCCCeeecCCCcccc
Confidence 67888899999999999999876654 34457789999999999998775
No 3
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=100.00 E-value=5.7e-37 Score=324.36 Aligned_cols=241 Identities=27% Similarity=0.433 Sum_probs=194.6
Q ss_pred chhcHHHHHHHHhcCCCCcEEEEEEcCCCChHHHHHHHHHcccCcccccceeEEEEeCCCCChHHHHHHHHHHcCCCCCC
Q 003890 190 FERGREELFDLLIEGPSGLSVVAILNGSGFDKTAFAADTYNNNHIKFYFDCLAWVRVSIAYDSGKILDDIIKSVMPPSRV 269 (788)
Q Consensus 190 r~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~~l~~~~~~ 269 (788)
||.++++|.+.|.....+.++|+|+||||+||||||+.++++.+++.+|+.++|+.++...+...++++|+.+++.....
T Consensus 1 re~~~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~~ 80 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPDSS 80 (287)
T ss_dssp -HHHHHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-ST
T ss_pred CHHHHHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccccccccccccc
Confidence 78999999999998666799999999999999999999999777999999999999999999999999999999887431
Q ss_pred cccccCCHHHHHHHHHHHhcCCcEEEEEeCCCCChhhHHHHhhhcCCCCCCcEEEEecCChHHHhhccc-cCCCccch--
Q 003890 270 SVIIGEDYKLKKTILRDYLTNKKYFIVLDDVFNDSDIWDDLEQVLPDNQNGSRVLITVTDLDLLESLEM-ENGEKIRP-- 346 (788)
Q Consensus 270 ~~~~~~~~~~~~~~l~~~l~~kr~LlVLDdvw~~~~~~~~l~~~l~~~~~gskIivTTR~~~v~~~~~~-~~~~~~~~-- 346 (788)
. ....+.++....+++.|+++++|||||||| +...|+.+...++....||+||||||+..++..++. ...+.+++
T Consensus 81 ~-~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~-~~~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~~~~~~l~~L~ 158 (287)
T PF00931_consen 81 I-SDPKDIEELQDQLRELLKDKRCLLVLDDVW-DEEDLEELREPLPSFSSGSKILVTTRDRSVAGSLGGTDKVIELEPLS 158 (287)
T ss_dssp S-SCCSSHHHHHHHHHHHHCCTSEEEEEEEE--SHHHH-------HCHHSS-EEEEEESCGGGGTTHHSCEEEEECSS--
T ss_pred c-ccccccccccccchhhhccccceeeeeeec-ccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 1 145677889999999999999999999999 988999999888887789999999999998876653 11222211
Q ss_pred ---------------------------------------HHHHHHHHhhccCch-hHHHHHHHcCCCCccCCccCCChHH
Q 003890 347 ---------------------------------------DSVLIGGQMIRLKHE-SWQFFILHYGSMPLENYVQGEAIPT 386 (788)
Q Consensus 347 ---------------------------------------ai~~ig~~L~~~~~~-~W~~~l~~~~~~~~~~~~~~~~i~~ 386 (788)
|++++|++|+.+... +|+.+++++.............+..
T Consensus 159 ~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~ 238 (287)
T PF00931_consen 159 EEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRESRDYDRSVFS 238 (287)
T ss_dssp HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCSSGSCHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 999999999776654 9999998876661122224567999
Q ss_pred HHHhhhccCCCChhhHHHhhhhhccCCCceechhHHHHHHHHhCCCCC
Q 003890 387 IWRQIYAVMELPFHLKVCCIYLCVFRPSIEISTRQLYQLWVAEGFIPY 434 (788)
Q Consensus 387 ~l~~~~sy~~L~~~lk~cfl~~~~Fp~~~~i~~~~Li~~W~a~g~i~~ 434 (788)
++. +||+.||+++|.||+|||+||+++.|+++.|+++|+++|||++
T Consensus 239 ~l~--~s~~~L~~~~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~~ 284 (287)
T PF00931_consen 239 ALE--LSYDSLPDELRRCFLYLSIFPEGVPIPRERLIRLWVAEGFISS 284 (287)
T ss_dssp HHH--HHHHSSHTCCHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC-
T ss_pred cce--echhcCCccHHHHHhhCcCCCCCceECHHHHHHHHHHCCCCcc
Confidence 999 9999999999999999999999999999999999999999964
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.81 E-value=1.6e-19 Score=223.19 Aligned_cols=243 Identities=20% Similarity=0.224 Sum_probs=158.2
Q ss_pred ccccceEEecCCCCchhhhhhhhhhhcCCccccEEEecCCCCC-CCCccccCCCCccEEEecCCCCc-ccChhhcCCCCC
Q 003890 519 DIYLQSFLNHSSESDHLALIDCENFCEKFKHLRILNLGSAVLV-QFPPGLENLFHLKYLKLNIPSLK-CLPSLLCTLLNL 596 (788)
Q Consensus 519 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~-~lp~~i~~L~~L~~L~L~~~~i~-~lp~~i~~L~~L 596 (788)
+++|+.|.+.++.....+ | ...+++|++|+|++|.+. .+|..++++.+|++|++++|.+. .+|..++++++|
T Consensus 117 l~~L~~L~Ls~n~l~~~~----p--~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L 190 (968)
T PLN00113 117 SSSLRYLNLSNNNFTGSI----P--RGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSL 190 (968)
T ss_pred CCCCCEEECcCCcccccc----C--ccccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCC
Confidence 555666665555432111 1 134566666666666665 56666777777777777777654 566677777777
Q ss_pred cEEEccCCCCc-ccchhhhcccccceeeccCccCCCCCcCCcCcccccccccccccc--ccCccccCCCCCCCeEEEEcc
Q 003890 597 QTLEMPSSYVD-QSPEDIWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFISTLNPS--SCTPDILGRLPNVQTLRISGD 673 (788)
Q Consensus 597 ~~L~L~~~~l~-~lp~~l~~L~~L~~L~l~~~~~~~~i~~~~~~l~~L~~L~~~~~~--~~~~~~l~~L~~L~~L~l~~~ 673 (788)
++|++++|.+. .+|..++++++|++|++++|.+...+|..++++++|++|++.++. +..+..++++++|+.|++++|
T Consensus 191 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n 270 (968)
T PLN00113 191 EFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQN 270 (968)
T ss_pred CeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCC
Confidence 77777777443 456667777777777777766555555555777777777776543 334556777777777777776
Q ss_pred CCcChhcHHHhccCCCCCCEEEeecCCCCCcccccccCCCccccccc---cccccccccCcccCCCCCcceEEEeccccc
Q 003890 674 LSCYHSGVSKSLCELHKLECLKLVNERKPSRMVLYEYQFPPTDMARI---LSQLIRQEFVESEMSLPLLQLLDLEESDEE 750 (788)
Q Consensus 674 ~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~l~~~~~L~~L---~~~l~~~~lp~~l~~l~~L~~L~L~~~~l~ 750 (788)
. .....+..+.++++|+.|+|+++.... ..+..+..+++|+.| .+.+ ...+|.++..+++|+.|+|++|.+.
T Consensus 271 ~--l~~~~p~~l~~l~~L~~L~Ls~n~l~~--~~p~~~~~l~~L~~L~l~~n~~-~~~~~~~~~~l~~L~~L~L~~n~l~ 345 (968)
T PLN00113 271 K--LSGPIPPSIFSLQKLISLDLSDNSLSG--EIPELVIQLQNLEILHLFSNNF-TGKIPVALTSLPRLQVLQLWSNKFS 345 (968)
T ss_pred e--eeccCchhHhhccCcCEEECcCCeecc--CCChhHcCCCCCcEEECCCCcc-CCcCChhHhcCCCCCEEECcCCCCc
Confidence 5 444556667777777777777543321 234455667777777 4444 3456777778888888888888877
Q ss_pred cccccCCcccccccccCCeeEecccC
Q 003890 751 DDERSDILEILQDINDFVHESEEAID 776 (788)
Q Consensus 751 ~~~~~~~l~~l~~L~~L~~L~L~~~~ 776 (788)
.. ....++.+++|+.|++++|.
T Consensus 346 ~~----~p~~l~~~~~L~~L~Ls~n~ 367 (968)
T PLN00113 346 GE----IPKNLGKHNNLTVLDLSTNN 367 (968)
T ss_pred Cc----CChHHhCCCCCcEEECCCCe
Confidence 64 44567788888888888764
No 5
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.80 E-value=1.3e-19 Score=223.75 Aligned_cols=265 Identities=19% Similarity=0.210 Sum_probs=148.5
Q ss_pred CceeEEEeecCccc-cccccccccccceEEecCCCCchhhhhhhhhhhcCCccccEEEecCCCCC-CCCccccCCCCccE
Q 003890 498 ANVKWCYIMKDLIE-FFSLEHSDIYLQSFLNHSSESDHLALIDCENFCEKFKHLRILNLGSAVLV-QFPPGLENLFHLKY 575 (788)
Q Consensus 498 ~~~r~Ls~~~~~~~-~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~-~lp~~i~~L~~L~~ 575 (788)
.++|+|.+.++... ..+... +++|++|.+.++.... .+|..+..+++|++|+|++|.+. .+|..++++.+|++
T Consensus 118 ~~L~~L~Ls~n~l~~~~p~~~-l~~L~~L~Ls~n~~~~----~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~ 192 (968)
T PLN00113 118 SSLRYLNLSNNNFTGSIPRGS-IPNLETLDLSNNMLSG----EIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEF 192 (968)
T ss_pred CCCCEEECcCCccccccCccc-cCCCCEEECcCCcccc----cCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCe
Confidence 45666666655432 222333 6677777776665422 22355666777777777777654 56666667777777
Q ss_pred EEecCCCCc-ccChhhcCCCCCcEEEccCCCCc-ccchhhhcccccceeeccCccCCCCCcCCcCcccccccccccccc-
Q 003890 576 LKLNIPSLK-CLPSLLCTLLNLQTLEMPSSYVD-QSPEDIWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFISTLNPS- 652 (788)
Q Consensus 576 L~L~~~~i~-~lp~~i~~L~~L~~L~L~~~~l~-~lp~~l~~L~~L~~L~l~~~~~~~~i~~~~~~l~~L~~L~~~~~~- 652 (788)
|++++|.+. .+|..++++++|++|++++|.+. .+|..++++++|++|++++|.+...+|..|+++++|++|++.++.
T Consensus 193 L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l 272 (968)
T PLN00113 193 LTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKL 272 (968)
T ss_pred eeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCee
Confidence 777666655 45666666777777777666443 456666666777777766665544444445666666666665432
Q ss_pred -ccCccccCCCCCCCeEEEEccCCcChhcHHHhccCCCCCCEEEeecCCCCCcccccccCCCcc----------------
Q 003890 653 -SCTPDILGRLPNVQTLRISGDLSCYHSGVSKSLCELHKLECLKLVNERKPSRMVLYEYQFPPT---------------- 715 (788)
Q Consensus 653 -~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~l~~~~---------------- 715 (788)
+..+..+..+++|+.|++++|. .....+..+.++++|+.|+++++.... ..+..+..++
T Consensus 273 ~~~~p~~l~~l~~L~~L~Ls~n~--l~~~~p~~~~~l~~L~~L~l~~n~~~~--~~~~~~~~l~~L~~L~L~~n~l~~~~ 348 (968)
T PLN00113 273 SGPIPPSIFSLQKLISLDLSDNS--LSGEIPELVIQLQNLEILHLFSNNFTG--KIPVALTSLPRLQVLQLWSNKFSGEI 348 (968)
T ss_pred eccCchhHhhccCcCEEECcCCe--eccCCChhHcCCCCCcEEECCCCccCC--cCChhHhcCCCCCEEECcCCCCcCcC
Confidence 2334445556666666666554 333444455555555555555332210 1222333344
Q ss_pred --------ccccc---cccccccccCcccCCCCCcceEEEeccccccccccCCcccccccccCCeeEecccC
Q 003890 716 --------DMARI---LSQLIRQEFVESEMSLPLLQLLDLEESDEEDDERSDILEILQDINDFVHESEEAID 776 (788)
Q Consensus 716 --------~L~~L---~~~l~~~~lp~~l~~l~~L~~L~L~~~~l~~~~~~~~l~~l~~L~~L~~L~L~~~~ 776 (788)
+|+.| .+.+ ...+|.++..+++|+.|++++|.+... ..+.++.+++|+.|++++|.
T Consensus 349 p~~l~~~~~L~~L~Ls~n~l-~~~~p~~~~~~~~L~~L~l~~n~l~~~----~p~~~~~~~~L~~L~L~~n~ 415 (968)
T PLN00113 349 PKNLGKHNNLTVLDLSTNNL-TGEIPEGLCSSGNLFKLILFSNSLEGE----IPKSLGACRSLRRVRLQDNS 415 (968)
T ss_pred ChHHhCCCCCcEEECCCCee-EeeCChhHhCcCCCCEEECcCCEeccc----CCHHHhCCCCCCEEECcCCE
Confidence 44444 2233 123444444555555555555555443 33446677778888777764
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.79 E-value=3.9e-21 Score=203.83 Aligned_cols=268 Identities=17% Similarity=0.161 Sum_probs=169.8
Q ss_pred CCceeEEEeecCccc-ccc-ccccccccceEEecCCCCchhhhhhhhhhhcCCccccEEEecCCCCCCCCccccCCCCcc
Q 003890 497 PANVKWCYIMKDLIE-FFS-LEHSDIYLQSFLNHSSESDHLALIDCENFCEKFKHLRILNLGSAVLVQFPPGLENLFHLK 574 (788)
Q Consensus 497 ~~~~r~Ls~~~~~~~-~~~-~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~i~~L~~L~ 574 (788)
..++.||++..|... +.. ..+ +|.||++++..+...++ -+|.-+..+..|.+|||++|++.+.|..+..-+++-
T Consensus 54 lqkLEHLs~~HN~L~~vhGELs~-Lp~LRsv~~R~N~LKns---GiP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~i 129 (1255)
T KOG0444|consen 54 LQKLEHLSMAHNQLISVHGELSD-LPRLRSVIVRDNNLKNS---GIPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSI 129 (1255)
T ss_pred HhhhhhhhhhhhhhHhhhhhhcc-chhhHHHhhhccccccC---CCCchhcccccceeeecchhhhhhcchhhhhhcCcE
Confidence 346778888766543 222 556 89999999988776322 234566688999999999999999999999999999
Q ss_pred EEEecCCCCcccChhh-cCCCCCcEEEccCCCCcccchhhhcccccceeeccCccCCCCCcCCcCccccccccccccc--
Q 003890 575 YLKLNIPSLKCLPSLL-CTLLNLQTLEMPSSYVDQSPEDIWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFISTLNP-- 651 (788)
Q Consensus 575 ~L~L~~~~i~~lp~~i-~~L~~L~~L~L~~~~l~~lp~~l~~L~~L~~L~l~~~~~~~~i~~~~~~l~~L~~L~~~~~-- 651 (788)
.|+|++|+|..+|.++ -+|..|-+|||++|.+..+|+.+..|.+|+.|.+++|.+..--...+..+++|++|.+++.
T Consensus 130 VLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqR 209 (1255)
T KOG0444|consen 130 VLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQR 209 (1255)
T ss_pred EEEcccCccccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccc
Confidence 9999999999999875 6899999999999999999998999999999999876332100000134445555544431
Q ss_pred -cccCccccCCCCCCCeEEEEccCCcChhcHHHhccCCCCCCEEEeec--------------------------------
Q 003890 652 -SSCTPDILGRLPNVQTLRISGDLSCYHSGVSKSLCELHKLECLKLVN-------------------------------- 698 (788)
Q Consensus 652 -~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~L~~-------------------------------- 698 (788)
....+.++..|.||+.++++.+. ...+|..+.++++|+.|+|++
T Consensus 210 Tl~N~Ptsld~l~NL~dvDlS~N~---Lp~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQLt~LP~a 286 (1255)
T KOG0444|consen 210 TLDNIPTSLDDLHNLRDVDLSENN---LPIVPECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQLTVLPDA 286 (1255)
T ss_pred hhhcCCCchhhhhhhhhccccccC---CCcchHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccchhccchHH
Confidence 12344444555555555555443 444444444444454444443
Q ss_pred --------------CCCCCcccccccCCCccccccc---cccccccccCcccCCCCCcceEEEeccccccccccCCcccc
Q 003890 699 --------------ERKPSRMVLYEYQFPPTDMARI---LSQLIRQEFVESEMSLPLLQLLDLEESDEEDDERSDILEIL 761 (788)
Q Consensus 699 --------------~~~~~~~~~~~~l~~~~~L~~L---~~~l~~~~lp~~l~~l~~L~~L~L~~~~l~~~~~~~~l~~l 761 (788)
+....+ ..+.++..+.+|+.+ +|.+ ..+|..+..+..|+.|.|+.|.+.. .+..+
T Consensus 287 vcKL~kL~kLy~n~NkL~Fe-GiPSGIGKL~~Levf~aanN~L--ElVPEglcRC~kL~kL~L~~NrLiT-----LPeaI 358 (1255)
T KOG0444|consen 287 VCKLTKLTKLYANNNKLTFE-GIPSGIGKLIQLEVFHAANNKL--ELVPEGLCRCVKLQKLKLDHNRLIT-----LPEAI 358 (1255)
T ss_pred HhhhHHHHHHHhccCccccc-CCccchhhhhhhHHHHhhcccc--ccCchhhhhhHHHHHhcccccceee-----chhhh
Confidence 211100 123333334444444 3334 4445555555666666666666653 23345
Q ss_pred cccccCCeeEecccCchh
Q 003890 762 QDINDFVHESEEAIDTFF 779 (788)
Q Consensus 762 ~~L~~L~~L~L~~~~~l~ 779 (788)
.-||.|+.|++..++.|+
T Consensus 359 HlL~~l~vLDlreNpnLV 376 (1255)
T KOG0444|consen 359 HLLPDLKVLDLRENPNLV 376 (1255)
T ss_pred hhcCCcceeeccCCcCcc
Confidence 667788888888877665
No 7
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.72 E-value=1.4e-18 Score=183.84 Aligned_cols=268 Identities=15% Similarity=0.132 Sum_probs=164.8
Q ss_pred CceeEEEeecCcccccc-ccccccccceEEecCCCCchhhhhhhhhhhcCCccccEEEecCCCCCCCC-ccccCCCCccE
Q 003890 498 ANVKWCYIMKDLIEFFS-LEHSDIYLQSFLNHSSESDHLALIDCENFCEKFKHLRILNLGSAVLVQFP-PGLENLFHLKY 575 (788)
Q Consensus 498 ~~~r~Ls~~~~~~~~~~-~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp-~~i~~L~~L~~ 575 (788)
.+++-+++..|....+| +..-..+|..|.+.++.+. .+....++.++.||+|||+.|.|+++| .++..-.++++
T Consensus 102 ~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~----sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~ 177 (873)
T KOG4194|consen 102 PNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLIS----SVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKK 177 (873)
T ss_pred CcceeeeeccchhhhcccccccccceeEEeeeccccc----cccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceE
Confidence 34555666666555555 2221445777777776652 223367777888888888888888777 34666678888
Q ss_pred EEecCCCCcccC-hhhcCCCCCcEEEccCCCCcccch-hhhcccccceeeccCccCCCCCcCCcCccccccccccccccc
Q 003890 576 LKLNIPSLKCLP-SLLCTLLNLQTLEMPSSYVDQSPE-DIWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFISTLNPSS 653 (788)
Q Consensus 576 L~L~~~~i~~lp-~~i~~L~~L~~L~L~~~~l~~lp~-~l~~L~~L~~L~l~~~~~~~~i~~~~~~l~~L~~L~~~~~~~ 653 (788)
|+|++|.|+.+- ..|.+|.+|.+|.|+.|.++.+|. .|.+|++|+.|+|..|.+...---.|..|.+|+.|.+-.+..
T Consensus 178 L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I 257 (873)
T KOG4194|consen 178 LNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDI 257 (873)
T ss_pred EeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCc
Confidence 888888888773 457788888888888888888886 577788888888887755421011247777888777765444
Q ss_pred cCccc--cCCCCCCCeEEEEccCCcChhcHHHhccCCCCCCEEEeecCCCCCcccccccCCCccccccc---cccccccc
Q 003890 654 CTPDI--LGRLPNVQTLRISGDLSCYHSGVSKSLCELHKLECLKLVNERKPSRMVLYEYQFPPTDMARI---LSQLIRQE 728 (788)
Q Consensus 654 ~~~~~--l~~L~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~l~~~~~L~~L---~~~l~~~~ 728 (788)
..+.+ |-.|.++++|++..+. .......++.+++.|+.|+|+.+.... ..++++..+++|+.| .|.+ .+
T Consensus 258 ~kL~DG~Fy~l~kme~l~L~~N~--l~~vn~g~lfgLt~L~~L~lS~NaI~r--ih~d~WsftqkL~~LdLs~N~i--~~ 331 (873)
T KOG4194|consen 258 SKLDDGAFYGLEKMEHLNLETNR--LQAVNEGWLFGLTSLEQLDLSYNAIQR--IHIDSWSFTQKLKELDLSSNRI--TR 331 (873)
T ss_pred ccccCcceeeecccceeecccch--hhhhhcccccccchhhhhccchhhhhe--eecchhhhcccceeEecccccc--cc
Confidence 43332 5556666666666665 333334456666666666666432211 345555555555555 4444 34
Q ss_pred cCc-c------------------------cCCCCCcceEEEeccccccccccCCcccccccccCCeeEecccC
Q 003890 729 FVE-S------------------------EMSLPLLQLLDLEESDEEDDERSDILEILQDINDFVHESEEAID 776 (788)
Q Consensus 729 lp~-~------------------------l~~l~~L~~L~L~~~~l~~~~~~~~l~~l~~L~~L~~L~L~~~~ 776 (788)
+|+ . |..+++|++|+|++|.+..... |.-..+.+||.|+.|+|.|+.
T Consensus 332 l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IE-Daa~~f~gl~~LrkL~l~gNq 403 (873)
T KOG4194|consen 332 LDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIE-DAAVAFNGLPSLRKLRLTGNQ 403 (873)
T ss_pred CChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEe-cchhhhccchhhhheeecCce
Confidence 432 2 2235666666666666543100 022335567777777777764
No 8
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.70 E-value=3.2e-19 Score=189.44 Aligned_cols=260 Identities=16% Similarity=0.182 Sum_probs=195.5
Q ss_pred CCceeEEEeecCcccccc--ccccccccceEEecCCCCchhhhhhhhhhhcCCccccEEEecCCCCC--CCCccccCCCC
Q 003890 497 PANVKWCYIMKDLIEFFS--LEHSDIYLQSFLNHSSESDHLALIDCENFCEKFKHLRILNLGSAVLV--QFPPGLENLFH 572 (788)
Q Consensus 497 ~~~~r~Ls~~~~~~~~~~--~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~--~lp~~i~~L~~ 572 (788)
...+++|.+........| ... +.+|..|.+.++... . +...++.++.||.+++..|++. .+|..|.+|..
T Consensus 31 Mt~~~WLkLnrt~L~~vPeEL~~-lqkLEHLs~~HN~L~-~----vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~d 104 (1255)
T KOG0444|consen 31 MTQMTWLKLNRTKLEQVPEELSR-LQKLEHLSMAHNQLI-S----VHGELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKD 104 (1255)
T ss_pred hhheeEEEechhhhhhChHHHHH-HhhhhhhhhhhhhhH-h----hhhhhccchhhHHHhhhccccccCCCCchhccccc
Confidence 456788888877666555 455 888888888877652 1 2267889999999999999987 79999999999
Q ss_pred ccEEEecCCCCcccChhhcCCCCCcEEEccCCCCcccchh-hhcccccceeeccCccCCCCCcCCcCccccccccccccc
Q 003890 573 LKYLKLNIPSLKCLPSLLCTLLNLQTLEMPSSYVDQSPED-IWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFISTLNP 651 (788)
Q Consensus 573 L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~lp~~-l~~L~~L~~L~l~~~~~~~~i~~~~~~l~~L~~L~~~~~ 651 (788)
|..|+|+.|++.+.|..+.+-+++-+|+|++|++..+|.. +.+|+.|-+|++++|++. .+|+.+..|..|++|.++++
T Consensus 105 Lt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~N 183 (1255)
T KOG0444|consen 105 LTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLE-MLPPQIRRLSMLQTLKLSNN 183 (1255)
T ss_pred ceeeecchhhhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhh-hcCHHHHHHhhhhhhhcCCC
Confidence 9999999999999999999999999999999999999975 789999999999998643 22333399999999999976
Q ss_pred ccc--CccccCCCCCCCeEEEEccCCcChhcHHHhccCCCCCCEEEeecCCCCCcccccccCCCccccccc---cccccc
Q 003890 652 SSC--TPDILGRLPNVQTLRISGDLSCYHSGVSKSLCELHKLECLKLVNERKPSRMVLYEYQFPPTDMARI---LSQLIR 726 (788)
Q Consensus 652 ~~~--~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~l~~~~~L~~L---~~~l~~ 726 (788)
... .+..+..+++|+.|++++.. .....+|.++..+.+|..++++.++.. ..++.+..+++|+.| .|.+
T Consensus 184 PL~hfQLrQLPsmtsL~vLhms~Tq-RTl~N~Ptsld~l~NL~dvDlS~N~Lp---~vPecly~l~~LrrLNLS~N~i-- 257 (1255)
T KOG0444|consen 184 PLNHFQLRQLPSMTSLSVLHMSNTQ-RTLDNIPTSLDDLHNLRDVDLSENNLP---IVPECLYKLRNLRRLNLSGNKI-- 257 (1255)
T ss_pred hhhHHHHhcCccchhhhhhhccccc-chhhcCCCchhhhhhhhhccccccCCC---cchHHHhhhhhhheeccCcCce--
Confidence 543 44557777788888888875 345567888999999999999976666 667777777777777 4455
Q ss_pred cccCcccCCCCCcceEEEeccccccccccCCcccccccccCCeeEecc
Q 003890 727 QEFVESEMSLPLLQLLDLEESDEEDDERSDILEILQDINDFVHESEEA 774 (788)
Q Consensus 727 ~~lp~~l~~l~~L~~L~L~~~~l~~~~~~~~l~~l~~L~~L~~L~L~~ 774 (788)
..+.-..+.-.+|++|+||.|+++. .+..+.+|+.|+.|.+.+
T Consensus 258 teL~~~~~~W~~lEtLNlSrNQLt~-----LP~avcKL~kL~kLy~n~ 300 (1255)
T KOG0444|consen 258 TELNMTEGEWENLETLNLSRNQLTV-----LPDAVCKLTKLTKLYANN 300 (1255)
T ss_pred eeeeccHHHHhhhhhhccccchhcc-----chHHHhhhHHHHHHHhcc
Confidence 4443333334555556666665553 123355555555555443
No 9
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.67 E-value=1.4e-18 Score=176.36 Aligned_cols=256 Identities=21% Similarity=0.257 Sum_probs=180.4
Q ss_pred CceeEEEeecCcccccc-ccccccccceEEecCCCCchhhhhhhhhhhcCCccccEEEecCCCCCCCCccccCCCCccEE
Q 003890 498 ANVKWCYIMKDLIEFFS-LEHSDIYLQSFLNHSSESDHLALIDCENFCEKFKHLRILNLGSAVLVQFPPGLENLFHLKYL 576 (788)
Q Consensus 498 ~~~r~Ls~~~~~~~~~~-~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~i~~L~~L~~L 576 (788)
.++..|.++.|.+.+.| +.+ |+.|..|.+..+.. ...+....+++.+|.+|||..|++++.|+.++.|.+|.+|
T Consensus 206 ~~L~~LyL~~Nki~~lPef~g-cs~L~Elh~g~N~i----~~lpae~~~~L~~l~vLDLRdNklke~Pde~clLrsL~rL 280 (565)
T KOG0472|consen 206 ESLELLYLRRNKIRFLPEFPG-CSLLKELHVGENQI----EMLPAEHLKHLNSLLVLDLRDNKLKEVPDEICLLRSLERL 280 (565)
T ss_pred hhhHHHHhhhcccccCCCCCc-cHHHHHHHhcccHH----HhhHHHHhcccccceeeeccccccccCchHHHHhhhhhhh
Confidence 45556667777776666 666 88888877766554 2223366678999999999999999999999999999999
Q ss_pred EecCCCCcccChhhcCCCCCcEEEccCCCCcccchhhhc-----------------------------------------
Q 003890 577 KLNIPSLKCLPSLLCTLLNLQTLEMPSSYVDQSPEDIWM----------------------------------------- 615 (788)
Q Consensus 577 ~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~lp~~l~~----------------------------------------- 615 (788)
++++|.|+.+|.+++++ +|..|-+.||.+..+-..+-+
T Consensus 281 DlSNN~is~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~ 359 (565)
T KOG0472|consen 281 DLSNNDISSLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIY 359 (565)
T ss_pred cccCCccccCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchh
Confidence 99999999999999998 899998888866554333221
Q ss_pred -ccccceeeccCc-----------------------------cCCCCCcCCcCccccccccccc-c-ccccCccccCCCC
Q 003890 616 -MQKLMHLNFGSI-----------------------------TLPAPPKNYSSSLKNLIFISTL-N-PSSCTPDILGRLP 663 (788)
Q Consensus 616 -L~~L~~L~l~~~-----------------------------~~~~~i~~~~~~l~~L~~L~~~-~-~~~~~~~~l~~L~ 663 (788)
+.+.+.|++++- .+|..+ ..++.+++.-.. + ..++.+..++.++
T Consensus 360 ~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L----~~lkelvT~l~lsnn~isfv~~~l~~l~ 435 (565)
T KOG0472|consen 360 AIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRL----VELKELVTDLVLSNNKISFVPLELSQLQ 435 (565)
T ss_pred hhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHhhhhhhh----HHHHHHHHHHHhhcCccccchHHHHhhh
Confidence 122222222210 111111 222222221111 1 2234444577888
Q ss_pred CCCeEEEEccCCcChhcHHHhccCCCCCCEEEeecCCCCCcccccccCCCccccccc---cccccccccCcc-cCCCCCc
Q 003890 664 NVQTLRISGDLSCYHSGVSKSLCELHKLECLKLVNERKPSRMVLYEYQFPPTDMARI---LSQLIRQEFVES-EMSLPLL 739 (788)
Q Consensus 664 ~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~l~~~~~L~~L---~~~l~~~~lp~~-l~~l~~L 739 (788)
+|..|+++++- ...+|..++.+..|+.|+|+.+... ..++.+..+..|+.+ .+++ ..+|.. +.++.+|
T Consensus 436 kLt~L~L~NN~---Ln~LP~e~~~lv~Lq~LnlS~NrFr---~lP~~~y~lq~lEtllas~nqi--~~vd~~~l~nm~nL 507 (565)
T KOG0472|consen 436 KLTFLDLSNNL---LNDLPEEMGSLVRLQTLNLSFNRFR---MLPECLYELQTLETLLASNNQI--GSVDPSGLKNMRNL 507 (565)
T ss_pred cceeeecccch---hhhcchhhhhhhhhheecccccccc---cchHHHhhHHHHHHHHhccccc--cccChHHhhhhhhc
Confidence 89999999884 7888888999999999999976544 445555556677777 5777 666544 8889999
Q ss_pred ceEEEeccccccccccCCcccccccccCCeeEecccC
Q 003890 740 QLLDLEESDEEDDERSDILEILQDINDFVHESEEAID 776 (788)
Q Consensus 740 ~~L~L~~~~l~~~~~~~~l~~l~~L~~L~~L~L~~~~ 776 (788)
.+|+|.+|.+.. .+|.+|++.+|++|.|.|++
T Consensus 508 ~tLDL~nNdlq~-----IPp~LgnmtnL~hLeL~gNp 539 (565)
T KOG0472|consen 508 TTLDLQNNDLQQ-----IPPILGNMTNLRHLELDGNP 539 (565)
T ss_pred ceeccCCCchhh-----CChhhccccceeEEEecCCc
Confidence 999999999987 47889999999999999986
No 10
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.66 E-value=1.3e-17 Score=176.65 Aligned_cols=154 Identities=19% Similarity=0.226 Sum_probs=64.8
Q ss_pred hhhcCCccccEEEecCCCCCCCCcc-ccCCCCccEEEecCCCCccc-ChhhcCCCCCcEEEccCCCCcccchh-hhcccc
Q 003890 542 NFCEKFKHLRILNLGSAVLVQFPPG-LENLFHLKYLKLNIPSLKCL-PSLLCTLLNLQTLEMPSSYVDQSPED-IWMMQK 618 (788)
Q Consensus 542 ~~~~~l~~L~~L~L~~~~l~~lp~~-i~~L~~L~~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~~l~~lp~~-l~~L~~ 618 (788)
+.|..+.+|..|.|+.|.++.+|.. |.+|++|+.|+|..|+|... ...|..|.+|+.|.|..|.+..+.++ |..|.+
T Consensus 191 ~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~k 270 (873)
T KOG4194|consen 191 GHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEK 270 (873)
T ss_pred ccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecc
Confidence 4444444444444444444444422 33344444444444444433 22344444444444444444444332 444444
Q ss_pred cceeeccCccCCCCCcCCcCcccccccccccccccc--CccccCCCCCCCeEEEEccCCcChhcHHHhccCCCCCCEEEe
Q 003890 619 LMHLNFGSITLPAPPKNYSSSLKNLIFISTLNPSSC--TPDILGRLPNVQTLRISGDLSCYHSGVSKSLCELHKLECLKL 696 (788)
Q Consensus 619 L~~L~l~~~~~~~~i~~~~~~l~~L~~L~~~~~~~~--~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~L 696 (788)
+++|+|..|++...-..|+-+|++|+.|+++.+... .+......++|++|+++.+. ...-.+.+|..+..|+.|.|
T Consensus 271 me~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~--i~~l~~~sf~~L~~Le~LnL 348 (873)
T KOG4194|consen 271 MEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNR--ITRLDEGSFRVLSQLEELNL 348 (873)
T ss_pred cceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccc--cccCChhHHHHHHHhhhhcc
Confidence 444444444333222222344445555544433222 22223334444445544444 22222333444444444444
Q ss_pred e
Q 003890 697 V 697 (788)
Q Consensus 697 ~ 697 (788)
+
T Consensus 349 s 349 (873)
T KOG4194|consen 349 S 349 (873)
T ss_pred c
Confidence 4
No 11
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.62 E-value=3.8e-15 Score=184.77 Aligned_cols=246 Identities=14% Similarity=0.086 Sum_probs=178.2
Q ss_pred ccccccccceEEecCCCCc--hhhhhhhhhhhcCCc-cccEEEecCCCCCCCCccccCCCCccEEEecCCCCcccChhhc
Q 003890 515 LEHSDIYLQSFLNHSSESD--HLALIDCENFCEKFK-HLRILNLGSAVLVQFPPGLENLFHLKYLKLNIPSLKCLPSLLC 591 (788)
Q Consensus 515 ~~~~~~~Lr~L~l~~~~~~--~~~~~~~~~~~~~l~-~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~lp~~i~ 591 (788)
+.. +++|+.|.+..+... ......+|..|..++ +|+.|++.++++..+|..+ ...+|+.|++.+|.+..+|..+.
T Consensus 554 F~~-m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s~l~~L~~~~~ 631 (1153)
T PLN03210 554 FKG-MRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNF-RPENLVKLQMQGSKLEKLWDGVH 631 (1153)
T ss_pred Hhc-CccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcC-CccCCcEEECcCccccccccccc
Confidence 556 889999988765321 111112345555554 6999999999999999887 57899999999999999999999
Q ss_pred CCCCCcEEEccCC-CCcccchhhhcccccceeeccCccCCCCCcCCcCcccccccccccccc-ccCccccCCCCCCCeEE
Q 003890 592 TLLNLQTLEMPSS-YVDQSPEDIWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFISTLNPS-SCTPDILGRLPNVQTLR 669 (788)
Q Consensus 592 ~L~~L~~L~L~~~-~l~~lp~~l~~L~~L~~L~l~~~~~~~~i~~~~~~l~~L~~L~~~~~~-~~~~~~l~~L~~L~~L~ 669 (788)
.+.+|+.|+|++| .+..+|. ++.+++|+.|++++|.....+|..++++++|+.|++.++. ...++.-.++++|+.|+
T Consensus 632 ~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i~l~sL~~L~ 710 (1153)
T PLN03210 632 SLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGINLKSLYRLN 710 (1153)
T ss_pred cCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcCCCCCCCEEe
Confidence 9999999999988 6888886 8899999999999886555556566999999999998643 22333333788899999
Q ss_pred EEccCCcChhcHHHhccCCCCCCEEEeecCCCCCcccccc------------------------------cCCCcccccc
Q 003890 670 ISGDLSCYHSGVSKSLCELHKLECLKLVNERKPSRMVLYE------------------------------YQFPPTDMAR 719 (788)
Q Consensus 670 l~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~------------------------------~l~~~~~L~~ 719 (788)
+++|. ....+|.. ..+|+.|+|+++... ..+. ....+++|+.
T Consensus 711 Lsgc~--~L~~~p~~---~~nL~~L~L~~n~i~---~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~ 782 (1153)
T PLN03210 711 LSGCS--RLKSFPDI---STNISWLDLDETAIE---EFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTR 782 (1153)
T ss_pred CCCCC--Cccccccc---cCCcCeeecCCCccc---cccccccccccccccccccchhhccccccccchhhhhccccchh
Confidence 99886 33333322 245666666643211 0000 0112457777
Q ss_pred c--cc--cccccccCcccCCCCCcceEEEeccccccccccCCcccccccccCCeeEecccCch
Q 003890 720 I--LS--QLIRQEFVESEMSLPLLQLLDLEESDEEDDERSDILEILQDINDFVHESEEAIDTF 778 (788)
Q Consensus 720 L--~~--~l~~~~lp~~l~~l~~L~~L~L~~~~l~~~~~~~~l~~l~~L~~L~~L~L~~~~~l 778 (788)
| .+ .+ ..+|.+++++++|+.|+|++|.... .+|...++++|+.|+|++|..+
T Consensus 783 L~Ls~n~~l--~~lP~si~~L~~L~~L~Ls~C~~L~-----~LP~~~~L~sL~~L~Ls~c~~L 838 (1153)
T PLN03210 783 LFLSDIPSL--VELPSSIQNLHKLEHLEIENCINLE-----TLPTGINLESLESLDLSGCSRL 838 (1153)
T ss_pred eeCCCCCCc--cccChhhhCCCCCCEEECCCCCCcC-----eeCCCCCccccCEEECCCCCcc
Confidence 7 22 24 6689899999999999999997655 3565558899999999998765
No 12
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.59 E-value=2.6e-17 Score=167.25 Aligned_cols=236 Identities=18% Similarity=0.183 Sum_probs=179.6
Q ss_pred eeEEEeecCccccc-c-ccccccccceEEecCCCCchhhhhhhhhhhcCCccccEEEecCCCCCCCCccccCCCCccEEE
Q 003890 500 VKWCYIMKDLIEFF-S-LEHSDIYLQSFLNHSSESDHLALIDCENFCEKFKHLRILNLGSAVLVQFPPGLENLFHLKYLK 577 (788)
Q Consensus 500 ~r~Ls~~~~~~~~~-~-~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~ 577 (788)
...+.++.+..... + ... +..+.++..+.+.. ..+|.....+..|+.|++++|.+.++|++++.+..|..|+
T Consensus 70 l~vl~~~~n~l~~lp~aig~-l~~l~~l~vs~n~l-----s~lp~~i~s~~~l~~l~~s~n~~~el~~~i~~~~~l~dl~ 143 (565)
T KOG0472|consen 70 LTVLNVHDNKLSQLPAAIGE-LEALKSLNVSHNKL-----SELPEQIGSLISLVKLDCSSNELKELPDSIGRLLDLEDLD 143 (565)
T ss_pred eeEEEeccchhhhCCHHHHH-HHHHHHhhcccchH-----hhccHHHhhhhhhhhhhccccceeecCchHHHHhhhhhhh
Confidence 34455555543332 2 334 56666666665553 1345777788888889999998888888899988888888
Q ss_pred ecCCCCcccChhhcCCCCCcEEEccCCCCcccchhhhcccccceeeccCc---cCCCCCcCCcCcccccccccccccccc
Q 003890 578 LNIPSLKCLPSLLCTLLNLQTLEMPSSYVDQSPEDIWMMQKLMHLNFGSI---TLPAPPKNYSSSLKNLIFISTLNPSSC 654 (788)
Q Consensus 578 L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~lp~~l~~L~~L~~L~l~~~---~~~~~i~~~~~~l~~L~~L~~~~~~~~ 654 (788)
..+|++.++|+.++++.+|..|++.+|++..+|+..-+++.|++|+...| .+|+.+ +.+.+|..|++..+...
T Consensus 144 ~~~N~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L~tlP~~l----g~l~~L~~LyL~~Nki~ 219 (565)
T KOG0472|consen 144 ATNNQISSLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNLLETLPPEL----GGLESLELLYLRRNKIR 219 (565)
T ss_pred ccccccccCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchhhhhcCChhh----cchhhhHHHHhhhcccc
Confidence 88888999998888888899999999988888887666889999988765 455566 88888888888888887
Q ss_pred CccccCCCCCCCeEEEEccCCcChhcHHHhc-cCCCCCCEEEeecCCCCCcccccccCCCccccccccccccccccCccc
Q 003890 655 TPDILGRLPNVQTLRISGDLSCYHSGVSKSL-CELHKLECLKLVNERKPSRMVLYEYQFPPTDMARILSQLIRQEFVESE 733 (788)
Q Consensus 655 ~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~l-~~l~~L~~L~L~~~~~~~~~~~~~~l~~~~~L~~L~~~l~~~~lp~~l 733 (788)
++++|+.++.|++|+++.+. .+.+++.. .++++|..|+|.+ |++ .++|..+
T Consensus 220 ~lPef~gcs~L~Elh~g~N~---i~~lpae~~~~L~~l~vLDLRd-----------------------Nkl--ke~Pde~ 271 (565)
T KOG0472|consen 220 FLPEFPGCSLLKELHVGENQ---IEMLPAEHLKHLNSLLVLDLRD-----------------------NKL--KEVPDEI 271 (565)
T ss_pred cCCCCCccHHHHHHHhcccH---HHhhHHHHhcccccceeeeccc-----------------------ccc--ccCchHH
Confidence 88889999889998888875 66666654 4788888888874 344 6677777
Q ss_pred CCCCCcceEEEeccccccccccCCcccccccccCCeeEecccCchh
Q 003890 734 MSLPLLQLLDLEESDEEDDERSDILEILQDINDFVHESEEAIDTFF 779 (788)
Q Consensus 734 ~~l~~L~~L~L~~~~l~~~~~~~~l~~l~~L~~L~~L~L~~~~~l~ 779 (788)
.-+.+|++|++++|.++. ..+.+|+| +|+.|-+.|+|--+
T Consensus 272 clLrsL~rLDlSNN~is~-----Lp~sLgnl-hL~~L~leGNPlrT 311 (565)
T KOG0472|consen 272 CLLRSLERLDLSNNDISS-----LPYSLGNL-HLKFLALEGNPLRT 311 (565)
T ss_pred HHhhhhhhhcccCCcccc-----CCcccccc-eeeehhhcCCchHH
Confidence 777888888888888875 35568888 88888888887544
No 13
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.55 E-value=5.2e-16 Score=173.24 Aligned_cols=263 Identities=18% Similarity=0.204 Sum_probs=195.6
Q ss_pred CceeEEEeecCcccccc-ccccccccceEEecCCCCchhhhhhhhhhhcCCccccEEEecCCCCCCCCccccCCCCccEE
Q 003890 498 ANVKWCYIMKDLIEFFS-LEHSDIYLQSFLNHSSESDHLALIDCENFCEKFKHLRILNLGSAVLVQFPPGLENLFHLKYL 576 (788)
Q Consensus 498 ~~~r~Ls~~~~~~~~~~-~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~i~~L~~L~~L 576 (788)
.+.++|....+...... -.. ..+|..+.+..+.. . .+|.++..+.+|..|+..+|.+..+|..+.....|++|
T Consensus 219 ~~l~~L~a~~n~l~~~~~~p~-p~nl~~~dis~n~l----~-~lp~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l 292 (1081)
T KOG0618|consen 219 PSLTALYADHNPLTTLDVHPV-PLNLQYLDISHNNL----S-NLPEWIGACANLEALNANHNRLVALPLRISRITSLVSL 292 (1081)
T ss_pred cchheeeeccCcceeeccccc-cccceeeecchhhh----h-cchHHHHhcccceEecccchhHHhhHHHHhhhhhHHHH
Confidence 34566666655444221 222 45666666665543 2 23478888888888888888888888888888888888
Q ss_pred EecCCCCcccChhhcCCCCCcEEEccCCCCcccchh-hhcccc-cceeeccCccCCCCCcCC-cCccccccccccccc--
Q 003890 577 KLNIPSLKCLPSLLCTLLNLQTLEMPSSYVDQSPED-IWMMQK-LMHLNFGSITLPAPPKNY-SSSLKNLIFISTLNP-- 651 (788)
Q Consensus 577 ~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~lp~~-l~~L~~-L~~L~l~~~~~~~~i~~~-~~~l~~L~~L~~~~~-- 651 (788)
.+..|.++.+|+....++.|++|+|..|++..+|+. +..+.. |+.|+.+.++++.. |.+ -..++.|+.|++.++
T Consensus 293 ~~~~nel~yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~l-p~~~e~~~~~Lq~LylanN~L 371 (1081)
T KOG0618|consen 293 SAAYNELEYIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTL-PSYEENNHAALQELYLANNHL 371 (1081)
T ss_pred HhhhhhhhhCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhcccccc-ccccchhhHHHHHHHHhcCcc
Confidence 888888888888888888899999988888888874 333333 67777666655432 111 134567888877753
Q ss_pred cccCccccCCCCCCCeEEEEccCCcChhcHH-HhccCCCCCCEEEeecCCCCCcccccccCCCccccccc---ccccccc
Q 003890 652 SSCTPDILGRLPNVQTLRISGDLSCYHSGVS-KSLCELHKLECLKLVNERKPSRMVLYEYQFPPTDMARI---LSQLIRQ 727 (788)
Q Consensus 652 ~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~-~~l~~l~~L~~L~L~~~~~~~~~~~~~~l~~~~~L~~L---~~~l~~~ 727 (788)
....++-|-++.+|+.|++++|. ...+| +.+.++..|+.|+|+|+... ..++.+..+..|++| .|++ .
T Consensus 372 td~c~p~l~~~~hLKVLhLsyNr---L~~fpas~~~kle~LeeL~LSGNkL~---~Lp~tva~~~~L~tL~ahsN~l--~ 443 (1081)
T KOG0618|consen 372 TDSCFPVLVNFKHLKVLHLSYNR---LNSFPASKLRKLEELEELNLSGNKLT---TLPDTVANLGRLHTLRAHSNQL--L 443 (1081)
T ss_pred cccchhhhccccceeeeeecccc---cccCCHHHHhchHHhHHHhcccchhh---hhhHHHHhhhhhHHHhhcCCce--e
Confidence 34566778899999999999997 44444 46788999999999987666 566788889999999 6778 8
Q ss_pred ccCcccCCCCCcceEEEeccccccccccCCcccccccccCCeeEecccCchhh
Q 003890 728 EFVESEMSLPLLQLLDLEESDEEDDERSDILEILQDINDFVHESEEAIDTFFI 780 (788)
Q Consensus 728 ~lp~~l~~l~~L~~L~L~~~~l~~~~~~~~l~~l~~L~~L~~L~L~~~~~l~~ 780 (788)
.+| -+..++.|+.+|++.|.+... .++..-.-|+|++|+|+|+..+.+
T Consensus 444 ~fP-e~~~l~qL~~lDlS~N~L~~~----~l~~~~p~p~LkyLdlSGN~~l~~ 491 (1081)
T KOG0618|consen 444 SFP-ELAQLPQLKVLDLSCNNLSEV----TLPEALPSPNLKYLDLSGNTRLVF 491 (1081)
T ss_pred ech-hhhhcCcceEEecccchhhhh----hhhhhCCCcccceeeccCCccccc
Confidence 899 688999999999999999876 565544448999999999986654
No 14
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.42 E-value=3e-15 Score=135.40 Aligned_cols=160 Identities=21% Similarity=0.332 Sum_probs=114.7
Q ss_pred ccccccccceEEecCCCCchhhhhhhhhhhcCCccccEEEecCCCCCCCCccccCCCCccEEEecCCCCcccChhhcCCC
Q 003890 515 LEHSDIYLQSFLNHSSESDHLALIDCENFCEKFKHLRILNLGSAVLVQFPPGLENLFHLKYLKLNIPSLKCLPSLLCTLL 594 (788)
Q Consensus 515 ~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~lp~~i~~L~ 594 (788)
... ++++..|.++++... +.|+.+..+.+|++|++.+|+++++|.+++.|..|+.|++.-|++..+|..++.++
T Consensus 29 Lf~-~s~ITrLtLSHNKl~-----~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p 102 (264)
T KOG0617|consen 29 LFN-MSNITRLTLSHNKLT-----VVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGFGSFP 102 (264)
T ss_pred ccc-hhhhhhhhcccCcee-----ecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccccCCCc
Confidence 344 666666777666541 33466777888888888888888888888888888888888788888888888888
Q ss_pred CCcEEEccCCCC--cccchhhhcccccceeeccCcc---CCCCCcCCcCccccccccccccc-cccCccccCCCCCCCeE
Q 003890 595 NLQTLEMPSSYV--DQSPEDIWMMQKLMHLNFGSIT---LPAPPKNYSSSLKNLIFISTLNP-SSCTPDILGRLPNVQTL 668 (788)
Q Consensus 595 ~L~~L~L~~~~l--~~lp~~l~~L~~L~~L~l~~~~---~~~~i~~~~~~l~~L~~L~~~~~-~~~~~~~l~~L~~L~~L 668 (788)
-|++|||..|++ ..+|..|..|+.|+-|+++.|. +|+.+ +++++||.|.+.++ -...+.+++.|+.|++|
T Consensus 103 ~levldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dv----g~lt~lqil~lrdndll~lpkeig~lt~lrel 178 (264)
T KOG0617|consen 103 ALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDV----GKLTNLQILSLRDNDLLSLPKEIGDLTRLREL 178 (264)
T ss_pred hhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcccCChhh----hhhcceeEEeeccCchhhCcHHHHHHHHHHHH
Confidence 888888877744 4567777778888888887763 35555 88888888877754 34566677888888888
Q ss_pred EEEccCCcChhcHHHhccC
Q 003890 669 RISGDLSCYHSGVSKSLCE 687 (788)
Q Consensus 669 ~l~~~~~~~~~~~~~~l~~ 687 (788)
+|.++. ...+|..+++
T Consensus 179 hiqgnr---l~vlppel~~ 194 (264)
T KOG0617|consen 179 HIQGNR---LTVLPPELAN 194 (264)
T ss_pred hcccce---eeecChhhhh
Confidence 888775 4455554443
No 15
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.41 E-value=5.9e-13 Score=154.85 Aligned_cols=223 Identities=17% Similarity=0.163 Sum_probs=105.2
Q ss_pred CCceeEEEeecCccccccccccccccceEEecCCCCchhhhhhhhhhhcCCccccEEEecCCCCCCCCccccCCCCccEE
Q 003890 497 PANVKWCYIMKDLIEFFSLEHSDIYLQSFLNHSSESDHLALIDCENFCEKFKHLRILNLGSAVLVQFPPGLENLFHLKYL 576 (788)
Q Consensus 497 ~~~~r~Ls~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~i~~L~~L~~L 576 (788)
+..++.|.+.+|.....+... +++|+.|.+.++... .+ |..+. .+|+.|+|++|.+..+|..+. .+|++|
T Consensus 198 p~~L~~L~Ls~N~LtsLP~~l-~~nL~~L~Ls~N~Lt-sL----P~~l~--~~L~~L~Ls~N~L~~LP~~l~--s~L~~L 267 (754)
T PRK15370 198 PEQITTLILDNNELKSLPENL-QGNIKTLYANSNQLT-SI----PATLP--DTIQEMELSINRITELPERLP--SALQSL 267 (754)
T ss_pred ccCCcEEEecCCCCCcCChhh-ccCCCEEECCCCccc-cC----Chhhh--ccccEEECcCCccCcCChhHh--CCCCEE
Confidence 345556666655544333222 445666666555431 11 11111 245666666666665555443 356666
Q ss_pred EecCCCCcccChhhcCCCCCcEEEccCCCCcccchhhhcccccceeeccCccCCCCCcCCcCccccccccccccccccCc
Q 003890 577 KLNIPSLKCLPSLLCTLLNLQTLEMPSSYVDQSPEDIWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFISTLNPSSCTP 656 (788)
Q Consensus 577 ~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~lp~~l~~L~~L~~L~l~~~~~~~~i~~~~~~l~~L~~L~~~~~~~~~~ 656 (788)
++++|.+..+|..+. .+|++|++++|.+..+|..+. ++|++|++++|.+.. +|.. -.++|+.|.+.++....+
T Consensus 268 ~Ls~N~L~~LP~~l~--~sL~~L~Ls~N~Lt~LP~~lp--~sL~~L~Ls~N~Lt~-LP~~--l~~sL~~L~Ls~N~Lt~L 340 (754)
T PRK15370 268 DLFHNKISCLPENLP--EELRYLSVYDNSIRTLPAHLP--SGITHLNVQSNSLTA-LPET--LPPGLKTLEAGENALTSL 340 (754)
T ss_pred ECcCCccCccccccC--CCCcEEECCCCccccCcccch--hhHHHHHhcCCcccc-CCcc--ccccceeccccCCccccC
Confidence 666666666655443 356666666665555554332 345566665554431 2211 113455555544332212
Q ss_pred c-ccCCCCCCCeEEEEccCCcChhcHHHhccCCCCCCEEEeecCCCCCcccccccCCCccccccc---cccccccccCcc
Q 003890 657 D-ILGRLPNVQTLRISGDLSCYHSGVSKSLCELHKLECLKLVNERKPSRMVLYEYQFPPTDMARI---LSQLIRQEFVES 732 (788)
Q Consensus 657 ~-~l~~L~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~l~~~~~L~~L---~~~l~~~~lp~~ 732 (788)
+ .+ .++|+.|++++|. ...+|..+. ++|+.|+|+++... ..++.+ +.+|+.| .|++ ..+|..
T Consensus 341 P~~l--~~sL~~L~Ls~N~---L~~LP~~lp--~~L~~LdLs~N~Lt---~LP~~l--~~sL~~LdLs~N~L--~~LP~s 406 (754)
T PRK15370 341 PASL--PPELQVLDVSKNQ---ITVLPETLP--PTITTLDVSRNALT---NLPENL--PAALQIMQASRNNL--VRLPES 406 (754)
T ss_pred Chhh--cCcccEEECCCCC---CCcCChhhc--CCcCEEECCCCcCC---CCCHhH--HHHHHHHhhccCCc--ccCchh
Confidence 1 12 1456666666654 222333332 35666666644322 111111 1245555 4444 344433
Q ss_pred c----CCCCCcceEEEeccccc
Q 003890 733 E----MSLPLLQLLDLEESDEE 750 (788)
Q Consensus 733 l----~~l~~L~~L~L~~~~l~ 750 (788)
+ ..++++..|+|.+|++.
T Consensus 407 l~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 407 LPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred HHHHhhcCCCccEEEeeCCCcc
Confidence 2 23355566666666654
No 16
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.40 E-value=7.9e-15 Score=132.72 Aligned_cols=156 Identities=19% Similarity=0.234 Sum_probs=129.8
Q ss_pred hhcCCccccEEEecCCCCCCCCccccCCCCccEEEecCCCCcccChhhcCCCCCcEEEccCCCCcccchhhhccccccee
Q 003890 543 FCEKFKHLRILNLGSAVLVQFPPGLENLFHLKYLKLNIPSLKCLPSLLCTLLNLQTLEMPSSYVDQSPEDIWMMQKLMHL 622 (788)
Q Consensus 543 ~~~~l~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~lp~~l~~L~~L~~L 622 (788)
.+..+.++.-|-|++|.++.+|+.|..|.+|+.|++.+|+|+++|.+++.+++|++|++.-|.+..+|.+|+.++-|+.|
T Consensus 28 gLf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~levl 107 (264)
T KOG0617|consen 28 GLFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALEVL 107 (264)
T ss_pred cccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccccCCCchhhhh
Confidence 34456778889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccCccCCC-CCcCCcCccccccccccccccc-cCccccCCCCCCCeEEEEccCCcChhcHHHhccCCCCCCEEEeecCC
Q 003890 623 NFGSITLPA-PPKNYSSSLKNLIFISTLNPSS-CTPDILGRLPNVQTLRISGDLSCYHSGVSKSLCELHKLECLKLVNER 700 (788)
Q Consensus 623 ~l~~~~~~~-~i~~~~~~l~~L~~L~~~~~~~-~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~ 700 (788)
++..|++.+ .+|.-|..++.|+.|++.++.- -.+.+.++|++|+.|.+..+. .-.+|..++.+..|++|++.++.
T Consensus 108 dltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdnd---ll~lpkeig~lt~lrelhiqgnr 184 (264)
T KOG0617|consen 108 DLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDND---LLSLPKEIGDLTRLRELHIQGNR 184 (264)
T ss_pred hccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCc---hhhCcHHHHHHHHHHHHhcccce
Confidence 998664432 2333337778888888876554 356678999999988888875 67788888888888888888654
Q ss_pred C
Q 003890 701 K 701 (788)
Q Consensus 701 ~ 701 (788)
.
T Consensus 185 l 185 (264)
T KOG0617|consen 185 L 185 (264)
T ss_pred e
Confidence 3
No 17
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.37 E-value=3.1e-12 Score=147.92 Aligned_cols=233 Identities=15% Similarity=0.051 Sum_probs=141.6
Q ss_pred CCceeEEEeecCccccccccccccccceEEecCCCCchhhhhhhhhhhcCCccccEEEecCCCCCCCCccccCCCCccEE
Q 003890 497 PANVKWCYIMKDLIEFFSLEHSDIYLQSFLNHSSESDHLALIDCENFCEKFKHLRILNLGSAVLVQFPPGLENLFHLKYL 576 (788)
Q Consensus 497 ~~~~r~Ls~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~i~~L~~L~~L 576 (788)
+.+++.|.+..|....++ .. +++|+.|.+.+|... .+ |. ..++|+.|++++|.+..+|... ..|+.|
T Consensus 221 ~~~L~~L~L~~N~Lt~LP-~l-p~~Lk~LdLs~N~Lt-sL----P~---lp~sL~~L~Ls~N~L~~Lp~lp---~~L~~L 287 (788)
T PRK15387 221 PAHITTLVIPDNNLTSLP-AL-PPELRTLEVSGNQLT-SL----PV---LPPGLLELSIFSNPLTHLPALP---SGLCKL 287 (788)
T ss_pred hcCCCEEEccCCcCCCCC-CC-CCCCcEEEecCCccC-cc----cC---cccccceeeccCCchhhhhhch---hhcCEE
Confidence 446788888877655443 23 678888888887652 22 12 2357888888888888777533 467788
Q ss_pred EecCCCCcccChhhcCCCCCcEEEccCCCCcccchhhhcccccceeeccCccCCCCCcCCcCccccccccccccccccCc
Q 003890 577 KLNIPSLKCLPSLLCTLLNLQTLEMPSSYVDQSPEDIWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFISTLNPSSCTP 656 (788)
Q Consensus 577 ~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~lp~~l~~L~~L~~L~l~~~~~~~~i~~~~~~l~~L~~L~~~~~~~~~~ 656 (788)
++++|.+..+|.. +++|+.|++++|.+..+|... .+|+.|++++|.+. .+|. -..+|+.|+++++....+
T Consensus 288 ~Ls~N~Lt~LP~~---p~~L~~LdLS~N~L~~Lp~lp---~~L~~L~Ls~N~L~-~LP~---lp~~Lq~LdLS~N~Ls~L 357 (788)
T PRK15387 288 WIFGNQLTSLPVL---PPGLQELSVSDNQLASLPALP---SELCKLWAYNNQLT-SLPT---LPSGLQELSVSDNQLASL 357 (788)
T ss_pred ECcCCcccccccc---ccccceeECCCCccccCCCCc---ccccccccccCccc-cccc---cccccceEecCCCccCCC
Confidence 8888888888753 467889999888888877632 35677777777654 2432 124677787776544333
Q ss_pred cccCCCCCCCeEEEEccCCcChhcHHHhccCCCCCCEEEeecCCCCCcccccccCCCccccccc---cccccccccCccc
Q 003890 657 DILGRLPNVQTLRISGDLSCYHSGVSKSLCELHKLECLKLVNERKPSRMVLYEYQFPPTDMARI---LSQLIRQEFVESE 733 (788)
Q Consensus 657 ~~l~~L~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~l~~~~~L~~L---~~~l~~~~lp~~l 733 (788)
+.+ .++|+.|++++|. ...+|.. ..+|+.|+|+++... . +.. .+++|+.| .|.+ ..+|..
T Consensus 358 P~l--p~~L~~L~Ls~N~---L~~LP~l---~~~L~~LdLs~N~Lt---~-LP~--l~s~L~~LdLS~N~L--ssIP~l- 420 (788)
T PRK15387 358 PTL--PSELYKLWAYNNR---LTSLPAL---PSGLKELIVSGNRLT---S-LPV--LPSELKELMVSGNRL--TSLPML- 420 (788)
T ss_pred CCC--Ccccceehhhccc---cccCccc---ccccceEEecCCccc---C-CCC--cccCCCEEEccCCcC--CCCCcc-
Confidence 322 2456666666664 2233322 235777777754322 1 111 12456666 4555 455532
Q ss_pred CCCCCcceEEEeccccccccccCCcccccccccCCeeEecccC
Q 003890 734 MSLPLLQLLDLEESDEEDDERSDILEILQDINDFVHESEEAID 776 (788)
Q Consensus 734 ~~l~~L~~L~L~~~~l~~~~~~~~l~~l~~L~~L~~L~L~~~~ 776 (788)
+.+|+.|+|++|++.. .+..++++++|+.|+|++|+
T Consensus 421 --~~~L~~L~Ls~NqLt~-----LP~sl~~L~~L~~LdLs~N~ 456 (788)
T PRK15387 421 --PSGLLSLSVYRNQLTR-----LPESLIHLSSETTVNLEGNP 456 (788)
T ss_pred --hhhhhhhhhccCcccc-----cChHHhhccCCCeEECCCCC
Confidence 2456667777777663 23346667777777777664
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.32 E-value=2.7e-12 Score=149.32 Aligned_cols=243 Identities=15% Similarity=0.101 Sum_probs=171.8
Q ss_pred eeEEEeecCccccccccccccccceEEecCCCCchhhhhhhhhhhcCCccccEEEecCCCCCCCCccccCCCCccEEEec
Q 003890 500 VKWCYIMKDLIEFFSLEHSDIYLQSFLNHSSESDHLALIDCENFCEKFKHLRILNLGSAVLVQFPPGLENLFHLKYLKLN 579 (788)
Q Consensus 500 ~r~Ls~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~ 579 (788)
...|.+........|..- .++|+.|.+.++... .++ ..+ ..+|+.|++++|.++.+|..+. .+|+.|+|+
T Consensus 180 ~~~L~L~~~~LtsLP~~I-p~~L~~L~Ls~N~Lt-sLP----~~l--~~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls 249 (754)
T PRK15370 180 KTELRLKILGLTTIPACI-PEQITTLILDNNELK-SLP----ENL--QGNIKTLYANSNQLTSIPATLP--DTIQEMELS 249 (754)
T ss_pred ceEEEeCCCCcCcCCccc-ccCCcEEEecCCCCC-cCC----hhh--ccCCCEEECCCCccccCChhhh--ccccEEECc
Confidence 445666554444333223 567999999988763 222 222 2589999999999999998764 479999999
Q ss_pred CCCCcccChhhcCCCCCcEEEccCCCCcccchhhhcccccceeeccCccCCCCCcCCcCccccccccccccccccCcccc
Q 003890 580 IPSLKCLPSLLCTLLNLQTLEMPSSYVDQSPEDIWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFISTLNPSSCTPDIL 659 (788)
Q Consensus 580 ~~~i~~lp~~i~~L~~L~~L~L~~~~l~~lp~~l~~L~~L~~L~l~~~~~~~~i~~~~~~l~~L~~L~~~~~~~~~~~~l 659 (788)
+|.+..+|..+. .+|+.|++++|.+..+|..+. ++|+.|++++|.+.. +|..+. ++|+.|++.++....++.
T Consensus 250 ~N~L~~LP~~l~--s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N~Lt~-LP~~lp--~sL~~L~Ls~N~Lt~LP~- 321 (754)
T PRK15370 250 INRITELPERLP--SALQSLDLFHNKISCLPENLP--EELRYLSVYDNSIRT-LPAHLP--SGITHLNVQSNSLTALPE- 321 (754)
T ss_pred CCccCcCChhHh--CCCCEEECcCCccCccccccC--CCCcEEECCCCcccc-Ccccch--hhHHHHHhcCCccccCCc-
Confidence 999999998775 589999999999999998664 589999999987653 332222 467888887654433322
Q ss_pred CCCCCCCeEEEEccCCcChhcHHHhccCCCCCCEEEeecCCCCCcccccccCCCccccccc---cccccccccCcccCCC
Q 003890 660 GRLPNVQTLRISGDLSCYHSGVSKSLCELHKLECLKLVNERKPSRMVLYEYQFPPTDMARI---LSQLIRQEFVESEMSL 736 (788)
Q Consensus 660 ~~L~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~l~~~~~L~~L---~~~l~~~~lp~~l~~l 736 (788)
.-.++|+.|.+++|. ...++..+. ++|+.|+|+++... ..+..+ +++|+.| .|.+ ..+|..+.
T Consensus 322 ~l~~sL~~L~Ls~N~---Lt~LP~~l~--~sL~~L~Ls~N~L~---~LP~~l--p~~L~~LdLs~N~L--t~LP~~l~-- 387 (754)
T PRK15370 322 TLPPGLKTLEAGENA---LTSLPASLP--PELQVLDVSKNQIT---VLPETL--PPTITTLDVSRNAL--TNLPENLP-- 387 (754)
T ss_pred cccccceeccccCCc---cccCChhhc--CcccEEECCCCCCC---cCChhh--cCCcCEEECCCCcC--CCCCHhHH--
Confidence 123689999999986 444555553 68999999976543 223333 4689999 6777 67886553
Q ss_pred CCcceEEEeccccccccccCCccc-ccccccCCeeEecccC
Q 003890 737 PLLQLLDLEESDEEDDERSDILEI-LQDINDFVHESEEAID 776 (788)
Q Consensus 737 ~~L~~L~L~~~~l~~~~~~~~l~~-l~~L~~L~~L~L~~~~ 776 (788)
.+|+.|++++|++... ++.++. ++.+|++..|+|.+++
T Consensus 388 ~sL~~LdLs~N~L~~L--P~sl~~~~~~~~~l~~L~L~~Np 426 (754)
T PRK15370 388 AALQIMQASRNNLVRL--PESLPHFRGEGPQPTRIIVEYNP 426 (754)
T ss_pred HHHHHHhhccCCcccC--chhHHHHhhcCCCccEEEeeCCC
Confidence 4799999999998753 111222 3456899999999987
No 19
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.32 E-value=6.9e-12 Score=145.10 Aligned_cols=218 Identities=17% Similarity=0.106 Sum_probs=158.5
Q ss_pred CCCceeEEEeecCccccccccccccccceEEecCCCCchhhhhhhhhhhcCCccccEEEecCCCCCCCCccccCCCCccE
Q 003890 496 PPANVKWCYIMKDLIEFFSLEHSDIYLQSFLNHSSESDHLALIDCENFCEKFKHLRILNLGSAVLVQFPPGLENLFHLKY 575 (788)
Q Consensus 496 ~~~~~r~Ls~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~i~~L~~L~~ 575 (788)
.+.+++.|.+.+|.....+ .. .++|+.|.+.++... .+ |.. ..+|..|++++|.++.+|.. +++|++
T Consensus 240 lp~~Lk~LdLs~N~LtsLP-~l-p~sL~~L~Ls~N~L~-~L----p~l---p~~L~~L~Ls~N~Lt~LP~~---p~~L~~ 306 (788)
T PRK15387 240 LPPELRTLEVSGNQLTSLP-VL-PPGLLELSIFSNPLT-HL----PAL---PSGLCKLWIFGNQLTSLPVL---PPGLQE 306 (788)
T ss_pred CCCCCcEEEecCCccCccc-Cc-ccccceeeccCCchh-hh----hhc---hhhcCEEECcCCcccccccc---ccccce
Confidence 3568999999988766544 23 678999999887652 22 122 35688999999999988863 468999
Q ss_pred EEecCCCCcccChhhcCCCCCcEEEccCCCCcccchhhhcccccceeeccCccCCCCCcCCcCccccccccccccccccC
Q 003890 576 LKLNIPSLKCLPSLLCTLLNLQTLEMPSSYVDQSPEDIWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFISTLNPSSCT 655 (788)
Q Consensus 576 L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~lp~~l~~L~~L~~L~l~~~~~~~~i~~~~~~l~~L~~L~~~~~~~~~ 655 (788)
|++++|.+..+|... .+|+.|++++|.+..+|.. ..+|++|++++|.+.. +|.. ..+|+.|.+.++....
T Consensus 307 LdLS~N~L~~Lp~lp---~~L~~L~Ls~N~L~~LP~l---p~~Lq~LdLS~N~Ls~-LP~l---p~~L~~L~Ls~N~L~~ 376 (788)
T PRK15387 307 LSVSDNQLASLPALP---SELCKLWAYNNQLTSLPTL---PSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLTS 376 (788)
T ss_pred eECCCCccccCCCCc---ccccccccccCcccccccc---ccccceEecCCCccCC-CCCC---Ccccceehhhcccccc
Confidence 999999999988633 4578899999999888862 2589999999987653 4432 2456666666544333
Q ss_pred ccccCCCCCCCeEEEEccCCcChhcHHHhccCCCCCCEEEeecCCCCCcccccccCCCccccccc---cccccccccCcc
Q 003890 656 PDILGRLPNVQTLRISGDLSCYHSGVSKSLCELHKLECLKLVNERKPSRMVLYEYQFPPTDMARI---LSQLIRQEFVES 732 (788)
Q Consensus 656 ~~~l~~L~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~l~~~~~L~~L---~~~l~~~~lp~~ 732 (788)
++.+ ..+|+.|++++|. ...+|.. .++|+.|+++++... ..+ . .+.+|+.| .|++ ..+|..
T Consensus 377 LP~l--~~~L~~LdLs~N~---Lt~LP~l---~s~L~~LdLS~N~Ls---sIP-~--l~~~L~~L~Ls~NqL--t~LP~s 440 (788)
T PRK15387 377 LPAL--PSGLKELIVSGNR---LTSLPVL---PSELKELMVSGNRLT---SLP-M--LPSGLLSLSVYRNQL--TRLPES 440 (788)
T ss_pred Cccc--ccccceEEecCCc---ccCCCCc---ccCCCEEEccCCcCC---CCC-c--chhhhhhhhhccCcc--cccChH
Confidence 3332 3579999999986 3334432 357999999976543 222 1 14578888 7788 789999
Q ss_pred cCCCCCcceEEEeccccccc
Q 003890 733 EMSLPLLQLLDLEESDEEDD 752 (788)
Q Consensus 733 l~~l~~L~~L~L~~~~l~~~ 752 (788)
+..+++|+.|+|++|++.+.
T Consensus 441 l~~L~~L~~LdLs~N~Ls~~ 460 (788)
T PRK15387 441 LIHLSSETTVNLEGNPLSER 460 (788)
T ss_pred HhhccCCCeEECCCCCCCch
Confidence 99999999999999999865
No 20
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.29 E-value=1.1e-13 Score=155.05 Aligned_cols=240 Identities=16% Similarity=0.158 Sum_probs=179.4
Q ss_pred ccccceEEecCCCCchhhhhhhhhhhcCCccccEEEecCCCCCCCCccccCCCCccEEEecCCCCcccChhhcCCCCCcE
Q 003890 519 DIYLQSFLNHSSESDHLALIDCENFCEKFKHLRILNLGSAVLVQFPPGLENLFHLKYLKLNIPSLKCLPSLLCTLLNLQT 598 (788)
Q Consensus 519 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~lp~~i~~L~~L~~ 598 (788)
-++|+.|....+..... ..-..-.+|.+++++.|.++.+|+.++.+.+|..++...|.+..+|..+....+|+.
T Consensus 218 g~~l~~L~a~~n~l~~~------~~~p~p~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~ 291 (1081)
T KOG0618|consen 218 GPSLTALYADHNPLTTL------DVHPVPLNLQYLDISHNNLSNLPEWIGACANLEALNANHNRLVALPLRISRITSLVS 291 (1081)
T ss_pred CcchheeeeccCcceee------ccccccccceeeecchhhhhcchHHHHhcccceEecccchhHHhhHHHHhhhhhHHH
Confidence 56777777777665311 112233578888999998888888888899999999988888888888888888999
Q ss_pred EEccCCCCcccchhhhcccccceeeccCccCCCCCcCCcCcccc-ccccccccccccCccccC--CCCCCCeEEEEccCC
Q 003890 599 LEMPSSYVDQSPEDIWMMQKLMHLNFGSITLPAPPKNYSSSLKN-LIFISTLNPSSCTPDILG--RLPNVQTLRISGDLS 675 (788)
Q Consensus 599 L~L~~~~l~~lp~~l~~L~~L~~L~l~~~~~~~~i~~~~~~l~~-L~~L~~~~~~~~~~~~l~--~L~~L~~L~l~~~~~ 675 (788)
|.+..|.+..+|.....+++|++|++..|.++.-.+.+|..+.. |..|..+.+........+ .++.|+.|.+.+|.
T Consensus 292 l~~~~nel~yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~- 370 (1081)
T KOG0618|consen 292 LSAAYNELEYIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNH- 370 (1081)
T ss_pred HHhhhhhhhhCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCc-
Confidence 98888888888887788889999998888776433222233222 444444433333333332 34567888888887
Q ss_pred cChhcHHHhccCCCCCCEEEeecCCCCCcccccccCCCccccccc---cccccccccCcccCCCCCcceEEEeccccccc
Q 003890 676 CYHSGVSKSLCELHKLECLKLVNERKPSRMVLYEYQFPPTDMARI---LSQLIRQEFVESEMSLPLLQLLDLEESDEEDD 752 (788)
Q Consensus 676 ~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~l~~~~~L~~L---~~~l~~~~lp~~l~~l~~L~~L~L~~~~l~~~ 752 (788)
..+.....+.++++|+.|+|+.+...+ ..-..+..++.|++| .|.+ ..+|..+..+..|++|...+|.+.
T Consensus 371 -Ltd~c~p~l~~~~hLKVLhLsyNrL~~--fpas~~~kle~LeeL~LSGNkL--~~Lp~tva~~~~L~tL~ahsN~l~-- 443 (1081)
T KOG0618|consen 371 -LTDSCFPVLVNFKHLKVLHLSYNRLNS--FPASKLRKLEELEELNLSGNKL--TTLPDTVANLGRLHTLRAHSNQLL-- 443 (1081)
T ss_pred -ccccchhhhccccceeeeeeccccccc--CCHHHHhchHHhHHHhcccchh--hhhhHHHHhhhhhHHHhhcCCcee--
Confidence 667777888999999999999764331 223445667788888 7788 899999999999999999999998
Q ss_pred cccCCcccccccccCCeeEecccC
Q 003890 753 ERSDILEILQDINDFVHESEEAID 776 (788)
Q Consensus 753 ~~~~~l~~l~~L~~L~~L~L~~~~ 776 (788)
.+|.+.++|.|+.+|++.+.
T Consensus 444 ----~fPe~~~l~qL~~lDlS~N~ 463 (1081)
T KOG0618|consen 444 ----SFPELAQLPQLKVLDLSCNN 463 (1081)
T ss_pred ----echhhhhcCcceEEecccch
Confidence 57899999999999999874
No 21
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.16 E-value=1.4e-11 Score=132.35 Aligned_cols=111 Identities=16% Similarity=0.120 Sum_probs=50.6
Q ss_pred cCCCCCCCeEEEEccCC--cChhcHHHhccCCCCCCEEEeecCCCCCcccccccCC-----Cccccccc---ccccc---
Q 003890 659 LGRLPNVQTLRISGDLS--CYHSGVSKSLCELHKLECLKLVNERKPSRMVLYEYQF-----PPTDMARI---LSQLI--- 725 (788)
Q Consensus 659 l~~L~~L~~L~l~~~~~--~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~l~-----~~~~L~~L---~~~l~--- 725 (788)
+..+++|+.|++++|.- .....+...+..+++|+.|+++++.... ..+..+. +.++|++| .+.+.
T Consensus 189 l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~--~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~ 266 (319)
T cd00116 189 LKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTD--AGAAALASALLSPNISLLTLSLSCNDITDDG 266 (319)
T ss_pred HHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCch--HHHHHHHHHHhccCCCceEEEccCCCCCcHH
Confidence 34445666666666641 1122334455566667777776543220 0010000 12344444 22221
Q ss_pred ccccCcccCCCCCcceEEEeccccccccccCCcc----ccccc-ccCCeeEeccc
Q 003890 726 RQEFVESEMSLPLLQLLDLEESDEEDDERSDILE----ILQDI-NDFVHESEEAI 775 (788)
Q Consensus 726 ~~~lp~~l~~l~~L~~L~L~~~~l~~~~~~~~l~----~l~~L-~~L~~L~L~~~ 775 (788)
...++..+..+++|++|++++|.+... ... .+... +.|++|++.+.
T Consensus 267 ~~~l~~~~~~~~~L~~l~l~~N~l~~~----~~~~~~~~~~~~~~~~~~~~~~~~ 317 (319)
T cd00116 267 AKDLAEVLAEKESLLELDLRGNKFGEE----GAQLLAESLLEPGNELESLWVKDD 317 (319)
T ss_pred HHHHHHHHhcCCCccEEECCCCCCcHH----HHHHHHHHHhhcCCchhhcccCCC
Confidence 012222334456677777777776643 211 12223 56666666554
No 22
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.15 E-value=1.4e-11 Score=132.33 Aligned_cols=228 Identities=18% Similarity=0.109 Sum_probs=120.6
Q ss_pred ccccceEEecCCCCc--hhhhhhhhhhhcCCccccEEEecCCCCC-CCCccccCCCC---ccEEEecCCCCc-----ccC
Q 003890 519 DIYLQSFLNHSSESD--HLALIDCENFCEKFKHLRILNLGSAVLV-QFPPGLENLFH---LKYLKLNIPSLK-----CLP 587 (788)
Q Consensus 519 ~~~Lr~L~l~~~~~~--~~~~~~~~~~~~~l~~L~~L~L~~~~l~-~lp~~i~~L~~---L~~L~L~~~~i~-----~lp 587 (788)
.++++.+.+.++... ......++..+..+++|+.|++++|.+. ..+..+..+.+ |++|++++|.+. .++
T Consensus 50 ~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~ 129 (319)
T cd00116 50 QPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLA 129 (319)
T ss_pred CCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHH
Confidence 455666666555442 1222233455666777777777777765 33334444443 777777777655 223
Q ss_pred hhhcCC-CCCcEEEccCCCCc-----ccchhhhcccccceeeccCccCCCC----CcCCcCcccccccccccccccc---
Q 003890 588 SLLCTL-LNLQTLEMPSSYVD-----QSPEDIWMMQKLMHLNFGSITLPAP----PKNYSSSLKNLIFISTLNPSSC--- 654 (788)
Q Consensus 588 ~~i~~L-~~L~~L~L~~~~l~-----~lp~~l~~L~~L~~L~l~~~~~~~~----i~~~~~~l~~L~~L~~~~~~~~--- 654 (788)
..+..+ ++|+.|++++|.+. .++..+..+++|++|++++|.+... ++..+..+++|+.|++.++...
T Consensus 130 ~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~ 209 (319)
T cd00116 130 KGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEG 209 (319)
T ss_pred HHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHH
Confidence 344555 67777777777554 2333455666777777776654421 1111133446666666644321
Q ss_pred ---CccccCCCCCCCeEEEEccCCcChh----cHHHhc-cCCCCCCEEEeecCCCCCc--ccccccCCCccccccc---c
Q 003890 655 ---TPDILGRLPNVQTLRISGDLSCYHS----GVSKSL-CELHKLECLKLVNERKPSR--MVLYEYQFPPTDMARI---L 721 (788)
Q Consensus 655 ---~~~~l~~L~~L~~L~l~~~~~~~~~----~~~~~l-~~l~~L~~L~L~~~~~~~~--~~~~~~l~~~~~L~~L---~ 721 (788)
....+..+++|+.|++++|. ... .+...+ ...+.|++|+++++..... ......+..+++|+.| .
T Consensus 210 ~~~l~~~~~~~~~L~~L~ls~n~--l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~ 287 (319)
T cd00116 210 ASALAETLASLKSLEVLNLGDNN--LTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRG 287 (319)
T ss_pred HHHHHHHhcccCCCCEEecCCCc--CchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCC
Confidence 12235567778888888775 221 111111 1236788888876543210 0112333445667777 4
Q ss_pred ccccc---cccCcccCCC-CCcceEEEeccc
Q 003890 722 SQLIR---QEFVESEMSL-PLLQLLDLEESD 748 (788)
Q Consensus 722 ~~l~~---~~lp~~l~~l-~~L~~L~L~~~~ 748 (788)
|.+.. ..+...+... +.|+.|++.+|+
T Consensus 288 N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (319)
T cd00116 288 NKFGEEGAQLLAESLLEPGNELESLWVKDDS 318 (319)
T ss_pred CCCcHHHHHHHHHHHhhcCCchhhcccCCCC
Confidence 44411 1122222334 788888887775
No 23
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.13 E-value=8.1e-12 Score=127.70 Aligned_cols=243 Identities=14% Similarity=0.060 Sum_probs=146.8
Q ss_pred cccceEEecCCCCchhhhhhhhhhhcCCccccEEEecCCCCCCC-CccccCCCCccEEEecC-CCCcccChh-hcCCCCC
Q 003890 520 IYLQSFLNHSSESDHLALIDCENFCEKFKHLRILNLGSAVLVQF-PPGLENLFHLKYLKLNI-PSLKCLPSL-LCTLLNL 596 (788)
Q Consensus 520 ~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l-p~~i~~L~~L~~L~L~~-~~i~~lp~~-i~~L~~L 596 (788)
+....+.+..+.+ ..+++.+|+.+++||.|||++|.|+.+ |..|.+|..|-.|-+.+ |+|+.+|.. |++|..|
T Consensus 67 ~~tveirLdqN~I----~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~sl 142 (498)
T KOG4237|consen 67 PETVEIRLDQNQI----SSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSL 142 (498)
T ss_pred CcceEEEeccCCc----ccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHH
Confidence 3445556665554 335567888888888888888887744 56777777777776666 678888764 5778888
Q ss_pred cEEEccCCCCcccch-hhhcccccceeeccCccCCCCCcCCcCcccccccccccccc---cc-----------CccccCC
Q 003890 597 QTLEMPSSYVDQSPE-DIWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFISTLNPS---SC-----------TPDILGR 661 (788)
Q Consensus 597 ~~L~L~~~~l~~lp~-~l~~L~~L~~L~l~~~~~~~~i~~~~~~l~~L~~L~~~~~~---~~-----------~~~~l~~ 661 (788)
+-|.+.-|++.-++. .+..|++|..|.+..|.+..--...|..+.+++++.+..+. .+ .+.+++.
T Consensus 143 qrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsg 222 (498)
T KOG4237|consen 143 QRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSG 222 (498)
T ss_pred HHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhccc
Confidence 888777777666654 57778888888777653321000012555555555443111 00 0001111
Q ss_pred CCCC----------------------C----eEEEEccCCcChhcHHHhccCCCCCCEEEeecCCCCCcccccccCCCcc
Q 003890 662 LPNV----------------------Q----TLRISGDLSCYHSGVSKSLCELHKLECLKLVNERKPSRMVLYEYQFPPT 715 (788)
Q Consensus 662 L~~L----------------------~----~L~l~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~l~~~~ 715 (788)
.... + .+.-.... ........|.++++|+.|+|+++.... +...++....
T Consensus 223 arc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~--d~~cP~~cf~~L~~L~~lnlsnN~i~~--i~~~aFe~~a 298 (498)
T KOG4237|consen 223 ARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFP--DSICPAKCFKKLPNLRKLNLSNNKITR--IEDGAFEGAA 298 (498)
T ss_pred ceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCc--CCcChHHHHhhcccceEeccCCCccch--hhhhhhcchh
Confidence 1111 0 11111101 111122347788889999998654431 3345666777
Q ss_pred ccccc---cccccccccCc-ccCCCCCcceEEEeccccccccccCCcccccccccCCeeEecccC
Q 003890 716 DMARI---LSQLIRQEFVE-SEMSLPLLQLLDLEESDEEDDERSDILEILQDINDFVHESEEAID 776 (788)
Q Consensus 716 ~L~~L---~~~l~~~~lp~-~l~~l~~L~~L~L~~~~l~~~~~~~~l~~l~~L~~L~~L~L~~~~ 776 (788)
.+++| .|.+ ..+.+ -|..+..|+.|+|.+|+++.. ....|..+..|..|+|-++|
T Consensus 299 ~l~eL~L~~N~l--~~v~~~~f~~ls~L~tL~L~~N~it~~----~~~aF~~~~~l~~l~l~~Np 357 (498)
T KOG4237|consen 299 ELQELYLTRNKL--EFVSSGMFQGLSGLKTLSLYDNQITTV----APGAFQTLFSLSTLNLLSNP 357 (498)
T ss_pred hhhhhhcCcchH--HHHHHHhhhccccceeeeecCCeeEEE----ecccccccceeeeeehccCc
Confidence 78877 5666 44432 345788899999999998876 55567788888888887654
No 24
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.01 E-value=1.4e-10 Score=137.33 Aligned_cols=242 Identities=18% Similarity=0.155 Sum_probs=162.6
Q ss_pred ccccceEEecCCCCchhhhhhhhhhhcCCccccEEEecCCC--CCCCCcc-ccCCCCccEEEecCCC-CcccChhhcCCC
Q 003890 519 DIYLQSFLNHSSESDHLALIDCENFCEKFKHLRILNLGSAV--LVQFPPG-LENLFHLKYLKLNIPS-LKCLPSLLCTLL 594 (788)
Q Consensus 519 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~--l~~lp~~-i~~L~~L~~L~L~~~~-i~~lp~~i~~L~ 594 (788)
....|...+.++...... .. ...+.|+.|-+.+|. +..++.. |..+++|++|+|++|. +.++|++|++|-
T Consensus 522 ~~~~rr~s~~~~~~~~~~-----~~-~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li 595 (889)
T KOG4658|consen 522 WNSVRRMSLMNNKIEHIA-----GS-SENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELV 595 (889)
T ss_pred hhheeEEEEeccchhhcc-----CC-CCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhh
Confidence 667788887777652111 11 233479999999986 6666654 6779999999999874 889999999999
Q ss_pred CCcEEEccCCCCcccchhhhcccccceeeccCccCCCCCcCCcCccccccccccccc----cccCccccCCCCCCCeEEE
Q 003890 595 NLQTLEMPSSYVDQSPEDIWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFISTLNP----SSCTPDILGRLPNVQTLRI 670 (788)
Q Consensus 595 ~L~~L~L~~~~l~~lp~~l~~L~~L~~L~l~~~~~~~~i~~~~~~l~~L~~L~~~~~----~~~~~~~l~~L~~L~~L~l 670 (788)
+|++|+++++.+..+|.++++|.+|.+|++..+.....++..+..|.+|++|.+... ....+.++..|.+|+.|.+
T Consensus 596 ~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~ 675 (889)
T KOG4658|consen 596 HLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSI 675 (889)
T ss_pred hhhcccccCCCccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhhee
Confidence 999999999999999999999999999999876433333333467999999998843 2445566777778887777
Q ss_pred EccCCcChhcHHHhccCCCCCCE----EEeecCCCCCcccccccCCCccccccc-cccccccc-cCcccC-----C-CCC
Q 003890 671 SGDLSCYHSGVSKSLCELHKLEC----LKLVNERKPSRMVLYEYQFPPTDMARI-LSQLIRQE-FVESEM-----S-LPL 738 (788)
Q Consensus 671 ~~~~~~~~~~~~~~l~~l~~L~~----L~L~~~~~~~~~~~~~~l~~~~~L~~L-~~~l~~~~-lp~~l~-----~-l~~ 738 (788)
.... . .....+..+..|.+ +.+.++... .....+..+.+|+.| ...+.+.. ...|.. . +++
T Consensus 676 ~~~s---~-~~~e~l~~~~~L~~~~~~l~~~~~~~~---~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~ 748 (889)
T KOG4658|consen 676 TISS---V-LLLEDLLGMTRLRSLLQSLSIEGCSKR---TLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPN 748 (889)
T ss_pred ecch---h-HhHhhhhhhHHHHHHhHhhhhcccccc---eeecccccccCcceEEEEcCCCchhhcccccccchhhhHHH
Confidence 6554 2 22233334444443 332222222 345566667788888 22221111 112322 1 456
Q ss_pred cceEEEeccccccccccCCcccccccccCCeeEecccCch
Q 003890 739 LQLLDLEESDEEDDERSDILEILQDINDFVHESEEAIDTF 778 (788)
Q Consensus 739 L~~L~L~~~~l~~~~~~~~l~~l~~L~~L~~L~L~~~~~l 778 (788)
|..+.+.+|....+ +.+....|+|+.|.+.+|..+
T Consensus 749 l~~~~~~~~~~~r~-----l~~~~f~~~L~~l~l~~~~~~ 783 (889)
T KOG4658|consen 749 LSKVSILNCHMLRD-----LTWLLFAPHLTSLSLVSCRLL 783 (889)
T ss_pred HHHHHhhccccccc-----cchhhccCcccEEEEeccccc
Confidence 77777777765543 444456799999999999754
No 25
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.92 E-value=5.1e-11 Score=121.97 Aligned_cols=247 Identities=15% Similarity=0.117 Sum_probs=179.0
Q ss_pred CCCceeEEEeecCcccccc---ccccccccceEEecCCCCchhhhhhhhhhhcCCccccEEEecC-CCCCCCCc-cccCC
Q 003890 496 PPANVKWCYIMKDLIEFFS---LEHSDIYLQSFLNHSSESDHLALIDCENFCEKFKHLRILNLGS-AVLVQFPP-GLENL 570 (788)
Q Consensus 496 ~~~~~r~Ls~~~~~~~~~~---~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~-~~l~~lp~-~i~~L 570 (788)
.|...--+.+..|.+..++ +.. +++||.|+++.+.+ ..+-|..|.+++.|..|-+.+ |.|+.+|. .|++|
T Consensus 65 LP~~tveirLdqN~I~~iP~~aF~~-l~~LRrLdLS~N~I----s~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL 139 (498)
T KOG4237|consen 65 LPPETVEIRLDQNQISSIPPGAFKT-LHRLRRLDLSKNNI----SFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGL 139 (498)
T ss_pred CCCcceEEEeccCCcccCChhhccc-hhhhceecccccch----hhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhH
Confidence 5677888888888887766 666 99999999999886 234569999999988887766 88999985 48889
Q ss_pred CCccEEEecCCCCcccC-hhhcCCCCCcEEEccCCCCcccch-hhhcccccceeeccCcc------CCCC------CcCC
Q 003890 571 FHLKYLKLNIPSLKCLP-SLLCTLLNLQTLEMPSSYVDQSPE-DIWMMQKLMHLNFGSIT------LPAP------PKNY 636 (788)
Q Consensus 571 ~~L~~L~L~~~~i~~lp-~~i~~L~~L~~L~L~~~~l~~lp~-~l~~L~~L~~L~l~~~~------~~~~------i~~~ 636 (788)
..|+.|.+.-|.+..++ ..+..|++|..|.+..|.+..++. ++..+.+++++.+..+. +|.- .|-.
T Consensus 140 ~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ie 219 (498)
T KOG4237|consen 140 SSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIE 219 (498)
T ss_pred HHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhh
Confidence 99999999999998765 467999999999999999999988 68999999999876332 2110 0000
Q ss_pred cCccccc----------------------cccc--cc-cc---cccCccccCCCCCCCeEEEEccCCcChhcHHHhccCC
Q 003890 637 SSSLKNL----------------------IFIS--TL-NP---SSCTPDILGRLPNVQTLRISGDLSCYHSGVSKSLCEL 688 (788)
Q Consensus 637 ~~~l~~L----------------------~~L~--~~-~~---~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~l~~l 688 (788)
++...-. +.+- +. .+ ..+....|+.|++|++|+++++. ....-..+|.+.
T Consensus 220 tsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~--i~~i~~~aFe~~ 297 (498)
T KOG4237|consen 220 TSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNK--ITRIEDGAFEGA 297 (498)
T ss_pred cccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCc--cchhhhhhhcch
Confidence 1111111 1110 00 00 11112238899999999999998 555667789999
Q ss_pred CCCCEEEeecCCCCCcccccccCCCccccccc---cccccccccCcccCCCCCcceEEEeccccccc
Q 003890 689 HKLECLKLVNERKPSRMVLYEYQFPPTDMARI---LSQLIRQEFVESEMSLPLLQLLDLEESDEEDD 752 (788)
Q Consensus 689 ~~L~~L~L~~~~~~~~~~~~~~l~~~~~L~~L---~~~l~~~~lp~~l~~l~~L~~L~L~~~~l~~~ 752 (788)
.+|+.|.|..+.... ..-..+..+.+|+.| .|++ ..--|..|..+.+|.+|+|-.|++..+
T Consensus 298 a~l~eL~L~~N~l~~--v~~~~f~~ls~L~tL~L~~N~i-t~~~~~aF~~~~~l~~l~l~~Np~~Cn 361 (498)
T KOG4237|consen 298 AELQELYLTRNKLEF--VSSGMFQGLSGLKTLSLYDNQI-TTVAPGAFQTLFSLSTLNLLSNPFNCN 361 (498)
T ss_pred hhhhhhhcCcchHHH--HHHHhhhccccceeeeecCCee-EEEecccccccceeeeeehccCcccCc
Confidence 999999999543321 234456778888888 6667 233476788899999999998887654
No 26
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=98.88 E-value=2.4e-07 Score=102.59 Aligned_cols=288 Identities=17% Similarity=0.138 Sum_probs=155.2
Q ss_pred CCcccchhcHHHHHHHHhcC--CCCcEEEEEEcCCCChHHHHHHHHHcccCcccccceeEEEEeCCCCChHHHHHHHHHH
Q 003890 185 LDISEFERGREELFDLLIEG--PSGLSVVAILNGSGFDKTAFAADTYNNNHIKFYFDCLAWVRVSIAYDSGKILDDIIKS 262 (788)
Q Consensus 185 ~~~vGr~~~~~~i~~~L~~~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~~ 262 (788)
..++||++++++|...|... ......+.|+|++|+|||++++.++++.......-..+++++....+...++..++.+
T Consensus 30 ~~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~~~~~~i~~~ 109 (394)
T PRK00411 30 ENLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRYAIFSEIARQ 109 (394)
T ss_pred CCCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHHHHHHHHHHH
Confidence 67999999999999998543 2234567899999999999999999853222212236667666666778899999999
Q ss_pred cCCCCCCcccccCCHHHHHHHHHHHhc--CCcEEEEEeCCCC-C----hhhHHHHhhhcCCCCCCcE--EEEecCChHHH
Q 003890 263 VMPPSRVSVIIGEDYKLKKTILRDYLT--NKKYFIVLDDVFN-D----SDIWDDLEQVLPDNQNGSR--VLITVTDLDLL 333 (788)
Q Consensus 263 l~~~~~~~~~~~~~~~~~~~~l~~~l~--~kr~LlVLDdvw~-~----~~~~~~l~~~l~~~~~gsk--IivTTR~~~v~ 333 (788)
+..... .....+.++....+.+.++ ++..+||||+++. . .+.+..+...+... .+++ ||.++....+.
T Consensus 110 l~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~~-~~~~v~vI~i~~~~~~~ 186 (394)
T PRK00411 110 LFGHPP--PSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEEY-PGARIGVIGISSDLTFL 186 (394)
T ss_pred hcCCCC--CCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhcc-CCCeEEEEEEECCcchh
Confidence 875321 0123456777777777775 4568999999972 1 22344443333222 2333 56666554433
Q ss_pred hhccc-------cCCCccch--------------------------HHHHHHHHhhccC-ch-hHHHHHHH-----cCCC
Q 003890 334 ESLEM-------ENGEKIRP--------------------------DSVLIGGQMIRLK-HE-SWQFFILH-----YGSM 373 (788)
Q Consensus 334 ~~~~~-------~~~~~~~~--------------------------ai~~ig~~L~~~~-~~-~W~~~l~~-----~~~~ 373 (788)
..... ...++..| |+..++..-.+.. +. ..-.++.. ....
T Consensus 187 ~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~~a~~~~ 266 (394)
T PRK00411 187 YILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLRRAGLIAEREG 266 (394)
T ss_pred hhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcC
Confidence 32211 01122222 3333333221110 00 00011110 0000
Q ss_pred CccCCccCCChHHHHHh------hhccCCCChhhHHHhhhhhc-cC-CCceechhHHHHH--HHHhCCCC-CCHHHHHHH
Q 003890 374 PLENYVQGEAIPTIWRQ------IYAVMELPFHLKVCCIYLCV-FR-PSIEISTRQLYQL--WVAEGFIP-YNSEETAEH 442 (788)
Q Consensus 374 ~~~~~~~~~~i~~~l~~------~~sy~~L~~~lk~cfl~~~~-Fp-~~~~i~~~~Li~~--W~a~g~i~-~~~~~~~~~ 442 (788)
.. .-....+..++.. .-.+..||.+.|..+..++. .. +...+...++... .+++.+-. +........
T Consensus 267 -~~-~I~~~~v~~a~~~~~~~~~~~~~~~L~~~~k~~L~ai~~~~~~~~~~~~~~~i~~~y~~l~~~~~~~~~~~~~~~~ 344 (394)
T PRK00411 267 -SR-KVTEEDVRKAYEKSEIVHLSEVLRTLPLHEKLLLRAIVRLLKKGGDEVTTGEVYEEYKELCEELGYEPRTHTRFYE 344 (394)
T ss_pred -CC-CcCHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHcCCCcCcHHHHHH
Confidence 00 0011122222220 04567899987776555442 22 1234566666543 34432211 122344567
Q ss_pred HHHHHHhCCccccee--cCCCCceEEEEeCHHHHHHH
Q 003890 443 YLKELIHRGFIQVSK--RRAGGTIKACYVPSFVYYSL 477 (788)
Q Consensus 443 ~~~~L~~~~ll~~~~--~~~~~~~~~~~mHdlv~d~a 477 (788)
|+++|...+++.... .+..|+.+.++.+.---++.
T Consensus 345 ~l~~L~~~glI~~~~~~~g~~g~~~~~~~~~~~~~~~ 381 (394)
T PRK00411 345 YINKLDMLGIINTRYSGKGGRGRTRLISLSYDPEDVL 381 (394)
T ss_pred HHHHHHhcCCeEEEEecCCCCCCeEEEEecCCHHHHH
Confidence 999999999998653 23346666676654433333
No 27
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.88 E-value=7.3e-11 Score=126.08 Aligned_cols=154 Identities=24% Similarity=0.296 Sum_probs=104.4
Q ss_pred hhhhcCCccccEEEecCCCCCCCCccccCCCCccEEEecCCCCcccChhhcCCCCCcEEEccCCCCcccchhhhcccccc
Q 003890 541 ENFCEKFKHLRILNLGSAVLVQFPPGLENLFHLKYLKLNIPSLKCLPSLLCTLLNLQTLEMPSSYVDQSPEDIWMMQKLM 620 (788)
Q Consensus 541 ~~~~~~l~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~lp~~l~~L~~L~ 620 (788)
|..+..+..|..|.|..|.+..+|..+++|..|.||+|+.|+++.+|..++.|. |+.|-+++|+++.+|..++.+++|.
T Consensus 91 p~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sNNkl~~lp~~ig~~~tl~ 169 (722)
T KOG0532|consen 91 PEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSNNKLTSLPEEIGLLPTLA 169 (722)
T ss_pred chHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEecCccccCCcccccchhHH
Confidence 355566667777777777777778888888888888888888888877777764 7788888887788887777777788
Q ss_pred eeeccCccCCCCCcCCcCccccccccccccc-cccCccccCCCCCCCeEEEEccCCcChhcHHHhccCCCCCCEEEeecC
Q 003890 621 HLNFGSITLPAPPKNYSSSLKNLIFISTLNP-SSCTPDILGRLPNVQTLRISGDLSCYHSGVSKSLCELHKLECLKLVNE 699 (788)
Q Consensus 621 ~L~l~~~~~~~~i~~~~~~l~~L~~L~~~~~-~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~L~~~ 699 (788)
+|+.+.|.+. .+|+.++.+.+|+.|.+..+ -...++++..|+ |..|++++|. ...+|..|.+|++|++|.|.++
T Consensus 170 ~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~~lp~El~~Lp-Li~lDfScNk---is~iPv~fr~m~~Lq~l~LenN 244 (722)
T KOG0532|consen 170 HLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLEDLPEELCSLP-LIRLDFSCNK---ISYLPVDFRKMRHLQVLQLENN 244 (722)
T ss_pred Hhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhhhCCHHHhCCc-eeeeecccCc---eeecchhhhhhhhheeeeeccC
Confidence 8877776443 12222366667666665532 334555566554 6666666664 5556666666666666666654
Q ss_pred C
Q 003890 700 R 700 (788)
Q Consensus 700 ~ 700 (788)
.
T Consensus 245 P 245 (722)
T KOG0532|consen 245 P 245 (722)
T ss_pred C
Confidence 3
No 28
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.86 E-value=1.4e-10 Score=123.91 Aligned_cols=166 Identities=22% Similarity=0.266 Sum_probs=133.0
Q ss_pred ccccceEEecCCCCchhhhhhhhhhhcCCccccEEEecCCCCCCCCccccCCCCccEEEecCCCCcccChhhcCCCCCcE
Q 003890 519 DIYLQSFLNHSSESDHLALIDCENFCEKFKHLRILNLGSAVLVQFPPGLENLFHLKYLKLNIPSLKCLPSLLCTLLNLQT 598 (788)
Q Consensus 519 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~lp~~i~~L~~L~~ 598 (788)
|-.|.++.+..+... .+|..+.++..|.+|||+.|.++.+|..++.|. |+.|-+++|++..+|+.++.+..|..
T Consensus 97 f~~Le~liLy~n~~r-----~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sNNkl~~lp~~ig~~~tl~~ 170 (722)
T KOG0532|consen 97 FVSLESLILYHNCIR-----TIPEAICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSNNKLTSLPEEIGLLPTLAH 170 (722)
T ss_pred HHHHHHHHHHhccce-----ecchhhhhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEecCccccCCcccccchhHHH
Confidence 566777777777652 345788899999999999999999999998875 89999999999999999999999999
Q ss_pred EEccCCCCcccchhhhcccccceeeccCcc---CCCCCcCCcCccccccccccccccc-cCccccCCCCCCCeEEEEccC
Q 003890 599 LEMPSSYVDQSPEDIWMMQKLMHLNFGSIT---LPAPPKNYSSSLKNLIFISTLNPSS-CTPDILGRLPNVQTLRISGDL 674 (788)
Q Consensus 599 L~L~~~~l~~lp~~l~~L~~L~~L~l~~~~---~~~~i~~~~~~l~~L~~L~~~~~~~-~~~~~l~~L~~L~~L~l~~~~ 674 (788)
||.+.|.+..+|..++.+.+|+.|++..|. +|..+ ..| .|..|+++++.. ..+-.|.+|+.|+.|-|.+|.
T Consensus 171 ld~s~nei~slpsql~~l~slr~l~vrRn~l~~lp~El----~~L-pLi~lDfScNkis~iPv~fr~m~~Lq~l~LenNP 245 (722)
T KOG0532|consen 171 LDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLEDLPEEL----CSL-PLIRLDFSCNKISYLPVDFRKMRHLQVLQLENNP 245 (722)
T ss_pred hhhhhhhhhhchHHhhhHHHHHHHHHhhhhhhhCCHHH----hCC-ceeeeecccCceeecchhhhhhhhheeeeeccCC
Confidence 999999999999999999999999998774 45444 533 477788886654 455679999999999999986
Q ss_pred CcChhcHHHhccCCC---CCCEEEeec
Q 003890 675 SCYHSGVSKSLCELH---KLECLKLVN 698 (788)
Q Consensus 675 ~~~~~~~~~~l~~l~---~L~~L~L~~ 698 (788)
....|+.++.+- =.++|+...
T Consensus 246 ---LqSPPAqIC~kGkVHIFKyL~~qA 269 (722)
T KOG0532|consen 246 ---LQSPPAQICEKGKVHIFKYLSTQA 269 (722)
T ss_pred ---CCCChHHHHhccceeeeeeecchh
Confidence 666666664432 235555553
No 29
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.81 E-value=3.7e-09 Score=100.83 Aligned_cols=131 Identities=22% Similarity=0.274 Sum_probs=44.8
Q ss_pred hcCCccccEEEecCCCCCCCCcccc-CCCCccEEEecCCCCcccChhhcCCCCCcEEEccCCCCcccchhh-hcccccce
Q 003890 544 CEKFKHLRILNLGSAVLVQFPPGLE-NLFHLKYLKLNIPSLKCLPSLLCTLLNLQTLEMPSSYVDQSPEDI-WMMQKLMH 621 (788)
Q Consensus 544 ~~~l~~L~~L~L~~~~l~~lp~~i~-~L~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~lp~~l-~~L~~L~~ 621 (788)
+.+...++.|+|.+|.|+.+. .++ .+.+|+.|++++|.|..++ .+..|.+|++|++++|.+..+++++ ..+++|++
T Consensus 15 ~~n~~~~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~ 92 (175)
T PF14580_consen 15 YNNPVKLRELNLRGNQISTIE-NLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQE 92 (175)
T ss_dssp ----------------------S--TT-TT--EEE-TTS--S--T-T----TT--EEE--SS---S-CHHHHHH-TT--E
T ss_pred ccccccccccccccccccccc-chhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCCCCCccccchHHhCCcCCE
Confidence 344556888999999888763 565 5788899999999988885 6778889999999999888887655 46889999
Q ss_pred eeccCccCCCCCcCCcCccccccccccccccccCccccCCCCCCCeEEEEccCCc-ChhcHHHhccCCCCCCEEEee
Q 003890 622 LNFGSITLPAPPKNYSSSLKNLIFISTLNPSSCTPDILGRLPNVQTLRISGDLSC-YHSGVSKSLCELHKLECLKLV 697 (788)
Q Consensus 622 L~l~~~~~~~~i~~~~~~l~~L~~L~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~-~~~~~~~~l~~l~~L~~L~L~ 697 (788)
|++++|++.. + +.+ ..+..+++|+.|++.+|+-. ...--...+..+|+|+.|+-.
T Consensus 93 L~L~~N~I~~-l----~~l----------------~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 93 LYLSNNKISD-L----NEL----------------EPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQ 148 (175)
T ss_dssp EE-TTS---S-C----CCC----------------GGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTE
T ss_pred EECcCCcCCC-h----HHh----------------HHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCE
Confidence 9988877653 2 211 22344566777777766511 111112234556666666654
No 30
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.76 E-value=6.4e-09 Score=115.23 Aligned_cols=153 Identities=24% Similarity=0.265 Sum_probs=110.7
Q ss_pred hhhcCCccccEEEecCCCCCCCCccccCCC-CccEEEecCCCCcccChhhcCCCCCcEEEccCCCCcccchhhhcccccc
Q 003890 542 NFCEKFKHLRILNLGSAVLVQFPPGLENLF-HLKYLKLNIPSLKCLPSLLCTLLNLQTLEMPSSYVDQSPEDIWMMQKLM 620 (788)
Q Consensus 542 ~~~~~l~~L~~L~L~~~~l~~lp~~i~~L~-~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~lp~~l~~L~~L~ 620 (788)
.....++.+..|++.+|.+..+|...+.+. +|++|++++|.+..+|..++.+++|+.|++++|.+..+|...+.+++|+
T Consensus 110 ~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~ 189 (394)
T COG4886 110 SELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLN 189 (394)
T ss_pred hhhhcccceeEEecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCchhhhhhhhhhhhhhhh
Confidence 344555788999999999998888888885 8999999999999888888899999999999999888888666888999
Q ss_pred eeeccCccCCCCCcCCcCccccccccccccc-cccCccccCCCCCCCeEEEEccCCcChhcHHHhccCCCCCCEEEeec
Q 003890 621 HLNFGSITLPAPPKNYSSSLKNLIFISTLNP-SSCTPDILGRLPNVQTLRISGDLSCYHSGVSKSLCELHKLECLKLVN 698 (788)
Q Consensus 621 ~L~l~~~~~~~~i~~~~~~l~~L~~L~~~~~-~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~L~~ 698 (788)
.|+++++.+.. +|...+.+..|++|.+.++ ....+..+.++.++..|.+.++. ...++..+..+.+|+.|++++
T Consensus 190 ~L~ls~N~i~~-l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~---~~~~~~~~~~l~~l~~L~~s~ 264 (394)
T COG4886 190 NLDLSGNKISD-LPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNK---LEDLPESIGNLSNLETLDLSN 264 (394)
T ss_pred heeccCCcccc-CchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCce---eeeccchhccccccceecccc
Confidence 99998886553 2221145555777777665 34455556666666666655543 333345566666666666664
No 31
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.75 E-value=1.9e-09 Score=106.51 Aligned_cols=152 Identities=18% Similarity=0.182 Sum_probs=79.1
Q ss_pred ccccceEEecCCCC----chhhhhhhhhhhcCCccccEEEecCCCCCCCCccccCCCCccEEEecCCCCcccC----h--
Q 003890 519 DIYLQSFLNHSSES----DHLALIDCENFCEKFKHLRILNLGSAVLVQFPPGLENLFHLKYLKLNIPSLKCLP----S-- 588 (788)
Q Consensus 519 ~~~Lr~L~l~~~~~----~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~lp----~-- 588 (788)
+..|..|.+.+... ++-....+|..+.-+++|..+.++.|.-..+-.-...-+.|.++.+.++.++..| .
T Consensus 181 ~~~l~~l~vs~~~~p~~~sni~~~~l~f~l~~f~~l~~~~~s~~~~~~i~~~~~~kptl~t~~v~~s~~~~~~~l~pe~~ 260 (490)
T KOG1259|consen 181 CTQLVALVVTPVKDPIDRSNIIPNRLSFNLNAFRNLKTLKFSALSTENIVDIELLKPTLQTICVHNTTIQDVPSLLPETI 260 (490)
T ss_pred hhheeEEEecCCCCCCccccccccccccchHHhhhhheeeeeccchhheeceeecCchhheeeeecccccccccccchhh
Confidence 55666666665443 1112223345556677777777777764433222223356777777776554332 1
Q ss_pred ------------------hhcCCCCCcEEEccCCCCcccchhhhcccccceeeccCccCCCCCcCCcCcccccccccccc
Q 003890 589 ------------------LLCTLLNLQTLEMPSSYVDQSPEDIWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFISTLN 650 (788)
Q Consensus 589 ------------------~i~~L~~L~~L~L~~~~l~~lp~~l~~L~~L~~L~l~~~~~~~~i~~~~~~l~~L~~L~~~~ 650 (788)
.+...+.|++|||++|.++.+.+++.-+|+++.|+++.|.+
T Consensus 261 ~~D~~~~E~~t~~G~~~~~~dTWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i--------------------- 319 (490)
T KOG1259|consen 261 LADPSGSEPSTSNGSALVSADTWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRI--------------------- 319 (490)
T ss_pred hcCccCCCCCccCCceEEecchHhhhhhccccccchhhhhhhhhhccceeEEeccccce---------------------
Confidence 11123345555565555555555555555555555554433
Q ss_pred ccccCccccCCCCCCCeEEEEccCCcChhcHHHhccCCCCCCEEEee
Q 003890 651 PSSCTPDILGRLPNVQTLRISGDLSCYHSGVSKSLCELHKLECLKLV 697 (788)
Q Consensus 651 ~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~L~ 697 (788)
..+..+..|++|..|++++|. ......+-.++-+.+.|.|+
T Consensus 320 ---~~v~nLa~L~~L~~LDLS~N~---Ls~~~Gwh~KLGNIKtL~La 360 (490)
T KOG1259|consen 320 ---RTVQNLAELPQLQLLDLSGNL---LAECVGWHLKLGNIKTLKLA 360 (490)
T ss_pred ---eeehhhhhcccceEeecccch---hHhhhhhHhhhcCEeeeehh
Confidence 333345555666666666654 33333333344455566665
No 32
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=98.71 E-value=2.1e-06 Score=94.11 Aligned_cols=112 Identities=21% Similarity=0.094 Sum_probs=80.9
Q ss_pred CCcccchhcHHHHHHHHhcC--CCCcEEEEEEcCCCChHHHHHHHHHcccCccccc------ceeEEEEeCCCCChHHHH
Q 003890 185 LDISEFERGREELFDLLIEG--PSGLSVVAILNGSGFDKTAFAADTYNNNHIKFYF------DCLAWVRVSIAYDSGKIL 256 (788)
Q Consensus 185 ~~~vGr~~~~~~i~~~L~~~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F------~~~~wv~vs~~~~~~~~~ 256 (788)
..++||+.++++|..+|... ......+.|+|++|+|||++++.+++. ..... -..+|+++....+...++
T Consensus 15 ~~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~--l~~~~~~~~~~~~~v~in~~~~~~~~~~~ 92 (365)
T TIGR02928 15 DRIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKE--LEEAAEDRDVRVVTVYVNCQILDTLYQVL 92 (365)
T ss_pred CCCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHH--HHHHhhccCCceEEEEEECCCCCCHHHHH
Confidence 67999999999999998642 223567899999999999999999984 22111 136777777766778899
Q ss_pred HHHHHHcCC---CCCCcccccCCHHHHHHHHHHHhc--CCcEEEEEeCCC
Q 003890 257 DDIIKSVMP---PSRVSVIIGEDYKLKKTILRDYLT--NKKYFIVLDDVF 301 (788)
Q Consensus 257 ~~il~~l~~---~~~~~~~~~~~~~~~~~~l~~~l~--~kr~LlVLDdvw 301 (788)
..|+.++.. ... ....+..+....+.+.+. +++++||||+++
T Consensus 93 ~~i~~~l~~~~~~~~---~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d 139 (365)
T TIGR02928 93 VELANQLRGSGEEVP---TTGLSTSEVFRRLYKELNERGDSLIIVLDEID 139 (365)
T ss_pred HHHHHHHhhcCCCCC---CCCCCHHHHHHHHHHHHHhcCCeEEEEECchh
Confidence 999998842 211 123345556666666663 568899999997
No 33
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.71 E-value=1e-06 Score=108.83 Aligned_cols=269 Identities=12% Similarity=0.096 Sum_probs=141.6
Q ss_pred CCcccchhcHHHHHHHHhcCCCCcEEEEEEcCCCChHHHHHHHHHcccCcccccceeEEEEeCC-CCChHHHHHHHHHHc
Q 003890 185 LDISEFERGREELFDLLIEGPSGLSVVAILNGSGFDKTAFAADTYNNNHIKFYFDCLAWVRVSI-AYDSGKILDDIIKSV 263 (788)
Q Consensus 185 ~~~vGr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~-~~~~~~~~~~il~~l 263 (788)
..+|-|.. +.+.|... ...+++.|+|++|.||||++...... ++.++|+++.. +.+...+...++..+
T Consensus 14 ~~~~~R~r----l~~~l~~~-~~~~~~~v~apaG~GKTtl~~~~~~~------~~~~~w~~l~~~d~~~~~f~~~l~~~l 82 (903)
T PRK04841 14 HNTVVRER----LLAKLSGA-NNYRLVLVTSPAGYGKTTLISQWAAG------KNNLGWYSLDESDNQPERFASYLIAAL 82 (903)
T ss_pred cccCcchH----HHHHHhcc-cCCCeEEEECCCCCCHHHHHHHHHHh------CCCeEEEecCcccCCHHHHHHHHHHHH
Confidence 34566654 44444332 35789999999999999999998752 23699999964 446666767777776
Q ss_pred CCCCCCc---------ccccCCHHHHHHHHHHHhc--CCcEEEEEeCCCC-Chhh-HHHHhhhcCCCCCCcEEEEecCCh
Q 003890 264 MPPSRVS---------VIIGEDYKLKKTILRDYLT--NKKYFIVLDDVFN-DSDI-WDDLEQVLPDNQNGSRVLITVTDL 330 (788)
Q Consensus 264 ~~~~~~~---------~~~~~~~~~~~~~l~~~l~--~kr~LlVLDdvw~-~~~~-~~~l~~~l~~~~~gskIivTTR~~ 330 (788)
....... .....+.......+-..+. +.+++||+||+.. +... .+.+...++....+.++|||||..
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~sR~~ 162 (903)
T PRK04841 83 QQATNGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVLSRNL 162 (903)
T ss_pred HHhcCcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEEeCCC
Confidence 4221100 0011223333333333332 6899999999952 2222 233333344445567898999984
Q ss_pred HH---HhhccccCCCccc----h-----HHHHHHHHhhccCch-----------hHHHHHH----HcCCCC--cc----C
Q 003890 331 DL---LESLEMENGEKIR----P-----DSVLIGGQMIRLKHE-----------SWQFFIL----HYGSMP--LE----N 377 (788)
Q Consensus 331 ~v---~~~~~~~~~~~~~----~-----ai~~ig~~L~~~~~~-----------~W~~~l~----~~~~~~--~~----~ 377 (788)
.- ...-.......+. + +...++..+...... -|-..+. .+...+ .. .
T Consensus 163 ~~~~~~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~~~~~~~~~~~~~~l~~~t~Gwp~~l~l~~~~~~~~~~~~~~~~~~ 242 (903)
T PRK04841 163 PPLGIANLRVRDQLLEIGSQQLAFDHQEAQQFFDQRLSSPIEAAESSRLCDDVEGWATALQLIALSARQNNSSLHDSARR 242 (903)
T ss_pred CCCchHhHHhcCcceecCHHhCCCCHHHHHHHHHhccCCCCCHHHHHHHHHHhCChHHHHHHHHHHHhhCCCchhhhhHh
Confidence 21 1100000011111 1 111111111100000 1111111 110000 00 0
Q ss_pred -Cc-cCCChHHHHHhhhc-cCCCChhhHHHhhhhhccCCCceechhHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCccc
Q 003890 378 -YV-QGEAIPTIWRQIYA-VMELPFHLKVCCIYLCVFRPSIEISTRQLYQLWVAEGFIPYNSEETAEHYLKELIHRGFIQ 454 (788)
Q Consensus 378 -~~-~~~~i~~~l~~~~s-y~~L~~~lk~cfl~~~~Fp~~~~i~~~~Li~~W~a~g~i~~~~~~~~~~~~~~L~~~~ll~ 454 (788)
.. ....+...+. -. ++.||+..+..+...|++++ ++.+ +.. .+.. .+.+...+.+|.+.+++.
T Consensus 243 ~~~~~~~~~~~~l~--~~v~~~l~~~~~~~l~~~a~~~~---~~~~-l~~-----~l~~---~~~~~~~L~~l~~~~l~~ 308 (903)
T PRK04841 243 LAGINASHLSDYLV--EEVLDNVDLETRHFLLRCSVLRS---MNDA-LIV-----RVTG---EENGQMRLEELERQGLFI 308 (903)
T ss_pred hcCCCchhHHHHHH--HHHHhcCCHHHHHHHHHhccccc---CCHH-HHH-----HHcC---CCcHHHHHHHHHHCCCee
Confidence 00 0123444443 33 78999999999999999873 3322 222 1111 123578899999999975
Q ss_pred ceecCCCCceEEEEeCHHHHHHHHHHh
Q 003890 455 VSKRRAGGTIKACYVPSFVYYSLLSVA 481 (788)
Q Consensus 455 ~~~~~~~~~~~~~~mHdlv~d~a~~~~ 481 (788)
..... .-..|+.|++++++.+...
T Consensus 309 ~~~~~---~~~~yr~H~L~r~~l~~~l 332 (903)
T PRK04841 309 QRMDD---SGEWFRYHPLFASFLRHRC 332 (903)
T ss_pred EeecC---CCCEEehhHHHHHHHHHHH
Confidence 43211 1146888999999998765
No 34
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.63 E-value=8.4e-09 Score=107.46 Aligned_cols=204 Identities=16% Similarity=0.059 Sum_probs=123.4
Q ss_pred ccCCCCccEEEecCCCCcccCh--hhcCCCCCcEEEccCCCC---cccchhhhcccccceeeccCccCCCCCcCC-cCcc
Q 003890 567 LENLFHLKYLKLNIPSLKCLPS--LLCTLLNLQTLEMPSSYV---DQSPEDIWMMQKLMHLNFGSITLPAPPKNY-SSSL 640 (788)
Q Consensus 567 i~~L~~L~~L~L~~~~i~~lp~--~i~~L~~L~~L~L~~~~l---~~lp~~l~~L~~L~~L~l~~~~~~~~i~~~-~~~l 640 (788)
-.++.+|+...|.++.+...+. ....|++++.|||++|-+ ..+-.-...|++|+.|+++.|++.....+. -..+
T Consensus 117 Qsn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l 196 (505)
T KOG3207|consen 117 QSNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLL 196 (505)
T ss_pred hhhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhh
Confidence 3456777777777777766653 566778888888888833 333344567888888888877665433111 0234
Q ss_pred ccccccccccccccC---ccccCCCCCCCeEEEEccCCcChhcHHHhccCCCCCCEEEeecCCCCCcccccccCCCcccc
Q 003890 641 KNLIFISTLNPSSCT---PDILGRLPNVQTLRISGDLSCYHSGVSKSLCELHKLECLKLVNERKPSRMVLYEYQFPPTDM 717 (788)
Q Consensus 641 ~~L~~L~~~~~~~~~---~~~l~~L~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~l~~~~~L 717 (788)
+.|+.|.+..|.... ...+..+|+|+.|.+..|+ ..........-+..|+.|+|++++.... ........++.|
T Consensus 197 ~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~--~~~~~~~~~~i~~~L~~LdLs~N~li~~-~~~~~~~~l~~L 273 (505)
T KOG3207|consen 197 SHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANE--IILIKATSTKILQTLQELDLSNNNLIDF-DQGYKVGTLPGL 273 (505)
T ss_pred hhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhccc--ccceecchhhhhhHHhhccccCCccccc-ccccccccccch
Confidence 566666666543321 1125567888888888885 1222222233456789999997655421 123345557777
Q ss_pred ccc---cccccccccCcc-----cCCCCCcceEEEeccccccccccCCcccccccccCCeeEecccC
Q 003890 718 ARI---LSQLIRQEFVES-----EMSLPLLQLLDLEESDEEDDERSDILEILQDINDFVHESEEAID 776 (788)
Q Consensus 718 ~~L---~~~l~~~~lp~~-----l~~l~~L~~L~L~~~~l~~~~~~~~l~~l~~L~~L~~L~L~~~~ 776 (788)
..| .+.+..-.+|+. ...+++|++|++..|++.+- . .+..+..+++|+.|.+.+++
T Consensus 274 ~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w--~-sl~~l~~l~nlk~l~~~~n~ 337 (505)
T KOG3207|consen 274 NQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDW--R-SLNHLRTLENLKHLRITLNY 337 (505)
T ss_pred hhhhccccCcchhcCCCccchhhhcccccceeeecccCccccc--c-ccchhhccchhhhhhccccc
Confidence 777 444433334543 24589999999999998631 0 23445567788888766543
No 35
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.63 E-value=3.5e-08 Score=109.34 Aligned_cols=142 Identities=23% Similarity=0.256 Sum_probs=95.6
Q ss_pred EEEecCCCCCCCCccccCCCCccEEEecCCCCcccChhhcCCC-CCcEEEccCCCCcccchhhhcccccceeeccCccCC
Q 003890 552 ILNLGSAVLVQFPPGLENLFHLKYLKLNIPSLKCLPSLLCTLL-NLQTLEMPSSYVDQSPEDIWMMQKLMHLNFGSITLP 630 (788)
Q Consensus 552 ~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~lp~~i~~L~-~L~~L~L~~~~l~~lp~~l~~L~~L~~L~l~~~~~~ 630 (788)
.|++..+.+...+..+..+..+..|++.++.+.++|.....+. +|+.|++++|.+..+|..++.+++|+.|+++.|.+.
T Consensus 97 ~l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~ 176 (394)
T COG4886 97 SLDLNLNRLRSNISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLS 176 (394)
T ss_pred eeeccccccccCchhhhcccceeEEecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCchhh
Confidence 5788888876555667777889999999999999988888885 999999999999998877888999999998887554
Q ss_pred CCCcCCcCccccccccccccccccCcccc-CCCCCCCeEEEEccCCcChhcHHHhccCCCCCCEEEee
Q 003890 631 APPKNYSSSLKNLIFISTLNPSSCTPDIL-GRLPNVQTLRISGDLSCYHSGVSKSLCELHKLECLKLV 697 (788)
Q Consensus 631 ~~i~~~~~~l~~L~~L~~~~~~~~~~~~l-~~L~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~L~ 697 (788)
... ...+.+++|+.|++.++....++.. ..+..|+.|.++++. ....+..+.+++++..|.+.
T Consensus 177 ~l~-~~~~~~~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~---~~~~~~~~~~~~~l~~l~l~ 240 (394)
T COG4886 177 DLP-KLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNS---IIELLSSLSNLKNLSGLELS 240 (394)
T ss_pred hhh-hhhhhhhhhhheeccCCccccCchhhhhhhhhhhhhhcCCc---ceecchhhhhcccccccccC
Confidence 321 1113566666666665544444333 344446666666653 23334444455555555544
No 36
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.60 E-value=4.5e-08 Score=93.37 Aligned_cols=124 Identities=21% Similarity=0.262 Sum_probs=49.4
Q ss_pred ccccceEEecCCCCchhhhhhhhhhhc-CCccccEEEecCCCCCCCCccccCCCCccEEEecCCCCcccChhh-cCCCCC
Q 003890 519 DIYLQSFLNHSSESDHLALIDCENFCE-KFKHLRILNLGSAVLVQFPPGLENLFHLKYLKLNIPSLKCLPSLL-CTLLNL 596 (788)
Q Consensus 519 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~-~l~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~lp~~i-~~L~~L 596 (788)
+.+++.|.+.++.+. .+ ..+. .+.+|++|+|++|.|+.++ .+..+.+|++|++++|.|+++++.+ ..+++|
T Consensus 18 ~~~~~~L~L~~n~I~-~I-----e~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L 90 (175)
T PF14580_consen 18 PVKLRELNLRGNQIS-TI-----ENLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNRISSISEGLDKNLPNL 90 (175)
T ss_dssp ------------------------S--TT-TT--EEE-TTS--S--T-T----TT--EEE--SS---S-CHHHHHH-TT-
T ss_pred ccccccccccccccc-cc-----cchhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCCCCCccccchHHhCCcC
Confidence 556788888887762 11 2333 5678889999999988774 5778889999999999988887665 468899
Q ss_pred cEEEccCCCCcccch--hhhcccccceeeccCccCCCCCcCC----cCcccccccccccc
Q 003890 597 QTLEMPSSYVDQSPE--DIWMMQKLMHLNFGSITLPAPPKNY----SSSLKNLIFISTLN 650 (788)
Q Consensus 597 ~~L~L~~~~l~~lp~--~l~~L~~L~~L~l~~~~~~~~i~~~----~~~l~~L~~L~~~~ 650 (788)
++|++++|.+..+-. .+..+++|+.|++.+|.+... +.+ +..+++|+.|+...
T Consensus 91 ~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~-~~YR~~vi~~lP~Lk~LD~~~ 149 (175)
T PF14580_consen 91 QELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEK-KNYRLFVIYKLPSLKVLDGQD 149 (175)
T ss_dssp -EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGS-TTHHHHHHHH-TT-SEETTEE
T ss_pred CEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccch-hhHHHHHHHHcChhheeCCEE
Confidence 999999886655533 477888899999888755432 111 35678888887654
No 37
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.43 E-value=3.9e-07 Score=92.56 Aligned_cols=93 Identities=11% Similarity=-0.038 Sum_probs=63.2
Q ss_pred cEEEEEEcCCCChHHHHHHHHHcccCcccccceeEEEEeCCC--CChHHHHHHHHHHcCCCCCCccc--ccCCHHHHHHH
Q 003890 208 LSVVAILNGSGFDKTAFAADTYNNNHIKFYFDCLAWVRVSIA--YDSGKILDDIIKSVMPPSRVSVI--IGEDYKLKKTI 283 (788)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~--~~~~~~~~~il~~l~~~~~~~~~--~~~~~~~~~~~ 283 (788)
-..++|+|.+|+|||||++.+|++.... +|+.++|+++++. +++.++++.+...+-.......+ ...-.......
T Consensus 16 Gqr~~I~G~~G~GKTTLlr~I~n~l~~~-~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~~~~ 94 (249)
T cd01128 16 GQRGLIVAPPKAGKTTLLQSIANAITKN-HPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMVLEK 94 (249)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhccccc-cCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCCCHHHHHHHHHHHHHH
Confidence 4678999999999999999999965444 8999999998777 78999999984433222110000 00111122233
Q ss_pred HHHH-hcCCcEEEEEeCCC
Q 003890 284 LRDY-LTNKKYFIVLDDVF 301 (788)
Q Consensus 284 l~~~-l~~kr~LlVLDdvw 301 (788)
.... -+|+++++++|++.
T Consensus 95 a~~~~~~G~~vll~iDei~ 113 (249)
T cd01128 95 AKRLVEHGKDVVILLDSIT 113 (249)
T ss_pred HHHHHHCCCCEEEEEECHH
Confidence 3322 25899999999996
No 38
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.42 E-value=3.2e-08 Score=98.02 Aligned_cols=125 Identities=18% Similarity=0.277 Sum_probs=90.3
Q ss_pred cCCccccEEEecCCCCCCCCccccCCCCccEEEecCCCCcccChhhcCCCCCcEEEccCCCCcccchhhhcccccceeec
Q 003890 545 EKFKHLRILNLGSAVLVQFPPGLENLFHLKYLKLNIPSLKCLPSLLCTLLNLQTLEMPSSYVDQSPEDIWMMQKLMHLNF 624 (788)
Q Consensus 545 ~~l~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~lp~~l~~L~~L~~L~l 624 (788)
.....|..|||++|.|+.+..++.-++.++.|+++.|.|..+. ++..|++|+.|||++|.+..+-..-.+|.|.+.|.+
T Consensus 281 dTWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~-nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~L 359 (490)
T KOG1259|consen 281 DTWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQ-NLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKL 359 (490)
T ss_pred chHhhhhhccccccchhhhhhhhhhccceeEEeccccceeeeh-hhhhcccceEeecccchhHhhhhhHhhhcCEeeeeh
Confidence 3445678888888888888777777888888888888877774 377888888888888876666554456777788888
Q ss_pred cCccCC--CCCcCCcCccccccccccccccccC---ccccCCCCCCCeEEEEccC
Q 003890 625 GSITLP--APPKNYSSSLKNLIFISTLNPSSCT---PDILGRLPNVQTLRISGDL 674 (788)
Q Consensus 625 ~~~~~~--~~i~~~~~~l~~L~~L~~~~~~~~~---~~~l~~L~~L~~L~l~~~~ 674 (788)
.+|.+. .++ ++|-+|..|++.++.... ...+++|+.|+.|.+.+|.
T Consensus 360 a~N~iE~LSGL----~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NP 410 (490)
T KOG1259|consen 360 AQNKIETLSGL----RKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNP 410 (490)
T ss_pred hhhhHhhhhhh----HhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCC
Confidence 777543 344 677777777776654433 3447777888877777776
No 39
>PF05729 NACHT: NACHT domain
Probab=98.41 E-value=1.2e-06 Score=84.08 Aligned_cols=115 Identities=19% Similarity=0.221 Sum_probs=67.7
Q ss_pred EEEEEEcCCCChHHHHHHHHHcccCcccc----cceeEEEEeCCCCChH---HHHHHHHHHcCCCCCCcccccCCHHHHH
Q 003890 209 SVVAILNGSGFDKTAFAADTYNNNHIKFY----FDCLAWVRVSIAYDSG---KILDDIIKSVMPPSRVSVIIGEDYKLKK 281 (788)
Q Consensus 209 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~----F~~~~wv~vs~~~~~~---~~~~~il~~l~~~~~~~~~~~~~~~~~~ 281 (788)
+++.|+|.+|+||||+++.++..-..... +...+|+......+.. .+...+..+...... ....
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~-------~~~~-- 71 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIA-------PIEE-- 71 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchh-------hhHH--
Confidence 57899999999999999999875322222 4567777765544322 333333333332211 1111
Q ss_pred HHHHHHh-cCCcEEEEEeCCCC--C-hh-----hHHHHh-hhcCC-CCCCcEEEEecCChHHH
Q 003890 282 TILRDYL-TNKKYFIVLDDVFN--D-SD-----IWDDLE-QVLPD-NQNGSRVLITVTDLDLL 333 (788)
Q Consensus 282 ~~l~~~l-~~kr~LlVLDdvw~--~-~~-----~~~~l~-~~l~~-~~~gskIivTTR~~~v~ 333 (788)
.+...+ +.++++||+|++.+ . .. .+..+. ..++. ..++++|+||+|.....
T Consensus 72 -~~~~~~~~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~ 133 (166)
T PF05729_consen 72 -LLQELLEKNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFP 133 (166)
T ss_pred -HHHHHHHcCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHH
Confidence 222222 57899999999962 1 11 122322 33333 35689999999987663
No 40
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.40 E-value=9.1e-07 Score=81.30 Aligned_cols=114 Identities=14% Similarity=0.236 Sum_probs=78.7
Q ss_pred cEEEEEEcCCCChHHHHHHHHHcccCcccc-----cceeEEEEeCCCCChHHHHHHHHHHcCCCCCCcccccCCHHHHHH
Q 003890 208 LSVVAILNGSGFDKTAFAADTYNNNHIKFY-----FDCLAWVRVSIAYDSGKILDDIIKSVMPPSRVSVIIGEDYKLKKT 282 (788)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-----F~~~~wv~vs~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~ 282 (788)
-+++.|+|.+|+|||++++.+..+ .... -..++|+.+....+...+.+.++..++.... ...+.+++..
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~----~~~~~~~l~~ 77 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQ--LNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLK----SRQTSDELRS 77 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHH--HHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSS----STS-HHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHH--hHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCcccc----ccCCHHHHHH
Confidence 578899999999999999999984 2211 2347899998888999999999999998765 3456777888
Q ss_pred HHHHHhcCCc-EEEEEeCCCC--ChhhHHHHhhhcCCCCCCcEEEEecCC
Q 003890 283 ILRDYLTNKK-YFIVLDDVFN--DSDIWDDLEQVLPDNQNGSRVLITVTD 329 (788)
Q Consensus 283 ~l~~~l~~kr-~LlVLDdvw~--~~~~~~~l~~~l~~~~~gskIivTTR~ 329 (788)
.+.+.+...+ .+||+|++.. +...++.+..... ..+.+||++-+.
T Consensus 78 ~~~~~l~~~~~~~lviDe~~~l~~~~~l~~l~~l~~--~~~~~vvl~G~~ 125 (131)
T PF13401_consen 78 LLIDALDRRRVVLLVIDEADHLFSDEFLEFLRSLLN--ESNIKVVLVGTP 125 (131)
T ss_dssp HHHHHHHHCTEEEEEEETTHHHHTHHHHHHHHHHTC--SCBEEEEEEESS
T ss_pred HHHHHHHhcCCeEEEEeChHhcCCHHHHHHHHHHHh--CCCCeEEEEECh
Confidence 8888886654 5999999961 1123344433333 556777776554
No 41
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.38 E-value=3e-06 Score=79.21 Aligned_cols=123 Identities=16% Similarity=0.068 Sum_probs=72.9
Q ss_pred ccchhcHHHHHHHHhcCCCCcEEEEEEcCCCChHHHHHHHHHcccCcccccceeEEEEeCCCCChHHHHHHHHHHcCCCC
Q 003890 188 SEFERGREELFDLLIEGPSGLSVVAILNGSGFDKTAFAADTYNNNHIKFYFDCLAWVRVSIAYDSGKILDDIIKSVMPPS 267 (788)
Q Consensus 188 vGr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~~l~~~~ 267 (788)
+|++..++.+...+.... .+.+.|+|.+|+||||+|+.+++. ....-..++++..++..........+...
T Consensus 1 ~~~~~~~~~i~~~~~~~~--~~~v~i~G~~G~GKT~l~~~i~~~--~~~~~~~v~~~~~~~~~~~~~~~~~~~~~----- 71 (151)
T cd00009 1 VGQEEAIEALREALELPP--PKNLLLYGPPGTGKTTLARAIANE--LFRPGAPFLYLNASDLLEGLVVAELFGHF----- 71 (151)
T ss_pred CchHHHHHHHHHHHhCCC--CCeEEEECCCCCCHHHHHHHHHHH--hhcCCCCeEEEehhhhhhhhHHHHHhhhh-----
Confidence 478888889988886643 568889999999999999999984 32222336677665543322221111000
Q ss_pred CCcccccCCHHHHHHHHHHHhcCCcEEEEEeCCCCCh--hhHHHHhhhcC---CC---CCCcEEEEecCChH
Q 003890 268 RVSVIIGEDYKLKKTILRDYLTNKKYFIVLDDVFNDS--DIWDDLEQVLP---DN---QNGSRVLITVTDLD 331 (788)
Q Consensus 268 ~~~~~~~~~~~~~~~~l~~~l~~kr~LlVLDdvw~~~--~~~~~l~~~l~---~~---~~gskIivTTR~~~ 331 (788)
............++.++|+||++ .. .....+...+. .. ..+..||+||....
T Consensus 72 -----------~~~~~~~~~~~~~~~~lilDe~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 72 -----------LVRLLFELAEKAKPGVLFIDEID-SLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred -----------hHhHHHHhhccCCCeEEEEeChh-hhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 00111122234577899999997 32 22223333322 21 35788888888654
No 42
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=98.35 E-value=2.4e-05 Score=89.06 Aligned_cols=270 Identities=17% Similarity=0.151 Sum_probs=151.7
Q ss_pred HHHHHHHHhcCCCCcEEEEEEcCCCChHHHHHHHHHcccCcccccceeEEEEeCCC-CChHHHHHHHHHHcCCCCCC---
Q 003890 194 REELFDLLIEGPSGLSVVAILNGSGFDKTAFAADTYNNNHIKFYFDCLAWVRVSIA-YDSGKILDDIIKSVMPPSRV--- 269 (788)
Q Consensus 194 ~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~-~~~~~~~~~il~~l~~~~~~--- 269 (788)
+..+++.|.... ..+.+-|..++|.|||||+-.... +.. .=..+.|.+++.. -++.++..-++..++...+.
T Consensus 24 R~rL~~~L~~~~-~~RL~li~APAGfGKttl~aq~~~--~~~-~~~~v~Wlslde~dndp~rF~~yLi~al~~~~p~~~~ 99 (894)
T COG2909 24 RPRLLDRLRRAN-DYRLILISAPAGFGKTTLLAQWRE--LAA-DGAAVAWLSLDESDNDPARFLSYLIAALQQATPTLGD 99 (894)
T ss_pred cHHHHHHHhcCC-CceEEEEeCCCCCcHHHHHHHHHH--hcC-cccceeEeecCCccCCHHHHHHHHHHHHHHhCccccH
Confidence 456666666553 589999999999999999999875 222 1235999998664 56788888888888643321
Q ss_pred ------cccccCCHHHHHHHHHHHhc--CCcEEEEEeCCCC--ChhhHHHHhhhcCCCCCCcEEEEecCChHHHhhcccc
Q 003890 270 ------SVIIGEDYKLKKTILRDYLT--NKKYFIVLDDVFN--DSDIWDDLEQVLPDNQNGSRVLITVTDLDLLESLEME 339 (788)
Q Consensus 270 ------~~~~~~~~~~~~~~l~~~l~--~kr~LlVLDdvw~--~~~~~~~l~~~l~~~~~gskIivTTR~~~v~~~~~~~ 339 (788)
+.....+...+...+..-+. .++..+||||-.- ++.--..+...+....++-..|||||...-.....-.
T Consensus 100 ~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~SR~rP~l~la~lR 179 (894)
T COG2909 100 EAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHAPENLTLVVTSRSRPQLGLARLR 179 (894)
T ss_pred HHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhCCCCeEEEEEeccCCCCccccee
Confidence 00123344445555555443 3789999999741 3333344444555666788999999975322111100
Q ss_pred C---CCcc-----chHHHHHHHHhhcc---------------CchhHHHHHHHcCCCCcc-------CCccCCChHHHHH
Q 003890 340 N---GEKI-----RPDSVLIGGQMIRL---------------KHESWQFFILHYGSMPLE-------NYVQGEAIPTIWR 389 (788)
Q Consensus 340 ~---~~~~-----~~ai~~ig~~L~~~---------------~~~~W~~~l~~~~~~~~~-------~~~~~~~i~~~l~ 389 (788)
. ...+ ....+-.+.++... ..+-|-..++-..-. .. ..+...+....+.
T Consensus 180 lr~~llEi~~~~Lrf~~eE~~~fl~~~~~l~Ld~~~~~~L~~~teGW~~al~L~aLa-~~~~~~~~q~~~~LsG~~~~l~ 258 (894)
T COG2909 180 LRDELLEIGSEELRFDTEEAAAFLNDRGSLPLDAADLKALYDRTEGWAAALQLIALA-LRNNTSAEQSLRGLSGAASHLS 258 (894)
T ss_pred ehhhHHhcChHhhcCChHHHHHHHHHcCCCCCChHHHHHHHhhcccHHHHHHHHHHH-ccCCCcHHHHhhhccchHHHHH
Confidence 0 0000 00000000011000 011232222111000 00 0011111122222
Q ss_pred hhhc---cCCCChhhHHHhhhhhccCCCceechhHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCcccceecCCCCceEE
Q 003890 390 QIYA---VMELPFHLKVCCIYLCVFRPSIEISTRQLYQLWVAEGFIPYNSEETAEHYLKELIHRGFIQVSKRRAGGTIKA 466 (788)
Q Consensus 390 ~~~s---y~~L~~~lk~cfl~~~~Fp~~~~i~~~~Li~~W~a~g~i~~~~~~~~~~~~~~L~~~~ll~~~~~~~~~~~~~ 466 (788)
+++. ++.||+++|...+-||+++.-. ++|+..- +-++.|..++++|.+++|+-..-.+ .-..
T Consensus 259 dYL~eeVld~Lp~~l~~FLl~~svl~~f~----~eL~~~L--------tg~~ng~amLe~L~~~gLFl~~Ldd---~~~W 323 (894)
T COG2909 259 DYLVEEVLDRLPPELRDFLLQTSVLSRFN----DELCNAL--------TGEENGQAMLEELERRGLFLQRLDD---EGQW 323 (894)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHhHHHhh----HHHHHHH--------hcCCcHHHHHHHHHhCCCceeeecC---CCce
Confidence 2222 3789999999999999987521 2333322 2345688899999999998754322 2267
Q ss_pred EEeCHHHHHHHHHHhhh
Q 003890 467 CYVPSFVYYSLLSVAVN 483 (788)
Q Consensus 467 ~~mHdlv~d~a~~~~~~ 483 (788)
|+.|.+..||.+.--..
T Consensus 324 fryH~LFaeFL~~r~~~ 340 (894)
T COG2909 324 FRYHHLFAEFLRQRLQR 340 (894)
T ss_pred eehhHHHHHHHHhhhcc
Confidence 99999999998765543
No 43
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.35 E-value=6.7e-08 Score=98.30 Aligned_cols=42 Identities=14% Similarity=0.196 Sum_probs=24.9
Q ss_pred CCCcceEEEeccccccccccCCcccccccccCCeeEecccCc
Q 003890 736 LPLLQLLDLEESDEEDDERSDILEILQDINDFVHESEEAIDT 777 (788)
Q Consensus 736 l~~L~~L~L~~~~l~~~~~~~~l~~l~~L~~L~~L~L~~~~~ 777 (788)
.|+|+.|.|.+|.++.+......-.....|.|+.|+|++|.-
T Consensus 269 ~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 269 APSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred CCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 577777777777776541100111234577777777777753
No 44
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.34 E-value=8.1e-07 Score=87.04 Aligned_cols=46 Identities=22% Similarity=0.166 Sum_probs=31.9
Q ss_pred CcccchhcHHHHHHHHhc-CCCCcEEEEEEcCCCChHHHHHHHHHcc
Q 003890 186 DISEFERGREELFDLLIE-GPSGLSVVAILNGSGFDKTAFAADTYNN 231 (788)
Q Consensus 186 ~~vGr~~~~~~i~~~L~~-~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 231 (788)
.||||+++++++.+.|.. .....+.+.|+|.+|+|||+|.+.++..
T Consensus 1 ~fvgR~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~ 47 (185)
T PF13191_consen 1 QFVGREEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDR 47 (185)
T ss_dssp --TT-HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 489999999999999942 2335789999999999999999999984
No 45
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.33 E-value=1.4e-07 Score=98.42 Aligned_cols=175 Identities=18% Similarity=0.098 Sum_probs=105.7
Q ss_pred CCceeEEEeecCcccccc----ccccccccceEEecCCCCchhhhhhhhhhhcCCccccEEEecCCCCCCCCcc--ccCC
Q 003890 497 PANVKWCYIMKDLIEFFS----LEHSDIYLQSFLNHSSESDHLALIDCENFCEKFKHLRILNLGSAVLVQFPPG--LENL 570 (788)
Q Consensus 497 ~~~~r~Ls~~~~~~~~~~----~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~--i~~L 570 (788)
..++|-+++.+....... ... |+++|.|.++.+-..+.. ..-.+...+++|+.|+|+.|.+...-++ -..+
T Consensus 120 ~kkL~~IsLdn~~V~~~~~~~~~k~-~~~v~~LdLS~NL~~nw~--~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l 196 (505)
T KOG3207|consen 120 LKKLREISLDNYRVEDAGIEEYSKI-LPNVRDLDLSRNLFHNWF--PVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLL 196 (505)
T ss_pred HHhhhheeecCccccccchhhhhhh-CCcceeecchhhhHHhHH--HHHHHHHhcccchhcccccccccCCccccchhhh
Confidence 345677777766555433 345 888999988887763221 2236677888999999998887633222 2346
Q ss_pred CCccEEEecCCCCc--ccChhhcCCCCCcEEEccCCC-CcccchhhhcccccceeeccCccCCCCC-cCCcCcccccccc
Q 003890 571 FHLKYLKLNIPSLK--CLPSLLCTLLNLQTLEMPSSY-VDQSPEDIWMMQKLMHLNFGSITLPAPP-KNYSSSLKNLIFI 646 (788)
Q Consensus 571 ~~L~~L~L~~~~i~--~lp~~i~~L~~L~~L~L~~~~-l~~lp~~l~~L~~L~~L~l~~~~~~~~i-~~~~~~l~~L~~L 646 (788)
.||+.|.|+.|.++ .+-..+..+++|+.|+|..|. +..-.....-+..|+.|+|++|.+...- ....+.++.|..|
T Consensus 197 ~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~L 276 (505)
T KOG3207|consen 197 SHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQL 276 (505)
T ss_pred hhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhh
Confidence 78888888888877 333344567888888888883 2222223455677888888877543210 0112566666666
Q ss_pred ccccccccCcc--------ccCCCCCCCeEEEEccC
Q 003890 647 STLNPSSCTPD--------ILGRLPNVQTLRISGDL 674 (788)
Q Consensus 647 ~~~~~~~~~~~--------~l~~L~~L~~L~l~~~~ 674 (788)
.+..+....+. ....+++|+.|.+..|.
T Consensus 277 nls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~ 312 (505)
T KOG3207|consen 277 NLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENN 312 (505)
T ss_pred hccccCcchhcCCCccchhhhcccccceeeecccCc
Confidence 65543222211 13445566666666654
No 46
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.31 E-value=1.4e-05 Score=83.59 Aligned_cols=97 Identities=18% Similarity=0.198 Sum_probs=63.1
Q ss_pred cEEEEEEcCCCChHHHHHHHHHcccCcccccceeEEEEeCCCCChHHHHHHHHHHcCCCCCCcccccCCHHHHHHHHHH-
Q 003890 208 LSVVAILNGSGFDKTAFAADTYNNNHIKFYFDCLAWVRVSIAYDSGKILDDIIKSVMPPSRVSVIIGEDYKLKKTILRD- 286 (788)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~- 286 (788)
..++.|+|++|+|||||++.+++.... ..+ ..+|+ +....+..++++.++..++.... ..+.......+..
T Consensus 43 ~~~~~l~G~~G~GKTtl~~~l~~~l~~-~~~-~~~~~-~~~~~~~~~~l~~i~~~lG~~~~-----~~~~~~~~~~l~~~ 114 (269)
T TIGR03015 43 EGFILITGEVGAGKTTLIRNLLKRLDQ-ERV-VAAKL-VNTRVDAEDLLRMVAADFGLETE-----GRDKAALLRELEDF 114 (269)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHhcCC-CCe-EEeee-eCCCCCHHHHHHHHHHHcCCCCC-----CCCHHHHHHHHHHH
Confidence 568899999999999999999985331 111 12333 33445778889999988876532 2222333333333
Q ss_pred ---H-hcCCcEEEEEeCCCC-ChhhHHHHhh
Q 003890 287 ---Y-LTNKKYFIVLDDVFN-DSDIWDDLEQ 312 (788)
Q Consensus 287 ---~-l~~kr~LlVLDdvw~-~~~~~~~l~~ 312 (788)
. ..+++.++|+||+|. +...++.+..
T Consensus 115 l~~~~~~~~~~vliiDe~~~l~~~~~~~l~~ 145 (269)
T TIGR03015 115 LIEQFAAGKRALLVVDEAQNLTPELLEELRM 145 (269)
T ss_pred HHHHHhCCCCeEEEEECcccCCHHHHHHHHH
Confidence 2 267899999999984 3455666653
No 47
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.29 E-value=7.9e-07 Score=69.49 Aligned_cols=57 Identities=30% Similarity=0.519 Sum_probs=32.6
Q ss_pred cccEEEecCCCCCCCCc-cccCCCCccEEEecCCCCcccCh-hhcCCCCCcEEEccCCC
Q 003890 549 HLRILNLGSAVLVQFPP-GLENLFHLKYLKLNIPSLKCLPS-LLCTLLNLQTLEMPSSY 605 (788)
Q Consensus 549 ~L~~L~L~~~~l~~lp~-~i~~L~~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~ 605 (788)
+|++|++++|.++.+|. .|..+++|++|++++|.+..+|+ .+.++++|++|++++|.
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 45666666666665553 44556666666666666655533 44566666666665553
No 48
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.28 E-value=1.1e-07 Score=105.83 Aligned_cols=224 Identities=20% Similarity=0.121 Sum_probs=137.0
Q ss_pred hhhcCCccccEEEecCCCCCCCCccccCCCCccEEEecCCCCcccChhhcCCCCCcEEEccCCCCcccchhhhcccccce
Q 003890 542 NFCEKFKHLRILNLGSAVLVQFPPGLENLFHLKYLKLNIPSLKCLPSLLCTLLNLQTLEMPSSYVDQSPEDIWMMQKLMH 621 (788)
Q Consensus 542 ~~~~~l~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~lp~~l~~L~~L~~ 621 (788)
..+..+++|..|++.+|.|..+...+..+.+|++|++++|.|..+. .+..+..|+.|++++|.+..++. +..+++|+.
T Consensus 89 ~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~-~l~~l~~L~~L~l~~N~i~~~~~-~~~l~~L~~ 166 (414)
T KOG0531|consen 89 NHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLE-GLSTLTLLKELNLSGNLISDISG-LESLKSLKL 166 (414)
T ss_pred cccccccceeeeeccccchhhcccchhhhhcchheecccccccccc-chhhccchhhheeccCcchhccC-Cccchhhhc
Confidence 4467788888888888888877655778888888888888888874 67777788888888887777765 666888888
Q ss_pred eeccCccCCCCCcCC-cCccccccccccccccccCccccCCCCCCCeEEEEccCCcChhcHHHhccCCC--CCCEEEeec
Q 003890 622 LNFGSITLPAPPKNY-SSSLKNLIFISTLNPSSCTPDILGRLPNVQTLRISGDLSCYHSGVSKSLCELH--KLECLKLVN 698 (788)
Q Consensus 622 L~l~~~~~~~~i~~~-~~~l~~L~~L~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~l~~l~--~L~~L~L~~ 698 (788)
+++++|.+...- .. ...+.+++.+.+.++....+..+..+..+..+++..+. ... ...+..+. +|+.+++++
T Consensus 167 l~l~~n~i~~ie-~~~~~~~~~l~~l~l~~n~i~~i~~~~~~~~l~~~~l~~n~---i~~-~~~l~~~~~~~L~~l~l~~ 241 (414)
T KOG0531|consen 167 LDLSYNRIVDIE-NDELSELISLEELDLGGNSIREIEGLDLLKKLVLLSLLDNK---ISK-LEGLNELVMLHLRELYLSG 241 (414)
T ss_pred ccCCcchhhhhh-hhhhhhccchHHHhccCCchhcccchHHHHHHHHhhccccc---cee-ccCcccchhHHHHHHhccc
Confidence 888877554311 00 15566667666666665555555555555555555443 110 11111122 377777775
Q ss_pred CCCCCcccccccCCCccccccc---cccccccccCcccCCCCCcceEEEeccccccccccCCcccccccccCCeeEeccc
Q 003890 699 ERKPSRMVLYEYQFPPTDMARI---LSQLIRQEFVESEMSLPLLQLLDLEESDEEDDERSDILEILQDINDFVHESEEAI 775 (788)
Q Consensus 699 ~~~~~~~~~~~~l~~~~~L~~L---~~~l~~~~lp~~l~~l~~L~~L~L~~~~l~~~~~~~~l~~l~~L~~L~~L~L~~~ 775 (788)
+... ...+.+..+.++..| .+.+ ..+. .+..++.+..+.+..+++.........+..+..+.+..+.+.+.
T Consensus 242 n~i~---~~~~~~~~~~~l~~l~~~~n~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (414)
T KOG0531|consen 242 NRIS---RSPEGLENLKNLPVLDLSSNRI--SNLE-GLERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTLTLELN 315 (414)
T ss_pred Cccc---cccccccccccccccchhhccc--cccc-cccccchHHHhccCcchhcchhhhhccccccccccccccccccC
Confidence 4433 222555566666666 3333 2222 23345666666677766552200001222566777777777776
Q ss_pred Cch
Q 003890 776 DTF 778 (788)
Q Consensus 776 ~~l 778 (788)
+.-
T Consensus 316 ~~~ 318 (414)
T KOG0531|consen 316 PIR 318 (414)
T ss_pred ccc
Confidence 543
No 49
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=98.27 E-value=1.1e-06 Score=92.82 Aligned_cols=104 Identities=12% Similarity=0.002 Sum_probs=66.4
Q ss_pred HHHHHHhcCCCCcEEEEEEcCCCChHHHHHHHHHcccCcccccceeEEEEeCCCC--ChHHHHHHHHHHcCCCCCCccc-
Q 003890 196 ELFDLLIEGPSGLSVVAILNGSGFDKTAFAADTYNNNHIKFYFDCLAWVRVSIAY--DSGKILDDIIKSVMPPSRVSVI- 272 (788)
Q Consensus 196 ~i~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~--~~~~~~~~il~~l~~~~~~~~~- 272 (788)
++++.+..=. .-...+|+|++|+||||||+.||++.... +|+.++||.+++.. ++.++++.+...+-.......+
T Consensus 158 rvID~l~PIG-kGQR~lIvgppGvGKTTLaK~Ian~I~~n-hFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st~d~~~~ 235 (416)
T PRK09376 158 RIIDLIAPIG-KGQRGLIVAPPKAGKTVLLQNIANSITTN-HPEVHLIVLLIDERPEEVTDMQRSVKGEVVASTFDEPAE 235 (416)
T ss_pred eeeeeecccc-cCceEEEeCCCCCChhHHHHHHHHHHHhh-cCCeEEEEEEeCCchhHHHHHHHHhcCcEEEECCCCCHH
Confidence 4555554322 23467899999999999999999965444 89999999999887 7788888886432222211000
Q ss_pred -ccCCHHHHHHHHHHH-hcCCcEEEEEeCCC
Q 003890 273 -IGEDYKLKKTILRDY-LTNKKYFIVLDDVF 301 (788)
Q Consensus 273 -~~~~~~~~~~~l~~~-l~~kr~LlVLDdvw 301 (788)
.........+.-+.. ..|++++|++|++.
T Consensus 236 ~~~~~a~~~ie~Ae~~~e~G~dVlL~iDsIt 266 (416)
T PRK09376 236 RHVQVAEMVIEKAKRLVEHGKDVVILLDSIT 266 (416)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCEEEEEEChH
Confidence 000011112222222 36899999999995
No 50
>PF13173 AAA_14: AAA domain
Probab=98.27 E-value=1.7e-06 Score=79.06 Aligned_cols=102 Identities=15% Similarity=0.200 Sum_probs=69.5
Q ss_pred cEEEEEEcCCCChHHHHHHHHHcccCcccccceeEEEEeCCCCChHHHHHHHHHHcCCCCCCcccccCCHHHHHHHHHHH
Q 003890 208 LSVVAILNGSGFDKTAFAADTYNNNHIKFYFDCLAWVRVSIAYDSGKILDDIIKSVMPPSRVSVIIGEDYKLKKTILRDY 287 (788)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~~ 287 (788)
-+++.|.|+.|+|||||+++++.+.. .-..+++++........... .+ ..+.+.+.
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~---~~~~~~yi~~~~~~~~~~~~--------------------~~-~~~~~~~~ 57 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLL---PPENILYINFDDPRDRRLAD--------------------PD-LLEYFLEL 57 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhc---ccccceeeccCCHHHHHHhh--------------------hh-hHHHHHHh
Confidence 46899999999999999999997432 23447777655442211000 00 22333344
Q ss_pred hcCCcEEEEEeCCCCChhhHHHHhhhcCCCCCCcEEEEecCChHHHh
Q 003890 288 LTNKKYFIVLDDVFNDSDIWDDLEQVLPDNQNGSRVLITVTDLDLLE 334 (788)
Q Consensus 288 l~~kr~LlVLDdvw~~~~~~~~l~~~l~~~~~gskIivTTR~~~v~~ 334 (788)
...++.+++||+|. ...+|......+-+..+..+|++|+.+.....
T Consensus 58 ~~~~~~~i~iDEiq-~~~~~~~~lk~l~d~~~~~~ii~tgS~~~~l~ 103 (128)
T PF13173_consen 58 IKPGKKYIFIDEIQ-YLPDWEDALKFLVDNGPNIKIILTGSSSSLLS 103 (128)
T ss_pred hccCCcEEEEehhh-hhccHHHHHHHHHHhccCceEEEEccchHHHh
Confidence 44478899999998 77778887777776656789999999876663
No 51
>PLN03150 hypothetical protein; Provisional
Probab=98.25 E-value=1.5e-06 Score=101.19 Aligned_cols=91 Identities=21% Similarity=0.301 Sum_probs=71.4
Q ss_pred cccEEEecCCCCC-CCCccccCCCCccEEEecCCCCc-ccChhhcCCCCCcEEEccCCCCc-ccchhhhcccccceeecc
Q 003890 549 HLRILNLGSAVLV-QFPPGLENLFHLKYLKLNIPSLK-CLPSLLCTLLNLQTLEMPSSYVD-QSPEDIWMMQKLMHLNFG 625 (788)
Q Consensus 549 ~L~~L~L~~~~l~-~lp~~i~~L~~L~~L~L~~~~i~-~lp~~i~~L~~L~~L~L~~~~l~-~lp~~l~~L~~L~~L~l~ 625 (788)
.++.|+|++|.+. .+|..++.+.+|++|+|++|.+. .+|..++++.+|+.|+|++|.+. .+|..+++|++|++|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 3677888888877 77888888888888888888876 77888888888888888888665 577788888888888888
Q ss_pred CccCCCCCcCCcCc
Q 003890 626 SITLPAPPKNYSSS 639 (788)
Q Consensus 626 ~~~~~~~i~~~~~~ 639 (788)
+|.+...+|..++.
T Consensus 499 ~N~l~g~iP~~l~~ 512 (623)
T PLN03150 499 GNSLSGRVPAALGG 512 (623)
T ss_pred CCcccccCChHHhh
Confidence 88766555544443
No 52
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.24 E-value=9.1e-07 Score=69.14 Aligned_cols=59 Identities=24% Similarity=0.341 Sum_probs=53.1
Q ss_pred CCccEEEecCCCCcccCh-hhcCCCCCcEEEccCCCCcccch-hhhcccccceeeccCccC
Q 003890 571 FHLKYLKLNIPSLKCLPS-LLCTLLNLQTLEMPSSYVDQSPE-DIWMMQKLMHLNFGSITL 629 (788)
Q Consensus 571 ~~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~l~~lp~-~l~~L~~L~~L~l~~~~~ 629 (788)
++|++|++++|.+..+|. .+.++++|++|++++|.+..+|. .|..+++|++|++++|.+
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 479999999999999985 67899999999999999999976 689999999999998763
No 53
>PTZ00202 tuzin; Provisional
Probab=98.23 E-value=5.2e-05 Score=80.77 Aligned_cols=101 Identities=13% Similarity=0.110 Sum_probs=70.2
Q ss_pred CCcccchhcHHHHHHHHhcCC-CCcEEEEEEcCCCChHHHHHHHHHcccCcccccceeEEEEeCCCCChHHHHHHHHHHc
Q 003890 185 LDISEFERGREELFDLLIEGP-SGLSVVAILNGSGFDKTAFAADTYNNNHIKFYFDCLAWVRVSIAYDSGKILDDIIKSV 263 (788)
Q Consensus 185 ~~~vGr~~~~~~i~~~L~~~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~~l 263 (788)
..|+||+.+...+...|...+ ...+++.|.|++|+|||||++.+... .. +. ..+++.. +..++++.++.++
T Consensus 262 ~~FVGReaEla~Lr~VL~~~d~~~privvLtG~~G~GKTTLlR~~~~~--l~--~~-qL~vNpr---g~eElLr~LL~AL 333 (550)
T PTZ00202 262 RQFVSREAEESWVRQVLRRLDTAHPRIVVFTGFRGCGKSSLCRSAVRK--EG--MP-AVFVDVR---GTEDTLRSVVKAL 333 (550)
T ss_pred cCCCCcHHHHHHHHHHHhccCCCCceEEEEECCCCCCHHHHHHHHHhc--CC--ce-EEEECCC---CHHHHHHHHHHHc
Confidence 779999999999999997543 23569999999999999999999973 22 22 2333222 6799999999999
Q ss_pred CCCCCCcccccCCHHHHHHHHHHHh-----c-CCcEEEEEeC
Q 003890 264 MPPSRVSVIIGEDYKLKKTILRDYL-----T-NKKYFIVLDD 299 (788)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~l~~~l-----~-~kr~LlVLDd 299 (788)
+.... ....++...|++.+ . |++.+||+-=
T Consensus 334 GV~p~------~~k~dLLrqIqeaLl~~~~e~GrtPVLII~l 369 (550)
T PTZ00202 334 GVPNV------EACGDLLDFISEACRRAKKMNGETPLLVLKL 369 (550)
T ss_pred CCCCc------ccHHHHHHHHHHHHHHHHHhCCCCEEEEEEe
Confidence 97432 22234444444433 2 6677777653
No 54
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.21 E-value=1.7e-07 Score=104.10 Aligned_cols=218 Identities=21% Similarity=0.202 Sum_probs=148.8
Q ss_pred ccccceEEecCCCCchhhhhhhhhhhcCCccccEEEecCCCCCCCCccccCCCCccEEEecCCCCcccChhhcCCCCCcE
Q 003890 519 DIYLQSFLNHSSESDHLALIDCENFCEKFKHLRILNLGSAVLVQFPPGLENLFHLKYLKLNIPSLKCLPSLLCTLLNLQT 598 (788)
Q Consensus 519 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~lp~~i~~L~~L~~ 598 (788)
+.+|..|.+.++... .+ ...+..+++|++|++++|.|+.+ ..+..+..|+.|++.+|.|..++ .+..+.+|+.
T Consensus 94 ~~~l~~l~l~~n~i~-~i----~~~l~~~~~L~~L~ls~N~I~~i-~~l~~l~~L~~L~l~~N~i~~~~-~~~~l~~L~~ 166 (414)
T KOG0531|consen 94 LKSLEALDLYDNKIE-KI----ENLLSSLVNLQVLDLSFNKITKL-EGLSTLTLLKELNLSGNLISDIS-GLESLKSLKL 166 (414)
T ss_pred ccceeeeeccccchh-hc----ccchhhhhcchheeccccccccc-cchhhccchhhheeccCcchhcc-CCccchhhhc
Confidence 788999999988862 22 13378899999999999999877 46778888999999999999885 5667999999
Q ss_pred EEccCCCCcccchh-hhcccccceeeccCccCCCCCcCCcCccccccccccccccccCccccCCCCC--CCeEEEEccCC
Q 003890 599 LEMPSSYVDQSPED-IWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFISTLNPSSCTPDILGRLPN--VQTLRISGDLS 675 (788)
Q Consensus 599 L~L~~~~l~~lp~~-l~~L~~L~~L~l~~~~~~~~i~~~~~~l~~L~~L~~~~~~~~~~~~l~~L~~--L~~L~l~~~~~ 675 (788)
+++++|.+..++.. +..+.+|+.+++.++.+.. + ..+..+..+..+++.++....+..+..+.. |+.+++.++.
T Consensus 167 l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~~-i-~~~~~~~~l~~~~l~~n~i~~~~~l~~~~~~~L~~l~l~~n~- 243 (414)
T KOG0531|consen 167 LDLSYNRIVDIENDELSELISLEELDLGGNSIRE-I-EGLDLLKKLVLLSLLDNKISKLEGLNELVMLHLRELYLSGNR- 243 (414)
T ss_pred ccCCcchhhhhhhhhhhhccchHHHhccCCchhc-c-cchHHHHHHHHhhcccccceeccCcccchhHHHHHHhcccCc-
Confidence 99999988877654 5889999999999886653 2 001334444444444444555555555555 8899998886
Q ss_pred cChhcHHHhccCCCCCCEEEeecCCCCCcccccccCCCccccccc---cccccc--cccCcc-cCCCCCcceEEEecccc
Q 003890 676 CYHSGVSKSLCELHKLECLKLVNERKPSRMVLYEYQFPPTDMARI---LSQLIR--QEFVES-EMSLPLLQLLDLEESDE 749 (788)
Q Consensus 676 ~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~l~~~~~L~~L---~~~l~~--~~lp~~-l~~l~~L~~L~L~~~~l 749 (788)
....+..+..+..+..|++.++... ..+.+...+.+..+ .+.+.. ...... ....+.++.+.+.+|+.
T Consensus 244 --i~~~~~~~~~~~~l~~l~~~~n~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (414)
T KOG0531|consen 244 --ISRSPEGLENLKNLPVLDLSSNRIS----NLEGLERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTLTLELNPI 317 (414)
T ss_pred --cccccccccccccccccchhhcccc----ccccccccchHHHhccCcchhcchhhhhccccccccccccccccccCcc
Confidence 2222255677788888888853322 23333344444444 222210 111211 34578899999999987
Q ss_pred ccc
Q 003890 750 EDD 752 (788)
Q Consensus 750 ~~~ 752 (788)
...
T Consensus 318 ~~~ 320 (414)
T KOG0531|consen 318 RKI 320 (414)
T ss_pred ccc
Confidence 764
No 55
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.21 E-value=3.7e-07 Score=93.02 Aligned_cols=220 Identities=13% Similarity=0.084 Sum_probs=118.6
Q ss_pred hhhcCCccccEEEecCCCCC-----CCCccccCCCCccEEEecCC---C-CcccCh-------hhcCCCCCcEEEccCCC
Q 003890 542 NFCEKFKHLRILNLGSAVLV-----QFPPGLENLFHLKYLKLNIP---S-LKCLPS-------LLCTLLNLQTLEMPSSY 605 (788)
Q Consensus 542 ~~~~~l~~L~~L~L~~~~l~-----~lp~~i~~L~~L~~L~L~~~---~-i~~lp~-------~i~~L~~L~~L~L~~~~ 605 (788)
.....+..+..|+|++|.+. .+...+.+.++|+.-+++.- + ..++|+ .+-..++|++||||.|-
T Consensus 24 ~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA 103 (382)
T KOG1909|consen 24 EELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNA 103 (382)
T ss_pred HHhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccc
Confidence 44455666666666666654 23344555556666666541 1 224444 33345578888888872
Q ss_pred C--cccc---hhhhcccccceeeccCccCCCCCcCCcCcc--ccccccccccccccCccccCCCCCCCeEEEEccC--Cc
Q 003890 606 V--DQSP---EDIWMMQKLMHLNFGSITLPAPPKNYSSSL--KNLIFISTLNPSSCTPDILGRLPNVQTLRISGDL--SC 676 (788)
Q Consensus 606 l--~~lp---~~l~~L~~L~~L~l~~~~~~~~i~~~~~~l--~~L~~L~~~~~~~~~~~~l~~L~~L~~L~l~~~~--~~ 676 (788)
+ ..++ .-+.++.+|++|++.+|.+.+.- +.. ..|..|... ...+.-++|+.+....|. ..
T Consensus 104 ~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~a----g~~l~~al~~l~~~-------kk~~~~~~Lrv~i~~rNrlen~ 172 (382)
T KOG1909|consen 104 FGPKGIRGLEELLSSCTDLEELYLNNCGLGPEA----GGRLGRALFELAVN-------KKAASKPKLRVFICGRNRLENG 172 (382)
T ss_pred cCccchHHHHHHHHhccCHHHHhhhcCCCChhH----HHHHHHHHHHHHHH-------hccCCCcceEEEEeeccccccc
Confidence 2 2222 23566778888888877654322 111 122222211 112333456666665554 12
Q ss_pred ChhcHHHhccCCCCCCEEEeecCCCCCcc--cccccCCCccccccc---ccccc---ccccCcccCCCCCcceEEEeccc
Q 003890 677 YHSGVSKSLCELHKLECLKLVNERKPSRM--VLYEYQFPPTDMARI---LSQLI---RQEFVESEMSLPLLQLLDLEESD 748 (788)
Q Consensus 677 ~~~~~~~~l~~l~~L~~L~L~~~~~~~~~--~~~~~l~~~~~L~~L---~~~l~---~~~lp~~l~~l~~L~~L~L~~~~ 748 (788)
....+...+...+.|+.+.+..+....+. .....+..+++|+.| .|.++ +..+...+..+++|+.|++++|.
T Consensus 173 ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcl 252 (382)
T KOG1909|consen 173 GATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCL 252 (382)
T ss_pred cHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccc
Confidence 23333444555566666666633222110 123344556666666 22221 12223344567899999999999
Q ss_pred cccccccCCcccc-----cccccCCeeEecccC
Q 003890 749 EEDDERSDILEIL-----QDINDFVHESEEAID 776 (788)
Q Consensus 749 l~~~~~~~~l~~l-----~~L~~L~~L~L~~~~ 776 (788)
+... ..-.+ ...|+|+.|.+.+|.
T Consensus 253 l~~~----Ga~a~~~al~~~~p~L~vl~l~gNe 281 (382)
T KOG1909|consen 253 LENE----GAIAFVDALKESAPSLEVLELAGNE 281 (382)
T ss_pred cccc----cHHHHHHHHhccCCCCceeccCcch
Confidence 9876 33222 348999999999985
No 56
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=98.13 E-value=2.7e-05 Score=83.02 Aligned_cols=245 Identities=13% Similarity=0.058 Sum_probs=124.0
Q ss_pred CCcccchhcHHHHHHHHhcC---CCCcEEEEEEcCCCChHHHHHHHHHcccCcccccceeEEEEeCCCCChHHHHHHHHH
Q 003890 185 LDISEFERGREELFDLLIEG---PSGLSVVAILNGSGFDKTAFAADTYNNNHIKFYFDCLAWVRVSIAYDSGKILDDIIK 261 (788)
Q Consensus 185 ~~~vGr~~~~~~i~~~L~~~---~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~ 261 (788)
.+|||++..++++..++... ......+.++|++|+|||+||+.+.+. ....| ..+..+...... .+...+.
T Consensus 4 ~~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~--~~~~~---~~~~~~~~~~~~-~l~~~l~ 77 (305)
T TIGR00635 4 AEFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANE--MGVNL---KITSGPALEKPG-DLAAILT 77 (305)
T ss_pred HHHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHH--hCCCE---EEeccchhcCch-hHHHHHH
Confidence 57999999999999888632 223556789999999999999999983 33222 122211111112 2223333
Q ss_pred HcCCCCCC--cccccCCHHHHHHHHHHHhcCCcEEEEEeCCCCChhhHHHHhhhcCCCCCCcEEEEecCChHHHhh----
Q 003890 262 SVMPPSRV--SVIIGEDYKLKKTILRDYLTNKKYFIVLDDVFNDSDIWDDLEQVLPDNQNGSRVLITVTDLDLLES---- 335 (788)
Q Consensus 262 ~l~~~~~~--~~~~~~~~~~~~~~l~~~l~~kr~LlVLDdvw~~~~~~~~l~~~l~~~~~gskIivTTR~~~v~~~---- 335 (788)
.+....-- ++.+..+ ....+.+...+.+.+..+|+|+.. ....|.. .+ .+.+-|..||+...+...
T Consensus 78 ~~~~~~vl~iDEi~~l~-~~~~e~l~~~~~~~~~~~v~~~~~-~~~~~~~---~~---~~~~li~~t~~~~~l~~~l~sR 149 (305)
T TIGR00635 78 NLEEGDVLFIDEIHRLS-PAVEELLYPAMEDFRLDIVIGKGP-SARSVRL---DL---PPFTLVGATTRAGMLTSPLRDR 149 (305)
T ss_pred hcccCCEEEEehHhhhC-HHHHHHhhHHHhhhheeeeeccCc-cccceee---cC---CCeEEEEecCCccccCHHHHhh
Confidence 33221100 0001111 123445666666677777777776 4443321 11 225566777776443332
Q ss_pred ccccCCCccch------------------------HHHHHHHHhhccCchhHHHHHHHc-------CCCCccCCccCCCh
Q 003890 336 LEMENGEKIRP------------------------DSVLIGGQMIRLKHESWQFFILHY-------GSMPLENYVQGEAI 384 (788)
Q Consensus 336 ~~~~~~~~~~~------------------------ai~~ig~~L~~~~~~~W~~~l~~~-------~~~~~~~~~~~~~i 384 (788)
++.. +..+| |+..++..-.+.+... ..++... ....+. .+.....
T Consensus 150 ~~~~--~~l~~l~~~e~~~il~~~~~~~~~~~~~~al~~ia~~~~G~pR~~-~~ll~~~~~~a~~~~~~~it-~~~v~~~ 225 (305)
T TIGR00635 150 FGII--LRLEFYTVEELAEIVSRSAGLLNVEIEPEAALEIARRSRGTPRIA-NRLLRRVRDFAQVRGQKIIN-RDIALKA 225 (305)
T ss_pred cceE--EEeCCCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCCCcchH-HHHHHHHHHHHHHcCCCCcC-HHHHHHH
Confidence 3211 11211 4555554443333221 1122111 001000 0111123
Q ss_pred HHHHHhhhccCCCChhhHHHhh-hhhccCCCceechhHHHHHHHHhCCCCCCHHHHHHHHHH-HHHhCCccccee
Q 003890 385 PTIWRQIYAVMELPFHLKVCCI-YLCVFRPSIEISTRQLYQLWVAEGFIPYNSEETAEHYLK-ELIHRGFIQVSK 457 (788)
Q Consensus 385 ~~~l~~~~sy~~L~~~lk~cfl-~~~~Fp~~~~i~~~~Li~~W~a~g~i~~~~~~~~~~~~~-~L~~~~ll~~~~ 457 (788)
...+. .+|..++++.+.-+. .++.++.+ .+..+++.... |. ....++..++ .|++++|+....
T Consensus 226 l~~l~--~~~~~l~~~~~~~L~al~~~~~~~-~~~~~~ia~~l---g~----~~~~~~~~~e~~Li~~~li~~~~ 290 (305)
T TIGR00635 226 LEMLM--IDELGLDEIDRKLLSVLIEQFQGG-PVGLKTLAAAL---GE----DADTIEDVYEPYLLQIGFLQRTP 290 (305)
T ss_pred HHHhC--CCCCCCCHHHHHHHHHHHHHhCCC-cccHHHHHHHh---CC----CcchHHHhhhHHHHHcCCcccCC
Confidence 33356 678888887776555 55666544 44444433322 22 2345667777 699999997443
No 57
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=98.12 E-value=5.1e-05 Score=81.56 Aligned_cols=247 Identities=13% Similarity=0.049 Sum_probs=123.6
Q ss_pred CCCCcccchhcHHHHHHHHhc---CCCCcEEEEEEcCCCChHHHHHHHHHcccCcccccceeEEEEeCCCCChHHHHHHH
Q 003890 183 PRLDISEFERGREELFDLLIE---GPSGLSVVAILNGSGFDKTAFAADTYNNNHIKFYFDCLAWVRVSIAYDSGKILDDI 259 (788)
Q Consensus 183 ~~~~~vGr~~~~~~i~~~L~~---~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i 259 (788)
.+.+++|++..++.+..++.. .......+.++|++|+||||||+.+++. ....| .++..+ .......+..+
T Consensus 23 ~~~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~--l~~~~---~~~~~~-~~~~~~~l~~~ 96 (328)
T PRK00080 23 SLDEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANE--MGVNI---RITSGP-ALEKPGDLAAI 96 (328)
T ss_pred CHHHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHH--hCCCe---EEEecc-cccChHHHHHH
Confidence 348899999999998888753 2334667889999999999999999984 33322 122211 11222223344
Q ss_pred HHHcCCCCCC--cccccCCHHHHHHHHHHHhcCCcEEEEEeCCCCChhhHHHHhhhcCCCCCCcEEEEecCChHHHh---
Q 003890 260 IKSVMPPSRV--SVIIGEDYKLKKTILRDYLTNKKYFIVLDDVFNDSDIWDDLEQVLPDNQNGSRVLITVTDLDLLE--- 334 (788)
Q Consensus 260 l~~l~~~~~~--~~~~~~~~~~~~~~l~~~l~~kr~LlVLDdvw~~~~~~~~l~~~l~~~~~gskIivTTR~~~v~~--- 334 (788)
+..+....-- ++.+..+ ....+.+...+.+.+..+|+|+.. +...+. ..+ .+.+-|..|||...+..
T Consensus 97 l~~l~~~~vl~IDEi~~l~-~~~~e~l~~~~e~~~~~~~l~~~~-~~~~~~---~~l---~~~~li~at~~~~~l~~~L~ 168 (328)
T PRK00080 97 LTNLEEGDVLFIDEIHRLS-PVVEEILYPAMEDFRLDIMIGKGP-AARSIR---LDL---PPFTLIGATTRAGLLTSPLR 168 (328)
T ss_pred HHhcccCCEEEEecHhhcc-hHHHHHHHHHHHhcceeeeeccCc-ccccee---ecC---CCceEEeecCCcccCCHHHH
Confidence 4433221100 0000000 122333455555666666666654 322111 011 22456777777543332
Q ss_pred -hccccCCCccch------------------------HHHHHHHHhhccCchhHHHHHHHcC-------CCCccCCccCC
Q 003890 335 -SLEMENGEKIRP------------------------DSVLIGGQMIRLKHESWQFFILHYG-------SMPLENYVQGE 382 (788)
Q Consensus 335 -~~~~~~~~~~~~------------------------ai~~ig~~L~~~~~~~W~~~l~~~~-------~~~~~~~~~~~ 382 (788)
.++.. +...+ |+..++..-.+.+.. ...+++... ...+. .+...
T Consensus 169 sRf~~~--~~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~ia~~~~G~pR~-a~~~l~~~~~~a~~~~~~~I~-~~~v~ 244 (328)
T PRK00080 169 DRFGIV--QRLEFYTVEELEKIVKRSARILGVEIDEEGALEIARRSRGTPRI-ANRLLRRVRDFAQVKGDGVIT-KEIAD 244 (328)
T ss_pred HhcCee--eecCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHcCCCchH-HHHHHHHHHHHHHHcCCCCCC-HHHHH
Confidence 23211 22211 455555444443322 111111110 01010 01112
Q ss_pred ChHHHHHhhhccCCCChhhHHHhh-hhhccCCCceechhHHHHHHHHhCCCCCCHHHHHHHHHH-HHHhCCccccee
Q 003890 383 AIPTIWRQIYAVMELPFHLKVCCI-YLCVFRPSIEISTRQLYQLWVAEGFIPYNSEETAEHYLK-ELIHRGFIQVSK 457 (788)
Q Consensus 383 ~i~~~l~~~~sy~~L~~~lk~cfl-~~~~Fp~~~~i~~~~Li~~W~a~g~i~~~~~~~~~~~~~-~L~~~~ll~~~~ 457 (788)
.....+. ..|..|++..+.-+. ....|+.+ .+..+.+.... |. ..+.+++.++ .|++.+|++...
T Consensus 245 ~~l~~~~--~~~~~l~~~~~~~l~~~~~~~~~~-~~~~~~~a~~l---g~----~~~~~~~~~e~~Li~~~li~~~~ 311 (328)
T PRK00080 245 KALDMLG--VDELGLDEMDRKYLRTIIEKFGGG-PVGLDTLAAAL---GE----ERDTIEDVYEPYLIQQGFIQRTP 311 (328)
T ss_pred HHHHHhC--CCcCCCCHHHHHHHHHHHHHcCCC-ceeHHHHHHHH---CC----CcchHHHHhhHHHHHcCCcccCC
Confidence 2334455 667788887777664 66677766 46655554332 21 2344555666 899999997544
No 58
>PLN03150 hypothetical protein; Provisional
Probab=98.11 E-value=6.6e-06 Score=95.87 Aligned_cols=105 Identities=20% Similarity=0.289 Sum_probs=87.4
Q ss_pred ccceEEecCCCCchhhhhhhhhhhcCCccccEEEecCCCCC-CCCccccCCCCccEEEecCCCCc-ccChhhcCCCCCcE
Q 003890 521 YLQSFLNHSSESDHLALIDCENFCEKFKHLRILNLGSAVLV-QFPPGLENLFHLKYLKLNIPSLK-CLPSLLCTLLNLQT 598 (788)
Q Consensus 521 ~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~-~lp~~i~~L~~L~~L~L~~~~i~-~lp~~i~~L~~L~~ 598 (788)
.++.|.+.++.... .+|..+..+++|+.|+|++|.+. .+|..++.+.+|++|+|++|.+. .+|+.+++|.+|++
T Consensus 419 ~v~~L~L~~n~L~g----~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~ 494 (623)
T PLN03150 419 FIDGLGLDNQGLRG----FIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRI 494 (623)
T ss_pred EEEEEECCCCCccc----cCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCE
Confidence 46778877776532 34578899999999999999997 88999999999999999999988 78999999999999
Q ss_pred EEccCCCCc-ccchhhhcc-cccceeeccCccC
Q 003890 599 LEMPSSYVD-QSPEDIWMM-QKLMHLNFGSITL 629 (788)
Q Consensus 599 L~L~~~~l~-~lp~~l~~L-~~L~~L~l~~~~~ 629 (788)
|+|++|.+. .+|..++.+ .++..+++.+|..
T Consensus 495 L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~ 527 (623)
T PLN03150 495 LNLNGNSLSGRVPAALGGRLLHRASFNFTDNAG 527 (623)
T ss_pred EECcCCcccccCChHHhhccccCceEEecCCcc
Confidence 999999654 788877664 4667777776643
No 59
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.08 E-value=3.2e-05 Score=83.32 Aligned_cols=111 Identities=17% Similarity=0.150 Sum_probs=87.2
Q ss_pred CCcccchhcHHHHHHHHhcC--CCCcEEEEEEcCCCChHHHHHHHHHcccCcccccce--eEEEEeCCCCChHHHHHHHH
Q 003890 185 LDISEFERGREELFDLLIEG--PSGLSVVAILNGSGFDKTAFAADTYNNNHIKFYFDC--LAWVRVSIAYDSGKILDDII 260 (788)
Q Consensus 185 ~~~vGr~~~~~~i~~~L~~~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~--~~wv~vs~~~~~~~~~~~il 260 (788)
..+.+||.+++++...|... +....-+.|+|.+|.|||+.++.|.. ++...... .++|++-......+++.+|+
T Consensus 17 ~~l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~--~l~~~~~~~~~~yINc~~~~t~~~i~~~i~ 94 (366)
T COG1474 17 EELPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVME--ELEESSANVEVVYINCLELRTPYQVLSKIL 94 (366)
T ss_pred ccccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHH--HHHhhhccCceEEEeeeeCCCHHHHHHHHH
Confidence 55889999999999998652 22233388999999999999999999 55544333 68999999999999999999
Q ss_pred HHcCCCCCCcccccCCHHHHHHHHHHHhc--CCcEEEEEeCCC
Q 003890 261 KSVMPPSRVSVIIGEDYKLKKTILRDYLT--NKKYFIVLDDVF 301 (788)
Q Consensus 261 ~~l~~~~~~~~~~~~~~~~~~~~l~~~l~--~kr~LlVLDdvw 301 (788)
.+++.... ......+....+.+.+. ++.+++|||++.
T Consensus 95 ~~~~~~p~----~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid 133 (366)
T COG1474 95 NKLGKVPL----TGDSSLEILKRLYDNLSKKGKTVIVILDEVD 133 (366)
T ss_pred HHcCCCCC----CCCchHHHHHHHHHHHHhcCCeEEEEEcchh
Confidence 99973332 45566777777777774 588999999996
No 60
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.08 E-value=1.1e-05 Score=82.27 Aligned_cols=59 Identities=20% Similarity=0.192 Sum_probs=41.6
Q ss_pred cccchhcHHHHHHHHhcCCCCcEEEEEEcCCCChHHHHHHHHHcccCcccccceeEEEEeCCC
Q 003890 187 ISEFERGREELFDLLIEGPSGLSVVAILNGSGFDKTAFAADTYNNNHIKFYFDCLAWVRVSIA 249 (788)
Q Consensus 187 ~vGr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~ 249 (788)
|+||+.++++|.+++..+. .+.+.|+|+.|+|||+|++.+.+. .++.-..++|+...+.
T Consensus 1 F~gR~~el~~l~~~l~~~~--~~~~~l~G~rg~GKTsLl~~~~~~--~~~~~~~~~y~~~~~~ 59 (234)
T PF01637_consen 1 FFGREKELEKLKELLESGP--SQHILLYGPRGSGKTSLLKEFINE--LKEKGYKVVYIDFLEE 59 (234)
T ss_dssp S-S-HHHHHHHHHCHHH----SSEEEEEESTTSSHHHHHHHHHHH--CT--EECCCHHCCTTB
T ss_pred CCCHHHHHHHHHHHHHhhc--CcEEEEEcCCcCCHHHHHHHHHHH--hhhcCCcEEEEecccc
Confidence 6899999999999997654 678899999999999999999983 3222113555544444
No 61
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=98.02 E-value=1.2e-05 Score=85.65 Aligned_cols=93 Identities=10% Similarity=-0.065 Sum_probs=62.9
Q ss_pred cEEEEEEcCCCChHHHHHHHHHcccCcccccceeEEEEeCCC--CChHHHHHHHHHHcCCCCCCccc-cc-CCHHHHHHH
Q 003890 208 LSVVAILNGSGFDKTAFAADTYNNNHIKFYFDCLAWVRVSIA--YDSGKILDDIIKSVMPPSRVSVI-IG-EDYKLKKTI 283 (788)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~--~~~~~~~~~il~~l~~~~~~~~~-~~-~~~~~~~~~ 283 (788)
-..++|+|.+|+|||||++.+++.... ++|+..+|+.+.+. .++.++++.++..+-.......+ .. .-.+...+.
T Consensus 168 Gq~~~IvG~~g~GKTtL~~~i~~~I~~-nhfdv~v~VlLIgER~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v~e~ 246 (415)
T TIGR00767 168 GQRGLIVAPPKAGKTVLLQKIAQAITR-NHPEVELIVLLIDERPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMVIEK 246 (415)
T ss_pred CCEEEEECCCCCChhHHHHHHHHhhcc-cCCceEEEEEEcCCCCccHHHHHHHhhceEEEecCCCChHHHHHHHHHHHHH
Confidence 457899999999999999999995333 37999999999866 78999999996554333221100 00 001122222
Q ss_pred HHHH-hcCCcEEEEEeCCC
Q 003890 284 LRDY-LTNKKYFIVLDDVF 301 (788)
Q Consensus 284 l~~~-l~~kr~LlVLDdvw 301 (788)
.+.. -+|++++|++|++.
T Consensus 247 Ae~~~~~GkdVVLlIDEit 265 (415)
T TIGR00767 247 AKRLVEHKKDVVILLDSIT 265 (415)
T ss_pred HHHHHHcCCCeEEEEEChh
Confidence 2222 26899999999995
No 62
>PRK06893 DNA replication initiation factor; Validated
Probab=97.99 E-value=1.9e-05 Score=79.99 Aligned_cols=38 Identities=13% Similarity=0.131 Sum_probs=28.7
Q ss_pred cEEEEEEcCCCChHHHHHHHHHcccCcccccceeEEEEeC
Q 003890 208 LSVVAILNGSGFDKTAFAADTYNNNHIKFYFDCLAWVRVS 247 (788)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs 247 (788)
.+.+.++|.+|+|||+|++.+++. .........|+.++
T Consensus 39 ~~~l~l~G~~G~GKThL~~ai~~~--~~~~~~~~~y~~~~ 76 (229)
T PRK06893 39 QPFFYIWGGKSSGKSHLLKAVSNH--YLLNQRTAIYIPLS 76 (229)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH--HHHcCCCeEEeeHH
Confidence 467899999999999999999984 33333456676653
No 63
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=97.99 E-value=5.3e-05 Score=86.94 Aligned_cols=114 Identities=10% Similarity=-0.024 Sum_probs=77.8
Q ss_pred CCcccchhcHHHHHHHHhc---CCCCcEEEEEEcCCCChHHHHHHHHHcccCc---ccccc--eeEEEEeCCCCChHHHH
Q 003890 185 LDISEFERGREELFDLLIE---GPSGLSVVAILNGSGFDKTAFAADTYNNNHI---KFYFD--CLAWVRVSIAYDSGKIL 256 (788)
Q Consensus 185 ~~~vGr~~~~~~i~~~L~~---~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~---~~~F~--~~~wv~vs~~~~~~~~~ 256 (788)
..+.|||+++++|..+|.. +.....++-|+|.+|.|||+.++.|.+..+. +...+ .+++|.+..-.+...+.
T Consensus 755 D~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~sIY 834 (1164)
T PTZ00112 755 KYLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNAAY 834 (1164)
T ss_pred CcCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHHHH
Confidence 6788999999999999865 2333467889999999999999999874211 12222 26677776666778888
Q ss_pred HHHHHHcCCCCCCcccccCCHHHHHHHHHHHhc---CCcEEEEEeCCC
Q 003890 257 DDIIKSVMPPSRVSVIIGEDYKLKKTILRDYLT---NKKYFIVLDDVF 301 (788)
Q Consensus 257 ~~il~~l~~~~~~~~~~~~~~~~~~~~l~~~l~---~kr~LlVLDdvw 301 (788)
..|..++..... ............+...+. +...+||||+|.
T Consensus 835 qvI~qqL~g~~P---~~GlsS~evLerLF~~L~k~~r~v~IIILDEID 879 (1164)
T PTZ00112 835 QVLYKQLFNKKP---PNALNSFKILDRLFNQNKKDNRNVSILIIDEID 879 (1164)
T ss_pred HHHHHHHcCCCC---CccccHHHHHHHHHhhhhcccccceEEEeehHh
Confidence 888888854432 123333444455555442 234589999995
No 64
>PRK13342 recombination factor protein RarA; Reviewed
Probab=97.98 E-value=1.8e-05 Score=87.67 Aligned_cols=47 Identities=19% Similarity=0.116 Sum_probs=37.2
Q ss_pred CCCCcccchhcHHH---HHHHHhcCCCCcEEEEEEcCCCChHHHHHHHHHcc
Q 003890 183 PRLDISEFERGREE---LFDLLIEGPSGLSVVAILNGSGFDKTAFAADTYNN 231 (788)
Q Consensus 183 ~~~~~vGr~~~~~~---i~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 231 (788)
.+.++||.+..+.. +..++..+. ...+.++|++|+||||||+.+++.
T Consensus 10 ~l~d~vGq~~~v~~~~~L~~~i~~~~--~~~ilL~GppGtGKTtLA~~ia~~ 59 (413)
T PRK13342 10 TLDEVVGQEHLLGPGKPLRRMIEAGR--LSSMILWGPPGTGKTTLARIIAGA 59 (413)
T ss_pred CHHHhcCcHHHhCcchHHHHHHHcCC--CceEEEECCCCCCHHHHHHHHHHH
Confidence 34779998877655 777775543 567788999999999999999983
No 65
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.96 E-value=1.1e-05 Score=57.83 Aligned_cols=39 Identities=28% Similarity=0.400 Sum_probs=20.6
Q ss_pred CccEEEecCCCCcccChhhcCCCCCcEEEccCCCCcccc
Q 003890 572 HLKYLKLNIPSLKCLPSLLCTLLNLQTLEMPSSYVDQSP 610 (788)
Q Consensus 572 ~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~lp 610 (788)
+|++|++++|+|+.+|+.+++|++|++|++++|.+..+|
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~ 40 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDIS 40 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCc
Confidence 455555555555555555555555555555555555443
No 66
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=97.94 E-value=3.8e-05 Score=83.17 Aligned_cols=51 Identities=18% Similarity=0.003 Sum_probs=41.2
Q ss_pred CCCCCCCCcccchhcHHHHHHHHhcCCCCcEEEEEEcCCCChHHHHHHHHHcc
Q 003890 179 SEGQPRLDISEFERGREELFDLLIEGPSGLSVVAILNGSGFDKTAFAADTYNN 231 (788)
Q Consensus 179 ~~~~~~~~~vGr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 231 (788)
..|..+.+++|++..++.+.+++..+. .+.+-++|.+|+||||+|+.+.+.
T Consensus 9 y~P~~~~~~~g~~~~~~~L~~~~~~~~--~~~lll~Gp~GtGKT~la~~~~~~ 59 (337)
T PRK12402 9 YRPALLEDILGQDEVVERLSRAVDSPN--LPHLLVQGPPGSGKTAAVRALARE 59 (337)
T ss_pred hCCCcHHHhcCCHHHHHHHHHHHhCCC--CceEEEECCCCCCHHHHHHHHHHH
Confidence 334445789999999999999887653 456779999999999999999873
No 67
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=97.94 E-value=0.00012 Score=84.75 Aligned_cols=147 Identities=16% Similarity=0.098 Sum_probs=90.1
Q ss_pred CCCCCCcccchhcHHHHHHHHhcCCCCcEEEEEEcCCCChHHHHHHHHHcccCcccccc---eeEEEEeCCC---CChHH
Q 003890 181 GQPRLDISEFERGREELFDLLIEGPSGLSVVAILNGSGFDKTAFAADTYNNNHIKFYFD---CLAWVRVSIA---YDSGK 254 (788)
Q Consensus 181 ~~~~~~~vGr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~---~~~wv~vs~~---~~~~~ 254 (788)
+..+++++|.+..+..+.+.+.... ...+.|+|.+|+||||||+.+++.......++ ..-|+.+... .+...
T Consensus 150 p~~~~~iiGqs~~~~~l~~~ia~~~--~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~~d~~~ 227 (615)
T TIGR02903 150 PRAFSEIVGQERAIKALLAKVASPF--PQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLRWDPRE 227 (615)
T ss_pred cCcHHhceeCcHHHHHHHHHHhcCC--CCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhccCCHHH
Confidence 3444789999999999888875433 56799999999999999999988543333331 2445554321 22222
Q ss_pred HHHHH---------------HHHcCCCCCC--------------cccccCCHHHHHHHHHHHhcCCcEEEEEeCCCC-Ch
Q 003890 255 ILDDI---------------IKSVMPPSRV--------------SVIIGEDYKLKKTILRDYLTNKKYFIVLDDVFN-DS 304 (788)
Q Consensus 255 ~~~~i---------------l~~l~~~~~~--------------~~~~~~~~~~~~~~l~~~l~~kr~LlVLDdvw~-~~ 304 (788)
+...+ +...+..... ++.... ....+..+.+.+++++++++-|+.|. +.
T Consensus 228 i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~L-d~~~Q~~Ll~~Le~~~v~~~~~~~~~~~~ 306 (615)
T TIGR02903 228 VTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGEL-DPLLQNKLLKVLEDKRVEFSSSYYDPDDP 306 (615)
T ss_pred HhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccC-CHHHHHHHHHHHhhCeEEeecceeccCCc
Confidence 22111 1111110000 001111 23457788889999999999887772 34
Q ss_pred hhHHHHhhhcCCCCCCcEEEE--ecCCh
Q 003890 305 DIWDDLEQVLPDNQNGSRVLI--TVTDL 330 (788)
Q Consensus 305 ~~~~~l~~~l~~~~~gskIiv--TTR~~ 330 (788)
..|+.+...+....+...|+| ||++.
T Consensus 307 ~~~~~ik~~~~~~~~~~~VLI~aTt~~~ 334 (615)
T TIGR02903 307 NVPKYIKKLFEEGAPADFVLIGATTRDP 334 (615)
T ss_pred ccchhhhhhcccCccceEEEEEeccccc
Confidence 578888877776666665666 56643
No 68
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.93 E-value=3.3e-07 Score=91.08 Aligned_cols=80 Identities=20% Similarity=0.156 Sum_probs=45.7
Q ss_pred cccEEEecCCCCC--CCCccccCCCCccEEEecCCCCc-ccChhhcCCCCCcEEEccCC-CCcccch--hhhccccccee
Q 003890 549 HLRILNLGSAVLV--QFPPGLENLFHLKYLKLNIPSLK-CLPSLLCTLLNLQTLEMPSS-YVDQSPE--DIWMMQKLMHL 622 (788)
Q Consensus 549 ~L~~L~L~~~~l~--~lp~~i~~L~~L~~L~L~~~~i~-~lp~~i~~L~~L~~L~L~~~-~l~~lp~--~l~~L~~L~~L 622 (788)
.|++|||++..|+ .+-.-+..+.+|+.|++.++++. .+-..+.+-.+|+.|+|+.| .+++... -+.+++.|..|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 4666666666655 33333455566666666666655 33445556666777777766 4444322 24566666666
Q ss_pred eccCcc
Q 003890 623 NFGSIT 628 (788)
Q Consensus 623 ~l~~~~ 628 (788)
+++.|.
T Consensus 266 NlsWc~ 271 (419)
T KOG2120|consen 266 NLSWCF 271 (419)
T ss_pred CchHhh
Confidence 666553
No 69
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.92 E-value=2.1e-07 Score=92.47 Aligned_cols=178 Identities=16% Similarity=0.086 Sum_probs=102.0
Q ss_pred CccEEEecCCCCc--ccChhhcCCCCCcEEEccCCCCcc-cchhhhcccccceeeccCccCCCCC--cCCcCcccccccc
Q 003890 572 HLKYLKLNIPSLK--CLPSLLCTLLNLQTLEMPSSYVDQ-SPEDIWMMQKLMHLNFGSITLPAPP--KNYSSSLKNLIFI 646 (788)
Q Consensus 572 ~L~~L~L~~~~i~--~lp~~i~~L~~L~~L~L~~~~l~~-lp~~l~~L~~L~~L~l~~~~~~~~i--~~~~~~l~~L~~L 646 (788)
.|++|+|+++.|+ .+-.-++.+.+|+.|.|.|+.+.+ +...+.+-.+|+.|+++.+..-... .-.+.+++.|+.|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 5889999988776 454456788889999998886654 4446888889999998876432211 1113667777777
Q ss_pred cccccc--ccCccc-cCC-CCCCCeEEEEccCCcChhcHHHh-ccCCCCCCEEEeecCCCCCcccccccCCCcccccccc
Q 003890 647 STLNPS--SCTPDI-LGR-LPNVQTLRISGDLSCYHSGVSKS-LCELHKLECLKLVNERKPSRMVLYEYQFPPTDMARIL 721 (788)
Q Consensus 647 ~~~~~~--~~~~~~-l~~-L~~L~~L~l~~~~~~~~~~~~~~-l~~l~~L~~L~L~~~~~~~~~~~~~~l~~~~~L~~L~ 721 (788)
+++=+. ...... ..+ -++|..|+|+|+..+......+. ...+++|..|+|+++....+ ....
T Consensus 266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~-~~~~------------ 332 (419)
T KOG2120|consen 266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKN-DCFQ------------ 332 (419)
T ss_pred CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCc-hHHH------------
Confidence 766211 111111 111 24677788888763333322232 35567888888886544321 1112
Q ss_pred ccccccccCcccCCCCCcceEEEeccccccccccCCcccccccccCCeeEeccc
Q 003890 722 SQLIRQEFVESEMSLPLLQLLDLEESDEEDDERSDILEILQDINDFVHESEEAI 775 (788)
Q Consensus 722 ~~l~~~~lp~~l~~l~~L~~L~L~~~~l~~~~~~~~l~~l~~L~~L~~L~L~~~ 775 (788)
.|..|+.|++|.|+.|..... +.+-.+...|.|.+|++.||
T Consensus 333 ----------~~~kf~~L~~lSlsRCY~i~p---~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 333 ----------EFFKFNYLQHLSLSRCYDIIP---ETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred ----------HHHhcchheeeehhhhcCCCh---HHeeeeccCcceEEEEeccc
Confidence 233455666666666653321 02223455666666666665
No 70
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.88 E-value=1.5e-05 Score=57.22 Aligned_cols=40 Identities=30% Similarity=0.483 Sum_probs=35.3
Q ss_pred ccccEEEecCCCCCCCCccccCCCCccEEEecCCCCcccC
Q 003890 548 KHLRILNLGSAVLVQFPPGLENLFHLKYLKLNIPSLKCLP 587 (788)
Q Consensus 548 ~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~lp 587 (788)
++|++|++++|.|+.+|..+++|++|++|++++|+++.+|
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~ 40 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDIS 40 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCc
Confidence 4799999999999999988999999999999999999875
No 71
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=97.84 E-value=0.00016 Score=77.13 Aligned_cols=125 Identities=13% Similarity=0.213 Sum_probs=81.2
Q ss_pred CCcccchhcHHHHHHHHhcCCCCcEEEEEEcCCCChHHHHHHHHHcc----cCcccccceeEEEEe-CCCCChHHHHHHH
Q 003890 185 LDISEFERGREELFDLLIEGPSGLSVVAILNGSGFDKTAFAADTYNN----NHIKFYFDCLAWVRV-SIAYDSGKILDDI 259 (788)
Q Consensus 185 ~~~vGr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~----~~~~~~F~~~~wv~v-s~~~~~~~~~~~i 259 (788)
.+++|-+..++.+.+.+..+. -....-++|+.|+||||+|+.++.. .....|.|...|... +....+++ .+++
T Consensus 4 ~~i~g~~~~~~~l~~~~~~~~-~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~-ir~~ 81 (313)
T PRK05564 4 HTIIGHENIKNRIKNSIIKNR-FSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDD-IRNI 81 (313)
T ss_pred hhccCcHHHHHHHHHHHHcCC-CCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHH-HHHH
Confidence 568899899999999987653 3467789999999999999988872 112345555555432 22233333 2233
Q ss_pred HHHcCCCCCCcccccCCHHHHHHHHHHHhcCCcEEEEEeCCCC-ChhhHHHHhhhcCCCCCCcEEEEecCChH
Q 003890 260 IKSVMPPSRVSVIIGEDYKLKKTILRDYLTNKKYFIVLDDVFN-DSDIWDDLEQVLPDNQNGSRVLITVTDLD 331 (788)
Q Consensus 260 l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVLDdvw~-~~~~~~~l~~~l~~~~~gskIivTTR~~~ 331 (788)
.+.+.... ..+++-++|+|++.. +...++.+...+.....++.+|++|.+.+
T Consensus 82 ~~~~~~~p--------------------~~~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~ 134 (313)
T PRK05564 82 IEEVNKKP--------------------YEGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLE 134 (313)
T ss_pred HHHHhcCc--------------------ccCCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChH
Confidence 33332211 123444555665532 67789999999988788999998887643
No 72
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.82 E-value=0.00018 Score=78.22 Aligned_cols=140 Identities=14% Similarity=0.044 Sum_probs=75.4
Q ss_pred CCCCCCcccchhcHHHHHHHHhcCCCCcEEEEEEcCCCChHHHHHHHHHcccCcccccceeEEEEeCCCCChHHHHHHHH
Q 003890 181 GQPRLDISEFERGREELFDLLIEGPSGLSVVAILNGSGFDKTAFAADTYNNNHIKFYFDCLAWVRVSIAYDSGKILDDII 260 (788)
Q Consensus 181 ~~~~~~~vGr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il 260 (788)
|..+.+++|-+..++.+.+.+..+. -...+-++|+.|+||||+|+.+...-....... ...+..-...+.+.
T Consensus 12 P~~~~~iiGq~~~~~~l~~~~~~~~-~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~-------~~pc~~c~~c~~~~ 83 (363)
T PRK14961 12 PQYFRDIIGQKHIVTAISNGLSLGR-IHHAWLLSGTRGVGKTTIARLLAKSLNCQNGIT-------SNPCRKCIICKEIE 83 (363)
T ss_pred CCchhhccChHHHHHHHHHHHHcCC-CCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCC-------CCCCCCCHHHHHHh
Confidence 3444889999999999999887653 345678999999999999999987321110000 00000001111111
Q ss_pred HHcCCCCCCccc-ccCCHHHHHHHHHHHh-----cCCcEEEEEeCCCC-ChhhHHHHhhhcCCCCCCcEEEEecCC
Q 003890 261 KSVMPPSRVSVI-IGEDYKLKKTILRDYL-----TNKKYFIVLDDVFN-DSDIWDDLEQVLPDNQNGSRVLITVTD 329 (788)
Q Consensus 261 ~~l~~~~~~~~~-~~~~~~~~~~~l~~~l-----~~kr~LlVLDdvw~-~~~~~~~l~~~l~~~~~gskIivTTR~ 329 (788)
............ .....++... +.+.+ .+++-++|+|++.. ....++.+...+.......++|++|.+
T Consensus 84 ~~~~~d~~~~~~~~~~~v~~ir~-i~~~~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~fIl~t~~ 158 (363)
T PRK14961 84 KGLCLDLIEIDAASRTKVEEMRE-ILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATTD 158 (363)
T ss_pred cCCCCceEEecccccCCHHHHHH-HHHHHhcCcccCCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEcCC
Confidence 110000000000 0011222222 11221 24566999999963 345677888777766667777776654
No 73
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=97.79 E-value=0.00014 Score=83.12 Aligned_cols=142 Identities=11% Similarity=0.039 Sum_probs=78.1
Q ss_pred CCCCCCcccchhcHHHHHHHHhcCCCCcEEEEEEcCCCChHHHHHHHHHcccCcccccceeEEEEeCCCCChHHHHHHHH
Q 003890 181 GQPRLDISEFERGREELFDLLIEGPSGLSVVAILNGSGFDKTAFAADTYNNNHIKFYFDCLAWVRVSIAYDSGKILDDII 260 (788)
Q Consensus 181 ~~~~~~~vGr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il 260 (788)
+..|.++||.+..++.|.+++..+. -...+-++|..|+||||+|+.+.+...-...+. +..+..-...+.|.
T Consensus 12 PqtFdEVIGQe~Vv~~L~~aL~~gR-L~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~-------~~PCG~C~sCr~I~ 83 (830)
T PRK07003 12 PKDFASLVGQEHVVRALTHALDGGR-LHHAYLFTGTRGVGKTTLSRIFAKALNCETGVT-------SQPCGVCRACREID 83 (830)
T ss_pred CCcHHHHcCcHHHHHHHHHHHhcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCccCCC-------CCCCcccHHHHHHh
Confidence 3445889999999999999987654 245566999999999999998776321111110 01111111111221
Q ss_pred HHcCCCCCC-cccccCCHHHHHHHHHHHh----cCCcEEEEEeCCCC-ChhhHHHHhhhcCCCCCCcEEEEecCCh
Q 003890 261 KSVMPPSRV-SVIIGEDYKLKKTILRDYL----TNKKYFIVLDDVFN-DSDIWDDLEQVLPDNQNGSRVLITVTDL 330 (788)
Q Consensus 261 ~~l~~~~~~-~~~~~~~~~~~~~~l~~~l----~~kr~LlVLDdvw~-~~~~~~~l~~~l~~~~~gskIivTTR~~ 330 (788)
..-.....+ +.......+++.+.+.... .++.-++|+|++.. +...|+.+...+.....+.++|+||.+.
T Consensus 84 ~G~h~DviEIDAas~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FILaTtd~ 159 (830)
T PRK07003 84 EGRFVDYVEMDAASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDP 159 (830)
T ss_pred cCCCceEEEecccccccHHHHHHHHHHHHhccccCCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEEEEECCh
Confidence 100000000 0001112233333332221 24555888999963 4566888888776666678877777763
No 74
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.77 E-value=0.00015 Score=81.88 Aligned_cols=130 Identities=11% Similarity=0.021 Sum_probs=77.5
Q ss_pred CCCCCCcccchhcHHHHHHHHhcCCCCcEEEEEEcCCCChHHHHHHHHHcccCc-------------------cccccee
Q 003890 181 GQPRLDISEFERGREELFDLLIEGPSGLSVVAILNGSGFDKTAFAADTYNNNHI-------------------KFYFDCL 241 (788)
Q Consensus 181 ~~~~~~~vGr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~-------------------~~~F~~~ 241 (788)
|..|.+++|-+..++.+...+..+. -...+-++|+.|+||||+|+.+++.-.- .+.|...
T Consensus 12 P~~f~diiGq~~~v~~L~~~i~~~r-l~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dl 90 (546)
T PRK14957 12 PQSFAEVAGQQHALNSLVHALETQK-VHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDL 90 (546)
T ss_pred cCcHHHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCce
Confidence 3445889999999999999887653 3456778999999999999998862110 0112222
Q ss_pred EEEEeCCCCChHHHHHHHHHHcCCCCCCcccccCCHHHHHHHHHH-HhcCCcEEEEEeCCCC-ChhhHHHHhhhcCCCCC
Q 003890 242 AWVRVSIAYDSGKILDDIIKSVMPPSRVSVIIGEDYKLKKTILRD-YLTNKKYFIVLDDVFN-DSDIWDDLEQVLPDNQN 319 (788)
Q Consensus 242 ~wv~vs~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~-~l~~kr~LlVLDdvw~-~~~~~~~l~~~l~~~~~ 319 (788)
+++.......+. +..++...+.. -..+++-++|+|++.. +...++.+...+.....
T Consensus 91 ieidaas~~gvd----------------------~ir~ii~~~~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEepp~ 148 (546)
T PRK14957 91 IEIDAASRTGVE----------------------ETKEILDNIQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPE 148 (546)
T ss_pred EEeecccccCHH----------------------HHHHHHHHHHhhhhcCCcEEEEEechhhccHHHHHHHHHHHhcCCC
Confidence 333221111111 11122222221 1245677999999953 45677888888876655
Q ss_pred CcEEE-EecCChHHH
Q 003890 320 GSRVL-ITVTDLDLL 333 (788)
Q Consensus 320 gskIi-vTTR~~~v~ 333 (788)
.+++| +||....+.
T Consensus 149 ~v~fIL~Ttd~~kil 163 (546)
T PRK14957 149 YVKFILATTDYHKIP 163 (546)
T ss_pred CceEEEEECChhhhh
Confidence 66655 455444343
No 75
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.77 E-value=0.00015 Score=82.13 Aligned_cols=141 Identities=11% Similarity=0.063 Sum_probs=77.2
Q ss_pred CCCCCCcccchhcHHHHHHHHhcCCCCcEEEEEEcCCCChHHHHHHHHHcccCcccccceeEEEEeCCCCChHHHHHHHH
Q 003890 181 GQPRLDISEFERGREELFDLLIEGPSGLSVVAILNGSGFDKTAFAADTYNNNHIKFYFDCLAWVRVSIAYDSGKILDDII 260 (788)
Q Consensus 181 ~~~~~~~vGr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il 260 (788)
|..+.++||.+...+.+.+++..+. -...+-++|..|+||||+|+.+.+. +.. .-++.. ..++.-...+.+.
T Consensus 11 PktFddVIGQe~vv~~L~~aI~~gr-l~HAyLF~GPpGvGKTTlAriLAK~--LnC----~~~~~~-~pCg~C~sC~~I~ 82 (702)
T PRK14960 11 PRNFNELVGQNHVSRALSSALERGR-LHHAYLFTGTRGVGKTTIARILAKC--LNC----ETGVTS-TPCEVCATCKAVN 82 (702)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHH--hCC----CcCCCC-CCCccCHHHHHHh
Confidence 3344889999999999999997654 2467789999999999999988763 110 001100 0011111111111
Q ss_pred HHcCCCCCC-cccccCCHHHHHHHHHHH----hcCCcEEEEEeCCCC-ChhhHHHHhhhcCCCCCCcEEEEecCC
Q 003890 261 KSVMPPSRV-SVIIGEDYKLKKTILRDY----LTNKKYFIVLDDVFN-DSDIWDDLEQVLPDNQNGSRVLITVTD 329 (788)
Q Consensus 261 ~~l~~~~~~-~~~~~~~~~~~~~~l~~~----l~~kr~LlVLDdvw~-~~~~~~~l~~~l~~~~~gskIivTTR~ 329 (788)
..-...... ........+++.+.+... ..+++-++|+|+|.. +...++.+...+.....+.++|++|.+
T Consensus 83 ~g~hpDviEIDAAs~~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FILaTtd 157 (702)
T PRK14960 83 EGRFIDLIEIDAASRTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTD 157 (702)
T ss_pred cCCCCceEEecccccCCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEEEEEECC
Confidence 100000000 000011223322222211 235667899999963 456777788777665566777777765
No 76
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=97.74 E-value=0.00026 Score=75.96 Aligned_cols=131 Identities=15% Similarity=0.067 Sum_probs=75.0
Q ss_pred ccccCCCCCCCCcccchhcHHHHHHHHhcCCCCcEEEEEEcCCCChHHHHHHHHHcccCcccccceeEEEEe--CCCCCh
Q 003890 175 IRLLSEGQPRLDISEFERGREELFDLLIEGPSGLSVVAILNGSGFDKTAFAADTYNNNHIKFYFDCLAWVRV--SIAYDS 252 (788)
Q Consensus 175 ~~~~~~~~~~~~~vGr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v--s~~~~~ 252 (788)
|.....|..+.+++|++..++.+.+++..+. .+.+.++|.+|+||||+|+.+.+... ...+. ..++.+ +.....
T Consensus 7 w~~kyrP~~~~~~~g~~~~~~~l~~~i~~~~--~~~~ll~G~~G~GKt~~~~~l~~~l~-~~~~~-~~~i~~~~~~~~~~ 82 (319)
T PRK00440 7 WVEKYRPRTLDEIVGQEEIVERLKSYVKEKN--MPHLLFAGPPGTGKTTAALALARELY-GEDWR-ENFLELNASDERGI 82 (319)
T ss_pred cchhhCCCcHHHhcCcHHHHHHHHHHHhCCC--CCeEEEECCCCCCHHHHHHHHHHHHc-CCccc-cceEEeccccccch
Confidence 4444445555789999999999999987654 45578999999999999999988421 11121 122222 222121
Q ss_pred HHHHHHHHHHcCCCCCCcccccCCHHHHHHHHHHHhcCCcEEEEEeCCCC-ChhhHHHHhhhcCCCCCCcEEEEecC
Q 003890 253 GKILDDIIKSVMPPSRVSVIIGEDYKLKKTILRDYLTNKKYFIVLDDVFN-DSDIWDDLEQVLPDNQNGSRVLITVT 328 (788)
Q Consensus 253 ~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVLDdvw~-~~~~~~~l~~~l~~~~~gskIivTTR 328 (788)
. ..++.+..+..... .....+-++++|++.. .....+.+...+......+++|+++.
T Consensus 83 ~-~~~~~i~~~~~~~~------------------~~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~ 140 (319)
T PRK00440 83 D-VIRNKIKEFARTAP------------------VGGAPFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCN 140 (319)
T ss_pred H-HHHHHHHHHHhcCC------------------CCCCCceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeC
Confidence 1 11122111111100 0012456899999852 23445566666655455667777664
No 77
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.73 E-value=0.00011 Score=78.81 Aligned_cols=134 Identities=16% Similarity=0.185 Sum_probs=82.9
Q ss_pred hcCCccccEEEecCCCCCCCCccccCCCCccEEEecCC-CCcccChhhcCCCCCcEEEccCC-CCcccchhhhcccccce
Q 003890 544 CEKFKHLRILNLGSAVLVQFPPGLENLFHLKYLKLNIP-SLKCLPSLLCTLLNLQTLEMPSS-YVDQSPEDIWMMQKLMH 621 (788)
Q Consensus 544 ~~~l~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~-~i~~lp~~i~~L~~L~~L~L~~~-~l~~lp~~l~~L~~L~~ 621 (788)
+..+++++.|++++|.++.+|. + ..+|+.|.+++| .+..+|..+. .+|+.|++++| .+..+|.+ |+.
T Consensus 48 ~~~~~~l~~L~Is~c~L~sLP~-L--P~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~sLP~s------Le~ 116 (426)
T PRK15386 48 IEEARASGRLYIKDCDIESLPV-L--PNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEISGLPES------VRS 116 (426)
T ss_pred HHHhcCCCEEEeCCCCCcccCC-C--CCCCcEEEccCCCCcccCCchhh--hhhhheEccCcccccccccc------cce
Confidence 4556889999999999988882 2 346999999875 4777886663 58999999999 88888864 555
Q ss_pred eeccCccCCCCCcCCcCcc-ccccccccccccccCccccC-CC-CCCCeEEEEccCCcChhcHHHhccCCCCCCEEEeec
Q 003890 622 LNFGSITLPAPPKNYSSSL-KNLIFISTLNPSSCTPDILG-RL-PNVQTLRISGDLSCYHSGVSKSLCELHKLECLKLVN 698 (788)
Q Consensus 622 L~l~~~~~~~~i~~~~~~l-~~L~~L~~~~~~~~~~~~l~-~L-~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~L~~ 698 (788)
|++.++... .+ ..+ ++|+.|.+.+........+. .+ ++|+.|.+.+|. ...+|..+. .+|+.|+++.
T Consensus 117 L~L~~n~~~-~L----~~LPssLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~---~i~LP~~LP--~SLk~L~ls~ 186 (426)
T PRK15386 117 LEIKGSATD-SI----KNVPNGLTSLSINSYNPENQARIDNLISPSLKTLSLTGCS---NIILPEKLP--ESLQSITLHI 186 (426)
T ss_pred EEeCCCCCc-cc----ccCcchHhheeccccccccccccccccCCcccEEEecCCC---cccCccccc--ccCcEEEecc
Confidence 666544322 12 222 24555554321111111111 12 468888888876 222333332 4788888874
No 78
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=97.72 E-value=0.00021 Score=76.55 Aligned_cols=129 Identities=13% Similarity=0.084 Sum_probs=75.9
Q ss_pred ccccCCCCCCCCcccchhcHHHHHHHHhcCCCCcEEEEEEcCCCChHHHHHHHHHcccCcccccceeEEEEeCCCCChHH
Q 003890 175 IRLLSEGQPRLDISEFERGREELFDLLIEGPSGLSVVAILNGSGFDKTAFAADTYNNNHIKFYFDCLAWVRVSIAYDSGK 254 (788)
Q Consensus 175 ~~~~~~~~~~~~~vGr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~ 254 (788)
+.....|..+.+++|.+...+.+.+++..+. -..++-++|.+|+||||+|+.+++. .... ...++.+. ... .
T Consensus 11 w~~kyrP~~~~~~~~~~~~~~~l~~~~~~~~-~~~~lll~G~~G~GKT~la~~l~~~--~~~~---~~~i~~~~-~~~-~ 82 (316)
T PHA02544 11 WEQKYRPSTIDECILPAADKETFKSIVKKGR-IPNMLLHSPSPGTGKTTVAKALCNE--VGAE---VLFVNGSD-CRI-D 82 (316)
T ss_pred ceeccCCCcHHHhcCcHHHHHHHHHHHhcCC-CCeEEEeeCcCCCCHHHHHHHHHHH--hCcc---ceEeccCc-ccH-H
Confidence 3333444455889999999999999997643 3567777999999999999999883 3221 23444433 121 1
Q ss_pred HHHHHHHHcCCCCCCcccccCCHHHHHHHHHHHhcCCcEEEEEeCCCCC--hhhHHHHhhhcCCCCCCcEEEEecCCh
Q 003890 255 ILDDIIKSVMPPSRVSVIIGEDYKLKKTILRDYLTNKKYFIVLDDVFND--SDIWDDLEQVLPDNQNGSRVLITVTDL 330 (788)
Q Consensus 255 ~~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVLDdvw~~--~~~~~~l~~~l~~~~~gskIivTTR~~ 330 (788)
..++.+..+.... .+.+.+-++|+||+..- ....+.+...+.....++++|+||...
T Consensus 83 ~i~~~l~~~~~~~-------------------~~~~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~ 141 (316)
T PHA02544 83 FVRNRLTRFASTV-------------------SLTGGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNK 141 (316)
T ss_pred HHHHHHHHHHHhh-------------------cccCCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCCh
Confidence 1112111110000 01234557899999621 223334444444445677888888653
No 79
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.71 E-value=0.0002 Score=83.62 Aligned_cols=50 Identities=12% Similarity=-0.042 Sum_probs=40.7
Q ss_pred CCCCCCcccchhcHHHHHHHHhcCCCCcEEEEEEcCCCChHHHHHHHHHcc
Q 003890 181 GQPRLDISEFERGREELFDLLIEGPSGLSVVAILNGSGFDKTAFAADTYNN 231 (788)
Q Consensus 181 ~~~~~~~vGr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 231 (788)
+..|.++||-+..++.+.+++..+. -...+-++|..|+||||+|+.+++.
T Consensus 12 P~tFddIIGQe~Iv~~LknaI~~~r-l~HAyLFtGPpGtGKTTLARiLAk~ 61 (944)
T PRK14949 12 PATFEQMVGQSHVLHALTNALTQQR-LHHAYLFTGTRGVGKTSLARLFAKG 61 (944)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHhCC-CCeEEEEECCCCCCHHHHHHHHHHh
Confidence 3445889999999999999987653 2345679999999999999999973
No 80
>PLN03025 replication factor C subunit; Provisional
Probab=97.69 E-value=0.00021 Score=76.44 Aligned_cols=132 Identities=13% Similarity=0.073 Sum_probs=72.9
Q ss_pred ccCCCCCCCCcccchhcHHHHHHHHhcCCCCcEEEEEEcCCCChHHHHHHHHHcccCcccccce-eEEEEeCCCCChHHH
Q 003890 177 LLSEGQPRLDISEFERGREELFDLLIEGPSGLSVVAILNGSGFDKTAFAADTYNNNHIKFYFDC-LAWVRVSIAYDSGKI 255 (788)
Q Consensus 177 ~~~~~~~~~~~vGr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~-~~wv~vs~~~~~~~~ 255 (788)
....|..+.+++|-+..++.+.+++..+. .+-+-++|++|+||||+|+.+++.. ....|.. ++-++.+...... .
T Consensus 5 ~kyrP~~l~~~~g~~~~~~~L~~~~~~~~--~~~lll~Gp~G~GKTtla~~la~~l-~~~~~~~~~~eln~sd~~~~~-~ 80 (319)
T PLN03025 5 EKYRPTKLDDIVGNEDAVSRLQVIARDGN--MPNLILSGPPGTGKTTSILALAHEL-LGPNYKEAVLELNASDDRGID-V 80 (319)
T ss_pred hhcCCCCHHHhcCcHHHHHHHHHHHhcCC--CceEEEECCCCCCHHHHHHHHHHHH-hcccCccceeeecccccccHH-H
Confidence 33344445789999988888888776544 4456799999999999999998731 1222321 2222223222222 2
Q ss_pred HHHHHHHcCCCCCCcccccCCHHHHHHHHHHHhcCCcEEEEEeCCCC-ChhhHHHHhhhcCCCCCCcEEEEecCC
Q 003890 256 LDDIIKSVMPPSRVSVIIGEDYKLKKTILRDYLTNKKYFIVLDDVFN-DSDIWDDLEQVLPDNQNGSRVLITVTD 329 (788)
Q Consensus 256 ~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVLDdvw~-~~~~~~~l~~~l~~~~~gskIivTTR~ 329 (788)
.+++++.+..... . .-.++.-++|+|++.. .....+.+...+......+++|+++..
T Consensus 81 vr~~i~~~~~~~~-----~------------~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~ 138 (319)
T PLN03025 81 VRNKIKMFAQKKV-----T------------LPPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNT 138 (319)
T ss_pred HHHHHHHHHhccc-----c------------CCCCCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCC
Confidence 2222222111100 0 0024566899999962 334445555555443445677776643
No 81
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.67 E-value=3.6e-05 Score=89.61 Aligned_cols=129 Identities=16% Similarity=0.209 Sum_probs=94.6
Q ss_pred CCceeEEEeecCcc---cccc--ccccccccceEEecCCCCc-hhhhhhhhhhhcCCccccEEEecCCCCCCCCccccCC
Q 003890 497 PANVKWCYIMKDLI---EFFS--LEHSDIYLQSFLNHSSESD-HLALIDCENFCEKFKHLRILNLGSAVLVQFPPGLENL 570 (788)
Q Consensus 497 ~~~~r~Ls~~~~~~---~~~~--~~~~~~~Lr~L~l~~~~~~-~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~i~~L 570 (788)
..++++|.+.+... .++. ... +|.|++|.+.+-... ..+ ...+.++++|+.||+++++++.+ ..+++|
T Consensus 121 r~nL~~LdI~G~~~~s~~W~~kig~~-LPsL~sL~i~~~~~~~~dF----~~lc~sFpNL~sLDIS~TnI~nl-~GIS~L 194 (699)
T KOG3665|consen 121 RQNLQHLDISGSELFSNGWPKKIGTM-LPSLRSLVISGRQFDNDDF----SQLCASFPNLRSLDISGTNISNL-SGISRL 194 (699)
T ss_pred HHhhhhcCccccchhhccHHHHHhhh-CcccceEEecCceecchhH----HHHhhccCccceeecCCCCccCc-HHHhcc
Confidence 34567777765321 1111 445 999999999987753 223 26788999999999999999988 789999
Q ss_pred CCccEEEecCCCCcccC--hhhcCCCCCcEEEccCCCCcccchh-------hhcccccceeeccCccCCC
Q 003890 571 FHLKYLKLNIPSLKCLP--SLLCTLLNLQTLEMPSSYVDQSPED-------IWMMQKLMHLNFGSITLPA 631 (788)
Q Consensus 571 ~~L~~L~L~~~~i~~lp--~~i~~L~~L~~L~L~~~~l~~lp~~-------l~~L~~L~~L~l~~~~~~~ 631 (788)
++|+.|.+.+-.+..-+ ..+.+|++|++||+|.......+.- -..||+||.||.+++.+..
T Consensus 195 knLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~ 264 (699)
T KOG3665|consen 195 KNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINE 264 (699)
T ss_pred ccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhH
Confidence 99999999987766432 4678999999999998733322221 1348999999999875543
No 82
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=97.64 E-value=0.00039 Score=78.00 Aligned_cols=151 Identities=10% Similarity=-0.010 Sum_probs=81.2
Q ss_pred CCCCCCCcccchhcHHHHHHHHhcCCCCcEEEEEEcCCCChHHHHHHHHHcccCcccccce-eEEEEeCCCCChHHHHHH
Q 003890 180 EGQPRLDISEFERGREELFDLLIEGPSGLSVVAILNGSGFDKTAFAADTYNNNHIKFYFDC-LAWVRVSIAYDSGKILDD 258 (788)
Q Consensus 180 ~~~~~~~~vGr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~-~~wv~vs~~~~~~~~~~~ 258 (788)
.|..+.+++|-+..+..+...+..+. -...+-++|..|+||||+|+.+++.---...+.. -.+.. +..-.....
T Consensus 16 RP~~f~dliGq~~vv~~L~~ai~~~r-i~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~----C~~C~~C~~ 90 (507)
T PRK06645 16 RPSNFAELQGQEVLVKVLSYTILNDR-LAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKT----CEQCTNCIS 90 (507)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCC----CCCChHHHH
Confidence 34455889999999998888776653 3457789999999999999999873211110000 00000 000001111
Q ss_pred HHHHcCCCCCC-cccccCCHHHHHHHHHHH----hcCCcEEEEEeCCCC-ChhhHHHHhhhcCCCCCCcEEE-EecCChH
Q 003890 259 IIKSVMPPSRV-SVIIGEDYKLKKTILRDY----LTNKKYFIVLDDVFN-DSDIWDDLEQVLPDNQNGSRVL-ITVTDLD 331 (788)
Q Consensus 259 il~~l~~~~~~-~~~~~~~~~~~~~~l~~~----l~~kr~LlVLDdvw~-~~~~~~~l~~~l~~~~~gskIi-vTTR~~~ 331 (788)
+.........+ +.......+++...+... +.+++-++|+|+++. +...|+.+...+....+.+++| +||+...
T Consensus 91 i~~~~h~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~vfI~aTte~~k 170 (507)
T PRK06645 91 FNNHNHPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFATTEVQK 170 (507)
T ss_pred HhcCCCCcEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCEEEEEEeCChHH
Confidence 11100000000 000112233333333222 245777999999973 4577888888887666666765 4555555
Q ss_pred HHhh
Q 003890 332 LLES 335 (788)
Q Consensus 332 v~~~ 335 (788)
+...
T Consensus 171 I~~t 174 (507)
T PRK06645 171 IPAT 174 (507)
T ss_pred hhHH
Confidence 5443
No 83
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=97.64 E-value=0.00015 Score=78.77 Aligned_cols=69 Identities=14% Similarity=0.021 Sum_probs=56.8
Q ss_pred CCcccchhcHHHHHHHHhcCCCCcEEEEEEcCCCChHHHHHHHHHcccCcccccceeEEEEeCCCCChHHHHH
Q 003890 185 LDISEFERGREELFDLLIEGPSGLSVVAILNGSGFDKTAFAADTYNNNHIKFYFDCLAWVRVSIAYDSGKILD 257 (788)
Q Consensus 185 ~~~vGr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~ 257 (788)
.++++.+...+.+...|... +.|.++|++|+|||++|+.+++.......|+.+.||.+++.++..++..
T Consensus 175 ~d~~i~e~~le~l~~~L~~~----~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~ 243 (459)
T PRK11331 175 NDLFIPETTIETILKRLTIK----KNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQ 243 (459)
T ss_pred hcccCCHHHHHHHHHHHhcC----CCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhc
Confidence 66888999999999998753 4677899999999999999998544455778899999999988666553
No 84
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=97.64 E-value=0.00025 Score=73.70 Aligned_cols=112 Identities=19% Similarity=0.209 Sum_probs=79.0
Q ss_pred CCcccchhcHHHHHHHHhcCCCC-cEEEEEEcCCCChHHHHHHHHHcccCcccccceeEEEEeCCCCChHHHHHHHHHHc
Q 003890 185 LDISEFERGREELFDLLIEGPSG-LSVVAILNGSGFDKTAFAADTYNNNHIKFYFDCLAWVRVSIAYDSGKILDDIIKSV 263 (788)
Q Consensus 185 ~~~vGr~~~~~~i~~~L~~~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~~l 263 (788)
+.+.+|+..+..+...+...+.. ...|-|+|..|.|||.+.+.+.+.. .. ..+|+++-+.|+..-++..|+.+.
T Consensus 6 ~~v~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~--n~---~~vw~n~~ecft~~~lle~IL~~~ 80 (438)
T KOG2543|consen 6 PNVPCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKL--NL---ENVWLNCVECFTYAILLEKILNKS 80 (438)
T ss_pred cCccchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhc--CC---cceeeehHHhccHHHHHHHHHHHh
Confidence 46889999999999988776643 4455899999999999999999943 22 258999999999999999999999
Q ss_pred CCCCCCcccccCCHHHHH---HHHHH--Hhc--CCcEEEEEeCCC
Q 003890 264 MPPSRVSVIIGEDYKLKK---TILRD--YLT--NKKYFIVLDDVF 301 (788)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~---~~l~~--~l~--~kr~LlVLDdvw 301 (788)
............+.+... ..+.+ ... ++.++||||++.
T Consensus 81 ~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad 125 (438)
T KOG2543|consen 81 QLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNAD 125 (438)
T ss_pred ccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHH
Confidence 632221000011112222 22222 111 468999999996
No 85
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=97.63 E-value=0.00015 Score=84.76 Aligned_cols=54 Identities=15% Similarity=0.097 Sum_probs=39.2
Q ss_pred CCCCCCcccchhcHH---HHHHHHhcCCCCcEEEEEEcCCCChHHHHHHHHHcccCccccc
Q 003890 181 GQPRLDISEFERGRE---ELFDLLIEGPSGLSVVAILNGSGFDKTAFAADTYNNNHIKFYF 238 (788)
Q Consensus 181 ~~~~~~~vGr~~~~~---~i~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F 238 (788)
+..+.+++|.+..+. .+...+..+ ....+.++|++|+||||||+.+++ .....|
T Consensus 24 P~tldd~vGQe~ii~~~~~L~~~i~~~--~~~slLL~GPpGtGKTTLA~aIA~--~~~~~f 80 (725)
T PRK13341 24 PRTLEEFVGQDHILGEGRLLRRAIKAD--RVGSLILYGPPGVGKTTLARIIAN--HTRAHF 80 (725)
T ss_pred CCcHHHhcCcHHHhhhhHHHHHHHhcC--CCceEEEECCCCCCHHHHHHHHHH--HhcCcc
Confidence 344478999888774 455555543 356678999999999999999998 444444
No 86
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.63 E-value=0.00035 Score=78.95 Aligned_cols=150 Identities=8% Similarity=-0.007 Sum_probs=78.4
Q ss_pred CCCCCCcccchhcHHHHHHHHhcCCCCcEEEEEEcCCCChHHHHHHHHHcccCcccccceeEEEEeCCCCChHHHHHHHH
Q 003890 181 GQPRLDISEFERGREELFDLLIEGPSGLSVVAILNGSGFDKTAFAADTYNNNHIKFYFDCLAWVRVSIAYDSGKILDDII 260 (788)
Q Consensus 181 ~~~~~~~vGr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il 260 (788)
+..|.++||-+..++.|.+++..+. -...+-++|..|+||||+|+.+.+..--...-.... + .+..+..-...+.|.
T Consensus 12 PqtFddVIGQe~vv~~L~~al~~gR-LpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g-~-~~~PCG~C~sC~~I~ 88 (700)
T PRK12323 12 PRDFTTLVGQEHVVRALTHALEQQR-LHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGG-I-TAQPCGQCRACTEID 88 (700)
T ss_pred CCcHHHHcCcHHHHHHHHHHHHhCC-CceEEEEECCCCCCHHHHHHHHHHHhcCCCcccccc-C-CCCCCcccHHHHHHH
Confidence 3444889999999999999997654 245668899999999999998876311100000000 0 000011111111111
Q ss_pred HHcCCCCCC-cccccCCHHHHHHHHHHHh----cCCcEEEEEeCCCC-ChhhHHHHhhhcCCCCCCcEEE-EecCChHHH
Q 003890 261 KSVMPPSRV-SVIIGEDYKLKKTILRDYL----TNKKYFIVLDDVFN-DSDIWDDLEQVLPDNQNGSRVL-ITVTDLDLL 333 (788)
Q Consensus 261 ~~l~~~~~~-~~~~~~~~~~~~~~l~~~l----~~kr~LlVLDdvw~-~~~~~~~l~~~l~~~~~gskIi-vTTR~~~v~ 333 (788)
..-.....+ +.......+++.+.+.+.. .++.-++|+|++.. +...++.|...+..-..+.++| +||....+.
T Consensus 89 aG~hpDviEIdAas~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~v~FILaTtep~kLl 168 (700)
T PRK12323 89 AGRFVDYIEMDAASNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTDPQKIP 168 (700)
T ss_pred cCCCCcceEecccccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhccCCCCceEEEEeCChHhhh
Confidence 100000000 0001122333333333221 35666899999963 4567888888876655566654 555445444
No 87
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.63 E-value=0.00036 Score=78.75 Aligned_cols=127 Identities=11% Similarity=0.040 Sum_probs=77.0
Q ss_pred CCCCCCcccchhcHHHHHHHHhcCCCCcEEEEEEcCCCChHHHHHHHHHcccCcc-------------------ccccee
Q 003890 181 GQPRLDISEFERGREELFDLLIEGPSGLSVVAILNGSGFDKTAFAADTYNNNHIK-------------------FYFDCL 241 (788)
Q Consensus 181 ~~~~~~~vGr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-------------------~~F~~~ 241 (788)
|..|.++||-+..++.+.+++..+. -...+-++|+.|+||||+|+.+...---. +.|..+
T Consensus 12 P~~f~divGq~~v~~~L~~~~~~~~-l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~~~d~ 90 (509)
T PRK14958 12 PRCFQEVIGQAPVVRALSNALDQQY-LHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGRFPDL 90 (509)
T ss_pred CCCHHHhcCCHHHHHHHHHHHHhCC-CCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCCCceE
Confidence 4445889999999999999997654 24467799999999999998887631110 122223
Q ss_pred EEEEeCCCCChHHHHHHHHHHcCCCCCCcccccCCHHHHHHHHHHHhcCCcEEEEEeCCCC-ChhhHHHHhhhcCCCCCC
Q 003890 242 AWVRVSIAYDSGKILDDIIKSVMPPSRVSVIIGEDYKLKKTILRDYLTNKKYFIVLDDVFN-DSDIWDDLEQVLPDNQNG 320 (788)
Q Consensus 242 ~wv~vs~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVLDdvw~-~~~~~~~l~~~l~~~~~g 320 (788)
+.+..+....++.+ +++++.+... -..++.-++|+|+|.. +...++.+...+......
T Consensus 91 ~eidaas~~~v~~i-R~l~~~~~~~--------------------p~~~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~ 149 (509)
T PRK14958 91 FEVDAASRTKVEDT-RELLDNIPYA--------------------PTKGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSH 149 (509)
T ss_pred EEEcccccCCHHHH-HHHHHHHhhc--------------------cccCCcEEEEEEChHhcCHHHHHHHHHHHhccCCC
Confidence 33332222222221 2222221111 1135666899999963 456778888877766667
Q ss_pred cEEEEecCC
Q 003890 321 SRVLITVTD 329 (788)
Q Consensus 321 skIivTTR~ 329 (788)
+++|++|.+
T Consensus 150 ~~fIlattd 158 (509)
T PRK14958 150 VKFILATTD 158 (509)
T ss_pred eEEEEEECC
Confidence 776665543
No 88
>PRK04195 replication factor C large subunit; Provisional
Probab=97.62 E-value=0.00025 Score=80.37 Aligned_cols=123 Identities=12% Similarity=0.196 Sum_probs=73.3
Q ss_pred CCCCCCCcccchhcHHHHHHHHhcC--CCCcEEEEEEcCCCChHHHHHHHHHcccCcccccceeEEEEeCCCCChHHHHH
Q 003890 180 EGQPRLDISEFERGREELFDLLIEG--PSGLSVVAILNGSGFDKTAFAADTYNNNHIKFYFDCLAWVRVSIAYDSGKILD 257 (788)
Q Consensus 180 ~~~~~~~~vGr~~~~~~i~~~L~~~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~ 257 (788)
.|..+.+++|.+..++.+.+|+..- ....+.+-|+|++|+||||+|+.+++. .. |+ .+-++.+...+. ....
T Consensus 9 rP~~l~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~e--l~--~~-~ielnasd~r~~-~~i~ 82 (482)
T PRK04195 9 RPKTLSDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALAND--YG--WE-VIELNASDQRTA-DVIE 82 (482)
T ss_pred CCCCHHHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHH--cC--CC-EEEEcccccccH-HHHH
Confidence 3344478999999999999998642 223678899999999999999999994 32 22 333344443222 2333
Q ss_pred HHHHHcCCCCCCcccccCCHHHHHHHHHHHhcCCcEEEEEeCCCC-Ch----hhHHHHhhhcCCCCCCcEEEEecC
Q 003890 258 DIIKSVMPPSRVSVIIGEDYKLKKTILRDYLTNKKYFIVLDDVFN-DS----DIWDDLEQVLPDNQNGSRVLITVT 328 (788)
Q Consensus 258 ~il~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVLDdvw~-~~----~~~~~l~~~l~~~~~gskIivTTR 328 (788)
.++........ .+..++-+||+|++.. .. ..+..+...+.. .+..||+|+.
T Consensus 83 ~~i~~~~~~~s------------------l~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~~--~~~~iIli~n 138 (482)
T PRK04195 83 RVAGEAATSGS------------------LFGARRKLILLDEVDGIHGNEDRGGARAILELIKK--AKQPIILTAN 138 (482)
T ss_pred HHHHHhhccCc------------------ccCCCCeEEEEecCcccccccchhHHHHHHHHHHc--CCCCEEEecc
Confidence 33333221110 0113678999999962 11 235555555542 2344666654
No 89
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.61 E-value=2.4e-05 Score=78.17 Aligned_cols=205 Identities=16% Similarity=0.116 Sum_probs=96.7
Q ss_pred CCccccEEEecCCCCC---CCCccccCCCCccEEEecCCCCcccChhh-cCCCCCcEEEccCCC--Ccccchhhhccccc
Q 003890 546 KFKHLRILNLGSAVLV---QFPPGLENLFHLKYLKLNIPSLKCLPSLL-CTLLNLQTLEMPSSY--VDQSPEDIWMMQKL 619 (788)
Q Consensus 546 ~l~~L~~L~L~~~~l~---~lp~~i~~L~~L~~L~L~~~~i~~lp~~i-~~L~~L~~L~L~~~~--l~~lp~~l~~L~~L 619 (788)
....++.|||.+|.|+ ++..-+.+|++|++|+++.|++...-.++ ..+.+|++|-|.|+. .......+..+|.+
T Consensus 69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~v 148 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKV 148 (418)
T ss_pred HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhh
Confidence 4556666666666665 33333455666677777666644322222 345566676666662 33344445666666
Q ss_pred ceeeccCccCCCCCcCCcCcccccccccccc-ccccCccccCCCCCCCeEEEEccCCcChhcHHHhccCCCCCCEEEeec
Q 003890 620 MHLNFGSITLPAPPKNYSSSLKNLIFISTLN-PSSCTPDILGRLPNVQTLRISGDLSCYHSGVSKSLCELHKLECLKLVN 698 (788)
Q Consensus 620 ~~L~l~~~~~~~~i~~~~~~l~~L~~L~~~~-~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~L~~ 698 (788)
+.|+++.|+... +.+.+ +... --+.++.|+...|..........--.-++++..+.+..
T Consensus 149 telHmS~N~~rq--------------~n~Dd~c~e~------~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e 208 (418)
T KOG2982|consen 149 TELHMSDNSLRQ--------------LNLDDNCIED------WSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCE 208 (418)
T ss_pred hhhhhccchhhh--------------hccccccccc------cchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeec
Confidence 666665442221 11110 0000 01123333333332000000001112245666666653
Q ss_pred CCCCCcccccccCCCccccccc---ccccccccc--CcccCCCCCcceEEEeccccccccccCC--cccccccccCCeeE
Q 003890 699 ERKPSRMVLYEYQFPPTDMARI---LSQLIRQEF--VESEMSLPLLQLLDLEESDEEDDERSDI--LEILQDINDFVHES 771 (788)
Q Consensus 699 ~~~~~~~~~~~~l~~~~~L~~L---~~~l~~~~l--p~~l~~l~~L~~L~L~~~~l~~~~~~~~--l~~l~~L~~L~~L~ 771 (788)
+..-+. ..-.+..+++.+-.| .+++ .+. -..+..++.|..|.++++++.+...|.. .-.++.|++++.|+
T Consensus 209 ~PlK~~-s~ek~se~~p~~~~LnL~~~~i--dswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLN 285 (418)
T KOG2982|consen 209 GPLKTE-SSEKGSEPFPSLSCLNLGANNI--DSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLN 285 (418)
T ss_pred Ccccch-hhcccCCCCCcchhhhhccccc--ccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeeccceEEec
Confidence 322110 122233334444444 3344 211 1134568999999999999876311111 11357889998887
Q ss_pred ec
Q 003890 772 EE 773 (788)
Q Consensus 772 L~ 773 (788)
=+
T Consensus 286 Gs 287 (418)
T KOG2982|consen 286 GS 287 (418)
T ss_pred Cc
Confidence 54
No 90
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.61 E-value=0.00026 Score=76.12 Aligned_cols=56 Identities=16% Similarity=0.160 Sum_probs=45.3
Q ss_pred ccCCCCccEEEecCCCCcccChhhcCCCCCcEEEccCC-CCcccchhhhcccccceeeccCc
Q 003890 567 LENLFHLKYLKLNIPSLKCLPSLLCTLLNLQTLEMPSS-YVDQSPEDIWMMQKLMHLNFGSI 627 (788)
Q Consensus 567 i~~L~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~-~l~~lp~~l~~L~~L~~L~l~~~ 627 (788)
+..+.++++|++++|.+..+|. -..+|++|.+++| .+..+|..+ .++|++|++++|
T Consensus 48 ~~~~~~l~~L~Is~c~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~C 104 (426)
T PRK15386 48 IEEARASGRLYIKDCDIESLPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHC 104 (426)
T ss_pred HHHhcCCCEEEeCCCCCcccCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCc
Confidence 4457889999999999999982 2347999999998 788888755 358999999887
No 91
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.59 E-value=0.00041 Score=78.14 Aligned_cols=138 Identities=13% Similarity=0.007 Sum_probs=76.8
Q ss_pred CCCCCcccchhcHHHHHHHHhcCCCCcEEEEEEcCCCChHHHHHHHHHcccCcccccceeEEEEeCCCCChHHHHHHHHH
Q 003890 182 QPRLDISEFERGREELFDLLIEGPSGLSVVAILNGSGFDKTAFAADTYNNNHIKFYFDCLAWVRVSIAYDSGKILDDIIK 261 (788)
Q Consensus 182 ~~~~~~vGr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~ 261 (788)
..+.+++|-+..++.+.+++..+. -...+-++|++|+||||+|+.+++.....+.++..+|.|.+... +......-+.
T Consensus 11 ~~~~dvvGq~~v~~~L~~~i~~~~-l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~~-i~~~~h~dv~ 88 (504)
T PRK14963 11 ITFDEVVGQEHVKEVLLAALRQGR-LGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCLA-VRRGAHPDVL 88 (504)
T ss_pred CCHHHhcChHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhHH-HhcCCCCceE
Confidence 334789999999999988887654 34567899999999999999988743222223334444322110 0000000000
Q ss_pred HcCCCCCCcccccCCHHHHHHHHHHH-----hcCCcEEEEEeCCCC-ChhhHHHHhhhcCCCCCCcEEEEecC
Q 003890 262 SVMPPSRVSVIIGEDYKLKKTILRDY-----LTNKKYFIVLDDVFN-DSDIWDDLEQVLPDNQNGSRVLITVT 328 (788)
Q Consensus 262 ~l~~~~~~~~~~~~~~~~~~~~l~~~-----l~~kr~LlVLDdvw~-~~~~~~~l~~~l~~~~~gskIivTTR 328 (788)
.+... .....+.+.+ +.+. +.+++-++|+|+++. ....++.+...+........+|++|.
T Consensus 89 el~~~------~~~~vd~iR~-l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~ 154 (504)
T PRK14963 89 EIDAA------SNNSVEDVRD-LREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATT 154 (504)
T ss_pred Eeccc------ccCCHHHHHH-HHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcC
Confidence 00000 0112222222 2222 235667999999973 34667888887766555556555554
No 92
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.53 E-value=0.00078 Score=76.62 Aligned_cols=48 Identities=15% Similarity=0.012 Sum_probs=39.3
Q ss_pred CCCCCcccchhcHHHHHHHHhcCCCCcEEEEEEcCCCChHHHHHHHHHc
Q 003890 182 QPRLDISEFERGREELFDLLIEGPSGLSVVAILNGSGFDKTAFAADTYN 230 (788)
Q Consensus 182 ~~~~~~vGr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 230 (788)
..|.+++|-+..++.+.+++..+. -...+-++|..|+||||+|+.+..
T Consensus 13 ~~f~divGq~~v~~~L~~~i~~~~-~~ha~Lf~Gp~G~GKTt~A~~lAk 60 (527)
T PRK14969 13 KSFSELVGQEHVVRALTNALEQQR-LHHAYLFTGTRGVGKTTLARILAK 60 (527)
T ss_pred CcHHHhcCcHHHHHHHHHHHHcCC-CCEEEEEECCCCCCHHHHHHHHHH
Confidence 344789999999999999887654 235567899999999999999876
No 93
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.53 E-value=2.4e-05 Score=90.96 Aligned_cols=15 Identities=33% Similarity=0.346 Sum_probs=9.6
Q ss_pred CCCCCCCeEEEEccC
Q 003890 660 GRLPNVQTLRISGDL 674 (788)
Q Consensus 660 ~~L~~L~~L~l~~~~ 674 (788)
..||+|+.|+.++..
T Consensus 247 ~~LpeLrfLDcSgTd 261 (699)
T KOG3665|consen 247 MVLPELRFLDCSGTD 261 (699)
T ss_pred ccCccccEEecCCcc
Confidence 346677777777654
No 94
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.52 E-value=0.00063 Score=75.75 Aligned_cols=132 Identities=10% Similarity=0.023 Sum_probs=78.3
Q ss_pred CCCCCCcccchhcHHHHHHHHhcCCCCcEEEEEEcCCCChHHHHHHHHHccc------Cc-------------cccccee
Q 003890 181 GQPRLDISEFERGREELFDLLIEGPSGLSVVAILNGSGFDKTAFAADTYNNN------HI-------------KFYFDCL 241 (788)
Q Consensus 181 ~~~~~~~vGr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~------~~-------------~~~F~~~ 241 (788)
|..|.++||-+..++.+.+.+..+. -...+-++|..|+||||+|+.+..-- .. .+.+..+
T Consensus 9 P~~f~dliGQe~vv~~L~~a~~~~r-i~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~Dv 87 (491)
T PRK14964 9 PSSFKDLVGQDVLVRILRNAFTLNK-IPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPDV 87 (491)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCC-CCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCCE
Confidence 3445889999998888888887654 23478899999999999998887510 00 0112223
Q ss_pred EEEEeCCCCChHHHHHHHHHHcCCCCCCcccccCCHHHHHHHHHHHhcCCcEEEEEeCCCC-ChhhHHHHhhhcCCCCCC
Q 003890 242 AWVRVSIAYDSGKILDDIIKSVMPPSRVSVIIGEDYKLKKTILRDYLTNKKYFIVLDDVFN-DSDIWDDLEQVLPDNQNG 320 (788)
Q Consensus 242 ~wv~vs~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVLDdvw~-~~~~~~~l~~~l~~~~~g 320 (788)
+.++.+....+.+ .+++++..... -+.+++-++|+|++.. +...++.+...+....+.
T Consensus 88 ~eidaas~~~vdd-IR~Iie~~~~~--------------------P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~ 146 (491)
T PRK14964 88 IEIDAASNTSVDD-IKVILENSCYL--------------------PISSKFKVYIIDEVHMLSNSAFNALLKTLEEPAPH 146 (491)
T ss_pred EEEecccCCCHHH-HHHHHHHHHhc--------------------cccCCceEEEEeChHhCCHHHHHHHHHHHhCCCCC
Confidence 3443332222222 11222221100 0135666899999953 456778888888766667
Q ss_pred cEEEEec-CChHHHh
Q 003890 321 SRVLITV-TDLDLLE 334 (788)
Q Consensus 321 skIivTT-R~~~v~~ 334 (788)
+++|++| ....+..
T Consensus 147 v~fIlatte~~Kl~~ 161 (491)
T PRK14964 147 VKFILATTEVKKIPV 161 (491)
T ss_pred eEEEEEeCChHHHHH
Confidence 7766555 4444443
No 95
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.51 E-value=0.00064 Score=62.65 Aligned_cols=86 Identities=10% Similarity=0.009 Sum_probs=48.2
Q ss_pred cEEEEEEcCCCChHHHHHHHHHcccCcccccceeEEEEeCCCCChHHHHHHHHHHcCCCCCCcccccCCHHHHHHHHHHH
Q 003890 208 LSVVAILNGSGFDKTAFAADTYNNNHIKFYFDCLAWVRVSIAYDSGKILDDIIKSVMPPSRVSVIIGEDYKLKKTILRDY 287 (788)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~~ 287 (788)
...+.|+|.+|+||||+|+.+.. ........++++..+........... ........ ...........+.+.
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~----~~~~~~~~~~~~~~~ 73 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALAR--ELGPPGGGVIYIDGEDILEEVLDQLL--LIIVGGKK----ASGSGELRLRLALAL 73 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHh--ccCCCCCCEEEECCEEccccCHHHHH--hhhhhccC----CCCCHHHHHHHHHHH
Confidence 35789999999999999999998 34433333566655544332222221 11111111 122223333344444
Q ss_pred hcCC-cEEEEEeCCC
Q 003890 288 LTNK-KYFIVLDDVF 301 (788)
Q Consensus 288 l~~k-r~LlVLDdvw 301 (788)
.+.. ..++++|++.
T Consensus 74 ~~~~~~~viiiDei~ 88 (148)
T smart00382 74 ARKLKPDVLILDEIT 88 (148)
T ss_pred HHhcCCCEEEEECCc
Confidence 4443 4899999997
No 96
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=97.51 E-value=0.0006 Score=78.01 Aligned_cols=49 Identities=20% Similarity=0.084 Sum_probs=40.6
Q ss_pred CCCCCCcccchhcHHHHHHHHhcCCCCcEEEEEEcCCCChHHHHHHHHHc
Q 003890 181 GQPRLDISEFERGREELFDLLIEGPSGLSVVAILNGSGFDKTAFAADTYN 230 (788)
Q Consensus 181 ~~~~~~~vGr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 230 (788)
+..|.++||.+..+..|.+++..+. -...+-++|..|+||||+|+.+..
T Consensus 12 P~tFddIIGQe~vv~~L~~ai~~~r-l~Ha~Lf~GP~GvGKTTlAriLAk 60 (709)
T PRK08691 12 PKTFADLVGQEHVVKALQNALDEGR-LHHAYLLTGTRGVGKTTIARILAK 60 (709)
T ss_pred CCCHHHHcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCcHHHHHHHHHH
Confidence 3344889999999999999988653 245678999999999999998876
No 97
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.50 E-value=0.00068 Score=75.74 Aligned_cols=50 Identities=10% Similarity=0.021 Sum_probs=39.5
Q ss_pred CCCCCCcccchhcHHHHHHHHhcCCCCcEEEEEEcCCCChHHHHHHHHHcc
Q 003890 181 GQPRLDISEFERGREELFDLLIEGPSGLSVVAILNGSGFDKTAFAADTYNN 231 (788)
Q Consensus 181 ~~~~~~~vGr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 231 (788)
|..+.++||.+.....+...+..+. -...+-++|++|+||||+|+.+.+.
T Consensus 10 P~~~~divGq~~i~~~L~~~i~~~~-l~~~~Lf~GPpGtGKTTlA~~lA~~ 59 (472)
T PRK14962 10 PKTFSEVVGQDHVKKLIINALKKNS-ISHAYIFAGPRGTGKTTVARILAKS 59 (472)
T ss_pred CCCHHHccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3444889999888888888776554 2356789999999999999999873
No 98
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=97.49 E-value=0.0005 Score=78.88 Aligned_cols=145 Identities=13% Similarity=0.061 Sum_probs=78.1
Q ss_pred CCCCCCcccchhcHHHHHHHHhcCCCCcEEEEEEcCCCChHHHHHHHHHcccCcccccceeEEEEeCCCCChHHHHHHHH
Q 003890 181 GQPRLDISEFERGREELFDLLIEGPSGLSVVAILNGSGFDKTAFAADTYNNNHIKFYFDCLAWVRVSIAYDSGKILDDII 260 (788)
Q Consensus 181 ~~~~~~~vGr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il 260 (788)
+..|.++||-+..++.+.+.+..+. -...+-++|..|+||||+|+.+... +.... .. .+..+..-...+.|.
T Consensus 12 P~~f~divGQe~vv~~L~~~l~~~r-l~hAyLf~Gp~GvGKTTlAr~lAk~--L~c~~----~~-~~~pCg~C~~C~~i~ 83 (647)
T PRK07994 12 PQTFAEVVGQEHVLTALANALDLGR-LHHAYLFSGTRGVGKTTIARLLAKG--LNCET----GI-TATPCGECDNCREIE 83 (647)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHh--hhhcc----CC-CCCCCCCCHHHHHHH
Confidence 3445889999999999998887654 2345678999999999999998873 21100 00 001111112222222
Q ss_pred HHcCCCCCCccc-ccCCHHHHHHHHHHH----hcCCcEEEEEeCCCC-ChhhHHHHhhhcCCCCCCcEEEEecCC-hHHH
Q 003890 261 KSVMPPSRVSVI-IGEDYKLKKTILRDY----LTNKKYFIVLDDVFN-DSDIWDDLEQVLPDNQNGSRVLITVTD-LDLL 333 (788)
Q Consensus 261 ~~l~~~~~~~~~-~~~~~~~~~~~l~~~----l~~kr~LlVLDdvw~-~~~~~~~l~~~l~~~~~gskIivTTR~-~~v~ 333 (788)
..-......... .....+++.+.+.+. ..+++-++|+|++.. +...++.+...+-......++|.+|.+ ..+.
T Consensus 84 ~g~~~D~ieidaas~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~~~kLl 163 (647)
T PRK07994 84 QGRFVDLIEIDAASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLP 163 (647)
T ss_pred cCCCCCceeecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecCCccccc
Confidence 110000000000 011223332222211 246777999999963 456778888777665556665554444 4443
No 99
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.49 E-value=0.00066 Score=77.73 Aligned_cols=148 Identities=8% Similarity=0.009 Sum_probs=76.6
Q ss_pred CCCCCCcccchhcHHHHHHHHhcCCCCcEEEEEEcCCCChHHHHHHHHHcccCccccc--ceeEEEEeCCCCChHHHHHH
Q 003890 181 GQPRLDISEFERGREELFDLLIEGPSGLSVVAILNGSGFDKTAFAADTYNNNHIKFYF--DCLAWVRVSIAYDSGKILDD 258 (788)
Q Consensus 181 ~~~~~~~vGr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F--~~~~wv~vs~~~~~~~~~~~ 258 (788)
+..|.++||-+..++.|.+++..+. -...+-++|..|+||||+|+.+...---.... ..... ..++.-...+.
T Consensus 12 P~~f~dviGQe~vv~~L~~~l~~~r-l~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~----~pCg~C~~C~~ 86 (618)
T PRK14951 12 PRSFSEMVGQEHVVQALTNALTQQR-LHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITA----TPCGVCQACRD 86 (618)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCC----CCCCccHHHHH
Confidence 3445889998888888888887654 34667899999999999999885421000000 00000 01111111222
Q ss_pred HHHHcCCCCCCc-ccccCCHHHHHHHHHHH----hcCCcEEEEEeCCCC-ChhhHHHHhhhcCCCCCCcEEEEec-CChH
Q 003890 259 IIKSVMPPSRVS-VIIGEDYKLKKTILRDY----LTNKKYFIVLDDVFN-DSDIWDDLEQVLPDNQNGSRVLITV-TDLD 331 (788)
Q Consensus 259 il~~l~~~~~~~-~~~~~~~~~~~~~l~~~----l~~kr~LlVLDdvw~-~~~~~~~l~~~l~~~~~gskIivTT-R~~~ 331 (788)
|...-....... .-.....+++.+.+... ..++.-++|+|+|.. +...++.+...+.......++|++| ....
T Consensus 87 i~~g~h~D~~eldaas~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~Ttd~~k 166 (618)
T PRK14951 87 IDSGRFVDYTELDAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDPQK 166 (618)
T ss_pred HHcCCCCceeecCcccccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEEEECCchh
Confidence 211000000000 00111223333222221 124555889999963 4567888888777655566666555 4344
Q ss_pred HH
Q 003890 332 LL 333 (788)
Q Consensus 332 v~ 333 (788)
+.
T Consensus 167 il 168 (618)
T PRK14951 167 VP 168 (618)
T ss_pred hh
Confidence 33
No 100
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=97.48 E-value=0.00056 Score=77.39 Aligned_cols=50 Identities=14% Similarity=0.022 Sum_probs=41.4
Q ss_pred CCCCCCCcccchhcHHHHHHHHhcCCCCcEEEEEEcCCCChHHHHHHHHHc
Q 003890 180 EGQPRLDISEFERGREELFDLLIEGPSGLSVVAILNGSGFDKTAFAADTYN 230 (788)
Q Consensus 180 ~~~~~~~~vGr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 230 (788)
.|..+.+++|.+..++.+.+.+..+. -.+.+-++|+.|+||||+|+.+..
T Consensus 11 RP~~F~dIIGQe~iv~~L~~aI~~~r-l~hA~Lf~GP~GvGKTTlA~~lAk 60 (605)
T PRK05896 11 RPHNFKQIIGQELIKKILVNAILNNK-LTHAYIFSGPRGIGKTSIAKIFAK 60 (605)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHH
Confidence 34455889999999999999887653 245778999999999999999877
No 101
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.47 E-value=2.3e-06 Score=94.59 Aligned_cols=119 Identities=20% Similarity=0.188 Sum_probs=74.1
Q ss_pred ccEEEecCCCCCCCCccccCCCCccEEEecCCCCcccChhhcCCCCCcEEEccCCCCcccch-hhhcccccceeeccCcc
Q 003890 550 LRILNLGSAVLVQFPPGLENLFHLKYLKLNIPSLKCLPSLLCTLLNLQTLEMPSSYVDQSPE-DIWMMQKLMHLNFGSIT 628 (788)
Q Consensus 550 L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~lp~-~l~~L~~L~~L~l~~~~ 628 (788)
|.+.+.++|.+..+..++.-+++|+.|+|+.|++...- .+..|.+|.+|||+.|.+..+|. +...+. |+.|.+.+|.
T Consensus 166 L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN~ 243 (1096)
T KOG1859|consen 166 LATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNNA 243 (1096)
T ss_pred HhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhH-HHHhcccccccccccchhccccccchhhhh-heeeeecccH
Confidence 44555556665555556666677777777777776664 66677777777777777777765 333343 7777777764
Q ss_pred CC--CCCcCCcCccccccccccccccc---cCccccCCCCCCCeEEEEccC
Q 003890 629 LP--APPKNYSSSLKNLIFISTLNPSS---CTPDILGRLPNVQTLRISGDL 674 (788)
Q Consensus 629 ~~--~~i~~~~~~l~~L~~L~~~~~~~---~~~~~l~~L~~L~~L~l~~~~ 674 (788)
+. .++ .+|++|+.|+++.+-. ..+..+..|..|+.|.+.||.
T Consensus 244 l~tL~gi----e~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNP 290 (1096)
T KOG1859|consen 244 LTTLRGI----ENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNP 290 (1096)
T ss_pred HHhhhhH----HhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCc
Confidence 43 345 6677777777664322 223335556666777777765
No 102
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.45 E-value=1.7e-05 Score=70.30 Aligned_cols=86 Identities=19% Similarity=0.165 Sum_probs=57.7
Q ss_pred hhhcCCccccEEEecCCCCCCCCccccCC-CCccEEEecCCCCcccChhhcCCCCCcEEEccCCCCcccchhhhcccccc
Q 003890 542 NFCEKFKHLRILNLGSAVLVQFPPGLENL-FHLKYLKLNIPSLKCLPSLLCTLLNLQTLEMPSSYVDQSPEDIWMMQKLM 620 (788)
Q Consensus 542 ~~~~~l~~L~~L~L~~~~l~~lp~~i~~L-~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~lp~~l~~L~~L~ 620 (788)
..+....+|...+|++|.+..+|+.|... +.+..|++.+|.|..+|..+..++.|+.|+++.|.+...|..+..|.+|-
T Consensus 47 y~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~ 126 (177)
T KOG4579|consen 47 YMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLD 126 (177)
T ss_pred HHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCccccchHHHHHHHhHH
Confidence 44455566666777777777666665443 36677777777777777777777777777777776666676666677777
Q ss_pred eeeccCc
Q 003890 621 HLNFGSI 627 (788)
Q Consensus 621 ~L~l~~~ 627 (788)
+|+..++
T Consensus 127 ~Lds~~n 133 (177)
T KOG4579|consen 127 MLDSPEN 133 (177)
T ss_pred HhcCCCC
Confidence 7766555
No 103
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.45 E-value=0.0012 Score=72.68 Aligned_cols=146 Identities=12% Similarity=0.037 Sum_probs=77.9
Q ss_pred CCCCCCcccchhcHHHHHHHHhcCCCCcEEEEEEcCCCChHHHHHHHHHcccCcccccceeEEEE-eCCCCChHHHHHHH
Q 003890 181 GQPRLDISEFERGREELFDLLIEGPSGLSVVAILNGSGFDKTAFAADTYNNNHIKFYFDCLAWVR-VSIAYDSGKILDDI 259 (788)
Q Consensus 181 ~~~~~~~vGr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~-vs~~~~~~~~~~~i 259 (788)
|..+.+++|-+..++.+.+++..+. -...+-++|+.|+||||+|+.+.+.-.-...+....|.. +...+..-...+.+
T Consensus 12 P~~~~eiiGq~~~~~~L~~~~~~~~-~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c~~c~~c~~~ 90 (397)
T PRK14955 12 PKKFADITAQEHITRTIQNSLRMGR-VGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPCGECESCRDF 90 (397)
T ss_pred CCcHhhccChHHHHHHHHHHHHhCC-cceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCCCCCHHHHHH
Confidence 3344789999999998888887654 234577899999999999999887321111111111110 01111111222222
Q ss_pred HHHcCCCCCCccc-ccCCHHHHHHHHHHHh-----cCCcEEEEEeCCCC-ChhhHHHHhhhcCCCCCCcEEEEecC
Q 003890 260 IKSVMPPSRVSVI-IGEDYKLKKTILRDYL-----TNKKYFIVLDDVFN-DSDIWDDLEQVLPDNQNGSRVLITVT 328 (788)
Q Consensus 260 l~~l~~~~~~~~~-~~~~~~~~~~~l~~~l-----~~kr~LlVLDdvw~-~~~~~~~l~~~l~~~~~gskIivTTR 328 (788)
............. .....+++.+. .+.+ .+++-++|+|++.. ....++.+...+....+.+.+|++|.
T Consensus 91 ~~~~~~n~~~~~~~~~~~id~Ir~l-~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il~t~ 165 (397)
T PRK14955 91 DAGTSLNISEFDAASNNSVDDIRLL-RENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATT 165 (397)
T ss_pred hcCCCCCeEeecccccCCHHHHHHH-HHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEEEeC
Confidence 2111100000000 11123333332 2222 34566889999952 44678888888876666777665553
No 104
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.44 E-value=0.00067 Score=74.69 Aligned_cols=144 Identities=12% Similarity=0.007 Sum_probs=77.0
Q ss_pred CCCCCCcccchhcHHHHHHHHhcCCCCcEEEEEEcCCCChHHHHHHHHHcccCcccccceeEEEEeCCCCChHHHHHHHH
Q 003890 181 GQPRLDISEFERGREELFDLLIEGPSGLSVVAILNGSGFDKTAFAADTYNNNHIKFYFDCLAWVRVSIAYDSGKILDDII 260 (788)
Q Consensus 181 ~~~~~~~vGr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il 260 (788)
|..+.++||-+..+..+..++..+. -...+-++|..|+||||+|+.+... +...-.. -...+..... ...+.
T Consensus 14 P~~f~dvVGQe~iv~~L~~~i~~~r-i~ha~Lf~GP~GtGKTTlAriLAk~--Lnce~~~-~~~pCg~C~s----C~~i~ 85 (484)
T PRK14956 14 PQFFRDVIHQDLAIGALQNALKSGK-IGHAYIFFGPRGVGKTTIARILAKR--LNCENPI-GNEPCNECTS----CLEIT 85 (484)
T ss_pred CCCHHHHhChHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHh--cCccccc-CccccCCCcH----HHHHH
Confidence 4445889999999999999887654 2346789999999999999999873 2211000 0000011101 11222
Q ss_pred HHcCCCCCCccc-ccCCHHH---HHHHHHHH-hcCCcEEEEEeCCCC-ChhhHHHHhhhcCCCCCCcEEE-EecCChHH
Q 003890 261 KSVMPPSRVSVI-IGEDYKL---KKTILRDY-LTNKKYFIVLDDVFN-DSDIWDDLEQVLPDNQNGSRVL-ITVTDLDL 332 (788)
Q Consensus 261 ~~l~~~~~~~~~-~~~~~~~---~~~~l~~~-l~~kr~LlVLDdvw~-~~~~~~~l~~~l~~~~~gskIi-vTTR~~~v 332 (788)
........+... .....++ +.+.+... ..++.-++|+|++.. +...++.+...+........+| .||....+
T Consensus 86 ~g~~~dviEIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~~kI 164 (484)
T PRK14956 86 KGISSDVLEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHKI 164 (484)
T ss_pred ccCCccceeechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCChhhc
Confidence 211111000000 0111222 22222211 245667999999963 4577888877776544455544 45444444
No 105
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.40 E-value=4e-05 Score=67.97 Aligned_cols=81 Identities=23% Similarity=0.329 Sum_probs=47.3
Q ss_pred cccEEEecCCCCCCCCc---cccCCCCccEEEecCCCCcccChhhc-CCCCCcEEEccCCCCcccchhhhcccccceeec
Q 003890 549 HLRILNLGSAVLVQFPP---GLENLFHLKYLKLNIPSLKCLPSLLC-TLLNLQTLEMPSSYVDQSPEDIWMMQKLMHLNF 624 (788)
Q Consensus 549 ~L~~L~L~~~~l~~lp~---~i~~L~~L~~L~L~~~~i~~lp~~i~-~L~~L~~L~L~~~~l~~lp~~l~~L~~L~~L~l 624 (788)
.+..+||++|++-.+++ .+....+|...+|++|.+...|+.+. ..+.+++|++.+|.+.++|..+..++.|+.|++
T Consensus 28 E~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl 107 (177)
T KOG4579|consen 28 ELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNL 107 (177)
T ss_pred HhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhccc
Confidence 35556666666543332 33444556666666666666666553 334566666666666666666666666666666
Q ss_pred cCccC
Q 003890 625 GSITL 629 (788)
Q Consensus 625 ~~~~~ 629 (788)
..|.+
T Consensus 108 ~~N~l 112 (177)
T KOG4579|consen 108 RFNPL 112 (177)
T ss_pred ccCcc
Confidence 65543
No 106
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=97.38 E-value=0.0018 Score=70.72 Aligned_cols=49 Identities=18% Similarity=0.017 Sum_probs=40.2
Q ss_pred CCCCCCcccchhcHHHHHHHHhcCCCCcEEEEEEcCCCChHHHHHHHHHc
Q 003890 181 GQPRLDISEFERGREELFDLLIEGPSGLSVVAILNGSGFDKTAFAADTYN 230 (788)
Q Consensus 181 ~~~~~~~vGr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 230 (788)
|..+.+++|.+..++.+.+++..+. -...+-++|.+|+||||+|+.+..
T Consensus 10 p~~~~~iig~~~~~~~l~~~~~~~~-~~~~~Ll~G~~G~GKt~~a~~la~ 58 (355)
T TIGR02397 10 PQTFEDVIGQEHIVQTLKNAIKNGR-IAHAYLFSGPRGTGKTSIARIFAK 58 (355)
T ss_pred CCcHhhccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHH
Confidence 3344789999999999999887654 345778999999999999988875
No 107
>PRK08116 hypothetical protein; Validated
Probab=97.36 E-value=0.00095 Score=69.15 Aligned_cols=102 Identities=19% Similarity=0.213 Sum_probs=58.2
Q ss_pred EEEEEEcCCCChHHHHHHHHHcccCcccccceeEEEEeCCCCChHHHHHHHHHHcCCCCCCcccccCCHHHHHHHHHHHh
Q 003890 209 SVVAILNGSGFDKTAFAADTYNNNHIKFYFDCLAWVRVSIAYDSGKILDDIIKSVMPPSRVSVIIGEDYKLKKTILRDYL 288 (788)
Q Consensus 209 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~~l 288 (788)
..+.++|.+|+|||.||..+++. +..+-..+++++ ..+++..+........ ..+.. .+.+.+
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~--l~~~~~~v~~~~------~~~ll~~i~~~~~~~~------~~~~~----~~~~~l 176 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANE--LIEKGVPVIFVN------FPQLLNRIKSTYKSSG------KEDEN----EIIRSL 176 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHH--HHHcCCeEEEEE------HHHHHHHHHHHHhccc------cccHH----HHHHHh
Confidence 45789999999999999999994 433323356654 4445555555443221 11112 233344
Q ss_pred cCCcEEEEEeCCCC-ChhhHH--HHhhhcCC-CCCCcEEEEecCC
Q 003890 289 TNKKYFIVLDDVFN-DSDIWD--DLEQVLPD-NQNGSRVLITVTD 329 (788)
Q Consensus 289 ~~kr~LlVLDdvw~-~~~~~~--~l~~~l~~-~~~gskIivTTR~ 329 (788)
.+-. ||||||+.. ...+|. .+...+.. -..|..+||||..
T Consensus 177 ~~~d-lLviDDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~ 220 (268)
T PRK08116 177 VNAD-LLILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNL 220 (268)
T ss_pred cCCC-EEEEecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 4444 899999941 233442 23333321 1245568888875
No 108
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.36 E-value=2.2e-05 Score=82.06 Aligned_cols=256 Identities=17% Similarity=0.102 Sum_probs=135.1
Q ss_pred ccccceEEecCCCCchhhhhhhhhhhcCCccccEEEecCCC-CCC--CCccccCCCCccEEEecCCC-Ccc--cChhhcC
Q 003890 519 DIYLQSFLNHSSESDHLALIDCENFCEKFKHLRILNLGSAV-LVQ--FPPGLENLFHLKYLKLNIPS-LKC--LPSLLCT 592 (788)
Q Consensus 519 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~-l~~--lp~~i~~L~~L~~L~L~~~~-i~~--lp~~i~~ 592 (788)
++++..|.+.++..-... .....-..+++|+.|+|..|. ++. +-.-...+++|+||+++++. |.. +-.-..+
T Consensus 163 CpnIehL~l~gc~~iTd~--s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG 240 (483)
T KOG4341|consen 163 CPNIEHLALYGCKKITDS--SLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRG 240 (483)
T ss_pred CCchhhhhhhcceeccHH--HHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhcc
Confidence 666666666666531110 111333567778888887765 441 11122346778888888764 442 3223456
Q ss_pred CCCCcEEEccCC-C--CcccchhhhcccccceeeccCccCCCCCc--CCcCccccccccccccccc---cCcccc-CCCC
Q 003890 593 LLNLQTLEMPSS-Y--VDQSPEDIWMMQKLMHLNFGSITLPAPPK--NYSSSLKNLIFISTLNPSS---CTPDIL-GRLP 663 (788)
Q Consensus 593 L~~L~~L~L~~~-~--l~~lp~~l~~L~~L~~L~l~~~~~~~~i~--~~~~~l~~L~~L~~~~~~~---~~~~~l-~~L~ 663 (788)
+++|+.+.++|| . +..+-..-+...-+..+++..|....... ..-..+..||.|...++.. ..+..| .+..
T Consensus 241 ~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~ 320 (483)
T KOG4341|consen 241 CKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCH 320 (483)
T ss_pred chhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCC
Confidence 666777777776 1 12111111223334444444442221110 0002355677777665432 122223 3457
Q ss_pred CCCeEEEEccCCcChhcHHHhc-cCCCCCCEEEeecCCCCCcccccccCCCccccccc-c--ccccc----cccCcccCC
Q 003890 664 NVQTLRISGDLSCYHSGVSKSL-CELHKLECLKLVNERKPSRMVLYEYQFPPTDMARI-L--SQLIR----QEFVESEMS 735 (788)
Q Consensus 664 ~L~~L~l~~~~~~~~~~~~~~l-~~l~~L~~L~L~~~~~~~~~~~~~~l~~~~~L~~L-~--~~l~~----~~lp~~l~~ 735 (788)
+|+.|.+..|.. ....-...+ .+.++|+.+++..+....+......-.+++.|+.| . .+... ..+...-..
T Consensus 321 ~L~~l~l~~c~~-fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~ 399 (483)
T KOG4341|consen 321 NLQVLELSGCQQ-FSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCS 399 (483)
T ss_pred ceEEEeccccch-hhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhcccc
Confidence 788888888761 111111122 34577888888755444221112222346777777 2 22111 112222235
Q ss_pred CCCcceEEEeccccccccccCCcccccccccCCeeEecccCchhh
Q 003890 736 LPLLQLLDLEESDEEDDERSDILEILQDINDFVHESEEAIDTFFI 780 (788)
Q Consensus 736 l~~L~~L~L~~~~l~~~~~~~~l~~l~~L~~L~~L~L~~~~~l~~ 780 (788)
+..|..|.|++|+...+. .+..+...++|+.+++.+|...+-
T Consensus 400 ~~~l~~lEL~n~p~i~d~---~Le~l~~c~~Leri~l~~~q~vtk 441 (483)
T KOG4341|consen 400 LEGLEVLELDNCPLITDA---TLEHLSICRNLERIELIDCQDVTK 441 (483)
T ss_pred ccccceeeecCCCCchHH---HHHHHhhCcccceeeeechhhhhh
Confidence 788999999999877652 466788889999999999977653
No 109
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=97.36 E-value=0.00042 Score=70.23 Aligned_cols=59 Identities=10% Similarity=-0.001 Sum_probs=38.8
Q ss_pred CCccc--chhcHHHHHHHHhcCCCCcEEEEEEcCCCChHHHHHHHHHcccCcccccceeEEEEeC
Q 003890 185 LDISE--FERGREELFDLLIEGPSGLSVVAILNGSGFDKTAFAADTYNNNHIKFYFDCLAWVRVS 247 (788)
Q Consensus 185 ~~~vG--r~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs 247 (788)
.++++ -+..++.+.+++... ....+.|+|.+|+|||+||+.+++. ........++++++
T Consensus 15 ~~~~~~~~~~~~~~l~~~~~~~--~~~~lll~G~~G~GKT~la~~~~~~--~~~~~~~~~~i~~~ 75 (226)
T TIGR03420 15 DNFYAGGNAELLAALRQLAAGK--GDRFLYLWGESGSGKSHLLQAACAA--AEERGKSAIYLPLA 75 (226)
T ss_pred cCcCcCCcHHHHHHHHHHHhcC--CCCeEEEECCCCCCHHHHHHHHHHH--HHhcCCcEEEEeHH
Confidence 45552 344566666665432 3678889999999999999999984 32233345565543
No 110
>PRK08118 topology modulation protein; Reviewed
Probab=97.34 E-value=0.00011 Score=70.36 Aligned_cols=35 Identities=20% Similarity=0.384 Sum_probs=28.1
Q ss_pred EEEEEEcCCCChHHHHHHHHHcccCcc-cccceeEE
Q 003890 209 SVVAILNGSGFDKTAFAADTYNNNHIK-FYFDCLAW 243 (788)
Q Consensus 209 ~vi~I~G~gGiGKTtLa~~v~~~~~~~-~~F~~~~w 243 (788)
+.|.|+|++|+||||||+.+++...+. -+|+..+|
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~ 37 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFW 37 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCceecchhhc
Confidence 368899999999999999999854443 45776776
No 111
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=97.33 E-value=0.00072 Score=71.09 Aligned_cols=90 Identities=23% Similarity=0.339 Sum_probs=53.1
Q ss_pred CcEEEEEEcCCCChHHHHHHHHHcccCcccccceeEEEEeCCCCChHHHHHHHHHHcCCCCCCcccccCCHHHHHHHHHH
Q 003890 207 GLSVVAILNGSGFDKTAFAADTYNNNHIKFYFDCLAWVRVSIAYDSGKILDDIIKSVMPPSRVSVIIGEDYKLKKTILRD 286 (788)
Q Consensus 207 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~ 286 (788)
.+.-...||++|+||||||+.+.. .....|. .+|-..+-.+=++++++.. -+.
T Consensus 47 ~l~SmIl~GPPG~GKTTlA~liA~--~~~~~f~-----~~sAv~~gvkdlr~i~e~a--------------------~~~ 99 (436)
T COG2256 47 HLHSMILWGPPGTGKTTLARLIAG--TTNAAFE-----ALSAVTSGVKDLREIIEEA--------------------RKN 99 (436)
T ss_pred CCceeEEECCCCCCHHHHHHHHHH--hhCCceE-----EeccccccHHHHHHHHHHH--------------------HHH
Confidence 366777999999999999999998 4555543 2333222111222222211 122
Q ss_pred HhcCCcEEEEEeCCCC-ChhhHHHHhhhcCCCCCCcEEEEe
Q 003890 287 YLTNKKYFIVLDDVFN-DSDIWDDLEQVLPDNQNGSRVLIT 326 (788)
Q Consensus 287 ~l~~kr~LlVLDdvw~-~~~~~~~l~~~l~~~~~gskIivT 326 (788)
...|+|.+|.+|.|.. +..+-+. .+|.-..|.-|+|-
T Consensus 100 ~~~gr~tiLflDEIHRfnK~QQD~---lLp~vE~G~iilIG 137 (436)
T COG2256 100 RLLGRRTILFLDEIHRFNKAQQDA---LLPHVENGTIILIG 137 (436)
T ss_pred HhcCCceEEEEehhhhcChhhhhh---hhhhhcCCeEEEEe
Confidence 2358999999999952 2222222 34445567777763
No 112
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=97.31 E-value=0.00079 Score=73.51 Aligned_cols=52 Identities=19% Similarity=0.125 Sum_probs=40.8
Q ss_pred CCcccchhcHHHHHHHHhcC--C---------CCcEEEEEEcCCCChHHHHHHHHHcccCccccc
Q 003890 185 LDISEFERGREELFDLLIEG--P---------SGLSVVAILNGSGFDKTAFAADTYNNNHIKFYF 238 (788)
Q Consensus 185 ~~~vGr~~~~~~i~~~L~~~--~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F 238 (788)
.++.|++..+++|.+.+... . ...+-+.++|++|+|||++|+.+++ +....|
T Consensus 122 ~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~--~l~~~~ 184 (364)
T TIGR01242 122 EDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAH--ETNATF 184 (364)
T ss_pred HHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHH--hCCCCE
Confidence 78999999999999887431 0 2345688999999999999999998 444443
No 113
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=97.31 E-value=0.0018 Score=70.67 Aligned_cols=47 Identities=13% Similarity=-0.081 Sum_probs=38.3
Q ss_pred CCCcccchhcHHHHHHHHhcCCC--------CcEEEEEEcCCCChHHHHHHHHHc
Q 003890 184 RLDISEFERGREELFDLLIEGPS--------GLSVVAILNGSGFDKTAFAADTYN 230 (788)
Q Consensus 184 ~~~~vGr~~~~~~i~~~L~~~~~--------~~~vi~I~G~gGiGKTtLa~~v~~ 230 (788)
+.+++|-+..++.+.+.+..+.. -..-+-++|+.|+||||+|+.+..
T Consensus 4 f~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~ 58 (394)
T PRK07940 4 WDDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAA 58 (394)
T ss_pred hhhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHH
Confidence 36789999999999999976431 245677999999999999998865
No 114
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=97.30 E-value=0.00082 Score=69.22 Aligned_cols=98 Identities=20% Similarity=0.292 Sum_probs=61.6
Q ss_pred CcEEEEEEcCCCChHHHHHHHHHcccCcccccceeEEEEeCCCCChHHHHHHHHHHcCCCCCCcccccCCHHHHHHHHHH
Q 003890 207 GLSVVAILNGSGFDKTAFAADTYNNNHIKFYFDCLAWVRVSIAYDSGKILDDIIKSVMPPSRVSVIIGEDYKLKKTILRD 286 (788)
Q Consensus 207 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~ 286 (788)
....+.+||++|+||||||+.+.+..+-.. ..||..|-...-..=.++|.++-... .
T Consensus 161 ~ipSmIlWGppG~GKTtlArlia~tsk~~S----yrfvelSAt~a~t~dvR~ife~aq~~-------------------~ 217 (554)
T KOG2028|consen 161 RIPSMILWGPPGTGKTTLARLIASTSKKHS----YRFVELSATNAKTNDVRDIFEQAQNE-------------------K 217 (554)
T ss_pred CCCceEEecCCCCchHHHHHHHHhhcCCCc----eEEEEEeccccchHHHHHHHHHHHHH-------------------H
Confidence 477888999999999999999998543333 56777765543333344444443221 2
Q ss_pred HhcCCcEEEEEeCCCC-ChhhHHHHhhhcCCCCCCcEEEE--ecCCh
Q 003890 287 YLTNKKYFIVLDDVFN-DSDIWDDLEQVLPDNQNGSRVLI--TVTDL 330 (788)
Q Consensus 287 ~l~~kr~LlVLDdvw~-~~~~~~~l~~~l~~~~~gskIiv--TTR~~ 330 (788)
.+.++|..|.+|.|.. +..+-+ ..+|.-.+|.-++| ||-+.
T Consensus 218 ~l~krkTilFiDEiHRFNksQQD---~fLP~VE~G~I~lIGATTENP 261 (554)
T KOG2028|consen 218 SLTKRKTILFIDEIHRFNKSQQD---TFLPHVENGDITLIGATTENP 261 (554)
T ss_pred hhhcceeEEEeHHhhhhhhhhhh---cccceeccCceEEEecccCCC
Confidence 3467899999999951 222222 23555566776665 55553
No 115
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=97.29 E-value=0.0013 Score=70.27 Aligned_cols=113 Identities=10% Similarity=0.040 Sum_probs=80.6
Q ss_pred CCcccchhcHHHHHHHHhcC--CCCcEEEEEEcCCCChHHHHHHHHHcccCcccccceeEEEEeCCCCChHHHHHHHHHH
Q 003890 185 LDISEFERGREELFDLLIEG--PSGLSVVAILNGSGFDKTAFAADTYNNNHIKFYFDCLAWVRVSIAYDSGKILDDIIKS 262 (788)
Q Consensus 185 ~~~vGr~~~~~~i~~~L~~~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~~ 262 (788)
..++||+.+++.+.+|+... ....+-+-|.|.+|.|||.+...|+.+..-...=.+++++++-.-..+.++...|...
T Consensus 150 ~~l~gRe~e~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~aiF~kI~~~ 229 (529)
T KOG2227|consen 150 GTLKGRELEMDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASAIFKKIFSS 229 (529)
T ss_pred CCccchHHHHHHHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHHHHHHHHHH
Confidence 77999999999999999764 3357788999999999999999999864322222345777666545667788888777
Q ss_pred cCCCCCCcccccCCHHHHHHHHHHHhcCC--cEEEEEeCCC
Q 003890 263 VMPPSRVSVIIGEDYKLKKTILRDYLTNK--KYFIVLDDVF 301 (788)
Q Consensus 263 l~~~~~~~~~~~~~~~~~~~~l~~~l~~k--r~LlVLDdvw 301 (788)
+..... ......+....+.++.++. -+|+|||...
T Consensus 230 ~~q~~~----s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD 266 (529)
T KOG2227|consen 230 LLQDLV----SPGTGMQHLEKFEKHTKQSKFMLLLVLDEMD 266 (529)
T ss_pred HHHHhc----CCchhHHHHHHHHHHHhcccceEEEEechhh
Confidence 722211 1122266677777777664 5799999985
No 116
>PRK08727 hypothetical protein; Validated
Probab=97.29 E-value=0.00099 Score=67.68 Aligned_cols=58 Identities=14% Similarity=-0.003 Sum_probs=35.8
Q ss_pred CCcccchh-cHHHHHHHHhcCCCCcEEEEEEcCCCChHHHHHHHHHcccCcccccceeEEEEe
Q 003890 185 LDISEFER-GREELFDLLIEGPSGLSVVAILNGSGFDKTAFAADTYNNNHIKFYFDCLAWVRV 246 (788)
Q Consensus 185 ~~~vGr~~-~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v 246 (788)
++|++... ....+..... +. ....+.|+|..|+|||+|++.+++. .......+.|+++
T Consensus 19 ~~f~~~~~n~~~~~~~~~~-~~-~~~~l~l~G~~G~GKThL~~a~~~~--~~~~~~~~~y~~~ 77 (233)
T PRK08727 19 DSYIAAPDGLLAQLQALAA-GQ-SSDWLYLSGPAGTGKTHLALALCAA--AEQAGRSSAYLPL 77 (233)
T ss_pred hhccCCcHHHHHHHHHHHh-cc-CCCeEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEEeH
Confidence 55665443 3333333332 22 2456999999999999999999883 3333334566653
No 117
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.28 E-value=0.00047 Score=69.12 Aligned_cols=37 Identities=19% Similarity=0.219 Sum_probs=30.6
Q ss_pred cEEEEEEcCCCChHHHHHHHHHcccCcccccceeEEEEe
Q 003890 208 LSVVAILNGSGFDKTAFAADTYNNNHIKFYFDCLAWVRV 246 (788)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v 246 (788)
.-.++|+|..|+|||||+..+.. .....|+++++++-
T Consensus 13 ~fr~viIG~sGSGKT~li~~lL~--~~~~~f~~I~l~t~ 49 (241)
T PF04665_consen 13 PFRMVIIGKSGSGKTTLIKSLLY--YLRHKFDHIFLITP 49 (241)
T ss_pred CceEEEECCCCCCHHHHHHHHHH--hhcccCCEEEEEec
Confidence 34678999999999999999987 57888988777654
No 118
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.28 E-value=0.0021 Score=73.34 Aligned_cols=49 Identities=18% Similarity=-0.012 Sum_probs=40.4
Q ss_pred CCCCCCcccchhcHHHHHHHHhcCCCCcEEEEEEcCCCChHHHHHHHHHc
Q 003890 181 GQPRLDISEFERGREELFDLLIEGPSGLSVVAILNGSGFDKTAFAADTYN 230 (788)
Q Consensus 181 ~~~~~~~vGr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 230 (788)
+..|.++||-+..++.+.+++..+. -...+-++|..|+||||+|+.+..
T Consensus 9 P~~f~eivGq~~i~~~L~~~i~~~r-~~ha~Lf~Gp~G~GKTt~A~~lAk 57 (584)
T PRK14952 9 PATFAEVVGQEHVTEPLSSALDAGR-INHAYLFSGPRGCGKTSSARILAR 57 (584)
T ss_pred CCcHHHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHH
Confidence 3344889999999999999997654 345678999999999999999886
No 119
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.26 E-value=0.001 Score=60.87 Aligned_cols=21 Identities=19% Similarity=0.194 Sum_probs=19.3
Q ss_pred EEEEcCCCChHHHHHHHHHcc
Q 003890 211 VAILNGSGFDKTAFAADTYNN 231 (788)
Q Consensus 211 i~I~G~gGiGKTtLa~~v~~~ 231 (788)
|-|+|.+|+||||+|+.+++.
T Consensus 1 ill~G~~G~GKT~l~~~la~~ 21 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQY 21 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHH
T ss_pred CEEECcCCCCeeHHHHHHHhh
Confidence 568999999999999999994
No 120
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=97.26 E-value=0.00057 Score=67.06 Aligned_cols=54 Identities=19% Similarity=0.143 Sum_probs=36.8
Q ss_pred CCCCcccchhcHHHHHHHHh---cCCCCcEEEEEEcCCCChHHHHHHHHHcccCccccc
Q 003890 183 PRLDISEFERGREELFDLLI---EGPSGLSVVAILNGSGFDKTAFAADTYNNNHIKFYF 238 (788)
Q Consensus 183 ~~~~~vGr~~~~~~i~~~L~---~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F 238 (788)
.+.++||-+.-++.+.-++. ...+...-+-.||++|+||||||..+.+ +....|
T Consensus 22 ~L~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~--e~~~~~ 78 (233)
T PF05496_consen 22 SLDEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIAN--ELGVNF 78 (233)
T ss_dssp SCCCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHH--HCT--E
T ss_pred CHHHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHh--ccCCCe
Confidence 44899999988887655543 2334577888999999999999999999 455555
No 121
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.26 E-value=0.0019 Score=70.64 Aligned_cols=49 Identities=14% Similarity=0.017 Sum_probs=40.9
Q ss_pred CCCCCCcccchhcHHHHHHHHhcCCCCcEEEEEEcCCCChHHHHHHHHHc
Q 003890 181 GQPRLDISEFERGREELFDLLIEGPSGLSVVAILNGSGFDKTAFAADTYN 230 (788)
Q Consensus 181 ~~~~~~~vGr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 230 (788)
|..+.+++|.+...+.+.+.+..+. -.+.+-++|++|+||||+|+.+.+
T Consensus 13 P~~~~~iig~~~~~~~l~~~i~~~~-~~~~~L~~G~~G~GKt~~a~~la~ 61 (367)
T PRK14970 13 PQTFDDVVGQSHITNTLLNAIENNH-LAQALLFCGPRGVGKTTCARILAR 61 (367)
T ss_pred CCcHHhcCCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHH
Confidence 3444789999999999999997653 345788999999999999999877
No 122
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=97.22 E-value=0.0025 Score=71.50 Aligned_cols=108 Identities=14% Similarity=0.132 Sum_probs=68.5
Q ss_pred HHHHHHHHHHHHHhccCCCCCCCCccCCC-----ccccccc--------CCCCCC-CCcccchhcHHHHHHHHhc----C
Q 003890 143 GLHSKIIDIRNRMQQLPPGDNGSDISEQG-----KKIIRLL--------SEGQPR-LDISEFERGREELFDLLIE----G 204 (788)
Q Consensus 143 ~~~~~i~~l~~~l~~i~~~~~~~~~~~~~-----~~~~~~~--------~~~~~~-~~~vGr~~~~~~i~~~L~~----~ 204 (788)
.+-+.+.+=..+++.+-.....|++...= ..||-.. +..... .+=+|+++-+++|++++.- +
T Consensus 355 ~v~kv~~eEl~kL~~le~~~sEfnvtrNYLdwlt~LPWgk~S~En~dl~~Ak~iLdeDHYgm~dVKeRILEfiAV~kLrg 434 (906)
T KOG2004|consen 355 HVLKVIDEELTKLKLLEPSSSEFNVTRNYLDWLTSLPWGKSSTENLDLARAKEILDEDHYGMEDVKERILEFIAVGKLRG 434 (906)
T ss_pred HHHHHHHHHHHHHhccCccccchhHHHHHHHHHHhCCCCCCChhhhhHHHHHHhhcccccchHHHHHHHHHHHHHHhhcc
Confidence 34445555556677777777777654210 1111110 000111 6678999999999999954 3
Q ss_pred CCCcEEEEEEcCCCChHHHHHHHHHcccCcccccceeEEEEeCCCCChHHH
Q 003890 205 PSGLSVVAILNGSGFDKTAFAADTYNNNHIKFYFDCLAWVRVSIAYDSGKI 255 (788)
Q Consensus 205 ~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~ 255 (788)
..+-++++.+|++|||||.+|+.++. .....| +-++|+.-.|+.+|
T Consensus 435 s~qGkIlCf~GPPGVGKTSI~kSIA~--ALnRkF---fRfSvGG~tDvAeI 480 (906)
T KOG2004|consen 435 SVQGKILCFVGPPGVGKTSIAKSIAR--ALNRKF---FRFSVGGMTDVAEI 480 (906)
T ss_pred cCCCcEEEEeCCCCCCcccHHHHHHH--HhCCce---EEEeccccccHHhh
Confidence 44678999999999999999999998 455544 23556665555433
No 123
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=97.22 E-value=0.004 Score=61.04 Aligned_cols=41 Identities=7% Similarity=0.191 Sum_probs=29.0
Q ss_pred CCcEEEEEeCCCC-ChhhHHHHhhhcCCCCCCcEEEEecCCh
Q 003890 290 NKKYFIVLDDVFN-DSDIWDDLEQVLPDNQNGSRVLITVTDL 330 (788)
Q Consensus 290 ~kr~LlVLDdvw~-~~~~~~~l~~~l~~~~~gskIivTTR~~ 330 (788)
+.+-++|+||+.. ....++.+...+....+.+.+|++|++.
T Consensus 95 ~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~ 136 (188)
T TIGR00678 95 SGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSP 136 (188)
T ss_pred CCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECCh
Confidence 5666899999953 4556778888877655667777777643
No 124
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.21 E-value=0.0026 Score=71.51 Aligned_cols=49 Identities=12% Similarity=-0.134 Sum_probs=40.0
Q ss_pred CCCCCCcccchhcHHHHHHHHhcCCCCcEEEEEEcCCCChHHHHHHHHHc
Q 003890 181 GQPRLDISEFERGREELFDLLIEGPSGLSVVAILNGSGFDKTAFAADTYN 230 (788)
Q Consensus 181 ~~~~~~~vGr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 230 (788)
|..+.+++|-+.....+.+.+..+. -...+-++|..|+||||+|+.+..
T Consensus 12 P~~f~diiGq~~i~~~L~~~i~~~~-i~hayLf~Gp~G~GKTtlAr~lAk 60 (486)
T PRK14953 12 PKFFKEVIGQEIVVRILKNAVKLQR-VSHAYIFAGPRGTGKTTIARILAK 60 (486)
T ss_pred CCcHHHccChHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHH
Confidence 4445889999999999999997654 345667899999999999998776
No 125
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.19 E-value=0.0036 Score=72.09 Aligned_cols=152 Identities=10% Similarity=-0.007 Sum_probs=79.2
Q ss_pred CCCCCCcccchhcHHHHHHHHhcCCCCcEEEEEEcCCCChHHHHHHHHHcccCcccccceeEEEE-eCCCCChHHHHHHH
Q 003890 181 GQPRLDISEFERGREELFDLLIEGPSGLSVVAILNGSGFDKTAFAADTYNNNHIKFYFDCLAWVR-VSIAYDSGKILDDI 259 (788)
Q Consensus 181 ~~~~~~~vGr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~-vs~~~~~~~~~~~i 259 (788)
+..+.+++|-+..+..+.+.+..+. -...+-++|+.|+||||+|+.+.+.---...++.-.|.. +...+..-...+.+
T Consensus 12 P~~f~eivGQe~i~~~L~~~i~~~r-i~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~Cg~C~sC~~~ 90 (620)
T PRK14954 12 PSKFADITAQEHITHTIQNSLRMDR-VGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPCGECESCRDF 90 (620)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCC-CCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCCccCHHHHHH
Confidence 4445889999999999988887553 245588999999999999988876321111111011110 01111111122222
Q ss_pred HHHcCCCCCCccc-ccCCHHHHHHHHHHH----hcCCcEEEEEeCCCC-ChhhHHHHhhhcCCCCCCcEEEE-ecCChHH
Q 003890 260 IKSVMPPSRVSVI-IGEDYKLKKTILRDY----LTNKKYFIVLDDVFN-DSDIWDDLEQVLPDNQNGSRVLI-TVTDLDL 332 (788)
Q Consensus 260 l~~l~~~~~~~~~-~~~~~~~~~~~l~~~----l~~kr~LlVLDdvw~-~~~~~~~l~~~l~~~~~gskIiv-TTR~~~v 332 (788)
...-......... .....+++...+... ..+++-++|+|++.. .....+.|...+......+.+|+ |++...+
T Consensus 91 ~~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~tv~IL~t~~~~kL 170 (620)
T PRK14954 91 DAGTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFATTELHKI 170 (620)
T ss_pred hccCCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhh
Confidence 1111000000000 112234444333222 245566889999963 44567788888776555666554 4444444
Q ss_pred H
Q 003890 333 L 333 (788)
Q Consensus 333 ~ 333 (788)
.
T Consensus 171 l 171 (620)
T PRK14954 171 P 171 (620)
T ss_pred h
Confidence 3
No 126
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.17 E-value=0.00025 Score=71.03 Aligned_cols=84 Identities=21% Similarity=0.129 Sum_probs=65.5
Q ss_pred ccccceEEecCCCCchhhhhhhhhhhcCCccccEEEecCCCCCCCCccc-cCCCCccEEEecCCCCc--ccChhhcCCCC
Q 003890 519 DIYLQSFLNHSSESDHLALIDCENFCEKFKHLRILNLGSAVLVQFPPGL-ENLFHLKYLKLNIPSLK--CLPSLLCTLLN 595 (788)
Q Consensus 519 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~i-~~L~~L~~L~L~~~~i~--~lp~~i~~L~~ 595 (788)
+++++.+++.++..+. |..+-..+.+++.|++|+|+.|++...-.++ ..+.+|+.|-|+++.+. ...+.+..++.
T Consensus 70 ~~~v~elDL~~N~iSd--WseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~ 147 (418)
T KOG2982|consen 70 VTDVKELDLTGNLISD--WSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPK 147 (418)
T ss_pred hhhhhhhhcccchhcc--HHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchh
Confidence 8899999999988732 3333477889999999999999987433344 46789999999998865 45566788888
Q ss_pred CcEEEccCC
Q 003890 596 LQTLEMPSS 604 (788)
Q Consensus 596 L~~L~L~~~ 604 (788)
++.|.++.|
T Consensus 148 vtelHmS~N 156 (418)
T KOG2982|consen 148 VTELHMSDN 156 (418)
T ss_pred hhhhhhccc
Confidence 888888877
No 127
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.16 E-value=3e-05 Score=86.07 Aligned_cols=125 Identities=17% Similarity=0.170 Sum_probs=73.9
Q ss_pred CCceeEEEeecCcccccc--ccccccccceEEecCCCCchhhhhhhhhhhcCCccccEEEecCCCCCCCCccccCCCCcc
Q 003890 497 PANVKWCYIMKDLIEFFS--LEHSDIYLQSFLNHSSESDHLALIDCENFCEKFKHLRILNLGSAVLVQFPPGLENLFHLK 574 (788)
Q Consensus 497 ~~~~r~Ls~~~~~~~~~~--~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~i~~L~~L~ 574 (788)
|.++...++..|...... ..- ++.|++|.++.|... +. .++..+++|+.|||++|.+..+|.--..=.+|.
T Consensus 163 Wn~L~~a~fsyN~L~~mD~SLql-l~ale~LnLshNk~~-~v-----~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~ 235 (1096)
T KOG1859|consen 163 WNKLATASFSYNRLVLMDESLQL-LPALESLNLSHNKFT-KV-----DNLRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQ 235 (1096)
T ss_pred hhhHhhhhcchhhHHhHHHHHHH-HHHhhhhccchhhhh-hh-----HHHHhcccccccccccchhccccccchhhhhhe
Confidence 444444555544433222 222 667777777766541 11 466677777777777777776663221122377
Q ss_pred EEEecCCCCcccChhhcCCCCCcEEEccCCCCcccch--hhhcccccceeeccCccC
Q 003890 575 YLKLNIPSLKCLPSLLCTLLNLQTLEMPSSYVDQSPE--DIWMMQKLMHLNFGSITL 629 (788)
Q Consensus 575 ~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~lp~--~l~~L~~L~~L~l~~~~~ 629 (788)
.|++++|.++.+ ..+.+|++|+.||++.|-+....+ .++.|..|+.|+|.||.+
T Consensus 236 ~L~lrnN~l~tL-~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 236 LLNLRNNALTTL-RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred eeeecccHHHhh-hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence 777777777766 366777777777777774333322 266777777777776643
No 128
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.15 E-value=0.0035 Score=72.59 Aligned_cols=141 Identities=11% Similarity=0.067 Sum_probs=77.5
Q ss_pred CCCCCCcccchhcHHHHHHHHhcCCCCcEEEEEEcCCCChHHHHHHHHHcccCcccccceeEEEEeCCCCChHHHHHHHH
Q 003890 181 GQPRLDISEFERGREELFDLLIEGPSGLSVVAILNGSGFDKTAFAADTYNNNHIKFYFDCLAWVRVSIAYDSGKILDDII 260 (788)
Q Consensus 181 ~~~~~~~vGr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il 260 (788)
+..+.+++|-+..++.+.+++..+. -...+-++|..|+||||+|+.+... +.... +-.....++.-...+.|.
T Consensus 12 P~~~~eiiGq~~~~~~L~~~i~~~~-i~~a~Lf~Gp~G~GKTtlA~~lA~~--l~c~~----~~~~~~~c~~c~~c~~i~ 84 (585)
T PRK14950 12 SQTFAELVGQEHVVQTLRNAIAEGR-VAHAYLFTGPRGVGKTSTARILAKA--VNCTT----NDPKGRPCGTCEMCRAIA 84 (585)
T ss_pred CCCHHHhcCCHHHHHHHHHHHHhCC-CceEEEEECCCCCCHHHHHHHHHHH--hcCCC----CCCCCCCCccCHHHHHHh
Confidence 3344889999999999988887654 2456678999999999999999873 21100 000001122223333333
Q ss_pred HHcCCCCCCccc-ccCCHHHHHHHHHHHh-----cCCcEEEEEeCCCC-ChhhHHHHhhhcCCCCCCcEEEEecCC
Q 003890 261 KSVMPPSRVSVI-IGEDYKLKKTILRDYL-----TNKKYFIVLDDVFN-DSDIWDDLEQVLPDNQNGSRVLITVTD 329 (788)
Q Consensus 261 ~~l~~~~~~~~~-~~~~~~~~~~~l~~~l-----~~kr~LlVLDdvw~-~~~~~~~l~~~l~~~~~gskIivTTR~ 329 (788)
............ .....+++.+.+ +.+ .+++-++|+|++.. .....+.|...+......+.+|++|.+
T Consensus 85 ~~~~~d~~~i~~~~~~~vd~ir~ii-~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~~ 159 (585)
T PRK14950 85 EGSAVDVIEMDAASHTSVDDAREII-ERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTE 159 (585)
T ss_pred cCCCCeEEEEeccccCCHHHHHHHH-HHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeCC
Confidence 222111000000 112233332222 221 24566899999852 445677777777665556676666543
No 129
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=97.13 E-value=0.003 Score=72.58 Aligned_cols=148 Identities=11% Similarity=-0.007 Sum_probs=77.9
Q ss_pred CCCCCCcccchhcHHHHHHHHhcCCCCcEEEEEEcCCCChHHHHHHHHHcccCcccccce--eEEEEeCCCCChHHHHHH
Q 003890 181 GQPRLDISEFERGREELFDLLIEGPSGLSVVAILNGSGFDKTAFAADTYNNNHIKFYFDC--LAWVRVSIAYDSGKILDD 258 (788)
Q Consensus 181 ~~~~~~~vGr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~--~~wv~vs~~~~~~~~~~~ 258 (788)
+..+.+++|.+..++.+.+.+..+. -..-+-++|..|+||||+|+.+.+.--....... ..+ ..+..-.-.+.
T Consensus 20 P~~f~dliGq~~~v~~L~~~~~~gr-i~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~----~~cg~c~~C~~ 94 (598)
T PRK09111 20 PQTFDDLIGQEAMVRTLTNAFETGR-IAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTI----DLCGVGEHCQA 94 (598)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCcc----ccCcccHHHHH
Confidence 3444889999999999999887654 3456788999999999999998873111110000 000 00011111122
Q ss_pred HHHHcCCCCCCcc-cccCCHHHHHHHHHHH----hcCCcEEEEEeCCCC-ChhhHHHHhhhcCCCCCCcEEEEec-CChH
Q 003890 259 IIKSVMPPSRVSV-IIGEDYKLKKTILRDY----LTNKKYFIVLDDVFN-DSDIWDDLEQVLPDNQNGSRVLITV-TDLD 331 (788)
Q Consensus 259 il~~l~~~~~~~~-~~~~~~~~~~~~l~~~----l~~kr~LlVLDdvw~-~~~~~~~l~~~l~~~~~gskIivTT-R~~~ 331 (788)
|...-........ ......+++.+.+... +.+++-++|+|++.. +....+.|...+.....++++|++| ....
T Consensus 95 i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEePp~~~~fIl~tte~~k 174 (598)
T PRK09111 95 IMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFATTEIRK 174 (598)
T ss_pred HhcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHhCCCCeEEEEEeCChhh
Confidence 2211110000000 0112233333222111 124556799999952 4456778887776655667765544 4444
Q ss_pred HH
Q 003890 332 LL 333 (788)
Q Consensus 332 v~ 333 (788)
+.
T Consensus 175 ll 176 (598)
T PRK09111 175 VP 176 (598)
T ss_pred hh
Confidence 43
No 130
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=97.13 E-value=0.0042 Score=61.92 Aligned_cols=120 Identities=21% Similarity=0.221 Sum_probs=71.9
Q ss_pred CCcccchhcHHHHHHHHh---cCCCCcEEEEEEcCCCChHHHHHHHHHcccCcccccceeEEEEeCCCCChHHHHHHHHH
Q 003890 185 LDISEFERGREELFDLLI---EGPSGLSVVAILNGSGFDKTAFAADTYNNNHIKFYFDCLAWVRVSIAYDSGKILDDIIK 261 (788)
Q Consensus 185 ~~~vGr~~~~~~i~~~L~---~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~ 261 (788)
.+++|.|..++.|++-.. .+. ...-+-++|..|.|||++++++.+...-++ .--|.|.+.
T Consensus 27 ~~L~Gie~Qk~~l~~Nt~~Fl~G~-pannvLL~G~rGtGKSSlVkall~~y~~~G----LRlIev~k~------------ 89 (249)
T PF05673_consen 27 DDLIGIERQKEALIENTEQFLQGL-PANNVLLWGARGTGKSSLVKALLNEYADQG----LRLIEVSKE------------ 89 (249)
T ss_pred HHhcCHHHHHHHHHHHHHHHHcCC-CCcceEEecCCCCCHHHHHHHHHHHHhhcC----ceEEEECHH------------
Confidence 889999999988876542 232 355566799999999999999998321111 112222222
Q ss_pred HcCCCCCCcccccCCHHHHHHHHHHHhcCCcEEEEEeCCCC--ChhhHHHHhhhcCCC---CCCcEEE-EecCChHHHh
Q 003890 262 SVMPPSRVSVIIGEDYKLKKTILRDYLTNKKYFIVLDDVFN--DSDIWDDLEQVLPDN---QNGSRVL-ITVTDLDLLE 334 (788)
Q Consensus 262 ~l~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVLDdvw~--~~~~~~~l~~~l~~~---~~gskIi-vTTR~~~v~~ 334 (788)
+-.+...+.+.|+. +..||+|.+||+.- +......++..+..+ .+...+| .||-.+++..
T Consensus 90 -----------~L~~l~~l~~~l~~--~~~kFIlf~DDLsFe~~d~~yk~LKs~LeGgle~~P~NvliyATSNRRHLv~ 155 (249)
T PF05673_consen 90 -----------DLGDLPELLDLLRD--RPYKFILFCDDLSFEEGDTEYKALKSVLEGGLEARPDNVLIYATSNRRHLVP 155 (249)
T ss_pred -----------HhccHHHHHHHHhc--CCCCEEEEecCCCCCCCcHHHHHHHHHhcCccccCCCcEEEEEecchhhccc
Confidence 11222333333332 35799999999963 345567777776643 3444444 5554455443
No 131
>PRK10536 hypothetical protein; Provisional
Probab=97.12 E-value=0.0028 Score=63.91 Aligned_cols=55 Identities=13% Similarity=0.060 Sum_probs=40.9
Q ss_pred CCcccchhcHHHHHHHHhcCCCCcEEEEEEcCCCChHHHHHHHHHcccCcccccceeEE
Q 003890 185 LDISEFERGREELFDLLIEGPSGLSVVAILNGSGFDKTAFAADTYNNNHIKFYFDCLAW 243 (788)
Q Consensus 185 ~~~vGr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~w 243 (788)
..+.++.......+.+|.. ..++.+.|.+|.|||+||..+..+.-..+.|+.++-
T Consensus 55 ~~i~p~n~~Q~~~l~al~~----~~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIiI 109 (262)
T PRK10536 55 SPILARNEAQAHYLKAIES----KQLIFATGEAGCGKTWISAAKAAEALIHKDVDRIIV 109 (262)
T ss_pred ccccCCCHHHHHHHHHHhc----CCeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEEE
Confidence 4467888888888888865 348999999999999999998774322344554443
No 132
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=97.09 E-value=0.0022 Score=66.52 Aligned_cols=46 Identities=11% Similarity=0.068 Sum_probs=33.4
Q ss_pred CCcccchhcHHHHHHHHhc----------C---CCCcEEEEEEcCCCChHHHHHHHHHc
Q 003890 185 LDISEFERGREELFDLLIE----------G---PSGLSVVAILNGSGFDKTAFAADTYN 230 (788)
Q Consensus 185 ~~~vGr~~~~~~i~~~L~~----------~---~~~~~vi~I~G~gGiGKTtLa~~v~~ 230 (788)
..++|.+..+++|.+.... + .....-+.++|++|+||||+|+.+++
T Consensus 6 ~~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~ 64 (261)
T TIGR02881 6 SRMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGK 64 (261)
T ss_pred HHhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHH
Confidence 3588988887776544321 1 12355677999999999999999986
No 133
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.08 E-value=0.024 Score=68.53 Aligned_cols=133 Identities=14% Similarity=0.160 Sum_probs=74.9
Q ss_pred CCcccchhcHHHHHHHHhcC-------CCCcEEEEEEcCCCChHHHHHHHHHcccCcccccceeEEEEeCCCCChHHHHH
Q 003890 185 LDISEFERGREELFDLLIEG-------PSGLSVVAILNGSGFDKTAFAADTYNNNHIKFYFDCLAWVRVSIAYDSGKILD 257 (788)
Q Consensus 185 ~~~vGr~~~~~~i~~~L~~~-------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~ 257 (788)
..++|-+..++.|.+.+... .....++-++|+.|+|||+||+.+.+ .+-+.-...+-++.+.-.+...+.+
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~--~l~~~~~~~~~~d~s~~~~~~~~~~ 586 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALAS--YFFGSEDAMIRLDMSEYMEKHTVSK 586 (821)
T ss_pred CcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHH--HhcCCccceEEEEchhccccccHHH
Confidence 56899999999998888532 22345677899999999999999887 2211112234444443222211111
Q ss_pred HHHHHcCCCCCCcccccCCHHHHHHHHHHHhcCCc-EEEEEeCCCC-ChhhHHHHhhhcCCC-----------CCCcEEE
Q 003890 258 DIIKSVMPPSRVSVIIGEDYKLKKTILRDYLTNKK-YFIVLDDVFN-DSDIWDDLEQVLPDN-----------QNGSRVL 324 (788)
Q Consensus 258 ~il~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~kr-~LlVLDdvw~-~~~~~~~l~~~l~~~-----------~~gskIi 324 (788)
+ ++.+... ...+. ...+.+.++.++ .+++||++.. +++.++.+...+..+ ...+-||
T Consensus 587 -l---~g~~~gy---vg~~~---~~~l~~~~~~~p~~VvllDeieka~~~v~~~Llq~le~g~~~d~~g~~v~~~~~i~I 656 (821)
T CHL00095 587 -L---IGSPPGY---VGYNE---GGQLTEAVRKKPYTVVLFDEIEKAHPDIFNLLLQILDDGRLTDSKGRTIDFKNTLII 656 (821)
T ss_pred -h---cCCCCcc---cCcCc---cchHHHHHHhCCCeEEEECChhhCCHHHHHHHHHHhccCceecCCCcEEecCceEEE
Confidence 1 1111100 01111 113344454444 5889999963 456777777766543 2345567
Q ss_pred EecCC
Q 003890 325 ITVTD 329 (788)
Q Consensus 325 vTTR~ 329 (788)
+||..
T Consensus 657 ~Tsn~ 661 (821)
T CHL00095 657 MTSNL 661 (821)
T ss_pred EeCCc
Confidence 77664
No 134
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=97.07 E-value=0.0033 Score=74.77 Aligned_cols=146 Identities=9% Similarity=-0.020 Sum_probs=77.7
Q ss_pred CCCCCCcccchhcHHHHHHHHhcCCCCcEEEEEEcCCCChHHHHHHHHHcccCcccccceeEEEEeCCCCChHHHHHHHH
Q 003890 181 GQPRLDISEFERGREELFDLLIEGPSGLSVVAILNGSGFDKTAFAADTYNNNHIKFYFDCLAWVRVSIAYDSGKILDDII 260 (788)
Q Consensus 181 ~~~~~~~vGr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il 260 (788)
+..|.++||.+..++.|..++..+. -...+-++|..|+||||+|+.+.+...-...... ..+..-...+.|.
T Consensus 11 P~~f~eiiGqe~v~~~L~~~i~~~r-i~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~-------~pCg~C~sC~~~~ 82 (824)
T PRK07764 11 PATFAEVIGQEHVTEPLSTALDSGR-INHAYLFSGPRGCGKTSSARILARSLNCVEGPTS-------TPCGECDSCVALA 82 (824)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHhCC-CCceEEEECCCCCCHHHHHHHHHHHhCcccCCCC-------CCCcccHHHHHHH
Confidence 3344789999999999999987654 2356789999999999999998763211111000 0001001111111
Q ss_pred HHcCCCCCCccc---ccCCHHHHHHHHHH----HhcCCcEEEEEeCCCC-ChhhHHHHhhhcCCCCCCcEEEEec-CChH
Q 003890 261 KSVMPPSRVSVI---IGEDYKLKKTILRD----YLTNKKYFIVLDDVFN-DSDIWDDLEQVLPDNQNGSRVLITV-TDLD 331 (788)
Q Consensus 261 ~~l~~~~~~~~~---~~~~~~~~~~~l~~----~l~~kr~LlVLDdvw~-~~~~~~~l~~~l~~~~~gskIivTT-R~~~ 331 (788)
..-......... .....+++.+...+ -..+++-++|+|++.. ....++.|...+..-...+.+|++| ....
T Consensus 83 ~g~~~~~dv~eidaas~~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~fIl~tt~~~k 162 (824)
T PRK07764 83 PGGPGSLDVTEIDAASHGGVDDARELRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIFATTEPDK 162 (824)
T ss_pred cCCCCCCcEEEecccccCCHHHHHHHHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhh
Confidence 110000000000 11123333221111 1235556788999963 4577888888887766666666555 4444
Q ss_pred HHh
Q 003890 332 LLE 334 (788)
Q Consensus 332 v~~ 334 (788)
+..
T Consensus 163 Ll~ 165 (824)
T PRK07764 163 VIG 165 (824)
T ss_pred hhH
Confidence 443
No 135
>CHL00181 cbbX CbbX; Provisional
Probab=97.05 E-value=0.0055 Score=64.18 Aligned_cols=45 Identities=9% Similarity=0.090 Sum_probs=31.4
Q ss_pred CcccchhcHHHHHHHHh---cC----------CCCcEEEEEEcCCCChHHHHHHHHHc
Q 003890 186 DISEFERGREELFDLLI---EG----------PSGLSVVAILNGSGFDKTAFAADTYN 230 (788)
Q Consensus 186 ~~vGr~~~~~~i~~~L~---~~----------~~~~~vi~I~G~gGiGKTtLa~~v~~ 230 (788)
+++|.+..+++|.++.. -. ......+.++|.+|+||||+|+.++.
T Consensus 24 ~l~Gl~~vK~~i~e~~~~~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~ 81 (287)
T CHL00181 24 ELVGLAPVKTRIREIAALLLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMAD 81 (287)
T ss_pred hcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHH
Confidence 57888777776655431 11 11223477899999999999999977
No 136
>COG3899 Predicted ATPase [General function prediction only]
Probab=97.02 E-value=0.014 Score=70.36 Aligned_cols=49 Identities=18% Similarity=0.133 Sum_probs=40.4
Q ss_pred cccchhcHHHHHHHHhcC-CCCcEEEEEEcCCCChHHHHHHHHHcccCcccc
Q 003890 187 ISEFERGREELFDLLIEG-PSGLSVVAILNGSGFDKTAFAADTYNNNHIKFY 237 (788)
Q Consensus 187 ~vGr~~~~~~i~~~L~~~-~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~ 237 (788)
++||+.+.+.+...+... .....++.+.|..|||||++++.|.. .+.+.
T Consensus 2 l~GRe~ev~~Ll~~f~~v~~g~~~~~lv~G~sGIGKsalv~ev~~--~i~~~ 51 (849)
T COG3899 2 LYGRETELAQLLAAFDRVSKGRGEVVLVAGESGIGKSALVNEVHK--PITQQ 51 (849)
T ss_pred CCchHhHHHHHHHHHHHHhCCCeEEEEEeecCCCcHHHHHHHHHH--HHhcc
Confidence 789999999999988653 23466999999999999999999998 44443
No 137
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.01 E-value=0.0016 Score=74.90 Aligned_cols=58 Identities=12% Similarity=0.022 Sum_probs=45.4
Q ss_pred cccccCCCCCCCCcccchhcHHHHHHHHhcCC---CCcEEEEEEcCCCChHHHHHHHHHcc
Q 003890 174 IIRLLSEGQPRLDISEFERGREELFDLLIEGP---SGLSVVAILNGSGFDKTAFAADTYNN 231 (788)
Q Consensus 174 ~~~~~~~~~~~~~~vGr~~~~~~i~~~L~~~~---~~~~vi~I~G~gGiGKTtLa~~v~~~ 231 (788)
++.....|..+.+++|-+..++++..++.... ...+++.|+|++|+||||+++.++..
T Consensus 73 pW~eKyrP~~ldel~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~ 133 (637)
T TIGR00602 73 PWVEKYKPETQHELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKE 133 (637)
T ss_pred chHHHhCCCCHHHhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 34444444455889999999999999987642 23467999999999999999999983
No 138
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=96.99 E-value=0.0019 Score=77.05 Aligned_cols=117 Identities=15% Similarity=0.198 Sum_probs=68.4
Q ss_pred CCcccchhcHHHHHHHHhcC-------CCCcEEEEEEcCCCChHHHHHHHHHcccCcccccceeEEEEeCCCCChHHHHH
Q 003890 185 LDISEFERGREELFDLLIEG-------PSGLSVVAILNGSGFDKTAFAADTYNNNHIKFYFDCLAWVRVSIAYDSGKILD 257 (788)
Q Consensus 185 ~~~vGr~~~~~~i~~~L~~~-------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~ 257 (788)
..++|-+..++.|.+.+... .....++-++|+.|+|||+||+.+.. .. +...+.++.++-.+...
T Consensus 454 ~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~--~l---~~~~~~~d~se~~~~~~--- 525 (731)
T TIGR02639 454 AKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAE--AL---GVHLERFDMSEYMEKHT--- 525 (731)
T ss_pred cceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHH--Hh---cCCeEEEeCchhhhccc---
Confidence 66889999999988888632 12345788999999999999999988 33 22345555544322111
Q ss_pred HHHHHcCCCCCCcccccCCHHHHHHHHHHHhcC-CcEEEEEeCCCC-ChhhHHHHhhhcCC
Q 003890 258 DIIKSVMPPSRVSVIIGEDYKLKKTILRDYLTN-KKYFIVLDDVFN-DSDIWDDLEQVLPD 316 (788)
Q Consensus 258 ~il~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~-kr~LlVLDdvw~-~~~~~~~l~~~l~~ 316 (788)
+..-++..... ...+. ...+.+.++. ..-+++||++.. +++.++.+...+..
T Consensus 526 -~~~lig~~~gy---vg~~~---~~~l~~~~~~~p~~VvllDEieka~~~~~~~Ll~~ld~ 579 (731)
T TIGR02639 526 -VSRLIGAPPGY---VGFEQ---GGLLTEAVRKHPHCVLLLDEIEKAHPDIYNILLQVMDY 579 (731)
T ss_pred -HHHHhcCCCCC---cccch---hhHHHHHHHhCCCeEEEEechhhcCHHHHHHHHHhhcc
Confidence 11112211110 01111 1223334433 345999999963 45677777766653
No 139
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=96.96 E-value=0.0018 Score=65.04 Aligned_cols=121 Identities=10% Similarity=0.146 Sum_probs=68.5
Q ss_pred cccc-hhcHHHHHHHHhcC-CCCcEEEEEEcCCCChHHHHHHHHHcccCcccccce--eEEEEeCCCCChHHHHHHHHHH
Q 003890 187 ISEF-ERGREELFDLLIEG-PSGLSVVAILNGSGFDKTAFAADTYNNNHIKFYFDC--LAWVRVSIAYDSGKILDDIIKS 262 (788)
Q Consensus 187 ~vGr-~~~~~~i~~~L~~~-~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~--~~wv~vs~~~~~~~~~~~il~~ 262 (788)
++|- .+..-...+.+... +.....+-|+|..|+|||.|.+++++ ++.+..+. ++|+ +..+....+...
T Consensus 11 v~g~~N~~a~~~~~~ia~~~~~~~~~l~l~G~~G~GKTHLL~Ai~~--~~~~~~~~~~v~y~------~~~~f~~~~~~~ 82 (219)
T PF00308_consen 11 VVGESNELAYAAAKAIAENPGERYNPLFLYGPSGLGKTHLLQAIAN--EAQKQHPGKRVVYL------SAEEFIREFADA 82 (219)
T ss_dssp --TTTTHHHHHHHHHHHHSTTTSSSEEEEEESTTSSHHHHHHHHHH--HHHHHCTTS-EEEE------EHHHHHHHHHHH
T ss_pred CcCCcHHHHHHHHHHHHhcCCCCCCceEEECCCCCCHHHHHHHHHH--HHHhccccccceee------cHHHHHHHHHHH
Confidence 4574 33334445545443 33455688999999999999999999 44443332 5564 455666666665
Q ss_pred cCCCCCCcccccCCHHHHHHHHHHHhcCCcEEEEEeCCCC--ChhhHHHH-hhhcCC-CCCCcEEEEecCC
Q 003890 263 VMPPSRVSVIIGEDYKLKKTILRDYLTNKKYFIVLDDVFN--DSDIWDDL-EQVLPD-NQNGSRVLITVTD 329 (788)
Q Consensus 263 l~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVLDdvw~--~~~~~~~l-~~~l~~-~~~gskIivTTR~ 329 (788)
+.... . ..+++.+++ -=+|++||+.. ....|... ...+.. ...|-+||+|++.
T Consensus 83 ~~~~~---------~----~~~~~~~~~-~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~ 139 (219)
T PF00308_consen 83 LRDGE---------I----EEFKDRLRS-ADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDR 139 (219)
T ss_dssp HHTTS---------H----HHHHHHHCT-SSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS
T ss_pred HHccc---------c----hhhhhhhhc-CCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCC
Confidence 54321 1 234444443 34788999962 22333322 222221 1346689999874
No 140
>PRK08084 DNA replication initiation factor; Provisional
Probab=96.94 E-value=0.0026 Score=64.73 Aligned_cols=38 Identities=5% Similarity=0.118 Sum_probs=27.7
Q ss_pred cEEEEEEcCCCChHHHHHHHHHcccCcccccceeEEEEeC
Q 003890 208 LSVVAILNGSGFDKTAFAADTYNNNHIKFYFDCLAWVRVS 247 (788)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs 247 (788)
...+.|+|+.|+|||+|++.+++. ....-..+.|+.+.
T Consensus 45 ~~~l~l~Gp~G~GKThLl~a~~~~--~~~~~~~v~y~~~~ 82 (235)
T PRK08084 45 SGYIYLWSREGAGRSHLLHAACAE--LSQRGRAVGYVPLD 82 (235)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH--HHhCCCeEEEEEHH
Confidence 467899999999999999999983 33222345666553
No 141
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=96.94 E-value=0.0023 Score=64.88 Aligned_cols=48 Identities=8% Similarity=0.023 Sum_probs=31.5
Q ss_pred CCCcc-cchhcHHHHHHHHhcCCCCcEEEEEEcCCCChHHHHHHHHHcc
Q 003890 184 RLDIS-EFERGREELFDLLIEGPSGLSVVAILNGSGFDKTAFAADTYNN 231 (788)
Q Consensus 184 ~~~~v-Gr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 231 (788)
+++++ |.+......+..+.........+.|+|..|+|||+||+.+++.
T Consensus 17 ~d~f~~~~~~~~~~~l~~~~~~~~~~~~~~l~G~~G~GKT~La~ai~~~ 65 (227)
T PRK08903 17 FDNFVAGENAELVARLRELAAGPVADRFFYLWGEAGSGRSHLLQALVAD 65 (227)
T ss_pred hcccccCCcHHHHHHHHHHHhccCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 35555 5544443333333332234567889999999999999999984
No 142
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=96.94 E-value=0.0071 Score=63.34 Aligned_cols=125 Identities=14% Similarity=0.129 Sum_probs=63.8
Q ss_pred CcccchhcHHHHHHHHh---cC----------CCCcEEEEEEcCCCChHHHHHHHHHcccCcccccceeEEEEeCCCCCh
Q 003890 186 DISEFERGREELFDLLI---EG----------PSGLSVVAILNGSGFDKTAFAADTYNNNHIKFYFDCLAWVRVSIAYDS 252 (788)
Q Consensus 186 ~~vGr~~~~~~i~~~L~---~~----------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~ 252 (788)
.++|.+..+++|.++.. .. .....-+.++|.+|+||||+|+.+..-..-.+.....-|+.++.
T Consensus 23 ~l~Gl~~vk~~i~e~~~~~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~---- 98 (284)
T TIGR02880 23 ELIGLKPVKTRIREIAALLLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTR---- 98 (284)
T ss_pred hccCHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecH----
Confidence 47787777777655432 11 01122577999999999999977765211111121223444442
Q ss_pred HHHHHHHHHHcCCCCCCcccccCCHHHHHHHHHHHhcCCcEEEEEeCCCC----------ChhhHHHHhhhcCCCCCCcE
Q 003890 253 GKILDDIIKSVMPPSRVSVIIGEDYKLKKTILRDYLTNKKYFIVLDDVFN----------DSDIWDDLEQVLPDNQNGSR 322 (788)
Q Consensus 253 ~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVLDdvw~----------~~~~~~~l~~~l~~~~~gsk 322 (788)
. +++..+.+.. .......+.+. ..-+|++|++.. ..+.++.+...+.....+.+
T Consensus 99 ~----~l~~~~~g~~---------~~~~~~~~~~a---~~gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~ 162 (284)
T TIGR02880 99 D----DLVGQYIGHT---------APKTKEILKRA---MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLV 162 (284)
T ss_pred H----HHhHhhcccc---------hHHHHHHHHHc---cCcEEEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCEE
Confidence 1 2222222211 11222222222 335888999840 12234555555555555667
Q ss_pred EEEecCCh
Q 003890 323 VLITVTDL 330 (788)
Q Consensus 323 IivTTR~~ 330 (788)
||.+|...
T Consensus 163 vI~a~~~~ 170 (284)
T TIGR02880 163 VILAGYKD 170 (284)
T ss_pred EEEeCCcH
Confidence 77776644
No 143
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.93 E-value=0.0051 Score=70.21 Aligned_cols=50 Identities=16% Similarity=0.003 Sum_probs=39.5
Q ss_pred CCCCCCcccchhcHHHHHHHHhcCCCCcEEEEEEcCCCChHHHHHHHHHcc
Q 003890 181 GQPRLDISEFERGREELFDLLIEGPSGLSVVAILNGSGFDKTAFAADTYNN 231 (788)
Q Consensus 181 ~~~~~~~vGr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 231 (788)
+..+.+++|-+..++.|.+.+..+. -...+-++|..|+||||+|+.+.+.
T Consensus 12 P~sf~dIiGQe~v~~~L~~ai~~~r-i~ha~Lf~GPpG~GKTtiArilAk~ 61 (624)
T PRK14959 12 PQTFAEVAGQETVKAILSRAAQENR-VAPAYLFSGTRGVGKTTIARIFAKA 61 (624)
T ss_pred CCCHHHhcCCHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHh
Confidence 3444789998888888888886543 2467778999999999999998873
No 144
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=96.93 E-value=0.0082 Score=61.85 Aligned_cols=104 Identities=13% Similarity=0.132 Sum_probs=75.1
Q ss_pred cHHHHHHHHhcCC-CCcEEEEEEcCCCChHHHHHHHHHcccCc-----ccccceeEEEEeCCCCChHHHHHHHHHHcCCC
Q 003890 193 GREELFDLLIEGP-SGLSVVAILNGSGFDKTAFAADTYNNNHI-----KFYFDCLAWVRVSIAYDSGKILDDIIKSVMPP 266 (788)
Q Consensus 193 ~~~~i~~~L~~~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~-----~~~F~~~~wv~vs~~~~~~~~~~~il~~l~~~ 266 (788)
..+.+.++|..+. ....-+.|||.+|+|||++++......-. ...+ .++.|.....++...+...|+..++.+
T Consensus 45 ~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~-PVv~vq~P~~p~~~~~Y~~IL~~lgaP 123 (302)
T PF05621_consen 45 ALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERI-PVVYVQMPPEPDERRFYSAILEALGAP 123 (302)
T ss_pred HHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccc-cEEEEecCCCCChHHHHHHHHHHhCcc
Confidence 3455555555442 35678999999999999999998864211 1122 377778888899999999999999988
Q ss_pred CCCcccccCCHHHHHHHHHHHhcC-CcEEEEEeCCC
Q 003890 267 SRVSVIIGEDYKLKKTILRDYLTN-KKYFIVLDDVF 301 (788)
Q Consensus 267 ~~~~~~~~~~~~~~~~~l~~~l~~-kr~LlVLDdvw 301 (788)
.. ...+.......+...++. +-=+||+|.+.
T Consensus 124 ~~----~~~~~~~~~~~~~~llr~~~vrmLIIDE~H 155 (302)
T PF05621_consen 124 YR----PRDRVAKLEQQVLRLLRRLGVRMLIIDEFH 155 (302)
T ss_pred cC----CCCCHHHHHHHHHHHHHHcCCcEEEeechH
Confidence 75 445556666666667754 44588999996
No 145
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.93 E-value=0.0071 Score=69.75 Aligned_cols=48 Identities=19% Similarity=0.089 Sum_probs=39.6
Q ss_pred CCCCCcccchhcHHHHHHHHhcCCCCcEEEEEEcCCCChHHHHHHHHHc
Q 003890 182 QPRLDISEFERGREELFDLLIEGPSGLSVVAILNGSGFDKTAFAADTYN 230 (788)
Q Consensus 182 ~~~~~~vGr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 230 (788)
..|.+++|-+..++.+.+.+..+. -...+-++|..|+||||+|+.+.+
T Consensus 13 ~~f~~iiGq~~v~~~L~~~i~~~~-~~hayLf~Gp~G~GKtt~A~~lak 60 (576)
T PRK14965 13 QTFSDLTGQEHVSRTLQNAIDTGR-VAHAFLFTGARGVGKTSTARILAK 60 (576)
T ss_pred CCHHHccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHH
Confidence 344889999999999999887653 245667899999999999998876
No 146
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=96.92 E-value=0.0043 Score=68.14 Aligned_cols=46 Identities=20% Similarity=0.099 Sum_probs=38.1
Q ss_pred CCcccchhcHHHHHHHHhcC-----------CCCcEEEEEEcCCCChHHHHHHHHHc
Q 003890 185 LDISEFERGREELFDLLIEG-----------PSGLSVVAILNGSGFDKTAFAADTYN 230 (788)
Q Consensus 185 ~~~vGr~~~~~~i~~~L~~~-----------~~~~~vi~I~G~gGiGKTtLa~~v~~ 230 (788)
.++.|++..++++.+.+... -...+-|-++|++|+|||++|+.+++
T Consensus 131 ~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~ 187 (389)
T PRK03992 131 EDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAH 187 (389)
T ss_pred HHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHH
Confidence 77899999999999877421 12356688999999999999999998
No 147
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=96.90 E-value=0.032 Score=64.89 Aligned_cols=121 Identities=19% Similarity=0.229 Sum_probs=73.8
Q ss_pred CCcccchhcHHHHHHHHhcC-------CCCcEEEEEEcCCCChHHHHHHHHHcccCcccccceeEEEEeCCCCChHHHHH
Q 003890 185 LDISEFERGREELFDLLIEG-------PSGLSVVAILNGSGFDKTAFAADTYNNNHIKFYFDCLAWVRVSIAYDSGKILD 257 (788)
Q Consensus 185 ~~~vGr~~~~~~i~~~L~~~-------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~ 257 (788)
..++|-+..++.+.+.+... .....+.-.+|+.|||||.||+.+... .-+.=+..+-++.|+-... +
T Consensus 491 ~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~--Lfg~e~aliR~DMSEy~Ek----H 564 (786)
T COG0542 491 KRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEA--LFGDEQALIRIDMSEYMEK----H 564 (786)
T ss_pred cceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHH--hcCCCccceeechHHHHHH----H
Confidence 45899999999999888542 245678888999999999999998872 2111122333333332111 1
Q ss_pred HHHHHcCCCCCCcccccCCHHHHHHHHHHHhcCCcE-EEEEeCCCC-ChhhHHHHhhhcCCC
Q 003890 258 DIIKSVMPPSRVSVIIGEDYKLKKTILRDYLTNKKY-FIVLDDVFN-DSDIWDDLEQVLPDN 317 (788)
Q Consensus 258 ~il~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~-LlVLDdvw~-~~~~~~~l~~~l~~~ 317 (788)
.+-+-++.+.. -..-++ -..|-+..+.++| .|.||+|.- +++.++-|...|.++
T Consensus 565 sVSrLIGaPPG-----YVGyee-GG~LTEaVRr~PySViLlDEIEKAHpdV~nilLQVlDdG 620 (786)
T COG0542 565 SVSRLIGAPPG-----YVGYEE-GGQLTEAVRRKPYSVILLDEIEKAHPDVFNLLLQVLDDG 620 (786)
T ss_pred HHHHHhCCCCC-----Cceecc-ccchhHhhhcCCCeEEEechhhhcCHHHHHHHHHHhcCC
Confidence 11122222221 111111 3445566777877 777999963 567888888887754
No 148
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=96.89 E-value=0.0099 Score=64.35 Aligned_cols=45 Identities=16% Similarity=0.082 Sum_probs=37.6
Q ss_pred CCcccchhcHHHHHHHHhcCCCCcEEEEEEcCCCChHHHHHHHHHc
Q 003890 185 LDISEFERGREELFDLLIEGPSGLSVVAILNGSGFDKTAFAADTYN 230 (788)
Q Consensus 185 ~~~vGr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 230 (788)
.+++|-+..++.+.+.+..+. -...+-++|+.|+||+|+|..+..
T Consensus 19 ~~iiGq~~~~~~L~~~~~~~r-l~HA~Lf~Gp~G~GK~~lA~~~A~ 63 (365)
T PRK07471 19 TALFGHAAAEAALLDAYRSGR-LHHAWLIGGPQGIGKATLAYRMAR 63 (365)
T ss_pred hhccChHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHH
Confidence 789999999999999887764 245688999999999999877665
No 149
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.89 E-value=0.0085 Score=69.37 Aligned_cols=49 Identities=12% Similarity=-0.063 Sum_probs=40.1
Q ss_pred CCCCCCcccchhcHHHHHHHHhcCCCCcEEEEEEcCCCChHHHHHHHHHc
Q 003890 181 GQPRLDISEFERGREELFDLLIEGPSGLSVVAILNGSGFDKTAFAADTYN 230 (788)
Q Consensus 181 ~~~~~~~vGr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 230 (788)
+..+.+++|-+...+.+.+++..+. -...+-++|..|+||||+|+.+..
T Consensus 13 P~~f~~viGq~~~~~~L~~~i~~~~-l~hayLf~Gp~G~GKtt~A~~lAk 61 (614)
T PRK14971 13 PSTFESVVGQEALTTTLKNAIATNK-LAHAYLFCGPRGVGKTTCARIFAK 61 (614)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCC-CCeeEEEECCCCCCHHHHHHHHHH
Confidence 3445889999999999999997654 345678999999999999988766
No 150
>PRK08181 transposase; Validated
Probab=96.88 E-value=0.0022 Score=66.15 Aligned_cols=99 Identities=15% Similarity=0.113 Sum_probs=52.6
Q ss_pred EEEEEEcCCCChHHHHHHHHHcccCcccccceeEEEEeCCCCChHHHHHHHHHHcCCCCCCcccccCCHHHHHHHHHHHh
Q 003890 209 SVVAILNGSGFDKTAFAADTYNNNHIKFYFDCLAWVRVSIAYDSGKILDDIIKSVMPPSRVSVIIGEDYKLKKTILRDYL 288 (788)
Q Consensus 209 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~~l 288 (788)
.-+.++|.+|+|||.||..+.+ +.....-.++|++ ..++...+..... ..+.+... +.+
T Consensus 107 ~nlll~Gp~GtGKTHLa~Aia~--~a~~~g~~v~f~~------~~~L~~~l~~a~~---------~~~~~~~l----~~l 165 (269)
T PRK08181 107 ANLLLFGPPGGGKSHLAAAIGL--ALIENGWRVLFTR------TTDLVQKLQVARR---------ELQLESAI----AKL 165 (269)
T ss_pred ceEEEEecCCCcHHHHHHHHHH--HHHHcCCceeeee------HHHHHHHHHHHHh---------CCcHHHHH----HHH
Confidence 3488999999999999999987 3333323355553 3445555533211 11122222 222
Q ss_pred cCCcEEEEEeCCCC-ChhhH--HHHhhhcCCCCCCcEEEEecCC
Q 003890 289 TNKKYFIVLDDVFN-DSDIW--DDLEQVLPDNQNGSRVLITVTD 329 (788)
Q Consensus 289 ~~kr~LlVLDdvw~-~~~~~--~~l~~~l~~~~~gskIivTTR~ 329 (788)
.+-=|||+||+.. ....| +.+...+.....+..+||||..
T Consensus 166 -~~~dLLIIDDlg~~~~~~~~~~~Lf~lin~R~~~~s~IiTSN~ 208 (269)
T PRK08181 166 -DKFDLLILDDLAYVTKDQAETSVLFELISARYERRSILITANQ 208 (269)
T ss_pred -hcCCEEEEeccccccCCHHHHHHHHHHHHHHHhCCCEEEEcCC
Confidence 2344999999952 11222 2233333221112358888875
No 151
>PRK05642 DNA replication initiation factor; Validated
Probab=96.87 E-value=0.0032 Score=64.01 Aligned_cols=37 Identities=5% Similarity=0.093 Sum_probs=27.0
Q ss_pred cEEEEEEcCCCChHHHHHHHHHcccCcccccceeEEEEe
Q 003890 208 LSVVAILNGSGFDKTAFAADTYNNNHIKFYFDCLAWVRV 246 (788)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v 246 (788)
...+.|+|..|+|||.|++.+++ +....-..++|++.
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~--~~~~~~~~v~y~~~ 81 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACL--RFEQRGEPAVYLPL 81 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHH--HHHhCCCcEEEeeH
Confidence 46789999999999999999987 33322234666654
No 152
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.84 E-value=0.00013 Score=72.47 Aligned_cols=99 Identities=20% Similarity=0.239 Sum_probs=79.9
Q ss_pred ccccceEEecCCCCchhhhhhhhhhhcCCccccEEEecCCCCCCCCccccCCCCccEEEecCCCCcccCh--hhcCCCCC
Q 003890 519 DIYLQSFLNHSSESDHLALIDCENFCEKFKHLRILNLGSAVLVQFPPGLENLFHLKYLKLNIPSLKCLPS--LLCTLLNL 596 (788)
Q Consensus 519 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~lp~--~i~~L~~L 596 (788)
+.+.+.|.+.|+..+ ++ ....+|+.|++|.|+-|.|+.+ ..+..+++|+.|.|+.|.|..+.+ .+.+|++|
T Consensus 18 l~~vkKLNcwg~~L~-DI-----sic~kMp~lEVLsLSvNkIssL-~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsL 90 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLD-DI-----SICEKMPLLEVLSLSVNKISSL-APLQRCTRLKELYLRKNCIESLDELEYLKNLPSL 90 (388)
T ss_pred HHHhhhhcccCCCcc-HH-----HHHHhcccceeEEeeccccccc-hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchh
Confidence 667788888888863 22 6778999999999999999887 468889999999999999887754 57899999
Q ss_pred cEEEccCC-CCcccch-----hhhcccccceeec
Q 003890 597 QTLEMPSS-YVDQSPE-----DIWMMQKLMHLNF 624 (788)
Q Consensus 597 ~~L~L~~~-~l~~lp~-----~l~~L~~L~~L~l 624 (788)
++|.|..| ....-+. -+.-||||+.||-
T Consensus 91 r~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLDn 124 (388)
T KOG2123|consen 91 RTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLDN 124 (388)
T ss_pred hhHhhccCCcccccchhHHHHHHHHcccchhccC
Confidence 99999988 3443332 2567899999974
No 153
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=96.83 E-value=0.0028 Score=64.88 Aligned_cols=92 Identities=13% Similarity=0.241 Sum_probs=56.6
Q ss_pred cEEEEEEcCCCChHHHHHHHHHcccCcccccce-eEEEEeCCCCC-hHHHHHHHHHHcCCCCCC---cccccCCH-----
Q 003890 208 LSVVAILNGSGFDKTAFAADTYNNNHIKFYFDC-LAWVRVSIAYD-SGKILDDIIKSVMPPSRV---SVIIGEDY----- 277 (788)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~-~~wv~vs~~~~-~~~~~~~il~~l~~~~~~---~~~~~~~~----- 277 (788)
-..++|+|..|+|||||++.+++ .++.+|+. ++++-+++... +.++.+++...-...... ...+....
T Consensus 69 GQr~~If~~~G~GKTtLa~~i~~--~i~~~~~~~~V~~~iGer~~Ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~~ 146 (274)
T cd01133 69 GGKIGLFGGAGVGKTVLIMELIN--NIAKAHGGYSVFAGVGERTREGNDLYHEMKESGVLSKTALVYGQMNEPPGARARV 146 (274)
T ss_pred CCEEEEecCCCCChhHHHHHHHH--HHHhcCCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHH
Confidence 35789999999999999999999 56556655 66677777654 455666555431111000 00011011
Q ss_pred HHHHHHHHHHh--c-CCcEEEEEeCCC
Q 003890 278 KLKKTILRDYL--T-NKKYFIVLDDVF 301 (788)
Q Consensus 278 ~~~~~~l~~~l--~-~kr~LlVLDdvw 301 (788)
-...-.+.+++ + |+.+|+|+||+-
T Consensus 147 ~~~a~~~AEyfr~~~g~~Vl~~~Dslt 173 (274)
T cd01133 147 ALTGLTMAEYFRDEEGQDVLLFIDNIF 173 (274)
T ss_pred HHHHHHHHHHHHHhcCCeEEEEEeChh
Confidence 11222355555 3 899999999995
No 154
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=96.82 E-value=0.012 Score=66.35 Aligned_cols=123 Identities=11% Similarity=-0.008 Sum_probs=74.4
Q ss_pred CCCCCCcccchhcHHHHHHHHhcCCCCcEEEEEEcCCCChHHHHHHHHHcccC--cccc----------------cc-ee
Q 003890 181 GQPRLDISEFERGREELFDLLIEGPSGLSVVAILNGSGFDKTAFAADTYNNNH--IKFY----------------FD-CL 241 (788)
Q Consensus 181 ~~~~~~~vGr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~--~~~~----------------F~-~~ 241 (788)
|..+.+++|-+..++.+...+..+. -..+.-++|..|+||||+|+.+....- -... +. .+
T Consensus 10 P~~fdeiiGqe~v~~~L~~~I~~gr-l~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~~~~h~dv 88 (535)
T PRK08451 10 PKHFDELIGQESVSKTLSLALDNNR-LAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSALENRHIDI 88 (535)
T ss_pred CCCHHHccCcHHHHHHHHHHHHcCC-CCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhhcCCCeE
Confidence 3445889999999999999887654 345668999999999999997765210 0000 00 01
Q ss_pred EEEEeCCCCChHHHHHHHHHHcCCCCCCcccccCCHHHHHHHHHHH----hcCCcEEEEEeCCCC-ChhhHHHHhhhcCC
Q 003890 242 AWVRVSIAYDSGKILDDIIKSVMPPSRVSVIIGEDYKLKKTILRDY----LTNKKYFIVLDDVFN-DSDIWDDLEQVLPD 316 (788)
Q Consensus 242 ~wv~vs~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~~----l~~kr~LlVLDdvw~-~~~~~~~l~~~l~~ 316 (788)
+.+..+.. ...+++.+.+... ..+++-++|+|++.. +.+..+.+...+..
T Consensus 89 ~eldaas~-------------------------~gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt~~A~NALLK~LEE 143 (535)
T PRK08451 89 IEMDAASN-------------------------RGIDDIRELIEQTKYKPSMARFKIFIIDEVHMLTKEAFNALLKTLEE 143 (535)
T ss_pred EEeccccc-------------------------cCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHHhh
Confidence 11111111 1123333333221 124566889999963 45667778777766
Q ss_pred CCCCcEEEEecCC
Q 003890 317 NQNGSRVLITVTD 329 (788)
Q Consensus 317 ~~~gskIivTTR~ 329 (788)
..+.+++|++|.+
T Consensus 144 pp~~t~FIL~ttd 156 (535)
T PRK08451 144 PPSYVKFILATTD 156 (535)
T ss_pred cCCceEEEEEECC
Confidence 5667777766655
No 155
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.82 E-value=0.0097 Score=68.91 Aligned_cols=141 Identities=11% Similarity=-0.002 Sum_probs=76.0
Q ss_pred CCCCCcccchhcHHHHHHHHhcCCCCcEEEEEEcCCCChHHHHHHHHHcccCcccccceeEEEEeCCCCChHHHHHHHHH
Q 003890 182 QPRLDISEFERGREELFDLLIEGPSGLSVVAILNGSGFDKTAFAADTYNNNHIKFYFDCLAWVRVSIAYDSGKILDDIIK 261 (788)
Q Consensus 182 ~~~~~~vGr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~ 261 (788)
..+.+++|.+..+..+..++..+. -...+-++|..|+||||+|+.+...---. .++.. ....+..-...+.+..
T Consensus 13 ~~f~~liGq~~i~~~L~~~l~~~r-l~~a~Lf~Gp~G~GKttlA~~lAk~L~c~-~~~~~----~~~~Cg~C~~C~~i~~ 86 (620)
T PRK14948 13 QRFDELVGQEAIATTLKNALISNR-IAPAYLFTGPRGTGKTSSARILAKSLNCL-NSDKP----TPEPCGKCELCRAIAA 86 (620)
T ss_pred CcHhhccChHHHHHHHHHHHHcCC-CCceEEEECCCCCChHHHHHHHHHHhcCC-CcCCC----CCCCCcccHHHHHHhc
Confidence 344789999999999999887653 23567789999999999999988742111 11000 0011111222222222
Q ss_pred HcCCCCCCccc-ccCCHHHHHHHHHHH----hcCCcEEEEEeCCCC-ChhhHHHHhhhcCCCCCCcEEEEecC
Q 003890 262 SVMPPSRVSVI-IGEDYKLKKTILRDY----LTNKKYFIVLDDVFN-DSDIWDDLEQVLPDNQNGSRVLITVT 328 (788)
Q Consensus 262 ~l~~~~~~~~~-~~~~~~~~~~~l~~~----l~~kr~LlVLDdvw~-~~~~~~~l~~~l~~~~~gskIivTTR 328 (788)
........... .....+++.+.+... ..+++-++|+|++.. ....++.|...+........+|++|.
T Consensus 87 g~h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t~ 159 (620)
T PRK14948 87 GNALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATT 159 (620)
T ss_pred CCCccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEeC
Confidence 21111000000 112233333333221 124556889999963 45677888887776555565555444
No 156
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=96.82 E-value=0.0068 Score=70.27 Aligned_cols=49 Identities=16% Similarity=-0.002 Sum_probs=40.0
Q ss_pred CCCCCCcccchhcHHHHHHHHhcCCCCcEEEEEEcCCCChHHHHHHHHHc
Q 003890 181 GQPRLDISEFERGREELFDLLIEGPSGLSVVAILNGSGFDKTAFAADTYN 230 (788)
Q Consensus 181 ~~~~~~~vGr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 230 (788)
|..+.+++|-+..++.+.+.+..+. -...+-++|+.|+||||+|+.+..
T Consensus 14 P~~f~dIiGQe~~v~~L~~aI~~~r-l~HAYLF~GP~GtGKTt~AriLAk 62 (725)
T PRK07133 14 PKTFDDIVGQDHIVQTLKNIIKSNK-ISHAYLFSGPRGTGKTSVAKIFAN 62 (725)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCcHHHHHHHHHH
Confidence 3444889999999999999997654 345667899999999999998876
No 157
>CHL00095 clpC Clp protease ATP binding subunit
Probab=96.81 E-value=0.0045 Score=74.81 Aligned_cols=45 Identities=18% Similarity=0.155 Sum_probs=37.8
Q ss_pred CCcccchhcHHHHHHHHhcCCCCcEEEEEEcCCCChHHHHHHHHHcc
Q 003890 185 LDISEFERGREELFDLLIEGPSGLSVVAILNGSGFDKTAFAADTYNN 231 (788)
Q Consensus 185 ~~~vGr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 231 (788)
..++||+++++++++.|.... ..-+.++|.+|+|||++|+.++..
T Consensus 179 ~~~igr~~ei~~~~~~L~r~~--~~n~lL~G~pGvGKTal~~~la~~ 223 (821)
T CHL00095 179 DPVIGREKEIERVIQILGRRT--KNNPILIGEPGVGKTAIAEGLAQR 223 (821)
T ss_pred CCCCCcHHHHHHHHHHHcccc--cCCeEEECCCCCCHHHHHHHHHHH
Confidence 568999999999999997654 233459999999999999998873
No 158
>PRK12377 putative replication protein; Provisional
Probab=96.79 E-value=0.0053 Score=62.51 Aligned_cols=101 Identities=16% Similarity=0.055 Sum_probs=54.9
Q ss_pred cEEEEEEcCCCChHHHHHHHHHcccCcccccceeEEEEeCCCCChHHHHHHHHHHcCCCCCCcccccCCHHHHHHHHHHH
Q 003890 208 LSVVAILNGSGFDKTAFAADTYNNNHIKFYFDCLAWVRVSIAYDSGKILDDIIKSVMPPSRVSVIIGEDYKLKKTILRDY 287 (788)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~~ 287 (788)
...+.++|.+|+|||+||..+++. +......++++++. ++...+-...... .... .+.+.
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~--l~~~g~~v~~i~~~------~l~~~l~~~~~~~--------~~~~----~~l~~ 160 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNR--LLAKGRSVIVVTVP------DVMSRLHESYDNG--------QSGE----KFLQE 160 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH--HHHcCCCeEEEEHH------HHHHHHHHHHhcc--------chHH----HHHHH
Confidence 467899999999999999999994 44433345666543 3444443332111 0111 12222
Q ss_pred hcCCcEEEEEeCCCC-ChhhH--HHHhhhcCCC-CCCcEEEEecCC
Q 003890 288 LTNKKYFIVLDDVFN-DSDIW--DDLEQVLPDN-QNGSRVLITVTD 329 (788)
Q Consensus 288 l~~kr~LlVLDdvw~-~~~~~--~~l~~~l~~~-~~gskIivTTR~ 329 (788)
+ .+-=||||||+.. ....| +.+...+... ...--+||||-.
T Consensus 161 l-~~~dLLiIDDlg~~~~s~~~~~~l~~ii~~R~~~~~ptiitSNl 205 (248)
T PRK12377 161 L-CKVDLLVLDEIGIQRETKNEQVVLNQIIDRRTASMRSVGMLTNL 205 (248)
T ss_pred h-cCCCEEEEcCCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 3 3556999999941 12233 3333333321 112236777764
No 159
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=96.78 E-value=0.00012 Score=76.72 Aligned_cols=256 Identities=12% Similarity=0.009 Sum_probs=143.5
Q ss_pred cccceEEecCCCCchhhhhhhhhhhcCCccccEEEecCCC-CC-CCCccc-cCCCCccEEEecCC-CCccc-Ch-hhcCC
Q 003890 520 IYLQSFLNHSSESDHLALIDCENFCEKFKHLRILNLGSAV-LV-QFPPGL-ENLFHLKYLKLNIP-SLKCL-PS-LLCTL 593 (788)
Q Consensus 520 ~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~-l~-~lp~~i-~~L~~L~~L~L~~~-~i~~l-p~-~i~~L 593 (788)
..|+.|.+.++.....- .+..+-..++++..|.+.+|. ++ ..-.++ ..+..|++|++..| .++.. -. -...+
T Consensus 138 g~lk~LSlrG~r~v~~s--slrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC 215 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDS--SLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGC 215 (483)
T ss_pred cccccccccccccCCcc--hhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhh
Confidence 35667777776642111 112455678888888888887 33 111233 34678888888874 35532 12 22467
Q ss_pred CCCcEEEccCC-CCcc--cchhhhcccccceeeccCccC-CCC-CcCCcCccccccccccccccc---c-CccccCCCCC
Q 003890 594 LNLQTLEMPSS-YVDQ--SPEDIWMMQKLMHLNFGSITL-PAP-PKNYSSSLKNLIFISTLNPSS---C-TPDILGRLPN 664 (788)
Q Consensus 594 ~~L~~L~L~~~-~l~~--lp~~l~~L~~L~~L~l~~~~~-~~~-i~~~~~~l~~L~~L~~~~~~~---~-~~~~l~~L~~ 664 (788)
++|.+|++++| .+.. +..-..++.+|+.+.+.||.- +.. +...=+....+..+++.++.. . ....-..+..
T Consensus 216 ~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~ 295 (483)
T KOG4341|consen 216 RKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHA 295 (483)
T ss_pred hhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhH
Confidence 88999999988 4433 222244555666666665521 110 000001111222333222211 0 1111244677
Q ss_pred CCeEEEEccCCcChhcHHHhccCCCCCCEEEeecCCCCCcccccccCCCccccccc----cccccccccCcccCCCCCcc
Q 003890 665 VQTLRISGDLSCYHSGVSKSLCELHKLECLKLVNERKPSRMVLYEYQFPPTDMARI----LSQLIRQEFVESEMSLPLLQ 740 (788)
Q Consensus 665 L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~l~~~~~L~~L----~~~l~~~~lp~~l~~l~~L~ 740 (788)
|+.|..+++.......+.+--.+..+|+.|-+..+..++++....--.+.+.|+.+ .+.....++-+.-.+.+.|+
T Consensus 296 lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr 375 (483)
T KOG4341|consen 296 LQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLR 375 (483)
T ss_pred hhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhc
Confidence 88999888873233333333456689999999977666442222223457788888 22221222332223579999
Q ss_pred eEEEeccccccccccCCcccc----cccccCCeeEecccCchhh
Q 003890 741 LLDLEESDEEDDERSDILEIL----QDINDFVHESEEAIDTFFI 780 (788)
Q Consensus 741 ~L~L~~~~l~~~~~~~~l~~l----~~L~~L~~L~L~~~~~l~~ 780 (788)
.|.|++|.+..++ ....+ ..+..|..|.|++|+..+-
T Consensus 376 ~lslshce~itD~---gi~~l~~~~c~~~~l~~lEL~n~p~i~d 416 (483)
T KOG4341|consen 376 VLSLSHCELITDE---GIRHLSSSSCSLEGLEVLELDNCPLITD 416 (483)
T ss_pred cCChhhhhhhhhh---hhhhhhhccccccccceeeecCCCCchH
Confidence 9999999776541 22333 3578899999999987653
No 160
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.78 E-value=0.0016 Score=62.07 Aligned_cols=100 Identities=19% Similarity=0.141 Sum_probs=49.3
Q ss_pred cccEEEecCCCCCCCCccccCCCCccEEEecCCCCcccChhhc-CCCCCcEEEccCCCCcccch--hhhcccccceeecc
Q 003890 549 HLRILNLGSAVLVQFPPGLENLFHLKYLKLNIPSLKCLPSLLC-TLLNLQTLEMPSSYVDQSPE--DIWMMQKLMHLNFG 625 (788)
Q Consensus 549 ~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~lp~~i~-~L~~L~~L~L~~~~l~~lp~--~l~~L~~L~~L~l~ 625 (788)
....+||++|.+..++ .+..+..|.+|.+++|+|..+.+.+. -+++|..|.|.+|++.++-+ .+..+++|++|.+-
T Consensus 43 ~~d~iDLtdNdl~~l~-~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll 121 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKLD-NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLL 121 (233)
T ss_pred ccceecccccchhhcc-cCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeec
Confidence 3445566666554432 34455556666666666665544442 34456666666664444422 25555566666555
Q ss_pred CccCCCC--Cc-CCcCccccccccccc
Q 003890 626 SITLPAP--PK-NYSSSLKNLIFISTL 649 (788)
Q Consensus 626 ~~~~~~~--i~-~~~~~l~~L~~L~~~ 649 (788)
+|.+... .- -.+..+++|++|++.
T Consensus 122 ~Npv~~k~~YR~yvl~klp~l~~LDF~ 148 (233)
T KOG1644|consen 122 GNPVEHKKNYRLYVLYKLPSLRTLDFQ 148 (233)
T ss_pred CCchhcccCceeEEEEecCcceEeehh
Confidence 4432210 00 001455566666554
No 161
>PRK12608 transcription termination factor Rho; Provisional
Probab=96.77 E-value=0.0041 Score=66.25 Aligned_cols=106 Identities=11% Similarity=-0.038 Sum_probs=65.2
Q ss_pred cHHHHHHHHhcCCCCcEEEEEEcCCCChHHHHHHHHHcccCccccc-ce-eEEEEeCCCC-ChHHHHHHHHHHcCCCCCC
Q 003890 193 GREELFDLLIEGPSGLSVVAILNGSGFDKTAFAADTYNNNHIKFYF-DC-LAWVRVSIAY-DSGKILDDIIKSVMPPSRV 269 (788)
Q Consensus 193 ~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F-~~-~~wv~vs~~~-~~~~~~~~il~~l~~~~~~ 269 (788)
...++++.+..-.. -..+.|+|.+|+|||||++.+.+. +.... +. ++|+.+.+.. .+.++.+.+...+......
T Consensus 119 ~~~RvID~l~PiGk-GQR~LIvG~pGtGKTTLl~~la~~--i~~~~~dv~~vv~lIgER~~EV~df~~~i~~~Vvast~d 195 (380)
T PRK12608 119 LSMRVVDLVAPIGK-GQRGLIVAPPRAGKTVLLQQIAAA--VAANHPEVHLMVLLIDERPEEVTDMRRSVKGEVYASTFD 195 (380)
T ss_pred hhHhhhhheeecCC-CceEEEECCCCCCHHHHHHHHHHH--HHhcCCCceEEEEEecCCCCCHHHHHHHHhhhEEeecCC
Confidence 34557887765332 245689999999999999998873 33322 33 4777787764 5788888888766654321
Q ss_pred ccc-ccCCHHHHHHHHHHHh--cCCcEEEEEeCCC
Q 003890 270 SVI-IGEDYKLKKTILRDYL--TNKKYFIVLDDVF 301 (788)
Q Consensus 270 ~~~-~~~~~~~~~~~l~~~l--~~kr~LlVLDdvw 301 (788)
... ...........+.+++ +|++++||+|++-
T Consensus 196 e~~~~~~~v~~~~~~~Ae~f~~~GkdVVLvlDslt 230 (380)
T PRK12608 196 RPPDEHIRVAELVLERAKRLVEQGKDVVILLDSLT 230 (380)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCcH
Confidence 000 0011111122222333 5899999999995
No 162
>PRK07261 topology modulation protein; Provisional
Probab=96.77 E-value=0.0036 Score=60.26 Aligned_cols=65 Identities=17% Similarity=0.215 Sum_probs=41.4
Q ss_pred EEEEEcCCCChHHHHHHHHHcccCcc-cccceeEEEEeCCCCChHHHHHHHHHHcCCCCCCcccccCCHHHHHHHHHHHh
Q 003890 210 VVAILNGSGFDKTAFAADTYNNNHIK-FYFDCLAWVRVSIAYDSGKILDDIIKSVMPPSRVSVIIGEDYKLKKTILRDYL 288 (788)
Q Consensus 210 vi~I~G~gGiGKTtLa~~v~~~~~~~-~~F~~~~wv~vs~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~~l 288 (788)
.|.|+|++|+||||||+.+.....+. -+.|...|-.. +...+.++....+.+.+
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~~~~-------------------------~~~~~~~~~~~~~~~~~ 56 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHFQPN-------------------------WQERDDDDMIADISNFL 56 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEeccc-------------------------cccCCHHHHHHHHHHHH
Confidence 48899999999999999998632111 12333444110 01223456666777777
Q ss_pred cCCcEEEEEeCCC
Q 003890 289 TNKKYFIVLDDVF 301 (788)
Q Consensus 289 ~~kr~LlVLDdvw 301 (788)
.+.+ .|+|...
T Consensus 57 ~~~~--wIidg~~ 67 (171)
T PRK07261 57 LKHD--WIIDGNY 67 (171)
T ss_pred hCCC--EEEcCcc
Confidence 7666 6888886
No 163
>COG3903 Predicted ATPase [General function prediction only]
Probab=96.77 E-value=0.0027 Score=67.34 Aligned_cols=252 Identities=13% Similarity=0.065 Sum_probs=140.0
Q ss_pred CcEEEEEEcCCCChHHHHHHHHHcccCcccccce-eEEEEeCCCCChHHHHHHHHHHcCCCCCCcccccCCHHHHHHHHH
Q 003890 207 GLSVVAILNGSGFDKTAFAADTYNNNHIKFYFDC-LAWVRVSIAYDSGKILDDIIKSVMPPSRVSVIIGEDYKLKKTILR 285 (788)
Q Consensus 207 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~-~~wv~vs~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~l~ 285 (788)
..+.+.++|.|||||||++-.+.. ++..|.. +.++....-.|...+.-.....++.... +-+.....+.
T Consensus 13 ~~RlvtL~g~ggvgkttl~~~~a~---~~~~~~~~v~~vdl~pitD~~~v~~~~ag~~gl~~~-------~g~~~~~~~~ 82 (414)
T COG3903 13 ALRLVTLTGAGGVGKTTLALQAAH---AASEYADGVAFVDLAPITDPALVFPTLAGALGLHVQ-------PGDSAVDTLV 82 (414)
T ss_pred hhheeeeeccCccceehhhhhhHh---HhhhcccceeeeeccccCchhHhHHHHHhhcccccc-------cchHHHHHHH
Confidence 478999999999999999998887 6777887 5666666666666666666665665542 2244455667
Q ss_pred HHhcCCcEEEEEeCCCCCh-hhHHHHhhhcCCCCCCcEEEEecCChHHHhhccccC--CCcc-c--------------h-
Q 003890 286 DYLTNKKYFIVLDDVFNDS-DIWDDLEQVLPDNQNGSRVLITVTDLDLLESLEMEN--GEKI-R--------------P- 346 (788)
Q Consensus 286 ~~l~~kr~LlVLDdvw~~~-~~~~~l~~~l~~~~~gskIivTTR~~~v~~~~~~~~--~~~~-~--------------~- 346 (788)
....++|.++|+||.. +. +.-..+.-.+..+.+.-.|+.|+|..-....=.... .... . |
T Consensus 83 ~~~~~rr~llvldnce-hl~~~~a~~i~all~~~~~~~~~atsre~~l~~ge~~~~~~~L~~~d~a~~lf~~ra~~~~~~ 161 (414)
T COG3903 83 RRIGDRRALLVLDNCE-HLLDACAALIVALLGACPRLAILATSREAILVAGEVHRRVPSLSLFDEAIELFVCRAVLVALS 161 (414)
T ss_pred HHHhhhhHHHHhcCcH-HHHHHHHHHHHHHHccchhhhhHHHhHhhhcccccccccCCccccCCchhHHHHHHHHHhccc
Confidence 7778899999999985 22 222222233334444556777877533221100000 0000 0 0
Q ss_pred -----------------------HHHHHHHHhhccCchhHHHHHHHcCCC-------CccCCccCCChHHHHHhhhccCC
Q 003890 347 -----------------------DSVLIGGQMIRLKHESWQFFILHYGSM-------PLENYVQGEAIPTIWRQIYAVME 396 (788)
Q Consensus 347 -----------------------ai~~ig~~L~~~~~~~W~~~l~~~~~~-------~~~~~~~~~~i~~~l~~~~sy~~ 396 (788)
||...++..+.-... .+...+... .-..........+.+. +||.-
T Consensus 162 f~l~~~~~a~v~~icr~ldg~~laielaaarv~sl~~~---~i~~~L~drf~ll~~~~r~a~~~~qtl~asl~--ws~~l 236 (414)
T COG3903 162 FWLTDDNAAAVAEICRRLDGIPLAIELAAARVRSLSPD---EIAAGLRDRFRLLTGGARLAVLRQQTLRASLD--WSYAL 236 (414)
T ss_pred eeecCCchHHHHHHHHHhhcchHHHHHHHHHHHhcCHH---HHHHHHhhHHHHHhcccccchhHHHhccchhh--hhhHh
Confidence 233333222222111 111111110 0000122345678899 99999
Q ss_pred CChhhHHHhhhhhccCCCceechhHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCcccceecCCCCceEEEEeCHHHHHH
Q 003890 397 LPFHLKVCCIYLCVFRPSIEISTRQLYQLWVAEGFIPYNSEETAEHYLKELIHRGFIQVSKRRAGGTIKACYVPSFVYYS 476 (788)
Q Consensus 397 L~~~lk~cfl~~~~Fp~~~~i~~~~Li~~W~a~g~i~~~~~~~~~~~~~~L~~~~ll~~~~~~~~~~~~~~~mHdlv~d~ 476 (788)
|....+--|.-++.|...+.-. ...|.+-|-......-..-.-+..+++++++-..... +. ..|+.-+-++.|
T Consensus 237 Ltgwe~~~~~rLa~~~g~f~~~----l~~~~a~g~~~~~~~y~~~~a~~ll~~kslv~a~~~~--~~-a~~Rl~eT~r~Y 309 (414)
T COG3903 237 LTGWERALFGRLAVFVGGFDLG----LALAVAAGADVDVPRYLVLLALTLLVDKSLVVALDLL--GR-ARYRLLETGRRY 309 (414)
T ss_pred hhhHHHHHhcchhhhhhhhccc----HHHHHhcCCccccchHHHHHHHHHHhhccchhhhhhh--hH-HHHHHHHHHHHH
Confidence 9999999999999998876543 3455555543211122334445667888877654321 11 234444555555
Q ss_pred HHHHh
Q 003890 477 LLSVA 481 (788)
Q Consensus 477 a~~~~ 481 (788)
+..+-
T Consensus 310 alaeL 314 (414)
T COG3903 310 ALAEL 314 (414)
T ss_pred HHHHH
Confidence 55443
No 164
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.75 E-value=0.0016 Score=62.09 Aligned_cols=85 Identities=22% Similarity=0.305 Sum_probs=49.8
Q ss_pred hhhcCCccccEEEecCCCCCCCCccccC-CCCccEEEecCCCCcccC--hhhcCCCCCcEEEccCCCCcccch----hhh
Q 003890 542 NFCEKFKHLRILNLGSAVLVQFPPGLEN-LFHLKYLKLNIPSLKCLP--SLLCTLLNLQTLEMPSSYVDQSPE----DIW 614 (788)
Q Consensus 542 ~~~~~l~~L~~L~L~~~~l~~lp~~i~~-L~~L~~L~L~~~~i~~lp--~~i~~L~~L~~L~L~~~~l~~lp~----~l~ 614 (788)
..|..++.|..|.|.+|.|+.+.+.+.. +++|..|.|.+|+|.++- ..+..++.|++|.+-+|.+...+. -+.
T Consensus 58 ~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~ 137 (233)
T KOG1644|consen 58 DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLY 137 (233)
T ss_pred ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecCCchhcccCceeEEEE
Confidence 4556666666666666666655555544 345666666666655442 234556666666666665544332 255
Q ss_pred cccccceeeccC
Q 003890 615 MMQKLMHLNFGS 626 (788)
Q Consensus 615 ~L~~L~~L~l~~ 626 (788)
.+++|+.||...
T Consensus 138 klp~l~~LDF~k 149 (233)
T KOG1644|consen 138 KLPSLRTLDFQK 149 (233)
T ss_pred ecCcceEeehhh
Confidence 666666666654
No 165
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=96.74 E-value=0.004 Score=74.93 Aligned_cols=134 Identities=15% Similarity=0.112 Sum_probs=73.9
Q ss_pred CCcccchhcHHHHHHHHhcC-------CCCcEEEEEEcCCCChHHHHHHHHHcccCcccccceeEEEEeCCCCChHHHHH
Q 003890 185 LDISEFERGREELFDLLIEG-------PSGLSVVAILNGSGFDKTAFAADTYNNNHIKFYFDCLAWVRVSIAYDSGKILD 257 (788)
Q Consensus 185 ~~~vGr~~~~~~i~~~L~~~-------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~ 257 (788)
..++|-+..++.+.+.+... .....++.++|+.|+|||.||+.+... +-+.....+-++++.-.+..
T Consensus 566 ~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~--l~~~~~~~~~~dmse~~~~~---- 639 (852)
T TIGR03345 566 ERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAEL--LYGGEQNLITINMSEFQEAH---- 639 (852)
T ss_pred CeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHH--HhCCCcceEEEeHHHhhhhh----
Confidence 67999999999999998531 234568899999999999999988763 22211222222322211111
Q ss_pred HHHHHcCCCCCCcccccCCHHHHHHHHHHHhcCCcEEEEEeCCCC-ChhhHHHHhhhcCCCC-----------CCcEEEE
Q 003890 258 DIIKSVMPPSRVSVIIGEDYKLKKTILRDYLTNKKYFIVLDDVFN-DSDIWDDLEQVLPDNQ-----------NGSRVLI 325 (788)
Q Consensus 258 ~il~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVLDdvw~-~~~~~~~l~~~l~~~~-----------~gskIiv 325 (788)
.+.+-++..... ........+...+++ ...-+|+||++.. ++..++.+...+..+. ..+-||+
T Consensus 640 ~~~~l~g~~~gy--vg~~~~g~L~~~v~~---~p~svvllDEieka~~~v~~~Llq~ld~g~l~d~~Gr~vd~~n~iiI~ 714 (852)
T TIGR03345 640 TVSRLKGSPPGY--VGYGEGGVLTEAVRR---KPYSVVLLDEVEKAHPDVLELFYQVFDKGVMEDGEGREIDFKNTVILL 714 (852)
T ss_pred hhccccCCCCCc--ccccccchHHHHHHh---CCCcEEEEechhhcCHHHHHHHHHHhhcceeecCCCcEEeccccEEEE
Confidence 111111211110 000011122333332 4566999999962 4566777766665442 3456667
Q ss_pred ecCC
Q 003890 326 TVTD 329 (788)
Q Consensus 326 TTR~ 329 (788)
||..
T Consensus 715 TSNl 718 (852)
T TIGR03345 715 TSNA 718 (852)
T ss_pred eCCC
Confidence 7664
No 166
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=96.72 E-value=0.01 Score=66.35 Aligned_cols=48 Identities=17% Similarity=-0.058 Sum_probs=39.6
Q ss_pred CCCCCcccchhcHHHHHHHHhcCCCCcEEEEEEcCCCChHHHHHHHHHc
Q 003890 182 QPRLDISEFERGREELFDLLIEGPSGLSVVAILNGSGFDKTAFAADTYN 230 (788)
Q Consensus 182 ~~~~~~vGr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 230 (788)
..+.+++|.+..++.+.+.+..+. -...+-++|..|+||||+|+.+..
T Consensus 14 ~~~~diiGq~~~v~~L~~~i~~~~-i~ha~Lf~Gp~G~GKtt~A~~lAk 61 (451)
T PRK06305 14 QTFSEILGQDAVVAVLKNALRFNR-AAHAYLFSGIRGTGKTTLARIFAK 61 (451)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCC-CceEEEEEcCCCCCHHHHHHHHHH
Confidence 344889999999999999987654 235677899999999999988876
No 167
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=96.72 E-value=0.01 Score=72.04 Aligned_cols=133 Identities=16% Similarity=0.177 Sum_probs=75.7
Q ss_pred CCcccchhcHHHHHHHHhcC-------CCCcEEEEEEcCCCChHHHHHHHHHcccCcccccceeEEEEeCCCCChHHHHH
Q 003890 185 LDISEFERGREELFDLLIEG-------PSGLSVVAILNGSGFDKTAFAADTYNNNHIKFYFDCLAWVRVSIAYDSGKILD 257 (788)
Q Consensus 185 ~~~vGr~~~~~~i~~~L~~~-------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~ 257 (788)
..++|.+..++.+.+.+... .....++.++|++|+|||++|+.+... ....-...+.++.+.-.+...+ .
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~--l~~~~~~~i~~d~s~~~~~~~~-~ 641 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEF--LFDDEDAMVRIDMSEYMEKHSV-A 641 (852)
T ss_pred cccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHH--hcCCCCcEEEEechhhcccchH-H
Confidence 66899999999999998642 123567889999999999999999973 3222223344444443221111 1
Q ss_pred HHHHHcCCCCCCcccccCCHHHHHHHHHHHhc-CCcEEEEEeCCCC-ChhhHHHHhhhcCCC-----------CCCcEEE
Q 003890 258 DIIKSVMPPSRVSVIIGEDYKLKKTILRDYLT-NKKYFIVLDDVFN-DSDIWDDLEQVLPDN-----------QNGSRVL 324 (788)
Q Consensus 258 ~il~~l~~~~~~~~~~~~~~~~~~~~l~~~l~-~kr~LlVLDdvw~-~~~~~~~l~~~l~~~-----------~~gskIi 324 (788)
.+ ++.+... ........ +.+.++ ....+|+||++.. +++.++.|...+..+ ...+-||
T Consensus 642 ~l---~g~~~g~--~g~~~~g~----l~~~v~~~p~~vlllDeieka~~~v~~~Ll~~l~~g~l~d~~g~~vd~rn~iiI 712 (852)
T TIGR03346 642 RL---IGAPPGY--VGYEEGGQ----LTEAVRRKPYSVVLFDEVEKAHPDVFNVLLQVLDDGRLTDGQGRTVDFRNTVII 712 (852)
T ss_pred Hh---cCCCCCc--cCcccccH----HHHHHHcCCCcEEEEeccccCCHHHHHHHHHHHhcCceecCCCeEEecCCcEEE
Confidence 11 1111110 00001112 333332 3345899999963 467777777776533 1234477
Q ss_pred EecCC
Q 003890 325 ITVTD 329 (788)
Q Consensus 325 vTTR~ 329 (788)
+||..
T Consensus 713 ~TSn~ 717 (852)
T TIGR03346 713 MTSNL 717 (852)
T ss_pred EeCCc
Confidence 77764
No 168
>PRK10865 protein disaggregation chaperone; Provisional
Probab=96.70 E-value=0.0088 Score=72.27 Aligned_cols=133 Identities=17% Similarity=0.155 Sum_probs=73.5
Q ss_pred CCcccchhcHHHHHHHHhcC-------CCCcEEEEEEcCCCChHHHHHHHHHcccCcccccceeEEEEeCCCCChHHHHH
Q 003890 185 LDISEFERGREELFDLLIEG-------PSGLSVVAILNGSGFDKTAFAADTYNNNHIKFYFDCLAWVRVSIAYDSGKILD 257 (788)
Q Consensus 185 ~~~vGr~~~~~~i~~~L~~~-------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~ 257 (788)
..++|.+..++.+.+.+... +....++.++|+.|+|||++|+.+.+- ....-...+.++.+.-.. .
T Consensus 568 ~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~--l~~~~~~~i~id~se~~~-~---- 640 (857)
T PRK10865 568 HRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANF--MFDSDDAMVRIDMSEFME-K---- 640 (857)
T ss_pred CeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHH--hhcCCCcEEEEEhHHhhh-h----
Confidence 56899999999988888532 222457889999999999999999872 221112234444433211 1
Q ss_pred HHHHHcCCCCCCcccccCCHHHHHHHHHHHhcC-CcEEEEEeCCCC-ChhhHHHHhhhcCCC----C-------CCcEEE
Q 003890 258 DIIKSVMPPSRVSVIIGEDYKLKKTILRDYLTN-KKYFIVLDDVFN-DSDIWDDLEQVLPDN----Q-------NGSRVL 324 (788)
Q Consensus 258 ~il~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~-kr~LlVLDdvw~-~~~~~~~l~~~l~~~----~-------~gskIi 324 (788)
.....+.+... .....+. ...+.+.++. ..-+|+|||+.. ++..++.+...+..+ + ..+-||
T Consensus 641 ~~~~~LiG~~p----gy~g~~~-~g~l~~~v~~~p~~vLllDEieka~~~v~~~Ll~ile~g~l~d~~gr~vd~rn~iiI 715 (857)
T PRK10865 641 HSVSRLVGAPP----GYVGYEE-GGYLTEAVRRRPYSVILLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFRNTVVI 715 (857)
T ss_pred hhHHHHhCCCC----cccccch-hHHHHHHHHhCCCCeEEEeehhhCCHHHHHHHHHHHhhCceecCCceEEeecccEEE
Confidence 11222221111 1001111 1123333333 335999999962 456777777666432 1 123377
Q ss_pred EecCC
Q 003890 325 ITVTD 329 (788)
Q Consensus 325 vTTR~ 329 (788)
+||..
T Consensus 716 ~TSN~ 720 (857)
T PRK10865 716 MTSNL 720 (857)
T ss_pred EeCCc
Confidence 77765
No 169
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=96.70 E-value=0.017 Score=69.43 Aligned_cols=52 Identities=15% Similarity=0.274 Sum_probs=40.4
Q ss_pred CCcccchhcHHHHHHHHhc----CCCCcEEEEEEcCCCChHHHHHHHHHcccCccccc
Q 003890 185 LDISEFERGREELFDLLIE----GPSGLSVVAILNGSGFDKTAFAADTYNNNHIKFYF 238 (788)
Q Consensus 185 ~~~vGr~~~~~~i~~~L~~----~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F 238 (788)
.+++|.+..++.|.+++.. +.....++.++|++|+|||++|+.+.+ .....|
T Consensus 320 ~~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~--~l~~~~ 375 (775)
T TIGR00763 320 EDHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAK--ALNRKF 375 (775)
T ss_pred hhcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHH--HhcCCe
Confidence 5688999999999987742 222345899999999999999999998 444443
No 170
>PHA00729 NTP-binding motif containing protein
Probab=96.68 E-value=0.0086 Score=59.46 Aligned_cols=33 Identities=15% Similarity=0.215 Sum_probs=26.1
Q ss_pred HHHHHHhcCCCCcEEEEEEcCCCChHHHHHHHHHc
Q 003890 196 ELFDLLIEGPSGLSVVAILNGSGFDKTAFAADTYN 230 (788)
Q Consensus 196 ~i~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 230 (788)
.+++.+...+ ...|.|.|.+|+||||||..+.+
T Consensus 7 ~~~~~l~~~~--f~nIlItG~pGvGKT~LA~aLa~ 39 (226)
T PHA00729 7 KIVSAYNNNG--FVSAVIFGKQGSGKTTYALKVAR 39 (226)
T ss_pred HHHHHHhcCC--eEEEEEECCCCCCHHHHHHHHHH
Confidence 3455555443 56788999999999999999988
No 171
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=96.67 E-value=0.024 Score=53.99 Aligned_cols=121 Identities=15% Similarity=0.108 Sum_probs=70.3
Q ss_pred cchhcHHHHHHHHhcCCCCcEEEEEEcCCCChHHHHHHHHHcc----cCcc--------------cccceeEEEEeCCC-
Q 003890 189 EFERGREELFDLLIEGPSGLSVVAILNGSGFDKTAFAADTYNN----NHIK--------------FYFDCLAWVRVSIA- 249 (788)
Q Consensus 189 Gr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~----~~~~--------------~~F~~~~wv~vs~~- 249 (788)
|-+...+.+.+.+..+. -...+-++|..|+||+|+|..+... .... ...+...|+.-...
T Consensus 1 gq~~~~~~L~~~~~~~~-l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~ 79 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSGR-LPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKPDKKK 79 (162)
T ss_dssp S-HHHHHHHHHHHHCTC---SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEETTTSS
T ss_pred CcHHHHHHHHHHHHcCC-cceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEeccccc
Confidence 33455566666665543 3456789999999999998877652 1110 22333445433322
Q ss_pred --CChHHHHHHHHHHcCCCCCCcccccCCHHHHHHHHHHHhcCCcEEEEEeCCCC-ChhhHHHHhhhcCCCCCCcEEEEe
Q 003890 250 --YDSGKILDDIIKSVMPPSRVSVIIGEDYKLKKTILRDYLTNKKYFIVLDDVFN-DSDIWDDLEQVLPDNQNGSRVLIT 326 (788)
Q Consensus 250 --~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVLDdvw~-~~~~~~~l~~~l~~~~~gskIivT 326 (788)
..++.+. ++...+..... .+++=.+|+||+.. ..+.+..+...+-....++++|++
T Consensus 80 ~~i~i~~ir-~i~~~~~~~~~--------------------~~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fiL~ 138 (162)
T PF13177_consen 80 KSIKIDQIR-EIIEFLSLSPS--------------------EGKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFILI 138 (162)
T ss_dssp SSBSHHHHH-HHHHHCTSS-T--------------------TSSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEEEE
T ss_pred chhhHHHHH-HHHHHHHHHHh--------------------cCCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEEEE
Confidence 2222222 33333332221 24566889999963 567888888888877778999888
Q ss_pred cCChH
Q 003890 327 VTDLD 331 (788)
Q Consensus 327 TR~~~ 331 (788)
|++.+
T Consensus 139 t~~~~ 143 (162)
T PF13177_consen 139 TNNPS 143 (162)
T ss_dssp ES-GG
T ss_pred ECChH
Confidence 88754
No 172
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=96.66 E-value=0.0091 Score=67.44 Aligned_cols=52 Identities=15% Similarity=0.229 Sum_probs=42.8
Q ss_pred CCcccchhcHHHHHHHHhcC----CCCcEEEEEEcCCCChHHHHHHHHHcccCccccc
Q 003890 185 LDISEFERGREELFDLLIEG----PSGLSVVAILNGSGFDKTAFAADTYNNNHIKFYF 238 (788)
Q Consensus 185 ~~~vGr~~~~~~i~~~L~~~----~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F 238 (788)
.+=+|.++-+++|+++|.-. .-.-.++++||++|+|||.|++.++. .....|
T Consensus 323 ~dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~--al~Rkf 378 (782)
T COG0466 323 KDHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAK--ALGRKF 378 (782)
T ss_pred ccccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHH--HhCCCE
Confidence 55679999999999999542 22357999999999999999999998 566555
No 173
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=96.65 E-value=0.022 Score=65.42 Aligned_cols=49 Identities=18% Similarity=0.012 Sum_probs=40.2
Q ss_pred CCCCCCcccchhcHHHHHHHHhcCCCCcEEEEEEcCCCChHHHHHHHHHc
Q 003890 181 GQPRLDISEFERGREELFDLLIEGPSGLSVVAILNGSGFDKTAFAADTYN 230 (788)
Q Consensus 181 ~~~~~~~vGr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 230 (788)
|..+.+++|.+...+.+.+++..+. -...+-++|..|+||||+|+.+..
T Consensus 12 P~~f~~viGq~~v~~~L~~~i~~~~-~~hayLf~Gp~GtGKTt~Ak~lAk 60 (559)
T PRK05563 12 PQTFEDVVGQEHITKTLKNAIKQGK-ISHAYLFSGPRGTGKTSAAKIFAK 60 (559)
T ss_pred CCcHHhccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHH
Confidence 3444889999999999999998754 345667899999999999998875
No 174
>PRK09087 hypothetical protein; Validated
Probab=96.65 E-value=0.0074 Score=60.84 Aligned_cols=24 Identities=25% Similarity=0.162 Sum_probs=21.6
Q ss_pred cEEEEEEcCCCChHHHHHHHHHcc
Q 003890 208 LSVVAILNGSGFDKTAFAADTYNN 231 (788)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~~ 231 (788)
.+.+.|+|..|+|||+|++.+++.
T Consensus 44 ~~~l~l~G~~GsGKThLl~~~~~~ 67 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASIWREK 67 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHh
Confidence 567899999999999999998874
No 175
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.62 E-value=0.0012 Score=65.54 Aligned_cols=82 Identities=20% Similarity=0.248 Sum_probs=35.9
Q ss_pred CCccccEEEecCCCCCCCCccccCCCCccEEEecCC--CCc-ccChhhcCCCCCcEEEccCCCCc---ccchhhhccccc
Q 003890 546 KFKHLRILNLGSAVLVQFPPGLENLFHLKYLKLNIP--SLK-CLPSLLCTLLNLQTLEMPSSYVD---QSPEDIWMMQKL 619 (788)
Q Consensus 546 ~l~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~--~i~-~lp~~i~~L~~L~~L~L~~~~l~---~lp~~l~~L~~L 619 (788)
.+..|..|++.++.++.+ ..+..|++|++|.++.| .+. .++-...++++|++|++++|.++ .++. +..+.+|
T Consensus 41 ~~~~le~ls~~n~gltt~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~p-l~~l~nL 118 (260)
T KOG2739|consen 41 EFVELELLSVINVGLTTL-TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRP-LKELENL 118 (260)
T ss_pred cccchhhhhhhccceeec-ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccch-hhhhcch
Confidence 333444444444443322 12333455555555555 222 33333334455555555555332 2222 4445555
Q ss_pred ceeeccCccC
Q 003890 620 MHLNFGSITL 629 (788)
Q Consensus 620 ~~L~l~~~~~ 629 (788)
..|++++|..
T Consensus 119 ~~Ldl~n~~~ 128 (260)
T KOG2739|consen 119 KSLDLFNCSV 128 (260)
T ss_pred hhhhcccCCc
Confidence 5555554433
No 176
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=96.60 E-value=0.0079 Score=59.03 Aligned_cols=130 Identities=17% Similarity=0.147 Sum_probs=63.6
Q ss_pred cchhcHHHHHHHHhcCCCCcEEEEEEcCCCChHHHHHHHHHcccCcccccceeEEEEe----CCCC--ChHH-------H
Q 003890 189 EFERGREELFDLLIEGPSGLSVVAILNGSGFDKTAFAADTYNNNHIKFYFDCLAWVRV----SIAY--DSGK-------I 255 (788)
Q Consensus 189 Gr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v----s~~~--~~~~-------~ 255 (788)
.+..+-...++.|.. ..++.+.|.+|.|||.||.+..-+.-..+.|+.++++.- ++.. -+-. .
T Consensus 4 p~~~~Q~~~~~al~~----~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~Rp~v~~~~~lGflpG~~~eK~~p~ 79 (205)
T PF02562_consen 4 PKNEEQKFALDALLN----NDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITRPPVEAGEDLGFLPGDLEEKMEPY 79 (205)
T ss_dssp --SHHHHHHHHHHHH-----SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S--TT----SS---------TT
T ss_pred CCCHHHHHHHHHHHh----CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEecCCCCccccccCCCCHHHHHHHH
Confidence 455566667777772 669999999999999999887765444588888887731 1111 0000 1
Q ss_pred HHHHHHHcCCCCCCcccccCCHHHHHHH------HHHHhcCC---cEEEEEeCCCC-ChhhHHHHhhhcCCCCCCcEEEE
Q 003890 256 LDDIIKSVMPPSRVSVIIGEDYKLKKTI------LRDYLTNK---KYFIVLDDVFN-DSDIWDDLEQVLPDNQNGSRVLI 325 (788)
Q Consensus 256 ~~~il~~l~~~~~~~~~~~~~~~~~~~~------l~~~l~~k---r~LlVLDdvw~-~~~~~~~l~~~l~~~~~gskIiv 325 (788)
...+.+.+..-.. ....+.+... --.+++|+ ..+||+|++.+ ...++..+ +...+.|||||+
T Consensus 80 ~~p~~d~l~~~~~-----~~~~~~~~~~~~Ie~~~~~~iRGrt~~~~~iIvDEaQN~t~~~~k~i---lTR~g~~skii~ 151 (205)
T PF02562_consen 80 LRPIYDALEELFG-----KEKLEELIQNGKIEIEPLAFIRGRTFDNAFIIVDEAQNLTPEELKMI---LTRIGEGSKIII 151 (205)
T ss_dssp THHHHHHHTTTS------TTCHHHHHHTTSEEEEEGGGGTT--B-SEEEEE-SGGG--HHHHHHH---HTTB-TT-EEEE
T ss_pred HHHHHHHHHHHhC-----hHhHHHHhhcCeEEEEehhhhcCccccceEEEEecccCCCHHHHHHH---HcccCCCcEEEE
Confidence 1222222221110 1112222110 01234553 56999999974 44555554 444567999999
Q ss_pred ecCCh
Q 003890 326 TVTDL 330 (788)
Q Consensus 326 TTR~~ 330 (788)
+=-..
T Consensus 152 ~GD~~ 156 (205)
T PF02562_consen 152 TGDPS 156 (205)
T ss_dssp EE---
T ss_pred ecCce
Confidence 85543
No 177
>PRK09183 transposase/IS protein; Provisional
Probab=96.60 E-value=0.0047 Score=63.71 Aligned_cols=24 Identities=25% Similarity=0.213 Sum_probs=20.5
Q ss_pred cEEEEEEcCCCChHHHHHHHHHcc
Q 003890 208 LSVVAILNGSGFDKTAFAADTYNN 231 (788)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~~ 231 (788)
-..+.|+|.+|+|||+||..+...
T Consensus 102 ~~~v~l~Gp~GtGKThLa~al~~~ 125 (259)
T PRK09183 102 NENIVLLGPSGVGKTHLAIALGYE 125 (259)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHH
Confidence 346779999999999999999763
No 178
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=96.60 E-value=0.013 Score=64.12 Aligned_cols=47 Identities=17% Similarity=0.140 Sum_probs=38.1
Q ss_pred CCcccchhcHHHHHHHHhcC-----------CCCcEEEEEEcCCCChHHHHHHHHHcc
Q 003890 185 LDISEFERGREELFDLLIEG-----------PSGLSVVAILNGSGFDKTAFAADTYNN 231 (788)
Q Consensus 185 ~~~vGr~~~~~~i~~~L~~~-----------~~~~~vi~I~G~gGiGKTtLa~~v~~~ 231 (788)
.++.|.+..+++|.+.+... -...+-+.++|.+|+|||+||+.+++.
T Consensus 145 ~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~ 202 (398)
T PTZ00454 145 SDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHH 202 (398)
T ss_pred HHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHh
Confidence 78999999999888876421 023567889999999999999999983
No 179
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=96.59 E-value=0.0094 Score=66.48 Aligned_cols=73 Identities=21% Similarity=0.284 Sum_probs=46.7
Q ss_pred cEEEEEEcCCCChHHHHHHHHHcccCcccccc--eeEEEEeCCCCChHHHHHHHHHHcCCCCCCcccccCCHHHHHHHHH
Q 003890 208 LSVVAILNGSGFDKTAFAADTYNNNHIKFYFD--CLAWVRVSIAYDSGKILDDIIKSVMPPSRVSVIIGEDYKLKKTILR 285 (788)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~--~~~wv~vs~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~l~ 285 (788)
..-+.|+|.+|+|||+|++.+++ ++...++ .++|++. .++..++...+... ..+. .+
T Consensus 130 ~n~l~lyG~~G~GKTHLl~ai~~--~l~~~~~~~~v~yi~~------~~f~~~~~~~~~~~---------~~~~----f~ 188 (440)
T PRK14088 130 YNPLFIYGGVGLGKTHLLQSIGN--YVVQNEPDLRVMYITS------EKFLNDLVDSMKEG---------KLNE----FR 188 (440)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHH--HHHHhCCCCeEEEEEH------HHHHHHHHHHHhcc---------cHHH----HH
Confidence 45689999999999999999999 4444433 2566643 45566666555322 1122 23
Q ss_pred HHhcCCcEEEEEeCCC
Q 003890 286 DYLTNKKYFIVLDDVF 301 (788)
Q Consensus 286 ~~l~~kr~LlVLDdvw 301 (788)
+.+..+.-+|++||+.
T Consensus 189 ~~~~~~~dvLlIDDi~ 204 (440)
T PRK14088 189 EKYRKKVDVLLIDDVQ 204 (440)
T ss_pred HHHHhcCCEEEEechh
Confidence 3333345589999996
No 180
>PRK06921 hypothetical protein; Provisional
Probab=96.58 E-value=0.0034 Score=64.96 Aligned_cols=37 Identities=16% Similarity=0.104 Sum_probs=27.9
Q ss_pred cEEEEEEcCCCChHHHHHHHHHcccCcccc-cceeEEEEe
Q 003890 208 LSVVAILNGSGFDKTAFAADTYNNNHIKFY-FDCLAWVRV 246 (788)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-F~~~~wv~v 246 (788)
...+.++|..|+|||+||..+++ .+... -..++|++.
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~--~l~~~~g~~v~y~~~ 154 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAAN--ELMRKKGVPVLYFPF 154 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHH--HHhhhcCceEEEEEH
Confidence 56788999999999999999998 44433 234666653
No 181
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=96.57 E-value=0.029 Score=60.37 Aligned_cols=139 Identities=9% Similarity=0.049 Sum_probs=75.8
Q ss_pred CCcccchhcHHHHHHHHhcCCCCcEEEEEEcCCCChHHHHHHHHHcccCcc--cccceeEEEEeCCCCChHHHHHHHHHH
Q 003890 185 LDISEFERGREELFDLLIEGPSGLSVVAILNGSGFDKTAFAADTYNNNHIK--FYFDCLAWVRVSIAYDSGKILDDIIKS 262 (788)
Q Consensus 185 ~~~vGr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~--~~F~~~~wv~vs~~~~~~~~~~~il~~ 262 (788)
..++|-+...+.+...+..+. ....+-|+|..|+||||+|..+...---. ..+... .....+......+.+...
T Consensus 23 ~~l~Gh~~a~~~L~~a~~~gr-l~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~---~~~~~~~~c~~c~~i~~~ 98 (351)
T PRK09112 23 TRLFGHEEAEAFLAQAYREGK-LHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPE---TLADPDPASPVWRQIAQG 98 (351)
T ss_pred hhccCcHHHHHHHHHHHHcCC-CCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCcc---ccCCCCCCCHHHHHHHcC
Confidence 779999999999999987664 34568899999999999998877631110 001111 001111111222333221
Q ss_pred -------cCCCCCCc---ccccCCHHHHHHHHHHHh-----cCCcEEEEEeCCCC-ChhhHHHHhhhcCCCCCCcEEEEe
Q 003890 263 -------VMPPSRVS---VIIGEDYKLKKTILRDYL-----TNKKYFIVLDDVFN-DSDIWDDLEQVLPDNQNGSRVLIT 326 (788)
Q Consensus 263 -------l~~~~~~~---~~~~~~~~~~~~~l~~~l-----~~kr~LlVLDdvw~-~~~~~~~l~~~l~~~~~gskIivT 326 (788)
+....... .......+++. .+.+++ .+++-++|+|++.. +....+.+...+.....+..+|++
T Consensus 99 ~hPdl~~l~~~~~~~~~~~~~~I~vd~iR-~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEEpp~~~~fiLi 177 (351)
T PRK09112 99 AHPNLLHITRPFDEKTGKFKTAITVDEIR-RVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEPPARALFILI 177 (351)
T ss_pred CCCCEEEeecccccccccccccCCHHHHH-HHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhcCCCCceEEEE
Confidence 10000000 00122344433 344444 35677999999963 455667777777654445554444
Q ss_pred cC
Q 003890 327 VT 328 (788)
Q Consensus 327 TR 328 (788)
|.
T Consensus 178 t~ 179 (351)
T PRK09112 178 SH 179 (351)
T ss_pred EC
Confidence 43
No 182
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.56 E-value=0.015 Score=64.01 Aligned_cols=95 Identities=21% Similarity=0.268 Sum_probs=61.9
Q ss_pred EEEEEcCCCChHHHHHHHHHcccCcccccceeEEEEeCCC-CChHHHHHHHHHHcCCCCCCcccccCCHHHHHHHHHHHh
Q 003890 210 VVAILNGSGFDKTAFAADTYNNNHIKFYFDCLAWVRVSIA-YDSGKILDDIIKSVMPPSRVSVIIGEDYKLKKTILRDYL 288 (788)
Q Consensus 210 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~-~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~~l 288 (788)
++.|+|+-++||||+++.+... ..+. .+++..-+. .+..++ .+.+ ..+.+.-
T Consensus 39 i~~i~GpR~~GKTtll~~l~~~--~~~~---~iy~~~~d~~~~~~~l-~d~~---------------------~~~~~~~ 91 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIKG--LLEE---IIYINFDDLRLDRIEL-LDLL---------------------RAYIELK 91 (398)
T ss_pred EEEEECCccccHHHHHHHHHhh--CCcc---eEEEEecchhcchhhH-HHHH---------------------HHHHHhh
Confidence 9999999999999999777663 2222 455443222 111111 1111 1111111
Q ss_pred cCCcEEEEEeCCCCChhhHHHHhhhcCCCCCCcEEEEecCChHHH
Q 003890 289 TNKKYFIVLDDVFNDSDIWDDLEQVLPDNQNGSRVLITVTDLDLL 333 (788)
Q Consensus 289 ~~kr~LlVLDdvw~~~~~~~~l~~~l~~~~~gskIivTTR~~~v~ 333 (788)
..++.+++||.|. ....|+.....+.+.++. +|++|+-+..+.
T Consensus 92 ~~~~~yifLDEIq-~v~~W~~~lk~l~d~~~~-~v~itgsss~ll 134 (398)
T COG1373 92 EREKSYIFLDEIQ-NVPDWERALKYLYDRGNL-DVLITGSSSSLL 134 (398)
T ss_pred ccCCceEEEeccc-CchhHHHHHHHHHccccc-eEEEECCchhhh
Confidence 2278899999998 889999999988877766 899998875543
No 183
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=96.56 E-value=0.0019 Score=68.54 Aligned_cols=47 Identities=13% Similarity=0.147 Sum_probs=41.0
Q ss_pred CCcccchhcHHHHHHHHhcC----CCCcEEEEEEcCCCChHHHHHHHHHcc
Q 003890 185 LDISEFERGREELFDLLIEG----PSGLSVVAILNGSGFDKTAFAADTYNN 231 (788)
Q Consensus 185 ~~~vGr~~~~~~i~~~L~~~----~~~~~vi~I~G~gGiGKTtLa~~v~~~ 231 (788)
.+++|.++.++++++++... +...+++.++|++|+||||||+.+.+.
T Consensus 51 ~~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~ 101 (361)
T smart00763 51 HDFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRG 101 (361)
T ss_pred hhccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 48999999999999999653 234689999999999999999999984
No 184
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=96.55 E-value=0.0046 Score=69.22 Aligned_cols=47 Identities=21% Similarity=0.157 Sum_probs=38.0
Q ss_pred CCcccchhcHHHHHHHHhcC-----------CCCcEEEEEEcCCCChHHHHHHHHHcc
Q 003890 185 LDISEFERGREELFDLLIEG-----------PSGLSVVAILNGSGFDKTAFAADTYNN 231 (788)
Q Consensus 185 ~~~vGr~~~~~~i~~~L~~~-----------~~~~~vi~I~G~gGiGKTtLa~~v~~~ 231 (788)
.++.|.+..+++|.+.+... -...+-+-++|++|+|||++|+.+++.
T Consensus 182 ~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~e 239 (512)
T TIGR03689 182 ADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANS 239 (512)
T ss_pred HHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHh
Confidence 77889999999998886421 123456889999999999999999994
No 185
>PRK10865 protein disaggregation chaperone; Provisional
Probab=96.54 E-value=0.0083 Score=72.47 Aligned_cols=45 Identities=11% Similarity=0.087 Sum_probs=38.2
Q ss_pred CCcccchhcHHHHHHHHhcCCCCcEEEEEEcCCCChHHHHHHHHHcc
Q 003890 185 LDISEFERGREELFDLLIEGPSGLSVVAILNGSGFDKTAFAADTYNN 231 (788)
Q Consensus 185 ~~~vGr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 231 (788)
..++||+.++.++++.|.... ..-+.++|.+|+|||++|+.+...
T Consensus 178 ~~vigr~~ei~~~i~iL~r~~--~~n~lL~G~pGvGKT~l~~~la~~ 222 (857)
T PRK10865 178 DPVIGRDEEIRRTIQVLQRRT--KNNPVLIGEPGVGKTAIVEGLAQR 222 (857)
T ss_pred CcCCCCHHHHHHHHHHHhcCC--cCceEEECCCCCCHHHHHHHHHHH
Confidence 669999999999999998765 334558999999999999998873
No 186
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=96.54 E-value=0.023 Score=65.16 Aligned_cols=137 Identities=9% Similarity=-0.026 Sum_probs=75.2
Q ss_pred CCCCCcccchhcHHHHHHHHhcCCCCcEEEEEEcCCCChHHHHHHHHHcccCcc---cccceeEEEEeCCCCChHHHHHH
Q 003890 182 QPRLDISEFERGREELFDLLIEGPSGLSVVAILNGSGFDKTAFAADTYNNNHIK---FYFDCLAWVRVSIAYDSGKILDD 258 (788)
Q Consensus 182 ~~~~~~vGr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~---~~F~~~~wv~vs~~~~~~~~~~~ 258 (788)
..+.+++|-+..++.+..++..+. -...+-++|..|+||||+|+.+....--. ..++| ... ...+.
T Consensus 13 ~~f~diiGqe~iv~~L~~~i~~~~-i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC------~~C----~~C~~ 81 (563)
T PRK06647 13 RDFNSLEGQDFVVETLKHSIESNK-IANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPC------GEC----SSCKS 81 (563)
T ss_pred CCHHHccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCC------ccc----hHHHH
Confidence 344789999999999999997654 34567899999999999999988731111 01111 000 00111
Q ss_pred HHHHcCCCCCCcc-cccCCHHHHHHHH---HH-HhcCCcEEEEEeCCCC-ChhhHHHHhhhcCCCCCCcEEEEecCC
Q 003890 259 IIKSVMPPSRVSV-IIGEDYKLKKTIL---RD-YLTNKKYFIVLDDVFN-DSDIWDDLEQVLPDNQNGSRVLITVTD 329 (788)
Q Consensus 259 il~~l~~~~~~~~-~~~~~~~~~~~~l---~~-~l~~kr~LlVLDdvw~-~~~~~~~l~~~l~~~~~gskIivTTR~ 329 (788)
|...-........ ......+++.... .. -..+++-++|+|++.. +...++.+...+......+.+|.+|.+
T Consensus 82 i~~~~~~dv~~idgas~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~~tte 158 (563)
T PRK06647 82 IDNDNSLDVIEIDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTE 158 (563)
T ss_pred HHcCCCCCeEEecCcccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEEEecCC
Confidence 1110000000000 0012233332222 11 1235666899999952 456778888887765556666665543
No 187
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=96.53 E-value=0.0086 Score=61.03 Aligned_cols=95 Identities=12% Similarity=0.088 Sum_probs=55.5
Q ss_pred CCcEEEEEEcCCCChHHHHHHHHHcccCcccc----cceeEEEEeCCCCChHHHHHHHHHHcCCCCCC-----cccccCC
Q 003890 206 SGLSVVAILNGSGFDKTAFAADTYNNNHIKFY----FDCLAWVRVSIAYDSGKILDDIIKSVMPPSRV-----SVIIGED 276 (788)
Q Consensus 206 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~----F~~~~wv~vs~~~~~~~~~~~il~~l~~~~~~-----~~~~~~~ 276 (788)
..-.++.|+|.+|+|||+||.+++........ -..++|++....++..++.+ +++........ ......+
T Consensus 17 ~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl~~-~~~~~~~~~~~~~~~i~~~~~~~ 95 (235)
T cd01123 17 ETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERLVQ-IAERFGLDPEEVLDNIYVARAYN 95 (235)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHHHH-HHHHhccChHhHhcCEEEEecCC
Confidence 34679999999999999999998753222221 35699998877777655443 33333221110 0001122
Q ss_pred HHH---HHHHHHHHhc-C-CcEEEEEeCCC
Q 003890 277 YKL---KKTILRDYLT-N-KKYFIVLDDVF 301 (788)
Q Consensus 277 ~~~---~~~~l~~~l~-~-kr~LlVLDdvw 301 (788)
.++ ....+.+.+. . +--|||+|-+.
T Consensus 96 ~~~l~~~l~~l~~~l~~~~~~~liVIDSis 125 (235)
T cd01123 96 SDHQLQLLEELEAILIESSRIKLVIVDSVT 125 (235)
T ss_pred HHHHHHHHHHHHHHHhhcCCeeEEEEeCcH
Confidence 233 3344444453 3 56689999884
No 188
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=96.53 E-value=0.0067 Score=72.36 Aligned_cols=45 Identities=18% Similarity=0.085 Sum_probs=38.0
Q ss_pred CCcccchhcHHHHHHHHhcCCCCcEEEEEEcCCCChHHHHHHHHHcc
Q 003890 185 LDISEFERGREELFDLLIEGPSGLSVVAILNGSGFDKTAFAADTYNN 231 (788)
Q Consensus 185 ~~~vGr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 231 (788)
..++||+.+++++++.|.... ..-+.++|.+|+|||++|+.++..
T Consensus 182 ~~~igr~~ei~~~~~~L~~~~--~~n~lL~G~pG~GKT~l~~~la~~ 226 (731)
T TIGR02639 182 DPLIGREDELERTIQVLCRRK--KNNPLLVGEPGVGKTAIAEGLALR 226 (731)
T ss_pred CcccCcHHHHHHHHHHHhcCC--CCceEEECCCCCCHHHHHHHHHHH
Confidence 679999999999999987654 334568999999999999999873
No 189
>PRK07952 DNA replication protein DnaC; Validated
Probab=96.52 E-value=0.012 Score=59.85 Aligned_cols=116 Identities=10% Similarity=0.121 Sum_probs=60.2
Q ss_pred HHHHHHHHhcCCCCcEEEEEEcCCCChHHHHHHHHHcccCcccccceeEEEEeCCCCChHHHHHHHHHHcCCCCCCcccc
Q 003890 194 REELFDLLIEGPSGLSVVAILNGSGFDKTAFAADTYNNNHIKFYFDCLAWVRVSIAYDSGKILDDIIKSVMPPSRVSVII 273 (788)
Q Consensus 194 ~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~~l~~~~~~~~~~ 273 (788)
+..+.++...-..+...+.++|.+|+|||+||..+++. ....-..+++++ +.++...+-..... .
T Consensus 85 l~~a~~~~~~~~~~~~~~~l~G~~GtGKThLa~aia~~--l~~~g~~v~~it------~~~l~~~l~~~~~~-------~ 149 (244)
T PRK07952 85 LSKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICNE--LLLRGKSVLIIT------VADIMSAMKDTFSN-------S 149 (244)
T ss_pred HHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHH--HHhcCCeEEEEE------HHHHHHHHHHHHhh-------c
Confidence 44444444332223457889999999999999999984 333223455653 34444444333321 1
Q ss_pred cCCHHHHHHHHHHHhcCCcEEEEEeCCCC-ChhhHHH--HhhhcCCC-CCCcEEEEecCC
Q 003890 274 GEDYKLKKTILRDYLTNKKYFIVLDDVFN-DSDIWDD--LEQVLPDN-QNGSRVLITVTD 329 (788)
Q Consensus 274 ~~~~~~~~~~l~~~l~~kr~LlVLDdvw~-~~~~~~~--l~~~l~~~-~~gskIivTTR~ 329 (788)
..+.+. +.+.+. +.=+||+||+.. ...+|+. +...+... ...-.+||||..
T Consensus 150 ~~~~~~----~l~~l~-~~dlLvIDDig~~~~s~~~~~~l~~Ii~~Ry~~~~~tiitSNl 204 (244)
T PRK07952 150 ETSEEQ----LLNDLS-NVDLLVIDEIGVQTESRYEKVIINQIVDRRSSSKRPTGMLTNS 204 (244)
T ss_pred cccHHH----HHHHhc-cCCEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCCEEEeCCC
Confidence 111222 333344 344888899962 2344543 22222211 112346777764
No 190
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=96.51 E-value=0.0018 Score=58.41 Aligned_cols=22 Identities=23% Similarity=0.311 Sum_probs=20.5
Q ss_pred EEEEEcCCCChHHHHHHHHHcc
Q 003890 210 VVAILNGSGFDKTAFAADTYNN 231 (788)
Q Consensus 210 vi~I~G~gGiGKTtLa~~v~~~ 231 (788)
||+|.|++|+||||+|+.+.+.
T Consensus 1 vI~I~G~~gsGKST~a~~La~~ 22 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAER 22 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999983
No 191
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=96.49 E-value=0.021 Score=61.23 Aligned_cols=123 Identities=10% Similarity=0.075 Sum_probs=75.4
Q ss_pred CcccchhcHHHHHHHHhcCCCCcEEEEEEcCCCChHHHHHHHHHcccCccc-------------------ccceeEEEEe
Q 003890 186 DISEFERGREELFDLLIEGPSGLSVVAILNGSGFDKTAFAADTYNNNHIKF-------------------YFDCLAWVRV 246 (788)
Q Consensus 186 ~~vGr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-------------------~F~~~~wv~v 246 (788)
+++|-+....++..+..........+-++|++|+||||+|..+.+.-.-.. ..+.+..+.-
T Consensus 2 ~~~~~~~~~~~l~~~~~~~~~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~~ 81 (325)
T COG0470 2 ELVPWQEAVKRLLVQALESGRLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELNP 81 (325)
T ss_pred CcccchhHHHHHHHHHHhcCCCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEecc
Confidence 467778888888888875543344588999999999999988887311000 1233444444
Q ss_pred CCCCC---hHHHHHHHHHHcCCCCCCcccccCCHHHHHHHHHHHhcCCcEEEEEeCCCC-ChhhHHHHhhhcCCCCCCcE
Q 003890 247 SIAYD---SGKILDDIIKSVMPPSRVSVIIGEDYKLKKTILRDYLTNKKYFIVLDDVFN-DSDIWDDLEQVLPDNQNGSR 322 (788)
Q Consensus 247 s~~~~---~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVLDdvw~-~~~~~~~l~~~l~~~~~gsk 322 (788)
|.... ..+..+++.+....... .++.-++++|++.. ..+.-..+...+......+.
T Consensus 82 s~~~~~~i~~~~vr~~~~~~~~~~~--------------------~~~~kviiidead~mt~~A~nallk~lEep~~~~~ 141 (325)
T COG0470 82 SDLRKIDIIVEQVRELAEFLSESPL--------------------EGGYKVVIIDEADKLTEDAANALLKTLEEPPKNTR 141 (325)
T ss_pred cccCCCcchHHHHHHHHHHhccCCC--------------------CCCceEEEeCcHHHHhHHHHHHHHHHhccCCCCeE
Confidence 44433 23333333333322210 35677899999962 34455566666666666778
Q ss_pred EEEecC
Q 003890 323 VLITVT 328 (788)
Q Consensus 323 IivTTR 328 (788)
+|++|.
T Consensus 142 ~il~~n 147 (325)
T COG0470 142 FILITN 147 (325)
T ss_pred EEEEcC
Confidence 887777
No 192
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=96.47 E-value=0.017 Score=68.91 Aligned_cols=46 Identities=15% Similarity=0.257 Sum_probs=39.1
Q ss_pred CCcccchhcHHHHHHHHhcC----CCCcEEEEEEcCCCChHHHHHHHHHc
Q 003890 185 LDISEFERGREELFDLLIEG----PSGLSVVAILNGSGFDKTAFAADTYN 230 (788)
Q Consensus 185 ~~~vGr~~~~~~i~~~L~~~----~~~~~vi~I~G~gGiGKTtLa~~v~~ 230 (788)
.+.+|.++.++.|+++|... .....++.++|++|+||||+|+.+..
T Consensus 322 ~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~ 371 (784)
T PRK10787 322 TDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAK 371 (784)
T ss_pred hhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHH
Confidence 66899999999999988631 22356899999999999999999997
No 193
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=96.45 E-value=0.011 Score=59.87 Aligned_cols=92 Identities=10% Similarity=0.051 Sum_probs=52.1
Q ss_pred CCcEEEEEEcCCCChHHHHHHHHHcccCcccccceeEEEEeCCCCChHHHHHHHHHH-cCCCC-CCcccccCCHHH---H
Q 003890 206 SGLSVVAILNGSGFDKTAFAADTYNNNHIKFYFDCLAWVRVSIAYDSGKILDDIIKS-VMPPS-RVSVIIGEDYKL---K 280 (788)
Q Consensus 206 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~~-l~~~~-~~~~~~~~~~~~---~ 280 (788)
..-.++.|+|.+|+|||++|.+++.. ....-..++|++.. .++..++. ++... +.... ........+..+ .
T Consensus 21 ~~g~i~~i~G~~GsGKT~l~~~la~~--~~~~~~~v~yi~~e-~~~~~r~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (225)
T PRK09361 21 ERGTITQIYGPPGSGKTNICLQLAVE--AAKNGKKVIYIDTE-GLSPERFK-QIAGEDFEELLSNIIIFEPSSFEEQSEA 96 (225)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH--HHHCCCeEEEEECC-CCCHHHHH-HHHhhChHhHhhCeEEEeCCCHHHHHHH
Confidence 34679999999999999999988863 32334568899876 55555443 23222 00000 000001222222 2
Q ss_pred HHHHHHHhcCCcEEEEEeCCC
Q 003890 281 KTILRDYLTNKKYFIVLDDVF 301 (788)
Q Consensus 281 ~~~l~~~l~~kr~LlVLDdvw 301 (788)
...+.+.++.+--++|+|.+-
T Consensus 97 i~~~~~~~~~~~~lvVIDsi~ 117 (225)
T PRK09361 97 IRKAEKLAKENVGLIVLDSAT 117 (225)
T ss_pred HHHHHHHHHhcccEEEEeCcH
Confidence 333444444566688999883
No 194
>PRK05541 adenylylsulfate kinase; Provisional
Probab=96.44 E-value=0.012 Score=57.10 Aligned_cols=36 Identities=22% Similarity=0.319 Sum_probs=28.8
Q ss_pred CcEEEEEEcCCCChHHHHHHHHHcccCcccccceeEEE
Q 003890 207 GLSVVAILNGSGFDKTAFAADTYNNNHIKFYFDCLAWV 244 (788)
Q Consensus 207 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv 244 (788)
...+|.+.|+.|+||||+|+.+++ +....+...+++
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~--~l~~~~~~~~~~ 41 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYE--RLKLKYSNVIYL 41 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHH--HHHHcCCcEEEE
Confidence 356999999999999999999998 555556555555
No 195
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=96.43 E-value=0.0073 Score=72.74 Aligned_cols=44 Identities=14% Similarity=0.120 Sum_probs=37.9
Q ss_pred CCcccchhcHHHHHHHHhcCCCCcEEEEEEcCCCChHHHHHHHHHc
Q 003890 185 LDISEFERGREELFDLLIEGPSGLSVVAILNGSGFDKTAFAADTYN 230 (788)
Q Consensus 185 ~~~vGr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 230 (788)
..++||+.++.++++.|.... ..-+.++|.+|+||||+|+.+..
T Consensus 187 d~~iGr~~ei~~~i~~l~r~~--~~n~lLvG~pGvGKTal~~~La~ 230 (852)
T TIGR03345 187 DPVLGRDDEIRQMIDILLRRR--QNNPILTGEAGVGKTAVVEGLAL 230 (852)
T ss_pred CcccCCHHHHHHHHHHHhcCC--cCceeEECCCCCCHHHHHHHHHH
Confidence 679999999999999997764 33445899999999999999887
No 196
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=96.43 E-value=0.0086 Score=66.43 Aligned_cols=100 Identities=16% Similarity=0.251 Sum_probs=54.3
Q ss_pred cEEEEEEcCCCChHHHHHHHHHcccCcccccc--eeEEEEeCCCCChHHHHHHHHHHcCCCCCCcccccCCHHHHHHHHH
Q 003890 208 LSVVAILNGSGFDKTAFAADTYNNNHIKFYFD--CLAWVRVSIAYDSGKILDDIIKSVMPPSRVSVIIGEDYKLKKTILR 285 (788)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~--~~~wv~vs~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~l~ 285 (788)
...+.|+|..|+|||+|++.+++ ++....+ .++|++ ..++...+...+... ..+. +.
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~--~l~~~~~~~~v~yi~------~~~~~~~~~~~~~~~---------~~~~----~~ 194 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGN--EILENNPNAKVVYVS------SEKFTNDFVNALRNN---------KMEE----FK 194 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHH--HHHHhCCCCcEEEEE------HHHHHHHHHHHHHcC---------CHHH----HH
Confidence 45688999999999999999998 4444332 255553 334444555544321 1222 23
Q ss_pred HHhcCCcEEEEEeCCCC--ChhhH-HHHhhhcCCC-CCCcEEEEecCC
Q 003890 286 DYLTNKKYFIVLDDVFN--DSDIW-DDLEQVLPDN-QNGSRVLITVTD 329 (788)
Q Consensus 286 ~~l~~kr~LlVLDdvw~--~~~~~-~~l~~~l~~~-~~gskIivTTR~ 329 (788)
+.+++ .-+||+||+.. ....+ +.+...+... ..|..||+||..
T Consensus 195 ~~~~~-~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~ 241 (405)
T TIGR00362 195 EKYRS-VDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDR 241 (405)
T ss_pred HHHHh-CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCC
Confidence 33332 23888999962 11111 2233322211 234567777764
No 197
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=96.42 E-value=0.0095 Score=67.01 Aligned_cols=93 Identities=13% Similarity=0.152 Sum_probs=52.2
Q ss_pred cccchhc--HHHHHHHHhcCCCCcEEEEEEcCCCChHHHHHHHHHcccCcccccce--eEEEEeCCCCChHHHHHHHHHH
Q 003890 187 ISEFERG--REELFDLLIEGPSGLSVVAILNGSGFDKTAFAADTYNNNHIKFYFDC--LAWVRVSIAYDSGKILDDIIKS 262 (788)
Q Consensus 187 ~vGr~~~--~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~--~~wv~vs~~~~~~~~~~~il~~ 262 (788)
++|.... ......+....+.....+.|+|.+|+|||+|++.+++ ++...++. ++|++. ..+...+...
T Consensus 125 v~g~~n~~a~~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~ai~~--~~~~~~~~~~v~yi~~------~~~~~~~~~~ 196 (450)
T PRK00149 125 VVGKSNRLAHAAALAVAENPGKAYNPLFIYGGVGLGKTHLLHAIGN--YILEKNPNAKVVYVTS------EKFTNDFVNA 196 (450)
T ss_pred ccCCCcHHHHHHHHHHHhCcCccCCeEEEECCCCCCHHHHHHHHHH--HHHHhCCCCeEEEEEH------HHHHHHHHHH
Confidence 4564332 3333333333222345688999999999999999999 45555433 455533 3334444444
Q ss_pred cCCCCCCcccccCCHHHHHHHHHHHhcCCcEEEEEeCCC
Q 003890 263 VMPPSRVSVIIGEDYKLKKTILRDYLTNKKYFIVLDDVF 301 (788)
Q Consensus 263 l~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVLDdvw 301 (788)
+... ..+ .+.+.++ +--+||+||+.
T Consensus 197 ~~~~---------~~~----~~~~~~~-~~dlLiiDDi~ 221 (450)
T PRK00149 197 LRNN---------TME----EFKEKYR-SVDVLLIDDIQ 221 (450)
T ss_pred HHcC---------cHH----HHHHHHh-cCCEEEEehhh
Confidence 4221 112 2333333 34489999995
No 198
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=96.38 E-value=0.026 Score=57.11 Aligned_cols=93 Identities=11% Similarity=0.088 Sum_probs=57.3
Q ss_pred CCcEEEEEEcCCCChHHHHHHHHHcccCccccc------ceeEEEEeCCCCChHHHHHHHHHHcCCCCCC-----ccccc
Q 003890 206 SGLSVVAILNGSGFDKTAFAADTYNNNHIKFYF------DCLAWVRVSIAYDSGKILDDIIKSVMPPSRV-----SVIIG 274 (788)
Q Consensus 206 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F------~~~~wv~vs~~~~~~~~~~~il~~l~~~~~~-----~~~~~ 274 (788)
..-.++.|+|.+|+|||+||.++... ....- ..++|++....++..++. .+.......... .....
T Consensus 17 ~~g~v~~I~G~~GsGKT~l~~~ia~~--~~~~~~~~g~~~~v~yi~~e~~~~~~rl~-~~~~~~~~~~~~~~~~i~~~~~ 93 (226)
T cd01393 17 PTGRITEIFGEFGSGKTQLCLQLAVE--AQLPGELGGLEGKVVYIDTEGAFRPERLV-QLAVRFGLDPEEVLDNIYVARP 93 (226)
T ss_pred cCCcEEEEeCCCCCChhHHHHHHHHH--hhcccccCCCcceEEEEecCCCCCHHHHH-HHHHHhccchhhhhccEEEEeC
Confidence 34679999999999999999988763 22222 347898887777765554 333332211100 00123
Q ss_pred CCHHHHHHHHHHHhc---C-CcEEEEEeCCC
Q 003890 275 EDYKLKKTILRDYLT---N-KKYFIVLDDVF 301 (788)
Q Consensus 275 ~~~~~~~~~l~~~l~---~-kr~LlVLDdvw 301 (788)
.+.+++...+.+..+ . +--|+|+|.+.
T Consensus 94 ~~~~~~~~~l~~~~~~~~~~~~~lvVIDsis 124 (226)
T cd01393 94 YNGEQQLEIVEELERIMSSGRVDLVVVDSVA 124 (226)
T ss_pred CCHHHHHHHHHHHHHHhhcCCeeEEEEcCcc
Confidence 455666666666553 3 44589999984
No 199
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.37 E-value=0.025 Score=53.59 Aligned_cols=40 Identities=18% Similarity=0.200 Sum_probs=29.2
Q ss_pred EEEEEcCCCChHHHHHHHHHcccCcccccceeEEEEeCCCCC
Q 003890 210 VVAILNGSGFDKTAFAADTYNNNHIKFYFDCLAWVRVSIAYD 251 (788)
Q Consensus 210 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~ 251 (788)
++.|+|.+|+||||+++.+... ....-..++|+.......
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~--~~~~~~~v~~~~~e~~~~ 40 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALN--IATKGGKVVYVDIEEEIE 40 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHH--HHhcCCEEEEEECCcchH
Confidence 4689999999999999999873 333334577877765543
No 200
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=96.34 E-value=0.007 Score=71.50 Aligned_cols=116 Identities=16% Similarity=0.232 Sum_probs=66.7
Q ss_pred CCcccchhcHHHHHHHHhcC-------CCCcEEEEEEcCCCChHHHHHHHHHcccCcccccceeEEEEeCCCCChHHHHH
Q 003890 185 LDISEFERGREELFDLLIEG-------PSGLSVVAILNGSGFDKTAFAADTYNNNHIKFYFDCLAWVRVSIAYDSGKILD 257 (788)
Q Consensus 185 ~~~vGr~~~~~~i~~~L~~~-------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~ 257 (788)
..++|-+..++.|.+.+... ......+-++|++|+|||++|+.+... ... ..+.++.+.-.+... ..
T Consensus 458 ~~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~--l~~---~~i~id~se~~~~~~-~~ 531 (758)
T PRK11034 458 MLVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKA--LGI---ELLRFDMSEYMERHT-VS 531 (758)
T ss_pred ceEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHH--hCC---CcEEeechhhccccc-HH
Confidence 56899999999999888631 223567889999999999999999873 322 234444443322111 11
Q ss_pred HHHHHcCCCCCCcccccCCHHHHHHHHHHHhcC-CcEEEEEeCCCC-ChhhHHHHhhhcC
Q 003890 258 DIIKSVMPPSRVSVIIGEDYKLKKTILRDYLTN-KKYFIVLDDVFN-DSDIWDDLEQVLP 315 (788)
Q Consensus 258 ~il~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~-kr~LlVLDdvw~-~~~~~~~l~~~l~ 315 (788)
.+ ++.+... ...+ ....+.+.++. ...+|+||++.. +++.++.+...+.
T Consensus 532 ~L---iG~~~gy---vg~~---~~g~L~~~v~~~p~sVlllDEieka~~~v~~~LLq~ld 582 (758)
T PRK11034 532 RL---IGAPPGY---VGFD---QGGLLTDAVIKHPHAVLLLDEIEKAHPDVFNLLLQVMD 582 (758)
T ss_pred HH---cCCCCCc---cccc---ccchHHHHHHhCCCcEEEeccHhhhhHHHHHHHHHHHh
Confidence 11 2211110 0001 11123333333 456999999962 4566777776654
No 201
>PRK06526 transposase; Provisional
Probab=96.34 E-value=0.0059 Score=62.61 Aligned_cols=24 Identities=25% Similarity=0.126 Sum_probs=20.8
Q ss_pred cEEEEEEcCCCChHHHHHHHHHcc
Q 003890 208 LSVVAILNGSGFDKTAFAADTYNN 231 (788)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~~ 231 (788)
..-+.++|.+|+|||+||..+...
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~ 121 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIR 121 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHH
Confidence 345789999999999999999873
No 202
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.33 E-value=0.00096 Score=66.14 Aligned_cols=39 Identities=18% Similarity=0.194 Sum_probs=17.7
Q ss_pred CCCCCCCeEEEEccC--CcChhcHHHhccCCCCCCEEEeec
Q 003890 660 GRLPNVQTLRISGDL--SCYHSGVSKSLCELHKLECLKLVN 698 (788)
Q Consensus 660 ~~L~~L~~L~l~~~~--~~~~~~~~~~l~~l~~L~~L~L~~ 698 (788)
..+.+|+.|+|..|. ......+...+..++.|+.|.+..
T Consensus 211 ~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnD 251 (388)
T COG5238 211 FYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLND 251 (388)
T ss_pred HHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccc
Confidence 344555555555543 011122333444555555555553
No 203
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=96.33 E-value=0.013 Score=58.47 Aligned_cols=92 Identities=11% Similarity=0.057 Sum_probs=53.0
Q ss_pred CCcEEEEEEcCCCChHHHHHHHHHcccCcccccceeEEEEeCCCCChHHHHHHHHHHcCCCC-CC-cccccCCH---HHH
Q 003890 206 SGLSVVAILNGSGFDKTAFAADTYNNNHIKFYFDCLAWVRVSIAYDSGKILDDIIKSVMPPS-RV-SVIIGEDY---KLK 280 (788)
Q Consensus 206 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~~l~~~~-~~-~~~~~~~~---~~~ 280 (788)
..-+++-|+|.+|+|||++|.++... ....-..++|++... ++..++.+ +.+...... .. ......+. ...
T Consensus 10 ~~g~i~~i~G~~GsGKT~l~~~~~~~--~~~~g~~v~yi~~e~-~~~~rl~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~ 85 (209)
T TIGR02237 10 ERGTITQIYGPPGSGKTNICMILAVN--AARQGKKVVYIDTEG-LSPERFKQ-IAEDRPERALSNFIVFEVFDFDEQGVA 85 (209)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH--HHhCCCeEEEEECCC-CCHHHHHH-HHHhChHHHhcCEEEEECCCHHHHHHH
Confidence 34689999999999999999888763 333345689998865 66555543 333220000 00 00011222 223
Q ss_pred HHHHHHHhcC-CcEEEEEeCCC
Q 003890 281 KTILRDYLTN-KKYFIVLDDVF 301 (788)
Q Consensus 281 ~~~l~~~l~~-kr~LlVLDdvw 301 (788)
...+.+.+.. +.-+||+|-+-
T Consensus 86 ~~~l~~~~~~~~~~lvVIDSis 107 (209)
T TIGR02237 86 IQKTSKFIDRDSASLVVVDSFT 107 (209)
T ss_pred HHHHHHHHhhcCccEEEEeCcH
Confidence 4445555543 45588888874
No 204
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.32 E-value=0.026 Score=55.44 Aligned_cols=114 Identities=18% Similarity=0.201 Sum_probs=72.9
Q ss_pred CCcccchhcHHHHHHHHh---cCCCCcEEEEEEcCCCChHHHHHHHHHcccCcccccceeEEEEeCCCCChHHHHHHHHH
Q 003890 185 LDISEFERGREELFDLLI---EGPSGLSVVAILNGSGFDKTAFAADTYNNNHIKFYFDCLAWVRVSIAYDSGKILDDIIK 261 (788)
Q Consensus 185 ~~~vGr~~~~~~i~~~L~---~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~ 261 (788)
..++|.|..++.+++--. .+. ...-|-+||.-|.||+.|++++.+ ++....-. -|.|++.
T Consensus 60 ~~l~Gvd~qk~~L~~NT~~F~~G~-pANnVLLwGaRGtGKSSLVKA~~~--e~~~~glr--LVEV~k~------------ 122 (287)
T COG2607 60 ADLVGVDRQKEALVRNTEQFAEGL-PANNVLLWGARGTGKSSLVKALLN--EYADEGLR--LVEVDKE------------ 122 (287)
T ss_pred HHHhCchHHHHHHHHHHHHHHcCC-cccceEEecCCCCChHHHHHHHHH--HHHhcCCe--EEEEcHH------------
Confidence 789999999888876542 232 345567999999999999999998 45544433 2223222
Q ss_pred HcCCCCCCcccccCCHHHHHHHHHHHh--cCCcEEEEEeCCCC--ChhhHHHHhhhcCCC---CCCcEEEEecCCh
Q 003890 262 SVMPPSRVSVIIGEDYKLKKTILRDYL--TNKKYFIVLDDVFN--DSDIWDDLEQVLPDN---QNGSRVLITVTDL 330 (788)
Q Consensus 262 ~l~~~~~~~~~~~~~~~~~~~~l~~~l--~~kr~LlVLDdvw~--~~~~~~~l~~~l~~~---~~gskIivTTR~~ 330 (788)
+...+ ..|.+.| ..+||.|..||..- +......++..+..+ .+...++..|.++
T Consensus 123 --------------dl~~L-p~l~~~Lr~~~~kFIlFcDDLSFe~gd~~yK~LKs~LeG~ve~rP~NVl~YATSNR 183 (287)
T COG2607 123 --------------DLATL-PDLVELLRARPEKFILFCDDLSFEEGDDAYKALKSALEGGVEGRPANVLFYATSNR 183 (287)
T ss_pred --------------HHhhH-HHHHHHHhcCCceEEEEecCCCCCCCchHHHHHHHHhcCCcccCCCeEEEEEecCC
Confidence 11111 1222233 35899999999963 456777888877643 3556666666553
No 205
>PRK06835 DNA replication protein DnaC; Validated
Probab=96.30 E-value=0.012 Score=62.64 Aligned_cols=36 Identities=8% Similarity=0.013 Sum_probs=26.5
Q ss_pred EEEEEEcCCCChHHHHHHHHHcccCcccccceeEEEEe
Q 003890 209 SVVAILNGSGFDKTAFAADTYNNNHIKFYFDCLAWVRV 246 (788)
Q Consensus 209 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v 246 (788)
.-+.++|.+|+|||+||..+++. +...-..++|+++
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~--l~~~g~~V~y~t~ 219 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKE--LLDRGKSVIYRTA 219 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHH--HHHCCCeEEEEEH
Confidence 66899999999999999999984 3222224566543
No 206
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=96.30 E-value=0.0072 Score=59.24 Aligned_cols=79 Identities=16% Similarity=0.098 Sum_probs=47.3
Q ss_pred CcEEEEEEcCCCChHHHHHHHHHcccCcccccceeEEEEeCCCCChHHHHHHHHHHcCCCCCCcccccCCHHHHHHHHHH
Q 003890 207 GLSVVAILNGSGFDKTAFAADTYNNNHIKFYFDCLAWVRVSIAYDSGKILDDIIKSVMPPSRVSVIIGEDYKLKKTILRD 286 (788)
Q Consensus 207 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~ 286 (788)
++.+|||-|.+|+||||+|+.+++ .++..+. .-++...-|. ..-....... ....-..+...+.+-+...|..
T Consensus 7 ~~iiIgIaG~SgSGKTTva~~l~~--~~~~~~~--~~I~~D~YYk-~~~~~~~~~~--~~~n~d~p~A~D~dLl~~~L~~ 79 (218)
T COG0572 7 KVIIIGIAGGSGSGKTTVAKELSE--QLGVEKV--VVISLDDYYK-DQSHLPFEER--NKINYDHPEAFDLDLLIEHLKD 79 (218)
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHH--HhCcCcc--eEeecccccc-chhhcCHhhc--CCcCccChhhhcHHHHHHHHHH
Confidence 468999999999999999999998 4554421 2221111111 1001111111 1111134567788888888998
Q ss_pred HhcCCc
Q 003890 287 YLTNKK 292 (788)
Q Consensus 287 ~l~~kr 292 (788)
.++|++
T Consensus 80 L~~g~~ 85 (218)
T COG0572 80 LKQGKP 85 (218)
T ss_pred HHcCCc
Confidence 888887
No 207
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.29 E-value=0.045 Score=58.71 Aligned_cols=113 Identities=12% Similarity=0.128 Sum_probs=58.5
Q ss_pred CcEEEEEEcCCCChHHHHHHHHHcccCcccccceeEEEEeCC-CCChHHHHHHHHHHcCCCCCCcccccCCHHHHHHHHH
Q 003890 207 GLSVVAILNGSGFDKTAFAADTYNNNHIKFYFDCLAWVRVSI-AYDSGKILDDIIKSVMPPSRVSVIIGEDYKLKKTILR 285 (788)
Q Consensus 207 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~-~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~l~ 285 (788)
+.++|+++|.+|+||||++..++.. ....=..+..++... .....+-++...+.++.+.. ...+...+...+.
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~--L~~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~----v~~d~~~L~~aL~ 313 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQ--FHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVI----AVRDEAAMTRALT 313 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHH--HHHcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEE----ecCCHHHHHHHHH
Confidence 3579999999999999999888763 222211244444322 11222223333333433321 2345566665554
Q ss_pred HHhcC-CcEEEEEeCCCC---ChhhHHHHhhhcCCCCCCcEEEE
Q 003890 286 DYLTN-KKYFIVLDDVFN---DSDIWDDLEQVLPDNQNGSRVLI 325 (788)
Q Consensus 286 ~~l~~-kr~LlVLDdvw~---~~~~~~~l~~~l~~~~~gskIiv 325 (788)
..-.. +.=++++|-.-. +......+...+....+...++|
T Consensus 314 ~lk~~~~~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLV 357 (436)
T PRK11889 314 YFKEEARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLT 357 (436)
T ss_pred HHHhccCCCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEE
Confidence 44322 234677787642 23345555555543333334454
No 208
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=96.24 E-value=0.033 Score=63.43 Aligned_cols=47 Identities=19% Similarity=0.265 Sum_probs=35.0
Q ss_pred CCcccchhcHHHHHHHHh---cC-------CCCcEEEEEEcCCCChHHHHHHHHHcc
Q 003890 185 LDISEFERGREELFDLLI---EG-------PSGLSVVAILNGSGFDKTAFAADTYNN 231 (788)
Q Consensus 185 ~~~vGr~~~~~~i~~~L~---~~-------~~~~~vi~I~G~gGiGKTtLa~~v~~~ 231 (788)
.+++|.+..++++.+.+. .. ....+-+-++|++|+|||+||+.+++.
T Consensus 55 ~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~ 111 (495)
T TIGR01241 55 KDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGE 111 (495)
T ss_pred HHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHH
Confidence 889998887776665443 21 122345779999999999999999984
No 209
>PF05659 RPW8: Arabidopsis broad-spectrum mildew resistance protein RPW8; InterPro: IPR008808 This entry represents the RPW8 domain found in several broad-spectrum mildew resistance proteins from Arabidopsis thaliana and other dicots. Plant disease resistance (R) genes control the recognition of specific pathogens and activate subsequent defence responses. The R protein-mediated defences typically involve a rapid, localized necrosis, or hypersensitive response (HR), at the site of infection, and the localised formation of antimicrobial chemicals and proteins that restrict growth of the pathogen. The A. thaliana locus Resistance to Powdery Mildew 8 (RPW8) contains two naturally polymorphic, dominant R genes: RPW8.1 and RPW8.2, which individually control resistance to a broad range of powdery mildew pathogens. They induce localised, salicylic acid-dependent defences similar to those induced by R genes that control specific resistance. Apparently, broad-spectrum resistance mediated by RPW8 uses the same mechanisms as specific resistance [, ]. RPW8.1 and RPW8.2 share similarity with an ~150 amino acid module forming the N terminus of a group of disease resistance proteins, which have a nucleotide-binding site (NBS) and leucine-rich repeats (LRRs) [, ]. The RPW8 domain sequences contain a predicted N-terminal transmembrane (TM) region or possibly a signal peptide, and a coiled-coil (CC) motif [].
Probab=96.24 E-value=0.019 Score=53.08 Aligned_cols=109 Identities=13% Similarity=0.201 Sum_probs=74.9
Q ss_pred ceEEeecccchHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchhc--cCCcccccCChHHH
Q 003890 23 ALTLSDSTNVTPLFQNLLTESEIIATTLLRNYEADVARLLFQLIRQKFDEFEVALPFLQLLDLE--ESDEDVKRGDILEI 100 (788)
Q Consensus 23 a~~~sa~~~~~~ll~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~~~L~~i~~~l~~a~~~--~~~~~~~~~~~~~W 100 (788)
.++++|+.|+ +++.|+. .++..-+ ....++.-+++|..++++|.+++++.+.. ..+..-+ .-
T Consensus 4 eL~~gaalG~--~~~eLlk-------~v~~~~~--k~~~fk~~l~~L~sTl~~i~P~i~eI~~~~~eld~~~~-----ee 67 (147)
T PF05659_consen 4 ELVGGAALGA--VFGELLK-------AVIDASK--KSLSFKSILKRLESTLESIIPIIKEIDKLNVELDRPRQ-----EE 67 (147)
T ss_pred HHHHHHHHHH--HHHHHHH-------HHHHHHH--HHHhhhhHHHHHHHHHHHhhhHHHHHHHHhhhcCCchh-----HH
Confidence 3445556666 6666632 2222212 35567888999999999999999999987 4555547 88
Q ss_pred HHHHHHHHHhHHHHHHHHHHhhhcccCCCcccccchhhhhHHHHHHHHHHHHHHHhccC
Q 003890 101 LEDINHFVHESEEAIDAFFINIMQQQSRENESESSTKMALLVGLHSKIIDIRNRMQQLP 159 (788)
Q Consensus 101 l~~l~~~~y~~ed~lD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~l~~i~ 159 (788)
++++.+...++++++++|..-. ..++...++.+++|+++.+.+....
T Consensus 68 ~e~L~~~L~~g~~LV~k~sk~~------------r~n~~kk~~y~~Ki~~le~~l~~f~ 114 (147)
T PF05659_consen 68 IERLKELLEKGKELVEKCSKVR------------RWNLYKKPRYARKIEELEESLRRFI 114 (147)
T ss_pred HHHHHHHHHHHHHHHHHhcccc------------HHHHHhhHhHHHHHHHHHHHHHHHh
Confidence 9999999999999999985211 1223344566777777777776653
No 210
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=96.24 E-value=0.01 Score=66.04 Aligned_cols=100 Identities=11% Similarity=0.212 Sum_probs=54.2
Q ss_pred cEEEEEEcCCCChHHHHHHHHHcccCcccccceeEEEEeCCCCChHHHHHHHHHHcCCCCCCcccccCCHHHHHHHHHHH
Q 003890 208 LSVVAILNGSGFDKTAFAADTYNNNHIKFYFDCLAWVRVSIAYDSGKILDDIIKSVMPPSRVSVIIGEDYKLKKTILRDY 287 (788)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~~ 287 (788)
...+.|+|..|+|||+|++.+++ ++...-..+++++ ...+...+...+.... ....++.
T Consensus 141 ~npl~L~G~~G~GKTHLl~Ai~~--~l~~~~~~v~yi~------~~~f~~~~~~~l~~~~-------------~~~f~~~ 199 (445)
T PRK12422 141 FNPIYLFGPEGSGKTHLMQAAVH--ALRESGGKILYVR------SELFTEHLVSAIRSGE-------------MQRFRQF 199 (445)
T ss_pred CceEEEEcCCCCCHHHHHHHHHH--HHHHcCCCEEEee------HHHHHHHHHHHHhcch-------------HHHHHHH
Confidence 45688999999999999999998 3433223355553 3344445555543211 1223333
Q ss_pred hcCCcEEEEEeCCCC-Chh--hHHHHhhhcCC-CCCCcEEEEecCC
Q 003890 288 LTNKKYFIVLDDVFN-DSD--IWDDLEQVLPD-NQNGSRVLITVTD 329 (788)
Q Consensus 288 l~~kr~LlVLDdvw~-~~~--~~~~l~~~l~~-~~~gskIivTTR~ 329 (788)
++ ..-+|++||+.. ... .-+.+...+.. ...|..||+||..
T Consensus 200 ~~-~~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~ 244 (445)
T PRK12422 200 YR-NVDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTC 244 (445)
T ss_pred cc-cCCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCC
Confidence 33 334788899851 111 11223222221 1135568888754
No 211
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=96.23 E-value=0.012 Score=60.45 Aligned_cols=74 Identities=18% Similarity=0.168 Sum_probs=45.0
Q ss_pred CcEEEEEEcCCCChHHHHHHHHHcccCcccccceeEEEEeCCCCChHHHHHHHHHHcCCCCCCcccccCCHHHHHHHHHH
Q 003890 207 GLSVVAILNGSGFDKTAFAADTYNNNHIKFYFDCLAWVRVSIAYDSGKILDDIIKSVMPPSRVSVIIGEDYKLKKTILRD 286 (788)
Q Consensus 207 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~ 286 (788)
+..-+.++|.+|+|||.||.++.+..- +..+. +.++ ...++..++........ ....|.+
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~-~~g~s-v~f~------~~~el~~~Lk~~~~~~~------------~~~~l~~ 163 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELL-KAGIS-VLFI------TAPDLLSKLKAAFDEGR------------LEEKLLR 163 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHH-HcCCe-EEEE------EHHHHHHHHHHHHhcCc------------hHHHHHH
Confidence 466788999999999999999999432 22232 5554 34455555555443311 1223333
Q ss_pred HhcCCcEEEEEeCCC
Q 003890 287 YLTNKKYFIVLDDVF 301 (788)
Q Consensus 287 ~l~~kr~LlVLDdvw 301 (788)
.++ +-=||||||+-
T Consensus 164 ~l~-~~dlLIiDDlG 177 (254)
T COG1484 164 ELK-KVDLLIIDDIG 177 (254)
T ss_pred Hhh-cCCEEEEeccc
Confidence 232 22389999996
No 212
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=96.23 E-value=0.02 Score=64.02 Aligned_cols=102 Identities=12% Similarity=0.210 Sum_probs=57.1
Q ss_pred cEEEEEEcCCCChHHHHHHHHHcccCcccccc--eeEEEEeCCCCChHHHHHHHHHHcCCCCCCcccccCCHHHHHHHHH
Q 003890 208 LSVVAILNGSGFDKTAFAADTYNNNHIKFYFD--CLAWVRVSIAYDSGKILDDIIKSVMPPSRVSVIIGEDYKLKKTILR 285 (788)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~--~~~wv~vs~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~l~ 285 (788)
...+.|+|..|+|||+|++.+.+ .+....+ .++++ +..++...+...+.... .....++
T Consensus 141 ~npl~i~G~~G~GKTHLl~Ai~~--~l~~~~~~~~v~yv------~~~~f~~~~~~~l~~~~-----------~~~~~~~ 201 (450)
T PRK14087 141 YNPLFIYGESGMGKTHLLKAAKN--YIESNFSDLKVSYM------SGDEFARKAVDILQKTH-----------KEIEQFK 201 (450)
T ss_pred cCceEEECCCCCcHHHHHHHHHH--HHHHhCCCCeEEEE------EHHHHHHHHHHHHHHhh-----------hHHHHHH
Confidence 45688999999999999999998 3333222 24444 33456666666654210 1122334
Q ss_pred HHhcCCcEEEEEeCCCC-C-hhhH-HHHhhhcCC-CCCCcEEEEecCC
Q 003890 286 DYLTNKKYFIVLDDVFN-D-SDIW-DDLEQVLPD-NQNGSRVLITVTD 329 (788)
Q Consensus 286 ~~l~~kr~LlVLDdvw~-~-~~~~-~~l~~~l~~-~~~gskIivTTR~ 329 (788)
+.++ ..-+||+||+.. . ...+ +.+...+.. ...|..||+|+..
T Consensus 202 ~~~~-~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~ 248 (450)
T PRK14087 202 NEIC-QNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDK 248 (450)
T ss_pred HHhc-cCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCC
Confidence 4443 344888999952 1 1222 334333331 1234568888664
No 213
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=96.23 E-value=0.012 Score=54.62 Aligned_cols=21 Identities=14% Similarity=0.237 Sum_probs=19.5
Q ss_pred EEEEEcCCCChHHHHHHHHHc
Q 003890 210 VVAILNGSGFDKTAFAADTYN 230 (788)
Q Consensus 210 vi~I~G~gGiGKTtLa~~v~~ 230 (788)
||.++|++|+||||+|+.+..
T Consensus 1 lii~~G~pgsGKSt~a~~l~~ 21 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAK 21 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 678999999999999999986
No 214
>PRK06696 uridine kinase; Validated
Probab=96.20 E-value=0.0059 Score=61.66 Aligned_cols=42 Identities=21% Similarity=0.116 Sum_probs=34.5
Q ss_pred cchhcHHHHHHHHhc-CCCCcEEEEEEcCCCChHHHHHHHHHc
Q 003890 189 EFERGREELFDLLIE-GPSGLSVVAILNGSGFDKTAFAADTYN 230 (788)
Q Consensus 189 Gr~~~~~~i~~~L~~-~~~~~~vi~I~G~gGiGKTtLa~~v~~ 230 (788)
.|.+-+++|.+.+.. ......+|+|.|.+|+||||||+.+.+
T Consensus 2 ~~~~~~~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA~~L~~ 44 (223)
T PRK06696 2 SRKQLIKELAEHILTLNLTRPLRVAIDGITASGKTTFADELAE 44 (223)
T ss_pred cHHHHHHHHHHHHHHhCCCCceEEEEECCCCCCHHHHHHHHHH
Confidence 356677788888765 334688999999999999999999998
No 215
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=96.20 E-value=0.012 Score=60.45 Aligned_cols=94 Identities=18% Similarity=0.167 Sum_probs=56.8
Q ss_pred CcEEEEEEcCCCChHHHHHHHHHcccCcccc---c-ceeEEEEeCCCCChHHHHHHHHHHcCCCCCC-----cccccCCH
Q 003890 207 GLSVVAILNGSGFDKTAFAADTYNNNHIKFY---F-DCLAWVRVSIAYDSGKILDDIIKSVMPPSRV-----SVIIGEDY 277 (788)
Q Consensus 207 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~---F-~~~~wv~vs~~~~~~~~~~~il~~l~~~~~~-----~~~~~~~~ 277 (788)
.-.+.=|+|.+|+|||.|+-+++-...+... - ..++|++-...|+..++. +|++........ ......+.
T Consensus 37 ~g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~-~i~~~~~~~~~~~l~~I~v~~~~~~ 115 (256)
T PF08423_consen 37 TGSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQ-QIAERFGLDPEEILDNIFVIRVFDL 115 (256)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHH-HHHHHTTS-HHHHHHTEEEEE-SSH
T ss_pred CCcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHH-HHhhccccccchhhhceeeeecCCH
Confidence 3568899999999999999888754333322 1 249999998889988876 466654332110 00122344
Q ss_pred HHHHHHH---HHHhc-CCcEEEEEeCCC
Q 003890 278 KLKKTIL---RDYLT-NKKYFIVLDDVF 301 (788)
Q Consensus 278 ~~~~~~l---~~~l~-~kr~LlVLDdvw 301 (788)
+++...+ ...+. .+=-|||+|.+-
T Consensus 116 ~~l~~~L~~l~~~l~~~~ikLIVIDSIa 143 (256)
T PF08423_consen 116 EELLELLEQLPKLLSESKIKLIVIDSIA 143 (256)
T ss_dssp HHHHHHHHHHHHHHHHSCEEEEEEETSS
T ss_pred HHHHHHHHHHHhhccccceEEEEecchH
Confidence 4444433 33332 344599999884
No 216
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=96.20 E-value=0.042 Score=53.23 Aligned_cols=122 Identities=11% Similarity=-0.007 Sum_probs=60.4
Q ss_pred cEEEEEEcCCCChHHHHHHHHHcccCcccccceeEEEEeCCCCChHHHHHHHHHHcCCCCCCcc----------cccCC-
Q 003890 208 LSVVAILNGSGFDKTAFAADTYNNNHIKFYFDCLAWVRVSIAYDSGKILDDIIKSVMPPSRVSV----------IIGED- 276 (788)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~~l~~~~~~~~----------~~~~~- 276 (788)
-.+++|+|..|.|||||++.+..-.. .-...+++.-. +........-..++....... ....+
T Consensus 28 Ge~~~i~G~nGsGKStLl~~l~G~~~---~~~G~i~~~g~---~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~i~~~LS~ 101 (178)
T cd03247 28 GEKIALLGRSGSGKSTLLQLLTGDLK---PQQGEITLDGV---PVSDLEKALSSLISVLNQRPYLFDTTLRNNLGRRFSG 101 (178)
T ss_pred CCEEEEECCCCCCHHHHHHHHhccCC---CCCCEEEECCE---EHHHHHHHHHhhEEEEccCCeeecccHHHhhcccCCH
Confidence 45899999999999999999987421 11222332110 111111111111110000000 01111
Q ss_pred HHHHHHHHHHHhcCCcEEEEEeCCCC--ChhhHHHHhhhcCCCCCCcEEEEecCChHHHhh
Q 003890 277 YKLKKTILRDYLTNKKYFIVLDDVFN--DSDIWDDLEQVLPDNQNGSRVLITVTDLDLLES 335 (788)
Q Consensus 277 ~~~~~~~l~~~l~~kr~LlVLDdvw~--~~~~~~~l~~~l~~~~~gskIivTTR~~~v~~~ 335 (788)
-+...-.+.+.+-.++=+++||+... +....+.+...+.....+..||++|.+......
T Consensus 102 G~~qrv~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~ 162 (178)
T cd03247 102 GERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGIEH 162 (178)
T ss_pred HHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHh
Confidence 12222345555666778899998862 223333333333322236678888888776653
No 217
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=96.17 E-value=0.014 Score=68.95 Aligned_cols=44 Identities=20% Similarity=0.114 Sum_probs=37.2
Q ss_pred CCcccchhcHHHHHHHHhcCCCCcEEEEEEcCCCChHHHHHHHHHc
Q 003890 185 LDISEFERGREELFDLLIEGPSGLSVVAILNGSGFDKTAFAADTYN 230 (788)
Q Consensus 185 ~~~vGr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 230 (788)
..++||+.+++++++.|.... ..-+-++|.+|+|||++|+.++.
T Consensus 186 ~~liGR~~ei~~~i~iL~r~~--~~n~LLvGppGvGKT~lae~la~ 229 (758)
T PRK11034 186 DPLIGREKELERAIQVLCRRR--KNNPLLVGESGVGKTAIAEGLAW 229 (758)
T ss_pred CcCcCCCHHHHHHHHHHhccC--CCCeEEECCCCCCHHHHHHHHHH
Confidence 569999999999999998753 23335799999999999999886
No 218
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=96.16 E-value=0.0054 Score=68.44 Aligned_cols=46 Identities=13% Similarity=0.140 Sum_probs=40.6
Q ss_pred CCcccchhcHHHHHHHHhc----CCCCcEEEEEEcCCCChHHHHHHHHHc
Q 003890 185 LDISEFERGREELFDLLIE----GPSGLSVVAILNGSGFDKTAFAADTYN 230 (788)
Q Consensus 185 ~~~vGr~~~~~~i~~~L~~----~~~~~~vi~I~G~gGiGKTtLa~~v~~ 230 (788)
.+++|.++.+++|++.|.. -+..-+++.++|++|+||||||+.+.+
T Consensus 76 ~d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~ 125 (644)
T PRK15455 76 EEFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKS 125 (644)
T ss_pred hcccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHH
Confidence 7899999999999999933 234568999999999999999999998
No 219
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=96.16 E-value=0.05 Score=52.87 Aligned_cols=122 Identities=14% Similarity=0.129 Sum_probs=65.6
Q ss_pred cEEEEEEcCCCChHHHHHHHHHcccCcccccceeEEEE---eCCCCChHHHHH------HHHHHcCCCCCC-ccccc-CC
Q 003890 208 LSVVAILNGSGFDKTAFAADTYNNNHIKFYFDCLAWVR---VSIAYDSGKILD------DIIKSVMPPSRV-SVIIG-ED 276 (788)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~---vs~~~~~~~~~~------~il~~l~~~~~~-~~~~~-~~ 276 (788)
-.+++|+|..|.|||||++.++.. .......+++. +.. .+...... ++++.++..... ..... ..
T Consensus 25 G~~~~l~G~nGsGKStLl~~i~G~---~~~~~G~v~~~g~~~~~-~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~LS~ 100 (180)
T cd03214 25 GEIVGILGPNGAGKSTLLKTLAGL---LKPSSGEILLDGKDLAS-LSPKELARKIAYVPQALELLGLAHLADRPFNELSG 100 (180)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC---CCCCCcEEEECCEECCc-CCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccCCH
Confidence 468999999999999999999973 22233334332 221 12222211 134444432110 00111 12
Q ss_pred HHHHHHHHHHHhcCCcEEEEEeCCCC--ChhhHHHHhhhcCCC-CC-CcEEEEecCChHHH
Q 003890 277 YKLKKTILRDYLTNKKYFIVLDDVFN--DSDIWDDLEQVLPDN-QN-GSRVLITVTDLDLL 333 (788)
Q Consensus 277 ~~~~~~~l~~~l~~kr~LlVLDdvw~--~~~~~~~l~~~l~~~-~~-gskIivTTR~~~v~ 333 (788)
-+...-.+.+.+...+-++++|+--. +....+.+...+... .. |..||++|.+....
T Consensus 101 G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~ 161 (180)
T cd03214 101 GERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLA 161 (180)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 22233345566667778899998852 333444444444322 12 66788888876654
No 220
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=96.15 E-value=0.056 Score=51.72 Aligned_cols=117 Identities=17% Similarity=0.089 Sum_probs=60.6
Q ss_pred cEEEEEEcCCCChHHHHHHHHHcccCc-ccc--cc---eeEEEEeCCCCCh--HHHHHHHHHHcCCCCCCcccccCCHHH
Q 003890 208 LSVVAILNGSGFDKTAFAADTYNNNHI-KFY--FD---CLAWVRVSIAYDS--GKILDDIIKSVMPPSRVSVIIGEDYKL 279 (788)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~~~~~-~~~--F~---~~~wv~vs~~~~~--~~~~~~il~~l~~~~~~~~~~~~~~~~ 279 (788)
-.+++|+|..|.|||||++.+..-... .+. |+ .+. .+.+.+.. ..+...+... ... .-..-+.
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~i~--~~~q~~~~~~~tv~~nl~~~---~~~----~LS~G~~ 97 (166)
T cd03223 27 GDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLL--FLPQRPYLPLGTLREQLIYP---WDD----VLSGGEQ 97 (166)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCCceEE--EECCCCccccccHHHHhhcc---CCC----CCCHHHH
Confidence 458999999999999999999974221 111 11 122 23333221 1233332210 111 1122233
Q ss_pred HHHHHHHHhcCCcEEEEEeCCCC--ChhhHHHHhhhcCCCCCCcEEEEecCChHHHhh
Q 003890 280 KKTILRDYLTNKKYFIVLDDVFN--DSDIWDDLEQVLPDNQNGSRVLITVTDLDLLES 335 (788)
Q Consensus 280 ~~~~l~~~l~~kr~LlVLDdvw~--~~~~~~~l~~~l~~~~~gskIivTTR~~~v~~~ 335 (788)
..-.+.+.+..++=++++|+--. +......+...+... +..||++|.+......
T Consensus 98 ~rv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsh~~~~~~~ 153 (166)
T cd03223 98 QRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKEL--GITVISVGHRPSLWKF 153 (166)
T ss_pred HHHHHHHHHHcCCCEEEEECCccccCHHHHHHHHHHHHHh--CCEEEEEeCChhHHhh
Confidence 33345555556677888997752 233333333333322 3568888887766543
No 221
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=96.14 E-value=0.033 Score=57.66 Aligned_cols=55 Identities=15% Similarity=0.131 Sum_probs=34.4
Q ss_pred hcHHHHHHHHhcCCCCcEEEEEEcCCCChHHHHHHHHHcccCcccccceeEEEEeCCCCChHHH
Q 003890 192 RGREELFDLLIEGPSGLSVVAILNGSGFDKTAFAADTYNNNHIKFYFDCLAWVRVSIAYDSGKI 255 (788)
Q Consensus 192 ~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~ 255 (788)
.-++++..++..+ .-|-+.|.+|+|||+||+.+.. ..... ...++++...+..++
T Consensus 9 ~l~~~~l~~l~~g----~~vLL~G~~GtGKT~lA~~la~--~lg~~---~~~i~~~~~~~~~dl 63 (262)
T TIGR02640 9 RVTSRALRYLKSG----YPVHLRGPAGTGKTTLAMHVAR--KRDRP---VMLINGDAELTTSDL 63 (262)
T ss_pred HHHHHHHHHHhcC----CeEEEEcCCCCCHHHHHHHHHH--HhCCC---EEEEeCCccCCHHHH
Confidence 3345555555443 2455899999999999999987 33222 345555555544443
No 222
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=96.14 E-value=0.015 Score=57.55 Aligned_cols=112 Identities=13% Similarity=0.092 Sum_probs=63.2
Q ss_pred EEEEEEcCCCChHHHHHHHHHcccCcccccceeEEEEeCC-CCChHHHHHHHHHHcCCCCCCcccccCCHHHHHHHHHHH
Q 003890 209 SVVAILNGSGFDKTAFAADTYNNNHIKFYFDCLAWVRVSI-AYDSGKILDDIIKSVMPPSRVSVIIGEDYKLKKTILRDY 287 (788)
Q Consensus 209 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~-~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~~ 287 (788)
.+|.|+|..|+||||++..+.. .+.......+++-... .+.... ...+..+ .. ...+.....+.++..
T Consensus 2 GlilI~GptGSGKTTll~~ll~--~~~~~~~~~i~t~e~~~E~~~~~-~~~~i~q----~~----vg~~~~~~~~~i~~a 70 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMID--YINKNKTHHILTIEDPIEFVHES-KRSLINQ----RE----VGLDTLSFENALKAA 70 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHH--HhhhcCCcEEEEEcCCccccccC-ccceeee----cc----cCCCccCHHHHHHHH
Confidence 4789999999999999998776 3333333344432211 111000 0001100 00 111223455667777
Q ss_pred hcCCcEEEEEeCCCCChhhHHHHhhhcCCCCCCcEEEEecCChHHHhh
Q 003890 288 LTNKKYFIVLDDVFNDSDIWDDLEQVLPDNQNGSRVLITVTDLDLLES 335 (788)
Q Consensus 288 l~~kr~LlVLDdvw~~~~~~~~l~~~l~~~~~gskIivTTR~~~v~~~ 335 (788)
+....=.+++|++. +.+.+..+.... ..|-.|+.|+-..++...
T Consensus 71 Lr~~pd~ii~gEir-d~e~~~~~l~~a---~~G~~v~~t~Ha~~~~~~ 114 (198)
T cd01131 71 LRQDPDVILVGEMR-DLETIRLALTAA---ETGHLVMSTLHTNSAAKT 114 (198)
T ss_pred hcCCcCEEEEcCCC-CHHHHHHHHHHH---HcCCEEEEEecCCcHHHH
Confidence 87777799999998 666555444332 235568888877666543
No 223
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=96.14 E-value=0.044 Score=52.81 Aligned_cols=118 Identities=17% Similarity=0.186 Sum_probs=62.6
Q ss_pred cEEEEEEcCCCChHHHHHHHHHccc-Cc--ccc---cc--eeEEEEeCCCCChHHHHHHHHHHcCCCCC--CcccccCCH
Q 003890 208 LSVVAILNGSGFDKTAFAADTYNNN-HI--KFY---FD--CLAWVRVSIAYDSGKILDDIIKSVMPPSR--VSVIIGEDY 277 (788)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~~~-~~--~~~---F~--~~~wv~vs~~~~~~~~~~~il~~l~~~~~--~~~~~~~~~ 277 (788)
-.+++|+|..|+|||||.+.+..+. ++ ... |. .+.|+ .+ .+.+..++.... .......+.
T Consensus 21 G~~~~l~G~nG~GKSTLl~~il~~~G~v~~~~~~~~~~~~~~~~~--~q--------~~~l~~~~L~~~~~~~~~~~LSg 90 (176)
T cd03238 21 NVLVVVTGVSGSGKSTLVNEGLYASGKARLISFLPKFSRNKLIFI--DQ--------LQFLIDVGLGYLTLGQKLSTLSG 90 (176)
T ss_pred CCEEEEECCCCCCHHHHHHHHhhcCCcEEECCcccccccccEEEE--hH--------HHHHHHcCCCccccCCCcCcCCH
Confidence 4689999999999999999886321 11 111 11 12232 22 355666654321 111112221
Q ss_pred -HHHHHHHHHHhcCC--cEEEEEeCCCC--ChhhHHHHhhhcCCC-CCCcEEEEecCChHHHhh
Q 003890 278 -KLKKTILRDYLTNK--KYFIVLDDVFN--DSDIWDDLEQVLPDN-QNGSRVLITVTDLDLLES 335 (788)
Q Consensus 278 -~~~~~~l~~~l~~k--r~LlVLDdvw~--~~~~~~~l~~~l~~~-~~gskIivTTR~~~v~~~ 335 (788)
+...-.+.+.+-.+ .=++++|+--. +....+.+...+... ..|..||++|.+.+....
T Consensus 91 Gq~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~~~~~ 154 (176)
T cd03238 91 GELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNLDVLSS 154 (176)
T ss_pred HHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHh
Confidence 22222344455455 66888898752 333334444433321 246678888888776653
No 224
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=96.14 E-value=0.017 Score=58.74 Aligned_cols=132 Identities=15% Similarity=0.148 Sum_probs=80.6
Q ss_pred CCCCCCCcccchhcHHHHHHHHhcCCCCcEEEEEEcCCCChHHHHHHHHHcccCccccccee-EEEEeCCCCChHHHHHH
Q 003890 180 EGQPRLDISEFERGREELFDLLIEGPSGLSVVAILNGSGFDKTAFAADTYNNNHIKFYFDCL-AWVRVSIAYDSGKILDD 258 (788)
Q Consensus 180 ~~~~~~~~vGr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~-~wv~vs~~~~~~~~~~~ 258 (788)
.|..+.+++|-+..+.-+.+.+... .....-.+|++|.|||+-|..+...---.+.|+++ +=.++|..-... +.+.
T Consensus 31 rPkt~de~~gQe~vV~~L~~a~~~~--~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSderGis-vvr~ 107 (346)
T KOG0989|consen 31 RPKTFDELAGQEHVVQVLKNALLRR--ILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDERGIS-VVRE 107 (346)
T ss_pred CCCcHHhhcchHHHHHHHHHHHhhc--CCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhccccccccc-chhh
Confidence 3444488999999999999988873 47888899999999999988877632224567763 334555443222 1111
Q ss_pred HHHHcCCCCCCcccccCCHHHHHHHHHHHh--cCCcE-EEEEeCCCC-ChhhHHHHhhhcCCCCCCcEEEEecC
Q 003890 259 IIKSVMPPSRVSVIIGEDYKLKKTILRDYL--TNKKY-FIVLDDVFN-DSDIWDDLEQVLPDNQNGSRVLITVT 328 (788)
Q Consensus 259 il~~l~~~~~~~~~~~~~~~~~~~~l~~~l--~~kr~-LlVLDdvw~-~~~~~~~l~~~l~~~~~gskIivTTR 328 (788)
- ..+.+.+.....+.. ..++| .+|||++.. ..+.|..+..........++.|..+.
T Consensus 108 K--------------ik~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcn 167 (346)
T KOG0989|consen 108 K--------------IKNFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICN 167 (346)
T ss_pred h--------------hcCHHHHhhccccccCCCCCcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcC
Confidence 0 001111111110000 12343 678999953 46899999988887666777554444
No 225
>PRK07667 uridine kinase; Provisional
Probab=96.14 E-value=0.0075 Score=59.37 Aligned_cols=37 Identities=22% Similarity=0.229 Sum_probs=31.8
Q ss_pred HHHHHHHHhcCCCCcEEEEEEcCCCChHHHHHHHHHc
Q 003890 194 REELFDLLIEGPSGLSVVAILNGSGFDKTAFAADTYN 230 (788)
Q Consensus 194 ~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 230 (788)
.+.|.+.+........+|+|-|.+|+||||+|+.+..
T Consensus 3 ~~~~~~~~~~~~~~~~iIgI~G~~gsGKStla~~L~~ 39 (193)
T PRK07667 3 TNELINIMKKHKENRFILGIDGLSRSGKTTFVANLKE 39 (193)
T ss_pred HHHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 5677788876666678999999999999999999987
No 226
>CHL00176 ftsH cell division protein; Validated
Probab=96.14 E-value=0.023 Score=66.02 Aligned_cols=48 Identities=21% Similarity=0.194 Sum_probs=35.4
Q ss_pred CCCcccchhcHHHHHHHH---hcCC-------CCcEEEEEEcCCCChHHHHHHHHHcc
Q 003890 184 RLDISEFERGREELFDLL---IEGP-------SGLSVVAILNGSGFDKTAFAADTYNN 231 (788)
Q Consensus 184 ~~~~vGr~~~~~~i~~~L---~~~~-------~~~~vi~I~G~gGiGKTtLa~~v~~~ 231 (788)
+.++.|.++.++++.+.+ .... ...+-+-++|++|+|||+||+.++..
T Consensus 182 f~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e 239 (638)
T CHL00176 182 FRDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGE 239 (638)
T ss_pred HHhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 378999887776665544 3321 12456889999999999999999983
No 227
>PRK08939 primosomal protein DnaI; Reviewed
Probab=96.13 E-value=0.021 Score=60.32 Aligned_cols=119 Identities=14% Similarity=0.130 Sum_probs=65.2
Q ss_pred cchhcHHHHHHHHhcCC--CCcEEEEEEcCCCChHHHHHHHHHcccCcccccceeEEEEeCCCCChHHHHHHHHHHcCCC
Q 003890 189 EFERGREELFDLLIEGP--SGLSVVAILNGSGFDKTAFAADTYNNNHIKFYFDCLAWVRVSIAYDSGKILDDIIKSVMPP 266 (788)
Q Consensus 189 Gr~~~~~~i~~~L~~~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~~l~~~ 266 (788)
++....+...+++..-. ...+-+.++|..|+|||.||..+++... +..+. +.++++ ..++.++-......
T Consensus 135 ~~~~~~~~~~~fi~~~~~~~~~~gl~L~G~~G~GKThLa~Aia~~l~-~~g~~-v~~~~~------~~l~~~lk~~~~~~ 206 (306)
T PRK08939 135 DRLDALMAALDFLEAYPPGEKVKGLYLYGDFGVGKSYLLAAIANELA-KKGVS-STLLHF------PEFIRELKNSISDG 206 (306)
T ss_pred HHHHHHHHHHHHHHHhhccCCCCeEEEECCCCCCHHHHHHHHHHHHH-HcCCC-EEEEEH------HHHHHHHHHHHhcC
Confidence 44445555566665321 1346788999999999999999999432 22232 555544 34555554443211
Q ss_pred CCCcccccCCHHHHHHHHHHHhcCCcEEEEEeCCCC-ChhhHHH--Hhhhc-CCC-CCCcEEEEecCC
Q 003890 267 SRVSVIIGEDYKLKKTILRDYLTNKKYFIVLDDVFN-DSDIWDD--LEQVL-PDN-QNGSRVLITVTD 329 (788)
Q Consensus 267 ~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVLDdvw~-~~~~~~~--l~~~l-~~~-~~gskIivTTR~ 329 (788)
+.. ..+. .++ +-=||||||+.. ....|.. +...+ ... ..+-.+|+||--
T Consensus 207 ---------~~~---~~l~-~l~-~~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSNl 260 (306)
T PRK08939 207 ---------SVK---EKID-AVK-EAPVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSNF 260 (306)
T ss_pred ---------cHH---HHHH-Hhc-CCCEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEEEECCC
Confidence 111 2222 232 455899999962 2345643 43333 221 234457777764
No 228
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=96.11 E-value=0.011 Score=71.57 Aligned_cols=45 Identities=11% Similarity=0.087 Sum_probs=37.7
Q ss_pred CCcccchhcHHHHHHHHhcCCCCcEEEEEEcCCCChHHHHHHHHHcc
Q 003890 185 LDISEFERGREELFDLLIEGPSGLSVVAILNGSGFDKTAFAADTYNN 231 (788)
Q Consensus 185 ~~~vGr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 231 (788)
..++||+.++.++++.|.... ..-+.++|.+|+|||++|+.+...
T Consensus 173 ~~~igr~~ei~~~~~~l~r~~--~~n~lL~G~pGvGKT~l~~~la~~ 217 (852)
T TIGR03346 173 DPVIGRDEEIRRTIQVLSRRT--KNNPVLIGEPGVGKTAIVEGLAQR 217 (852)
T ss_pred CcCCCcHHHHHHHHHHHhcCC--CCceEEEcCCCCCHHHHHHHHHHH
Confidence 669999999999999997754 333447999999999999998873
No 229
>PRK04296 thymidine kinase; Provisional
Probab=96.10 E-value=0.01 Score=58.18 Aligned_cols=113 Identities=12% Similarity=-0.001 Sum_probs=62.2
Q ss_pred EEEEEEcCCCChHHHHHHHHHcccCcccccceeEEEEeCCCCChHHHHHHHHHHcCCCCCCcccccCCHHHHHHHHHHHh
Q 003890 209 SVVAILNGSGFDKTAFAADTYNNNHIKFYFDCLAWVRVSIAYDSGKILDDIIKSVMPPSRVSVIIGEDYKLKKTILRDYL 288 (788)
Q Consensus 209 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~~l 288 (788)
.++.|+|..|.||||+|..... +...+-..++.+. ..++.......+++.++..... ......+++...+++ .
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~--~~~~~g~~v~i~k--~~~d~~~~~~~i~~~lg~~~~~--~~~~~~~~~~~~~~~-~ 75 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAY--NYEERGMKVLVFK--PAIDDRYGEGKVVSRIGLSREA--IPVSSDTDIFELIEE-E 75 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHH--HHHHcCCeEEEEe--ccccccccCCcEecCCCCcccc--eEeCChHHHHHHHHh-h
Confidence 4677899999999999988877 3333323333331 1112222233455555432210 012334555555555 3
Q ss_pred cCCcEEEEEeCCCC-ChhhHHHHhhhcCCCCCCcEEEEecCCh
Q 003890 289 TNKKYFIVLDDVFN-DSDIWDDLEQVLPDNQNGSRVLITVTDL 330 (788)
Q Consensus 289 ~~kr~LlVLDdvw~-~~~~~~~l~~~l~~~~~gskIivTTR~~ 330 (788)
.++.-+||+|.+.. +.++...+...+ ...|..||+|.++.
T Consensus 76 ~~~~dvviIDEaq~l~~~~v~~l~~~l--~~~g~~vi~tgl~~ 116 (190)
T PRK04296 76 GEKIDCVLIDEAQFLDKEQVVQLAEVL--DDLGIPVICYGLDT 116 (190)
T ss_pred CCCCCEEEEEccccCCHHHHHHHHHHH--HHcCCeEEEEecCc
Confidence 34555899999952 233233333332 23477899998874
No 230
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=96.07 E-value=0.0052 Score=61.75 Aligned_cols=48 Identities=21% Similarity=0.201 Sum_probs=40.8
Q ss_pred CCCcccchhcHHHHHHHHhcC---CCCcEEEEEEcCCCChHHHHHHHHHcc
Q 003890 184 RLDISEFERGREELFDLLIEG---PSGLSVVAILNGSGFDKTAFAADTYNN 231 (788)
Q Consensus 184 ~~~~vGr~~~~~~i~~~L~~~---~~~~~vi~I~G~gGiGKTtLa~~v~~~ 231 (788)
+.++||-+.-++++.=++... ++.+.-+-++|++|.||||||.-+.+.
T Consensus 25 l~efiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~E 75 (332)
T COG2255 25 LDEFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIANE 75 (332)
T ss_pred HHHhcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHHH
Confidence 388999999999887777543 356888999999999999999999993
No 231
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=96.07 E-value=0.032 Score=54.99 Aligned_cols=83 Identities=17% Similarity=0.053 Sum_probs=46.8
Q ss_pred EEEEEcCCCChHHHHHHHHHcccCccc-ccc---eeEEEEeCCCCChHHHHHHHHHHcCCCCCCcccccCCHHHHHHHHH
Q 003890 210 VVAILNGSGFDKTAFAADTYNNNHIKF-YFD---CLAWVRVSIAYDSGKILDDIIKSVMPPSRVSVIIGEDYKLKKTILR 285 (788)
Q Consensus 210 vi~I~G~gGiGKTtLa~~v~~~~~~~~-~F~---~~~wv~vs~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~l~ 285 (788)
||+|.|.+|+||||+|+.+.. .... .+. ....+....-++....... -........-..+...+.+.+.+.|+
T Consensus 1 IIgI~G~sgSGKTTla~~L~~--~L~~~~~~~~~~~~~~~~d~~~~~~~~~~~-~~~~~~~~~~~~p~a~d~~~l~~~l~ 77 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQ--ILNKRGIPAMEMDIILSLDDFYDDYHLRDR-KGRGENRYNFDHPDAFDFDLLKEDLK 77 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHH--HHTTCTTTCCCSEEEEEGGGGBHHHHHHHH-HHHCTTTSSTTSGGGBSHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH--HhCccCcCccceeEEEeecccccccchhhH-hhccccccCCCCccccCHHHHHHHHH
Confidence 799999999999999999988 3332 222 1233332222222222221 12111111112346678888888888
Q ss_pred HHhcCCcEEE
Q 003890 286 DYLTNKKYFI 295 (788)
Q Consensus 286 ~~l~~kr~Ll 295 (788)
...+++.+-+
T Consensus 78 ~L~~g~~i~~ 87 (194)
T PF00485_consen 78 ALKNGGSIEI 87 (194)
T ss_dssp HHHTTSCEEE
T ss_pred HHhCCCcccc
Confidence 8777776544
No 232
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=95.99 E-value=0.021 Score=64.93 Aligned_cols=100 Identities=13% Similarity=0.213 Sum_probs=55.0
Q ss_pred cEEEEEEcCCCChHHHHHHHHHcccCcccccc--eeEEEEeCCCCChHHHHHHHHHHcCCCCCCcccccCCHHHHHHHHH
Q 003890 208 LSVVAILNGSGFDKTAFAADTYNNNHIKFYFD--CLAWVRVSIAYDSGKILDDIIKSVMPPSRVSVIIGEDYKLKKTILR 285 (788)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~--~~~wv~vs~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~l~ 285 (788)
...+.|+|..|+|||.|++.+++ .....+. .++|++ ..++..++...+... .. ..++
T Consensus 314 ~NpL~LyG~sGsGKTHLL~AIa~--~a~~~~~g~~V~Yit------aeef~~el~~al~~~---------~~----~~f~ 372 (617)
T PRK14086 314 YNPLFIYGESGLGKTHLLHAIGH--YARRLYPGTRVRYVS------SEEFTNEFINSIRDG---------KG----DSFR 372 (617)
T ss_pred CCcEEEECCCCCCHHHHHHHHHH--HHHHhCCCCeEEEee------HHHHHHHHHHHHHhc---------cH----HHHH
Confidence 34589999999999999999999 4443332 245553 344454554443221 11 2233
Q ss_pred HHhcCCcEEEEEeCCCC--ChhhHH-HHhhhcCC-CCCCcEEEEecCC
Q 003890 286 DYLTNKKYFIVLDDVFN--DSDIWD-DLEQVLPD-NQNGSRVLITVTD 329 (788)
Q Consensus 286 ~~l~~kr~LlVLDdvw~--~~~~~~-~l~~~l~~-~~~gskIivTTR~ 329 (788)
+.++. -=+|||||+.. ....|. .|...+.. ...|..|||||+.
T Consensus 373 ~~y~~-~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~ 419 (617)
T PRK14086 373 RRYRE-MDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDR 419 (617)
T ss_pred HHhhc-CCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCC
Confidence 33333 24788999962 112232 22222221 1235568888875
No 233
>PRK06620 hypothetical protein; Validated
Probab=95.98 E-value=0.014 Score=58.28 Aligned_cols=23 Identities=22% Similarity=-0.057 Sum_probs=20.9
Q ss_pred EEEEEEcCCCChHHHHHHHHHcc
Q 003890 209 SVVAILNGSGFDKTAFAADTYNN 231 (788)
Q Consensus 209 ~vi~I~G~gGiGKTtLa~~v~~~ 231 (788)
+.+-|+|++|+|||+|++.+++.
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~ 67 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNL 67 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhc
Confidence 67899999999999999998874
No 234
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=95.97 E-value=0.027 Score=58.95 Aligned_cols=87 Identities=18% Similarity=0.169 Sum_probs=47.2
Q ss_pred CcEEEEEEcCCCChHHHHHHHHHcccCcc-cccceeEEEEeCC-CCChHHHHHHHHHHcCCCCCCcccccCCHHHHHHHH
Q 003890 207 GLSVVAILNGSGFDKTAFAADTYNNNHIK-FYFDCLAWVRVSI-AYDSGKILDDIIKSVMPPSRVSVIIGEDYKLKKTIL 284 (788)
Q Consensus 207 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-~~F~~~~wv~vs~-~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~l 284 (788)
..++|+++|.+|+||||++..+......+ +.+ .+..|+... .....+.+....+.++.... ...+..++...+
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~-~V~li~~D~~r~~a~eql~~~~~~~~~p~~----~~~~~~~l~~~l 267 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGNK-KVALITTDTYRIGAVEQLKTYAKILGVPVK----VARDPKELRKAL 267 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCC-eEEEEECCccchhHHHHHHHHHHHhCCcee----ccCCHHHHHHHH
Confidence 35799999999999999998887632222 112 355555432 11223333333444443322 233445555555
Q ss_pred HHHhcCCcEEEEEeCC
Q 003890 285 RDYLTNKKYFIVLDDV 300 (788)
Q Consensus 285 ~~~l~~kr~LlVLDdv 300 (788)
... .+ .=+|++|..
T Consensus 268 ~~~-~~-~d~vliDt~ 281 (282)
T TIGR03499 268 DRL-RD-KDLILIDTA 281 (282)
T ss_pred HHc-cC-CCEEEEeCC
Confidence 443 33 347777753
No 235
>PRK08233 hypothetical protein; Provisional
Probab=95.94 E-value=0.026 Score=54.82 Aligned_cols=24 Identities=21% Similarity=0.223 Sum_probs=21.9
Q ss_pred cEEEEEEcCCCChHHHHHHHHHcc
Q 003890 208 LSVVAILNGSGFDKTAFAADTYNN 231 (788)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~~ 231 (788)
..+|+|.|.+|+||||||+.+...
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~ 26 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHK 26 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhh
Confidence 479999999999999999999873
No 236
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=95.93 E-value=0.037 Score=51.99 Aligned_cols=119 Identities=13% Similarity=0.086 Sum_probs=60.8
Q ss_pred EEEEEEcCCCChHHHHHHHHHcccCcccccceeEEEEe---CCCCChHHHHHHHHHHcCCCC--CCcccccCCH------
Q 003890 209 SVVAILNGSGFDKTAFAADTYNNNHIKFYFDCLAWVRV---SIAYDSGKILDDIIKSVMPPS--RVSVIIGEDY------ 277 (788)
Q Consensus 209 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v---s~~~~~~~~~~~il~~l~~~~--~~~~~~~~~~------ 277 (788)
..|-|++..|.||||+|....- +..++=..+.++-. ...+....+++.+ ..+.... ....+...+.
T Consensus 3 G~i~vy~g~G~Gkt~~a~g~~~--ra~~~g~~v~~vQFlKg~~~~gE~~~l~~l-~~v~~~~~g~~~~~~~~~~~~~~~~ 79 (159)
T cd00561 3 GLIQVYTGNGKGKTTAALGLAL--RALGHGYRVGVVQFLKGGWKYGELKALERL-PNIEIHRMGRGFFWTTENDEEDIAA 79 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHH--HHHHCCCeEEEEEEeCCCCccCHHHHHHhC-CCcEEEECCCCCccCCCChHHHHHH
Confidence 4678888899999999877665 22222112333322 2233333333333 0000000 0000000111
Q ss_pred -HHHHHHHHHHhcCC-cEEEEEeCCCC----ChhhHHHHhhhcCCCCCCcEEEEecCCh
Q 003890 278 -KLKKTILRDYLTNK-KYFIVLDDVFN----DSDIWDDLEQVLPDNQNGSRVLITVTDL 330 (788)
Q Consensus 278 -~~~~~~l~~~l~~k-r~LlVLDdvw~----~~~~~~~l~~~l~~~~~gskIivTTR~~ 330 (788)
....+..++.+... -=|+|||++-. .-.+.+.+...+.....+.-||+|.|+.
T Consensus 80 a~~~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~ 138 (159)
T cd00561 80 AAEGWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNA 138 (159)
T ss_pred HHHHHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCC
Confidence 12223344445444 44999999841 2234456666666666677899999984
No 237
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=95.91 E-value=0.064 Score=49.94 Aligned_cols=105 Identities=13% Similarity=0.102 Sum_probs=57.7
Q ss_pred cEEEEEEcCCCChHHHHHHHHHcccCcccccceeEEEEeCCCCChHHHHHHHHHHcCCCCCCcccccCCHHHHHHHHHHH
Q 003890 208 LSVVAILNGSGFDKTAFAADTYNNNHIKFYFDCLAWVRVSIAYDSGKILDDIIKSVMPPSRVSVIIGEDYKLKKTILRDY 287 (788)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~~ 287 (788)
-.+++|+|..|.|||||++.+.... ......+|+.-.. .+.... +-..-+...-.+.+.
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~~---~~~~G~i~~~~~~-------------~i~~~~-----~lS~G~~~rv~lara 84 (144)
T cd03221 26 GDRIGLVGRNGAGKSTLLKLIAGEL---EPDEGIVTWGSTV-------------KIGYFE-----QLSGGEKMRLALAKL 84 (144)
T ss_pred CCEEEEECCCCCCHHHHHHHHcCCC---CCCceEEEECCeE-------------EEEEEc-----cCCHHHHHHHHHHHH
Confidence 4689999999999999999998742 2223344432100 000000 001112222334555
Q ss_pred hcCCcEEEEEeCCCC--ChhhHHHHhhhcCCCCCCcEEEEecCChHHHhh
Q 003890 288 LTNKKYFIVLDDVFN--DSDIWDDLEQVLPDNQNGSRVLITVTDLDLLES 335 (788)
Q Consensus 288 l~~kr~LlVLDdvw~--~~~~~~~l~~~l~~~~~gskIivTTR~~~v~~~ 335 (788)
+..+.-++++|+--. +......+...+... +..||++|.+...+..
T Consensus 85 l~~~p~illlDEP~~~LD~~~~~~l~~~l~~~--~~til~~th~~~~~~~ 132 (144)
T cd03221 85 LLENPNLLLLDEPTNHLDLESIEALEEALKEY--PGTVILVSHDRYFLDQ 132 (144)
T ss_pred HhcCCCEEEEeCCccCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHHHH
Confidence 666777889998752 334444444444332 2468888877665543
No 238
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.91 E-value=0.048 Score=52.46 Aligned_cols=121 Identities=13% Similarity=0.084 Sum_probs=60.7
Q ss_pred cEEEEEEcCCCChHHHHHHHHHcccCcccccceeEEEEeCC--CCChHHHHHHHHHHcCCCCCCcccccCC--------H
Q 003890 208 LSVVAILNGSGFDKTAFAADTYNNNHIKFYFDCLAWVRVSI--AYDSGKILDDIIKSVMPPSRVSVIIGED--------Y 277 (788)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~--~~~~~~~~~~il~~l~~~~~~~~~~~~~--------~ 277 (788)
-.+++|+|..|.|||||.+.++.-. ......+++.-.. ....... -..+............+ -
T Consensus 28 G~~~~l~G~nGsGKstLl~~i~G~~---~~~~G~i~~~g~~~~~~~~~~~----~~~i~~~~~~~~~~~~t~~e~lLS~G 100 (171)
T cd03228 28 GEKVAIVGPSGSGKSTLLKLLLRLY---DPTSGEILIDGVDLRDLDLESL----RKNIAYVPQDPFLFSGTIRENILSGG 100 (171)
T ss_pred CCEEEEECCCCCCHHHHHHHHHcCC---CCCCCEEEECCEEhhhcCHHHH----HhhEEEEcCCchhccchHHHHhhCHH
Confidence 4689999999999999999999832 2223333332110 0111111 11111100000000001 1
Q ss_pred HHHHHHHHHHhcCCcEEEEEeCCCC--ChhhHHHHhhhcCCCCCCcEEEEecCChHHHhh
Q 003890 278 KLKKTILRDYLTNKKYFIVLDDVFN--DSDIWDDLEQVLPDNQNGSRVLITVTDLDLLES 335 (788)
Q Consensus 278 ~~~~~~l~~~l~~kr~LlVLDdvw~--~~~~~~~l~~~l~~~~~gskIivTTR~~~v~~~ 335 (788)
+...-.+.+.+..+.=+++||+-.. +....+.+...+.....+..||++|.+......
T Consensus 101 ~~~rl~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~ 160 (171)
T cd03228 101 QRQRIAIARALLRDPPILILDEATSALDPETEALILEALRALAKGKTVIVIAHRLSTIRD 160 (171)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHh
Confidence 1122235555666777999998862 233333343333322235678888888766654
No 239
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=95.91 E-value=0.041 Score=55.81 Aligned_cols=25 Identities=20% Similarity=0.173 Sum_probs=23.2
Q ss_pred CCcEEEEEEcCCCChHHHHHHHHHc
Q 003890 206 SGLSVVAILNGSGFDKTAFAADTYN 230 (788)
Q Consensus 206 ~~~~vi~I~G~gGiGKTtLa~~v~~ 230 (788)
....+++|.|..|+|||||++.+..
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~ 55 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEA 55 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4688999999999999999999987
No 240
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=95.89 E-value=0.0052 Score=59.46 Aligned_cols=24 Identities=21% Similarity=0.170 Sum_probs=20.2
Q ss_pred cEEEEEEcCCCChHHHHHHHHHcc
Q 003890 208 LSVVAILNGSGFDKTAFAADTYNN 231 (788)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~~ 231 (788)
..-+.++|.+|+|||.||..+.+.
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~ 70 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANE 70 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHH
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHH
Confidence 456899999999999999999874
No 241
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=95.89 E-value=0.035 Score=52.98 Aligned_cols=116 Identities=13% Similarity=-0.021 Sum_probs=61.7
Q ss_pred cEEEEEEcCCCChHHHHHHHHHcccCcccccceeEEEEeCC--CCChHHHHHHHHHHcCCCCCCcccccCCHHHHHHHHH
Q 003890 208 LSVVAILNGSGFDKTAFAADTYNNNHIKFYFDCLAWVRVSI--AYDSGKILDDIIKSVMPPSRVSVIIGEDYKLKKTILR 285 (788)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~--~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~l~ 285 (788)
-.+++|+|..|.|||||.+.+... .......+++.-.. ..+..+..+ ..++... +-..-+...-.+.
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~i~G~---~~~~~G~v~~~g~~~~~~~~~~~~~---~~i~~~~-----qLS~G~~qrl~la 94 (163)
T cd03216 26 GEVHALLGENGAGKSTLMKILSGL---YKPDSGEILVDGKEVSFASPRDARR---AGIAMVY-----QLSVGERQMVEIA 94 (163)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC---CCCCCeEEEECCEECCcCCHHHHHh---cCeEEEE-----ecCHHHHHHHHHH
Confidence 458999999999999999999873 22334444442111 111111111 1111100 1112223333455
Q ss_pred HHhcCCcEEEEEeCCCC--ChhhHHHHhhhcCCC-CCCcEEEEecCChHHHh
Q 003890 286 DYLTNKKYFIVLDDVFN--DSDIWDDLEQVLPDN-QNGSRVLITVTDLDLLE 334 (788)
Q Consensus 286 ~~l~~kr~LlVLDdvw~--~~~~~~~l~~~l~~~-~~gskIivTTR~~~v~~ 334 (788)
+.+-.++-++++|+.-. +....+.+...+... ..|..||++|.+...+.
T Consensus 95 ral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~ 146 (163)
T cd03216 95 RALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVF 146 (163)
T ss_pred HHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence 56666778888998852 333344444444321 23667888888866443
No 242
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=95.89 E-value=0.02 Score=56.32 Aligned_cols=57 Identities=18% Similarity=0.167 Sum_probs=37.3
Q ss_pred cEEEEEEcCCCChHHHHHHHHHcccCcccccceeEEEEeC-CCCChHHHHHHHHHHcCCC
Q 003890 208 LSVVAILNGSGFDKTAFAADTYNNNHIKFYFDCLAWVRVS-IAYDSGKILDDIIKSVMPP 266 (788)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs-~~~~~~~~~~~il~~l~~~ 266 (788)
++||.+||+.|+||||.+..++.. .+..=..+..++.. ......+-++...+.++.+
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~--~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp 58 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAAR--LKLKGKKVALISADTYRIGAVEQLKTYAEILGVP 58 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHH--HHHTT--EEEEEESTSSTHHHHHHHHHHHHHTEE
T ss_pred CEEEEEECCCCCchHhHHHHHHHH--HhhccccceeecCCCCCccHHHHHHHHHHHhccc
Confidence 479999999999999987666652 33332236777653 2334556667777777654
No 243
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=95.88 E-value=0.039 Score=58.45 Aligned_cols=95 Identities=8% Similarity=0.096 Sum_probs=57.7
Q ss_pred CCcEEEEEEcCCCChHHHHHHHHHcccCcc----cccceeEEEEeCCCCChHHHHHHHHHHcCCCCCC--c---ccccCC
Q 003890 206 SGLSVVAILNGSGFDKTAFAADTYNNNHIK----FYFDCLAWVRVSIAYDSGKILDDIIKSVMPPSRV--S---VIIGED 276 (788)
Q Consensus 206 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~----~~F~~~~wv~vs~~~~~~~~~~~il~~l~~~~~~--~---~~~~~~ 276 (788)
..-+++-|+|.+|+|||+|+.+++-..... ..=..++||+....|+++++.+ +++.++..... + .....+
T Consensus 94 ~~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~~-~a~~~g~d~~~~l~~i~~~~~~~ 172 (313)
T TIGR02238 94 ESMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIRA-IAERFGVDPDAVLDNILYARAYT 172 (313)
T ss_pred cCCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHHH-HHHHcCCChHHhcCcEEEecCCC
Confidence 346788899999999999998866432222 1113589999988888888764 56665543210 0 011223
Q ss_pred HHHHHH---HHHHHhc-CCcEEEEEeCCC
Q 003890 277 YKLKKT---ILRDYLT-NKKYFIVLDDVF 301 (788)
Q Consensus 277 ~~~~~~---~l~~~l~-~kr~LlVLDdvw 301 (788)
.++..+ .+...+. ++--|||+|-+-
T Consensus 173 ~e~~~~~l~~l~~~i~~~~~~LvVIDSis 201 (313)
T TIGR02238 173 SEHQMELLDYLAAKFSEEPFRLLIVDSIM 201 (313)
T ss_pred HHHHHHHHHHHHHHhhccCCCEEEEEcch
Confidence 444333 3333343 344589999884
No 244
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=95.82 E-value=0.0099 Score=54.98 Aligned_cols=44 Identities=18% Similarity=0.009 Sum_probs=31.2
Q ss_pred ccchhcHHHHHHHHhcCCCCcEEEEEEcCCCChHHHHHHHHHcc
Q 003890 188 SEFERGREELFDLLIEGPSGLSVVAILNGSGFDKTAFAADTYNN 231 (788)
Q Consensus 188 vGr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 231 (788)
||.-..++++.+.+..-......|-|.|..|+||+++|+.++..
T Consensus 1 vG~S~~~~~l~~~l~~~a~~~~pvli~GE~GtGK~~~A~~lh~~ 44 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLAKSSSPVLITGEPGTGKSLLARALHRY 44 (138)
T ss_dssp --SCHHHHHHHHHHHHHHCSSS-EEEECCTTSSHHHHHHCCHHT
T ss_pred CCCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCCHHHHHHHHHhh
Confidence 46666677777776543223456789999999999999999984
No 245
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=95.81 E-value=0.058 Score=57.62 Aligned_cols=58 Identities=10% Similarity=0.071 Sum_probs=41.2
Q ss_pred CCcEEEEEEcCCCChHHHHHHHHHcccCccccc----ceeEEEEeCCCCChHHHHHHHHHHcC
Q 003890 206 SGLSVVAILNGSGFDKTAFAADTYNNNHIKFYF----DCLAWVRVSIAYDSGKILDDIIKSVM 264 (788)
Q Consensus 206 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F----~~~~wv~vs~~~~~~~~~~~il~~l~ 264 (788)
..-.++-|+|.+|+|||+++.+++-.......+ ..++||+....+++.++.+ +++.++
T Consensus 100 ~~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~rl~~-~~~~~g 161 (317)
T PRK04301 100 ETQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIEQ-MAEALG 161 (317)
T ss_pred cCCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHHHHH-HHHHcC
Confidence 346788899999999999998887642222111 3699999988888877654 444443
No 246
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=95.76 E-value=0.046 Score=58.38 Aligned_cols=95 Identities=11% Similarity=0.096 Sum_probs=57.8
Q ss_pred CCcEEEEEEcCCCChHHHHHHHHHcccCcc----cccceeEEEEeCCCCChHHHHHHHHHHcCCCCCC-----cccccCC
Q 003890 206 SGLSVVAILNGSGFDKTAFAADTYNNNHIK----FYFDCLAWVRVSIAYDSGKILDDIIKSVMPPSRV-----SVIIGED 276 (788)
Q Consensus 206 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~----~~F~~~~wv~vs~~~~~~~~~~~il~~l~~~~~~-----~~~~~~~ 276 (788)
..-.++-|+|.+|+|||+|+.+++-..... +.-..++|++....|+++++.+ +++.++..... ......+
T Consensus 124 ~~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~-ia~~~g~d~~~~l~~I~~~~~~~ 202 (344)
T PLN03187 124 ETRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVP-IAERFGMDADAVLDNIIYARAYT 202 (344)
T ss_pred CCCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHH-HHHHcCCChhhhcCeEEEecCCC
Confidence 345788899999999999998876432321 1223589999999999888764 56665543211 0012334
Q ss_pred HHHHHHHHH---HHhc-CCcEEEEEeCCC
Q 003890 277 YKLKKTILR---DYLT-NKKYFIVLDDVF 301 (788)
Q Consensus 277 ~~~~~~~l~---~~l~-~kr~LlVLDdvw 301 (788)
.++....+. ..+. ++--|||+|-+-
T Consensus 203 ~e~~~~~l~~l~~~i~~~~~~LvVIDSit 231 (344)
T PLN03187 203 YEHQYNLLLGLAAKMAEEPFRLLIVDSVI 231 (344)
T ss_pred HHHHHHHHHHHHHHHHhcCCCEEEEeCcH
Confidence 444333322 2332 334478888874
No 247
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=95.76 E-value=0.036 Score=61.41 Aligned_cols=94 Identities=19% Similarity=0.256 Sum_probs=64.3
Q ss_pred CCCcccchhcHHHHHHHHhcC---C-------CCcEEEEEEcCCCChHHHHHHHHHcccCcccccceeEEEEeCCCCChH
Q 003890 184 RLDISEFERGREELFDLLIEG---P-------SGLSVVAILNGSGFDKTAFAADTYNNNHIKFYFDCLAWVRVSIAYDSG 253 (788)
Q Consensus 184 ~~~~vGr~~~~~~i~~~L~~~---~-------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~ 253 (788)
+.++=|.+..+.++.+++..- + ...+=|-++|++|+|||.||+++.+ +..-.| +.++-.
T Consensus 189 f~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAg--el~vPf-----~~isAp---- 257 (802)
T KOG0733|consen 189 FSDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAG--ELGVPF-----LSISAP---- 257 (802)
T ss_pred hhhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhh--hcCCce-----Eeecch----
Confidence 478889999999988887541 1 2356677999999999999999999 444333 333332
Q ss_pred HHHHHHHHHcCCCCCCcccccCCHHHHHHHHHHHhcCCcEEEEEeCCC
Q 003890 254 KILDDIIKSVMPPSRVSVIIGEDYKLKKTILRDYLTNKKYFIVLDDVF 301 (788)
Q Consensus 254 ~~~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVLDdvw 301 (788)
+|++.+.+. +++.+.+...+.-..-.+++.+|++.
T Consensus 258 ----eivSGvSGE---------SEkkiRelF~~A~~~aPcivFiDeID 292 (802)
T KOG0733|consen 258 ----EIVSGVSGE---------SEKKIRELFDQAKSNAPCIVFIDEID 292 (802)
T ss_pred ----hhhcccCcc---------cHHHHHHHHHHHhccCCeEEEeeccc
Confidence 455554443 33444444444555689999999995
No 248
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=95.74 E-value=0.029 Score=67.22 Aligned_cols=46 Identities=20% Similarity=0.190 Sum_probs=37.4
Q ss_pred CCcccchhcHHHHHHHHhcC-----------CCCcEEEEEEcCCCChHHHHHHHHHc
Q 003890 185 LDISEFERGREELFDLLIEG-----------PSGLSVVAILNGSGFDKTAFAADTYN 230 (788)
Q Consensus 185 ~~~vGr~~~~~~i~~~L~~~-----------~~~~~vi~I~G~gGiGKTtLa~~v~~ 230 (788)
.++.|.+..+++|.+++... -...+-+.++|.+|+||||||+.+++
T Consensus 178 ~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~ 234 (733)
T TIGR01243 178 EDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVAN 234 (733)
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHH
Confidence 77999999999998877421 02245678999999999999999998
No 249
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=95.73 E-value=0.05 Score=55.03 Aligned_cols=126 Identities=12% Similarity=0.055 Sum_probs=72.3
Q ss_pred cEEEEEEcCCCChHHHHHHHHHcccCcccccceeEEEEeCC-----CCChHHHHHHHHHHcCCCCCC--cccccCCHHHH
Q 003890 208 LSVVAILNGSGFDKTAFAADTYNNNHIKFYFDCLAWVRVSI-----AYDSGKILDDIIKSVMPPSRV--SVIIGEDYKLK 280 (788)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~-----~~~~~~~~~~il~~l~~~~~~--~~~~~~~~~~~ 280 (788)
-.++++||..|+||||+++.+.. ..+.-...++..-.+ .....+-..+++...+..... ..+..-+-.+.
T Consensus 39 ge~~glVGESG~GKSTlgr~i~~---L~~pt~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQr 115 (268)
T COG4608 39 GETLGLVGESGCGKSTLGRLILG---LEEPTSGEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGGQR 115 (268)
T ss_pred CCEEEEEecCCCCHHHHHHHHHc---CcCCCCceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhh
Confidence 56899999999999999999997 333222333332111 122334455667766643311 11122222333
Q ss_pred HH-HHHHHhcCCcEEEEEeCCCCCh------hhHHHHhhhcCCCCCCcEEEEecCChHHHhhccc
Q 003890 281 KT-ILRDYLTNKKYFIVLDDVFNDS------DIWDDLEQVLPDNQNGSRVLITVTDLDLLESLEM 338 (788)
Q Consensus 281 ~~-~l~~~l~~kr~LlVLDdvw~~~------~~~~~l~~~l~~~~~gskIivTTR~~~v~~~~~~ 338 (788)
+. .|.+.|.-+.-|+|.|.-- +. .+.-.+...+. ...|-..+..|-+-.|+..+..
T Consensus 116 QRi~IARALal~P~liV~DEpv-SaLDvSiqaqIlnLL~dlq-~~~~lt~lFIsHDL~vv~~isd 178 (268)
T COG4608 116 QRIGIARALALNPKLIVADEPV-SALDVSVQAQILNLLKDLQ-EELGLTYLFISHDLSVVRYISD 178 (268)
T ss_pred hhHHHHHHHhhCCcEEEecCch-hhcchhHHHHHHHHHHHHH-HHhCCeEEEEEEEHHhhhhhcc
Confidence 32 4677788899999999763 21 11112222222 2236668888888888877654
No 250
>PTZ00301 uridine kinase; Provisional
Probab=95.70 E-value=0.017 Score=57.28 Aligned_cols=23 Identities=22% Similarity=0.390 Sum_probs=21.3
Q ss_pred cEEEEEEcCCCChHHHHHHHHHc
Q 003890 208 LSVVAILNGSGFDKTAFAADTYN 230 (788)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~ 230 (788)
..+|||.|.+|+||||||+.+.+
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~ 25 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVS 25 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHH
Confidence 57999999999999999998887
No 251
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=95.69 E-value=0.015 Score=64.12 Aligned_cols=53 Identities=21% Similarity=0.140 Sum_probs=40.4
Q ss_pred CCCcccchhcHHHHHHHHhcC-----------CCCcEEEEEEcCCCChHHHHHHHHHcccCccccc
Q 003890 184 RLDISEFERGREELFDLLIEG-----------PSGLSVVAILNGSGFDKTAFAADTYNNNHIKFYF 238 (788)
Q Consensus 184 ~~~~vGr~~~~~~i~~~L~~~-----------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F 238 (788)
|.++.|.+..+++|.+.+... -...+-+.++|.+|+|||++|+.+++ +....|
T Consensus 182 ~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~--el~~~f 245 (438)
T PTZ00361 182 YADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVAN--ETSATF 245 (438)
T ss_pred HHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHH--hhCCCE
Confidence 378899999999988877421 02345677999999999999999999 444444
No 252
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=95.69 E-value=0.089 Score=56.44 Aligned_cols=137 Identities=8% Similarity=-0.005 Sum_probs=69.4
Q ss_pred CCccc-chhcHHHHHHHHhcCCCCcEEEEEEcCCCChHHHHHHHHHcccCcccccceeEEEEeCCCCChHHHHHHHHHHc
Q 003890 185 LDISE-FERGREELFDLLIEGPSGLSVVAILNGSGFDKTAFAADTYNNNHIKFYFDCLAWVRVSIAYDSGKILDDIIKSV 263 (788)
Q Consensus 185 ~~~vG-r~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~~l 263 (788)
..++| -+..++.+.+.+..+. -....-++|+.|+||||+|+.+.+..--....... .++.-...+.+...-
T Consensus 5 ~~i~~~q~~~~~~L~~~~~~~~-l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~-------~cg~C~~c~~~~~~~ 76 (329)
T PRK08058 5 EQLTALQPVVVKMLQNSIAKNR-LSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVE-------PCGTCTNCKRIDSGN 76 (329)
T ss_pred HHHHhhHHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCC-------CCCcCHHHHHHhcCC
Confidence 34667 5556677777765543 35677899999999999998876521000000000 000001111110000
Q ss_pred CCCCCC--cccccCCHHHHHHHHHHH----hcCCcEEEEEeCCCC-ChhhHHHHhhhcCCCCCCcEEEEecCC
Q 003890 264 MPPSRV--SVIIGEDYKLKKTILRDY----LTNKKYFIVLDDVFN-DSDIWDDLEQVLPDNQNGSRVLITVTD 329 (788)
Q Consensus 264 ~~~~~~--~~~~~~~~~~~~~~l~~~----l~~kr~LlVLDdvw~-~~~~~~~l~~~l~~~~~gskIivTTR~ 329 (788)
...... ........+++.+.+... ..+.+=++|+|++.. +....+.+...+.....++.+|++|.+
T Consensus 77 hpD~~~i~~~~~~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~~Il~t~~ 149 (329)
T PRK08058 77 HPDVHLVAPDGQSIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEEPSGGTTAILLTEN 149 (329)
T ss_pred CCCEEEeccccccCCHHHHHHHHHHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHhcCCCCCceEEEEeCC
Confidence 000000 000112233333332221 234555788999853 455677888888776677877777765
No 253
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=95.69 E-value=0.19 Score=51.99 Aligned_cols=134 Identities=16% Similarity=0.054 Sum_probs=71.4
Q ss_pred cHHHHHHHHhcCCCCcEEEEEEcCCCChHHHHHHHHHcccCcccccceeEEEEeCCCCChHHHHHHHHHHcCCCCCCcc-
Q 003890 193 GREELFDLLIEGPSGLSVVAILNGSGFDKTAFAADTYNNNHIKFYFDCLAWVRVSIAYDSGKILDDIIKSVMPPSRVSV- 271 (788)
Q Consensus 193 ~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~~l~~~~~~~~- 271 (788)
..+.++..|.... ...-++|+|..|.|||||.+.+... +. .....+++.- +.....+-..++......-.....
T Consensus 97 ~~~~~l~~l~~~~-~~~~~~i~g~~g~GKttl~~~l~~~--~~-~~~G~i~~~g-~~v~~~d~~~ei~~~~~~~~q~~~~ 171 (270)
T TIGR02858 97 AADKLLPYLVRNN-RVLNTLIISPPQCGKTTLLRDLARI--LS-TGISQLGLRG-KKVGIVDERSEIAGCVNGVPQHDVG 171 (270)
T ss_pred cHHHHHHHHHhCC-CeeEEEEEcCCCCCHHHHHHHHhCc--cC-CCCceEEECC-EEeecchhHHHHHHHhccccccccc
Confidence 4555666665432 3578999999999999999999983 32 2222333310 111000111233332221111000
Q ss_pred c--ccCCHHHHHHHHHHHhc-CCcEEEEEeCCCCChhhHHHHhhhcCCCCCCcEEEEecCChHHHhh
Q 003890 272 I--IGEDYKLKKTILRDYLT-NKKYFIVLDDVFNDSDIWDDLEQVLPDNQNGSRVLITVTDLDLLES 335 (788)
Q Consensus 272 ~--~~~~~~~~~~~l~~~l~-~kr~LlVLDdvw~~~~~~~~l~~~l~~~~~gskIivTTR~~~v~~~ 335 (788)
. +..+...-...+...+. ..+=++|+|.+- ..+.+..+...+. .|..||+||-+..+...
T Consensus 172 ~r~~v~~~~~k~~~~~~~i~~~~P~villDE~~-~~e~~~~l~~~~~---~G~~vI~ttH~~~~~~~ 234 (270)
T TIGR02858 172 IRTDVLDGCPKAEGMMMLIRSMSPDVIVVDEIG-REEDVEALLEALH---AGVSIIATAHGRDVEDL 234 (270)
T ss_pred ccccccccchHHHHHHHHHHhCCCCEEEEeCCC-cHHHHHHHHHHHh---CCCEEEEEechhHHHHH
Confidence 0 01111111222333332 478899999997 7766766666553 47789999998776544
No 254
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=95.68 E-value=0.048 Score=54.79 Aligned_cols=44 Identities=14% Similarity=-0.004 Sum_probs=31.7
Q ss_pred CCcEEEEEEcCCCChHHHHHHHHHcccCcccccceeEEEEeCCCCC
Q 003890 206 SGLSVVAILNGSGFDKTAFAADTYNNNHIKFYFDCLAWVRVSIAYD 251 (788)
Q Consensus 206 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~ 251 (788)
..-.++.|.|.+|+||||+|.+++.. ....=..++|++....++
T Consensus 17 ~~g~i~~i~G~~GsGKT~l~~~~a~~--~~~~g~~v~yi~~e~~~~ 60 (218)
T cd01394 17 ERGTVTQVYGPPGTGKTNIAIQLAVE--TAGQGKKVAYIDTEGLSS 60 (218)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH--HHhcCCeEEEEECCCCCH
Confidence 34679999999999999999998763 322223477887655544
No 255
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=95.66 E-value=0.054 Score=57.51 Aligned_cols=104 Identities=12% Similarity=0.076 Sum_probs=58.9
Q ss_pred HHHHHhcCCCCcEEEEEEcCCCChHHHHHHHHHcccCccc----ccceeEEEEeCCCCChHHHHHHHHHHcCCCCCC---
Q 003890 197 LFDLLIEGPSGLSVVAILNGSGFDKTAFAADTYNNNHIKF----YFDCLAWVRVSIAYDSGKILDDIIKSVMPPSRV--- 269 (788)
Q Consensus 197 i~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~----~F~~~~wv~vs~~~~~~~~~~~il~~l~~~~~~--- 269 (788)
+-..|..+=..-.++.|+|.+|+|||||+..++....... .-..++|++....++..++. .+++.++.....
T Consensus 85 lD~ll~gGi~~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~Rl~-~ia~~~~~~~~~~l~ 163 (316)
T TIGR02239 85 LDKLLGGGIETGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPERLL-AIAERYGLNPEDVLD 163 (316)
T ss_pred HHHHhcCCCCCCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHHHH-HHHHHcCCChHHhhc
Confidence 3333433334578999999999999999998875322211 12357999888877777643 445554332210
Q ss_pred --cccccCCHHHHHHHH---HHHhcC-CcEEEEEeCCC
Q 003890 270 --SVIIGEDYKLKKTIL---RDYLTN-KKYFIVLDDVF 301 (788)
Q Consensus 270 --~~~~~~~~~~~~~~l---~~~l~~-kr~LlVLDdvw 301 (788)
......+.++....+ ...+.. +--|||+|-+-
T Consensus 164 ~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~LvVIDSI~ 201 (316)
T TIGR02239 164 NVAYARAYNTDHQLQLLQQAAAMMSESRFALLIVDSAT 201 (316)
T ss_pred cEEEEecCChHHHHHHHHHHHHhhccCCccEEEEECcH
Confidence 000122333333333 333433 44588888874
No 256
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=95.65 E-value=0.024 Score=59.88 Aligned_cols=89 Identities=15% Similarity=0.072 Sum_probs=56.2
Q ss_pred CCcEEEEEEcCCCChHHHHHHHHHcccCcccccceeEEEEeCCCCChHHHHHHHHHHcCCCCCC-cccccCCHHHHHHHH
Q 003890 206 SGLSVVAILNGSGFDKTAFAADTYNNNHIKFYFDCLAWVRVSIAYDSGKILDDIIKSVMPPSRV-SVIIGEDYKLKKTIL 284 (788)
Q Consensus 206 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~~l~~~~~~-~~~~~~~~~~~~~~l 284 (788)
+.-+++-|+|.+|+||||||.+++.. ....-..++|++....++.. .++.++..... -..+..+.++....+
T Consensus 53 p~G~iteI~Gp~GsGKTtLal~~~~~--~~~~g~~~vyId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~i~ 125 (325)
T cd00983 53 PKGRIIEIYGPESSGKTTLALHAIAE--AQKLGGTVAFIDAEHALDPV-----YAKKLGVDLDNLLISQPDTGEQALEIA 125 (325)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCCEEEECccccHHHH-----HHHHcCCCHHHheecCCCCHHHHHHHH
Confidence 34678889999999999999987763 33333458899877766653 23334332110 001233456666666
Q ss_pred HHHhc-CCcEEEEEeCCC
Q 003890 285 RDYLT-NKKYFIVLDDVF 301 (788)
Q Consensus 285 ~~~l~-~kr~LlVLDdvw 301 (788)
...++ +.--++|+|-|-
T Consensus 126 ~~li~s~~~~lIVIDSva 143 (325)
T cd00983 126 DSLVRSGAVDLIVVDSVA 143 (325)
T ss_pred HHHHhccCCCEEEEcchH
Confidence 66554 356699999874
No 257
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.63 E-value=0.0016 Score=64.80 Aligned_cols=81 Identities=17% Similarity=0.168 Sum_probs=63.7
Q ss_pred cCCccccEEEecCCCCCCCCccccCCCCccEEEecCCCCcccChhhcCCCCCcEEEccCCCCcccch--hhhccccccee
Q 003890 545 EKFKHLRILNLGSAVLVQFPPGLENLFHLKYLKLNIPSLKCLPSLLCTLLNLQTLEMPSSYVDQSPE--DIWMMQKLMHL 622 (788)
Q Consensus 545 ~~l~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~lp~--~l~~L~~L~~L 622 (788)
..+.+.+.|++.||.+..+ .-..+++.|+.|.|+-|.|+.|. .+..+++|+.|+|+.|.+..+.+ -+.++++|+.|
T Consensus 16 sdl~~vkKLNcwg~~L~DI-sic~kMp~lEVLsLSvNkIssL~-pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L 93 (388)
T KOG2123|consen 16 SDLENVKKLNCWGCGLDDI-SICEKMPLLEVLSLSVNKISSLA-PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL 93 (388)
T ss_pred hHHHHhhhhcccCCCccHH-HHHHhcccceeEEeeccccccch-hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence 3466778889999988765 23456889999999999999883 67888999999999997777655 37788888888
Q ss_pred eccCc
Q 003890 623 NFGSI 627 (788)
Q Consensus 623 ~l~~~ 627 (788)
.|..|
T Consensus 94 WL~EN 98 (388)
T KOG2123|consen 94 WLDEN 98 (388)
T ss_pred hhccC
Confidence 88654
No 258
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=95.63 E-value=0.087 Score=50.83 Aligned_cols=102 Identities=15% Similarity=0.081 Sum_probs=55.9
Q ss_pred cEEEEEEcCCCChHHHHHHHHHcccCcccccceeEEEE------eCCCCChHHHHHHHHHHcCCCCCCcccccCCHHHHH
Q 003890 208 LSVVAILNGSGFDKTAFAADTYNNNHIKFYFDCLAWVR------VSIAYDSGKILDDIIKSVMPPSRVSVIIGEDYKLKK 281 (788)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~------vs~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~ 281 (788)
-.+++|+|..|.|||||++.+..-. ......+++. +.+... -..-+...
T Consensus 25 Ge~~~l~G~nGsGKSTLl~~l~Gl~---~p~~G~i~~~g~~i~~~~q~~~----------------------LSgGq~qr 79 (177)
T cd03222 25 GEVIGIVGPNGTGKTTAVKILAGQL---IPNGDNDEWDGITPVYKPQYID----------------------LSGGELQR 79 (177)
T ss_pred CCEEEEECCCCChHHHHHHHHHcCC---CCCCcEEEECCEEEEEEcccCC----------------------CCHHHHHH
Confidence 4599999999999999999998732 1222222221 111111 11112223
Q ss_pred HHHHHHhcCCcEEEEEeCCCC--ChhhHHHHhhhcCCC-CC-CcEEEEecCChHHHh
Q 003890 282 TILRDYLTNKKYFIVLDDVFN--DSDIWDDLEQVLPDN-QN-GSRVLITVTDLDLLE 334 (788)
Q Consensus 282 ~~l~~~l~~kr~LlVLDdvw~--~~~~~~~l~~~l~~~-~~-gskIivTTR~~~v~~ 334 (788)
-.+.+.+..+.-+++||+--. +....+.+...+... .. +..||++|.+.....
T Consensus 80 v~laral~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~ 136 (177)
T cd03222 80 VAIAAALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVLD 136 (177)
T ss_pred HHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHHHHH
Confidence 345555666777899998752 333333333333221 12 255777777765544
No 259
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=95.62 E-value=0.077 Score=56.30 Aligned_cols=146 Identities=13% Similarity=0.075 Sum_probs=77.9
Q ss_pred CCcccchhcHHHHHHHHhcCCCCcEEEEEEcCCCChHHHHHHHHHccc---C----------cccccceeEEEEeCCCCC
Q 003890 185 LDISEFERGREELFDLLIEGPSGLSVVAILNGSGFDKTAFAADTYNNN---H----------IKFYFDCLAWVRVSIAYD 251 (788)
Q Consensus 185 ~~~vGr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~---~----------~~~~F~~~~wv~vs~~~~ 251 (788)
.+++|-+..++.+.+.+..+. -....-++|..|+||+++|..+.+.- . ....++...|+.-....+
T Consensus 4 ~~iiGq~~~~~~L~~~i~~~r-l~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~~~~~ 82 (314)
T PRK07399 4 ANLIGQPLAIELLTAAIKQNR-IAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPTYQHQ 82 (314)
T ss_pred HHhCCHHHHHHHHHHHHHhCC-CCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEecccccc
Confidence 568999999999999887753 24788899999999999887765421 1 022334455653210000
Q ss_pred hHHHHHHHHHHcCCCCCCcccccCCHHHHHHHHHHHh-----cCCcEEEEEeCCCC-ChhhHHHHhhhcCCCCCCcEEEE
Q 003890 252 SGKILDDIIKSVMPPSRVSVIIGEDYKLKKTILRDYL-----TNKKYFIVLDDVFN-DSDIWDDLEQVLPDNQNGSRVLI 325 (788)
Q Consensus 252 ~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~~l-----~~kr~LlVLDdvw~-~~~~~~~l~~~l~~~~~gskIiv 325 (788)
-..+..+-+...+.... .......++. +.+.+.+ .+++-++|+|++.. +....+.+...+-...+..=|++
T Consensus 83 g~~~~~~~~~~~~~~~~--~~~~I~id~i-r~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEEPp~~~fILi 159 (314)
T PRK07399 83 GKLITASEAEEAGLKRK--APPQIRLEQI-REIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEPGNGTLILI 159 (314)
T ss_pred ccccchhhhhhcccccc--ccccCcHHHH-HHHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhCCCCCeEEEE
Confidence 00111111122211100 0012223333 2333333 35667899999853 45667778777765443333444
Q ss_pred ecCChHHHh
Q 003890 326 TVTDLDLLE 334 (788)
Q Consensus 326 TTR~~~v~~ 334 (788)
|+....+..
T Consensus 160 ~~~~~~Ll~ 168 (314)
T PRK07399 160 APSPESLLP 168 (314)
T ss_pred ECChHhCcH
Confidence 544444443
No 260
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=95.61 E-value=0.0099 Score=54.71 Aligned_cols=31 Identities=13% Similarity=0.190 Sum_probs=24.5
Q ss_pred cEEEEEEcCCCChHHHHHHHHHcccCcccc-cce
Q 003890 208 LSVVAILNGSGFDKTAFAADTYNNNHIKFY-FDC 240 (788)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-F~~ 240 (788)
.--|+|.||+|+||||+++.+.+. .++. |..
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e~--L~~~g~kv 36 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAEK--LREKGYKV 36 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHH--HHhcCcee
Confidence 456899999999999999999983 4333 555
No 261
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=95.57 E-value=0.066 Score=51.62 Aligned_cols=121 Identities=16% Similarity=0.074 Sum_probs=59.5
Q ss_pred cEEEEEEcCCCChHHHHHHHHHcccCcccccceeEEEEeCC--CCChHHHHHHHHHHcCCCCCCcccc--------cCCH
Q 003890 208 LSVVAILNGSGFDKTAFAADTYNNNHIKFYFDCLAWVRVSI--AYDSGKILDDIIKSVMPPSRVSVII--------GEDY 277 (788)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~--~~~~~~~~~~il~~l~~~~~~~~~~--------~~~~ 277 (788)
-.+++|+|..|.|||||.+.+..-. ......+++.-.. ..+..... ..+.......... -..-
T Consensus 28 Ge~~~i~G~nGsGKStLl~~l~G~~---~~~~G~i~~~g~~~~~~~~~~~~----~~i~~~~q~~~~~~~tv~~~lLS~G 100 (173)
T cd03246 28 GESLAIIGPSGSGKSTLARLILGLL---RPTSGRVRLDGADISQWDPNELG----DHVGYLPQDDELFSGSIAENILSGG 100 (173)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcc---CCCCCeEEECCEEcccCCHHHHH----hheEEECCCCccccCcHHHHCcCHH
Confidence 4589999999999999999999732 2222333321100 11111111 1111100000000 0111
Q ss_pred HHHHHHHHHHhcCCcEEEEEeCCCC--ChhhHHHHhhhcCC-CCCCcEEEEecCChHHHhh
Q 003890 278 KLKKTILRDYLTNKKYFIVLDDVFN--DSDIWDDLEQVLPD-NQNGSRVLITVTDLDLLES 335 (788)
Q Consensus 278 ~~~~~~l~~~l~~kr~LlVLDdvw~--~~~~~~~l~~~l~~-~~~gskIivTTR~~~v~~~ 335 (788)
+...-.+.+.+..+.=+++||+... +......+...+.. ...|..||++|.+......
T Consensus 101 ~~qrv~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~ 161 (173)
T cd03246 101 QRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPETLAS 161 (173)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHh
Confidence 1222234455556666889998862 33333333333322 1236678888888776653
No 262
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=95.56 E-value=0.1 Score=49.65 Aligned_cols=128 Identities=15% Similarity=0.161 Sum_probs=72.9
Q ss_pred cEEEEEEcCCCChHHHHHHHHHcccCcccccceeEEEE---------------------eCCCC----------------
Q 003890 208 LSVVAILNGSGFDKTAFAADTYNNNHIKFYFDCLAWVR---------------------VSIAY---------------- 250 (788)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~---------------------vs~~~---------------- 250 (788)
-..+-++|.+|.|||||.+.+|..++... ..+|+. |-|+|
T Consensus 28 Gef~fl~GpSGAGKSTllkLi~~~e~pt~---G~i~~~~~dl~~l~~~~iP~LRR~IGvVFQD~rLL~~~tvyeNVA~pL 104 (223)
T COG2884 28 GEFVFLTGPSGAGKSTLLKLIYGEERPTR---GKILVNGHDLSRLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVALPL 104 (223)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhhcCCC---ceEEECCeecccccccccchhhheeeeEeeeccccccchHhhhhhhhh
Confidence 45888999999999999999998543321 133331 11211
Q ss_pred -----ChHHHHH---HHHHHcCCCCCC--cccccCCHHHHHHHHHHHhcCCcEEEEEeCCCC---ChhhHHHHhhhcCCC
Q 003890 251 -----DSGKILD---DIIKSVMPPSRV--SVIIGEDYKLKKTILRDYLTNKKYFIVLDDVFN---DSDIWDDLEQVLPDN 317 (788)
Q Consensus 251 -----~~~~~~~---~il~~l~~~~~~--~~~~~~~~~~~~~~l~~~l~~kr~LlVLDdvw~---~~~~~~~l~~~l~~~ 317 (788)
...++.+ +.++..+..... -+.+-+.-++-.-.|.+.+-+++-+|+=|.=-. ....|+-+...-.-+
T Consensus 105 ~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeein 184 (223)
T COG2884 105 RVIGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEIN 184 (223)
T ss_pred hccCCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHh
Confidence 1222222 223333322211 011222333444456677778888899885431 334554433322235
Q ss_pred CCCcEEEEecCChHHHhhccc
Q 003890 318 QNGSRVLITVTDLDLLESLEM 338 (788)
Q Consensus 318 ~~gskIivTTR~~~v~~~~~~ 338 (788)
..|..|+++|-+.++.+.+..
T Consensus 185 r~GtTVl~ATHd~~lv~~~~~ 205 (223)
T COG2884 185 RLGTTVLMATHDLELVNRMRH 205 (223)
T ss_pred hcCcEEEEEeccHHHHHhccC
Confidence 579999999999999887754
No 263
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=95.55 E-value=0.078 Score=55.03 Aligned_cols=91 Identities=13% Similarity=0.063 Sum_probs=48.4
Q ss_pred CcEEEEEEcCCCChHHHHHHHHHcccCcccccceeEEEEeCCCCCh--HHHHHHHHHHcCCCCCCcccccCCH-HHHHHH
Q 003890 207 GLSVVAILNGSGFDKTAFAADTYNNNHIKFYFDCLAWVRVSIAYDS--GKILDDIIKSVMPPSRVSVIIGEDY-KLKKTI 283 (788)
Q Consensus 207 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~--~~~~~~il~~l~~~~~~~~~~~~~~-~~~~~~ 283 (788)
..++|.++|.+|+||||++..+... ....-..+.+++... +.. .+-++...+..+...... ....+. ......
T Consensus 71 ~~~vi~l~G~~G~GKTTt~akLA~~--l~~~g~~V~li~~D~-~r~~a~~ql~~~~~~~~i~~~~~-~~~~dp~~~~~~~ 146 (272)
T TIGR00064 71 KPNVILFVGVNGVGKTTTIAKLANK--LKKQGKSVLLAAGDT-FRAAAIEQLEEWAKRLGVDVIKQ-KEGADPAAVAFDA 146 (272)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH--HHhcCCEEEEEeCCC-CCHHHHHHHHHHHHhCCeEEEeC-CCCCCHHHHHHHH
Confidence 4789999999999999988887763 333222455665432 222 233344445544321100 011222 222344
Q ss_pred HHHHhcCCcEEEEEeCCC
Q 003890 284 LRDYLTNKKYFIVLDDVF 301 (788)
Q Consensus 284 l~~~l~~kr~LlVLDdvw 301 (788)
+.....+..=++++|-.-
T Consensus 147 l~~~~~~~~D~ViIDT~G 164 (272)
T TIGR00064 147 IQKAKARNIDVVLIDTAG 164 (272)
T ss_pred HHHHHHCCCCEEEEeCCC
Confidence 444444445578888774
No 264
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=95.52 E-value=0.0063 Score=60.53 Aligned_cols=86 Identities=20% Similarity=0.200 Sum_probs=52.4
Q ss_pred cCCccccEEEecCCCCC-----CCCccccCCCCccEEEecCCC---C-cccCh-------hhcCCCCCcEEEccCCCC-c
Q 003890 545 EKFKHLRILNLGSAVLV-----QFPPGLENLFHLKYLKLNIPS---L-KCLPS-------LLCTLLNLQTLEMPSSYV-D 607 (788)
Q Consensus 545 ~~l~~L~~L~L~~~~l~-----~lp~~i~~L~~L~~L~L~~~~---i-~~lp~-------~i~~L~~L~~L~L~~~~l-~ 607 (788)
..+..+..++|++|.|. .+...|.+-.+|+..+++.-. . ..+|+ .+-+|++|+..+|+.|-+ .
T Consensus 27 ~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~ 106 (388)
T COG5238 27 EMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGS 106 (388)
T ss_pred HhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCc
Confidence 34666777777777765 233455556667776665421 1 13333 445778888888888822 2
Q ss_pred ccch----hhhcccccceeeccCccCC
Q 003890 608 QSPE----DIWMMQKLMHLNFGSITLP 630 (788)
Q Consensus 608 ~lp~----~l~~L~~L~~L~l~~~~~~ 630 (788)
..|+ -+++-+.|.||.+++|.+-
T Consensus 107 ~~~e~L~d~is~~t~l~HL~l~NnGlG 133 (388)
T COG5238 107 EFPEELGDLISSSTDLVHLKLNNNGLG 133 (388)
T ss_pred ccchHHHHHHhcCCCceeEEeecCCCC
Confidence 3333 3566778888888877554
No 265
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=95.51 E-value=0.087 Score=56.57 Aligned_cols=41 Identities=12% Similarity=0.129 Sum_probs=33.7
Q ss_pred hhcHHHHHHHHhcCC-CCcEEEEEEcCCCChHHHHHHHHHcc
Q 003890 191 ERGREELFDLLIEGP-SGLSVVAILNGSGFDKTAFAADTYNN 231 (788)
Q Consensus 191 ~~~~~~i~~~L~~~~-~~~~vi~I~G~gGiGKTtLa~~v~~~ 231 (788)
+.-.+.+.+.+...+ ....+|+|.|.=|+||||+.+.+.+.
T Consensus 2 ~~~a~~la~~I~~~~~~~~~~IgL~G~WGsGKSs~l~~l~~~ 43 (325)
T PF07693_consen 2 KPYAKALAEIIKNPDSDDPFVIGLYGEWGSGKSSFLNMLKEE 43 (325)
T ss_pred hHHHHHHHHHHhccCCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 445677788887653 56899999999999999999999884
No 266
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=95.50 E-value=0.091 Score=50.59 Aligned_cols=21 Identities=29% Similarity=0.252 Sum_probs=19.3
Q ss_pred EEEEEcCCCChHHHHHHHHHc
Q 003890 210 VVAILNGSGFDKTAFAADTYN 230 (788)
Q Consensus 210 vi~I~G~gGiGKTtLa~~v~~ 230 (788)
++.++|++|+||||++..+..
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~ 22 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLAL 22 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 688999999999999998887
No 267
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=95.48 E-value=0.23 Score=59.15 Aligned_cols=47 Identities=19% Similarity=0.053 Sum_probs=37.8
Q ss_pred CCcccchhcHHHHHHHHhcCCCCcEEEEEEcCCCChHHHHHHHHHcc
Q 003890 185 LDISEFERGREELFDLLIEGPSGLSVVAILNGSGFDKTAFAADTYNN 231 (788)
Q Consensus 185 ~~~vGr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 231 (788)
..++|....+..+.+.+..-...-.-|-|+|..|+|||++|+.++..
T Consensus 376 ~~liG~S~~~~~~~~~~~~~a~~~~pVLI~GE~GTGK~~lA~~ih~~ 422 (686)
T PRK15429 376 GEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNL 422 (686)
T ss_pred cceeecCHHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHHh
Confidence 56899998888888777543333456789999999999999999974
No 268
>PRK14974 cell division protein FtsY; Provisional
Probab=95.44 E-value=0.094 Score=55.91 Aligned_cols=115 Identities=12% Similarity=0.112 Sum_probs=57.1
Q ss_pred CcEEEEEEcCCCChHHHHHHHHHcccCccc-ccceeEEEEeCCCC--ChHHHHHHHHHHcCCCCCCcccccCCHHHH-HH
Q 003890 207 GLSVVAILNGSGFDKTAFAADTYNNNHIKF-YFDCLAWVRVSIAY--DSGKILDDIIKSVMPPSRVSVIIGEDYKLK-KT 282 (788)
Q Consensus 207 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-~F~~~~wv~vs~~~--~~~~~~~~il~~l~~~~~~~~~~~~~~~~~-~~ 282 (788)
+..+|.++|++|+||||++..++.. ... .+. ++.+. ...+ ...+-++.....++..... .....+.... ..
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~--l~~~g~~-V~li~-~Dt~R~~a~eqL~~~a~~lgv~v~~-~~~g~dp~~v~~~ 213 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYY--LKKNGFS-VVIAA-GDTFRAGAIEQLEEHAERLGVKVIK-HKYGADPAAVAYD 213 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH--HHHcCCe-EEEec-CCcCcHHHHHHHHHHHHHcCCceec-ccCCCCHHHHHHH
Confidence 4689999999999999987777652 222 232 33343 2222 2333345556666543221 0112232222 23
Q ss_pred HHHHHhcCCcEEEEEeCCCC---ChhhHHHHhhhcCCCCCCcEEEEe
Q 003890 283 ILRDYLTNKKYFIVLDDVFN---DSDIWDDLEQVLPDNQNGSRVLIT 326 (788)
Q Consensus 283 ~l~~~l~~kr~LlVLDdvw~---~~~~~~~l~~~l~~~~~gskIivT 326 (788)
.+...-....=++++|-.-. +...++.+........+...++|.
T Consensus 214 ai~~~~~~~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl 260 (336)
T PRK14974 214 AIEHAKARGIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVG 260 (336)
T ss_pred HHHHHHhCCCCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEee
Confidence 33322222223888998852 223445554433333344455554
No 269
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=95.44 E-value=0.14 Score=58.12 Aligned_cols=135 Identities=13% Similarity=0.058 Sum_probs=87.3
Q ss_pred CCcccchhcHHHHHHHHhc---CCCCcEEEEEEcCCCChHHHHHHHHHcccC---cccccce--eEEEEeCCCCChHHHH
Q 003890 185 LDISEFERGREELFDLLIE---GPSGLSVVAILNGSGFDKTAFAADTYNNNH---IKFYFDC--LAWVRVSIAYDSGKIL 256 (788)
Q Consensus 185 ~~~vGr~~~~~~i~~~L~~---~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~---~~~~F~~--~~wv~vs~~~~~~~~~ 256 (788)
..+-+|+.+..+|-+++.. .+..-+.+-|.|-+|.|||..+..|.+..+ -++.-+. .+.|+.-.-..+.++.
T Consensus 396 ~sLpcRe~E~~~I~~f~~~~i~~~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l~~~~~~Y 475 (767)
T KOG1514|consen 396 ESLPCRENEFSEIEDFLRSFISDQGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRLASPREIY 475 (767)
T ss_pred ccccchhHHHHHHHHHHHhhcCCCCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcceeecCHHHHH
Confidence 4466899999999999854 223355899999999999999999998422 1222222 3333333445688999
Q ss_pred HHHHHHcCCCCCCcccccCCHHHHHHHHHHHhc-----CCcEEEEEeCCCC--ChhhHHHHhhhcCC-CCCCcEEEEec
Q 003890 257 DDIIKSVMPPSRVSVIIGEDYKLKKTILRDYLT-----NKKYFIVLDDVFN--DSDIWDDLEQVLPD-NQNGSRVLITV 327 (788)
Q Consensus 257 ~~il~~l~~~~~~~~~~~~~~~~~~~~l~~~l~-----~kr~LlVLDdvw~--~~~~~~~l~~~l~~-~~~gskIivTT 327 (788)
..|+..+.+... ......+.|..++. .+..++++|++.. ... -+-+...|.| ..++||.+|.+
T Consensus 476 ~~I~~~lsg~~~-------~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~-QdVlYn~fdWpt~~~sKLvvi~ 546 (767)
T KOG1514|consen 476 EKIWEALSGERV-------TWDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRS-QDVLYNIFDWPTLKNSKLVVIA 546 (767)
T ss_pred HHHHHhcccCcc-------cHHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhccc-HHHHHHHhcCCcCCCCceEEEE
Confidence 999999987754 34455556666664 3577888888741 111 1223344554 35788877654
No 270
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=95.44 E-value=0.06 Score=59.17 Aligned_cols=91 Identities=14% Similarity=0.205 Sum_probs=48.9
Q ss_pred cEEEEEEcCCCChHHHHHHHHHcccCcccccceeEEEEeCCCCChHHHHHHHHHHcCCCCCC--cccccCC-----HHHH
Q 003890 208 LSVVAILNGSGFDKTAFAADTYNNNHIKFYFDCLAWVRVSIAYDSGKILDDIIKSVMPPSRV--SVIIGED-----YKLK 280 (788)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~~l~~~~~~--~~~~~~~-----~~~~ 280 (788)
-..++|+|..|+|||||++.+.... .....+++..--..-++.++....+.......-. ...+... .-..
T Consensus 165 Gqri~I~G~SGsGKTTLL~~Ia~l~---~pd~gvv~liGergrev~e~~~~~l~~~r~rtI~vV~qsd~~~~~r~~~~~~ 241 (450)
T PRK06002 165 GQRIGIFAGSGVGKSTLLAMLARAD---AFDTVVIALVGERGREVREFLEDTLADNLKKAVAVVATSDESPMMRRLAPLT 241 (450)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC---CCCeeeeeecccCCccHHHHhHHHHHHhhCCeEEEEEcCCCCHHHHHHHHHH
Confidence 4579999999999999999988632 2222344443223334444444444433111000 0001101 1112
Q ss_pred HHHHHHHh--cCCcEEEEEeCCC
Q 003890 281 KTILRDYL--TNKKYFIVLDDVF 301 (788)
Q Consensus 281 ~~~l~~~l--~~kr~LlVLDdvw 301 (788)
.-.+.+++ +|+++|+++||+-
T Consensus 242 a~~iAEyfrd~G~~Vll~~DslT 264 (450)
T PRK06002 242 ATAIAEYFRDRGENVLLIVDSVT 264 (450)
T ss_pred HHHHHHHHHHcCCCEEEeccchH
Confidence 22344444 5899999999995
No 271
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=95.43 E-value=0.054 Score=52.72 Aligned_cols=21 Identities=33% Similarity=0.408 Sum_probs=19.6
Q ss_pred EEEEEcCCCChHHHHHHHHHc
Q 003890 210 VVAILNGSGFDKTAFAADTYN 230 (788)
Q Consensus 210 vi~I~G~gGiGKTtLa~~v~~ 230 (788)
||.|+|++|+||||+|+.+..
T Consensus 1 ~i~i~G~pGsGKst~a~~la~ 21 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVE 21 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999987
No 272
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.43 E-value=0.81 Score=51.17 Aligned_cols=59 Identities=17% Similarity=0.073 Sum_probs=34.1
Q ss_pred cEEEEEEcCCCChHHHHHHHHHcccCcccccceeEEEEeCC-CCChHHHHHHHHHHcCCC
Q 003890 208 LSVVAILNGSGFDKTAFAADTYNNNHIKFYFDCLAWVRVSI-AYDSGKILDDIIKSVMPP 266 (788)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~-~~~~~~~~~~il~~l~~~ 266 (788)
-+|++++|..|+||||++..++.....+..-..+..+.... .....+-++...+.++..
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~RigA~EQLr~~AeilGVp 315 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIGGHEQLRIYGKILGVP 315 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCccchhHHHHHHHHHHHhCCC
Confidence 47999999999999999988886321121112345554322 223334444445554433
No 273
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=95.41 E-value=0.047 Score=59.08 Aligned_cols=124 Identities=12% Similarity=0.106 Sum_probs=67.4
Q ss_pred CCcccchhcH-HHHHHHHhc-CCCCcEEEEEEcCCCChHHHHHHHHHcccCcccccceeEEEEeCCCCChHHHHHHHHHH
Q 003890 185 LDISEFERGR-EELFDLLIE-GPSGLSVVAILNGSGFDKTAFAADTYNNNHIKFYFDCLAWVRVSIAYDSGKILDDIIKS 262 (788)
Q Consensus 185 ~~~vGr~~~~-~~i~~~L~~-~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~~ 262 (788)
..++|-.... -.+...+.+ .......+-|+|..|.|||.|++++.+ ......+....++++. +....+++..
T Consensus 88 nFv~g~~N~~A~aa~~~va~~~g~~~nplfi~G~~GlGKTHLl~Aign--~~~~~~~~a~v~y~~s----e~f~~~~v~a 161 (408)
T COG0593 88 NFVVGPSNRLAYAAAKAVAENPGGAYNPLFIYGGVGLGKTHLLQAIGN--EALANGPNARVVYLTS----EDFTNDFVKA 161 (408)
T ss_pred heeeCCchHHHHHHHHHHHhccCCcCCcEEEECCCCCCHHHHHHHHHH--HHHhhCCCceEEeccH----HHHHHHHHHH
Confidence 3455543332 333333333 223477899999999999999999999 6666666544444333 3334444444
Q ss_pred cCCCCCCcccccCCHHHHHHHHHHHhcCCcEEEEEeCCCC--ChhhH-HHHhhhcCC-CCCCcEEEEecCC
Q 003890 263 VMPPSRVSVIIGEDYKLKKTILRDYLTNKKYFIVLDDVFN--DSDIW-DDLEQVLPD-NQNGSRVLITVTD 329 (788)
Q Consensus 263 l~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVLDdvw~--~~~~~-~~l~~~l~~-~~~gskIivTTR~ 329 (788)
+... -....++.. .-=++++||++. ..+.| +.+.-.|.. ...|-.||+|++.
T Consensus 162 ~~~~-------------~~~~Fk~~y--~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr 217 (408)
T COG0593 162 LRDN-------------EMEKFKEKY--SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDR 217 (408)
T ss_pred HHhh-------------hHHHHHHhh--ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCC
Confidence 3221 123444444 333888999972 12222 222222221 1223488888863
No 274
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=95.40 E-value=0.089 Score=54.27 Aligned_cols=90 Identities=14% Similarity=-0.002 Sum_probs=58.4
Q ss_pred CCcEEEEEEcCCCChHHHHHHHHHcccCcccccceeEEEEeCCCCChHHHHHHHHHH-cCCCCCCcccccCCHH---HHH
Q 003890 206 SGLSVVAILNGSGFDKTAFAADTYNNNHIKFYFDCLAWVRVSIAYDSGKILDDIIKS-VMPPSRVSVIIGEDYK---LKK 281 (788)
Q Consensus 206 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~~-l~~~~~~~~~~~~~~~---~~~ 281 (788)
+.-+++=|+|+.|.||||+|-+++-. .+..-...+|++.-..+++..+. ++... +..-... +..+.+ .+.
T Consensus 58 ~~g~ItEiyG~~gsGKT~lal~~~~~--aq~~g~~a~fIDtE~~l~p~r~~-~l~~~~~d~l~v~---~~~~~e~q~~i~ 131 (279)
T COG0468 58 PRGRITEIYGPESSGKTTLALQLVAN--AQKPGGKAAFIDTEHALDPERAK-QLGVDLLDNLLVS---QPDTGEQQLEIA 131 (279)
T ss_pred ccceEEEEecCCCcchhhHHHHHHHH--hhcCCCeEEEEeCCCCCCHHHHH-HHHHhhhcceeEe---cCCCHHHHHHHH
Confidence 45689999999999999999888874 44444479999999988877655 34444 2221110 222333 334
Q ss_pred HHHHHHhcCCcEEEEEeCCC
Q 003890 282 TILRDYLTNKKYFIVLDDVF 301 (788)
Q Consensus 282 ~~l~~~l~~kr~LlVLDdvw 301 (788)
..+.+....+--|+|+|-|-
T Consensus 132 ~~~~~~~~~~i~LvVVDSva 151 (279)
T COG0468 132 EKLARSGAEKIDLLVVDSVA 151 (279)
T ss_pred HHHHHhccCCCCEEEEecCc
Confidence 44444444446699999985
No 275
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.37 E-value=0.045 Score=56.08 Aligned_cols=80 Identities=10% Similarity=0.143 Sum_probs=51.6
Q ss_pred cEEEEEEcCCCChHHHHHHHHHcccCc--ccccceeEEEEeCCCCChHHHHHHHHHHcCCCCCCcccccCCHHHHHHHHH
Q 003890 208 LSVVAILNGSGFDKTAFAADTYNNNHI--KFYFDCLAWVRVSIAYDSGKILDDIIKSVMPPSRVSVIIGEDYKLKKTILR 285 (788)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~~~~~--~~~F~~~~wv~vs~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~l~ 285 (788)
.++|-++|++|.|||+|.+++++.-.+ ...|....-+.++.. .+.++...+ ...-...+.++|+
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEinsh--------sLFSKWFsE------SgKlV~kmF~kI~ 242 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINSH--------SLFSKWFSE------SGKLVAKMFQKIQ 242 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEehh--------HHHHHHHhh------hhhHHHHHHHHHH
Confidence 588999999999999999999996544 355555555554332 233333222 2234456667777
Q ss_pred HHhcCCcE--EEEEeCCC
Q 003890 286 DYLTNKKY--FIVLDDVF 301 (788)
Q Consensus 286 ~~l~~kr~--LlVLDdvw 301 (788)
+.++++.. .+.+|.|.
T Consensus 243 ELv~d~~~lVfvLIDEVE 260 (423)
T KOG0744|consen 243 ELVEDRGNLVFVLIDEVE 260 (423)
T ss_pred HHHhCCCcEEEEEeHHHH
Confidence 88877554 34478774
No 276
>PRK04040 adenylate kinase; Provisional
Probab=95.35 E-value=0.04 Score=53.81 Aligned_cols=23 Identities=22% Similarity=0.332 Sum_probs=21.3
Q ss_pred cEEEEEEcCCCChHHHHHHHHHc
Q 003890 208 LSVVAILNGSGFDKTAFAADTYN 230 (788)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~ 230 (788)
..+|+|+|++|+||||+++.+.+
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~ 24 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALE 24 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHH
Confidence 46899999999999999999988
No 277
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=95.34 E-value=0.046 Score=59.52 Aligned_cols=23 Identities=22% Similarity=0.190 Sum_probs=20.8
Q ss_pred cEEEEEEcCCCChHHHHHHHHHc
Q 003890 208 LSVVAILNGSGFDKTAFAADTYN 230 (788)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~ 230 (788)
-.+++|+|+.|.||||||+.+.-
T Consensus 362 G~~lgIIGPSgSGKSTLaR~lvG 384 (580)
T COG4618 362 GEALGIIGPSGSGKSTLARLLVG 384 (580)
T ss_pred CceEEEECCCCccHHHHHHHHHc
Confidence 35899999999999999999875
No 278
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.33 E-value=0.11 Score=55.99 Aligned_cols=86 Identities=20% Similarity=0.134 Sum_probs=50.2
Q ss_pred cEEEEEEcCCCChHHHHHHHHHcccCccccc--ceeEEEEeCC-CCChHHHHHHHHHHcCCCCCCcccccCCHHHHHHHH
Q 003890 208 LSVVAILNGSGFDKTAFAADTYNNNHIKFYF--DCLAWVRVSI-AYDSGKILDDIIKSVMPPSRVSVIIGEDYKLKKTIL 284 (788)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F--~~~~wv~vs~-~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~l 284 (788)
-.++.++|+.|+||||++..+... ....+ ..+..++... .....+-++...+.++.... ...+..++...+
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~--~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~----~~~~~~~l~~~l 210 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAAR--CVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVH----AVKDGGDLQLAL 210 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH--HHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceE----ecCCcccHHHHH
Confidence 469999999999999999988873 22222 3455555322 23445555555666655432 222333343333
Q ss_pred HHHhcCCcEEEEEeCCC
Q 003890 285 RDYLTNKKYFIVLDDVF 301 (788)
Q Consensus 285 ~~~l~~kr~LlVLDdvw 301 (788)
. .+.++ -++++|..-
T Consensus 211 ~-~l~~~-DlVLIDTaG 225 (374)
T PRK14722 211 A-ELRNK-HMVLIDTIG 225 (374)
T ss_pred H-HhcCC-CEEEEcCCC
Confidence 3 34454 456689885
No 279
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.32 E-value=0.087 Score=50.77 Aligned_cols=122 Identities=12% Similarity=0.063 Sum_probs=61.6
Q ss_pred cEEEEEEcCCCChHHHHHHHHHcccCcccccceeEEEEeCCCCChHHHHHHHHHHcCCCCCCc-cccc--------CC-H
Q 003890 208 LSVVAILNGSGFDKTAFAADTYNNNHIKFYFDCLAWVRVSIAYDSGKILDDIIKSVMPPSRVS-VIIG--------ED-Y 277 (788)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~~l~~~~~~~-~~~~--------~~-~ 277 (788)
-.+++|+|..|.|||||++.+.... ......+++.-..-.+.. ...-..+..-.... .... .+ -
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~~---~~~~G~i~~~g~~~~~~~---~~~~~~i~~~~q~~~~~~~~tv~~~~~LS~G 99 (173)
T cd03230 26 GEIYGLLGPNGAGKTTLIKIILGLL---KPDSGEIKVLGKDIKKEP---EEVKRRIGYLPEEPSLYENLTVRENLKLSGG 99 (173)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC---CCCCeEEEECCEEcccch---HhhhccEEEEecCCccccCCcHHHHhhcCHH
Confidence 4589999999999999999998732 122334443211000000 01111111000000 0000 11 1
Q ss_pred HHHHHHHHHHhcCCcEEEEEeCCCC--ChhhHHHHhhhcCCC-CCCcEEEEecCChHHHhh
Q 003890 278 KLKKTILRDYLTNKKYFIVLDDVFN--DSDIWDDLEQVLPDN-QNGSRVLITVTDLDLLES 335 (788)
Q Consensus 278 ~~~~~~l~~~l~~kr~LlVLDdvw~--~~~~~~~l~~~l~~~-~~gskIivTTR~~~v~~~ 335 (788)
+...-.+.+.+..++=++++|+--. +....+.+...+... ..|..||++|.+...+..
T Consensus 100 ~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~~ 160 (173)
T cd03230 100 MKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAER 160 (173)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHH
Confidence 2222346666677888999998852 233333444433321 236678888888776553
No 280
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.31 E-value=0.011 Score=58.96 Aligned_cols=84 Identities=23% Similarity=0.182 Sum_probs=60.7
Q ss_pred hhhcCCccccEEEecCCC--CC-CCCccccCCCCccEEEecCCCCccc--ChhhcCCCCCcEEEccCCCCcccch----h
Q 003890 542 NFCEKFKHLRILNLGSAV--LV-QFPPGLENLFHLKYLKLNIPSLKCL--PSLLCTLLNLQTLEMPSSYVDQSPE----D 612 (788)
Q Consensus 542 ~~~~~l~~L~~L~L~~~~--l~-~lp~~i~~L~~L~~L~L~~~~i~~l--p~~i~~L~~L~~L~L~~~~l~~lp~----~ 612 (788)
..|..+++|+.|.++.|. +. .++.....+++|++|++++|+|..+ -..+..+.+|..|++.+|....+-. .
T Consensus 59 ~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~l~dyre~v 138 (260)
T KOG2739|consen 59 TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVTNLDDYREKV 138 (260)
T ss_pred ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCCccccccHHHHH
Confidence 456778889999999984 33 4555555668999999999987643 1246788889999999995544421 3
Q ss_pred hhcccccceeecc
Q 003890 613 IWMMQKLMHLNFG 625 (788)
Q Consensus 613 l~~L~~L~~L~l~ 625 (788)
+.-+++|++|+-.
T Consensus 139 f~ll~~L~~LD~~ 151 (260)
T KOG2739|consen 139 FLLLPSLKYLDGC 151 (260)
T ss_pred HHHhhhhcccccc
Confidence 5668888888754
No 281
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=95.30 E-value=0.2 Score=49.86 Aligned_cols=130 Identities=14% Similarity=0.169 Sum_probs=71.8
Q ss_pred cEEEEEEcCCCChHHHHHHHHHcccCcc-------------------cccce--eEEEEeCCCCC---------------
Q 003890 208 LSVVAILNGSGFDKTAFAADTYNNNHIK-------------------FYFDC--LAWVRVSIAYD--------------- 251 (788)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~-------------------~~F~~--~~wv~vs~~~~--------------- 251 (788)
-.+++|+|+.|+|||||...+..-.+.. ..|.. +-|| .|.|+
T Consensus 31 Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~R~~~iGfv--FQ~~nLl~~ltv~ENv~lpl 108 (226)
T COG1136 31 GEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLRRKKIGFV--FQNFNLLPDLTVLENVELPL 108 (226)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHHHHHhEEEE--CccCCCCCCCCHHHHHHhHH
Confidence 4589999999999999999887521110 11111 2222 22221
Q ss_pred ---------hHHHHHHHHHHcCCCCCCc--cc-ccCCHHHHHHHHHHHhcCCcEEEEEeCCCC--ChhhHHHHhhhcCC-
Q 003890 252 ---------SGKILDDIIKSVMPPSRVS--VI-IGEDYKLKKTILRDYLTNKKYFIVLDDVFN--DSDIWDDLEQVLPD- 316 (788)
Q Consensus 252 ---------~~~~~~~il~~l~~~~~~~--~~-~~~~~~~~~~~l~~~l~~kr~LlVLDdvw~--~~~~~~~l~~~l~~- 316 (788)
..+-...+++.++...... .+ +-+.-++-.-.|.+.|-..+-+|+-|+=-. +...=+.+...+..
T Consensus 109 ~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~ 188 (226)
T COG1136 109 LIAGKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLREL 188 (226)
T ss_pred HHcCCChhHHHHHHHHHHHhcCChhhhccCCchhcCHHHHHHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHH
Confidence 1233444555544442111 11 122233334456777778888888886531 22222233333332
Q ss_pred -CCCCcEEEEecCChHHHhhcccc
Q 003890 317 -NQNGSRVLITVTDLDLLESLEME 339 (788)
Q Consensus 317 -~~~gskIivTTR~~~v~~~~~~~ 339 (788)
...|..||+.|-+..+|..+...
T Consensus 189 ~~~~g~tii~VTHd~~lA~~~dr~ 212 (226)
T COG1136 189 NKERGKTIIMVTHDPELAKYADRV 212 (226)
T ss_pred HHhcCCEEEEEcCCHHHHHhCCEE
Confidence 13477899999999999987654
No 282
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.30 E-value=0.033 Score=62.79 Aligned_cols=72 Identities=19% Similarity=0.134 Sum_probs=46.2
Q ss_pred cEEEEEEcCCCChHHHHHHHHHcccCcccccceeEEEEeCCCC--ChHHHHHHHHHHcCCCCCCcccccCCHHHHHHHHH
Q 003890 208 LSVVAILNGSGFDKTAFAADTYNNNHIKFYFDCLAWVRVSIAY--DSGKILDDIIKSVMPPSRVSVIIGEDYKLKKTILR 285 (788)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~--~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~l~ 285 (788)
..-|-|.|..|+|||+||+++++... +.+.-.+.+++++.-- ..+.+++. +.....
T Consensus 431 ~~~Ill~G~~GsGKT~L~kal~~~~~-k~~~~hv~~v~Cs~l~~~~~e~iQk~---------------------l~~vfs 488 (952)
T KOG0735|consen 431 HGNILLNGPKGSGKTNLVKALFDYYS-KDLIAHVEIVSCSTLDGSSLEKIQKF---------------------LNNVFS 488 (952)
T ss_pred cccEEEeCCCCCCHhHHHHHHHHHhc-cccceEEEEEechhccchhHHHHHHH---------------------HHHHHH
Confidence 45678999999999999999999433 3344345566655431 12222221 222333
Q ss_pred HHhcCCcEEEEEeCCC
Q 003890 286 DYLTNKKYFIVLDDVF 301 (788)
Q Consensus 286 ~~l~~kr~LlVLDdvw 301 (788)
+.+...+-+|||||+.
T Consensus 489 e~~~~~PSiIvLDdld 504 (952)
T KOG0735|consen 489 EALWYAPSIIVLDDLD 504 (952)
T ss_pred HHHhhCCcEEEEcchh
Confidence 4456688999999995
No 283
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=95.30 E-value=1.9 Score=46.77 Aligned_cols=57 Identities=18% Similarity=0.099 Sum_probs=35.7
Q ss_pred CcEEEEEEcCCCChHHHHHHHHHcccCcccccce-eEEEEe-CCCCChHHHHHHHHHHcCCC
Q 003890 207 GLSVVAILNGSGFDKTAFAADTYNNNHIKFYFDC-LAWVRV-SIAYDSGKILDDIIKSVMPP 266 (788)
Q Consensus 207 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~-~~wv~v-s~~~~~~~~~~~il~~l~~~ 266 (788)
...||-.+|.-|.||||.|-.+.. ..+. ... +.-|+. -..+.+.+-++.+..+++.+
T Consensus 99 ~P~vImmvGLQGsGKTTt~~KLA~--~lkk-~~~kvllVaaD~~RpAA~eQL~~La~q~~v~ 157 (451)
T COG0541 99 PPTVILMVGLQGSGKTTTAGKLAK--YLKK-KGKKVLLVAADTYRPAAIEQLKQLAEQVGVP 157 (451)
T ss_pred CCeEEEEEeccCCChHhHHHHHHH--HHHH-cCCceEEEecccCChHHHHHHHHHHHHcCCc
Confidence 478999999999999999877776 3444 333 333322 22334445556666666544
No 284
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=95.29 E-value=0.039 Score=58.19 Aligned_cols=89 Identities=15% Similarity=0.051 Sum_probs=56.1
Q ss_pred CCcEEEEEEcCCCChHHHHHHHHHcccCcccccceeEEEEeCCCCChHHHHHHHHHHcCCCCCC-cccccCCHHHHHHHH
Q 003890 206 SGLSVVAILNGSGFDKTAFAADTYNNNHIKFYFDCLAWVRVSIAYDSGKILDDIIKSVMPPSRV-SVIIGEDYKLKKTIL 284 (788)
Q Consensus 206 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~~l~~~~~~-~~~~~~~~~~~~~~l 284 (788)
+.-+++-|+|.+|+||||||.++... ....=..++|++..+.++.. .++.++..... ...+..+.++....+
T Consensus 53 p~G~iteI~G~~GsGKTtLaL~~~~~--~~~~g~~v~yId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~~~ 125 (321)
T TIGR02012 53 PRGRIIEIYGPESSGKTTLALHAIAE--AQKAGGTAAFIDAEHALDPV-----YARKLGVDIDNLLVSQPDTGEQALEIA 125 (321)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEEcccchhHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHH
Confidence 34679999999999999999887763 33333447888776666653 34444432111 001233456666666
Q ss_pred HHHhc-CCcEEEEEeCCC
Q 003890 285 RDYLT-NKKYFIVLDDVF 301 (788)
Q Consensus 285 ~~~l~-~kr~LlVLDdvw 301 (788)
...++ +.--++|+|-|-
T Consensus 126 ~~li~~~~~~lIVIDSv~ 143 (321)
T TIGR02012 126 ETLVRSGAVDIIVVDSVA 143 (321)
T ss_pred HHHhhccCCcEEEEcchh
Confidence 66554 456699999884
No 285
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=95.28 E-value=0.099 Score=56.05 Aligned_cols=102 Identities=15% Similarity=0.140 Sum_probs=56.5
Q ss_pred CcEEEEEEcCCCChHHH-HHHHHHcccCcccccceeEEEEeCC-CCChHHHHHHHHHHcCCCCCCcccccCCHHHHHHHH
Q 003890 207 GLSVVAILNGSGFDKTA-FAADTYNNNHIKFYFDCLAWVRVSI-AYDSGKILDDIIKSVMPPSRVSVIIGEDYKLKKTIL 284 (788)
Q Consensus 207 ~~~vi~I~G~gGiGKTt-La~~v~~~~~~~~~F~~~~wv~vs~-~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~l 284 (788)
+-++|++||+.|+|||| ||+..+.-....++ ..+..|+... .-.+.+=++.-.+-++.+.. ...+..++...+
T Consensus 202 ~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~-~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~----vv~~~~el~~ai 276 (407)
T COG1419 202 QKRVIALVGPTGVGKTTTLAKLAARYVMLKKK-KKVAIITTDTYRIGAVEQLKTYADIMGVPLE----VVYSPKELAEAI 276 (407)
T ss_pred cCcEEEEECCCCCcHHHHHHHHHHHHHhhccC-cceEEEEeccchhhHHHHHHHHHHHhCCceE----EecCHHHHHHHH
Confidence 37899999999999998 67766652111222 2366665432 22334444444555555544 556667776665
Q ss_pred HHHhcCCcEEEEEeCCCC---ChhhHHHHhhhcC
Q 003890 285 RDYLTNKKYFIVLDDVFN---DSDIWDDLEQVLP 315 (788)
Q Consensus 285 ~~~l~~kr~LlVLDdvw~---~~~~~~~l~~~l~ 315 (788)
... ++.. +|..|=+.. +....+.+...+.
T Consensus 277 ~~l-~~~d-~ILVDTaGrs~~D~~~i~el~~~~~ 308 (407)
T COG1419 277 EAL-RDCD-VILVDTAGRSQYDKEKIEELKELID 308 (407)
T ss_pred HHh-hcCC-EEEEeCCCCCccCHHHHHHHHHHHh
Confidence 543 3443 455576642 2334444444444
No 286
>PRK13695 putative NTPase; Provisional
Probab=95.27 E-value=0.027 Score=54.43 Aligned_cols=22 Identities=18% Similarity=0.205 Sum_probs=19.7
Q ss_pred EEEEEcCCCChHHHHHHHHHcc
Q 003890 210 VVAILNGSGFDKTAFAADTYNN 231 (788)
Q Consensus 210 vi~I~G~gGiGKTtLa~~v~~~ 231 (788)
.|+|+|.+|+|||||++.+++.
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~ 23 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAEL 23 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999998874
No 287
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=95.26 E-value=0.048 Score=58.41 Aligned_cols=46 Identities=13% Similarity=-0.011 Sum_probs=37.9
Q ss_pred CCcccchhcHHHHHHHHhcCCCCcEEEEEEcCCCChHHHHHHHHHc
Q 003890 185 LDISEFERGREELFDLLIEGPSGLSVVAILNGSGFDKTAFAADTYN 230 (788)
Q Consensus 185 ~~~vGr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 230 (788)
..++|....+.++.+.+..-...-.-|-|+|..|+||+++|+.++.
T Consensus 6 ~~liG~S~~~~~~~~~i~~~a~~~~pVlI~GE~GtGK~~lA~~iH~ 51 (326)
T PRK11608 6 DNLLGEANSFLEVLEQVSRLAPLDKPVLIIGERGTGKELIASRLHY 51 (326)
T ss_pred CccEECCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHH
Confidence 5689999999999888865433345677999999999999999986
No 288
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=95.25 E-value=0.058 Score=59.02 Aligned_cols=90 Identities=13% Similarity=0.149 Sum_probs=53.4
Q ss_pred cEEEEEEcCCCChHHHHHHHHHcccCcccccceeEEEEeCCCCC-hHHHHHHHHHHcCCCCCCcc--cccCC------HH
Q 003890 208 LSVVAILNGSGFDKTAFAADTYNNNHIKFYFDCLAWVRVSIAYD-SGKILDDIIKSVMPPSRVSV--IIGED------YK 278 (788)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~-~~~~~~~il~~l~~~~~~~~--~~~~~------~~ 278 (788)
-..++|+|..|+|||||++.+... .. .+.++.+-+++... +.++..+++..-......-. ..+.. .-
T Consensus 162 GqrigI~G~sG~GKSTLL~~I~~~--~~--~dv~Vi~lIGER~rEv~efi~~~l~~~~l~rtvvv~atsd~p~~~R~~a~ 237 (444)
T PRK08972 162 GQRMGLFAGSGVGKSVLLGMMTRG--TT--ADVIVVGLVGERGREVKEFIEEILGEEGRARSVVVAAPADTSPLMRLKGC 237 (444)
T ss_pred CCEEEEECCCCCChhHHHHHhccC--CC--CCEEEEEEEcCChHHHHHHHHHhhccCCcccEEEEEECCCCCHHHHHHHH
Confidence 467999999999999999999873 21 24566677777654 45566655443221111000 00111 11
Q ss_pred HHHHHHHHHh--cCCcEEEEEeCCC
Q 003890 279 LKKTILRDYL--TNKKYFIVLDDVF 301 (788)
Q Consensus 279 ~~~~~l~~~l--~~kr~LlVLDdvw 301 (788)
..+-.+.+++ +|+++|+++||+-
T Consensus 238 ~~A~tiAEyfrd~G~~VLl~~DslT 262 (444)
T PRK08972 238 ETATTIAEYFRDQGLNVLLLMDSLT 262 (444)
T ss_pred HHHHHHHHHHHHcCCCEEEEEcChH
Confidence 1122344555 6899999999995
No 289
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=95.24 E-value=0.2 Score=53.55 Aligned_cols=41 Identities=7% Similarity=0.163 Sum_probs=28.5
Q ss_pred CCcEEEEEeCCCC-ChhhHHHHhhhcCCCCCCcEEEEecCCh
Q 003890 290 NKKYFIVLDDVFN-DSDIWDDLEQVLPDNQNGSRVLITVTDL 330 (788)
Q Consensus 290 ~kr~LlVLDdvw~-~~~~~~~l~~~l~~~~~gskIivTTR~~ 330 (788)
+++-.+|+|++.. +....+.+...+.....++.+|+||.+.
T Consensus 105 ~~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~ 146 (328)
T PRK05707 105 GGRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQP 146 (328)
T ss_pred CCCeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECCh
Confidence 3444557799963 5677788888887665677777777764
No 290
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.24 E-value=0.084 Score=51.15 Aligned_cols=23 Identities=26% Similarity=0.238 Sum_probs=21.3
Q ss_pred cEEEEEEcCCCChHHHHHHHHHc
Q 003890 208 LSVVAILNGSGFDKTAFAADTYN 230 (788)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~ 230 (788)
-.+++|+|..|.|||||++.+..
T Consensus 26 G~~~~i~G~nGsGKSTLl~~l~G 48 (178)
T cd03229 26 GEIVALLGPSGSGKSTLLRCIAG 48 (178)
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 46899999999999999999986
No 291
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=95.23 E-value=0.065 Score=53.84 Aligned_cols=74 Identities=11% Similarity=-0.014 Sum_probs=40.2
Q ss_pred EEEEEcCCCChHHHHHHHHHcccCcccc-cc-eeEEEEeCCCCChHHHHHHHHHHcCCCCCCcccccCCHHHHHHHHHHH
Q 003890 210 VVAILNGSGFDKTAFAADTYNNNHIKFY-FD-CLAWVRVSIAYDSGKILDDIIKSVMPPSRVSVIIGEDYKLKKTILRDY 287 (788)
Q Consensus 210 vi~I~G~gGiGKTtLa~~v~~~~~~~~~-F~-~~~wv~vs~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~~ 287 (788)
+|||.|.+|+||||+|+.+.. .+... .. .+..++...-+.....+.... .+... ..+...+.+.+...+...
T Consensus 1 IigI~G~sGSGKTTla~~L~~--~l~~~~~~~~v~vi~~D~f~~~~~~~~~~~-~~~~~---g~p~~~d~~~l~~~L~~l 74 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQA--LLSRWPDHPNVELITTDGFLYPNKELIERG-LMDRK---GFPESYDMEALLKFLKDI 74 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHH--HHhhcCCCCcEEEEecCcccCcHHHHHHhh-hhhcC---CCcccCCHHHHHHHHHHH
Confidence 589999999999999999987 33210 11 244444443333332222211 11111 112455666666666666
Q ss_pred hc
Q 003890 288 LT 289 (788)
Q Consensus 288 l~ 289 (788)
-.
T Consensus 75 ~~ 76 (220)
T cd02025 75 KS 76 (220)
T ss_pred HC
Confidence 55
No 292
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=95.23 E-value=0.013 Score=53.26 Aligned_cols=21 Identities=24% Similarity=0.246 Sum_probs=19.4
Q ss_pred EEEEcCCCChHHHHHHHHHcc
Q 003890 211 VAILNGSGFDKTAFAADTYNN 231 (788)
Q Consensus 211 i~I~G~gGiGKTtLa~~v~~~ 231 (788)
|.|.|.+|+||||+|+.+...
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999999983
No 293
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=95.23 E-value=0.1 Score=57.49 Aligned_cols=93 Identities=13% Similarity=0.018 Sum_probs=48.3
Q ss_pred CcEEEEEEcCCCChHHHHHHHHHcccCcccccceeEEEEeCC-CCChHHHHHHHHHHcCCCCCCcccccCCHHHHHHHHH
Q 003890 207 GLSVVAILNGSGFDKTAFAADTYNNNHIKFYFDCLAWVRVSI-AYDSGKILDDIIKSVMPPSRVSVIIGEDYKLKKTILR 285 (788)
Q Consensus 207 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~-~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~l~ 285 (788)
...++.++|.+|+||||.|..++.....+..+ .++-|+... .+.+.+-++......+.+... .....+..++.....
T Consensus 98 ~p~vi~~vG~~GsGKTTtaakLA~~l~~~~g~-kV~lV~~D~~R~~a~~QL~~~a~~~gvp~~~-~~~~~~P~~i~~~al 175 (428)
T TIGR00959 98 PPTVILMVGLQGSGKTTTCGKLAYYLKKKQGK-KVLLVACDLYRPAAIEQLKVLGQQVGVPVFA-LGKGQSPVEIARRAL 175 (428)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHhCCC-eEEEEeccccchHHHHHHHHHHHhcCCceEe-cCCCCCHHHHHHHHH
Confidence 36799999999999999987777621111122 233343321 222333344445554443221 112234444544444
Q ss_pred HHhcCCcE-EEEEeCCC
Q 003890 286 DYLTNKKY-FIVLDDVF 301 (788)
Q Consensus 286 ~~l~~kr~-LlVLDdvw 301 (788)
+....+.+ ++|+|-.-
T Consensus 176 ~~~~~~~~DvVIIDTaG 192 (428)
T TIGR00959 176 EYAKENGFDVVIVDTAG 192 (428)
T ss_pred HHHHhcCCCEEEEeCCC
Confidence 44444445 77778764
No 294
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=95.22 E-value=0.034 Score=58.87 Aligned_cols=26 Identities=15% Similarity=0.198 Sum_probs=23.6
Q ss_pred CCcEEEEEEcCCCChHHHHHHHHHcc
Q 003890 206 SGLSVVAILNGSGFDKTAFAADTYNN 231 (788)
Q Consensus 206 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 231 (788)
.....++|+|++|.|||.+|+.+++.
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~e 171 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFKK 171 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHH
Confidence 35789999999999999999999994
No 295
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=95.21 E-value=0.056 Score=59.31 Aligned_cols=90 Identities=18% Similarity=0.159 Sum_probs=52.8
Q ss_pred cEEEEEEcCCCChHHHHHHHHHcccCcccccceeEEEEeCCCCC-hHHHHHHHHHHcCCCCCCcc--cccCC-H-----H
Q 003890 208 LSVVAILNGSGFDKTAFAADTYNNNHIKFYFDCLAWVRVSIAYD-SGKILDDIIKSVMPPSRVSV--IIGED-Y-----K 278 (788)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~-~~~~~~~il~~l~~~~~~~~--~~~~~-~-----~ 278 (788)
-..++|+|..|+|||||++.++.... -+.++++-+++... +.++..+.+..-+.....-. ..+.. . -
T Consensus 158 Gqri~I~G~sG~GKTtLL~~I~~~~~----~d~~v~~~iGER~rEv~ef~~~~l~~~~l~rsvvv~atsd~~~~~r~~a~ 233 (442)
T PRK08927 158 GQRMGIFAGSGVGKSVLLSMLARNAD----ADVSVIGLIGERGREVQEFLQDDLGPEGLARSVVVVATSDEPALMRRQAA 233 (442)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhccC----CCEEEEEEEecCcHHHHHHHHHHhhccCceeEEEEEECCCCCHHHHHHHH
Confidence 46889999999999999999997422 13455676777654 44555444443221110000 00111 1 1
Q ss_pred HHHHHHHHHh--cCCcEEEEEeCCC
Q 003890 279 LKKTILRDYL--TNKKYFIVLDDVF 301 (788)
Q Consensus 279 ~~~~~l~~~l--~~kr~LlVLDdvw 301 (788)
...-.+.+++ +|+++|+++||+-
T Consensus 234 ~~a~tiAEyfrd~G~~Vll~~DslT 258 (442)
T PRK08927 234 YLTLAIAEYFRDQGKDVLCLMDSVT 258 (442)
T ss_pred HHHHHHHHHHHHCCCcEEEEEeCcH
Confidence 1122344555 5899999999995
No 296
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=95.18 E-value=0.025 Score=55.09 Aligned_cols=54 Identities=20% Similarity=0.006 Sum_probs=41.9
Q ss_pred ccccCCCCCCCCcccchhcHHHHHHHHhcCCCCcEEEEEEcCCCChHHHHHHHHHc
Q 003890 175 IRLLSEGQPRLDISEFERGREELFDLLIEGPSGLSVVAILNGSGFDKTAFAADTYN 230 (788)
Q Consensus 175 ~~~~~~~~~~~~~vGr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 230 (788)
|.....|+-+.++||-++.++.+.-+-.+++ .+-+.|-||+|+||||-+..+..
T Consensus 17 wVeKYrP~~l~dIVGNe~tv~rl~via~~gn--mP~liisGpPG~GKTTsi~~LAr 70 (333)
T KOG0991|consen 17 WVEKYRPSVLQDIVGNEDTVERLSVIAKEGN--MPNLIISGPPGTGKTTSILCLAR 70 (333)
T ss_pred HHHhhCchHHHHhhCCHHHHHHHHHHHHcCC--CCceEeeCCCCCchhhHHHHHHH
Confidence 4444444444889999999998877776665 88888999999999997777666
No 297
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=95.15 E-value=0.12 Score=55.19 Aligned_cols=102 Identities=9% Similarity=0.078 Sum_probs=61.0
Q ss_pred HHHhcCCCCcEEEEEEcCCCChHHHHHHHHHcccCccc----ccceeEEEEeCCCCChHHHHHHHHHHcCCCCCC--c--
Q 003890 199 DLLIEGPSGLSVVAILNGSGFDKTAFAADTYNNNHIKF----YFDCLAWVRVSIAYDSGKILDDIIKSVMPPSRV--S-- 270 (788)
Q Consensus 199 ~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~----~F~~~~wv~vs~~~~~~~~~~~il~~l~~~~~~--~-- 270 (788)
+.|..+=..-.++-|+|.+|+|||+|+..++-...... .=..++|++....|.++++. +|++.++..... +
T Consensus 114 ~lL~GG~~~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl~-qia~~~~~~~~~~l~~i 192 (342)
T PLN03186 114 KILEGGIETGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRLI-QIAERFGLNGADVLENV 192 (342)
T ss_pred HhhcCCCcCceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHHH-HHHHHcCCChhhhccce
Confidence 33433324467888999999999999988775322211 11259999999999888765 556665443211 0
Q ss_pred -ccccCCHHHHHHHHH---HHh-cCCcEEEEEeCCC
Q 003890 271 -VIIGEDYKLKKTILR---DYL-TNKKYFIVLDDVF 301 (788)
Q Consensus 271 -~~~~~~~~~~~~~l~---~~l-~~kr~LlVLDdvw 301 (788)
.....+.++....+. ..+ ..+--|||+|-+-
T Consensus 193 ~~~~~~~~e~~~~ll~~~~~~~~~~~~~LIVIDSI~ 228 (342)
T PLN03186 193 AYARAYNTDHQSELLLEAASMMAETRFALMIVDSAT 228 (342)
T ss_pred EEEecCCHHHHHHHHHHHHHHhhccCCCEEEEeCcH
Confidence 012234444443333 223 3345588899874
No 298
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.15 E-value=0.22 Score=54.20 Aligned_cols=104 Identities=13% Similarity=0.057 Sum_probs=57.9
Q ss_pred CcEEEEEEcCCCChHHHHHHHHHcccCcc--cccceeEEEEeCCC-CChHHHHHHHHHHcCCCCCCcccccCCHHHHHHH
Q 003890 207 GLSVVAILNGSGFDKTAFAADTYNNNHIK--FYFDCLAWVRVSIA-YDSGKILDDIIKSVMPPSRVSVIIGEDYKLKKTI 283 (788)
Q Consensus 207 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~--~~F~~~~wv~vs~~-~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~ 283 (788)
..++|.++|..|+||||.+..+....... .+=..+..+++... .....-++...+.++.+.. ...+.+.+...
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~----~~~~~~~l~~~ 248 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVK----AIESFKDLKEE 248 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceE----eeCcHHHHHHH
Confidence 36799999999999999988877632211 11123555554431 2233335555555554432 33344555555
Q ss_pred HHHHhcCCcEEEEEeCCCCC---hhhHHHHhhhcCC
Q 003890 284 LRDYLTNKKYFIVLDDVFND---SDIWDDLEQVLPD 316 (788)
Q Consensus 284 l~~~l~~kr~LlVLDdvw~~---~~~~~~l~~~l~~ 316 (788)
+.+. .+.=++++|..-.. ...+.++...+..
T Consensus 249 L~~~--~~~DlVLIDTaGr~~~~~~~l~el~~~l~~ 282 (388)
T PRK12723 249 ITQS--KDFDLVLVDTIGKSPKDFMKLAEMKELLNA 282 (388)
T ss_pred HHHh--CCCCEEEEcCCCCCccCHHHHHHHHHHHHh
Confidence 5543 34568888988522 2234555555543
No 299
>PRK06547 hypothetical protein; Provisional
Probab=95.12 E-value=0.03 Score=53.82 Aligned_cols=25 Identities=32% Similarity=0.304 Sum_probs=22.8
Q ss_pred CcEEEEEEcCCCChHHHHHHHHHcc
Q 003890 207 GLSVVAILNGSGFDKTAFAADTYNN 231 (788)
Q Consensus 207 ~~~vi~I~G~gGiGKTtLa~~v~~~ 231 (788)
...+|+|.|.+|+||||+|+.+.+.
T Consensus 14 ~~~~i~i~G~~GsGKTt~a~~l~~~ 38 (172)
T PRK06547 14 GMITVLIDGRSGSGKTTLAGALAAR 38 (172)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 4889999999999999999999873
No 300
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=95.11 E-value=0.23 Score=55.04 Aligned_cols=91 Identities=13% Similarity=-0.051 Sum_probs=50.6
Q ss_pred CcEEEEEEcCCCChHHHHHHHHHcccCcccccceeEEEEeCC-CCChHHHHHHHHHHcCCCCCCcccccCCHHHHHHHHH
Q 003890 207 GLSVVAILNGSGFDKTAFAADTYNNNHIKFYFDCLAWVRVSI-AYDSGKILDDIIKSVMPPSRVSVIIGEDYKLKKTILR 285 (788)
Q Consensus 207 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~-~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~l~ 285 (788)
...+|.++|.+|+||||+|..++.. ....-..++-|+... .+.+.+-++.+..+++.+... .....+.........
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~--L~~~g~kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~-~~~~~d~~~i~~~al 170 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARY--FKKKGLKVGLVAADTYRPAAYDQLKQLAEKIGVPFYG-DPDNKDAVEIAKEGL 170 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH--HHHcCCeEEEecCCCCCHHHHHHHHHHHHHcCCcEEe-cCCccCHHHHHHHHH
Confidence 4789999999999999999888873 332211344444322 223344566666666544321 001223333333333
Q ss_pred HHhcCCcEEEEEeCCC
Q 003890 286 DYLTNKKYFIVLDDVF 301 (788)
Q Consensus 286 ~~l~~kr~LlVLDdvw 301 (788)
+.+.+. =++|+|..-
T Consensus 171 ~~~~~~-DvVIIDTAG 185 (437)
T PRK00771 171 EKFKKA-DVIIVDTAG 185 (437)
T ss_pred HHhhcC-CEEEEECCC
Confidence 333444 578899884
No 301
>PRK13531 regulatory ATPase RavA; Provisional
Probab=95.09 E-value=0.045 Score=60.45 Aligned_cols=40 Identities=18% Similarity=0.118 Sum_probs=35.8
Q ss_pred cccchhcHHHHHHHHhcCCCCcEEEEEEcCCCChHHHHHHHHHc
Q 003890 187 ISEFERGREELFDLLIEGPSGLSVVAILNGSGFDKTAFAADTYN 230 (788)
Q Consensus 187 ~vGr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 230 (788)
++||++.++.+...+..+. -|-|.|.+|+|||++|+.+..
T Consensus 22 i~gre~vI~lll~aalag~----hVLL~GpPGTGKT~LAraLa~ 61 (498)
T PRK13531 22 LYERSHAIRLCLLAALSGE----SVFLLGPPGIAKSLIARRLKF 61 (498)
T ss_pred ccCcHHHHHHHHHHHccCC----CEEEECCCChhHHHHHHHHHH
Confidence 8999999999999887654 567899999999999999997
No 302
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=95.07 E-value=0.07 Score=54.65 Aligned_cols=104 Identities=15% Similarity=0.193 Sum_probs=60.2
Q ss_pred cEEEEEEcCCCChHHHHHHHHHcccCc--ccccceeEEEEeCCCCC-hHHHHHHHHHHcCCCCCCc---ccccCC-----
Q 003890 208 LSVVAILNGSGFDKTAFAADTYNNNHI--KFYFDCLAWVRVSIAYD-SGKILDDIIKSVMPPSRVS---VIIGED----- 276 (788)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~~~~~--~~~F~~~~wv~vs~~~~-~~~~~~~il~~l~~~~~~~---~~~~~~----- 276 (788)
-..++|.|-.|+|||+|+..+.++..+ +++-+.++++-+++... +.++..++...=......- ..+...
T Consensus 69 GQR~gIfgg~GvGKt~L~~~i~~~~~~~~~~~~~v~V~~~IGeR~rev~e~~~~~~~~~~l~~tv~v~~t~~~~~~~r~~ 148 (276)
T cd01135 69 GQKIPIFSGSGLPHNELAAQIARQAGVVGEEENFAVVFAAMGITMEDARFFKDDFEETGALERVVLFLNLANDPTIERII 148 (276)
T ss_pred CCEEEeecCCCCChhHHHHHHHHhhhccccCCCCEEEEEEeccccHHHHHHHHHhhhcCCcceEEEEEecCCCCHHHHHH
Confidence 357799999999999999988875331 12346688888888754 5666666555321111100 001111
Q ss_pred HHHHHHHHHHHh--c-CCcEEEEEeCCCCChhhHHHHh
Q 003890 277 YKLKKTILRDYL--T-NKKYFIVLDDVFNDSDIWDDLE 311 (788)
Q Consensus 277 ~~~~~~~l~~~l--~-~kr~LlVLDdvw~~~~~~~~l~ 311 (788)
.-.....+.+++ + ++++|+++||+-.......++.
T Consensus 149 a~~~a~aiAEyfrd~~g~~VLl~~D~ltr~A~A~rEis 186 (276)
T cd01135 149 TPRMALTTAEYLAYEKGKHVLVILTDMTNYAEALREIS 186 (276)
T ss_pred HHHHHHHHHHHHHhccCCeEEEEEcChhHHHHHHHHHH
Confidence 111122355555 3 7899999999962223334443
No 303
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=95.05 E-value=0.058 Score=56.36 Aligned_cols=135 Identities=17% Similarity=0.233 Sum_probs=73.1
Q ss_pred Cccc---chhcHHHHHHHHhcCCCCcEEEEEEcCCCChHHHHHHHHHcc-cCcccccceeEEE----EeCCCCC------
Q 003890 186 DISE---FERGREELFDLLIEGPSGLSVVAILNGSGFDKTAFAADTYNN-NHIKFYFDCLAWV----RVSIAYD------ 251 (788)
Q Consensus 186 ~~vG---r~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~-~~~~~~F~~~~wv----~vs~~~~------ 251 (788)
+++| |..+-.--+++|++++ +..|.+.|.+|.|||-||-+..=. ...++.|..++-. .++++..
T Consensus 222 ~vwGi~prn~eQ~~ALdlLld~d--I~lV~L~G~AGtGKTlLALaAgleqv~e~~~y~KiiVtRp~vpvG~dIGfLPG~e 299 (436)
T COG1875 222 EVWGIRPRNAEQRVALDLLLDDD--IDLVSLGGKAGTGKTLLALAAGLEQVLERKRYRKIIVTRPTVPVGEDIGFLPGTE 299 (436)
T ss_pred hhhccCcccHHHHHHHHHhcCCC--CCeEEeeccCCccHhHHHHHHHHHHHHHHhhhceEEEecCCcCcccccCcCCCch
Confidence 4555 6666666778888776 999999999999999987654321 1334555553322 2333211
Q ss_pred ---hHHHHHHHHHHcCCCCCCcccccCCHHHHHHHHH---------HHhcCC---cEEEEEeCCCC-ChhhHHHHhhhcC
Q 003890 252 ---SGKILDDIIKSVMPPSRVSVIIGEDYKLKKTILR---------DYLTNK---KYFIVLDDVFN-DSDIWDDLEQVLP 315 (788)
Q Consensus 252 ---~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~l~---------~~l~~k---r~LlVLDdvw~-~~~~~~~l~~~l~ 315 (788)
+.--.+.|.+.+..-... .......+...+. .+++|+ +-++|+|...+ .+.+ ++-.+.
T Consensus 300 EeKm~PWmq~i~DnLE~L~~~---~~~~~~~l~~~l~~~~iev~alt~IRGRSl~~~FiIIDEaQNLTphe---ikTilt 373 (436)
T COG1875 300 EEKMGPWMQAIFDNLEVLFSP---NEPGDRALEEILSRGRIEVEALTYIRGRSLPDSFIIIDEAQNLTPHE---LKTILT 373 (436)
T ss_pred hhhccchHHHHHhHHHHHhcc---cccchHHHHHHHhccceeeeeeeeecccccccceEEEehhhccCHHH---HHHHHH
Confidence 111222332222111110 1111122222211 233454 45999999974 3443 444455
Q ss_pred CCCCCcEEEEecC
Q 003890 316 DNQNGSRVLITVT 328 (788)
Q Consensus 316 ~~~~gskIivTTR 328 (788)
..++||||+.|--
T Consensus 374 R~G~GsKIVl~gd 386 (436)
T COG1875 374 RAGEGSKIVLTGD 386 (436)
T ss_pred hccCCCEEEEcCC
Confidence 6788999998854
No 304
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.05 E-value=0.065 Score=50.72 Aligned_cols=119 Identities=15% Similarity=0.120 Sum_probs=63.1
Q ss_pred cEEEEEEcCCCChHHHHHHHHHcccCcccccceeEEEEeCCCCChHHHHHHHHHHcCCCCCCcccccCCHHHHHHHHHHH
Q 003890 208 LSVVAILNGSGFDKTAFAADTYNNNHIKFYFDCLAWVRVSIAYDSGKILDDIIKSVMPPSRVSVIIGEDYKLKKTILRDY 287 (788)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~~ 287 (788)
-.+++|+|..|.|||||++.+... . ......+++......... .......+.... +-..-+...-.+...
T Consensus 25 g~~~~i~G~nGsGKStll~~l~g~--~-~~~~G~i~~~~~~~~~~~--~~~~~~~i~~~~-----qlS~G~~~r~~l~~~ 94 (157)
T cd00267 25 GEIVALVGPNGSGKSTLLRAIAGL--L-KPTSGEILIDGKDIAKLP--LEELRRRIGYVP-----QLSGGQRQRVALARA 94 (157)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC--C-CCCccEEEECCEEcccCC--HHHHHhceEEEe-----eCCHHHHHHHHHHHH
Confidence 368999999999999999999983 2 233444554321111100 011111111110 011123333345566
Q ss_pred hcCCcEEEEEeCCCC--ChhhHHHHhhhcCCC-CCCcEEEEecCChHHHhhc
Q 003890 288 LTNKKYFIVLDDVFN--DSDIWDDLEQVLPDN-QNGSRVLITVTDLDLLESL 336 (788)
Q Consensus 288 l~~kr~LlVLDdvw~--~~~~~~~l~~~l~~~-~~gskIivTTR~~~v~~~~ 336 (788)
+....-++++|+.-. +......+...+... ..+..|+++|.+.......
T Consensus 95 l~~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~ 146 (157)
T cd00267 95 LLLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAELA 146 (157)
T ss_pred HhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHh
Confidence 666778899998852 333333444333321 1256788888887666543
No 305
>PTZ00035 Rad51 protein; Provisional
Probab=95.02 E-value=0.15 Score=54.63 Aligned_cols=102 Identities=10% Similarity=0.069 Sum_probs=57.9
Q ss_pred HHHhcCCCCcEEEEEEcCCCChHHHHHHHHHcccCcc----cccceeEEEEeCCCCChHHHHHHHHHHcCCCCCC-----
Q 003890 199 DLLIEGPSGLSVVAILNGSGFDKTAFAADTYNNNHIK----FYFDCLAWVRVSIAYDSGKILDDIIKSVMPPSRV----- 269 (788)
Q Consensus 199 ~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~----~~F~~~~wv~vs~~~~~~~~~~~il~~l~~~~~~----- 269 (788)
++|..+=..-.++.|+|.+|+|||||+..++-..+.- ..=..++|++....++.+++. ++++.++.....
T Consensus 109 ~lLgGGi~~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~eri~-~ia~~~g~~~~~~l~nI 187 (337)
T PTZ00035 109 KLLGGGIETGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPERIV-QIAERFGLDPEDVLDNI 187 (337)
T ss_pred HHhCCCCCCCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCHHHHH-HHHHHhCCChHhHhhce
Confidence 3343332456899999999999999998887533321 111247799887777777643 445554432110
Q ss_pred cccccCCHHHHHHHHH---HHh-cCCcEEEEEeCCC
Q 003890 270 SVIIGEDYKLKKTILR---DYL-TNKKYFIVLDDVF 301 (788)
Q Consensus 270 ~~~~~~~~~~~~~~l~---~~l-~~kr~LlVLDdvw 301 (788)
......+.++....+. +.+ .++--|||+|-+.
T Consensus 188 ~~~~~~~~e~~~~~l~~~~~~l~~~~~~lvVIDSit 223 (337)
T PTZ00035 188 AYARAYNHEHQMQLLSQAAAKMAEERFALLIVDSAT 223 (337)
T ss_pred EEEccCCHHHHHHHHHHHHHHhhccCccEEEEECcH
Confidence 0012233344444332 233 2344588899885
No 306
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=95.02 E-value=0.82 Score=50.29 Aligned_cols=24 Identities=17% Similarity=0.109 Sum_probs=21.3
Q ss_pred CcEEEEEEcCCCChHHHHHHHHHc
Q 003890 207 GLSVVAILNGSGFDKTAFAADTYN 230 (788)
Q Consensus 207 ~~~vi~I~G~gGiGKTtLa~~v~~ 230 (788)
...+|.++|.+|+||||+|..+..
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~ 122 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAY 122 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 368999999999999999888775
No 307
>PRK05480 uridine/cytidine kinase; Provisional
Probab=95.02 E-value=0.02 Score=57.20 Aligned_cols=25 Identities=32% Similarity=0.485 Sum_probs=22.8
Q ss_pred CcEEEEEEcCCCChHHHHHHHHHcc
Q 003890 207 GLSVVAILNGSGFDKTAFAADTYNN 231 (788)
Q Consensus 207 ~~~vi~I~G~gGiGKTtLa~~v~~~ 231 (788)
+..+|+|.|.+|+||||||+.+...
T Consensus 5 ~~~iI~I~G~sGsGKTTl~~~l~~~ 29 (209)
T PRK05480 5 KPIIIGIAGGSGSGKTTVASTIYEE 29 (209)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 4679999999999999999999983
No 308
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=95.01 E-value=0.089 Score=51.85 Aligned_cols=107 Identities=10% Similarity=0.035 Sum_probs=51.1
Q ss_pred cEEEEEEcCCCChHHHHHHHHHcccCcccccceeEEEEeCCCCChHHHHHHHHHHcCCCCCCcccccCCHHHHHHHHHHH
Q 003890 208 LSVVAILNGSGFDKTAFAADTYNNNHIKFYFDCLAWVRVSIAYDSGKILDDIIKSVMPPSRVSVIIGEDYKLKKTILRDY 287 (788)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~~ 287 (788)
-++..|.|.+|.||||+++.+... ....=..++++. ........+.+. .+.... +...........
T Consensus 18 ~~~~~l~G~aGtGKT~~l~~~~~~--~~~~g~~v~~~a-pT~~Aa~~L~~~----~~~~a~-------Ti~~~l~~~~~~ 83 (196)
T PF13604_consen 18 DRVSVLQGPAGTGKTTLLKALAEA--LEAAGKRVIGLA-PTNKAAKELREK----TGIEAQ-------TIHSFLYRIPNG 83 (196)
T ss_dssp CSEEEEEESTTSTHHHHHHHHHHH--HHHTT--EEEEE-SSHHHHHHHHHH----HTS-EE-------EHHHHTTEECCE
T ss_pred CeEEEEEECCCCCHHHHHHHHHHH--HHhCCCeEEEEC-CcHHHHHHHHHh----hCcchh-------hHHHHHhcCCcc
Confidence 467888999999999999988763 222211233332 222122222222 221110 000000000000
Q ss_pred -h-----cCCcEEEEEeCCCC-ChhhHHHHhhhcCCCCCCcEEEEecCCh
Q 003890 288 -L-----TNKKYFIVLDDVFN-DSDIWDDLEQVLPDNQNGSRVLITVTDL 330 (788)
Q Consensus 288 -l-----~~kr~LlVLDdvw~-~~~~~~~l~~~l~~~~~gskIivTTR~~ 330 (788)
. ..++-+||+|+++- +...+..+....+. .|+|+|+.=-..
T Consensus 84 ~~~~~~~~~~~~vliVDEasmv~~~~~~~ll~~~~~--~~~klilvGD~~ 131 (196)
T PF13604_consen 84 DDEGRPELPKKDVLIVDEASMVDSRQLARLLRLAKK--SGAKLILVGDPN 131 (196)
T ss_dssp ECCSSCC-TSTSEEEESSGGG-BHHHHHHHHHHS-T---T-EEEEEE-TT
T ss_pred cccccccCCcccEEEEecccccCHHHHHHHHHHHHh--cCCEEEEECCcc
Confidence 0 13445999999962 34566666666554 467887664443
No 309
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=95.01 E-value=0.02 Score=57.13 Aligned_cols=24 Identities=33% Similarity=0.403 Sum_probs=22.2
Q ss_pred CcEEEEEEcCCCChHHHHHHHHHc
Q 003890 207 GLSVVAILNGSGFDKTAFAADTYN 230 (788)
Q Consensus 207 ~~~vi~I~G~gGiGKTtLa~~v~~ 230 (788)
...+|+|+|.+|+||||||+.+..
T Consensus 5 ~g~vi~I~G~sGsGKSTl~~~l~~ 28 (207)
T TIGR00235 5 KGIIIGIGGGSGSGKTTVARKIYE 28 (207)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999999987
No 310
>PRK10867 signal recognition particle protein; Provisional
Probab=94.97 E-value=0.13 Score=56.77 Aligned_cols=92 Identities=14% Similarity=0.043 Sum_probs=47.1
Q ss_pred CcEEEEEEcCCCChHHHHHHHHHcccCcccccce-eEEEEeCC-CCChHHHHHHHHHHcCCCCCCcccccCCHHHHHHHH
Q 003890 207 GLSVVAILNGSGFDKTAFAADTYNNNHIKFYFDC-LAWVRVSI-AYDSGKILDDIIKSVMPPSRVSVIIGEDYKLKKTIL 284 (788)
Q Consensus 207 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~-~~wv~vs~-~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~l 284 (788)
...+|.++|.+|+||||.|..+.. ........ ++.|+... .+...+-++...+..+.+... .....+...+....
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA~--~l~~~~G~kV~lV~~D~~R~aa~eQL~~~a~~~gv~v~~-~~~~~dp~~i~~~a 175 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLAK--YLKKKKKKKVLLVAADVYRPAAIEQLKTLGEQIGVPVFP-SGDGQDPVDIAKAA 175 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHH--HHHHhcCCcEEEEEccccchHHHHHHHHHHhhcCCeEEe-cCCCCCHHHHHHHH
Confidence 368999999999999998777665 23222122 34443321 122223344445554433210 00123445555444
Q ss_pred HHHhcCCcE-EEEEeCCC
Q 003890 285 RDYLTNKKY-FIVLDDVF 301 (788)
Q Consensus 285 ~~~l~~kr~-LlVLDdvw 301 (788)
.+..+.+.| ++|+|-.-
T Consensus 176 ~~~a~~~~~DvVIIDTaG 193 (433)
T PRK10867 176 LEEAKENGYDVVIVDTAG 193 (433)
T ss_pred HHHHHhcCCCEEEEeCCC
Confidence 444444444 67777664
No 311
>PRK09354 recA recombinase A; Provisional
Probab=94.93 E-value=0.1 Score=55.60 Aligned_cols=89 Identities=17% Similarity=0.055 Sum_probs=57.2
Q ss_pred CCcEEEEEEcCCCChHHHHHHHHHcccCcccccceeEEEEeCCCCChHHHHHHHHHHcCCCCCC-cccccCCHHHHHHHH
Q 003890 206 SGLSVVAILNGSGFDKTAFAADTYNNNHIKFYFDCLAWVRVSIAYDSGKILDDIIKSVMPPSRV-SVIIGEDYKLKKTIL 284 (788)
Q Consensus 206 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~~l~~~~~~-~~~~~~~~~~~~~~l 284 (788)
+.-+++-|+|.+|+||||||.+++.. ....=...+|++.-..++.. .++.++..... -..+..+.++....+
T Consensus 58 p~G~IteI~G~~GsGKTtLal~~~~~--~~~~G~~~~yId~E~s~~~~-----~a~~lGvdld~lli~qp~~~Eq~l~i~ 130 (349)
T PRK09354 58 PRGRIVEIYGPESSGKTTLALHAIAE--AQKAGGTAAFIDAEHALDPV-----YAKKLGVDIDNLLVSQPDTGEQALEIA 130 (349)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEECCccchHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHH
Confidence 44678899999999999999887763 33333458899887777753 34444432111 001233456666666
Q ss_pred HHHhc-CCcEEEEEeCCC
Q 003890 285 RDYLT-NKKYFIVLDDVF 301 (788)
Q Consensus 285 ~~~l~-~kr~LlVLDdvw 301 (788)
...++ ++--+||+|-|-
T Consensus 131 ~~li~s~~~~lIVIDSva 148 (349)
T PRK09354 131 DTLVRSGAVDLIVVDSVA 148 (349)
T ss_pred HHHhhcCCCCEEEEeChh
Confidence 66654 456699999884
No 312
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=94.92 E-value=0.075 Score=54.91 Aligned_cols=142 Identities=13% Similarity=0.110 Sum_probs=78.0
Q ss_pred CCcccchhcHHHHHHHHhcC--CCCcEEEEEEcCCCChHHHHHHHHHcc-cCcccccceeEEEEeCCCCChH-HHHHHHH
Q 003890 185 LDISEFERGREELFDLLIEG--PSGLSVVAILNGSGFDKTAFAADTYNN-NHIKFYFDCLAWVRVSIAYDSG-KILDDII 260 (788)
Q Consensus 185 ~~~vGr~~~~~~i~~~L~~~--~~~~~vi~I~G~gGiGKTtLa~~v~~~-~~~~~~F~~~~wv~vs~~~~~~-~~~~~il 260 (788)
..++|-.++..++-.++... .....-+.|+|+.|.|||+|...+..| .++.++ .+-|......-.+ -.++.|.
T Consensus 24 ~~l~g~~~~~~~l~~~lkqt~~~gEsnsviiigprgsgkT~li~~~Ls~~q~~~E~---~l~v~Lng~~~~dk~al~~I~ 100 (408)
T KOG2228|consen 24 INLFGVQDEQKHLSELLKQTILHGESNSVIIIGPRGSGKTILIDTRLSDIQENGEN---FLLVRLNGELQTDKIALKGIT 100 (408)
T ss_pred cceeehHHHHHHHHHHHHHHHHhcCCCceEEEccCCCCceEeeHHHHhhHHhcCCe---EEEEEECccchhhHHHHHHHH
Confidence 34889989988888888642 112456678999999999998888775 223333 3444444443322 2344555
Q ss_pred HHcCCCCCCcccccCCHHHHHHHHHHHhcC------CcEEEEEeCCCC--Chh----hHHHHhhhcCCCCCCcEEEEecC
Q 003890 261 KSVMPPSRVSVIIGEDYKLKKTILRDYLTN------KKYFIVLDDVFN--DSD----IWDDLEQVLPDNQNGSRVLITVT 328 (788)
Q Consensus 261 ~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~------kr~LlVLDdvw~--~~~----~~~~l~~~l~~~~~gskIivTTR 328 (788)
.++..+.........+..+....+-..|+. -++.+|+|...- ... -.+-+...-....|-|-|-+|||
T Consensus 101 rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~Ttr 180 (408)
T KOG2228|consen 101 RQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVTTR 180 (408)
T ss_pred HHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEeecc
Confidence 544322211111223333434444444432 368889987741 111 11112112223456788899999
Q ss_pred C
Q 003890 329 D 329 (788)
Q Consensus 329 ~ 329 (788)
-
T Consensus 181 l 181 (408)
T KOG2228|consen 181 L 181 (408)
T ss_pred c
Confidence 5
No 313
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=94.91 E-value=0.019 Score=45.80 Aligned_cols=22 Identities=32% Similarity=0.462 Sum_probs=19.9
Q ss_pred EEEEEcCCCChHHHHHHHHHcc
Q 003890 210 VVAILNGSGFDKTAFAADTYNN 231 (788)
Q Consensus 210 vi~I~G~gGiGKTtLa~~v~~~ 231 (788)
+|+|.|..|+||||+|+.+.+.
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999883
No 314
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=94.89 E-value=0.051 Score=54.30 Aligned_cols=124 Identities=10% Similarity=0.098 Sum_probs=59.2
Q ss_pred cEEEEEEcCCCChHHHHHHHHHcccCcccccceeEEEEeCCCCChHHHHHHHHHHcCCCCCCcccccCCHHHHHHHHHHH
Q 003890 208 LSVVAILNGSGFDKTAFAADTYNNNHIKFYFDCLAWVRVSIAYDSGKILDDIIKSVMPPSRVSVIIGEDYKLKKTILRDY 287 (788)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~~ 287 (788)
.+++.|+|..|.|||||.+.+...... .+-...+|.. ... .....++...+........ .......-...+...
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~~~~l-a~~G~~v~a~---~~~-~~~~d~i~~~l~~~~si~~-~~S~f~~el~~l~~~ 102 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVALIVFL-AHIGSFVPAD---SAT-IGLVDKIFTRMSSRESVSS-GQSAFMIDLYQVSKA 102 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHHHHHH-HhCCCeeEcC---CcE-EeeeeeeeeeeCCccChhh-ccchHHHHHHHHHHH
Confidence 488999999999999999998742111 0101111110 000 0011122222222111000 001111112222222
Q ss_pred h--cCCcEEEEEeCCCCC--hhhHH----HHhhhcCCC-CCCcEEEEecCChHHHhhcc
Q 003890 288 L--TNKKYFIVLDDVFND--SDIWD----DLEQVLPDN-QNGSRVLITVTDLDLLESLE 337 (788)
Q Consensus 288 l--~~kr~LlVLDdvw~~--~~~~~----~l~~~l~~~-~~gskIivTTR~~~v~~~~~ 337 (788)
+ ..++.|++||..-.. ..+.. .+...+... ..+..+|+||.+.+++....
T Consensus 103 l~~~~~~slvllDE~~~gtd~~~~~~~~~ail~~l~~~~~~~~~vli~TH~~~l~~~~~ 161 (213)
T cd03281 103 LRLATRRSLVLIDEFGKGTDTEDGAGLLIATIEHLLKRGPECPRVIVSTHFHELFNRSL 161 (213)
T ss_pred HHhCCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEcChHHHHHhhh
Confidence 2 467899999998632 22211 122223222 23468999999988887653
No 315
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=94.89 E-value=0.14 Score=49.73 Aligned_cols=24 Identities=21% Similarity=0.189 Sum_probs=21.7
Q ss_pred cEEEEEEcCCCChHHHHHHHHHcc
Q 003890 208 LSVVAILNGSGFDKTAFAADTYNN 231 (788)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~~ 231 (788)
-.+++|+|..|.|||||.+.+..-
T Consensus 26 G~~~~i~G~nGsGKSTLl~~l~G~ 49 (182)
T cd03215 26 GEIVGIAGLVGNGQTELAEALFGL 49 (182)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 458999999999999999999973
No 316
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=94.87 E-value=0.13 Score=52.09 Aligned_cols=126 Identities=19% Similarity=0.203 Sum_probs=69.7
Q ss_pred cEEEEEEcCCCChHHHHHHHHHcccC-----cc------ccc---ceeEEEEe----CCCC--Ch---------------
Q 003890 208 LSVVAILNGSGFDKTAFAADTYNNNH-----IK------FYF---DCLAWVRV----SIAY--DS--------------- 252 (788)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~~~~-----~~------~~F---~~~~wv~v----s~~~--~~--------------- 252 (788)
-.+++|+|+.|.|||||.+.+..-.+ +. ..+ ..+.||.= ...| .+
T Consensus 30 G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~ 109 (254)
T COG1121 30 GEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWF 109 (254)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEEcCcccccCCCCCcCHHHHHHccCccccccc
Confidence 36999999999999999999987211 10 011 12555421 1000 01
Q ss_pred -------HHHHHHHHHHcCCCCCC-cccccCCHHHH-HHHHHHHhcCCcEEEEEeCCCC-----ChhhHHHHhhhcCCCC
Q 003890 253 -------GKILDDIIKSVMPPSRV-SVIIGEDYKLK-KTILRDYLTNKKYFIVLDDVFN-----DSDIWDDLEQVLPDNQ 318 (788)
Q Consensus 253 -------~~~~~~il~~l~~~~~~-~~~~~~~~~~~-~~~l~~~l~~kr~LlVLDdvw~-----~~~~~~~l~~~l~~~~ 318 (788)
.+...+.++.++..... .....-+--+. .-.|.+.|..+.=|+|||.=-. ....+.++...+...
T Consensus 110 ~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~e- 188 (254)
T COG1121 110 RRLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQE- 188 (254)
T ss_pred ccccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHC-
Confidence 13344445544433211 11122222232 2356677888888999996541 234445555555443
Q ss_pred CCcEEEEecCChHHHhh
Q 003890 319 NGSRVLITVTDLDLLES 335 (788)
Q Consensus 319 ~gskIivTTR~~~v~~~ 335 (788)
|.-||++|-+-+....
T Consensus 189 -g~tIl~vtHDL~~v~~ 204 (254)
T COG1121 189 -GKTVLMVTHDLGLVMA 204 (254)
T ss_pred -CCEEEEEeCCcHHhHh
Confidence 8889999998665543
No 317
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=94.83 E-value=0.12 Score=57.84 Aligned_cols=137 Identities=18% Similarity=0.209 Sum_probs=74.4
Q ss_pred HHHHHHHHhcCCCCcEEEEEEcCCCChHHH-HHHHHHcccCcccccceeEEEEeCCCC--ChHHHHHHHHHHcCCCCCCc
Q 003890 194 REELFDLLIEGPSGLSVVAILNGSGFDKTA-FAADTYNNNHIKFYFDCLAWVRVSIAY--DSGKILDDIIKSVMPPSRVS 270 (788)
Q Consensus 194 ~~~i~~~L~~~~~~~~vi~I~G~gGiGKTt-La~~v~~~~~~~~~F~~~~wv~vs~~~--~~~~~~~~il~~l~~~~~~~ 270 (788)
++++++.+.+ ..||.|||..|.|||| |||.+|.+- |..--.|.+.|.- .+..+.+.+.+.++......
T Consensus 361 R~~ll~~ir~----n~vvvivgETGSGKTTQl~QyL~edG-----Y~~~GmIGcTQPRRvAAiSVAkrVa~EM~~~lG~~ 431 (1042)
T KOG0924|consen 361 RDQLLSVIRE----NQVVVIVGETGSGKTTQLAQYLYEDG-----YADNGMIGCTQPRRVAAISVAKRVAEEMGVTLGDT 431 (1042)
T ss_pred HHHHHHHHhh----CcEEEEEecCCCCchhhhHHHHHhcc-----cccCCeeeecCchHHHHHHHHHHHHHHhCCccccc
Confidence 4445555533 5799999999999999 899999852 2222345555543 34556677777664433220
Q ss_pred c------cccCCHHHH------HHHHHHHhcC----CcEEEEEeCCCCChhhHHHHhhhcC---CCCCCcEEEEecCChH
Q 003890 271 V------IIGEDYKLK------KTILRDYLTN----KKYFIVLDDVFNDSDIWDDLEQVLP---DNQNGSRVLITVTDLD 331 (788)
Q Consensus 271 ~------~~~~~~~~~------~~~l~~~l~~----kr~LlVLDdvw~~~~~~~~l~~~l~---~~~~gskIivTTR~~~ 331 (788)
. .+..+.+.. --.|++.|++ |=-.||+|...+....-+-+...+. .....-|+||||-.-+
T Consensus 432 VGYsIRFEdvT~~~T~IkymTDGiLLrEsL~d~~L~kYSviImDEAHERslNtDilfGllk~~larRrdlKliVtSATm~ 511 (1042)
T KOG0924|consen 432 VGYSIRFEDVTSEDTKIKYMTDGILLRESLKDRDLDKYSVIIMDEAHERSLNTDILFGLLKKVLARRRDLKLIVTSATMD 511 (1042)
T ss_pred cceEEEeeecCCCceeEEEeccchHHHHHhhhhhhhheeEEEechhhhcccchHHHHHHHHHHHHhhccceEEEeecccc
Confidence 0 011111111 1134445544 5558889998632222222222222 2234679999998644
Q ss_pred ---HHhhcccc
Q 003890 332 ---LLESLEME 339 (788)
Q Consensus 332 ---v~~~~~~~ 339 (788)
.+..++..
T Consensus 512 a~kf~nfFgn~ 522 (1042)
T KOG0924|consen 512 AQKFSNFFGNC 522 (1042)
T ss_pred HHHHHHHhCCC
Confidence 44455533
No 318
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=94.82 E-value=0.32 Score=47.95 Aligned_cols=20 Identities=20% Similarity=0.255 Sum_probs=18.9
Q ss_pred EEEEEcCCCChHHHHHHHHH
Q 003890 210 VVAILNGSGFDKTAFAADTY 229 (788)
Q Consensus 210 vi~I~G~gGiGKTtLa~~v~ 229 (788)
+++|+|..|+|||||++.++
T Consensus 24 ~~~i~G~nGsGKStll~al~ 43 (197)
T cd03278 24 LTAIVGPNGSGKSNIIDAIR 43 (197)
T ss_pred cEEEECCCCCCHHHHHHHHH
Confidence 88999999999999999876
No 319
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=94.81 E-value=0.18 Score=49.96 Aligned_cols=24 Identities=21% Similarity=0.264 Sum_probs=21.8
Q ss_pred cEEEEEEcCCCChHHHHHHHHHcc
Q 003890 208 LSVVAILNGSGFDKTAFAADTYNN 231 (788)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~~ 231 (788)
-.+++|+|..|.|||||.+.+...
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~ 49 (200)
T cd03217 26 GEVHALMGPNGSGKSTLAKTIMGH 49 (200)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 469999999999999999998874
No 320
>PRK00889 adenylylsulfate kinase; Provisional
Probab=94.81 E-value=0.19 Score=48.47 Aligned_cols=24 Identities=25% Similarity=0.054 Sum_probs=21.9
Q ss_pred cEEEEEEcCCCChHHHHHHHHHcc
Q 003890 208 LSVVAILNGSGFDKTAFAADTYNN 231 (788)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~~ 231 (788)
..+|.|+|.+|+||||+|+.+...
T Consensus 4 g~~i~~~G~~GsGKST~a~~la~~ 27 (175)
T PRK00889 4 GVTVWFTGLSGAGKTTIARALAEK 27 (175)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 569999999999999999999983
No 321
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.79 E-value=0.013 Score=34.99 Aligned_cols=14 Identities=36% Similarity=0.679 Sum_probs=5.1
Q ss_pred cEEEecCCCCcccC
Q 003890 574 KYLKLNIPSLKCLP 587 (788)
Q Consensus 574 ~~L~L~~~~i~~lp 587 (788)
++|++++|+++.+|
T Consensus 3 ~~Ldls~n~l~~ip 16 (22)
T PF00560_consen 3 EYLDLSGNNLTSIP 16 (22)
T ss_dssp SEEEETSSEESEEG
T ss_pred cEEECCCCcCEeCC
Confidence 33333333333333
No 322
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=94.79 E-value=0.27 Score=49.08 Aligned_cols=24 Identities=17% Similarity=0.171 Sum_probs=21.6
Q ss_pred cEEEEEEcCCCChHHHHHHHHHcc
Q 003890 208 LSVVAILNGSGFDKTAFAADTYNN 231 (788)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~~ 231 (788)
-.+++|+|..|.|||||++.+...
T Consensus 25 Ge~~~l~G~nGsGKSTLl~~l~G~ 48 (213)
T cd03235 25 GEFLAIVGPNGAGKSTLLKAILGL 48 (213)
T ss_pred CCEEEEECCCCCCHHHHHHHHcCC
Confidence 458999999999999999999874
No 323
>PRK08149 ATP synthase SpaL; Validated
Probab=94.78 E-value=0.089 Score=57.68 Aligned_cols=90 Identities=14% Similarity=0.141 Sum_probs=52.0
Q ss_pred cEEEEEEcCCCChHHHHHHHHHcccCcccccceeEEEEeCCCC-ChHHHHHHHHHHcCCCCCCcc---ccc-----CCHH
Q 003890 208 LSVVAILNGSGFDKTAFAADTYNNNHIKFYFDCLAWVRVSIAY-DSGKILDDIIKSVMPPSRVSV---IIG-----EDYK 278 (788)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~~~~~il~~l~~~~~~~~---~~~-----~~~~ 278 (788)
-..++|+|..|+|||||++.++..... +.++...+.... ++.++..+.+.........-. .+. ....
T Consensus 151 Gq~i~I~G~sG~GKTTLl~~i~~~~~~----dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~sd~p~~~r~~a~ 226 (428)
T PRK08149 151 GQRMGIFASAGCGKTSLMNMLIEHSEA----DVFVIGLIGERGREVTEFVESLRASSRREKCVLVYATSDFSSVDRCNAA 226 (428)
T ss_pred CCEEEEECCCCCChhHHHHHHhcCCCC----CeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEECCCCCHHHHHhHH
Confidence 458899999999999999999873221 233444454443 455666666654322111000 001 1111
Q ss_pred HHHHHHHHHh--cCCcEEEEEeCCC
Q 003890 279 LKKTILRDYL--TNKKYFIVLDDVF 301 (788)
Q Consensus 279 ~~~~~l~~~l--~~kr~LlVLDdvw 301 (788)
..+..+.+++ +||++||++||+-
T Consensus 227 ~~a~tiAE~fr~~G~~Vll~~DslT 251 (428)
T PRK08149 227 LVATTVAEYFRDQGKRVVLFIDSMT 251 (428)
T ss_pred HHHHHHHHHHHHcCCCEEEEccchH
Confidence 2233344444 5899999999995
No 324
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=94.78 E-value=0.12 Score=53.95 Aligned_cols=80 Identities=10% Similarity=0.011 Sum_probs=46.2
Q ss_pred CcEEEEEEcCCCChHHHHHHHHHcccCcccccc--eeEEEEeCCCCChHHHHHHHHHHcCCCCCCcccccCCHHHHHHHH
Q 003890 207 GLSVVAILNGSGFDKTAFAADTYNNNHIKFYFD--CLAWVRVSIAYDSGKILDDIIKSVMPPSRVSVIIGEDYKLKKTIL 284 (788)
Q Consensus 207 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~--~~~wv~vs~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~l 284 (788)
...+|||.|..|+||||+|+.+.. ....... .+..++...-+....... ..+.......+...+.+.+...+
T Consensus 61 ~p~IIGIaG~~GSGKSTlar~L~~--ll~~~~~~g~V~vi~~D~f~~~~~~l~----~~g~~~~~g~P~s~D~~~l~~~L 134 (290)
T TIGR00554 61 IPYIISIAGSVAVGKSTTARILQA--LLSRWPEHRKVELITTDGFLHPNQVLK----ERNLMKKKGFPESYDMHRLVKFL 134 (290)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH--HHhhcCCCCceEEEecccccccHHHHH----HcCCccccCCChhccHHHHHHHH
Confidence 478999999999999999987765 2221111 244444433333233222 22221111234667777787777
Q ss_pred HHHhcCCc
Q 003890 285 RDYLTNKK 292 (788)
Q Consensus 285 ~~~l~~kr 292 (788)
...-.|+.
T Consensus 135 ~~Lk~g~~ 142 (290)
T TIGR00554 135 SDLKSGKP 142 (290)
T ss_pred HHHHCCCC
Confidence 77766653
No 325
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=94.77 E-value=0.13 Score=56.38 Aligned_cols=50 Identities=18% Similarity=0.179 Sum_probs=39.0
Q ss_pred CCCcccchhc---HHHHHHHHhcCC-------CCcEEEEEEcCCCChHHHHHHHHHcccC
Q 003890 184 RLDISEFERG---REELFDLLIEGP-------SGLSVVAILNGSGFDKTAFAADTYNNNH 233 (788)
Q Consensus 184 ~~~~vGr~~~---~~~i~~~L~~~~-------~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 233 (788)
|.++.|-|+. +++|+++|.++. .=.+=|-++|++|.|||-||++|.-...
T Consensus 303 F~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~ 362 (752)
T KOG0734|consen 303 FEDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAG 362 (752)
T ss_pred cccccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccC
Confidence 4788898765 567888887753 2256678999999999999999998543
No 326
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=94.77 E-value=0.078 Score=51.17 Aligned_cols=96 Identities=15% Similarity=0.104 Sum_probs=48.9
Q ss_pred EEEEEcCCCChHHHHHHHHHcccCcccccce--eEEEEeCCCCChHHHHHHHHHHcCCCCCCcccccCCHHHHHHHHHHH
Q 003890 210 VVAILNGSGFDKTAFAADTYNNNHIKFYFDC--LAWVRVSIAYDSGKILDDIIKSVMPPSRVSVIIGEDYKLKKTILRDY 287 (788)
Q Consensus 210 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~--~~wv~vs~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~~ 287 (788)
.|.|.|.+|+||||+|+.+.+... --|.+. ..|-.+........-.+.++.+-. -.+.+-....+.++
T Consensus 2 riiilG~pGaGK~T~A~~La~~~~-i~hlstgd~~r~~~~~~t~lg~~~k~~i~~g~---------lv~d~i~~~~v~~r 71 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKLG-LPHLDTGDILRAAIAERTELGEEIKKYIDKGE---------LVPDEIVNGLVKER 71 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC-CcEEcHhHHhHhhhccCChHHHHHHHHHHcCC---------ccchHHHHHHHHHH
Confidence 478999999999999999998411 122331 222222222222222222222211 11222333444444
Q ss_pred hc--CCcEEEEEeCCCCChhhHHHHhhhcC
Q 003890 288 LT--NKKYFIVLDDVFNDSDIWDDLEQVLP 315 (788)
Q Consensus 288 l~--~kr~LlVLDdvw~~~~~~~~l~~~l~ 315 (788)
+. +.+.-+|+|+.-....++..+...+.
T Consensus 72 l~~~d~~~~~I~dg~PR~~~qa~~l~r~l~ 101 (178)
T COG0563 72 LDEADCKAGFILDGFPRTLCQARALKRLLK 101 (178)
T ss_pred HHhhcccCeEEEeCCCCcHHHHHHHHHHHH
Confidence 43 22228899998634455566655544
No 327
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=94.77 E-value=0.15 Score=51.70 Aligned_cols=23 Identities=17% Similarity=0.153 Sum_probs=21.6
Q ss_pred cEEEEEEcCCCChHHHHHHHHHc
Q 003890 208 LSVVAILNGSGFDKTAFAADTYN 230 (788)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~ 230 (788)
-.+++|+|+.|+|||||.+.++.
T Consensus 28 G~i~~iiGpNG~GKSTLLk~l~g 50 (258)
T COG1120 28 GEITGILGPNGSGKSTLLKCLAG 50 (258)
T ss_pred CcEEEEECCCCCCHHHHHHHHhc
Confidence 57999999999999999999987
No 328
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.76 E-value=0.075 Score=57.78 Aligned_cols=23 Identities=26% Similarity=0.164 Sum_probs=20.9
Q ss_pred cEEEEEEcCCCChHHHHHHHHHc
Q 003890 208 LSVVAILNGSGFDKTAFAADTYN 230 (788)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~ 230 (788)
..++.++|.+|+||||++..+..
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~ 245 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAA 245 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 57899999999999999988876
No 329
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=94.76 E-value=0.24 Score=46.40 Aligned_cols=21 Identities=24% Similarity=0.180 Sum_probs=19.4
Q ss_pred EEEEEcCCCChHHHHHHHHHc
Q 003890 210 VVAILNGSGFDKTAFAADTYN 230 (788)
Q Consensus 210 vi~I~G~gGiGKTtLa~~v~~ 230 (788)
||.|+|.+|+||||+|+.+..
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~ 21 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEE 21 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHH
Confidence 578999999999999999887
No 330
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=94.74 E-value=0.057 Score=52.32 Aligned_cols=21 Identities=48% Similarity=0.499 Sum_probs=19.8
Q ss_pred EEEEEcCCCChHHHHHHHHHc
Q 003890 210 VVAILNGSGFDKTAFAADTYN 230 (788)
Q Consensus 210 vi~I~G~gGiGKTtLa~~v~~ 230 (788)
+|+|.|.+|+||||||+.+..
T Consensus 1 ii~i~G~sgsGKttla~~l~~ 21 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSN 21 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999987
No 331
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.74 E-value=0.014 Score=34.80 Aligned_cols=22 Identities=32% Similarity=0.561 Sum_probs=18.6
Q ss_pred cccEEEecCCCCCCCCccccCC
Q 003890 549 HLRILNLGSAVLVQFPPGLENL 570 (788)
Q Consensus 549 ~L~~L~L~~~~l~~lp~~i~~L 570 (788)
+|++|||++|.++.+|.+|++|
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~l 22 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSNL 22 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT-
T ss_pred CccEEECCCCcCEeCChhhcCC
Confidence 5899999999999999887654
No 332
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=94.72 E-value=0.1 Score=54.06 Aligned_cols=90 Identities=13% Similarity=0.106 Sum_probs=48.1
Q ss_pred CCcEEEEEEcCCCChHHHHHHHHHcccCcccccceeEEEEeCCCCChHHHHHHHHHHcCCCCCCc---ccccCCHHHHHH
Q 003890 206 SGLSVVAILNGSGFDKTAFAADTYNNNHIKFYFDCLAWVRVSIAYDSGKILDDIIKSVMPPSRVS---VIIGEDYKLKKT 282 (788)
Q Consensus 206 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~~l~~~~~~~---~~~~~~~~~~~~ 282 (788)
.+..+|.|+|.+|+|||||...+.+ .....+.. +.+ .....+..+ .+.+...+.+..+. ..-..+...+..
T Consensus 102 ~~~~~v~l~G~pGsGKTTLl~~l~~--~l~~~~~~-~VI-~gD~~t~~D--a~rI~~~g~pvvqi~tG~~Chl~a~mv~~ 175 (290)
T PRK10463 102 RKQLVLNLVSSPGSGKTTLLTETLM--RLKDSVPC-AVI-EGDQQTVND--AARIRATGTPAIQVNTGKGCHLDAQMIAD 175 (290)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHH--HhccCCCE-EEE-CCCcCcHHH--HHHHHhcCCcEEEecCCCCCcCcHHHHHH
Confidence 3589999999999999999999988 44443332 222 111112111 11233332221100 001223344555
Q ss_pred HHHHHhcCCcEEEEEeCCC
Q 003890 283 ILRDYLTNKKYFIVLDDVF 301 (788)
Q Consensus 283 ~l~~~l~~kr~LlVLDdvw 301 (788)
.+...-...-=++|+++|-
T Consensus 176 Al~~L~~~~~d~liIEnvG 194 (290)
T PRK10463 176 AAPRLPLDDNGILFIENVG 194 (290)
T ss_pred HHHHHhhcCCcEEEEECCC
Confidence 5555444445678899996
No 333
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=94.71 E-value=0.41 Score=47.56 Aligned_cols=23 Identities=13% Similarity=0.261 Sum_probs=21.0
Q ss_pred cEEEEEEcCCCChHHHHHHHHHc
Q 003890 208 LSVVAILNGSGFDKTAFAADTYN 230 (788)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~ 230 (788)
-.+++|+|..|.|||||++.+..
T Consensus 34 G~~~~i~G~nGsGKSTLl~~l~G 56 (207)
T cd03369 34 GEKIGIVGRTGAGKSTLILALFR 56 (207)
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 46899999999999999999976
No 334
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=94.71 E-value=0.3 Score=49.09 Aligned_cols=24 Identities=17% Similarity=0.116 Sum_probs=21.6
Q ss_pred cEEEEEEcCCCChHHHHHHHHHcc
Q 003890 208 LSVVAILNGSGFDKTAFAADTYNN 231 (788)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~~ 231 (788)
-.+++|+|..|.|||||++.++.-
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (220)
T cd03263 28 GEIFGLLGHNGAGKTTTLKMLTGE 51 (220)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 458999999999999999999873
No 335
>PRK06762 hypothetical protein; Provisional
Probab=94.70 E-value=0.026 Score=54.05 Aligned_cols=23 Identities=26% Similarity=0.307 Sum_probs=21.2
Q ss_pred cEEEEEEcCCCChHHHHHHHHHc
Q 003890 208 LSVVAILNGSGFDKTAFAADTYN 230 (788)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~ 230 (788)
..+|.|.|++|+||||+|+.+.+
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~ 24 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQE 24 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999987
No 336
>PRK05439 pantothenate kinase; Provisional
Probab=94.68 E-value=0.18 Score=53.00 Aligned_cols=81 Identities=14% Similarity=0.080 Sum_probs=47.2
Q ss_pred CCcEEEEEEcCCCChHHHHHHHHHcccCccccc--ceeEEEEeCCCCChHHHHHHHHHHcCCCCCCcccccCCHHHHHHH
Q 003890 206 SGLSVVAILNGSGFDKTAFAADTYNNNHIKFYF--DCLAWVRVSIAYDSGKILDDIIKSVMPPSRVSVIIGEDYKLKKTI 283 (788)
Q Consensus 206 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F--~~~~wv~vs~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~ 283 (788)
...-+|||.|.+|+||||+|+.+.. ...... ..+.-++...-+...+.+.. ..+.. ....+...+.+.+...
T Consensus 84 ~~~~iIgIaG~~gsGKSTla~~L~~--~l~~~~~~~~v~vi~~DdFy~~~~~l~~--~~l~~--~kg~Pes~D~~~l~~~ 157 (311)
T PRK05439 84 KVPFIIGIAGSVAVGKSTTARLLQA--LLSRWPEHPKVELVTTDGFLYPNAVLEE--RGLMK--RKGFPESYDMRALLRF 157 (311)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH--HHHhhCCCCceEEEeccccccCHHHHhh--hhccc--cCCCcccccHHHHHHH
Confidence 4578999999999999999998887 333221 12444444433333322221 11111 1112356677777777
Q ss_pred HHHHhcCCc
Q 003890 284 LRDYLTNKK 292 (788)
Q Consensus 284 l~~~l~~kr 292 (788)
|.....|+.
T Consensus 158 L~~Lk~G~~ 166 (311)
T PRK05439 158 LSDVKSGKP 166 (311)
T ss_pred HHHHHcCCC
Confidence 777777765
No 337
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.68 E-value=0.086 Score=58.88 Aligned_cols=88 Identities=14% Similarity=0.073 Sum_probs=45.3
Q ss_pred cEEEEEEcCCCChHHHHHHHHHcccCcccccceeEEEEeCC-CCChHHHHHHHHHHcCCCCCCcccccCCHHHHHHHHHH
Q 003890 208 LSVVAILNGSGFDKTAFAADTYNNNHIKFYFDCLAWVRVSI-AYDSGKILDDIIKSVMPPSRVSVIIGEDYKLKKTILRD 286 (788)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~-~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~ 286 (788)
-.+|+|+|.+|+||||++..+......+.....+..++... .....+-++...+.++.... ...+...+...+++
T Consensus 350 G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~----~a~d~~~L~~aL~~ 425 (559)
T PRK12727 350 GGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVH----EADSAESLLDLLER 425 (559)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeE----ecCcHHHHHHHHHH
Confidence 57999999999999999988776211111122344554321 11222222222233332221 22334445544443
Q ss_pred HhcCCcEEEEEeCCC
Q 003890 287 YLTNKKYFIVLDDVF 301 (788)
Q Consensus 287 ~l~~kr~LlVLDdvw 301 (788)
+.+ .=+|++|..-
T Consensus 426 -l~~-~DLVLIDTaG 438 (559)
T PRK12727 426 -LRD-YKLVLIDTAG 438 (559)
T ss_pred -hcc-CCEEEecCCC
Confidence 333 4477888774
No 338
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=94.67 E-value=0.28 Score=48.45 Aligned_cols=24 Identities=13% Similarity=0.043 Sum_probs=21.7
Q ss_pred cEEEEEEcCCCChHHHHHHHHHcc
Q 003890 208 LSVVAILNGSGFDKTAFAADTYNN 231 (788)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~~ 231 (788)
-.+++|+|..|.|||||++.+...
T Consensus 27 Ge~~~l~G~nGsGKSTLl~~i~G~ 50 (200)
T PRK13540 27 GGLLHLKGSNGAGKTTLLKLIAGL 50 (200)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 468999999999999999998874
No 339
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=94.64 E-value=0.076 Score=58.79 Aligned_cols=93 Identities=17% Similarity=0.251 Sum_probs=56.7
Q ss_pred cEEEEEEcCCCChHHHHHHHHHcccCcccccceeEEEEeCCCCC-hHHHHHHHHHHcCCCCCCcc--cccCC------HH
Q 003890 208 LSVVAILNGSGFDKTAFAADTYNNNHIKFYFDCLAWVRVSIAYD-SGKILDDIIKSVMPPSRVSV--IIGED------YK 278 (788)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~-~~~~~~~il~~l~~~~~~~~--~~~~~------~~ 278 (788)
-..++|.|.+|+|||||+.++..... +.+-+.++++-+++... +.++..++...-......-. ..+.+ .-
T Consensus 143 GQR~gIfa~~G~GKt~Ll~~~~~~~~-~~~~dv~V~~liGER~rEv~ef~~~~~~~~~l~rsvvv~atsd~~~~~R~~a~ 221 (461)
T PRK12597 143 GGKTGLFGGAGVGKTVLMMELIFNIS-KQHSGSSVFAGVGERSREGHELYHEMKESGVLDKTVMVYGQMNEPPGARMRVV 221 (461)
T ss_pred CCEEEeecCCCCChhHHHHHHHHHHH-hhCCCEEEEEcCCcchHHHHHHHHHHHhcCCcceeEEEecCCCCCHHHHHHHH
Confidence 45789999999999999988887422 22456678888877654 55666666543211111000 00111 11
Q ss_pred HHHHHHHHHh---cCCcEEEEEeCCC
Q 003890 279 LKKTILRDYL---TNKKYFIVLDDVF 301 (788)
Q Consensus 279 ~~~~~l~~~l---~~kr~LlVLDdvw 301 (788)
..+..+.+++ +|+++|+++||+-
T Consensus 222 ~~a~tiAEyfrd~~G~~VLl~~DslT 247 (461)
T PRK12597 222 LTGLTIAEYLRDEEKEDVLLFIDNIF 247 (461)
T ss_pred HHHHHHHHHHHHhcCCceEEEeccch
Confidence 2233455666 3899999999994
No 340
>PF12061 DUF3542: Protein of unknown function (DUF3542); InterPro: IPR021929 R1 is a gene for resistance to late blight, the most destructive disease in potato cultivation worldwide. The R1 gene belongs to the class of plant genes for pathogen resistance that have a leucine zipper motif, a putative nucleotide binding domain and a leucine-rich repeat domain []. Most proteins matching this entry are found associated with PF00931 from PFAM.
Probab=94.63 E-value=0.088 Score=53.51 Aligned_cols=85 Identities=21% Similarity=0.202 Sum_probs=63.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHchhc---cCCcccccCChHHHHHHHHHHHHhHHHHHHHHHHhhhcccCCCccccc
Q 003890 58 VARLLFQLIRQKFDEFEVALPFLQLLDLE---ESDEDVKRGDILEILEDINHFVHESEEAIDAFFINIMQQQSRENESES 134 (788)
Q Consensus 58 ~~~~~~~~~~~L~~~L~~i~~~l~~a~~~---~~~~~~~~~~~~~Wl~~l~~~~y~~ed~lD~~~~~~~~~~~~~~~~~~ 134 (788)
...-++.+++-++.+++++|+|++..... ..+. .. .+..++...||++|+++|.+...... .+
T Consensus 315 SlaflKnQiqvIQ~elesLqpFLk~V~ee~~nkh~~-~e-----d~a~~ii~kAyevEYVVDaCi~k~~P---~W----- 380 (402)
T PF12061_consen 315 SLAFLKNQIQVIQTELESLQPFLKHVVEEPHNKHDT-NE-----DCATQIIRKAYEVEYVVDACISKSVP---HW----- 380 (402)
T ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHhccchhhhh-hh-----hHHHHHHHHHhheeeeeehhhcCCCc---HH-----
Confidence 46778999999999999999999988443 3333 77 99999999999999999998533221 11
Q ss_pred chhhhhHHHHHHHHHHHHHHHhc
Q 003890 135 STKMALLVGLHSKIIDIRNRMQQ 157 (788)
Q Consensus 135 ~~~~~~~~~~~~~i~~l~~~l~~ 157 (788)
+...+...+...|+.+++++++
T Consensus 381 -cl~~WL~dIieei~~ik~~i~e 402 (402)
T PF12061_consen 381 -CLERWLLDIIEEITCIKAKIQE 402 (402)
T ss_pred -HHHHHHHHHHHHHHHHHHHhcC
Confidence 1223456677888888877653
No 341
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=94.63 E-value=0.19 Score=51.09 Aligned_cols=91 Identities=11% Similarity=0.052 Sum_probs=54.9
Q ss_pred CCcEEEEEEcCCCChHHHHHHHHHcccCcccccceeEEEEeCCCCChHHHHHHHHHHcCCCCCC----------------
Q 003890 206 SGLSVVAILNGSGFDKTAFAADTYNNNHIKFYFDCLAWVRVSIAYDSGKILDDIIKSVMPPSRV---------------- 269 (788)
Q Consensus 206 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~~l~~~~~~---------------- 269 (788)
..-+++.|+|.+|+|||+||.++... ..+. =..++|++..+.+ ..+.+.+ .+++.....
T Consensus 23 ~~g~~~~i~G~~GsGKt~l~~~~~~~-~~~~-g~~~~y~~~e~~~--~~~~~~~-~~~g~~~~~~~~~g~l~i~~~~~~~ 97 (234)
T PRK06067 23 PFPSLILIEGDHGTGKSVLSQQFVYG-ALKQ-GKKVYVITTENTS--KSYLKQM-ESVKIDISDFFLWGYLRIFPLNTEG 97 (234)
T ss_pred cCCcEEEEECCCCCChHHHHHHHHHH-HHhC-CCEEEEEEcCCCH--HHHHHHH-HHCCCChhHHHhCCCceEEeccccc
Confidence 45678999999999999999998542 1222 2358888876543 4444443 233221110
Q ss_pred cccccCCHHHHHHHHHHHhcC-CcEEEEEeCCC
Q 003890 270 SVIIGEDYKLKKTILRDYLTN-KKYFIVLDDVF 301 (788)
Q Consensus 270 ~~~~~~~~~~~~~~l~~~l~~-kr~LlVLDdvw 301 (788)
......+.+.+...+.+.++. +.-++|+|.+-
T Consensus 98 ~~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t 130 (234)
T PRK06067 98 FEWNSTLANKLLELIIEFIKSKREDVIIIDSLT 130 (234)
T ss_pred cccCcchHHHHHHHHHHHHHhcCCCEEEEecHH
Confidence 001123446677777777754 55589999874
No 342
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.62 E-value=0.35 Score=51.88 Aligned_cols=103 Identities=7% Similarity=0.021 Sum_probs=59.2
Q ss_pred CcEEEEEEcCCCChHHHHHHHHHcccCcccccceeEEEEeCC-CCChHHHHHHHHHHcCCCCCCcccccCCHHHHHHHHH
Q 003890 207 GLSVVAILNGSGFDKTAFAADTYNNNHIKFYFDCLAWVRVSI-AYDSGKILDDIIKSVMPPSRVSVIIGEDYKLKKTILR 285 (788)
Q Consensus 207 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~-~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~l~ 285 (788)
+.+++.++|+.|+||||++..+... ....-..+.+++... .....+-++...+.++.+.. ...+..++...+.
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~--l~~~g~~V~lItaDtyR~gAveQLk~yae~lgvpv~----~~~dp~dL~~al~ 278 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQ--LLKQNRTVGFITTDTFRSGAVEQFQGYADKLDVELI----VATSPAELEEAVQ 278 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCeEEEEeCCccCccHHHHHHHHhhcCCCCEE----ecCCHHHHHHHHH
Confidence 4689999999999999998888763 222212466666532 22334445555555544322 2345666666555
Q ss_pred HHhc-CCcEEEEEeCCCC---ChhhHHHHhhhcC
Q 003890 286 DYLT-NKKYFIVLDDVFN---DSDIWDDLEQVLP 315 (788)
Q Consensus 286 ~~l~-~kr~LlVLDdvw~---~~~~~~~l~~~l~ 315 (788)
..-. +..=+|++|-.-. +....+.+.....
T Consensus 279 ~l~~~~~~D~VLIDTAGr~~~d~~~l~EL~~l~~ 312 (407)
T PRK12726 279 YMTYVNCVDHILIDTVGRNYLAEESVSEISAYTD 312 (407)
T ss_pred HHHhcCCCCEEEEECCCCCccCHHHHHHHHHHhh
Confidence 4321 3446788888752 2334455554443
No 343
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=94.61 E-value=0.0059 Score=69.45 Aligned_cols=238 Identities=16% Similarity=0.049 Sum_probs=117.8
Q ss_pred ccccceEEecCCCCchhhhhhhhhhhcCCccccEEEecCC-C-CCCC----CccccCCCCccEEEecCCC-Cccc-Chhh
Q 003890 519 DIYLQSFLNHSSESDHLALIDCENFCEKFKHLRILNLGSA-V-LVQF----PPGLENLFHLKYLKLNIPS-LKCL-PSLL 590 (788)
Q Consensus 519 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~-~-l~~l----p~~i~~L~~L~~L~L~~~~-i~~l-p~~i 590 (788)
+++|+.+.+.++....... ........++|+.|+++++ . +... +.....+.+|+.|+++++. ++.. -..+
T Consensus 187 ~~~L~~l~l~~~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l 264 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDS--LDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSAL 264 (482)
T ss_pred CchhhHhhhcccccCChhh--HHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHH
Confidence 5667777666655422110 1255667778888888763 2 1111 1223345677777777765 4422 1223
Q ss_pred -cCCCCCcEEEccCCC-Ccc--cchhhhcccccceeeccCccCCC--CCcCCcCccccccccccccccccCccccCCCCC
Q 003890 591 -CTLLNLQTLEMPSSY-VDQ--SPEDIWMMQKLMHLNFGSITLPA--PPKNYSSSLKNLIFISTLNPSSCTPDILGRLPN 664 (788)
Q Consensus 591 -~~L~~L~~L~L~~~~-l~~--lp~~l~~L~~L~~L~l~~~~~~~--~i~~~~~~l~~L~~L~~~~~~~~~~~~l~~L~~ 664 (788)
..+++|++|.+.+|. ++. +-.....+++|++|+++.|.... ++.....++++|+.|.+... ..+..
T Consensus 265 ~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~--------~~c~~ 336 (482)
T KOG1947|consen 265 ASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSL--------NGCPS 336 (482)
T ss_pred HhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhc--------CCCcc
Confidence 236778888877673 332 22334567778888887664321 11111123444444433221 11444
Q ss_pred CCeEEEEccCCcC-hhcHHHhccCCCCCCEEEeecCCCCCcccccccCCCcccc-ccccccccccccCcccCCCCCcceE
Q 003890 665 VQTLRISGDLSCY-HSGVSKSLCELHKLECLKLVNERKPSRMVLYEYQFPPTDM-ARILSQLIRQEFVESEMSLPLLQLL 742 (788)
Q Consensus 665 L~~L~l~~~~~~~-~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~l~~~~~L-~~L~~~l~~~~lp~~l~~l~~L~~L 742 (788)
++.+.+.++.... .......+..+++|+.+.|..+... +......+..+++| ..+... ......|+.|
T Consensus 337 l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~~~-~~~~~~~l~gc~~l~~~l~~~---------~~~~~~l~~L 406 (482)
T KOG1947|consen 337 LTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCGIS-DLGLELSLRGCPNLTESLELR---------LCRSDSLRVL 406 (482)
T ss_pred HHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhhcc-CcchHHHhcCCcccchHHHHH---------hccCCccceE
Confidence 5555555544111 1233345566777777777754422 11112334445555 222000 0111227788
Q ss_pred EEeccccccccccCCcccccc-cccCCeeEecccCchh
Q 003890 743 DLEESDEEDDERSDILEILQD-INDFVHESEEAIDTFF 779 (788)
Q Consensus 743 ~L~~~~l~~~~~~~~l~~l~~-L~~L~~L~L~~~~~l~ 779 (788)
+++.|....+. .+..... ..++..+++.+|+...
T Consensus 407 ~l~~~~~~t~~---~l~~~~~~~~~~~~l~~~~~~~~~ 441 (482)
T KOG1947|consen 407 NLSDCRLVTDK---GLRCLADSCSNLKDLDLSGCRVIT 441 (482)
T ss_pred ecccCcccccc---chHHHhhhhhccccCCccCccccc
Confidence 88887654330 2222222 6667777777776544
No 344
>PRK06936 type III secretion system ATPase; Provisional
Probab=94.59 E-value=0.11 Score=57.02 Aligned_cols=90 Identities=13% Similarity=0.151 Sum_probs=53.0
Q ss_pred cEEEEEEcCCCChHHHHHHHHHcccCcccccceeEEEEeCCCCC-hHHHHHHHHHHcCCCCCCcc--cccCCH------H
Q 003890 208 LSVVAILNGSGFDKTAFAADTYNNNHIKFYFDCLAWVRVSIAYD-SGKILDDIIKSVMPPSRVSV--IIGEDY------K 278 (788)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~-~~~~~~~il~~l~~~~~~~~--~~~~~~------~ 278 (788)
-..++|.|..|+|||||.+.+++... -+.++++-+++... +.++....+..-+.....-. ..+... -
T Consensus 162 Gq~~~I~G~sG~GKStLl~~Ia~~~~----~dv~V~~liGERgrEv~ef~~~~l~~~~l~rtvvv~atsd~p~~~R~~a~ 237 (439)
T PRK06936 162 GQRMGIFAAAGGGKSTLLASLIRSAE----VDVTVLALIGERGREVREFIESDLGEEGLRKAVLVVATSDRPSMERAKAG 237 (439)
T ss_pred CCEEEEECCCCCChHHHHHHHhcCCC----CCEEEEEEEccCcHHHHHHHHHHhcccccceeEEEEECCCCCHHHHHHHH
Confidence 46899999999999999999998432 24577777877754 44444443332111110000 001111 1
Q ss_pred HHHHHHHHHh--cCCcEEEEEeCCC
Q 003890 279 LKKTILRDYL--TNKKYFIVLDDVF 301 (788)
Q Consensus 279 ~~~~~l~~~l--~~kr~LlVLDdvw 301 (788)
...-.+.+++ +||++|+++||+-
T Consensus 238 ~~a~tiAEyfrd~G~~Vll~~DslT 262 (439)
T PRK06936 238 FVATSIAEYFRDQGKRVLLLMDSVT 262 (439)
T ss_pred HHHHHHHHHHHHcCCCEEEeccchh
Confidence 1122344444 6899999999995
No 345
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=94.59 E-value=0.17 Score=53.97 Aligned_cols=58 Identities=9% Similarity=0.113 Sum_probs=41.1
Q ss_pred CCcEEEEEEcCCCChHHHHHHHHHcccCccc----ccceeEEEEeCCCCChHHHHHHHHHHcC
Q 003890 206 SGLSVVAILNGSGFDKTAFAADTYNNNHIKF----YFDCLAWVRVSIAYDSGKILDDIIKSVM 264 (788)
Q Consensus 206 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~----~F~~~~wv~vs~~~~~~~~~~~il~~l~ 264 (788)
..-.++-|+|.+|+||||++.+++-...... .=..++||+....|+..++. ++++.++
T Consensus 93 ~~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~rl~-~~~~~~g 154 (310)
T TIGR02236 93 ETQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERIM-QMAEARG 154 (310)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHHHH-HHHHHcC
Confidence 3467889999999999999998876433211 11269999998888877765 3444443
No 346
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=94.56 E-value=0.077 Score=58.54 Aligned_cols=93 Identities=14% Similarity=0.244 Sum_probs=55.1
Q ss_pred cEEEEEEcCCCChHHHHHHHHHcccCcccccceeEEEEeCCCCC-hHHHHHHHHHHcCCCCCCc--ccccC-C-----HH
Q 003890 208 LSVVAILNGSGFDKTAFAADTYNNNHIKFYFDCLAWVRVSIAYD-SGKILDDIIKSVMPPSRVS--VIIGE-D-----YK 278 (788)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~-~~~~~~~il~~l~~~~~~~--~~~~~-~-----~~ 278 (788)
-..++|.|..|+|||||+.++......... +.++++-+++... +.++.+++...-......- ...+. . .-
T Consensus 144 GQR~gIfa~~GvGKt~Ll~~i~~~~~~~~~-~v~V~~liGER~rEv~efi~~~~~~~~l~rsvvV~atsd~p~~~r~~a~ 222 (463)
T PRK09280 144 GGKIGLFGGAGVGKTVLIQELINNIAKEHG-GYSVFAGVGERTREGNDLYHEMKESGVLDKTALVFGQMNEPPGARLRVA 222 (463)
T ss_pred CCEEEeecCCCCChhHHHHHHHHHHHhcCC-CEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHHH
Confidence 357899999999999999887653221111 3477777877654 5666666665321111000 00011 1 11
Q ss_pred HHHHHHHHHh---cCCcEEEEEeCCC
Q 003890 279 LKKTILRDYL---TNKKYFIVLDDVF 301 (788)
Q Consensus 279 ~~~~~l~~~l---~~kr~LlVLDdvw 301 (788)
...-.+.+++ +|+++|+++||+-
T Consensus 223 ~~a~tiAEyfrd~~G~~VLll~DslT 248 (463)
T PRK09280 223 LTGLTMAEYFRDVEGQDVLLFIDNIF 248 (463)
T ss_pred HHHHHHHHHHHHhcCCceEEEecchH
Confidence 2233455666 6799999999995
No 347
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=94.56 E-value=0.29 Score=49.36 Aligned_cols=24 Identities=17% Similarity=0.005 Sum_probs=21.7
Q ss_pred cEEEEEEcCCCChHHHHHHHHHcc
Q 003890 208 LSVVAILNGSGFDKTAFAADTYNN 231 (788)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~~ 231 (788)
-.+++|+|..|+|||||++.+...
T Consensus 33 Ge~~~i~G~nGsGKSTLl~~l~G~ 56 (225)
T PRK10247 33 GEFKLITGPSGCGKSTLLKIVASL 56 (225)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcc
Confidence 468999999999999999999874
No 348
>PRK14527 adenylate kinase; Provisional
Probab=94.55 E-value=0.087 Score=51.70 Aligned_cols=25 Identities=24% Similarity=0.147 Sum_probs=22.1
Q ss_pred CcEEEEEEcCCCChHHHHHHHHHcc
Q 003890 207 GLSVVAILNGSGFDKTAFAADTYNN 231 (788)
Q Consensus 207 ~~~vi~I~G~gGiGKTtLa~~v~~~ 231 (788)
...+|.|+|.+|+||||+|+.+.+.
T Consensus 5 ~~~~i~i~G~pGsGKsT~a~~La~~ 29 (191)
T PRK14527 5 KNKVVIFLGPPGAGKGTQAERLAQE 29 (191)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3578999999999999999999863
No 349
>PRK03839 putative kinase; Provisional
Probab=94.48 E-value=0.027 Score=54.76 Aligned_cols=22 Identities=23% Similarity=0.291 Sum_probs=20.2
Q ss_pred EEEEEcCCCChHHHHHHHHHcc
Q 003890 210 VVAILNGSGFDKTAFAADTYNN 231 (788)
Q Consensus 210 vi~I~G~gGiGKTtLa~~v~~~ 231 (788)
.|.|.|++|+||||+|+.+++.
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~ 23 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEK 23 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4889999999999999999983
No 350
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.47 E-value=0.37 Score=52.83 Aligned_cols=106 Identities=22% Similarity=0.210 Sum_probs=61.5
Q ss_pred CCcEEEEEEcCCCChHHHHHHHHHcccCcccccceeEEEEeCCCCChHHHHHHHHHHcCCCCCCcccccCCHHHHHHHHH
Q 003890 206 SGLSVVAILNGSGFDKTAFAADTYNNNHIKFYFDCLAWVRVSIAYDSGKILDDIIKSVMPPSRVSVIIGEDYKLKKTILR 285 (788)
Q Consensus 206 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~l~ 285 (788)
.+...+-+.|++|+|||+||..+.. ...|+.+=-+ |.+ ++ -..++..-...++
T Consensus 536 s~lvSvLl~Gp~~sGKTaLAA~iA~----~S~FPFvKii--Spe----~m-----------------iG~sEsaKc~~i~ 588 (744)
T KOG0741|consen 536 SPLVSVLLEGPPGSGKTALAAKIAL----SSDFPFVKII--SPE----DM-----------------IGLSESAKCAHIK 588 (744)
T ss_pred CcceEEEEecCCCCChHHHHHHHHh----hcCCCeEEEe--ChH----Hc-----------------cCccHHHHHHHHH
Confidence 3566777889999999999999986 4557743222 111 10 1112222333344
Q ss_pred HHh----cCCcEEEEEeCCCCChhhH------------HHHhhhcCCC-CCC--cEEEEecCChHHHhhcccc
Q 003890 286 DYL----TNKKYFIVLDDVFNDSDIW------------DDLEQVLPDN-QNG--SRVLITVTDLDLLESLEME 339 (788)
Q Consensus 286 ~~l----~~kr~LlVLDdvw~~~~~~------------~~l~~~l~~~-~~g--skIivTTR~~~v~~~~~~~ 339 (788)
+.+ +..=-.||+||+. .-.+| ..+...+... .+| --|+-||....|...|+-.
T Consensus 589 k~F~DAYkS~lsiivvDdiE-rLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~ 660 (744)
T KOG0741|consen 589 KIFEDAYKSPLSIIVVDDIE-RLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGIL 660 (744)
T ss_pred HHHHHhhcCcceEEEEcchh-hhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHH
Confidence 443 4456789999995 43334 3333333322 223 3466688888888887643
No 351
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=94.46 E-value=0.26 Score=49.52 Aligned_cols=24 Identities=17% Similarity=0.207 Sum_probs=21.5
Q ss_pred cEEEEEEcCCCChHHHHHHHHHcc
Q 003890 208 LSVVAILNGSGFDKTAFAADTYNN 231 (788)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~~ 231 (788)
-.+++|+|..|.|||||++.+...
T Consensus 30 Ge~~~i~G~nGsGKSTLl~~l~G~ 53 (221)
T cd03244 30 GEKVGIVGRTGSGKSSLLLALFRL 53 (221)
T ss_pred CCEEEEECCCCCCHHHHHHHHHcC
Confidence 468999999999999999999863
No 352
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=94.45 E-value=0.4 Score=47.96 Aligned_cols=24 Identities=13% Similarity=0.021 Sum_probs=21.7
Q ss_pred cEEEEEEcCCCChHHHHHHHHHcc
Q 003890 208 LSVVAILNGSGFDKTAFAADTYNN 231 (788)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~~ 231 (788)
-.+++|+|..|.|||||.+.+...
T Consensus 37 Ge~~~i~G~nGsGKSTLl~~i~G~ 60 (214)
T PRK13543 37 GEALLVQGDNGAGKTTLLRVLAGL 60 (214)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCC
Confidence 458999999999999999999874
No 353
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=94.44 E-value=0.22 Score=51.51 Aligned_cols=106 Identities=16% Similarity=0.154 Sum_probs=57.9
Q ss_pred cchhcHHHHHHHHhcCCCCcEEEEEEcCCCChHHHHHHHHHcccCcccccceeEEEEeCCCCChHHHHHHHHHHcCCCCC
Q 003890 189 EFERGREELFDLLIEGPSGLSVVAILNGSGFDKTAFAADTYNNNHIKFYFDCLAWVRVSIAYDSGKILDDIIKSVMPPSR 268 (788)
Q Consensus 189 Gr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~~l~~~~~ 268 (788)
|...+..+.+..+.... -.+|.|.|..|.||||+++.+.+ .+...-..++.+.-..++....+ .++...
T Consensus 63 g~~~~~~~~l~~~~~~~--~GlilisG~tGSGKTT~l~all~--~i~~~~~~iitiEdp~E~~~~~~-----~q~~v~-- 131 (264)
T cd01129 63 GLKPENLEIFRKLLEKP--HGIILVTGPTGSGKTTTLYSALS--ELNTPEKNIITVEDPVEYQIPGI-----NQVQVN-- 131 (264)
T ss_pred CCCHHHHHHHHHHHhcC--CCEEEEECCCCCcHHHHHHHHHh--hhCCCCCeEEEECCCceecCCCc-----eEEEeC--
Confidence 44444433344443332 46899999999999999998876 33221112333332222222111 111111
Q ss_pred CcccccCCHHHHHHHHHHHhcCCcEEEEEeCCCCChhhHHHHh
Q 003890 269 VSVIIGEDYKLKKTILRDYLTNKKYFIVLDDVFNDSDIWDDLE 311 (788)
Q Consensus 269 ~~~~~~~~~~~~~~~l~~~l~~kr~LlVLDdvw~~~~~~~~l~ 311 (788)
..........++..|+...=.|+++++. +.+....+.
T Consensus 132 -----~~~~~~~~~~l~~~lR~~PD~i~vgEiR-~~e~a~~~~ 168 (264)
T cd01129 132 -----EKAGLTFARGLRAILRQDPDIIMVGEIR-DAETAEIAV 168 (264)
T ss_pred -----CcCCcCHHHHHHHHhccCCCEEEeccCC-CHHHHHHHH
Confidence 1111245667777888788899999998 666444333
No 354
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=94.44 E-value=0.1 Score=59.58 Aligned_cols=47 Identities=15% Similarity=0.017 Sum_probs=39.3
Q ss_pred CCcccchhcHHHHHHHHhcCCCCcEEEEEEcCCCChHHHHHHHHHcc
Q 003890 185 LDISEFERGREELFDLLIEGPSGLSVVAILNGSGFDKTAFAADTYNN 231 (788)
Q Consensus 185 ~~~vGr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 231 (788)
..++|....+.++.+.+..-...-.-|-|+|..|+|||++|+.++..
T Consensus 187 ~~iig~s~~~~~~~~~i~~~a~~~~pVlI~Ge~GtGK~~~A~~ih~~ 233 (509)
T PRK05022 187 GEMIGQSPAMQQLKKEIEVVAASDLNVLILGETGVGKELVARAIHAA 233 (509)
T ss_pred CceeecCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHh
Confidence 56999999999998888664434567789999999999999999983
No 355
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=94.41 E-value=0.28 Score=51.11 Aligned_cols=53 Identities=9% Similarity=0.034 Sum_probs=35.1
Q ss_pred cEEEEEEcCCCChHHHHHHHHHcccCcccccceeEEEEeCCCCChHHHHHHHHHHc
Q 003890 208 LSVVAILNGSGFDKTAFAADTYNNNHIKFYFDCLAWVRVSIAYDSGKILDDIIKSV 263 (788)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~~l 263 (788)
-.++.|.|.+|+||||++.++..... ..+=..++|++... +..++...+...+
T Consensus 30 g~~~~i~g~~G~GKT~l~~~~~~~~~-~~~g~~vl~iS~E~--~~~~~~~r~~~~~ 82 (271)
T cd01122 30 GELIILTAGTGVGKTTFLREYALDLI-TQHGVRVGTISLEE--PVVRTARRLLGQY 82 (271)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHH-HhcCceEEEEEccc--CHHHHHHHHHHHH
Confidence 45888999999999999998876321 22113478877655 3455666655543
No 356
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=94.37 E-value=0.1 Score=57.81 Aligned_cols=88 Identities=19% Similarity=0.118 Sum_probs=46.9
Q ss_pred cEEEEEEcCCCChHHHHHHHHHcccCcccccceeEEEEeCCC-CChHHHHHHHHHHcCCCCCCcccccCCHHHHHHHHHH
Q 003890 208 LSVVAILNGSGFDKTAFAADTYNNNHIKFYFDCLAWVRVSIA-YDSGKILDDIIKSVMPPSRVSVIIGEDYKLKKTILRD 286 (788)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~-~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~ 286 (788)
-+++.++|++|+||||++..+.........-..+..|+.... ....+-++...+.++.... ...+..++...+.+
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~----~~~~~~~l~~~l~~ 296 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPVE----VVYDPKELAKALEQ 296 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCceE----ccCCHHhHHHHHHH
Confidence 469999999999999988777652110122234666654321 1122223333333433322 23344555555554
Q ss_pred HhcCCcEEEEEeCCC
Q 003890 287 YLTNKKYFIVLDDVF 301 (788)
Q Consensus 287 ~l~~kr~LlVLDdvw 301 (788)
+. ..=+||+|..-
T Consensus 297 -~~-~~DlVlIDt~G 309 (424)
T PRK05703 297 -LR-DCDVILIDTAG 309 (424)
T ss_pred -hC-CCCEEEEeCCC
Confidence 23 34578888763
No 357
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=94.37 E-value=0.26 Score=54.14 Aligned_cols=127 Identities=16% Similarity=0.135 Sum_probs=68.5
Q ss_pred cEEEEEEcCCCChHHHHHHHHHcccCcccccceeEEEEeCCC-CChHHHHHHHHHHcCCCCCCcc--cccC------CHH
Q 003890 208 LSVVAILNGSGFDKTAFAADTYNNNHIKFYFDCLAWVRVSIA-YDSGKILDDIIKSVMPPSRVSV--IIGE------DYK 278 (788)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~-~~~~~~~~~il~~l~~~~~~~~--~~~~------~~~ 278 (788)
-..++|+|..|+|||||++.++...+. ...++. -+.+. ..+.+..+..+..-+.....-. ..+. ...
T Consensus 156 Gqri~I~G~sG~GKTtLl~~Ia~~~~~---~~gvI~-~iGerg~ev~e~~~~~l~~~gl~~tvvv~~tsd~s~~~r~ra~ 231 (432)
T PRK06793 156 GQKIGIFAGSGVGKSTLLGMIAKNAKA---DINVIS-LVGERGREVKDFIRKELGEEGMRKSVVVVATSDESHLMQLRAA 231 (432)
T ss_pred CcEEEEECCCCCChHHHHHHHhccCCC---CeEEEE-eCCCCcccHHHHHHHHhhhcccceeEEEEECCCCCHHHHHHHH
Confidence 458899999999999999999874321 112332 33433 5566666655554321110000 0011 111
Q ss_pred HHHHHHHHHh--cCCcEEEEEeCCCCChhhHHHHhhhcCCC-CCCcEEEEecCChHHHhhccc
Q 003890 279 LKKTILRDYL--TNKKYFIVLDDVFNDSDIWDDLEQVLPDN-QNGSRVLITVTDLDLLESLEM 338 (788)
Q Consensus 279 ~~~~~l~~~l--~~kr~LlVLDdvw~~~~~~~~l~~~l~~~-~~gskIivTTR~~~v~~~~~~ 338 (788)
..+..+.+++ +++++|+|+||+-...+....+...+... ..|--..+.|....+++..+.
T Consensus 232 ~~a~~iAEyfr~~G~~VLlilDslTr~a~A~reisl~~~e~p~~G~~~~~~s~l~~L~ERag~ 294 (432)
T PRK06793 232 KLATSIAEYFRDQGNNVLLMMDSVTRFADARRSVDIAVKELPIGGKTLLMESYMKKLLERSGK 294 (432)
T ss_pred HHHHHHHHHHHHcCCcEEEEecchHHHHHHHHHHHHHhcCCCCCCeeeeeeccchhHHHHhcc
Confidence 2223344444 57999999999962223334443332211 125556666666777766543
No 358
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=94.35 E-value=0.13 Score=52.41 Aligned_cols=81 Identities=16% Similarity=0.077 Sum_probs=44.7
Q ss_pred EEEEEcCCCChHHHHHHHHHcccCcccccceeEEEEeCC--CCChHHHHHHHHHHcCCCCCCcc--cccCCHHHHHHHHH
Q 003890 210 VVAILNGSGFDKTAFAADTYNNNHIKFYFDCLAWVRVSI--AYDSGKILDDIIKSVMPPSRVSV--IIGEDYKLKKTILR 285 (788)
Q Consensus 210 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~--~~~~~~~~~~il~~l~~~~~~~~--~~~~~~~~~~~~l~ 285 (788)
+|+|.|.+|+||||+|+.+... .+..=..++.++... .++....-..+.........-+. ++..+.+.+.+.++
T Consensus 1 IIgItG~SGSGKTTv~~~l~~~--l~~~g~~v~vI~~D~yyr~~r~~~~~~~~~a~~~~~nfdHf~PeAnd~dlL~~~l~ 78 (277)
T cd02029 1 VIAVTGSSGAGTTTVKRAFEHI--FAREGIHPAVVEGDSFHRYERMEMKMAIAEALDAGRNFSHFGPEANLFDLLEELFR 78 (277)
T ss_pred CEEEECCCCCCHHHHHHHHHHH--HHhcCCceEEEeccccccCCchhHHHHHHHHhhcCCCCCCCCcccccHHHHHHHHH
Confidence 5899999999999999988862 221101133333222 12322222222222211111122 46677788888888
Q ss_pred HHhcCCc
Q 003890 286 DYLTNKK 292 (788)
Q Consensus 286 ~~l~~kr 292 (788)
..-+++.
T Consensus 79 ~L~~g~~ 85 (277)
T cd02029 79 TYGETGR 85 (277)
T ss_pred HHHcCCC
Confidence 8877653
No 359
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=94.33 E-value=0.5 Score=48.72 Aligned_cols=24 Identities=21% Similarity=0.134 Sum_probs=21.6
Q ss_pred cEEEEEEcCCCChHHHHHHHHHcc
Q 003890 208 LSVVAILNGSGFDKTAFAADTYNN 231 (788)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~~ 231 (788)
-.+++|+|..|.|||||++.+..-
T Consensus 38 Ge~~~I~G~NGsGKSTLlk~l~Gl 61 (257)
T PRK11247 38 GQFVAVVGRSGCGKSTLLRLLAGL 61 (257)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 458999999999999999999863
No 360
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=94.33 E-value=0.14 Score=52.62 Aligned_cols=20 Identities=15% Similarity=0.335 Sum_probs=18.8
Q ss_pred EEEEcCCCChHHHHHHHHHc
Q 003890 211 VAILNGSGFDKTAFAADTYN 230 (788)
Q Consensus 211 i~I~G~gGiGKTtLa~~v~~ 230 (788)
|.++|++|+||||+|+.+..
T Consensus 2 Ivl~G~pGSGKST~a~~La~ 21 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAK 21 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHH
Confidence 77999999999999999987
No 361
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=94.32 E-value=0.059 Score=48.96 Aligned_cols=40 Identities=13% Similarity=0.035 Sum_probs=28.5
Q ss_pred cHHHHHHHHhcCCCCcEEEEEEcCCCChHHHHHHHHHccc
Q 003890 193 GREELFDLLIEGPSGLSVVAILNGSGFDKTAFAADTYNNN 232 (788)
Q Consensus 193 ~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 232 (788)
+.+++-+.|...=..-.+|.+.|.-|+||||+++.+....
T Consensus 7 ~t~~l~~~l~~~l~~~~~i~l~G~lGaGKTtl~~~l~~~l 46 (133)
T TIGR00150 7 AMDKFGKAFAKPLDFGTVVLLKGDLGAGKTTLVQGLLQGL 46 (133)
T ss_pred HHHHHHHHHHHhCCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 3444445454321235689999999999999999999853
No 362
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=94.31 E-value=0.13 Score=55.07 Aligned_cols=44 Identities=16% Similarity=0.014 Sum_probs=34.1
Q ss_pred cccchhcHHHHHHHHhcCCCCcEEEEEEcCCCChHHHHHHHHHc
Q 003890 187 ISEFERGREELFDLLIEGPSGLSVVAILNGSGFDKTAFAADTYN 230 (788)
Q Consensus 187 ~vGr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 230 (788)
++|....+.++.+.+..-...-.-|-|+|..|+||+++|+.++.
T Consensus 1 liG~S~~m~~~~~~~~~~a~~~~pVLI~GE~GtGK~~lAr~iH~ 44 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRLAPLDRPVLIIGERGTGKELIAARLHY 44 (329)
T ss_pred CCcCCHHHHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHH
Confidence 46777777777777755433345678999999999999999987
No 363
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=94.30 E-value=0.34 Score=45.32 Aligned_cols=22 Identities=14% Similarity=0.279 Sum_probs=19.6
Q ss_pred EEEEEcCCCChHHHHHHHHHcc
Q 003890 210 VVAILNGSGFDKTAFAADTYNN 231 (788)
Q Consensus 210 vi~I~G~gGiGKTtLa~~v~~~ 231 (788)
+|.++|++|+||||+|+.+...
T Consensus 1 li~l~G~~GsGKST~a~~l~~~ 22 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAER 22 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhh
Confidence 4678999999999999999883
No 364
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=94.30 E-value=0.0014 Score=63.57 Aligned_cols=88 Identities=18% Similarity=0.127 Sum_probs=66.4
Q ss_pred hhhcCCccccEEEecCCCCCCCCccccCCCCccEEEecCCCCcccChhhcCCCCCcEEEccCCCCcccchhhhcccccce
Q 003890 542 NFCEKFKHLRILNLGSAVLVQFPPGLENLFHLKYLKLNIPSLKCLPSLLCTLLNLQTLEMPSSYVDQSPEDIWMMQKLMH 621 (788)
Q Consensus 542 ~~~~~l~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~lp~~l~~L~~L~~ 621 (788)
..+..++...+||++.|.+..+-..++.+..|..|+++.|.+..+|+.++.+..+..+++.+|+.+..|.++++++++++
T Consensus 36 ~ei~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~ 115 (326)
T KOG0473|consen 36 REIASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKK 115 (326)
T ss_pred hhhhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCccccccCCcch
Confidence 34455667778888888777666677777777778888777888888887777788888877777778877888888888
Q ss_pred eeccCccC
Q 003890 622 LNFGSITL 629 (788)
Q Consensus 622 L~l~~~~~ 629 (788)
+++.++.+
T Consensus 116 ~e~k~~~~ 123 (326)
T KOG0473|consen 116 NEQKKTEF 123 (326)
T ss_pred hhhccCcc
Confidence 87766543
No 365
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=94.29 E-value=0.1 Score=55.41 Aligned_cols=115 Identities=15% Similarity=0.121 Sum_probs=60.8
Q ss_pred cEEEEEEcCCCChHHHHHHHHHcccCcccccceeEEEEeCCCCChHHHHHHHHHHcCCCCCCcccccCCHHHHHHHHHHH
Q 003890 208 LSVVAILNGSGFDKTAFAADTYNNNHIKFYFDCLAWVRVSIAYDSGKILDDIIKSVMPPSRVSVIIGEDYKLKKTILRDY 287 (788)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~~ 287 (788)
-..+.|+|..|.|||||++.+... +.... .++.+.-..+..... .... .+..... ......-...+.+...
T Consensus 144 ~~~ili~G~tGsGKTTll~al~~~--~~~~~-~iv~ied~~El~~~~--~~~~-~l~~~~~---~~~~~~~~~~~~l~~~ 214 (308)
T TIGR02788 144 RKNIIISGGTGSGKTTFLKSLVDE--IPKDE-RIITIEDTREIFLPH--PNYV-HLFYSKG---GQGLAKVTPKDLLQSC 214 (308)
T ss_pred CCEEEEECCCCCCHHHHHHHHHcc--CCccc-cEEEEcCccccCCCC--CCEE-EEEecCC---CCCcCccCHHHHHHHH
Confidence 468999999999999999998873 32221 222232111111110 0000 0000000 0111123345566667
Q ss_pred hcCCcEEEEEeCCCCChhhHHHHhhhcCCCCCCcEEEEecCChHHHhh
Q 003890 288 LTNKKYFIVLDDVFNDSDIWDDLEQVLPDNQNGSRVLITVTDLDLLES 335 (788)
Q Consensus 288 l~~kr~LlVLDdvw~~~~~~~~l~~~l~~~~~gskIivTTR~~~v~~~ 335 (788)
|+...=.+|+|.+. +.+.|+.+.. ...+..| ++.|+...++...
T Consensus 215 Lr~~pd~ii~gE~r-~~e~~~~l~a-~~~g~~~--~i~T~Ha~~~~~~ 258 (308)
T TIGR02788 215 LRMRPDRIILGELR-GDEAFDFIRA-VNTGHPG--SITTLHAGSPEEA 258 (308)
T ss_pred hcCCCCeEEEeccC-CHHHHHHHHH-HhcCCCe--EEEEEeCCCHHHH
Confidence 77778889999998 7776654433 3333322 5777776655443
No 366
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=94.29 E-value=0.077 Score=55.87 Aligned_cols=88 Identities=15% Similarity=0.068 Sum_probs=54.1
Q ss_pred CcEEEEEEcCCCChHHHHHHHHHcccCcccccceeEEEEeCCCCChHHHHHHHHHHcCCCCCCcc-cccCCHHHHHHHHH
Q 003890 207 GLSVVAILNGSGFDKTAFAADTYNNNHIKFYFDCLAWVRVSIAYDSGKILDDIIKSVMPPSRVSV-IIGEDYKLKKTILR 285 (788)
Q Consensus 207 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~~l~~~~~~~~-~~~~~~~~~~~~l~ 285 (788)
.-+++-|+|..|+||||||.++.. +.+..-..++|++....+++. .+..++.....-. .+....++....+.
T Consensus 52 ~G~ivEi~G~~ssGKttLaL~~ia--~~q~~g~~~a~ID~e~~ld~~-----~a~~lGvdl~rllv~~P~~~E~al~~~e 124 (322)
T PF00154_consen 52 RGRIVEIYGPESSGKTTLALHAIA--EAQKQGGICAFIDAEHALDPE-----YAESLGVDLDRLLVVQPDTGEQALWIAE 124 (322)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHH--HHHHTT-EEEEEESSS---HH-----HHHHTT--GGGEEEEE-SSHHHHHHHHH
T ss_pred cCceEEEeCCCCCchhhhHHHHHH--hhhcccceeEEecCcccchhh-----HHHhcCccccceEEecCCcHHHHHHHHH
Confidence 457999999999999999999887 344444559999988777753 3444444322100 12344566666666
Q ss_pred HHhcC-CcEEEEEeCCC
Q 003890 286 DYLTN-KKYFIVLDDVF 301 (788)
Q Consensus 286 ~~l~~-kr~LlVLDdvw 301 (788)
..++. .--++|+|-|-
T Consensus 125 ~lirsg~~~lVVvDSv~ 141 (322)
T PF00154_consen 125 QLIRSGAVDLVVVDSVA 141 (322)
T ss_dssp HHHHTTSESEEEEE-CT
T ss_pred HHhhcccccEEEEecCc
Confidence 66654 44589999885
No 367
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=94.27 E-value=0.094 Score=51.94 Aligned_cols=123 Identities=11% Similarity=0.047 Sum_probs=60.6
Q ss_pred cEEEEEEcCCCChHHHHHHHHHcccCcccccceeEEEEeCCCCChHHHHHHHHHHcCCCCCCcccccCCHHHHHHHHHHH
Q 003890 208 LSVVAILNGSGFDKTAFAADTYNNNHIKFYFDCLAWVRVSIAYDSGKILDDIIKSVMPPSRVSVIIGEDYKLKKTILRDY 287 (788)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~~ 287 (788)
.+++.|.|..|.||||+.+.+.... +..+ .-+++... +....+...|...+........ .......-...+...
T Consensus 29 ~~~~~l~G~n~~GKstll~~i~~~~-~la~--~G~~vpa~--~~~l~~~d~I~~~~~~~d~~~~-~~S~fs~e~~~~~~i 102 (204)
T cd03282 29 SRFHIITGPNMSGKSTYLKQIALLA-IMAQ--IGCFVPAE--YATLPIFNRLLSRLSNDDSMER-NLSTFASEMSETAYI 102 (204)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH-HHHH--cCCCcchh--hcCccChhheeEecCCccccch-hhhHHHHHHHHHHHH
Confidence 4789999999999999999887531 1111 11111110 0011222333333332211000 000111111122222
Q ss_pred h--cCCcEEEEEeCCCC--ChhhH----HHHhhhcCCCCCCcEEEEecCChHHHhhccc
Q 003890 288 L--TNKKYFIVLDDVFN--DSDIW----DDLEQVLPDNQNGSRVLITVTDLDLLESLEM 338 (788)
Q Consensus 288 l--~~kr~LlVLDdvw~--~~~~~----~~l~~~l~~~~~gskIivTTR~~~v~~~~~~ 338 (788)
+ ..++-|+++|..-. +..+- ..+...+.. .|+.+|++|-+.+++..+..
T Consensus 103 l~~~~~~~lvllDE~~~gt~~~~~~~l~~~il~~l~~--~~~~~i~~TH~~~l~~~~~~ 159 (204)
T cd03282 103 LDYADGDSLVLIDELGRGTSSADGFAISLAILECLIK--KESTVFFATHFRDIAAILGN 159 (204)
T ss_pred HHhcCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHh--cCCEEEEECChHHHHHHhhc
Confidence 2 35678999999842 22221 122223322 37899999999998876543
No 368
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=94.26 E-value=0.17 Score=53.67 Aligned_cols=90 Identities=12% Similarity=0.141 Sum_probs=49.8
Q ss_pred cEEEEEEcCCCChHHHHHHHHHcccCcccccceeEEEEeCCC-CChHHHHHHHHHHcCCCCCCc---ccccCC-----HH
Q 003890 208 LSVVAILNGSGFDKTAFAADTYNNNHIKFYFDCLAWVRVSIA-YDSGKILDDIIKSVMPPSRVS---VIIGED-----YK 278 (788)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~-~~~~~~~~~il~~l~~~~~~~---~~~~~~-----~~ 278 (788)
-..++|+|..|+|||||.+.+..... . +..+..-+... -++.++....+..-......- ..+... .-
T Consensus 69 Gqri~I~G~sG~GKTtLl~~Ia~~~~--~--~~~vi~~iGer~~ev~~~~~~~~~~~~l~rtvvv~~t~d~~~~~r~~~~ 144 (326)
T cd01136 69 GQRLGIFAGSGVGKSTLLGMIARGTT--A--DVNVIALIGERGREVREFIEKDLGEEGLKRSVVVVATSDESPLLRVKAA 144 (326)
T ss_pred CcEEEEECCCCCChHHHHHHHhCCCC--C--CEEEEEEEecCCccHHHHHHHHHhcCccceEEEEEcCCCCCHHHHHHHH
Confidence 45789999999999999999997322 1 23344444433 345555555544322111100 000100 11
Q ss_pred HHHHHHHHHh--cCCcEEEEEeCCC
Q 003890 279 LKKTILRDYL--TNKKYFIVLDDVF 301 (788)
Q Consensus 279 ~~~~~l~~~l--~~kr~LlVLDdvw 301 (788)
...-.+.+++ +||.+|+++||+-
T Consensus 145 ~~a~~~AEyfr~~g~~Vll~~Dslt 169 (326)
T cd01136 145 YTATAIAEYFRDQGKDVLLLMDSLT 169 (326)
T ss_pred HHHHHHHHHHHHcCCCeEEEeccch
Confidence 1222334444 6899999999985
No 369
>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.
Probab=94.25 E-value=0.12 Score=52.96 Aligned_cols=103 Identities=14% Similarity=0.164 Sum_probs=57.4
Q ss_pred cEEEEEEcCCCChHHHHH-HHHHcccCcccccce-eEEEEeCCCCC-hHHHHHHHHHHcCCCCCCc--ccccCCHHH---
Q 003890 208 LSVVAILNGSGFDKTAFA-ADTYNNNHIKFYFDC-LAWVRVSIAYD-SGKILDDIIKSVMPPSRVS--VIIGEDYKL--- 279 (788)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa-~~v~~~~~~~~~F~~-~~wv~vs~~~~-~~~~~~~il~~l~~~~~~~--~~~~~~~~~--- 279 (788)
=..++|.|..|+|||+|| ..+.+. . .-+. ++++-+++... +.++.+.+...-......- ...+.....
T Consensus 69 GQr~~Ifg~~g~GKt~L~l~~i~~~--~--~~~v~~V~~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~ 144 (274)
T cd01132 69 GQRELIIGDRQTGKTAIAIDTIINQ--K--GKKVYCIYVAIGQKASTVAQVVKTLEEHGAMEYTIVVAATASDPAPLQYL 144 (274)
T ss_pred CCEEEeeCCCCCCccHHHHHHHHHh--c--CCCeEEEEEecccchHHHHHHHHHHHhcCccceeEEEEeCCCCchhHHHH
Confidence 357899999999999996 666652 1 2234 46677777654 5566666654321111000 000111111
Q ss_pred ---HHHHHHHHh--cCCcEEEEEeCCCCChhhHHHHhhhc
Q 003890 280 ---KKTILRDYL--TNKKYFIVLDDVFNDSDIWDDLEQVL 314 (788)
Q Consensus 280 ---~~~~l~~~l--~~kr~LlVLDdvw~~~~~~~~l~~~l 314 (788)
..-.+.+++ +|+.+|+|+||+-.-...|.++...+
T Consensus 145 a~~~a~aiAE~fr~~G~~Vlvl~DslTr~A~A~rEisl~~ 184 (274)
T cd01132 145 APYTGCAMGEYFMDNGKHALIIYDDLSKQAVAYRQMSLLL 184 (274)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEEcChHHHHHHHHHHHHhc
Confidence 122333333 58999999999962345666665444
No 370
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=94.25 E-value=0.058 Score=52.69 Aligned_cols=96 Identities=15% Similarity=0.113 Sum_probs=50.4
Q ss_pred cEEEEEEcCCCChHHHHHHHHHcccCcccccceeEEEEeCCCCChHHHHHHHHHHcCCCCCCcccccCCHHHHHHHHHHH
Q 003890 208 LSVVAILNGSGFDKTAFAADTYNNNHIKFYFDCLAWVRVSIAYDSGKILDDIIKSVMPPSRVSVIIGEDYKLKKTILRDY 287 (788)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~~ 287 (788)
-..+.|+|..|.||||+++.+.. .+...- .++-+.-....... ..... ++..... ...........+.++..
T Consensus 25 g~~i~I~G~tGSGKTTll~aL~~--~i~~~~-~~i~ied~~E~~~~--~~~~~-~~~~~~~--~~~~~~~~~~~~~l~~~ 96 (186)
T cd01130 25 RKNILISGGTGSGKTTLLNALLA--FIPPDE-RIITIEDTAELQLP--HPNWV-RLVTRPG--NVEGSGEVTMADLLRSA 96 (186)
T ss_pred CCEEEEECCCCCCHHHHHHHHHh--hcCCCC-CEEEECCccccCCC--CCCEE-EEEEecC--CCCCCCccCHHHHHHHH
Confidence 45899999999999999999887 232211 12222111111100 00000 0000000 00111223455666677
Q ss_pred hcCCcEEEEEeCCCCChhhHHHHhh
Q 003890 288 LTNKKYFIVLDDVFNDSDIWDDLEQ 312 (788)
Q Consensus 288 l~~kr~LlVLDdvw~~~~~~~~l~~ 312 (788)
++..+=.++++.+. +.+.|.-+..
T Consensus 97 lR~~pd~i~igEir-~~ea~~~~~a 120 (186)
T cd01130 97 LRMRPDRIIVGEVR-GGEALDLLQA 120 (186)
T ss_pred hccCCCEEEEEccC-cHHHHHHHHH
Confidence 77777888999998 7777765543
No 371
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=94.23 E-value=0.037 Score=54.06 Aligned_cols=24 Identities=17% Similarity=0.263 Sum_probs=21.9
Q ss_pred CcEEEEEEcCCCChHHHHHHHHHc
Q 003890 207 GLSVVAILNGSGFDKTAFAADTYN 230 (788)
Q Consensus 207 ~~~vi~I~G~gGiGKTtLa~~v~~ 230 (788)
...+|.|+|++|+||||+|+.+..
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~ 25 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVE 25 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 367999999999999999999986
No 372
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=94.22 E-value=0.11 Score=57.12 Aligned_cols=90 Identities=18% Similarity=0.201 Sum_probs=49.6
Q ss_pred cEEEEEEcCCCChHHHHHHHHHcccCcccccceeEEEEeCCCC-ChHHHHHHHHHHcCCCCCCc---ccccCCH-----H
Q 003890 208 LSVVAILNGSGFDKTAFAADTYNNNHIKFYFDCLAWVRVSIAY-DSGKILDDIIKSVMPPSRVS---VIIGEDY-----K 278 (788)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~~~~~il~~l~~~~~~~---~~~~~~~-----~ 278 (788)
-..++|+|..|+|||||++.+.... .. +..+.+.+.+.. .+.++.++.+..-......- ..+.... -
T Consensus 140 Gq~i~I~G~sG~GKTtLl~~I~~~~--~~--~~gvi~~iGer~~ev~~~~~~~l~~~~~~~tvvv~atsd~~~~~r~~a~ 215 (418)
T TIGR03498 140 GQRLGIFAGSGVGKSTLLSMLARNT--DA--DVVVIALVGERGREVREFLEDDLGEEGLKRSVVVVATSDESPLMRRQAA 215 (418)
T ss_pred CcEEEEECCCCCChHHHHHHHhCCC--CC--CEEEEEEEeeechHHHHHHHHhhhccccceeEEEEECCCCCHHHHHHHH
Confidence 4589999999999999999998732 21 222333344433 34455555444322111100 0011111 1
Q ss_pred HHHHHHHHHh--cCCcEEEEEeCCC
Q 003890 279 LKKTILRDYL--TNKKYFIVLDDVF 301 (788)
Q Consensus 279 ~~~~~l~~~l--~~kr~LlVLDdvw 301 (788)
..+..+.+++ +|+++|+++||+-
T Consensus 216 ~~a~~iAEyfrd~G~~Vll~~DslT 240 (418)
T TIGR03498 216 YTATAIAEYFRDQGKDVLLLMDSVT 240 (418)
T ss_pred HHHHHHHHHHHHcCCCEEEeccchh
Confidence 1222345555 6899999999995
No 373
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=94.20 E-value=0.029 Score=55.42 Aligned_cols=21 Identities=33% Similarity=0.536 Sum_probs=19.7
Q ss_pred EEEEEcCCCChHHHHHHHHHc
Q 003890 210 VVAILNGSGFDKTAFAADTYN 230 (788)
Q Consensus 210 vi~I~G~gGiGKTtLa~~v~~ 230 (788)
+|+|.|.+|+||||||+.+..
T Consensus 1 iigi~G~~GsGKSTl~~~l~~ 21 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIE 21 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999987
No 374
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=94.20 E-value=0.082 Score=54.90 Aligned_cols=89 Identities=18% Similarity=0.132 Sum_probs=48.2
Q ss_pred HHHHHHHHhcCCCCcEEEEEEcCCCChHHHHHHHHHcccCcccccceeEEEEeCCCCChHHHHHHHHHHcCCCCCCcccc
Q 003890 194 REELFDLLIEGPSGLSVVAILNGSGFDKTAFAADTYNNNHIKFYFDCLAWVRVSIAYDSGKILDDIIKSVMPPSRVSVII 273 (788)
Q Consensus 194 ~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~~l~~~~~~~~~~ 273 (788)
...+++.+... -+-+-++|..|+|||++++....... ...| ...-++.|.......+++-+-..+..... .
T Consensus 22 ~~~ll~~l~~~---~~pvLl~G~~GtGKT~li~~~l~~l~-~~~~-~~~~~~~s~~Tts~~~q~~ie~~l~k~~~----~ 92 (272)
T PF12775_consen 22 YSYLLDLLLSN---GRPVLLVGPSGTGKTSLIQNFLSSLD-SDKY-LVITINFSAQTTSNQLQKIIESKLEKRRG----R 92 (272)
T ss_dssp HHHHHHHHHHC---TEEEEEESSTTSSHHHHHHHHHHCST-TCCE-EEEEEES-TTHHHHHHHHCCCTTECECTT----E
T ss_pred HHHHHHHHHHc---CCcEEEECCCCCchhHHHHhhhccCC-cccc-ceeEeeccCCCCHHHHHHHHhhcEEcCCC----C
Confidence 35566666654 34567999999999999999886311 1111 13344555544444443322112211111 0
Q ss_pred cCCHHHHHHHHHHHhcCCcEEEEEeCCC
Q 003890 274 GEDYKLKKTILRDYLTNKKYFIVLDDVF 301 (788)
Q Consensus 274 ~~~~~~~~~~l~~~l~~kr~LlVLDdvw 301 (788)
... --.+|+.++.+||+-
T Consensus 93 ~~g----------P~~~k~lv~fiDDlN 110 (272)
T PF12775_consen 93 VYG----------PPGGKKLVLFIDDLN 110 (272)
T ss_dssp EEE----------EESSSEEEEEEETTT
T ss_pred CCC----------CCCCcEEEEEecccC
Confidence 000 013689999999994
No 375
>PRK00625 shikimate kinase; Provisional
Probab=94.20 E-value=0.033 Score=53.53 Aligned_cols=21 Identities=14% Similarity=0.113 Sum_probs=19.4
Q ss_pred EEEEEcCCCChHHHHHHHHHc
Q 003890 210 VVAILNGSGFDKTAFAADTYN 230 (788)
Q Consensus 210 vi~I~G~gGiGKTtLa~~v~~ 230 (788)
.|.++||+|+||||+++.+.+
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~ 22 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAK 22 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 378999999999999999987
No 376
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=94.19 E-value=0.075 Score=61.92 Aligned_cols=44 Identities=14% Similarity=0.128 Sum_probs=36.0
Q ss_pred CCcccchhcHHHHHHHHhcCCCCcEEEEEEcCCCChHHHHHHHHHc
Q 003890 185 LDISEFERGREELFDLLIEGPSGLSVVAILNGSGFDKTAFAADTYN 230 (788)
Q Consensus 185 ~~~vGr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 230 (788)
+-++||+.+++++++.|.-...+..|+ +|.+|+|||++|.-++.
T Consensus 170 DPvIGRd~EI~r~iqIL~RR~KNNPvL--iGEpGVGKTAIvEGLA~ 213 (786)
T COG0542 170 DPVIGRDEEIRRTIQILSRRTKNNPVL--VGEPGVGKTAIVEGLAQ 213 (786)
T ss_pred CCCcChHHHHHHHHHHHhccCCCCCeE--ecCCCCCHHHHHHHHHH
Confidence 558999999999999998776555554 89999999998665554
No 377
>PRK00279 adk adenylate kinase; Reviewed
Probab=94.19 E-value=0.37 Score=48.22 Aligned_cols=21 Identities=19% Similarity=0.083 Sum_probs=19.2
Q ss_pred EEEEEcCCCChHHHHHHHHHc
Q 003890 210 VVAILNGSGFDKTAFAADTYN 230 (788)
Q Consensus 210 vi~I~G~gGiGKTtLa~~v~~ 230 (788)
.|.|+|++|+||||+|+.+..
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~ 22 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAE 22 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999987
No 378
>PTZ00185 ATPase alpha subunit; Provisional
Probab=94.18 E-value=0.2 Score=55.56 Aligned_cols=94 Identities=14% Similarity=0.104 Sum_probs=52.9
Q ss_pred cEEEEEEcCCCChHHHHH-HHHHcccCc-----ccccceeEEEEeCCCCChHHHHHHHHHHcCCCCCCcc----cccCCH
Q 003890 208 LSVVAILNGSGFDKTAFA-ADTYNNNHI-----KFYFDCLAWVRVSIAYDSGKILDDIIKSVMPPSRVSV----IIGEDY 277 (788)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa-~~v~~~~~~-----~~~F~~~~wv~vs~~~~~~~~~~~il~~l~~~~~~~~----~~~~~~ 277 (788)
-..++|.|..|+|||+|| -.+.+...+ .++-..++++-+++....-.-+.+.+++-+.-..... .+....
T Consensus 189 GQR~lIfGd~GtGKTtLAld~IinQ~~~~~~~~~~~~~v~VyvaIGeR~rEV~ei~~~L~e~GaL~~TvVV~AtAdep~~ 268 (574)
T PTZ00185 189 GQRELIVGDRQTGKTSIAVSTIINQVRINQQILSKNAVISIYVSIGQRCSNVARIHRLLRSYGALRYTTVMAATAAEPAG 268 (574)
T ss_pred CCEEEeecCCCCChHHHHHHHHHhhhhhccccccCCCCEEEEEEeccchHHHHHHHHHHHhcCCccceEEEEECCCCCHH
Confidence 357899999999999997 555664322 1233458888888886533224444444331111000 001011
Q ss_pred H-----HHHHHHHHHh--cCCcEEEEEeCCC
Q 003890 278 K-----LKKTILRDYL--TNKKYFIVLDDVF 301 (788)
Q Consensus 278 ~-----~~~~~l~~~l--~~kr~LlVLDdvw 301 (788)
. -....+.+++ +|+.+|+|+||+-
T Consensus 269 ~r~~Apy~a~tiAEYFrd~GkdVLiv~DDLT 299 (574)
T PTZ00185 269 LQYLAPYSGVTMGEYFMNRGRHCLCVYDDLS 299 (574)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCEEEEEcCch
Confidence 1 0122334444 5899999999995
No 379
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=94.18 E-value=0.095 Score=60.44 Aligned_cols=47 Identities=17% Similarity=-0.020 Sum_probs=38.6
Q ss_pred CCcccchhcHHHHHHHHhcCCCCcEEEEEEcCCCChHHHHHHHHHcc
Q 003890 185 LDISEFERGREELFDLLIEGPSGLSVVAILNGSGFDKTAFAADTYNN 231 (788)
Q Consensus 185 ~~~vGr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 231 (788)
..++|....+.++.+.+..-...-..|-|+|..|+|||++|+.++..
T Consensus 196 ~~liG~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~lA~~ih~~ 242 (534)
T TIGR01817 196 DGIIGKSPAMRQVVDQARVVARSNSTVLLRGESGTGKELIAKAIHYL 242 (534)
T ss_pred CceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCccHHHHHHHHHHh
Confidence 67999999999998888654333445679999999999999999973
No 380
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=94.17 E-value=0.31 Score=47.92 Aligned_cols=24 Identities=21% Similarity=0.209 Sum_probs=21.7
Q ss_pred cEEEEEEcCCCChHHHHHHHHHcc
Q 003890 208 LSVVAILNGSGFDKTAFAADTYNN 231 (788)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~~ 231 (788)
-.+++|.|..|.|||||.+.+..-
T Consensus 35 Ge~~~l~G~nGsGKStLl~~i~Gl 58 (194)
T cd03213 35 GELTAIMGPSGAGKSTLLNALAGR 58 (194)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999999873
No 381
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=94.16 E-value=0.46 Score=47.84 Aligned_cols=24 Identities=21% Similarity=0.151 Sum_probs=21.5
Q ss_pred cEEEEEEcCCCChHHHHHHHHHcc
Q 003890 208 LSVVAILNGSGFDKTAFAADTYNN 231 (788)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~~ 231 (788)
-.+++|+|..|.|||||.+.+...
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~l~G~ 49 (223)
T TIGR03740 26 NSVYGLLGPNGAGKSTLLKMITGI 49 (223)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 458999999999999999999873
No 382
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=94.15 E-value=0.22 Score=49.09 Aligned_cols=22 Identities=14% Similarity=0.024 Sum_probs=20.4
Q ss_pred EEEEEEcCCCChHHHHHHHHHc
Q 003890 209 SVVAILNGSGFDKTAFAADTYN 230 (788)
Q Consensus 209 ~vi~I~G~gGiGKTtLa~~v~~ 230 (788)
++++|+|..|.|||||.+.+..
T Consensus 26 ~~~~ltGpNg~GKSTllr~i~~ 47 (199)
T cd03283 26 NGILITGSNMSGKSTFLRTIGV 47 (199)
T ss_pred cEEEEECCCCCChHHHHHHHHH
Confidence 7999999999999999998875
No 383
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=94.14 E-value=0.073 Score=52.94 Aligned_cols=87 Identities=16% Similarity=0.262 Sum_probs=51.7
Q ss_pred EEEEEEcCCCChHHHHHHHHHcccCcccccceeEEEEeCCCC-ChHHHHHHHHHHcCCCCCCc--ccccCC---------
Q 003890 209 SVVAILNGSGFDKTAFAADTYNNNHIKFYFDCLAWVRVSIAY-DSGKILDDIIKSVMPPSRVS--VIIGED--------- 276 (788)
Q Consensus 209 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~~~~~il~~l~~~~~~~--~~~~~~--------- 276 (788)
..++|+|.+|+|||+|+..+.++.. =+.++++-+++.. .+.++.+++...-......- ......
T Consensus 16 qr~~I~g~~g~GKt~Ll~~i~~~~~----~d~~V~~~iGer~~Ev~~~~~~~~~~~~~~~t~vv~~t~~~~~~~r~~~~~ 91 (215)
T PF00006_consen 16 QRIGIFGGAGVGKTVLLQEIANNQD----ADVVVYALIGERGREVTEFIEELKGEGALERTVVVAATSDEPPAARYRAPY 91 (215)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHCT----TTEEEEEEESECHHHHHHHHHHHHHTTGGGGEEEEEEETTS-HHHHHHHHH
T ss_pred CEEEEEcCcccccchhhHHHHhccc----ccceeeeeccccchhHHHHHHHHhhcccccccccccccchhhHHHHhhhhc
Confidence 5789999999999999999988532 2334888887764 45566665543311110000 000111
Q ss_pred -HHHHHHHHHHHhcCCcEEEEEeCCC
Q 003890 277 -YKLKKTILRDYLTNKKYFIVLDDVF 301 (788)
Q Consensus 277 -~~~~~~~l~~~l~~kr~LlVLDdvw 301 (788)
.-..++.++. +||.+|+++||+-
T Consensus 92 ~a~t~AEyfrd--~G~dVlli~Dslt 115 (215)
T PF00006_consen 92 TALTIAEYFRD--QGKDVLLIIDSLT 115 (215)
T ss_dssp HHHHHHHHHHH--TTSEEEEEEETHH
T ss_pred cchhhhHHHhh--cCCceeehhhhhH
Confidence 1122333333 6899999999994
No 384
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=94.12 E-value=0.38 Score=49.47 Aligned_cols=24 Identities=13% Similarity=0.188 Sum_probs=21.7
Q ss_pred cEEEEEEcCCCChHHHHHHHHHcc
Q 003890 208 LSVVAILNGSGFDKTAFAADTYNN 231 (788)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~~ 231 (788)
-.+++|+|..|.|||||++.++.-
T Consensus 30 Ge~~~I~G~NGsGKSTLl~~i~Gl 53 (251)
T PRK09544 30 GKILTLLGPNGAGKSTLVRVVLGL 53 (251)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999999974
No 385
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.12 E-value=0.56 Score=47.66 Aligned_cols=24 Identities=25% Similarity=0.169 Sum_probs=21.7
Q ss_pred cEEEEEEcCCCChHHHHHHHHHcc
Q 003890 208 LSVVAILNGSGFDKTAFAADTYNN 231 (788)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~~ 231 (788)
-.+++|+|..|.|||||.+.+..-
T Consensus 27 Ge~~~l~G~nGsGKSTLl~~i~Gl 50 (236)
T cd03253 27 GKKVAIVGPSGSGKSTILRLLFRF 50 (236)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcc
Confidence 468999999999999999999874
No 386
>PRK05688 fliI flagellum-specific ATP synthase; Validated
Probab=94.11 E-value=0.16 Score=56.07 Aligned_cols=90 Identities=12% Similarity=0.145 Sum_probs=50.1
Q ss_pred cEEEEEEcCCCChHHHHHHHHHcccCcccccceeEEEEeCCCC-ChHHHHHHHHHHcCCCCCCcc---cccCCH-----H
Q 003890 208 LSVVAILNGSGFDKTAFAADTYNNNHIKFYFDCLAWVRVSIAY-DSGKILDDIIKSVMPPSRVSV---IIGEDY-----K 278 (788)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~~~~~il~~l~~~~~~~~---~~~~~~-----~ 278 (788)
-..++|+|..|+|||||++.+.... . .+.++...+.... ++.++...+...-......-. .+.... .
T Consensus 168 GqrigI~G~sG~GKSTLl~~I~g~~---~-~dv~V~g~Ig~rg~ev~~~~~~~~~~~~l~rsvvv~atsd~~p~~r~~a~ 243 (451)
T PRK05688 168 GQRLGLFAGTGVGKSVLLGMMTRFT---E-ADIIVVGLIGERGREVKEFIEHILGEEGLKRSVVVASPADDAPLMRLRAA 243 (451)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC---C-CCEEEEEEeCcCcHhHHHHHHHHhhcCCccEEEEEEECCCCCHHHHHHHH
Confidence 4579999999999999999998732 1 2233444454443 344555444443222111000 011111 1
Q ss_pred HHHHHHHHHh--cCCcEEEEEeCCC
Q 003890 279 LKKTILRDYL--TNKKYFIVLDDVF 301 (788)
Q Consensus 279 ~~~~~l~~~l--~~kr~LlVLDdvw 301 (788)
..+..+.+++ +|+++|+++||+-
T Consensus 244 ~~a~aiAEyfrd~G~~VLl~~DslT 268 (451)
T PRK05688 244 MYCTRIAEYFRDKGKNVLLLMDSLT 268 (451)
T ss_pred HHHHHHHHHHHHCCCCEEEEecchh
Confidence 1122344555 6899999999995
No 387
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=94.09 E-value=0.14 Score=56.18 Aligned_cols=90 Identities=14% Similarity=0.151 Sum_probs=51.0
Q ss_pred cEEEEEEcCCCChHHHHHHHHHcccCcccccceeEEEEeCCCC-ChHHHHHHHHHHcCCCCCC---cccccCCHH-----
Q 003890 208 LSVVAILNGSGFDKTAFAADTYNNNHIKFYFDCLAWVRVSIAY-DSGKILDDIIKSVMPPSRV---SVIIGEDYK----- 278 (788)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~~~~~il~~l~~~~~~---~~~~~~~~~----- 278 (788)
-..++|+|..|+|||||++.+.+.. +.+..+++.+++.. .+.+.+.+....=...... ...+....+
T Consensus 155 GqrigI~G~sG~GKSTLL~~I~~~~----~~d~~vi~~iGeRgrEv~efl~~~~~~~~~~rtv~vv~tsd~p~~~r~~a~ 230 (433)
T PRK07594 155 GQRVGIFSAPGVGKSTLLAMLCNAP----DADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRAL 230 (433)
T ss_pred CCEEEEECCCCCCccHHHHHhcCCC----CCCEEEEEEECCCchHHHHHHHHhhccCCcceEEEEEECCCCCHHHHHHHH
Confidence 4588999999999999999998732 23445666666543 3445555443211000000 000111111
Q ss_pred HHHHHHHHHh--cCCcEEEEEeCCC
Q 003890 279 LKKTILRDYL--TNKKYFIVLDDVF 301 (788)
Q Consensus 279 ~~~~~l~~~l--~~kr~LlVLDdvw 301 (788)
...-.+.+++ +|+++|+++||+-
T Consensus 231 ~~a~tiAEyfrd~G~~VLl~~Dslt 255 (433)
T PRK07594 231 FVATTIAEFFRDNGKRVVLLADSLT 255 (433)
T ss_pred HHHHHHHHHHHHCCCcEEEEEeCHH
Confidence 1122344555 5899999999995
No 388
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=94.09 E-value=0.15 Score=61.15 Aligned_cols=47 Identities=21% Similarity=0.148 Sum_probs=36.7
Q ss_pred CCcccchhcHHHHHHHHhcC-----------CCCcEEEEEEcCCCChHHHHHHHHHcc
Q 003890 185 LDISEFERGREELFDLLIEG-----------PSGLSVVAILNGSGFDKTAFAADTYNN 231 (788)
Q Consensus 185 ~~~vGr~~~~~~i~~~L~~~-----------~~~~~vi~I~G~gGiGKTtLa~~v~~~ 231 (788)
.++.|.+..++.+.+.+... -...+-+-++|++|+|||++|+.+.+.
T Consensus 453 ~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e 510 (733)
T TIGR01243 453 SDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATE 510 (733)
T ss_pred hhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHh
Confidence 77889998888887776421 123455788999999999999999983
No 389
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=94.07 E-value=0.46 Score=48.93 Aligned_cols=24 Identities=13% Similarity=0.124 Sum_probs=21.6
Q ss_pred cEEEEEEcCCCChHHHHHHHHHcc
Q 003890 208 LSVVAILNGSGFDKTAFAADTYNN 231 (788)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~~ 231 (788)
-.+++|+|..|.|||||.+.++.-
T Consensus 26 Ge~~~IvG~nGsGKSTLlk~l~Gl 49 (255)
T cd03236 26 GQVLGLVGPNGIGKSTALKILAGK 49 (255)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 459999999999999999998873
No 390
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.07 E-value=0.72 Score=46.60 Aligned_cols=24 Identities=25% Similarity=0.155 Sum_probs=21.4
Q ss_pred cEEEEEEcCCCChHHHHHHHHHcc
Q 003890 208 LSVVAILNGSGFDKTAFAADTYNN 231 (788)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~~ 231 (788)
-.+++|+|..|.|||||.+.+..-
T Consensus 29 G~~~~i~G~nGsGKSTLl~~l~G~ 52 (229)
T cd03254 29 GETVAIVGPTGAGKTTLINLLMRF 52 (229)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 358999999999999999999863
No 391
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=94.06 E-value=0.4 Score=48.37 Aligned_cols=24 Identities=8% Similarity=0.048 Sum_probs=21.8
Q ss_pred cEEEEEEcCCCChHHHHHHHHHcc
Q 003890 208 LSVVAILNGSGFDKTAFAADTYNN 231 (788)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~~ 231 (788)
-.+++|+|..|+|||||++.+...
T Consensus 48 Ge~~~i~G~nGsGKSTLl~~l~G~ 71 (224)
T cd03220 48 GERIGLIGRNGAGKSTLLRLLAGI 71 (224)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999999974
No 392
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=94.04 E-value=0.069 Score=49.28 Aligned_cols=41 Identities=15% Similarity=0.195 Sum_probs=29.9
Q ss_pred EEEEcCCCChHHHHHHHHHcccCcccccce-eEEEEeCCCCChHHHHH
Q 003890 211 VAILNGSGFDKTAFAADTYNNNHIKFYFDC-LAWVRVSIAYDSGKILD 257 (788)
Q Consensus 211 i~I~G~gGiGKTtLa~~v~~~~~~~~~F~~-~~wv~vs~~~~~~~~~~ 257 (788)
|-++|.+|+|||+||+.++.- . .. ..-+.++...+..++..
T Consensus 2 vlL~G~~G~GKt~l~~~la~~--~----~~~~~~i~~~~~~~~~dl~g 43 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAAL--L----GRPVIRINCSSDTTEEDLIG 43 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHH--H----TCEEEEEE-TTTSTHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHH--h----hcceEEEEecccccccccee
Confidence 568999999999999999983 3 32 34467777777766553
No 393
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=94.04 E-value=0.034 Score=54.05 Aligned_cols=22 Identities=23% Similarity=0.093 Sum_probs=20.3
Q ss_pred EEEEEcCCCChHHHHHHHHHcc
Q 003890 210 VVAILNGSGFDKTAFAADTYNN 231 (788)
Q Consensus 210 vi~I~G~gGiGKTtLa~~v~~~ 231 (788)
+|+|.|.+|+||||+|+.+...
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~ 22 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRI 22 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999983
No 394
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=94.03 E-value=0.48 Score=50.19 Aligned_cols=24 Identities=17% Similarity=0.088 Sum_probs=21.7
Q ss_pred cEEEEEEcCCCChHHHHHHHHHcc
Q 003890 208 LSVVAILNGSGFDKTAFAADTYNN 231 (788)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~~ 231 (788)
-.+++|+|..|.|||||.+.+...
T Consensus 28 Gei~~l~G~NGaGKTTLl~~l~Gl 51 (301)
T TIGR03522 28 GRIVGFLGPNGAGKSTTMKIITGY 51 (301)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999999874
No 395
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=93.97 E-value=0.34 Score=49.37 Aligned_cols=55 Identities=18% Similarity=0.189 Sum_probs=35.0
Q ss_pred HHhcCCCCcEEEEEEcCCCChHHHHHHHHHcccCcccccceeEEEEeCCCCChHHHHHH
Q 003890 200 LLIEGPSGLSVVAILNGSGFDKTAFAADTYNNNHIKFYFDCLAWVRVSIAYDSGKILDD 258 (788)
Q Consensus 200 ~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~ 258 (788)
.|..+=..-+++.|.|.+|+|||++|.++... .. ..=..++|++... ++..+.+.
T Consensus 13 ~l~GG~~~gs~~lI~G~pGsGKT~la~~~l~~-~~-~~ge~~lyvs~ee--~~~~i~~~ 67 (237)
T TIGR03877 13 ILHGGIPERNVVLLSGGPGTGKSIFSQQFLWN-GL-QMGEPGIYVALEE--HPVQVRRN 67 (237)
T ss_pred HhcCCCcCCeEEEEEcCCCCCHHHHHHHHHHH-HH-HcCCcEEEEEeeC--CHHHHHHH
Confidence 33333245689999999999999999875442 12 2234578887654 34445444
No 396
>PRK12678 transcription termination factor Rho; Provisional
Probab=93.96 E-value=0.089 Score=58.83 Aligned_cols=103 Identities=16% Similarity=0.072 Sum_probs=53.9
Q ss_pred HHHHHHhcCCCCcEEEEEEcCCCChHHHHHHHHHcccCccc-ccce-eEEEEeCCCCC-hHHHHHHHHHHcCCCCCCc-c
Q 003890 196 ELFDLLIEGPSGLSVVAILNGSGFDKTAFAADTYNNNHIKF-YFDC-LAWVRVSIAYD-SGKILDDIIKSVMPPSRVS-V 271 (788)
Q Consensus 196 ~i~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-~F~~-~~wv~vs~~~~-~~~~~~~il~~l~~~~~~~-~ 271 (788)
.+++.|..-. .-....|+|.+|+|||||++.+.+ .+.. +=++ ++.+-|.+.+. +.++.+.+-..+-...... .
T Consensus 405 RvIDll~PIG-kGQR~LIvgpp~aGKTtLL~~IAn--~i~~n~~~~~~ivvLIgERpeEVtdm~rsVkgeVVasT~D~p~ 481 (672)
T PRK12678 405 RVIDLIMPIG-KGQRGLIVSPPKAGKTTILQNIAN--AITTNNPECHLMVVLVDERPEEVTDMQRSVKGEVIASTFDRPP 481 (672)
T ss_pred eeeeeecccc-cCCEeEEeCCCCCCHHHHHHHHHH--HHhhcCCCeEEEEEEEeCchhhHHHHHHhccceEEEECCCCCH
Confidence 4455554321 234678999999999999999998 3322 2233 33455666543 3333333211111111100 0
Q ss_pred cccCCHHHHHHHHHHHh--cCCcEEEEEeCCC
Q 003890 272 IIGEDYKLKKTILRDYL--TNKKYFIVLDDVF 301 (788)
Q Consensus 272 ~~~~~~~~~~~~l~~~l--~~kr~LlVLDdvw 301 (788)
........+.-.+.++| +|+.+||++|++-
T Consensus 482 ~~~~~~a~~ai~~Ae~fre~G~dVlillDSlT 513 (672)
T PRK12678 482 SDHTTVAELAIERAKRLVELGKDVVVLLDSIT 513 (672)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCEEEEEeCch
Confidence 01111222333444555 6899999999995
No 397
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=93.96 E-value=0.13 Score=56.66 Aligned_cols=46 Identities=17% Similarity=0.100 Sum_probs=34.7
Q ss_pred CCcccchhcHHHHHHHHhcC--------------CCCcEEEEEEcCCCChHHHHHHHHHc
Q 003890 185 LDISEFERGREELFDLLIEG--------------PSGLSVVAILNGSGFDKTAFAADTYN 230 (788)
Q Consensus 185 ~~~vGr~~~~~~i~~~L~~~--------------~~~~~vi~I~G~gGiGKTtLa~~v~~ 230 (788)
..++|.+..++.+...+... ....+-+-++|.+|+|||++|+.+..
T Consensus 71 ~~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~ 130 (412)
T PRK05342 71 QYVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLAR 130 (412)
T ss_pred hHeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHH
Confidence 45899999988876555211 01235688999999999999999987
No 398
>TIGR01040 V-ATPase_V1_B V-type (H+)-ATPase V1, B subunit. This models eukaryotic vacuolar (H+)-ATPase that is responsible for acidifying cellular compartments. This enzyme shares extensive sequence similarity with archaeal ATP synthase.
Probab=93.94 E-value=0.15 Score=55.91 Aligned_cols=94 Identities=11% Similarity=0.173 Sum_probs=57.0
Q ss_pred cEEEEEEcCCCChHHHHHHHHHcccCccc--ccc---------eeEEEEeCCCCChHHHHHHHHHHcC-CCCCCc---cc
Q 003890 208 LSVVAILNGSGFDKTAFAADTYNNNHIKF--YFD---------CLAWVRVSIAYDSGKILDDIIKSVM-PPSRVS---VI 272 (788)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~--~F~---------~~~wv~vs~~~~~~~~~~~il~~l~-~~~~~~---~~ 272 (788)
-..++|.|-+|+|||||+.++.+..+... -.| .++++-+++.....+.+.+.+..-+ .....- ..
T Consensus 141 GQRigIfagsGvGKs~L~~~i~~~~~~~~~~~aD~~~~~~~~~v~V~a~IGerre~~efi~~~l~~~g~l~rtvvv~ats 220 (466)
T TIGR01040 141 GQKIPIFSAAGLPHNEIAAQICRQAGLVKLPTKDVHDGHEDNFAIVFAAMGVNMETARFFKQDFEENGSMERVCLFLNLA 220 (466)
T ss_pred CCeeeeecCCCCCHHHHHHHHHHhhccccccccccccccCCceEEEEEEeeeehHHHHHHHHHHHhcCCcceEEEEEECC
Confidence 45789999999999999999887543100 012 4677778888666666666666544 211100 00
Q ss_pred ccCCH-----HHHHHHHHHHhc---CCcEEEEEeCCC
Q 003890 273 IGEDY-----KLKKTILRDYLT---NKKYFIVLDDVF 301 (788)
Q Consensus 273 ~~~~~-----~~~~~~l~~~l~---~kr~LlVLDdvw 301 (788)
+.... -..+-.+.++++ |+++|+++||+-
T Consensus 221 d~p~~~R~~a~~~a~tiAEyfr~~~G~~VLl~~DslT 257 (466)
T TIGR01040 221 NDPTIERIITPRLALTTAEYLAYQCEKHVLVILTDMS 257 (466)
T ss_pred CCCHHHHHHHHhhhHHHHHHHHHhcCCcEEEeccChH
Confidence 11111 111223556664 699999999995
No 399
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=93.94 E-value=0.42 Score=48.69 Aligned_cols=24 Identities=21% Similarity=0.152 Sum_probs=21.8
Q ss_pred cEEEEEEcCCCChHHHHHHHHHcc
Q 003890 208 LSVVAILNGSGFDKTAFAADTYNN 231 (788)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~~ 231 (788)
-.+++|+|..|.|||||++.+..-
T Consensus 29 Ge~~~l~G~nGsGKSTLl~~i~G~ 52 (238)
T cd03249 29 GKTVALVGSSGCGKSTVVSLLERF 52 (238)
T ss_pred CCEEEEEeCCCCCHHHHHHHHhcc
Confidence 469999999999999999999874
No 400
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=93.93 E-value=0.042 Score=56.81 Aligned_cols=23 Identities=13% Similarity=0.021 Sum_probs=18.2
Q ss_pred EEEEEEcCCCChHHHHHHHHHcc
Q 003890 209 SVVAILNGSGFDKTAFAADTYNN 231 (788)
Q Consensus 209 ~vi~I~G~gGiGKTtLa~~v~~~ 231 (788)
..|.|.|.+|+||||+|+.+...
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~ 24 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKY 24 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHH
T ss_pred EEEEEEcCCCCcHHHHHHHHHHH
Confidence 46889999999999999999883
No 401
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=93.93 E-value=0.018 Score=65.50 Aligned_cols=198 Identities=23% Similarity=0.146 Sum_probs=101.9
Q ss_pred CCCccEEEecCCC-Ccc--cChhhcCCCCCcEEEccCC--CCcccc----hhhhcccccceeeccCcc-CCCCCcCCc-C
Q 003890 570 LFHLKYLKLNIPS-LKC--LPSLLCTLLNLQTLEMPSS--YVDQSP----EDIWMMQKLMHLNFGSIT-LPAPPKNYS-S 638 (788)
Q Consensus 570 L~~L~~L~L~~~~-i~~--lp~~i~~L~~L~~L~L~~~--~l~~lp----~~l~~L~~L~~L~l~~~~-~~~~i~~~~-~ 638 (788)
.+.|+.|.+.++. +.. +-.....+++|+.|++++| .....+ .....+++|+.|+++.+. +.......+ .
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~ 266 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS 266 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence 6778888887763 444 3345578889999999873 222222 224456788888887765 322111111 1
Q ss_pred ccccccccccccccc---cCc-cccCCCCCCCeEEEEccCCcChhcHHHhccCCCCCCEEEeecCCCCCcccccccCCCc
Q 003890 639 SLKNLIFISTLNPSS---CTP-DILGRLPNVQTLRISGDLSCYHSGVSKSLCELHKLECLKLVNERKPSRMVLYEYQFPP 714 (788)
Q Consensus 639 ~l~~L~~L~~~~~~~---~~~-~~l~~L~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~l~~~ 714 (788)
.+++|++|.+..+.. ..+ .....+++|++|++++|.......+.....++++|+.|.+.+... +
T Consensus 267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~~------------c 334 (482)
T KOG1947|consen 267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLNG------------C 334 (482)
T ss_pred hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcCC------------C
Confidence 255677776433322 111 123556777788887776322333444444556666655542111 2
Q ss_pred cccccc-cccccc-c--cc-CcccCCCCCcceEEEeccccccccccCCc-cccccccc--------------CCeeEecc
Q 003890 715 TDMARI-LSQLIR-Q--EF-VESEMSLPLLQLLDLEESDEEDDERSDIL-EILQDIND--------------FVHESEEA 774 (788)
Q Consensus 715 ~~L~~L-~~~l~~-~--~l-p~~l~~l~~L~~L~L~~~~l~~~~~~~~l-~~l~~L~~--------------L~~L~L~~ 774 (788)
+.++.+ ...+.. . .+ .-.+..+++|+.+.|..|..... .. -.+.++|+ |+.|+++.
T Consensus 335 ~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~~~~~----~~~~~l~gc~~l~~~l~~~~~~~~~l~~L~l~~ 410 (482)
T KOG1947|consen 335 PSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCGISDL----GLELSLRGCPNLTESLELRLCRSDSLRVLNLSD 410 (482)
T ss_pred ccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhhccCc----chHHHhcCCcccchHHHHHhccCCccceEeccc
Confidence 333333 111100 0 11 11233566777777776664332 21 22333443 57888888
Q ss_pred cCchhhhhh
Q 003890 775 IDTFFINIM 783 (788)
Q Consensus 775 ~~~l~~~~~ 783 (788)
|...+...+
T Consensus 411 ~~~~t~~~l 419 (482)
T KOG1947|consen 411 CRLVTDKGL 419 (482)
T ss_pred Cccccccch
Confidence 876665443
No 402
>TIGR01041 ATP_syn_B_arch ATP synthase archaeal, B subunit. Archaeal ATP synthase shares extensive sequence similarity with eukaryotic and prokaryotic V-type (H+)-ATPases.
Probab=93.92 E-value=0.15 Score=56.54 Aligned_cols=94 Identities=15% Similarity=0.224 Sum_probs=55.6
Q ss_pred cEEEEEEcCCCChHHHHHHHHHcccCcccccc--eeEEEEeCCCCC-hHHHHHHHHHHcCCCCCCcc---cccCC-----
Q 003890 208 LSVVAILNGSGFDKTAFAADTYNNNHIKFYFD--CLAWVRVSIAYD-SGKILDDIIKSVMPPSRVSV---IIGED----- 276 (788)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~--~~~wv~vs~~~~-~~~~~~~il~~l~~~~~~~~---~~~~~----- 276 (788)
=..++|.|..|+|||||+.++.+.....+.+. .++++-+++... +.++...+...=......-. .+...
T Consensus 141 GQR~gIfgg~G~GKs~L~~~ia~~~~ad~~~~~~v~V~~~iGERgrEv~efi~~~~~~~~l~rtvvv~atsd~p~~~R~~ 220 (458)
T TIGR01041 141 GQKLPIFSGSGLPHNELAAQIARQATVRGEESEFAVVFAAMGITYEEANFFMKDFEETGALERAVVFLNLADDPAVERIV 220 (458)
T ss_pred CCEEEeeCCCCCCHHHHHHHHHHhhcccCCCCceEEEEEEccccchHHHHHHHHHHhcCCcceEEEEEECCCCCHHHHHH
Confidence 35789999999999999999888544332222 467777777654 55666666543211111000 00001
Q ss_pred HHHHHHHHHHHhc---CCcEEEEEeCCC
Q 003890 277 YKLKKTILRDYLT---NKKYFIVLDDVF 301 (788)
Q Consensus 277 ~~~~~~~l~~~l~---~kr~LlVLDdvw 301 (788)
.-.....+.++++ |+++|+++||+-
T Consensus 221 a~~~a~tiAEyfr~d~G~~VLli~DslT 248 (458)
T TIGR01041 221 TPRMALTAAEYLAFEKDMHVLVILTDMT 248 (458)
T ss_pred HHHHHHHHHHHHHHccCCcEEEEEcChh
Confidence 1112223556664 789999999995
No 403
>TIGR03305 alt_F1F0_F1_bet alternate F1F0 ATPase, F1 subunit beta. A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 beta subunit of this apparent second ATP synthase.
Probab=93.92 E-value=0.098 Score=57.58 Aligned_cols=93 Identities=10% Similarity=0.195 Sum_probs=56.5
Q ss_pred cEEEEEEcCCCChHHHHHHHHHcccCcccccceeEEEEeCCCCC-hHHHHHHHHHHcCCCCCCc---ccccCC-----HH
Q 003890 208 LSVVAILNGSGFDKTAFAADTYNNNHIKFYFDCLAWVRVSIAYD-SGKILDDIIKSVMPPSRVS---VIIGED-----YK 278 (788)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~-~~~~~~~il~~l~~~~~~~---~~~~~~-----~~ 278 (788)
-..++|.|.+|+|||+|+.++..+.. +.+-+.++|+-+++... +.++.+++...-......- ..+... .-
T Consensus 138 GQr~~Ifg~~G~GKt~l~~~~~~~~~-~~~~~v~V~~~iGeR~rEv~e~~~~~~~~~~l~rtvvv~~ts~~~~~~r~~~~ 216 (449)
T TIGR03305 138 GGKAGLFGGAGVGKTVLLTEMIHNMV-GQHQGVSIFCGIGERCREGEELYREMKEAGVLDNTVMVFGQMNEPPGARFRVG 216 (449)
T ss_pred CCEEEeecCCCCChhHHHHHHHHHHH-hcCCCEEEEEEeccCcHHHHHHHHHHhhccccceEEEEEeCCCCCHHHHHHHH
Confidence 35789999999999999998876522 23336788888888764 4556666554311111000 000101 11
Q ss_pred HHHHHHHHHh---cCCcEEEEEeCCC
Q 003890 279 LKKTILRDYL---TNKKYFIVLDDVF 301 (788)
Q Consensus 279 ~~~~~l~~~l---~~kr~LlVLDdvw 301 (788)
..+-.+.+++ +|+++|+++||+-
T Consensus 217 ~~a~tiAEyfrd~~G~~VLl~~DslT 242 (449)
T TIGR03305 217 HTALTMAEYFRDDEKQDVLLLIDNIF 242 (449)
T ss_pred HHHHHHHHHHHHhcCCceEEEecChH
Confidence 2233455665 4699999999995
No 404
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=93.92 E-value=0.25 Score=54.23 Aligned_cols=23 Identities=26% Similarity=0.251 Sum_probs=20.4
Q ss_pred cEEEEEEcCCCChHHHHHHHHHc
Q 003890 208 LSVVAILNGSGFDKTAFAADTYN 230 (788)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~ 230 (788)
-.+++++|..|+||||++..+..
T Consensus 191 g~vi~lvGpnG~GKTTtlakLA~ 213 (420)
T PRK14721 191 GGVYALIGPTGVGKTTTTAKLAA 213 (420)
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 57999999999999999887765
No 405
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=93.92 E-value=0.17 Score=54.64 Aligned_cols=113 Identities=13% Similarity=0.078 Sum_probs=64.9
Q ss_pred cEEEEEEcCCCChHHHHHHHHHcccCcccccceeEEEEeCCCCChHHHHHHHHHHcCCCCCCcccccCCHHHHHHHHHHH
Q 003890 208 LSVVAILNGSGFDKTAFAADTYNNNHIKFYFDCLAWVRVSIAYDSGKILDDIIKSVMPPSRVSVIIGEDYKLKKTILRDY 287 (788)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~~ 287 (788)
-..|.|.|..|.||||+.+.+.. .+......+++.- .... +...... ..+-.... ...+.......++..
T Consensus 122 ~g~ili~G~tGSGKTT~l~al~~--~i~~~~~~~i~ti-Edp~--E~~~~~~-~~~i~q~e----vg~~~~~~~~~l~~~ 191 (343)
T TIGR01420 122 RGLILVTGPTGSGKSTTLASMID--YINKNAAGHIITI-EDPI--EYVHRNK-RSLINQRE----VGLDTLSFANALRAA 191 (343)
T ss_pred CcEEEEECCCCCCHHHHHHHHHH--hhCcCCCCEEEEE-cCCh--hhhccCc-cceEEccc----cCCCCcCHHHHHHHh
Confidence 46899999999999999999887 3444444455542 1111 1000000 00000000 111223456677888
Q ss_pred hcCCcEEEEEeCCCCChhhHHHHhhhcCCCCCCcEEEEecCChHHHh
Q 003890 288 LTNKKYFIVLDDVFNDSDIWDDLEQVLPDNQNGSRVLITVTDLDLLE 334 (788)
Q Consensus 288 l~~kr~LlVLDdvw~~~~~~~~l~~~l~~~~~gskIivTTR~~~v~~ 334 (788)
|+...=.|++|.+. +.+.+....... ..|-.|+.|+-..++..
T Consensus 192 lr~~pd~i~vgEir-d~~~~~~~l~aa---~tGh~v~~T~Ha~~~~~ 234 (343)
T TIGR01420 192 LREDPDVILIGEMR-DLETVELALTAA---ETGHLVFGTLHTNSAAQ 234 (343)
T ss_pred hccCCCEEEEeCCC-CHHHHHHHHHHH---HcCCcEEEEEcCCCHHH
Confidence 88888899999998 777665433322 23555777766655543
No 406
>CHL00195 ycf46 Ycf46; Provisional
Probab=93.89 E-value=0.26 Score=55.42 Aligned_cols=46 Identities=17% Similarity=0.089 Sum_probs=33.7
Q ss_pred CCcccchhcHHHHHHHHhc--------CCCCcEEEEEEcCCCChHHHHHHHHHc
Q 003890 185 LDISEFERGREELFDLLIE--------GPSGLSVVAILNGSGFDKTAFAADTYN 230 (788)
Q Consensus 185 ~~~vGr~~~~~~i~~~L~~--------~~~~~~vi~I~G~gGiGKTtLa~~v~~ 230 (788)
.++.|.+..++.+.+.... +-...+-|-++|++|+|||.+|+.+.+
T Consensus 228 ~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~ 281 (489)
T CHL00195 228 SDIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIAN 281 (489)
T ss_pred HHhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHH
Confidence 6788887777666543211 112356688999999999999999998
No 407
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=93.89 E-value=0.045 Score=53.10 Aligned_cols=23 Identities=13% Similarity=0.192 Sum_probs=20.7
Q ss_pred EEEEEEcCCCChHHHHHHHHHcc
Q 003890 209 SVVAILNGSGFDKTAFAADTYNN 231 (788)
Q Consensus 209 ~vi~I~G~gGiGKTtLa~~v~~~ 231 (788)
.++.|+|+.|+||||+++.+...
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~ 24 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARAR 24 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999998874
No 408
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=93.88 E-value=0.044 Score=53.15 Aligned_cols=24 Identities=21% Similarity=0.176 Sum_probs=22.2
Q ss_pred cEEEEEEcCCCChHHHHHHHHHcc
Q 003890 208 LSVVAILNGSGFDKTAFAADTYNN 231 (788)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~~ 231 (788)
..+|+|-||=|+||||||+.+.+.
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~ 27 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEH 27 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHH
Confidence 578999999999999999999993
No 409
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=93.88 E-value=0.035 Score=49.58 Aligned_cols=28 Identities=21% Similarity=0.242 Sum_probs=19.4
Q ss_pred EEEEcCCCChHHHHHHHHHcccCcccccce
Q 003890 211 VAILNGSGFDKTAFAADTYNNNHIKFYFDC 240 (788)
Q Consensus 211 i~I~G~gGiGKTtLa~~v~~~~~~~~~F~~ 240 (788)
|-|+|.+|+||||+|+.+.. .+...|..
T Consensus 2 vLleg~PG~GKT~la~~lA~--~~~~~f~R 29 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALAR--SLGLSFKR 29 (131)
T ss_dssp EEEES---HHHHHHHHHHHH--HTT--EEE
T ss_pred EeeECCCccHHHHHHHHHHH--HcCCceeE
Confidence 56899999999999999998 57777754
No 410
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=93.87 E-value=0.072 Score=49.22 Aligned_cols=45 Identities=20% Similarity=0.246 Sum_probs=33.7
Q ss_pred EEEEEcCCCChHHHHHHHHHcccCcccccceeEEEEeCCCCChHHHHHHHHHHcCCCC
Q 003890 210 VVAILNGSGFDKTAFAADTYNNNHIKFYFDCLAWVRVSIAYDSGKILDDIIKSVMPPS 267 (788)
Q Consensus 210 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~~l~~~~ 267 (788)
+|.|-|.+|+||||+|+.+.++.-.. | .+.-.+.++|++..+...
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~gl~--~-----------vsaG~iFR~~A~e~gmsl 46 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLGLK--L-----------VSAGTIFREMARERGMSL 46 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhCCc--e-----------eeccHHHHHHHHHcCCCH
Confidence 68999999999999999999842221 1 245577888888876553
No 411
>PRK05922 type III secretion system ATPase; Validated
Probab=93.87 E-value=0.21 Score=54.81 Aligned_cols=90 Identities=4% Similarity=0.110 Sum_probs=49.2
Q ss_pred cEEEEEEcCCCChHHHHHHHHHcccCcccccceeEEEEeCCCC-ChHHHHHHHHHHcCCCCCCcccccCC--------HH
Q 003890 208 LSVVAILNGSGFDKTAFAADTYNNNHIKFYFDCLAWVRVSIAY-DSGKILDDIIKSVMPPSRVSVIIGED--------YK 278 (788)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~~~~~il~~l~~~~~~~~~~~~~--------~~ 278 (788)
-..++|+|..|+|||||.+.+..... -+...++-+++.. .+.+...+...........-.-...+ .-
T Consensus 157 GqrigI~G~nG~GKSTLL~~Ia~~~~----~d~gvi~liGerg~ev~eyl~q~~~~~~~~rTVlv~atsd~~~~~r~~a~ 232 (434)
T PRK05922 157 GQRIGVFSEPGSGKSSLLSTIAKGSK----STINVIALIGERGREVREYIEQHKEGLAAQRTIIIASPAHETAPTKVIAG 232 (434)
T ss_pred CcEEEEECCCCCChHHHHHHHhccCC----CCceEEEEeCCCCchHHHHHHHHHhhccccceEEEEECCCCCHHHHHHHH
Confidence 45689999999999999999987321 2333444444432 23344444433322221100000011 11
Q ss_pred HHHHHHHHHh--cCCcEEEEEeCCC
Q 003890 279 LKKTILRDYL--TNKKYFIVLDDVF 301 (788)
Q Consensus 279 ~~~~~l~~~l--~~kr~LlVLDdvw 301 (788)
..+-.+.+++ +|+++|+++||+-
T Consensus 233 ~~a~tiAEyfrd~G~~VLl~~DslT 257 (434)
T PRK05922 233 RAAMTIAEYFRDQGHRVLFIMDSLS 257 (434)
T ss_pred HHHHHHHHHHHHcCCCEEEeccchh
Confidence 1122345555 5899999999995
No 412
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=93.84 E-value=0.061 Score=53.35 Aligned_cols=22 Identities=9% Similarity=-0.035 Sum_probs=20.5
Q ss_pred EEEEEEcCCCChHHHHHHHHHc
Q 003890 209 SVVAILNGSGFDKTAFAADTYN 230 (788)
Q Consensus 209 ~vi~I~G~gGiGKTtLa~~v~~ 230 (788)
.+++|+|..|.|||||.+.+..
T Consensus 30 ~~~~l~G~Ng~GKStll~~i~~ 51 (202)
T cd03243 30 RLLLITGPNMGGKSTYLRSIGL 51 (202)
T ss_pred eEEEEECCCCCccHHHHHHHHH
Confidence 7999999999999999999984
No 413
>PRK15453 phosphoribulokinase; Provisional
Probab=93.82 E-value=0.29 Score=50.31 Aligned_cols=81 Identities=14% Similarity=0.059 Sum_probs=44.2
Q ss_pred CcEEEEEEcCCCChHHHHHHHHHcccCcccccce-eEEEEeCC--CCChHHHHHHHHH--HcCCCCCCcccccCCHHHHH
Q 003890 207 GLSVVAILNGSGFDKTAFAADTYNNNHIKFYFDC-LAWVRVSI--AYDSGKILDDIIK--SVMPPSRVSVIIGEDYKLKK 281 (788)
Q Consensus 207 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~-~~wv~vs~--~~~~~~~~~~il~--~l~~~~~~~~~~~~~~~~~~ 281 (788)
...+|+|.|.+|+||||+|+.+.. ..+. ... .+.++... .++....-..+.. .-+.....-.++..+.+.+.
T Consensus 4 k~piI~ItG~SGsGKTTva~~l~~--if~~-~~~~~~vi~~D~yh~ydr~~~~~~~~~~~r~g~nfdhf~PdAnd~dlL~ 80 (290)
T PRK15453 4 KHPIIAVTGSSGAGTTTVKRAFEK--IFRR-ENINAAVVEGDSFHRYTRPEMKAAIAKARAAGRHFSHFGPEANLFDELE 80 (290)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH--HHhh-cCCCeEEEecccccccChhhHhhhhHHHHhcCCCCCCCCCCcccHHHHH
Confidence 367999999999999999999886 2221 111 33333222 2243333222211 11211111114666777788
Q ss_pred HHHHHHhcC
Q 003890 282 TILRDYLTN 290 (788)
Q Consensus 282 ~~l~~~l~~ 290 (788)
+.++...++
T Consensus 81 ~~l~~l~~~ 89 (290)
T PRK15453 81 QLFREYGET 89 (290)
T ss_pred HHHHHHhcC
Confidence 777776654
No 414
>PRK09099 type III secretion system ATPase; Provisional
Probab=93.82 E-value=0.21 Score=55.10 Aligned_cols=90 Identities=11% Similarity=0.142 Sum_probs=49.8
Q ss_pred cEEEEEEcCCCChHHHHHHHHHcccCcccccceeEEEEeCCC-CChHHHHHHHHHHcCCCCCCcc--cccCC-H-----H
Q 003890 208 LSVVAILNGSGFDKTAFAADTYNNNHIKFYFDCLAWVRVSIA-YDSGKILDDIIKSVMPPSRVSV--IIGED-Y-----K 278 (788)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~-~~~~~~~~~il~~l~~~~~~~~--~~~~~-~-----~ 278 (788)
-..++|.|..|+|||||++.+...... +..+.+-+++. -.+.++.+.+...-......-. ..+.+ . -
T Consensus 163 Gq~~~I~G~sG~GKTtLl~~ia~~~~~----d~~vi~~iGer~~ev~ef~~~~~~~~~l~rtvvv~~tsd~p~~~r~~a~ 238 (441)
T PRK09099 163 GQRMGIFAPAGVGKSTLMGMFARGTQC----DVNVIALIGERGREVREFIELILGEDGMARSVVVCATSDRSSIERAKAA 238 (441)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCC----CeEEEEEEccChHHHHHHHHHHhhcCCcceEEEEEECCCCCHHHHHHHH
Confidence 568899999999999999999874322 22333334443 3445555555433211110000 00000 1 1
Q ss_pred HHHHHHHHHh--cCCcEEEEEeCCC
Q 003890 279 LKKTILRDYL--TNKKYFIVLDDVF 301 (788)
Q Consensus 279 ~~~~~l~~~l--~~kr~LlVLDdvw 301 (788)
...-.+.+++ +|+++|+++||+-
T Consensus 239 ~~a~tiAEyfrd~G~~VLl~~DslT 263 (441)
T PRK09099 239 YVATAIAEYFRDRGLRVLLMMDSLT 263 (441)
T ss_pred HHHHHHHHHHHHcCCCEEEeccchh
Confidence 1222344555 5899999999995
No 415
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=93.81 E-value=0.33 Score=57.58 Aligned_cols=116 Identities=13% Similarity=0.115 Sum_probs=71.5
Q ss_pred CCcccchhcHHHHHHHHhcCC----C--CcEEEEEEcCCCChHHHHHHHHHcccCcccccceeEEEEeCCCCChHHHHHH
Q 003890 185 LDISEFERGREELFDLLIEGP----S--GLSVVAILNGSGFDKTAFAADTYNNNHIKFYFDCLAWVRVSIAYDSGKILDD 258 (788)
Q Consensus 185 ~~~vGr~~~~~~i~~~L~~~~----~--~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~ 258 (788)
..++|-++.+..|.+.+.... . ....+.+.|+.|+|||-||+++.. .+-+..+..+-++.|+ ...
T Consensus 562 ~~V~gQ~eAv~aIa~AI~~sr~gl~~~~~~awflflGpdgvGKt~lAkaLA~--~~Fgse~~~IriDmse------~~e- 632 (898)
T KOG1051|consen 562 ERVIGQDEAVAAIAAAIRRSRAGLKDPNPDAWFLFLGPDGVGKTELAKALAE--YVFGSEENFIRLDMSE------FQE- 632 (898)
T ss_pred hhccchHHHHHHHHHHHHhhhcccCCCCCCeEEEEECCCchhHHHHHHHHHH--HHcCCccceEEechhh------hhh-
Confidence 567888888888888886531 1 466788899999999999999988 4544444444444333 222
Q ss_pred HHHHcCCCCCCcccccCCHHHHHHHHHHHhcCCcE-EEEEeCCCC-ChhhHHHHhhhcC
Q 003890 259 IIKSVMPPSRVSVIIGEDYKLKKTILRDYLTNKKY-FIVLDDVFN-DSDIWDDLEQVLP 315 (788)
Q Consensus 259 il~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~-LlVLDdvw~-~~~~~~~l~~~l~ 315 (788)
+.+-++.+.. .-..+....|-+.++.++| .|.||||.- +......+...+.
T Consensus 633 vskligsp~g------yvG~e~gg~LteavrrrP~sVVLfdeIEkAh~~v~n~llq~lD 685 (898)
T KOG1051|consen 633 VSKLIGSPPG------YVGKEEGGQLTEAVKRRPYSVVLFEEIEKAHPDVLNILLQLLD 685 (898)
T ss_pred hhhccCCCcc------cccchhHHHHHHHHhcCCceEEEEechhhcCHHHHHHHHHHHh
Confidence 2222233221 1112233467777877776 666999962 3455555555544
No 416
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=93.80 E-value=0.57 Score=47.21 Aligned_cols=24 Identities=17% Similarity=0.194 Sum_probs=21.6
Q ss_pred cEEEEEEcCCCChHHHHHHHHHcc
Q 003890 208 LSVVAILNGSGFDKTAFAADTYNN 231 (788)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~~ 231 (788)
-.+++|+|..|.|||||++.+...
T Consensus 6 Ge~~~l~G~nGsGKSTLl~~l~G~ 29 (223)
T TIGR03771 6 GELLGLLGPNGAGKTTLLRAILGL 29 (223)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 358999999999999999999874
No 417
>PLN02318 phosphoribulokinase/uridine kinase
Probab=93.79 E-value=0.075 Score=59.87 Aligned_cols=34 Identities=29% Similarity=0.438 Sum_probs=27.5
Q ss_pred HHHHHhcCCCCcEEEEEEcCCCChHHHHHHHHHc
Q 003890 197 LFDLLIEGPSGLSVVAILNGSGFDKTAFAADTYN 230 (788)
Q Consensus 197 i~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 230 (788)
.++.+.....+..+|+|.|..|+||||||+.+..
T Consensus 54 a~qlL~~~~~~riIIGIaGpSGSGKTTLAk~Lag 87 (656)
T PLN02318 54 ACQLLAQKNDGIILVGVAGPSGAGKTVFTEKVLN 87 (656)
T ss_pred HHHHHHhcCCCeEEEEEECCCCCcHHHHHHHHHh
Confidence 3444444545689999999999999999999987
No 418
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=93.79 E-value=0.24 Score=58.16 Aligned_cols=88 Identities=19% Similarity=0.105 Sum_probs=48.7
Q ss_pred cEEEEEEcCCCChHHHHHHHHHcccCcccccceeEEEEeCC-CCChHHHHHHHHHHcCCCCCCcccccCCHHHHHHHHHH
Q 003890 208 LSVVAILNGSGFDKTAFAADTYNNNHIKFYFDCLAWVRVSI-AYDSGKILDDIIKSVMPPSRVSVIIGEDYKLKKTILRD 286 (788)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~-~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~ 286 (788)
-+||+++|..|+||||++..+.........-..+..++... .....+-++...+.++.... ...+.+++...+.+
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~----~~~~~~~l~~al~~ 260 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPVH----AVKDAADLRFALAA 260 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCcc----ccCCHHHHHHHHHH
Confidence 47999999999999999888876321111112355554321 22244445555555554432 23345555555543
Q ss_pred HhcCCcEEEEEeCCC
Q 003890 287 YLTNKKYFIVLDDVF 301 (788)
Q Consensus 287 ~l~~kr~LlVLDdvw 301 (788)
++++. +|++|=.-
T Consensus 261 -~~~~D-~VLIDTAG 273 (767)
T PRK14723 261 -LGDKH-LVLIDTVG 273 (767)
T ss_pred -hcCCC-EEEEeCCC
Confidence 34443 66667664
No 419
>PTZ00088 adenylate kinase 1; Provisional
Probab=93.77 E-value=0.1 Score=52.56 Aligned_cols=21 Identities=19% Similarity=0.324 Sum_probs=19.4
Q ss_pred EEEEEcCCCChHHHHHHHHHc
Q 003890 210 VVAILNGSGFDKTAFAADTYN 230 (788)
Q Consensus 210 vi~I~G~gGiGKTtLa~~v~~ 230 (788)
.|.|+|++|+||||+|+.+.+
T Consensus 8 rIvl~G~PGsGK~T~a~~La~ 28 (229)
T PTZ00088 8 KIVLFGAPGVGKGTFAEILSK 28 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 388999999999999999987
No 420
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=93.76 E-value=0.41 Score=45.61 Aligned_cols=120 Identities=12% Similarity=0.083 Sum_probs=62.6
Q ss_pred cEEEEEEcCCCChHHHHHHHHHcccCcccccce--eEEEEeCCCCChHHHHHHHHHHcCCC--CCCccccc-------CC
Q 003890 208 LSVVAILNGSGFDKTAFAADTYNNNHIKFYFDC--LAWVRVSIAYDSGKILDDIIKSVMPP--SRVSVIIG-------ED 276 (788)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~--~~wv~vs~~~~~~~~~~~il~~l~~~--~~~~~~~~-------~~ 276 (788)
...|-|++..|.||||.|..+.-. .....+.. +-|+.-...+.....+... .+... .....+.. ..
T Consensus 5 ~Gli~v~~g~GkGKtt~a~g~a~r-a~~~g~~v~ivQFlKg~~~~GE~~~l~~~--~~~~~~~g~g~~~~~~~~~~~~~~ 81 (173)
T TIGR00708 5 RGIIIVHTGNGKGKTTAAFGMALR-ALGHGKKVGVIQFIKGAWPNGERAAFEPH--GVEFQVMGTGFTWETQNREADTAI 81 (173)
T ss_pred ccEEEEECCCCCChHHHHHHHHHH-HHHCCCeEEEEEEecCCcccChHHHHHhc--CcEEEECCCCCeecCCCcHHHHHH
Confidence 467888888999999998776652 12223332 1233323233433444332 11000 00000000 11
Q ss_pred HHHHHHHHHHHhcCCcE-EEEEeCCCC----ChhhHHHHhhhcCCCCCCcEEEEecCCh
Q 003890 277 YKLKKTILRDYLTNKKY-FIVLDDVFN----DSDIWDDLEQVLPDNQNGSRVLITVTDL 330 (788)
Q Consensus 277 ~~~~~~~l~~~l~~kr~-LlVLDdvw~----~~~~~~~l~~~l~~~~~gskIivTTR~~ 330 (788)
..+..+..++.+...+| |+|||.+-. .--+.+.+...+....++.-||+|-|+.
T Consensus 82 ~~~~~~~a~~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~ 140 (173)
T TIGR00708 82 AKAAWQHAKEMLADPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGC 140 (173)
T ss_pred HHHHHHHHHHHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCC
Confidence 22233445555544444 999999841 2234456666666566677899999974
No 421
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=93.76 E-value=0.19 Score=48.03 Aligned_cols=44 Identities=18% Similarity=0.058 Sum_probs=32.6
Q ss_pred cccchhcHHHHHHHHhcCCCCcEEEEEEcCCCChHHHHHHHHHc
Q 003890 187 ISEFERGREELFDLLIEGPSGLSVVAILNGSGFDKTAFAADTYN 230 (788)
Q Consensus 187 ~vGr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 230 (788)
+||....+.++++.+..-.....-|-|+|..|+||+.+|+.+++
T Consensus 1 liG~s~~m~~~~~~~~~~a~~~~pVlI~GE~GtGK~~lA~~IH~ 44 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAASSDLPVLITGETGTGKELLARAIHN 44 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTTSTS-EEEECSTTSSHHHHHHHHHH
T ss_pred CEeCCHHHHHHHHHHHHHhCCCCCEEEEcCCCCcHHHHHHHHHH
Confidence 47888888888888765322234555999999999999999998
No 422
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.76 E-value=0.49 Score=46.86 Aligned_cols=24 Identities=17% Similarity=0.147 Sum_probs=21.8
Q ss_pred cEEEEEEcCCCChHHHHHHHHHcc
Q 003890 208 LSVVAILNGSGFDKTAFAADTYNN 231 (788)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~~ 231 (788)
-.+++|+|..|+|||||++.+..-
T Consensus 33 Ge~~~i~G~nGsGKSTLl~~l~G~ 56 (202)
T cd03233 33 GEMVLVLGRPGSGCSTLLKALANR 56 (202)
T ss_pred CcEEEEECCCCCCHHHHHHHhccc
Confidence 469999999999999999998874
No 423
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=93.74 E-value=0.18 Score=55.36 Aligned_cols=90 Identities=10% Similarity=0.143 Sum_probs=48.6
Q ss_pred cEEEEEEcCCCChHHHHHHHHHcccCcccccceeEEEEeCCC-CChHHHHHHHHHHcCCCCCC------c--ccccCCHH
Q 003890 208 LSVVAILNGSGFDKTAFAADTYNNNHIKFYFDCLAWVRVSIA-YDSGKILDDIIKSVMPPSRV------S--VIIGEDYK 278 (788)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~-~~~~~~~~~il~~l~~~~~~------~--~~~~~~~~ 278 (788)
-..++|+|..|+|||||++.+..... .+..+...+... -++.++..+.+..-...... + ........
T Consensus 155 GQ~igI~G~sGaGKSTLl~~I~g~~~----~dv~vig~IGerg~ev~ef~~~~l~~~gl~rsvvv~~~~d~s~~~rl~a~ 230 (434)
T PRK07196 155 GQRVGLMAGSGVGKSVLLGMITRYTQ----ADVVVVGLIGERGREVKEFIEHSLQAAGMAKSVVVAAPADESPLMRIKAT 230 (434)
T ss_pred ceEEEEECCCCCCccHHHHHHhcccC----CCeEEEEEEeeecHHHHHHHHHHhhhcccceEEEEEecCCCChhhhHHHH
Confidence 56899999999999999999887321 122222333332 23333333433332211100 0 00111122
Q ss_pred HHHHHHHHHh--cCCcEEEEEeCCC
Q 003890 279 LKKTILRDYL--TNKKYFIVLDDVF 301 (788)
Q Consensus 279 ~~~~~l~~~l--~~kr~LlVLDdvw 301 (788)
+....+.+++ +++++|+++||+-
T Consensus 231 e~a~~iAEyfr~~g~~Vll~~Dslt 255 (434)
T PRK07196 231 ELCHAIATYYRDKGHDVLLLVDSLT 255 (434)
T ss_pred HHHHHHHHHhhhccCCEEEeecchh
Confidence 3333445554 5799999999995
No 424
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=93.73 E-value=0.068 Score=50.00 Aligned_cols=36 Identities=17% Similarity=-0.090 Sum_probs=26.9
Q ss_pred cEEEEEEcCCCChHHHHHHHHHcccCcccccceeEEEE
Q 003890 208 LSVVAILNGSGFDKTAFAADTYNNNHIKFYFDCLAWVR 245 (788)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~ 245 (788)
..||=|.|.+|+||||||+.+.. +....-..+.+++
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~--~L~~~g~~~~~LD 37 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALER--RLFARGIKVYLLD 37 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHH--HHHHTTS-EEEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHH--HHHHcCCcEEEec
Confidence 35888999999999999999998 5554444455553
No 425
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=93.73 E-value=0.75 Score=53.07 Aligned_cols=24 Identities=13% Similarity=0.167 Sum_probs=21.7
Q ss_pred cEEEEEEcCCCChHHHHHHHHHcc
Q 003890 208 LSVVAILNGSGFDKTAFAADTYNN 231 (788)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~~ 231 (788)
-.+++|+|..|+|||||.+.++..
T Consensus 27 Ge~~~liG~NGsGKSTLl~~l~Gl 50 (530)
T PRK15064 27 GNRYGLIGANGCGKSTFMKILGGD 50 (530)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 458999999999999999999974
No 426
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=93.71 E-value=0.061 Score=51.34 Aligned_cols=24 Identities=25% Similarity=0.213 Sum_probs=22.1
Q ss_pred CcEEEEEEcCCCChHHHHHHHHHc
Q 003890 207 GLSVVAILNGSGFDKTAFAADTYN 230 (788)
Q Consensus 207 ~~~vi~I~G~gGiGKTtLa~~v~~ 230 (788)
...+++|+|..|+|||||++.+..
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~ 28 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIP 28 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHH
Confidence 467999999999999999999987
No 427
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=93.70 E-value=0.16 Score=57.70 Aligned_cols=73 Identities=14% Similarity=0.179 Sum_probs=52.7
Q ss_pred CcEEEEEEcCCCChHHHHHHHHHcccCcccccceeEEEEeCCCCChHHHHHHHHHHcCCCCCCcccccCCHHHHHHHHHH
Q 003890 207 GLSVVAILNGSGFDKTAFAADTYNNNHIKFYFDCLAWVRVSIAYDSGKILDDIIKSVMPPSRVSVIIGEDYKLKKTILRD 286 (788)
Q Consensus 207 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~ 286 (788)
.-++.-++|++|+||||||..++... -| .++=|+.|..-.+..+-..|...+..... .+.
T Consensus 325 ~kKilLL~GppGlGKTTLAHViAkqa----GY-sVvEINASDeRt~~~v~~kI~~avq~~s~----l~a----------- 384 (877)
T KOG1969|consen 325 PKKILLLCGPPGLGKTTLAHVIAKQA----GY-SVVEINASDERTAPMVKEKIENAVQNHSV----LDA----------- 384 (877)
T ss_pred ccceEEeecCCCCChhHHHHHHHHhc----Cc-eEEEecccccccHHHHHHHHHHHHhhccc----ccc-----------
Confidence 45789999999999999999999832 12 26677888887777777777766654432 000
Q ss_pred HhcCCcEEEEEeCCC
Q 003890 287 YLTNKKYFIVLDDVF 301 (788)
Q Consensus 287 ~l~~kr~LlVLDdvw 301 (788)
.+++.-||+|.+.
T Consensus 385 --dsrP~CLViDEID 397 (877)
T KOG1969|consen 385 --DSRPVCLVIDEID 397 (877)
T ss_pred --CCCcceEEEeccc
Confidence 1477778999996
No 428
>PRK00131 aroK shikimate kinase; Reviewed
Probab=93.68 E-value=0.052 Score=52.25 Aligned_cols=23 Identities=9% Similarity=0.007 Sum_probs=21.3
Q ss_pred cEEEEEEcCCCChHHHHHHHHHc
Q 003890 208 LSVVAILNGSGFDKTAFAADTYN 230 (788)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~ 230 (788)
...|.++|++|+||||+|+.+..
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~ 26 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAK 26 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHH
Confidence 45899999999999999999998
No 429
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=93.65 E-value=0.091 Score=54.86 Aligned_cols=53 Identities=19% Similarity=0.158 Sum_probs=41.5
Q ss_pred CCCcccchhcHHHHHHHHhcC----C-------CCcEEEEEEcCCCChHHHHHHHHHcccCccccc
Q 003890 184 RLDISEFERGREELFDLLIEG----P-------SGLSVVAILNGSGFDKTAFAADTYNNNHIKFYF 238 (788)
Q Consensus 184 ~~~~vGr~~~~~~i~~~L~~~----~-------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F 238 (788)
|.++=|.++.+++|.+.+.-+ + ...+=|-+||++|.|||-||++|++ +....|
T Consensus 150 Y~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~--~T~AtF 213 (406)
T COG1222 150 YEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVAN--QTDATF 213 (406)
T ss_pred hhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHh--ccCceE
Confidence 377888999999998887432 1 3467778999999999999999999 444443
No 430
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=93.65 E-value=0.58 Score=49.28 Aligned_cols=24 Identities=25% Similarity=0.206 Sum_probs=21.6
Q ss_pred cEEEEEEcCCCChHHHHHHHHHcc
Q 003890 208 LSVVAILNGSGFDKTAFAADTYNN 231 (788)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~~ 231 (788)
-.+++|+|..|.|||||++.+..-
T Consensus 33 Ge~~~i~G~nGsGKSTLl~~l~Gl 56 (290)
T PRK13634 33 GSYVAIIGHTGSGKSTLLQHLNGL 56 (290)
T ss_pred CCEEEEECCCCCcHHHHHHHHhcC
Confidence 459999999999999999999863
No 431
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=93.64 E-value=0.74 Score=48.44 Aligned_cols=24 Identities=17% Similarity=0.142 Sum_probs=21.6
Q ss_pred cEEEEEEcCCCChHHHHHHHHHcc
Q 003890 208 LSVVAILNGSGFDKTAFAADTYNN 231 (788)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~~ 231 (788)
-.+++|+|..|.|||||++.++..
T Consensus 32 Ge~v~i~G~nGsGKSTLl~~l~Gl 55 (288)
T PRK13643 32 GSYTALIGHTGSGKSTLLQHLNGL 55 (288)
T ss_pred CCEEEEECCCCChHHHHHHHHhcC
Confidence 458999999999999999999864
No 432
>PRK13947 shikimate kinase; Provisional
Probab=93.59 E-value=0.049 Score=52.37 Aligned_cols=21 Identities=14% Similarity=0.151 Sum_probs=19.7
Q ss_pred EEEEEcCCCChHHHHHHHHHc
Q 003890 210 VVAILNGSGFDKTAFAADTYN 230 (788)
Q Consensus 210 vi~I~G~gGiGKTtLa~~v~~ 230 (788)
-|.|+|++|+||||+|+.+.+
T Consensus 3 ~I~l~G~~GsGKst~a~~La~ 23 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVAT 23 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHH
Confidence 488999999999999999998
No 433
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=93.58 E-value=0.099 Score=47.51 Aligned_cols=35 Identities=14% Similarity=0.200 Sum_probs=25.8
Q ss_pred cEEEEEEcCCCChHHHHHHHHHcccCcccccceeEEEEeCCC
Q 003890 208 LSVVAILNGSGFDKTAFAADTYNNNHIKFYFDCLAWVRVSIA 249 (788)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~ 249 (788)
..-|-|.|-+|+||||||..+... . ..-|+++|.-
T Consensus 7 ~PNILvtGTPG~GKstl~~~lae~--~-----~~~~i~isd~ 41 (176)
T KOG3347|consen 7 RPNILVTGTPGTGKSTLAERLAEK--T-----GLEYIEISDL 41 (176)
T ss_pred CCCEEEeCCCCCCchhHHHHHHHH--h-----CCceEehhhH
Confidence 345779999999999999999972 1 1346666654
No 434
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=93.58 E-value=0.086 Score=52.28 Aligned_cols=23 Identities=22% Similarity=0.170 Sum_probs=21.0
Q ss_pred cEEEEEEcCCCChHHHHHHHHHc
Q 003890 208 LSVVAILNGSGFDKTAFAADTYN 230 (788)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~ 230 (788)
-.++||+|..|+|||||++.+.-
T Consensus 33 Ge~lgivGeSGsGKSTL~r~l~G 55 (252)
T COG1124 33 GETLGIVGESGSGKSTLARLLAG 55 (252)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhc
Confidence 45899999999999999999886
No 435
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=93.56 E-value=0.056 Score=52.45 Aligned_cols=22 Identities=18% Similarity=0.288 Sum_probs=20.8
Q ss_pred EEEEEEcCCCChHHHHHHHHHc
Q 003890 209 SVVAILNGSGFDKTAFAADTYN 230 (788)
Q Consensus 209 ~vi~I~G~gGiGKTtLa~~v~~ 230 (788)
++|+|+|+.|+||||||+.+..
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~ 23 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLE 23 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHc
Confidence 5799999999999999999998
No 436
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=93.56 E-value=0.081 Score=55.78 Aligned_cols=46 Identities=15% Similarity=0.142 Sum_probs=41.2
Q ss_pred CCcccchhcHHHHHHHHhcC----CCCcEEEEEEcCCCChHHHHHHHHHc
Q 003890 185 LDISEFERGREELFDLLIEG----PSGLSVVAILNGSGFDKTAFAADTYN 230 (788)
Q Consensus 185 ~~~vGr~~~~~~i~~~L~~~----~~~~~vi~I~G~gGiGKTtLa~~v~~ 230 (788)
..++|.++.++++++.+... +..-+|+-++|+.|.||||||..+.+
T Consensus 61 ~~~~G~~~~i~~lV~~fk~AA~g~~~~krIl~L~GPvg~GKSsl~~~Lk~ 110 (358)
T PF08298_consen 61 DEFYGMEETIERLVNYFKSAAQGLEERKRILLLLGPVGGGKSSLAELLKR 110 (358)
T ss_pred ccccCcHHHHHHHHHHHHHHHhccCccceEEEEECCCCCCHHHHHHHHHH
Confidence 58999999999999999753 34678999999999999999999987
No 437
>PRK14528 adenylate kinase; Provisional
Probab=93.55 E-value=0.18 Score=49.22 Aligned_cols=23 Identities=13% Similarity=0.079 Sum_probs=20.3
Q ss_pred EEEEEEcCCCChHHHHHHHHHcc
Q 003890 209 SVVAILNGSGFDKTAFAADTYNN 231 (788)
Q Consensus 209 ~vi~I~G~gGiGKTtLa~~v~~~ 231 (788)
+.|.|.|++|+||||+|+.+...
T Consensus 2 ~~i~i~G~pGsGKtt~a~~la~~ 24 (186)
T PRK14528 2 KNIIFMGPPGAGKGTQAKILCER 24 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 46889999999999999999863
No 438
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=93.55 E-value=0.94 Score=48.05 Aligned_cols=45 Identities=11% Similarity=0.160 Sum_probs=30.0
Q ss_pred CCcEEEEEeCCCC-ChhhHHHHhhhcCCCCCCcEEEEecCC-hHHHh
Q 003890 290 NKKYFIVLDDVFN-DSDIWDDLEQVLPDNQNGSRVLITVTD-LDLLE 334 (788)
Q Consensus 290 ~kr~LlVLDdvw~-~~~~~~~l~~~l~~~~~gskIivTTR~-~~v~~ 334 (788)
+++-++|+|++.. +...-+.+...+-.-..++.+|++|.+ ..+..
T Consensus 112 g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~~~lLp 158 (319)
T PRK08769 112 GIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPARLPA 158 (319)
T ss_pred CCcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECChhhCch
Confidence 4666899999963 445667777777666667777777664 44443
No 439
>PRK14738 gmk guanylate kinase; Provisional
Probab=93.53 E-value=0.064 Score=53.32 Aligned_cols=30 Identities=30% Similarity=0.314 Sum_probs=24.8
Q ss_pred HhcCCCCcEEEEEEcCCCChHHHHHHHHHc
Q 003890 201 LIEGPSGLSVVAILNGSGFDKTAFAADTYN 230 (788)
Q Consensus 201 L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 230 (788)
+..+....+.|.|+|++|+|||||++.+.+
T Consensus 6 ~~~~~~~~~~ivi~GpsG~GK~tl~~~L~~ 35 (206)
T PRK14738 6 LFNKPAKPLLVVISGPSGVGKDAVLARMRE 35 (206)
T ss_pred ccCCCCCCeEEEEECcCCCCHHHHHHHHHh
Confidence 334445678999999999999999999976
No 440
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=93.52 E-value=0.2 Score=54.40 Aligned_cols=77 Identities=13% Similarity=0.119 Sum_probs=49.3
Q ss_pred CCcccchhcHHHHHHHHhcC------------CCCcEEEEEEcCCCChHHHHHHHHHcccCcccccce---eEEEEeC-C
Q 003890 185 LDISEFERGREELFDLLIEG------------PSGLSVVAILNGSGFDKTAFAADTYNNNHIKFYFDC---LAWVRVS-I 248 (788)
Q Consensus 185 ~~~vGr~~~~~~i~~~L~~~------------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~---~~wv~vs-~ 248 (788)
..++|.++.++.+.-.+... +...+-|-++|++|+|||++|+.+.. .....|-. .-++..+ .
T Consensus 12 ~~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~--~l~~~fi~vdat~~~e~g~v 89 (441)
T TIGR00390 12 KYIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAK--LANAPFIKVEATKFTEVGYV 89 (441)
T ss_pred hhccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHH--HhCCeEEEeecceeecCCcc
Confidence 45889988888887666532 11246788999999999999999998 34333322 1122211 1
Q ss_pred CCChHHHHHHHHHHc
Q 003890 249 AYDSGKILDDIIKSV 263 (788)
Q Consensus 249 ~~~~~~~~~~il~~l 263 (788)
..+.+.+.+.+....
T Consensus 90 G~dvE~i~r~l~e~A 104 (441)
T TIGR00390 90 GRDVESMVRDLTDAA 104 (441)
T ss_pred cCCHHHHHHHHHHHH
Confidence 235666666665554
No 441
>PRK06217 hypothetical protein; Validated
Probab=93.51 E-value=0.052 Score=52.90 Aligned_cols=23 Identities=22% Similarity=0.206 Sum_probs=20.7
Q ss_pred EEEEEEcCCCChHHHHHHHHHcc
Q 003890 209 SVVAILNGSGFDKTAFAADTYNN 231 (788)
Q Consensus 209 ~vi~I~G~gGiGKTtLa~~v~~~ 231 (788)
..|.|.|.+|+||||+|+.+...
T Consensus 2 ~~I~i~G~~GsGKSTla~~L~~~ 24 (183)
T PRK06217 2 MRIHITGASGSGTTTLGAALAER 24 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 35899999999999999999984
No 442
>cd01134 V_A-ATPase_A V/A-type ATP synthase catalytic subunit A. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria.
Probab=93.51 E-value=0.28 Score=51.88 Aligned_cols=59 Identities=17% Similarity=0.151 Sum_probs=40.2
Q ss_pred HHHHHHhcCCCCcEEEEEEcCCCChHHHHHHHHHcccCcccccceeEEEEeCCCCC-hHHHHHHH
Q 003890 196 ELFDLLIEGPSGLSVVAILNGSGFDKTAFAADTYNNNHIKFYFDCLAWVRVSIAYD-SGKILDDI 259 (788)
Q Consensus 196 ~i~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~-~~~~~~~i 259 (788)
++++.|..-. .-..++|.|..|+|||+|++++.+.. +-+.++++-+++..+ +.+++.++
T Consensus 146 rvID~l~Pi~-kGqr~~I~G~~G~GKT~L~~~Iak~~----~~dvvVyv~iGERg~Ev~e~l~ef 205 (369)
T cd01134 146 RVLDTLFPVV-KGGTAAIPGPFGCGKTVIQQSLSKYS----NSDIVIYVGCGERGNEMTEVLEEF 205 (369)
T ss_pred hhhhcccccc-CCCEEEEECCCCCChHHHHHHHHhCC----CCCEEEEEEeCCChHHHHHHHHHH
Confidence 3444443321 23488999999999999999999842 224688888888754 45555554
No 443
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=93.50 E-value=0.081 Score=51.52 Aligned_cols=36 Identities=14% Similarity=0.110 Sum_probs=28.6
Q ss_pred cEEEEEEcCCCChHHHHHHHHHcccCcccccceeEEEE
Q 003890 208 LSVVAILNGSGFDKTAFAADTYNNNHIKFYFDCLAWVR 245 (788)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~ 245 (788)
.++|.|+|+.|+|||||++.+.. +....|...++.+
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~--~~~~~~~~~v~~T 37 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQ--EFPDKFGRVVSHT 37 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHH--HSTTTEEEEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHH--hcccccccceeec
Confidence 47899999999999999999998 5666675444443
No 444
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=93.44 E-value=0.063 Score=49.49 Aligned_cols=21 Identities=14% Similarity=0.295 Sum_probs=19.5
Q ss_pred EEEEEcCCCChHHHHHHHHHc
Q 003890 210 VVAILNGSGFDKTAFAADTYN 230 (788)
Q Consensus 210 vi~I~G~gGiGKTtLa~~v~~ 230 (788)
.|+|+|+.|+|||||++.+..
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~ 21 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLE 21 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHh
Confidence 378999999999999999998
No 445
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=93.43 E-value=0.59 Score=49.88 Aligned_cols=21 Identities=10% Similarity=0.045 Sum_probs=18.6
Q ss_pred EEEEcCCCChHHHHHHHHHcc
Q 003890 211 VAILNGSGFDKTAFAADTYNN 231 (788)
Q Consensus 211 i~I~G~gGiGKTtLa~~v~~~ 231 (788)
+.+.|++|.||||+++.+.+.
T Consensus 2 ~~l~Gl~GaGKST~~~~l~~~ 22 (340)
T TIGR03575 2 CVLCGLPAAGKSTLARSLSAT 22 (340)
T ss_pred eEEECCCCCCHHHHHHHHHHH
Confidence 568999999999999999873
No 446
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=93.40 E-value=0.06 Score=53.83 Aligned_cols=58 Identities=10% Similarity=0.096 Sum_probs=36.0
Q ss_pred CcEEEEEEcCCCChHHHHHHHHHcccCcccccceeEEEEe---------CCCCChHHH--HHHHHHHcCCC
Q 003890 207 GLSVVAILNGSGFDKTAFAADTYNNNHIKFYFDCLAWVRV---------SIAYDSGKI--LDDIIKSVMPP 266 (788)
Q Consensus 207 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v---------s~~~~~~~~--~~~il~~l~~~ 266 (788)
+...|.++||+|.||||..|.++.+ ....+....-|+. .-+.|+++. .++..++....
T Consensus 18 ~p~~ilVvGMAGSGKTTF~QrL~~h--l~~~~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LG 86 (366)
T KOG1532|consen 18 RPVIILVVGMAGSGKTTFMQRLNSH--LHAKKTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLG 86 (366)
T ss_pred CCcEEEEEecCCCCchhHHHHHHHH--HhhccCCCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCC
Confidence 4667888999999999999999985 3333333222322 122344443 45667766544
No 447
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=93.40 E-value=0.047 Score=47.90 Aligned_cols=21 Identities=19% Similarity=0.349 Sum_probs=18.5
Q ss_pred EEEEcCCCChHHHHHHHHHcc
Q 003890 211 VAILNGSGFDKTAFAADTYNN 231 (788)
Q Consensus 211 i~I~G~gGiGKTtLa~~v~~~ 231 (788)
|-|+|.+|+|||+||+.+..+
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~ 21 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKD 21 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999998873
No 448
>TIGR03497 FliI_clade2 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=93.40 E-value=0.24 Score=54.40 Aligned_cols=90 Identities=17% Similarity=0.173 Sum_probs=49.0
Q ss_pred cEEEEEEcCCCChHHHHHHHHHcccCcccccceeEEEEeCCCC-ChHHHHHHHHHHcCCCCCC---cccccCC-----HH
Q 003890 208 LSVVAILNGSGFDKTAFAADTYNNNHIKFYFDCLAWVRVSIAY-DSGKILDDIIKSVMPPSRV---SVIIGED-----YK 278 (788)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~~~~~il~~l~~~~~~---~~~~~~~-----~~ 278 (788)
-..++|+|..|+|||||++.+.... .. +..+..-+++.. .+.++..+.+.+-+..... ...+... .-
T Consensus 137 Gqri~I~G~sG~GKTtLl~~i~~~~--~~--~~gvi~~~Ger~~ev~e~~~~~l~~~~~~~~v~v~~tsd~~~~~r~~~~ 212 (413)
T TIGR03497 137 GQRVGIFAGSGVGKSTLLGMIARNA--KA--DINVIALIGERGREVRDFIEKDLGEEGLKRSVVVVATSDQPALMRLKAA 212 (413)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC--CC--CeEEEEEEccchHHHHHHHHHHhcccccceEEEEEECCCCCHHHHHHHH
Confidence 5689999999999999999888732 21 222333345443 3444444443331111000 0001101 11
Q ss_pred HHHHHHHHHh--cCCcEEEEEeCCC
Q 003890 279 LKKTILRDYL--TNKKYFIVLDDVF 301 (788)
Q Consensus 279 ~~~~~l~~~l--~~kr~LlVLDdvw 301 (788)
.....+.+++ +|+++|+++||+-
T Consensus 213 ~~a~tiAEyfr~~G~~Vll~~Dslt 237 (413)
T TIGR03497 213 FTATAIAEYFRDQGKDVLLMMDSVT 237 (413)
T ss_pred HHHHHHHHHHHHCCCCEEEEEcCcH
Confidence 2223344555 5899999999995
No 449
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=93.39 E-value=0.24 Score=54.81 Aligned_cols=25 Identities=28% Similarity=0.312 Sum_probs=22.0
Q ss_pred CcEEEEEEcCCCChHHHHHHHHHcc
Q 003890 207 GLSVVAILNGSGFDKTAFAADTYNN 231 (788)
Q Consensus 207 ~~~vi~I~G~gGiGKTtLa~~v~~~ 231 (788)
.-.+++|+|..|+|||||++.+...
T Consensus 157 ~Gq~i~I~G~sG~GKStLl~~I~~~ 181 (438)
T PRK07721 157 KGQRVGIFAGSGVGKSTLMGMIARN 181 (438)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcc
Confidence 3578999999999999999998873
No 450
>PRK13949 shikimate kinase; Provisional
Probab=93.38 E-value=0.058 Score=51.71 Aligned_cols=23 Identities=13% Similarity=0.143 Sum_probs=20.6
Q ss_pred EEEEEEcCCCChHHHHHHHHHcc
Q 003890 209 SVVAILNGSGFDKTAFAADTYNN 231 (788)
Q Consensus 209 ~vi~I~G~gGiGKTtLa~~v~~~ 231 (788)
+-|.|+|++|+||||+++.+...
T Consensus 2 ~~I~liG~~GsGKstl~~~La~~ 24 (169)
T PRK13949 2 ARIFLVGYMGAGKTTLGKALARE 24 (169)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 35889999999999999999983
No 451
>TIGR01039 atpD ATP synthase, F1 beta subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. Proton translocating ATP synthase, F1 beta subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), A subunit.
Probab=93.37 E-value=0.18 Score=55.62 Aligned_cols=93 Identities=15% Similarity=0.222 Sum_probs=54.6
Q ss_pred cEEEEEEcCCCChHHHHHHHHHcccCcccccceeEEEEeCCCCC-hHHHHHHHHHHcCCCCCCc--ccccCC-H-----H
Q 003890 208 LSVVAILNGSGFDKTAFAADTYNNNHIKFYFDCLAWVRVSIAYD-SGKILDDIIKSVMPPSRVS--VIIGED-Y-----K 278 (788)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~-~~~~~~~il~~l~~~~~~~--~~~~~~-~-----~ 278 (788)
-..++|.|.+|+|||||+.++..... ..+=..++++-+++... +.++.+++...=......- ...+.+ . -
T Consensus 143 GQr~~If~~~G~GKt~L~~~~~~~~~-~~~~~v~V~alIGER~rEv~ef~~~~~~~~~l~rtvvV~atsd~p~~~R~~a~ 221 (461)
T TIGR01039 143 GGKIGLFGGAGVGKTVLIQELINNIA-KEHGGYSVFAGVGERTREGNDLYHEMKESGVIDKTALVYGQMNEPPGARMRVA 221 (461)
T ss_pred CCEEEeecCCCCChHHHHHHHHHHHH-hcCCCeEEEEEecCCchHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHHH
Confidence 45789999999999999998776321 11112577777877643 5666666654311111000 001111 1 1
Q ss_pred HHHHHHHHHh---cCCcEEEEEeCCC
Q 003890 279 LKKTILRDYL---TNKKYFIVLDDVF 301 (788)
Q Consensus 279 ~~~~~l~~~l---~~kr~LlVLDdvw 301 (788)
..+-.+.+++ +|+++|+|+||+-
T Consensus 222 ~~a~tiAEyfrd~~G~~VLll~DslT 247 (461)
T TIGR01039 222 LTGLTMAEYFRDEQGQDVLLFIDNIF 247 (461)
T ss_pred HHHHHHHHHHHHhcCCeeEEEecchh
Confidence 1233455666 5789999999995
No 452
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=93.36 E-value=0.053 Score=50.47 Aligned_cols=21 Identities=24% Similarity=0.210 Sum_probs=19.8
Q ss_pred EEEEEcCCCChHHHHHHHHHc
Q 003890 210 VVAILNGSGFDKTAFAADTYN 230 (788)
Q Consensus 210 vi~I~G~gGiGKTtLa~~v~~ 230 (788)
+|.|.|.+|+||||+|+.+..
T Consensus 1 ~I~i~G~~GsGKst~a~~la~ 21 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAK 21 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999997
No 453
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=93.36 E-value=0.052 Score=52.97 Aligned_cols=121 Identities=12% Similarity=0.081 Sum_probs=56.8
Q ss_pred EEEEEcCCCChHHHHHHHHHcccCcccccceeEEEEeCCCCChHHHHHHHHHHcCCCCCCcccccCCHHHHHHHHHHHhc
Q 003890 210 VVAILNGSGFDKTAFAADTYNNNHIKFYFDCLAWVRVSIAYDSGKILDDIIKSVMPPSRVSVIIGEDYKLKKTILRDYLT 289 (788)
Q Consensus 210 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~~l~ 289 (788)
++.|.|..|.||||+.+.+.-.. +-.+-.+.+|..-..- .....++..++...... ........-...+...+.
T Consensus 1 ~~~ltG~N~~GKst~l~~i~~~~-~la~~G~~v~a~~~~~----~~~d~il~~~~~~d~~~-~~~s~fs~~~~~l~~~l~ 74 (185)
T smart00534 1 VVIITGPNMGGKSTYLRQVGLIV-IMAQIGSFVPAESAEL----PVFDRIFTRIGASDSLA-QGLSTFMVEMKETANILK 74 (185)
T ss_pred CEEEECCCCCcHHHHHHHHHHHH-HHHHhCCCeeehheEe----cccceEEEEeCCCCchh-ccccHHHHHHHHHHHHHH
Confidence 46799999999999999988421 1111111111100000 00001111111111000 011111222233444554
Q ss_pred C--CcEEEEEeCCCC--ChhhH----HHHhhhcCCCCCCcEEEEecCChHHHhhcc
Q 003890 290 N--KKYFIVLDDVFN--DSDIW----DDLEQVLPDNQNGSRVLITVTDLDLLESLE 337 (788)
Q Consensus 290 ~--kr~LlVLDdvw~--~~~~~----~~l~~~l~~~~~gskIivTTR~~~v~~~~~ 337 (788)
. ++-|+++|..-. +..+- ..+...+.. ..|+.+|++|.+.++...+.
T Consensus 75 ~~~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~-~~~~~iii~TH~~~l~~~~~ 129 (185)
T smart00534 75 NATENSLVLLDELGRGTSTYDGVAIAAAVLEYLLE-KIGALTLFATHYHELTKLAD 129 (185)
T ss_pred hCCCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHh-cCCCeEEEEecHHHHHHHhh
Confidence 4 889999999852 22211 122222222 13678999999988776553
No 454
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=93.36 E-value=0.38 Score=47.15 Aligned_cols=21 Identities=19% Similarity=0.194 Sum_probs=19.3
Q ss_pred EEEEcCCCChHHHHHHHHHcc
Q 003890 211 VAILNGSGFDKTAFAADTYNN 231 (788)
Q Consensus 211 i~I~G~gGiGKTtLa~~v~~~ 231 (788)
|.|.|++|+||||+|+.+...
T Consensus 2 I~i~G~pGsGKst~a~~La~~ 22 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKK 22 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999999883
No 455
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=93.35 E-value=0.074 Score=56.87 Aligned_cols=48 Identities=19% Similarity=0.117 Sum_probs=39.3
Q ss_pred CCCCCCcccchhcHHHHHHHHhcCCCCcEEEEEEcCCCChHHHHHHHHHc
Q 003890 181 GQPRLDISEFERGREELFDLLIEGPSGLSVVAILNGSGFDKTAFAADTYN 230 (788)
Q Consensus 181 ~~~~~~~vGr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 230 (788)
..||..+||-++.+..+...+.+.. ..-|-|.|..|+||||+|+.+++
T Consensus 13 ~~pf~~ivGq~~~k~al~~~~~~p~--~~~vli~G~~GtGKs~~ar~~~~ 60 (350)
T CHL00081 13 VFPFTAIVGQEEMKLALILNVIDPK--IGGVMIMGDRGTGKSTTIRALVD 60 (350)
T ss_pred CCCHHHHhChHHHHHHHHHhccCCC--CCeEEEEcCCCCCHHHHHHHHHH
Confidence 4455889999998888887776654 55566999999999999999976
No 456
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=93.32 E-value=0.17 Score=54.90 Aligned_cols=77 Identities=14% Similarity=0.114 Sum_probs=49.3
Q ss_pred CCcccchhcHHHHHHHHhcC------------CCCcEEEEEEcCCCChHHHHHHHHHcccCcccccce---eEEEEe-CC
Q 003890 185 LDISEFERGREELFDLLIEG------------PSGLSVVAILNGSGFDKTAFAADTYNNNHIKFYFDC---LAWVRV-SI 248 (788)
Q Consensus 185 ~~~vGr~~~~~~i~~~L~~~------------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~---~~wv~v-s~ 248 (788)
..++|.+..++.+...+... +...+-|.++|++|+||||||+.+... ....|-. .-|... -.
T Consensus 15 ~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~--l~~~fi~vD~t~f~e~Gyv 92 (443)
T PRK05201 15 KYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKL--ANAPFIKVEATKFTEVGYV 92 (443)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHH--hCChheeecchhhccCCcc
Confidence 45899999999988887531 112467899999999999999999883 3333322 112211 11
Q ss_pred CCChHHHHHHHHHHc
Q 003890 249 AYDSGKILDDIIKSV 263 (788)
Q Consensus 249 ~~~~~~~~~~il~~l 263 (788)
..+.+.+.+.+....
T Consensus 93 G~d~e~~ir~L~~~A 107 (443)
T PRK05201 93 GRDVESIIRDLVEIA 107 (443)
T ss_pred cCCHHHHHHHHHHHH
Confidence 235566666666554
No 457
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=93.30 E-value=0.32 Score=51.63 Aligned_cols=25 Identities=16% Similarity=0.157 Sum_probs=22.2
Q ss_pred CcEEEEEEcCCCChHHHHHHHHHcc
Q 003890 207 GLSVVAILNGSGFDKTAFAADTYNN 231 (788)
Q Consensus 207 ~~~vi~I~G~gGiGKTtLa~~v~~~ 231 (788)
...+|+++|.+|+||||++..+...
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~ 137 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHK 137 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH
Confidence 4689999999999999999888773
No 458
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=93.28 E-value=0.12 Score=59.83 Aligned_cols=76 Identities=9% Similarity=-0.063 Sum_probs=56.5
Q ss_pred CCcccchhcHHHHHHHHhcCCCCcEEEEEEcCCCChHHHHHHHHHcccCcccccceeEEEEeCCCCChHHHHHHHHHHcC
Q 003890 185 LDISEFERGREELFDLLIEGPSGLSVVAILNGSGFDKTAFAADTYNNNHIKFYFDCLAWVRVSIAYDSGKILDDIIKSVM 264 (788)
Q Consensus 185 ~~~vGr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~~l~ 264 (788)
.+++|.+..++.+...+... +.+.++|.+|+||||+|+.+.+.. ...+|+..+|..-+. -+...+++.+..+++
T Consensus 31 ~~vigq~~a~~~L~~~~~~~----~~~l~~G~~G~GKttla~~l~~~l-~~~~~~~~~~~~np~-~~~~~~~~~v~~~~G 104 (637)
T PRK13765 31 DQVIGQEHAVEVIKKAAKQR----RHVMMIGSPGTGKSMLAKAMAELL-PKEELQDILVYPNPE-DPNNPKIRTVPAGKG 104 (637)
T ss_pred HHcCChHHHHHHHHHHHHhC----CeEEEECCCCCcHHHHHHHHHHHc-ChHhHHHheEeeCCC-cchHHHHHHHHHhcC
Confidence 78999988888888777654 368889999999999999998731 233457788865533 366777888877665
Q ss_pred CC
Q 003890 265 PP 266 (788)
Q Consensus 265 ~~ 266 (788)
..
T Consensus 105 ~~ 106 (637)
T PRK13765 105 KQ 106 (637)
T ss_pred HH
Confidence 54
No 459
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=93.27 E-value=0.065 Score=49.53 Aligned_cols=38 Identities=16% Similarity=0.147 Sum_probs=26.3
Q ss_pred EEEEEEcCCCChHHHHHHHHHcccCcc-cccceeEEEEeCC
Q 003890 209 SVVAILNGSGFDKTAFAADTYNNNHIK-FYFDCLAWVRVSI 248 (788)
Q Consensus 209 ~vi~I~G~gGiGKTtLa~~v~~~~~~~-~~F~~~~wv~vs~ 248 (788)
++|.|+|..|+|||||++.+.+. .. ..+...+..+...
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~--l~~~g~~v~~ik~~~~ 39 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINE--LKRRGYRVAVIKHTDH 39 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHH--HHHTT--EEEEEE-ST
T ss_pred CEEEEECCCCCCHHHHHHHHHHH--HhHcCCceEEEEEccC
Confidence 48999999999999999999984 33 3444444555444
No 460
>COG2842 Uncharacterized ATPase, putative transposase [General function prediction only]
Probab=93.27 E-value=0.5 Score=48.47 Aligned_cols=121 Identities=13% Similarity=0.078 Sum_probs=78.8
Q ss_pred CCcccchhcHHHHHHHHhcCCCCcEEEEEEcCCCChHHHHHHHHHcccCcccccceeEEEEeCCCCChHHHHHHHHHHcC
Q 003890 185 LDISEFERGREELFDLLIEGPSGLSVVAILNGSGFDKTAFAADTYNNNHIKFYFDCLAWVRVSIAYDSGKILDDIIKSVM 264 (788)
Q Consensus 185 ~~~vGr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~~l~ 264 (788)
+.++|-..- .+++.++......-+...++|+.|+|||+-++..++. .+....+..+..+....++..+.....
T Consensus 72 ~~~l~tkt~-r~~~~~~~~A~k~g~l~~vyg~~g~gKt~a~~~y~~s------~p~~~l~~~~p~~~a~~~i~~i~~~~~ 144 (297)
T COG2842 72 PDFLETKTV-RRIFFRTRPASKTGSLVVVYGYAGLGKTQAAKNYAPS------NPNALLIEADPSYTALVLILIICAAAF 144 (297)
T ss_pred ccccccchh-HhHhhhhhhhhhcCceEEEeccccchhHHHHHhhccc------CccceeecCChhhHHHHHHHHHHHHHh
Confidence 345554332 2334444433333448889999999999999999983 233334466777787777777777766
Q ss_pred CCCCCcccccCCHHHHHHHHHHHhcCCcEEEEEeCCCC-ChhhHHHHhhhcCCCC
Q 003890 265 PPSRVSVIIGEDYKLKKTILRDYLTNKKYFIVLDDVFN-DSDIWDDLEQVLPDNQ 318 (788)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVLDdvw~-~~~~~~~l~~~l~~~~ 318 (788)
... ..........+...+++..-+++.|+..+ ....++.+.......+
T Consensus 145 ~~~------~~~~~d~~~~~~~~l~~~~~~iivDEA~~L~~~ale~lr~i~d~~G 193 (297)
T COG2842 145 GAT------DGTINDLTERLMIRLRDTVRLIIVDEADRLPYRALEELRRIHDKTG 193 (297)
T ss_pred ccc------chhHHHHHHHHHHHHccCcceeeeehhhccChHHHHHHHHHHHhhC
Confidence 553 23456667777777788888899998853 3466666666554433
No 461
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=93.27 E-value=0.1 Score=55.84 Aligned_cols=46 Identities=15% Similarity=0.139 Sum_probs=37.4
Q ss_pred CCCCcccchhcHHHHHHHHhcCCCCcEEEEEEcCCCChHHHHHHHHHc
Q 003890 183 PRLDISEFERGREELFDLLIEGPSGLSVVAILNGSGFDKTAFAADTYN 230 (788)
Q Consensus 183 ~~~~~vGr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 230 (788)
||..+||-+..+..++-.+.++. ..-+.|.|..|+|||||++.+..
T Consensus 2 pf~~ivgq~~~~~al~~~~~~~~--~g~vli~G~~G~gKttl~r~~~~ 47 (337)
T TIGR02030 2 PFTAIVGQDEMKLALLLNVIDPK--IGGVMVMGDRGTGKSTAVRALAA 47 (337)
T ss_pred CccccccHHHHHHHHHHHhcCCC--CCeEEEEcCCCCCHHHHHHHHHH
Confidence 44679999999988877776543 55577999999999999999975
No 462
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=93.26 E-value=0.88 Score=46.46 Aligned_cols=24 Identities=17% Similarity=0.131 Sum_probs=21.5
Q ss_pred cEEEEEEcCCCChHHHHHHHHHcc
Q 003890 208 LSVVAILNGSGFDKTAFAADTYNN 231 (788)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~~ 231 (788)
-.+++|+|..|.|||||.+.+...
T Consensus 28 Ge~~~l~G~nGsGKSTLl~~l~G~ 51 (242)
T TIGR03411 28 GELRVIIGPNGAGKTTMMDVITGK 51 (242)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 458999999999999999999863
No 463
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=93.26 E-value=0.063 Score=51.86 Aligned_cols=23 Identities=17% Similarity=0.239 Sum_probs=21.0
Q ss_pred EEEEEEcCCCChHHHHHHHHHcc
Q 003890 209 SVVAILNGSGFDKTAFAADTYNN 231 (788)
Q Consensus 209 ~vi~I~G~gGiGKTtLa~~v~~~ 231 (788)
++|.+.|++|+||||+|+.+...
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~ 25 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSV 25 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 58999999999999999999873
No 464
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=93.23 E-value=1.6 Score=49.70 Aligned_cols=130 Identities=15% Similarity=0.153 Sum_probs=69.1
Q ss_pred CcEEEEEEcCCCChHHHHHHHHHcccC-ccccc-----ceeEEEEeC---------------CCC-C-hHHHHHHHHHHc
Q 003890 207 GLSVVAILNGSGFDKTAFAADTYNNNH-IKFYF-----DCLAWVRVS---------------IAY-D-SGKILDDIIKSV 263 (788)
Q Consensus 207 ~~~vi~I~G~gGiGKTtLa~~v~~~~~-~~~~F-----~~~~wv~vs---------------~~~-~-~~~~~~~il~~l 263 (788)
.-..|+|+|..|+|||||.+.+..... ..+.. -.+.|+.-. +.+ + .+.-.+..+.++
T Consensus 347 ~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~v~igyf~Q~~~~l~~~~t~~d~l~~~~~~~~e~~~r~~L~~f 426 (530)
T COG0488 347 RGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGETVKIGYFDQHRDELDPDKTVLEELSEGFPDGDEQEVRAYLGRF 426 (530)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCceEEEEEEehhhhcCccCcHHHHHHhhCccccHHHHHHHHHHc
Confidence 345899999999999999999955211 11111 112222111 111 1 133344444444
Q ss_pred CCCCCCc--ccc-cCCHHHHHHHHHHHhcCCcEEEEEeCCCC--ChhhHHHHhhhcCCCCCCcEEEEecCChHHHhhccc
Q 003890 264 MPPSRVS--VII-GEDYKLKKTILRDYLTNKKYFIVLDDVFN--DSDIWDDLEQVLPDNQNGSRVLITVTDLDLLESLEM 338 (788)
Q Consensus 264 ~~~~~~~--~~~-~~~~~~~~~~l~~~l~~kr~LlVLDdvw~--~~~~~~~l~~~l~~~~~gskIivTTR~~~v~~~~~~ 338 (788)
+-..... ... -+.-+...-.+...+-.+.=+||||.=-| +.+..+.+..++.... |+ ||+.|-++........
T Consensus 427 ~F~~~~~~~~v~~LSGGEk~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f~-Gt-vl~VSHDr~Fl~~va~ 504 (530)
T COG0488 427 GFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLDFE-GT-VLLVSHDRYFLDRVAT 504 (530)
T ss_pred CCChHHHhCchhhcCHhHHHHHHHHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHhCC-Ce-EEEEeCCHHHHHhhcc
Confidence 4332210 001 11223333345566667888999997753 3444555555555433 54 7788888877766543
No 465
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=93.21 E-value=0.86 Score=51.82 Aligned_cols=60 Identities=22% Similarity=0.287 Sum_probs=38.5
Q ss_pred HHHHHHHHHHhcCCcEEEEEeCCCC--ChhhHHHHhhhcCCCCCCcEEEEecCChHHHhhcccc
Q 003890 278 KLKKTILRDYLTNKKYFIVLDDVFN--DSDIWDDLEQVLPDNQNGSRVLITVTDLDLLESLEME 339 (788)
Q Consensus 278 ~~~~~~l~~~l~~kr~LlVLDdvw~--~~~~~~~l~~~l~~~~~gskIivTTR~~~v~~~~~~~ 339 (788)
+...-.|.+.|-.+.=+|+||.=-| +.+....+...+.. .+| -+||+|-++.-.+.+.+.
T Consensus 158 ~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~-~~g-tviiVSHDR~FLd~V~t~ 219 (530)
T COG0488 158 WRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKR-YPG-TVIVVSHDRYFLDNVATH 219 (530)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHh-CCC-cEEEEeCCHHHHHHHhhh
Confidence 3444566777777888999997752 22333334444442 335 699999998877766554
No 466
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=93.18 E-value=0.96 Score=53.36 Aligned_cols=24 Identities=13% Similarity=0.133 Sum_probs=21.7
Q ss_pred cEEEEEEcCCCChHHHHHHHHHcc
Q 003890 208 LSVVAILNGSGFDKTAFAADTYNN 231 (788)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~~ 231 (788)
-.+++|+|..|+|||||.+.+...
T Consensus 29 Ge~v~LvG~NGsGKSTLLriiaG~ 52 (635)
T PRK11147 29 NERVCLVGRNGAGKSTLMKILNGE 52 (635)
T ss_pred CCEEEEECCCCCCHHHHHHHHcCC
Confidence 458999999999999999999874
No 467
>TIGR03496 FliI_clade1 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=93.17 E-value=0.25 Score=54.24 Aligned_cols=90 Identities=14% Similarity=0.177 Sum_probs=49.7
Q ss_pred cEEEEEEcCCCChHHHHHHHHHcccCcccccceeEEEEeCCCCC-hHHHHHHHHHHcCCCCCC---cccccCC-----HH
Q 003890 208 LSVVAILNGSGFDKTAFAADTYNNNHIKFYFDCLAWVRVSIAYD-SGKILDDIIKSVMPPSRV---SVIIGED-----YK 278 (788)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~-~~~~~~~il~~l~~~~~~---~~~~~~~-----~~ 278 (788)
-..++|+|..|+|||||++.+..... -+..+...+.+... +.++..+....=...... ...+... .-
T Consensus 137 Gq~~~I~G~sG~GKTtLl~~I~~~~~----~~~~vi~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~tsd~~~~~r~~a~ 212 (411)
T TIGR03496 137 GQRMGIFAGSGVGKSTLLGMMARYTE----ADVVVVGLIGERGREVKEFIEDILGEEGLARSVVVAATADESPLMRLRAA 212 (411)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCCC----CCEEEEEEEecChHHHHHHHHHHhhCCCcceEEEEEECCCCCHHHHHHHH
Confidence 45789999999999999999887322 12344455555533 444444443331111100 0001101 11
Q ss_pred HHHHHHHHHh--cCCcEEEEEeCCC
Q 003890 279 LKKTILRDYL--TNKKYFIVLDDVF 301 (788)
Q Consensus 279 ~~~~~l~~~l--~~kr~LlVLDdvw 301 (788)
...-.+.+++ +|+++|+++||+-
T Consensus 213 ~~a~tiAEyfr~~G~~Vll~~Dslt 237 (411)
T TIGR03496 213 FYATAIAEYFRDQGKDVLLLMDSLT 237 (411)
T ss_pred HHHHHHHHHHHHCCCCEEEEEeChH
Confidence 1122344444 6899999999995
No 468
>PRK08472 fliI flagellum-specific ATP synthase; Validated
Probab=93.17 E-value=0.29 Score=53.82 Aligned_cols=97 Identities=9% Similarity=0.058 Sum_probs=51.1
Q ss_pred cEEEEEEcCCCChHHHHHHHHHcccCcccccceeEEEEeCCCCCh-HHHHHHHHHHcCCCCCCcc-c-----ccCCH---
Q 003890 208 LSVVAILNGSGFDKTAFAADTYNNNHIKFYFDCLAWVRVSIAYDS-GKILDDIIKSVMPPSRVSV-I-----IGEDY--- 277 (788)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~-~~~~~~il~~l~~~~~~~~-~-----~~~~~--- 277 (788)
-..++|+|..|+|||||++.+..... -+..+..-+++.... .+..+.. ++....... . +....
T Consensus 157 Gq~~~i~G~sG~GKStLl~~i~~~~~----~~v~vi~~iGergrev~e~~~~~---l~~~l~~tvvV~atsddsp~~R~~ 229 (434)
T PRK08472 157 GQKLGIFAGSGVGKSTLMGMIVKGCL----APIKVVALIGERGREIPEFIEKN---LGGDLENTVIVVATSDDSPLMRKY 229 (434)
T ss_pred CCEEEEECCCCCCHHHHHHHHhhccC----CCEEEEEeeCccchhHHHHHHHH---hcCcccceEEEEECCCCCHHHhhH
Confidence 45889999999999999999987322 133444445555432 2332222 222100000 0 00000
Q ss_pred -HHHHHHHHHHh--cCCcEEEEEeCCCCChhhHHHHh
Q 003890 278 -KLKKTILRDYL--TNKKYFIVLDDVFNDSDIWDDLE 311 (788)
Q Consensus 278 -~~~~~~l~~~l--~~kr~LlVLDdvw~~~~~~~~l~ 311 (788)
-.....+.+++ +|+++|+++||+-.-...+.++.
T Consensus 230 ~~~~a~~iAEyFrd~G~~Vll~~DslTr~A~A~REi~ 266 (434)
T PRK08472 230 GAFCAMSVAEYFKNQGLDVLFIMDSVTRFAMAQREIG 266 (434)
T ss_pred HHHHHHHHHHHHHHcCCCEEEecccchHHHHHHHHHH
Confidence 01123344444 58999999999952223344443
No 469
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=93.15 E-value=0.44 Score=48.25 Aligned_cols=49 Identities=8% Similarity=0.146 Sum_probs=30.4
Q ss_pred CcEEEEEEcCCCChHHHHHHHHHcccCcccccceeEEEEeCCCCChHHHHHHH
Q 003890 207 GLSVVAILNGSGFDKTAFAADTYNNNHIKFYFDCLAWVRVSIAYDSGKILDDI 259 (788)
Q Consensus 207 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i 259 (788)
.-.++.|.|.+|+||||||.++... -.+.. ..+++++... +..++.+.+
T Consensus 23 ~g~~~~i~G~~G~GKTtl~~~~~~~-~~~~g-~~~~yi~~e~--~~~~~~~~~ 71 (230)
T PRK08533 23 AGSLILIEGDESTGKSILSQRLAYG-FLQNG-YSVSYVSTQL--TTTEFIKQM 71 (230)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH-HHhCC-CcEEEEeCCC--CHHHHHHHH
Confidence 3569999999999999998555442 11222 2356666332 445555555
No 470
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=93.12 E-value=0.071 Score=49.97 Aligned_cols=20 Identities=25% Similarity=0.267 Sum_probs=18.7
Q ss_pred EEEEEcCCCChHHHHHHHHH
Q 003890 210 VVAILNGSGFDKTAFAADTY 229 (788)
Q Consensus 210 vi~I~G~gGiGKTtLa~~v~ 229 (788)
.|+|.|.+|+||||+++.+.
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH
Confidence 58999999999999999987
No 471
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=93.11 E-value=0.12 Score=51.43 Aligned_cols=47 Identities=19% Similarity=0.169 Sum_probs=39.0
Q ss_pred CCcccchhcHHH---HHHHHhcC----CCCcEEEEEEcCCCChHHHHHHHHHcc
Q 003890 185 LDISEFERGREE---LFDLLIEG----PSGLSVVAILNGSGFDKTAFAADTYNN 231 (788)
Q Consensus 185 ~~~vGr~~~~~~---i~~~L~~~----~~~~~vi~I~G~gGiGKTtLa~~v~~~ 231 (788)
+++||-++.+.+ |++.|... +...+-|-.+|++|.|||-+|+++.+.
T Consensus 121 ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane 174 (368)
T COG1223 121 DDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANE 174 (368)
T ss_pred hhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhcc
Confidence 889998877654 67777654 356888999999999999999999994
No 472
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=93.07 E-value=0.33 Score=57.13 Aligned_cols=89 Identities=18% Similarity=0.099 Sum_probs=58.0
Q ss_pred CCcEEEEEEcCCCChHHHHHHHHHcccCcccccceeEEEEeCCCCChHHHHHHHHHHcCCCCCC-cccccCCHHHHHHHH
Q 003890 206 SGLSVVAILNGSGFDKTAFAADTYNNNHIKFYFDCLAWVRVSIAYDSGKILDDIIKSVMPPSRV-SVIIGEDYKLKKTIL 284 (788)
Q Consensus 206 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~~l~~~~~~-~~~~~~~~~~~~~~l 284 (788)
..-+++-|+|.+|+||||||.+++.. ....=..++|++..+.++. ..+++++..... ........++....+
T Consensus 58 p~GsiteI~G~~GsGKTtLal~~~~~--a~~~G~~v~yId~E~t~~~-----~~A~~lGvDl~~llv~~~~~~E~~l~~i 130 (790)
T PRK09519 58 PRGRVIEIYGPESSGKTTVALHAVAN--AQAAGGVAAFIDAEHALDP-----DYAKKLGVDTDSLLVSQPDTGEQALEIA 130 (790)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEECCccchhH-----HHHHHcCCChhHeEEecCCCHHHHHHHH
Confidence 45678889999999999999776552 2222245789987777764 256666554221 011334556666667
Q ss_pred HHHhcC-CcEEEEEeCCC
Q 003890 285 RDYLTN-KKYFIVLDDVF 301 (788)
Q Consensus 285 ~~~l~~-kr~LlVLDdvw 301 (788)
...++. +--|||+|-+-
T Consensus 131 ~~lv~~~~~~LVVIDSI~ 148 (790)
T PRK09519 131 DMLIRSGALDIVVIDSVA 148 (790)
T ss_pred HHHhhcCCCeEEEEcchh
Confidence 776644 56689999874
No 473
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=93.06 E-value=0.48 Score=54.35 Aligned_cols=93 Identities=15% Similarity=0.192 Sum_probs=63.2
Q ss_pred CCcccchhcHHHHHHHHhcC-------CC---CcEEEEEEcCCCChHHHHHHHHHcccCcccccceeEEEEeCCCCChHH
Q 003890 185 LDISEFERGREELFDLLIEG-------PS---GLSVVAILNGSGFDKTAFAADTYNNNHIKFYFDCLAWVRVSIAYDSGK 254 (788)
Q Consensus 185 ~~~vGr~~~~~~i~~~L~~~-------~~---~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~ 254 (788)
+++=|.++-+.+|.+-+.-. .+ ..+=|-++|++|.|||-||++|+.. .. ..|++|-..
T Consensus 672 dDVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATE--cs-----L~FlSVKGP----- 739 (953)
T KOG0736|consen 672 DDVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATE--CS-----LNFLSVKGP----- 739 (953)
T ss_pred hcccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhh--ce-----eeEEeecCH-----
Confidence 88889999999999877432 12 2445678999999999999999983 21 456666554
Q ss_pred HHHHHHHHcCCCCCCcccccCCHHHHHHHHHHHhcCCcEEEEEeCCC
Q 003890 255 ILDDIIKSVMPPSRVSVIIGEDYKLKKTILRDYLTNKKYFIVLDDVF 301 (788)
Q Consensus 255 ~~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVLDdvw 301 (788)
+++...-++ +++.+.+...+.=.-+++.|.||.+.
T Consensus 740 ---ELLNMYVGq---------SE~NVR~VFerAR~A~PCVIFFDELD 774 (953)
T KOG0736|consen 740 ---ELLNMYVGQ---------SEENVREVFERARSAAPCVIFFDELD 774 (953)
T ss_pred ---HHHHHHhcc---------hHHHHHHHHHHhhccCCeEEEecccc
Confidence 333333222 33444444444445689999999985
No 474
>PRK03846 adenylylsulfate kinase; Provisional
Probab=93.02 E-value=0.087 Score=52.05 Aligned_cols=24 Identities=21% Similarity=0.028 Sum_probs=22.3
Q ss_pred CcEEEEEEcCCCChHHHHHHHHHc
Q 003890 207 GLSVVAILNGSGFDKTAFAADTYN 230 (788)
Q Consensus 207 ~~~vi~I~G~gGiGKTtLa~~v~~ 230 (788)
+..+|.|+|++|+||||||+.+..
T Consensus 23 ~~~~i~i~G~~GsGKSTla~~l~~ 46 (198)
T PRK03846 23 KGVVLWFTGLSGSGKSTVAGALEE 46 (198)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 468999999999999999999987
No 475
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=93.02 E-value=0.39 Score=56.80 Aligned_cols=48 Identities=13% Similarity=0.045 Sum_probs=37.7
Q ss_pred CCCcccchhcHHHHHHHHhcCCCCcEEEEEEcCCCChHHHHHHHHHcc
Q 003890 184 RLDISEFERGREELFDLLIEGPSGLSVVAILNGSGFDKTAFAADTYNN 231 (788)
Q Consensus 184 ~~~~vGr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 231 (788)
+..++|....+.++.+.+..-...-.-|-|+|..|+||+++|+.+++.
T Consensus 324 ~~~l~g~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~~A~~ih~~ 371 (638)
T PRK11388 324 FDHMPQDSPQMRRLIHFGRQAAKSSFPVLLCGEEGVGKALLAQAIHNE 371 (638)
T ss_pred ccceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCcCHHHHHHHHHHh
Confidence 377999998888888877653222334679999999999999999973
No 476
>PRK00300 gmk guanylate kinase; Provisional
Probab=92.98 E-value=0.073 Score=52.89 Aligned_cols=24 Identities=13% Similarity=0.158 Sum_probs=21.9
Q ss_pred cEEEEEEcCCCChHHHHHHHHHcc
Q 003890 208 LSVVAILNGSGFDKTAFAADTYNN 231 (788)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~~ 231 (788)
-.+|+|+|+.|+||||||+.+...
T Consensus 5 g~~i~i~G~sGsGKstl~~~l~~~ 28 (205)
T PRK00300 5 GLLIVLSGPSGAGKSTLVKALLER 28 (205)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 468999999999999999999983
No 477
>PRK13409 putative ATPase RIL; Provisional
Probab=92.94 E-value=0.67 Score=53.89 Aligned_cols=24 Identities=29% Similarity=0.307 Sum_probs=21.7
Q ss_pred cEEEEEEcCCCChHHHHHHHHHcc
Q 003890 208 LSVVAILNGSGFDKTAFAADTYNN 231 (788)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~~ 231 (788)
-.+++|+|..|+|||||++.++..
T Consensus 365 Geiv~l~G~NGsGKSTLlk~L~Gl 388 (590)
T PRK13409 365 GEVIGIVGPNGIGKTTFAKLLAGV 388 (590)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 459999999999999999999974
No 478
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=92.89 E-value=0.41 Score=48.66 Aligned_cols=92 Identities=20% Similarity=0.222 Sum_probs=61.3
Q ss_pred CCcccchhcHHHHHHHHhcC----------CCCcEEEEEEcCCCChHHHHHHHHHcccCcccccceeEEEEeCCCCChHH
Q 003890 185 LDISEFERGREELFDLLIEG----------PSGLSVVAILNGSGFDKTAFAADTYNNNHIKFYFDCLAWVRVSIAYDSGK 254 (788)
Q Consensus 185 ~~~vGr~~~~~~i~~~L~~~----------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~ 254 (788)
.++-|.+..++.+.+.+.-. ....+-|-++|++|.||+.||++|... .. ..|++||..
T Consensus 133 sDVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATE--An-----STFFSvSSS----- 200 (439)
T KOG0739|consen 133 SDVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATE--AN-----STFFSVSSS----- 200 (439)
T ss_pred hhhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhh--cC-----CceEEeehH-----
Confidence 77889999999888876432 124678889999999999999999983 22 344556554
Q ss_pred HHHHHHHHcCCCCCCcccccCCHHHHHHHHHHHh-cCCcEEEEEeCCC
Q 003890 255 ILDDIIKSVMPPSRVSVIIGEDYKLKKTILRDYL-TNKKYFIVLDDVF 301 (788)
Q Consensus 255 ~~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~~l-~~kr~LlVLDdvw 301 (788)
++.+...+.. +.+...|.+.- ++|...|.+|.|.
T Consensus 201 ---DLvSKWmGES----------EkLVknLFemARe~kPSIIFiDEiD 235 (439)
T KOG0739|consen 201 ---DLVSKWMGES----------EKLVKNLFEMARENKPSIIFIDEID 235 (439)
T ss_pred ---HHHHHHhccH----------HHHHHHHHHHHHhcCCcEEEeehhh
Confidence 3333333221 23333333333 4688999999985
No 479
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=92.88 E-value=0.33 Score=51.23 Aligned_cols=99 Identities=17% Similarity=0.188 Sum_probs=54.0
Q ss_pred EEEEEEcCCCChHHHHHHHHHcccCcccccc-eeEEEEeCCCCChHHHHHHHHHHcCCCCCCcccccCCHHHHHHHHHHH
Q 003890 209 SVVAILNGSGFDKTAFAADTYNNNHIKFYFD-CLAWVRVSIAYDSGKILDDIIKSVMPPSRVSVIIGEDYKLKKTILRDY 287 (788)
Q Consensus 209 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~-~~~wv~vs~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~~ 287 (788)
+.|.|.|..|+||||+++.+.+ .+....+ .++ +++... .++. +..................+.++..
T Consensus 133 ~~ilI~G~tGSGKTTll~al~~--~i~~~~~~~ri-~tiEd~---~El~------~~~~~~v~~~~~~~~~~~~~~l~~a 200 (299)
T TIGR02782 133 KNILVVGGTGSGKTTLANALLA--EIAKNDPTDRV-VIIEDT---RELQ------CAAPNVVQLRTSDDAISMTRLLKAT 200 (299)
T ss_pred CeEEEECCCCCCHHHHHHHHHH--HhhccCCCceE-EEECCc---hhhc------CCCCCEEEEEecCCCCCHHHHHHHH
Confidence 4567999999999999999987 3333222 222 222221 1110 0000000000000111566777888
Q ss_pred hcCCcEEEEEeCCCCChhhHHHHhhhcCCCCCCc
Q 003890 288 LTNKKYFIVLDDVFNDSDIWDDLEQVLPDNQNGS 321 (788)
Q Consensus 288 l~~kr~LlVLDdvw~~~~~~~~l~~~l~~~~~gs 321 (788)
|+...=-||+..+. +.+.|+-+. +...+..|+
T Consensus 201 LR~~pD~iivGEiR-~~ea~~~l~-a~~tGh~G~ 232 (299)
T TIGR02782 201 LRLRPDRIIVGEVR-GGEALDLLK-AWNTGHPGG 232 (299)
T ss_pred hcCCCCEEEEeccC-CHHHHHHHH-HHHcCCCCe
Confidence 88888889999998 777776443 333344343
No 480
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=92.88 E-value=0.085 Score=47.03 Aligned_cols=22 Identities=23% Similarity=0.407 Sum_probs=19.9
Q ss_pred EEEEcCCCChHHHHHHHHHccc
Q 003890 211 VAILNGSGFDKTAFAADTYNNN 232 (788)
Q Consensus 211 i~I~G~gGiGKTtLa~~v~~~~ 232 (788)
|.|+|..|+|||||.+.+.+..
T Consensus 2 I~V~G~~g~GKTsLi~~l~~~~ 23 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLIRRLCGGE 23 (119)
T ss_dssp EEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEECcCCCCHHHHHHHHhcCC
Confidence 7899999999999999999754
No 481
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=92.88 E-value=0.32 Score=57.11 Aligned_cols=46 Identities=22% Similarity=0.244 Sum_probs=33.0
Q ss_pred CCcccchhcHHHHHHHHh---cCC-------CCcEEEEEEcCCCChHHHHHHHHHc
Q 003890 185 LDISEFERGREELFDLLI---EGP-------SGLSVVAILNGSGFDKTAFAADTYN 230 (788)
Q Consensus 185 ~~~vGr~~~~~~i~~~L~---~~~-------~~~~vi~I~G~gGiGKTtLa~~v~~ 230 (788)
.++.|.+..++++.+.+. ... .-.+-|.++|.+|+||||+|+.+..
T Consensus 152 ~di~g~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~ 207 (644)
T PRK10733 152 ADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAG 207 (644)
T ss_pred HHHcCHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHH
Confidence 677787777666655442 211 1123488999999999999999988
No 482
>TIGR01026 fliI_yscN ATPase FliI/YscN family. This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.
Probab=92.87 E-value=0.28 Score=54.38 Aligned_cols=90 Identities=14% Similarity=0.168 Sum_probs=47.2
Q ss_pred cEEEEEEcCCCChHHHHHHHHHcccCcccccceeEEEEeCCCC-ChHHHHHHHHHHcCCCCCC---cccccCCH-----H
Q 003890 208 LSVVAILNGSGFDKTAFAADTYNNNHIKFYFDCLAWVRVSIAY-DSGKILDDIIKSVMPPSRV---SVIIGEDY-----K 278 (788)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~~~~~il~~l~~~~~~---~~~~~~~~-----~ 278 (788)
-..++|+|..|+|||||++.+..... . +......+.... .+.++..+.+..-...... ...+.... -
T Consensus 163 Gq~~~I~G~sG~GKStLl~~I~~~~~---~-~~~vi~~iG~r~~ev~~~~~~~~~~~~l~~tvvv~~~~d~~p~~r~~~~ 238 (440)
T TIGR01026 163 GQRIGIFAGSGVGKSTLLGMIARNTE---A-DVNVIALIGERGREVREFIEHDLGEEGLKRSVVVVATSDQSPLLRLKGA 238 (440)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCC---C-CEEEEEEEeecchHHHHHHHHHhcccccceEEEEEECCCCCHHHHHHHH
Confidence 45789999999999999999987321 1 223334444433 3344443333321111000 00001011 1
Q ss_pred HHHHHHHHHh--cCCcEEEEEeCCC
Q 003890 279 LKKTILRDYL--TNKKYFIVLDDVF 301 (788)
Q Consensus 279 ~~~~~l~~~l--~~kr~LlVLDdvw 301 (788)
...-.+.+++ +|+++|+++||+-
T Consensus 239 ~~a~t~AE~frd~G~~Vll~~DslT 263 (440)
T TIGR01026 239 YVATAIAEYFRDQGKDVLLLMDSVT 263 (440)
T ss_pred HHHHHHHHHHHHCCCCEEEEEeChH
Confidence 1122244444 6899999999995
No 483
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=92.87 E-value=0.28 Score=53.82 Aligned_cols=46 Identities=15% Similarity=0.067 Sum_probs=35.2
Q ss_pred CCcccchhcHHHHHHHHh-------c---CC--C----CcEEEEEEcCCCChHHHHHHHHHc
Q 003890 185 LDISEFERGREELFDLLI-------E---GP--S----GLSVVAILNGSGFDKTAFAADTYN 230 (788)
Q Consensus 185 ~~~vGr~~~~~~i~~~L~-------~---~~--~----~~~vi~I~G~gGiGKTtLa~~v~~ 230 (788)
..++|.+..++.+...+. . .. . ....|.++|++|+|||++|+.+..
T Consensus 77 ~~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~ 138 (413)
T TIGR00382 77 EYVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLAR 138 (413)
T ss_pred ceecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHH
Confidence 568999999988876551 1 11 0 135788999999999999999987
No 484
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=92.87 E-value=0.79 Score=54.83 Aligned_cols=23 Identities=22% Similarity=0.133 Sum_probs=20.9
Q ss_pred cEEEEEEcCCCChHHHHHHHHHc
Q 003890 208 LSVVAILNGSGFDKTAFAADTYN 230 (788)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~ 230 (788)
-..++|+|..|.|||||++.+..
T Consensus 491 G~~iaIvG~sGsGKSTLlklL~g 513 (694)
T TIGR03375 491 GEKVAIIGRIGSGKSTLLKLLLG 513 (694)
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 46899999999999999999876
No 485
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=92.87 E-value=0.22 Score=54.06 Aligned_cols=87 Identities=10% Similarity=0.038 Sum_probs=49.2
Q ss_pred CcEEEEEEcCCCChHHHHHHHHHcccCcccccceeEEEEeCCCCChHHHHHHHHHHcCCCCCCc-ccccCCHHHHHHHHH
Q 003890 207 GLSVVAILNGSGFDKTAFAADTYNNNHIKFYFDCLAWVRVSIAYDSGKILDDIIKSVMPPSRVS-VIIGEDYKLKKTILR 285 (788)
Q Consensus 207 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~~l~~~~~~~-~~~~~~~~~~~~~l~ 285 (788)
.-.++.|.|.+|+|||||+.+++.. ....-..++|++..+. ...+. .-++.++...... .....+.+.+...+.
T Consensus 81 ~GslvLI~G~pG~GKStLllq~a~~--~a~~g~~VlYvs~EEs--~~qi~-~Ra~rlg~~~~~l~l~~e~~le~I~~~i~ 155 (372)
T cd01121 81 PGSVILIGGDPGIGKSTLLLQVAAR--LAKRGGKVLYVSGEES--PEQIK-LRADRLGISTENLYLLAETNLEDILASIE 155 (372)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHH--HHhcCCeEEEEECCcC--HHHHH-HHHHHcCCCcccEEEEccCcHHHHHHHHH
Confidence 3569999999999999999988763 3222245778765433 22222 2234444322110 011233444444442
Q ss_pred HHhcCCcEEEEEeCCC
Q 003890 286 DYLTNKKYFIVLDDVF 301 (788)
Q Consensus 286 ~~l~~kr~LlVLDdvw 301 (788)
+.+.-++|+|.+.
T Consensus 156 ---~~~~~lVVIDSIq 168 (372)
T cd01121 156 ---ELKPDLVIIDSIQ 168 (372)
T ss_pred ---hcCCcEEEEcchH
Confidence 2356688899884
No 486
>PRK04182 cytidylate kinase; Provisional
Probab=92.87 E-value=0.16 Score=49.09 Aligned_cols=22 Identities=23% Similarity=0.217 Sum_probs=20.5
Q ss_pred EEEEEcCCCChHHHHHHHHHcc
Q 003890 210 VVAILNGSGFDKTAFAADTYNN 231 (788)
Q Consensus 210 vi~I~G~gGiGKTtLa~~v~~~ 231 (788)
+|.|.|+.|+||||+|+.+.+.
T Consensus 2 ~I~i~G~~GsGKstia~~la~~ 23 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEK 23 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999983
No 487
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=92.83 E-value=0.17 Score=45.09 Aligned_cols=47 Identities=11% Similarity=0.025 Sum_probs=34.6
Q ss_pred CCcccchhcHHHHHHHHhc----C-CCCcEEEEEEcCCCChHHHHHHHHHcc
Q 003890 185 LDISEFERGREELFDLLIE----G-PSGLSVVAILNGSGFDKTAFAADTYNN 231 (788)
Q Consensus 185 ~~~vGr~~~~~~i~~~L~~----~-~~~~~vi~I~G~gGiGKTtLa~~v~~~ 231 (788)
..++|-+-..+.|++.+.. . .+..-|++..|.+|+|||.+|+.+.+.
T Consensus 25 ~~l~GQhla~~~v~~ai~~~l~~~~p~KpLVlSfHG~tGtGKn~v~~liA~~ 76 (127)
T PF06309_consen 25 RNLFGQHLAVEVVVNAIKGHLANPNPRKPLVLSFHGWTGTGKNFVSRLIAEH 76 (127)
T ss_pred HHccCcHHHHHHHHHHHHHHHcCCCCCCCEEEEeecCCCCcHHHHHHHHHHH
Confidence 4577876666666666543 2 346789999999999999987777664
No 488
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=92.83 E-value=0.31 Score=55.77 Aligned_cols=47 Identities=11% Similarity=-0.059 Sum_probs=36.6
Q ss_pred CCCcccchhcHHHHHHHHhcCCCCcEEEEEEcCCCChHHHHHHHHHc
Q 003890 184 RLDISEFERGREELFDLLIEGPSGLSVVAILNGSGFDKTAFAADTYN 230 (788)
Q Consensus 184 ~~~~vGr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 230 (788)
|.+++|....+.++++.+..-...-.-|-|+|..|+||+++|+.++.
T Consensus 203 f~~~ig~s~~~~~~~~~~~~~A~~~~pvlI~GE~GtGK~~lA~aiH~ 249 (520)
T PRK10820 203 FSQIVAVSPKMRQVVEQARKLAMLDAPLLITGDTGTGKDLLAYACHL 249 (520)
T ss_pred ccceeECCHHHHHHHHHHHHHhCCCCCEEEECCCCccHHHHHHHHHH
Confidence 37899999888888877753221233467999999999999999876
No 489
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=92.83 E-value=0.086 Score=51.51 Aligned_cols=23 Identities=17% Similarity=0.248 Sum_probs=20.7
Q ss_pred EEEEEEcCCCChHHHHHHHHHcc
Q 003890 209 SVVAILNGSGFDKTAFAADTYNN 231 (788)
Q Consensus 209 ~vi~I~G~gGiGKTtLa~~v~~~ 231 (788)
.++.|+|+.|+|||||++.+...
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~ 25 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQR 25 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhcc
Confidence 37899999999999999999873
No 490
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=92.82 E-value=0.15 Score=51.31 Aligned_cols=38 Identities=18% Similarity=0.211 Sum_probs=29.5
Q ss_pred cHHHHHHHHhcCCCCcEEEEEEcCCCChHHHHHHHHHc
Q 003890 193 GREELFDLLIEGPSGLSVVAILNGSGFDKTAFAADTYN 230 (788)
Q Consensus 193 ~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 230 (788)
...++++.+.....+..+|+|.|.||+||+||.-.+..
T Consensus 14 ~~~~ll~~l~~~~g~a~~iGiTG~PGaGKSTli~~l~~ 51 (266)
T PF03308_consen 14 EARELLKRLYPHTGRAHVIGITGPPGAGKSTLIDALIR 51 (266)
T ss_dssp HHHHHHHHHGGGTT-SEEEEEEE-TTSSHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCCceEEEeeCCCCCcHHHHHHHHHH
Confidence 45667777766555688999999999999999988776
No 491
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=92.80 E-value=0.39 Score=46.47 Aligned_cols=122 Identities=11% Similarity=-0.004 Sum_probs=62.7
Q ss_pred cEEEEEEcCCCChHHHHHHHHHcccCcccccce--eEEEEeCCCCChHHHHHHHH--HHc--CCCCC-Ccccc---cCCH
Q 003890 208 LSVVAILNGSGFDKTAFAADTYNNNHIKFYFDC--LAWVRVSIAYDSGKILDDII--KSV--MPPSR-VSVII---GEDY 277 (788)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~--~~wv~vs~~~~~~~~~~~il--~~l--~~~~~-~~~~~---~~~~ 277 (788)
...|-|+|..|-||||.|..+.-. ....-+.. +-|+.-...+.....++.+- .-. +.... ..... ....
T Consensus 22 ~g~v~v~~g~GkGKtt~a~g~a~r-a~g~G~~V~ivQFlKg~~~~GE~~~l~~l~~v~~~~~g~~~~~~~~~~~e~~~~~ 100 (191)
T PRK05986 22 KGLLIVHTGNGKGKSTAAFGMALR-AVGHGKKVGVVQFIKGAWSTGERNLLEFGGGVEFHVMGTGFTWETQDRERDIAAA 100 (191)
T ss_pred CCeEEEECCCCCChHHHHHHHHHH-HHHCCCeEEEEEEecCCCccCHHHHHhcCCCcEEEECCCCCcccCCCcHHHHHHH
Confidence 568899999999999998776652 12222222 22222221334333333310 000 11000 00000 0111
Q ss_pred HHHHHHHHHHhcCC-cEEEEEeCCCC----ChhhHHHHhhhcCCCCCCcEEEEecCCh
Q 003890 278 KLKKTILRDYLTNK-KYFIVLDDVFN----DSDIWDDLEQVLPDNQNGSRVLITVTDL 330 (788)
Q Consensus 278 ~~~~~~l~~~l~~k-r~LlVLDdvw~----~~~~~~~l~~~l~~~~~gskIivTTR~~ 330 (788)
...-+..++.+... -=|+|||.+-. .--+.+++...+.....+.-||+|=|+.
T Consensus 101 ~~~~~~a~~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~ 158 (191)
T PRK05986 101 REGWEEAKRMLADESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGA 158 (191)
T ss_pred HHHHHHHHHHHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCC
Confidence 22233445555444 44999999941 2234566666666666678999999974
No 492
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=92.80 E-value=1.1 Score=50.50 Aligned_cols=24 Identities=17% Similarity=0.140 Sum_probs=21.8
Q ss_pred cEEEEEEcCCCChHHHHHHHHHcc
Q 003890 208 LSVVAILNGSGFDKTAFAADTYNN 231 (788)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~~ 231 (788)
-.+++|+|..|.|||||++.+..-
T Consensus 50 GEivgIiGpNGSGKSTLLkiLaGL 73 (549)
T PRK13545 50 GEIVGIIGLNGSGKSTLSNLIAGV 73 (549)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCC
Confidence 468999999999999999999874
No 493
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=92.77 E-value=0.09 Score=60.19 Aligned_cols=48 Identities=25% Similarity=0.112 Sum_probs=38.5
Q ss_pred CCCCCCcccchhcHHHHHHHHhcCCCCcEEEEEEcCCCChHHHHHHHHHc
Q 003890 181 GQPRLDISEFERGREELFDLLIEGPSGLSVVAILNGSGFDKTAFAADTYN 230 (788)
Q Consensus 181 ~~~~~~~vGr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 230 (788)
+..|.+++|.+..++.+...+.... ..-+-|+|.+|+|||++|+.+++
T Consensus 61 p~~f~~iiGqs~~i~~l~~al~~~~--~~~vLi~Ge~GtGKt~lAr~i~~ 108 (531)
T TIGR02902 61 PKSFDEIIGQEEGIKALKAALCGPN--PQHVIIYGPPGVGKTAAARLVLE 108 (531)
T ss_pred cCCHHHeeCcHHHHHHHHHHHhCCC--CceEEEECCCCCCHHHHHHHHHH
Confidence 3444779999999999988775543 34557899999999999999986
No 494
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=92.76 E-value=0.83 Score=46.18 Aligned_cols=40 Identities=20% Similarity=0.135 Sum_probs=28.4
Q ss_pred CcEEEEEEcCCCChHHHHHHHHHcccCcccccceeEEEEeCC
Q 003890 207 GLSVVAILNGSGFDKTAFAADTYNNNHIKFYFDCLAWVRVSI 248 (788)
Q Consensus 207 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~ 248 (788)
.-.++.|.|.+|+||||||.++.... .+ .-...+|++...
T Consensus 19 ~G~~~~i~G~~G~GKT~l~~~~~~~~-~~-~g~~~~~is~e~ 58 (229)
T TIGR03881 19 RGFFVAVTGEPGTGKTIFCLHFAYKG-LR-DGDPVIYVTTEE 58 (229)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHHH-Hh-cCCeEEEEEccC
Confidence 46799999999999999998765421 12 223577877643
No 495
>PRK14530 adenylate kinase; Provisional
Probab=92.76 E-value=0.08 Score=53.09 Aligned_cols=21 Identities=14% Similarity=0.229 Sum_probs=19.7
Q ss_pred EEEEEcCCCChHHHHHHHHHc
Q 003890 210 VVAILNGSGFDKTAFAADTYN 230 (788)
Q Consensus 210 vi~I~G~gGiGKTtLa~~v~~ 230 (788)
.|.|+|++|+||||+|+.+..
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~ 25 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAE 25 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 688999999999999999987
No 496
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=92.76 E-value=0.75 Score=44.72 Aligned_cols=24 Identities=21% Similarity=0.072 Sum_probs=22.0
Q ss_pred CcEEEEEEcCCCChHHHHHHHHHc
Q 003890 207 GLSVVAILNGSGFDKTAFAADTYN 230 (788)
Q Consensus 207 ~~~vi~I~G~gGiGKTtLa~~v~~ 230 (788)
...+|.|.|.+|+||||+|+.+..
T Consensus 17 ~~~~i~i~G~~GsGKstla~~l~~ 40 (184)
T TIGR00455 17 RGVVIWLTGLSGSGKSTIANALEK 40 (184)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 357999999999999999999987
No 497
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=92.76 E-value=0.08 Score=49.76 Aligned_cols=20 Identities=15% Similarity=0.140 Sum_probs=18.9
Q ss_pred EEEEcCCCChHHHHHHHHHc
Q 003890 211 VAILNGSGFDKTAFAADTYN 230 (788)
Q Consensus 211 i~I~G~gGiGKTtLa~~v~~ 230 (788)
|.++|++|+||||+|+.+..
T Consensus 2 i~l~G~~GsGKstla~~la~ 21 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAK 21 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHH
Confidence 68999999999999999987
No 498
>PRK07960 fliI flagellum-specific ATP synthase; Validated
Probab=92.73 E-value=0.29 Score=53.86 Aligned_cols=24 Identities=17% Similarity=0.213 Sum_probs=21.5
Q ss_pred cEEEEEEcCCCChHHHHHHHHHcc
Q 003890 208 LSVVAILNGSGFDKTAFAADTYNN 231 (788)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~~ 231 (788)
-..++|+|..|+|||||.+.+...
T Consensus 175 Gqri~I~G~sG~GKTTLL~~Ia~~ 198 (455)
T PRK07960 175 GQRMGLFAGSGVGKSVLLGMMARY 198 (455)
T ss_pred CcEEEEECCCCCCccHHHHHHhCC
Confidence 467999999999999999999873
No 499
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=92.72 E-value=0.42 Score=49.33 Aligned_cols=40 Identities=18% Similarity=0.076 Sum_probs=28.5
Q ss_pred CcEEEEEEcCCCChHHHHHHHHHcccCcccccceeEEEEeCC
Q 003890 207 GLSVVAILNGSGFDKTAFAADTYNNNHIKFYFDCLAWVRVSI 248 (788)
Q Consensus 207 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~ 248 (788)
.-+++-|.|.+|+|||++|.++.... .+. =..++|++...
T Consensus 35 ~gs~~lI~G~pGtGKT~l~~qf~~~~-a~~-Ge~vlyis~Ee 74 (259)
T TIGR03878 35 AYSVINITGVSDTGKSLMVEQFAVTQ-ASR-GNPVLFVTVES 74 (259)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH-HhC-CCcEEEEEecC
Confidence 46789999999999999998865421 122 22477887754
No 500
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=92.70 E-value=0.091 Score=50.58 Aligned_cols=24 Identities=8% Similarity=0.109 Sum_probs=21.3
Q ss_pred cEEEEEEcCCCChHHHHHHHHHcc
Q 003890 208 LSVVAILNGSGFDKTAFAADTYNN 231 (788)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~~ 231 (788)
...|.|+|+.|+||||+|+.+.+.
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~ 27 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQ 27 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHH
Confidence 346899999999999999999983
Done!