Query 003890
Match_columns 788
No_of_seqs 517 out of 4163
Neff 9.2
Searched_HMMs 29240
Date Mon Mar 25 07:24:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003890.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003890hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 100.0 1.2E-41 4.2E-46 390.3 17.8 276 188-486 131-473 (549)
2 1vt4_I APAF-1 related killer D 100.0 2.7E-34 9.2E-39 332.6 16.7 258 185-477 128-436 (1221)
3 3sfz_A APAF-1, apoptotic pepti 100.0 1.3E-33 4.4E-38 357.2 23.4 279 185-484 124-452 (1249)
4 1z6t_A APAF-1, apoptotic prote 100.0 3.3E-29 1.1E-33 291.2 22.9 275 185-481 124-449 (591)
5 4fcg_A Uncharacterized protein 99.9 9.4E-22 3.2E-26 210.5 16.9 220 546-775 79-311 (328)
6 1ogq_A PGIP-2, polygalacturona 99.9 1.7E-22 5.9E-27 214.9 9.7 245 520-778 50-304 (313)
7 3v47_A TOLL-like receptor 5B a 99.9 3.3E-21 1.1E-25 216.4 19.5 268 496-776 28-406 (455)
8 3o6n_A APL1; leucine-rich repe 99.9 3.4E-21 1.2E-25 211.7 17.3 258 497-776 44-350 (390)
9 3oja_B Anopheles plasmodium-re 99.8 5.5E-21 1.9E-25 222.0 16.8 258 497-776 50-356 (597)
10 4fmz_A Internalin; leucine ric 99.8 4.6E-20 1.6E-24 199.2 20.0 254 497-776 65-322 (347)
11 2id5_A Lingo-1, leucine rich r 99.8 2.4E-20 8.1E-25 210.8 18.4 269 496-776 30-331 (477)
12 1xku_A Decorin; proteoglycan, 99.8 5.9E-20 2E-24 197.0 19.9 261 499-777 32-305 (330)
13 4eco_A Uncharacterized protein 99.8 5.8E-21 2E-25 223.2 12.9 224 540-775 198-467 (636)
14 4fmz_A Internalin; leucine ric 99.8 9.2E-20 3.1E-24 196.9 21.1 252 497-777 43-299 (347)
15 2id5_A Lingo-1, leucine rich r 99.8 8.9E-20 3.1E-24 206.0 20.6 245 497-752 55-335 (477)
16 3rgz_A Protein brassinosteroid 99.8 3.7E-20 1.2E-24 221.4 17.0 245 519-776 393-715 (768)
17 2ft3_A Biglycan; proteoglycan, 99.8 6.4E-20 2.2E-24 196.9 16.8 218 519-751 53-278 (332)
18 3zyi_A Leucine-rich repeat-con 99.8 1.2E-19 3.9E-24 203.6 19.4 240 501-775 57-300 (452)
19 3zyj_A Leucine-rich repeat-con 99.8 1.1E-19 3.8E-24 203.0 18.8 192 502-700 47-242 (440)
20 2z66_A Variable lymphocyte rec 99.8 3.9E-20 1.3E-24 196.1 14.4 176 519-700 27-210 (306)
21 4fcg_A Uncharacterized protein 99.8 3.4E-20 1.2E-24 198.4 13.7 221 519-750 80-314 (328)
22 3rgz_A Protein brassinosteroid 99.8 5.4E-20 1.8E-24 219.9 15.1 267 497-778 393-740 (768)
23 3o6n_A APL1; leucine-rich repe 99.8 8.9E-20 3.1E-24 200.4 15.7 243 515-776 41-329 (390)
24 3vq2_A TLR4, TOLL-like recepto 99.8 1.2E-19 3.9E-24 211.6 16.9 129 496-629 30-165 (606)
25 4ecn_A Leucine-rich repeat pro 99.8 2.2E-19 7.6E-24 213.8 18.8 262 497-774 490-785 (876)
26 4ecn_A Leucine-rich repeat pro 99.8 9.2E-20 3.1E-24 217.1 15.5 158 540-701 440-631 (876)
27 3oja_B Anopheles plasmodium-re 99.8 1E-19 3.5E-24 211.2 15.6 244 515-777 47-336 (597)
28 2z80_A TOLL-like receptor 2, v 99.8 1E-19 3.4E-24 197.1 14.0 258 503-776 36-312 (353)
29 4eco_A Uncharacterized protein 99.8 1.4E-19 4.9E-24 211.3 16.3 258 497-774 248-545 (636)
30 2z7x_B TOLL-like receptor 1, v 99.8 3.5E-19 1.2E-23 203.5 18.9 267 496-776 19-479 (520)
31 1o6v_A Internalin A; bacterial 99.8 6E-19 2E-23 198.6 20.0 187 498-699 68-275 (466)
32 3v47_A TOLL-like receptor 5B a 99.8 4E-19 1.4E-23 199.4 18.2 247 519-776 29-382 (455)
33 1ogq_A PGIP-2, polygalacturona 99.8 7.3E-20 2.5E-24 194.6 11.4 218 548-776 50-279 (313)
34 3a79_B TLR6, VLRB.59, TOLL-lik 99.8 7.3E-19 2.5E-23 202.8 20.0 265 496-776 50-508 (562)
35 1o6v_A Internalin A; bacterial 99.8 5.3E-19 1.8E-23 199.0 18.0 252 498-776 46-320 (466)
36 2ft3_A Biglycan; proteoglycan, 99.8 1.3E-18 4.5E-23 186.6 19.7 261 496-776 52-331 (332)
37 2z7x_B TOLL-like receptor 1, v 99.8 4.4E-19 1.5E-23 202.7 16.7 123 501-630 3-128 (520)
38 3t6q_A CD180 antigen; protein- 99.8 8.3E-19 2.8E-23 204.3 19.0 265 497-776 277-558 (606)
39 3j0a_A TOLL-like receptor 5; m 99.8 1.2E-18 4E-23 210.6 20.3 268 496-776 22-373 (844)
40 3t6q_A CD180 antigen; protein- 99.8 8E-19 2.7E-23 204.5 17.6 264 499-776 255-534 (606)
41 1xku_A Decorin; proteoglycan, 99.8 3.4E-18 1.2E-22 183.2 21.0 261 496-775 50-329 (330)
42 2z63_A TOLL-like receptor 4, v 99.8 6.3E-19 2.1E-23 203.7 16.0 128 496-628 26-160 (570)
43 3vq2_A TLR4, TOLL-like recepto 99.8 1.1E-18 3.7E-23 203.4 17.5 118 496-618 54-178 (606)
44 3a79_B TLR6, VLRB.59, TOLL-lik 99.8 1.7E-18 5.9E-23 199.6 18.0 141 500-650 33-178 (562)
45 2z81_A CD282 antigen, TOLL-lik 99.8 9.7E-19 3.3E-23 201.2 13.2 149 496-649 24-180 (549)
46 2z63_A TOLL-like receptor 4, v 99.8 2.1E-18 7.2E-23 199.3 16.0 108 497-609 51-164 (570)
47 1ozn_A Reticulon 4 receptor; N 99.8 3.7E-18 1.3E-22 178.9 16.3 148 549-698 33-186 (285)
48 1ziw_A TOLL-like receptor 3; i 99.8 2.4E-18 8.1E-23 203.3 16.0 268 496-776 23-364 (680)
49 3j0a_A TOLL-like receptor 5; m 99.8 1.2E-17 4.1E-22 201.7 21.3 261 496-776 46-392 (844)
50 1wwl_A Monocyte differentiatio 99.8 3.4E-19 1.2E-23 189.4 6.6 239 519-776 42-307 (312)
51 3bz5_A Internalin-J, INLJ; leu 99.8 1.3E-17 4.4E-22 186.5 18.8 245 497-778 41-299 (457)
52 3bz5_A Internalin-J, INLJ; leu 99.7 2.8E-17 9.4E-22 183.8 20.7 252 497-776 63-329 (457)
53 1ziw_A TOLL-like receptor 3; i 99.7 1E-17 3.4E-22 198.0 17.8 243 519-774 24-305 (680)
54 3o53_A Protein LRIM1, AGAP0063 99.7 4.6E-19 1.6E-23 188.8 5.1 237 519-778 33-275 (317)
55 1ozn_A Reticulon 4 receptor; N 99.7 1.6E-17 5.5E-22 174.0 16.2 193 501-700 14-212 (285)
56 2z81_A CD282 antigen, TOLL-lik 99.7 7.2E-18 2.4E-22 194.0 14.6 106 497-607 49-161 (549)
57 3g06_A SSPH2 (leucine-rich rep 99.7 4.8E-17 1.6E-21 187.5 20.4 234 497-777 60-296 (622)
58 3o53_A Protein LRIM1, AGAP0063 99.7 5.2E-18 1.8E-22 180.6 10.8 222 536-778 22-250 (317)
59 3oja_A Leucine-rich immune mol 99.7 1.1E-18 3.9E-23 196.8 5.7 232 519-773 33-270 (487)
60 2z80_A TOLL-like receptor 2, v 99.7 8.1E-18 2.8E-22 182.1 11.9 250 496-752 50-316 (353)
61 2z66_A Variable lymphocyte rec 99.7 1.3E-17 4.6E-22 176.5 12.6 219 548-776 28-259 (306)
62 3oja_A Leucine-rich immune mol 99.7 7.5E-18 2.6E-22 190.1 11.2 216 542-778 28-250 (487)
63 1h6u_A Internalin H; cell adhe 99.7 2E-17 6.8E-22 175.2 13.8 190 519-752 40-232 (308)
64 2o6q_A Variable lymphocyte rec 99.7 9.3E-17 3.2E-21 166.8 17.8 178 548-752 37-220 (270)
65 3zyj_A Leucine-rich repeat-con 99.7 6.7E-17 2.3E-21 180.4 16.7 218 548-776 64-290 (440)
66 3zyi_A Leucine-rich repeat-con 99.7 7.1E-17 2.4E-21 180.8 16.3 196 548-776 75-277 (452)
67 4g8a_A TOLL-like receptor 4; l 99.7 9.8E-17 3.3E-21 187.6 18.1 127 496-627 50-183 (635)
68 2z62_A TOLL-like receptor 4, v 99.7 6.3E-17 2.2E-21 168.6 14.5 197 548-751 28-238 (276)
69 2ca6_A RAN GTPase-activating p 99.7 8.3E-18 2.8E-22 184.4 5.1 252 519-777 31-342 (386)
70 1h6u_A Internalin H; cell adhe 99.7 4.2E-16 1.4E-20 165.1 16.0 187 497-699 40-227 (308)
71 3rfs_A Internalin B, repeat mo 99.7 5E-16 1.7E-20 161.4 15.9 202 519-739 40-248 (272)
72 1p9a_G Platelet glycoprotein I 99.7 6.2E-16 2.1E-20 162.1 15.8 175 548-751 31-209 (290)
73 2z62_A TOLL-like receptor 4, v 99.7 3.6E-16 1.2E-20 162.8 13.6 212 552-775 11-234 (276)
74 1jl5_A Outer protein YOPM; leu 99.7 2.1E-15 7.1E-20 168.4 19.6 244 497-776 90-368 (454)
75 2o6q_A Variable lymphocyte rec 99.7 1.8E-15 6.2E-20 157.0 17.8 173 520-698 37-214 (270)
76 3g06_A SSPH2 (leucine-rich rep 99.6 7E-16 2.4E-20 177.8 15.6 218 496-752 79-299 (622)
77 1jl5_A Outer protein YOPM; leu 99.6 1.6E-15 5.4E-20 169.4 18.0 247 498-777 131-408 (454)
78 2xwt_C Thyrotropin receptor; s 99.6 5.6E-16 1.9E-20 157.7 12.3 195 549-778 32-239 (239)
79 2ast_B S-phase kinase-associat 99.6 1E-16 3.5E-21 172.1 5.8 200 546-775 91-303 (336)
80 3rfs_A Internalin B, repeat mo 99.6 7.9E-16 2.7E-20 159.9 12.1 206 543-766 36-247 (272)
81 1wwl_A Monocyte differentiatio 99.6 1.8E-16 6E-21 168.4 7.1 196 546-751 93-310 (312)
82 4glp_A Monocyte differentiatio 99.6 1E-15 3.5E-20 162.3 12.8 227 519-776 63-305 (310)
83 1p9a_G Platelet glycoprotein I 99.6 3.8E-15 1.3E-19 156.1 15.6 195 497-700 9-206 (290)
84 1h6t_A Internalin B; cell adhe 99.6 2.8E-15 9.5E-20 157.3 12.8 102 519-629 45-146 (291)
85 1z7x_W Ribonuclease inhibitor; 99.6 7.6E-17 2.6E-21 181.1 -2.2 253 519-776 55-352 (461)
86 1m9s_A Internalin B; cell inva 99.6 4.3E-15 1.5E-19 171.0 11.7 145 519-674 42-186 (605)
87 3m19_A Variable lymphocyte rec 99.6 2.8E-14 9.5E-19 146.3 16.0 81 549-629 36-119 (251)
88 3cvr_A Invasion plasmid antige 99.6 5.2E-15 1.8E-19 168.5 10.4 185 549-765 60-254 (571)
89 2xwt_C Thyrotropin receptor; s 99.6 7.5E-15 2.6E-19 149.3 10.1 196 519-748 30-237 (239)
90 1m9s_A Internalin B; cell inva 99.5 4.4E-15 1.5E-19 170.9 8.8 188 544-770 39-226 (605)
91 2ca6_A RAN GTPase-activating p 99.5 1.9E-15 6.4E-20 165.6 4.6 247 498-747 32-340 (386)
92 1h6t_A Internalin B; cell adhe 99.5 5E-14 1.7E-18 147.7 14.7 165 498-674 46-211 (291)
93 3m19_A Variable lymphocyte rec 99.5 7.9E-14 2.7E-18 142.8 14.8 175 548-751 14-193 (251)
94 1z7x_W Ribonuclease inhibitor; 99.5 7.8E-16 2.7E-20 172.8 -0.8 275 497-776 2-324 (461)
95 2ast_B S-phase kinase-associat 99.5 2.6E-15 8.9E-20 161.0 2.3 222 521-775 48-282 (336)
96 4ezg_A Putative uncharacterize 99.5 7.4E-14 2.5E-18 137.4 10.9 152 568-776 41-192 (197)
97 4ezg_A Putative uncharacterize 99.5 2.6E-14 8.9E-19 140.7 7.6 147 519-673 43-191 (197)
98 4g8a_A TOLL-like receptor 4; l 99.5 1.8E-13 6.1E-18 159.9 16.0 258 499-775 307-577 (635)
99 1xeu_A Internalin C; cellular 99.5 3.3E-14 1.1E-18 146.6 8.3 124 544-673 37-160 (263)
100 2o6s_A Variable lymphocyte rec 99.5 4E-13 1.4E-17 133.4 14.0 163 549-749 29-197 (208)
101 3goz_A Leucine-rich repeat-con 99.5 1.2E-14 4.2E-19 157.6 3.2 182 519-700 21-236 (362)
102 4glp_A Monocyte differentiatio 99.5 2.9E-13 1E-17 143.3 13.2 192 500-698 93-303 (310)
103 3ogk_B Coronatine-insensitive 99.4 2.5E-14 8.5E-19 165.9 4.6 274 498-777 112-448 (592)
104 4ay9_X Follicle-stimulating ho 99.4 3E-13 1E-17 145.9 12.4 214 548-774 30-255 (350)
105 3ogk_B Coronatine-insensitive 99.4 1.5E-14 5.1E-19 167.8 1.8 59 714-776 462-524 (592)
106 1xeu_A Internalin C; cellular 99.4 2E-13 7E-18 140.7 9.3 147 515-674 37-183 (263)
107 3qfl_A MLA10; coiled-coil, (CC 99.4 3E-13 1E-17 118.9 9.0 78 33-124 4-84 (115)
108 2o6s_A Variable lymphocyte rec 99.4 4.5E-13 1.5E-17 132.9 10.3 159 519-688 27-188 (208)
109 4ay9_X Follicle-stimulating ho 99.4 6.1E-13 2.1E-17 143.4 11.9 235 503-749 14-258 (350)
110 3cvr_A Invasion plasmid antige 99.4 1.1E-12 3.9E-17 149.2 13.6 173 572-777 60-242 (571)
111 2xot_A Amphoterin-induced prot 99.4 1E-12 3.5E-17 142.2 11.5 78 551-630 21-101 (361)
112 4b8c_D Glucose-repressible alc 99.4 1.7E-13 5.9E-18 161.7 5.7 152 497-650 172-325 (727)
113 3goz_A Leucine-rich repeat-con 99.4 1.3E-13 4.4E-18 149.5 3.7 238 539-776 13-295 (362)
114 2v9t_B SLIT homolog 2 protein 99.4 3E-12 1E-16 128.2 12.9 126 548-673 32-162 (220)
115 2v70_A SLIT-2, SLIT homolog 2 99.3 4.1E-12 1.4E-16 127.2 12.2 125 550-698 34-162 (220)
116 3e6j_A Variable lymphocyte rec 99.3 5.9E-12 2E-16 126.8 13.5 108 519-630 39-148 (229)
117 1dce_A Protein (RAB geranylger 99.3 1.4E-14 4.9E-19 165.6 -7.6 116 643-772 443-567 (567)
118 2p1m_B Transport inhibitor res 99.3 8.6E-14 2.9E-18 161.4 -1.7 87 684-777 427-518 (594)
119 3e6j_A Variable lymphocyte rec 99.3 7.2E-12 2.5E-16 126.2 12.6 126 548-674 40-170 (229)
120 2v9t_B SLIT homolog 2 protein 99.3 7E-12 2.4E-16 125.5 12.3 144 503-651 16-162 (220)
121 2v70_A SLIT-2, SLIT homolog 2 99.3 6.3E-12 2.2E-16 125.8 11.9 145 501-649 14-161 (220)
122 2ell_A Acidic leucine-rich nuc 99.3 7.1E-12 2.4E-16 119.6 10.0 128 519-650 23-156 (168)
123 2p1m_B Transport inhibitor res 99.3 2.7E-13 9.4E-18 157.1 0.1 270 498-774 105-441 (594)
124 2je0_A Acidic leucine-rich nuc 99.3 4.3E-12 1.5E-16 118.5 7.5 127 519-649 16-148 (149)
125 2je0_A Acidic leucine-rich nuc 99.3 3.8E-12 1.3E-16 118.9 6.1 129 545-697 14-148 (149)
126 2ell_A Acidic leucine-rich nuc 99.3 1.1E-11 3.8E-16 118.3 9.1 131 545-700 21-158 (168)
127 1w5s_A Origin recognition comp 99.3 9.5E-11 3.3E-15 129.1 17.9 144 185-333 22-192 (412)
128 1a9n_A U2A', U2A'; complex (nu 99.2 1.4E-11 4.7E-16 118.6 6.9 83 545-629 16-100 (176)
129 2wfh_A SLIT homolog 2 protein 99.2 7.2E-11 2.5E-15 115.4 11.9 122 551-674 13-137 (193)
130 2xot_A Amphoterin-induced prot 99.2 2.2E-11 7.5E-16 131.7 8.7 124 502-630 22-149 (361)
131 4b8c_D Glucose-repressible alc 99.2 1.2E-11 4E-16 146.0 4.9 119 515-639 220-338 (727)
132 1w8a_A SLIT protein; signaling 99.2 8.5E-11 2.9E-15 114.8 10.3 97 551-649 11-110 (192)
133 1a9n_A U2A', U2A'; complex (nu 99.2 5.1E-11 1.7E-15 114.7 8.2 127 515-649 15-148 (176)
134 1dce_A Protein (RAB geranylger 99.1 1.3E-10 4.3E-15 133.0 11.3 98 550-649 443-541 (567)
135 3sb4_A Hypothetical leucine ri 99.1 1.9E-10 6.6E-15 122.6 9.8 237 519-772 24-328 (329)
136 1w8a_A SLIT protein; signaling 99.1 3.2E-10 1.1E-14 110.7 10.1 124 502-630 12-139 (192)
137 1ds9_A Outer arm dynein; leuci 99.1 2.6E-12 8.8E-17 126.4 -5.2 129 542-695 42-180 (198)
138 1fnn_A CDC6P, cell division co 99.0 1.4E-08 4.8E-13 110.7 22.7 144 185-333 17-172 (389)
139 2o6r_A Variable lymphocyte rec 99.0 1E-09 3.4E-14 105.6 11.5 125 502-631 11-138 (177)
140 2wfh_A SLIT homolog 2 protein 99.0 1.1E-09 3.7E-14 106.9 11.0 123 574-700 13-137 (193)
141 2o6r_A Variable lymphocyte rec 99.0 1.7E-09 5.7E-14 104.0 12.1 78 551-630 10-89 (177)
142 2v1u_A Cell division control p 99.0 2.4E-08 8.1E-13 108.7 21.3 140 185-330 19-177 (387)
143 1ds9_A Outer arm dynein; leuci 99.0 8.1E-12 2.8E-16 122.8 -6.4 125 498-630 23-153 (198)
144 2qen_A Walker-type ATPase; unk 98.9 1.5E-08 5E-13 108.7 17.4 135 185-332 12-176 (350)
145 3g39_A Variable lymphocyte rec 98.9 3.9E-09 1.3E-13 100.7 10.1 82 548-629 30-114 (170)
146 2r9u_A Variable lymphocyte rec 98.9 4.7E-09 1.6E-13 100.5 10.1 83 548-630 33-118 (174)
147 4fdw_A Leucine rich hypothetic 98.8 6.5E-08 2.2E-12 105.5 18.3 233 521-775 136-380 (401)
148 3g39_A Variable lymphocyte rec 98.8 1.3E-08 4.4E-13 97.0 9.7 100 550-651 11-112 (170)
149 2r9u_A Variable lymphocyte rec 98.8 1.6E-08 5.5E-13 96.8 9.7 112 501-617 15-128 (174)
150 2qby_B CDC6 homolog 3, cell di 98.8 2.3E-08 7.9E-13 108.8 11.6 140 185-330 20-174 (384)
151 2qby_A CDC6 homolog 1, cell di 98.7 1.4E-08 4.9E-13 110.4 7.2 142 185-331 20-174 (386)
152 4fdw_A Leucine rich hypothetic 98.6 4.7E-07 1.6E-11 98.7 17.3 234 519-776 112-356 (401)
153 2chg_A Replication factor C sm 98.6 6.3E-08 2.1E-12 96.3 9.2 124 184-330 16-142 (226)
154 1njg_A DNA polymerase III subu 98.6 1.1E-07 3.7E-12 96.0 10.8 139 183-330 21-166 (250)
155 2fna_A Conserved hypothetical 98.6 1E-07 3.5E-12 102.3 9.1 136 185-332 13-182 (357)
156 3un9_A NLR family member X1; l 98.6 1.1E-08 3.7E-13 110.6 1.3 110 519-628 71-194 (372)
157 2ifg_A High affinity nerve gro 98.5 1.5E-07 5E-12 100.9 9.7 91 540-631 24-117 (347)
158 3sb4_A Hypothetical leucine ri 98.5 4E-07 1.4E-11 96.7 12.2 195 540-743 85-327 (329)
159 2ifg_A High affinity nerve gro 98.5 1.5E-07 5.1E-12 100.9 8.6 91 515-610 27-119 (347)
160 1sxj_B Activator 1 37 kDa subu 98.4 3.3E-07 1.1E-11 97.0 7.7 127 181-330 17-147 (323)
161 2ra8_A Uncharacterized protein 98.4 5.3E-07 1.8E-11 96.6 9.0 191 542-776 133-341 (362)
162 1iqp_A RFCS; clamp loader, ext 98.3 8.3E-07 2.8E-11 94.0 6.7 133 175-330 15-150 (327)
163 3te6_A Regulatory protein SIR3 98.2 6.3E-06 2.1E-10 85.8 12.5 112 187-301 22-142 (318)
164 2ra8_A Uncharacterized protein 98.2 6.8E-07 2.3E-11 95.7 3.3 162 587-776 132-318 (362)
165 3un9_A NLR family member X1; l 98.1 1.4E-06 4.7E-11 94.0 5.6 60 570-629 154-223 (372)
166 1jbk_A CLPB protein; beta barr 98.1 3.6E-06 1.2E-10 81.2 7.9 46 184-231 21-66 (195)
167 1io0_A Tropomodulin; LRR prote 98.0 4.3E-06 1.5E-10 80.5 6.1 111 519-629 35-163 (185)
168 1jr3_A DNA polymerase III subu 97.9 3.4E-05 1.2E-09 83.1 11.6 140 183-330 14-159 (373)
169 2chq_A Replication factor C sm 97.9 1.1E-05 3.9E-10 84.8 7.6 124 181-330 13-142 (319)
170 3rw6_A Nuclear RNA export fact 97.8 1.3E-05 4.4E-10 81.4 4.4 83 541-624 163-258 (267)
171 3n70_A Transport activator; si 97.7 2.8E-05 9.7E-10 71.4 5.8 113 186-329 2-115 (145)
172 2p65_A Hypothetical protein PF 97.7 3.8E-05 1.3E-09 73.5 6.4 46 184-231 21-66 (187)
173 3u61_B DNA polymerase accessor 97.7 8.8E-05 3E-09 78.2 9.7 130 174-330 15-146 (324)
174 3e4g_A ATP synthase subunit S, 97.7 1.9E-05 6.3E-10 74.4 3.3 87 664-779 62-153 (176)
175 3ec2_A DNA replication protein 97.6 8.7E-05 3E-09 70.9 7.7 125 184-329 9-142 (180)
176 3h4m_A Proteasome-activating n 97.6 6.3E-05 2.1E-09 77.8 7.1 48 184-231 16-74 (285)
177 1io0_A Tropomodulin; LRR prote 97.6 1.6E-05 5.4E-10 76.6 2.3 118 539-674 27-162 (185)
178 1sxj_D Activator 1 41 kDa subu 97.6 7.3E-05 2.5E-09 79.8 7.5 142 177-329 29-172 (353)
179 4gt6_A Cell surface protein; l 97.6 0.0014 4.8E-08 71.0 17.8 104 659-775 261-367 (394)
180 1sxj_E Activator 1 40 kDa subu 97.6 0.00017 5.8E-09 77.0 9.8 49 180-230 9-58 (354)
181 3rw6_A Nuclear RNA export fact 97.5 1.5E-05 5E-10 81.0 0.1 104 544-648 137-258 (267)
182 4fs7_A Uncharacterized protein 97.5 0.0022 7.4E-08 69.5 17.1 239 515-774 67-352 (394)
183 3syl_A Protein CBBX; photosynt 97.5 0.00015 5.2E-09 75.8 7.6 125 186-330 32-179 (309)
184 2qz4_A Paraplegin; AAA+, SPG7, 97.5 0.00044 1.5E-08 70.2 10.6 47 184-230 5-61 (262)
185 2w58_A DNAI, primosome compone 97.4 0.0002 6.9E-09 69.7 7.1 61 184-246 24-90 (202)
186 2z4s_A Chromosomal replication 97.4 0.00021 7.2E-09 78.6 8.0 123 185-329 105-236 (440)
187 3co5_A Putative two-component 97.4 0.00011 3.7E-09 67.3 4.3 46 186-231 5-50 (143)
188 3uk6_A RUVB-like 2; hexameric 97.3 0.00074 2.5E-08 72.4 11.1 48 184-231 43-93 (368)
189 4fs7_A Uncharacterized protein 97.3 0.00098 3.4E-08 72.3 12.1 229 515-770 158-393 (394)
190 3bos_A Putative DNA replicatio 97.3 0.00013 4.6E-09 72.9 4.8 61 184-248 27-90 (242)
191 3pvs_A Replication-associated 97.3 0.00022 7.6E-09 78.3 6.9 47 182-230 23-72 (447)
192 1hqc_A RUVB; extended AAA-ATPa 97.3 0.00019 6.5E-09 75.6 6.2 48 183-230 10-60 (324)
193 3e4g_A ATP synthase subunit S, 97.3 0.00016 5.4E-09 68.1 4.8 79 549-627 62-149 (176)
194 1sxj_C Activator 1 40 kDa subu 97.3 0.00044 1.5E-08 73.4 8.5 126 175-329 15-149 (340)
195 1d2n_A N-ethylmaleimide-sensit 97.3 0.0009 3.1E-08 68.5 10.1 47 185-231 33-87 (272)
196 3eie_A Vacuolar protein sortin 97.2 0.0007 2.4E-08 71.2 9.3 47 184-230 17-73 (322)
197 1xwi_A SKD1 protein; VPS4B, AA 97.2 0.0024 8.3E-08 67.0 13.2 48 184-231 11-68 (322)
198 3pfi_A Holliday junction ATP-d 97.2 0.00089 3.1E-08 70.9 9.4 48 183-230 27-77 (338)
199 3d8b_A Fidgetin-like protein 1 97.2 0.00074 2.5E-08 72.1 8.5 46 185-230 84-139 (357)
200 3cf0_A Transitional endoplasmi 97.1 0.0014 4.8E-08 68.1 10.2 47 185-231 15-72 (301)
201 3vfd_A Spastin; ATPase, microt 97.1 0.0018 6.1E-08 70.0 10.6 47 184-230 114-170 (389)
202 2gno_A DNA polymerase III, gam 97.1 0.003 1E-07 65.5 11.9 117 190-329 2-121 (305)
203 1l8q_A Chromosomal replication 97.1 0.00076 2.6E-08 71.0 7.4 47 185-231 11-60 (324)
204 4gt6_A Cell surface protein; l 97.1 0.0067 2.3E-07 65.6 15.0 123 637-774 261-387 (394)
205 2zan_A Vacuolar protein sortin 97.0 0.0027 9.3E-08 69.8 11.7 48 184-231 133-190 (444)
206 1lv7_A FTSH; alpha/beta domain 97.0 0.0013 4.5E-08 66.6 8.4 49 183-231 10-68 (257)
207 1a5t_A Delta prime, HOLB; zinc 97.0 0.0038 1.3E-07 65.8 12.3 115 191-330 8-148 (334)
208 3b9p_A CG5977-PA, isoform A; A 96.9 0.0015 5.3E-08 67.6 8.3 47 184-230 20-76 (297)
209 1sxj_A Activator 1 95 kDa subu 96.9 0.00093 3.2E-08 75.1 7.1 57 175-231 29-100 (516)
210 4fcw_A Chaperone protein CLPB; 96.9 0.00067 2.3E-08 70.9 5.4 63 185-249 17-86 (311)
211 2bjv_A PSP operon transcriptio 96.9 0.0007 2.4E-08 69.0 5.2 47 185-231 6-52 (265)
212 2qp9_X Vacuolar protein sortin 96.9 0.0018 6.1E-08 69.0 8.5 48 184-231 50-107 (355)
213 2kjq_A DNAA-related protein; s 96.8 0.00071 2.4E-08 62.2 4.2 24 208-231 36-59 (149)
214 3pxg_A Negative regulator of g 96.8 0.0017 5.7E-08 72.0 7.4 44 185-230 180-223 (468)
215 1ojl_A Transcriptional regulat 96.7 0.0015 5E-08 68.0 5.9 46 186-231 3-48 (304)
216 2ce7_A Cell division protein F 96.6 0.0047 1.6E-07 67.9 9.3 94 184-301 15-118 (476)
217 2r62_A Cell division protease 96.6 0.0015 5E-08 66.6 4.7 47 185-231 11-67 (268)
218 2vhj_A Ntpase P4, P4; non- hyd 96.6 0.0019 6.5E-08 66.5 5.4 68 208-301 123-192 (331)
219 3hu3_A Transitional endoplasmi 96.5 0.0041 1.4E-07 68.9 7.6 46 185-230 204-260 (489)
220 4h09_A Hypothetical leucine ri 96.4 0.076 2.6E-06 56.7 17.5 102 659-773 236-341 (379)
221 1qvr_A CLPB protein; coiled co 96.4 0.0037 1.3E-07 74.8 7.5 45 185-231 170-214 (854)
222 1r6b_X CLPA protein; AAA+, N-t 96.4 0.019 6.4E-07 67.9 13.2 44 185-230 186-229 (758)
223 2cvh_A DNA repair and recombin 96.4 0.01 3.4E-07 58.1 9.2 88 208-301 20-115 (220)
224 4b4t_L 26S protease subunit RP 96.2 0.01 3.5E-07 64.3 8.9 46 185-230 181-237 (437)
225 4b4t_K 26S protease regulatory 96.2 0.0096 3.3E-07 64.4 8.5 46 185-230 172-228 (428)
226 3pxi_A Negative regulator of g 96.2 0.0074 2.5E-07 71.3 8.3 45 185-231 180-224 (758)
227 3lw7_A Adenylate kinase relate 96.1 0.025 8.6E-07 52.8 10.4 20 209-228 2-21 (179)
228 4b4t_M 26S protease regulatory 96.1 0.0076 2.6E-07 65.2 7.2 48 183-230 179-237 (434)
229 4b4t_H 26S protease regulatory 96.1 0.011 3.9E-07 63.9 8.1 46 185-230 209-265 (467)
230 4b4t_J 26S protease regulatory 96.0 0.0081 2.8E-07 64.1 6.8 46 185-230 148-204 (405)
231 3pxi_A Negative regulator of g 96.0 0.0034 1.2E-07 74.1 4.1 46 185-230 491-543 (758)
232 2qgz_A Helicase loader, putati 95.9 0.0054 1.8E-07 63.8 4.7 48 184-231 123-175 (308)
233 3hr8_A Protein RECA; alpha and 95.7 0.021 7.3E-07 60.2 8.2 88 207-301 60-149 (356)
234 1ypw_A Transitional endoplasmi 95.6 0.014 4.8E-07 69.0 7.4 46 185-230 204-260 (806)
235 2x8a_A Nuclear valosin-contain 95.6 0.023 7.9E-07 57.9 8.1 46 185-231 10-67 (274)
236 3cf2_A TER ATPase, transitiona 95.6 0.029 9.8E-07 65.5 9.6 93 185-301 204-307 (806)
237 1qvr_A CLPB protein; coiled co 95.6 0.018 6.1E-07 68.9 8.1 46 185-230 558-610 (854)
238 3t15_A Ribulose bisphosphate c 95.6 0.009 3.1E-07 61.6 4.7 25 207-231 35-59 (293)
239 2pze_A Cystic fibrosis transme 95.5 0.17 5.8E-06 49.8 13.8 23 208-230 34-56 (229)
240 4b4t_I 26S protease regulatory 95.5 0.021 7.3E-07 61.1 7.6 47 184-230 181-238 (437)
241 2cbz_A Multidrug resistance-as 95.5 0.07 2.4E-06 52.9 10.8 23 208-230 31-53 (237)
242 2w0m_A SSO2452; RECA, SSPF, un 95.4 0.034 1.2E-06 54.8 8.1 118 208-330 23-168 (235)
243 1n0w_A DNA repair protein RAD5 95.3 0.054 1.8E-06 53.7 9.5 93 208-301 24-129 (243)
244 1g5t_A COB(I)alamin adenosyltr 95.3 0.029 9.9E-07 53.4 6.9 117 208-330 28-163 (196)
245 1rz3_A Hypothetical protein rb 95.3 0.016 5.4E-07 56.1 5.2 41 190-230 3-44 (201)
246 3c8u_A Fructokinase; YP_612366 95.3 0.011 3.6E-07 57.6 4.0 37 194-230 8-44 (208)
247 2b8t_A Thymidine kinase; deoxy 95.3 0.012 4E-07 57.8 4.2 112 208-329 12-125 (223)
248 1in4_A RUVB, holliday junction 95.2 0.0092 3.1E-07 62.9 3.5 46 185-230 25-73 (334)
249 2z43_A DNA repair and recombin 95.2 0.034 1.2E-06 58.2 7.8 93 208-301 107-213 (324)
250 2zr9_A Protein RECA, recombina 95.2 0.036 1.2E-06 58.5 8.0 88 207-301 60-149 (349)
251 2dhr_A FTSH; AAA+ protein, hex 95.2 0.031 1E-06 61.9 7.6 49 183-231 29-87 (499)
252 2i1q_A DNA repair and recombin 95.1 0.038 1.3E-06 57.8 7.7 94 207-301 97-214 (322)
253 1xp8_A RECA protein, recombina 95.1 0.046 1.6E-06 58.0 8.4 87 208-301 74-162 (366)
254 4h09_A Hypothetical leucine ri 95.1 0.57 2E-05 49.8 17.3 82 659-747 259-343 (379)
255 1sgw_A Putative ABC transporte 95.1 0.058 2E-06 52.5 8.4 23 208-230 35-57 (214)
256 1r6b_X CLPA protein; AAA+, N-t 95.1 0.027 9.3E-07 66.5 7.3 46 185-230 458-510 (758)
257 1ofh_A ATP-dependent HSL prote 95.0 0.011 3.7E-07 61.4 3.2 47 185-231 15-73 (310)
258 1v5w_A DMC1, meiotic recombina 95.0 0.09 3.1E-06 55.4 10.4 94 207-301 121-229 (343)
259 2pjz_A Hypothetical protein ST 94.9 0.14 4.9E-06 51.5 11.2 22 209-230 31-52 (263)
260 1pgv_A TMD-1, tropomodulin TMD 94.9 0.034 1.2E-06 53.1 6.0 108 519-626 40-166 (197)
261 3io5_A Recombination and repai 94.8 0.1 3.4E-06 53.5 9.5 86 209-301 29-121 (333)
262 2px0_A Flagellar biosynthesis 94.7 0.072 2.5E-06 54.8 8.4 86 208-300 105-191 (296)
263 1odf_A YGR205W, hypothetical 3 94.7 0.029 9.9E-07 57.5 5.4 26 205-230 28-53 (290)
264 3jvv_A Twitching mobility prot 94.6 0.031 1.1E-06 59.1 5.6 114 208-336 123-237 (356)
265 3ice_A Transcription terminati 94.6 0.031 1.1E-06 58.8 5.4 52 196-251 163-217 (422)
266 1qhx_A CPT, protein (chloramph 94.6 0.016 5.6E-07 54.5 2.9 22 209-230 4-25 (178)
267 3rfe_A Platelet glycoprotein I 94.5 0.06 2E-06 47.8 6.5 54 551-606 11-67 (130)
268 3dm5_A SRP54, signal recogniti 94.5 0.64 2.2E-05 50.2 15.7 24 207-230 99-122 (443)
269 3kb2_A SPBC2 prophage-derived 94.5 0.017 5.8E-07 54.0 3.0 22 209-230 2-23 (173)
270 1fx0_B ATP synthase beta chain 94.5 0.073 2.5E-06 57.9 8.2 104 196-301 154-276 (498)
271 3m6a_A ATP-dependent protease 94.5 0.033 1.1E-06 62.7 5.7 46 185-230 81-130 (543)
272 3hws_A ATP-dependent CLP prote 94.5 0.025 8.4E-07 60.3 4.4 45 186-230 16-73 (363)
273 1zp6_A Hypothetical protein AT 94.5 0.02 6.7E-07 54.7 3.3 23 208-230 9-31 (191)
274 3nbx_X ATPase RAVA; AAA+ ATPas 94.4 0.061 2.1E-06 59.5 7.6 42 186-231 23-64 (500)
275 2ck3_D ATP synthase subunit be 94.4 0.068 2.3E-06 57.9 7.6 65 196-262 142-207 (482)
276 3vaa_A Shikimate kinase, SK; s 94.4 0.02 6.9E-07 55.2 3.2 23 208-230 25-47 (199)
277 3rfe_A Platelet glycoprotein I 94.3 0.052 1.8E-06 48.2 5.6 55 574-630 11-68 (130)
278 2c9o_A RUVB-like 1; hexameric 94.3 0.036 1.2E-06 61.0 5.5 47 185-231 37-86 (456)
279 1vma_A Cell division protein F 94.3 0.078 2.7E-06 54.7 7.5 91 207-301 103-196 (306)
280 1ly1_A Polynucleotide kinase; 94.2 0.024 8.1E-07 53.4 3.4 22 209-230 3-24 (181)
281 1pzn_A RAD51, DNA repair and r 94.2 0.11 3.6E-06 55.0 8.7 94 207-301 130-241 (349)
282 1sky_E F1-ATPase, F1-ATP synth 94.2 0.047 1.6E-06 59.3 6.0 62 197-261 141-204 (473)
283 1kgd_A CASK, peripheral plasma 94.2 0.023 8E-07 53.7 3.2 23 208-230 5-27 (180)
284 1ixz_A ATP-dependent metallopr 94.2 0.03 1E-06 56.2 4.2 47 185-231 16-72 (254)
285 3e70_C DPA, signal recognition 94.2 0.12 4.1E-06 53.8 8.8 24 207-230 128-151 (328)
286 1u94_A RECA protein, recombina 94.2 0.074 2.5E-06 56.2 7.2 88 207-301 62-151 (356)
287 1kag_A SKI, shikimate kinase I 94.1 0.019 6.6E-07 53.7 2.4 22 209-230 5-26 (173)
288 2bbs_A Cystic fibrosis transme 94.1 0.43 1.5E-05 48.7 12.5 23 208-230 64-86 (290)
289 2r44_A Uncharacterized protein 94.0 0.033 1.1E-06 58.4 4.1 42 185-230 27-68 (331)
290 2ga8_A Hypothetical 39.9 kDa p 93.9 0.046 1.6E-06 57.1 5.0 44 187-230 1-46 (359)
291 1knq_A Gluconate kinase; ALFA/ 93.9 0.038 1.3E-06 51.9 4.0 23 208-230 8-30 (175)
292 3kl4_A SRP54, signal recogniti 93.9 0.15 5.1E-06 55.1 9.1 24 207-230 96-119 (433)
293 3uie_A Adenylyl-sulfate kinase 93.9 0.034 1.2E-06 53.5 3.8 24 207-230 24-47 (200)
294 3trf_A Shikimate kinase, SK; a 93.9 0.027 9.2E-07 53.4 3.0 23 208-230 5-27 (185)
295 3tqc_A Pantothenate kinase; bi 93.8 0.21 7E-06 51.8 9.7 98 188-291 70-171 (321)
296 4gp7_A Metallophosphoesterase; 93.7 0.032 1.1E-06 52.3 3.1 23 208-230 9-31 (171)
297 3tr0_A Guanylate kinase, GMP k 93.7 0.033 1.1E-06 53.7 3.3 23 208-230 7-29 (205)
298 2bdt_A BH3686; alpha-beta prot 93.7 0.036 1.2E-06 52.7 3.5 22 209-230 3-24 (189)
299 1ex7_A Guanylate kinase; subst 93.7 0.028 9.6E-07 53.4 2.6 22 209-230 2-23 (186)
300 4eun_A Thermoresistant glucoki 93.7 0.031 1.1E-06 53.8 3.0 23 208-230 29-51 (200)
301 3lda_A DNA repair protein RAD5 93.7 0.2 6.9E-06 53.7 9.6 93 208-301 178-283 (400)
302 1nks_A Adenylate kinase; therm 93.6 0.034 1.2E-06 53.0 3.2 22 209-230 2-23 (194)
303 3t61_A Gluconokinase; PSI-biol 93.6 0.026 8.8E-07 54.5 2.3 23 208-230 18-40 (202)
304 3zvl_A Bifunctional polynucleo 93.5 0.16 5.3E-06 55.1 8.5 25 207-231 257-281 (416)
305 2rhm_A Putative kinase; P-loop 93.5 0.041 1.4E-06 52.5 3.4 23 208-230 5-27 (193)
306 1zuh_A Shikimate kinase; alpha 93.5 0.037 1.3E-06 51.5 3.0 23 208-230 7-29 (168)
307 2qt1_A Nicotinamide riboside k 93.5 0.044 1.5E-06 53.1 3.6 24 207-230 20-43 (207)
308 2jaq_A Deoxyguanosine kinase; 93.4 0.037 1.3E-06 53.2 3.1 21 210-230 2-22 (205)
309 3a00_A Guanylate kinase, GMP k 93.4 0.032 1.1E-06 53.1 2.5 22 209-230 2-23 (186)
310 1kht_A Adenylate kinase; phosp 93.4 0.038 1.3E-06 52.5 3.1 22 209-230 4-25 (192)
311 3asz_A Uridine kinase; cytidin 93.4 0.043 1.5E-06 53.3 3.4 24 207-230 5-28 (211)
312 1ye8_A Protein THEP1, hypothet 93.4 0.042 1.4E-06 51.8 3.3 22 210-231 2-23 (178)
313 1jjv_A Dephospho-COA kinase; P 93.4 0.044 1.5E-06 53.0 3.5 22 209-230 3-24 (206)
314 1iy2_A ATP-dependent metallopr 93.3 0.043 1.5E-06 56.0 3.5 47 185-231 40-96 (278)
315 2if2_A Dephospho-COA kinase; a 93.3 0.037 1.3E-06 53.4 2.9 22 209-230 2-23 (204)
316 3iij_A Coilin-interacting nucl 93.3 0.034 1.2E-06 52.4 2.6 23 208-230 11-33 (180)
317 2ze6_A Isopentenyl transferase 93.3 0.042 1.4E-06 55.2 3.4 22 209-230 2-23 (253)
318 3tau_A Guanylate kinase, GMP k 93.3 0.044 1.5E-06 53.2 3.4 23 208-230 8-30 (208)
319 1um8_A ATP-dependent CLP prote 93.3 0.056 1.9E-06 57.8 4.5 46 185-230 21-94 (376)
320 1cke_A CK, MSSA, protein (cyti 93.3 0.041 1.4E-06 54.1 3.1 22 209-230 6-27 (227)
321 1uf9_A TT1252 protein; P-loop, 93.3 0.046 1.6E-06 52.5 3.5 24 207-230 7-30 (203)
322 1g8p_A Magnesium-chelatase 38 93.3 0.034 1.2E-06 58.7 2.7 46 184-231 23-68 (350)
323 2j41_A Guanylate kinase; GMP, 93.2 0.041 1.4E-06 53.1 3.1 23 208-230 6-28 (207)
324 1tev_A UMP-CMP kinase; ploop, 93.2 0.048 1.6E-06 52.0 3.4 23 208-230 3-25 (196)
325 1uj2_A Uridine-cytidine kinase 93.2 0.048 1.6E-06 54.7 3.5 24 207-230 21-44 (252)
326 2qor_A Guanylate kinase; phosp 93.2 0.037 1.3E-06 53.5 2.6 24 207-230 11-34 (204)
327 1via_A Shikimate kinase; struc 93.2 0.036 1.2E-06 52.0 2.4 22 209-230 5-26 (175)
328 1ukz_A Uridylate kinase; trans 93.2 0.052 1.8E-06 52.3 3.6 24 207-230 14-37 (203)
329 1y63_A LMAJ004144AAA protein; 93.1 0.047 1.6E-06 51.8 3.3 23 208-230 10-32 (184)
330 1gvn_B Zeta; postsegregational 93.1 0.074 2.5E-06 54.5 4.9 38 193-230 15-55 (287)
331 2hf9_A Probable hydrogenase ni 93.1 0.072 2.4E-06 52.2 4.6 36 194-231 26-61 (226)
332 3bh0_A DNAB-like replicative h 93.1 0.37 1.3E-05 49.9 10.3 53 207-263 67-119 (315)
333 1lvg_A Guanylate kinase, GMP k 93.0 0.04 1.4E-06 53.1 2.6 23 208-230 4-26 (198)
334 2yhs_A FTSY, cell division pro 93.0 0.37 1.3E-05 52.6 10.4 24 207-230 292-315 (503)
335 2yvu_A Probable adenylyl-sulfa 93.0 0.052 1.8E-06 51.5 3.4 25 207-231 12-36 (186)
336 2c95_A Adenylate kinase 1; tra 93.0 0.048 1.6E-06 52.1 3.1 23 208-230 9-31 (196)
337 3cm0_A Adenylate kinase; ATP-b 93.0 0.052 1.8E-06 51.4 3.3 23 208-230 4-26 (186)
338 3a4m_A L-seryl-tRNA(SEC) kinas 93.0 0.054 1.8E-06 54.6 3.6 23 208-230 4-26 (260)
339 3fwy_A Light-independent proto 93.0 0.055 1.9E-06 56.2 3.7 24 207-230 47-70 (314)
340 3tlx_A Adenylate kinase 2; str 92.9 0.071 2.4E-06 53.1 4.3 24 207-230 28-51 (243)
341 2p5t_B PEZT; postsegregational 92.9 0.068 2.3E-06 53.7 4.2 39 192-230 13-54 (253)
342 2xxa_A Signal recognition part 92.9 0.43 1.5E-05 51.7 10.8 37 194-230 79-122 (433)
343 2iyv_A Shikimate kinase, SK; t 92.9 0.037 1.3E-06 52.4 2.1 22 209-230 3-24 (184)
344 1xjc_A MOBB protein homolog; s 92.9 0.053 1.8E-06 50.5 3.1 24 207-230 3-26 (169)
345 2bbw_A Adenylate kinase 4, AK4 92.8 0.054 1.9E-06 54.1 3.3 23 208-230 27-49 (246)
346 1j8m_F SRP54, signal recogniti 92.8 0.35 1.2E-05 49.6 9.4 91 208-301 98-190 (297)
347 1e6c_A Shikimate kinase; phosp 92.8 0.044 1.5E-06 51.1 2.4 22 209-230 3-24 (173)
348 3aez_A Pantothenate kinase; tr 92.8 0.065 2.2E-06 55.6 3.9 24 207-230 89-112 (312)
349 2grj_A Dephospho-COA kinase; T 92.8 0.059 2E-06 51.5 3.3 24 207-230 11-34 (192)
350 1htw_A HI0065; nucleotide-bind 92.7 0.065 2.2E-06 49.4 3.5 23 208-230 33-55 (158)
351 2plr_A DTMP kinase, probable t 92.7 0.058 2E-06 52.2 3.4 24 208-231 4-27 (213)
352 1znw_A Guanylate kinase, GMP k 92.7 0.055 1.9E-06 52.4 3.1 23 208-230 20-42 (207)
353 2bwj_A Adenylate kinase 5; pho 92.7 0.05 1.7E-06 52.1 2.8 23 208-230 12-34 (199)
354 2pt5_A Shikimate kinase, SK; a 92.7 0.058 2E-06 50.0 3.1 21 210-230 2-22 (168)
355 2wsm_A Hydrogenase expression/ 92.7 0.073 2.5E-06 51.9 3.9 41 189-231 13-53 (221)
356 2ewv_A Twitching motility prot 92.6 0.13 4.4E-06 54.8 6.1 111 208-335 136-249 (372)
357 1qf9_A UMP/CMP kinase, protein 92.6 0.058 2E-06 51.3 3.1 23 208-230 6-28 (194)
358 2dr3_A UPF0273 protein PH0284; 92.6 0.35 1.2E-05 47.8 9.0 39 208-248 23-61 (247)
359 3p32_A Probable GTPase RV1496/ 92.5 0.11 3.7E-06 55.1 5.3 37 194-230 65-101 (355)
360 2vli_A Antibiotic resistance p 92.5 0.046 1.6E-06 51.6 2.2 23 208-230 5-27 (183)
361 2ffh_A Protein (FFH); SRP54, s 92.5 0.31 1E-05 52.6 8.9 23 208-230 98-120 (425)
362 2pbr_A DTMP kinase, thymidylat 92.5 0.061 2.1E-06 51.2 3.1 21 210-230 2-22 (195)
363 2jeo_A Uridine-cytidine kinase 92.5 0.075 2.5E-06 53.0 3.8 24 207-230 24-47 (245)
364 2cdn_A Adenylate kinase; phosp 92.5 0.062 2.1E-06 51.7 3.1 23 208-230 20-42 (201)
365 3ney_A 55 kDa erythrocyte memb 92.5 0.062 2.1E-06 51.4 3.0 24 207-230 18-41 (197)
366 4e22_A Cytidylate kinase; P-lo 92.5 0.063 2.2E-06 53.8 3.3 23 208-230 27-49 (252)
367 2q6t_A DNAB replication FORK h 92.4 2 6.9E-05 46.7 15.5 54 207-263 199-252 (444)
368 1z6g_A Guanylate kinase; struc 92.3 0.055 1.9E-06 53.0 2.5 23 208-230 23-45 (218)
369 3vr4_D V-type sodium ATPase su 92.3 0.067 2.3E-06 57.6 3.3 105 196-301 140-258 (465)
370 3umf_A Adenylate kinase; rossm 92.2 0.082 2.8E-06 51.5 3.6 26 206-231 27-52 (217)
371 4a74_A DNA repair and recombin 92.1 0.18 6E-06 49.4 6.1 44 208-251 25-72 (231)
372 3l0o_A Transcription terminati 92.1 0.19 6.4E-06 52.9 6.3 54 195-250 163-217 (427)
373 1pgv_A TMD-1, tropomodulin TMD 92.1 0.13 4.5E-06 49.1 4.8 88 540-627 33-136 (197)
374 2f1r_A Molybdopterin-guanine d 92.1 0.052 1.8E-06 50.8 1.9 23 208-230 2-24 (171)
375 1g41_A Heat shock protein HSLU 92.0 0.11 3.9E-06 56.2 4.7 46 185-230 15-72 (444)
376 2pez_A Bifunctional 3'-phospho 92.0 0.085 2.9E-06 49.6 3.4 23 208-230 5-27 (179)
377 2z0h_A DTMP kinase, thymidylat 91.9 0.078 2.7E-06 50.6 3.1 21 210-230 2-22 (197)
378 1nn5_A Similar to deoxythymidy 91.9 0.08 2.7E-06 51.4 3.1 23 208-230 9-31 (215)
379 2pt7_A CAG-ALFA; ATPase, prote 91.9 0.33 1.1E-05 50.6 8.0 109 209-335 172-280 (330)
380 1vht_A Dephospho-COA kinase; s 91.9 0.097 3.3E-06 51.0 3.7 23 208-230 4-26 (218)
381 2wwf_A Thymidilate kinase, put 91.8 0.072 2.5E-06 51.6 2.7 23 208-230 10-32 (212)
382 1s96_A Guanylate kinase, GMP k 91.8 0.083 2.8E-06 51.7 3.1 24 208-231 16-39 (219)
383 2f6r_A COA synthase, bifunctio 91.8 0.091 3.1E-06 53.6 3.6 24 207-230 74-97 (281)
384 1zd8_A GTP:AMP phosphotransfer 91.8 0.075 2.6E-06 52.3 2.9 23 208-230 7-29 (227)
385 1aky_A Adenylate kinase; ATP:A 91.8 0.085 2.9E-06 51.5 3.2 23 208-230 4-26 (220)
386 1zu4_A FTSY; GTPase, signal re 91.8 0.17 5.8E-06 52.6 5.6 24 207-230 104-127 (320)
387 2i3b_A HCR-ntpase, human cance 91.8 0.077 2.6E-06 50.6 2.7 22 210-231 3-24 (189)
388 1gtv_A TMK, thymidylate kinase 91.7 0.043 1.5E-06 53.3 1.0 21 210-230 2-22 (214)
389 3fb4_A Adenylate kinase; psych 91.7 0.084 2.9E-06 51.4 3.1 21 210-230 2-22 (216)
390 2v54_A DTMP kinase, thymidylat 91.7 0.083 2.8E-06 50.8 3.0 23 208-230 4-26 (204)
391 1m7g_A Adenylylsulfate kinase; 91.6 0.094 3.2E-06 50.9 3.3 23 208-230 25-47 (211)
392 3tif_A Uncharacterized ABC tra 91.6 0.14 4.7E-06 50.7 4.5 23 208-230 31-53 (235)
393 1rj9_A FTSY, signal recognitio 91.5 0.1 3.5E-06 53.8 3.6 24 207-230 101-124 (304)
394 3nwj_A ATSK2; P loop, shikimat 91.5 0.072 2.5E-06 53.2 2.4 23 208-230 48-70 (250)
395 2onk_A Molybdate/tungstate ABC 91.5 0.097 3.3E-06 52.0 3.3 22 209-230 25-46 (240)
396 2ehv_A Hypothetical protein PH 91.5 0.095 3.3E-06 52.1 3.3 23 208-230 30-52 (251)
397 3dl0_A Adenylate kinase; phosp 91.5 0.092 3.2E-06 51.1 3.1 21 210-230 2-22 (216)
398 3lnc_A Guanylate kinase, GMP k 91.5 0.065 2.2E-06 52.9 1.9 23 208-230 27-50 (231)
399 2r9v_A ATP synthase subunit al 91.4 0.18 6.3E-06 54.9 5.5 101 196-301 164-277 (515)
400 2j37_W Signal recognition part 91.4 0.65 2.2E-05 51.2 10.0 24 207-230 100-123 (504)
401 3gfo_A Cobalt import ATP-bindi 91.3 0.15 5.2E-06 51.6 4.6 23 208-230 34-56 (275)
402 1zak_A Adenylate kinase; ATP:A 91.3 0.082 2.8E-06 51.7 2.5 23 208-230 5-27 (222)
403 1fx0_A ATP synthase alpha chai 91.3 0.2 6.7E-06 54.7 5.6 87 209-301 164-265 (507)
404 1np6_A Molybdopterin-guanine d 91.2 0.11 3.7E-06 48.8 3.1 23 208-230 6-28 (174)
405 1b0u_A Histidine permease; ABC 91.2 0.16 5.5E-06 51.1 4.6 23 208-230 32-54 (262)
406 3b9q_A Chloroplast SRP recepto 91.2 0.12 4.2E-06 53.2 3.8 23 208-230 100-122 (302)
407 1sq5_A Pantothenate kinase; P- 91.2 0.12 4E-06 53.6 3.6 24 207-230 79-102 (308)
408 3ake_A Cytidylate kinase; CMP 91.2 0.1 3.6E-06 50.2 3.1 21 210-230 4-24 (208)
409 2pcj_A ABC transporter, lipopr 91.2 0.097 3.3E-06 51.4 2.8 23 208-230 30-52 (224)
410 1q57_A DNA primase/helicase; d 91.1 0.89 3E-05 50.5 11.0 54 207-263 241-294 (503)
411 3d3q_A TRNA delta(2)-isopenten 91.1 0.11 3.8E-06 54.1 3.3 22 209-230 8-29 (340)
412 3a8t_A Adenylate isopentenyltr 91.1 0.12 4.1E-06 53.7 3.5 23 208-230 40-62 (339)
413 3b85_A Phosphate starvation-in 90.9 0.094 3.2E-06 50.8 2.4 22 209-230 23-44 (208)
414 2wji_A Ferrous iron transport 90.9 0.16 5.6E-06 46.8 4.1 23 209-231 4-26 (165)
415 2qe7_A ATP synthase subunit al 90.7 0.28 9.6E-06 53.4 6.1 101 196-301 151-264 (502)
416 4a1f_A DNAB helicase, replicat 90.7 0.53 1.8E-05 49.1 8.0 52 208-263 46-97 (338)
417 3r20_A Cytidylate kinase; stru 90.7 0.13 4.3E-06 50.7 3.1 23 208-230 9-31 (233)
418 3mfy_A V-type ATP synthase alp 90.7 0.31 1.1E-05 53.5 6.4 59 196-259 216-275 (588)
419 2c61_A A-type ATP synthase non 90.6 0.14 4.7E-06 55.5 3.6 104 196-300 141-258 (469)
420 1ji0_A ABC transporter; ATP bi 90.6 0.12 4.2E-06 51.2 3.0 23 208-230 32-54 (240)
421 1vpl_A ABC transporter, ATP-bi 90.6 0.2 6.8E-06 50.2 4.6 23 208-230 41-63 (256)
422 2ff7_A Alpha-hemolysin translo 90.6 0.2 6.8E-06 50.0 4.5 23 208-230 35-57 (247)
423 3b5x_A Lipid A export ATP-bind 90.5 1.2 4.2E-05 50.3 11.7 23 208-230 369-391 (582)
424 4g1u_C Hemin import ATP-bindin 90.5 0.13 4.3E-06 52.0 3.1 23 208-230 37-59 (266)
425 1mv5_A LMRA, multidrug resista 90.5 0.14 4.7E-06 51.0 3.3 23 208-230 28-50 (243)
426 2d2e_A SUFC protein; ABC-ATPas 90.5 0.13 4.6E-06 51.3 3.2 23 208-230 29-51 (250)
427 2olj_A Amino acid ABC transpor 90.5 0.13 4.4E-06 51.9 3.1 23 208-230 50-72 (263)
428 1g6h_A High-affinity branched- 90.5 0.13 4.3E-06 51.8 3.0 23 208-230 33-55 (257)
429 2xb4_A Adenylate kinase; ATP-b 90.5 0.13 4.5E-06 50.3 3.1 21 210-230 2-22 (223)
430 1tue_A Replication protein E1; 90.5 0.21 7.2E-06 47.7 4.3 37 194-231 45-81 (212)
431 1svm_A Large T antigen; AAA+ f 90.4 0.22 7.4E-06 52.9 4.9 36 195-230 156-191 (377)
432 2zu0_C Probable ATP-dependent 90.4 0.14 4.9E-06 51.7 3.3 23 208-230 46-68 (267)
433 3be4_A Adenylate kinase; malar 90.4 0.13 4.4E-06 50.1 2.9 22 209-230 6-27 (217)
434 2ixe_A Antigen peptide transpo 90.3 0.21 7.2E-06 50.5 4.5 23 208-230 45-67 (271)
435 1e4v_A Adenylate kinase; trans 90.3 0.13 4.5E-06 50.0 2.9 21 210-230 2-22 (214)
436 3crm_A TRNA delta(2)-isopenten 90.2 0.15 5.2E-06 52.7 3.3 22 209-230 6-27 (323)
437 3gqb_B V-type ATP synthase bet 90.2 0.13 4.5E-06 55.3 3.0 93 209-301 148-261 (464)
438 3oaa_A ATP synthase subunit al 90.2 0.34 1.2E-05 52.6 6.1 101 196-301 151-264 (513)
439 1oix_A RAS-related protein RAB 90.1 0.14 4.8E-06 48.6 2.9 24 208-231 29-52 (191)
440 2og2_A Putative signal recogni 90.1 0.17 5.9E-06 53.3 3.8 23 208-230 157-179 (359)
441 3ozx_A RNAse L inhibitor; ATP 90.1 1.2 4E-05 49.8 10.8 127 209-337 26-204 (538)
442 1ak2_A Adenylate kinase isoenz 90.1 0.16 5.5E-06 50.1 3.4 23 208-230 16-38 (233)
443 2yz2_A Putative ABC transporte 90.1 0.23 7.8E-06 50.1 4.5 23 208-230 33-55 (266)
444 4eaq_A DTMP kinase, thymidylat 90.1 0.24 8.1E-06 48.8 4.5 25 207-231 25-49 (229)
445 1yrb_A ATP(GTP)binding protein 90.0 0.18 6E-06 50.6 3.7 24 207-230 13-36 (262)
446 2qi9_C Vitamin B12 import ATP- 90.0 0.15 5.1E-06 50.9 3.1 23 208-230 26-48 (249)
447 3k1j_A LON protease, ATP-depen 90.0 0.3 1E-05 55.7 6.0 42 185-230 41-82 (604)
448 2zej_A Dardarin, leucine-rich 90.0 0.15 5.1E-06 48.1 2.9 22 210-231 4-25 (184)
449 2ghi_A Transport protein; mult 90.0 0.15 5.1E-06 51.3 3.0 23 208-230 46-68 (260)
450 3exa_A TRNA delta(2)-isopenten 89.9 0.17 5.7E-06 51.9 3.3 23 208-230 3-25 (322)
451 2dyk_A GTP-binding protein; GT 89.9 0.19 6.4E-06 45.8 3.4 23 209-231 2-24 (161)
452 3sr0_A Adenylate kinase; phosp 89.9 0.16 5.5E-06 49.0 3.1 88 210-311 2-94 (206)
453 3cmu_A Protein RECA, recombina 89.8 0.47 1.6E-05 60.5 7.9 87 207-300 1426-1514(2050)
454 2nq2_C Hypothetical ABC transp 89.8 0.16 5.4E-06 50.9 3.1 24 208-231 31-54 (253)
455 2ihy_A ABC transporter, ATP-bi 89.8 0.16 5.3E-06 51.7 3.1 23 208-230 47-69 (279)
456 1ltq_A Polynucleotide kinase; 89.8 0.17 5.8E-06 52.1 3.4 22 209-230 3-24 (301)
457 2eyu_A Twitching motility prot 89.7 0.18 6.2E-06 50.7 3.4 113 208-335 25-138 (261)
458 3upu_A ATP-dependent DNA helic 89.5 0.38 1.3E-05 52.8 6.1 39 190-231 30-68 (459)
459 2lkc_A Translation initiation 89.5 0.28 9.7E-06 45.5 4.5 25 207-231 7-31 (178)
460 1q3t_A Cytidylate kinase; nucl 89.5 0.19 6.4E-06 49.7 3.3 24 207-230 15-38 (236)
461 2f9l_A RAB11B, member RAS onco 89.5 0.18 6.2E-06 48.2 3.1 24 208-231 5-28 (199)
462 2v9p_A Replication protein E1; 89.3 0.19 6.5E-06 51.6 3.2 24 207-230 125-148 (305)
463 1tq4_A IIGP1, interferon-induc 89.3 0.17 5.8E-06 54.4 3.0 36 195-230 56-91 (413)
464 2vp4_A Deoxynucleoside kinase; 89.3 0.17 5.8E-06 49.8 2.8 24 207-230 19-42 (230)
465 1a7j_A Phosphoribulokinase; tr 89.2 0.11 3.6E-06 53.3 1.3 23 208-230 5-27 (290)
466 2f7s_A C25KG, RAS-related prot 89.2 1.4 4.8E-05 42.3 9.5 24 208-231 25-48 (217)
467 3foz_A TRNA delta(2)-isopenten 89.1 0.21 7.2E-06 51.1 3.3 23 208-230 10-32 (316)
468 3cf2_A TER ATPase, transitiona 89.1 0.31 1.1E-05 56.8 5.2 93 185-301 477-580 (806)
469 2r6a_A DNAB helicase, replicat 89.0 0.99 3.4E-05 49.4 9.0 51 207-260 202-252 (454)
470 2qm8_A GTPase/ATPase; G protei 89.0 0.35 1.2E-05 50.6 5.2 35 196-230 43-77 (337)
471 2wjg_A FEOB, ferrous iron tran 89.0 0.24 8.3E-06 46.5 3.6 24 208-231 7-30 (188)
472 1fzq_A ADP-ribosylation factor 89.0 0.23 8E-06 46.5 3.5 26 206-231 14-39 (181)
473 2ck3_A ATP synthase subunit al 88.9 0.42 1.4E-05 52.1 5.8 105 196-301 151-272 (510)
474 1ls1_A Signal recognition part 88.9 0.24 8.2E-06 50.8 3.7 23 208-230 98-120 (295)
475 2iw3_A Elongation factor 3A; a 88.9 1.7 5.7E-05 51.8 11.2 124 208-335 461-610 (986)
476 3nh6_A ATP-binding cassette SU 88.9 0.17 5.9E-06 52.1 2.6 23 208-230 80-102 (306)
477 1z08_A RAS-related protein RAB 88.9 0.26 9E-06 45.2 3.7 24 208-231 6-29 (170)
478 3sop_A Neuronal-specific septi 88.8 0.2 6.9E-06 50.6 3.0 21 210-230 4-24 (270)
479 1nlf_A Regulatory protein REPA 88.7 0.19 6.5E-06 51.1 2.8 23 208-230 30-52 (279)
480 2ce2_X GTPase HRAS; signaling 88.7 0.24 8.2E-06 45.1 3.2 22 210-231 5-26 (166)
481 3bgw_A DNAB-like replicative h 88.6 1.2 4.2E-05 48.3 9.3 52 207-262 196-247 (444)
482 2p67_A LAO/AO transport system 88.6 0.38 1.3E-05 50.5 5.1 35 196-230 44-78 (341)
483 2nzj_A GTP-binding protein REM 88.5 0.23 8E-06 45.9 3.1 24 208-231 4-27 (175)
484 1z2a_A RAS-related protein RAB 88.5 0.22 7.6E-06 45.6 2.8 24 208-231 5-28 (168)
485 2v3c_C SRP54, signal recogniti 88.4 0.24 8.3E-06 53.7 3.5 23 208-230 99-121 (432)
486 1cr0_A DNA primase/helicase; R 88.4 0.22 7.5E-06 51.1 3.0 51 208-262 35-86 (296)
487 2erx_A GTP-binding protein DI- 88.3 0.32 1.1E-05 44.6 3.9 23 209-231 4-26 (172)
488 4edh_A DTMP kinase, thymidylat 88.3 0.55 1.9E-05 45.5 5.7 24 208-231 6-29 (213)
489 3con_A GTPase NRAS; structural 88.2 0.23 7.9E-06 46.8 2.8 23 209-231 22-44 (190)
490 1u8z_A RAS-related protein RAL 88.2 0.29 9.9E-06 44.7 3.5 24 208-231 4-27 (168)
491 3end_A Light-independent proto 88.2 0.28 9.5E-06 50.6 3.7 25 206-230 39-63 (307)
492 2ocp_A DGK, deoxyguanosine kin 88.1 0.27 9.1E-06 48.7 3.4 24 208-231 2-25 (241)
493 1c1y_A RAS-related protein RAP 88.1 0.3 1E-05 44.7 3.5 23 209-231 4-26 (167)
494 1nij_A Hypothetical protein YJ 88.0 0.22 7.5E-06 51.8 2.7 25 207-231 3-27 (318)
495 3qf4_A ABC transporter, ATP-bi 88.0 1.1 3.9E-05 50.7 8.8 23 208-230 369-391 (587)
496 2gj8_A MNME, tRNA modification 87.9 0.25 8.6E-06 45.9 2.8 23 209-231 5-27 (172)
497 3tui_C Methionine import ATP-b 87.8 0.27 9.2E-06 51.8 3.3 23 208-230 54-76 (366)
498 2afh_E Nitrogenase iron protei 87.7 0.29 1E-05 49.9 3.5 23 208-230 2-24 (289)
499 1kao_A RAP2A; GTP-binding prot 87.7 0.33 1.1E-05 44.2 3.5 23 209-231 4-26 (167)
500 2ged_A SR-beta, signal recogni 87.7 0.31 1.1E-05 46.0 3.4 25 207-231 47-71 (193)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=100.00 E-value=1.2e-41 Score=390.27 Aligned_cols=276 Identities=17% Similarity=0.222 Sum_probs=216.6
Q ss_pred ccchhcHHHHHHHHhcC-CCCcEEEEEEcCCCChHHHHHHHHHc--ccCcccccceeEEEEeCCCC--ChHHHHHHHHHH
Q 003890 188 SEFERGREELFDLLIEG-PSGLSVVAILNGSGFDKTAFAADTYN--NNHIKFYFDCLAWVRVSIAY--DSGKILDDIIKS 262 (788)
Q Consensus 188 vGr~~~~~~i~~~L~~~-~~~~~vi~I~G~gGiGKTtLa~~v~~--~~~~~~~F~~~~wv~vs~~~--~~~~~~~~il~~ 262 (788)
|||+.++++|.++|..+ +...++|+|+||||+||||||+++|+ |.+++.+|+.++||++++.+ ++..+++.|+.+
T Consensus 131 ~GR~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~~~il~~ 210 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDILLM 210 (549)
T ss_dssp CCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHHHHHHHHHHH
Confidence 59999999999999765 34589999999999999999999998 67999999999999999985 899999999999
Q ss_pred cCCCCC---CcccccCCHHHHHHHHHHHhcCC-cEEEEEeCCCCChhhHHHHhhhcCCCCCCcEEEEecCChHHHhhccc
Q 003890 263 VMPPSR---VSVIIGEDYKLKKTILRDYLTNK-KYFIVLDDVFNDSDIWDDLEQVLPDNQNGSRVLITVTDLDLLESLEM 338 (788)
Q Consensus 263 l~~~~~---~~~~~~~~~~~~~~~l~~~l~~k-r~LlVLDdvw~~~~~~~~l~~~l~~~~~gskIivTTR~~~v~~~~~~ 338 (788)
++.... .......+.+.+...+++.|+++ |+|||||||| +.+++ .+.. .+||+||||||++.|+..++.
T Consensus 211 l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~-~~~~~-~~~~-----~~gs~ilvTTR~~~v~~~~~~ 283 (549)
T 2a5y_B 211 LKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVV-QEETI-RWAQ-----ELRLRCLVTTRDVEISNAASQ 283 (549)
T ss_dssp HTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEEC-CHHHH-HHHH-----HTTCEEEEEESBGGGGGGCCS
T ss_pred HhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCC-Cchhh-cccc-----cCCCEEEEEcCCHHHHHHcCC
Confidence 986532 11123345677899999999996 9999999999 76654 1111 169999999999999987752
Q ss_pred c-CCCccch---------------------------------------HHHHHHHHhhccCchhHHHHHHHcCCCCccCC
Q 003890 339 E-NGEKIRP---------------------------------------DSVLIGGQMIRLKHESWQFFILHYGSMPLENY 378 (788)
Q Consensus 339 ~-~~~~~~~---------------------------------------ai~~ig~~L~~~~~~~W~~~l~~~~~~~~~~~ 378 (788)
. ..+.+++ |++++|+.|+.+ .|+.+ +.+... +...
T Consensus 284 ~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~---~w~~~-~~l~~~-l~~~ 358 (549)
T 2a5y_B 284 TCEFIEVTSLEIDECYDFLEAYGMPMPVGEKEEDVLNKTIELSSGNPATLMMFFKSCEPK---TFEKM-AQLNNK-LESR 358 (549)
T ss_dssp CEEEEECCCCCHHHHHHHHHHTSCCCC--CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSS---SHHHH-HHHHHH-HHHH
T ss_pred CCeEEECCCCCHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhCCChHHHHHHHHHhccc---hHHHH-HHhHHH-hhcc
Confidence 2 1122211 999999999766 24433 222221 1111
Q ss_pred ccCCChHHHHHhhhccCCCChhhHHHhh-----------hhhccCCCceechhHHHHHHHHh--CCCCC-----CHHHHH
Q 003890 379 VQGEAIPTIWRQIYAVMELPFHLKVCCI-----------YLCVFRPSIEISTRQLYQLWVAE--GFIPY-----NSEETA 440 (788)
Q Consensus 379 ~~~~~i~~~l~~~~sy~~L~~~lk~cfl-----------~~~~Fp~~~~i~~~~Li~~W~a~--g~i~~-----~~~~~~ 440 (788)
...++.+++. +||++||+++|.||+ |||+||+++.|+ +++|+|+ ||+.. ..++++
T Consensus 359 -~~~~i~~~l~--~Sy~~L~~~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~----i~~w~a~~~G~i~~~~~~~~~~~~~ 431 (549)
T 2a5y_B 359 -GLVGVECITP--YSYKSLAMALQRCVEVLSDEDRSALAFAVVMPPGVDIP----VKLWSCVIPVDICSNEEEQLDDEVA 431 (549)
T ss_dssp -CSSTTCCCSS--SSSSSHHHHHHHHHHTSCHHHHHHTTGGGSSCTTCCEE----HHHHHHHSCC-------CCCTHHHH
T ss_pred -cHHHHHHHHh--cccccccHHHHHHHhccchhhhhHhhheeeeCCCCeee----eeeeeeeccceeccCCCCCCHHHHH
Confidence 2356888999 999999999999999 999999999999 8999999 99975 467777
Q ss_pred HHHHHHHHhCCcccceecCCCCceEEEEeCHHHHHHHHHHhhhcCc
Q 003890 441 EHYLKELIHRGFIQVSKRRAGGTIKACYVPSFVYYSLLSVAVNTGL 486 (788)
Q Consensus 441 ~~~~~~L~~~~ll~~~~~~~~~~~~~~~mHdlv~d~a~~~~~~e~~ 486 (788)
+ ||++|+++||++..... ...+|+|||+||++|+.++.++++
T Consensus 432 ~-~l~~L~~rsLl~~~~~~---~~~~~~mHdlv~~~a~~~~~~~~~ 473 (549)
T 2a5y_B 432 D-RLKRLSKRGALLSGKRM---PVLTFKIDHIIHMFLKHVVDAQTI 473 (549)
T ss_dssp H-HHHHTTTBSSCSEEECS---SSCEEECCHHHHHHHHTTSCTHHH
T ss_pred H-HHHHHHHcCCeeEecCC---CceEEEeChHHHHHHHHHHHHHHH
Confidence 7 99999999999987642 346799999999999988876543
No 2
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=100.00 E-value=2.7e-34 Score=332.63 Aligned_cols=258 Identities=17% Similarity=0.151 Sum_probs=206.2
Q ss_pred CCcccchhcHHHHHHHHhcCCCCcEEEEEEcCCCChHHHHHHHHHcccCcccccce-eEEEEeCCCCChHHHHHHHHHHc
Q 003890 185 LDISEFERGREELFDLLIEGPSGLSVVAILNGSGFDKTAFAADTYNNNHIKFYFDC-LAWVRVSIAYDSGKILDDIIKSV 263 (788)
Q Consensus 185 ~~~vGr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~-~~wv~vs~~~~~~~~~~~il~~l 263 (788)
...|||+.++++|.++|...+ ..++|+|+||||+||||||+++|++.+++.+|+. ++|+++++.++...++..++..+
T Consensus 128 k~~VGRe~eLeeL~elL~~~d-~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~~d~~~IL~~Ll~lL 206 (1221)
T 1vt4_I 128 KYNVSRLQPYLKLRQALLELR-PAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLL 206 (1221)
T ss_dssp CSCCCCHHHHHHHHHHHHHCC-SSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCSSSHHHHHHHHHHHH
T ss_pred CCCCCcHHHHHHHHHHHhccC-CCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 346999999999999998643 4899999999999999999999998889999998 99999999999888888877753
Q ss_pred CC---CCCCcc----cccCCHHHHHHHHHHHh---cCCcEEEEEeCCCCChhhHHHHhhhcCCCCCCcEEEEecCChHHH
Q 003890 264 MP---PSRVSV----IIGEDYKLKKTILRDYL---TNKKYFIVLDDVFNDSDIWDDLEQVLPDNQNGSRVLITVTDLDLL 333 (788)
Q Consensus 264 ~~---~~~~~~----~~~~~~~~~~~~l~~~l---~~kr~LlVLDdvw~~~~~~~~l~~~l~~~~~gskIivTTR~~~v~ 333 (788)
.. ...... ....+.+.+...+++.| .+||+|||||||| +.+.|+.+. +||+||||||++.++
T Consensus 207 ~~i~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVw-d~eqLe~f~-------pGSRILVTTRd~~Va 278 (1221)
T 1vt4_I 207 YQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQ-NAKAWNAFN-------LSCKILLTTRFKQVT 278 (1221)
T ss_dssp HHHCSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCC-CHHHHHHHH-------SSCCEEEECSCSHHH
T ss_pred hhcCcccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcC-hHHHHHhhC-------CCeEEEEeccChHHH
Confidence 21 111000 01123456677788766 6899999999999 888887652 699999999999998
Q ss_pred hhccccCCCccc------h-------------------------------HHHHHHHHhhccCch--hHHHHHHHcCCCC
Q 003890 334 ESLEMENGEKIR------P-------------------------------DSVLIGGQMIRLKHE--SWQFFILHYGSMP 374 (788)
Q Consensus 334 ~~~~~~~~~~~~------~-------------------------------ai~~ig~~L~~~~~~--~W~~~l~~~~~~~ 374 (788)
..+.....+.++ + |++++|+.|+.+... .|+.. .
T Consensus 279 ~~l~g~~vy~LeL~d~dL~LS~eEA~eLF~~~~g~~~eeL~~eICgGLPLALkLaGs~Lr~k~~s~eeW~~~------~- 351 (1221)
T 1vt4_I 279 DFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHV------N- 351 (1221)
T ss_dssp HHHHHHSSCEEEECSSSSCCCHHHHHHHHHHHHCCCTTTHHHHHCCCCHHHHHHHHHHHHHSCSSHHHHHHC------S-
T ss_pred HhcCCCeEEEecCccccCCcCHHHHHHHHHHHcCCCHHHHHHHHhCCCHHHHHHHHHHHhCCCCCHHHHhcC------C-
Confidence 644332112221 1 999999999988533 88653 1
Q ss_pred ccCCccCCChHHHHHhhhccCCCChhh-HHHhhhhhccCCCceechhHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCcc
Q 003890 375 LENYVQGEAIPTIWRQIYAVMELPFHL-KVCCIYLCVFRPSIEISTRQLYQLWVAEGFIPYNSEETAEHYLKELIHRGFI 453 (788)
Q Consensus 375 ~~~~~~~~~i~~~l~~~~sy~~L~~~l-k~cfl~~~~Fp~~~~i~~~~Li~~W~a~g~i~~~~~~~~~~~~~~L~~~~ll 453 (788)
...+..+|+ +||+.||+++ |.||+|||+||+++.|+.+.++.+|+++| ++.++.++++|+++||+
T Consensus 352 ------~~~I~aaLe--lSYd~Lp~eelK~cFL~LAIFPed~~I~~elLa~LW~aeG------eedAe~~L~eLvdRSLL 417 (1221)
T 1vt4_I 352 ------CDKLTTIIE--SSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVI------KSDVMVVVNKLHKYSLV 417 (1221)
T ss_dssp ------CHHHHHHHH--HHHHHSCTTHHHHHHHHTTSSCTTSCEEHHHHHHHHCSSC------SHHHHHHHHHHHTSSSS
T ss_pred ------hhHHHHHHH--HHHHhCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHhcCCC------HHHHHHHHHHHHhhCCE
Confidence 246899999 9999999999 99999999999999999999999999987 24588999999999999
Q ss_pred cceecCCCCceEEEEeCHHHHHHH
Q 003890 454 QVSKRRAGGTIKACYVPSFVYYSL 477 (788)
Q Consensus 454 ~~~~~~~~~~~~~~~mHdlv~d~a 477 (788)
+... ...+|+|||++++++
T Consensus 418 q~d~-----~~~rYrMHDLllELr 436 (1221)
T 1vt4_I 418 EKQP-----KESTISIPSIYLELK 436 (1221)
T ss_dssp SBCS-----SSSEEBCCCHHHHHH
T ss_pred EEeC-----CCCEEEehHHHHHHh
Confidence 9742 225799999999865
No 3
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=1.3e-33 Score=357.18 Aligned_cols=279 Identities=17% Similarity=0.251 Sum_probs=222.1
Q ss_pred CCcccchhcHHHHHHHHhcCCCCcEEEEEEcCCCChHHHHHHHHHcccCc-ccccce-eEEEEeCCCCC--hHHHHHHHH
Q 003890 185 LDISEFERGREELFDLLIEGPSGLSVVAILNGSGFDKTAFAADTYNNNHI-KFYFDC-LAWVRVSIAYD--SGKILDDII 260 (788)
Q Consensus 185 ~~~vGr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~-~~~F~~-~~wv~vs~~~~--~~~~~~~il 260 (788)
..||||++++++|.++|...+...++|+|+||||+||||||+++|++.++ ..+|+. ++|+++++..+ ....+..++
T Consensus 124 ~~~vgR~~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 203 (1249)
T 3sfz_A 124 VIFVTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLLMKLQNLC 203 (1249)
T ss_dssp SSCCCCHHHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHHHHHHHHHH
T ss_pred ceeccHHHHHHHHHHHHhhccCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCchHHHHHHHHHH
Confidence 67999999999999999876667999999999999999999999996543 555655 78999998644 445577788
Q ss_pred HHcCCCCCCcccccCCHHHHHHHHHHHhcCC--cEEEEEeCCCCChhhHHHHhhhcCCCCCCcEEEEecCChHHHhhc-c
Q 003890 261 KSVMPPSRVSVIIGEDYKLKKTILRDYLTNK--KYFIVLDDVFNDSDIWDDLEQVLPDNQNGSRVLITVTDLDLLESL-E 337 (788)
Q Consensus 261 ~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~k--r~LlVLDdvw~~~~~~~~l~~~l~~~~~gskIivTTR~~~v~~~~-~ 337 (788)
..+............+.+.+...++..+.++ |+|||||||| +..+|+.+ ++||+||||||++.|+..+ +
T Consensus 204 ~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~-~~~~~~~~-------~~~~~ilvTtR~~~~~~~~~~ 275 (1249)
T 3sfz_A 204 MRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVW-DPWVLKAF-------DNQCQILLTTRDKSVTDSVMG 275 (1249)
T ss_dssp HHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCC-CHHHHTTT-------CSSCEEEEEESSTTTTTTCCS
T ss_pred HHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCC-CHHHHHhh-------cCCCEEEEEcCCHHHHHhhcC
Confidence 8876654322234567889999999999887 9999999999 87766543 5799999999999998543 2
Q ss_pred ccCCCccc--h------------------------------------HHHHHHHHhhccCchhHHHHHHHcCCCC---cc
Q 003890 338 MENGEKIR--P------------------------------------DSVLIGGQMIRLKHESWQFFILHYGSMP---LE 376 (788)
Q Consensus 338 ~~~~~~~~--~------------------------------------ai~~ig~~L~~~~~~~W~~~l~~~~~~~---~~ 376 (788)
....+.+. . ||+++|+.|+.++ ..|+..++.+.... +.
T Consensus 276 ~~~~~~~~~~l~~~~a~~l~~~~~~~~~~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~-~~~~~~l~~l~~~~~~~~~ 354 (1249)
T 3sfz_A 276 PKHVVPVESGLGREKGLEILSLFVNMKKEDLPAEAHSIIKECKGSPLVVSLIGALLRDFP-NRWAYYLRQLQNKQFKRIR 354 (1249)
T ss_dssp CBCCEECCSSCCHHHHHHHHHHHHTSCSTTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS-SCHHHHHHHHHSCCCCCSS
T ss_pred CceEEEecCCCCHHHHHHHHHHhhCCChhhCcHHHHHHHHHhCCCHHHHHHHHHHhhcCh-hHHHHHHHHHhhhhhhhcc
Confidence 22222221 0 9999999998876 47888888774431 11
Q ss_pred C--CccCCChHHHHHhhhccCCCChhhHHHhhhhhccCCCceechhHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCccc
Q 003890 377 N--YVQGEAIPTIWRQIYAVMELPFHLKVCCIYLCVFRPSIEISTRQLYQLWVAEGFIPYNSEETAEHYLKELIHRGFIQ 454 (788)
Q Consensus 377 ~--~~~~~~i~~~l~~~~sy~~L~~~lk~cfl~~~~Fp~~~~i~~~~Li~~W~a~g~i~~~~~~~~~~~~~~L~~~~ll~ 454 (788)
. .....++..+|. +||+.||+++|.||+|||+||+++.|+++.++.+|.++ ++.++.++++|+++||++
T Consensus 355 ~~~~~~~~~~~~~l~--~s~~~L~~~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~-------~~~~~~~l~~L~~~sl~~ 425 (1249)
T 3sfz_A 355 KSSSYDYEALDEAMS--ISVEMLREDIKDYYTDLSILQKDVKVPTKVLCVLWDLE-------TEEVEDILQEFVNKSLLF 425 (1249)
T ss_dssp CTTCTTHHHHHHHHH--HHHHTSCTTTHHHHHHGGGSCTTCCEEHHHHHHHHTCC-------HHHHHHHHHHHHHTTSCE
T ss_pred cccccchHHHHHHHH--HHHHhCCHHHHHHHHHhCccCCCCeeCHHHHHHHhCCC-------HHHHHHHHHHHHhccceE
Confidence 1 111235899999 99999999999999999999999999999999999755 477899999999999999
Q ss_pred ceecCCCCceEEEEeCHHHHHHHHHHhhhc
Q 003890 455 VSKRRAGGTIKACYVPSFVYYSLLSVAVNT 484 (788)
Q Consensus 455 ~~~~~~~~~~~~~~mHdlv~d~a~~~~~~e 484 (788)
... +++..+|+||+++|++++..+.++
T Consensus 426 ~~~---~~~~~~~~~h~l~~~~~~~~~~~~ 452 (1249)
T 3sfz_A 426 CNR---NGKSFCYYLHDLQVDFLTEKNRSQ 452 (1249)
T ss_dssp EEE---SSSSEEEECCHHHHHHHHHHTGGG
T ss_pred Eec---CCCceEEEecHHHHHHHHhhhhHH
Confidence 764 345578999999999999987654
No 4
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=99.96 E-value=3.3e-29 Score=291.21 Aligned_cols=275 Identities=18% Similarity=0.264 Sum_probs=209.3
Q ss_pred CCcccchhcHHHHHHHHhcCCCCcEEEEEEcCCCChHHHHHHHHHcccCc-ccccc-eeEEEEeCCCCChHHHHHH---H
Q 003890 185 LDISEFERGREELFDLLIEGPSGLSVVAILNGSGFDKTAFAADTYNNNHI-KFYFD-CLAWVRVSIAYDSGKILDD---I 259 (788)
Q Consensus 185 ~~~vGr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~-~~~F~-~~~wv~vs~~~~~~~~~~~---i 259 (788)
..+|||+.++++|.++|.....+.++|+|+||||+||||||++++++.++ +.+|+ .++|++++.. +...++.. +
T Consensus 124 ~~~vGR~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~-~~~~~~~~l~~l 202 (591)
T 1z6t_A 124 VVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQ-DKSGLLMKLQNL 202 (591)
T ss_dssp SSCCCCHHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESC-CHHHHHHHHHHH
T ss_pred CeecccHHHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCC-chHHHHHHHHHH
Confidence 67999999999999999865556899999999999999999999997655 78896 6999999876 33334333 3
Q ss_pred HHHcCCCCCCcccccCCHHHHHHHHHHHhcC--CcEEEEEeCCCCChhhHHHHhhhcCCCCCCcEEEEecCChHHHhhcc
Q 003890 260 IKSVMPPSRVSVIIGEDYKLKKTILRDYLTN--KKYFIVLDDVFNDSDIWDDLEQVLPDNQNGSRVLITVTDLDLLESLE 337 (788)
Q Consensus 260 l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~--kr~LlVLDdvw~~~~~~~~l~~~l~~~~~gskIivTTR~~~v~~~~~ 337 (788)
+..++...........+.+.....+++.+.+ +++|||||||| +...++. + .+|++||||||+..++..+.
T Consensus 203 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~-~~~~l~~----l---~~~~~ilvTsR~~~~~~~~~ 274 (591)
T 1z6t_A 203 CTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVW-DSWVLKA----F---DSQCQILLTTRDKSVTDSVM 274 (591)
T ss_dssp HHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEEC-CHHHHHT----T---CSSCEEEEEESCGGGGTTCC
T ss_pred HHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCC-CHHHHHH----h---cCCCeEEEECCCcHHHHhcC
Confidence 4455432111112345677888888888876 79999999999 7655442 2 56899999999998876543
Q ss_pred ccC-CCcc-ch-------------------------------------HHHHHHHHhhccCchhHHHHHHHcCCCCcc--
Q 003890 338 MEN-GEKI-RP-------------------------------------DSVLIGGQMIRLKHESWQFFILHYGSMPLE-- 376 (788)
Q Consensus 338 ~~~-~~~~-~~-------------------------------------ai~~ig~~L~~~~~~~W~~~l~~~~~~~~~-- 376 (788)
... .+.. .+ |++.+|+.|+... ..|+.+++.+......
T Consensus 275 ~~~~~v~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~-~~w~~~l~~l~~~~~~~~ 353 (591)
T 1z6t_A 275 GPKYVVPVESSLGKEKGLEILSLFVNMKKADLPEQAHSIIKECKGSPLVVSLIGALLRDFP-NRWEYYLKQLQNKQFKRI 353 (591)
T ss_dssp SCEEEEECCSSCCHHHHHHHHHHHHTSCGGGSCTHHHHHHHHHTTCHHHHHHHHHHHHHST-TCHHHHHHHHHSCCCCCS
T ss_pred CCceEeecCCCCCHHHHHHHHHHHhCCCcccccHHHHHHHHHhCCCcHHHHHHHHHHhcCc-hhHHHHHHHHHHhHHHHh
Confidence 210 1110 01 9999999998764 3798888877543111
Q ss_pred -C--CccCCChHHHHHhhhccCCCChhhHHHhhhhhccCCCceechhHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCcc
Q 003890 377 -N--YVQGEAIPTIWRQIYAVMELPFHLKVCCIYLCVFRPSIEISTRQLYQLWVAEGFIPYNSEETAEHYLKELIHRGFI 453 (788)
Q Consensus 377 -~--~~~~~~i~~~l~~~~sy~~L~~~lk~cfl~~~~Fp~~~~i~~~~Li~~W~a~g~i~~~~~~~~~~~~~~L~~~~ll 453 (788)
. .....++..++. +||+.||++.|.||++||+||+++.|+.+.++.+|.++ .+.++.++.+|+++||+
T Consensus 354 ~~~~~~~~~~l~~~l~--~s~~~L~~~~~~~l~~la~f~~~~~i~~~~l~~l~~~~-------~~~~~~~l~~L~~~~Ll 424 (591)
T 1z6t_A 354 RKSSSYDYEALDEAMS--ISVEMLREDIKDYYTDLSILQKDVKVPTKVLCILWDME-------TEEVEDILQEFVNKSLL 424 (591)
T ss_dssp SCCCSSCCHHHHHHHH--HHHHTSCTTTHHHHHHGGGCCTTCCEEHHHHHHHHTCC-------HHHHHHHHHHHHHTTSS
T ss_pred hhccccchHHHHHHHH--HHHHhCCHHHHHHHHHccccCCCCccCHHHHHHHhccC-------HHHHHHHHHHHHhCcCe
Confidence 1 112346899999 99999999999999999999999999999999999654 35578999999999999
Q ss_pred cceecCCCCceEEEEeCHHHHHHHHHHh
Q 003890 454 QVSKRRAGGTIKACYVPSFVYYSLLSVA 481 (788)
Q Consensus 454 ~~~~~~~~~~~~~~~mHdlv~d~a~~~~ 481 (788)
+... ++...+|+||++++++++...
T Consensus 425 ~~~~---~~~~~~~~~H~lv~~~~~~~~ 449 (591)
T 1z6t_A 425 FCDR---NGKSFRYYLHDLQVDFLTEKN 449 (591)
T ss_dssp EEEE---ETTEEEEECCHHHHHHHHHHT
T ss_pred EEec---CCCccEEEEcHHHHHHHHhhh
Confidence 8654 234468999999999998873
No 5
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.87 E-value=9.4e-22 Score=210.52 Aligned_cols=220 Identities=19% Similarity=0.147 Sum_probs=167.6
Q ss_pred CCccccEEEecCCCCCCCCccccCCCCccEEEecCCCCcccChhhcCCCCCcEEEccCCCCcccchhhhcccccceeecc
Q 003890 546 KFKHLRILNLGSAVLVQFPPGLENLFHLKYLKLNIPSLKCLPSLLCTLLNLQTLEMPSSYVDQSPEDIWMMQKLMHLNFG 625 (788)
Q Consensus 546 ~l~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~lp~~l~~L~~L~~L~l~ 625 (788)
...+++.|+|++|.++.+|..++++.+|++|++++|.+..+|..++++++|++|++++|.+..+|..++++++|++|+++
T Consensus 79 ~~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~ 158 (328)
T 4fcg_A 79 TQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIR 158 (328)
T ss_dssp TSTTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEE
T ss_pred cccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECC
Confidence 34677888888888888887788888888888888887778877888888888888888777778778888888888887
Q ss_pred CccCCCCCcCCcCc---------cccccccccccccc-cCccccCCCCCCCeEEEEccCCcChhcHHHhccCCCCCCEEE
Q 003890 626 SITLPAPPKNYSSS---------LKNLIFISTLNPSS-CTPDILGRLPNVQTLRISGDLSCYHSGVSKSLCELHKLECLK 695 (788)
Q Consensus 626 ~~~~~~~i~~~~~~---------l~~L~~L~~~~~~~-~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~ 695 (788)
+|.....+|..++. +++|++|++.++.. ..+..++.+++|+.|++++|. ...++..+..+++|+.|+
T Consensus 159 ~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~---l~~l~~~l~~l~~L~~L~ 235 (328)
T 4fcg_A 159 ACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSP---LSALGPAIHHLPKLEELD 235 (328)
T ss_dssp EETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSC---CCCCCGGGGGCTTCCEEE
T ss_pred CCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCC---CCcCchhhccCCCCCEEE
Confidence 76555555444343 77888888775433 344567888888888888886 335666788888899999
Q ss_pred eecCCCCCcccccccCCCccccccc---cccccccccCcccCCCCCcceEEEeccccccccccCCcccccccccCCeeEe
Q 003890 696 LVNERKPSRMVLYEYQFPPTDMARI---LSQLIRQEFVESEMSLPLLQLLDLEESDEEDDERSDILEILQDINDFVHESE 772 (788)
Q Consensus 696 L~~~~~~~~~~~~~~l~~~~~L~~L---~~~l~~~~lp~~l~~l~~L~~L~L~~~~l~~~~~~~~l~~l~~L~~L~~L~L 772 (788)
|+++.... ..+..+..+++|++| .+.+ ...+|.++..+++|++|+|++|++.+. .++.++++++|+.+++
T Consensus 236 Ls~n~~~~--~~p~~~~~l~~L~~L~L~~n~~-~~~~p~~~~~l~~L~~L~L~~n~~~~~----iP~~l~~L~~L~~l~l 308 (328)
T 4fcg_A 236 LRGCTALR--NYPPIFGGRAPLKRLILKDCSN-LLTLPLDIHRLTQLEKLDLRGCVNLSR----LPSLIAQLPANCIILV 308 (328)
T ss_dssp CTTCTTCC--BCCCCTTCCCCCCEEECTTCTT-CCBCCTTGGGCTTCCEEECTTCTTCCC----CCGGGGGSCTTCEEEC
T ss_pred CcCCcchh--hhHHHhcCCCCCCEEECCCCCc-hhhcchhhhcCCCCCEEeCCCCCchhh----ccHHHhhccCceEEeC
Confidence 98655442 345667778888888 3333 267898899999999999999998886 5667999999999998
Q ss_pred ccc
Q 003890 773 EAI 775 (788)
Q Consensus 773 ~~~ 775 (788)
...
T Consensus 309 ~~~ 311 (328)
T 4fcg_A 309 PPH 311 (328)
T ss_dssp CGG
T ss_pred CHH
Confidence 764
No 6
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.87 E-value=1.7e-22 Score=214.90 Aligned_cols=245 Identities=12% Similarity=0.167 Sum_probs=184.4
Q ss_pred cccceEEecCCCCchhhhhhhhhhhcCCccccEEEecC-CCCC-CCCccccCCCCccEEEecCCCCc-ccChhhcCCCCC
Q 003890 520 IYLQSFLNHSSESDHLALIDCENFCEKFKHLRILNLGS-AVLV-QFPPGLENLFHLKYLKLNIPSLK-CLPSLLCTLLNL 596 (788)
Q Consensus 520 ~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~-~~l~-~lp~~i~~L~~L~~L~L~~~~i~-~lp~~i~~L~~L 596 (788)
.+++.|.+.++...... .+|..|..+++|++|++++ |.+. .+|..++++++|++|++++|.+. .+|..+.++++|
T Consensus 50 ~~l~~L~L~~~~l~~~~--~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L 127 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPY--PIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL 127 (313)
T ss_dssp CCEEEEEEECCCCSSCE--ECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTC
T ss_pred ceEEEEECCCCCccCCc--ccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCC
Confidence 56777777776653200 2346778888888888884 6665 67888888888888888888887 677788888888
Q ss_pred cEEEccCCCCc-ccchhhhcccccceeeccCccCCCCCcCCcCccc-ccccccccccc--ccCccccCCCCCCCeEEEEc
Q 003890 597 QTLEMPSSYVD-QSPEDIWMMQKLMHLNFGSITLPAPPKNYSSSLK-NLIFISTLNPS--SCTPDILGRLPNVQTLRISG 672 (788)
Q Consensus 597 ~~L~L~~~~l~-~lp~~l~~L~~L~~L~l~~~~~~~~i~~~~~~l~-~L~~L~~~~~~--~~~~~~l~~L~~L~~L~l~~ 672 (788)
++|++++|.+. .+|..+.++++|++|++++|.+...+|..++.++ +|+.|++.++. +..+..+..++ |+.|++++
T Consensus 128 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~ 206 (313)
T 1ogq_A 128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSR 206 (313)
T ss_dssp CEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCS
T ss_pred CEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcC
Confidence 88888888666 5777788888888888888766544555557777 78888877543 23455666676 88888888
Q ss_pred cCCcChhcHHHhccCCCCCCEEEeecCCCCCcccccccCCCccccccc---cccccccccCcccCCCCCcceEEEecccc
Q 003890 673 DLSCYHSGVSKSLCELHKLECLKLVNERKPSRMVLYEYQFPPTDMARI---LSQLIRQEFVESEMSLPLLQLLDLEESDE 749 (788)
Q Consensus 673 ~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~l~~~~~L~~L---~~~l~~~~lp~~l~~l~~L~~L~L~~~~l 749 (788)
+. .....+..+..+++|+.|+|+++... ..+..+..+++|++| .+.+ ...+|.++..+++|++|+|++|++
T Consensus 207 N~--l~~~~~~~~~~l~~L~~L~L~~N~l~---~~~~~~~~l~~L~~L~Ls~N~l-~~~~p~~l~~l~~L~~L~Ls~N~l 280 (313)
T 1ogq_A 207 NM--LEGDASVLFGSDKNTQKIHLAKNSLA---FDLGKVGLSKNLNGLDLRNNRI-YGTLPQGLTQLKFLHSLNVSFNNL 280 (313)
T ss_dssp SE--EEECCGGGCCTTSCCSEEECCSSEEC---CBGGGCCCCTTCCEEECCSSCC-EECCCGGGGGCTTCCEEECCSSEE
T ss_pred Cc--ccCcCCHHHhcCCCCCEEECCCCcee---eecCcccccCCCCEEECcCCcc-cCcCChHHhcCcCCCEEECcCCcc
Confidence 76 44456677888888899888865443 234446677888888 5666 347899999999999999999999
Q ss_pred ccccccCCcccccccccCCeeEecccCch
Q 003890 750 EDDERSDILEILQDINDFVHESEEAIDTF 778 (788)
Q Consensus 750 ~~~~~~~~l~~l~~L~~L~~L~L~~~~~l 778 (788)
.+. +|..+.+++|+.|++++++.+
T Consensus 281 ~~~-----ip~~~~l~~L~~l~l~~N~~l 304 (313)
T 1ogq_A 281 CGE-----IPQGGNLQRFDVSAYANNKCL 304 (313)
T ss_dssp EEE-----CCCSTTGGGSCGGGTCSSSEE
T ss_pred ccc-----CCCCccccccChHHhcCCCCc
Confidence 874 666799999999999999854
No 7
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.86 E-value=3.3e-21 Score=216.38 Aligned_cols=268 Identities=14% Similarity=0.116 Sum_probs=195.8
Q ss_pred CCCceeEEEeecCccccc-c--ccccccccceEEecCCCCchhhhhhhhhhhcCCccccEEEecCCCCCCC-CccccCCC
Q 003890 496 PPANVKWCYIMKDLIEFF-S--LEHSDIYLQSFLNHSSESDHLALIDCENFCEKFKHLRILNLGSAVLVQF-PPGLENLF 571 (788)
Q Consensus 496 ~~~~~r~Ls~~~~~~~~~-~--~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l-p~~i~~L~ 571 (788)
.+.++++|.+.++..... + ... +++|+.|.+.++..... +.+..|.++++|++|+|++|.+..+ |..++++.
T Consensus 28 l~~~l~~L~Ls~n~i~~~~~~~~~~-l~~L~~L~L~~n~~~~~---i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 103 (455)
T 3v47_A 28 LPAHVNYVDLSLNSIAELNETSFSR-LQDLQFLKVEQQTPGLV---IRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLA 103 (455)
T ss_dssp CCTTCCEEECCSSCCCEECTTTTSS-CTTCCEEECCCCSTTCE---ECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCT
T ss_pred CCCccCEEEecCCccCcCChhHhcc-CccccEEECcCCcccce---ECcccccccccCCEEeCCCCccCccChhhccCcc
Confidence 457899999998876543 2 556 89999999998875322 2347889999999999999998854 78899999
Q ss_pred CccEEEecCCCCcc-cChh--hcCCCCCcEEEccCCCCccc-chh-hhcccccceeeccCccCCCCCcCCcCcc------
Q 003890 572 HLKYLKLNIPSLKC-LPSL--LCTLLNLQTLEMPSSYVDQS-PED-IWMMQKLMHLNFGSITLPAPPKNYSSSL------ 640 (788)
Q Consensus 572 ~L~~L~L~~~~i~~-lp~~--i~~L~~L~~L~L~~~~l~~l-p~~-l~~L~~L~~L~l~~~~~~~~i~~~~~~l------ 640 (788)
+|++|++++|.+.. +|.. ++++++|++|++++|.+..+ |.. +.++++|++|++++|.+....+..++.+
T Consensus 104 ~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~ 183 (455)
T 3v47_A 104 NLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFT 183 (455)
T ss_dssp TCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEE
T ss_pred cCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhcccccccc
Confidence 99999999999885 4544 88999999999999988777 544 8899999999999886654433333333
Q ss_pred ----------------------------ccccccccccccc---------------------------------------
Q 003890 641 ----------------------------KNLIFISTLNPSS--------------------------------------- 653 (788)
Q Consensus 641 ----------------------------~~L~~L~~~~~~~--------------------------------------- 653 (788)
++|++|++.++..
T Consensus 184 ~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 263 (455)
T 3v47_A 184 LLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKD 263 (455)
T ss_dssp EEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCC
T ss_pred ccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhcc
Confidence 4566665543211
Q ss_pred --------------------------cCccccCCCCCCCeEEEEccCCcChhcHHHhccCCCCCCEEEeecCCCCCcccc
Q 003890 654 --------------------------CTPDILGRLPNVQTLRISGDLSCYHSGVSKSLCELHKLECLKLVNERKPSRMVL 707 (788)
Q Consensus 654 --------------------------~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~ 707 (788)
..+..++.+++|+.|+++++. .....+..+.++++|+.|+|+++.... ..
T Consensus 264 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~--l~~~~~~~~~~l~~L~~L~Ls~N~l~~--~~ 339 (455)
T 3v47_A 264 PDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNE--INKIDDNAFWGLTHLLKLNLSQNFLGS--ID 339 (455)
T ss_dssp CCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSC--CCEECTTTTTTCTTCCEEECCSSCCCE--EC
T ss_pred CcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCc--ccccChhHhcCcccCCEEECCCCccCC--cC
Confidence 012335667777777777776 444445677778888888888654431 23
Q ss_pred cccCCCccccccc---cccccccccCcccCCCCCcceEEEeccccccccccCCcccccccccCCeeEecccC
Q 003890 708 YEYQFPPTDMARI---LSQLIRQEFVESEMSLPLLQLLDLEESDEEDDERSDILEILQDINDFVHESEEAID 776 (788)
Q Consensus 708 ~~~l~~~~~L~~L---~~~l~~~~lp~~l~~l~~L~~L~L~~~~l~~~~~~~~l~~l~~L~~L~~L~L~~~~ 776 (788)
...+..+++|++| .|.+ ....|.++..+++|++|+|++|++... +...+..+++|++|+|++|+
T Consensus 340 ~~~~~~l~~L~~L~Ls~N~l-~~~~~~~~~~l~~L~~L~L~~N~l~~~----~~~~~~~l~~L~~L~l~~N~ 406 (455)
T 3v47_A 340 SRMFENLDKLEVLDLSYNHI-RALGDQSFLGLPNLKELALDTNQLKSV----PDGIFDRLTSLQKIWLHTNP 406 (455)
T ss_dssp GGGGTTCTTCCEEECCSSCC-CEECTTTTTTCTTCCEEECCSSCCSCC----CTTTTTTCTTCCEEECCSSC
T ss_pred hhHhcCcccCCEEECCCCcc-cccChhhccccccccEEECCCCccccC----CHhHhccCCcccEEEccCCC
Confidence 4566778888888 5566 233377788889999999999988865 44457888999999998764
No 8
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.86 E-value=3.4e-21 Score=211.74 Aligned_cols=258 Identities=16% Similarity=0.139 Sum_probs=173.0
Q ss_pred CCceeEEEeecCcccccc---ccccccccceEEecCCCCchhhhhhhhhhhcCCccccEEEecCCCCCCCC-ccccCCCC
Q 003890 497 PANVKWCYIMKDLIEFFS---LEHSDIYLQSFLNHSSESDHLALIDCENFCEKFKHLRILNLGSAVLVQFP-PGLENLFH 572 (788)
Q Consensus 497 ~~~~r~Ls~~~~~~~~~~---~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp-~~i~~L~~ 572 (788)
..+++++.+.++.....+ +.. +++|+.|.+.++... ..++..|..+++|++|++++|.+..+| ..++++++
T Consensus 44 l~~l~~l~l~~~~l~~l~~~~~~~-l~~L~~L~L~~n~i~----~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 118 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMRKLPAALLDS-FRQVELLNLNDLQIE----EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPL 118 (390)
T ss_dssp GCCCSEEEEESCEESEECTHHHHH-CCCCSEEECTTSCCC----EECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred cCCceEEEecCCchhhCChhHhcc-cccCcEEECCCCccc----ccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCC
Confidence 467888999887766554 345 889999999888752 233468889999999999999988665 55788999
Q ss_pred ccEEEecCCCCcccChhh-cCCCCCcEEEccCCCCcccch-hhhcccccceeeccCccCCCCCcCCcCcccccccc----
Q 003890 573 LKYLKLNIPSLKCLPSLL-CTLLNLQTLEMPSSYVDQSPE-DIWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFI---- 646 (788)
Q Consensus 573 L~~L~L~~~~i~~lp~~i-~~L~~L~~L~L~~~~l~~lp~-~l~~L~~L~~L~l~~~~~~~~i~~~~~~l~~L~~L---- 646 (788)
|++|++++|.+..+|..+ .++++|++|++++|.+..++. .+.++++|++|++++|.+...- ++.+++|+.|
T Consensus 119 L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~---~~~l~~L~~L~l~~ 195 (390)
T 3o6n_A 119 LTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSY 195 (390)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCC---GGGCTTCSEEECCS
T ss_pred CCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccc---cccccccceeeccc
Confidence 999999999999888764 889999999999998887754 5888999999999887654311 1333333333
Q ss_pred ------------------------------------ccccccccCccccCCCCCCCeEEEEccCCcChhcHHHhccCCCC
Q 003890 647 ------------------------------------STLNPSSCTPDILGRLPNVQTLRISGDLSCYHSGVSKSLCELHK 690 (788)
Q Consensus 647 ------------------------------------~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~l~~l~~ 690 (788)
++.++....+..+..+++|+.|+++++. .....+..+..+++
T Consensus 196 n~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~l~~l~~L~~L~Ls~n~--l~~~~~~~~~~l~~ 273 (390)
T 3o6n_A 196 NLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNE--LEKIMYHPFVKMQR 273 (390)
T ss_dssp SCCSEEECCSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCCCGGGGGCTTCSEEECCSSC--CCEEESGGGTTCSS
T ss_pred ccccccCCCCcceEEECCCCeeeeccccccccccEEECCCCCCcccHHHcCCCCccEEECCCCc--CCCcChhHcccccc
Confidence 3332222233345556666666666665 33334555666666
Q ss_pred CCEEEeecCCCCCcccccccCCCccccccc---cccccccccCcccCCCCCcceEEEeccccccccccCCcccccccccC
Q 003890 691 LECLKLVNERKPSRMVLYEYQFPPTDMARI---LSQLIRQEFVESEMSLPLLQLLDLEESDEEDDERSDILEILQDINDF 767 (788)
Q Consensus 691 L~~L~L~~~~~~~~~~~~~~l~~~~~L~~L---~~~l~~~~lp~~l~~l~~L~~L~L~~~~l~~~~~~~~l~~l~~L~~L 767 (788)
|+.|+|+++... .....+..+++|++| .+.+ ..+|.++..+++|++|+|++|++.. ++ +..+++|
T Consensus 274 L~~L~L~~n~l~---~~~~~~~~l~~L~~L~L~~n~l--~~~~~~~~~l~~L~~L~L~~N~i~~------~~-~~~~~~L 341 (390)
T 3o6n_A 274 LERLYISNNRLV---ALNLYGQPIPTLKVLDLSHNHL--LHVERNQPQFDRLENLYLDHNSIVT------LK-LSTHHTL 341 (390)
T ss_dssp CCEEECCSSCCC---EEECSSSCCTTCCEEECCSSCC--CCCGGGHHHHTTCSEEECCSSCCCC------CC-CCTTCCC
T ss_pred CCEEECCCCcCc---ccCcccCCCCCCCEEECCCCcc--eecCccccccCcCCEEECCCCccce------eC-chhhccC
Confidence 666666654433 223334456666666 4555 5566556666677777777776653 22 5566777
Q ss_pred CeeEecccC
Q 003890 768 VHESEEAID 776 (788)
Q Consensus 768 ~~L~L~~~~ 776 (788)
++|++++++
T Consensus 342 ~~L~l~~N~ 350 (390)
T 3o6n_A 342 KNLTLSHND 350 (390)
T ss_dssp SEEECCSSC
T ss_pred CEEEcCCCC
Confidence 777777664
No 9
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.85 E-value=5.5e-21 Score=221.99 Aligned_cols=258 Identities=16% Similarity=0.145 Sum_probs=172.5
Q ss_pred CCceeEEEeecCcccccc---ccccccccceEEecCCCCchhhhhhhhhhhcCCccccEEEecCCCCCCCCc-cccCCCC
Q 003890 497 PANVKWCYIMKDLIEFFS---LEHSDIYLQSFLNHSSESDHLALIDCENFCEKFKHLRILNLGSAVLVQFPP-GLENLFH 572 (788)
Q Consensus 497 ~~~~r~Ls~~~~~~~~~~---~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~-~i~~L~~ 572 (788)
..+++.+.+.++.....+ +.. +++|+.|.+.++... ..++..|..+++|++|+|++|.++.+|. .|+++++
T Consensus 50 l~~l~~l~l~~~~l~~lp~~~~~~-l~~L~~L~L~~n~l~----~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 124 (597)
T 3oja_B 50 LNNQKIVTFKNSTMRKLPAALLDS-FRQVELLNLNDLQIE----EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPL 124 (597)
T ss_dssp GCCCSEEEESSCEESEECTHHHHH-CCCCSEEECTTSCCC----EECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred CCCceEEEeeCCCCCCcCHHHHcc-CCCCcEEECCCCCCC----CCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCC
Confidence 356777888776655444 344 788888888887652 2334678888888888888888886654 4688888
Q ss_pred ccEEEecCCCCcccChh-hcCCCCCcEEEccCCCCcccch-hhhcccccceeeccCccCCCCCcCCcCcccccc------
Q 003890 573 LKYLKLNIPSLKCLPSL-LCTLLNLQTLEMPSSYVDQSPE-DIWMMQKLMHLNFGSITLPAPPKNYSSSLKNLI------ 644 (788)
Q Consensus 573 L~~L~L~~~~i~~lp~~-i~~L~~L~~L~L~~~~l~~lp~-~l~~L~~L~~L~l~~~~~~~~i~~~~~~l~~L~------ 644 (788)
|++|+|++|.+..+|.. ++++++|++|++++|.+..+|. .++++++|++|++++|.+...- ++.+++|+
T Consensus 125 L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~l~~L~~L~l~~ 201 (597)
T 3oja_B 125 LTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSY 201 (597)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC---GGGCTTCSEEECCS
T ss_pred CCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC---hhhhhhhhhhhccc
Confidence 88888888888888776 4788888888888887777654 5888888888888877554211 13333333
Q ss_pred ----------------------------------ccccccccccCccccCCCCCCCeEEEEccCCcChhcHHHhccCCCC
Q 003890 645 ----------------------------------FISTLNPSSCTPDILGRLPNVQTLRISGDLSCYHSGVSKSLCELHK 690 (788)
Q Consensus 645 ----------------------------------~L~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~l~~l~~ 690 (788)
.|++.++....+..+..+++|+.|++++|. .....+..+..+++
T Consensus 202 n~l~~l~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~l~~l~~L~~L~Ls~N~--l~~~~~~~~~~l~~ 279 (597)
T 3oja_B 202 NLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNE--LEKIMYHPFVKMQR 279 (597)
T ss_dssp SCCSEEECCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCCCGGGGGCTTCSEEECCSSC--CCEEESGGGTTCSS
T ss_pred CccccccCCchhheeeccCCcccccccccCCCCCEEECCCCCCCCChhhccCCCCCEEECCCCc--cCCCCHHHhcCccC
Confidence 333333333333445666677777777665 44444566667777
Q ss_pred CCEEEeecCCCCCcccccccCCCccccccc---cccccccccCcccCCCCCcceEEEeccccccccccCCcccccccccC
Q 003890 691 LECLKLVNERKPSRMVLYEYQFPPTDMARI---LSQLIRQEFVESEMSLPLLQLLDLEESDEEDDERSDILEILQDINDF 767 (788)
Q Consensus 691 L~~L~L~~~~~~~~~~~~~~l~~~~~L~~L---~~~l~~~~lp~~l~~l~~L~~L~L~~~~l~~~~~~~~l~~l~~L~~L 767 (788)
|+.|+|+++... .....+..+++|+.| .|.+ ..+|.++..+++|++|+|++|.+... + ++.+++|
T Consensus 280 L~~L~Ls~N~l~---~l~~~~~~l~~L~~L~Ls~N~l--~~i~~~~~~l~~L~~L~L~~N~l~~~------~-~~~~~~L 347 (597)
T 3oja_B 280 LERLYISNNRLV---ALNLYGQPIPTLKVLDLSHNHL--LHVERNQPQFDRLENLYLDHNSIVTL------K-LSTHHTL 347 (597)
T ss_dssp CCEEECTTSCCC---EEECSSSCCTTCCEEECCSSCC--CCCGGGHHHHTTCSEEECCSSCCCCC------C-CCTTCCC
T ss_pred CCEEECCCCCCC---CCCcccccCCCCcEEECCCCCC--CccCcccccCCCCCEEECCCCCCCCc------C-hhhcCCC
Confidence 777777765444 334444556677777 5556 56666666677777777777776642 2 5667777
Q ss_pred CeeEecccC
Q 003890 768 VHESEEAID 776 (788)
Q Consensus 768 ~~L~L~~~~ 776 (788)
++|+|++|+
T Consensus 348 ~~L~l~~N~ 356 (597)
T 3oja_B 348 KNLTLSHND 356 (597)
T ss_dssp SEEECCSSC
T ss_pred CEEEeeCCC
Confidence 777777765
No 10
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.84 E-value=4.6e-20 Score=199.25 Aligned_cols=254 Identities=16% Similarity=0.176 Sum_probs=138.8
Q ss_pred CCceeEEEeecCcccccc-ccccccccceEEecCCCCchhhhhhhhhhhcCCccccEEEecCCCCCCCCccccCCCCccE
Q 003890 497 PANVKWCYIMKDLIEFFS-LEHSDIYLQSFLNHSSESDHLALIDCENFCEKFKHLRILNLGSAVLVQFPPGLENLFHLKY 575 (788)
Q Consensus 497 ~~~~r~Ls~~~~~~~~~~-~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~i~~L~~L~~ 575 (788)
..++++|.+.++.....+ ... +++|++|.+.++.... + +.|..+++|++|++++|.+..+|. +..+++|++
T Consensus 65 ~~~L~~L~l~~n~i~~~~~~~~-l~~L~~L~L~~n~i~~-~-----~~~~~l~~L~~L~l~~n~i~~~~~-~~~l~~L~~ 136 (347)
T 4fmz_A 65 LTNLEYLNLNGNQITDISPLSN-LVKLTNLYIGTNKITD-I-----SALQNLTNLRELYLNEDNISDISP-LANLTKMYS 136 (347)
T ss_dssp CTTCCEEECCSSCCCCCGGGTT-CTTCCEEECCSSCCCC-C-----GGGTTCTTCSEEECTTSCCCCCGG-GTTCTTCCE
T ss_pred cCCccEEEccCCccccchhhhc-CCcCCEEEccCCcccC-c-----hHHcCCCcCCEEECcCCcccCchh-hccCCceeE
Confidence 345667777665544333 444 6777777776665421 1 346667777777777777666554 666666666
Q ss_pred EEecCCCCcccChhhcCCCCCcEEEccCCCCcccchhhhcccccceeeccCccCCCCCcCCcCccccccccccccccccC
Q 003890 576 LKLNIPSLKCLPSLLCTLLNLQTLEMPSSYVDQSPEDIWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFISTLNPSSCT 655 (788)
Q Consensus 576 L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~lp~~l~~L~~L~~L~l~~~~~~~~i~~~~~~l~~L~~L~~~~~~~~~ 655 (788)
|++++|.....+..+..+++|++|++++|.+..++. +..+++|++|++++|.+.. ++. +..+++|+.|++.++....
T Consensus 137 L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~l~~L~~L~l~~n~l~~-~~~-~~~l~~L~~L~l~~n~l~~ 213 (347)
T 4fmz_A 137 LNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP-IANLTDLYSLSLNYNQIED-ISP-LASLTSLHYFTAYVNQITD 213 (347)
T ss_dssp EECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECTTSCCCC-CGG-GGGCTTCCEEECCSSCCCC
T ss_pred EECCCCCCcccccchhhCCCCcEEEecCCCcCCchh-hccCCCCCEEEccCCcccc-ccc-ccCCCccceeecccCCCCC
Confidence 666666433333346666666666666666665555 6666666666666664432 111 3455555555555443333
Q ss_pred ccccCCCCCCCeEEEEccCCcChhcHHHhccCCCCCCEEEeecCCCCCcccccccCCCccccccc---cccccccccCcc
Q 003890 656 PDILGRLPNVQTLRISGDLSCYHSGVSKSLCELHKLECLKLVNERKPSRMVLYEYQFPPTDMARI---LSQLIRQEFVES 732 (788)
Q Consensus 656 ~~~l~~L~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~l~~~~~L~~L---~~~l~~~~lp~~ 732 (788)
...+..+++|+.|++++|. ....+. +..+++|+.|+++++... .++.+..+++|++| .+.+ ..+| +
T Consensus 214 ~~~~~~~~~L~~L~l~~n~---l~~~~~-~~~l~~L~~L~l~~n~l~----~~~~~~~l~~L~~L~l~~n~l--~~~~-~ 282 (347)
T 4fmz_A 214 ITPVANMTRLNSLKIGNNK---ITDLSP-LANLSQLTWLEIGTNQIS----DINAVKDLTKLKMLNVGSNQI--SDIS-V 282 (347)
T ss_dssp CGGGGGCTTCCEEECCSSC---CCCCGG-GTTCTTCCEEECCSSCCC----CCGGGTTCTTCCEEECCSSCC--CCCG-G
T ss_pred CchhhcCCcCCEEEccCCc---cCCCcc-hhcCCCCCEEECCCCccC----CChhHhcCCCcCEEEccCCcc--CCCh-h
Confidence 3335555666666666554 112222 555556666666544322 12344455555555 3344 3333 3
Q ss_pred cCCCCCcceEEEeccccccccccCCcccccccccCCeeEecccC
Q 003890 733 EMSLPLLQLLDLEESDEEDDERSDILEILQDINDFVHESEEAID 776 (788)
Q Consensus 733 l~~l~~L~~L~L~~~~l~~~~~~~~l~~l~~L~~L~~L~L~~~~ 776 (788)
+..+++|+.|+|++|.+... ....++.+++|++|++++|+
T Consensus 283 ~~~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~L~~n~ 322 (347)
T 4fmz_A 283 LNNLSQLNSLFLNNNQLGNE----DMEVIGGLTNLTTLFLSQNH 322 (347)
T ss_dssp GGGCTTCSEEECCSSCCCGG----GHHHHHTCTTCSEEECCSSS
T ss_pred hcCCCCCCEEECcCCcCCCc----ChhHhhccccCCEEEccCCc
Confidence 45555555566655555543 33345555555555555554
No 11
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.84 E-value=2.4e-20 Score=210.79 Aligned_cols=269 Identities=17% Similarity=0.122 Sum_probs=180.3
Q ss_pred CCCceeEEEeecCcccccc---ccccccccceEEecCCCCchhhhhhhhhhhcCCccccEEEecCCCCCCCCcc-ccCCC
Q 003890 496 PPANVKWCYIMKDLIEFFS---LEHSDIYLQSFLNHSSESDHLALIDCENFCEKFKHLRILNLGSAVLVQFPPG-LENLF 571 (788)
Q Consensus 496 ~~~~~r~Ls~~~~~~~~~~---~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~-i~~L~ 571 (788)
.+.+++.|.+.++...... +.. +++|+.|.+.++... ...+..|.++++|++|+|++|.++.+|.. +.++.
T Consensus 30 ~~~~l~~L~L~~n~l~~~~~~~~~~-l~~L~~L~L~~n~i~----~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 104 (477)
T 2id5_A 30 IPTETRLLDLGKNRIKTLNQDEFAS-FPHLEELELNENIVS----AVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLS 104 (477)
T ss_dssp CCTTCSEEECCSSCCCEECTTTTTT-CTTCCEEECTTSCCC----EECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCT
T ss_pred CCCCCcEEECCCCccceECHhHccC-CCCCCEEECCCCccC----EeChhhhhCCccCCEEECCCCcCCccCcccccCCC
Confidence 4567888888877665442 455 788888888877652 23346778888888888888888877654 67788
Q ss_pred CccEEEecCCCCccc-ChhhcCCCCCcEEEccCCCCcccc-hhhhcccccceeeccCccCCCCCcCCcCccccccccccc
Q 003890 572 HLKYLKLNIPSLKCL-PSLLCTLLNLQTLEMPSSYVDQSP-EDIWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFISTL 649 (788)
Q Consensus 572 ~L~~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~~l~~lp-~~l~~L~~L~~L~l~~~~~~~~i~~~~~~l~~L~~L~~~ 649 (788)
+|++|++++|.+..+ |..+.++++|++|++++|.+..++ ..+.++++|++|++++|.+....+..|+.+++|+.|++.
T Consensus 105 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~ 184 (477)
T 2id5_A 105 NLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLR 184 (477)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEE
T ss_pred CCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCC
Confidence 888888888887755 456777888888888877766664 357777777777777776554333334666666666665
Q ss_pred ccccc--CccccCCCCCCCeEEEEccCC---------------------c-ChhcHHHhccCCCCCCEEEeecCCCCCcc
Q 003890 650 NPSSC--TPDILGRLPNVQTLRISGDLS---------------------C-YHSGVSKSLCELHKLECLKLVNERKPSRM 705 (788)
Q Consensus 650 ~~~~~--~~~~l~~L~~L~~L~l~~~~~---------------------~-~~~~~~~~l~~l~~L~~L~L~~~~~~~~~ 705 (788)
++... ....+..+++|+.|+++++.. + ........+..+++|+.|+|+++....
T Consensus 185 ~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-- 262 (477)
T 2id5_A 185 HLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPIST-- 262 (477)
T ss_dssp SCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCE--
T ss_pred CCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCc--
Confidence 43222 112345555555555554320 0 122222456777888888888654331
Q ss_pred cccccCCCccccccc---cccccccccCcccCCCCCcceEEEeccccccccccCCcccccccccCCeeEecccC
Q 003890 706 VLYEYQFPPTDMARI---LSQLIRQEFVESEMSLPLLQLLDLEESDEEDDERSDILEILQDINDFVHESEEAID 776 (788)
Q Consensus 706 ~~~~~l~~~~~L~~L---~~~l~~~~lp~~l~~l~~L~~L~L~~~~l~~~~~~~~l~~l~~L~~L~~L~L~~~~ 776 (788)
.....+..+++|+.| .+.+ ....|..+..+++|+.|+|++|.+... ....+..+++|++|+|++++
T Consensus 263 ~~~~~~~~l~~L~~L~L~~n~l-~~~~~~~~~~l~~L~~L~L~~N~l~~~----~~~~~~~l~~L~~L~l~~N~ 331 (477)
T 2id5_A 263 IEGSMLHELLRLQEIQLVGGQL-AVVEPYAFRGLNYLRVLNVSGNQLTTL----EESVFHSVGNLETLILDSNP 331 (477)
T ss_dssp ECTTSCTTCTTCCEEECCSSCC-SEECTTTBTTCTTCCEEECCSSCCSCC----CGGGBSCGGGCCEEECCSSC
T ss_pred cChhhccccccCCEEECCCCcc-ceECHHHhcCcccCCEEECCCCcCcee----CHhHcCCCcccCEEEccCCC
Confidence 334556778888888 5556 233466788899999999999998865 44567889999999998875
No 12
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.84 E-value=5.9e-20 Score=197.00 Aligned_cols=261 Identities=15% Similarity=0.090 Sum_probs=174.7
Q ss_pred ceeEEEeecCccccccccccccccceEEecCCCCchhhhhhhhhhhcCCccccEEEecCCCCCCC-CccccCCCCccEEE
Q 003890 499 NVKWCYIMKDLIEFFSLEHSDIYLQSFLNHSSESDHLALIDCENFCEKFKHLRILNLGSAVLVQF-PPGLENLFHLKYLK 577 (788)
Q Consensus 499 ~~r~Ls~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l-p~~i~~L~~L~~L~ 577 (788)
+.+.+.+.++.....+..- .++++.|.+.++... ..++..|.++++|++|++++|.++.+ |..++++++|++|+
T Consensus 32 ~l~~l~~~~~~l~~lp~~~-~~~l~~L~L~~n~i~----~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 106 (330)
T 1xku_A 32 HLRVVQCSDLGLEKVPKDL-PPDTALLDLQNNKIT----EIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLY 106 (330)
T ss_dssp ETTEEECTTSCCCSCCCSC-CTTCCEEECCSSCCC----CBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEE
T ss_pred CCeEEEecCCCccccCccC-CCCCeEEECCCCcCC----EeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEE
Confidence 3455555554444444333 567788888777652 22335677888888888888887755 67788888888888
Q ss_pred ecCCCCcccChhhcCCCCCcEEEccCCCCcccch-hhhcccccceeeccCccCCC--CCcCCcCcccccccccccccccc
Q 003890 578 LNIPSLKCLPSLLCTLLNLQTLEMPSSYVDQSPE-DIWMMQKLMHLNFGSITLPA--PPKNYSSSLKNLIFISTLNPSSC 654 (788)
Q Consensus 578 L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~lp~-~l~~L~~L~~L~l~~~~~~~--~i~~~~~~l~~L~~L~~~~~~~~ 654 (788)
+++|.+..+|..+. ++|++|++++|.+..++. .+.++++|++|++++|.+.. ..+..|+.+++|+.|++.++...
T Consensus 107 Ls~n~l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~ 184 (330)
T 1xku_A 107 LSKNQLKELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT 184 (330)
T ss_dssp CCSSCCSBCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC
T ss_pred CCCCcCCccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccc
Confidence 88888888876654 678888888887777765 47788888888888775532 22333477778888877754433
Q ss_pred CccccCCCCCCCeEEEEccCCcChhcHHHhccCCCCCCEEEeecCCCCCcccccccCCCccccccc---cccccccccCc
Q 003890 655 TPDILGRLPNVQTLRISGDLSCYHSGVSKSLCELHKLECLKLVNERKPSRMVLYEYQFPPTDMARI---LSQLIRQEFVE 731 (788)
Q Consensus 655 ~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~l~~~~~L~~L---~~~l~~~~lp~ 731 (788)
.++. .-.++|+.|+++++. .....+..+..+++|+.|+|+++.... .....+..+++|++| .+.+ ..+|.
T Consensus 185 ~l~~-~~~~~L~~L~l~~n~--l~~~~~~~~~~l~~L~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~L~~N~l--~~lp~ 257 (330)
T 1xku_A 185 TIPQ-GLPPSLTELHLDGNK--ITKVDAASLKGLNNLAKLGLSFNSISA--VDNGSLANTPHLRELHLNNNKL--VKVPG 257 (330)
T ss_dssp SCCS-SCCTTCSEEECTTSC--CCEECTGGGTTCTTCCEEECCSSCCCE--ECTTTGGGSTTCCEEECCSSCC--SSCCT
T ss_pred cCCc-cccccCCEEECCCCc--CCccCHHHhcCCCCCCEEECCCCcCce--eChhhccCCCCCCEEECCCCcC--ccCCh
Confidence 2222 112678888888776 333445677778888888888654431 233456667778887 5666 67787
Q ss_pred ccCCCCCcceEEEeccccccccccCCccccc------ccccCCeeEecccCc
Q 003890 732 SEMSLPLLQLLDLEESDEEDDERSDILEILQ------DINDFVHESEEAIDT 777 (788)
Q Consensus 732 ~l~~l~~L~~L~L~~~~l~~~~~~~~l~~l~------~L~~L~~L~L~~~~~ 777 (788)
++..+++|++|+|++|++... +...+. ..+.|+.|++++++-
T Consensus 258 ~l~~l~~L~~L~l~~N~i~~~----~~~~f~~~~~~~~~~~l~~l~l~~N~~ 305 (330)
T 1xku_A 258 GLADHKYIQVVYLHNNNISAI----GSNDFCPPGYNTKKASYSGVSLFSNPV 305 (330)
T ss_dssp TTTTCSSCCEEECCSSCCCCC----CTTSSSCSSCCTTSCCCSEEECCSSSS
T ss_pred hhccCCCcCEEECCCCcCCcc----ChhhcCCcccccccccccceEeecCcc
Confidence 787888888888888887764 322332 246777888887764
No 13
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.84 E-value=5.8e-21 Score=223.16 Aligned_cols=224 Identities=13% Similarity=0.120 Sum_probs=155.2
Q ss_pred hhhhhcCCccccEEEecCCCCCC------------------CCcccc--CCCCccEEEecCCCCc-ccChhhcCCCCCcE
Q 003890 540 CENFCEKFKHLRILNLGSAVLVQ------------------FPPGLE--NLFHLKYLKLNIPSLK-CLPSLLCTLLNLQT 598 (788)
Q Consensus 540 ~~~~~~~l~~L~~L~L~~~~l~~------------------lp~~i~--~L~~L~~L~L~~~~i~-~lp~~i~~L~~L~~ 598 (788)
+|..|.++++|++|+|++|.++. +|..++ ++++|++|++++|.+. .+|..++++++|++
T Consensus 198 ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 277 (636)
T 4eco_A 198 VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQL 277 (636)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCE
T ss_pred CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCE
Confidence 56778889999999999999887 898888 9999999999998855 77888999999999
Q ss_pred EEccCCC-Ccc--cchhhhcc------cccceeeccCccCCCCCcC--CcCcccccccccccccccc-CccccCCCCCCC
Q 003890 599 LEMPSSY-VDQ--SPEDIWMM------QKLMHLNFGSITLPAPPKN--YSSSLKNLIFISTLNPSSC-TPDILGRLPNVQ 666 (788)
Q Consensus 599 L~L~~~~-l~~--lp~~l~~L------~~L~~L~l~~~~~~~~i~~--~~~~l~~L~~L~~~~~~~~-~~~~l~~L~~L~ 666 (788)
|++++|. +.. +|..++++ ++|++|++++|.+. .+|. .|+.+++|++|++.++... .++.++.+++|+
T Consensus 278 L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip~~~~l~~L~ 356 (636)
T 4eco_A 278 INVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLA 356 (636)
T ss_dssp EECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECCCCEEEEEES
T ss_pred EECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchhhhCCCCCCC
Confidence 9999996 774 88888877 89999999888777 6766 6788888888888765433 333777778888
Q ss_pred eEEEEccCCcChhcHHHhccCCCC-CCEEEeecCCCCCcccccccCCCc--cccccc---cccccccccCcccC------
Q 003890 667 TLRISGDLSCYHSGVSKSLCELHK-LECLKLVNERKPSRMVLYEYQFPP--TDMARI---LSQLIRQEFVESEM------ 734 (788)
Q Consensus 667 ~L~l~~~~~~~~~~~~~~l~~l~~-L~~L~L~~~~~~~~~~~~~~l~~~--~~L~~L---~~~l~~~~lp~~l~------ 734 (788)
.|+++++. ...++..+.++++ |+.|+|+++... ..+..+..+ ++|+.| .+.+ ....|.++.
T Consensus 357 ~L~L~~N~---l~~lp~~l~~l~~~L~~L~Ls~N~l~---~lp~~~~~~~l~~L~~L~Ls~N~l-~~~~p~~l~~~~~~~ 429 (636)
T 4eco_A 357 SLNLAYNQ---ITEIPANFCGFTEQVENLSFAHNKLK---YIPNIFDAKSVSVMSAIDFSYNEI-GSVDGKNFDPLDPTP 429 (636)
T ss_dssp EEECCSSE---EEECCTTSEEECTTCCEEECCSSCCS---SCCSCCCTTCSSCEEEEECCSSCT-TTTTTCSSCTTCSSC
T ss_pred EEECCCCc---cccccHhhhhhcccCcEEEccCCcCc---ccchhhhhcccCccCEEECcCCcC-CCcchhhhccccccc
Confidence 88888775 3366667777777 888888765433 223333332 255555 3333 223344444
Q ss_pred -CCCCcceEEEeccccccccccCCcccccccccCCeeEeccc
Q 003890 735 -SLPLLQLLDLEESDEEDDERSDILEILQDINDFVHESEEAI 775 (788)
Q Consensus 735 -~l~~L~~L~L~~~~l~~~~~~~~l~~l~~L~~L~~L~L~~~ 775 (788)
.+++|++|+|++|.+... +...+..+++|++|+|++|
T Consensus 430 ~~~~~L~~L~Ls~N~l~~l----p~~~~~~l~~L~~L~Ls~N 467 (636)
T 4eco_A 430 FKGINVSSINLSNNQISKF----PKELFSTGSPLSSINLMGN 467 (636)
T ss_dssp CCCCCEEEEECCSSCCCSC----CTHHHHTTCCCSEEECCSS
T ss_pred ccCCCCCEEECcCCccCcC----CHHHHccCCCCCEEECCCC
Confidence 445555555555555532 1122334555555555554
No 14
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.83 E-value=9.2e-20 Score=196.89 Aligned_cols=252 Identities=13% Similarity=0.156 Sum_probs=205.0
Q ss_pred CCceeEEEeecCcccccc-ccccccccceEEecCCCCchhhhhhhhhhhcCCccccEEEecCCCCCCCCccccCCCCccE
Q 003890 497 PANVKWCYIMKDLIEFFS-LEHSDIYLQSFLNHSSESDHLALIDCENFCEKFKHLRILNLGSAVLVQFPPGLENLFHLKY 575 (788)
Q Consensus 497 ~~~~r~Ls~~~~~~~~~~-~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~i~~L~~L~~ 575 (788)
..++++|.+.++.....+ ... +++|+.|.+.++... .+ +. +..+++|++|++++|.++.+| .+..+++|++
T Consensus 43 l~~L~~L~l~~~~i~~~~~~~~-~~~L~~L~l~~n~i~-~~----~~-~~~l~~L~~L~L~~n~i~~~~-~~~~l~~L~~ 114 (347)
T 4fmz_A 43 LESITKLVVAGEKVASIQGIEY-LTNLEYLNLNGNQIT-DI----SP-LSNLVKLTNLYIGTNKITDIS-ALQNLTNLRE 114 (347)
T ss_dssp HTTCSEEECCSSCCCCCTTGGG-CTTCCEEECCSSCCC-CC----GG-GTTCTTCCEEECCSSCCCCCG-GGTTCTTCSE
T ss_pred cccccEEEEeCCccccchhhhh-cCCccEEEccCCccc-cc----hh-hhcCCcCCEEEccCCcccCch-HHcCCCcCCE
Confidence 456889999887665554 555 999999999998763 12 13 899999999999999998875 6999999999
Q ss_pred EEecCCCCcccChhhcCCCCCcEEEccCC-CCcccchhhhcccccceeeccCccCCCCCcCCcCcccccccccccccccc
Q 003890 576 LKLNIPSLKCLPSLLCTLLNLQTLEMPSS-YVDQSPEDIWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFISTLNPSSC 654 (788)
Q Consensus 576 L~L~~~~i~~lp~~i~~L~~L~~L~L~~~-~l~~lp~~l~~L~~L~~L~l~~~~~~~~i~~~~~~l~~L~~L~~~~~~~~ 654 (788)
|++++|.+..+|. +..+++|++|++++| .+..++. +..+++|++|++++|.+.... . ++.+++|++|++.++...
T Consensus 115 L~l~~n~i~~~~~-~~~l~~L~~L~l~~n~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~-~-~~~l~~L~~L~l~~n~l~ 190 (347)
T 4fmz_A 115 LYLNEDNISDISP-LANLTKMYSLNLGANHNLSDLSP-LSNMTGLNYLTVTESKVKDVT-P-IANLTDLYSLSLNYNQIE 190 (347)
T ss_dssp EECTTSCCCCCGG-GTTCTTCCEEECTTCTTCCCCGG-GTTCTTCCEEECCSSCCCCCG-G-GGGCTTCSEEECTTSCCC
T ss_pred EECcCCcccCchh-hccCCceeEEECCCCCCcccccc-hhhCCCCcEEEecCCCcCCch-h-hccCCCCCEEEccCCccc
Confidence 9999999999876 899999999999999 5555554 999999999999998765432 2 588999999999887766
Q ss_pred CccccCCCCCCCeEEEEccCCcChhcHHHhccCCCCCCEEEeecCCCCCcccccccCCCccccccc---cccccccccCc
Q 003890 655 TPDILGRLPNVQTLRISGDLSCYHSGVSKSLCELHKLECLKLVNERKPSRMVLYEYQFPPTDMARI---LSQLIRQEFVE 731 (788)
Q Consensus 655 ~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~l~~~~~L~~L---~~~l~~~~lp~ 731 (788)
.+..+..+++|+.|+++++. ....+. +..+++|+.|+++++... ....+..+++|++| .+.+ ..++
T Consensus 191 ~~~~~~~l~~L~~L~l~~n~---l~~~~~-~~~~~~L~~L~l~~n~l~----~~~~~~~l~~L~~L~l~~n~l--~~~~- 259 (347)
T 4fmz_A 191 DISPLASLTSLHYFTAYVNQ---ITDITP-VANMTRLNSLKIGNNKIT----DLSPLANLSQLTWLEIGTNQI--SDIN- 259 (347)
T ss_dssp CCGGGGGCTTCCEEECCSSC---CCCCGG-GGGCTTCCEEECCSSCCC----CCGGGTTCTTCCEEECCSSCC--CCCG-
T ss_pred ccccccCCCccceeecccCC---CCCCch-hhcCCcCCEEEccCCccC----CCcchhcCCCCCEEECCCCcc--CCCh-
Confidence 66668899999999999986 222222 788899999999976544 22337788899999 5666 5555
Q ss_pred ccCCCCCcceEEEeccccccccccCCcccccccccCCeeEecccCc
Q 003890 732 SEMSLPLLQLLDLEESDEEDDERSDILEILQDINDFVHESEEAIDT 777 (788)
Q Consensus 732 ~l~~l~~L~~L~L~~~~l~~~~~~~~l~~l~~L~~L~~L~L~~~~~ 777 (788)
.+..+++|++|++++|.+.. ++.+..+++|++|++++|.-
T Consensus 260 ~~~~l~~L~~L~l~~n~l~~------~~~~~~l~~L~~L~L~~n~l 299 (347)
T 4fmz_A 260 AVKDLTKLKMLNVGSNQISD------ISVLNNLSQLNSLFLNNNQL 299 (347)
T ss_dssp GGTTCTTCCEEECCSSCCCC------CGGGGGCTTCSEEECCSSCC
T ss_pred hHhcCCCcCEEEccCCccCC------ChhhcCCCCCCEEECcCCcC
Confidence 68899999999999999884 57789999999999999964
No 15
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.83 E-value=8.9e-20 Score=206.04 Aligned_cols=245 Identities=15% Similarity=0.110 Sum_probs=159.9
Q ss_pred CCceeEEEeecCccccc-c--ccccccccceEEecCCCCchhhhhhhhhhhcCCccccEEEecCCCCCCC-CccccCCCC
Q 003890 497 PANVKWCYIMKDLIEFF-S--LEHSDIYLQSFLNHSSESDHLALIDCENFCEKFKHLRILNLGSAVLVQF-PPGLENLFH 572 (788)
Q Consensus 497 ~~~~r~Ls~~~~~~~~~-~--~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l-p~~i~~L~~ 572 (788)
..+++.|.+.++..... + +.. +++|+.|.+.++... .+++..|.++++|++|+|++|.+..+ |..+..+.+
T Consensus 55 l~~L~~L~L~~n~i~~~~~~~~~~-l~~L~~L~L~~n~l~----~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~ 129 (477)
T 2id5_A 55 FPHLEELELNENIVSAVEPGAFNN-LFNLRTLGLRSNRLK----LIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYN 129 (477)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTT-CTTCCEEECCSSCCC----SCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTT
T ss_pred CCCCCEEECCCCccCEeChhhhhC-CccCCEEECCCCcCC----ccCcccccCCCCCCEEECCCCccccCChhHcccccc
Confidence 34567777766654432 2 344 677777777666542 12235566677777777777776633 455666777
Q ss_pred ccEEEecCCCCccc-ChhhcCCCCCcEEEccCCCCcccch-hhhcccccceeeccCccCCCCCcCCcCccccccccc---
Q 003890 573 LKYLKLNIPSLKCL-PSLLCTLLNLQTLEMPSSYVDQSPE-DIWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFIS--- 647 (788)
Q Consensus 573 L~~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~~l~~lp~-~l~~L~~L~~L~l~~~~~~~~i~~~~~~l~~L~~L~--- 647 (788)
|++|++++|.+..+ |..+.++.+|++|++++|.+..+|. .+.++++|+.|++++|.+....+..|..+++|+.|+
T Consensus 130 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~ 209 (477)
T 2id5_A 130 LKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISH 209 (477)
T ss_dssp CCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEEC
T ss_pred CCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCC
Confidence 77777777766655 3456666777777777776666654 366666666666666544322222235555555444
Q ss_pred ---------------------cccccccCcc--ccCCCCCCCeEEEEccCCcChhcHHHhccCCCCCCEEEeecCCCCCc
Q 003890 648 ---------------------TLNPSSCTPD--ILGRLPNVQTLRISGDLSCYHSGVSKSLCELHKLECLKLVNERKPSR 704 (788)
Q Consensus 648 ---------------------~~~~~~~~~~--~l~~L~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~ 704 (788)
+.++....+. .+..+++|+.|+++++. .....+..+.++++|+.|+|+++....
T Consensus 210 ~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~--l~~~~~~~~~~l~~L~~L~L~~n~l~~- 286 (477)
T 2id5_A 210 WPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNP--ISTIEGSMLHELLRLQEIQLVGGQLAV- 286 (477)
T ss_dssp CTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSC--CCEECTTSCTTCTTCCEEECCSSCCSE-
T ss_pred CccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCc--CCccChhhccccccCCEEECCCCccce-
Confidence 4433322222 47789999999999987 444445678899999999999765441
Q ss_pred ccccccCCCccccccc---cccccccccC-cccCCCCCcceEEEeccccccc
Q 003890 705 MVLYEYQFPPTDMARI---LSQLIRQEFV-ESEMSLPLLQLLDLEESDEEDD 752 (788)
Q Consensus 705 ~~~~~~l~~~~~L~~L---~~~l~~~~lp-~~l~~l~~L~~L~L~~~~l~~~ 752 (788)
.....+..+++|+.| .|.+ ..+| ..+..+++|+.|+|++|++..+
T Consensus 287 -~~~~~~~~l~~L~~L~L~~N~l--~~~~~~~~~~l~~L~~L~l~~N~l~c~ 335 (477)
T 2id5_A 287 -VEPYAFRGLNYLRVLNVSGNQL--TTLEESVFHSVGNLETLILDSNPLACD 335 (477)
T ss_dssp -ECTTTBTTCTTCCEEECCSSCC--SCCCGGGBSCGGGCCEEECCSSCEECS
T ss_pred -ECHHHhcCcccCCEEECCCCcC--ceeCHhHcCCCcccCEEEccCCCccCc
Confidence 346678889999999 6677 5565 4567899999999999998864
No 16
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.83 E-value=3.7e-20 Score=221.41 Aligned_cols=245 Identities=16% Similarity=0.158 Sum_probs=169.4
Q ss_pred ccccceEEecCCCCchhhhhhhhhhhcCCccccEEEecCCCCC-CCCccccCCCCccEEEecCCCCc-ccChhhcCCCCC
Q 003890 519 DIYLQSFLNHSSESDHLALIDCENFCEKFKHLRILNLGSAVLV-QFPPGLENLFHLKYLKLNIPSLK-CLPSLLCTLLNL 596 (788)
Q Consensus 519 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~-~lp~~i~~L~~L~~L~L~~~~i~-~lp~~i~~L~~L 596 (788)
+++|+.|.+.++... ..+|..|..+++|++|++++|.+. .+|..++.+++|++|++++|.+. .+|..++.+++|
T Consensus 393 ~~~L~~L~L~~n~l~----~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L 468 (768)
T 3rgz_A 393 KNTLQELYLQNNGFT----GKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTL 468 (768)
T ss_dssp TCCCCEEECCSSEEE----EECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTC
T ss_pred cCCccEEECCCCccc----cccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCc
Confidence 455666666665542 123466677777777777777766 56677777777777777777766 567777777777
Q ss_pred cEEEccCCCCc-ccchhhhcccccceeeccCccCCCCCcCCcCcccccccccccccc--ccCccccCCCCCCCeEEEEcc
Q 003890 597 QTLEMPSSYVD-QSPEDIWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFISTLNPS--SCTPDILGRLPNVQTLRISGD 673 (788)
Q Consensus 597 ~~L~L~~~~l~-~lp~~l~~L~~L~~L~l~~~~~~~~i~~~~~~l~~L~~L~~~~~~--~~~~~~l~~L~~L~~L~l~~~ 673 (788)
++|++++|.+. .+|..+.++++|++|++++|.+...+|.+|+.+++|++|++.++. +..+..++.+++|+.|++++|
T Consensus 469 ~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N 548 (768)
T 3rgz_A 469 ETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTN 548 (768)
T ss_dssp CEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSS
T ss_pred eEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCC
Confidence 77777777555 456667777777777777777666666666777777777776543 345556777777777777766
Q ss_pred CCcChhc----------------------------------------------------------------------HHH
Q 003890 674 LSCYHSG----------------------------------------------------------------------VSK 683 (788)
Q Consensus 674 ~~~~~~~----------------------------------------------------------------------~~~ 683 (788)
. .... .+.
T Consensus 549 ~--l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~ 626 (768)
T 3rgz_A 549 L--FNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSP 626 (768)
T ss_dssp E--EESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCC
T ss_pred c--cCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCch
Confidence 4 1111 122
Q ss_pred hccCCCCCCEEEeecCCCCCcccccccCCCccccccc---cccccccccCcccCCCCCcceEEEeccccccccccCCccc
Q 003890 684 SLCELHKLECLKLVNERKPSRMVLYEYQFPPTDMARI---LSQLIRQEFVESEMSLPLLQLLDLEESDEEDDERSDILEI 760 (788)
Q Consensus 684 ~l~~l~~L~~L~L~~~~~~~~~~~~~~l~~~~~L~~L---~~~l~~~~lp~~l~~l~~L~~L~L~~~~l~~~~~~~~l~~ 760 (788)
.+..+++|+.|+|+++.... ..+..+..+++|+.| .|.+ ...+|..++.+++|+.|+|++|++.+. .+..
T Consensus 627 ~~~~l~~L~~LdLs~N~l~g--~ip~~l~~l~~L~~L~Ls~N~l-~g~ip~~l~~L~~L~~LdLs~N~l~g~----ip~~ 699 (768)
T 3rgz_A 627 TFDNNGSMMFLDMSYNMLSG--YIPKEIGSMPYLFILNLGHNDI-SGSIPDEVGDLRGLNILDLSSNKLDGR----IPQA 699 (768)
T ss_dssp SCSSSBCCCEEECCSSCCBS--CCCGGGGGCTTCCEEECCSSCC-CSCCCGGGGGCTTCCEEECCSSCCEEC----CCGG
T ss_pred hhhccccccEEECcCCcccc--cCCHHHhccccCCEEeCcCCcc-CCCCChHHhCCCCCCEEECCCCcccCc----CChH
Confidence 34456778888888654431 356667778888888 5666 346788888888889999998888875 5566
Q ss_pred ccccccCCeeEecccC
Q 003890 761 LQDINDFVHESEEAID 776 (788)
Q Consensus 761 l~~L~~L~~L~L~~~~ 776 (788)
++.+++|++|+|++|+
T Consensus 700 l~~l~~L~~L~ls~N~ 715 (768)
T 3rgz_A 700 MSALTMLTEIDLSNNN 715 (768)
T ss_dssp GGGCCCCSEEECCSSE
T ss_pred HhCCCCCCEEECcCCc
Confidence 8888888888888874
No 17
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.82 E-value=6.4e-20 Score=196.86 Aligned_cols=218 Identities=14% Similarity=0.088 Sum_probs=99.1
Q ss_pred ccccceEEecCCCCchhhhhhhhhhhcCCccccEEEecCCCCCCC-CccccCCCCccEEEecCCCCcccChhhcCCCCCc
Q 003890 519 DIYLQSFLNHSSESDHLALIDCENFCEKFKHLRILNLGSAVLVQF-PPGLENLFHLKYLKLNIPSLKCLPSLLCTLLNLQ 597 (788)
Q Consensus 519 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l-p~~i~~L~~L~~L~L~~~~i~~lp~~i~~L~~L~ 597 (788)
.++|+.|.+.++... ..++..|.++++|++|++++|.++.+ |..++++++|++|++++|.+..+|..+. .+|+
T Consensus 53 ~~~l~~L~l~~n~i~----~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~--~~L~ 126 (332)
T 2ft3_A 53 SPDTTLLDLQNNDIS----ELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLP--SSLV 126 (332)
T ss_dssp CTTCCEEECCSSCCC----EECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCSCCSSCC--TTCC
T ss_pred CCCCeEEECCCCcCC----ccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCccCcccc--ccCC
Confidence 345555555554431 12224455555555555555555533 4445555555555555555555554443 4555
Q ss_pred EEEccCCCCcccch-hhhcccccceeeccCccCCC--CCcCCcCccccccccccccccccCcc-ccCCCCCCCeEEEEcc
Q 003890 598 TLEMPSSYVDQSPE-DIWMMQKLMHLNFGSITLPA--PPKNYSSSLKNLIFISTLNPSSCTPD-ILGRLPNVQTLRISGD 673 (788)
Q Consensus 598 ~L~L~~~~l~~lp~-~l~~L~~L~~L~l~~~~~~~--~i~~~~~~l~~L~~L~~~~~~~~~~~-~l~~L~~L~~L~l~~~ 673 (788)
+|++++|.+..+|. .+.++++|++|++++|.+.. ..+..|+.+ +|+.|++.++....++ .+. ++|+.|+++++
T Consensus 127 ~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~l~~~~~--~~L~~L~l~~n 203 (332)
T 2ft3_A 127 ELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTGIPKDLP--ETLNELHLDHN 203 (332)
T ss_dssp EEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSSCCSSSC--SSCSCCBCCSS
T ss_pred EEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCccCcccc--CCCCEEECCCC
Confidence 55555555555543 25555555555555554321 112222444 4555544432221111 111 34445555444
Q ss_pred CCcChhcHHHhccCCCCCCEEEeecCCCCCcccccccCCCccccccc---cccccccccCcccCCCCCcceEEEeccccc
Q 003890 674 LSCYHSGVSKSLCELHKLECLKLVNERKPSRMVLYEYQFPPTDMARI---LSQLIRQEFVESEMSLPLLQLLDLEESDEE 750 (788)
Q Consensus 674 ~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~l~~~~~L~~L---~~~l~~~~lp~~l~~l~~L~~L~L~~~~l~ 750 (788)
. .....+..+..+++|+.|+|+++.... .....+..+++|++| .+.+ ..+|.++..+++|+.|+|++|++.
T Consensus 204 ~--i~~~~~~~l~~l~~L~~L~L~~N~l~~--~~~~~~~~l~~L~~L~L~~N~l--~~lp~~l~~l~~L~~L~l~~N~l~ 277 (332)
T 2ft3_A 204 K--IQAIELEDLLRYSKLYRLGLGHNQIRM--IENGSLSFLPTLRELHLDNNKL--SRVPAGLPDLKLLQVVYLHTNNIT 277 (332)
T ss_dssp C--CCCCCTTSSTTCTTCSCCBCCSSCCCC--CCTTGGGGCTTCCEEECCSSCC--CBCCTTGGGCTTCCEEECCSSCCC
T ss_pred c--CCccCHHHhcCCCCCCEEECCCCcCCc--CChhHhhCCCCCCEEECCCCcC--eecChhhhcCccCCEEECCCCCCC
Confidence 3 222222344444555555555332220 112233444445444 3344 344444444555555555555544
Q ss_pred c
Q 003890 751 D 751 (788)
Q Consensus 751 ~ 751 (788)
.
T Consensus 278 ~ 278 (332)
T 2ft3_A 278 K 278 (332)
T ss_dssp B
T ss_pred c
Confidence 3
No 18
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.82 E-value=1.2e-19 Score=203.56 Aligned_cols=240 Identities=16% Similarity=0.110 Sum_probs=164.8
Q ss_pred eEEEeecCccccccccccccccceEEecCCCCchhhhhhhhhhhcCCccccEEEecCCCCCCCC-ccccCCCCccEEEec
Q 003890 501 KWCYIMKDLIEFFSLEHSDIYLQSFLNHSSESDHLALIDCENFCEKFKHLRILNLGSAVLVQFP-PGLENLFHLKYLKLN 579 (788)
Q Consensus 501 r~Ls~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp-~~i~~L~~L~~L~L~ 579 (788)
+.+...+......+..- .++++.|.+.++... .+.+..|.++++|++|+|++|.++.++ ..|.++.+|++|+|+
T Consensus 57 ~~v~c~~~~l~~iP~~~-~~~l~~L~L~~n~i~----~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~ 131 (452)
T 3zyi_A 57 SKVVCTRRGLSEVPQGI-PSNTRYLNLMENNIQ----MIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELF 131 (452)
T ss_dssp CEEECCSSCCSSCCSCC-CTTCSEEECCSSCCC----EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred cEEEECCCCcCccCCCC-CCCccEEECcCCcCc----eECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECC
Confidence 34444444433333333 568888888887752 233477888999999999999888554 678889999999999
Q ss_pred CCCCcccChh-hcCCCCCcEEEccCCCCcccch-hhhcccccceeeccCccCCCCCc-CCcCccccccccccccccccCc
Q 003890 580 IPSLKCLPSL-LCTLLNLQTLEMPSSYVDQSPE-DIWMMQKLMHLNFGSITLPAPPK-NYSSSLKNLIFISTLNPSSCTP 656 (788)
Q Consensus 580 ~~~i~~lp~~-i~~L~~L~~L~L~~~~l~~lp~-~l~~L~~L~~L~l~~~~~~~~i~-~~~~~l~~L~~L~~~~~~~~~~ 656 (788)
+|.+..+|.. +.++++|++|++++|.+..+|. .+.++++|++|+++++.....++ ..|..+++|+.|++.++....+
T Consensus 132 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~ 211 (452)
T 3zyi_A 132 DNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM 211 (452)
T ss_dssp SSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC
T ss_pred CCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc
Confidence 9988888764 7888999999999998888876 58889999999998754333332 2357888888888887666666
Q ss_pred cccCCCCCCCeEEEEccCCcChhcHHHhccCCCCCCEEEeecCCCCCcccccccCCCccccccccccccccccCcccCCC
Q 003890 657 DILGRLPNVQTLRISGDLSCYHSGVSKSLCELHKLECLKLVNERKPSRMVLYEYQFPPTDMARILSQLIRQEFVESEMSL 736 (788)
Q Consensus 657 ~~l~~L~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~l~~~~~L~~L~~~l~~~~lp~~l~~l 736 (788)
+.+..+++|+.|++++|. .....+..+.++++|+.|+|+++... ...|..+..+
T Consensus 212 ~~~~~l~~L~~L~Ls~N~--l~~~~~~~~~~l~~L~~L~L~~n~l~------------------------~~~~~~~~~l 265 (452)
T 3zyi_A 212 PNLTPLVGLEELEMSGNH--FPEIRPGSFHGLSSLKKLWVMNSQVS------------------------LIERNAFDGL 265 (452)
T ss_dssp CCCTTCTTCCEEECTTSC--CSEECGGGGTTCTTCCEEECTTSCCC------------------------EECTTTTTTC
T ss_pred ccccccccccEEECcCCc--CcccCcccccCccCCCEEEeCCCcCc------------------------eECHHHhcCC
Confidence 677888888888888876 44445667788888888888754433 1123344455
Q ss_pred CCcceEEEeccccccccccCCcccccccccCCeeEeccc
Q 003890 737 PLLQLLDLEESDEEDDERSDILEILQDINDFVHESEEAI 775 (788)
Q Consensus 737 ~~L~~L~L~~~~l~~~~~~~~l~~l~~L~~L~~L~L~~~ 775 (788)
++|+.|+|++|++... +...+..+++|+.|+|+++
T Consensus 266 ~~L~~L~L~~N~l~~~----~~~~~~~l~~L~~L~L~~N 300 (452)
T 3zyi_A 266 ASLVELNLAHNNLSSL----PHDLFTPLRYLVELHLHHN 300 (452)
T ss_dssp TTCCEEECCSSCCSCC----CTTSSTTCTTCCEEECCSS
T ss_pred CCCCEEECCCCcCCcc----ChHHhccccCCCEEEccCC
Confidence 5555555555555543 2333455555555555554
No 19
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.82 E-value=1.1e-19 Score=202.99 Aligned_cols=192 Identities=17% Similarity=0.169 Sum_probs=139.8
Q ss_pred EEEeecCccccccccccccccceEEecCCCCchhhhhhhhhhhcCCccccEEEecCCCCCCCC-ccccCCCCccEEEecC
Q 003890 502 WCYIMKDLIEFFSLEHSDIYLQSFLNHSSESDHLALIDCENFCEKFKHLRILNLGSAVLVQFP-PGLENLFHLKYLKLNI 580 (788)
Q Consensus 502 ~Ls~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp-~~i~~L~~L~~L~L~~ 580 (788)
.+...+......|..- .++++.|.+.++... .+.+..|.++++|++|+|++|.+..++ ..|.++.+|++|+|++
T Consensus 47 ~v~c~~~~l~~iP~~~-~~~l~~L~L~~n~i~----~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~ 121 (440)
T 3zyj_A 47 KVICVRKNLREVPDGI-STNTRLLNLHENQIQ----IIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFD 121 (440)
T ss_dssp EEECCSCCCSSCCSCC-CTTCSEEECCSCCCC----EECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCS
T ss_pred EEEeCCCCcCcCCCCC-CCCCcEEEccCCcCC----eeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCC
Confidence 4444444444444333 567888888887752 233477888889999999999888655 5688888999999998
Q ss_pred CCCcccCh-hhcCCCCCcEEEccCCCCcccch-hhhcccccceeeccCccCCCCCc-CCcCccccccccccccccccCcc
Q 003890 581 PSLKCLPS-LLCTLLNLQTLEMPSSYVDQSPE-DIWMMQKLMHLNFGSITLPAPPK-NYSSSLKNLIFISTLNPSSCTPD 657 (788)
Q Consensus 581 ~~i~~lp~-~i~~L~~L~~L~L~~~~l~~lp~-~l~~L~~L~~L~l~~~~~~~~i~-~~~~~l~~L~~L~~~~~~~~~~~ 657 (788)
|.+..+|. .+.++++|++|++++|.+..+|. .+.++++|++|+++++.....++ ..|.++++|++|++.++....++
T Consensus 122 n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~ 201 (440)
T 3zyj_A 122 NRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIP 201 (440)
T ss_dssp SCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCC
T ss_pred CcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcccc
Confidence 88888876 57888899999999888888876 58888899999888754333332 23577888888888776666666
Q ss_pred ccCCCCCCCeEEEEccCCcChhcHHHhccCCCCCCEEEeecCC
Q 003890 658 ILGRLPNVQTLRISGDLSCYHSGVSKSLCELHKLECLKLVNER 700 (788)
Q Consensus 658 ~l~~L~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~ 700 (788)
.+..+++|+.|++++|. .....+..+.++++|+.|+|+++.
T Consensus 202 ~~~~l~~L~~L~Ls~N~--l~~~~~~~~~~l~~L~~L~L~~n~ 242 (440)
T 3zyj_A 202 NLTPLIKLDELDLSGNH--LSAIRPGSFQGLMHLQKLWMIQSQ 242 (440)
T ss_dssp CCTTCSSCCEEECTTSC--CCEECTTTTTTCTTCCEEECTTCC
T ss_pred ccCCCcccCEEECCCCc--cCccChhhhccCccCCEEECCCCc
Confidence 77788888888888876 444446677778888888887543
No 20
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.82 E-value=3.9e-20 Score=196.15 Aligned_cols=176 Identities=19% Similarity=0.174 Sum_probs=114.2
Q ss_pred ccccceEEecCCCCchhhhhhhhhhhcCCccccEEEecCCCCCCC---CccccCCCCccEEEecCCCCcccChhhcCCCC
Q 003890 519 DIYLQSFLNHSSESDHLALIDCENFCEKFKHLRILNLGSAVLVQF---PPGLENLFHLKYLKLNIPSLKCLPSLLCTLLN 595 (788)
Q Consensus 519 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l---p~~i~~L~~L~~L~L~~~~i~~lp~~i~~L~~ 595 (788)
.++|+.|.+.++... .+++..|.++++|++|++++|.++.+ |..+..+.+|++|++++|.+..+|..+..+++
T Consensus 27 ~~~l~~L~L~~n~l~----~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~ 102 (306)
T 2z66_A 27 PSSATRLELESNKLQ----SLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQ 102 (306)
T ss_dssp CTTCCEEECCSSCCC----CCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEEEEETCTT
T ss_pred CCCCCEEECCCCccC----ccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccccChhhcCCCCC
Confidence 457777777776642 12335567777777777777776643 45566677777777777777777777777777
Q ss_pred CcEEEccCCCCcccch--hhhcccccceeeccCccCCCCCcCCcCcccccccccccccccc---CccccCCCCCCCeEEE
Q 003890 596 LQTLEMPSSYVDQSPE--DIWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFISTLNPSSC---TPDILGRLPNVQTLRI 670 (788)
Q Consensus 596 L~~L~L~~~~l~~lp~--~l~~L~~L~~L~l~~~~~~~~i~~~~~~l~~L~~L~~~~~~~~---~~~~l~~L~~L~~L~l 670 (788)
|++|++++|.+..+|. .+.++++|++|++++|.+....+..|+.+++|++|++.++... .+..+..+++|+.|++
T Consensus 103 L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L 182 (306)
T 2z66_A 103 LEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDL 182 (306)
T ss_dssp CCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEEC
T ss_pred CCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEEC
Confidence 7777777776666653 5677777777777777554444444466677777766654322 3445666677777777
Q ss_pred EccCCcChhcHHHhccCCCCCCEEEeecCC
Q 003890 671 SGDLSCYHSGVSKSLCELHKLECLKLVNER 700 (788)
Q Consensus 671 ~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~ 700 (788)
+++. .....+..+..+++|+.|+|+++.
T Consensus 183 s~n~--l~~~~~~~~~~l~~L~~L~L~~N~ 210 (306)
T 2z66_A 183 SQCQ--LEQLSPTAFNSLSSLQVLNMSHNN 210 (306)
T ss_dssp TTSC--CCEECTTTTTTCTTCCEEECTTSC
T ss_pred CCCC--cCCcCHHHhcCCCCCCEEECCCCc
Confidence 7665 333334556666677777776543
No 21
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.82 E-value=3.4e-20 Score=198.42 Aligned_cols=221 Identities=15% Similarity=0.140 Sum_probs=143.5
Q ss_pred ccccceEEecCCCCchhhhhhhhhhhcCCccccEEEecCCCCCCCCccccCCCCccEEEecCCCCcccChhhcCCCCCcE
Q 003890 519 DIYLQSFLNHSSESDHLALIDCENFCEKFKHLRILNLGSAVLVQFPPGLENLFHLKYLKLNIPSLKCLPSLLCTLLNLQT 598 (788)
Q Consensus 519 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~lp~~i~~L~~L~~ 598 (788)
.++++.|.+.++... .+|..+..+++|++|+|++|.++.+|..++++.+|++|++++|.+..+|..++++++|++
T Consensus 80 ~~~l~~L~L~~n~l~-----~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~ 154 (328)
T 4fcg_A 80 QPGRVALELRSVPLP-----QFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRE 154 (328)
T ss_dssp STTCCEEEEESSCCS-----SCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCE
T ss_pred ccceeEEEccCCCch-----hcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCE
Confidence 455666666665542 123445556777777777777666676677777777777777777667767777777777
Q ss_pred EEccCC-CCcccchhhhc---------ccccceeeccCccCCCCCcCCcCccccccccccccccc-cCccccCCCCCCCe
Q 003890 599 LEMPSS-YVDQSPEDIWM---------MQKLMHLNFGSITLPAPPKNYSSSLKNLIFISTLNPSS-CTPDILGRLPNVQT 667 (788)
Q Consensus 599 L~L~~~-~l~~lp~~l~~---------L~~L~~L~l~~~~~~~~i~~~~~~l~~L~~L~~~~~~~-~~~~~l~~L~~L~~ 667 (788)
|++++| .+..+|..+.. +++|++|++++|.+. .+|..++.+++|++|++.++.. ..+..++.+++|+.
T Consensus 155 L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~ 233 (328)
T 4fcg_A 155 LSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEE 233 (328)
T ss_dssp EEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCE
T ss_pred EECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCcCchhhccCCCCCE
Confidence 777765 45556655443 677777777766554 4555556677777776665432 23345666777777
Q ss_pred EEEEccCCcChhcHHHhccCCCCCCEEEeecCCCCCcccccccCCCccccccc---cccccccccCcccCCCCCcceEEE
Q 003890 668 LRISGDLSCYHSGVSKSLCELHKLECLKLVNERKPSRMVLYEYQFPPTDMARI---LSQLIRQEFVESEMSLPLLQLLDL 744 (788)
Q Consensus 668 L~l~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~l~~~~~L~~L---~~~l~~~~lp~~l~~l~~L~~L~L 744 (788)
|++++|. .....+..+..+++|+.|+|+++.... ..+..+..+++|++| .|++ ...+|.+++.+++|+.+++
T Consensus 234 L~Ls~n~--~~~~~p~~~~~l~~L~~L~L~~n~~~~--~~p~~~~~l~~L~~L~L~~n~~-~~~iP~~l~~L~~L~~l~l 308 (328)
T 4fcg_A 234 LDLRGCT--ALRNYPPIFGGRAPLKRLILKDCSNLL--TLPLDIHRLTQLEKLDLRGCVN-LSRLPSLIAQLPANCIILV 308 (328)
T ss_dssp EECTTCT--TCCBCCCCTTCCCCCCEEECTTCTTCC--BCCTTGGGCTTCCEEECTTCTT-CCCCCGGGGGSCTTCEEEC
T ss_pred EECcCCc--chhhhHHHhcCCCCCCEEECCCCCchh--hcchhhhcCCCCCEEeCCCCCc-hhhccHHHhhccCceEEeC
Confidence 7777765 445556667777777777777544331 344456666777777 3233 2678999999999999999
Q ss_pred eccccc
Q 003890 745 EESDEE 750 (788)
Q Consensus 745 ~~~~l~ 750 (788)
..+.+.
T Consensus 309 ~~~~~~ 314 (328)
T 4fcg_A 309 PPHLQA 314 (328)
T ss_dssp CGGGSC
T ss_pred CHHHHH
Confidence 877655
No 22
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.81 E-value=5.4e-20 Score=219.95 Aligned_cols=267 Identities=15% Similarity=0.122 Sum_probs=194.0
Q ss_pred CCceeEEEeecCccc-ccc--ccccccccceEEecCCCCchhhhhhhhhhhcCCccccEEEecCCCCC-CCCccccCCCC
Q 003890 497 PANVKWCYIMKDLIE-FFS--LEHSDIYLQSFLNHSSESDHLALIDCENFCEKFKHLRILNLGSAVLV-QFPPGLENLFH 572 (788)
Q Consensus 497 ~~~~r~Ls~~~~~~~-~~~--~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~-~lp~~i~~L~~ 572 (788)
..+++.|.+.++... ..+ ... +++|+.|.+.++.... .+|..|..+++|+.|++++|.+. .+|..++.+++
T Consensus 393 ~~~L~~L~L~~n~l~~~~p~~l~~-l~~L~~L~Ls~N~l~~----~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~ 467 (768)
T 3rgz_A 393 KNTLQELYLQNNGFTGKIPPTLSN-CSELVSLHLSFNYLSG----TIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKT 467 (768)
T ss_dssp TCCCCEEECCSSEEEEECCGGGGG-CTTCCEEECCSSEEES----CCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTT
T ss_pred cCCccEEECCCCccccccCHHHhc-CCCCCEEECcCCcccC----cccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCC
Confidence 446777777766544 222 444 7778888887765422 23466777777777777777766 66777777777
Q ss_pred ccEEEecCCCCc-ccChhhcCCCCCcEEEccCCCCc-ccchhhhcccccceeeccCccCCCCCcCCcCcccccccccccc
Q 003890 573 LKYLKLNIPSLK-CLPSLLCTLLNLQTLEMPSSYVD-QSPEDIWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFISTLN 650 (788)
Q Consensus 573 L~~L~L~~~~i~-~lp~~i~~L~~L~~L~L~~~~l~-~lp~~l~~L~~L~~L~l~~~~~~~~i~~~~~~l~~L~~L~~~~ 650 (788)
|++|++++|.+. .+|..++++++|++|++++|.+. .+|..++++++|++|++++|.+...+|..++.+++|+.|++.+
T Consensus 468 L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~ 547 (768)
T 3rgz_A 468 LETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNT 547 (768)
T ss_dssp CCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCS
T ss_pred ceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCC
Confidence 777777777766 56777777777777777777555 5666777777777777777766555555557777777776653
Q ss_pred cc------------------------------------------------------------------------ccCccc
Q 003890 651 PS------------------------------------------------------------------------SCTPDI 658 (788)
Q Consensus 651 ~~------------------------------------------------------------------------~~~~~~ 658 (788)
+. +..+..
T Consensus 548 N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~ 627 (768)
T 3rgz_A 548 NLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPT 627 (768)
T ss_dssp SEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCS
T ss_pred CccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchh
Confidence 21 111224
Q ss_pred cCCCCCCCeEEEEccCCcChhcHHHhccCCCCCCEEEeecCCCCCcccccccCCCccccccc---cccccccccCcccCC
Q 003890 659 LGRLPNVQTLRISGDLSCYHSGVSKSLCELHKLECLKLVNERKPSRMVLYEYQFPPTDMARI---LSQLIRQEFVESEMS 735 (788)
Q Consensus 659 l~~L~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~l~~~~~L~~L---~~~l~~~~lp~~l~~ 735 (788)
++.+++|+.|++++|. .....|..++++++|+.|+|+++.... ..++.+..+++|+.| .|++ ...+|..++.
T Consensus 628 ~~~l~~L~~LdLs~N~--l~g~ip~~l~~l~~L~~L~Ls~N~l~g--~ip~~l~~L~~L~~LdLs~N~l-~g~ip~~l~~ 702 (768)
T 3rgz_A 628 FDNNGSMMFLDMSYNM--LSGYIPKEIGSMPYLFILNLGHNDISG--SIPDEVGDLRGLNILDLSSNKL-DGRIPQAMSA 702 (768)
T ss_dssp CSSSBCCCEEECCSSC--CBSCCCGGGGGCTTCCEEECCSSCCCS--CCCGGGGGCTTCCEEECCSSCC-EECCCGGGGG
T ss_pred hhccccccEEECcCCc--ccccCCHHHhccccCCEEeCcCCccCC--CCChHHhCCCCCCEEECCCCcc-cCcCChHHhC
Confidence 5667889999999997 666788999999999999999765542 467788889999999 6777 4578999999
Q ss_pred CCCcceEEEeccccccccccCCcccccccccCCeeEecccCch
Q 003890 736 LPLLQLLDLEESDEEDDERSDILEILQDINDFVHESEEAIDTF 778 (788)
Q Consensus 736 l~~L~~L~L~~~~l~~~~~~~~l~~l~~L~~L~~L~L~~~~~l 778 (788)
+++|++|+|++|++.+ .+|..+.+.++..+.+.||+.+
T Consensus 703 l~~L~~L~ls~N~l~g-----~iP~~~~~~~~~~~~~~gN~~L 740 (768)
T 3rgz_A 703 LTMLTEIDLSNNNLSG-----PIPEMGQFETFPPAKFLNNPGL 740 (768)
T ss_dssp CCCCSEEECCSSEEEE-----ECCSSSSGGGSCGGGGCSCTEE
T ss_pred CCCCCEEECcCCcccc-----cCCCchhhccCCHHHhcCCchh
Confidence 9999999999999987 4777677777777777777644
No 23
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.81 E-value=8.9e-20 Score=200.39 Aligned_cols=243 Identities=12% Similarity=0.121 Sum_probs=182.4
Q ss_pred ccccccccceEEecCCCCchhhhhhhhhhhcCCccccEEEecCCCCCCCC-ccccCCCCccEEEecCCCCcccCh-hhcC
Q 003890 515 LEHSDIYLQSFLNHSSESDHLALIDCENFCEKFKHLRILNLGSAVLVQFP-PGLENLFHLKYLKLNIPSLKCLPS-LLCT 592 (788)
Q Consensus 515 ~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp-~~i~~L~~L~~L~L~~~~i~~lp~-~i~~ 592 (788)
... +++++.|.+.++.. ..+++..|..+++|++|++++|.+..+| ..+..+.+|++|++++|.+..+|+ .+++
T Consensus 41 ~~~-l~~l~~l~l~~~~l----~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 115 (390)
T 3o6n_A 41 DIT-LNNQKIVTFKNSTM----RKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQN 115 (390)
T ss_dssp SGG-GCCCSEEEEESCEE----SEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred ccc-cCCceEEEecCCch----hhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcC
Confidence 344 78999999998775 2234477899999999999999999766 489999999999999999998854 5899
Q ss_pred CCCCcEEEccCCCCcccchh-hhcccccceeeccCccCCCCCcCCcCccccccccccccccccCccccCCCC--------
Q 003890 593 LLNLQTLEMPSSYVDQSPED-IWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFISTLNPSSCTPDILGRLP-------- 663 (788)
Q Consensus 593 L~~L~~L~L~~~~l~~lp~~-l~~L~~L~~L~l~~~~~~~~i~~~~~~l~~L~~L~~~~~~~~~~~~l~~L~-------- 663 (788)
+++|++|++++|.+..+|.. +.++++|++|++++|.+....+..|+.+++|++|++.++..... .++.++
T Consensus 116 l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~l~~L~~L~l~ 194 (390)
T 3o6n_A 116 VPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV-DLSLIPSLFHANVS 194 (390)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC-CGGGCTTCSEEECC
T ss_pred CCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc-ccccccccceeecc
Confidence 99999999999999999986 58999999999999977655455569999999999886433221 122223
Q ss_pred --------------------------------CCCeEEEEccCCcChhcHHHhccCCCCCCEEEeecCCCCCcccccccC
Q 003890 664 --------------------------------NVQTLRISGDLSCYHSGVSKSLCELHKLECLKLVNERKPSRMVLYEYQ 711 (788)
Q Consensus 664 --------------------------------~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~l 711 (788)
+|+.|+++++. ... ...+..+++|+.|+|+++.... ..+..+
T Consensus 195 ~n~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~---l~~-~~~l~~l~~L~~L~Ls~n~l~~--~~~~~~ 268 (390)
T 3o6n_A 195 YNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNN---LTD-TAWLLNYPGLVEVDLSYNELEK--IMYHPF 268 (390)
T ss_dssp SSCCSEEECCSSCSEEECCSSCCCEEECCCCSSCCEEECCSSC---CCC-CGGGGGCTTCSEEECCSSCCCE--EESGGG
T ss_pred cccccccCCCCcceEEECCCCeeeeccccccccccEEECCCCC---Ccc-cHHHcCCCCccEEECCCCcCCC--cChhHc
Confidence 33444444443 111 1456677788888888654431 235667
Q ss_pred CCccccccc---cccccccccCcccCCCCCcceEEEeccccccccccCCcccccccccCCeeEecccC
Q 003890 712 FPPTDMARI---LSQLIRQEFVESEMSLPLLQLLDLEESDEEDDERSDILEILQDINDFVHESEEAID 776 (788)
Q Consensus 712 ~~~~~L~~L---~~~l~~~~lp~~l~~l~~L~~L~L~~~~l~~~~~~~~l~~l~~L~~L~~L~L~~~~ 776 (788)
..+++|++| .+.+ ..+|..+..+++|+.|+|++|++.. ..+.++.+++|++|+|++|.
T Consensus 269 ~~l~~L~~L~L~~n~l--~~~~~~~~~l~~L~~L~L~~n~l~~-----~~~~~~~l~~L~~L~L~~N~ 329 (390)
T 3o6n_A 269 VKMQRLERLYISNNRL--VALNLYGQPIPTLKVLDLSHNHLLH-----VERNQPQFDRLENLYLDHNS 329 (390)
T ss_dssp TTCSSCCEEECCSSCC--CEEECSSSCCTTCCEEECCSSCCCC-----CGGGHHHHTTCSEEECCSSC
T ss_pred cccccCCEEECCCCcC--cccCcccCCCCCCCEEECCCCccee-----cCccccccCcCCEEECCCCc
Confidence 778888888 5666 6677677778888888888888875 34557788888888888875
No 24
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.81 E-value=1.2e-19 Score=211.60 Aligned_cols=129 Identities=17% Similarity=0.202 Sum_probs=101.3
Q ss_pred CCCceeEEEeecCcccccc---ccccccccceEEecCCCCchhhhhhhhhhhcCCccccEEEecCCCCCCC-CccccCCC
Q 003890 496 PPANVKWCYIMKDLIEFFS---LEHSDIYLQSFLNHSSESDHLALIDCENFCEKFKHLRILNLGSAVLVQF-PPGLENLF 571 (788)
Q Consensus 496 ~~~~~r~Ls~~~~~~~~~~---~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l-p~~i~~L~ 571 (788)
.+.++++|.+.++.....+ +.. +++|+.|.+.++... .+.+..|.++++|++|+|++|.++.+ |..|+++.
T Consensus 30 ~~~~l~~L~Ls~n~l~~~~~~~~~~-l~~L~~L~Ls~n~l~----~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~ 104 (606)
T 3vq2_A 30 IPSSTKNIDLSFNPLKILKSYSFSN-FSELQWLDLSRCEIE----TIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLT 104 (606)
T ss_dssp SCTTCCEEECTTSCCCEECTTTTTT-CTTCCEEECTTCCCC----EECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCT
T ss_pred CCCCcCEEECCCCCcCEeChhhccC-CccCcEEeCCCCccc----ccCHHHhhchhhcCEeECCCCcccccChhhcCCcc
Confidence 4577888998887665443 455 888999998887652 23457788888999999998888866 77888888
Q ss_pred CccEEEecCCCCcccC-hhhcCCCCCcEEEccCCCCc--ccchhhhcccccceeeccCccC
Q 003890 572 HLKYLKLNIPSLKCLP-SLLCTLLNLQTLEMPSSYVD--QSPEDIWMMQKLMHLNFGSITL 629 (788)
Q Consensus 572 ~L~~L~L~~~~i~~lp-~~i~~L~~L~~L~L~~~~l~--~lp~~l~~L~~L~~L~l~~~~~ 629 (788)
+|++|++++|.+..+| ..++++++|++|++++|.+. .+|..++++++|++|++++|.+
T Consensus 105 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l 165 (606)
T 3vq2_A 105 SLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYI 165 (606)
T ss_dssp TCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCC
T ss_pred cCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcc
Confidence 9999999888888776 56888888888888888776 4678888888888888887654
No 25
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.81 E-value=2.2e-19 Score=213.85 Aligned_cols=262 Identities=14% Similarity=0.099 Sum_probs=175.1
Q ss_pred CCceeEEEeecCc-ccccc--ccccccccceEEecCCC-Cch-hhhhhh---hhhhcCCccccEEEecCCCCCCCCc--c
Q 003890 497 PANVKWCYIMKDL-IEFFS--LEHSDIYLQSFLNHSSE-SDH-LALIDC---ENFCEKFKHLRILNLGSAVLVQFPP--G 566 (788)
Q Consensus 497 ~~~~r~Ls~~~~~-~~~~~--~~~~~~~Lr~L~l~~~~-~~~-~~~~~~---~~~~~~l~~L~~L~L~~~~l~~lp~--~ 566 (788)
..++++|.+..+. ....+ ... +++|+.|.+.++. ... .++..+ +..+..+++|+.|+|++|.+..+|. .
T Consensus 490 L~~L~~L~Ls~N~l~~~iP~~l~~-L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~ 568 (876)
T 4ecn_A 490 LKDLTDVELYNCPNMTQLPDFLYD-LPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASAS 568 (876)
T ss_dssp CTTCCEEEEESCTTCCSCCGGGGG-CSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHH
T ss_pred CCCCCEEECcCCCCCccChHHHhC-CCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhh
Confidence 4678999999775 33333 455 8999999999987 543 332111 1133455699999999999999998 8
Q ss_pred ccCCCCccEEEecCCCCcccChhhcCCCCCcEEEccCCCCcccchhhhcccc-cceeeccCccCCCCCcCCcCcccc--c
Q 003890 567 LENLFHLKYLKLNIPSLKCLPSLLCTLLNLQTLEMPSSYVDQSPEDIWMMQK-LMHLNFGSITLPAPPKNYSSSLKN--L 643 (788)
Q Consensus 567 i~~L~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~lp~~l~~L~~-L~~L~l~~~~~~~~i~~~~~~l~~--L 643 (788)
++++++|++|++++|.+..+| .++++++|++|++++|.+..+|..+.++++ |++|++++|.+. .+|..++.+.. |
T Consensus 569 l~~L~~L~~L~Ls~N~l~~lp-~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L 646 (876)
T 4ecn_A 569 LQKMVKLGLLDCVHNKVRHLE-AFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVM 646 (876)
T ss_dssp HTTCTTCCEEECTTSCCCBCC-CCCTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCE
T ss_pred hhcCCCCCEEECCCCCcccch-hhcCCCcceEEECcCCccccchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCC
Confidence 999999999999999999999 899999999999999988899988999999 999999998776 66666676654 8
Q ss_pred ccccccccccc-Ccc----ccC--CCCCCCeEEEEccCCcChhcHHHhc-cCCCCCCEEEeecCCCCCcccccccCC---
Q 003890 644 IFISTLNPSSC-TPD----ILG--RLPNVQTLRISGDLSCYHSGVSKSL-CELHKLECLKLVNERKPSRMVLYEYQF--- 712 (788)
Q Consensus 644 ~~L~~~~~~~~-~~~----~l~--~L~~L~~L~l~~~~~~~~~~~~~~l-~~l~~L~~L~L~~~~~~~~~~~~~~l~--- 712 (788)
+.|++.++... .++ .++ .+++|+.|++++|. ...++..+ ..+++|+.|+|+++... ..+..+.
T Consensus 647 ~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~---L~~lp~~~~~~l~~L~~L~Ls~N~L~---~ip~~~~~~~ 720 (876)
T 4ecn_A 647 GSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNE---IQKFPTELFATGSPISTIILSNNLMT---SIPENSLKPK 720 (876)
T ss_dssp EEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSC---CCSCCHHHHHTTCCCSEEECCSCCCS---CCCTTSSSCT
T ss_pred CEEECcCCcCCCccccchhhhccccCCCcCEEEccCCc---CCccCHHHHccCCCCCEEECCCCcCC---ccChHHhccc
Confidence 88887754321 111 222 33467777777765 22344333 35666777777654322 1111111
Q ss_pred -----Cccccccc---cccccccccCcccC--CCCCcceEEEeccccccccccCCcccccccccCCeeEecc
Q 003890 713 -----PPTDMARI---LSQLIRQEFVESEM--SLPLLQLLDLEESDEEDDERSDILEILQDINDFVHESEEA 774 (788)
Q Consensus 713 -----~~~~L~~L---~~~l~~~~lp~~l~--~l~~L~~L~L~~~~l~~~~~~~~l~~l~~L~~L~~L~L~~ 774 (788)
.+++|+.| .|.+ ..+|..+. .+++|+.|+|++|.+.. .+..++.+++|+.|+|++
T Consensus 721 ~~~l~nl~~L~~L~Ls~N~L--~~lp~~l~~~~l~~L~~L~Ls~N~L~~-----lp~~l~~L~~L~~L~Ls~ 785 (876)
T 4ecn_A 721 DGNYKNTYLLTTIDLRFNKL--TSLSDDFRATTLPYLSNMDVSYNCFSS-----FPTQPLNSSQLKAFGIRH 785 (876)
T ss_dssp TSCCTTGGGCCEEECCSSCC--CCCCGGGSTTTCTTCCEEECCSSCCSS-----CCCGGGGCTTCCEEECCC
T ss_pred cccccccCCccEEECCCCCC--ccchHHhhhccCCCcCEEEeCCCCCCc-----cchhhhcCCCCCEEECCC
Confidence 12255555 4455 45555554 56666666666666553 123445555555555554
No 26
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.81 E-value=9.2e-20 Score=217.13 Aligned_cols=158 Identities=15% Similarity=0.210 Sum_probs=125.0
Q ss_pred hhhhhcCCccccEEEecCCCCCC------------------CCcccc--CCCCccEEEecCCCCc-ccChhhcCCCCCcE
Q 003890 540 CENFCEKFKHLRILNLGSAVLVQ------------------FPPGLE--NLFHLKYLKLNIPSLK-CLPSLLCTLLNLQT 598 (788)
Q Consensus 540 ~~~~~~~l~~L~~L~L~~~~l~~------------------lp~~i~--~L~~L~~L~L~~~~i~-~lp~~i~~L~~L~~ 598 (788)
+|..|.++++|++|+|++|.++. +|..++ ++++|++|+|++|.+. .+|..+++|++|++
T Consensus 440 IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~ 519 (876)
T 4ecn_A 440 ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQS 519 (876)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCE
T ss_pred hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCE
Confidence 55678888899999999998887 888887 8889999999888744 77888888899999
Q ss_pred EEccCCC-Ccc--cchhhhccc-------ccceeeccCccCCCCCcC--CcCccccccccccccccccCccccCCCCCCC
Q 003890 599 LEMPSSY-VDQ--SPEDIWMMQ-------KLMHLNFGSITLPAPPKN--YSSSLKNLIFISTLNPSSCTPDILGRLPNVQ 666 (788)
Q Consensus 599 L~L~~~~-l~~--lp~~l~~L~-------~L~~L~l~~~~~~~~i~~--~~~~l~~L~~L~~~~~~~~~~~~l~~L~~L~ 666 (788)
|++++|. +.. +|..+++++ +|++|++++|.+. .+|. .|+++++|+.|++.++....++.++.+++|+
T Consensus 520 L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~~lp~~~~L~~L~ 598 (876)
T 4ecn_A 520 LNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVRHLEAFGTNVKLT 598 (876)
T ss_dssp EECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCCBCCCCCTTSEES
T ss_pred EECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcccchhhcCCCcce
Confidence 9998886 764 788777776 8888888888776 6666 6688888888888865544555788888888
Q ss_pred eEEEEccCCcChhcHHHhccCCCC-CCEEEeecCCC
Q 003890 667 TLRISGDLSCYHSGVSKSLCELHK-LECLKLVNERK 701 (788)
Q Consensus 667 ~L~l~~~~~~~~~~~~~~l~~l~~-L~~L~L~~~~~ 701 (788)
.|++++|. ...++..+.++++ |+.|+|+++..
T Consensus 599 ~L~Ls~N~---l~~lp~~l~~l~~~L~~L~Ls~N~L 631 (876)
T 4ecn_A 599 DLKLDYNQ---IEEIPEDFCAFTDQVEGLGFSHNKL 631 (876)
T ss_dssp EEECCSSC---CSCCCTTSCEECTTCCEEECCSSCC
T ss_pred EEECcCCc---cccchHHHhhccccCCEEECcCCCC
Confidence 88888876 2366777777877 88888886543
No 27
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.81 E-value=1e-19 Score=211.21 Aligned_cols=244 Identities=12% Similarity=0.120 Sum_probs=187.3
Q ss_pred ccccccccceEEecCCCCchhhhhhhhhhhcCCccccEEEecCCCCCCCC-ccccCCCCccEEEecCCCCcccCh-hhcC
Q 003890 515 LEHSDIYLQSFLNHSSESDHLALIDCENFCEKFKHLRILNLGSAVLVQFP-PGLENLFHLKYLKLNIPSLKCLPS-LLCT 592 (788)
Q Consensus 515 ~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp-~~i~~L~~L~~L~L~~~~i~~lp~-~i~~ 592 (788)
... +++++.+.+.++.. ..+++..|..+++|++|+|++|.+..+| ..|+.+.+|++|+|++|.+..+|+ .+++
T Consensus 47 ~l~-l~~l~~l~l~~~~l----~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 121 (597)
T 3oja_B 47 DIT-LNNQKIVTFKNSTM----RKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQN 121 (597)
T ss_dssp SGG-GCCCSEEEESSCEE----SEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred ccc-CCCceEEEeeCCCC----CCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcC
Confidence 344 78999999988764 2344578899999999999999999665 489999999999999999998865 4699
Q ss_pred CCCCcEEEccCCCCcccchh-hhcccccceeeccCccCCCCCcCCcCccccccccccccccccCccccCCCCC-------
Q 003890 593 LLNLQTLEMPSSYVDQSPED-IWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFISTLNPSSCTPDILGRLPN------- 664 (788)
Q Consensus 593 L~~L~~L~L~~~~l~~lp~~-l~~L~~L~~L~l~~~~~~~~i~~~~~~l~~L~~L~~~~~~~~~~~~l~~L~~------- 664 (788)
+++|++|+|++|.+..+|.. ++++++|++|++++|.+....|..|+.+++|++|++.++....+ .++.+++
T Consensus 122 l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~~~l~~L~~L~l~ 200 (597)
T 3oja_B 122 VPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV-DLSLIPSLFHANVS 200 (597)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC-CGGGCTTCSEEECC
T ss_pred CCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc-Chhhhhhhhhhhcc
Confidence 99999999999999999886 58999999999999987665566679999999999886433221 1222333
Q ss_pred ---------------------------------CCeEEEEccCCcChhcHHHhccCCCCCCEEEeecCCCCCcccccccC
Q 003890 665 ---------------------------------VQTLRISGDLSCYHSGVSKSLCELHKLECLKLVNERKPSRMVLYEYQ 711 (788)
Q Consensus 665 ---------------------------------L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~l 711 (788)
|+.|++++|. ... +..+..+++|+.|+|+++.... ..+..+
T Consensus 201 ~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~---l~~-~~~l~~l~~L~~L~Ls~N~l~~--~~~~~~ 274 (597)
T 3oja_B 201 YNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNN---LTD-TAWLLNYPGLVEVDLSYNELEK--IMYHPF 274 (597)
T ss_dssp SSCCSEEECCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSC---CCC-CGGGGGCTTCSEEECCSSCCCE--EESGGG
T ss_pred cCccccccCCchhheeeccCCcccccccccCCCCCEEECCCCC---CCC-ChhhccCCCCCEEECCCCccCC--CCHHHh
Confidence 3334444433 111 2557778888888888655441 345677
Q ss_pred CCccccccc---cccccccccCcccCCCCCcceEEEeccccccccccCCcccccccccCCeeEecccCc
Q 003890 712 FPPTDMARI---LSQLIRQEFVESEMSLPLLQLLDLEESDEEDDERSDILEILQDINDFVHESEEAIDT 777 (788)
Q Consensus 712 ~~~~~L~~L---~~~l~~~~lp~~l~~l~~L~~L~L~~~~l~~~~~~~~l~~l~~L~~L~~L~L~~~~~ 777 (788)
..+++|+.| .|.+ ..+|..+..+++|+.|+|++|.+.. ..+.++.+++|++|+|++|.-
T Consensus 275 ~~l~~L~~L~Ls~N~l--~~l~~~~~~l~~L~~L~Ls~N~l~~-----i~~~~~~l~~L~~L~L~~N~l 336 (597)
T 3oja_B 275 VKMQRLERLYISNNRL--VALNLYGQPIPTLKVLDLSHNHLLH-----VERNQPQFDRLENLYLDHNSI 336 (597)
T ss_dssp TTCSSCCEEECTTSCC--CEEECSSSCCTTCCEEECCSSCCCC-----CGGGHHHHTTCSEEECCSSCC
T ss_pred cCccCCCEEECCCCCC--CCCCcccccCCCCcEEECCCCCCCc-----cCcccccCCCCCEEECCCCCC
Confidence 788888888 6667 6677777788999999999998885 345678899999999998863
No 28
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.81 E-value=1e-19 Score=197.12 Aligned_cols=258 Identities=14% Similarity=0.066 Sum_probs=193.0
Q ss_pred EEeecCccccccccccccccceEEecCCCCchhhhhhhhhhhcCCccccEEEecCCCCCCC-CccccCCCCccEEEecCC
Q 003890 503 CYIMKDLIEFFSLEHSDIYLQSFLNHSSESDHLALIDCENFCEKFKHLRILNLGSAVLVQF-PPGLENLFHLKYLKLNIP 581 (788)
Q Consensus 503 Ls~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l-p~~i~~L~~L~~L~L~~~ 581 (788)
....++.....|..- .++|+.|.+.++... .+++..|.++++|++|++++|.++.+ |..++++.+|++|++++|
T Consensus 36 c~~~~~~l~~iP~~~-~~~L~~L~l~~n~i~----~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n 110 (353)
T 2z80_A 36 CKGSSGSLNSIPSGL-TEAVKSLDLSNNRIT----YISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYN 110 (353)
T ss_dssp EECCSTTCSSCCTTC-CTTCCEEECTTSCCC----EECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred eeCCCCCcccccccc-cccCcEEECCCCcCc----ccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCC
Confidence 334444444444333 568999999988763 23346789999999999999999866 467999999999999999
Q ss_pred CCcccChh-hcCCCCCcEEEccCCCCcccch--hhhcccccceeeccCcc-CCCCCcCCcCccccccccccccccc--cC
Q 003890 582 SLKCLPSL-LCTLLNLQTLEMPSSYVDQSPE--DIWMMQKLMHLNFGSIT-LPAPPKNYSSSLKNLIFISTLNPSS--CT 655 (788)
Q Consensus 582 ~i~~lp~~-i~~L~~L~~L~L~~~~l~~lp~--~l~~L~~L~~L~l~~~~-~~~~i~~~~~~l~~L~~L~~~~~~~--~~ 655 (788)
.+..+|.. ++++++|++|++++|.+..+|. .+.++++|++|++++|. +....+..|+.+++|++|++.++.. ..
T Consensus 111 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 190 (353)
T 2z80_A 111 YLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYE 190 (353)
T ss_dssp CCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEEC
T ss_pred cCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccC
Confidence 99999876 7999999999999999999987 68899999999999884 3322234468999999999886543 34
Q ss_pred ccccCCCCCCCeEEEEccCCcChhcHHH-hccCCCCCCEEEeecCCCCCccccccc---CCCccccccc--------ccc
Q 003890 656 PDILGRLPNVQTLRISGDLSCYHSGVSK-SLCELHKLECLKLVNERKPSRMVLYEY---QFPPTDMARI--------LSQ 723 (788)
Q Consensus 656 ~~~l~~L~~L~~L~l~~~~~~~~~~~~~-~l~~l~~L~~L~L~~~~~~~~~~~~~~---l~~~~~L~~L--------~~~ 723 (788)
+..++.+++|+.|+++++. . ...+. .+..+++|+.|+|+++.... ..... ......++.+ .+.
T Consensus 191 ~~~l~~l~~L~~L~l~~n~--l-~~~~~~~~~~~~~L~~L~L~~n~l~~--~~~~~l~~~~~~~~l~~l~L~~~~l~~~~ 265 (353)
T 2z80_A 191 PKSLKSIQNVSHLILHMKQ--H-ILLLEIFVDVTSSVECLELRDTDLDT--FHFSELSTGETNSLIKKFTFRNVKITDES 265 (353)
T ss_dssp TTTTTTCSEEEEEEEECSC--S-TTHHHHHHHHTTTEEEEEEESCBCTT--CCCC------CCCCCCEEEEESCBCCHHH
T ss_pred HHHHhccccCCeecCCCCc--c-ccchhhhhhhcccccEEECCCCcccc--ccccccccccccchhhccccccccccCcc
Confidence 5678999999999999987 3 34443 34568899999999654331 11111 1223334433 223
Q ss_pred ccccccCcccCCCCCcceEEEeccccccccccCCcccccccccCCeeEecccC
Q 003890 724 LIRQEFVESEMSLPLLQLLDLEESDEEDDERSDILEILQDINDFVHESEEAID 776 (788)
Q Consensus 724 l~~~~lp~~l~~l~~L~~L~L~~~~l~~~~~~~~l~~l~~L~~L~~L~L~~~~ 776 (788)
+ ..+|.++..+++|+.|+|++|.+... +...++.+++|++|+|++|+
T Consensus 266 l--~~l~~~l~~l~~L~~L~Ls~N~l~~i----~~~~~~~l~~L~~L~L~~N~ 312 (353)
T 2z80_A 266 L--FQVMKLLNQISGLLELEFSRNQLKSV----PDGIFDRLTSLQKIWLHTNP 312 (353)
T ss_dssp H--HHHHHHHHTCTTCCEEECCSSCCCCC----CTTTTTTCTTCCEEECCSSC
T ss_pred h--hhhHHHHhcccCCCEEECCCCCCCcc----CHHHHhcCCCCCEEEeeCCC
Confidence 3 45788899999999999999999854 33336899999999999986
No 29
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.81 E-value=1.4e-19 Score=211.34 Aligned_cols=258 Identities=13% Similarity=0.110 Sum_probs=174.2
Q ss_pred CCceeEEEeecCcc-cccc--ccccccccceEEecCCC-Cch-hhhhhhhhhhcCC------ccccEEEecCCCCCCCCc
Q 003890 497 PANVKWCYIMKDLI-EFFS--LEHSDIYLQSFLNHSSE-SDH-LALIDCENFCEKF------KHLRILNLGSAVLVQFPP 565 (788)
Q Consensus 497 ~~~~r~Ls~~~~~~-~~~~--~~~~~~~Lr~L~l~~~~-~~~-~~~~~~~~~~~~l------~~L~~L~L~~~~l~~lp~ 565 (788)
..++++|.+.++.. ...+ ... +++|+.|.+.++. ... .+ |..+..+ ++|++|++++|.++.+|.
T Consensus 248 l~~L~~L~L~~n~l~~~~p~~l~~-l~~L~~L~Ls~n~~l~~~~l----p~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~ 322 (636)
T 4eco_A 248 LKDLTDVEVYNCPNLTKLPTFLKA-LPEMQLINVACNRGISGEQL----KDDWQALADAPVGEKIQIIYIGYNNLKTFPV 322 (636)
T ss_dssp CTTCCEEEEECCTTCSSCCTTTTT-CSSCCEEECTTCTTSCHHHH----HHHHHHHHHSGGGGTCCEEECCSSCCSSCCC
T ss_pred cCCCCEEEecCCcCCccChHHHhc-CCCCCEEECcCCCCCccccc----hHHHHhhhccccCCCCCEEECCCCcCCccCc
Confidence 45788999987753 2333 455 8899999999887 533 33 3445444 899999999999988988
Q ss_pred --cccCCCCccEEEecCCCCc-ccChhhcCCCCCcEEEccCCCCcccchhhhcccc-cceeeccCccCCCCCcCCcCccc
Q 003890 566 --GLENLFHLKYLKLNIPSLK-CLPSLLCTLLNLQTLEMPSSYVDQSPEDIWMMQK-LMHLNFGSITLPAPPKNYSSSLK 641 (788)
Q Consensus 566 --~i~~L~~L~~L~L~~~~i~-~lp~~i~~L~~L~~L~L~~~~l~~lp~~l~~L~~-L~~L~l~~~~~~~~i~~~~~~l~ 641 (788)
.++++++|++|++++|.+. .+| .++++++|++|++++|.+..+|..+.++++ |++|++++|.+. .+|..++.++
T Consensus 323 ~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~ 400 (636)
T 4eco_A 323 ETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKS 400 (636)
T ss_dssp HHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTC
T ss_pred hhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcCc-ccchhhhhcc
Confidence 8999999999999999988 888 888899999999999988888888899998 999999888766 5666656654
Q ss_pred --cccccccccccc--cCccccC-------CCCCCCeEEEEccCCcChhcHHH-hccCCCCCCEEEeecCCCCCcccccc
Q 003890 642 --NLIFISTLNPSS--CTPDILG-------RLPNVQTLRISGDLSCYHSGVSK-SLCELHKLECLKLVNERKPSRMVLYE 709 (788)
Q Consensus 642 --~L~~L~~~~~~~--~~~~~l~-------~L~~L~~L~l~~~~~~~~~~~~~-~l~~l~~L~~L~L~~~~~~~~~~~~~ 709 (788)
+|++|++.++.. ..+..+. .+++|+.|++++|. .. .++. .+..+++|+.|+|+++... ..+.
T Consensus 401 l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~--l~-~lp~~~~~~l~~L~~L~Ls~N~l~---~i~~ 474 (636)
T 4eco_A 401 VSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQ--IS-KFPKELFSTGSPLSSINLMGNMLT---EIPK 474 (636)
T ss_dssp SSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSC--CC-SCCTHHHHTTCCCSEEECCSSCCS---BCCS
T ss_pred cCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCc--cC-cCCHHHHccCCCCCEEECCCCCCC---CcCH
Confidence 788888775432 2334454 66677777777775 22 3333 3345677777777754433 1111
Q ss_pred c-CCC-------ccccccc---cccccccccCcccC--CCCCcceEEEeccccccccccCCcccccccccCCeeEecc
Q 003890 710 Y-QFP-------PTDMARI---LSQLIRQEFVESEM--SLPLLQLLDLEESDEEDDERSDILEILQDINDFVHESEEA 774 (788)
Q Consensus 710 ~-l~~-------~~~L~~L---~~~l~~~~lp~~l~--~l~~L~~L~L~~~~l~~~~~~~~l~~l~~L~~L~~L~L~~ 774 (788)
. +.. +++|+.| .|.+ ..+|..+. .+++|+.|+|++|++.. .+..++++++|++|+|++
T Consensus 475 ~~~~~~~~~~~~l~~L~~L~Ls~N~l--~~lp~~~~~~~l~~L~~L~Ls~N~l~~-----ip~~~~~l~~L~~L~Ls~ 545 (636)
T 4eco_A 475 NSLKDENENFKNTYLLTSIDLRFNKL--TKLSDDFRATTLPYLVGIDLSYNSFSK-----FPTQPLNSSTLKGFGIRN 545 (636)
T ss_dssp SSSEETTEECTTGGGCCEEECCSSCC--CBCCGGGSTTTCTTCCEEECCSSCCSS-----CCCGGGGCSSCCEEECCS
T ss_pred HHhccccccccccCCccEEECcCCcC--CccChhhhhccCCCcCEEECCCCCCCC-----cChhhhcCCCCCEEECCC
Confidence 1 111 1255555 4455 45565554 56666666666666553 233455555666665543
No 30
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.81 E-value=3.5e-19 Score=203.49 Aligned_cols=267 Identities=12% Similarity=0.090 Sum_probs=178.3
Q ss_pred CCCceeEEEeecCcccccc---ccccccccceEEecCCCCchhhhhhhhhhhcCCccccEEEecCCCCCCCCccccCCCC
Q 003890 496 PPANVKWCYIMKDLIEFFS---LEHSDIYLQSFLNHSSESDHLALIDCENFCEKFKHLRILNLGSAVLVQFPPGLENLFH 572 (788)
Q Consensus 496 ~~~~~r~Ls~~~~~~~~~~---~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~i~~L~~ 572 (788)
.+.++++|.+.++.....+ +.. +++|+.|.+.++... ...|..|.++++|++|+|++|.++.+|.. .+.+
T Consensus 19 ~~~~L~~L~Ls~n~i~~~~~~~~~~-l~~L~~L~Ls~n~l~----~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~ 91 (520)
T 2z7x_B 19 LSQKTTILNISQNYISELWTSDILS-LSKLRILIISHNRIQ----YLDISVFKFNQELEYLDLSHNKLVKISCH--PTVN 91 (520)
T ss_dssp CCTTCSEEECCSSCCCCCCHHHHTT-CTTCCEEECCSSCCC----EEEGGGGTTCTTCCEEECCSSCCCEEECC--CCCC
T ss_pred ccccccEEECCCCcccccChhhccc-cccccEEecCCCccC----CcChHHhhcccCCCEEecCCCceeecCcc--ccCC
Confidence 3467888998887665432 455 888999999888753 23357888889999999999988888766 7888
Q ss_pred ccEEEecCCCCcc--cChhhcCCCCCcEEEccCCCCcc--------------------------cchhhhcc--------
Q 003890 573 LKYLKLNIPSLKC--LPSLLCTLLNLQTLEMPSSYVDQ--------------------------SPEDIWMM-------- 616 (788)
Q Consensus 573 L~~L~L~~~~i~~--lp~~i~~L~~L~~L~L~~~~l~~--------------------------lp~~l~~L-------- 616 (788)
|++|++++|.+.. +|..++++++|++|++++|.+.. .|..+..+
T Consensus 92 L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~ 171 (520)
T 2z7x_B 92 LKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIV 171 (520)
T ss_dssp CSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCGGGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEE
T ss_pred ccEEeccCCccccccchhhhccCCcceEEEecCcccchhhccccccceeeEEEeecccccccccccccccccccceEEEE
Confidence 8889988888875 56788888888888888775432 12112111
Q ss_pred ---------------------------------------------------------------------------cccce
Q 003890 617 ---------------------------------------------------------------------------QKLMH 621 (788)
Q Consensus 617 ---------------------------------------------------------------------------~~L~~ 621 (788)
++|++
T Consensus 172 l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~ 251 (520)
T 2z7x_B 172 FPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWY 251 (520)
T ss_dssp CCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSE
T ss_pred eccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHhhhCcccE
Confidence 13444
Q ss_pred eeccCccCCCCCcCCc-----------------------------------------------------Ccccccccccc
Q 003890 622 LNFGSITLPAPPKNYS-----------------------------------------------------SSLKNLIFIST 648 (788)
Q Consensus 622 L~l~~~~~~~~i~~~~-----------------------------------------------------~~l~~L~~L~~ 648 (788)
|++++|.+...+|..+ +.+++|++|++
T Consensus 252 L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L 331 (520)
T 2z7x_B 252 FSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDF 331 (520)
T ss_dssp EEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEEC
T ss_pred EEeecccccCccccchhhcccccCceeEeccccccceecchhhhhcccccCceeEEEcCCCccccccchhhCCcccEEEe
Confidence 4444332222222222 45556666666
Q ss_pred cccccc--CccccCCCCCCCeEEEEccCCcChhcHHHhccCCCCCCEEEeecCCCCCcccccccCCCc------------
Q 003890 649 LNPSSC--TPDILGRLPNVQTLRISGDLSCYHSGVSKSLCELHKLECLKLVNERKPSRMVLYEYQFPP------------ 714 (788)
Q Consensus 649 ~~~~~~--~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~l~~~------------ 714 (788)
.++... .+..++.+++|+.|++++|.-.....++..+..+++|+.|+|+++..... .....+..+
T Consensus 332 s~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~-l~~~~~~~l~~L~~L~Ls~N~ 410 (520)
T 2z7x_B 332 SNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYD-EKKGDCSWTKSLLSLNMSSNI 410 (520)
T ss_dssp CSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCC-GGGCSCCCCTTCCEEECCSSC
T ss_pred ECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcc-cccchhccCccCCEEECcCCC
Confidence 654332 35667888999999998887222235667788888888888886543310 000111111
Q ss_pred ----------cccccc---cccccccccCcccCCCCCcceEEEeccccccccccCCcccccccccCCeeEecccC
Q 003890 715 ----------TDMARI---LSQLIRQEFVESEMSLPLLQLLDLEESDEEDDERSDILEILQDINDFVHESEEAID 776 (788)
Q Consensus 715 ----------~~L~~L---~~~l~~~~lp~~l~~l~~L~~L~L~~~~l~~~~~~~~l~~l~~L~~L~~L~L~~~~ 776 (788)
++|+.| .+.+ ..+|.++..+++|++|+|++|++... +...+..+++|++|++++|+
T Consensus 411 l~~~~~~~l~~~L~~L~Ls~N~l--~~ip~~~~~l~~L~~L~L~~N~l~~l----~~~~~~~l~~L~~L~l~~N~ 479 (520)
T 2z7x_B 411 LTDTIFRCLPPRIKVLDLHSNKI--KSIPKQVVKLEALQELNVASNQLKSV----PDGIFDRLTSLQKIWLHTNP 479 (520)
T ss_dssp CCGGGGGSCCTTCCEEECCSSCC--CCCCGGGGGCTTCCEEECCSSCCCCC----CTTTTTTCTTCCEEECCSSC
T ss_pred CCcchhhhhcccCCEEECCCCcc--cccchhhhcCCCCCEEECCCCcCCcc----CHHHhccCCcccEEECcCCC
Confidence 567777 5666 67887777889999999999988853 22237889999999999875
No 31
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.80 E-value=6e-19 Score=198.55 Aligned_cols=187 Identities=20% Similarity=0.200 Sum_probs=97.5
Q ss_pred CceeEEEeecCcccccc-ccccccccceEEecCCCCchhhhhhhhhhhcCCccccEEEecCCCCCCCCccccCCCCccEE
Q 003890 498 ANVKWCYIMKDLIEFFS-LEHSDIYLQSFLNHSSESDHLALIDCENFCEKFKHLRILNLGSAVLVQFPPGLENLFHLKYL 576 (788)
Q Consensus 498 ~~~r~Ls~~~~~~~~~~-~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~i~~L~~L~~L 576 (788)
.++++|.+.++.....+ ... +++|+.|.+.++.... .. . +..+++|++|++++|.++.+|. +..+++|++|
T Consensus 68 ~~L~~L~Ls~n~l~~~~~~~~-l~~L~~L~l~~n~l~~----~~-~-~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L 139 (466)
T 1o6v_A 68 NNLTQINFSNNQLTDITPLKN-LTKLVDILMNNNQIAD----IT-P-LANLTNLTGLTLFNNQITDIDP-LKNLTNLNRL 139 (466)
T ss_dssp TTCCEEECCSSCCCCCGGGTT-CTTCCEEECCSSCCCC----CG-G-GTTCTTCCEEECCSSCCCCCGG-GTTCTTCSEE
T ss_pred cCCCEEECCCCccCCchhhhc-cccCCEEECCCCcccc----Ch-h-hcCCCCCCEEECCCCCCCCChH-HcCCCCCCEE
Confidence 45666666655443322 334 5666666666554411 11 1 5566666666666666555543 5555666666
Q ss_pred EecCCCCcccCh--------------------hhcCCCCCcEEEccCCCCcccchhhhcccccceeeccCccCCCCCcCC
Q 003890 577 KLNIPSLKCLPS--------------------LLCTLLNLQTLEMPSSYVDQSPEDIWMMQKLMHLNFGSITLPAPPKNY 636 (788)
Q Consensus 577 ~L~~~~i~~lp~--------------------~i~~L~~L~~L~L~~~~l~~lp~~l~~L~~L~~L~l~~~~~~~~i~~~ 636 (788)
++++|.+..+|. .+.++++|++|++++|.+..++. +.++++|++|++++|.+....+
T Consensus 140 ~l~~n~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-- 216 (466)
T 1o6v_A 140 ELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISV-LAKLTNLESLIATNNQISDITP-- 216 (466)
T ss_dssp EEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECCSSCCCCCGG--
T ss_pred ECCCCccCCChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCCChh-hccCCCCCEEEecCCccccccc--
Confidence 665555444331 24455566666666665555543 5666666666666655443221
Q ss_pred cCccccccccccccccccCccccCCCCCCCeEEEEccCCcChhcHHHhccCCCCCCEEEeecC
Q 003890 637 SSSLKNLIFISTLNPSSCTPDILGRLPNVQTLRISGDLSCYHSGVSKSLCELHKLECLKLVNE 699 (788)
Q Consensus 637 ~~~l~~L~~L~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~L~~~ 699 (788)
++.+++|++|++.++....+..+..+++|+.|++++|. . ...+. +..+++|+.|+++++
T Consensus 217 ~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~--l-~~~~~-~~~l~~L~~L~l~~n 275 (466)
T 1o6v_A 217 LGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQ--I-SNLAP-LSGLTKLTELKLGAN 275 (466)
T ss_dssp GGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSC--C-CCCGG-GTTCTTCSEEECCSS
T ss_pred ccccCCCCEEECCCCCcccchhhhcCCCCCEEECCCCc--c-ccchh-hhcCCCCCEEECCCC
Confidence 35555566665554444444445555556666655554 1 11111 444555555555543
No 32
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.80 E-value=4e-19 Score=199.35 Aligned_cols=247 Identities=13% Similarity=0.051 Sum_probs=176.9
Q ss_pred ccccceEEecCCCCchhhhhhhhhhhcCCccccEEEecCCCCC-CC-CccccCCCCccEEEecCCCCccc-ChhhcCCCC
Q 003890 519 DIYLQSFLNHSSESDHLALIDCENFCEKFKHLRILNLGSAVLV-QF-PPGLENLFHLKYLKLNIPSLKCL-PSLLCTLLN 595 (788)
Q Consensus 519 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~-~l-p~~i~~L~~L~~L~L~~~~i~~l-p~~i~~L~~ 595 (788)
.++|+.|.+.++... ...+..|.++++|++|++++|.+. .+ |..|.++++|++|++++|.+..+ |..++++++
T Consensus 29 ~~~l~~L~Ls~n~i~----~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 104 (455)
T 3v47_A 29 PAHVNYVDLSLNSIA----ELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLAN 104 (455)
T ss_dssp CTTCCEEECCSSCCC----EECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTT
T ss_pred CCccCEEEecCCccC----cCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCccc
Confidence 578999999998763 234578999999999999999986 44 56799999999999999999876 778999999
Q ss_pred CcEEEccCCCCcc-cchh--hhcccccceeeccCccCCCCCcCC-cCcccccccccccccccc--Ccccc----------
Q 003890 596 LQTLEMPSSYVDQ-SPED--IWMMQKLMHLNFGSITLPAPPKNY-SSSLKNLIFISTLNPSSC--TPDIL---------- 659 (788)
Q Consensus 596 L~~L~L~~~~l~~-lp~~--l~~L~~L~~L~l~~~~~~~~i~~~-~~~l~~L~~L~~~~~~~~--~~~~l---------- 659 (788)
|++|++++|.+.. +|.. +.++++|++|++++|.+....|.. |+.+++|++|++.++... .+..+
T Consensus 105 L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~ 184 (455)
T 3v47_A 105 LEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTL 184 (455)
T ss_dssp CCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEE
T ss_pred CCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccc
Confidence 9999999998875 4544 899999999999999876554443 689999999998753221 11111
Q ss_pred ------------------------CCCCCCCeEEEEccCCc---------------------------------------
Q 003890 660 ------------------------GRLPNVQTLRISGDLSC--------------------------------------- 676 (788)
Q Consensus 660 ------------------------~~L~~L~~L~l~~~~~~--------------------------------------- 676 (788)
..+++|+.|+++++.-.
T Consensus 185 L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 264 (455)
T 3v47_A 185 LRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDP 264 (455)
T ss_dssp EECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCC
T ss_pred cccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccC
Confidence 13355666666665400
Q ss_pred ----------------------ChhcHHHhccCCCCCCEEEeecCCCCCcccccccCCCccccccc---cccccccccCc
Q 003890 677 ----------------------YHSGVSKSLCELHKLECLKLVNERKPSRMVLYEYQFPPTDMARI---LSQLIRQEFVE 731 (788)
Q Consensus 677 ----------------------~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~l~~~~~L~~L---~~~l~~~~lp~ 731 (788)
.....+..+..+++|+.|+|+++.... .....+..+++|++| .+.+ +...|.
T Consensus 265 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~Ls~N~l-~~~~~~ 341 (455)
T 3v47_A 265 DNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINK--IDDNAFWGLTHLLKLNLSQNFL-GSIDSR 341 (455)
T ss_dssp CTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCE--ECTTTTTTCTTCCEEECCSSCC-CEECGG
T ss_pred cccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccc--cChhHhcCcccCCEEECCCCcc-CCcChh
Confidence 111223445666677777776544331 234456667777777 4555 223356
Q ss_pred ccCCCCCcceEEEeccccccccccCCcccccccccCCeeEecccC
Q 003890 732 SEMSLPLLQLLDLEESDEEDDERSDILEILQDINDFVHESEEAID 776 (788)
Q Consensus 732 ~l~~l~~L~~L~L~~~~l~~~~~~~~l~~l~~L~~L~~L~L~~~~ 776 (788)
++..+++|++|+|++|.+... ....++.+++|++|+|++|.
T Consensus 342 ~~~~l~~L~~L~Ls~N~l~~~----~~~~~~~l~~L~~L~L~~N~ 382 (455)
T 3v47_A 342 MFENLDKLEVLDLSYNHIRAL----GDQSFLGLPNLKELALDTNQ 382 (455)
T ss_dssp GGTTCTTCCEEECCSSCCCEE----CTTTTTTCTTCCEEECCSSC
T ss_pred HhcCcccCCEEECCCCccccc----ChhhccccccccEEECCCCc
Confidence 677788888888888887764 44567778888888888764
No 33
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.80 E-value=7.3e-20 Score=194.57 Aligned_cols=218 Identities=19% Similarity=0.172 Sum_probs=183.7
Q ss_pred ccccEEEecCCCCC---CCCccccCCCCccEEEecC-CCCc-ccChhhcCCCCCcEEEccCCCCc-ccchhhhcccccce
Q 003890 548 KHLRILNLGSAVLV---QFPPGLENLFHLKYLKLNI-PSLK-CLPSLLCTLLNLQTLEMPSSYVD-QSPEDIWMMQKLMH 621 (788)
Q Consensus 548 ~~L~~L~L~~~~l~---~lp~~i~~L~~L~~L~L~~-~~i~-~lp~~i~~L~~L~~L~L~~~~l~-~lp~~l~~L~~L~~ 621 (788)
.+++.|+|++|.+. .+|..++++++|++|++++ |.+. .+|..++++++|++|++++|.+. .+|..+.++++|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 57999999999998 5899999999999999995 7776 78999999999999999999887 78888999999999
Q ss_pred eeccCccCCCCCcCCcCccccccccccccccc--cCccccCCCC-CCCeEEEEccCCcChhcHHHhccCCCCCCEEEeec
Q 003890 622 LNFGSITLPAPPKNYSSSLKNLIFISTLNPSS--CTPDILGRLP-NVQTLRISGDLSCYHSGVSKSLCELHKLECLKLVN 698 (788)
Q Consensus 622 L~l~~~~~~~~i~~~~~~l~~L~~L~~~~~~~--~~~~~l~~L~-~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~L~~ 698 (788)
|++++|.+...+|..|+.+++|++|++.++.. ..+..++.++ +|+.|+++++. .....+..+..++ |+.|+|++
T Consensus 130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~--l~~~~~~~~~~l~-L~~L~Ls~ 206 (313)
T 1ogq_A 130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNR--LTGKIPPTFANLN-LAFVDLSR 206 (313)
T ss_dssp EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSE--EEEECCGGGGGCC-CSEEECCS
T ss_pred EeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCe--eeccCChHHhCCc-ccEEECcC
Confidence 99999977766677779999999999986543 4667788898 99999999987 4456677788886 99999996
Q ss_pred CCCCCcccccccCCCccccccc---cccccccccCcccCCCCCcceEEEeccccccccccCCcccccccccCCeeEeccc
Q 003890 699 ERKPSRMVLYEYQFPPTDMARI---LSQLIRQEFVESEMSLPLLQLLDLEESDEEDDERSDILEILQDINDFVHESEEAI 775 (788)
Q Consensus 699 ~~~~~~~~~~~~l~~~~~L~~L---~~~l~~~~lp~~l~~l~~L~~L~L~~~~l~~~~~~~~l~~l~~L~~L~~L~L~~~ 775 (788)
+.... .....+..+++|+.| .+.+ ...+..+..+++|++|+|++|.+.+. ....++.+++|++|+|++|
T Consensus 207 N~l~~--~~~~~~~~l~~L~~L~L~~N~l--~~~~~~~~~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~Ls~N 278 (313)
T 1ogq_A 207 NMLEG--DASVLFGSDKNTQKIHLAKNSL--AFDLGKVGLSKNLNGLDLRNNRIYGT----LPQGLTQLKFLHSLNVSFN 278 (313)
T ss_dssp SEEEE--CCGGGCCTTSCCSEEECCSSEE--CCBGGGCCCCTTCCEEECCSSCCEEC----CCGGGGGCTTCCEEECCSS
T ss_pred CcccC--cCCHHHhcCCCCCEEECCCCce--eeecCcccccCCCCEEECcCCcccCc----CChHHhcCcCCCEEECcCC
Confidence 54321 345667788999999 6666 43344578899999999999999865 5667999999999999998
Q ss_pred C
Q 003890 776 D 776 (788)
Q Consensus 776 ~ 776 (788)
.
T Consensus 279 ~ 279 (313)
T 1ogq_A 279 N 279 (313)
T ss_dssp E
T ss_pred c
Confidence 4
No 34
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.80 E-value=7.3e-19 Score=202.78 Aligned_cols=265 Identities=13% Similarity=0.051 Sum_probs=182.8
Q ss_pred CCCceeEEEeecCcccccc---ccccccccceEEecCCCCchhhhhhhhhhhcCCccccEEEecCCCCCCCCccccCCCC
Q 003890 496 PPANVKWCYIMKDLIEFFS---LEHSDIYLQSFLNHSSESDHLALIDCENFCEKFKHLRILNLGSAVLVQFPPGLENLFH 572 (788)
Q Consensus 496 ~~~~~r~Ls~~~~~~~~~~---~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~i~~L~~ 572 (788)
.+.++++|.+..+.+...+ +.. +++|+.|.+.++... .+.+..|.++++|++|+|++|.++.+|.. .+.+
T Consensus 50 ~~~~L~~L~Ls~N~i~~~~~~~~~~-l~~L~~L~Ls~N~l~----~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~ 122 (562)
T 3a79_B 50 LPPRTKALSLSQNSISELRMPDISF-LSELRVLRLSHNRIR----SLDFHVFLFNQDLEYLDVSHNRLQNISCC--PMAS 122 (562)
T ss_dssp SCTTCCEEECCSSCCCCCCGGGTTT-CTTCCEEECCSCCCC----EECTTTTTTCTTCCEEECTTSCCCEECSC--CCTT
T ss_pred CCCCcCEEECCCCCccccChhhhcc-CCCccEEECCCCCCC----cCCHHHhCCCCCCCEEECCCCcCCccCcc--cccc
Confidence 3568899999987765443 555 889999999988763 23457889999999999999999988877 7899
Q ss_pred ccEEEecCCCCcccC--hhhcCCCCCcEEEccCCCCcccchhhhccc---------------------------------
Q 003890 573 LKYLKLNIPSLKCLP--SLLCTLLNLQTLEMPSSYVDQSPEDIWMMQ--------------------------------- 617 (788)
Q Consensus 573 L~~L~L~~~~i~~lp--~~i~~L~~L~~L~L~~~~l~~lp~~l~~L~--------------------------------- 617 (788)
|++|++++|.+..+| ..++++++|++|++++|.+... .+..++
T Consensus 123 L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~--~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~ 200 (562)
T 3a79_B 123 LRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL--DLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLH 200 (562)
T ss_dssp CSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT--TTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEE
T ss_pred CCEEECCCCCccccCchHhhcccCcccEEecCCCccccC--chhhhhhceeeEEEeecccccccccCcccccccCcceEE
Confidence 999999999988764 6889999999999988855431 122222
Q ss_pred ----------------------------------------------------------------------------ccce
Q 003890 618 ----------------------------------------------------------------------------KLMH 621 (788)
Q Consensus 618 ----------------------------------------------------------------------------~L~~ 621 (788)
+|++
T Consensus 201 l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~ 280 (562)
T 3a79_B 201 LVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEY 280 (562)
T ss_dssp EEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEE
T ss_pred EEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccE
Confidence 3333
Q ss_pred eeccCccCCCCCcCCc-----------------------------------------------------Ccccccccccc
Q 003890 622 LNFGSITLPAPPKNYS-----------------------------------------------------SSLKNLIFIST 648 (788)
Q Consensus 622 L~l~~~~~~~~i~~~~-----------------------------------------------------~~l~~L~~L~~ 648 (788)
|++++|.+...+|..+ +.+++|++|++
T Consensus 281 L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~L~~L~l 360 (562)
T 3a79_B 281 LNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNF 360 (562)
T ss_dssp EEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEEC
T ss_pred EEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCcccccCccCCCCceEEEC
Confidence 3333332222233222 45566777776
Q ss_pred ccccc--cCccccCCCCCCCeEEEEccCCcChhcHHHhccCCCCCCEEEeecCCCCCcccccccCC--------------
Q 003890 649 LNPSS--CTPDILGRLPNVQTLRISGDLSCYHSGVSKSLCELHKLECLKLVNERKPSRMVLYEYQF-------------- 712 (788)
Q Consensus 649 ~~~~~--~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~l~-------------- 712 (788)
.++.. ..+..++.+++|+.|+++++.-......+..+.++++|+.|+|+++..... .....+.
T Consensus 361 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~-~~~~~~~~l~~L~~L~l~~n~ 439 (562)
T 3a79_B 361 TQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSH-AYDRTCAWAESILVLNLSSNM 439 (562)
T ss_dssp CSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSC-CSSCCCCCCTTCCEEECCSSC
T ss_pred CCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCc-cChhhhcCcccCCEEECCCCC
Confidence 65432 245667888999999998886222235566788888888888885443210 0000111
Q ss_pred -------Cc-cccccc---cccccccccCcccCCCCCcceEEEeccccccccccCCcccccccccCCeeEecccC
Q 003890 713 -------PP-TDMARI---LSQLIRQEFVESEMSLPLLQLLDLEESDEEDDERSDILEILQDINDFVHESEEAID 776 (788)
Q Consensus 713 -------~~-~~L~~L---~~~l~~~~lp~~l~~l~~L~~L~L~~~~l~~~~~~~~l~~l~~L~~L~~L~L~~~~ 776 (788)
.+ ++|+.| .|.+ ..+|.++..+++|++|+|++|++... +...+..+++|++|++++++
T Consensus 440 l~~~~~~~l~~~L~~L~L~~N~l--~~ip~~~~~l~~L~~L~L~~N~l~~l----~~~~~~~l~~L~~L~l~~N~ 508 (562)
T 3a79_B 440 LTGSVFRCLPPKVKVLDLHNNRI--MSIPKDVTHLQALQELNVASNQLKSV----PDGVFDRLTSLQYIWLHDNP 508 (562)
T ss_dssp CCGGGGSSCCTTCSEEECCSSCC--CCCCTTTTSSCCCSEEECCSSCCCCC----CTTSTTTCTTCCCEECCSCC
T ss_pred CCcchhhhhcCcCCEEECCCCcC--cccChhhcCCCCCCEEECCCCCCCCC----CHHHHhcCCCCCEEEecCCC
Confidence 12 577777 6667 67888888899999999999998853 22238899999999999875
No 35
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.80 E-value=5.3e-19 Score=198.98 Aligned_cols=252 Identities=18% Similarity=0.179 Sum_probs=167.2
Q ss_pred CceeEEEeecCcccccc-ccccccccceEEecCCCCchhhhhhhhhhhcCCccccEEEecCCCCCCCCccccCCCCccEE
Q 003890 498 ANVKWCYIMKDLIEFFS-LEHSDIYLQSFLNHSSESDHLALIDCENFCEKFKHLRILNLGSAVLVQFPPGLENLFHLKYL 576 (788)
Q Consensus 498 ~~~r~Ls~~~~~~~~~~-~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~i~~L~~L~~L 576 (788)
.+++.|.+.++.....+ ... +++|+.|.+.++... .+ + . +..+++|++|++++|.+..++. ++++++|++|
T Consensus 46 ~~l~~L~l~~~~i~~l~~~~~-l~~L~~L~Ls~n~l~-~~---~-~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L 117 (466)
T 1o6v_A 46 DQVTTLQADRLGIKSIDGVEY-LNNLTQINFSNNQLT-DI---T-P-LKNLTKLVDILMNNNQIADITP-LANLTNLTGL 117 (466)
T ss_dssp HTCCEEECCSSCCCCCTTGGG-CTTCCEEECCSSCCC-CC---G-G-GTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEE
T ss_pred ccccEEecCCCCCccCcchhh-hcCCCEEECCCCccC-Cc---h-h-hhccccCCEEECCCCccccChh-hcCCCCCCEE
Confidence 46888988877665444 455 899999999988763 11 1 3 8899999999999999998877 9999999999
Q ss_pred EecCCCCcccChhhcCCCCCcEEEccCCCCcccchhhhcccccceeeccCccCCCCCcCCcCccccccccccccccccCc
Q 003890 577 KLNIPSLKCLPSLLCTLLNLQTLEMPSSYVDQSPEDIWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFISTLNPSSCTP 656 (788)
Q Consensus 577 ~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~lp~~l~~L~~L~~L~l~~~~~~~~i~~~~~~l~~L~~L~~~~~~~~~~ 656 (788)
++++|.+..+|. +.++++|++|++++|.+..+|. +.++++|++|+++++ +.. ++. ++.+++|+.|++.++....+
T Consensus 118 ~L~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~~-~~~-~~~-~~~l~~L~~L~l~~n~l~~~ 192 (466)
T 1o6v_A 118 TLFNNQITDIDP-LKNLTNLNRLELSSNTISDISA-LSGLTSLQQLSFGNQ-VTD-LKP-LANLTTLERLDISSNKVSDI 192 (466)
T ss_dssp ECCSSCCCCCGG-GTTCTTCSEEEEEEEEECCCGG-GTTCTTCSEEEEEES-CCC-CGG-GTTCTTCCEEECCSSCCCCC
T ss_pred ECCCCCCCCChH-HcCCCCCCEEECCCCccCCChh-hccCCcccEeecCCc-ccC-chh-hccCCCCCEEECcCCcCCCC
Confidence 999999999875 8999999999999998777765 666666666666422 111 111 25555555555554433333
Q ss_pred cccCCCCCCCeEEEEccCCcC-------------------hhcHHHhccCCCCCCEEEeecCCCCCcccccccCCCcccc
Q 003890 657 DILGRLPNVQTLRISGDLSCY-------------------HSGVSKSLCELHKLECLKLVNERKPSRMVLYEYQFPPTDM 717 (788)
Q Consensus 657 ~~l~~L~~L~~L~l~~~~~~~-------------------~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~l~~~~~L 717 (788)
..+..+++|+.|+++++.-.. .... ..+..+++|+.|+++++... ....+..+++|
T Consensus 193 ~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~l~~n~l~----~~~~~~~l~~L 267 (466)
T 1o6v_A 193 SVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDI-GTLASLTNLTDLDLANNQIS----NLAPLSGLTKL 267 (466)
T ss_dssp GGGGGCTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCC----CCGGGTTCTTC
T ss_pred hhhccCCCCCEEEecCCcccccccccccCCCCEEECCCCCcccc-hhhhcCCCCCEEECCCCccc----cchhhhcCCCC
Confidence 344444455555554443000 1111 23455566666666644332 12225556677
Q ss_pred ccc---cccccccccCcccCCCCCcceEEEeccccccccccCCcccccccccCCeeEecccC
Q 003890 718 ARI---LSQLIRQEFVESEMSLPLLQLLDLEESDEEDDERSDILEILQDINDFVHESEEAID 776 (788)
Q Consensus 718 ~~L---~~~l~~~~lp~~l~~l~~L~~L~L~~~~l~~~~~~~~l~~l~~L~~L~~L~L~~~~ 776 (788)
++| .+.+ ..+|. +..+++|+.|+|++|.+.. ++.++.+++|++|++++|.
T Consensus 268 ~~L~l~~n~l--~~~~~-~~~l~~L~~L~L~~n~l~~------~~~~~~l~~L~~L~L~~n~ 320 (466)
T 1o6v_A 268 TELKLGANQI--SNISP-LAGLTALTNLELNENQLED------ISPISNLKNLTYLTLYFNN 320 (466)
T ss_dssp SEEECCSSCC--CCCGG-GTTCTTCSEEECCSSCCSC------CGGGGGCTTCSEEECCSSC
T ss_pred CEEECCCCcc--Ccccc-ccCCCccCeEEcCCCcccC------chhhcCCCCCCEEECcCCc
Confidence 777 4455 44553 6677788888888887764 4457788888888888874
No 36
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.80 E-value=1.3e-18 Score=186.58 Aligned_cols=261 Identities=13% Similarity=0.049 Sum_probs=200.1
Q ss_pred CCCceeEEEeecCcccccc---ccccccccceEEecCCCCchhhhhhhhhhhcCCccccEEEecCCCCCCCCccccCCCC
Q 003890 496 PPANVKWCYIMKDLIEFFS---LEHSDIYLQSFLNHSSESDHLALIDCENFCEKFKHLRILNLGSAVLVQFPPGLENLFH 572 (788)
Q Consensus 496 ~~~~~r~Ls~~~~~~~~~~---~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~i~~L~~ 572 (788)
.+.+++.|.+.++.....+ ... +++|+.|.+.++... ...+..|..+++|++|++++|.++.+|..+. .+
T Consensus 52 ~~~~l~~L~l~~n~i~~~~~~~~~~-l~~L~~L~L~~n~l~----~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~--~~ 124 (332)
T 2ft3_A 52 ISPDTTLLDLQNNDISELRKDDFKG-LQHLYALVLVNNKIS----KIHEKAFSPLRKLQKLYISKNHLVEIPPNLP--SS 124 (332)
T ss_dssp CCTTCCEEECCSSCCCEECTTTTTT-CTTCCEEECCSSCCC----EECGGGSTTCTTCCEEECCSSCCCSCCSSCC--TT
T ss_pred CCCCCeEEECCCCcCCccCHhHhhC-CCCCcEEECCCCccC----ccCHhHhhCcCCCCEEECCCCcCCccCcccc--cc
Confidence 3567899999988765442 556 899999999988763 2345789999999999999999999998776 89
Q ss_pred ccEEEecCCCCcccChh-hcCCCCCcEEEccCCCCc---ccchhhhcccccceeeccCccCCCCCcCCcCcccccccccc
Q 003890 573 LKYLKLNIPSLKCLPSL-LCTLLNLQTLEMPSSYVD---QSPEDIWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFIST 648 (788)
Q Consensus 573 L~~L~L~~~~i~~lp~~-i~~L~~L~~L~L~~~~l~---~lp~~l~~L~~L~~L~l~~~~~~~~i~~~~~~l~~L~~L~~ 648 (788)
|++|++++|.+..+|.. +.++++|++|++++|.+. ..|..+..+ +|++|++++|.+.. +|..+. ++|++|++
T Consensus 125 L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l 200 (332)
T 2ft3_A 125 LVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG-IPKDLP--ETLNELHL 200 (332)
T ss_dssp CCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS-CCSSSC--SSCSCCBC
T ss_pred CCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCc-cCcccc--CCCCEEEC
Confidence 99999999999988764 799999999999999775 345567777 99999999987653 433223 68999998
Q ss_pred cccccc--CccccCCCCCCCeEEEEccCCcChhcHHHhccCCCCCCEEEeecCCCCCcccccccCCCccccccc---ccc
Q 003890 649 LNPSSC--TPDILGRLPNVQTLRISGDLSCYHSGVSKSLCELHKLECLKLVNERKPSRMVLYEYQFPPTDMARI---LSQ 723 (788)
Q Consensus 649 ~~~~~~--~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~l~~~~~L~~L---~~~ 723 (788)
.++... .+..+..+++|+.|+++++. .....+..+..+++|+.|+|+++... ..+..+..+++|+.| .|.
T Consensus 201 ~~n~i~~~~~~~l~~l~~L~~L~L~~N~--l~~~~~~~~~~l~~L~~L~L~~N~l~---~lp~~l~~l~~L~~L~l~~N~ 275 (332)
T 2ft3_A 201 DHNKIQAIELEDLLRYSKLYRLGLGHNQ--IRMIENGSLSFLPTLRELHLDNNKLS---RVPAGLPDLKLLQVVYLHTNN 275 (332)
T ss_dssp CSSCCCCCCTTSSTTCTTCSCCBCCSSC--CCCCCTTGGGGCTTCCEEECCSSCCC---BCCTTGGGCTTCCEEECCSSC
T ss_pred CCCcCCccCHHHhcCCCCCCEEECCCCc--CCcCChhHhhCCCCCCEEECCCCcCe---ecChhhhcCccCCEEECCCCC
Confidence 865433 33568999999999999987 44444457888999999999977655 456667888999999 566
Q ss_pred ccccccCc-ccCC------CCCcceEEEeccccccccccCCcccccccccCCeeEecccC
Q 003890 724 LIRQEFVE-SEMS------LPLLQLLDLEESDEEDDERSDILEILQDINDFVHESEEAID 776 (788)
Q Consensus 724 l~~~~lp~-~l~~------l~~L~~L~L~~~~l~~~~~~~~l~~l~~L~~L~~L~L~~~~ 776 (788)
+ ..+|. .+.. +++|+.|++++|++... ......+..+++|+.|+++++.
T Consensus 276 l--~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~--~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 276 I--TKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYW--EVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp C--CBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGG--GSCGGGGTTBCCSTTEEC----
T ss_pred C--CccChhHccccccccccccccceEeecCccccc--ccCcccccccchhhhhhccccc
Confidence 7 55542 2322 57899999999998732 0034568889999999999875
No 37
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.79 E-value=4.4e-19 Score=202.66 Aligned_cols=123 Identities=15% Similarity=0.064 Sum_probs=103.7
Q ss_pred eEEEeecCccccccccccccccceEEecCCCCchhhhhhhhhhhcCCccccEEEecCCCCCCC-CccccCCCCccEEEec
Q 003890 501 KWCYIMKDLIEFFSLEHSDIYLQSFLNHSSESDHLALIDCENFCEKFKHLRILNLGSAVLVQF-PPGLENLFHLKYLKLN 579 (788)
Q Consensus 501 r~Ls~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l-p~~i~~L~~L~~L~L~ 579 (788)
+++.+.++.....+..- .++|+.|.+.++... ..++..|..+++|++|+|++|.++.+ |..|+++++|++|+++
T Consensus 3 ~~l~ls~n~l~~ip~~~-~~~L~~L~Ls~n~i~----~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls 77 (520)
T 2z7x_B 3 FLVDRSKNGLIHVPKDL-SQKTTILNISQNYIS----ELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLS 77 (520)
T ss_dssp CEEECTTSCCSSCCCSC-CTTCSEEECCSSCCC----CCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECC
T ss_pred ceEecCCCCcccccccc-cccccEEECCCCccc----ccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecC
Confidence 56677766665555333 579999999998863 23457899999999999999999966 7789999999999999
Q ss_pred CCCCcccChhhcCCCCCcEEEccCCCCcc--cchhhhcccccceeeccCccCC
Q 003890 580 IPSLKCLPSLLCTLLNLQTLEMPSSYVDQ--SPEDIWMMQKLMHLNFGSITLP 630 (788)
Q Consensus 580 ~~~i~~lp~~i~~L~~L~~L~L~~~~l~~--lp~~l~~L~~L~~L~l~~~~~~ 630 (788)
+|.+..+|.. .+++|++|++++|.+.. +|..++++++|++|++++|.+.
T Consensus 78 ~N~l~~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~ 128 (520)
T 2z7x_B 78 HNKLVKISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLE 128 (520)
T ss_dssp SSCCCEEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCC
T ss_pred CCceeecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccc
Confidence 9999999877 89999999999998876 5778999999999999887654
No 38
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.79 E-value=8.3e-19 Score=204.34 Aligned_cols=265 Identities=17% Similarity=0.122 Sum_probs=200.4
Q ss_pred CCceeEEEeecCcccccc--ccccccccceEEecCCCCchhhhhhhhhhhcCCccccEEEecCCCCC-CCCc-cccCCCC
Q 003890 497 PANVKWCYIMKDLIEFFS--LEHSDIYLQSFLNHSSESDHLALIDCENFCEKFKHLRILNLGSAVLV-QFPP-GLENLFH 572 (788)
Q Consensus 497 ~~~~r~Ls~~~~~~~~~~--~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~-~lp~-~i~~L~~ 572 (788)
..+++.|.+.++.....+ ... +++|+.|.+.++... ..++..+..+++|+.|++++|.+. .+|. .+..+++
T Consensus 277 l~~L~~L~l~~n~l~~lp~~l~~-l~~L~~L~l~~n~l~----~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~ 351 (606)
T 3t6q_A 277 FSGLQELDLTATHLSELPSGLVG-LSTLKKLVLSANKFE----NLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLEN 351 (606)
T ss_dssp CTTCSEEECTTSCCSCCCSSCCS-CTTCCEEECTTCCCS----BGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTT
T ss_pred ccCCCEEeccCCccCCCChhhcc-cccCCEEECccCCcC----cCchhhhhccCcCCEEECCCCCcccccchhhhhccCc
Confidence 457888888877665444 445 788888888887753 233467888889999999998876 5554 4888899
Q ss_pred ccEEEecCCCCccc---ChhhcCCCCCcEEEccCCCCccc-chhhhcccccceeeccCccCCCCCc-CCcCccccccccc
Q 003890 573 LKYLKLNIPSLKCL---PSLLCTLLNLQTLEMPSSYVDQS-PEDIWMMQKLMHLNFGSITLPAPPK-NYSSSLKNLIFIS 647 (788)
Q Consensus 573 L~~L~L~~~~i~~l---p~~i~~L~~L~~L~L~~~~l~~l-p~~l~~L~~L~~L~l~~~~~~~~i~-~~~~~l~~L~~L~ 647 (788)
|++|++++|.+..+ |..++++++|++|++++|.+..+ |..+.++++|++|++++|.+....+ ..|+.+++|++|+
T Consensus 352 L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ 431 (606)
T 3t6q_A 352 LRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLN 431 (606)
T ss_dssp CCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEE
T ss_pred CCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEE
Confidence 99999999888765 56788899999999999977666 4568889999999998886543332 2358888999998
Q ss_pred cccccc--cCccccCCCCCCCeEEEEccCCcChh---cHHHhccCCCCCCEEEeecCCCCCcccccccCCCccccccc--
Q 003890 648 TLNPSS--CTPDILGRLPNVQTLRISGDLSCYHS---GVSKSLCELHKLECLKLVNERKPSRMVLYEYQFPPTDMARI-- 720 (788)
Q Consensus 648 ~~~~~~--~~~~~l~~L~~L~~L~l~~~~~~~~~---~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~l~~~~~L~~L-- 720 (788)
+.++.. ..+..++.+++|+.|++++|. ... ..+..+..+++|+.|+|+++.... ..+..+..+++|++|
T Consensus 432 l~~n~l~~~~~~~~~~l~~L~~L~L~~n~--l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~L 507 (606)
T 3t6q_A 432 LSHSLLDISSEQLFDGLPALQHLNLQGNH--FPKGNIQKTNSLQTLGRLEILVLSFCDLSS--IDQHAFTSLKMMNHVDL 507 (606)
T ss_dssp CTTCCCBTTCTTTTTTCTTCCEEECTTCB--CGGGEECSSCGGGGCTTCCEEECTTSCCCE--ECTTTTTTCTTCCEEEC
T ss_pred CCCCccCCcCHHHHhCCCCCCEEECCCCC--CCccccccchhhccCCCccEEECCCCccCc--cChhhhccccCCCEEEC
Confidence 886543 334557889999999999886 222 122567888999999999765441 345677888999999
Q ss_pred -cccccccccCcccCCCCCcceEEEeccccccccccCCcccccccccCCeeEecccC
Q 003890 721 -LSQLIRQEFVESEMSLPLLQLLDLEESDEEDDERSDILEILQDINDFVHESEEAID 776 (788)
Q Consensus 721 -~~~l~~~~lp~~l~~l~~L~~L~L~~~~l~~~~~~~~l~~l~~L~~L~~L~L~~~~ 776 (788)
.|.+ ....|.++..+++| .|+|++|.+... ....++.+++|++|++++|+
T Consensus 508 s~N~l-~~~~~~~l~~l~~L-~L~L~~N~l~~~----~~~~~~~l~~L~~L~l~~N~ 558 (606)
T 3t6q_A 508 SHNRL-TSSSIEALSHLKGI-YLNLASNHISII----LPSLLPILSQQRTINLRQNP 558 (606)
T ss_dssp CSSCC-CGGGGGGGTTCCSC-EEECCSSCCCCC----CGGGHHHHHTSSEEECTTCC
T ss_pred CCCcc-CcCChhHhCccccc-EEECcCCccccc----CHhhcccCCCCCEEeCCCCC
Confidence 5666 34457788899999 999999999875 44457889999999999875
No 39
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.79 E-value=1.2e-18 Score=210.55 Aligned_cols=268 Identities=18% Similarity=0.156 Sum_probs=182.1
Q ss_pred CCCceeEEEeecCcccccc---ccccccccceEEecCCCCchhhhhhhhhhhcCCccccEEEecCCCCCCC-CccccCCC
Q 003890 496 PPANVKWCYIMKDLIEFFS---LEHSDIYLQSFLNHSSESDHLALIDCENFCEKFKHLRILNLGSAVLVQF-PPGLENLF 571 (788)
Q Consensus 496 ~~~~~r~Ls~~~~~~~~~~---~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l-p~~i~~L~ 571 (788)
.+.++++|.+..+.+.... +.. +++|+.|.+.++..... +.+..|.++++|++|+|++|.+..+ |..|+++.
T Consensus 22 lp~~l~~LdLs~N~i~~i~~~~~~~-l~~L~~LdLs~n~~~~~---i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~ 97 (844)
T 3j0a_A 22 VLNTTERLLLSFNYIRTVTASSFPF-LEQLQLLELGSQYTPLT---IDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLF 97 (844)
T ss_dssp SCTTCCEEEEESCCCCEECSSSCSS-CCSCSEEEECTTCCCCE---ECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCS
T ss_pred CCCCcCEEECCCCcCCccChhHCcc-cccCeEEeCCCCCCccc---cCHHHhcCCCCCCEEECCCCcCcccCHhHccCCc
Confidence 5678999999988765432 556 89999999998854222 2357889999999999999998854 78899999
Q ss_pred CccEEEecCCCCcc-cChh--hcCCCCCcEEEccCCCCcccc--hhhhcccccceeeccCccCCCCCcCCcCcc--cccc
Q 003890 572 HLKYLKLNIPSLKC-LPSL--LCTLLNLQTLEMPSSYVDQSP--EDIWMMQKLMHLNFGSITLPAPPKNYSSSL--KNLI 644 (788)
Q Consensus 572 ~L~~L~L~~~~i~~-lp~~--i~~L~~L~~L~L~~~~l~~lp--~~l~~L~~L~~L~l~~~~~~~~i~~~~~~l--~~L~ 644 (788)
+|++|+|++|.+.. +|.. ++++++|++|++++|.+..++ ..++++++|++|++++|.+....+..++.+ ++|+
T Consensus 98 ~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~ 177 (844)
T 3j0a_A 98 HLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLS 177 (844)
T ss_dssp SCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSC
T ss_pred ccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccc
Confidence 99999999998875 5554 889999999999999776653 468899999999998886654444334444 4455
Q ss_pred ccccccccc--cCccccCC-------------------------------------------------------------
Q 003890 645 FISTLNPSS--CTPDILGR------------------------------------------------------------- 661 (788)
Q Consensus 645 ~L~~~~~~~--~~~~~l~~------------------------------------------------------------- 661 (788)
.|++..+.. ..+..++.
T Consensus 178 ~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~ 257 (844)
T 3j0a_A 178 FFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQ 257 (844)
T ss_dssp CCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGG
T ss_pred eEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCCh
Confidence 554442211 11111111
Q ss_pred -------CCCCCeEEEEccCCcChhcHHHhccCCCCCCEEEeecCCCCCcccccccCCCccccccc---cccccccccCc
Q 003890 662 -------LPNVQTLRISGDLSCYHSGVSKSLCELHKLECLKLVNERKPSRMVLYEYQFPPTDMARI---LSQLIRQEFVE 731 (788)
Q Consensus 662 -------L~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~l~~~~~L~~L---~~~l~~~~lp~ 731 (788)
.++|+.|+++++. .....+..+..+++|+.|+|+++.... .....+..+++|++| .|.+ +...|.
T Consensus 258 ~~f~~l~~~~L~~L~Ls~n~--l~~~~~~~~~~l~~L~~L~L~~n~i~~--~~~~~~~~l~~L~~L~Ls~N~l-~~~~~~ 332 (844)
T 3j0a_A 258 NTFAGLARSSVRHLDLSHGF--VFSLNSRVFETLKDLKVLNLAYNKINK--IADEAFYGLDNLQVLNLSYNLL-GELYSS 332 (844)
T ss_dssp TTTTTTTTSCCCEEECTTCC--CCEECSCCSSSCCCCCEEEEESCCCCE--ECTTTTTTCSSCCEEEEESCCC-SCCCSC
T ss_pred hhhhccccCCccEEECCCCc--ccccChhhhhcCCCCCEEECCCCcCCC--CChHHhcCCCCCCEEECCCCCC-CccCHH
Confidence 1345555555554 223334556667777777777554331 234556667777777 4555 223366
Q ss_pred ccCCCCCcceEEEeccccccccccCCcccccccccCCeeEecccC
Q 003890 732 SEMSLPLLQLLDLEESDEEDDERSDILEILQDINDFVHESEEAID 776 (788)
Q Consensus 732 ~l~~l~~L~~L~L~~~~l~~~~~~~~l~~l~~L~~L~~L~L~~~~ 776 (788)
++..+++|+.|+|++|.+... ....+..+++|++|+|++|.
T Consensus 333 ~~~~l~~L~~L~L~~N~i~~~----~~~~~~~l~~L~~L~Ls~N~ 373 (844)
T 3j0a_A 333 NFYGLPKVAYIDLQKNHIAII----QDQTFKFLEKLQTLDLRDNA 373 (844)
T ss_dssp SCSSCTTCCEEECCSCCCCCC----CSSCSCSCCCCCEEEEETCC
T ss_pred HhcCCCCCCEEECCCCCCCcc----ChhhhcCCCCCCEEECCCCC
Confidence 777788888888888877654 34457778888888888775
No 40
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.79 E-value=8e-19 Score=204.47 Aligned_cols=264 Identities=14% Similarity=0.078 Sum_probs=197.6
Q ss_pred ceeEEEeecCcccccc---ccccccccceEEecCCCCchhhhhhhhhhhcCCccccEEEecCCCCCCC-CccccCCCCcc
Q 003890 499 NVKWCYIMKDLIEFFS---LEHSDIYLQSFLNHSSESDHLALIDCENFCEKFKHLRILNLGSAVLVQF-PPGLENLFHLK 574 (788)
Q Consensus 499 ~~r~Ls~~~~~~~~~~---~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l-p~~i~~L~~L~ 574 (788)
+++.+.+.++.....+ +.. +++|+.|.+.++... .+|..+..+++|++|++++|.+..+ |..++.+++|+
T Consensus 255 ~L~~L~l~~n~l~~~~~~~~~~-l~~L~~L~l~~n~l~-----~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 328 (606)
T 3t6q_A 255 SVESINLQKHYFFNISSNTFHC-FSGLQELDLTATHLS-----ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLT 328 (606)
T ss_dssp EEEEEECTTCCCSSCCTTTTTT-CTTCSEEECTTSCCS-----CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCS
T ss_pred ceeEEEeecCccCccCHHHhcc-ccCCCEEeccCCccC-----CCChhhcccccCCEEECccCCcCcCchhhhhccCcCC
Confidence 6777888776654333 445 788999998888753 2346678888999999999988855 56788889999
Q ss_pred EEEecCCCCc-ccChh-hcCCCCCcEEEccCCCCccc---chhhhcccccceeeccCccCCCCCcCCcCccccccccccc
Q 003890 575 YLKLNIPSLK-CLPSL-LCTLLNLQTLEMPSSYVDQS---PEDIWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFISTL 649 (788)
Q Consensus 575 ~L~L~~~~i~-~lp~~-i~~L~~L~~L~L~~~~l~~l---p~~l~~L~~L~~L~l~~~~~~~~i~~~~~~l~~L~~L~~~ 649 (788)
+|++++|.+. .+|.. +.++++|++|++++|.+..+ |..+..+++|++|++++|.+....+..|+.+++|+.|++.
T Consensus 329 ~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 408 (606)
T 3t6q_A 329 HLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLA 408 (606)
T ss_dssp EEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECT
T ss_pred EEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECC
Confidence 9999988876 66554 78889999999999877766 4568889999999998886654444555888899999888
Q ss_pred ccccc--Cc-cccCCCCCCCeEEEEccCCcChhcHHHhccCCCCCCEEEeecCCCCCcc-cccccCCCccccccc---cc
Q 003890 650 NPSSC--TP-DILGRLPNVQTLRISGDLSCYHSGVSKSLCELHKLECLKLVNERKPSRM-VLYEYQFPPTDMARI---LS 722 (788)
Q Consensus 650 ~~~~~--~~-~~l~~L~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~-~~~~~l~~~~~L~~L---~~ 722 (788)
++... .+ ..+..+++|+.|++++|. .....+..+..+++|+.|+|+++...... .....+..+++|++| .+
T Consensus 409 ~n~l~~~~~~~~~~~l~~L~~L~l~~n~--l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n 486 (606)
T 3t6q_A 409 FTRLKVKDAQSPFQNLHLLKVLNLSHSL--LDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFC 486 (606)
T ss_dssp TCCEECCTTCCTTTTCTTCCEEECTTCC--CBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTS
T ss_pred CCcCCCcccchhhhCcccCCEEECCCCc--cCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCC
Confidence 65432 22 237888999999999887 44455667888899999999865443110 122456778888888 55
Q ss_pred cccccccCcccCCCCCcceEEEeccccccccccCCcccccccccCCeeEecccC
Q 003890 723 QLIRQEFVESEMSLPLLQLLDLEESDEEDDERSDILEILQDINDFVHESEEAID 776 (788)
Q Consensus 723 ~l~~~~lp~~l~~l~~L~~L~L~~~~l~~~~~~~~l~~l~~L~~L~~L~L~~~~ 776 (788)
.+ ....|.++..+++|+.|+|++|++... ....+.++++| +|++++|.
T Consensus 487 ~l-~~~~~~~~~~l~~L~~L~Ls~N~l~~~----~~~~l~~l~~L-~L~L~~N~ 534 (606)
T 3t6q_A 487 DL-SSIDQHAFTSLKMMNHVDLSHNRLTSS----SIEALSHLKGI-YLNLASNH 534 (606)
T ss_dssp CC-CEECTTTTTTCTTCCEEECCSSCCCGG----GGGGGTTCCSC-EEECCSSC
T ss_pred cc-CccChhhhccccCCCEEECCCCccCcC----ChhHhCccccc-EEECcCCc
Confidence 66 233467888899999999999998876 56678889999 99999885
No 41
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.79 E-value=3.4e-18 Score=183.20 Aligned_cols=261 Identities=11% Similarity=0.015 Sum_probs=202.4
Q ss_pred CCCceeEEEeecCcccccc---ccccccccceEEecCCCCchhhhhhhhhhhcCCccccEEEecCCCCCCCCccccCCCC
Q 003890 496 PPANVKWCYIMKDLIEFFS---LEHSDIYLQSFLNHSSESDHLALIDCENFCEKFKHLRILNLGSAVLVQFPPGLENLFH 572 (788)
Q Consensus 496 ~~~~~r~Ls~~~~~~~~~~---~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~i~~L~~ 572 (788)
.+..++.|.+.++.....+ ... +++|+.|.+.++... ...|..|..+++|++|++++|.++.+|..+. .+
T Consensus 50 ~~~~l~~L~L~~n~i~~~~~~~~~~-l~~L~~L~L~~n~l~----~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~--~~ 122 (330)
T 1xku_A 50 LPPDTALLDLQNNKITEIKDGDFKN-LKNLHTLILINNKIS----KISPGAFAPLVKLERLYLSKNQLKELPEKMP--KT 122 (330)
T ss_dssp CCTTCCEEECCSSCCCCBCTTTTTT-CTTCCEEECCSSCCC----CBCTTTTTTCTTCCEEECCSSCCSBCCSSCC--TT
T ss_pred CCCCCeEEECCCCcCCEeChhhhcc-CCCCCEEECCCCcCC----eeCHHHhcCCCCCCEEECCCCcCCccChhhc--cc
Confidence 4568899999988765443 455 899999999988763 2335789999999999999999999988775 79
Q ss_pred ccEEEecCCCCcccCh-hhcCCCCCcEEEccCCCCc---ccchhhhcccccceeeccCccCCCCCcCCcCcccccccccc
Q 003890 573 LKYLKLNIPSLKCLPS-LLCTLLNLQTLEMPSSYVD---QSPEDIWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFIST 648 (788)
Q Consensus 573 L~~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~l~---~lp~~l~~L~~L~~L~l~~~~~~~~i~~~~~~l~~L~~L~~ 648 (788)
|++|++++|.+..+|. .+.++++|++|++++|.+. ..|..+.++++|++|++++|.+.. +|..+. ++|++|++
T Consensus 123 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l 199 (330)
T 1xku_A 123 LQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT-IPQGLP--PSLTELHL 199 (330)
T ss_dssp CCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS-CCSSCC--TTCSEEEC
T ss_pred ccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcccc-CCcccc--ccCCEEEC
Confidence 9999999999998865 5799999999999999775 345679999999999999986653 333223 78999998
Q ss_pred cccccc--CccccCCCCCCCeEEEEccCCcChhcHHHhccCCCCCCEEEeecCCCCCcccccccCCCccccccc---ccc
Q 003890 649 LNPSSC--TPDILGRLPNVQTLRISGDLSCYHSGVSKSLCELHKLECLKLVNERKPSRMVLYEYQFPPTDMARI---LSQ 723 (788)
Q Consensus 649 ~~~~~~--~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~l~~~~~L~~L---~~~ 723 (788)
.++... .+..+..+++|+.|+++++. .....+..+..+++|+.|+|+++... ..+..+..+++|++| .|.
T Consensus 200 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~--l~~~~~~~~~~l~~L~~L~L~~N~l~---~lp~~l~~l~~L~~L~l~~N~ 274 (330)
T 1xku_A 200 DGNKITKVDAASLKGLNNLAKLGLSFNS--ISAVDNGSLANTPHLRELHLNNNKLV---KVPGGLADHKYIQVVYLHNNN 274 (330)
T ss_dssp TTSCCCEECTGGGTTCTTCCEEECCSSC--CCEECTTTGGGSTTCCEEECCSSCCS---SCCTTTTTCSSCCEEECCSSC
T ss_pred CCCcCCccCHHHhcCCCCCCEEECCCCc--CceeChhhccCCCCCCEEECCCCcCc---cCChhhccCCCcCEEECCCCc
Confidence 865433 34578999999999999987 44444457888999999999977655 456678889999999 567
Q ss_pred ccccccCc-ccC------CCCCcceEEEeccccccccccCCcccccccccCCeeEeccc
Q 003890 724 LIRQEFVE-SEM------SLPLLQLLDLEESDEEDDERSDILEILQDINDFVHESEEAI 775 (788)
Q Consensus 724 l~~~~lp~-~l~------~l~~L~~L~L~~~~l~~~~~~~~l~~l~~L~~L~~L~L~~~ 775 (788)
+ ..+|. .+. ..+.|+.|++++|++... ......+..+++|+.++|+++
T Consensus 275 i--~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~--~i~~~~f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 275 I--SAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYW--EIQPSTFRCVYVRAAVQLGNY 329 (330)
T ss_dssp C--CCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGG--GSCGGGGTTCCCGGGEEC---
T ss_pred C--CccChhhcCCcccccccccccceEeecCccccc--ccCccccccccceeEEEeccc
Confidence 7 55543 232 247899999999998642 013456788999999999886
No 42
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.79 E-value=6.3e-19 Score=203.74 Aligned_cols=128 Identities=18% Similarity=0.149 Sum_probs=79.2
Q ss_pred CCCceeEEEeecCcccccc---ccccccccceEEecCCCCchhhhhhhhhhhcCCccccEEEecCCCCCCCC-ccccCCC
Q 003890 496 PPANVKWCYIMKDLIEFFS---LEHSDIYLQSFLNHSSESDHLALIDCENFCEKFKHLRILNLGSAVLVQFP-PGLENLF 571 (788)
Q Consensus 496 ~~~~~r~Ls~~~~~~~~~~---~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp-~~i~~L~ 571 (788)
.+..+++|.+.++.....+ +.. +++|+.|.+.++... .+.+..|.++++|++|+|++|.++.+| ..|+++.
T Consensus 26 l~~~l~~L~Ls~n~l~~~~~~~~~~-l~~L~~L~Ls~n~i~----~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 100 (570)
T 2z63_A 26 LPFSTKNLDLSFNPLRHLGSYSFFS-FPELQVLDLSRCEIQ----TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLS 100 (570)
T ss_dssp SCSSCCEEECCSCCCCEECTTTTTT-CSSCCEEECTTCCCC----EECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCT
T ss_pred ccccccEEEccCCccCccChhHhhC-CCCceEEECCCCcCC----ccCcccccCchhCCEEeCcCCcCCccCHhhhcCcc
Confidence 3456777777766554332 444 777777777776542 123356666777777777777666444 4566666
Q ss_pred CccEEEecCCCCcccCh-hhcCCCCCcEEEccCCCCcc--cchhhhcccccceeeccCcc
Q 003890 572 HLKYLKLNIPSLKCLPS-LLCTLLNLQTLEMPSSYVDQ--SPEDIWMMQKLMHLNFGSIT 628 (788)
Q Consensus 572 ~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~l~~--lp~~l~~L~~L~~L~l~~~~ 628 (788)
+|++|++++|.+..+|. .++++++|++|++++|.+.. +|..++++++|++|++++|.
T Consensus 101 ~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~ 160 (570)
T 2z63_A 101 SLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK 160 (570)
T ss_dssp TCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSC
T ss_pred ccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCc
Confidence 66666666666666654 46666666666666665543 45666666666666666553
No 43
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.78 E-value=1.1e-18 Score=203.40 Aligned_cols=118 Identities=15% Similarity=0.187 Sum_probs=88.3
Q ss_pred CCCceeEEEeecCccccc-c--ccccccccceEEecCCCCchhhhhhhhhhhcCCccccEEEecCCCCCCCC-ccccCCC
Q 003890 496 PPANVKWCYIMKDLIEFF-S--LEHSDIYLQSFLNHSSESDHLALIDCENFCEKFKHLRILNLGSAVLVQFP-PGLENLF 571 (788)
Q Consensus 496 ~~~~~r~Ls~~~~~~~~~-~--~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp-~~i~~L~ 571 (788)
...++++|.+.++..... + +.. +++|+.|.+.++... ...|..|.++++|++|++++|.+..+| ..++++.
T Consensus 54 ~l~~L~~L~Ls~n~l~~i~~~~~~~-l~~L~~L~Ls~n~l~----~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 128 (606)
T 3vq2_A 54 NFSELQWLDLSRCEIETIEDKAWHG-LHHLSNLILTGNPIQ----SFSPGSFSGLTSLENLVAVETKLASLESFPIGQLI 128 (606)
T ss_dssp TCTTCCEEECTTCCCCEECTTTTTT-CTTCCEEECTTCCCC----CCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCT
T ss_pred CCccCcEEeCCCCcccccCHHHhhc-hhhcCEeECCCCccc----ccChhhcCCcccCCEEEccCCccccccccccCCCC
Confidence 346788888887765543 2 455 888999998887752 233577888899999999999888666 6788888
Q ss_pred CccEEEecCCCCc--ccChhhcCCCCCcEEEccCCCCcccch-hhhcccc
Q 003890 572 HLKYLKLNIPSLK--CLPSLLCTLLNLQTLEMPSSYVDQSPE-DIWMMQK 618 (788)
Q Consensus 572 ~L~~L~L~~~~i~--~lp~~i~~L~~L~~L~L~~~~l~~lp~-~l~~L~~ 618 (788)
+|++|++++|.+. .+|..++++++|++|++++|.+..++. .++.+.+
T Consensus 129 ~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 178 (606)
T 3vq2_A 129 TLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRE 178 (606)
T ss_dssp TCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHH
T ss_pred CCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhc
Confidence 9999999888887 468888888899988888887766543 3444443
No 44
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.78 E-value=1.7e-18 Score=199.62 Aligned_cols=141 Identities=12% Similarity=0.053 Sum_probs=114.4
Q ss_pred eeEEEeecCccccccccccccccceEEecCCCCchhhhhhhhhhhcCCccccEEEecCCCCCCC-CccccCCCCccEEEe
Q 003890 500 VKWCYIMKDLIEFFSLEHSDIYLQSFLNHSSESDHLALIDCENFCEKFKHLRILNLGSAVLVQF-PPGLENLFHLKYLKL 578 (788)
Q Consensus 500 ~r~Ls~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l-p~~i~~L~~L~~L~L 578 (788)
.+++.+.++.....|..- .++|+.|.+.++... ..++..|.++++|++|+|++|.++.+ |..|+++++|++|++
T Consensus 33 ~~~l~ls~~~L~~ip~~~-~~~L~~L~Ls~N~i~----~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 107 (562)
T 3a79_B 33 ESMVDYSNRNLTHVPKDL-PPRTKALSLSQNSIS----ELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDV 107 (562)
T ss_dssp CCEEECTTSCCCSCCTTS-CTTCCEEECCSSCCC----CCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEEC
T ss_pred CcEEEcCCCCCccCCCCC-CCCcCEEECCCCCcc----ccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEEC
Confidence 378888877666555444 689999999998863 23457899999999999999999966 677999999999999
Q ss_pred cCCCCcccChhhcCCCCCcEEEccCCCCcccc--hhhhcccccceeeccCccCCCCCcCCcCccccc--ccccccc
Q 003890 579 NIPSLKCLPSLLCTLLNLQTLEMPSSYVDQSP--EDIWMMQKLMHLNFGSITLPAPPKNYSSSLKNL--IFISTLN 650 (788)
Q Consensus 579 ~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~lp--~~l~~L~~L~~L~l~~~~~~~~i~~~~~~l~~L--~~L~~~~ 650 (788)
++|.+..+|.. .+++|++|++++|.+..+| ..++++++|++|++++|.+.... ++.+++| ++|++..
T Consensus 108 s~N~l~~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~~---~~~l~~L~L~~L~L~~ 178 (562)
T 3a79_B 108 SHNRLQNISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLD---LLPVAHLHLSCILLDL 178 (562)
T ss_dssp TTSCCCEECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTTT---TGGGTTSCEEEEEEEE
T ss_pred CCCcCCccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccCc---hhhhhhceeeEEEeec
Confidence 99999999977 8999999999999888765 68999999999999998765421 2555555 5555543
No 45
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.77 E-value=9.7e-19 Score=201.23 Aligned_cols=149 Identities=21% Similarity=0.203 Sum_probs=120.9
Q ss_pred CCCceeEEEeecCcccccc---ccccccccceEEecCCCCchhhhhhhhhhhcCCccccEEEecCCCCCCCCcc-ccCCC
Q 003890 496 PPANVKWCYIMKDLIEFFS---LEHSDIYLQSFLNHSSESDHLALIDCENFCEKFKHLRILNLGSAVLVQFPPG-LENLF 571 (788)
Q Consensus 496 ~~~~~r~Ls~~~~~~~~~~---~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~-i~~L~ 571 (788)
.+.++++|.+.++...... +.. +++|+.|.+.++... ..++..|.++++|++|++++|.++.+|.. ++++.
T Consensus 24 ~~~~L~~L~Ls~n~l~~~~~~~~~~-l~~L~~L~Ls~n~i~----~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 98 (549)
T 2z81_A 24 LTAAMKSLDLSFNKITYIGHGDLRA-CANLQVLILKSSRIN----TIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLS 98 (549)
T ss_dssp CCTTCCEEECCSSCCCEECSSTTSS-CTTCCEEECTTSCCC----EECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCT
T ss_pred CCCCccEEECcCCccCccChhhhhc-CCcccEEECCCCCcC----ccChhhccccccCCEEECCCCccCccCHHHhccCC
Confidence 3468999999988765432 556 999999999998763 23457899999999999999999977765 99999
Q ss_pred CccEEEecCCCCcc--cChhhcCCCCCcEEEccCCC-Ccccch-hhhcccccceeeccCccCCCCCcCCcCccccccccc
Q 003890 572 HLKYLKLNIPSLKC--LPSLLCTLLNLQTLEMPSSY-VDQSPE-DIWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFIS 647 (788)
Q Consensus 572 ~L~~L~L~~~~i~~--lp~~i~~L~~L~~L~L~~~~-l~~lp~-~l~~L~~L~~L~l~~~~~~~~i~~~~~~l~~L~~L~ 647 (788)
+|++|++++|.+.. .|..++++++|++|++++|. +..+|. .+.++++|++|++++|.+...+|..++.+++|++|+
T Consensus 99 ~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ 178 (549)
T 2z81_A 99 SLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLT 178 (549)
T ss_dssp TCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEE
T ss_pred CCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEe
Confidence 99999999999985 46789999999999999995 788874 699999999999998876654555557766666665
Q ss_pred cc
Q 003890 648 TL 649 (788)
Q Consensus 648 ~~ 649 (788)
+.
T Consensus 179 l~ 180 (549)
T 2z81_A 179 LH 180 (549)
T ss_dssp EE
T ss_pred cc
Confidence 44
No 46
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.77 E-value=2.1e-18 Score=199.32 Aligned_cols=108 Identities=15% Similarity=0.135 Sum_probs=63.4
Q ss_pred CCceeEEEeecCcccccc---ccccccccceEEecCCCCchhhhhhhhhhhcCCccccEEEecCCCCCCCCc-cccCCCC
Q 003890 497 PANVKWCYIMKDLIEFFS---LEHSDIYLQSFLNHSSESDHLALIDCENFCEKFKHLRILNLGSAVLVQFPP-GLENLFH 572 (788)
Q Consensus 497 ~~~~r~Ls~~~~~~~~~~---~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~-~i~~L~~ 572 (788)
..++++|.+.++.....+ +.. +++|+.|.+.++... ..++..|.++++|++|++++|.++.+|. .++++.+
T Consensus 51 l~~L~~L~Ls~n~i~~i~~~~~~~-l~~L~~L~L~~n~l~----~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~ 125 (570)
T 2z63_A 51 FPELQVLDLSRCEIQTIEDGAYQS-LSHLSTLILTGNPIQ----SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKT 125 (570)
T ss_dssp CSSCCEEECTTCCCCEECTTTTTT-CTTCCEEECTTCCCC----EECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTT
T ss_pred CCCceEEECCCCcCCccCcccccC-chhCCEEeCcCCcCC----ccCHhhhcCccccccccccccccccCCCcccccccc
Confidence 345667777665443322 344 667777777666542 1223556666666666666666665553 4666666
Q ss_pred ccEEEecCCCCcc--cChhhcCCCCCcEEEccCCCCccc
Q 003890 573 LKYLKLNIPSLKC--LPSLLCTLLNLQTLEMPSSYVDQS 609 (788)
Q Consensus 573 L~~L~L~~~~i~~--lp~~i~~L~~L~~L~L~~~~l~~l 609 (788)
|++|++++|.+.. +|..++++++|++|++++|.+..+
T Consensus 126 L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~ 164 (570)
T 2z63_A 126 LKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 164 (570)
T ss_dssp CCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEE
T ss_pred ccEEecCCCccceecChhhhcccCCCCEEeCcCCcccee
Confidence 6666666666553 466666666666666666644433
No 47
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.77 E-value=3.7e-18 Score=178.90 Aligned_cols=148 Identities=18% Similarity=0.207 Sum_probs=62.4
Q ss_pred cccEEEecCCCCCCCC-ccccCCCCccEEEecCCCCccc-ChhhcCCCCCcEEEccCCC-Cccc-chhhhcccccceeec
Q 003890 549 HLRILNLGSAVLVQFP-PGLENLFHLKYLKLNIPSLKCL-PSLLCTLLNLQTLEMPSSY-VDQS-PEDIWMMQKLMHLNF 624 (788)
Q Consensus 549 ~L~~L~L~~~~l~~lp-~~i~~L~~L~~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~~-l~~l-p~~l~~L~~L~~L~l 624 (788)
+|+.|++++|.++.+| ..+..+.+|++|++++|.+..+ |..+.++++|++|++++|. +..+ |..+..+++|++|++
T Consensus 33 ~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l 112 (285)
T 1ozn_A 33 ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHL 112 (285)
T ss_dssp TCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEEC
T ss_pred CceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEEC
Confidence 4444444444444333 2344444444444444444433 3334444444444444442 4444 223444444444444
Q ss_pred cCccCCCCCcCCcCccccccccccccccccCc--cccCCCCCCCeEEEEccCCcChhcHHHhccCCCCCCEEEeec
Q 003890 625 GSITLPAPPKNYSSSLKNLIFISTLNPSSCTP--DILGRLPNVQTLRISGDLSCYHSGVSKSLCELHKLECLKLVN 698 (788)
Q Consensus 625 ~~~~~~~~i~~~~~~l~~L~~L~~~~~~~~~~--~~l~~L~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~L~~ 698 (788)
++|.+....+..|+.+++|++|++.++....+ ..++.+++|+.|+++++. .....+..+..+++|+.|+|++
T Consensus 113 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~--l~~~~~~~~~~l~~L~~L~l~~ 186 (285)
T 1ozn_A 113 DRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNR--ISSVPERAFRGLHSLDRLLLHQ 186 (285)
T ss_dssp TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC--CCEECTTTTTTCTTCCEEECCS
T ss_pred CCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCc--ccccCHHHhcCccccCEEECCC
Confidence 44433322222234444444444433221111 124445555555555553 1111222345555555555554
No 48
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.76 E-value=2.4e-18 Score=203.32 Aligned_cols=268 Identities=15% Similarity=0.101 Sum_probs=174.9
Q ss_pred CCCceeEEEeecCcccccc---ccccccccceEEecCCCCchhhhhhhhhhhcCCccccEEEecCCCCCCCCc-cccCCC
Q 003890 496 PPANVKWCYIMKDLIEFFS---LEHSDIYLQSFLNHSSESDHLALIDCENFCEKFKHLRILNLGSAVLVQFPP-GLENLF 571 (788)
Q Consensus 496 ~~~~~r~Ls~~~~~~~~~~---~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~-~i~~L~ 571 (788)
.+.++++|.+.++.....+ +.. +++|++|.+.++... ...+..|.++++|++|+|++|.++.+|. .|+++.
T Consensus 23 ~~~~l~~L~Ls~n~l~~~~~~~~~~-l~~L~~L~Ls~n~l~----~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~ 97 (680)
T 1ziw_A 23 LPTNITVLNLTHNQLRRLPAANFTR-YSQLTSLDVGFNTIS----KLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCT 97 (680)
T ss_dssp SCTTCSEEECCSSCCCCCCGGGGGG-GTTCSEEECCSSCCC----CCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred cCCCCcEEECCCCCCCCcCHHHHhC-CCcCcEEECCCCccC----ccCHHHHhcccCcCEEECCCCccCccChhhhccCC
Confidence 4568899999987655433 455 889999999887652 2345778888899999999888888876 588888
Q ss_pred CccEEEecCCCCcccC-hhhcCCCCCcEEEccCCCCcccc-hhhhcccccceeeccCccCCCCCcCCcC--ccccccccc
Q 003890 572 HLKYLKLNIPSLKCLP-SLLCTLLNLQTLEMPSSYVDQSP-EDIWMMQKLMHLNFGSITLPAPPKNYSS--SLKNLIFIS 647 (788)
Q Consensus 572 ~L~~L~L~~~~i~~lp-~~i~~L~~L~~L~L~~~~l~~lp-~~l~~L~~L~~L~l~~~~~~~~i~~~~~--~l~~L~~L~ 647 (788)
+|++|++++|.+..+| ..++++++|++|++++|.+...+ ..++++++|++|++++|.+....+..++ .+++|++|+
T Consensus 98 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~ 177 (680)
T 1ziw_A 98 NLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLE 177 (680)
T ss_dssp TCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEE
T ss_pred CCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEE
Confidence 8999999888888775 46788888888888888766654 4577888888888877755432222112 335666666
Q ss_pred ccccccc--C---------------------------------------------------ccccCCC--CCCCeEEEEc
Q 003890 648 TLNPSSC--T---------------------------------------------------PDILGRL--PNVQTLRISG 672 (788)
Q Consensus 648 ~~~~~~~--~---------------------------------------------------~~~l~~L--~~L~~L~l~~ 672 (788)
+.++... . +..+..+ ++|+.|++++
T Consensus 178 L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~ 257 (680)
T 1ziw_A 178 LSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSY 257 (680)
T ss_dssp CTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTT
T ss_pred CCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCC
Confidence 5532111 0 1112222 2266666666
Q ss_pred cCCcChhcHHHhccCCCCCCEEEeecCCCCCcccccccCCCccccccc--cccccc-----cccCc----ccCCCCCcce
Q 003890 673 DLSCYHSGVSKSLCELHKLECLKLVNERKPSRMVLYEYQFPPTDMARI--LSQLIR-----QEFVE----SEMSLPLLQL 741 (788)
Q Consensus 673 ~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~l~~~~~L~~L--~~~l~~-----~~lp~----~l~~l~~L~~ 741 (788)
+. .....+..+..+++|+.|+|+++.... .....+..+++|+.| .++..+ ..+|. .+..+++|++
T Consensus 258 n~--l~~~~~~~~~~l~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~ 333 (680)
T 1ziw_A 258 NN--LNVVGNDSFAWLPQLEYFFLEYNNIQH--LFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEH 333 (680)
T ss_dssp SC--CCEECTTTTTTCTTCCEEECCSCCBSE--ECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCE
T ss_pred CC--cCccCcccccCcccccEeeCCCCccCc--cChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCE
Confidence 54 233334556667777777777543321 234456666777777 222101 13343 5667888888
Q ss_pred EEEeccccccccccCCcccccccccCCeeEecccC
Q 003890 742 LDLEESDEEDDERSDILEILQDINDFVHESEEAID 776 (788)
Q Consensus 742 L~L~~~~l~~~~~~~~l~~l~~L~~L~~L~L~~~~ 776 (788)
|++++|.+... ....+.++++|++|++++|.
T Consensus 334 L~l~~n~l~~~----~~~~~~~l~~L~~L~Ls~n~ 364 (680)
T 1ziw_A 334 LNMEDNDIPGI----KSNMFTGLINLKYLSLSNSF 364 (680)
T ss_dssp EECCSCCBCCC----CTTTTTTCTTCCEEECTTCB
T ss_pred EECCCCccCCC----ChhHhccccCCcEEECCCCc
Confidence 88888888765 44557888888888888763
No 49
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.76 E-value=1.2e-17 Score=201.73 Aligned_cols=261 Identities=13% Similarity=0.056 Sum_probs=188.9
Q ss_pred CCCceeEEEeecCc-cccc-c--ccccccccceEEecCCCCchhhhhhhhhhhcCCccccEEEecCCCCCC-CCcc--cc
Q 003890 496 PPANVKWCYIMKDL-IEFF-S--LEHSDIYLQSFLNHSSESDHLALIDCENFCEKFKHLRILNLGSAVLVQ-FPPG--LE 568 (788)
Q Consensus 496 ~~~~~r~Ls~~~~~-~~~~-~--~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~-lp~~--i~ 568 (788)
...+++.|.+.++. .... + +.. +++|++|.+.++... ...|..|.++++|++|+|++|.+.. +|.. ++
T Consensus 46 ~l~~L~~LdLs~n~~~~~i~~~~f~~-L~~L~~L~Ls~N~l~----~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~ 120 (844)
T 3j0a_A 46 FLEQLQLLELGSQYTPLTIDKEAFRN-LPNLRILDLGSSKIY----FLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFR 120 (844)
T ss_dssp SCCSCSEEEECTTCCCCEECTTTTSS-CTTCCEEECTTCCCC----EECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCS
T ss_pred ccccCeEEeCCCCCCccccCHHHhcC-CCCCCEEECCCCcCc----ccCHhHccCCcccCEeeCcCCCCCcccccCcccc
Confidence 45678999998773 2222 2 555 899999999988763 2345889999999999999999874 5554 89
Q ss_pred CCCCccEEEecCCCCccc--ChhhcCCCCCcEEEccCCCCccc-chhhhcc--cccceeeccCccCCCCCcCCcCcc---
Q 003890 569 NLFHLKYLKLNIPSLKCL--PSLLCTLLNLQTLEMPSSYVDQS-PEDIWMM--QKLMHLNFGSITLPAPPKNYSSSL--- 640 (788)
Q Consensus 569 ~L~~L~~L~L~~~~i~~l--p~~i~~L~~L~~L~L~~~~l~~l-p~~l~~L--~~L~~L~l~~~~~~~~i~~~~~~l--- 640 (788)
++++|++|++++|.+..+ +..++++++|++|++++|.+..+ |..+..+ ++|+.|++++|.+....+..++.+
T Consensus 121 ~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~ 200 (844)
T 3j0a_A 121 NLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNP 200 (844)
T ss_dssp SCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCT
T ss_pred ccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCc
Confidence 999999999999998866 35689999999999999976654 4556665 666666666554332222111221
Q ss_pred -----------------------------------------------------------------ccccccccccccc--
Q 003890 641 -----------------------------------------------------------------KNLIFISTLNPSS-- 653 (788)
Q Consensus 641 -----------------------------------------------------------------~~L~~L~~~~~~~-- 653 (788)
++|+.|++.++..
T Consensus 201 ~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~ 280 (844)
T 3j0a_A 201 FRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFS 280 (844)
T ss_dssp TTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCE
T ss_pred cccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccc
Confidence 2344444443221
Q ss_pred cCccccCCCCCCCeEEEEccCCcChhcHHHhccCCCCCCEEEeecCCCCCcccccccCCCccccccc---ccccccccc-
Q 003890 654 CTPDILGRLPNVQTLRISGDLSCYHSGVSKSLCELHKLECLKLVNERKPSRMVLYEYQFPPTDMARI---LSQLIRQEF- 729 (788)
Q Consensus 654 ~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~l~~~~~L~~L---~~~l~~~~l- 729 (788)
..+..+..+++|+.|+++++. .....+..+.++++|+.|+|+++.... .....+..+++|+.| .|.+ ..+
T Consensus 281 ~~~~~~~~l~~L~~L~L~~n~--i~~~~~~~~~~l~~L~~L~Ls~N~l~~--~~~~~~~~l~~L~~L~L~~N~i--~~~~ 354 (844)
T 3j0a_A 281 LNSRVFETLKDLKVLNLAYNK--INKIADEAFYGLDNLQVLNLSYNLLGE--LYSSNFYGLPKVAYIDLQKNHI--AIIQ 354 (844)
T ss_dssp ECSCCSSSCCCCCEEEEESCC--CCEECTTTTTTCSSCCEEEEESCCCSC--CCSCSCSSCTTCCEEECCSCCC--CCCC
T ss_pred cChhhhhcCCCCCEEECCCCc--CCCCChHHhcCCCCCCEEECCCCCCCc--cCHHHhcCCCCCCEEECCCCCC--CccC
Confidence 123447889999999999997 555556788999999999999765431 345678889999999 5666 444
Q ss_pred CcccCCCCCcceEEEeccccccccccCCcccccccccCCeeEecccC
Q 003890 730 VESEMSLPLLQLLDLEESDEEDDERSDILEILQDINDFVHESEEAID 776 (788)
Q Consensus 730 p~~l~~l~~L~~L~L~~~~l~~~~~~~~l~~l~~L~~L~~L~L~~~~ 776 (788)
|..+..+++|++|+|++|.+... + .+|+|+.|++++|.
T Consensus 355 ~~~~~~l~~L~~L~Ls~N~l~~i------~---~~~~L~~L~l~~N~ 392 (844)
T 3j0a_A 355 DQTFKFLEKLQTLDLRDNALTTI------H---FIPSIPDIFLSGNK 392 (844)
T ss_dssp SSCSCSCCCCCEEEEETCCSCCC------S---SCCSCSEEEEESCC
T ss_pred hhhhcCCCCCCEEECCCCCCCcc------c---CCCCcchhccCCCC
Confidence 44678899999999999998743 2 27888888888774
No 50
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.76 E-value=3.4e-19 Score=189.40 Aligned_cols=239 Identities=14% Similarity=0.079 Sum_probs=180.8
Q ss_pred ccccceEEecCCCCchhhhhhhhhhhcCCccccEEEecCCCCC--CCCcccc-------CCCCccEEEecCCCCc-ccCh
Q 003890 519 DIYLQSFLNHSSESDHLALIDCENFCEKFKHLRILNLGSAVLV--QFPPGLE-------NLFHLKYLKLNIPSLK-CLPS 588 (788)
Q Consensus 519 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~--~lp~~i~-------~L~~L~~L~L~~~~i~-~lp~ 588 (788)
.++|+.|.+.++.. .+ |..+... |+.|+|++|.+. .+|..+. ++.+|++|++++|.+. .+|.
T Consensus 42 ~~~L~~l~l~~n~l--~~----p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 113 (312)
T 1wwl_A 42 GRSLEYLLKRVDTE--AD----LGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPP 113 (312)
T ss_dssp EEECTTHHHHCCTT--CC----CHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCC
T ss_pred CCCceeEeeccccc--cc----HHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHH
Confidence 56677777776665 22 2222222 888899998885 5666665 7899999999999987 6787
Q ss_pred hh--cCCCCCcEEEccCCCCcccchhhhcc-----cccceeeccCccCCCCCcCCcCcccccccccccccccc----Ccc
Q 003890 589 LL--CTLLNLQTLEMPSSYVDQSPEDIWMM-----QKLMHLNFGSITLPAPPKNYSSSLKNLIFISTLNPSSC----TPD 657 (788)
Q Consensus 589 ~i--~~L~~L~~L~L~~~~l~~lp~~l~~L-----~~L~~L~l~~~~~~~~i~~~~~~l~~L~~L~~~~~~~~----~~~ 657 (788)
.+ +.+++|++|++++|.+..+|..+..+ ++|++|++++|.+....+..|+.+++|++|++.++... .+.
T Consensus 114 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 193 (312)
T 1wwl_A 114 PLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLIS 193 (312)
T ss_dssp CSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHH
T ss_pred HHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHH
Confidence 76 88999999999999888888778877 89999999998776555566789999999998865421 233
Q ss_pred cc--CCCCCCCeEEEEccCCcChhcHH-HhccCCCCCCEEEeecCCCCCcccccccCCCccccccc---cccccccccCc
Q 003890 658 IL--GRLPNVQTLRISGDLSCYHSGVS-KSLCELHKLECLKLVNERKPSRMVLYEYQFPPTDMARI---LSQLIRQEFVE 731 (788)
Q Consensus 658 ~l--~~L~~L~~L~l~~~~~~~~~~~~-~~l~~l~~L~~L~L~~~~~~~~~~~~~~l~~~~~L~~L---~~~l~~~~lp~ 731 (788)
.+ +.+++|+.|++++|.-......+ ..+..+++|+.|+|+++..... .....+..+++|++| .|.+ ..+|.
T Consensus 194 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~~l~~L~~L~Ls~N~l--~~ip~ 270 (312)
T 1wwl_A 194 ALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDA-AGAPSCDWPSQLNSLNLSFTGL--KQVPK 270 (312)
T ss_dssp HSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSS-CCCSCCCCCTTCCEEECTTSCC--SSCCS
T ss_pred HHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcc-cchhhhhhcCCCCEEECCCCcc--Chhhh
Confidence 44 88999999999999722222333 3456789999999997654411 112455567899999 6778 68888
Q ss_pred ccCCCCCcceEEEeccccccccccCCcccccccccCCeeEecccC
Q 003890 732 SEMSLPLLQLLDLEESDEEDDERSDILEILQDINDFVHESEEAID 776 (788)
Q Consensus 732 ~l~~l~~L~~L~L~~~~l~~~~~~~~l~~l~~L~~L~~L~L~~~~ 776 (788)
++. ++|++|+|++|++.. +|.+..+++|++|+|++++
T Consensus 271 ~~~--~~L~~L~Ls~N~l~~------~p~~~~l~~L~~L~L~~N~ 307 (312)
T 1wwl_A 271 GLP--AKLSVLDLSYNRLDR------NPSPDELPQVGNLSLKGNP 307 (312)
T ss_dssp SCC--SEEEEEECCSSCCCS------CCCTTTSCEEEEEECTTCT
T ss_pred hcc--CCceEEECCCCCCCC------ChhHhhCCCCCEEeccCCC
Confidence 776 899999999999985 4568999999999999986
No 51
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.75 E-value=1.3e-17 Score=186.52 Aligned_cols=245 Identities=14% Similarity=0.073 Sum_probs=178.2
Q ss_pred CCceeEEEeecCcccccc-ccccccccceEEecCCCCchhhhhhhhhhhcCCccccEEEecCCCCCCCCccccCCCCccE
Q 003890 497 PANVKWCYIMKDLIEFFS-LEHSDIYLQSFLNHSSESDHLALIDCENFCEKFKHLRILNLGSAVLVQFPPGLENLFHLKY 575 (788)
Q Consensus 497 ~~~~r~Ls~~~~~~~~~~-~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~i~~L~~L~~ 575 (788)
..++++|.+.++.....+ ... +++|+.|.+.++.... + .+..+++|++|++++|.++.+| ++++++|++
T Consensus 41 l~~L~~L~Ls~n~l~~~~~l~~-l~~L~~L~Ls~n~l~~-~------~~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~ 110 (457)
T 3bz5_A 41 LATLTSLDCHNSSITDMTGIEK-LTGLTKLICTSNNITT-L------DLSQNTNLTYLACDSNKLTNLD--VTPLTKLTY 110 (457)
T ss_dssp HTTCCEEECCSSCCCCCTTGGG-CTTCSEEECCSSCCSC-C------CCTTCTTCSEEECCSSCCSCCC--CTTCTTCCE
T ss_pred cCCCCEEEccCCCcccChhhcc-cCCCCEEEccCCcCCe-E------ccccCCCCCEEECcCCCCceee--cCCCCcCCE
Confidence 456788888877655444 455 8889999988887532 1 2778889999999999888775 888899999
Q ss_pred EEecCCCCcccChhhcCCCCCcEEEccCCCCcccchhhhcccccceeeccCccCCCCCcCCcCccccccccccccccccC
Q 003890 576 LKLNIPSLKCLPSLLCTLLNLQTLEMPSSYVDQSPEDIWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFISTLNPSSCT 655 (788)
Q Consensus 576 L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~lp~~l~~L~~L~~L~l~~~~~~~~i~~~~~~l~~L~~L~~~~~~~~~ 655 (788)
|++++|.+..+| ++++++|++|++++|.+..+| ++++++|++|++++|.....+ .++.+++|++|++.++....
T Consensus 111 L~L~~N~l~~l~--~~~l~~L~~L~l~~N~l~~l~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~ 184 (457)
T 3bz5_A 111 LNCDTNKLTKLD--VSQNPLLTYLNCARNTLTEID--VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITE 184 (457)
T ss_dssp EECCSSCCSCCC--CTTCTTCCEEECTTSCCSCCC--CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCC
T ss_pred EECCCCcCCeec--CCCCCcCCEEECCCCccceec--cccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCccce
Confidence 999999888876 788889999999999888775 788889999999888544333 24788888888888765554
Q ss_pred ccccCCCCCCCeEEEEccCCcChhcHHHhccCCCCCCEEEeecCCCCCcccccccCCCccccccc---cccccccccCcc
Q 003890 656 PDILGRLPNVQTLRISGDLSCYHSGVSKSLCELHKLECLKLVNERKPSRMVLYEYQFPPTDMARI---LSQLIRQEFVES 732 (788)
Q Consensus 656 ~~~l~~L~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~l~~~~~L~~L---~~~l~~~~lp~~ 732 (788)
++ ++.+++|+.|+++++. .... .+..+++|+.|+++++... . ++ +..+++|+.| .+.+ ..+|
T Consensus 185 l~-l~~l~~L~~L~l~~N~---l~~~--~l~~l~~L~~L~Ls~N~l~---~-ip-~~~l~~L~~L~l~~N~l--~~~~-- 249 (457)
T 3bz5_A 185 LD-VSQNKLLNRLNCDTNN---ITKL--DLNQNIQLTFLDCSSNKLT---E-ID-VTPLTQLTYFDCSVNPL--TELD-- 249 (457)
T ss_dssp CC-CTTCTTCCEEECCSSC---CSCC--CCTTCTTCSEEECCSSCCS---C-CC-CTTCTTCSEEECCSSCC--SCCC--
T ss_pred ec-cccCCCCCEEECcCCc---CCee--ccccCCCCCEEECcCCccc---c-cC-ccccCCCCEEEeeCCcC--CCcC--
Confidence 54 7888889999998886 2222 3778889999999876544 2 22 6677888888 5666 4444
Q ss_pred cCCCCCcceE----------EEeccccccccccCCcccccccccCCeeEecccCch
Q 003890 733 EMSLPLLQLL----------DLEESDEEDDERSDILEILQDINDFVHESEEAIDTF 778 (788)
Q Consensus 733 l~~l~~L~~L----------~L~~~~l~~~~~~~~l~~l~~L~~L~~L~L~~~~~l 778 (788)
++.+++|+.| ++++|..... +| ++.+++|+.|++++|..+
T Consensus 250 ~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~-----~~-~~~l~~L~~L~Ls~n~~l 299 (457)
T 3bz5_A 250 VSTLSKLTTLHCIQTDLLEIDLTHNTQLIY-----FQ-AEGCRKIKELDVTHNTQL 299 (457)
T ss_dssp CTTCTTCCEEECTTCCCSCCCCTTCTTCCE-----EE-CTTCTTCCCCCCTTCTTC
T ss_pred HHHCCCCCEEeccCCCCCEEECCCCccCCc-----cc-ccccccCCEEECCCCccc
Confidence 3445555444 4444443332 33 567899999999998643
No 52
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.75 E-value=2.8e-17 Score=183.83 Aligned_cols=252 Identities=13% Similarity=0.046 Sum_probs=173.2
Q ss_pred CCceeEEEeecCccccccccccccccceEEecCCCCchhhhhhhhhhhcCCccccEEEecCCCCCCCCccccCCCCccEE
Q 003890 497 PANVKWCYIMKDLIEFFSLEHSDIYLQSFLNHSSESDHLALIDCENFCEKFKHLRILNLGSAVLVQFPPGLENLFHLKYL 576 (788)
Q Consensus 497 ~~~~r~Ls~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~i~~L~~L~~L 576 (788)
..++++|.+..+.....+... +++|+.|.+.++.... + .+..+++|++|++++|.++.+| ++.+++|++|
T Consensus 63 l~~L~~L~Ls~n~l~~~~~~~-l~~L~~L~Ls~N~l~~-~------~~~~l~~L~~L~L~~N~l~~l~--~~~l~~L~~L 132 (457)
T 3bz5_A 63 LTGLTKLICTSNNITTLDLSQ-NTNLTYLACDSNKLTN-L------DVTPLTKLTYLNCDTNKLTKLD--VSQNPLLTYL 132 (457)
T ss_dssp CTTCSEEECCSSCCSCCCCTT-CTTCSEEECCSSCCSC-C------CCTTCTTCCEEECCSSCCSCCC--CTTCTTCCEE
T ss_pred cCCCCEEEccCCcCCeEcccc-CCCCCEEECcCCCCce-e------ecCCCCcCCEEECCCCcCCeec--CCCCCcCCEE
Confidence 467888888877766555556 8889999988877532 1 2778889999999999888875 8888899999
Q ss_pred EecCCCCcccChhhcCCCCCcEEEccCC-CCcccchhhhcccccceeeccCccCCCCCcCCcCccccccccccccccccC
Q 003890 577 KLNIPSLKCLPSLLCTLLNLQTLEMPSS-YVDQSPEDIWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFISTLNPSSCT 655 (788)
Q Consensus 577 ~L~~~~i~~lp~~i~~L~~L~~L~L~~~-~l~~lp~~l~~L~~L~~L~l~~~~~~~~i~~~~~~l~~L~~L~~~~~~~~~ 655 (788)
++++|.+..+| ++++++|++|++++| .+..+ .+..+++|++|++++|.+.. +| ++.+++|+.|++.++....
T Consensus 133 ~l~~N~l~~l~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~-l~--l~~l~~L~~L~l~~N~l~~ 205 (457)
T 3bz5_A 133 NCARNTLTEID--VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITE-LD--VSQNKLLNRLNCDTNNITK 205 (457)
T ss_dssp ECTTSCCSCCC--CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCC-CC--CTTCTTCCEEECCSSCCSC
T ss_pred ECCCCccceec--cccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCccce-ec--cccCCCCCEEECcCCcCCe
Confidence 99998888875 788889999999888 56666 37788899999998886654 33 4788888888887665444
Q ss_pred ccccCCCCCCCeEEEEccCCcChhcHHHhccCCCCCCEEEeecCCCCCcccccccCCCcc-------ccccc---ccccc
Q 003890 656 PDILGRLPNVQTLRISGDLSCYHSGVSKSLCELHKLECLKLVNERKPSRMVLYEYQFPPT-------DMARI---LSQLI 725 (788)
Q Consensus 656 ~~~l~~L~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~l~~~~-------~L~~L---~~~l~ 725 (788)
+ .++.+++|+.|+++++. ...++ +..+++|+.|+++++.... ..+..+..+. +|+.| .+.+
T Consensus 206 ~-~l~~l~~L~~L~Ls~N~---l~~ip--~~~l~~L~~L~l~~N~l~~--~~~~~l~~L~~L~l~~n~L~~L~l~~n~~- 276 (457)
T 3bz5_A 206 L-DLNQNIQLTFLDCSSNK---LTEID--VTPLTQLTYFDCSVNPLTE--LDVSTLSKLTTLHCIQTDLLEIDLTHNTQ- 276 (457)
T ss_dssp C-CCTTCTTCSEEECCSSC---CSCCC--CTTCTTCSEEECCSSCCSC--CCCTTCTTCCEEECTTCCCSCCCCTTCTT-
T ss_pred e-ccccCCCCCEEECcCCc---ccccC--ccccCCCCEEEeeCCcCCC--cCHHHCCCCCEEeccCCCCCEEECCCCcc-
Confidence 4 47888889999998886 22333 7788889999998654431 1222222222 33444 2222
Q ss_pred ccccCcccCCCCCcceEEEeccccccccccC--Ccc--cccccccCCeeEecccC
Q 003890 726 RQEFVESEMSLPLLQLLDLEESDEEDDERSD--ILE--ILQDINDFVHESEEAID 776 (788)
Q Consensus 726 ~~~lp~~l~~l~~L~~L~L~~~~l~~~~~~~--~l~--~l~~L~~L~~L~L~~~~ 776 (788)
...+| ++.+++|+.|+|++|...+..++. .+. .++.+++|++|++++|.
T Consensus 277 ~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~ 329 (457)
T 3bz5_A 277 LIYFQ--AEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTE 329 (457)
T ss_dssp CCEEE--CTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCC
T ss_pred CCccc--ccccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCCc
Confidence 13344 456788999999998876531110 000 23445666666666553
No 53
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.75 E-value=1e-17 Score=197.97 Aligned_cols=243 Identities=14% Similarity=0.108 Sum_probs=171.0
Q ss_pred ccccceEEecCCCCchhhhhhhhhhhcCCccccEEEecCCCCCCC-CccccCCCCccEEEecCCCCcccCh-hhcCCCCC
Q 003890 519 DIYLQSFLNHSSESDHLALIDCENFCEKFKHLRILNLGSAVLVQF-PPGLENLFHLKYLKLNIPSLKCLPS-LLCTLLNL 596 (788)
Q Consensus 519 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l-p~~i~~L~~L~~L~L~~~~i~~lp~-~i~~L~~L 596 (788)
.++++.|.+.++... .+++..|.++++|++|+|++|.+..+ |..++++++|++|++++|.+..+|. .++++++|
T Consensus 24 ~~~l~~L~Ls~n~l~----~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L 99 (680)
T 1ziw_A 24 PTNITVLNLTHNQLR----RLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNL 99 (680)
T ss_dssp CTTCSEEECCSSCCC----CCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred CCCCcEEECCCCCCC----CcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCC
Confidence 578999999988752 23457899999999999999999865 6778999999999999999999987 58999999
Q ss_pred cEEEccCCCCcccch-hhhcccccceeeccCccCCCCCcCCcCccccccccccccccccCc--cc--cCCCCCCCeEEEE
Q 003890 597 QTLEMPSSYVDQSPE-DIWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFISTLNPSSCTP--DI--LGRLPNVQTLRIS 671 (788)
Q Consensus 597 ~~L~L~~~~l~~lp~-~l~~L~~L~~L~l~~~~~~~~i~~~~~~l~~L~~L~~~~~~~~~~--~~--l~~L~~L~~L~l~ 671 (788)
++|++++|.+..+|. .++++++|++|++++|.+....+..|+++++|++|++.++..... .. ...+++|+.|+++
T Consensus 100 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~ 179 (680)
T 1ziw_A 100 TELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELS 179 (680)
T ss_dssp SEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECT
T ss_pred CEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECC
Confidence 999999998888874 699999999999999987666566679999999999886543322 22 2356788999998
Q ss_pred ccCCcChhcHHHhccCC---------------------------CCCCEEEeecCCCCCcccccccCCCcc--ccccc--
Q 003890 672 GDLSCYHSGVSKSLCEL---------------------------HKLECLKLVNERKPSRMVLYEYQFPPT--DMARI-- 720 (788)
Q Consensus 672 ~~~~~~~~~~~~~l~~l---------------------------~~L~~L~L~~~~~~~~~~~~~~l~~~~--~L~~L-- 720 (788)
++. .....+..+..+ ++|+.|+++++.... .....+..++ +|++|
T Consensus 180 ~n~--l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~--~~~~~~~~l~~~~L~~L~L 255 (680)
T 1ziw_A 180 SNQ--IKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLST--TSNTTFLGLKWTNLTMLDL 255 (680)
T ss_dssp TCC--CCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCE--ECTTTTGGGGGSCCCEEEC
T ss_pred CCc--ccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccc--cChhHhhccCcCCCCEEEC
Confidence 875 222222222222 455666665433221 1233344443 37776
Q ss_pred -cccccccccCcccCCCCCcceEEEeccccccccccCCcccccccccCCeeEecc
Q 003890 721 -LSQLIRQEFVESEMSLPLLQLLDLEESDEEDDERSDILEILQDINDFVHESEEA 774 (788)
Q Consensus 721 -~~~l~~~~lp~~l~~l~~L~~L~L~~~~l~~~~~~~~l~~l~~L~~L~~L~L~~ 774 (788)
.+.+ ....|.++..+++|++|+|++|.+... ....++++++|++|++++
T Consensus 256 s~n~l-~~~~~~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~ 305 (680)
T 1ziw_A 256 SYNNL-NVVGNDSFAWLPQLEYFFLEYNNIQHL----FSHSLHGLFNVRYLNLKR 305 (680)
T ss_dssp TTSCC-CEECTTTTTTCTTCCEEECCSCCBSEE----CTTTTTTCTTCCEEECTT
T ss_pred CCCCc-CccCcccccCcccccEeeCCCCccCcc----ChhhhcCCCCccEEeccc
Confidence 4444 122345666777777777777776654 333455555555555543
No 54
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.74 E-value=4.6e-19 Score=188.83 Aligned_cols=237 Identities=14% Similarity=0.087 Sum_probs=172.1
Q ss_pred ccccceEEecCCCCchhhhhhhhhhhcCCccccEEEecCCCCCCCCccccCCCCccEEEecCCCCcccChhhcCCCCCcE
Q 003890 519 DIYLQSFLNHSSESDHLALIDCENFCEKFKHLRILNLGSAVLVQFPPGLENLFHLKYLKLNIPSLKCLPSLLCTLLNLQT 598 (788)
Q Consensus 519 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~lp~~i~~L~~L~~ 598 (788)
+++|+.|.+.++... ..++..|..+++|++|+|++|.+...+. +..+++|++|++++|.+..+| .+++|++
T Consensus 33 ~~~L~~L~L~~n~l~----~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~l~~l~----~~~~L~~ 103 (317)
T 3o53_A 33 AWNVKELDLSGNPLS----QISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELL----VGPSIET 103 (317)
T ss_dssp GGGCSEEECTTSCCC----CCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSSEEEEEE----ECTTCCE
T ss_pred CCCCCEEECcCCccC----cCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCCcccccc----CCCCcCE
Confidence 678888888887753 2334678888888999998888876554 888888889988888887776 3378888
Q ss_pred EEccCCCCcccchhhhcccccceeeccCccCCCCCcCCcCccccccccccccccccC--cccc-CCCCCCCeEEEEccCC
Q 003890 599 LEMPSSYVDQSPEDIWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFISTLNPSSCT--PDIL-GRLPNVQTLRISGDLS 675 (788)
Q Consensus 599 L~L~~~~l~~lp~~l~~L~~L~~L~l~~~~~~~~i~~~~~~l~~L~~L~~~~~~~~~--~~~l-~~L~~L~~L~l~~~~~ 675 (788)
|++++|.+..+|.. .+++|++|++++|.+....+..|+.+++|++|++.++.... +..+ ..+++|+.|++++|.
T Consensus 104 L~l~~n~l~~~~~~--~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~- 180 (317)
T 3o53_A 104 LHAANNNISRVSCS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF- 180 (317)
T ss_dssp EECCSSCCSEEEEC--CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSC-
T ss_pred EECCCCccCCcCcc--ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCc-
Confidence 88888888777643 46788888888887765444456788888888887654332 2334 467888888888886
Q ss_pred cChhcHHHhccCCCCCCEEEeecCCCCCcccccccCCCccccccc---cccccccccCcccCCCCCcceEEEeccccccc
Q 003890 676 CYHSGVSKSLCELHKLECLKLVNERKPSRMVLYEYQFPPTDMARI---LSQLIRQEFVESEMSLPLLQLLDLEESDEEDD 752 (788)
Q Consensus 676 ~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~l~~~~~L~~L---~~~l~~~~lp~~l~~l~~L~~L~L~~~~l~~~ 752 (788)
.... .....+++|+.|+|+++... .....+..+++|+.| .|.+ ..+|..+..+++|+.|+|++|++...
T Consensus 181 --l~~~-~~~~~l~~L~~L~Ls~N~l~---~l~~~~~~l~~L~~L~L~~N~l--~~l~~~~~~l~~L~~L~l~~N~~~~~ 252 (317)
T 3o53_A 181 --IYDV-KGQVVFAKLKTLDLSSNKLA---FMGPEFQSAAGVTWISLRNNKL--VLIEKALRFSQNLEHFDLRGNGFHCG 252 (317)
T ss_dssp --CCEE-ECCCCCTTCCEEECCSSCCC---EECGGGGGGTTCSEEECTTSCC--CEECTTCCCCTTCCEEECTTCCCBHH
T ss_pred --Cccc-ccccccccCCEEECCCCcCC---cchhhhcccCcccEEECcCCcc--cchhhHhhcCCCCCEEEccCCCccCc
Confidence 2222 23334788888888876554 344456777888888 6677 67888888888999999999988732
Q ss_pred cccCCcccccccccCCeeEecccCch
Q 003890 753 ERSDILEILQDINDFVHESEEAIDTF 778 (788)
Q Consensus 753 ~~~~~l~~l~~L~~L~~L~L~~~~~l 778 (788)
. ....++.+++|+.|+++++..+
T Consensus 253 ~---~~~~~~~~~~L~~l~l~~~~~l 275 (317)
T 3o53_A 253 T---LRDFFSKNQRVQTVAKQTVKKL 275 (317)
T ss_dssp H---HHHHHHTCHHHHHHHHHHHHHH
T ss_pred C---HHHHHhccccceEEECCCchhc
Confidence 0 3345778888888888765443
No 55
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.74 E-value=1.6e-17 Score=173.99 Aligned_cols=193 Identities=17% Similarity=0.128 Sum_probs=145.1
Q ss_pred eEEEeecCccccccccccccccceEEecCCCCchhhhhhhhhhhcCCccccEEEecCCCCCCC-CccccCCCCccEEEec
Q 003890 501 KWCYIMKDLIEFFSLEHSDIYLQSFLNHSSESDHLALIDCENFCEKFKHLRILNLGSAVLVQF-PPGLENLFHLKYLKLN 579 (788)
Q Consensus 501 r~Ls~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l-p~~i~~L~~L~~L~L~ 579 (788)
+.+..........+..- .++|+.|.+.++... .+++..|..+++|++|++++|.++.+ |..+..+++|++|+++
T Consensus 14 ~~~~c~~~~l~~ip~~~-~~~l~~L~l~~n~i~----~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 88 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPVGI-PAASQRIFLHGNRIS----HVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLS 88 (285)
T ss_dssp CEEECCSSCCSSCCTTC-CTTCSEEECTTSCCC----EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred eEEEcCcCCcccCCcCC-CCCceEEEeeCCcCC----ccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCC
Confidence 34455544444444333 678889988887752 23346788899999999999988865 6778889999999999
Q ss_pred CCC-Cccc-ChhhcCCCCCcEEEccCCCCcccc-hhhhcccccceeeccCccCCCCCcCCcCccccccccccccccccCc
Q 003890 580 IPS-LKCL-PSLLCTLLNLQTLEMPSSYVDQSP-EDIWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFISTLNPSSCTP 656 (788)
Q Consensus 580 ~~~-i~~l-p~~i~~L~~L~~L~L~~~~l~~lp-~~l~~L~~L~~L~l~~~~~~~~i~~~~~~l~~L~~L~~~~~~~~~~ 656 (788)
+|. +..+ |..+..+++|++|++++|.+..++ ..+.++++|++|++++|.+....+..|+.+++|++|++.++....+
T Consensus 89 ~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 168 (285)
T 1ozn_A 89 DNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSV 168 (285)
T ss_dssp SCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEE
T ss_pred CCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCccccc
Confidence 986 8877 667888999999999999887774 4688899999999988876644444468888999998886544333
Q ss_pred c--ccCCCCCCCeEEEEccCCcChhcHHHhccCCCCCCEEEeecCC
Q 003890 657 D--ILGRLPNVQTLRISGDLSCYHSGVSKSLCELHKLECLKLVNER 700 (788)
Q Consensus 657 ~--~l~~L~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~ 700 (788)
. .+..+++|+.|+++++. .....+..+..+++|+.|+|+++.
T Consensus 169 ~~~~~~~l~~L~~L~l~~n~--l~~~~~~~~~~l~~L~~L~l~~n~ 212 (285)
T 1ozn_A 169 PERAFRGLHSLDRLLLHQNR--VAHVHPHAFRDLGRLMTLYLFANN 212 (285)
T ss_dssp CTTTTTTCTTCCEEECCSSC--CCEECTTTTTTCTTCCEEECCSSC
T ss_pred CHHHhcCccccCEEECCCCc--ccccCHhHccCcccccEeeCCCCc
Confidence 2 37888999999999887 444456778888899999998654
No 56
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.74 E-value=7.2e-18 Score=193.95 Aligned_cols=106 Identities=15% Similarity=0.099 Sum_probs=63.2
Q ss_pred CCceeEEEeecCcccccc---ccccccccceEEecCCCCchhhhhhhhhhhcCCccccEEEecCCCCCC--CCccccCCC
Q 003890 497 PANVKWCYIMKDLIEFFS---LEHSDIYLQSFLNHSSESDHLALIDCENFCEKFKHLRILNLGSAVLVQ--FPPGLENLF 571 (788)
Q Consensus 497 ~~~~r~Ls~~~~~~~~~~---~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~--lp~~i~~L~ 571 (788)
..++++|.+.++.....+ +.. +++|+.|.+.++... ..++..|.++++|++|++++|.++. .|..++++.
T Consensus 49 l~~L~~L~Ls~n~i~~~~~~~~~~-l~~L~~L~Ls~n~l~----~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~ 123 (549)
T 2z81_A 49 CANLQVLILKSSRINTIEGDAFYS-LGSLEHLDLSDNHLS----SLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLT 123 (549)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTT-CTTCCEEECTTSCCC----SCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCT
T ss_pred CCcccEEECCCCCcCccChhhccc-cccCCEEECCCCccC----ccCHHHhccCCCCcEEECCCCcccccchhhhhhccC
Confidence 346677777766544332 344 677777777776542 1233556777777777777777663 345666666
Q ss_pred CccEEEecCCC-CcccC-hhhcCCCCCcEEEccCCCCc
Q 003890 572 HLKYLKLNIPS-LKCLP-SLLCTLLNLQTLEMPSSYVD 607 (788)
Q Consensus 572 ~L~~L~L~~~~-i~~lp-~~i~~L~~L~~L~L~~~~l~ 607 (788)
+|++|++++|. +..+| ..+.++++|++|++++|.+.
T Consensus 124 ~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~ 161 (549)
T 2z81_A 124 NLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLR 161 (549)
T ss_dssp TCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCC
T ss_pred CccEEECCCCccccccCHhhhhcccccCeeeccCCccc
Confidence 67777666665 44554 34555555666655555443
No 57
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.73 E-value=4.8e-17 Score=187.54 Aligned_cols=234 Identities=15% Similarity=0.050 Sum_probs=154.1
Q ss_pred CCceeEEEeecCccccccccccccccceEEecCCCCchhhhhhhhhhhcCCccccEEEecCCCCCCCCccccCCCCccEE
Q 003890 497 PANVKWCYIMKDLIEFFSLEHSDIYLQSFLNHSSESDHLALIDCENFCEKFKHLRILNLGSAVLVQFPPGLENLFHLKYL 576 (788)
Q Consensus 497 ~~~~r~Ls~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~i~~L~~L~~L 576 (788)
+.+++.|.+.++....++. . +++|++|.+.++... .+ |. .+++|++|++++|.++.+|. .+.+|++|
T Consensus 60 ~~~L~~L~L~~N~l~~lp~-~-l~~L~~L~Ls~N~l~-~l----p~---~l~~L~~L~Ls~N~l~~l~~---~l~~L~~L 126 (622)
T 3g06_A 60 PAHITTLVIPDNNLTSLPA-L-PPELRTLEVSGNQLT-SL----PV---LPPGLLELSIFSNPLTHLPA---LPSGLCKL 126 (622)
T ss_dssp CTTCSEEEECSCCCSCCCC-C-CTTCCEEEECSCCCS-CC----CC---CCTTCCEEEECSCCCCCCCC---CCTTCCEE
T ss_pred CCCCcEEEecCCCCCCCCC-c-CCCCCEEEcCCCcCC-cC----CC---CCCCCCEEECcCCcCCCCCC---CCCCcCEE
Confidence 3466677776665543333 4 666777777666542 11 11 55667777777777766665 45667777
Q ss_pred EecCCCCcccChhhcCCCCCcEEEccCCCCcccchhhhcccccceeeccCccCCCCCcCCcCccccccccccccccccCc
Q 003890 577 KLNIPSLKCLPSLLCTLLNLQTLEMPSSYVDQSPEDIWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFISTLNPSSCTP 656 (788)
Q Consensus 577 ~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~lp~~l~~L~~L~~L~l~~~~~~~~i~~~~~~l~~L~~L~~~~~~~~~~ 656 (788)
++++|.+..+|.. +++|++|++++|.+..+|. .+++|+.|++++|.+.. +| ..+++|+.|++.++....+
T Consensus 127 ~L~~N~l~~lp~~---l~~L~~L~Ls~N~l~~l~~---~~~~L~~L~L~~N~l~~-l~---~~~~~L~~L~Ls~N~l~~l 196 (622)
T 3g06_A 127 WIFGNQLTSLPVL---PPGLQELSVSDNQLASLPA---LPSELCKLWAYNNQLTS-LP---MLPSGLQELSVSDNQLASL 196 (622)
T ss_dssp ECCSSCCSCCCCC---CTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSCC
T ss_pred ECCCCCCCcCCCC---CCCCCEEECcCCcCCCcCC---ccCCCCEEECCCCCCCC-Cc---ccCCCCcEEECCCCCCCCC
Confidence 7777777666653 3667777777776666664 24566677776665543 32 4456777777776544433
Q ss_pred cccCCCCCCCeEEEEccCCcChhcHHHhccCCCCCCEEEeecCCCCCcccccccCCCccccccc---cccccccccCccc
Q 003890 657 DILGRLPNVQTLRISGDLSCYHSGVSKSLCELHKLECLKLVNERKPSRMVLYEYQFPPTDMARI---LSQLIRQEFVESE 733 (788)
Q Consensus 657 ~~l~~L~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~l~~~~~L~~L---~~~l~~~~lp~~l 733 (788)
+. .+++|+.|++++|. ...++. .+++|+.|+|+++... . +. ..+++|+.| .|.+ ..+|.
T Consensus 197 ~~--~~~~L~~L~L~~N~---l~~l~~---~~~~L~~L~Ls~N~L~---~-lp--~~l~~L~~L~Ls~N~L--~~lp~-- 258 (622)
T 3g06_A 197 PT--LPSELYKLWAYNNR---LTSLPA---LPSGLKELIVSGNRLT---S-LP--VLPSELKELMVSGNRL--TSLPM-- 258 (622)
T ss_dssp CC--CCTTCCEEECCSSC---CSSCCC---CCTTCCEEECCSSCCS---C-CC--CCCTTCCEEECCSSCC--SCCCC--
T ss_pred CC--ccchhhEEECcCCc---ccccCC---CCCCCCEEEccCCccC---c-CC--CCCCcCcEEECCCCCC--CcCCc--
Confidence 32 34678888888876 223332 2478999999976443 2 22 446789988 6677 67885
Q ss_pred CCCCCcceEEEeccccccccccCCcccccccccCCeeEecccCc
Q 003890 734 MSLPLLQLLDLEESDEEDDERSDILEILQDINDFVHESEEAIDT 777 (788)
Q Consensus 734 ~~l~~L~~L~L~~~~l~~~~~~~~l~~l~~L~~L~~L~L~~~~~ 777 (788)
.+++|+.|+|++|.+.. .++.++++++|+.|+|++|+-
T Consensus 259 -~~~~L~~L~Ls~N~L~~-----lp~~l~~l~~L~~L~L~~N~l 296 (622)
T 3g06_A 259 -LPSGLLSLSVYRNQLTR-----LPESLIHLSSETTVNLEGNPL 296 (622)
T ss_dssp -CCTTCCEEECCSSCCCS-----CCGGGGGSCTTCEEECCSCCC
T ss_pred -ccccCcEEeCCCCCCCc-----CCHHHhhccccCEEEecCCCC
Confidence 67899999999999985 345689999999999999863
No 58
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.73 E-value=5.2e-18 Score=180.64 Aligned_cols=222 Identities=16% Similarity=0.026 Sum_probs=178.7
Q ss_pred hhhhhhhhhcCCccccEEEecCCCCCCCC-ccccCCCCccEEEecCCCCcccChhhcCCCCCcEEEccCCCCcccchhhh
Q 003890 536 ALIDCENFCEKFKHLRILNLGSAVLVQFP-PGLENLFHLKYLKLNIPSLKCLPSLLCTLLNLQTLEMPSSYVDQSPEDIW 614 (788)
Q Consensus 536 ~~~~~~~~~~~l~~L~~L~L~~~~l~~lp-~~i~~L~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~lp~~l~ 614 (788)
+...+...+..+++|+.|+|++|.++.++ ..+..+++|++|++++|.+..+++ +..+++|++|++++|.+..+|.
T Consensus 22 l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~l~~l~~--- 97 (317)
T 3o53_A 22 LKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELLV--- 97 (317)
T ss_dssp HHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSSEEEEEEE---
T ss_pred hhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCCccccccC---
Confidence 44455577888999999999999999766 679999999999999999987765 9999999999999998887764
Q ss_pred cccccceeeccCccCCCCCcCCcCccccccccccccccccCc--cccCCCCCCCeEEEEccCCcChhcHHHhc-cCCCCC
Q 003890 615 MMQKLMHLNFGSITLPAPPKNYSSSLKNLIFISTLNPSSCTP--DILGRLPNVQTLRISGDLSCYHSGVSKSL-CELHKL 691 (788)
Q Consensus 615 ~L~~L~~L~l~~~~~~~~i~~~~~~l~~L~~L~~~~~~~~~~--~~l~~L~~L~~L~l~~~~~~~~~~~~~~l-~~l~~L 691 (788)
.++|++|++++|.+....+ ..+++|++|++.++....+ ..++.+++|+.|+++++. .....+..+ ..+++|
T Consensus 98 -~~~L~~L~l~~n~l~~~~~---~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~--l~~~~~~~~~~~l~~L 171 (317)
T 3o53_A 98 -GPSIETLHAANNNISRVSC---SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNE--IDTVNFAELAASSDTL 171 (317)
T ss_dssp -CTTCCEEECCSSCCSEEEE---CCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSC--CCEEEGGGGGGGTTTC
T ss_pred -CCCcCEEECCCCccCCcCc---cccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCC--CCcccHHHHhhccCcC
Confidence 4899999999997764332 4567899999887654433 357789999999999987 333334444 468999
Q ss_pred CEEEeecCCCCCcccccccCCCccccccc---cccccccccCcccCCCCCcceEEEeccccccccccCCcccccccccCC
Q 003890 692 ECLKLVNERKPSRMVLYEYQFPPTDMARI---LSQLIRQEFVESEMSLPLLQLLDLEESDEEDDERSDILEILQDINDFV 768 (788)
Q Consensus 692 ~~L~L~~~~~~~~~~~~~~l~~~~~L~~L---~~~l~~~~lp~~l~~l~~L~~L~L~~~~l~~~~~~~~l~~l~~L~~L~ 768 (788)
+.|+|+++... .......+++|++| .|.+ ..+|..+..+++|+.|+|++|.+... .+.+..+++|+
T Consensus 172 ~~L~L~~N~l~----~~~~~~~l~~L~~L~Ls~N~l--~~l~~~~~~l~~L~~L~L~~N~l~~l-----~~~~~~l~~L~ 240 (317)
T 3o53_A 172 EHLNLQYNFIY----DVKGQVVFAKLKTLDLSSNKL--AFMGPEFQSAAGVTWISLRNNKLVLI-----EKALRFSQNLE 240 (317)
T ss_dssp CEEECTTSCCC----EEECCCCCTTCCEEECCSSCC--CEECGGGGGGTTCSEEECTTSCCCEE-----CTTCCCCTTCC
T ss_pred CEEECCCCcCc----ccccccccccCCEEECCCCcC--CcchhhhcccCcccEEECcCCcccch-----hhHhhcCCCCC
Confidence 99999976544 23444558899999 6778 77887888999999999999999853 45688999999
Q ss_pred eeEecccCch
Q 003890 769 HESEEAIDTF 778 (788)
Q Consensus 769 ~L~L~~~~~l 778 (788)
.|++++|+-.
T Consensus 241 ~L~l~~N~~~ 250 (317)
T 3o53_A 241 HFDLRGNGFH 250 (317)
T ss_dssp EEECTTCCCB
T ss_pred EEEccCCCcc
Confidence 9999998643
No 59
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.73 E-value=1.1e-18 Score=196.81 Aligned_cols=232 Identities=14% Similarity=0.070 Sum_probs=171.0
Q ss_pred ccccceEEecCCCCchhhhhhhhhhhcCCccccEEEecCCCCCCCCccccCCCCccEEEecCCCCcccChhhcCCCCCcE
Q 003890 519 DIYLQSFLNHSSESDHLALIDCENFCEKFKHLRILNLGSAVLVQFPPGLENLFHLKYLKLNIPSLKCLPSLLCTLLNLQT 598 (788)
Q Consensus 519 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~lp~~i~~L~~L~~ 598 (788)
+++|+.|.+.++... ..++..|..+++|++|+|++|.++..++ ++.+++|++|+|++|.+..+|. .++|++
T Consensus 33 ~~~L~~L~Ls~n~l~----~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~~----~~~L~~ 103 (487)
T 3oja_A 33 AWNVKELDLSGNPLS----QISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELLV----GPSIET 103 (487)
T ss_dssp GGGCCEEECCSSCCC----CCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSEEEEEEE----CTTCCE
T ss_pred CCCccEEEeeCCcCC----CCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCcCCCCCC----CCCcCE
Confidence 668888888887753 2344778888899999999998876554 8888899999999888887763 378889
Q ss_pred EEccCCCCcccchhhhcccccceeeccCccCCCCCcCCcCcccccccccccccccc--CccccC-CCCCCCeEEEEccCC
Q 003890 599 LEMPSSYVDQSPEDIWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFISTLNPSSC--TPDILG-RLPNVQTLRISGDLS 675 (788)
Q Consensus 599 L~L~~~~l~~lp~~l~~L~~L~~L~l~~~~~~~~i~~~~~~l~~L~~L~~~~~~~~--~~~~l~-~L~~L~~L~l~~~~~ 675 (788)
|++++|.+..+|. ..+++|+.|++++|.+....|..|+.+++|++|++.++... .+..+. .+++|+.|++++|.
T Consensus 104 L~L~~N~l~~~~~--~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~- 180 (487)
T 3oja_A 104 LHAANNNISRVSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF- 180 (487)
T ss_dssp EECCSSCCCCEEE--CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSC-
T ss_pred EECcCCcCCCCCc--cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCc-
Confidence 9999888887765 35688889999888776655556688888888888865432 344454 68888889888886
Q ss_pred cChhcHHHhccCCCCCCEEEeecCCCCCcccccccCCCccccccc---cccccccccCcccCCCCCcceEEEeccccccc
Q 003890 676 CYHSGVSKSLCELHKLECLKLVNERKPSRMVLYEYQFPPTDMARI---LSQLIRQEFVESEMSLPLLQLLDLEESDEEDD 752 (788)
Q Consensus 676 ~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~l~~~~~L~~L---~~~l~~~~lp~~l~~l~~L~~L~L~~~~l~~~ 752 (788)
.... ..+..+++|+.|+|+++... ..+..+..+++|+.| .|.+ ..+|.++..+++|+.|+|++|++...
T Consensus 181 --l~~~-~~~~~l~~L~~L~Ls~N~l~---~~~~~~~~l~~L~~L~Ls~N~l--~~lp~~l~~l~~L~~L~l~~N~l~c~ 252 (487)
T 3oja_A 181 --IYDV-KGQVVFAKLKTLDLSSNKLA---FMGPEFQSAAGVTWISLRNNKL--VLIEKALRFSQNLEHFDLRGNGFHCG 252 (487)
T ss_dssp --CCEE-ECCCCCTTCCEEECCSSCCC---EECGGGGGGTTCSEEECTTSCC--CEECTTCCCCTTCCEEECTTCCBCHH
T ss_pred --cccc-cccccCCCCCEEECCCCCCC---CCCHhHcCCCCccEEEecCCcC--cccchhhccCCCCCEEEcCCCCCcCc
Confidence 2222 23445788899998876555 344556777888888 6677 56888888888999999999888733
Q ss_pred cccCCcccccccccCCeeEec
Q 003890 753 ERSDILEILQDINDFVHESEE 773 (788)
Q Consensus 753 ~~~~~l~~l~~L~~L~~L~L~ 773 (788)
. ....++.+++|+.|+++
T Consensus 253 ~---~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 253 T---LRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp H---HHHHHTTCHHHHHHHHH
T ss_pred c---hHHHHHhCCCCcEEecc
Confidence 0 23446777888777775
No 60
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.73 E-value=8.1e-18 Score=182.08 Aligned_cols=250 Identities=16% Similarity=0.111 Sum_probs=191.6
Q ss_pred CCCceeEEEeecCcccccc---ccccccccceEEecCCCCchhhhhhhhhhhcCCccccEEEecCCCCCCCCcc-ccCCC
Q 003890 496 PPANVKWCYIMKDLIEFFS---LEHSDIYLQSFLNHSSESDHLALIDCENFCEKFKHLRILNLGSAVLVQFPPG-LENLF 571 (788)
Q Consensus 496 ~~~~~r~Ls~~~~~~~~~~---~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~-i~~L~ 571 (788)
.+.++++|.+.++.....+ ... +++|+.|.+.++... ...+..|.++++|++|++++|.++.+|.. ++++.
T Consensus 50 ~~~~L~~L~l~~n~i~~~~~~~~~~-l~~L~~L~L~~n~l~----~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 124 (353)
T 2z80_A 50 LTEAVKSLDLSNNRITYISNSDLQR-CVNLQALVLTSNGIN----TIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLS 124 (353)
T ss_dssp CCTTCCEEECTTSCCCEECTTTTTT-CTTCCEEECTTSCCC----EECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCT
T ss_pred ccccCcEEECCCCcCcccCHHHhcc-CCCCCEEECCCCccC----ccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCc
Confidence 3458999999988766443 455 899999999988763 23457899999999999999999988876 89999
Q ss_pred CccEEEecCCCCcccCh--hhcCCCCCcEEEccCC-CCcccc-hhhhcccccceeeccCccCCCCCcCCcCccccccccc
Q 003890 572 HLKYLKLNIPSLKCLPS--LLCTLLNLQTLEMPSS-YVDQSP-EDIWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFIS 647 (788)
Q Consensus 572 ~L~~L~L~~~~i~~lp~--~i~~L~~L~~L~L~~~-~l~~lp-~~l~~L~~L~~L~l~~~~~~~~i~~~~~~l~~L~~L~ 647 (788)
+|++|++++|.+..+|. .+.++++|++|++++| .+..++ ..+.++++|++|++++|.+....|..|+.+++|++|+
T Consensus 125 ~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 204 (353)
T 2z80_A 125 SLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLI 204 (353)
T ss_dssp TCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEE
T ss_pred cCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeec
Confidence 99999999999999987 6899999999999999 688875 4699999999999999877655555669999999999
Q ss_pred cccccccCccc--cCCCCCCCeEEEEccCCc-ChhcHHHhccCCCCCCEEEeecCCCCCcc--cccccCCCccccccc--
Q 003890 648 TLNPSSCTPDI--LGRLPNVQTLRISGDLSC-YHSGVSKSLCELHKLECLKLVNERKPSRM--VLYEYQFPPTDMARI-- 720 (788)
Q Consensus 648 ~~~~~~~~~~~--l~~L~~L~~L~l~~~~~~-~~~~~~~~l~~l~~L~~L~L~~~~~~~~~--~~~~~l~~~~~L~~L-- 720 (788)
+.++....+.. +..+++|+.|+++++.-. ..............++.++|++....... ..++.+..+++|++|
T Consensus 205 l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~L 284 (353)
T 2z80_A 205 LHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEF 284 (353)
T ss_dssp EECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEEC
T ss_pred CCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEEC
Confidence 88655433332 445889999999998711 11111122344667888998854332100 123446678899999
Q ss_pred -cccccccccCccc-CCCCCcceEEEeccccccc
Q 003890 721 -LSQLIRQEFVESE-MSLPLLQLLDLEESDEEDD 752 (788)
Q Consensus 721 -~~~l~~~~lp~~l-~~l~~L~~L~L~~~~l~~~ 752 (788)
.|.+ ..+|.++ ..+++|++|+|++|++..+
T Consensus 285 s~N~l--~~i~~~~~~~l~~L~~L~L~~N~~~~~ 316 (353)
T 2z80_A 285 SRNQL--KSVPDGIFDRLTSLQKIWLHTNPWDCS 316 (353)
T ss_dssp CSSCC--CCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred CCCCC--CccCHHHHhcCCCCCEEEeeCCCccCc
Confidence 6778 6888774 7899999999999999864
No 61
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.72 E-value=1.3e-17 Score=176.53 Aligned_cols=219 Identities=19% Similarity=0.205 Sum_probs=180.4
Q ss_pred ccccEEEecCCCCCCCCcc-ccCCCCccEEEecCCCCccc---ChhhcCCCCCcEEEccCCCCcccchhhhcccccceee
Q 003890 548 KHLRILNLGSAVLVQFPPG-LENLFHLKYLKLNIPSLKCL---PSLLCTLLNLQTLEMPSSYVDQSPEDIWMMQKLMHLN 623 (788)
Q Consensus 548 ~~L~~L~L~~~~l~~lp~~-i~~L~~L~~L~L~~~~i~~l---p~~i~~L~~L~~L~L~~~~l~~lp~~l~~L~~L~~L~ 623 (788)
++|+.|++++|.++.+|.. +.++++|++|++++|.+..+ |..+..+.+|++|++++|.+..+|..+..+++|++|+
T Consensus 28 ~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~ 107 (306)
T 2z66_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLD 107 (306)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEEEEETCTTCCEEE
T ss_pred CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccccChhhcCCCCCCCEEE
Confidence 6899999999999988876 68999999999999998865 6788889999999999999999998899999999999
Q ss_pred ccCccCCCCCc-CCcCccccccccccccccc--cCccccCCCCCCCeEEEEccCCcChh-cHHHhccCCCCCCEEEeecC
Q 003890 624 FGSITLPAPPK-NYSSSLKNLIFISTLNPSS--CTPDILGRLPNVQTLRISGDLSCYHS-GVSKSLCELHKLECLKLVNE 699 (788)
Q Consensus 624 l~~~~~~~~i~-~~~~~l~~L~~L~~~~~~~--~~~~~l~~L~~L~~L~l~~~~~~~~~-~~~~~l~~l~~L~~L~L~~~ 699 (788)
+++|.+....+ ..+..+++|++|++.++.. .....+..+++|+.|+++++. ... ..+..+..+++|+.|+|+++
T Consensus 108 l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~--l~~~~~~~~~~~l~~L~~L~Ls~n 185 (306)
T 2z66_A 108 FQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNS--FQENFLPDIFTELRNLTFLDLSQC 185 (306)
T ss_dssp CTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCE--EGGGEECSCCTTCTTCCEEECTTS
T ss_pred CCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCc--cccccchhHHhhCcCCCEEECCCC
Confidence 99886543221 3458999999999986543 344558899999999999986 333 46778899999999999976
Q ss_pred CCCCcccccccCCCccccccc---cccccccccC-cccCCCCCcceEEEeccccccccccCCcccccccc-cCCeeEecc
Q 003890 700 RKPSRMVLYEYQFPPTDMARI---LSQLIRQEFV-ESEMSLPLLQLLDLEESDEEDDERSDILEILQDIN-DFVHESEEA 774 (788)
Q Consensus 700 ~~~~~~~~~~~l~~~~~L~~L---~~~l~~~~lp-~~l~~l~~L~~L~L~~~~l~~~~~~~~l~~l~~L~-~L~~L~L~~ 774 (788)
.... .....+..+++|++| .+.+ ..+| ..+..+++|+.|+|++|.+... ....+..+| +|++|+|++
T Consensus 186 ~l~~--~~~~~~~~l~~L~~L~L~~N~l--~~~~~~~~~~l~~L~~L~L~~N~l~~~----~~~~~~~~~~~L~~L~L~~ 257 (306)
T 2z66_A 186 QLEQ--LSPTAFNSLSSLQVLNMSHNNF--FSLDTFPYKCLNSLQVLDYSLNHIMTS----KKQELQHFPSSLAFLNLTQ 257 (306)
T ss_dssp CCCE--ECTTTTTTCTTCCEEECTTSCC--SBCCSGGGTTCTTCCEEECTTSCCCBC----SSSSCCCCCTTCCEEECTT
T ss_pred CcCC--cCHHHhcCCCCCCEEECCCCcc--CccChhhccCcccCCEeECCCCCCccc----CHHHHHhhhccCCEEEccC
Confidence 5441 335677888999999 5666 4554 3678899999999999999876 566788885 999999999
Q ss_pred cC
Q 003890 775 ID 776 (788)
Q Consensus 775 ~~ 776 (788)
++
T Consensus 258 N~ 259 (306)
T 2z66_A 258 ND 259 (306)
T ss_dssp CC
T ss_pred CC
Confidence 75
No 62
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.72 E-value=7.5e-18 Score=190.13 Aligned_cols=216 Identities=16% Similarity=0.040 Sum_probs=175.9
Q ss_pred hhhcCCccccEEEecCCCCCCCC-ccccCCCCccEEEecCCCCcccChhhcCCCCCcEEEccCCCCcccchhhhcccccc
Q 003890 542 NFCEKFKHLRILNLGSAVLVQFP-PGLENLFHLKYLKLNIPSLKCLPSLLCTLLNLQTLEMPSSYVDQSPEDIWMMQKLM 620 (788)
Q Consensus 542 ~~~~~l~~L~~L~L~~~~l~~lp-~~i~~L~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~lp~~l~~L~~L~ 620 (788)
.....+++|+.|+|++|.++.+| ..|+.+++|++|+|++|.+..+++ ++.+++|++|+|++|.+..+|. .++|+
T Consensus 28 ~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~~----~~~L~ 102 (487)
T 3oja_A 28 SLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELLV----GPSIE 102 (487)
T ss_dssp TTSTTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSEEEEEEE----CTTCC
T ss_pred HhcccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCcCCCCCC----CCCcC
Confidence 44455669999999999999765 689999999999999999987765 9999999999999998888775 38999
Q ss_pred eeeccCccCCCCCcCCcCcccccccccccccccc--CccccCCCCCCCeEEEEccCCcChhcHHHhcc-CCCCCCEEEee
Q 003890 621 HLNFGSITLPAPPKNYSSSLKNLIFISTLNPSSC--TPDILGRLPNVQTLRISGDLSCYHSGVSKSLC-ELHKLECLKLV 697 (788)
Q Consensus 621 ~L~l~~~~~~~~i~~~~~~l~~L~~L~~~~~~~~--~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~l~-~l~~L~~L~L~ 697 (788)
+|++++|.+....+ ..+++|+.|++.++... .+..++.+++|+.|++++|. .....+..+. .+++|+.|+|+
T Consensus 103 ~L~L~~N~l~~~~~---~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~--l~~~~~~~l~~~l~~L~~L~Ls 177 (487)
T 3oja_A 103 TLHAANNNISRVSC---SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNE--IDTVNFAELAASSDTLEHLNLQ 177 (487)
T ss_dssp EEECCSSCCCCEEE---CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSC--CCEEEGGGGGGGTTTCCEEECT
T ss_pred EEECcCCcCCCCCc---cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCC--CCCcChHHHhhhCCcccEEecC
Confidence 99999998775432 45678999998865533 34467889999999999997 4444566665 78999999999
Q ss_pred cCCCCCcccccccCCCccccccc---cccccccccCcccCCCCCcceEEEeccccccccccCCcccccccccCCeeEecc
Q 003890 698 NERKPSRMVLYEYQFPPTDMARI---LSQLIRQEFVESEMSLPLLQLLDLEESDEEDDERSDILEILQDINDFVHESEEA 774 (788)
Q Consensus 698 ~~~~~~~~~~~~~l~~~~~L~~L---~~~l~~~~lp~~l~~l~~L~~L~L~~~~l~~~~~~~~l~~l~~L~~L~~L~L~~ 774 (788)
++... .......+++|+.| .|.+ ..+|..+..+++|+.|+|++|.+... .+.++.+++|+.|++++
T Consensus 178 ~N~l~----~~~~~~~l~~L~~L~Ls~N~l--~~~~~~~~~l~~L~~L~Ls~N~l~~l-----p~~l~~l~~L~~L~l~~ 246 (487)
T 3oja_A 178 YNFIY----DVKGQVVFAKLKTLDLSSNKL--AFMGPEFQSAAGVTWISLRNNKLVLI-----EKALRFSQNLEHFDLRG 246 (487)
T ss_dssp TSCCC----EEECCCCCTTCCEEECCSSCC--CEECGGGGGGTTCSEEECTTSCCCEE-----CTTCCCCTTCCEEECTT
T ss_pred CCccc----cccccccCCCCCEEECCCCCC--CCCCHhHcCCCCccEEEecCCcCccc-----chhhccCCCCCEEEcCC
Confidence 76654 23445568899999 6778 67877888999999999999999863 45688999999999999
Q ss_pred cCch
Q 003890 775 IDTF 778 (788)
Q Consensus 775 ~~~l 778 (788)
|+-.
T Consensus 247 N~l~ 250 (487)
T 3oja_A 247 NGFH 250 (487)
T ss_dssp CCBC
T ss_pred CCCc
Confidence 8754
No 63
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.72 E-value=2e-17 Score=175.23 Aligned_cols=190 Identities=17% Similarity=0.188 Sum_probs=106.1
Q ss_pred ccccceEEecCCCCchhhhhhhhhhhcCCccccEEEecCCCCCCCCccccCCCCccEEEecCCCCcccChhhcCCCCCcE
Q 003890 519 DIYLQSFLNHSSESDHLALIDCENFCEKFKHLRILNLGSAVLVQFPPGLENLFHLKYLKLNIPSLKCLPSLLCTLLNLQT 598 (788)
Q Consensus 519 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~lp~~i~~L~~L~~ 598 (788)
+++|+.|.+.++... .+ +.+..+++|++|++++|.+..++. +..+++|++|++++|.+..+| .+.++++|++
T Consensus 40 l~~L~~L~l~~~~i~-~l-----~~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~ 111 (308)
T 1h6u_A 40 LDGITTLSAFGTGVT-TI-----EGVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKNVS-AIAGLQSIKT 111 (308)
T ss_dssp HHTCCEEECTTSCCC-CC-----TTGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSCCG-GGTTCTTCCE
T ss_pred cCCcCEEEeeCCCcc-Cc-----hhhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcCCCch-hhcCCCCCCE
Confidence 556666666655441 11 235556666666666666665555 666666666666666666554 4566666666
Q ss_pred EEccCCCCcccchhhhcccccceeeccCccCCCCCcCCcCccccccccccccccccCccccCCCCCCCeEEEEccCCcCh
Q 003890 599 LEMPSSYVDQSPEDIWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFISTLNPSSCTPDILGRLPNVQTLRISGDLSCYH 678 (788)
Q Consensus 599 L~L~~~~l~~lp~~l~~L~~L~~L~l~~~~~~~~i~~~~~~l~~L~~L~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~ 678 (788)
|++++|.+..+|. +..+++|++|++++|.+.. +..++.+++|+.|++++|. .
T Consensus 112 L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~------------------------~~~l~~l~~L~~L~l~~n~---l 163 (308)
T 1h6u_A 112 LDLTSTQITDVTP-LAGLSNLQVLYLDLNQITN------------------------ISPLAGLTNLQYLSIGNAQ---V 163 (308)
T ss_dssp EECTTSCCCCCGG-GTTCTTCCEEECCSSCCCC------------------------CGGGGGCTTCCEEECCSSC---C
T ss_pred EECCCCCCCCchh-hcCCCCCCEEECCCCccCc------------------------CccccCCCCccEEEccCCc---C
Confidence 6666666665554 6666666666666554432 2223444445555555443 1
Q ss_pred hcHHHhccCCCCCCEEEeecCCCCCcccccccCCCccccccc---cccccccccCcccCCCCCcceEEEeccccccc
Q 003890 679 SGVSKSLCELHKLECLKLVNERKPSRMVLYEYQFPPTDMARI---LSQLIRQEFVESEMSLPLLQLLDLEESDEEDD 752 (788)
Q Consensus 679 ~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~l~~~~~L~~L---~~~l~~~~lp~~l~~l~~L~~L~L~~~~l~~~ 752 (788)
..++. +..+++|+.|+|+++... .+..+..+++|++| .|.+ ..+| .+..+++|+.|+|++|++...
T Consensus 164 ~~~~~-l~~l~~L~~L~l~~n~l~----~~~~l~~l~~L~~L~L~~N~l--~~~~-~l~~l~~L~~L~l~~N~i~~~ 232 (308)
T 1h6u_A 164 SDLTP-LANLSKLTTLKADDNKIS----DISPLASLPNLIEVHLKNNQI--SDVS-PLANTSNLFIVTLTNQTITNQ 232 (308)
T ss_dssp CCCGG-GTTCTTCCEEECCSSCCC----CCGGGGGCTTCCEEECTTSCC--CBCG-GGTTCTTCCEEEEEEEEEECC
T ss_pred CCChh-hcCCCCCCEEECCCCccC----cChhhcCCCCCCEEEccCCcc--Cccc-cccCCCCCCEEEccCCeeecC
Confidence 11111 444555555555533222 11123344445544 3444 4455 378899999999999998764
No 64
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.72 E-value=9.3e-17 Score=166.75 Aligned_cols=178 Identities=25% Similarity=0.296 Sum_probs=94.1
Q ss_pred ccccEEEecCCCCCCCCc-cccCCCCccEEEecCCCCcccChhh-cCCCCCcEEEccCCCCcccch-hhhcccccceeec
Q 003890 548 KHLRILNLGSAVLVQFPP-GLENLFHLKYLKLNIPSLKCLPSLL-CTLLNLQTLEMPSSYVDQSPE-DIWMMQKLMHLNF 624 (788)
Q Consensus 548 ~~L~~L~L~~~~l~~lp~-~i~~L~~L~~L~L~~~~i~~lp~~i-~~L~~L~~L~L~~~~l~~lp~-~l~~L~~L~~L~l 624 (788)
++|+.|++++|.++.+|. .+.++.+|++|++++|.+..+|..+ .++++|++|++++|.+..+|. .+.++++|++|++
T Consensus 37 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 116 (270)
T 2o6q_A 37 ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRL 116 (270)
T ss_dssp TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEEC
T ss_pred CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEEC
Confidence 356666666666665543 4666666666666666666665443 566666666666666666654 3456666666666
Q ss_pred cCccCCCCCcCCcCccccccccccccccccCcc--ccCCCCCCCeEEEEccCCcChhcHHHhccCCCCCCEEEeecCCCC
Q 003890 625 GSITLPAPPKNYSSSLKNLIFISTLNPSSCTPD--ILGRLPNVQTLRISGDLSCYHSGVSKSLCELHKLECLKLVNERKP 702 (788)
Q Consensus 625 ~~~~~~~~i~~~~~~l~~L~~L~~~~~~~~~~~--~l~~L~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~ 702 (788)
++|.+....+..|+.+++|++|++.++....+. .+..+++|+.|+++++. .....+..+.++++|+.|+|++
T Consensus 117 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~--l~~~~~~~~~~l~~L~~L~L~~---- 190 (270)
T 2o6q_A 117 DRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQ--LKRVPEGAFDKLTELKTLKLDN---- 190 (270)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC--CSCCCTTTTTTCTTCCEEECCS----
T ss_pred CCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCc--CcEeChhHhccCCCcCEEECCC----
Confidence 665544332233344555555544433222111 13444444444444443 1111112233344444444442
Q ss_pred CcccccccCCCccccccccccccccccCc-ccCCCCCcceEEEeccccccc
Q 003890 703 SRMVLYEYQFPPTDMARILSQLIRQEFVE-SEMSLPLLQLLDLEESDEEDD 752 (788)
Q Consensus 703 ~~~~~~~~l~~~~~L~~L~~~l~~~~lp~-~l~~l~~L~~L~L~~~~l~~~ 752 (788)
+.+ ..+|. .+..+++|+.|+|++|++..+
T Consensus 191 -------------------N~l--~~~~~~~~~~l~~L~~L~l~~N~~~c~ 220 (270)
T 2o6q_A 191 -------------------NQL--KRVPEGAFDSLEKLKMLQLQENPWDCT 220 (270)
T ss_dssp -------------------SCC--SCCCTTTTTTCTTCCEEECCSSCBCCS
T ss_pred -------------------CcC--CcCCHHHhccccCCCEEEecCCCeeCC
Confidence 333 33443 356678888888888887654
No 65
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.71 E-value=6.7e-17 Score=180.38 Aligned_cols=218 Identities=16% Similarity=0.149 Sum_probs=178.9
Q ss_pred ccccEEEecCCCCCCCC-ccccCCCCccEEEecCCCCcccC-hhhcCCCCCcEEEccCCCCcccch-hhhcccccceeec
Q 003890 548 KHLRILNLGSAVLVQFP-PGLENLFHLKYLKLNIPSLKCLP-SLLCTLLNLQTLEMPSSYVDQSPE-DIWMMQKLMHLNF 624 (788)
Q Consensus 548 ~~L~~L~L~~~~l~~lp-~~i~~L~~L~~L~L~~~~i~~lp-~~i~~L~~L~~L~L~~~~l~~lp~-~l~~L~~L~~L~l 624 (788)
++++.|+|++|.+..++ ..|.++.+|++|+|++|.+..++ ..+.++.+|++|+|++|.+..+|. .+..+++|++|++
T Consensus 64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 143 (440)
T 3zyj_A 64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWL 143 (440)
T ss_dssp TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEEC
T ss_pred CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeC
Confidence 68999999999999665 77999999999999999999885 578999999999999999999987 5899999999999
Q ss_pred cCccCCCCCcCCcCcccccccccccccc-cc--CccccCCCCCCCeEEEEccCCcChhcHHHhccCCCCCCEEEeecCCC
Q 003890 625 GSITLPAPPKNYSSSLKNLIFISTLNPS-SC--TPDILGRLPNVQTLRISGDLSCYHSGVSKSLCELHKLECLKLVNERK 701 (788)
Q Consensus 625 ~~~~~~~~i~~~~~~l~~L~~L~~~~~~-~~--~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~ 701 (788)
++|.+....+..|..+++|++|++.++. .. ....+..+++|+.|++++|. ...++ .+..+++|+.|+|+++..
T Consensus 144 ~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~---l~~~~-~~~~l~~L~~L~Ls~N~l 219 (440)
T 3zyj_A 144 RNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCN---LREIP-NLTPLIKLDELDLSGNHL 219 (440)
T ss_dssp CSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSC---CSSCC-CCTTCSSCCEEECTTSCC
T ss_pred CCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCc---Ccccc-ccCCCcccCEEECCCCcc
Confidence 9997654333456899999999998632 22 22348899999999999987 33333 578899999999997654
Q ss_pred CCcccccccCCCccccccc---cccccccccCcccCCCCCcceEEEeccccccccccCCcccccccccCCeeEecccC
Q 003890 702 PSRMVLYEYQFPPTDMARI---LSQLIRQEFVESEMSLPLLQLLDLEESDEEDDERSDILEILQDINDFVHESEEAID 776 (788)
Q Consensus 702 ~~~~~~~~~l~~~~~L~~L---~~~l~~~~lp~~l~~l~~L~~L~L~~~~l~~~~~~~~l~~l~~L~~L~~L~L~~~~ 776 (788)
.. .....+..+++|++| .+.+ ....|..+..+++|+.|+|++|++... +...+..+++|+.|+|++++
T Consensus 220 ~~--~~~~~~~~l~~L~~L~L~~n~l-~~~~~~~~~~l~~L~~L~L~~N~l~~~----~~~~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 220 SA--IRPGSFQGLMHLQKLWMIQSQI-QVIERNAFDNLQSLVEINLAHNNLTLL----PHDLFTPLHHLERIHLHHNP 290 (440)
T ss_dssp CE--ECTTTTTTCTTCCEEECTTCCC-CEECTTSSTTCTTCCEEECTTSCCCCC----CTTTTSSCTTCCEEECCSSC
T ss_pred Cc--cChhhhccCccCCEEECCCCce-eEEChhhhcCCCCCCEEECCCCCCCcc----ChhHhccccCCCEEEcCCCC
Confidence 41 346778889999999 5666 233366788999999999999999976 55568899999999999875
No 66
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.71 E-value=7.1e-17 Score=180.82 Aligned_cols=196 Identities=17% Similarity=0.116 Sum_probs=124.2
Q ss_pred ccccEEEecCCCCCCC-CccccCCCCccEEEecCCCCcccC-hhhcCCCCCcEEEccCCCCcccchh-hhcccccceeec
Q 003890 548 KHLRILNLGSAVLVQF-PPGLENLFHLKYLKLNIPSLKCLP-SLLCTLLNLQTLEMPSSYVDQSPED-IWMMQKLMHLNF 624 (788)
Q Consensus 548 ~~L~~L~L~~~~l~~l-p~~i~~L~~L~~L~L~~~~i~~lp-~~i~~L~~L~~L~L~~~~l~~lp~~-l~~L~~L~~L~l 624 (788)
++|++|+|++|.++.+ |..|.++.+|++|+|++|.+..++ ..+.++.+|++|+|++|.+..+|.. +..+++|++|++
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 154 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWL 154 (452)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEEC
T ss_pred CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEEC
Confidence 4677777777777644 456777777777777777777664 4567777777777777777776653 666777777777
Q ss_pred cCccCCCCCcCCcCccccccccccccccccCccccCCCCCCCeEEEEccCCcChhcHH-HhccCCCCCCEEEeecCCCCC
Q 003890 625 GSITLPAPPKNYSSSLKNLIFISTLNPSSCTPDILGRLPNVQTLRISGDLSCYHSGVS-KSLCELHKLECLKLVNERKPS 703 (788)
Q Consensus 625 ~~~~~~~~i~~~~~~l~~L~~L~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~-~~l~~l~~L~~L~L~~~~~~~ 703 (788)
++|.+..-.+..|..+++|+.|++. ++. ....++ ..+.++++|+.|+|+++...
T Consensus 155 ~~N~l~~~~~~~~~~l~~L~~L~l~----------------------~~~--~l~~i~~~~~~~l~~L~~L~L~~n~l~- 209 (452)
T 3zyi_A 155 RNNPIESIPSYAFNRVPSLMRLDLG----------------------ELK--KLEYISEGAFEGLFNLKYLNLGMCNIK- 209 (452)
T ss_dssp CSCCCCEECTTTTTTCTTCCEEECC----------------------CCT--TCCEECTTTTTTCTTCCEEECTTSCCS-
T ss_pred CCCCcceeCHhHHhcCCcccEEeCC----------------------CCC--CccccChhhccCCCCCCEEECCCCccc-
Confidence 7665542222223555555555544 332 111111 23444455555555533222
Q ss_pred cccccccCCCccccccc---cccccccccCcccCCCCCcceEEEeccccccccccCCcccccccccCCeeEecccC
Q 003890 704 RMVLYEYQFPPTDMARI---LSQLIRQEFVESEMSLPLLQLLDLEESDEEDDERSDILEILQDINDFVHESEEAID 776 (788)
Q Consensus 704 ~~~~~~~l~~~~~L~~L---~~~l~~~~lp~~l~~l~~L~~L~L~~~~l~~~~~~~~l~~l~~L~~L~~L~L~~~~ 776 (788)
.+..+..+++|++| .|.+ ....|.++..+++|+.|+|++|.+... ....+.++++|++|+|++|.
T Consensus 210 ---~~~~~~~l~~L~~L~Ls~N~l-~~~~~~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~N~ 277 (452)
T 3zyi_A 210 ---DMPNLTPLVGLEELEMSGNHF-PEIRPGSFHGLSSLKKLWVMNSQVSLI----ERNAFDGLASLVELNLAHNN 277 (452)
T ss_dssp ---SCCCCTTCTTCCEEECTTSCC-SEECGGGGTTCTTCCEEECTTSCCCEE----CTTTTTTCTTCCEEECCSSC
T ss_pred ---ccccccccccccEEECcCCcC-cccCcccccCccCCCEEEeCCCcCceE----CHHHhcCCCCCCEEECCCCc
Confidence 12334444555555 3444 133477889999999999999999876 56678999999999999984
No 67
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.71 E-value=9.8e-17 Score=187.62 Aligned_cols=127 Identities=18% Similarity=0.148 Sum_probs=100.2
Q ss_pred CCCceeEEEeecCcccccc---ccccccccceEEecCCCCchhhhhhhhhhhcCCccccEEEecCCCCCCCCc-cccCCC
Q 003890 496 PPANVKWCYIMKDLIEFFS---LEHSDIYLQSFLNHSSESDHLALIDCENFCEKFKHLRILNLGSAVLVQFPP-GLENLF 571 (788)
Q Consensus 496 ~~~~~r~Ls~~~~~~~~~~---~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~-~i~~L~ 571 (788)
.|.++++|.+..|.+...+ +.. +++|+.|.+.++... .+++..|.++++|++|+|++|.++.+|. .|.++.
T Consensus 50 lp~~~~~LdLs~N~i~~l~~~~f~~-l~~L~~L~Ls~N~i~----~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~ 124 (635)
T 4g8a_A 50 LPFSTKNLDLSFNPLRHLGSYSFFS-FPELQVLDLSRCEIQ----TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLS 124 (635)
T ss_dssp SCTTCCEEECTTSCCCEECTTTTTT-CTTCCEEECTTCCCC----EECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCT
T ss_pred CCcCCCEEEeeCCCCCCCCHHHHhC-CCCCCEEECCCCcCC----CcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCC
Confidence 4678899999988776544 556 889999999888752 2345788889999999999999887774 578889
Q ss_pred CccEEEecCCCCcccCh-hhcCCCCCcEEEccCCCCcc--cchhhhcccccceeeccCc
Q 003890 572 HLKYLKLNIPSLKCLPS-LLCTLLNLQTLEMPSSYVDQ--SPEDIWMMQKLMHLNFGSI 627 (788)
Q Consensus 572 ~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~l~~--lp~~l~~L~~L~~L~l~~~ 627 (788)
+|++|++++|.+..+|. .++++++|++|++++|.+.. +|..++.+++|++|++++|
T Consensus 125 ~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N 183 (635)
T 4g8a_A 125 SLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN 183 (635)
T ss_dssp TCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSS
T ss_pred CCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCc
Confidence 99999999988888865 47888889999998887654 4667788888888887643
No 68
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.70 E-value=6.3e-17 Score=168.61 Aligned_cols=197 Identities=17% Similarity=0.142 Sum_probs=127.4
Q ss_pred ccccEEEecCCCCCCCCc-cccCCCCccEEEecCCCCcccCh-hhcCCCCCcEEEccCCCCcccc-hhhhcccccceeec
Q 003890 548 KHLRILNLGSAVLVQFPP-GLENLFHLKYLKLNIPSLKCLPS-LLCTLLNLQTLEMPSSYVDQSP-EDIWMMQKLMHLNF 624 (788)
Q Consensus 548 ~~L~~L~L~~~~l~~lp~-~i~~L~~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~l~~lp-~~l~~L~~L~~L~l 624 (788)
++|++|++++|.++.++. .+.++.+|++|++++|.+..+|. .+.++++|++|++++|.+..++ ..+.++++|++|++
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 107 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence 468999999999887665 78889999999999999888765 6788999999999999888776 46888999999999
Q ss_pred cCccCCCCCcCCcCcccccccccccccccc---CccccCCCCCCCeEEEEccCCcChhcHHHhccCCCCCC----EEEee
Q 003890 625 GSITLPAPPKNYSSSLKNLIFISTLNPSSC---TPDILGRLPNVQTLRISGDLSCYHSGVSKSLCELHKLE----CLKLV 697 (788)
Q Consensus 625 ~~~~~~~~i~~~~~~l~~L~~L~~~~~~~~---~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~----~L~L~ 697 (788)
++|.+....+..++.+++|++|++.++... .+..++.+++|+.|++++|. .....+..+..+++|+ .|+++
T Consensus 108 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~--l~~~~~~~~~~l~~L~~l~l~L~ls 185 (276)
T 2z62_A 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK--IQSIYCTDLRVLHQMPLLNLSLDLS 185 (276)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSC--CCEECGGGGHHHHTCTTCCEEEECC
T ss_pred CCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCC--CCcCCHHHhhhhhhccccceeeecC
Confidence 888665433323577778888877754432 24567777777777777775 2222223333333333 66666
Q ss_pred cCCCCCcccccccCCCccccccc---cccccccccCcc-cCCCCCcceEEEecccccc
Q 003890 698 NERKPSRMVLYEYQFPPTDMARI---LSQLIRQEFVES-EMSLPLLQLLDLEESDEED 751 (788)
Q Consensus 698 ~~~~~~~~~~~~~l~~~~~L~~L---~~~l~~~~lp~~-l~~l~~L~~L~L~~~~l~~ 751 (788)
++... ..........+|++| .+.+ ..+|.. +..+++|+.|+|++|++..
T Consensus 186 ~n~l~---~~~~~~~~~~~L~~L~L~~n~l--~~~~~~~~~~l~~L~~L~l~~N~~~c 238 (276)
T 2z62_A 186 LNPMN---FIQPGAFKEIRLKELALDTNQL--KSVPDGIFDRLTSLQKIWLHTNPWDC 238 (276)
T ss_dssp SSCCC---EECTTSSCSCCEEEEECCSSCC--SCCCTTTTTTCCSCCEEECCSSCBCC
T ss_pred CCccc---ccCccccCCCcccEEECCCCce--eecCHhHhcccccccEEEccCCcccc
Confidence 54332 122222222345555 3444 333332 3445555555555555543
No 69
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.69 E-value=8.3e-18 Score=184.38 Aligned_cols=252 Identities=13% Similarity=0.085 Sum_probs=176.8
Q ss_pred ccccceEEecCCCCchhhhhhhhhhhcCCccccEEEecCCCCC----CCCccc-------cCCCCccEEEecCCCCcc--
Q 003890 519 DIYLQSFLNHSSESDHLALIDCENFCEKFKHLRILNLGSAVLV----QFPPGL-------ENLFHLKYLKLNIPSLKC-- 585 (788)
Q Consensus 519 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~----~lp~~i-------~~L~~L~~L~L~~~~i~~-- 585 (788)
+++|+.|.+.++.........+...|..+++|++|+|++|.+. .+|..+ ..+++|++|+|++|.+..
T Consensus 31 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~ 110 (386)
T 2ca6_A 31 DDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTA 110 (386)
T ss_dssp CSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTT
T ss_pred CCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHH
Confidence 7889999999887654434344566888999999999998655 344444 688999999999999876
Q ss_pred ---cChhhcCCCCCcEEEccCCCCcc-----cchhhhcc---------cccceeeccCccCC-CCCc---CCcCcccccc
Q 003890 586 ---LPSLLCTLLNLQTLEMPSSYVDQ-----SPEDIWMM---------QKLMHLNFGSITLP-APPK---NYSSSLKNLI 644 (788)
Q Consensus 586 ---lp~~i~~L~~L~~L~L~~~~l~~-----lp~~l~~L---------~~L~~L~l~~~~~~-~~i~---~~~~~l~~L~ 644 (788)
+|..+.++++|++|+|++|.+.. ++..+..+ ++|++|++++|.+. .+++ ..+..+++|+
T Consensus 111 ~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~ 190 (386)
T 2ca6_A 111 QEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLH 190 (386)
T ss_dssp HHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCC
T ss_pred HHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcC
Confidence 78888999999999999997753 33344555 89999999988776 3333 2335778888
Q ss_pred cccccccccc------Ccc-ccCCCCCCCeEEEEccCCcCh----hcHHHhccCCCCCCEEEeecCCCCCcc--cccccC
Q 003890 645 FISTLNPSSC------TPD-ILGRLPNVQTLRISGDLSCYH----SGVSKSLCELHKLECLKLVNERKPSRM--VLYEYQ 711 (788)
Q Consensus 645 ~L~~~~~~~~------~~~-~l~~L~~L~~L~l~~~~~~~~----~~~~~~l~~l~~L~~L~L~~~~~~~~~--~~~~~l 711 (788)
+|++.++... ..+ .+..+++|+.|++++|. .. ..++..+..+++|+.|+|+++...... .....+
T Consensus 191 ~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~--l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l 268 (386)
T 2ca6_A 191 TVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNT--FTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAF 268 (386)
T ss_dssp EEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSC--CHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHH
T ss_pred EEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCC--CCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHH
Confidence 8888865443 233 67888999999999987 32 567778888999999999976543110 012333
Q ss_pred --CCccccccc---ccccccc----ccCccc-CCCCCcceEEEeccccccccccCC--ccc-ccccccCCeeEecccCc
Q 003890 712 --FPPTDMARI---LSQLIRQ----EFVESE-MSLPLLQLLDLEESDEEDDERSDI--LEI-LQDINDFVHESEEAIDT 777 (788)
Q Consensus 712 --~~~~~L~~L---~~~l~~~----~lp~~l-~~l~~L~~L~L~~~~l~~~~~~~~--l~~-l~~L~~L~~L~L~~~~~ 777 (788)
..+++|++| .|.+ +. .+|.++ .++++|++|+|++|++... . ... ...+|.++.+.+...+.
T Consensus 269 ~~~~~~~L~~L~L~~n~i-~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~----~~~~~~l~~~l~~~~~~~l~~~d~ 342 (386)
T 2ca6_A 269 SKLENIGLQTLRLQYNEI-ELDAVRTLKTVIDEKMPDLLFLELNGNRFSEE----DDVVDEIREVFSTRGRGELDELDD 342 (386)
T ss_dssp HTCSSCCCCEEECCSSCC-BHHHHHHHHHHHHHHCTTCCEEECTTSBSCTT----SHHHHHHHHHHHHHTCCEECCCCS
T ss_pred hhccCCCeEEEECcCCcC-CHHHHHHHHHHHHhcCCCceEEEccCCcCCcc----hhHHHHHHHHhhhcCcchhhhccc
Confidence 236777777 5555 12 266666 4578888888888888764 3 122 23466777666665543
No 70
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.67 E-value=4.2e-16 Score=165.06 Aligned_cols=187 Identities=16% Similarity=0.160 Sum_probs=153.1
Q ss_pred CCceeEEEeecCcccccc-ccccccccceEEecCCCCchhhhhhhhhhhcCCccccEEEecCCCCCCCCccccCCCCccE
Q 003890 497 PANVKWCYIMKDLIEFFS-LEHSDIYLQSFLNHSSESDHLALIDCENFCEKFKHLRILNLGSAVLVQFPPGLENLFHLKY 575 (788)
Q Consensus 497 ~~~~r~Ls~~~~~~~~~~-~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~i~~L~~L~~ 575 (788)
..++++|.+.++.....+ ... +++|+.|.+.++... .+ +. +..+++|++|++++|.++.+| .+..+.+|++
T Consensus 40 l~~L~~L~l~~~~i~~l~~~~~-l~~L~~L~L~~n~i~-~~----~~-~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~ 111 (308)
T 1h6u_A 40 LDGITTLSAFGTGVTTIEGVQY-LNNLIGLELKDNQIT-DL----AP-LKNLTKITELELSGNPLKNVS-AIAGLQSIKT 111 (308)
T ss_dssp HHTCCEEECTTSCCCCCTTGGG-CTTCCEEECCSSCCC-CC----GG-GTTCCSCCEEECCSCCCSCCG-GGTTCTTCCE
T ss_pred cCCcCEEEeeCCCccCchhhhc-cCCCCEEEccCCcCC-CC----hh-HccCCCCCEEEccCCcCCCch-hhcCCCCCCE
Confidence 346889999877665444 555 899999999998763 12 23 899999999999999999876 6999999999
Q ss_pred EEecCCCCcccChhhcCCCCCcEEEccCCCCcccchhhhcccccceeeccCccCCCCCcCCcCccccccccccccccccC
Q 003890 576 LKLNIPSLKCLPSLLCTLLNLQTLEMPSSYVDQSPEDIWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFISTLNPSSCT 655 (788)
Q Consensus 576 L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~lp~~l~~L~~L~~L~l~~~~~~~~i~~~~~~l~~L~~L~~~~~~~~~ 655 (788)
|++++|.+..+|. +..+++|++|++++|.+..+|. +..+++|++|++++|.+.. ++. ++.+++|+.|++.++....
T Consensus 112 L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~ 187 (308)
T 1h6u_A 112 LDLTSTQITDVTP-LAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNAQVSD-LTP-LANLSKLTTLKADDNKISD 187 (308)
T ss_dssp EECTTSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCC
T ss_pred EECCCCCCCCchh-hcCCCCCCEEECCCCccCcCcc-ccCCCCccEEEccCCcCCC-Chh-hcCCCCCCEEECCCCccCc
Confidence 9999999999875 9999999999999999999887 9999999999999997764 323 5888888988888766666
Q ss_pred ccccCCCCCCCeEEEEccCCcChhcHHHhccCCCCCCEEEeecC
Q 003890 656 PDILGRLPNVQTLRISGDLSCYHSGVSKSLCELHKLECLKLVNE 699 (788)
Q Consensus 656 ~~~l~~L~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~L~~~ 699 (788)
+..+..+++|+.|++++|. ....+ .+..+++|+.|+|+++
T Consensus 188 ~~~l~~l~~L~~L~L~~N~---l~~~~-~l~~l~~L~~L~l~~N 227 (308)
T 1h6u_A 188 ISPLASLPNLIEVHLKNNQ---ISDVS-PLANTSNLFIVTLTNQ 227 (308)
T ss_dssp CGGGGGCTTCCEEECTTSC---CCBCG-GGTTCTTCCEEEEEEE
T ss_pred ChhhcCCCCCCEEEccCCc---cCccc-cccCCCCCCEEEccCC
Confidence 6668888899999998886 22333 3788888999999864
No 71
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.67 E-value=5e-16 Score=161.38 Aligned_cols=202 Identities=19% Similarity=0.205 Sum_probs=151.5
Q ss_pred ccccceEEecCCCCchhhhhhhhhhhcCCccccEEEecCCCCCCCCccccCCCCccEEEecCCCCcccChh-hcCCCCCc
Q 003890 519 DIYLQSFLNHSSESDHLALIDCENFCEKFKHLRILNLGSAVLVQFPPGLENLFHLKYLKLNIPSLKCLPSL-LCTLLNLQ 597 (788)
Q Consensus 519 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~lp~~-i~~L~~L~ 597 (788)
+++|+.|.+.++... .+ ..+..+++|++|++++|.+..++ .++.+++|++|++++|.+..+|.. ++++++|+
T Consensus 40 l~~L~~L~l~~~~i~-~~-----~~l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 112 (272)
T 3rfs_A 40 LNSIDQIIANNSDIK-SV-----QGIQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLK 112 (272)
T ss_dssp HTTCCEEECTTSCCC-CC-----TTGGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred ccceeeeeeCCCCcc-cc-----cccccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCCccCccChhHhcCCcCCC
Confidence 778888888887652 11 45778889999999999888764 788889999999999988887654 68889999
Q ss_pred EEEccCCCCcccchh-hhcccccceeeccCccCCCCCcCCcCccccccccccccccccCcc--ccCCCCCCCeEEEEccC
Q 003890 598 TLEMPSSYVDQSPED-IWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFISTLNPSSCTPD--ILGRLPNVQTLRISGDL 674 (788)
Q Consensus 598 ~L~L~~~~l~~lp~~-l~~L~~L~~L~l~~~~~~~~i~~~~~~l~~L~~L~~~~~~~~~~~--~l~~L~~L~~L~l~~~~ 674 (788)
+|++++|.+..+|.. +.++++|++|++++|.+....+..|+.+++|++|++.++....+. .++.+++|+.|++++|.
T Consensus 113 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~ 192 (272)
T 3rfs_A 113 ELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQ 192 (272)
T ss_dssp EEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCc
Confidence 999999988888764 788999999999888766444445688888888888865443333 37888999999999887
Q ss_pred CcChhcHHHhccCCCCCCEEEeecCCCCCcccccccCCCccccccc---cccccccccCcccCCCCCc
Q 003890 675 SCYHSGVSKSLCELHKLECLKLVNERKPSRMVLYEYQFPPTDMARI---LSQLIRQEFVESEMSLPLL 739 (788)
Q Consensus 675 ~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~l~~~~~L~~L---~~~l~~~~lp~~l~~l~~L 739 (788)
.....+..+..+++|+.|+|+++... +.+++|+.| .+.+ ...+|.+++.++..
T Consensus 193 --l~~~~~~~~~~l~~L~~L~l~~N~~~---------~~~~~l~~l~~~~n~~-~g~ip~~~~~~~~~ 248 (272)
T 3rfs_A 193 --LKSVPDGVFDRLTSLQYIWLHDNPWD---------CTCPGIRYLSEWINKH-SGVVRNSAGSVAPD 248 (272)
T ss_dssp --CSCCCTTTTTTCTTCCEEECCSSCBC---------CCTTTTHHHHHHHHHT-GGGBBCTTSCBCGG
T ss_pred --CCccCHHHHhCCcCCCEEEccCCCcc---------ccCcHHHHHHHHHHhC-CCcccCcccccCCC
Confidence 34444456788899999999865332 336677777 4555 34678787776543
No 72
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.66 E-value=6.2e-16 Score=162.14 Aligned_cols=175 Identities=21% Similarity=0.121 Sum_probs=91.1
Q ss_pred ccccEEEecCCCCCCC-CccccCCCCccEEEecCCCCcccChhhcCCCCCcEEEccCCCCcccchhhhcccccceeeccC
Q 003890 548 KHLRILNLGSAVLVQF-PPGLENLFHLKYLKLNIPSLKCLPSLLCTLLNLQTLEMPSSYVDQSPEDIWMMQKLMHLNFGS 626 (788)
Q Consensus 548 ~~L~~L~L~~~~l~~l-p~~i~~L~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~lp~~l~~L~~L~~L~l~~ 626 (788)
++|+.|+|++|.++.+ |..+..+.+|++|++++|.+..+|.. +.+++|++|++++|.+..+|..+..+++|++|++++
T Consensus 31 ~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~ 109 (290)
T 1p9a_G 31 KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSF 109 (290)
T ss_dssp TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTCCEEECCSSCCSSCCCCTTTCTTCCEEECCS
T ss_pred CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC-CCCCcCCEEECCCCcCCcCchhhccCCCCCEEECCC
Confidence 3556666666665533 34455566666666666666555433 555666666666665555655555566666666655
Q ss_pred ccCCCCCcCCcCccccccccccccccccCccccCCCCCCCeEEEEccCCcChhcHHHhccCCCCCCEEEeecCCCCCccc
Q 003890 627 ITLPAPPKNYSSSLKNLIFISTLNPSSCTPDILGRLPNVQTLRISGDLSCYHSGVSKSLCELHKLECLKLVNERKPSRMV 706 (788)
Q Consensus 627 ~~~~~~i~~~~~~l~~L~~L~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~ 706 (788)
|.+....+..|+.+++|++|++ +++. .....+..+..+++|+.|+|+++.... .
T Consensus 110 N~l~~l~~~~~~~l~~L~~L~L----------------------~~N~--l~~~~~~~~~~l~~L~~L~L~~N~l~~--l 163 (290)
T 1p9a_G 110 NRLTSLPLGALRGLGELQELYL----------------------KGNE--LKTLPPGLLTPTPKLEKLSLANNNLTE--L 163 (290)
T ss_dssp SCCCCCCSSTTTTCTTCCEEEC----------------------TTSC--CCCCCTTTTTTCTTCCEEECTTSCCSC--C
T ss_pred CcCcccCHHHHcCCCCCCEEEC----------------------CCCC--CCccChhhcccccCCCEEECCCCcCCc--c
Confidence 5444322233344455555544 4443 111112233444445555554332220 1
Q ss_pred ccccCCCccccccc---cccccccccCcccCCCCCcceEEEecccccc
Q 003890 707 LYEYQFPPTDMARI---LSQLIRQEFVESEMSLPLLQLLDLEESDEED 751 (788)
Q Consensus 707 ~~~~l~~~~~L~~L---~~~l~~~~lp~~l~~l~~L~~L~L~~~~l~~ 751 (788)
....+..+++|+.| .|.+ ..+|.++..+++|+.|+|++|++..
T Consensus 164 ~~~~~~~l~~L~~L~L~~N~l--~~ip~~~~~~~~L~~l~L~~Np~~C 209 (290)
T 1p9a_G 164 PAGLLNGLENLDTLLLQENSL--YTIPKGFFGSHLLPFAFLHGNPWLC 209 (290)
T ss_dssp CTTTTTTCTTCCEEECCSSCC--CCCCTTTTTTCCCSEEECCSCCBCC
T ss_pred CHHHhcCcCCCCEEECCCCcC--CccChhhcccccCCeEEeCCCCccC
Confidence 11223334444444 4445 5667677777778888888777654
No 73
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.66 E-value=3.6e-16 Score=162.82 Aligned_cols=212 Identities=16% Similarity=0.188 Sum_probs=148.1
Q ss_pred EEEecCCCCCCCCccccCCCCccEEEecCCCCcccCh-hhcCCCCCcEEEccCCCCcccch-hhhcccccceeeccCccC
Q 003890 552 ILNLGSAVLVQFPPGLENLFHLKYLKLNIPSLKCLPS-LLCTLLNLQTLEMPSSYVDQSPE-DIWMMQKLMHLNFGSITL 629 (788)
Q Consensus 552 ~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~l~~lp~-~l~~L~~L~~L~l~~~~~ 629 (788)
..+..+..+..+|..+. .+|++|++++|.+..+|. .+.++++|++|++++|.+..++. .+.++++|++|++++|.+
T Consensus 11 ~~~c~~~~l~~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 88 (276)
T 2z62_A 11 TYQCMELNFYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 88 (276)
T ss_dssp EEECTTSCCSSCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred eEEecCCCccccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCcc
Confidence 45556666777777664 478888888888887765 67888888888888888877765 578888888888888866
Q ss_pred CCCCcCCcCccccccccccccccccCcc--ccCCCCCCCeEEEEccCCcChh-cHHHhccCCCCCCEEEeecCCCCCccc
Q 003890 630 PAPPKNYSSSLKNLIFISTLNPSSCTPD--ILGRLPNVQTLRISGDLSCYHS-GVSKSLCELHKLECLKLVNERKPSRMV 706 (788)
Q Consensus 630 ~~~i~~~~~~l~~L~~L~~~~~~~~~~~--~l~~L~~L~~L~l~~~~~~~~~-~~~~~l~~l~~L~~L~L~~~~~~~~~~ 706 (788)
....+..|+++++|++|++.++....+. .++.+++|+.|+++++. ... .++..+.++++|+.|+|+++.... .
T Consensus 89 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~--l~~~~l~~~~~~l~~L~~L~Ls~N~l~~--~ 164 (276)
T 2z62_A 89 QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNL--IQSFKLPEYFSNLTNLEHLDLSSNKIQS--I 164 (276)
T ss_dssp CEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSC--CCCCCCCGGGGGCTTCCEEECCSSCCCE--E
T ss_pred CccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCc--cceecCchhhccCCCCCEEECCCCCCCc--C
Confidence 5433445588888888888765433332 47788888888888876 222 246677888888888888654431 2
Q ss_pred ccccCCCccccc----cc---cccccccccCcccCCCCCcceEEEeccccccccccCCcccccccccCCeeEeccc
Q 003890 707 LYEYQFPPTDMA----RI---LSQLIRQEFVESEMSLPLLQLLDLEESDEEDDERSDILEILQDINDFVHESEEAI 775 (788)
Q Consensus 707 ~~~~l~~~~~L~----~L---~~~l~~~~lp~~l~~l~~L~~L~L~~~~l~~~~~~~~l~~l~~L~~L~~L~L~~~ 775 (788)
....+..+++|+ +| .+.+ ..+|.......+|+.|+|++|.+... +...++++++|++|+|+++
T Consensus 165 ~~~~~~~l~~L~~l~l~L~ls~n~l--~~~~~~~~~~~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~l~~N 234 (276)
T 2z62_A 165 YCTDLRVLHQMPLLNLSLDLSLNPM--NFIQPGAFKEIRLKELALDTNQLKSV----PDGIFDRLTSLQKIWLHTN 234 (276)
T ss_dssp CGGGGHHHHTCTTCCEEEECCSSCC--CEECTTSSCSCCEEEEECCSSCCSCC----CTTTTTTCCSCCEEECCSS
T ss_pred CHHHhhhhhhccccceeeecCCCcc--cccCccccCCCcccEEECCCCceeec----CHhHhcccccccEEEccCC
Confidence 233444555555 44 5566 55555555556888888888888764 3344678888888888854
No 74
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.65 E-value=2.1e-15 Score=168.44 Aligned_cols=244 Identities=16% Similarity=0.126 Sum_probs=116.5
Q ss_pred CCceeEEEeecCccccccccccccccceEEecCCCCchhhhhhhhhhhcCC-ccccEEEecCCCCCCCCccccCCCCccE
Q 003890 497 PANVKWCYIMKDLIEFFSLEHSDIYLQSFLNHSSESDHLALIDCENFCEKF-KHLRILNLGSAVLVQFPPGLENLFHLKY 575 (788)
Q Consensus 497 ~~~~r~Ls~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l-~~L~~L~L~~~~l~~lp~~i~~L~~L~~ 575 (788)
+.+++.|.+..+.....+ .. +++|+.|.+.++... .+..+ ++|++|++++|.++.+| .++++.+|++
T Consensus 90 ~~~L~~L~l~~n~l~~lp-~~-~~~L~~L~l~~n~l~---------~l~~~~~~L~~L~L~~n~l~~lp-~~~~l~~L~~ 157 (454)
T 1jl5_A 90 PPHLESLVASCNSLTELP-EL-PQSLKSLLVDNNNLK---------ALSDLPPLLEYLGVSNNQLEKLP-ELQNSSFLKI 157 (454)
T ss_dssp CTTCSEEECCSSCCSSCC-CC-CTTCCEEECCSSCCS---------CCCSCCTTCCEEECCSSCCSSCC-CCTTCTTCCE
T ss_pred cCCCCEEEccCCcCCccc-cc-cCCCcEEECCCCccC---------cccCCCCCCCEEECcCCCCCCCc-ccCCCCCCCE
Confidence 345666666655443322 12 455666666555431 11111 45556666666555555 3555556666
Q ss_pred EEecCCCCcccChhhcCCCCCcEEEccCCCCcccchhhhcccccceeeccCccCCCCCcCCcCccccccccccccccccC
Q 003890 576 LKLNIPSLKCLPSLLCTLLNLQTLEMPSSYVDQSPEDIWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFISTLNPSSCT 655 (788)
Q Consensus 576 L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~lp~~l~~L~~L~~L~l~~~~~~~~i~~~~~~l~~L~~L~~~~~~~~~ 655 (788)
|++++|.+..+|..+ .+|++|++++|.+..+| .++++++|++|++++|.+.. +|. ..++|++|++.++....
T Consensus 158 L~l~~N~l~~lp~~~---~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~~N~l~~-l~~---~~~~L~~L~l~~n~l~~ 229 (454)
T 1jl5_A 158 IDVDNNSLKKLPDLP---PSLEFIAAGNNQLEELP-ELQNLPFLTAIYADNNSLKK-LPD---LPLSLESIVAGNNILEE 229 (454)
T ss_dssp EECCSSCCSCCCCCC---TTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSS-CCC---CCTTCCEEECCSSCCSS
T ss_pred EECCCCcCcccCCCc---ccccEEECcCCcCCcCc-cccCCCCCCEEECCCCcCCc-CCC---CcCcccEEECcCCcCCc
Confidence 666655555555332 35555555555555555 25555555555555554332 211 11244444444333223
Q ss_pred ccccCCCCCCCeEEEEccCCc-----------------ChhcHHHhccCCCCCCEEEeecCCCCC--cc-----------
Q 003890 656 PDILGRLPNVQTLRISGDLSC-----------------YHSGVSKSLCELHKLECLKLVNERKPS--RM----------- 705 (788)
Q Consensus 656 ~~~l~~L~~L~~L~l~~~~~~-----------------~~~~~~~~l~~l~~L~~L~L~~~~~~~--~~----------- 705 (788)
++.++.+++|+.|+++++.-. ....++.. .++|+.|+++++.... ..
T Consensus 230 lp~~~~l~~L~~L~l~~N~l~~l~~~~~~L~~L~l~~N~l~~l~~~---~~~L~~L~ls~N~l~~l~~~~~~L~~L~l~~ 306 (454)
T 1jl5_A 230 LPELQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPEL---PQSLTFLDVSENIFSGLSELPPNLYYLNASS 306 (454)
T ss_dssp CCCCTTCTTCCEEECCSSCCSSCCSCCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSEESCCCTTCCEEECCS
T ss_pred ccccCCCCCCCEEECCCCcCCcccccccccCEEECCCCcccccCcc---cCcCCEEECcCCccCcccCcCCcCCEEECcC
Confidence 333444444444444444300 01111111 2455556655432210 00
Q ss_pred cccccCCCc-cccccc---cccccccccCcccCCCCCcceEEEeccccccccccCCcccccccccCCeeEecccC
Q 003890 706 VLYEYQFPP-TDMARI---LSQLIRQEFVESEMSLPLLQLLDLEESDEEDDERSDILEILQDINDFVHESEEAID 776 (788)
Q Consensus 706 ~~~~~l~~~-~~L~~L---~~~l~~~~lp~~l~~l~~L~~L~L~~~~l~~~~~~~~l~~l~~L~~L~~L~L~~~~ 776 (788)
..+..+... ++|++| .+.+ ..+|.+ +++|++|++++|.+.. +|. .+++|++|++++|.
T Consensus 307 N~l~~i~~~~~~L~~L~Ls~N~l--~~lp~~---~~~L~~L~L~~N~l~~------lp~--~l~~L~~L~L~~N~ 368 (454)
T 1jl5_A 307 NEIRSLCDLPPSLEELNVSNNKL--IELPAL---PPRLERLIASFNHLAE------VPE--LPQNLKQLHVEYNP 368 (454)
T ss_dssp SCCSEECCCCTTCCEEECCSSCC--SCCCCC---CTTCCEEECCSSCCSC------CCC--CCTTCCEEECCSSC
T ss_pred CcCCcccCCcCcCCEEECCCCcc--cccccc---CCcCCEEECCCCcccc------ccc--hhhhccEEECCCCC
Confidence 000011111 355555 4444 345532 4677788888887763 333 46788888888775
No 75
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.65 E-value=1.8e-15 Score=157.00 Aligned_cols=173 Identities=21% Similarity=0.252 Sum_probs=86.2
Q ss_pred cccceEEecCCCCchhhhhhhhhhhcCCccccEEEecCCCCCCCCcc-ccCCCCccEEEecCCCCcccChh-hcCCCCCc
Q 003890 520 IYLQSFLNHSSESDHLALIDCENFCEKFKHLRILNLGSAVLVQFPPG-LENLFHLKYLKLNIPSLKCLPSL-LCTLLNLQ 597 (788)
Q Consensus 520 ~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~-i~~L~~L~~L~L~~~~i~~lp~~-i~~L~~L~ 597 (788)
++++.|.+.++... .+++..|..+++|++|++++|.++.+|.. +.++++|++|++++|.+..+|.. +.++.+|+
T Consensus 37 ~~l~~L~l~~n~l~----~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 112 (270)
T 2o6q_A 37 ADTKKLDLQSNKLS----SLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLA 112 (270)
T ss_dssp TTCSEEECCSSCCS----CCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCC
T ss_pred CCCCEEECcCCCCC----eeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCC
Confidence 44555555555431 12224455555566666655555555443 34555556666655555555432 35555556
Q ss_pred EEEccCCCCcccch-hhhcccccceeeccCccCCCCCcCCcCccccccccccccccccCc--cccCCCCCCCeEEEEccC
Q 003890 598 TLEMPSSYVDQSPE-DIWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFISTLNPSSCTP--DILGRLPNVQTLRISGDL 674 (788)
Q Consensus 598 ~L~L~~~~l~~lp~-~l~~L~~L~~L~l~~~~~~~~i~~~~~~l~~L~~L~~~~~~~~~~--~~l~~L~~L~~L~l~~~~ 674 (788)
+|++++|.+..+|. .+..+++|++|++++|.+....+..|+.+++|+.|++.++....+ ..+..+++|+.|+++++.
T Consensus 113 ~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~ 192 (270)
T 2o6q_A 113 ELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQ 192 (270)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCc
Confidence 66665555555543 345555566665555544322222245555555555554332222 124555555555555554
Q ss_pred CcChhcHHHhccCCCCCCEEEeec
Q 003890 675 SCYHSGVSKSLCELHKLECLKLVN 698 (788)
Q Consensus 675 ~~~~~~~~~~l~~l~~L~~L~L~~ 698 (788)
.....+..+..+++|+.|+|++
T Consensus 193 --l~~~~~~~~~~l~~L~~L~l~~ 214 (270)
T 2o6q_A 193 --LKRVPEGAFDSLEKLKMLQLQE 214 (270)
T ss_dssp --CSCCCTTTTTTCTTCCEEECCS
T ss_pred --CCcCCHHHhccccCCCEEEecC
Confidence 2222222344555555555554
No 76
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.65 E-value=7e-16 Score=177.84 Aligned_cols=218 Identities=16% Similarity=0.094 Sum_probs=172.7
Q ss_pred CCCceeEEEeecCccccccccccccccceEEecCCCCchhhhhhhhhhhcCCccccEEEecCCCCCCCCccccCCCCccE
Q 003890 496 PPANVKWCYIMKDLIEFFSLEHSDIYLQSFLNHSSESDHLALIDCENFCEKFKHLRILNLGSAVLVQFPPGLENLFHLKY 575 (788)
Q Consensus 496 ~~~~~r~Ls~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~i~~L~~L~~ 575 (788)
...+++.|.+.+|....++. . +++|+.|.+.++... .+ |. .+++|+.|++++|.++.+|.. +++|++
T Consensus 79 ~l~~L~~L~Ls~N~l~~lp~-~-l~~L~~L~Ls~N~l~-~l----~~---~l~~L~~L~L~~N~l~~lp~~---l~~L~~ 145 (622)
T 3g06_A 79 LPPELRTLEVSGNQLTSLPV-L-PPGLLELSIFSNPLT-HL----PA---LPSGLCKLWIFGNQLTSLPVL---PPGLQE 145 (622)
T ss_dssp CCTTCCEEEECSCCCSCCCC-C-CTTCCEEEECSCCCC-CC----CC---CCTTCCEEECCSSCCSCCCCC---CTTCCE
T ss_pred cCCCCCEEEcCCCcCCcCCC-C-CCCCCEEECcCCcCC-CC----CC---CCCCcCEEECCCCCCCcCCCC---CCCCCE
Confidence 45689999999887665444 6 899999999998762 11 12 678999999999999999875 489999
Q ss_pred EEecCCCCcccChhhcCCCCCcEEEccCCCCcccchhhhcccccceeeccCccCCCCCcCCcCccccccccccccccccC
Q 003890 576 LKLNIPSLKCLPSLLCTLLNLQTLEMPSSYVDQSPEDIWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFISTLNPSSCT 655 (788)
Q Consensus 576 L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~lp~~l~~L~~L~~L~l~~~~~~~~i~~~~~~l~~L~~L~~~~~~~~~ 655 (788)
|++++|.+..+|. .+.+|+.|++++|.+..+| ..+++|+.|++++|.+.. +| ..+++|+.|++.++....
T Consensus 146 L~Ls~N~l~~l~~---~~~~L~~L~L~~N~l~~l~---~~~~~L~~L~Ls~N~l~~-l~---~~~~~L~~L~L~~N~l~~ 215 (622)
T 3g06_A 146 LSVSDNQLASLPA---LPSELCKLWAYNNQLTSLP---MLPSGLQELSVSDNQLAS-LP---TLPSELYKLWAYNNRLTS 215 (622)
T ss_dssp EECCSSCCSCCCC---CCTTCCEEECCSSCCSCCC---CCCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSS
T ss_pred EECcCCcCCCcCC---ccCCCCEEECCCCCCCCCc---ccCCCCcEEECCCCCCCC-CC---CccchhhEEECcCCcccc
Confidence 9999999999885 3568999999999999999 467899999999998764 43 345788888888765544
Q ss_pred ccccCCCCCCCeEEEEccCCcChhcHHHhccCCCCCCEEEeecCCCCCcccccccCCCccccccc---cccccccccCcc
Q 003890 656 PDILGRLPNVQTLRISGDLSCYHSGVSKSLCELHKLECLKLVNERKPSRMVLYEYQFPPTDMARI---LSQLIRQEFVES 732 (788)
Q Consensus 656 ~~~l~~L~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~l~~~~~L~~L---~~~l~~~~lp~~ 732 (788)
++. .+++|+.|++++|. ...++ ..+++|+.|+|+++... ..+. .+++|+.| .|.+ ..+|.+
T Consensus 216 l~~--~~~~L~~L~Ls~N~---L~~lp---~~l~~L~~L~Ls~N~L~---~lp~---~~~~L~~L~Ls~N~L--~~lp~~ 279 (622)
T 3g06_A 216 LPA--LPSGLKELIVSGNR---LTSLP---VLPSELKELMVSGNRLT---SLPM---LPSGLLSLSVYRNQL--TRLPES 279 (622)
T ss_dssp CCC--CCTTCCEEECCSSC---CSCCC---CCCTTCCEEECCSSCCS---CCCC---CCTTCCEEECCSSCC--CSCCGG
T ss_pred cCC--CCCCCCEEEccCCc---cCcCC---CCCCcCcEEECCCCCCC---cCCc---ccccCcEEeCCCCCC--CcCCHH
Confidence 443 35889999999986 33344 45689999999976543 2222 56789999 7778 689999
Q ss_pred cCCCCCcceEEEeccccccc
Q 003890 733 EMSLPLLQLLDLEESDEEDD 752 (788)
Q Consensus 733 l~~l~~L~~L~L~~~~l~~~ 752 (788)
+..+++|+.|+|++|++.+.
T Consensus 280 l~~l~~L~~L~L~~N~l~~~ 299 (622)
T 3g06_A 280 LIHLSSETTVNLEGNPLSER 299 (622)
T ss_dssp GGGSCTTCEEECCSCCCCHH
T ss_pred HhhccccCEEEecCCCCCCc
Confidence 99999999999999999865
No 77
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.65 E-value=1.6e-15 Score=169.44 Aligned_cols=247 Identities=19% Similarity=0.225 Sum_probs=121.2
Q ss_pred CceeEEEeecCcccccc-ccccccccceEEecCCCCchhhhhhhhhhhcCCccccEEEecCCCCCCCCccccCCCCccEE
Q 003890 498 ANVKWCYIMKDLIEFFS-LEHSDIYLQSFLNHSSESDHLALIDCENFCEKFKHLRILNLGSAVLVQFPPGLENLFHLKYL 576 (788)
Q Consensus 498 ~~~r~Ls~~~~~~~~~~-~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~i~~L~~L~~L 576 (788)
.+++.|.+.++.....+ ... +++|+.|.+.++.... + |. ...+|++|++++|.++.+| .++++++|++|
T Consensus 131 ~~L~~L~L~~n~l~~lp~~~~-l~~L~~L~l~~N~l~~-l----p~---~~~~L~~L~L~~n~l~~l~-~~~~l~~L~~L 200 (454)
T 1jl5_A 131 PLLEYLGVSNNQLEKLPELQN-SSFLKIIDVDNNSLKK-L----PD---LPPSLEFIAAGNNQLEELP-ELQNLPFLTAI 200 (454)
T ss_dssp TTCCEEECCSSCCSSCCCCTT-CTTCCEEECCSSCCSC-C----CC---CCTTCCEEECCSSCCSSCC-CCTTCTTCCEE
T ss_pred CCCCEEECcCCCCCCCcccCC-CCCCCEEECCCCcCcc-c----CC---CcccccEEECcCCcCCcCc-cccCCCCCCEE
Confidence 34555555544433332 333 5555565555554311 1 11 1235555666665555555 45566666666
Q ss_pred EecCCCCcccChhhcCCCCCcEEEccCCCCcccchhhhcccccceeeccCccCCCCCcCCcCccccccccccccccccCc
Q 003890 577 KLNIPSLKCLPSLLCTLLNLQTLEMPSSYVDQSPEDIWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFISTLNPSSCTP 656 (788)
Q Consensus 577 ~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~lp~~l~~L~~L~~L~l~~~~~~~~i~~~~~~l~~L~~L~~~~~~~~~~ 656 (788)
++++|.+..+|... .+|++|++++|.+..+|. ++.+++|++|++++|.+.. +|. .+++|++|++.++....+
T Consensus 201 ~l~~N~l~~l~~~~---~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~l~~N~l~~-l~~---~~~~L~~L~l~~N~l~~l 272 (454)
T 1jl5_A 201 YADNNSLKKLPDLP---LSLESIVAGNNILEELPE-LQNLPFLTTIYADNNLLKT-LPD---LPPSLEALNVRDNYLTDL 272 (454)
T ss_dssp ECCSSCCSSCCCCC---TTCCEEECCSSCCSSCCC-CTTCTTCCEEECCSSCCSS-CCS---CCTTCCEEECCSSCCSCC
T ss_pred ECCCCcCCcCCCCc---CcccEEECcCCcCCcccc-cCCCCCCCEEECCCCcCCc-ccc---cccccCEEECCCCccccc
Confidence 66666655555322 356666666665556664 6666666666666665442 221 224555555543322221
Q ss_pred cccCCCCCCCeEEEEccCCcChhcHHHh-------------ccCC-CCCCEEEeecCCCCCcccccccCCCccccccc--
Q 003890 657 DILGRLPNVQTLRISGDLSCYHSGVSKS-------------LCEL-HKLECLKLVNERKPSRMVLYEYQFPPTDMARI-- 720 (788)
Q Consensus 657 ~~l~~L~~L~~L~l~~~~~~~~~~~~~~-------------l~~l-~~L~~L~L~~~~~~~~~~~~~~l~~~~~L~~L-- 720 (788)
+. .+++|+.|++++|.-......+.. +..+ ++|+.|+++++... .... .+++|++|
T Consensus 273 ~~--~~~~L~~L~ls~N~l~~l~~~~~~L~~L~l~~N~l~~i~~~~~~L~~L~Ls~N~l~---~lp~---~~~~L~~L~L 344 (454)
T 1jl5_A 273 PE--LPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLI---ELPA---LPPRLERLIA 344 (454)
T ss_dssp CC--CCTTCCEEECCSSCCSEESCCCTTCCEEECCSSCCSEECCCCTTCCEEECCSSCCS---CCCC---CCTTCCEEEC
T ss_pred Cc--ccCcCCEEECcCCccCcccCcCCcCCEEECcCCcCCcccCCcCcCCEEECCCCccc---cccc---cCCcCCEEEC
Confidence 11 124555555555540000011111 1122 46777777754332 1111 25788888
Q ss_pred -cccccccccCcccCCCCCcceEEEeccccccccccCCccccccc-------------ccCCeeEecccCc
Q 003890 721 -LSQLIRQEFVESEMSLPLLQLLDLEESDEEDDERSDILEILQDI-------------NDFVHESEEAIDT 777 (788)
Q Consensus 721 -~~~l~~~~lp~~l~~l~~L~~L~L~~~~l~~~~~~~~l~~l~~L-------------~~L~~L~L~~~~~ 777 (788)
.+.+ ..+|. .+++|++|+|++|++... +..+..++.+ ++|++|++++++-
T Consensus 345 ~~N~l--~~lp~---~l~~L~~L~L~~N~l~~l--~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l 408 (454)
T 1jl5_A 345 SFNHL--AEVPE---LPQNLKQLHVEYNPLREF--PDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPL 408 (454)
T ss_dssp CSSCC--SCCCC---CCTTCCEEECCSSCCSSC--CCCCTTCCEEECCC----------------------
T ss_pred CCCcc--ccccc---hhhhccEEECCCCCCCcC--CCChHHHHhhhhcccccccccccCcCCEEECCCCcC
Confidence 6677 67886 478999999999998862 0023456666 8899999998753
No 78
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.64 E-value=5.6e-16 Score=157.71 Aligned_cols=195 Identities=16% Similarity=0.093 Sum_probs=125.0
Q ss_pred cccEEEecCCCCCCCCc-cccCCCCccEEEecCCC-CcccCh-hhcCCCCCcEEEccC-CCCcccch-hhhcccccceee
Q 003890 549 HLRILNLGSAVLVQFPP-GLENLFHLKYLKLNIPS-LKCLPS-LLCTLLNLQTLEMPS-SYVDQSPE-DIWMMQKLMHLN 623 (788)
Q Consensus 549 ~L~~L~L~~~~l~~lp~-~i~~L~~L~~L~L~~~~-i~~lp~-~i~~L~~L~~L~L~~-~~l~~lp~-~l~~L~~L~~L~ 623 (788)
+|+.|++++|.++.+|. .+.++++|++|++++|. +..+|. .+.++++|++|++++ |.+..+|. .+.++++|++|+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~ 111 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence 67788888888776665 57777888888888875 777765 567778888888877 67777764 467777777777
Q ss_pred ccCccCCCCCcCCcCccccccccccccccccCccccCCCCCCCeEEEEcc-CCcChhcHHHhccCCCCCC-EEEeecCCC
Q 003890 624 FGSITLPAPPKNYSSSLKNLIFISTLNPSSCTPDILGRLPNVQTLRISGD-LSCYHSGVSKSLCELHKLE-CLKLVNERK 701 (788)
Q Consensus 624 l~~~~~~~~i~~~~~~l~~L~~L~~~~~~~~~~~~l~~L~~L~~L~l~~~-~~~~~~~~~~~l~~l~~L~-~L~L~~~~~ 701 (788)
+++|.+.. +|. |+.+++|+ .|+.|+++++ . .....+..+.++++|+ .|+++++..
T Consensus 112 l~~n~l~~-lp~-~~~l~~L~-------------------~L~~L~l~~N~~--l~~i~~~~~~~l~~L~~~L~l~~n~l 168 (239)
T 2xwt_C 112 IFNTGLKM-FPD-LTKVYSTD-------------------IFFILEITDNPY--MTSIPVNAFQGLCNETLTLKLYNNGF 168 (239)
T ss_dssp EEEECCCS-CCC-CTTCCBCC-------------------SEEEEEEESCTT--CCEECTTTTTTTBSSEEEEECCSCCC
T ss_pred CCCCCCcc-ccc-cccccccc-------------------cccEEECCCCcc--hhhcCcccccchhcceeEEEcCCCCC
Confidence 77665442 322 23333332 1226666666 3 2222223466677777 777775443
Q ss_pred CCcccccccCCCccccccc---cc-cccccccC-cccCCC-CCcceEEEeccccccccccCCcccccccccCCeeEeccc
Q 003890 702 PSRMVLYEYQFPPTDMARI---LS-QLIRQEFV-ESEMSL-PLLQLLDLEESDEEDDERSDILEILQDINDFVHESEEAI 775 (788)
Q Consensus 702 ~~~~~~~~~l~~~~~L~~L---~~-~l~~~~lp-~~l~~l-~~L~~L~L~~~~l~~~~~~~~l~~l~~L~~L~~L~L~~~ 775 (788)
.. .....+.. ++|++| .+ .+ ..+| ..+..+ ++|+.|+|++|++.. +|.- .+++|+.|+++++
T Consensus 169 ~~--i~~~~~~~-~~L~~L~L~~n~~l--~~i~~~~~~~l~~~L~~L~l~~N~l~~------l~~~-~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 169 TS--VQGYAFNG-TKLDAVYLNKNKYL--TVIDKDAFGGVYSGPSLLDVSQTSVTA------LPSK-GLEHLKELIARNT 236 (239)
T ss_dssp CE--ECTTTTTT-CEEEEEECTTCTTC--CEECTTTTTTCSBCCSEEECTTCCCCC------CCCT-TCTTCSEEECTTC
T ss_pred cc--cCHhhcCC-CCCCEEEcCCCCCc--ccCCHHHhhccccCCcEEECCCCcccc------CChh-HhccCceeeccCc
Confidence 30 11222333 677777 44 26 5554 457788 999999999999985 3332 7899999999988
Q ss_pred Cch
Q 003890 776 DTF 778 (788)
Q Consensus 776 ~~l 778 (788)
..+
T Consensus 237 ~~l 239 (239)
T 2xwt_C 237 WTL 239 (239)
T ss_dssp ---
T ss_pred cCC
Confidence 653
No 79
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.63 E-value=1e-16 Score=172.07 Aligned_cols=200 Identities=16% Similarity=0.141 Sum_probs=102.0
Q ss_pred CCccccEEEecCCCCCC--CCccccCCCCccEEEecCCCCc-ccChhhcCCCCCcEEEccCC-CCcc--cchhhhccccc
Q 003890 546 KFKHLRILNLGSAVLVQ--FPPGLENLFHLKYLKLNIPSLK-CLPSLLCTLLNLQTLEMPSS-YVDQ--SPEDIWMMQKL 619 (788)
Q Consensus 546 ~l~~L~~L~L~~~~l~~--lp~~i~~L~~L~~L~L~~~~i~-~lp~~i~~L~~L~~L~L~~~-~l~~--lp~~l~~L~~L 619 (788)
.+++|+.|++++|.+.. +|..+..+++|++|++++|.+. ..|..++.+++|++|++++| .+.. +|..+.++++|
T Consensus 91 ~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L 170 (336)
T 2ast_B 91 SPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRL 170 (336)
T ss_dssp CCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTC
T ss_pred cCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCC
Confidence 45555555555555441 4444555555555555555544 33445555555555555555 3442 44445555555
Q ss_pred ceeeccCc-cCCCCCcCCcCccccccccccccccccCccccCCCC-CCCeEEEEccC-CcChhcHHHhccCCCCCCEEEe
Q 003890 620 MHLNFGSI-TLPAPPKNYSSSLKNLIFISTLNPSSCTPDILGRLP-NVQTLRISGDL-SCYHSGVSKSLCELHKLECLKL 696 (788)
Q Consensus 620 ~~L~l~~~-~~~~~i~~~~~~l~~L~~L~~~~~~~~~~~~l~~L~-~L~~L~l~~~~-~~~~~~~~~~l~~l~~L~~L~L 696 (788)
++|++++| .+... .....+..++ +|+.|++++|. ......++..+.++++|+.|+|
T Consensus 171 ~~L~l~~~~~l~~~---------------------~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l 229 (336)
T 2ast_B 171 DELNLSWCFDFTEK---------------------HVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDL 229 (336)
T ss_dssp CEEECCCCTTCCHH---------------------HHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEEC
T ss_pred CEEcCCCCCCcChH---------------------HHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeC
Confidence 55555544 33211 0122244555 66666666663 1112445555566677777777
Q ss_pred ecCCCCCcccccccCCCccccccc---cc-cccccccCcccCCCCCcceEEEeccccccccccCCcccccccccCCeeEe
Q 003890 697 VNERKPSRMVLYEYQFPPTDMARI---LS-QLIRQEFVESEMSLPLLQLLDLEESDEEDDERSDILEILQDINDFVHESE 772 (788)
Q Consensus 697 ~~~~~~~~~~~~~~l~~~~~L~~L---~~-~l~~~~lp~~l~~l~~L~~L~L~~~~l~~~~~~~~l~~l~~L~~L~~L~L 772 (788)
+++....+ ..+..+..+++|++| .+ .+....+ ..+..+++|++|+|++| +... .+..+. .+|..|++
T Consensus 230 ~~~~~l~~-~~~~~l~~l~~L~~L~l~~~~~~~~~~~-~~l~~~~~L~~L~l~~~-i~~~----~~~~l~--~~l~~L~l 300 (336)
T 2ast_B 230 SDSVMLKN-DCFQEFFQLNYLQHLSLSRCYDIIPETL-LELGEIPTLKTLQVFGI-VPDG----TLQLLK--EALPHLQI 300 (336)
T ss_dssp TTCTTCCG-GGGGGGGGCTTCCEEECTTCTTCCGGGG-GGGGGCTTCCEEECTTS-SCTT----CHHHHH--HHSTTSEE
T ss_pred CCCCcCCH-HHHHHHhCCCCCCEeeCCCCCCCCHHHH-HHHhcCCCCCEEeccCc-cCHH----HHHHHH--hhCcceEE
Confidence 75542211 233445555666666 11 1211111 24667889999999988 5443 333332 23555666
Q ss_pred ccc
Q 003890 773 EAI 775 (788)
Q Consensus 773 ~~~ 775 (788)
+++
T Consensus 301 ~~n 303 (336)
T 2ast_B 301 NCS 303 (336)
T ss_dssp SCC
T ss_pred ecc
Confidence 654
No 80
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.63 E-value=7.9e-16 Score=159.87 Aligned_cols=206 Identities=17% Similarity=0.163 Sum_probs=152.1
Q ss_pred hhcCCccccEEEecCCCCCCCCccccCCCCccEEEecCCCCcccChhhcCCCCCcEEEccCCCCcccchh-hhcccccce
Q 003890 543 FCEKFKHLRILNLGSAVLVQFPPGLENLFHLKYLKLNIPSLKCLPSLLCTLLNLQTLEMPSSYVDQSPED-IWMMQKLMH 621 (788)
Q Consensus 543 ~~~~l~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~lp~~-l~~L~~L~~ 621 (788)
.+..+++|+.|++++|.+..++ .+..+++|++|++++|.+..++ .+.++++|++|++++|.+..+|.. +.++++|++
T Consensus 36 ~~~~l~~L~~L~l~~~~i~~~~-~l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 113 (272)
T 3rfs_A 36 TQNELNSIDQIIANNSDIKSVQ-GIQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKE 113 (272)
T ss_dssp CHHHHTTCCEEECTTSCCCCCT-TGGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCE
T ss_pred ccccccceeeeeeCCCCccccc-ccccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCCccCccChhHhcCCcCCCE
Confidence 3457889999999999998765 5889999999999999998875 789999999999999998888764 789999999
Q ss_pred eeccCccCCCCCcCCcCccccccccccccccccCcc--ccCCCCCCCeEEEEccCCcChhcHHHhccCCCCCCEEEeecC
Q 003890 622 LNFGSITLPAPPKNYSSSLKNLIFISTLNPSSCTPD--ILGRLPNVQTLRISGDLSCYHSGVSKSLCELHKLECLKLVNE 699 (788)
Q Consensus 622 L~l~~~~~~~~i~~~~~~l~~L~~L~~~~~~~~~~~--~l~~L~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~L~~~ 699 (788)
|++++|.+....+..|+.+++|++|++.++....+. .++.+++|+.|++++|. .....+..+..+++|+.|+|+++
T Consensus 114 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~--l~~~~~~~~~~l~~L~~L~L~~N 191 (272)
T 3rfs_A 114 LVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQ--LQSLPEGVFDKLTQLKDLRLYQN 191 (272)
T ss_dssp EECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC--CCCCCTTTTTTCTTCCEEECCSS
T ss_pred EECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCC--cCccCHHHhcCCccCCEEECCCC
Confidence 999999876554555688999999998865443333 36888999999999886 33333445678889999999865
Q ss_pred CCCCcccccccCCCccccccc---cccccccccCcccCCCCCcceEEEeccccccccccCCccccccccc
Q 003890 700 RKPSRMVLYEYQFPPTDMARI---LSQLIRQEFVESEMSLPLLQLLDLEESDEEDDERSDILEILQDIND 766 (788)
Q Consensus 700 ~~~~~~~~~~~l~~~~~L~~L---~~~l~~~~lp~~l~~l~~L~~L~L~~~~l~~~~~~~~l~~l~~L~~ 766 (788)
.... .....+..+++|+.| .|. +.+.+++|+.|+++.|.+.+. ....++.++.
T Consensus 192 ~l~~--~~~~~~~~l~~L~~L~l~~N~--------~~~~~~~l~~l~~~~n~~~g~----ip~~~~~~~~ 247 (272)
T 3rfs_A 192 QLKS--VPDGVFDRLTSLQYIWLHDNP--------WDCTCPGIRYLSEWINKHSGV----VRNSAGSVAP 247 (272)
T ss_dssp CCSC--CCTTTTTTCTTCCEEECCSSC--------BCCCTTTTHHHHHHHHHTGGG----BBCTTSCBCG
T ss_pred cCCc--cCHHHHhCCcCCCEEEccCCC--------ccccCcHHHHHHHHHHhCCCc----ccCcccccCC
Confidence 4431 223335556666666 222 224455677777777776654 3334454444
No 81
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.63 E-value=1.8e-16 Score=168.35 Aligned_cols=196 Identities=17% Similarity=0.126 Sum_probs=142.7
Q ss_pred CCccccEEEecCCCCC-CCCccc--cCCCCccEEEecCCCCcccChhhcCC-----CCCcEEEccCCCCcccc-hhhhcc
Q 003890 546 KFKHLRILNLGSAVLV-QFPPGL--ENLFHLKYLKLNIPSLKCLPSLLCTL-----LNLQTLEMPSSYVDQSP-EDIWMM 616 (788)
Q Consensus 546 ~l~~L~~L~L~~~~l~-~lp~~i--~~L~~L~~L~L~~~~i~~lp~~i~~L-----~~L~~L~L~~~~l~~lp-~~l~~L 616 (788)
++++|++|++++|.++ .+|..+ +.+++|++|++++|.+..+|..++.+ ++|++|++++|.+..+| ..++++
T Consensus 93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l 172 (312)
T 1wwl_A 93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVF 172 (312)
T ss_dssp TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCC
T ss_pred CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccC
Confidence 6788888888888887 677765 77888888888888888777777766 78888888888777776 468888
Q ss_pred cccceeeccCccCCCC--CcCC--cCccccccccccccccccCcc-----ccCCCCCCCeEEEEccCCcChhcHH-Hhcc
Q 003890 617 QKLMHLNFGSITLPAP--PKNY--SSSLKNLIFISTLNPSSCTPD-----ILGRLPNVQTLRISGDLSCYHSGVS-KSLC 686 (788)
Q Consensus 617 ~~L~~L~l~~~~~~~~--i~~~--~~~l~~L~~L~~~~~~~~~~~-----~l~~L~~L~~L~l~~~~~~~~~~~~-~~l~ 686 (788)
++|++|++++|.+... ++.. ++.+++|++|++.++....+. .+..+++|+.|++++|. .....+ ..+.
T Consensus 173 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~--l~~~~~~~~~~ 250 (312)
T 1wwl_A 173 PALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNS--LRDAAGAPSCD 250 (312)
T ss_dssp SSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSC--CCSSCCCSCCC
T ss_pred CCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCc--CCcccchhhhh
Confidence 8888888888764321 1111 267788888888765443221 13567889999998886 222222 3455
Q ss_pred CCCCCCEEEeecCCCCCcccccccCCCccccccc---cccccccccCcccCCCCCcceEEEecccccc
Q 003890 687 ELHKLECLKLVNERKPSRMVLYEYQFPPTDMARI---LSQLIRQEFVESEMSLPLLQLLDLEESDEED 751 (788)
Q Consensus 687 ~l~~L~~L~L~~~~~~~~~~~~~~l~~~~~L~~L---~~~l~~~~lp~~l~~l~~L~~L~L~~~~l~~ 751 (788)
.+++|+.|+|+++... ..+..+. ++|++| .|.+ ..+|. +..+++|++|+|++|++.+
T Consensus 251 ~l~~L~~L~Ls~N~l~---~ip~~~~--~~L~~L~Ls~N~l--~~~p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 251 WPSQLNSLNLSFTGLK---QVPKGLP--AKLSVLDLSYNRL--DRNPS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp CCTTCCEEECTTSCCS---SCCSSCC--SEEEEEECCSSCC--CSCCC-TTTSCEEEEEECTTCTTTC
T ss_pred hcCCCCEEECCCCccC---hhhhhcc--CCceEEECCCCCC--CCChh-HhhCCCCCEEeccCCCCCC
Confidence 6789999999976544 3344443 788888 6778 66786 8899999999999999875
No 82
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.63 E-value=1e-15 Score=162.28 Aligned_cols=227 Identities=12% Similarity=0.101 Sum_probs=136.6
Q ss_pred ccccceEEecCCCCchhhhhhhhhhhcCCccccEEEecCCCCC-CCCccc--cCCCCccEEEecCCCCccc-C----hhh
Q 003890 519 DIYLQSFLNHSSESDHLALIDCENFCEKFKHLRILNLGSAVLV-QFPPGL--ENLFHLKYLKLNIPSLKCL-P----SLL 590 (788)
Q Consensus 519 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~-~lp~~i--~~L~~L~~L~L~~~~i~~l-p----~~i 590 (788)
...++.+.+.+............. +..+++|+.|++++|.+. ..|..+ ..+.+|++|++++|.+... | ..+
T Consensus 63 ~~~l~~l~l~~~~~~~~~~~~~~~-~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~ 141 (310)
T 4glp_A 63 ALRVRRLTVGAAQVPAQLLVGALR-VLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQ 141 (310)
T ss_dssp SCCCCEEEECSCCCBHHHHHHHHH-HHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHT
T ss_pred hcceeEEEEeCCcCCHHHHHHHHH-hcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHh
Confidence 334566666665542211111111 223455888888888876 555665 7788888888888877642 2 234
Q ss_pred cCCCCCcEEEccCCCCcccch-hhhcccccceeeccCccCCCCCcCCcCccccccccccccccccCccccCCCCCCCeEE
Q 003890 591 CTLLNLQTLEMPSSYVDQSPE-DIWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFISTLNPSSCTPDILGRLPNVQTLR 669 (788)
Q Consensus 591 ~~L~~L~~L~L~~~~l~~lp~-~l~~L~~L~~L~l~~~~~~~~i~~~~~~l~~L~~L~~~~~~~~~~~~l~~L~~L~~L~ 669 (788)
..+++|++|++++|.+..+|. .++++++|++|++++|.+.... .+ .....++.+++|+.|+
T Consensus 142 ~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-----~~-------------~~~~~~~~l~~L~~L~ 203 (310)
T 4glp_A 142 WLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGER-----GL-------------MAALCPHKFPAIQNLA 203 (310)
T ss_dssp TBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHH-----HH-------------HTTSCTTSSCCCCSCB
T ss_pred hhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccch-----hh-------------hHHHhhhcCCCCCEEE
Confidence 567788888888887766653 5777778888887777543110 00 0001123455566666
Q ss_pred EEccCCcChhcHHHh-ccCCCCCCEEEeecCCCCCcccccccCCC---ccccccc---cccccccccCcccCCCCCcceE
Q 003890 670 ISGDLSCYHSGVSKS-LCELHKLECLKLVNERKPSRMVLYEYQFP---PTDMARI---LSQLIRQEFVESEMSLPLLQLL 742 (788)
Q Consensus 670 l~~~~~~~~~~~~~~-l~~l~~L~~L~L~~~~~~~~~~~~~~l~~---~~~L~~L---~~~l~~~~lp~~l~~l~~L~~L 742 (788)
+++|.-......+.. +..+++|+.|+|+++.... ..+..+.. +++|++| .|.+ ..+|.++. ++|+.|
T Consensus 204 Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~--~~p~~~~~~~~~~~L~~L~Ls~N~l--~~lp~~~~--~~L~~L 277 (310)
T 4glp_A 204 LRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRA--TVNPSAPRCMWSSALNSLNLSFAGL--EQVPKGLP--AKLRVL 277 (310)
T ss_dssp CCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCC--CCCSCCSSCCCCTTCCCEECCSSCC--CSCCSCCC--SCCSCE
T ss_pred CCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCc--cchhhHHhccCcCcCCEEECCCCCC--Cchhhhhc--CCCCEE
Confidence 666541111222222 3566777777777554331 11222333 3577777 5667 57787664 899999
Q ss_pred EEeccccccccccCCcccccccccCCeeEecccC
Q 003890 743 DLEESDEEDDERSDILEILQDINDFVHESEEAID 776 (788)
Q Consensus 743 ~L~~~~l~~~~~~~~l~~l~~L~~L~~L~L~~~~ 776 (788)
+|++|++.. +|.+..+++|+.|+|++++
T Consensus 278 ~Ls~N~l~~------~~~~~~l~~L~~L~L~~N~ 305 (310)
T 4glp_A 278 DLSSNRLNR------APQPDELPEVDNLTLDGNP 305 (310)
T ss_dssp ECCSCCCCS------CCCTTSCCCCSCEECSSTT
T ss_pred ECCCCcCCC------CchhhhCCCccEEECcCCC
Confidence 999999984 4557889999999999886
No 83
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.62 E-value=3.8e-15 Score=156.07 Aligned_cols=195 Identities=19% Similarity=0.098 Sum_probs=159.3
Q ss_pred CCceeEEEeecCccccccccccccccceEEecCCCCchhhhhhhhhhhcCCccccEEEecCCCCCCCCccccCCCCccEE
Q 003890 497 PANVKWCYIMKDLIEFFSLEHSDIYLQSFLNHSSESDHLALIDCENFCEKFKHLRILNLGSAVLVQFPPGLENLFHLKYL 576 (788)
Q Consensus 497 ~~~~r~Ls~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~i~~L~~L~~L 576 (788)
..+++.+.+.++.....+..- .++++.|.+.++... ...+..|..+++|++|+|++|.++.+|.. +.+.+|++|
T Consensus 9 l~~l~~l~~~~~~l~~ip~~~-~~~l~~L~L~~N~l~----~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~~L 82 (290)
T 1p9a_G 9 VASHLEVNCDKRNLTALPPDL-PKDTTILHLSENLLY----TFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGTL 82 (290)
T ss_dssp STTCCEEECTTSCCSSCCSCC-CTTCCEEECTTSCCS----EEEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTCCEE
T ss_pred cCCccEEECCCCCCCcCCCCC-CCCCCEEEcCCCcCC----ccCHHHhhcCCCCCEEECCCCccCcccCC-CCCCcCCEE
Confidence 345677777776665555333 678999999988863 23347899999999999999999987654 789999999
Q ss_pred EecCCCCcccChhhcCCCCCcEEEccCCCCcccch-hhhcccccceeeccCccCCCCCcCCcCccccccccccccccccC
Q 003890 577 KLNIPSLKCLPSLLCTLLNLQTLEMPSSYVDQSPE-DIWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFISTLNPSSCT 655 (788)
Q Consensus 577 ~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~lp~-~l~~L~~L~~L~l~~~~~~~~i~~~~~~l~~L~~L~~~~~~~~~ 655 (788)
++++|.+..+|..+..+++|++|++++|.+..+|. .+.++++|++|++++|.+....+..|..+++|+.|++.++....
T Consensus 83 ~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 162 (290)
T 1p9a_G 83 DLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTE 162 (290)
T ss_dssp ECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSC
T ss_pred ECCCCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCc
Confidence 99999999999999999999999999999999875 68999999999999997765444556889999999998765443
Q ss_pred cc--ccCCCCCCCeEEEEccCCcChhcHHHhccCCCCCCEEEeecCC
Q 003890 656 PD--ILGRLPNVQTLRISGDLSCYHSGVSKSLCELHKLECLKLVNER 700 (788)
Q Consensus 656 ~~--~l~~L~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~ 700 (788)
+. .+..+++|+.|++++|. ...++..+..+.+|+.|+|+++.
T Consensus 163 l~~~~~~~l~~L~~L~L~~N~---l~~ip~~~~~~~~L~~l~L~~Np 206 (290)
T 1p9a_G 163 LPAGLLNGLENLDTLLLQENS---LYTIPKGFFGSHLLPFAFLHGNP 206 (290)
T ss_dssp CCTTTTTTCTTCCEEECCSSC---CCCCCTTTTTTCCCSEEECCSCC
T ss_pred cCHHHhcCcCCCCEEECCCCc---CCccChhhcccccCCeEEeCCCC
Confidence 33 36789999999999986 55777788888899999999654
No 84
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.60 E-value=2.8e-15 Score=157.29 Aligned_cols=102 Identities=20% Similarity=0.235 Sum_probs=49.9
Q ss_pred ccccceEEecCCCCchhhhhhhhhhhcCCccccEEEecCCCCCCCCccccCCCCccEEEecCCCCcccChhhcCCCCCcE
Q 003890 519 DIYLQSFLNHSSESDHLALIDCENFCEKFKHLRILNLGSAVLVQFPPGLENLFHLKYLKLNIPSLKCLPSLLCTLLNLQT 598 (788)
Q Consensus 519 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~lp~~i~~L~~L~~ 598 (788)
+++|+.|.+.++... .+ +.+..+++|+.|++++|.++.++. +..+++|++|++++|.+..+| .+.++++|++
T Consensus 45 l~~L~~L~l~~~~i~-~~-----~~~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~ 116 (291)
T 1h6t_A 45 LNSIDQIIANNSDIK-SV-----QGIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKDLS-SLKDLKKLKS 116 (291)
T ss_dssp HHTCCEEECTTSCCC-CC-----TTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCGG-GGTTCTTCCE
T ss_pred cCcccEEEccCCCcc-cC-----hhHhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCcCCCCh-hhccCCCCCE
Confidence 445555555544431 11 224445555555555555554443 555555555555555555443 2455555555
Q ss_pred EEccCCCCcccchhhhcccccceeeccCccC
Q 003890 599 LEMPSSYVDQSPEDIWMMQKLMHLNFGSITL 629 (788)
Q Consensus 599 L~L~~~~l~~lp~~l~~L~~L~~L~l~~~~~ 629 (788)
|++++|.+..++. +..+++|++|++++|.+
T Consensus 117 L~L~~n~i~~~~~-l~~l~~L~~L~l~~n~l 146 (291)
T 1h6t_A 117 LSLEHNGISDING-LVHLPQLESLYLGNNKI 146 (291)
T ss_dssp EECTTSCCCCCGG-GGGCTTCCEEECCSSCC
T ss_pred EECCCCcCCCChh-hcCCCCCCEEEccCCcC
Confidence 5555555444432 45555555555554433
No 85
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.58 E-value=7.6e-17 Score=181.06 Aligned_cols=253 Identities=12% Similarity=0.048 Sum_probs=127.2
Q ss_pred ccccceEEecCCCCchhhhhhhhhhhcCCc----cccEEEecCCCCC-----CCCccccCCCCccEEEecCCCCccc-Ch
Q 003890 519 DIYLQSFLNHSSESDHLALIDCENFCEKFK----HLRILNLGSAVLV-----QFPPGLENLFHLKYLKLNIPSLKCL-PS 588 (788)
Q Consensus 519 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~----~L~~L~L~~~~l~-----~lp~~i~~L~~L~~L~L~~~~i~~l-p~ 588 (788)
+++|++|.+.++....... ...+..++ +|++|++++|.++ .+|..+..+++|++|++++|.+... +.
T Consensus 55 ~~~L~~L~Ls~n~l~~~~~---~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~ 131 (461)
T 1z7x_W 55 NPALAELNLRSNELGDVGV---HCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQ 131 (461)
T ss_dssp CTTCCEEECTTCCCHHHHH---HHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHH
T ss_pred CCCcCEEeCCCCcCChHHH---HHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHH
Confidence 4566666666555422111 12222333 4666666666655 2355556666666666666655422 22
Q ss_pred hh-----cCCCCCcEEEccCCCCcc-----cchhhhcccccceeeccCccCCCCCcCCcC-----ccccccccccccccc
Q 003890 589 LL-----CTLLNLQTLEMPSSYVDQ-----SPEDIWMMQKLMHLNFGSITLPAPPKNYSS-----SLKNLIFISTLNPSS 653 (788)
Q Consensus 589 ~i-----~~L~~L~~L~L~~~~l~~-----lp~~l~~L~~L~~L~l~~~~~~~~i~~~~~-----~l~~L~~L~~~~~~~ 653 (788)
.+ ..+.+|++|++++|.+.. ++..+..+++|++|++++|.+....+..+. ..++|++|++.++..
T Consensus 132 ~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l 211 (461)
T 1z7x_W 132 LLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGV 211 (461)
T ss_dssp HHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCC
T ss_pred HHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCC
Confidence 11 123456666666664443 344455566666666666544321100001 133666666664432
Q ss_pred cC------ccccCCCCCCCeEEEEccCCcChhc----H-HHhccCCCCCCEEEeecCCCCCcc--cccccCCCccccccc
Q 003890 654 CT------PDILGRLPNVQTLRISGDLSCYHSG----V-SKSLCELHKLECLKLVNERKPSRM--VLYEYQFPPTDMARI 720 (788)
Q Consensus 654 ~~------~~~l~~L~~L~~L~l~~~~~~~~~~----~-~~~l~~l~~L~~L~L~~~~~~~~~--~~~~~l~~~~~L~~L 720 (788)
.. +..+..+++|+.|++++|. .... + +..+..+++|+.|+|+++...... .....+..+++|++|
T Consensus 212 ~~~~~~~l~~~l~~~~~L~~L~Ls~n~--l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L 289 (461)
T 1z7x_W 212 TSDNCRDLCGIVASKASLRELALGSNK--LGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKEL 289 (461)
T ss_dssp BTTHHHHHHHHHHHCTTCCEEECCSSB--CHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEE
T ss_pred cHHHHHHHHHHHHhCCCccEEeccCCc--CChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceE
Confidence 22 2335566777777777765 2221 1 122234677777777755433100 023334446677777
Q ss_pred ---ccccccc---ccCcccC-CCCCcceEEEeccccccccccCCcccccccccCCeeEecccC
Q 003890 721 ---LSQLIRQ---EFVESEM-SLPLLQLLDLEESDEEDDERSDILEILQDINDFVHESEEAID 776 (788)
Q Consensus 721 ---~~~l~~~---~lp~~l~-~l~~L~~L~L~~~~l~~~~~~~~l~~l~~L~~L~~L~L~~~~ 776 (788)
.+.+.+. .++..+. ..++|++|+|++|.+...+.......+..+++|++|+|++|.
T Consensus 290 ~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~ 352 (461)
T 1z7x_W 290 SLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNR 352 (461)
T ss_dssp ECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSB
T ss_pred ECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCc
Confidence 3444111 1222222 236888888888887654000001235567889999988884
No 86
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.57 E-value=4.3e-15 Score=171.04 Aligned_cols=145 Identities=20% Similarity=0.195 Sum_probs=72.8
Q ss_pred ccccceEEecCCCCchhhhhhhhhhhcCCccccEEEecCCCCCCCCccccCCCCccEEEecCCCCcccChhhcCCCCCcE
Q 003890 519 DIYLQSFLNHSSESDHLALIDCENFCEKFKHLRILNLGSAVLVQFPPGLENLFHLKYLKLNIPSLKCLPSLLCTLLNLQT 598 (788)
Q Consensus 519 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~lp~~i~~L~~L~~ 598 (788)
+++|+.|.+.++... .+ +.+..+++|+.|+|++|.+..+|. +..+.+|++|+|++|.+..+| .+..+++|++
T Consensus 42 L~~L~~L~l~~n~i~-~l-----~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~ 113 (605)
T 1m9s_A 42 LNSIDQIIANNSDIK-SV-----QGIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENKIKDLS-SLKDLKKLKS 113 (605)
T ss_dssp HTTCCCCBCTTCCCC-CC-----TTGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCCCT-TSTTCTTCCE
T ss_pred CCCCCEEECcCCCCC-CC-----hHHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCCCCCCh-hhccCCCCCE
Confidence 455555555554431 11 234555556666666655555544 555556666666655555544 4555555666
Q ss_pred EEccCCCCcccchhhhcccccceeeccCccCCCCCcCCcCccccccccccccccccCccccCCCCCCCeEEEEccC
Q 003890 599 LEMPSSYVDQSPEDIWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFISTLNPSSCTPDILGRLPNVQTLRISGDL 674 (788)
Q Consensus 599 L~L~~~~l~~lp~~l~~L~~L~~L~l~~~~~~~~i~~~~~~l~~L~~L~~~~~~~~~~~~l~~L~~L~~L~l~~~~ 674 (788)
|+|++|.+..+|. +..|++|+.|++++|.+.. + ..++.+++|+.|++.++....+..+..+++|+.|+|++|.
T Consensus 114 L~Ls~N~l~~l~~-l~~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~ 186 (605)
T 1m9s_A 114 LSLEHNGISDING-LVHLPQLESLYLGNNKITD-I-TVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNH 186 (605)
T ss_dssp EECTTSCCCCCGG-GGGCTTCSEEECCSSCCCC-C-GGGGSCTTCSEEECCSSCCCCCGGGTTCTTCCEEECCSSC
T ss_pred EEecCCCCCCCcc-ccCCCccCEEECCCCccCC-c-hhhcccCCCCEEECcCCcCCCchhhccCCCCCEEECcCCC
Confidence 6665555555443 5555555555555554432 1 2224444444444443333222224444444444444443
No 87
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.57 E-value=2.8e-14 Score=146.28 Aligned_cols=81 Identities=23% Similarity=0.315 Sum_probs=37.3
Q ss_pred cccEEEecCCCCCCCC-ccccCCCCccEEEecCCCCcccCh-hhcCCCCCcEEEccCCCCcccch-hhhcccccceeecc
Q 003890 549 HLRILNLGSAVLVQFP-PGLENLFHLKYLKLNIPSLKCLPS-LLCTLLNLQTLEMPSSYVDQSPE-DIWMMQKLMHLNFG 625 (788)
Q Consensus 549 ~L~~L~L~~~~l~~lp-~~i~~L~~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~l~~lp~-~l~~L~~L~~L~l~ 625 (788)
+|+.|+|++|.+..++ ..+.++.+|++|++++|.+..++. .+.++++|++|++++|.+..+|. .+..+++|++|+++
T Consensus 36 ~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 115 (251)
T 3m19_A 36 DTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLG 115 (251)
T ss_dssp TCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcC
Confidence 4445555555544332 234444555555555554444332 23444555555555554444443 23444455555554
Q ss_pred CccC
Q 003890 626 SITL 629 (788)
Q Consensus 626 ~~~~ 629 (788)
+|.+
T Consensus 116 ~N~l 119 (251)
T 3m19_A 116 GNQL 119 (251)
T ss_dssp SSCC
T ss_pred CCcC
Confidence 4433
No 88
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.56 E-value=5.2e-15 Score=168.48 Aligned_cols=185 Identities=18% Similarity=0.149 Sum_probs=127.5
Q ss_pred cccEEEecCCCCCCCCccccCCCCccEEEecCCCCcccChhhcCCCCCcEEEccCCCCcccchhhhcccccceeeccCcc
Q 003890 549 HLRILNLGSAVLVQFPPGLENLFHLKYLKLNIPSLKCLPSLLCTLLNLQTLEMPSSYVDQSPEDIWMMQKLMHLNFGSIT 628 (788)
Q Consensus 549 ~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~lp~~l~~L~~L~~L~l~~~~ 628 (788)
+|+.|+|++|.++.+|..+. .+|++|++++|.+..+| ..+++|++|++++|.+..+|. +.+ +|++|++++|.
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l~--~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls~N~ 131 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNLP--PQITVLEITQNALISLP---ELPASLEYLDACDNRLSTLPE-LPA--SLKHLDVDNNQ 131 (571)
T ss_dssp TCSEEECCSSCCSCCCSCCC--TTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCCSCCCC-CCT--TCCEEECCSSC
T ss_pred CccEEEeCCCCCCccCHhHc--CCCCEEECcCCCCcccc---cccCCCCEEEccCCCCCCcch-hhc--CCCEEECCCCc
Confidence 67778888777777776663 67788888877777777 456777888887777777776 554 77788877776
Q ss_pred CCCCCcCCcCccccccccccccccccCccccCCCCCCCeEEEEccCCcChhcHHHhccCCCCCCEEEeecCCCCCccccc
Q 003890 629 LPAPPKNYSSSLKNLIFISTLNPSSCTPDILGRLPNVQTLRISGDLSCYHSGVSKSLCELHKLECLKLVNERKPSRMVLY 708 (788)
Q Consensus 629 ~~~~i~~~~~~l~~L~~L~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~ 708 (788)
+.. +|. .+++|+.|++.++....++. .+++|+.|++++|. ...++. +. ++|+.|+|+++... ..+
T Consensus 132 l~~-lp~---~l~~L~~L~Ls~N~l~~lp~--~l~~L~~L~Ls~N~---L~~lp~-l~--~~L~~L~Ls~N~L~---~lp 196 (571)
T 3cvr_A 132 LTM-LPE---LPALLEYINADNNQLTMLPE--LPTSLEVLSVRNNQ---LTFLPE-LP--ESLEALDVSTNLLE---SLP 196 (571)
T ss_dssp CSC-CCC---CCTTCCEEECCSSCCSCCCC--CCTTCCEEECCSSC---CSCCCC-CC--TTCCEEECCSSCCS---SCC
T ss_pred CCC-CCC---cCccccEEeCCCCccCcCCC--cCCCcCEEECCCCC---CCCcch-hh--CCCCEEECcCCCCC---chh
Confidence 654 443 56677777777654443433 56788888888886 233444 44 78888888865443 222
Q ss_pred ccCCCcccc-------ccc---cccccccccCcccCCCCCcceEEEeccccccccccCCcccccccc
Q 003890 709 EYQFPPTDM-------ARI---LSQLIRQEFVESEMSLPLLQLLDLEESDEEDDERSDILEILQDIN 765 (788)
Q Consensus 709 ~~l~~~~~L-------~~L---~~~l~~~~lp~~l~~l~~L~~L~L~~~~l~~~~~~~~l~~l~~L~ 765 (788)
. +.. +| +.| .|.+ ..+|.++..+++|+.|+|++|++.+. .+..++.++
T Consensus 197 ~-~~~--~L~~~~~~L~~L~Ls~N~l--~~lp~~l~~l~~L~~L~L~~N~l~~~----~p~~l~~l~ 254 (571)
T 3cvr_A 197 A-VPV--RNHHSEETEIFFRCRENRI--THIPENILSLDPTCTIILEDNPLSSR----IRESLSQQT 254 (571)
T ss_dssp C-CC----------CCEEEECCSSCC--CCCCGGGGGSCTTEEEECCSSSCCHH----HHHHHHHHH
T ss_pred h-HHH--hhhcccccceEEecCCCcc--eecCHHHhcCCCCCEEEeeCCcCCCc----CHHHHHHhh
Confidence 2 332 66 777 6777 78898888899999999999999875 445555543
No 89
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.55 E-value=7.5e-15 Score=149.33 Aligned_cols=196 Identities=12% Similarity=0.061 Sum_probs=133.8
Q ss_pred ccccceEEecCCCCchhhhhhhhhhhcCCccccEEEecCCC-CCCCCc-cccCCCCccEEEecC-CCCcccCh-hhcCCC
Q 003890 519 DIYLQSFLNHSSESDHLALIDCENFCEKFKHLRILNLGSAV-LVQFPP-GLENLFHLKYLKLNI-PSLKCLPS-LLCTLL 594 (788)
Q Consensus 519 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~-l~~lp~-~i~~L~~L~~L~L~~-~~i~~lp~-~i~~L~ 594 (788)
.++|+.|.+.++... .+++..|..+++|+.|++++|. ++.+|. .+.++++|++|++++ |.+..+|. .+.+++
T Consensus 30 ~~~l~~L~l~~n~l~----~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~ 105 (239)
T 2xwt_C 30 PPSTQTLKLIETHLR----TIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELP 105 (239)
T ss_dssp CTTCCEEEEESCCCS----EECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCT
T ss_pred CCcccEEEEeCCcce----EECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCC
Confidence 568999999998763 2344689999999999999997 887775 689999999999998 99998874 678999
Q ss_pred CCcEEEccCCCCcccchhhhcccccc---eeeccCc-cCCCCCcCCcCcccccc-ccccccccccCc-cccCCCCCCCeE
Q 003890 595 NLQTLEMPSSYVDQSPEDIWMMQKLM---HLNFGSI-TLPAPPKNYSSSLKNLI-FISTLNPSSCTP-DILGRLPNVQTL 668 (788)
Q Consensus 595 ~L~~L~L~~~~l~~lp~~l~~L~~L~---~L~l~~~-~~~~~i~~~~~~l~~L~-~L~~~~~~~~~~-~~l~~L~~L~~L 668 (788)
+|++|++++|.+..+|. +..+++|+ +|++++| .+..-.+..|..+++|+ +|++.++....+ ......++|+.|
T Consensus 106 ~L~~L~l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~~~L~~L 184 (239)
T 2xwt_C 106 LLKFLGIFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAV 184 (239)
T ss_dssp TCCEEEEEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTTCEEEEE
T ss_pred CCCEEeCCCCCCccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCCCCCCEE
Confidence 99999999999999998 88888888 9999988 55432222346666666 666554322211 111112445555
Q ss_pred EEEccCCcChhcH-HHhccCC-CCCCEEEeecCCCCCcccccccCCCccccccccccccccccCcccCCCCCcceEEEec
Q 003890 669 RISGDLSCYHSGV-SKSLCEL-HKLECLKLVNERKPSRMVLYEYQFPPTDMARILSQLIRQEFVESEMSLPLLQLLDLEE 746 (788)
Q Consensus 669 ~l~~~~~~~~~~~-~~~l~~l-~~L~~L~L~~~~~~~~~~~~~~l~~~~~L~~L~~~l~~~~lp~~l~~l~~L~~L~L~~ 746 (788)
+++++. ....+ +..+..+ ++|+.|+|+ .+.+ ..+|.. .+++|+.|++++
T Consensus 185 ~L~~n~--~l~~i~~~~~~~l~~~L~~L~l~-----------------------~N~l--~~l~~~--~~~~L~~L~l~~ 235 (239)
T 2xwt_C 185 YLNKNK--YLTVIDKDAFGGVYSGPSLLDVS-----------------------QTSV--TALPSK--GLEHLKELIARN 235 (239)
T ss_dssp ECTTCT--TCCEECTTTTTTCSBCCSEEECT-----------------------TCCC--CCCCCT--TCTTCSEEECTT
T ss_pred EcCCCC--CcccCCHHHhhccccCCcEEECC-----------------------CCcc--ccCChh--HhccCceeeccC
Confidence 555441 01111 2234444 445555544 3444 456643 678888888877
Q ss_pred cc
Q 003890 747 SD 748 (788)
Q Consensus 747 ~~ 748 (788)
|.
T Consensus 236 ~~ 237 (239)
T 2xwt_C 236 TW 237 (239)
T ss_dssp C-
T ss_pred cc
Confidence 64
No 90
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.55 E-value=4.4e-15 Score=170.91 Aligned_cols=188 Identities=18% Similarity=0.173 Sum_probs=125.5
Q ss_pred hcCCccccEEEecCCCCCCCCccccCCCCccEEEecCCCCcccChhhcCCCCCcEEEccCCCCcccchhhhcccccceee
Q 003890 544 CEKFKHLRILNLGSAVLVQFPPGLENLFHLKYLKLNIPSLKCLPSLLCTLLNLQTLEMPSSYVDQSPEDIWMMQKLMHLN 623 (788)
Q Consensus 544 ~~~l~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~lp~~l~~L~~L~~L~ 623 (788)
+..+++|+.|++++|.+..+| .+..+++|++|+|++|.+..+|+ +.++++|+.|+|++|.+..+| .+..+++|++|+
T Consensus 39 ~~~L~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~ 115 (605)
T 1m9s_A 39 QNELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENKIKDLS-SLKDLKKLKSLS 115 (605)
T ss_dssp HHHHTTCCCCBCTTCCCCCCT-TGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCCCT-TSTTCTTCCEEE
T ss_pred hhcCCCCCEEECcCCCCCCCh-HHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCCCCCCh-hhccCCCCCEEE
Confidence 456777888888888887776 57888888888888888887765 788888888888888777776 477888888888
Q ss_pred ccCccCCCCCcCCcCccccccccccccccccCccccCCCCCCCeEEEEccCCcChhcHHHhccCCCCCCEEEeecCCCCC
Q 003890 624 FGSITLPAPPKNYSSSLKNLIFISTLNPSSCTPDILGRLPNVQTLRISGDLSCYHSGVSKSLCELHKLECLKLVNERKPS 703 (788)
Q Consensus 624 l~~~~~~~~i~~~~~~l~~L~~L~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~ 703 (788)
+++|.+.. + +.++.+++|+.|++.++....+..+..+++|+.|+|++|. . ...+. +..+++|+.|+|++
T Consensus 116 Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~--l-~~~~~-l~~l~~L~~L~Ls~----- 184 (605)
T 1m9s_A 116 LEHNGISD-I-NGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQ--I-SDIVP-LAGLTKLQNLYLSK----- 184 (605)
T ss_dssp CTTSCCCC-C-GGGGGCTTCSEEECCSSCCCCCGGGGSCTTCSEEECCSSC--C-CCCGG-GTTCTTCCEEECCS-----
T ss_pred ecCCCCCC-C-ccccCCCccCEEECCCCccCCchhhcccCCCCEEECcCCc--C-CCchh-hccCCCCCEEECcC-----
Confidence 88776543 2 1235555666666555444444455555555555555554 1 11111 45555555555553
Q ss_pred cccccccCCCccccccccccccccccCcccCCCCCcceEEEeccccccccccCCcccccccccCCee
Q 003890 704 RMVLYEYQFPPTDMARILSQLIRQEFVESEMSLPLLQLLDLEESDEEDDERSDILEILQDINDFVHE 770 (788)
Q Consensus 704 ~~~~~~~l~~~~~L~~L~~~l~~~~lp~~l~~l~~L~~L~L~~~~l~~~~~~~~l~~l~~L~~L~~L 770 (788)
|.+ ..+| .+..+++|+.|+|++|++... ++..+..+..+..|
T Consensus 185 ------------------N~i--~~l~-~l~~l~~L~~L~L~~N~l~~~----p~~~~~~l~~~~~l 226 (605)
T 1m9s_A 185 ------------------NHI--SDLR-ALAGLKNLDVLELFSQECLNK----PINHQSNLVVPNTV 226 (605)
T ss_dssp ------------------SCC--CBCG-GGTTCTTCSEEECCSEEEECC----CCCCCSSCEEECCC
T ss_pred ------------------CCC--CCCh-HHccCCCCCEEEccCCcCcCC----cccccccEEecccc
Confidence 344 4455 578899999999999999876 55555555544444
No 91
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.54 E-value=1.9e-15 Score=165.58 Aligned_cols=247 Identities=13% Similarity=0.008 Sum_probs=171.1
Q ss_pred CceeEEEeecCccccc------c-ccccccccceEEecCCCCc---hhh---hhhhhhhhcCCccccEEEecCCCCCC--
Q 003890 498 ANVKWCYIMKDLIEFF------S-LEHSDIYLQSFLNHSSESD---HLA---LIDCENFCEKFKHLRILNLGSAVLVQ-- 562 (788)
Q Consensus 498 ~~~r~Ls~~~~~~~~~------~-~~~~~~~Lr~L~l~~~~~~---~~~---~~~~~~~~~~l~~L~~L~L~~~~l~~-- 562 (788)
.++++|.+.++..... . ... +++|+.|.+.++... ..+ ...+...|..+++|++|+|++|.+..
T Consensus 32 ~~L~~L~L~~n~i~~~~~~~l~~~l~~-~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~ 110 (386)
T 2ca6_A 32 DSVKEIVLSGNTIGTEAARWLSENIAS-KKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTA 110 (386)
T ss_dssp SCCCEEECTTSEECHHHHHHHHHTTTT-CTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTT
T ss_pred CCccEEECCCCCCCHHHHHHHHHHHHh-CCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHH
Confidence 4578899987765422 1 345 899999999987542 111 11223456899999999999999885
Q ss_pred ---CCccccCCCCccEEEecCCCCcc-----cChhhcCC---------CCCcEEEccCCCCc--ccc---hhhhcccccc
Q 003890 563 ---FPPGLENLFHLKYLKLNIPSLKC-----LPSLLCTL---------LNLQTLEMPSSYVD--QSP---EDIWMMQKLM 620 (788)
Q Consensus 563 ---lp~~i~~L~~L~~L~L~~~~i~~-----lp~~i~~L---------~~L~~L~L~~~~l~--~lp---~~l~~L~~L~ 620 (788)
+|..+..+++|++|+|++|.+.. ++..+..+ ++|++|++++|.+. .+| ..+..+++|+
T Consensus 111 ~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~ 190 (386)
T 2ca6_A 111 QEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLH 190 (386)
T ss_dssp HHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCC
T ss_pred HHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcC
Confidence 77888999999999999999863 33344455 89999999999775 455 4678899999
Q ss_pred eeeccCccCCC-----CCcCCcCccccccccccccccc------cCccccCCCCCCCeEEEEccCCc--ChhcHHHhcc-
Q 003890 621 HLNFGSITLPA-----PPKNYSSSLKNLIFISTLNPSS------CTPDILGRLPNVQTLRISGDLSC--YHSGVSKSLC- 686 (788)
Q Consensus 621 ~L~l~~~~~~~-----~i~~~~~~l~~L~~L~~~~~~~------~~~~~l~~L~~L~~L~l~~~~~~--~~~~~~~~l~- 686 (788)
+|++++|.+.. .++..+..+++|++|++.++.. ..+..+..+++|+.|++++|.-. ....++..+.
T Consensus 191 ~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~ 270 (386)
T 2ca6_A 191 TVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSK 270 (386)
T ss_dssp EEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHT
T ss_pred EEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhh
Confidence 99999987652 1222448899999999986543 23456789999999999999711 1123566664
Q ss_pred -CCCCCCEEEeecCCCCCcc--cccccC-CCccccccc---cccccccccC---cccC-CCCCcceEEEecc
Q 003890 687 -ELHKLECLKLVNERKPSRM--VLYEYQ-FPPTDMARI---LSQLIRQEFV---ESEM-SLPLLQLLDLEES 747 (788)
Q Consensus 687 -~l~~L~~L~L~~~~~~~~~--~~~~~l-~~~~~L~~L---~~~l~~~~lp---~~l~-~l~~L~~L~L~~~ 747 (788)
.+++|+.|+|+++...... ..+..+ ..+++|++| .|.+ ...+ ..+. .++.++.+.+...
T Consensus 271 ~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l--~~~~~~~~~l~~~l~~~~~~~l~~~ 340 (386)
T 2ca6_A 271 LENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRF--SEEDDVVDEIREVFSTRGRGELDEL 340 (386)
T ss_dssp CSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBS--CTTSHHHHHHHHHHHHHTCCEECCC
T ss_pred ccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcC--CcchhHHHHHHHHhhhcCcchhhhc
Confidence 4899999999976554100 023344 346889999 5566 2222 2222 2566666666544
No 92
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.53 E-value=5e-14 Score=147.66 Aligned_cols=165 Identities=15% Similarity=0.114 Sum_probs=107.9
Q ss_pred CceeEEEeecCcccccc-ccccccccceEEecCCCCchhhhhhhhhhhcCCccccEEEecCCCCCCCCccccCCCCccEE
Q 003890 498 ANVKWCYIMKDLIEFFS-LEHSDIYLQSFLNHSSESDHLALIDCENFCEKFKHLRILNLGSAVLVQFPPGLENLFHLKYL 576 (788)
Q Consensus 498 ~~~r~Ls~~~~~~~~~~-~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~i~~L~~L~~L 576 (788)
.+++.|.+.++.....+ ... +++|+.|.+.++.... + . . +..+++|++|++++|.++.+|. +..+.+|++|
T Consensus 46 ~~L~~L~l~~~~i~~~~~~~~-l~~L~~L~L~~n~l~~-~---~-~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L 117 (291)
T 1h6t_A 46 NSIDQIIANNSDIKSVQGIQY-LPNVTKLFLNGNKLTD-I---K-P-LANLKNLGWLFLDENKVKDLSS-LKDLKKLKSL 117 (291)
T ss_dssp HTCCEEECTTSCCCCCTTGGG-CTTCCEEECCSSCCCC-C---G-G-GTTCTTCCEEECCSSCCCCGGG-GTTCTTCCEE
T ss_pred CcccEEEccCCCcccChhHhc-CCCCCEEEccCCccCC-C---c-c-cccCCCCCEEECCCCcCCCChh-hccCCCCCEE
Confidence 35677777766554333 444 7778888887776521 1 1 2 7777888888888887776553 7777888888
Q ss_pred EecCCCCcccChhhcCCCCCcEEEccCCCCcccchhhhcccccceeeccCccCCCCCcCCcCccccccccccccccccCc
Q 003890 577 KLNIPSLKCLPSLLCTLLNLQTLEMPSSYVDQSPEDIWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFISTLNPSSCTP 656 (788)
Q Consensus 577 ~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~lp~~l~~L~~L~~L~l~~~~~~~~i~~~~~~l~~L~~L~~~~~~~~~~ 656 (788)
++++|.+..+| .+..+++|++|++++|.+..++ .+..+++|++|++++|.+.... . ++.+++|+.|++.++....+
T Consensus 118 ~L~~n~i~~~~-~l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~N~l~~~~-~-l~~l~~L~~L~L~~N~i~~l 193 (291)
T 1h6t_A 118 SLEHNGISDIN-GLVHLPQLESLYLGNNKITDIT-VLSRLTKLDTLSLEDNQISDIV-P-LAGLTKLQNLYLSKNHISDL 193 (291)
T ss_dssp ECTTSCCCCCG-GGGGCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCCCG-G-GTTCTTCCEEECCSSCCCBC
T ss_pred ECCCCcCCCCh-hhcCCCCCCEEEccCCcCCcch-hhccCCCCCEEEccCCccccch-h-hcCCCccCEEECCCCcCCCC
Confidence 88888777764 5777788888888888777764 4777788888888777654322 1 35556666666555444444
Q ss_pred cccCCCCCCCeEEEEccC
Q 003890 657 DILGRLPNVQTLRISGDL 674 (788)
Q Consensus 657 ~~l~~L~~L~~L~l~~~~ 674 (788)
..+..+++|+.|+++++.
T Consensus 194 ~~l~~l~~L~~L~l~~n~ 211 (291)
T 1h6t_A 194 RALAGLKNLDVLELFSQE 211 (291)
T ss_dssp GGGTTCTTCSEEEEEEEE
T ss_pred hhhccCCCCCEEECcCCc
Confidence 445555555555555553
No 93
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.52 E-value=7.9e-14 Score=142.85 Aligned_cols=175 Identities=18% Similarity=0.158 Sum_probs=124.3
Q ss_pred ccccEEEecCCCCCCCCccccCCCCccEEEecCCCCcccCh-hhcCCCCCcEEEccCCCCcccch-hhhcccccceeecc
Q 003890 548 KHLRILNLGSAVLVQFPPGLENLFHLKYLKLNIPSLKCLPS-LLCTLLNLQTLEMPSSYVDQSPE-DIWMMQKLMHLNFG 625 (788)
Q Consensus 548 ~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~l~~lp~-~l~~L~~L~~L~l~ 625 (788)
...+.++++++.++.+|..+. .+|++|++++|.+..++. .+.++++|++|++++|.+..++. .+.++++|++|+++
T Consensus 14 ~~~~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 91 (251)
T 3m19_A 14 EGKKEVDCQGKSLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA 91 (251)
T ss_dssp GGGTEEECTTCCCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred CCCeEEecCCCCccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence 567899999999999998776 689999999999997754 68999999999999998888865 58899999999999
Q ss_pred CccCCCCCcCCcCccccccccccccccccCcc--ccCCCCCCCeEEEEccCCcChhcHHHhccCCCCCCEEEeecCCCCC
Q 003890 626 SITLPAPPKNYSSSLKNLIFISTLNPSSCTPD--ILGRLPNVQTLRISGDLSCYHSGVSKSLCELHKLECLKLVNERKPS 703 (788)
Q Consensus 626 ~~~~~~~i~~~~~~l~~L~~L~~~~~~~~~~~--~l~~L~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~ 703 (788)
+|.+....+..|+.+++|++|++.++....+. .+..+++|+.|+++++. .....+..+..+++|+.|+|+++
T Consensus 92 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~--l~~~~~~~~~~l~~L~~L~L~~N---- 165 (251)
T 3m19_A 92 NNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQ--LQSIPAGAFDKLTNLQTLSLSTN---- 165 (251)
T ss_dssp TSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC--CCCCCTTTTTTCTTCCEEECCSS----
T ss_pred CCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCc--CCccCHHHcCcCcCCCEEECCCC----
Confidence 98776544444566777777766654333222 24556666666666654 22222234555566666666533
Q ss_pred cccccccCCCcccccccccccccccc-CcccCCCCCcceEEEecccccc
Q 003890 704 RMVLYEYQFPPTDMARILSQLIRQEF-VESEMSLPLLQLLDLEESDEED 751 (788)
Q Consensus 704 ~~~~~~~l~~~~~L~~L~~~l~~~~l-p~~l~~l~~L~~L~L~~~~l~~ 751 (788)
.+ ..+ |..+..+++|+.|+|++|++..
T Consensus 166 -------------------~l--~~~~~~~~~~l~~L~~L~l~~N~~~c 193 (251)
T 3m19_A 166 -------------------QL--QSVPHGAFDRLGKLQTITLFGNQFDC 193 (251)
T ss_dssp -------------------CC--SCCCTTTTTTCTTCCEEECCSCCBCT
T ss_pred -------------------cC--CccCHHHHhCCCCCCEEEeeCCceeC
Confidence 22 223 3356677888888888888765
No 94
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.52 E-value=7.8e-16 Score=172.80 Aligned_cols=275 Identities=14% Similarity=0.050 Sum_probs=192.7
Q ss_pred CCceeEEEeecCcccccc----ccccccccceEEecCCCCchhhhhhhhhhhcCCccccEEEecCCCCCC-CCccc-cCC
Q 003890 497 PANVKWCYIMKDLIEFFS----LEHSDIYLQSFLNHSSESDHLALIDCENFCEKFKHLRILNLGSAVLVQ-FPPGL-ENL 570 (788)
Q Consensus 497 ~~~~r~Ls~~~~~~~~~~----~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~-lp~~i-~~L 570 (788)
+.++++|.+.++...... ... +++|+.|.+.++.........++..+..+++|++|++++|.+.. .+..+ ..+
T Consensus 2 ~~~l~~L~Ls~~~l~~~~~~~~~~~-~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l 80 (461)
T 1z7x_W 2 SLDIQSLDIQCEELSDARWAELLPL-LQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGL 80 (461)
T ss_dssp CEEEEEEEEESCCCCHHHHHHHHHH-HTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTT
T ss_pred CccceehhhhhcccCchhHHHHHhh-cCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHH
Confidence 456788888876654222 445 89999999999987544344456888999999999999999873 23333 234
Q ss_pred C----CccEEEecCCCCc-----ccChhhcCCCCCcEEEccCCCCccc-chhhh-----cccccceeeccCccCCCC---
Q 003890 571 F----HLKYLKLNIPSLK-----CLPSLLCTLLNLQTLEMPSSYVDQS-PEDIW-----MMQKLMHLNFGSITLPAP--- 632 (788)
Q Consensus 571 ~----~L~~L~L~~~~i~-----~lp~~i~~L~~L~~L~L~~~~l~~l-p~~l~-----~L~~L~~L~l~~~~~~~~--- 632 (788)
. +|++|++++|.+. .+|..+.++++|++|++++|.+... +..+. ..++|++|++++|.+...
T Consensus 81 ~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~ 160 (461)
T 1z7x_W 81 QTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCE 160 (461)
T ss_dssp CSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHH
T ss_pred hhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHH
Confidence 4 6999999999988 4688899999999999999977543 22232 256899999999876542
Q ss_pred -CcCCcCcccccccccccccccc--CccccC-----CCCCCCeEEEEccCCc--ChhcHHHhccCCCCCCEEEeecCCCC
Q 003890 633 -PKNYSSSLKNLIFISTLNPSSC--TPDILG-----RLPNVQTLRISGDLSC--YHSGVSKSLCELHKLECLKLVNERKP 702 (788)
Q Consensus 633 -i~~~~~~l~~L~~L~~~~~~~~--~~~~l~-----~L~~L~~L~l~~~~~~--~~~~~~~~l~~l~~L~~L~L~~~~~~ 702 (788)
++..+..+++|++|++.++... .+..+. .+++|+.|++++|.-. ....++..+..+++|+.|+|+++...
T Consensus 161 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~ 240 (461)
T 1z7x_W 161 PLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLG 240 (461)
T ss_dssp HHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCH
T ss_pred HHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCC
Confidence 2333466789999998865422 112222 3668999999999711 12246777888999999999976432
Q ss_pred Cccc--c-cccCCCccccccc---ccccccc---ccCcccCCCCCcceEEEeccccccccccCCcccccc-----cccCC
Q 003890 703 SRMV--L-YEYQFPPTDMARI---LSQLIRQ---EFVESEMSLPLLQLLDLEESDEEDDERSDILEILQD-----INDFV 768 (788)
Q Consensus 703 ~~~~--~-~~~l~~~~~L~~L---~~~l~~~---~lp~~l~~l~~L~~L~L~~~~l~~~~~~~~l~~l~~-----L~~L~ 768 (788)
.... . ......+++|++| .+.+.+. .+|..+..+++|++|+|++|.+.+. ....+.. .++|+
T Consensus 241 ~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~----~~~~l~~~l~~~~~~L~ 316 (461)
T 1z7x_W 241 DVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDE----GARLLCETLLEPGCQLE 316 (461)
T ss_dssp HHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHH----HHHHHHHHHTSTTCCCC
T ss_pred hHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchH----HHHHHHHHhccCCccce
Confidence 1000 0 1122357899999 5556211 1677777899999999999998765 3444443 37999
Q ss_pred eeEecccC
Q 003890 769 HESEEAID 776 (788)
Q Consensus 769 ~L~L~~~~ 776 (788)
+|++++|.
T Consensus 317 ~L~L~~n~ 324 (461)
T 1z7x_W 317 SLWVKSCS 324 (461)
T ss_dssp EEECTTSC
T ss_pred eeEcCCCC
Confidence 99999996
No 95
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.51 E-value=2.6e-15 Score=161.03 Aligned_cols=222 Identities=14% Similarity=0.127 Sum_probs=158.4
Q ss_pred ccceEEecCCCCchhhhhhhhhhhcCC--ccccEEEecCCCCCCCCccccCCCCccEEEecCCCCcc--cChhhcCCCCC
Q 003890 521 YLQSFLNHSSESDHLALIDCENFCEKF--KHLRILNLGSAVLVQFPPGLENLFHLKYLKLNIPSLKC--LPSLLCTLLNL 596 (788)
Q Consensus 521 ~Lr~L~l~~~~~~~~~~~~~~~~~~~l--~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~--lp~~i~~L~~L 596 (788)
.++.+.+.++... +..+..+ ++++.|++++|.+...+..+..+.+|++|++++|.+.. +|..+..+++|
T Consensus 48 ~~~~l~l~~~~~~-------~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L 120 (336)
T 2ast_B 48 LWQTLDLTGKNLH-------PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKL 120 (336)
T ss_dssp TSSEEECTTCBCC-------HHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCC
T ss_pred hheeeccccccCC-------HHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCC
Confidence 4677777766542 2445555 78888888888888666667788888888888888763 67778888888
Q ss_pred cEEEccCCCCc-ccchhhhcccccceeeccCcc-CCCCCcCCcCccccccccccccccccCccccCCCCCCCeEEEEccC
Q 003890 597 QTLEMPSSYVD-QSPEDIWMMQKLMHLNFGSIT-LPAPPKNYSSSLKNLIFISTLNPSSCTPDILGRLPNVQTLRISGDL 674 (788)
Q Consensus 597 ~~L~L~~~~l~-~lp~~l~~L~~L~~L~l~~~~-~~~~i~~~~~~l~~L~~L~~~~~~~~~~~~l~~L~~L~~L~l~~~~ 674 (788)
++|++++|.+. ..|..++++++|++|++++|. +... .....+..+++|+.|++++|.
T Consensus 121 ~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~---------------------~l~~~~~~~~~L~~L~l~~~~ 179 (336)
T 2ast_B 121 QNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEF---------------------ALQTLLSSCSRLDELNLSWCF 179 (336)
T ss_dssp SEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHH---------------------HHHHHHHHCTTCCEEECCCCT
T ss_pred CEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHH---------------------HHHHHHhcCCCCCEEcCCCCC
Confidence 88888888665 456678888888888887762 3210 011224567889999999883
Q ss_pred CcChhcHHHhccCCC-CCCEEEeecCC-CCCcccccccCCCccccccc---ccc-ccccccCcccCCCCCcceEEEeccc
Q 003890 675 SCYHSGVSKSLCELH-KLECLKLVNER-KPSRMVLYEYQFPPTDMARI---LSQ-LIRQEFVESEMSLPLLQLLDLEESD 748 (788)
Q Consensus 675 ~~~~~~~~~~l~~l~-~L~~L~L~~~~-~~~~~~~~~~l~~~~~L~~L---~~~-l~~~~lp~~l~~l~~L~~L~L~~~~ 748 (788)
......++..+..++ +|++|+|+++. ...+......+..+++|++| .+. + +...+..+..+++|++|+|++|.
T Consensus 180 ~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l-~~~~~~~l~~l~~L~~L~l~~~~ 258 (336)
T 2ast_B 180 DFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVML-KNDCFQEFFQLNYLQHLSLSRCY 258 (336)
T ss_dssp TCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTC-CGGGGGGGGGCTTCCEEECTTCT
T ss_pred CcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcC-CHHHHHHHhCCCCCCEeeCCCCC
Confidence 122233677788899 99999999764 22211234445568899999 444 4 33455578899999999999995
Q ss_pred -cccccccCCcccccccccCCeeEeccc
Q 003890 749 -EEDDERSDILEILQDINDFVHESEEAI 775 (788)
Q Consensus 749 -l~~~~~~~~l~~l~~L~~L~~L~L~~~ 775 (788)
+... .+..++++|+|++|++++|
T Consensus 259 ~~~~~----~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 259 DIIPE----TLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp TCCGG----GGGGGGGCTTCCEEECTTS
T ss_pred CCCHH----HHHHHhcCCCCCEEeccCc
Confidence 4433 4557889999999999999
No 96
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.49 E-value=7.4e-14 Score=137.40 Aligned_cols=152 Identities=15% Similarity=0.147 Sum_probs=91.0
Q ss_pred cCCCCccEEEecCCCCcccChhhcCCCCCcEEEccCCCCcccchhhhcccccceeeccCccCCCCCcCCcCccccccccc
Q 003890 568 ENLFHLKYLKLNIPSLKCLPSLLCTLLNLQTLEMPSSYVDQSPEDIWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFIS 647 (788)
Q Consensus 568 ~~L~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~lp~~l~~L~~L~~L~l~~~~~~~~i~~~~~~l~~L~~L~ 647 (788)
..+.+|++|++++|.+..+| .+..+++|++|++++|.+..++ .+..+++|++|++++|.+....
T Consensus 41 ~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~-------------- 104 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTDLT-GIEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTSDK-------------- 104 (197)
T ss_dssp HHHHTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBGGG--------------
T ss_pred hhcCCccEEeccCCCccChH-HHhcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCccc--------------
Confidence 44556666666666666665 5666666666666666555444 3666666666666655443211
Q ss_pred cccccccCccccCCCCCCCeEEEEccCCcChhcHHHhccCCCCCCEEEeecCCCCCcccccccCCCcccccccccccccc
Q 003890 648 TLNPSSCTPDILGRLPNVQTLRISGDLSCYHSGVSKSLCELHKLECLKLVNERKPSRMVLYEYQFPPTDMARILSQLIRQ 727 (788)
Q Consensus 648 ~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~l~~~~~L~~L~~~l~~~ 727 (788)
+..++.+++|+.|++++|. .....+..+..+++|+.|+|+++... .
T Consensus 105 --------~~~l~~l~~L~~L~Ls~n~--i~~~~~~~l~~l~~L~~L~L~~n~~i------------------------~ 150 (197)
T 4ezg_A 105 --------IPNLSGLTSLTLLDISHSA--HDDSILTKINTLPKVNSIDLSYNGAI------------------------T 150 (197)
T ss_dssp --------SCCCTTCTTCCEEECCSSB--CBGGGHHHHTTCSSCCEEECCSCTBC------------------------C
T ss_pred --------ChhhcCCCCCCEEEecCCc--cCcHhHHHHhhCCCCCEEEccCCCCc------------------------c
Confidence 1224445566666666665 33345566777777777777754312 2
Q ss_pred ccCcccCCCCCcceEEEeccccccccccCCcccccccccCCeeEecccC
Q 003890 728 EFVESEMSLPLLQLLDLEESDEEDDERSDILEILQDINDFVHESEEAID 776 (788)
Q Consensus 728 ~lp~~l~~l~~L~~L~L~~~~l~~~~~~~~l~~l~~L~~L~~L~L~~~~ 776 (788)
.+| .+..+++|++|++++|.+.+ ++.+..+++|++|++++++
T Consensus 151 ~~~-~l~~l~~L~~L~l~~n~i~~------~~~l~~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 151 DIM-PLKTLPELKSLNIQFDGVHD------YRGIEDFPKLNQLYAFSQT 192 (197)
T ss_dssp CCG-GGGGCSSCCEEECTTBCCCC------CTTGGGCSSCCEEEECBC-
T ss_pred ccH-hhcCCCCCCEEECCCCCCcC------hHHhccCCCCCEEEeeCcc
Confidence 334 45666777777777777763 3466777777777777764
No 97
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.49 E-value=2.6e-14 Score=140.67 Aligned_cols=147 Identities=12% Similarity=0.036 Sum_probs=86.9
Q ss_pred ccccceEEecCCCCchhhhhhhhhhhcCCccccEEEecCCCCCCCCccccCCCCccEEEecCCCCcc-cChhhcCCCCCc
Q 003890 519 DIYLQSFLNHSSESDHLALIDCENFCEKFKHLRILNLGSAVLVQFPPGLENLFHLKYLKLNIPSLKC-LPSLLCTLLNLQ 597 (788)
Q Consensus 519 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~-lp~~i~~L~~L~ 597 (788)
+++|+.|.+.++... .+ +.+..+++|++|++++|.+..++ .+..+++|++|++++|.+.. .|..++.+++|+
T Consensus 43 l~~L~~L~l~~n~i~-~l-----~~l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~ 115 (197)
T 4ezg_A 43 MNSLTYITLANINVT-DL-----TGIEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLT 115 (197)
T ss_dssp HHTCCEEEEESSCCS-CC-----TTGGGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCC
T ss_pred cCCccEEeccCCCcc-Ch-----HHHhcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCC
Confidence 667777777766542 11 14666777777777777665443 56677777777777777764 566677777777
Q ss_pred EEEccCCCCcc-cchhhhcccccceeeccCccCCCCCcCCcCccccccccccccccccCccccCCCCCCCeEEEEcc
Q 003890 598 TLEMPSSYVDQ-SPEDIWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFISTLNPSSCTPDILGRLPNVQTLRISGD 673 (788)
Q Consensus 598 ~L~L~~~~l~~-lp~~l~~L~~L~~L~l~~~~~~~~i~~~~~~l~~L~~L~~~~~~~~~~~~l~~L~~L~~L~l~~~ 673 (788)
+|++++|.+.. .|..++++++|++|++++|.....++ .++.+++|+.|++.++....+..+..+++|+.|+++++
T Consensus 116 ~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~~~~l~~l~~L~~L~l~~N 191 (197)
T 4ezg_A 116 LLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDYRGIEDFPKLNQLYAFSQ 191 (197)
T ss_dssp EEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCCCTTGGGCSSCCEEEECBC
T ss_pred EEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcChHHhccCCCCCEEEeeCc
Confidence 77777776654 45567777777777777665222232 23444445554444433333333444444444444444
No 98
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.49 E-value=1.8e-13 Score=159.89 Aligned_cols=258 Identities=17% Similarity=0.153 Sum_probs=146.1
Q ss_pred ceeEEEeecCcccccc-ccccccccceEEecCCCCchhhhhhhhhhhcCCccccEEEecCCCCCCCCccccCCCCccEEE
Q 003890 499 NVKWCYIMKDLIEFFS-LEHSDIYLQSFLNHSSESDHLALIDCENFCEKFKHLRILNLGSAVLVQFPPGLENLFHLKYLK 577 (788)
Q Consensus 499 ~~r~Ls~~~~~~~~~~-~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~ 577 (788)
++..+.+..+...... ... ...++.|.+.++.... -....+..|+.+++.+|.+...+ ....+++|++|+
T Consensus 307 ~l~~l~~~~~~~~~~~~~~~-~~~L~~L~l~~~~~~~-------~~~~~l~~L~~l~l~~n~~~~~~-~~~~l~~L~~L~ 377 (635)
T 4g8a_A 307 NVSSFSLVSVTIERVKDFSY-NFGWQHLELVNCKFGQ-------FPTLKLKSLKRLTFTSNKGGNAF-SEVDLPSLEFLD 377 (635)
T ss_dssp TCSEEEEESCEEEECGGGGS-CCCCSEEEEESCEESS-------CCCCBCTTCCEEEEESCCSCCBC-CCCBCTTCCEEE
T ss_pred cccccccccccccccccccc-chhhhhhhcccccccC-------cCcccchhhhhcccccccCCCCc-ccccccccccch
Confidence 4455555544333222 333 5566666666654310 11134556666666666654432 334566677777
Q ss_pred ecCCCCc---ccChhhcCCCCCcEEEccCCCCcccchhhhcccccceeeccCccCCCCC-cCCcCcccccccccccccc-
Q 003890 578 LNIPSLK---CLPSLLCTLLNLQTLEMPSSYVDQSPEDIWMMQKLMHLNFGSITLPAPP-KNYSSSLKNLIFISTLNPS- 652 (788)
Q Consensus 578 L~~~~i~---~lp~~i~~L~~L~~L~L~~~~l~~lp~~l~~L~~L~~L~l~~~~~~~~i-~~~~~~l~~L~~L~~~~~~- 652 (788)
++.|.+. ..|..+..+.+|+.|++..+....++..+..+++|+.+++..+...... +..|..+.+++.+++..+.
T Consensus 378 ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l 457 (635)
T 4g8a_A 378 LSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHT 457 (635)
T ss_dssp CCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCC
T ss_pred hhccccccccccccchhhhhhhhhhhccccccccccccccccccccchhhhhcccccccccccccccccccccccccccc
Confidence 7666654 2344555666677777766655555555666667777766654322111 1223556666666555332
Q ss_pred -ccCccccCCCCCCCeEEEEccCCcCh-hcHHHhccCCCCCCEEEeecCCCCCcccccccCCCccccccc---ccccccc
Q 003890 653 -SCTPDILGRLPNVQTLRISGDLSCYH-SGVSKSLCELHKLECLKLVNERKPSRMVLYEYQFPPTDMARI---LSQLIRQ 727 (788)
Q Consensus 653 -~~~~~~l~~L~~L~~L~l~~~~~~~~-~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~l~~~~~L~~L---~~~l~~~ 727 (788)
......+..+++|+.|+++++. .. ...+..+..+++|+.|+|+++.... .....+..+++|++| .|.+ .
T Consensus 458 ~~~~~~~~~~~~~L~~L~Ls~N~--~~~~~~~~~~~~l~~L~~L~Ls~N~L~~--l~~~~f~~l~~L~~L~Ls~N~l--~ 531 (635)
T 4g8a_A 458 RVAFNGIFNGLSSLEVLKMAGNS--FQENFLPDIFTELRNLTFLDLSQCQLEQ--LSPTAFNSLSSLQVLNMSHNNF--F 531 (635)
T ss_dssp EECCTTTTTTCTTCCEEECTTCE--EGGGEECSCCTTCTTCCEEECTTSCCCE--ECTTTTTTCTTCCEEECTTSCC--C
T ss_pred ccccccccccchhhhhhhhhhcc--cccccCchhhhhccccCEEECCCCccCC--cChHHHcCCCCCCEEECCCCcC--C
Confidence 2223345666667777776654 12 2234456666777777777554331 234556666677776 4555 4
Q ss_pred cc-CcccCCCCCcceEEEeccccccccccCCccccccc-ccCCeeEeccc
Q 003890 728 EF-VESEMSLPLLQLLDLEESDEEDDERSDILEILQDI-NDFVHESEEAI 775 (788)
Q Consensus 728 ~l-p~~l~~l~~L~~L~L~~~~l~~~~~~~~l~~l~~L-~~L~~L~L~~~ 775 (788)
.+ |..+..+++|+.|+|++|++... ....+..+ ++|++|+|+++
T Consensus 532 ~l~~~~~~~l~~L~~L~Ls~N~l~~~----~~~~l~~l~~~L~~L~L~~N 577 (635)
T 4g8a_A 532 SLDTFPYKCLNSLQVLDYSLNHIMTS----KKQELQHFPSSLAFLNLTQN 577 (635)
T ss_dssp BCCCGGGTTCTTCCEEECTTSCCCBC----CSSCTTCCCTTCCEEECTTC
T ss_pred CCChhHHhCCCCCCEEECCCCcCCCC----CHHHHHhhhCcCCEEEeeCC
Confidence 44 44567788888888888888765 44556676 47888888764
No 99
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.48 E-value=3.3e-14 Score=146.64 Aligned_cols=124 Identities=21% Similarity=0.227 Sum_probs=62.2
Q ss_pred hcCCccccEEEecCCCCCCCCccccCCCCccEEEecCCCCcccChhhcCCCCCcEEEccCCCCcccchhhhcccccceee
Q 003890 544 CEKFKHLRILNLGSAVLVQFPPGLENLFHLKYLKLNIPSLKCLPSLLCTLLNLQTLEMPSSYVDQSPEDIWMMQKLMHLN 623 (788)
Q Consensus 544 ~~~l~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~lp~~l~~L~~L~~L~ 623 (788)
+..+++|++|++++|.++.+| .++.+.+|++|++++|.+..+|. +.++++|++|++++|.+..+|. +.. ++|++|+
T Consensus 37 ~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~~N~l~~l~~-~~~-~~L~~L~ 112 (263)
T 1xeu_A 37 QKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVNRNRLKNLNG-IPS-ACLSRLF 112 (263)
T ss_dssp HHHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCSSCCSCCTT-CCC-SSCCEEE
T ss_pred hhhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCccCCChh-hccCCCCCEEECCCCccCCcCc-ccc-CcccEEE
Confidence 445555666666666655555 45556666666666666665554 5566666666666665555554 222 5555555
Q ss_pred ccCccCCCCCcCCcCccccccccccccccccCccccCCCCCCCeEEEEcc
Q 003890 624 FGSITLPAPPKNYSSSLKNLIFISTLNPSSCTPDILGRLPNVQTLRISGD 673 (788)
Q Consensus 624 l~~~~~~~~i~~~~~~l~~L~~L~~~~~~~~~~~~l~~L~~L~~L~l~~~ 673 (788)
+++|.+.. ++ .++.+++|+.|++.++....+..+..+++|+.|++++|
T Consensus 113 L~~N~l~~-~~-~l~~l~~L~~L~Ls~N~i~~~~~l~~l~~L~~L~L~~N 160 (263)
T 1xeu_A 113 LDNNELRD-TD-SLIHLKNLEILSIRNNKLKSIVMLGFLSKLEVLDLHGN 160 (263)
T ss_dssp CCSSCCSB-SG-GGTTCTTCCEEECTTSCCCBCGGGGGCTTCCEEECTTS
T ss_pred ccCCccCC-Ch-hhcCcccccEEECCCCcCCCChHHccCCCCCEEECCCC
Confidence 55554332 11 12444444444444333322333344444444444443
No 100
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.46 E-value=4e-13 Score=133.36 Aligned_cols=163 Identities=18% Similarity=0.252 Sum_probs=91.5
Q ss_pred cccEEEecCCCCCCCCcc-ccCCCCccEEEecCCCCcccChh-hcCCCCCcEEEccCCCCcccchh-hhcccccceeecc
Q 003890 549 HLRILNLGSAVLVQFPPG-LENLFHLKYLKLNIPSLKCLPSL-LCTLLNLQTLEMPSSYVDQSPED-IWMMQKLMHLNFG 625 (788)
Q Consensus 549 ~L~~L~L~~~~l~~lp~~-i~~L~~L~~L~L~~~~i~~lp~~-i~~L~~L~~L~L~~~~l~~lp~~-l~~L~~L~~L~l~ 625 (788)
+|++|++++|.++.+|.. +..+.+|++|++++|.+..+|.. +.++.+|++|++++|.+..+|.. +.++++|++|+++
T Consensus 29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 108 (208)
T 2o6s_A 29 QTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALN 108 (208)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcC
Confidence 455555555555544432 44555555555555555555433 35555555555555555555442 4555555555555
Q ss_pred CccCCCCCcCCcCccccccccccccccccCccccCCCCCCCeEEEEccCCcChhcHHHhccCCCCCCEEEeecCCCCCcc
Q 003890 626 SITLPAPPKNYSSSLKNLIFISTLNPSSCTPDILGRLPNVQTLRISGDLSCYHSGVSKSLCELHKLECLKLVNERKPSRM 705 (788)
Q Consensus 626 ~~~~~~~i~~~~~~l~~L~~L~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~ 705 (788)
+|.+.... ...+..+++|+.|+++++. .....+..+..+++|+.|+|+++...
T Consensus 109 ~N~l~~~~----------------------~~~~~~l~~L~~L~l~~N~--l~~~~~~~~~~l~~L~~L~l~~N~~~--- 161 (208)
T 2o6s_A 109 TNQLQSLP----------------------DGVFDKLTQLKDLRLYQNQ--LKSVPDGVFDRLTSLQYIWLHDNPWD--- 161 (208)
T ss_dssp SSCCCCCC----------------------TTTTTTCTTCCEEECCSSC--CSCCCTTTTTTCTTCCEEECCSCCBC---
T ss_pred CCcCcccC----------------------HhHhccCCcCCEEECCCCc--cceeCHHHhccCCCccEEEecCCCee---
Confidence 54433211 1125667777777777775 22223344677888888888864322
Q ss_pred cccccCCCccccccc---cccccccccCcccCCCCCcceEEEecccc
Q 003890 706 VLYEYQFPPTDMARI---LSQLIRQEFVESEMSLPLLQLLDLEESDE 749 (788)
Q Consensus 706 ~~~~~l~~~~~L~~L---~~~l~~~~lp~~l~~l~~L~~L~L~~~~l 749 (788)
..+++|+.| .+.+ ...+|.+++.++. ++..|..
T Consensus 162 ------~~~~~l~~L~~~~n~~-~g~ip~~~~~l~~----~~~~C~~ 197 (208)
T 2o6s_A 162 ------CTCPGIRYLSEWINKH-SGVVRNSAGSVAP----DSAKCSG 197 (208)
T ss_dssp ------CCTTTTHHHHHHHHHC-TTTBBCTTSSBCT----TCSBBTT
T ss_pred ------cCCCCHHHHHHHHHhC-CceeeccCccccC----Ccccccc
Confidence 345677777 4555 3567878877654 3445543
No 101
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.46 E-value=1.2e-14 Score=157.58 Aligned_cols=182 Identities=13% Similarity=0.088 Sum_probs=97.4
Q ss_pred ccccceEEecCCCCchhhhhhhhhhhcCCc-cccEEEecCCCCCCC-CccccCC-----CCccEEEecCCCCcccCh-h-
Q 003890 519 DIYLQSFLNHSSESDHLALIDCENFCEKFK-HLRILNLGSAVLVQF-PPGLENL-----FHLKYLKLNIPSLKCLPS-L- 589 (788)
Q Consensus 519 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~-~L~~L~L~~~~l~~l-p~~i~~L-----~~L~~L~L~~~~i~~lp~-~- 589 (788)
.++|+.|.+.++.........+...|..++ +|+.|+|++|.++.. +..+..+ .+|++|++++|.+...+. .
T Consensus 21 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l 100 (362)
T 3goz_A 21 PHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDEL 100 (362)
T ss_dssp CTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHH
T ss_pred CCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHH
Confidence 344777777777653221112225566666 777777777777633 3444443 777777777777764432 2
Q ss_pred ---hcCC-CCCcEEEccCCCCcccch-hhh----c-ccccceeeccCccCCCC----CcCCcCccc-ccccccccccccc
Q 003890 590 ---LCTL-LNLQTLEMPSSYVDQSPE-DIW----M-MQKLMHLNFGSITLPAP----PKNYSSSLK-NLIFISTLNPSSC 654 (788)
Q Consensus 590 ---i~~L-~~L~~L~L~~~~l~~lp~-~l~----~-L~~L~~L~l~~~~~~~~----i~~~~~~l~-~L~~L~~~~~~~~ 654 (788)
+..+ ++|++|++++|.+...+. .+. . .++|++|++++|.+... ++..+..+. +|++|++.++...
T Consensus 101 ~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~ 180 (362)
T 3goz_A 101 VKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLA 180 (362)
T ss_dssp HHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGG
T ss_pred HHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCc
Confidence 3344 677777777776665543 222 2 24777777777655421 111112333 6666666543321
Q ss_pred C--cc----ccCCC-CCCCeEEEEccC--CcChhcHHHhccCC-CCCCEEEeecCC
Q 003890 655 T--PD----ILGRL-PNVQTLRISGDL--SCYHSGVSKSLCEL-HKLECLKLVNER 700 (788)
Q Consensus 655 ~--~~----~l~~L-~~L~~L~l~~~~--~~~~~~~~~~l~~l-~~L~~L~L~~~~ 700 (788)
. .. .+..+ ++|+.|++++|. ......++..+... ++|+.|+|+++.
T Consensus 181 ~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~ 236 (362)
T 3goz_A 181 SKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNC 236 (362)
T ss_dssp GSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSC
T ss_pred hhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCC
Confidence 1 11 23334 366666666665 11112244444442 366666666543
No 102
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.45 E-value=2.9e-13 Score=143.29 Aligned_cols=192 Identities=14% Similarity=0.004 Sum_probs=88.6
Q ss_pred eeEEEeecCccc-ccc--c--cccccccceEEecCCCCchhhhhhhhhhhcCCccccEEEecCCCCCCCC-ccccCCCCc
Q 003890 500 VKWCYIMKDLIE-FFS--L--EHSDIYLQSFLNHSSESDHLALIDCENFCEKFKHLRILNLGSAVLVQFP-PGLENLFHL 573 (788)
Q Consensus 500 ~r~Ls~~~~~~~-~~~--~--~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp-~~i~~L~~L 573 (788)
+++|.+.++... ..+ . .. +++|++|.+.++.............+..+++|++|+|++|.+..+| ..++.+++|
T Consensus 93 L~~L~l~~n~l~~~~~~~~~~~~-~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L 171 (310)
T 4glp_A 93 LKELTLEDLKITGTMPPLPLEAT-GLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPAL 171 (310)
T ss_dssp CCEEEEESCCCBSCCCCCSSSCC-CBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTC
T ss_pred eeEEEeeCCEeccchhhhhhhcc-CCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCC
Confidence 555555554432 111 1 33 5566666666555432111111123335556666666666655333 445556666
Q ss_pred cEEEecCCCCcc---cCh--hhcCCCCCcEEEccCCCCcccchh----hhcccccceeeccCccCCCCCcCCcCcc---c
Q 003890 574 KYLKLNIPSLKC---LPS--LLCTLLNLQTLEMPSSYVDQSPED----IWMMQKLMHLNFGSITLPAPPKNYSSSL---K 641 (788)
Q Consensus 574 ~~L~L~~~~i~~---lp~--~i~~L~~L~~L~L~~~~l~~lp~~----l~~L~~L~~L~l~~~~~~~~i~~~~~~l---~ 641 (788)
++|++++|.+.. +|. .++++++|++|++++|.++.+|.. +..+++|++|++++|.+...+|..++.+ +
T Consensus 172 ~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~ 251 (310)
T 4glp_A 172 TSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSS 251 (310)
T ss_dssp CEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCT
T ss_pred CEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcC
Confidence 666666665432 221 124555666666666655544431 3455666666666555443333333443 3
Q ss_pred cccccccccccccCc-cccCCCCCCCeEEEEccCCcChhcHHHhccCCCCCCEEEeec
Q 003890 642 NLIFISTLNPSSCTP-DILGRLPNVQTLRISGDLSCYHSGVSKSLCELHKLECLKLVN 698 (788)
Q Consensus 642 ~L~~L~~~~~~~~~~-~~l~~L~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~L~~ 698 (788)
+|++|++.++....+ ..+. ++|+.|++++|. ...++. +..+++|+.|+|++
T Consensus 252 ~L~~L~Ls~N~l~~lp~~~~--~~L~~L~Ls~N~---l~~~~~-~~~l~~L~~L~L~~ 303 (310)
T 4glp_A 252 ALNSLNLSFAGLEQVPKGLP--AKLRVLDLSSNR---LNRAPQ-PDELPEVDNLTLDG 303 (310)
T ss_dssp TCCCEECCSSCCCSCCSCCC--SCCSCEECCSCC---CCSCCC-TTSCCCCSCEECSS
T ss_pred cCCEEECCCCCCCchhhhhc--CCCCEEECCCCc---CCCCch-hhhCCCccEEECcC
Confidence 555555543322221 1121 455555555554 111111 34445555555553
No 103
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.45 E-value=2.5e-14 Score=165.92 Aligned_cols=274 Identities=11% Similarity=0.039 Sum_probs=148.9
Q ss_pred CceeEEEeecCcccccc---ccccccc-cceEEecCCCCchhhhhhhhhhhcCCccccEEEecCCCCCC-----CCcccc
Q 003890 498 ANVKWCYIMKDLIEFFS---LEHSDIY-LQSFLNHSSESDHLALIDCENFCEKFKHLRILNLGSAVLVQ-----FPPGLE 568 (788)
Q Consensus 498 ~~~r~Ls~~~~~~~~~~---~~~~~~~-Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~-----lp~~i~ 568 (788)
.+++.|.+..+...... ....+++ |+.|.+.++.... ...++.....+++|++|+|++|.+.. ++..+.
T Consensus 112 ~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~--~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~ 189 (592)
T 3ogk_B 112 RQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFT--TDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQ 189 (592)
T ss_dssp TTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEE--HHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHH
T ss_pred CCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcC--HHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHh
Confidence 34666666655332111 1110233 7777777665210 11122344567777777777776542 223345
Q ss_pred CCCCccEEEecCCCCc-----ccChhhcCCCCCcEEEccCCCCcccchhhhcccccceeeccCccC--------------
Q 003890 569 NLFHLKYLKLNIPSLK-----CLPSLLCTLLNLQTLEMPSSYVDQSPEDIWMMQKLMHLNFGSITL-------------- 629 (788)
Q Consensus 569 ~L~~L~~L~L~~~~i~-----~lp~~i~~L~~L~~L~L~~~~l~~lp~~l~~L~~L~~L~l~~~~~-------------- 629 (788)
.+++|++|++++|.+. .++..+.++++|++|++++|.+..+|..+.++++|++|+++.+..
T Consensus 190 ~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~ 269 (592)
T 3ogk_B 190 HNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFP 269 (592)
T ss_dssp HCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCC
T ss_pred cCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhcc
Confidence 5677777777777664 344445667777777777776666776677777777777753211
Q ss_pred ------------CCCCcCCcCcccccccccccccccc--Cc-cccCCCCCCCeEEEEccCCcChhcHHHhccCCCCCCEE
Q 003890 630 ------------PAPPKNYSSSLKNLIFISTLNPSSC--TP-DILGRLPNVQTLRISGDLSCYHSGVSKSLCELHKLECL 694 (788)
Q Consensus 630 ------------~~~i~~~~~~l~~L~~L~~~~~~~~--~~-~~l~~L~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L 694 (788)
...+|..+..+++|++|++.++... .+ ..+..+++|+.|++.++- ....++.....+++|++|
T Consensus 270 ~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~--~~~~l~~~~~~~~~L~~L 347 (592)
T 3ogk_B 270 RKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVI--GDRGLEVLAQYCKQLKRL 347 (592)
T ss_dssp TTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGG--HHHHHHHHHHHCTTCCEE
T ss_pred ccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCcc--CHHHHHHHHHhCCCCCEE
Confidence 1223333455666666666544311 11 224667777777777442 233334444566778888
Q ss_pred Eeec----------CCCCCcccccccCCCccccccc---cccccccccCcccCC-CCCcceEEEec----cccccccccC
Q 003890 695 KLVN----------ERKPSRMVLYEYQFPPTDMARI---LSQLIRQEFVESEMS-LPLLQLLDLEE----SDEEDDERSD 756 (788)
Q Consensus 695 ~L~~----------~~~~~~~~~~~~l~~~~~L~~L---~~~l~~~~lp~~l~~-l~~L~~L~L~~----~~l~~~~~~~ 756 (788)
+|++ +....+.........+++|++| .+.+.+. .+..+.. +++|++|+|++ |.+.+. +.+
T Consensus 348 ~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~-~~~~l~~~~~~L~~L~l~~~~~~n~l~~~-p~~ 425 (592)
T 3ogk_B 348 RIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNE-SLESIGTYLKNLCDFRLVLLDREERITDL-PLD 425 (592)
T ss_dssp EEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHH-HHHHHHHHCCSCCEEEEEECSCCSCCSSC-CCH
T ss_pred EeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHH-HHHHHHhhCCCCcEEEEeecCCCccccCc-hHH
Confidence 8873 3332111111112346778888 4555222 2233443 78888888873 344431 000
Q ss_pred -Cc-ccccccccCCeeEecccCc
Q 003890 757 -IL-EILQDINDFVHESEEAIDT 777 (788)
Q Consensus 757 -~l-~~l~~L~~L~~L~L~~~~~ 777 (788)
.+ ..+.++++|++|+|+.|..
T Consensus 426 ~~~~~~~~~~~~L~~L~L~~~~~ 448 (592)
T 3ogk_B 426 NGVRSLLIGCKKLRRFAFYLRQG 448 (592)
T ss_dssp HHHHHHHHHCTTCCEEEEECCGG
T ss_pred HHHHHHHHhCCCCCEEEEecCCC
Confidence 01 1255688999999977654
No 104
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.44 E-value=3e-13 Score=145.85 Aligned_cols=214 Identities=10% Similarity=0.067 Sum_probs=156.8
Q ss_pred ccccEEEecCCCCCCCCc-cccCCCCccEEEecCCCCc-ccCh-hhcCCCCCcE-EEccCCCCcccch-hhhccccccee
Q 003890 548 KHLRILNLGSAVLVQFPP-GLENLFHLKYLKLNIPSLK-CLPS-LLCTLLNLQT-LEMPSSYVDQSPE-DIWMMQKLMHL 622 (788)
Q Consensus 548 ~~L~~L~L~~~~l~~lp~-~i~~L~~L~~L~L~~~~i~-~lp~-~i~~L~~L~~-L~L~~~~l~~lp~-~l~~L~~L~~L 622 (788)
++++.|+|++|.|+.+|. .|.++++|++|+|++|.+. .+|. .+.++.+|+. +.+.+|.+..+|. .+..+++|++|
T Consensus 30 ~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L 109 (350)
T 4ay9_X 30 RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYL 109 (350)
T ss_dssp TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEE
T ss_pred CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccccc
Confidence 579999999999999986 5899999999999999975 5664 5688988876 5556678988865 68999999999
Q ss_pred eccCccCCCCCcCCcCccccccccccccc-cccC--ccccCCCC-CCCeEEEEccCCcChhcHHHhccCCCCCCEEEeec
Q 003890 623 NFGSITLPAPPKNYSSSLKNLIFISTLNP-SSCT--PDILGRLP-NVQTLRISGDLSCYHSGVSKSLCELHKLECLKLVN 698 (788)
Q Consensus 623 ~l~~~~~~~~i~~~~~~l~~L~~L~~~~~-~~~~--~~~l~~L~-~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~L~~ 698 (788)
++++|.+....+..+....++..|++.+. .... ...+..+. .++.|+++++. ...++.......+|+.|.+.+
T Consensus 110 ~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~---i~~i~~~~f~~~~L~~l~l~~ 186 (350)
T 4ay9_X 110 LISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNG---IQEIHNSAFNGTQLDELNLSD 186 (350)
T ss_dssp EEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSC---CCEECTTSSTTEEEEEEECTT
T ss_pred cccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccc---ccCCChhhccccchhHHhhcc
Confidence 99988765332222345556666666532 2221 22345554 57789999886 445555555667899999985
Q ss_pred CCCCCcccccccCCCccccccc---cccccccccCcccCCCCCcceEEEeccccccccccCCcccccccccCCeeEecc
Q 003890 699 ERKPSRMVLYEYQFPPTDMARI---LSQLIRQEFVESEMSLPLLQLLDLEESDEEDDERSDILEILQDINDFVHESEEA 774 (788)
Q Consensus 699 ~~~~~~~~~~~~l~~~~~L~~L---~~~l~~~~lp~~l~~l~~L~~L~L~~~~l~~~~~~~~l~~l~~L~~L~~L~L~~ 774 (788)
++.... ...+.+..+++|+.| .|.+ ..+|. ..+.+|+.|.+.+|.... .+|.+.+|++|+.+++.+
T Consensus 187 ~n~l~~-i~~~~f~~l~~L~~LdLs~N~l--~~lp~--~~~~~L~~L~~l~~~~l~-----~lP~l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 187 NNNLEE-LPNDVFHGASGPVILDISRTRI--HSLPS--YGLENLKKLRARSTYNLK-----KLPTLEKLVALMEASLTY 255 (350)
T ss_dssp CTTCCC-CCTTTTTTEECCSEEECTTSCC--CCCCS--SSCTTCCEEECTTCTTCC-----CCCCTTTCCSCCEEECSC
T ss_pred CCcccC-CCHHHhccCcccchhhcCCCCc--CccCh--hhhccchHhhhccCCCcC-----cCCCchhCcChhhCcCCC
Confidence 443311 234567889999999 6778 78885 347788888888776555 578899999999999975
No 105
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.44 E-value=1.5e-14 Score=167.77 Aligned_cols=59 Identities=8% Similarity=0.066 Sum_probs=42.4
Q ss_pred ccccccc---cccccccccCcccCCCCCcceEEEeccccccccccCCccc-ccccccCCeeEecccC
Q 003890 714 PTDMARI---LSQLIRQEFVESEMSLPLLQLLDLEESDEEDDERSDILEI-LQDINDFVHESEEAID 776 (788)
Q Consensus 714 ~~~L~~L---~~~l~~~~lp~~l~~l~~L~~L~L~~~~l~~~~~~~~l~~-l~~L~~L~~L~L~~~~ 776 (788)
+++|++| .+.+.+..+|.++..+++|++|+|++|.+.+. .++. ...+|+|++|+|++|.
T Consensus 462 ~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~----~~~~~~~~l~~L~~L~ls~n~ 524 (592)
T 3ogk_B 462 SPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSER----AIAAAVTKLPSLRYLWVQGYR 524 (592)
T ss_dssp CTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHH----HHHHHHHHCSSCCEEEEESCB
T ss_pred CccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHH----HHHHHHHhcCccCeeECcCCc
Confidence 5677777 44553334566667788899999999987654 3444 3578899999999886
No 106
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.43 E-value=2e-13 Score=140.73 Aligned_cols=147 Identities=19% Similarity=0.198 Sum_probs=117.1
Q ss_pred ccccccccceEEecCCCCchhhhhhhhhhhcCCccccEEEecCCCCCCCCccccCCCCccEEEecCCCCcccChhhcCCC
Q 003890 515 LEHSDIYLQSFLNHSSESDHLALIDCENFCEKFKHLRILNLGSAVLVQFPPGLENLFHLKYLKLNIPSLKCLPSLLCTLL 594 (788)
Q Consensus 515 ~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~lp~~i~~L~ 594 (788)
... +++|+.|.+.++... .+ +.+..+++|+.|++++|.++.+|. +..+++|++|++++|.+..+|.... .
T Consensus 37 ~~~-l~~L~~L~l~~n~i~-~l-----~~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~~N~l~~l~~~~~--~ 106 (263)
T 1xeu_A 37 QKE-LSGVQNFNGDNSNIQ-SL-----AGMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVNRNRLKNLNGIPS--A 106 (263)
T ss_dssp HHH-HTTCSEEECTTSCCC-CC-----TTGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCSSCCSCCTTCCC--S
T ss_pred hhh-cCcCcEEECcCCCcc-cc-----hHHhhCCCCCEEECCCCccCCChh-hccCCCCCEEECCCCccCCcCcccc--C
Confidence 344 788999999888652 22 257788999999999999988877 8889999999999999888875433 8
Q ss_pred CCcEEEccCCCCcccchhhhcccccceeeccCccCCCCCcCCcCccccccccccccccccCccccCCCCCCCeEEEEccC
Q 003890 595 NLQTLEMPSSYVDQSPEDIWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFISTLNPSSCTPDILGRLPNVQTLRISGDL 674 (788)
Q Consensus 595 ~L~~L~L~~~~l~~lp~~l~~L~~L~~L~l~~~~~~~~i~~~~~~l~~L~~L~~~~~~~~~~~~l~~L~~L~~L~l~~~~ 674 (788)
+|++|++++|.+..+|. +.++++|++|++++|.+.. ++ .++.+++|+.|++.++.......+..+++|+.|+++++.
T Consensus 107 ~L~~L~L~~N~l~~~~~-l~~l~~L~~L~Ls~N~i~~-~~-~l~~l~~L~~L~L~~N~i~~~~~l~~l~~L~~L~l~~N~ 183 (263)
T 1xeu_A 107 CLSRLFLDNNELRDTDS-LIHLKNLEILSIRNNKLKS-IV-MLGFLSKLEVLDLHGNEITNTGGLTRLKKVNWIDLTGQK 183 (263)
T ss_dssp SCCEEECCSSCCSBSGG-GTTCTTCCEEECTTSCCCB-CG-GGGGCTTCCEEECTTSCCCBCTTSTTCCCCCEEEEEEEE
T ss_pred cccEEEccCCccCCChh-hcCcccccEEECCCCcCCC-Ch-HHccCCCCCEEECCCCcCcchHHhccCCCCCEEeCCCCc
Confidence 89999999998888764 8889999999999887653 22 358888899988887665555778888888888888875
No 107
>3qfl_A MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-binding domain, L rich repeat containing receptors, protein binding; 2.00A {Hordeum vulgare}
Probab=99.43 E-value=3e-13 Score=118.94 Aligned_cols=78 Identities=15% Similarity=0.194 Sum_probs=67.8
Q ss_pred hHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchhc---cCCcccccCChHHHHHHHHHHHH
Q 003890 33 TPLFQNLLTESEIIATTLLRNYEADVARLLFQLIRQKFDEFEVALPFLQLLDLE---ESDEDVKRGDILEILEDINHFVH 109 (788)
Q Consensus 33 ~~ll~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~~~L~~i~~~l~~a~~~---~~~~~~~~~~~~~Wl~~l~~~~y 109 (788)
++++++| ++.+..+|. +..++++++++|+++|++|+++|.+|+.+ .+++.++ .|+++||+++|
T Consensus 4 ~~ll~KL-------~~ll~~E~~--l~~gv~~~i~~Lk~eL~~m~a~L~da~~~~~~~~d~~vk-----~W~~~vrdlaY 69 (115)
T 3qfl_A 4 SNLIPKL-------GELLTEEFK--LHKGVKKNIEDLGKELESMNAALIKIGEVPREQLDSQDK-----LWADEVRELSY 69 (115)
T ss_dssp CSHHHHH-------HHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHH-----HHHHHHHHHHH
T ss_pred HHHHHHH-------HHHHHHHHH--HHhchHHHHHHHHHHHHHHHHHHHHHHHhccccCCHHHH-----HHHHHHHHHHH
Confidence 5589988 333334444 89999999999999999999999999987 3789999 99999999999
Q ss_pred hHHHHHHHHHHhhhc
Q 003890 110 ESEEAIDAFFINIMQ 124 (788)
Q Consensus 110 ~~ed~lD~~~~~~~~ 124 (788)
|+||+||+|.++...
T Consensus 70 D~ED~iD~f~~~~~~ 84 (115)
T 3qfl_A 70 VIEDVVDKFLVQVDG 84 (115)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcc
Confidence 999999999998864
No 108
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.41 E-value=4.5e-13 Score=132.95 Aligned_cols=159 Identities=19% Similarity=0.205 Sum_probs=111.6
Q ss_pred ccccceEEecCCCCchhhhhhhhhhhcCCccccEEEecCCCCCCCCcc-ccCCCCccEEEecCCCCcccChh-hcCCCCC
Q 003890 519 DIYLQSFLNHSSESDHLALIDCENFCEKFKHLRILNLGSAVLVQFPPG-LENLFHLKYLKLNIPSLKCLPSL-LCTLLNL 596 (788)
Q Consensus 519 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~-i~~L~~L~~L~L~~~~i~~lp~~-i~~L~~L 596 (788)
.++|+.|.+.++... ..++..|..+++|++|++++|.++.+|.. +..+.+|++|++++|.+..+|.. +.++++|
T Consensus 27 ~~~l~~L~l~~n~l~----~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 102 (208)
T 2o6s_A 27 PAQTTYLDLETNSLK----SLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQL 102 (208)
T ss_dssp CTTCSEEECCSSCCC----CCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred CCCCcEEEcCCCccC----cCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCC
Confidence 567888888887753 23346678888999999999988877654 57888999999999888888655 5888899
Q ss_pred cEEEccCCCCcccchh-hhcccccceeeccCccCCCCCcCCcCccccccccccccccccCccccCCCCCCCeEEEEccCC
Q 003890 597 QTLEMPSSYVDQSPED-IWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFISTLNPSSCTPDILGRLPNVQTLRISGDLS 675 (788)
Q Consensus 597 ~~L~L~~~~l~~lp~~-l~~L~~L~~L~l~~~~~~~~i~~~~~~l~~L~~L~~~~~~~~~~~~l~~L~~L~~L~l~~~~~ 675 (788)
++|++++|.+..+|.. +.++++|++|++++|.+....+..|..+++|+.|++.++.. .+.+++|+.|.++.+.
T Consensus 103 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~-----~~~~~~l~~L~~~~n~- 176 (208)
T 2o6s_A 103 KELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPW-----DCTCPGIRYLSEWINK- 176 (208)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCB-----CCCTTTTHHHHHHHHH-
T ss_pred CEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCe-----ecCCCCHHHHHHHHHh-
Confidence 9999998888888764 68888999999888866543333346666677666654421 2344556666555554
Q ss_pred cChhcHHHhccCC
Q 003890 676 CYHSGVSKSLCEL 688 (788)
Q Consensus 676 ~~~~~~~~~l~~l 688 (788)
....+|..++.+
T Consensus 177 -~~g~ip~~~~~l 188 (208)
T 2o6s_A 177 -HSGVVRNSAGSV 188 (208)
T ss_dssp -CTTTBBCTTSSB
T ss_pred -CCceeeccCccc
Confidence 333444444433
No 109
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.41 E-value=6.1e-13 Score=143.40 Aligned_cols=235 Identities=10% Similarity=-0.000 Sum_probs=165.5
Q ss_pred EEeecCccccccccccccccceEEecCCCCchhhhhhhhhhhcCCccccEEEecCCCCC-CCC-ccccCCCCccE-EEec
Q 003890 503 CYIMKDLIEFFSLEHSDIYLQSFLNHSSESDHLALIDCENFCEKFKHLRILNLGSAVLV-QFP-PGLENLFHLKY-LKLN 579 (788)
Q Consensus 503 Ls~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~-~lp-~~i~~L~~L~~-L~L~ 579 (788)
+...++....+|..- .++++.|.+.++... .+++..|.++++|++|+|++|.+. .+| ..|.++.+|.. +.+.
T Consensus 14 v~C~~~~Lt~iP~~l-~~~l~~L~Ls~N~i~----~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~ 88 (350)
T 4ay9_X 14 FLCQESKVTEIPSDL-PRNAIELRFVLTKLR----VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88 (350)
T ss_dssp EEEESTTCCSCCTTC-CTTCSEEEEESCCCS----EECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred EEecCCCCCccCcCc-CCCCCEEEccCCcCC----CcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence 444444444333222 468999999998762 234578999999999999999975 465 45788988775 5667
Q ss_pred CCCCcccC-hhhcCCCCCcEEEccCCCCcccch-hhhcccccceeeccCc-cCCCCCcCCcCccc-cccccccccccccC
Q 003890 580 IPSLKCLP-SLLCTLLNLQTLEMPSSYVDQSPE-DIWMMQKLMHLNFGSI-TLPAPPKNYSSSLK-NLIFISTLNPSSCT 655 (788)
Q Consensus 580 ~~~i~~lp-~~i~~L~~L~~L~L~~~~l~~lp~-~l~~L~~L~~L~l~~~-~~~~~i~~~~~~l~-~L~~L~~~~~~~~~ 655 (788)
+|++..+| ..+.++++|++|++++|.+..+|. .+....++..|++.++ .+..-.+..|..+. .++.|++.++....
T Consensus 89 ~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~ 168 (350)
T 4ay9_X 89 ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE 168 (350)
T ss_dssp ETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCE
T ss_pred CCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccC
Confidence 78999885 567999999999999999988876 4566777888888654 33211112235543 67888887654433
Q ss_pred -ccccCCCCCCCeEEEEccCCcChhcHH-HhccCCCCCCEEEeecCCCCCcccccccCCCccccccc-cccccccccCcc
Q 003890 656 -PDILGRLPNVQTLRISGDLSCYHSGVS-KSLCELHKLECLKLVNERKPSRMVLYEYQFPPTDMARI-LSQLIRQEFVES 732 (788)
Q Consensus 656 -~~~l~~L~~L~~L~l~~~~~~~~~~~~-~~l~~l~~L~~L~L~~~~~~~~~~~~~~l~~~~~L~~L-~~~l~~~~lp~~ 732 (788)
........+|+.|.+.++. ....++ ..|.++++|+.|+|+++.... .....+..+++|+.+ .+++ ..+| .
T Consensus 169 i~~~~f~~~~L~~l~l~~~n--~l~~i~~~~f~~l~~L~~LdLs~N~l~~--lp~~~~~~L~~L~~l~~~~l--~~lP-~ 241 (350)
T 4ay9_X 169 IHNSAFNGTQLDELNLSDNN--NLEELPNDVFHGASGPVILDISRTRIHS--LPSYGLENLKKLRARSTYNL--KKLP-T 241 (350)
T ss_dssp ECTTSSTTEEEEEEECTTCT--TCCCCCTTTTTTEECCSEEECTTSCCCC--CCSSSCTTCCEEECTTCTTC--CCCC-C
T ss_pred CChhhccccchhHHhhccCC--cccCCCHHHhccCcccchhhcCCCCcCc--cChhhhccchHhhhccCCCc--CcCC-C
Confidence 3344556778889887654 445555 457899999999999765441 233456666677666 7778 8889 5
Q ss_pred cCCCCCcceEEEecccc
Q 003890 733 EMSLPLLQLLDLEESDE 749 (788)
Q Consensus 733 l~~l~~L~~L~L~~~~l 749 (788)
+..|++|+.++++++..
T Consensus 242 l~~l~~L~~l~l~~~~~ 258 (350)
T 4ay9_X 242 LEKLVALMEASLTYPSH 258 (350)
T ss_dssp TTTCCSCCEEECSCHHH
T ss_pred chhCcChhhCcCCCCcc
Confidence 88999999999987543
No 110
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.40 E-value=1.1e-12 Score=149.16 Aligned_cols=173 Identities=14% Similarity=0.061 Sum_probs=137.2
Q ss_pred CccEEEecCCCCcccChhhcCCCCCcEEEccCCCCcccchhhhcccccceeeccCccCCCCCcCCcCccccccccccccc
Q 003890 572 HLKYLKLNIPSLKCLPSLLCTLLNLQTLEMPSSYVDQSPEDIWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFISTLNP 651 (788)
Q Consensus 572 ~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~lp~~l~~L~~L~~L~l~~~~~~~~i~~~~~~l~~L~~L~~~~~ 651 (788)
+|++|++++|.+..+|..+. ++|++|++++|.+..+| ..+++|++|++++|.+.. +|. +++ +|++|++.++
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l~--~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N 130 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNLP--PQITVLEITQNALISLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVDNN 130 (571)
T ss_dssp TCSEEECCSSCCSCCCSCCC--TTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECCSS
T ss_pred CccEEEeCCCCCCccCHhHc--CCCCEEECcCCCCcccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECCCC
Confidence 89999999999999998774 79999999999999999 568999999999997764 655 454 8999999876
Q ss_pred cccCccccCCCCCCCeEEEEccCCcChhcHHHhccCCCCCCEEEeecCCCCCcccccccCCCccccccc---cccccccc
Q 003890 652 SSCTPDILGRLPNVQTLRISGDLSCYHSGVSKSLCELHKLECLKLVNERKPSRMVLYEYQFPPTDMARI---LSQLIRQE 728 (788)
Q Consensus 652 ~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~l~~~~~L~~L---~~~l~~~~ 728 (788)
....++. .+++|+.|++++|. ...++. .+++|+.|+|+++... ..+. +. ++|+.| .|.+ ..
T Consensus 131 ~l~~lp~--~l~~L~~L~Ls~N~---l~~lp~---~l~~L~~L~Ls~N~L~---~lp~-l~--~~L~~L~Ls~N~L--~~ 194 (571)
T 3cvr_A 131 QLTMLPE--LPALLEYINADNNQ---LTMLPE---LPTSLEVLSVRNNQLT---FLPE-LP--ESLEALDVSTNLL--ES 194 (571)
T ss_dssp CCSCCCC--CCTTCCEEECCSSC---CSCCCC---CCTTCCEEECCSSCCS---CCCC-CC--TTCCEEECCSSCC--SS
T ss_pred cCCCCCC--cCccccEEeCCCCc---cCcCCC---cCCCcCEEECCCCCCC---Ccch-hh--CCCCEEECcCCCC--Cc
Confidence 6554555 78999999999997 333443 5789999999976644 2233 44 899999 6778 68
Q ss_pred cCcccCCCCCc-------ceEEEeccccccccccCCcccccccccCCeeEecccCc
Q 003890 729 FVESEMSLPLL-------QLLDLEESDEEDDERSDILEILQDINDFVHESEEAIDT 777 (788)
Q Consensus 729 lp~~l~~l~~L-------~~L~L~~~~l~~~~~~~~l~~l~~L~~L~~L~L~~~~~ 777 (788)
+|. +.. +| +.|+|++|.+... .+.+..+++|++|+|++|+-
T Consensus 195 lp~-~~~--~L~~~~~~L~~L~Ls~N~l~~l-----p~~l~~l~~L~~L~L~~N~l 242 (571)
T 3cvr_A 195 LPA-VPV--RNHHSEETEIFFRCRENRITHI-----PENILSLDPTCTIILEDNPL 242 (571)
T ss_dssp CCC-CC----------CCEEEECCSSCCCCC-----CGGGGGSCTTEEEECCSSSC
T ss_pred hhh-HHH--hhhcccccceEEecCCCcceec-----CHHHhcCCCCCEEEeeCCcC
Confidence 887 544 67 9999999999853 44577899999999999863
No 111
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.38 E-value=1e-12 Score=142.21 Aligned_cols=78 Identities=22% Similarity=0.209 Sum_probs=59.5
Q ss_pred cEEEecCCCCCCCCccccCCCCccEEEecCCCCcccChh-hc-CCCCCcEEEccCCCCcccch-hhhcccccceeeccCc
Q 003890 551 RILNLGSAVLVQFPPGLENLFHLKYLKLNIPSLKCLPSL-LC-TLLNLQTLEMPSSYVDQSPE-DIWMMQKLMHLNFGSI 627 (788)
Q Consensus 551 ~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~lp~~-i~-~L~~L~~L~L~~~~l~~lp~-~l~~L~~L~~L~l~~~ 627 (788)
++++++++.++.+|..+.. .+++|+|++|.+..+|.. +. ++.+|++|+|++|.+..+|. .+.++++|++|++++|
T Consensus 21 ~~l~c~~~~l~~iP~~~~~--~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 98 (361)
T 2xot_A 21 NILSCSKQQLPNVPQSLPS--YTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN 98 (361)
T ss_dssp TEEECCSSCCSSCCSSCCT--TCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcCccCccCCC--CCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCC
Confidence 5788888888888876643 578888888888877654 44 78888888888888877764 5788888888888877
Q ss_pred cCC
Q 003890 628 TLP 630 (788)
Q Consensus 628 ~~~ 630 (788)
.+.
T Consensus 99 ~l~ 101 (361)
T 2xot_A 99 HLH 101 (361)
T ss_dssp CCC
T ss_pred cCC
Confidence 654
No 112
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.38 E-value=1.7e-13 Score=161.66 Aligned_cols=152 Identities=15% Similarity=0.086 Sum_probs=87.2
Q ss_pred CCceeEEEeecCcccccc--ccccccccceEEecCCCCchhhhhhhhhhhcCCccccEEEecCCCCCCCCccccCCCCcc
Q 003890 497 PANVKWCYIMKDLIEFFS--LEHSDIYLQSFLNHSSESDHLALIDCENFCEKFKHLRILNLGSAVLVQFPPGLENLFHLK 574 (788)
Q Consensus 497 ~~~~r~Ls~~~~~~~~~~--~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~i~~L~~L~ 574 (788)
...++++.+..+.....+ ... ..+|+.+.+............++..|..+++|+.|+|++|.+..+|..++++.+|+
T Consensus 172 ~~~~~~l~L~~n~~~~~~~~~l~-~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~ 250 (727)
T 4b8c_D 172 TPLTPKIELFANGKDEANQALLQ-HKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLT 250 (727)
T ss_dssp ---------------------------------------------------CCCCCCEEECTTSCCSCCCGGGGGCCSCS
T ss_pred CCccceEEeeCCCCCcchhhHhh-cCccCcccccCccccccceecChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCC
Confidence 345777777655544332 222 33444444333222111122456788899999999999999988998888999999
Q ss_pred EEEecCCCCcccChhhcCCCCCcEEEccCCCCcccchhhhcccccceeeccCccCCCCCcCCcCcccccccccccc
Q 003890 575 YLKLNIPSLKCLPSLLCTLLNLQTLEMPSSYVDQSPEDIWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFISTLN 650 (788)
Q Consensus 575 ~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~lp~~l~~L~~L~~L~l~~~~~~~~i~~~~~~l~~L~~L~~~~ 650 (788)
+|+|++|.+..+|..+++|.+|++|+|++|.+..+|..+++|++|++|+|++|.+. .+|..|+.+++|++|++.+
T Consensus 251 ~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~ 325 (727)
T 4b8c_D 251 RLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEG 325 (727)
T ss_dssp CCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTT
T ss_pred EEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCC
Confidence 99999999999998899999999999999988889988999999999999888664 4444446666666665554
No 113
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.37 E-value=1.3e-13 Score=149.46 Aligned_cols=238 Identities=16% Similarity=0.181 Sum_probs=161.8
Q ss_pred hhhhhhcCCccccEEEecCCCCCCCC-----ccccCCC-CccEEEecCCCCccc-ChhhcCC-----CCCcEEEccCCCC
Q 003890 539 DCENFCEKFKHLRILNLGSAVLVQFP-----PGLENLF-HLKYLKLNIPSLKCL-PSLLCTL-----LNLQTLEMPSSYV 606 (788)
Q Consensus 539 ~~~~~~~~l~~L~~L~L~~~~l~~lp-----~~i~~L~-~L~~L~L~~~~i~~l-p~~i~~L-----~~L~~L~L~~~~l 606 (788)
.+|.++...++|+.|+|++|.++..+ ..+..++ +|++|++++|.+... +..+..+ ++|++|++++|.+
T Consensus 13 ~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l 92 (362)
T 3goz_A 13 PVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFL 92 (362)
T ss_dssp HHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCG
T ss_pred HHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcC
Confidence 34567777777999999999998666 5678888 999999999999865 5556654 9999999999988
Q ss_pred cccch-hh----hcc-cccceeeccCccCCCCCcCC----cCc-ccccccccccccccc------CccccCCCC-CCCeE
Q 003890 607 DQSPE-DI----WMM-QKLMHLNFGSITLPAPPKNY----SSS-LKNLIFISTLNPSSC------TPDILGRLP-NVQTL 668 (788)
Q Consensus 607 ~~lp~-~l----~~L-~~L~~L~l~~~~~~~~i~~~----~~~-l~~L~~L~~~~~~~~------~~~~l~~L~-~L~~L 668 (788)
...+. .+ ..+ ++|++|++++|.+....+.. +.. .++|++|++.++... ....+..++ +|+.|
T Consensus 93 ~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L 172 (362)
T 3goz_A 93 SYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSL 172 (362)
T ss_dssp GGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEE
T ss_pred ChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEe
Confidence 76543 34 444 89999999999775433211 123 368999998865332 122345555 99999
Q ss_pred EEEccC--CcChhcHHHhccCC-CCCCEEEeecCCCCCccc--ccccCCC-ccccccc---cccccc---cccCcccCCC
Q 003890 669 RISGDL--SCYHSGVSKSLCEL-HKLECLKLVNERKPSRMV--LYEYQFP-PTDMARI---LSQLIR---QEFVESEMSL 736 (788)
Q Consensus 669 ~l~~~~--~~~~~~~~~~l~~l-~~L~~L~L~~~~~~~~~~--~~~~l~~-~~~L~~L---~~~l~~---~~lp~~l~~l 736 (788)
++++|. ......+...+... ++|+.|+|+++....... ....+.. +++|++| .|.+.+ ..++..+..+
T Consensus 173 ~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l 252 (362)
T 3goz_A 173 NLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSL 252 (362)
T ss_dssp ECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTT
T ss_pred eecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcC
Confidence 999997 11222334456666 599999999765331000 1223333 4589999 566622 1223455778
Q ss_pred CCcceEEEeccccccccc--cC-CcccccccccCCeeEecccC
Q 003890 737 PLLQLLDLEESDEEDDER--SD-ILEILQDINDFVHESEEAID 776 (788)
Q Consensus 737 ~~L~~L~L~~~~l~~~~~--~~-~l~~l~~L~~L~~L~L~~~~ 776 (788)
++|+.|+|++|.+..... .. ....+..+++|++|++++++
T Consensus 253 ~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~ 295 (362)
T 3goz_A 253 KHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKE 295 (362)
T ss_dssp TTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCB
T ss_pred CCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCc
Confidence 999999999998543200 00 11245678899999999886
No 114
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.37 E-value=3e-12 Score=128.18 Aligned_cols=126 Identities=17% Similarity=0.232 Sum_probs=73.0
Q ss_pred ccccEEEecCCCCCCCCc-cccCCCCccEEEecCCCCccc-ChhhcCCCCCcEEEccCCCCcccchh-hhcccccceeec
Q 003890 548 KHLRILNLGSAVLVQFPP-GLENLFHLKYLKLNIPSLKCL-PSLLCTLLNLQTLEMPSSYVDQSPED-IWMMQKLMHLNF 624 (788)
Q Consensus 548 ~~L~~L~L~~~~l~~lp~-~i~~L~~L~~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~~l~~lp~~-l~~L~~L~~L~l 624 (788)
++|+.|++++|.++.+|. .+..+.+|++|+|++|.+..+ |..+.++.+|++|+|++|.+..+|.. +..+++|++|++
T Consensus 32 ~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L 111 (220)
T 2v9t_B 32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLL 111 (220)
T ss_dssp TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEEC
Confidence 456777777777665543 566677777777777776655 55666777777777777766666654 466677777777
Q ss_pred cCccCCCCCcCCcCccccccccccccccccCc--cccCCCCCCCeEEEEcc
Q 003890 625 GSITLPAPPKNYSSSLKNLIFISTLNPSSCTP--DILGRLPNVQTLRISGD 673 (788)
Q Consensus 625 ~~~~~~~~i~~~~~~l~~L~~L~~~~~~~~~~--~~l~~L~~L~~L~l~~~ 673 (788)
++|.+....+..|..+++|+.|++.++....+ ..+..+++|+.|++++|
T Consensus 112 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 162 (220)
T 2v9t_B 112 NANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN 162 (220)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred CCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCC
Confidence 66655443333345555555555443322211 12444444444444444
No 115
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.34 E-value=4.1e-12 Score=127.16 Aligned_cols=125 Identities=13% Similarity=0.138 Sum_probs=63.2
Q ss_pred ccEEEecCCCCCCCC--ccccCCCCccEEEecCCCCcccCh-hhcCCCCCcEEEccCCCCcccch-hhhcccccceeecc
Q 003890 550 LRILNLGSAVLVQFP--PGLENLFHLKYLKLNIPSLKCLPS-LLCTLLNLQTLEMPSSYVDQSPE-DIWMMQKLMHLNFG 625 (788)
Q Consensus 550 L~~L~L~~~~l~~lp--~~i~~L~~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~l~~lp~-~l~~L~~L~~L~l~ 625 (788)
++.|+|++|.++.++ ..+..+.+|++|++++|.+..+|. .+.++.+|++|+|++|.+..+|. .+..+++|++|+++
T Consensus 34 ~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 113 (220)
T 2v70_A 34 TAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLR 113 (220)
T ss_dssp CSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECT
T ss_pred CCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECC
Confidence 455555555555442 224555555555555555555543 45555555555555555555543 25555555555555
Q ss_pred CccCCCCCcCCcCccccccccccccccccCccccCCCCCCCeEEEEccCCcChhcHHHhccCCCCCCEEEeec
Q 003890 626 SITLPAPPKNYSSSLKNLIFISTLNPSSCTPDILGRLPNVQTLRISGDLSCYHSGVSKSLCELHKLECLKLVN 698 (788)
Q Consensus 626 ~~~~~~~i~~~~~~l~~L~~L~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~L~~ 698 (788)
+|.+....|. .+..+++|+.|++++|. .....+..+..+++|+.|+|++
T Consensus 114 ~N~l~~~~~~----------------------~~~~l~~L~~L~L~~N~--l~~~~~~~~~~l~~L~~L~L~~ 162 (220)
T 2v70_A 114 SNRITCVGND----------------------SFIGLSSVRLLSLYDNQ--ITTVAPGAFDTLHSLSTLNLLA 162 (220)
T ss_dssp TSCCCCBCTT----------------------SSTTCTTCSEEECTTSC--CCCBCTTTTTTCTTCCEEECCS
T ss_pred CCcCCeECHh----------------------HcCCCccCCEEECCCCc--CCEECHHHhcCCCCCCEEEecC
Confidence 5544332222 34445555555555554 2222244455555555555554
No 116
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.34 E-value=5.9e-12 Score=126.85 Aligned_cols=108 Identities=26% Similarity=0.322 Sum_probs=71.8
Q ss_pred ccccceEEecCCCCchhhhhhhhhhhcCCccccEEEecCCCCCCCCcc-ccCCCCccEEEecCCCCcccChh-hcCCCCC
Q 003890 519 DIYLQSFLNHSSESDHLALIDCENFCEKFKHLRILNLGSAVLVQFPPG-LENLFHLKYLKLNIPSLKCLPSL-LCTLLNL 596 (788)
Q Consensus 519 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~-i~~L~~L~~L~L~~~~i~~lp~~-i~~L~~L 596 (788)
.++|+.|.+.++... ...+..|..+++|++|+|++|.+..+|.. +..+.+|++|+|++|.+..+|.. +..+.+|
T Consensus 39 ~~~L~~L~Ls~n~i~----~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L 114 (229)
T 3e6j_A 39 PTNAQILYLHDNQIT----KLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHL 114 (229)
T ss_dssp CTTCSEEECCSSCCC----CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred CCCCCEEEcCCCccC----ccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhh
Confidence 466777777766642 12335666777777777777777666543 46677777777777777766544 4667777
Q ss_pred cEEEccCCCCcccchhhhcccccceeeccCccCC
Q 003890 597 QTLEMPSSYVDQSPEDIWMMQKLMHLNFGSITLP 630 (788)
Q Consensus 597 ~~L~L~~~~l~~lp~~l~~L~~L~~L~l~~~~~~ 630 (788)
++|++++|.+..+|..+..+++|++|++++|.+.
T Consensus 115 ~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~ 148 (229)
T 3e6j_A 115 KELFMCCNKLTELPRGIERLTHLTHLALDQNQLK 148 (229)
T ss_dssp CEEECCSSCCCSCCTTGGGCTTCSEEECCSSCCC
T ss_pred CeEeccCCcccccCcccccCCCCCEEECCCCcCC
Confidence 7777777777777766777777777777766554
No 117
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.33 E-value=1.4e-14 Score=165.64 Aligned_cols=116 Identities=16% Similarity=0.124 Sum_probs=67.0
Q ss_pred ccccccccccccCccccCCCCCCCeEEEEccCCcChhcHHHhccCCCCCCEEEeecCCCCCcccccccCCCccccccc--
Q 003890 643 LIFISTLNPSSCTPDILGRLPNVQTLRISGDLSCYHSGVSKSLCELHKLECLKLVNERKPSRMVLYEYQFPPTDMARI-- 720 (788)
Q Consensus 643 L~~L~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~l~~~~~L~~L-- 720 (788)
|+.|++.++....++.++.+++|+.|++++|. ...+|..++++++|+.|+|+++... . ++.+..+++|+.|
T Consensus 443 L~~L~Ls~n~l~~lp~~~~l~~L~~L~Ls~N~---l~~lp~~~~~l~~L~~L~Ls~N~l~---~-lp~l~~l~~L~~L~L 515 (567)
T 1dce_A 443 VRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNR---LRALPPALAALRCLEVLQASDNALE---N-VDGVANLPRLQELLL 515 (567)
T ss_dssp CSEEECTTSCCSSCCCGGGGTTCCEEECCSSC---CCCCCGGGGGCTTCCEEECCSSCCC---C-CGGGTTCSSCCEEEC
T ss_pred ceEEEecCCCCCCCcCccccccCcEeecCccc---ccccchhhhcCCCCCEEECCCCCCC---C-CcccCCCCCCcEEEC
Confidence 34444443333223335555555555555554 2244455555555555555544332 1 2244445555555
Q ss_pred -ccccccccc--CcccCCCCCcceEEEeccccccccccCCccc----ccccccCCeeEe
Q 003890 721 -LSQLIRQEF--VESEMSLPLLQLLDLEESDEEDDERSDILEI----LQDINDFVHESE 772 (788)
Q Consensus 721 -~~~l~~~~l--p~~l~~l~~L~~L~L~~~~l~~~~~~~~l~~----l~~L~~L~~L~L 772 (788)
.|.+ ..+ |..++.+++|+.|+|++|++... ++. +..+|+|+.|++
T Consensus 516 s~N~l--~~~~~p~~l~~l~~L~~L~L~~N~l~~~-----~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 516 CNNRL--QQSAAIQPLVSCPRLVLLNLQGNSLCQE-----EGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp CSSCC--CSSSTTGGGGGCTTCCEEECTTSGGGGS-----SSCTTHHHHHCTTCSEEEC
T ss_pred CCCCC--CCCCCcHHHhcCCCCCEEEecCCcCCCC-----ccHHHHHHHHCcccCccCC
Confidence 4455 444 78888999999999999999864 232 345899999864
No 118
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.32 E-value=8.6e-14 Score=161.42 Aligned_cols=87 Identities=11% Similarity=0.051 Sum_probs=49.3
Q ss_pred hccCCCCCCEEEeecCCCCCcccccccCCC-ccccccc---cccccccccCcccCCCCCcceEEEeccccccccccCCcc
Q 003890 684 SLCELHKLECLKLVNERKPSRMVLYEYQFP-PTDMARI---LSQLIRQEFVESEMSLPLLQLLDLEESDEEDDERSDILE 759 (788)
Q Consensus 684 ~l~~l~~L~~L~L~~~~~~~~~~~~~~l~~-~~~L~~L---~~~l~~~~lp~~l~~l~~L~~L~L~~~~l~~~~~~~~l~ 759 (788)
.+..+++|+.|+|++ ...+ ..+..+.. +++|+.| .+.+.+..++.....+++|++|+|++|.+.+. .+.
T Consensus 427 l~~~~~~L~~L~L~~--~l~~-~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~----~~~ 499 (594)
T 2p1m_B 427 IVEHCKDLRRLSLSG--LLTD-KVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDK----ALL 499 (594)
T ss_dssp HHHHCTTCCEEECCS--SCCH-HHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHH----HHH
T ss_pred HHhhCCCccEEeecC--cccH-HHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHH----HHH
Confidence 344555666666653 1110 11222222 5667777 34442222332224578888888888888544 333
Q ss_pred -cccccccCCeeEecccCc
Q 003890 760 -ILQDINDFVHESEEAIDT 777 (788)
Q Consensus 760 -~l~~L~~L~~L~L~~~~~ 777 (788)
....+++|++|++++|+.
T Consensus 500 ~~~~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 500 ANASKLETMRSLWMSSCSV 518 (594)
T ss_dssp HTGGGGGGSSEEEEESSCC
T ss_pred HHHHhCCCCCEEeeeCCCC
Confidence 345688899999988865
No 119
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.32 E-value=7.2e-12 Score=126.22 Aligned_cols=126 Identities=19% Similarity=0.213 Sum_probs=79.3
Q ss_pred ccccEEEecCCCCCCC-CccccCCCCccEEEecCCCCcccChh-hcCCCCCcEEEccCCCCcccchh-hhcccccceeec
Q 003890 548 KHLRILNLGSAVLVQF-PPGLENLFHLKYLKLNIPSLKCLPSL-LCTLLNLQTLEMPSSYVDQSPED-IWMMQKLMHLNF 624 (788)
Q Consensus 548 ~~L~~L~L~~~~l~~l-p~~i~~L~~L~~L~L~~~~i~~lp~~-i~~L~~L~~L~L~~~~l~~lp~~-l~~L~~L~~L~l 624 (788)
++|++|+|++|.++.+ |..+..+.+|++|+|++|.+..+|.. +.++.+|++|+|++|.+..+|.. +..+++|++|++
T Consensus 40 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L 119 (229)
T 3e6j_A 40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFM 119 (229)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEec
Confidence 6677777777777755 55677777777777777777777644 47777777777777777777653 567777777777
Q ss_pred cCccCCCCCcCCcCccccccccccccccccCc--cccCCCCCCCeEEEEccC
Q 003890 625 GSITLPAPPKNYSSSLKNLIFISTLNPSSCTP--DILGRLPNVQTLRISGDL 674 (788)
Q Consensus 625 ~~~~~~~~i~~~~~~l~~L~~L~~~~~~~~~~--~~l~~L~~L~~L~l~~~~ 674 (788)
++|.+. .+|..+..+++|++|++.++....+ ..+..+++|+.|++.++.
T Consensus 120 s~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 170 (229)
T 3e6j_A 120 CCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNP 170 (229)
T ss_dssp CSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred cCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCC
Confidence 777554 3443345555555555554322221 124444445555544443
No 120
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.32 E-value=7e-12 Score=125.46 Aligned_cols=144 Identities=15% Similarity=0.121 Sum_probs=112.2
Q ss_pred EEeecCccccccccccccccceEEecCCCCchhhhhhhhhhhcCCccccEEEecCCCCCCC-CccccCCCCccEEEecCC
Q 003890 503 CYIMKDLIEFFSLEHSDIYLQSFLNHSSESDHLALIDCENFCEKFKHLRILNLGSAVLVQF-PPGLENLFHLKYLKLNIP 581 (788)
Q Consensus 503 Ls~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l-p~~i~~L~~L~~L~L~~~ 581 (788)
+...++....++..- .++|+.|.+.++... .+++..|..+++|++|+|++|.++.+ |..|.++.+|++|+|++|
T Consensus 16 v~c~~~~l~~iP~~l-~~~l~~L~l~~n~i~----~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 16 VDCRGKGLTEIPTNL-PETITEIRLEQNTIK----VIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp EECTTSCCSSCCSSC-CTTCCEEECCSSCCC----EECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred EEcCCCCcCcCCCcc-CcCCCEEECCCCcCC----CcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence 444444444333333 568899999888763 23346888999999999999998865 678999999999999999
Q ss_pred CCcccChh-hcCCCCCcEEEccCCCCcccc-hhhhcccccceeeccCccCCCCCcCCcCccccccccccccc
Q 003890 582 SLKCLPSL-LCTLLNLQTLEMPSSYVDQSP-EDIWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFISTLNP 651 (788)
Q Consensus 582 ~i~~lp~~-i~~L~~L~~L~L~~~~l~~lp-~~l~~L~~L~~L~l~~~~~~~~i~~~~~~l~~L~~L~~~~~ 651 (788)
.+..+|.. +.++.+|++|+|++|.+..++ ..+..+++|++|++++|.+....+..|..+++|++|++.++
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 162 (220)
T 2v9t_B 91 KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN 162 (220)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred cCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCC
Confidence 99998876 588999999999999888875 46889999999999998776544455688889999888754
No 121
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.32 E-value=6.3e-12 Score=125.79 Aligned_cols=145 Identities=13% Similarity=0.118 Sum_probs=109.0
Q ss_pred eEEEeecCccccccccccccccceEEecCCCCchhhhhhhhhhhcCCccccEEEecCCCCCCCCc-cccCCCCccEEEec
Q 003890 501 KWCYIMKDLIEFFSLEHSDIYLQSFLNHSSESDHLALIDCENFCEKFKHLRILNLGSAVLVQFPP-GLENLFHLKYLKLN 579 (788)
Q Consensus 501 r~Ls~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~-~i~~L~~L~~L~L~ 579 (788)
+.+.+.++....++..- .+.++.|.+.++...... .+..|..+++|++|+|++|.++.++. .|.++.+|++|+|+
T Consensus 14 ~~l~~s~n~l~~iP~~~-~~~~~~L~L~~N~l~~~~---~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls 89 (220)
T 2v70_A 14 TTVDCSNQKLNKIPEHI-PQYTAELRLNNNEFTVLE---ATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLT 89 (220)
T ss_dssp TEEECCSSCCSSCCSCC-CTTCSEEECCSSCCCEEC---CCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CEeEeCCCCcccCccCC-CCCCCEEEcCCCcCCccC---chhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECC
Confidence 35666666555444333 557788999888763211 12568899999999999999997665 78999999999999
Q ss_pred CCCCcccChh-hcCCCCCcEEEccCCCCccc-chhhhcccccceeeccCccCCCCCcCCcCccccccccccc
Q 003890 580 IPSLKCLPSL-LCTLLNLQTLEMPSSYVDQS-PEDIWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFISTL 649 (788)
Q Consensus 580 ~~~i~~lp~~-i~~L~~L~~L~L~~~~l~~l-p~~l~~L~~L~~L~l~~~~~~~~i~~~~~~l~~L~~L~~~ 649 (788)
+|.+..+|.. +.++++|++|+|++|.+..+ |..+..+++|++|++++|.+....|..|..+++|++|++.
T Consensus 90 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~ 161 (220)
T 2v70_A 90 SNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLL 161 (220)
T ss_dssp SSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEec
Confidence 9999988654 78999999999999988888 4578999999999999887764444444555555555544
No 122
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.29 E-value=7.1e-12 Score=119.65 Aligned_cols=128 Identities=19% Similarity=0.222 Sum_probs=74.8
Q ss_pred ccccceEEecCCCCchhhhhhhhhhhcCCccccEEEecCCCCCCCCccccCCCCccEEEecCCCCcc-cChhhcCCCCCc
Q 003890 519 DIYLQSFLNHSSESDHLALIDCENFCEKFKHLRILNLGSAVLVQFPPGLENLFHLKYLKLNIPSLKC-LPSLLCTLLNLQ 597 (788)
Q Consensus 519 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~-lp~~i~~L~~L~ 597 (788)
.++|+.|.+.++.... ..+|..+..+++|++|++++|.++.+ ..++.+++|++|++++|.+.. +|..+.++++|+
T Consensus 23 ~~~L~~L~l~~n~l~~---~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 98 (168)
T 2ell_A 23 PAAVRELVLDNCKSND---GKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLT 98 (168)
T ss_dssp TTSCSEEECCSCBCBT---TBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCC
T ss_pred cccCCEEECCCCCCCh---hhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCC
Confidence 4566666666665420 11234456666777777777766655 556666677777777776665 555555666777
Q ss_pred EEEccCCCCcccc--hhhhcccccceeeccCccCCCCCc---CCcCcccccccccccc
Q 003890 598 TLEMPSSYVDQSP--EDIWMMQKLMHLNFGSITLPAPPK---NYSSSLKNLIFISTLN 650 (788)
Q Consensus 598 ~L~L~~~~l~~lp--~~l~~L~~L~~L~l~~~~~~~~i~---~~~~~l~~L~~L~~~~ 650 (788)
+|++++|.+..+| ..+..+++|++|++++|.+....+ ..|..+++|+.|++.+
T Consensus 99 ~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~ 156 (168)
T 2ell_A 99 HLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYD 156 (168)
T ss_dssp EEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEE
T ss_pred EEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCC
Confidence 7777777666655 456666667777666664432111 1234455555555443
No 123
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.29 E-value=2.7e-13 Score=157.15 Aligned_cols=270 Identities=13% Similarity=0.079 Sum_probs=160.7
Q ss_pred CceeEEEeecCcccccc---c-cccccccceEEecCCCCchhhhhhhhhhhcCCccccEEEecCCCCCC-----CCcccc
Q 003890 498 ANVKWCYIMKDLIEFFS---L-EHSDIYLQSFLNHSSESDHLALIDCENFCEKFKHLRILNLGSAVLVQ-----FPPGLE 568 (788)
Q Consensus 498 ~~~r~Ls~~~~~~~~~~---~-~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~-----lp~~i~ 568 (788)
.++++|.+.++...... . .. +++|++|.+.++..... ..++..+.++++|++|++++|.++. ++....
T Consensus 105 ~~L~~L~L~~~~~~~~~~~~l~~~-~~~L~~L~L~~~~~~~~--~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~ 181 (594)
T 2p1m_B 105 TWLEEIRLKRMVVTDDCLELIAKS-FKNFKVLVLSSCEGFST--DGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPD 181 (594)
T ss_dssp TTCCEEEEESCBCCHHHHHHHHHH-CTTCCEEEEESCEEEEH--HHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCT
T ss_pred CCCCeEEeeCcEEcHHHHHHHHHh-CCCCcEEeCCCcCCCCH--HHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhh
Confidence 35778888866433211 2 24 78999999988743111 0123555678899999999988653 223334
Q ss_pred CCCCccEEEecCCC--Cc--ccChhhcCCCCCcEEEccCC-CCcccchhhhcccccceeeccCccC--------------
Q 003890 569 NLFHLKYLKLNIPS--LK--CLPSLLCTLLNLQTLEMPSS-YVDQSPEDIWMMQKLMHLNFGSITL-------------- 629 (788)
Q Consensus 569 ~L~~L~~L~L~~~~--i~--~lp~~i~~L~~L~~L~L~~~-~l~~lp~~l~~L~~L~~L~l~~~~~-------------- 629 (788)
.+++|++|++++|. +. .++.-+.++++|++|++++| .+..+|..+.++++|++|+++.+..
T Consensus 182 ~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l 261 (594)
T 2p1m_B 182 TYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVAL 261 (594)
T ss_dssp TCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHH
T ss_pred cCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHH
Confidence 67789999998876 32 23333456789999999988 6666777788888888887543310
Q ss_pred ----------------CCCCcCCcCcccccccccccccccc--Cc-cccCCCCCCCeEEEEccCCcChhcHHHhccCCCC
Q 003890 630 ----------------PAPPKNYSSSLKNLIFISTLNPSSC--TP-DILGRLPNVQTLRISGDLSCYHSGVSKSLCELHK 690 (788)
Q Consensus 630 ----------------~~~i~~~~~~l~~L~~L~~~~~~~~--~~-~~l~~L~~L~~L~l~~~~~~~~~~~~~~l~~l~~ 690 (788)
...++..+..+++|++|++..+... .+ ..+..+++|+.|++.++. ....+......+++
T Consensus 262 ~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~~--~~~~l~~l~~~~~~ 339 (594)
T 2p1m_B 262 SGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYI--EDAGLEVLASTCKD 339 (594)
T ss_dssp HTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGGG--HHHHHHHHHHHCTT
T ss_pred hcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCcc--CHHHHHHHHHhCCC
Confidence 1112222235677777777654421 11 125678889999998873 33334444445788
Q ss_pred CCEEEeecC--------CCCCcccccccC-CCccccccc---cccccccccCcccCCCCCcceEEEe--c----cccccc
Q 003890 691 LECLKLVNE--------RKPSRMVLYEYQ-FPPTDMARI---LSQLIRQEFVESEMSLPLLQLLDLE--E----SDEEDD 752 (788)
Q Consensus 691 L~~L~L~~~--------~~~~~~~~~~~l-~~~~~L~~L---~~~l~~~~lp~~l~~l~~L~~L~L~--~----~~l~~~ 752 (788)
|+.|+|+++ ...++ ..+..+ ..+++|++| ++.+.+..+......+++|+.|+|+ + +.++..
T Consensus 340 L~~L~L~~~~~~g~~~~~~l~~-~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~ 418 (594)
T 2p1m_B 340 LRELRVFPSEPFVMEPNVALTE-QGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLE 418 (594)
T ss_dssp CCEEEEECSCTTCSSCSSCCCH-HHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCC
T ss_pred CCEEEEecCcccccccCCCCCH-HHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCC
Confidence 999988531 11111 111122 236777777 4555222222222357899999999 3 344421
Q ss_pred ccc-CCcc-cccccccCCeeEecc
Q 003890 753 ERS-DILE-ILQDINDFVHESEEA 774 (788)
Q Consensus 753 ~~~-~~l~-~l~~L~~L~~L~L~~ 774 (788)
+. ..++ .+..+++|++|+|++
T Consensus 419 -~~~~~~~~l~~~~~~L~~L~L~~ 441 (594)
T 2p1m_B 419 -PLDIGFGAIVEHCKDLRRLSLSG 441 (594)
T ss_dssp -CTHHHHHHHHHHCTTCCEEECCS
T ss_pred -chhhHHHHHHhhCCCccEEeecC
Confidence 00 0111 256789999999976
No 124
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.28 E-value=4.3e-12 Score=118.52 Aligned_cols=127 Identities=19% Similarity=0.220 Sum_probs=84.9
Q ss_pred ccccceEEecCCCCchhhhhhhhhhhcCCccccEEEecCCCCCCCCccccCCCCccEEEecCCCCcc-cChhhcCCCCCc
Q 003890 519 DIYLQSFLNHSSESDHLALIDCENFCEKFKHLRILNLGSAVLVQFPPGLENLFHLKYLKLNIPSLKC-LPSLLCTLLNLQ 597 (788)
Q Consensus 519 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~-lp~~i~~L~~L~ 597 (788)
.++|+.|.+.++.... ..+|..+..+++|++|++++|.++.+ ..++.+++|++|++++|.+.. +|..++++++|+
T Consensus 16 ~~~l~~L~l~~n~l~~---~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~ 91 (149)
T 2je0_A 16 PSDVKELVLDNSRSNE---GKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLT 91 (149)
T ss_dssp GGGCSEEECTTCBCBT---TBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCC
T ss_pred CccCeEEEccCCcCCh---hHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCC
Confidence 5677777777776531 12235667777788888887777766 667777778888888777776 666666777788
Q ss_pred EEEccCCCCcccc--hhhhcccccceeeccCccCCCCCc---CCcCccccccccccc
Q 003890 598 TLEMPSSYVDQSP--EDIWMMQKLMHLNFGSITLPAPPK---NYSSSLKNLIFISTL 649 (788)
Q Consensus 598 ~L~L~~~~l~~lp--~~l~~L~~L~~L~l~~~~~~~~i~---~~~~~l~~L~~L~~~ 649 (788)
+|++++|.+..+| ..++.+++|++|++++|.+....+ ..++.+++|+.|++.
T Consensus 92 ~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 92 HLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp EEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred EEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 8888777777664 567777778888777775542211 124566666666543
No 125
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.26 E-value=3.8e-12 Score=118.92 Aligned_cols=129 Identities=18% Similarity=0.119 Sum_probs=98.1
Q ss_pred cCCccccEEEecCCCCC--CCCccccCCCCccEEEecCCCCcccChhhcCCCCCcEEEccCCCCcc-cchhhhcccccce
Q 003890 545 EKFKHLRILNLGSAVLV--QFPPGLENLFHLKYLKLNIPSLKCLPSLLCTLLNLQTLEMPSSYVDQ-SPEDIWMMQKLMH 621 (788)
Q Consensus 545 ~~l~~L~~L~L~~~~l~--~lp~~i~~L~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~-lp~~l~~L~~L~~ 621 (788)
...++|+.|++++|.++ .+|..++.+++|++|++++|.+..+ ..++++++|++|++++|.+.. +|..+.++++|++
T Consensus 14 ~~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~ 92 (149)
T 2je0_A 14 RTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTH 92 (149)
T ss_dssp CCGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCE
T ss_pred CCCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCE
Confidence 44578999999999998 8999899999999999999999988 788999999999999998887 7877888999999
Q ss_pred eeccCccCCCCCcCCcCccccccccccccccccCccccCCCCCCCeEEEEccCCcChhcHH---HhccCCCCCCEEEee
Q 003890 622 LNFGSITLPAPPKNYSSSLKNLIFISTLNPSSCTPDILGRLPNVQTLRISGDLSCYHSGVS---KSLCELHKLECLKLV 697 (788)
Q Consensus 622 L~l~~~~~~~~i~~~~~~l~~L~~L~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~---~~l~~l~~L~~L~L~ 697 (788)
|++++|.+.. ++ .+..++.+++|+.|++++|. .....+ ..+..+++|+.|+++
T Consensus 93 L~ls~N~i~~-~~--------------------~~~~~~~l~~L~~L~l~~N~--l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 93 LNLSGNKIKD-LS--------------------TIEPLKKLENLKSLDLFNCE--VTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp EECTTSCCCS-HH--------------------HHGGGGGCTTCCEEECTTCG--GGGSTTHHHHHHHHCTTCCEETTB
T ss_pred EECCCCcCCC-hH--------------------HHHHHhhCCCCCEEeCcCCc--ccchHHHHHHHHHHCCCcccccCC
Confidence 9999887643 10 01224455566666666664 111111 345666777777654
No 126
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.25 E-value=1.1e-11 Score=118.31 Aligned_cols=131 Identities=19% Similarity=0.142 Sum_probs=101.7
Q ss_pred cCCccccEEEecCCCCC--CCCccccCCCCccEEEecCCCCcccChhhcCCCCCcEEEccCCCCcc-cchhhhcccccce
Q 003890 545 EKFKHLRILNLGSAVLV--QFPPGLENLFHLKYLKLNIPSLKCLPSLLCTLLNLQTLEMPSSYVDQ-SPEDIWMMQKLMH 621 (788)
Q Consensus 545 ~~l~~L~~L~L~~~~l~--~lp~~i~~L~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~-lp~~l~~L~~L~~ 621 (788)
...++|+.|++++|.++ .+|..+..+++|++|++++|.+..+ ..+..+++|++|++++|.+.. +|..+.++++|++
T Consensus 21 ~~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 99 (168)
T 2ell_A 21 RTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTH 99 (168)
T ss_dssp SCTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCE
T ss_pred CCcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCE
Confidence 34578999999999998 8998899999999999999999988 788999999999999998887 7777778999999
Q ss_pred eeccCccCCCCCcCCcCccccccccccccccccCccccCCCCCCCeEEEEccCCcChhcHH----HhccCCCCCCEEEee
Q 003890 622 LNFGSITLPAPPKNYSSSLKNLIFISTLNPSSCTPDILGRLPNVQTLRISGDLSCYHSGVS----KSLCELHKLECLKLV 697 (788)
Q Consensus 622 L~l~~~~~~~~i~~~~~~l~~L~~L~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~----~~l~~l~~L~~L~L~ 697 (788)
|++++|.+.. ++ .+..+..+++|+.|++++|. ....+ ..+..+++|+.|+++
T Consensus 100 L~Ls~N~l~~-~~--------------------~~~~l~~l~~L~~L~l~~N~---l~~~~~~~~~~~~~l~~L~~L~l~ 155 (168)
T 2ell_A 100 LNLSGNKLKD-IS--------------------TLEPLKKLECLKSLDLFNCE---VTNLNDYRESVFKLLPQLTYLDGY 155 (168)
T ss_dssp EECBSSSCCS-SG--------------------GGGGGSSCSCCCEEECCSSG---GGTSTTHHHHHHTTCSSCCEETTE
T ss_pred EeccCCccCc-ch--------------------hHHHHhcCCCCCEEEeeCCc---CcchHHHHHHHHHhCccCcEecCC
Confidence 9999886643 21 01234556667777777665 22222 356677777777777
Q ss_pred cCC
Q 003890 698 NER 700 (788)
Q Consensus 698 ~~~ 700 (788)
++.
T Consensus 156 ~n~ 158 (168)
T 2ell_A 156 DRE 158 (168)
T ss_dssp ETT
T ss_pred CCC
Confidence 543
No 127
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.25 E-value=9.5e-11 Score=129.14 Aligned_cols=144 Identities=20% Similarity=0.159 Sum_probs=98.2
Q ss_pred CCcccchhcHHHHHHHH-hc---C-CCCcEEEEE--EcCCCChHHHHHHHHHcccCcccc-----cce-eEEEEeCCCCC
Q 003890 185 LDISEFERGREELFDLL-IE---G-PSGLSVVAI--LNGSGFDKTAFAADTYNNNHIKFY-----FDC-LAWVRVSIAYD 251 (788)
Q Consensus 185 ~~~vGr~~~~~~i~~~L-~~---~-~~~~~vi~I--~G~gGiGKTtLa~~v~~~~~~~~~-----F~~-~~wv~vs~~~~ 251 (788)
..++||+.+++++.++| .. + ......+.| +|++|+||||||+.+++. .... |.. .+|+.+....+
T Consensus 22 ~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 99 (412)
T 1w5s_A 22 PELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKR--VSEAAAKEGLTVKQAYVNAFNAPN 99 (412)
T ss_dssp SSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHH--HHHHHHHTTCCEEEEEEEGGGCCS
T ss_pred CCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHH--HHHHHhccCCceeEEEEECCCCCC
Confidence 67999999999999998 42 2 023455656 999999999999999984 3321 233 67888777778
Q ss_pred hHHHHHHHHHHcCCCCCCcccccCCHHHHHHHHHHHhc--CCcEEEEEeCCCC--C-----hhhHHHHhhhcCCC---C-
Q 003890 252 SGKILDDIIKSVMPPSRVSVIIGEDYKLKKTILRDYLT--NKKYFIVLDDVFN--D-----SDIWDDLEQVLPDN---Q- 318 (788)
Q Consensus 252 ~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~~l~--~kr~LlVLDdvw~--~-----~~~~~~l~~~l~~~---~- 318 (788)
...++..++.+++..... ...+...+...+.+.+. +++++||+||+|. . .+.+..+...+... +
T Consensus 100 ~~~~~~~l~~~l~~~~~~---~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~ 176 (412)
T 1w5s_A 100 LYTILSLIVRQTGYPIQV---RGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDG 176 (412)
T ss_dssp HHHHHHHHHHHHTCCCCC---TTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTTS
T ss_pred HHHHHHHHHHHhCCCCCC---CCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccCCC
Confidence 889999999998664321 23345666777777775 7899999999972 1 23344443333211 2
Q ss_pred -CCcEEEEecCChHHH
Q 003890 319 -NGSRVLITVTDLDLL 333 (788)
Q Consensus 319 -~gskIivTTR~~~v~ 333 (788)
....||+||+...+.
T Consensus 177 ~~~v~lI~~~~~~~~~ 192 (412)
T 1w5s_A 177 VNRIGFLLVASDVRAL 192 (412)
T ss_dssp CCBEEEEEEEEETHHH
T ss_pred CceEEEEEEeccccHH
Confidence 345588888765543
No 128
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.20 E-value=1.4e-11 Score=118.65 Aligned_cols=83 Identities=16% Similarity=0.135 Sum_probs=38.2
Q ss_pred cCCccccEEEecCCCCCCCCccccCCC-CccEEEecCCCCcccChhhcCCCCCcEEEccCCCCcccchhh-hccccccee
Q 003890 545 EKFKHLRILNLGSAVLVQFPPGLENLF-HLKYLKLNIPSLKCLPSLLCTLLNLQTLEMPSSYVDQSPEDI-WMMQKLMHL 622 (788)
Q Consensus 545 ~~l~~L~~L~L~~~~l~~lp~~i~~L~-~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~lp~~l-~~L~~L~~L 622 (788)
..+.+|+.|++++|.++.+|. +..+. +|++|++++|.+..+ ..++.+++|++|++++|.+..+|..+ ..+++|++|
T Consensus 16 ~~~~~L~~L~l~~n~l~~i~~-~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 93 (176)
T 1a9n_A 16 TNAVRDRELDLRGYKIPVIEN-LGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTEL 93 (176)
T ss_dssp ECTTSCEEEECTTSCCCSCCC-GGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEE
T ss_pred CCcCCceEEEeeCCCCchhHH-hhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhhcCCCCCEE
Confidence 334444555555554444432 33332 455555555544444 34444455555555555444444322 444555555
Q ss_pred eccCccC
Q 003890 623 NFGSITL 629 (788)
Q Consensus 623 ~l~~~~~ 629 (788)
++++|.+
T Consensus 94 ~L~~N~i 100 (176)
T 1a9n_A 94 ILTNNSL 100 (176)
T ss_dssp ECCSCCC
T ss_pred ECCCCcC
Confidence 5544433
No 129
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.20 E-value=7.2e-11 Score=115.39 Aligned_cols=122 Identities=16% Similarity=0.221 Sum_probs=68.1
Q ss_pred cEEEecCCCCCCCCccccCCCCccEEEecCCCCcccChhhcCCCCCcEEEccCCCCcccch-hhhcccccceeeccCccC
Q 003890 551 RILNLGSAVLVQFPPGLENLFHLKYLKLNIPSLKCLPSLLCTLLNLQTLEMPSSYVDQSPE-DIWMMQKLMHLNFGSITL 629 (788)
Q Consensus 551 ~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~lp~-~l~~L~~L~~L~l~~~~~ 629 (788)
++++++++.++.+|..+. .+|++|++++|.+..+|..+.++.+|++|+|++|.+..++. .|.++++|++|++++|.+
T Consensus 13 ~~l~~~~~~l~~ip~~~~--~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l 90 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGIP--RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRL 90 (193)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CEEEcCCCCCCcCCCCCC--CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCcc
Confidence 456666666666665443 35666666666666666666666666666666666666553 466666666666666654
Q ss_pred CCCCcCCcCccccccccccccccccCcc--ccCCCCCCCeEEEEccC
Q 003890 630 PAPPKNYSSSLKNLIFISTLNPSSCTPD--ILGRLPNVQTLRISGDL 674 (788)
Q Consensus 630 ~~~i~~~~~~l~~L~~L~~~~~~~~~~~--~l~~L~~L~~L~l~~~~ 674 (788)
....+..|+.+++|+.|++.++....+. .+..+++|+.|+++++.
T Consensus 91 ~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 137 (193)
T 2wfh_A 91 RCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANP 137 (193)
T ss_dssp CBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSC
T ss_pred CEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCC
Confidence 4332233345555555554433222211 24555566666666554
No 130
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.19 E-value=2.2e-11 Score=131.74 Aligned_cols=124 Identities=15% Similarity=0.116 Sum_probs=71.4
Q ss_pred EEEeecCccccccccccccccceEEecCCCCchhhhhhhhhhhc-CCccccEEEecCCCCCCCC-ccccCCCCccEEEec
Q 003890 502 WCYIMKDLIEFFSLEHSDIYLQSFLNHSSESDHLALIDCENFCE-KFKHLRILNLGSAVLVQFP-PGLENLFHLKYLKLN 579 (788)
Q Consensus 502 ~Ls~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~-~l~~L~~L~L~~~~l~~lp-~~i~~L~~L~~L~L~ 579 (788)
.+.+.++....++..- .+.++.|.+.++... .+.+..|. .+++|+.|+|++|.|+.++ ..|.++.+|++|+|+
T Consensus 22 ~l~c~~~~l~~iP~~~-~~~l~~L~Ls~N~l~----~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls 96 (361)
T 2xot_A 22 ILSCSKQQLPNVPQSL-PSYTALLDLSHNNLS----RLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLS 96 (361)
T ss_dssp EEECCSSCCSSCCSSC-CTTCSEEECCSSCCC----EECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred EEEeCCCCcCccCccC-CCCCCEEECCCCCCC----ccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECC
Confidence 3444444333333222 345666666666542 12234454 6666666666666666554 346666666666666
Q ss_pred CCCCcccCh-hhcCCCCCcEEEccCCCCcccc-hhhhcccccceeeccCccCC
Q 003890 580 IPSLKCLPS-LLCTLLNLQTLEMPSSYVDQSP-EDIWMMQKLMHLNFGSITLP 630 (788)
Q Consensus 580 ~~~i~~lp~-~i~~L~~L~~L~L~~~~l~~lp-~~l~~L~~L~~L~l~~~~~~ 630 (788)
+|.+..+|. .+.++.+|++|+|++|.+..++ ..+.++++|++|++++|.+.
T Consensus 97 ~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~ 149 (361)
T 2xot_A 97 SNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQIS 149 (361)
T ss_dssp SSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC
T ss_pred CCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCC
Confidence 666666644 3566666666666666666553 35666666666666666544
No 131
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.16 E-value=1.2e-11 Score=146.05 Aligned_cols=119 Identities=18% Similarity=0.155 Sum_probs=98.3
Q ss_pred ccccccccceEEecCCCCchhhhhhhhhhhcCCccccEEEecCCCCCCCCccccCCCCccEEEecCCCCcccChhhcCCC
Q 003890 515 LEHSDIYLQSFLNHSSESDHLALIDCENFCEKFKHLRILNLGSAVLVQFPPGLENLFHLKYLKLNIPSLKCLPSLLCTLL 594 (788)
Q Consensus 515 ~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~lp~~i~~L~ 594 (788)
+.. +++|+.|.+.++... . ++..+..+++|++|+|++|.|+.+|..|++|.+|++|+|++|.|..+|..+++|.
T Consensus 220 ~~~-l~~L~~L~Ls~n~l~-~----l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~ 293 (727)
T 4b8c_D 220 KYD-DQLWHALDLSNLQIF-N----ISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCF 293 (727)
T ss_dssp --C-CCCCCEEECTTSCCS-C----CCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGT
T ss_pred hcc-CCCCcEEECCCCCCC-C----CChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCC
Confidence 445 788999999888763 2 2244458899999999999999999999999999999999999999999999999
Q ss_pred CCcEEEccCCCCcccchhhhcccccceeeccCccCCCCCcCCcCc
Q 003890 595 NLQTLEMPSSYVDQSPEDIWMMQKLMHLNFGSITLPAPPKNYSSS 639 (788)
Q Consensus 595 ~L~~L~L~~~~l~~lp~~l~~L~~L~~L~l~~~~~~~~i~~~~~~ 639 (788)
+|++|+|++|.+..+|..|++|++|++|++++|.+...+|..++.
T Consensus 294 ~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~ 338 (727)
T 4b8c_D 294 QLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLEKQFLKILTE 338 (727)
T ss_dssp TCSEEECCSSCCCCCCSSTTSCTTCCCEECTTSCCCSHHHHHHHH
T ss_pred CCCEEECCCCCCCccChhhhcCCCccEEeCCCCccCCCChHHHhh
Confidence 999999999988899988999999999999998887655544443
No 132
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.16 E-value=8.5e-11 Score=114.81 Aligned_cols=97 Identities=18% Similarity=0.172 Sum_probs=61.4
Q ss_pred cEEEecCCCCCCCCccccCCCCccEEEecCCCCcccChh--hcCCCCCcEEEccCCCCccc-chhhhcccccceeeccCc
Q 003890 551 RILNLGSAVLVQFPPGLENLFHLKYLKLNIPSLKCLPSL--LCTLLNLQTLEMPSSYVDQS-PEDIWMMQKLMHLNFGSI 627 (788)
Q Consensus 551 ~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~lp~~--i~~L~~L~~L~L~~~~l~~l-p~~l~~L~~L~~L~l~~~ 627 (788)
++++++++.++.+|..+.. +|++|++++|.+..+|.. ++++++|++|+|++|.+..+ |..+.++++|++|++++|
T Consensus 11 ~~l~~s~~~l~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 88 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN 88 (192)
T ss_dssp TEEECTTSCCSSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred CEEEcCCCCcCcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCC
Confidence 5677777777777766544 777777777777776643 67777777777777766666 446777777777777766
Q ss_pred cCCCCCcCCcCccccccccccc
Q 003890 628 TLPAPPKNYSSSLKNLIFISTL 649 (788)
Q Consensus 628 ~~~~~i~~~~~~l~~L~~L~~~ 649 (788)
.+....+..|+.+++|++|++.
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~ 110 (192)
T 1w8a_A 89 KIKEISNKMFLGLHQLKTLNLY 110 (192)
T ss_dssp CCCEECSSSSTTCTTCCEEECC
T ss_pred cCCccCHHHhcCCCCCCEEECC
Confidence 5543322223444444444333
No 133
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.15 E-value=5.1e-11 Score=114.65 Aligned_cols=127 Identities=13% Similarity=0.126 Sum_probs=95.9
Q ss_pred ccccccccceEEecCCCCchhhhhhhhhhhcCCccccEEEecCCCCCCCCccccCCCCccEEEecCCCCcccChhh-cCC
Q 003890 515 LEHSDIYLQSFLNHSSESDHLALIDCENFCEKFKHLRILNLGSAVLVQFPPGLENLFHLKYLKLNIPSLKCLPSLL-CTL 593 (788)
Q Consensus 515 ~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~lp~~i-~~L 593 (788)
... +++|+.|.+.++... .+ +......++|++|++++|.++.+ ..++.+.+|++|++++|.+..+|+.+ ..+
T Consensus 15 ~~~-~~~L~~L~l~~n~l~-~i----~~~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l 87 (176)
T 1a9n_A 15 YTN-AVRDRELDLRGYKIP-VI----ENLGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQAL 87 (176)
T ss_dssp EEC-TTSCEEEECTTSCCC-SC----CCGGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHC
T ss_pred cCC-cCCceEEEeeCCCCc-hh----HHhhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhhcC
Confidence 344 788899999888763 22 23333344899999999999877 67888999999999999999888665 889
Q ss_pred CCCcEEEccCCCCcccch--hhhcccccceeeccCccCCCCCcCC----cCccccccccccc
Q 003890 594 LNLQTLEMPSSYVDQSPE--DIWMMQKLMHLNFGSITLPAPPKNY----SSSLKNLIFISTL 649 (788)
Q Consensus 594 ~~L~~L~L~~~~l~~lp~--~l~~L~~L~~L~l~~~~~~~~i~~~----~~~l~~L~~L~~~ 649 (788)
++|++|++++|.+..+|. .+..+++|++|++++|.+. .+|.+ ++.+++|+.|++.
T Consensus 88 ~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~ 148 (176)
T 1a9n_A 88 PDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQ 148 (176)
T ss_dssp TTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTE
T ss_pred CCCCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCC
Confidence 999999999998888887 7889999999999888654 23221 3445555555444
No 134
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.12 E-value=1.3e-10 Score=132.96 Aligned_cols=98 Identities=21% Similarity=0.284 Sum_probs=58.8
Q ss_pred ccEEEecCCCCCCCCccccCCCCccEEEecCCCCcccChhhcCCCCCcEEEccCCCCcccchhhhcccccceeeccCccC
Q 003890 550 LRILNLGSAVLVQFPPGLENLFHLKYLKLNIPSLKCLPSLLCTLLNLQTLEMPSSYVDQSPEDIWMMQKLMHLNFGSITL 629 (788)
Q Consensus 550 L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~lp~~l~~L~~L~~L~l~~~~~ 629 (788)
|++|+|++|.++.+|. ++.+.+|++|+|++|.+..+|..++++++|++|+|++|.+..+| .++++++|+.|++++|.+
T Consensus 443 L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls~N~l 520 (567)
T 1dce_A 443 VRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCNNRL 520 (567)
T ss_dssp CSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCSSCC
T ss_pred ceEEEecCCCCCCCcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEECCCCCC
Confidence 6666666666666664 66666666666666666666666666666666666666666666 466666666666666655
Q ss_pred CCCC-cCCcCccccccccccc
Q 003890 630 PAPP-KNYSSSLKNLIFISTL 649 (788)
Q Consensus 630 ~~~i-~~~~~~l~~L~~L~~~ 649 (788)
.... |..|+.+++|+.|++.
T Consensus 521 ~~~~~p~~l~~l~~L~~L~L~ 541 (567)
T 1dce_A 521 QQSAAIQPLVSCPRLVLLNLQ 541 (567)
T ss_dssp CSSSTTGGGGGCTTCCEEECT
T ss_pred CCCCCcHHHhcCCCCCEEEec
Confidence 4322 3333444444444444
No 135
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.08 E-value=1.9e-10 Score=122.61 Aligned_cols=237 Identities=12% Similarity=0.004 Sum_probs=137.7
Q ss_pred ccccceEEecCCCCchhhhhhhhhhhcC-CccccEEEecCCCCC--------------------CCC-ccccC-------
Q 003890 519 DIYLQSFLNHSSESDHLALIDCENFCEK-FKHLRILNLGSAVLV--------------------QFP-PGLEN------- 569 (788)
Q Consensus 519 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~~-l~~L~~L~L~~~~l~--------------------~lp-~~i~~------- 569 (788)
+++++.|.+.+.-....+ ..+.. +++|++|||++|.+. .+| ..|.+
T Consensus 24 ~~~l~~L~l~g~i~~~~~-----~~l~~~l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~ 98 (329)
T 3sb4_A 24 ANSITHLTLTGKLNAEDF-----RHLRDEFPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTK 98 (329)
T ss_dssp HHHCSEEEEEEEECHHHH-----HHHHHSCTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEE
T ss_pred hCceeEEEEeccccHHHH-----HHHHHhhccCeEEecCcceeEEecCccccccccccccccccccCHHHhccccccccc
Confidence 567777877765432222 22333 778888888888876 122 23444
Q ss_pred -CCCccEEEecCCCCcccCh-hhcCCCCCcEEEccCCCCcccch-hhhcccccceeeccCccC---CCCCc-CCcCcccc
Q 003890 570 -LFHLKYLKLNIPSLKCLPS-LLCTLLNLQTLEMPSSYVDQSPE-DIWMMQKLMHLNFGSITL---PAPPK-NYSSSLKN 642 (788)
Q Consensus 570 -L~~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~l~~lp~-~l~~L~~L~~L~l~~~~~---~~~i~-~~~~~l~~ 642 (788)
+.+|+.|.|.. .+..++. .+.+|.+|+.|++.+|.+..++. .|..+.++..+....... ...+. ..|.++.+
T Consensus 99 g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~ 177 (329)
T 3sb4_A 99 GKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEP 177 (329)
T ss_dssp ECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCC
T ss_pred ccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccc
Confidence 66666666666 5666644 35666677777776666555554 355555555555433100 00010 00122223
Q ss_pred cc-ccccc-------------------------ccc-ccCcccc-CCCCCCCeEEEEccCCcChhcHHHhccCCCCCCEE
Q 003890 643 LI-FISTL-------------------------NPS-SCTPDIL-GRLPNVQTLRISGDLSCYHSGVSKSLCELHKLECL 694 (788)
Q Consensus 643 L~-~L~~~-------------------------~~~-~~~~~~l-~~L~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L 694 (788)
|+ .+.+. +.- ......+ ..+++|+.|++.++. ...-....|.++++|+.|
T Consensus 178 L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~--i~~I~~~aF~~~~~L~~l 255 (329)
T 3sb4_A 178 LETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTN--ATTIPDFTFAQKKYLLKI 255 (329)
T ss_dssp CEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBC--CCEECTTTTTTCTTCCEE
T ss_pred cceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCC--cceecHhhhhCCCCCCEE
Confidence 32 11100 000 0000000 126788888888765 333334568888899999
Q ss_pred EeecCCCCCcccccccCCCccccc-cc--cccccccccC-cccCCCCCcceEEEeccccccccccCCcccccccccCCee
Q 003890 695 KLVNERKPSRMVLYEYQFPPTDMA-RI--LSQLIRQEFV-ESEMSLPLLQLLDLEESDEEDDERSDILEILQDINDFVHE 770 (788)
Q Consensus 695 ~L~~~~~~~~~~~~~~l~~~~~L~-~L--~~~l~~~~lp-~~l~~l~~L~~L~L~~~~l~~~~~~~~l~~l~~L~~L~~L 770 (788)
+|.++-.. .....+..+++|+ .| .+.+ ..++ ..|..+++|+.|++++|.+... ....|.++++|+.|
T Consensus 256 ~l~~ni~~---I~~~aF~~~~~L~~~l~l~~~l--~~I~~~aF~~c~~L~~l~l~~n~i~~I----~~~aF~~~~~L~~l 326 (329)
T 3sb4_A 256 KLPHNLKT---IGQRVFSNCGRLAGTLELPASV--TAIEFGAFMGCDNLRYVLATGDKITTL----GDELFGNGVPSKLI 326 (329)
T ss_dssp ECCTTCCE---ECTTTTTTCTTCCEEEEECTTC--CEECTTTTTTCTTEEEEEECSSCCCEE----CTTTTCTTCCCCEE
T ss_pred ECCcccce---ehHHHhhCChhccEEEEEcccc--eEEchhhhhCCccCCEEEeCCCccCcc----chhhhcCCcchhhh
Confidence 99864222 4556778888898 77 3455 5553 5677889999999988888876 55678889999888
Q ss_pred Ee
Q 003890 771 SE 772 (788)
Q Consensus 771 ~L 772 (788)
+.
T Consensus 327 y~ 328 (329)
T 3sb4_A 327 YK 328 (329)
T ss_dssp EC
T ss_pred cc
Confidence 64
No 136
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.07 E-value=3.2e-10 Score=110.68 Aligned_cols=124 Identities=18% Similarity=0.211 Sum_probs=70.6
Q ss_pred EEEeecCccccccccccccccceEEecCCCCchhhhhhhh-hhhcCCccccEEEecCCCCCCC-CccccCCCCccEEEec
Q 003890 502 WCYIMKDLIEFFSLEHSDIYLQSFLNHSSESDHLALIDCE-NFCEKFKHLRILNLGSAVLVQF-PPGLENLFHLKYLKLN 579 (788)
Q Consensus 502 ~Ls~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~-~~~~~l~~L~~L~L~~~~l~~l-p~~i~~L~~L~~L~L~ 579 (788)
.+.+.++....++..- .++++.|.+.++.... +++ ..|..+++|++|+|++|.++.+ |..|.++.+|++|+|+
T Consensus 12 ~l~~s~~~l~~ip~~~-~~~l~~L~l~~n~i~~----~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 86 (192)
T 1w8a_A 12 TVDCTGRGLKEIPRDI-PLHTTELLLNDNELGR----ISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG 86 (192)
T ss_dssp EEECTTSCCSSCCSCC-CTTCSEEECCSCCCCS----BCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred EEEcCCCCcCcCccCC-CCCCCEEECCCCcCCc----cCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECC
Confidence 4444444433333222 3466666666665421 111 2356666666666666666644 4556666666666666
Q ss_pred CCCCcccCh-hhcCCCCCcEEEccCCCCccc-chhhhcccccceeeccCccCC
Q 003890 580 IPSLKCLPS-LLCTLLNLQTLEMPSSYVDQS-PEDIWMMQKLMHLNFGSITLP 630 (788)
Q Consensus 580 ~~~i~~lp~-~i~~L~~L~~L~L~~~~l~~l-p~~l~~L~~L~~L~l~~~~~~ 630 (788)
+|.+..+|. .+.++++|++|++++|.+..+ |..+..+++|++|++++|.+.
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 87 ENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp SCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred CCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence 666665543 356666666666666666555 345666666666666666554
No 137
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.07 E-value=2.6e-12 Score=126.39 Aligned_cols=129 Identities=17% Similarity=0.175 Sum_probs=83.1
Q ss_pred hhhcCCccccEEEecCCCCCCCCccccCCCCccEEEecCCCCcccChhhcCCCCCcEEEccCCCCcccchhhhcccccce
Q 003890 542 NFCEKFKHLRILNLGSAVLVQFPPGLENLFHLKYLKLNIPSLKCLPSLLCTLLNLQTLEMPSSYVDQSPEDIWMMQKLMH 621 (788)
Q Consensus 542 ~~~~~l~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~lp~~l~~L~~L~~ 621 (788)
..|..+++|++|++++|.++.+| .+..+.+|++|++++|.+..+|..+..+++|++|++++|.+..+| .+..+++|++
T Consensus 42 ~~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~l~-~~~~l~~L~~ 119 (198)
T 1ds9_A 42 ATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLS-GIEKLVNLRV 119 (198)
T ss_dssp HHHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCCHH-HHHHHHHSSE
T ss_pred HHHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCcCC-ccccCCCCCE
Confidence 36666777777777777776666 666677777777777777677666666667777777777666666 3666777777
Q ss_pred eeccCccCCCCCcCCcCccccccccccccccccCccccCCCCCCCeEEEEccCCcChhcHH----------HhccCCCCC
Q 003890 622 LNFGSITLPAPPKNYSSSLKNLIFISTLNPSSCTPDILGRLPNVQTLRISGDLSCYHSGVS----------KSLCELHKL 691 (788)
Q Consensus 622 L~l~~~~~~~~i~~~~~~l~~L~~L~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~----------~~l~~l~~L 691 (788)
|++++|.+.. + . .+..+..+++|+.|++++|. .....+ ..+..+++|
T Consensus 120 L~l~~N~i~~-~----~----------------~~~~l~~l~~L~~L~l~~N~--l~~~~~~~~~~~~~~~~~~~~l~~L 176 (198)
T 1ds9_A 120 LYMSNNKITN-W----G----------------EIDKLAALDKLEDLLLAGNP--LYNDYKENNATSEYRIEVVKRLPNL 176 (198)
T ss_dssp EEESEEECCC-H----H----------------HHHHHTTTTTCSEEEECSCH--HHHHHHTTTTHHHHHHHHHHHCSSC
T ss_pred EECCCCcCCc-h----h----------------HHHHHhcCCCCCEEEecCCc--cccccccccchHHHHHHHHHhCCCc
Confidence 7776654431 1 0 01235667788888888875 222211 236777888
Q ss_pred CEEE
Q 003890 692 ECLK 695 (788)
Q Consensus 692 ~~L~ 695 (788)
+.|+
T Consensus 177 ~~Ld 180 (198)
T 1ds9_A 177 KKLD 180 (198)
T ss_dssp SEEC
T ss_pred EEEC
Confidence 8776
No 138
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.04 E-value=1.4e-08 Score=110.68 Aligned_cols=144 Identities=19% Similarity=0.157 Sum_probs=102.0
Q ss_pred CCcccchhcHHHHHHHHhcC----CCCcEEEEEEcCCCChHHHHHHHHHcccCccccc-ceeEEEEeCCCCChHHHHHHH
Q 003890 185 LDISEFERGREELFDLLIEG----PSGLSVVAILNGSGFDKTAFAADTYNNNHIKFYF-DCLAWVRVSIAYDSGKILDDI 259 (788)
Q Consensus 185 ~~~vGr~~~~~~i~~~L~~~----~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F-~~~~wv~vs~~~~~~~~~~~i 259 (788)
..++||+.+++++.+++... ....+.+.|+|.+|+||||||+.+++. ..... ...+|++++...+...+...+
T Consensus 17 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~--~~~~~~~~~~~i~~~~~~~~~~~~~~l 94 (389)
T 1fnn_A 17 KRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWEL--YKDKTTARFVYINGFIYRNFTAIIGEI 94 (389)
T ss_dssp SCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHH--HTTSCCCEEEEEETTTCCSHHHHHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHH--HhhhcCeeEEEEeCccCCCHHHHHHHH
Confidence 67999999999999998652 222348999999999999999999984 33321 236778877877888899999
Q ss_pred HHHcCCCCCCcccccCCHHHHHHHHHHHhc--CCcEEEEEeCCCC-ChhhHHHHhhhcCCCC----CCcEEEEecCChHH
Q 003890 260 IKSVMPPSRVSVIIGEDYKLKKTILRDYLT--NKKYFIVLDDVFN-DSDIWDDLEQVLPDNQ----NGSRVLITVTDLDL 332 (788)
Q Consensus 260 l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~--~kr~LlVLDdvw~-~~~~~~~l~~~l~~~~----~gskIivTTR~~~v 332 (788)
+..++..... ...+...+...+.+.+. +++.+||||+++. +...+..+...+.... .+..||+||+....
T Consensus 95 ~~~l~~~~~~---~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~ 171 (389)
T 1fnn_A 95 ARSLNIPFPR---RGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDAV 171 (389)
T ss_dssp HHHTTCCCCS---SCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHH
T ss_pred HHHhCccCCC---CCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECCchH
Confidence 9988654321 23355666666666664 5789999999962 3455566655554321 36778888876644
Q ss_pred H
Q 003890 333 L 333 (788)
Q Consensus 333 ~ 333 (788)
.
T Consensus 172 ~ 172 (389)
T 1fnn_A 172 L 172 (389)
T ss_dssp H
T ss_pred H
Confidence 3
No 139
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.03 E-value=1e-09 Score=105.56 Aligned_cols=125 Identities=15% Similarity=0.151 Sum_probs=88.1
Q ss_pred EEEeecCccccccccccccccceEEecCCCCchhhhhhhhhhhcCCccccEEEecCCCCCCCCcc-ccCCCCccEEEecC
Q 003890 502 WCYIMKDLIEFFSLEHSDIYLQSFLNHSSESDHLALIDCENFCEKFKHLRILNLGSAVLVQFPPG-LENLFHLKYLKLNI 580 (788)
Q Consensus 502 ~Ls~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~-i~~L~~L~~L~L~~ 580 (788)
.+.+.++.....+..- .++|+.|.+.++... ..++..|..+++|++|++++|.++.+|.. +..+.+|++|++++
T Consensus 11 ~l~~~~~~l~~~p~~~-~~~l~~L~l~~n~l~----~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 85 (177)
T 2o6r_A 11 EIRCNSKGLTSVPTGI-PSSATRLELESNKLQ----SLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE 85 (177)
T ss_dssp EEECCSSCCSSCCTTC-CTTCSEEECCSSCCC----CCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred EEEecCCCCccCCCCC-CCCCcEEEeCCCccc----EeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence 4444444444333333 567888888877652 23345677888888888888888876654 57788888888888
Q ss_pred CCCcccChh-hcCCCCCcEEEccCCCCcccchh-hhcccccceeeccCccCCC
Q 003890 581 PSLKCLPSL-LCTLLNLQTLEMPSSYVDQSPED-IWMMQKLMHLNFGSITLPA 631 (788)
Q Consensus 581 ~~i~~lp~~-i~~L~~L~~L~L~~~~l~~lp~~-l~~L~~L~~L~l~~~~~~~ 631 (788)
|.+..+|.. +.++++|++|++++|.+..+|.. +..+++|++|++++|.+..
T Consensus 86 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~ 138 (177)
T 2o6r_A 86 NKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 138 (177)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred CCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeec
Confidence 888877654 57788888888888877777764 5678888888888776653
No 140
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.01 E-value=1.1e-09 Score=106.93 Aligned_cols=123 Identities=12% Similarity=0.149 Sum_probs=101.4
Q ss_pred cEEEecCCCCcccChhhcCCCCCcEEEccCCCCcccchhhhcccccceeeccCccCCCCCcCCcCccccccccccccccc
Q 003890 574 KYLKLNIPSLKCLPSLLCTLLNLQTLEMPSSYVDQSPEDIWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFISTLNPSS 653 (788)
Q Consensus 574 ~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~lp~~l~~L~~L~~L~l~~~~~~~~i~~~~~~l~~L~~L~~~~~~~ 653 (788)
++++++++.+..+|..+. .+|++|++++|.+..+|..+.++++|++|++++|.+....+..|..+++|++|++.++..
T Consensus 13 ~~l~~~~~~l~~ip~~~~--~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l 90 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGIP--RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRL 90 (193)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CEEEcCCCCCCcCCCCCC--CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCcc
Confidence 689999999999998764 589999999999999998899999999999999988765555679999999999987654
Q ss_pred cCc--cccCCCCCCCeEEEEccCCcChhcHHHhccCCCCCCEEEeecCC
Q 003890 654 CTP--DILGRLPNVQTLRISGDLSCYHSGVSKSLCELHKLECLKLVNER 700 (788)
Q Consensus 654 ~~~--~~l~~L~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~ 700 (788)
..+ ..+..+++|+.|+++++. .....+..+..+++|+.|+|+++.
T Consensus 91 ~~i~~~~f~~l~~L~~L~L~~N~--l~~~~~~~~~~l~~L~~L~L~~N~ 137 (193)
T 2wfh_A 91 RCIPPRTFDGLKSLRLLSLHGND--ISVVPEGAFNDLSALSHLAIGANP 137 (193)
T ss_dssp CBCCTTTTTTCTTCCEEECCSSC--CCBCCTTTTTTCTTCCEEECCSSC
T ss_pred CEeCHHHhCCCCCCCEEECCCCC--CCeeChhhhhcCccccEEEeCCCC
Confidence 433 358899999999999987 333333467889999999999643
No 141
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.01 E-value=1.7e-09 Score=104.00 Aligned_cols=78 Identities=22% Similarity=0.277 Sum_probs=39.5
Q ss_pred cEEEecCCCCCCCCccccCCCCccEEEecCCCCcccChh-hcCCCCCcEEEccCCCCcccchh-hhcccccceeeccCcc
Q 003890 551 RILNLGSAVLVQFPPGLENLFHLKYLKLNIPSLKCLPSL-LCTLLNLQTLEMPSSYVDQSPED-IWMMQKLMHLNFGSIT 628 (788)
Q Consensus 551 ~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~lp~~-i~~L~~L~~L~L~~~~l~~lp~~-l~~L~~L~~L~l~~~~ 628 (788)
+.++++++.++.+|..+. .+|++|++++|.+..+|.. ++++++|++|++++|.+..+|.. +..+++|++|++++|.
T Consensus 10 ~~l~~~~~~l~~~p~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~ 87 (177)
T 2o6r_A 10 TEIRCNSKGLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENK 87 (177)
T ss_dssp TEEECCSSCCSSCCTTCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEecCCCCccCCCCCC--CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCC
Confidence 445555555555553332 3555555555555554432 35555555555555555555432 4555555555555544
Q ss_pred CC
Q 003890 629 LP 630 (788)
Q Consensus 629 ~~ 630 (788)
+.
T Consensus 88 l~ 89 (177)
T 2o6r_A 88 LQ 89 (177)
T ss_dssp CC
T ss_pred cc
Confidence 33
No 142
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=98.98 E-value=2.4e-08 Score=108.72 Aligned_cols=140 Identities=16% Similarity=0.024 Sum_probs=96.1
Q ss_pred CCcccchhcHHHHHHHHhcC--CCCcEEEEEEcCCCChHHHHHHHHHcccCccccc-----c-eeEEEEeCCCCChHHHH
Q 003890 185 LDISEFERGREELFDLLIEG--PSGLSVVAILNGSGFDKTAFAADTYNNNHIKFYF-----D-CLAWVRVSIAYDSGKIL 256 (788)
Q Consensus 185 ~~~vGr~~~~~~i~~~L~~~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F-----~-~~~wv~vs~~~~~~~~~ 256 (788)
..++||+.+++++.+++... ....+.+.|+|++|+||||||+.+++. ....+ . ..+|+++....+...+.
T Consensus 19 ~~~~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~--~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 96 (387)
T 2v1u_A 19 DVLPHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRR--LEARASSLGVLVKPIYVNARHRETPYRVA 96 (387)
T ss_dssp SCCTTCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHH--HHHHHHHHTCCEEEEEEETTTSCSHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHH--HHHHHhccCCCeEEEEEECCcCCCHHHHH
Confidence 67999999999999998542 234678899999999999999999983 32211 2 36788888888888999
Q ss_pred HHHHHHcCCCCCCcccccCCHHHHHHHHHHHh--cCCcEEEEEeCCCCChh----hHHHHhhhc---CCC--CCCcEEEE
Q 003890 257 DDIIKSVMPPSRVSVIIGEDYKLKKTILRDYL--TNKKYFIVLDDVFNDSD----IWDDLEQVL---PDN--QNGSRVLI 325 (788)
Q Consensus 257 ~~il~~l~~~~~~~~~~~~~~~~~~~~l~~~l--~~kr~LlVLDdvw~~~~----~~~~l~~~l---~~~--~~gskIiv 325 (788)
..++..++.... ....+..+....+.+.+ .+++.+|||||++ .-. ..+.+...+ ... ..+..+|.
T Consensus 97 ~~l~~~l~~~~~---~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~-~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~ 172 (387)
T 2v1u_A 97 SAIAEAVGVRVP---FTGLSVGEVYERLVKRLSRLRGIYIIVLDEID-FLPKRPGGQDLLYRITRINQELGDRVWVSLVG 172 (387)
T ss_dssp HHHHHHHSCCCC---SSCCCHHHHHHHHHHHHTTSCSEEEEEEETTT-HHHHSTTHHHHHHHHHHGGGCC-----CEEEE
T ss_pred HHHHHHhCCCCC---CCCCCHHHHHHHHHHHHhccCCeEEEEEccHh-hhcccCCCChHHHhHhhchhhcCCCceEEEEE
Confidence 999999866432 12344566677777777 3568999999996 321 222232222 211 34567777
Q ss_pred ecCCh
Q 003890 326 TVTDL 330 (788)
Q Consensus 326 TTR~~ 330 (788)
||+..
T Consensus 173 ~t~~~ 177 (387)
T 2v1u_A 173 ITNSL 177 (387)
T ss_dssp ECSCS
T ss_pred EECCC
Confidence 77765
No 143
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.96 E-value=8.1e-12 Score=122.82 Aligned_cols=125 Identities=18% Similarity=0.150 Sum_probs=101.5
Q ss_pred CceeEEEeecCc--ccccc--ccccccccceEEecCCCCchhhhhhhhhhhcCCccccEEEecCCCCCCCCccccCCCCc
Q 003890 498 ANVKWCYIMKDL--IEFFS--LEHSDIYLQSFLNHSSESDHLALIDCENFCEKFKHLRILNLGSAVLVQFPPGLENLFHL 573 (788)
Q Consensus 498 ~~~r~Ls~~~~~--~~~~~--~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~i~~L~~L 573 (788)
-.++...+.+.. .+..+ ... +++|+.|.+.++.... +| .+..+++|++|++++|.++.+|..+..+++|
T Consensus 23 l~l~~~~l~~~~~~l~~l~~~~~~-l~~L~~L~ls~n~l~~-----l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L 95 (198)
T 1ds9_A 23 TEAEKVELHGMIPPIEKMDATLST-LKACKHLALSTNNIEK-----IS-SLSGMENLRILSLGRNLIKKIENLDAVADTL 95 (198)
T ss_dssp TTCSEEECCBCCTTCCCCHHHHHH-TTTCSEEECSEEEESC-----CC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHC
T ss_pred cchheeEeccccCcHhhhhHHHhc-CCCCCEEECCCCCCcc-----cc-ccccCCCCCEEECCCCCcccccchhhcCCcC
Confidence 345555565432 22122 445 8899999999876532 23 7888999999999999999999888888999
Q ss_pred cEEEecCCCCcccChhhcCCCCCcEEEccCCCCcccch--hhhcccccceeeccCccCC
Q 003890 574 KYLKLNIPSLKCLPSLLCTLLNLQTLEMPSSYVDQSPE--DIWMMQKLMHLNFGSITLP 630 (788)
Q Consensus 574 ~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~lp~--~l~~L~~L~~L~l~~~~~~ 630 (788)
++|++++|.+..+| .+.++++|++|++++|.+..+|. .+..+++|++|++++|.+.
T Consensus 96 ~~L~L~~N~l~~l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~ 153 (198)
T 1ds9_A 96 EELWISYNQIASLS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLY 153 (198)
T ss_dssp SEEEEEEEECCCHH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHH
T ss_pred CEEECcCCcCCcCC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccc
Confidence 99999999999987 78999999999999999988775 6899999999999988653
No 144
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=98.94 E-value=1.5e-08 Score=108.74 Aligned_cols=135 Identities=11% Similarity=0.108 Sum_probs=89.7
Q ss_pred CCcccchhcHHHHHHHHhcCCCCcEEEEEEcCCCChHHHHHHHHHcccCcccccceeEEEEeCCCC------ChHHHHHH
Q 003890 185 LDISEFERGREELFDLLIEGPSGLSVVAILNGSGFDKTAFAADTYNNNHIKFYFDCLAWVRVSIAY------DSGKILDD 258 (788)
Q Consensus 185 ~~~vGr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~------~~~~~~~~ 258 (788)
..++||+.+++.+.+++..+ +++.|+|++|+|||||++++++.. . .+|+++.... +...+.+.
T Consensus 12 ~~~~gR~~el~~L~~~l~~~----~~v~i~G~~G~GKT~Ll~~~~~~~------~-~~~~~~~~~~~~~~~~~~~~~~~~ 80 (350)
T 2qen_A 12 EDIFDREEESRKLEESLENY----PLTLLLGIRRVGKSSLLRAFLNER------P-GILIDCRELYAERGHITREELIKE 80 (350)
T ss_dssp GGSCSCHHHHHHHHHHHHHC----SEEEEECCTTSSHHHHHHHHHHHS------S-EEEEEHHHHHHTTTCBCHHHHHHH
T ss_pred HhcCChHHHHHHHHHHHhcC----CeEEEECCCcCCHHHHHHHHHHHc------C-cEEEEeecccccccCCCHHHHHHH
Confidence 67999999999999998753 689999999999999999999842 1 6777765432 45566666
Q ss_pred HHHHcCCC--------------CCCcccccCCHHHHHHHHHHHhcC-CcEEEEEeCCCCCh---------hhHHHHhhhc
Q 003890 259 IIKSVMPP--------------SRVSVIIGEDYKLKKTILRDYLTN-KKYFIVLDDVFNDS---------DIWDDLEQVL 314 (788)
Q Consensus 259 il~~l~~~--------------~~~~~~~~~~~~~~~~~l~~~l~~-kr~LlVLDdvw~~~---------~~~~~l~~~l 314 (788)
+...+... .........+..++...+.+..+. ++++||+||++ .- ..+..+....
T Consensus 81 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~-~~~~~~~~~~~~~~~~L~~~~ 159 (350)
T 2qen_A 81 LQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQ-YLRFYGSRGGKELLALFAYAY 159 (350)
T ss_dssp HHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGG-GGGGBTTTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHH-HHhccCccchhhHHHHHHHHH
Confidence 66655420 000000124556666777666643 49999999997 32 2233333322
Q ss_pred CCCCCCcEEEEecCChHH
Q 003890 315 PDNQNGSRVLITVTDLDL 332 (788)
Q Consensus 315 ~~~~~gskIivTTR~~~v 332 (788)
.. .++.++|+|++...+
T Consensus 160 ~~-~~~~~~il~g~~~~~ 176 (350)
T 2qen_A 160 DS-LPNLKIILTGSEVGL 176 (350)
T ss_dssp HH-CTTEEEEEEESSHHH
T ss_pred Hh-cCCeEEEEECCcHHH
Confidence 22 247889999988654
No 145
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.90 E-value=3.9e-09 Score=100.65 Aligned_cols=82 Identities=20% Similarity=0.268 Sum_probs=40.9
Q ss_pred ccccEEEecCCCCCCC-CccccCCCCccEEEecCCCCcccChh-hcCCCCCcEEEccCCCCcccch-hhhcccccceeec
Q 003890 548 KHLRILNLGSAVLVQF-PPGLENLFHLKYLKLNIPSLKCLPSL-LCTLLNLQTLEMPSSYVDQSPE-DIWMMQKLMHLNF 624 (788)
Q Consensus 548 ~~L~~L~L~~~~l~~l-p~~i~~L~~L~~L~L~~~~i~~lp~~-i~~L~~L~~L~L~~~~l~~lp~-~l~~L~~L~~L~l 624 (788)
++|++|+|++|.++.+ |..|.++.+|++|+|++|.+..+|.. +.++.+|++|+|++|.+..+|. .+.++++|++|++
T Consensus 30 ~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 109 (170)
T 3g39_A 30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWL 109 (170)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEe
Confidence 4455555555555544 33345555555555555555554433 2455555555555555555544 2445555555555
Q ss_pred cCccC
Q 003890 625 GSITL 629 (788)
Q Consensus 625 ~~~~~ 629 (788)
++|.+
T Consensus 110 ~~N~~ 114 (170)
T 3g39_A 110 LNNPW 114 (170)
T ss_dssp CSSCB
T ss_pred CCCCC
Confidence 54443
No 146
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.89 E-value=4.7e-09 Score=100.50 Aligned_cols=83 Identities=18% Similarity=0.279 Sum_probs=51.5
Q ss_pred ccccEEEecCCCCCCC-CccccCCCCccEEEecCCCCcccChh-hcCCCCCcEEEccCCCCcccchh-hhcccccceeec
Q 003890 548 KHLRILNLGSAVLVQF-PPGLENLFHLKYLKLNIPSLKCLPSL-LCTLLNLQTLEMPSSYVDQSPED-IWMMQKLMHLNF 624 (788)
Q Consensus 548 ~~L~~L~L~~~~l~~l-p~~i~~L~~L~~L~L~~~~i~~lp~~-i~~L~~L~~L~L~~~~l~~lp~~-l~~L~~L~~L~l 624 (788)
++|++|+|++|.++.+ |..|.++.+|++|+|++|.+..+|.. +.++.+|++|+|++|.+..+|.. +..+++|++|++
T Consensus 33 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L 112 (174)
T 2r9u_A 33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYL 112 (174)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEe
Confidence 5566666666666654 34566666666666666666666554 35666666666666666666653 566666666666
Q ss_pred cCccCC
Q 003890 625 GSITLP 630 (788)
Q Consensus 625 ~~~~~~ 630 (788)
++|.+.
T Consensus 113 ~~N~~~ 118 (174)
T 2r9u_A 113 YNNPWD 118 (174)
T ss_dssp CSSCBC
T ss_pred CCCCcc
Confidence 666544
No 147
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.84 E-value=6.5e-08 Score=105.52 Aligned_cols=233 Identities=9% Similarity=0.024 Sum_probs=145.6
Q ss_pred ccceEEecCCCCchhhhhhhhhhhcCCccccEEEecCCCCCCCC-ccccCCCCccEEEecCCCCcccChhhcCCCCCcEE
Q 003890 521 YLQSFLNHSSESDHLALIDCENFCEKFKHLRILNLGSAVLVQFP-PGLENLFHLKYLKLNIPSLKCLPSLLCTLLNLQTL 599 (788)
Q Consensus 521 ~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp-~~i~~L~~L~~L~L~~~~i~~lp~~i~~L~~L~~L 599 (788)
+|+++.+..+-. .+...+|.+. +|+.+.+.. .+..++ ..|.++.+|+.+++..|.+..+|.......+|+.+
T Consensus 136 ~L~~i~l~~~i~-----~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l 208 (401)
T 4fdw_A 136 QIAKVVLNEGLK-----SIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFVYAGIEEV 208 (401)
T ss_dssp CCSEEECCTTCC-----EECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTTTCCCSEE
T ss_pred CccEEEeCCCcc-----EECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEeecccCEE
Confidence 566666554421 1223566664 577777775 455444 45777888888888888888887655446788888
Q ss_pred EccCCCCcccch-hhhcccccceeeccCc--cCCCCCcCCcCccccccccccccccc-cCccccCCCCCCCeEEEEccCC
Q 003890 600 EMPSSYVDQSPE-DIWMMQKLMHLNFGSI--TLPAPPKNYSSSLKNLIFISTLNPSS-CTPDILGRLPNVQTLRISGDLS 675 (788)
Q Consensus 600 ~L~~~~l~~lp~-~l~~L~~L~~L~l~~~--~~~~~i~~~~~~l~~L~~L~~~~~~~-~~~~~l~~L~~L~~L~l~~~~~ 675 (788)
.+..+ +..++. .|.++++|+.+.+..+ .++... |.+ .+|+.+.+.+.-. -....|.++++|+.+.+.++..
T Consensus 209 ~lp~~-l~~I~~~aF~~~~~L~~l~l~~~l~~I~~~a---F~~-~~L~~i~lp~~i~~I~~~aF~~c~~L~~l~l~~~~~ 283 (401)
T 4fdw_A 209 LLPVT-LKEIGSQAFLKTSQLKTIEIPENVSTIGQEA---FRE-SGITTVKLPNGVTNIASRAFYYCPELAEVTTYGSTF 283 (401)
T ss_dssp ECCTT-CCEECTTTTTTCTTCCCEECCTTCCEECTTT---TTT-CCCSEEEEETTCCEECTTTTTTCTTCCEEEEESSCC
T ss_pred EeCCc-hheehhhHhhCCCCCCEEecCCCccCccccc---ccc-CCccEEEeCCCccEEChhHhhCCCCCCEEEeCCccc
Confidence 88644 666655 5777888888887643 222221 344 5677776643211 1223477888888888877641
Q ss_pred c---ChhcHHHhccCCCCCCEEEeecCCCCCcccccccCCCccccccc--ccccccccc-CcccCCCCCcceEEEecccc
Q 003890 676 C---YHSGVSKSLCELHKLECLKLVNERKPSRMVLYEYQFPPTDMARI--LSQLIRQEF-VESEMSLPLLQLLDLEESDE 749 (788)
Q Consensus 676 ~---~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~l~~~~~L~~L--~~~l~~~~l-p~~l~~l~~L~~L~L~~~~l 749 (788)
. ...-....|.++++|+.+.|.+.-.. .....+..+.+|+.+ .+++ ..+ +..|.++ +|+.|++.+|..
T Consensus 284 ~~~~~~~I~~~aF~~c~~L~~l~l~~~i~~---I~~~aF~~c~~L~~l~lp~~l--~~I~~~aF~~~-~L~~l~l~~n~~ 357 (401)
T 4fdw_A 284 NDDPEAMIHPYCLEGCPKLARFEIPESIRI---LGQGLLGGNRKVTQLTIPANV--TQINFSAFNNT-GIKEVKVEGTTP 357 (401)
T ss_dssp CCCTTCEECTTTTTTCTTCCEECCCTTCCE---ECTTTTTTCCSCCEEEECTTC--CEECTTSSSSS-CCCEEEECCSSC
T ss_pred cCCcccEECHHHhhCCccCCeEEeCCceEE---EhhhhhcCCCCccEEEECccc--cEEcHHhCCCC-CCCEEEEcCCCC
Confidence 1 01133456778888888888743222 345567778888888 4445 444 3456667 889999988876
Q ss_pred ccccccCCcccccccc-cCCeeEeccc
Q 003890 750 EDDERSDILEILQDIN-DFVHESEEAI 775 (788)
Q Consensus 750 ~~~~~~~~l~~l~~L~-~L~~L~L~~~ 775 (788)
... .-..+.+++ ++..|.+-..
T Consensus 358 ~~l----~~~~F~~~~~~l~~l~vp~~ 380 (401)
T 4fdw_A 358 PQV----FEKVWYGFPDDITVIRVPAE 380 (401)
T ss_dssp CBC----CCSSCCCSCTTCCEEEECGG
T ss_pred ccc----ccccccCCCCCccEEEeCHH
Confidence 654 334566665 6778877653
No 148
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.80 E-value=1.3e-08 Score=97.02 Aligned_cols=100 Identities=21% Similarity=0.281 Sum_probs=75.0
Q ss_pred ccEEEecCCCCCCCCccccCCCCccEEEecCCCCccc-ChhhcCCCCCcEEEccCCCCcccchh-hhcccccceeeccCc
Q 003890 550 LRILNLGSAVLVQFPPGLENLFHLKYLKLNIPSLKCL-PSLLCTLLNLQTLEMPSSYVDQSPED-IWMMQKLMHLNFGSI 627 (788)
Q Consensus 550 L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~~l~~lp~~-l~~L~~L~~L~l~~~ 627 (788)
.+.+++++|.++.+|..+. .+|++|+|++|.+..+ |..+.++.+|++|+|++|.+..+|.. +.++++|++|++++|
T Consensus 11 ~~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 88 (170)
T 3g39_A 11 GTTVDCSGKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN 88 (170)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEEEeCCCCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence 4678888888888887663 6788888888888877 45578888888888888888777764 578888888888887
Q ss_pred cCCCCCcCCcCccccccccccccc
Q 003890 628 TLPAPPKNYSSSLKNLIFISTLNP 651 (788)
Q Consensus 628 ~~~~~i~~~~~~l~~L~~L~~~~~ 651 (788)
.+....+..|+.+++|+.|++.++
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N 112 (170)
T 3g39_A 89 QLKSIPRGAFDNLKSLTHIWLLNN 112 (170)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSS
T ss_pred ccCEeCHHHhcCCCCCCEEEeCCC
Confidence 665433344677888888877754
No 149
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.78 E-value=1.6e-08 Score=96.76 Aligned_cols=112 Identities=18% Similarity=0.157 Sum_probs=90.4
Q ss_pred eEEEeecCccccccccccccccceEEecCCCCchhhhhhhhhhhcCCccccEEEecCCCCCCCCcc-ccCCCCccEEEec
Q 003890 501 KWCYIMKDLIEFFSLEHSDIYLQSFLNHSSESDHLALIDCENFCEKFKHLRILNLGSAVLVQFPPG-LENLFHLKYLKLN 579 (788)
Q Consensus 501 r~Ls~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~-i~~L~~L~~L~L~ 579 (788)
+.+.+.++....++..- .++|+.|.+.++... .+++..|.++++|++|+|++|.++.+|.. +.++.+|++|+|+
T Consensus 15 ~~l~~~~n~l~~iP~~~-~~~L~~L~Ls~N~l~----~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~ 89 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGI-PTDKQRLWLNNNQIT----KLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLN 89 (174)
T ss_dssp SEEECCSSCCSSCCSCC-CTTCSEEECCSSCCC----CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred cEEEeCCCCCCccCCCc-CCCCcEEEeCCCCcc----ccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECC
Confidence 45666666555444334 678999999998863 23457899999999999999999998876 5899999999999
Q ss_pred CCCCcccChh-hcCCCCCcEEEccCCCCcccchhhhccc
Q 003890 580 IPSLKCLPSL-LCTLLNLQTLEMPSSYVDQSPEDIWMMQ 617 (788)
Q Consensus 580 ~~~i~~lp~~-i~~L~~L~~L~L~~~~l~~lp~~l~~L~ 617 (788)
+|.+..+|.. +.++.+|++|+|++|.+...|..+..+.
T Consensus 90 ~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~~~~~l~ 128 (174)
T 2r9u_A 90 DNHLKSIPRGAFDNLKSLTHIYLYNNPWDCECRDIMYLR 128 (174)
T ss_dssp SSCCCCCCTTTTTTCTTCSEEECCSSCBCTTBGGGHHHH
T ss_pred CCccceeCHHHhccccCCCEEEeCCCCcccccccHHHHH
Confidence 9999999876 8999999999999998887776444443
No 150
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=98.76 E-value=2.3e-08 Score=108.83 Aligned_cols=140 Identities=17% Similarity=0.018 Sum_probs=96.9
Q ss_pred CCcccchhcHHHHHHHHhc--CCCCcEEEEEEcCCCChHHHHHHHHHcccCcccc--------cceeEEEEeCCCC-ChH
Q 003890 185 LDISEFERGREELFDLLIE--GPSGLSVVAILNGSGFDKTAFAADTYNNNHIKFY--------FDCLAWVRVSIAY-DSG 253 (788)
Q Consensus 185 ~~~vGr~~~~~~i~~~L~~--~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~--------F~~~~wv~vs~~~-~~~ 253 (788)
.+++||+.+++++.+++.. .....+.+.|+|++|+||||||+.+++. .... ....+|++++... +..
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~--~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 97 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNE--IEEVKKEDEEYKDVKQAYVNCREVGGTPQ 97 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHH--HHHHHHHSSSSTTCEEEEEEHHHHCSCHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHH--HHHHhhhhcCCCCceEEEEECccCCCCHH
Confidence 6799999999999988864 2334668999999999999999999983 3221 2247788877766 788
Q ss_pred HHHHHHHHHcCCCCCCcccccCCHHHHHHHHHHHhcCCcEEEEEeCCCCChh---hHHH-HhhhcCCCCCCcEEEEecCC
Q 003890 254 KILDDIIKSVMPPSRVSVIIGEDYKLKKTILRDYLTNKKYFIVLDDVFNDSD---IWDD-LEQVLPDNQNGSRVLITVTD 329 (788)
Q Consensus 254 ~~~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVLDdvw~~~~---~~~~-l~~~l~~~~~gskIivTTR~ 329 (788)
.+...++.++..... .....+.......+.+.+..++.+|||||++ .-. ..+. +...+... .+..||+||+.
T Consensus 98 ~~~~~l~~~l~~~~~--~~~~~~~~~~~~~l~~~l~~~~~vlilDEi~-~l~~~~~~~~~l~~l~~~~-~~~~iI~~t~~ 173 (384)
T 2qby_B 98 AVLSSLAGKLTGFSV--PKHGINLGEYIDKIKNGTRNIRAIIYLDEVD-TLVKRRGGDIVLYQLLRSD-ANISVIMISND 173 (384)
T ss_dssp HHHHHHHHHHHCSCC--CSSSSCTHHHHHHHHHHHSSSCEEEEEETTH-HHHHSTTSHHHHHHHHTSS-SCEEEEEECSS
T ss_pred HHHHHHHHHhcCCCC--CCCCCCHHHHHHHHHHHhccCCCEEEEECHH-HhccCCCCceeHHHHhcCC-cceEEEEEECC
Confidence 888888888732211 0123345667778888888777799999996 321 1222 22222222 67889999886
Q ss_pred h
Q 003890 330 L 330 (788)
Q Consensus 330 ~ 330 (788)
.
T Consensus 174 ~ 174 (384)
T 2qby_B 174 I 174 (384)
T ss_dssp T
T ss_pred C
Confidence 5
No 151
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=98.69 E-value=1.4e-08 Score=110.35 Aligned_cols=142 Identities=15% Similarity=0.143 Sum_probs=96.8
Q ss_pred CCcccchhcHHHHHHHHhcC--CCCcEEEEEEcCCCChHHHHHHHHHcccCccccc---ceeEEEEeCCCCChHHHHHHH
Q 003890 185 LDISEFERGREELFDLLIEG--PSGLSVVAILNGSGFDKTAFAADTYNNNHIKFYF---DCLAWVRVSIAYDSGKILDDI 259 (788)
Q Consensus 185 ~~~vGr~~~~~~i~~~L~~~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F---~~~~wv~vs~~~~~~~~~~~i 259 (788)
..++||+.+++.+.+++... ......+.|+|++|+||||||+.+++ .....| ...+|+.+....+...+...+
T Consensus 20 ~~~~gr~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~--~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i 97 (386)
T 2qby_A 20 DELPHREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLS--KLHKKFLGKFKHVYINTRQIDTPYRVLADL 97 (386)
T ss_dssp SCCTTCHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHH--HHHHHTCSSCEEEEEEHHHHCSHHHHHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHH--HHHHHhcCCceEEEEECCCCCCHHHHHHHH
Confidence 67999999999999988742 23467889999999999999999998 344333 236778777766777888888
Q ss_pred HHHcCCCCCCcccccCCHHHHHHHHHHHhc--CCcEEEEEeCCCC-----ChhhHHHHhhhcCC-CCCCcEEEEecCChH
Q 003890 260 IKSVMPPSRVSVIIGEDYKLKKTILRDYLT--NKKYFIVLDDVFN-----DSDIWDDLEQVLPD-NQNGSRVLITVTDLD 331 (788)
Q Consensus 260 l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~--~kr~LlVLDdvw~-----~~~~~~~l~~~l~~-~~~gskIivTTR~~~ 331 (788)
+..++..... ...+..+....+.+.+. +++.+||+|+++. +...+..+...+.. ...+..+|+||+...
T Consensus 98 ~~~l~~~~~~---~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~~ 174 (386)
T 2qby_A 98 LESLDVKVPF---TGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDVK 174 (386)
T ss_dssp TTTTSCCCCS---SSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESCGG
T ss_pred HHHhCCCCCC---CCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECCCC
Confidence 8877544321 23345666666666664 4589999999962 13344444443322 233566788887654
No 152
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.64 E-value=4.7e-07 Score=98.69 Aligned_cols=234 Identities=9% Similarity=0.034 Sum_probs=163.1
Q ss_pred ccccceEEecCCCCchhhhhhhhhhhcCCccccEEEecCCCCCCCCc-cccCCCCccEEEecCCCCcccC-hhhcCCCCC
Q 003890 519 DIYLQSFLNHSSESDHLALIDCENFCEKFKHLRILNLGSAVLVQFPP-GLENLFHLKYLKLNIPSLKCLP-SLLCTLLNL 596 (788)
Q Consensus 519 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~-~i~~L~~L~~L~L~~~~i~~lp-~~i~~L~~L 596 (788)
+..+.++.+-+.-. .+.+..|.+. +|+.+.+..+ ++.++. .|.+ .+|+.+.+.. .+..++ ..+.++.+|
T Consensus 112 ~~~l~~i~ip~~i~-----~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L 182 (401)
T 4fdw_A 112 LKGYNEIILPNSVK-----SIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYNL 182 (401)
T ss_dssp CSSCSEEECCTTCC-----EECTTTTTTC-CCSEEECCTT-CCEECTTTTTT-CCCCEEECCT-TCCEECSSTTTTCTTC
T ss_pred cCCccEEEECCccC-----EehHhhcccC-CccEEEeCCC-ccEECHHhcCC-CCceEEEeCC-CccEehHHHhhCcccC
Confidence 45566665544332 2334778775 7999999876 666554 4555 4799999986 677775 468999999
Q ss_pred cEEEccCCCCcccchhhhcccccceeeccCc--cCCCCCcCCcCcccccccccccccccc-CccccCCCCCCCeEEEEcc
Q 003890 597 QTLEMPSSYVDQSPEDIWMMQKLMHLNFGSI--TLPAPPKNYSSSLKNLIFISTLNPSSC-TPDILGRLPNVQTLRISGD 673 (788)
Q Consensus 597 ~~L~L~~~~l~~lp~~l~~L~~L~~L~l~~~--~~~~~i~~~~~~l~~L~~L~~~~~~~~-~~~~l~~L~~L~~L~l~~~ 673 (788)
+.+++.+|.+..+|.......+|+.+.+..+ .++. ..|.++++|+.+.+.+.-.. ....|.+ .+|+.+.+.+.
T Consensus 183 ~~l~l~~n~l~~I~~~aF~~~~L~~l~lp~~l~~I~~---~aF~~~~~L~~l~l~~~l~~I~~~aF~~-~~L~~i~lp~~ 258 (401)
T 4fdw_A 183 KKADLSKTKITKLPASTFVYAGIEEVLLPVTLKEIGS---QAFLKTSQLKTIEIPENVSTIGQEAFRE-SGITTVKLPNG 258 (401)
T ss_dssp CEEECTTSCCSEECTTTTTTCCCSEEECCTTCCEECT---TTTTTCTTCCCEECCTTCCEECTTTTTT-CCCSEEEEETT
T ss_pred CeeecCCCcceEechhhEeecccCEEEeCCchheehh---hHhhCCCCCCEEecCCCccCcccccccc-CCccEEEeCCC
Confidence 9999999999999986444689999998744 2232 23588899999987642211 1223455 68999999553
Q ss_pred CCcChhcHHHhccCCCCCCEEEeecCCCC---CcccccccCCCccccccc--cccccccccC-cccCCCCCcceEEEecc
Q 003890 674 LSCYHSGVSKSLCELHKLECLKLVNERKP---SRMVLYEYQFPPTDMARI--LSQLIRQEFV-ESEMSLPLLQLLDLEES 747 (788)
Q Consensus 674 ~~~~~~~~~~~l~~l~~L~~L~L~~~~~~---~~~~~~~~l~~~~~L~~L--~~~l~~~~lp-~~l~~l~~L~~L~L~~~ 747 (788)
...--..+|.++++|+.+.+.++... ........+..+++|+.+ .+.+ ..++ ..|..+++|+.|.|..+
T Consensus 259 ---i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~~i--~~I~~~aF~~c~~L~~l~lp~~ 333 (401)
T 4fdw_A 259 ---VTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPESI--RILGQGLLGGNRKVTQLTIPAN 333 (401)
T ss_dssp ---CCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCTTC--CEECTTTTTTCCSCCEEEECTT
T ss_pred ---ccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCCce--EEEhhhhhcCCCCccEEEECcc
Confidence 22333567889999999999854321 001345677889999999 4456 5554 45677899999999665
Q ss_pred ccccccccCCcccccccccCCeeEecccC
Q 003890 748 DEEDDERSDILEILQDINDFVHESEEAID 776 (788)
Q Consensus 748 ~l~~~~~~~~l~~l~~L~~L~~L~L~~~~ 776 (788)
+... ....|.++ +|+.|++.++.
T Consensus 334 -l~~I----~~~aF~~~-~L~~l~l~~n~ 356 (401)
T 4fdw_A 334 -VTQI----NFSAFNNT-GIKEVKVEGTT 356 (401)
T ss_dssp -CCEE----CTTSSSSS-CCCEEEECCSS
T ss_pred -ccEE----cHHhCCCC-CCCEEEEcCCC
Confidence 5544 45568888 99999998864
No 153
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=98.63 E-value=6.3e-08 Score=96.27 Aligned_cols=124 Identities=11% Similarity=0.020 Sum_probs=77.8
Q ss_pred CCCcccchhcHHHHHHHHhcCCCCcEEEEEEcCCCChHHHHHHHHHcccCcccc-cce-eEEEEeCCCCChHHHHHHHHH
Q 003890 184 RLDISEFERGREELFDLLIEGPSGLSVVAILNGSGFDKTAFAADTYNNNHIKFY-FDC-LAWVRVSIAYDSGKILDDIIK 261 (788)
Q Consensus 184 ~~~~vGr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-F~~-~~wv~vs~~~~~~~~~~~il~ 261 (788)
+.+++|++..++.+.+++.... ...+.|+|.+|+|||++|+.+++. .... +.. .+.+..+.......+...+..
T Consensus 16 ~~~~~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKT~l~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (226)
T 2chg_A 16 LDEVVGQDEVIQRLKGYVERKN--IPHLLFSGPPGTGKTATAIALARD--LFGENWRDNFIEMNASDERGIDVVRHKIKE 91 (226)
T ss_dssp GGGCCSCHHHHHHHHHHHHTTC--CCCEEEECSTTSSHHHHHHHHHHH--HHGGGGGGGEEEEETTCTTCHHHHHHHHHH
T ss_pred HHHHcCcHHHHHHHHHHHhCCC--CCeEEEECCCCCCHHHHHHHHHHH--HhccccccceEEeccccccChHHHHHHHHH
Confidence 3779999999999999998754 334889999999999999999873 3222 222 333343333332222221111
Q ss_pred HcCCCCCCcccccCCHHHHHHHHHHHhcCCcEEEEEeCCCC-ChhhHHHHhhhcCCCCCCcEEEEecCCh
Q 003890 262 SVMPPSRVSVIIGEDYKLKKTILRDYLTNKKYFIVLDDVFN-DSDIWDDLEQVLPDNQNGSRVLITVTDL 330 (788)
Q Consensus 262 ~l~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVLDdvw~-~~~~~~~l~~~l~~~~~gskIivTTR~~ 330 (788)
...... .-.+++.+||+||++. ....++.+...+.....+.++|+||+..
T Consensus 92 ~~~~~~-------------------~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~ 142 (226)
T 2chg_A 92 FARTAP-------------------IGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYV 142 (226)
T ss_dssp HHTSCC-------------------STTCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCG
T ss_pred HhcccC-------------------CCccCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCCh
Confidence 111000 0125789999999962 3355566666665555678899988764
No 154
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=98.63 E-value=1.1e-07 Score=95.97 Aligned_cols=139 Identities=14% Similarity=0.037 Sum_probs=77.9
Q ss_pred CCCCcccchhcHHHHHHHHhcCCCCcEEEEEEcCCCChHHHHHHHHHcccCcccccceeEEEEeCCCCChHHHHHHHHHH
Q 003890 183 PRLDISEFERGREELFDLLIEGPSGLSVVAILNGSGFDKTAFAADTYNNNHIKFYFDCLAWVRVSIAYDSGKILDDIIKS 262 (788)
Q Consensus 183 ~~~~~vGr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~~ 262 (788)
.+.+++||+..++.+.+++..+. ..+.+.|+|++|+||||||+.+++. ....+....+ ...... ....+...
T Consensus 21 ~~~~~~g~~~~~~~l~~~l~~~~-~~~~~ll~G~~G~GKT~l~~~~~~~--~~~~~~~~~~----~~~~~~-~~~~~~~~ 92 (250)
T 1njg_A 21 TFADVVGQEHVLTALANGLSLGR-IHHAYLFSGTRGVGKTSIARLLAKG--LNCETGITAT----PCGVCD-NCREIEQG 92 (250)
T ss_dssp SGGGCCSCHHHHHHHHHHHHHTC-CCSEEEEECSTTSCHHHHHHHHHHH--HHCTTCSCSS----CCSCSH-HHHHHHTT
T ss_pred cHHHHhCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHH--hcCCCCCCCC----CCcccH-HHHHHhcc
Confidence 34779999999999999997654 2358889999999999999999874 2221110000 000000 00011100
Q ss_pred cCCCCCC-cccccCCHHHHHHHHHHHh-----cCCcEEEEEeCCCC-ChhhHHHHhhhcCCCCCCcEEEEecCCh
Q 003890 263 VMPPSRV-SVIIGEDYKLKKTILRDYL-----TNKKYFIVLDDVFN-DSDIWDDLEQVLPDNQNGSRVLITVTDL 330 (788)
Q Consensus 263 l~~~~~~-~~~~~~~~~~~~~~l~~~l-----~~kr~LlVLDdvw~-~~~~~~~l~~~l~~~~~gskIivTTR~~ 330 (788)
....... ........+... .+.+.+ .+++.+||+||++. +...++.+...+.....+..+|+||+..
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~t~~~ 166 (250)
T 1njg_A 93 RFVDLIEIDAASRTKVEDTR-DLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDP 166 (250)
T ss_dssp CCSSEEEEETTCGGGHHHHH-HHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESCG
T ss_pred CCcceEEecCcccccHHHHH-HHHHHhhhchhcCCceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEEeCCh
Confidence 0000000 000001111121 122221 35789999999962 4567777777776656678899988764
No 155
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=98.56 E-value=1e-07 Score=102.34 Aligned_cols=136 Identities=13% Similarity=0.061 Sum_probs=82.6
Q ss_pred CCcccchhcHHHHHHHHhcCCCCcEEEEEEcCCCChHHHHHHHHHcccCcccccceeEEEEeCCC-----CChHHHHHHH
Q 003890 185 LDISEFERGREELFDLLIEGPSGLSVVAILNGSGFDKTAFAADTYNNNHIKFYFDCLAWVRVSIA-----YDSGKILDDI 259 (788)
Q Consensus 185 ~~~vGr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~-----~~~~~~~~~i 259 (788)
..++||+.+++.+.+ +.. +++.|+|++|+|||||++++.+. ... ..+|+++... .+.......+
T Consensus 13 ~~~~gR~~el~~L~~-l~~-----~~v~i~G~~G~GKT~L~~~~~~~--~~~---~~~~~~~~~~~~~~~~~~~~~~~~l 81 (357)
T 2fna_A 13 KDFFDREKEIEKLKG-LRA-----PITLVLGLRRTGKSSIIKIGINE--LNL---PYIYLDLRKFEERNYISYKDFLLEL 81 (357)
T ss_dssp GGSCCCHHHHHHHHH-TCS-----SEEEEEESTTSSHHHHHHHHHHH--HTC---CEEEEEGGGGTTCSCCCHHHHHHHH
T ss_pred HHhcChHHHHHHHHH-hcC-----CcEEEECCCCCCHHHHHHHHHHh--cCC---CEEEEEchhhccccCCCHHHHHHHH
Confidence 679999999999999 643 59999999999999999999984 322 2578877642 2334444444
Q ss_pred HHHcC-------------CCC-----C--Cccc-----ccCCHHHHHHHHHHHhcCCcEEEEEeCCCC-C---hhhHHHH
Q 003890 260 IKSVM-------------PPS-----R--VSVI-----IGEDYKLKKTILRDYLTNKKYFIVLDDVFN-D---SDIWDDL 310 (788)
Q Consensus 260 l~~l~-------------~~~-----~--~~~~-----~~~~~~~~~~~l~~~l~~kr~LlVLDdvw~-~---~~~~~~l 310 (788)
...+. ... . .... .......+...+.+.-+ ++++||+||++. + ..+|..+
T Consensus 82 ~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~vlvlDe~~~~~~~~~~~~~~~ 160 (357)
T 2fna_A 82 QKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASK-DNVIIVLDEAQELVKLRGVNLLPA 160 (357)
T ss_dssp HHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCS-SCEEEEEETGGGGGGCTTCCCHHH
T ss_pred HHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCC-CCeEEEEECHHHhhccCchhHHHH
Confidence 33221 000 0 0000 12344555555555433 499999999962 1 2233333
Q ss_pred hhhcCCCCCCcEEEEecCChHH
Q 003890 311 EQVLPDNQNGSRVLITVTDLDL 332 (788)
Q Consensus 311 ~~~l~~~~~gskIivTTR~~~v 332 (788)
...+....++.++|+|+|....
T Consensus 161 l~~~~~~~~~~~~i~~g~~~~~ 182 (357)
T 2fna_A 161 LAYAYDNLKRIKFIMSGSEMGL 182 (357)
T ss_dssp HHHHHHHCTTEEEEEEESSHHH
T ss_pred HHHHHHcCCCeEEEEEcCchHH
Confidence 3222222246789999998764
No 156
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.56 E-value=1.1e-08 Score=110.62 Aligned_cols=110 Identities=15% Similarity=0.031 Sum_probs=46.0
Q ss_pred ccccceEEecCCCCchhhhhhhhhhhcC-CccccEEEecCCCCCC-CCccc-cCCCCccEEEecCCCCcccC-hh----h
Q 003890 519 DIYLQSFLNHSSESDHLALIDCENFCEK-FKHLRILNLGSAVLVQ-FPPGL-ENLFHLKYLKLNIPSLKCLP-SL----L 590 (788)
Q Consensus 519 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~~-l~~L~~L~L~~~~l~~-lp~~i-~~L~~L~~L~L~~~~i~~lp-~~----i 590 (788)
.++|+.|.+.++.........+...+.. .++|+.|+|++|.++. ....+ ..+.+|++|+|++|.+...+ .. +
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 3445555555555432222222223322 2455555555555541 11111 22345555555555554221 11 1
Q ss_pred -cCCCCCcEEEccCCCCcc-----cchhhhcccccceeeccCcc
Q 003890 591 -CTLLNLQTLEMPSSYVDQ-----SPEDIWMMQKLMHLNFGSIT 628 (788)
Q Consensus 591 -~~L~~L~~L~L~~~~l~~-----lp~~l~~L~~L~~L~l~~~~ 628 (788)
...++|++|+|++|.+.. ++..+..+++|++|++++|.
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~ 194 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTG 194 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSS
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCC
Confidence 123455555555554432 22233444455555554443
No 157
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.55 E-value=1.5e-07 Score=100.90 Aligned_cols=91 Identities=14% Similarity=0.104 Sum_probs=77.1
Q ss_pred hhhhhcCCccccEEEecC-CCCCCCC-ccccCCCCccEEEecCCCCcccCh-hhcCCCCCcEEEccCCCCcccchhhhcc
Q 003890 540 CENFCEKFKHLRILNLGS-AVLVQFP-PGLENLFHLKYLKLNIPSLKCLPS-LLCTLLNLQTLEMPSSYVDQSPEDIWMM 616 (788)
Q Consensus 540 ~~~~~~~l~~L~~L~L~~-~~l~~lp-~~i~~L~~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~l~~lp~~l~~L 616 (788)
+|. +..+++|+.|+|++ |.++.+| ..|++|.+|++|+|++|.|..+|+ .|.+|.+|+.|+|++|.+..+|..+...
T Consensus 24 ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~ 102 (347)
T 2ifg_A 24 LHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQG 102 (347)
T ss_dssp TTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCS
T ss_pred cCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHccc
Confidence 345 88999999999996 9999777 568999999999999999998865 6799999999999999999998764444
Q ss_pred cccceeeccCccCCC
Q 003890 617 QKLMHLNFGSITLPA 631 (788)
Q Consensus 617 ~~L~~L~l~~~~~~~ 631 (788)
.+|+.|++.+|.+..
T Consensus 103 ~~L~~l~l~~N~~~c 117 (347)
T 2ifg_A 103 LSLQELVLSGNPLHC 117 (347)
T ss_dssp CCCCEEECCSSCCCC
T ss_pred CCceEEEeeCCCccC
Confidence 449999999887653
No 158
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.52 E-value=4e-07 Score=96.70 Aligned_cols=195 Identities=10% Similarity=0.047 Sum_probs=115.7
Q ss_pred hhhhhcC--------CccccEEEecCCCCCCCCc-cccCCCCccEEEecCCCCcccCh-hhcCCCCCcEEEccCC----C
Q 003890 540 CENFCEK--------FKHLRILNLGSAVLVQFPP-GLENLFHLKYLKLNIPSLKCLPS-LLCTLLNLQTLEMPSS----Y 605 (788)
Q Consensus 540 ~~~~~~~--------l~~L~~L~L~~~~l~~lp~-~i~~L~~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~----~ 605 (788)
++..|.+ +++|+.|+|.+ .++.++. .|.++.+|+.|++..|.+..++. .+.++.++..+.+..+ .
T Consensus 85 ~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~ 163 (329)
T 3sb4_A 85 PAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRF 163 (329)
T ss_dssp CTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHT
T ss_pred CHHHhcccccccccccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhc
Confidence 4477777 99999999999 7887764 58889999999999998887754 4677777777766542 1
Q ss_pred Ccccch-hhhcccccc--------------------------eeeccCccCCCCCcCCcCccccccccccccccccCcc-
Q 003890 606 VDQSPE-DIWMMQKLM--------------------------HLNFGSITLPAPPKNYSSSLKNLIFISTLNPSSCTPD- 657 (788)
Q Consensus 606 l~~lp~-~l~~L~~L~--------------------------~L~l~~~~~~~~i~~~~~~l~~L~~L~~~~~~~~~~~- 657 (788)
...+.. .+.++.+|+ .+.+.+.-....+......+++|+.|++.++....++
T Consensus 164 ~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~ 243 (329)
T 3sb4_A 164 KNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPD 243 (329)
T ss_dssp STTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECT
T ss_pred cccccccccccccccceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecH
Confidence 111111 122233332 2222211000000000012566777776654333332
Q ss_pred -ccCCCCCCCeEEEEccCCcChhcHHHhccCCCCCC-EEEeecCCCCCcccccccCCCccccccc---cccccccccCc-
Q 003890 658 -ILGRLPNVQTLRISGDLSCYHSGVSKSLCELHKLE-CLKLVNERKPSRMVLYEYQFPPTDMARI---LSQLIRQEFVE- 731 (788)
Q Consensus 658 -~l~~L~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~-~L~L~~~~~~~~~~~~~~l~~~~~L~~L---~~~l~~~~lp~- 731 (788)
.|.++++|+.|.+.++- ..--..+|.++++|+ .|.+.+.-.. .....+..+++|+.| .+.+ ..++.
T Consensus 244 ~aF~~~~~L~~l~l~~ni---~~I~~~aF~~~~~L~~~l~l~~~l~~---I~~~aF~~c~~L~~l~l~~n~i--~~I~~~ 315 (329)
T 3sb4_A 244 FTFAQKKYLLKIKLPHNL---KTIGQRVFSNCGRLAGTLELPASVTA---IEFGAFMGCDNLRYVLATGDKI--TTLGDE 315 (329)
T ss_dssp TTTTTCTTCCEEECCTTC---CEECTTTTTTCTTCCEEEEECTTCCE---ECTTTTTTCTTEEEEEECSSCC--CEECTT
T ss_pred hhhhCCCCCCEEECCccc---ceehHHHhhCChhccEEEEEcccceE---EchhhhhCCccCCEEEeCCCcc--Cccchh
Confidence 36777788888776642 223345677788888 8888752222 345667778888888 3555 55543
Q ss_pred ccCCCCCcceEE
Q 003890 732 SEMSLPLLQLLD 743 (788)
Q Consensus 732 ~l~~l~~L~~L~ 743 (788)
.|.++++|+.|+
T Consensus 316 aF~~~~~L~~ly 327 (329)
T 3sb4_A 316 LFGNGVPSKLIY 327 (329)
T ss_dssp TTCTTCCCCEEE
T ss_pred hhcCCcchhhhc
Confidence 566788888875
No 159
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.51 E-value=1.5e-07 Score=100.85 Aligned_cols=91 Identities=18% Similarity=0.039 Sum_probs=71.2
Q ss_pred ccccccccceEEecC-CCCchhhhhhhhhhhcCCccccEEEecCCCCCCCC-ccccCCCCccEEEecCCCCcccChhhcC
Q 003890 515 LEHSDIYLQSFLNHS-SESDHLALIDCENFCEKFKHLRILNLGSAVLVQFP-PGLENLFHLKYLKLNIPSLKCLPSLLCT 592 (788)
Q Consensus 515 ~~~~~~~Lr~L~l~~-~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp-~~i~~L~~L~~L~L~~~~i~~lp~~i~~ 592 (788)
... +++|+.|.+.+ +.. ..+++..|..+++|+.|+|++|.|+.+| ..|.+|.+|++|+|++|.+..+|..+..
T Consensus 27 l~~-~~~L~~L~l~~~n~l----~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~ 101 (347)
T 2ifg_A 27 LPG-AENLTELYIENQQHL----QHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQ 101 (347)
T ss_dssp SCS-CSCCSEEECCSCSSC----CEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTC
T ss_pred CCC-CCCeeEEEccCCCCC----CCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcc
Confidence 344 77899999986 665 2234578899999999999999998665 4678999999999999999999876544
Q ss_pred CCCCcEEEccCCCCcccc
Q 003890 593 LLNLQTLEMPSSYVDQSP 610 (788)
Q Consensus 593 L~~L~~L~L~~~~l~~lp 610 (788)
...|+.|+|.+|.+....
T Consensus 102 ~~~L~~l~l~~N~~~c~c 119 (347)
T 2ifg_A 102 GLSLQELVLSGNPLHCSC 119 (347)
T ss_dssp SCCCCEEECCSSCCCCCG
T ss_pred cCCceEEEeeCCCccCCC
Confidence 444999999999766443
No 160
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.40 E-value=3.3e-07 Score=96.97 Aligned_cols=127 Identities=15% Similarity=0.102 Sum_probs=78.2
Q ss_pred CCCCCCcccchhcHHHHHHHHhcCCCCcEEEEEEcCCCChHHHHHHHHHcccCccc-ccce-eEEEEeCCCCChHHHHHH
Q 003890 181 GQPRLDISEFERGREELFDLLIEGPSGLSVVAILNGSGFDKTAFAADTYNNNHIKF-YFDC-LAWVRVSIAYDSGKILDD 258 (788)
Q Consensus 181 ~~~~~~~vGr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-~F~~-~~wv~vs~~~~~~~~~~~ 258 (788)
+..+.+++|++..++.+.+++..+. .+.+.++|++|+||||+|+.+++. ... .+.. .++++.+....... .++
T Consensus 17 p~~~~~~~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKt~la~~l~~~--l~~~~~~~~~~~~~~~~~~~~~~-i~~ 91 (323)
T 1sxj_B 17 PQVLSDIVGNKETIDRLQQIAKDGN--MPHMIISGMPGIGKTTSVHCLAHE--LLGRSYADGVLELNASDDRGIDV-VRN 91 (323)
T ss_dssp CSSGGGCCSCTHHHHHHHHHHHSCC--CCCEEEECSTTSSHHHHHHHHHHH--HHGGGHHHHEEEECTTSCCSHHH-HHT
T ss_pred CCCHHHHHCCHHHHHHHHHHHHcCC--CCeEEEECcCCCCHHHHHHHHHHH--hcCCcccCCEEEecCccccChHH-HHH
Confidence 3334789999999999999998764 333889999999999999999983 322 1221 44444333222221 122
Q ss_pred HHHHcCCCCCCcccccCCHHHHHHHHHHHh-cCCcEEEEEeCCCC-ChhhHHHHhhhcCCCCCCcEEEEecCCh
Q 003890 259 IIKSVMPPSRVSVIIGEDYKLKKTILRDYL-TNKKYFIVLDDVFN-DSDIWDDLEQVLPDNQNGSRVLITVTDL 330 (788)
Q Consensus 259 il~~l~~~~~~~~~~~~~~~~~~~~l~~~l-~~kr~LlVLDdvw~-~~~~~~~l~~~l~~~~~gskIivTTR~~ 330 (788)
++..+.... ..+ .+++.++|+||++. ....++.+...+.....++.+|+||+..
T Consensus 92 ~~~~~~~~~------------------~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~ 147 (323)
T 1sxj_B 92 QIKHFAQKK------------------LHLPPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQS 147 (323)
T ss_dssp HHHHHHHBC------------------CCCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCG
T ss_pred HHHHHHhcc------------------ccCCCCCceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCCh
Confidence 222211000 011 35689999999962 2445555655555445678888888763
No 161
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.39 E-value=5.3e-07 Score=96.56 Aligned_cols=191 Identities=18% Similarity=0.138 Sum_probs=105.0
Q ss_pred hhhcCCccccEEEecCCCCC----------CCCccccCCCCccEEEecCCCCcccChhhcCCCCCcEEEccCCCCcccc-
Q 003890 542 NFCEKFKHLRILNLGSAVLV----------QFPPGLENLFHLKYLKLNIPSLKCLPSLLCTLLNLQTLEMPSSYVDQSP- 610 (788)
Q Consensus 542 ~~~~~l~~L~~L~L~~~~l~----------~lp~~i~~L~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~l~~lp- 610 (788)
.....+++|+.|.+...... .++..+..+++|+.|+|+++.-..+|. + .+.+|++|+|..|.+..-.
T Consensus 133 ~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~l~~-~-~~~~L~~L~L~~~~l~~~~l 210 (362)
T 2ra8_A 133 ENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGK-K-PRPNLKSLEIISGGLPDSVV 210 (362)
T ss_dssp TTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCBCCS-C-BCTTCSEEEEECSBCCHHHH
T ss_pred HhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCceecc-c-cCCCCcEEEEecCCCChHHH
Confidence 34556777888877654321 233344566788888887763224443 3 3778888888777543221
Q ss_pred hhhh--cccccceeeccCc-cCCCCCcCCcCccccccccccccccccCccccCCCCCCCeEEEEccCCcChhcHHHhc--
Q 003890 611 EDIW--MMQKLMHLNFGSI-TLPAPPKNYSSSLKNLIFISTLNPSSCTPDILGRLPNVQTLRISGDLSCYHSGVSKSL-- 685 (788)
Q Consensus 611 ~~l~--~L~~L~~L~l~~~-~~~~~i~~~~~~l~~L~~L~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~l-- 685 (788)
..+. .+++|++|+|+.+ ....+- .....+..+ + .-..+++|+.|++.+|. ........+
T Consensus 211 ~~l~~~~lp~L~~L~L~~~~~~~~~~----~~~~~l~~~---------l-~~~~~p~Lr~L~L~~~~--i~~~~~~~la~ 274 (362)
T 2ra8_A 211 EDILGSDLPNLEKLVLYVGVEDYGFD----GDMNVFRPL---------F-SKDRFPNLKWLGIVDAE--EQNVVVEMFLE 274 (362)
T ss_dssp HHHHHSBCTTCCEEEEECBCGGGTCC----SCGGGTGGG---------S-CTTTCTTCCEEEEESCT--THHHHHHHHHH
T ss_pred HHHHHccCCCCcEEEEeccccccccc----hhHHHHHHH---------H-hcCCCCCcCEEeCCCCC--CchHHHHHHHh
Confidence 1233 6788888887522 111111 111222111 0 11357899999999887 332222222
Q ss_pred -cCCCCCCEEEeecCCCCCcccccccCCCccccccccccccccccCcccCCCCCcceEEEeccccccccccCCcccccc-
Q 003890 686 -CELHKLECLKLVNERKPSRMVLYEYQFPPTDMARILSQLIRQEFVESEMSLPLLQLLDLEESDEEDDERSDILEILQD- 763 (788)
Q Consensus 686 -~~l~~L~~L~L~~~~~~~~~~~~~~l~~~~~L~~L~~~l~~~~lp~~l~~l~~L~~L~L~~~~l~~~~~~~~l~~l~~- 763 (788)
..+++|+.|+|+.+... .... ..++..+..+++|+.|+|++|.+.+. ....+..
T Consensus 275 a~~~~~L~~LdLs~n~L~------------------d~G~--~~L~~~L~~l~~L~~L~L~~n~i~d~----~~~~l~~a 330 (362)
T 2ra8_A 275 SDILPQLETMDISAGVLT------------------DEGA--RLLLDHVDKIKHLKFINMKYNYLSDE----MKKELQKS 330 (362)
T ss_dssp CSSGGGCSEEECCSSCCB------------------HHHH--HHHHTTHHHHTTCSEEECCSBBCCHH----HHHHHHHH
T ss_pred CccCCCCCEEECCCCCCC------------------hHHH--HHHHhhcccCCcceEEECCCCcCCHH----HHHHHHHH
Confidence 35788999999853322 0001 22333344567888888888887754 3443433
Q ss_pred cccCCeeEecccC
Q 003890 764 INDFVHESEEAID 776 (788)
Q Consensus 764 L~~L~~L~L~~~~ 776 (788)
+ ...+++++.+
T Consensus 331 l--g~~~~~~~~~ 341 (362)
T 2ra8_A 331 L--PMKIDVSDSQ 341 (362)
T ss_dssp C--CSEEECCSBC
T ss_pred c--CCEEEecCCc
Confidence 2 3456666554
No 162
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=98.26 E-value=8.3e-07 Score=93.99 Aligned_cols=133 Identities=14% Similarity=0.030 Sum_probs=79.9
Q ss_pred ccccCCCCCCCCcccchhcHHHHHHHHhcCCCCcEEEEEEcCCCChHHHHHHHHHcccCcccc-cce-eEEEEeCCCCCh
Q 003890 175 IRLLSEGQPRLDISEFERGREELFDLLIEGPSGLSVVAILNGSGFDKTAFAADTYNNNHIKFY-FDC-LAWVRVSIAYDS 252 (788)
Q Consensus 175 ~~~~~~~~~~~~~vGr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-F~~-~~wv~vs~~~~~ 252 (788)
+.....+..+.+++|++..++.+.+++..+. ...+.++|++|+||||+|+.+++. +... +.. .+.+..+.....
T Consensus 15 ~~~k~~p~~~~~~~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKT~la~~l~~~--l~~~~~~~~~~~~~~~~~~~~ 90 (327)
T 1iqp_A 15 WVEKYRPQRLDDIVGQEHIVKRLKHYVKTGS--MPHLLFAGPPGVGKTTAALALARE--LFGENWRHNFLELNASDERGI 90 (327)
T ss_dssp HHHHTCCCSTTTCCSCHHHHHHHHHHHHHTC--CCEEEEESCTTSSHHHHHHHHHHH--HHGGGHHHHEEEEETTCHHHH
T ss_pred hhhccCCCCHHHhhCCHHHHHHHHHHHHcCC--CCeEEEECcCCCCHHHHHHHHHHH--hcCCcccCceEEeeccccCch
Confidence 3333344445789999999999999997764 444889999999999999999983 3221 111 333333221111
Q ss_pred HHHHHHHHHHcCCCCCCcccccCCHHHHHHHHHHHhcCCcEEEEEeCCCC-ChhhHHHHhhhcCCCCCCcEEEEecCCh
Q 003890 253 GKILDDIIKSVMPPSRVSVIIGEDYKLKKTILRDYLTNKKYFIVLDDVFN-DSDIWDDLEQVLPDNQNGSRVLITVTDL 330 (788)
Q Consensus 253 ~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVLDdvw~-~~~~~~~l~~~l~~~~~gskIivTTR~~ 330 (788)
.. .+..+....... ....+++.++|+||++. ....++.+...+.....++++|+||...
T Consensus 91 ~~-~~~~~~~~~~~~------------------~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~ 150 (327)
T 1iqp_A 91 NV-IREKVKEFARTK------------------PIGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYS 150 (327)
T ss_dssp HT-THHHHHHHHHSC------------------CGGGCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCG
T ss_pred HH-HHHHHHHHHhhC------------------CcCCCCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCc
Confidence 11 111111100000 01126788999999963 3456666766665555678888888764
No 163
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=98.23 E-value=6.3e-06 Score=85.82 Aligned_cols=112 Identities=8% Similarity=0.017 Sum_probs=76.0
Q ss_pred cccchhcHHHHHHHHhcC--CCCcEEEEEEcCCCChHHHHHHHHHcccCcc---cccc--eeEEEEeCCCCChHHHHHHH
Q 003890 187 ISEFERGREELFDLLIEG--PSGLSVVAILNGSGFDKTAFAADTYNNNHIK---FYFD--CLAWVRVSIAYDSGKILDDI 259 (788)
Q Consensus 187 ~vGr~~~~~~i~~~L~~~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~---~~F~--~~~wv~vs~~~~~~~~~~~i 259 (788)
+.|||+++++|...|... ......+-|+|++|+|||++|+.|++..... ...+ ..++++.....+...+...|
T Consensus 22 L~~Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~I 101 (318)
T 3te6_A 22 LKSQVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEKI 101 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHHHH
Confidence 789999999999888652 3356788999999999999999999843211 1111 25667777777888999999
Q ss_pred HHHcCCCCCCcccccCCHHHHHHHHHHH--hcCCcEEEEEeCCC
Q 003890 260 IKSVMPPSRVSVIIGEDYKLKKTILRDY--LTNKKYFIVLDDVF 301 (788)
Q Consensus 260 l~~l~~~~~~~~~~~~~~~~~~~~l~~~--l~~kr~LlVLDdvw 301 (788)
++++.+... ......+.+...+... -+++++++|||++.
T Consensus 102 ~~~L~g~~~---~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d 142 (318)
T 3te6_A 102 WFAISKENL---CGDISLEALNFYITNVPKAKKRKTLILIQNPE 142 (318)
T ss_dssp HHHHSCCC-----CCCCHHHHHHHHHHSCGGGSCEEEEEEECCS
T ss_pred HHHhcCCCC---CchHHHHHHHHHHHHhhhccCCceEEEEecHH
Confidence 999965432 1222333343333332 24578999999996
No 164
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.15 E-value=6.8e-07 Score=95.72 Aligned_cols=162 Identities=15% Similarity=0.061 Sum_probs=84.0
Q ss_pred ChhhcCCCCCcEEEccCCCC----------cccchhhhcccccceeeccCccCCCCCcCCcCccccccccccccccccCc
Q 003890 587 PSLLCTLLNLQTLEMPSSYV----------DQSPEDIWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFISTLNPSSCTP 656 (788)
Q Consensus 587 p~~i~~L~~L~~L~L~~~~l----------~~lp~~l~~L~~L~~L~l~~~~~~~~i~~~~~~l~~L~~L~~~~~~~~~~ 656 (788)
++++.++++|+.|.+.+... ..++..+..+|+|+.|+++++.. ..+
T Consensus 132 ~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~------------------------l~l 187 (362)
T 2ra8_A 132 VENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNN------------------------LSI 187 (362)
T ss_dssp HTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBT------------------------CBC
T ss_pred HHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCC------------------------cee
Confidence 44566778888888865421 12444455667777777755410 001
Q ss_pred cccCCCCCCCeEEEEccCCcChhcHHHhcc--CCCCCCEEEeecC--CCCCc--cccc-ccC--CCccccccc---cccc
Q 003890 657 DILGRLPNVQTLRISGDLSCYHSGVSKSLC--ELHKLECLKLVNE--RKPSR--MVLY-EYQ--FPPTDMARI---LSQL 724 (788)
Q Consensus 657 ~~l~~L~~L~~L~l~~~~~~~~~~~~~~l~--~l~~L~~L~L~~~--~~~~~--~~~~-~~l--~~~~~L~~L---~~~l 724 (788)
..+ .+++|++|.+..+. ........+. .+++|+.|+|+.+ ....+ ...+ ..+ ..+++|+.| .+.+
T Consensus 188 ~~~-~~~~L~~L~L~~~~--l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i 264 (362)
T 2ra8_A 188 GKK-PRPNLKSLEIISGG--LPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEE 264 (362)
T ss_dssp CSC-BCTTCSEEEEECSB--CCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTT
T ss_pred ccc-cCCCCcEEEEecCC--CChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCC
Confidence 111 15567777766554 2222223332 5667777776521 00000 0000 111 235677777 2333
Q ss_pred cccccCccc---CCCCCcceEEEeccccccccccCCcccccccccCCeeEecccC
Q 003890 725 IRQEFVESE---MSLPLLQLLDLEESDEEDDERSDILEILQDINDFVHESEEAID 776 (788)
Q Consensus 725 ~~~~lp~~l---~~l~~L~~L~L~~~~l~~~~~~~~l~~l~~L~~L~~L~L~~~~ 776 (788)
+...+..+ ..+++|++|+|+.|.+.+.+.......+..+++|+.|+|++|.
T Consensus 265 -~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~ 318 (362)
T 2ra8_A 265 -QNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNY 318 (362)
T ss_dssp -HHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBB
T ss_pred -chHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCc
Confidence 11111111 2478999999999998764100001234678999999999884
No 165
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.15 E-value=1.4e-06 Score=94.04 Aligned_cols=60 Identities=15% Similarity=0.097 Sum_probs=28.2
Q ss_pred CCCccEEEecCCCCcc-----cChhhcCCCCCcEEEccCCCCcc-----cchhhhcccccceeeccCccC
Q 003890 570 LFHLKYLKLNIPSLKC-----LPSLLCTLLNLQTLEMPSSYVDQ-----SPEDIWMMQKLMHLNFGSITL 629 (788)
Q Consensus 570 L~~L~~L~L~~~~i~~-----lp~~i~~L~~L~~L~L~~~~l~~-----lp~~l~~L~~L~~L~l~~~~~ 629 (788)
..+|++|+|++|.+.. ++..+..+++|++|+|++|.+.. ++..+...++|++|++++|.+
T Consensus 154 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i 223 (372)
T 3un9_A 154 QCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGA 223 (372)
T ss_dssp TCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCC
T ss_pred CCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCC
Confidence 3445555555555432 23333445555555555554332 223344445555555555543
No 166
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.14 E-value=3.6e-06 Score=81.16 Aligned_cols=46 Identities=11% Similarity=0.069 Sum_probs=39.6
Q ss_pred CCCcccchhcHHHHHHHHhcCCCCcEEEEEEcCCCChHHHHHHHHHcc
Q 003890 184 RLDISEFERGREELFDLLIEGPSGLSVVAILNGSGFDKTAFAADTYNN 231 (788)
Q Consensus 184 ~~~~vGr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 231 (788)
+..++||+..++++.+.+.... .+.+.|+|.+|+|||+||+.+++.
T Consensus 21 ~~~~~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 21 LDPVIGRDEEIRRTIQVLQRRT--KNNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp SCCCCSCHHHHHHHHHHHTSSS--SCEEEEECCTTSCHHHHHHHHHHH
T ss_pred ccccccchHHHHHHHHHHhcCC--CCceEEECCCCCCHHHHHHHHHHH
Confidence 3679999999999999987643 556789999999999999999873
No 167
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.04 E-value=4.3e-06 Score=80.55 Aligned_cols=111 Identities=13% Similarity=0.046 Sum_probs=79.3
Q ss_pred ccccceEEecCC-CCchhhhhhhhhhhcCCccccEEEecCCCCC-----CCCccccCCCCccEEEecCCCCcc-----cC
Q 003890 519 DIYLQSFLNHSS-ESDHLALIDCENFCEKFKHLRILNLGSAVLV-----QFPPGLENLFHLKYLKLNIPSLKC-----LP 587 (788)
Q Consensus 519 ~~~Lr~L~l~~~-~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~-----~lp~~i~~L~~L~~L~L~~~~i~~-----lp 587 (788)
.+.|++|.+.++ .....-...+...+...++|++|+|++|.+. .+...+....+|++|+|++|.|.. +.
T Consensus 35 ~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~ 114 (185)
T 1io0_A 35 DPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALV 114 (185)
T ss_dssp CTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHH
T ss_pred CCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHH
Confidence 778888888887 6543333334466777888889999888876 234455566788888888888774 45
Q ss_pred hhhcCCCCCcEEEc--cCCCCcc-----cchhhhcccccceeeccCccC
Q 003890 588 SLLCTLLNLQTLEM--PSSYVDQ-----SPEDIWMMQKLMHLNFGSITL 629 (788)
Q Consensus 588 ~~i~~L~~L~~L~L--~~~~l~~-----lp~~l~~L~~L~~L~l~~~~~ 629 (788)
..+...++|++|+| ++|.+.. +...+...++|++|++++|.+
T Consensus 115 ~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i 163 (185)
T 1io0_A 115 EALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ 163 (185)
T ss_dssp HGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred HHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence 66777788889988 7776653 444566678888888877654
No 168
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=97.94 E-value=3.4e-05 Score=83.15 Aligned_cols=140 Identities=14% Similarity=0.031 Sum_probs=75.4
Q ss_pred CCCCcccchhcHHHHHHHHhcCCCCcEEEEEEcCCCChHHHHHHHHHcccCcccccceeEEEEeCCCCChHHHHHHHHHH
Q 003890 183 PRLDISEFERGREELFDLLIEGPSGLSVVAILNGSGFDKTAFAADTYNNNHIKFYFDCLAWVRVSIAYDSGKILDDIIKS 262 (788)
Q Consensus 183 ~~~~~vGr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~~ 262 (788)
.+.+++|++..++.+.+.+..+. ....+.|+|.+|+||||+|+.+.+.......+. ...+........+...
T Consensus 14 ~~~~~vg~~~~~~~L~~~l~~~~-~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~-------~~~~~~~~~~~~~~~~ 85 (373)
T 1jr3_A 14 TFADVVGQEHVLTALANGLSLGR-IHHAYLFSGTRGVGKTSIARLLAKGLNCETGIT-------ATPCGVCDNCREIEQG 85 (373)
T ss_dssp STTTSCSCHHHHHHHHHHHHHTC-CCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSC-------SSCCSSSHHHHHHHTS
T ss_pred chhhccCcHHHHHHHHHHHHhCC-CCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCC-------CCCCcccHHHHHHhcc
Confidence 34779999999999999997654 235778999999999999999987421111110 0000000011111110
Q ss_pred cCCCCC----CcccccCCHHHHHHHHHHH-hcCCcEEEEEeCCCC-ChhhHHHHhhhcCCCCCCcEEEEecCCh
Q 003890 263 VMPPSR----VSVIIGEDYKLKKTILRDY-LTNKKYFIVLDDVFN-DSDIWDDLEQVLPDNQNGSRVLITVTDL 330 (788)
Q Consensus 263 l~~~~~----~~~~~~~~~~~~~~~l~~~-l~~kr~LlVLDdvw~-~~~~~~~l~~~l~~~~~gskIivTTR~~ 330 (788)
...... ...........+...+... ..+++.++|+||+.. +...++.+...+.....+..+|++|...
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~ 159 (373)
T 1jr3_A 86 RFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDP 159 (373)
T ss_dssp CCSSCEEEETTCSCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEESCG
T ss_pred CCCceEEecccccCCHHHHHHHHHHHhhccccCCeEEEEEECcchhcHHHHHHHHHHHhcCCCceEEEEEeCCh
Confidence 000000 0000111222222221111 135678999999952 3456677776666555567777777643
No 169
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=97.94 E-value=1.1e-05 Score=84.77 Aligned_cols=124 Identities=11% Similarity=0.055 Sum_probs=76.1
Q ss_pred CCCCCCcccchhcHHHHHHHHhcCCCCcEEEEEEcCCCChHHHHHHHHHcccCc-ccccce-eEEEEeCCCCChHHHHHH
Q 003890 181 GQPRLDISEFERGREELFDLLIEGPSGLSVVAILNGSGFDKTAFAADTYNNNHI-KFYFDC-LAWVRVSIAYDSGKILDD 258 (788)
Q Consensus 181 ~~~~~~~vGr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~-~~~F~~-~~wv~vs~~~~~~~~~~~ 258 (788)
+..+.+++|++..++.+.+++..+. ...+.++|++|+||||+|+.+++. + ...+.. .+.++.+.......+
T Consensus 13 p~~~~~~~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKt~la~~l~~~--l~~~~~~~~~~~~~~~~~~~~~~~--- 85 (319)
T 2chq_A 13 PRTLDEVVGQDEVIQRLKGYVERKN--IPHLLFSGPPGTGKTATAIALARD--LFGENWRDNFIEMNASDERGIDVV--- 85 (319)
T ss_dssp CSSGGGSCSCHHHHHHHHTTTTTTC--CCCEEEESSSSSSHHHHHHHHHHH--HHTTCHHHHCEEEETTSTTCTTTS---
T ss_pred CCCHHHHhCCHHHHHHHHHHHhCCC--CCeEEEECcCCcCHHHHHHHHHHH--hcCCcccCCeEEEeCccccChHHH---
Confidence 3344789999999999988887654 334889999999999999999873 2 112221 333444332111100
Q ss_pred HHHHcCCCCCCcccccCCHHHHHHHHHHH--h-cCCcEEEEEeCCCC-ChhhHHHHhhhcCCCCCCcEEEEecCCh
Q 003890 259 IIKSVMPPSRVSVIIGEDYKLKKTILRDY--L-TNKKYFIVLDDVFN-DSDIWDDLEQVLPDNQNGSRVLITVTDL 330 (788)
Q Consensus 259 il~~l~~~~~~~~~~~~~~~~~~~~l~~~--l-~~kr~LlVLDdvw~-~~~~~~~l~~~l~~~~~gskIivTTR~~ 330 (788)
.......... + .+++.++|+|++.. .....+.+...+.....+..+|+||...
T Consensus 86 -------------------~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~ 142 (319)
T 2chq_A 86 -------------------RHKIKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYV 142 (319)
T ss_dssp -------------------SHHHHHHHHSCCSSSCCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCG
T ss_pred -------------------HHHHHHHHhcCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCh
Confidence 0111111101 1 25688999999952 3455566766666655678888888654
No 170
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.78 E-value=1.3e-05 Score=81.43 Aligned_cols=83 Identities=22% Similarity=0.135 Sum_probs=62.8
Q ss_pred hhhhcCCccccEEEecCCCCCCC---CccccCCCCccEEEecCCCCcccChhhcCCC--CCcEEEccCCCCcc-cc----
Q 003890 541 ENFCEKFKHLRILNLGSAVLVQF---PPGLENLFHLKYLKLNIPSLKCLPSLLCTLL--NLQTLEMPSSYVDQ-SP---- 610 (788)
Q Consensus 541 ~~~~~~l~~L~~L~L~~~~l~~l---p~~i~~L~~L~~L~L~~~~i~~lp~~i~~L~--~L~~L~L~~~~l~~-lp---- 610 (788)
+-...++++|+.|+|++|.|+.+ |..+..+++|++|+|++|.|..+ ..+..+. +|++|+|++|.+.. +|
T Consensus 163 ~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~-~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~ 241 (267)
T 3rw6_A 163 RIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE-RELDKIKGLKLEELWLDGNSLCDTFRDQST 241 (267)
T ss_dssp HHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG-GGGGGGTTSCCSEEECTTSTTGGGCSSHHH
T ss_pred HHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc-hhhhhcccCCcceEEccCCcCccccCcchh
Confidence 34446788999999999998754 35667899999999999998877 3455555 89999999996653 33
Q ss_pred ---hhhhcccccceeec
Q 003890 611 ---EDIWMMQKLMHLNF 624 (788)
Q Consensus 611 ---~~l~~L~~L~~L~l 624 (788)
..+..+++|+.||-
T Consensus 242 y~~~il~~~P~L~~LDg 258 (267)
T 3rw6_A 242 YISAIRERFPKLLRLDG 258 (267)
T ss_dssp HHHHHHHHCTTCCEESS
T ss_pred HHHHHHHHCcccCeECC
Confidence 23678888888874
No 171
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=97.74 E-value=2.8e-05 Score=71.45 Aligned_cols=113 Identities=9% Similarity=-0.066 Sum_probs=64.5
Q ss_pred CcccchhcHHHHHHHHhcCCCCcEEEEEEcCCCChHHHHHHHHHcccCcccccceeEEEEeCCCCChHHHHHHHHHHcCC
Q 003890 186 DISEFERGREELFDLLIEGPSGLSVVAILNGSGFDKTAFAADTYNNNHIKFYFDCLAWVRVSIAYDSGKILDDIIKSVMP 265 (788)
Q Consensus 186 ~~vGr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~~l~~ 265 (788)
+++|+...+.++.+.+..-.....-|-|+|.+|+|||++|+.+++... +...+ .+ ++++...+..
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~~~~~-~~~~~-~v-~~~~~~~~~~------------ 66 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQFGR-NAQGE-FV-YRELTPDNAP------------ 66 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTTCCSCEEEESSTTSSHHHHHHHHHHSST-TTTSC-CE-EEECCTTTSS------------
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHHHhCC-ccCCC-EE-EECCCCCcch------------
Confidence 588999999999988854222233467999999999999999998321 11112 23 5554432210
Q ss_pred CCCCcccccCCHHHHHHHHHHHhcCCcEEEEEeCCCC-ChhhHHHHhhhcCCCCCCcEEEEecCC
Q 003890 266 PSRVSVIIGEDYKLKKTILRDYLTNKKYFIVLDDVFN-DSDIWDDLEQVLPDNQNGSRVLITVTD 329 (788)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVLDdvw~-~~~~~~~l~~~l~~~~~gskIivTTR~ 329 (788)
.... .+.. ...-.|++|++.. .......+...+.......+||.||..
T Consensus 67 ----------~~~~---~~~~---a~~g~l~ldei~~l~~~~q~~Ll~~l~~~~~~~~~I~~t~~ 115 (145)
T 3n70_A 67 ----------QLND---FIAL---AQGGTLVLSHPEHLTREQQYHLVQLQSQEHRPFRLIGIGDT 115 (145)
T ss_dssp ----------CHHH---HHHH---HTTSCEEEECGGGSCHHHHHHHHHHHHSSSCSSCEEEEESS
T ss_pred ----------hhhc---HHHH---cCCcEEEEcChHHCCHHHHHHHHHHHhhcCCCEEEEEECCc
Confidence 0011 1111 1234689999962 334445555555443445677777764
No 172
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=97.71 E-value=3.8e-05 Score=73.49 Aligned_cols=46 Identities=13% Similarity=0.060 Sum_probs=39.4
Q ss_pred CCCcccchhcHHHHHHHHhcCCCCcEEEEEEcCCCChHHHHHHHHHcc
Q 003890 184 RLDISEFERGREELFDLLIEGPSGLSVVAILNGSGFDKTAFAADTYNN 231 (788)
Q Consensus 184 ~~~~vGr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 231 (788)
+.+++|++.+++.+.+.+.... .+.+.|+|.+|+||||||+.+++.
T Consensus 21 ~~~~~g~~~~~~~l~~~l~~~~--~~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 21 LDPVIGRDTEIRRAIQILSRRT--KNNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp SCCCCSCHHHHHHHHHHHTSSS--SCEEEEESCGGGCHHHHHHHHHHH
T ss_pred cchhhcchHHHHHHHHHHhCCC--CCceEEECCCCCCHHHHHHHHHHH
Confidence 3679999999999999997643 456689999999999999999873
No 173
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=97.70 E-value=8.8e-05 Score=78.25 Aligned_cols=130 Identities=12% Similarity=0.142 Sum_probs=79.1
Q ss_pred cccccCCCCCCCCcccchhcHHHHHHHHhcCCCCcEEEEEEcCCCChHHHHHHHHHcccCcccccceeEEEEeCCCCChH
Q 003890 174 IIRLLSEGQPRLDISEFERGREELFDLLIEGPSGLSVVAILNGSGFDKTAFAADTYNNNHIKFYFDCLAWVRVSIAYDSG 253 (788)
Q Consensus 174 ~~~~~~~~~~~~~~vGr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~ 253 (788)
++.....+..+.+++|.+..++.+.+++..+. ...++-+.|.+|+|||++|+.+.+. .. ...+.++.+.. ..
T Consensus 15 ~~~~k~rP~~~~~ivg~~~~~~~l~~~l~~~~-~~~~~L~~G~~G~GKT~la~~la~~--l~---~~~~~i~~~~~-~~- 86 (324)
T 3u61_B 15 ILEQKYRPSTIDECILPAFDKETFKSITSKGK-IPHIILHSPSPGTGKTTVAKALCHD--VN---ADMMFVNGSDC-KI- 86 (324)
T ss_dssp SHHHHSCCCSTTTSCCCHHHHHHHHHHHHTTC-CCSEEEECSSTTSSHHHHHHHHHHH--TT---EEEEEEETTTC-CH-
T ss_pred hHHHhhCCCCHHHHhCcHHHHHHHHHHHHcCC-CCeEEEeeCcCCCCHHHHHHHHHHH--hC---CCEEEEccccc-CH-
Confidence 34444444555889999999999999998654 3457778888999999999999983 32 12444554332 22
Q ss_pred HHHHHHHHHcCCCCCCcccccCCHHHHHHHHHHHhcCCcEEEEEeCCCC-C-hhhHHHHhhhcCCCCCCcEEEEecCCh
Q 003890 254 KILDDIIKSVMPPSRVSVIIGEDYKLKKTILRDYLTNKKYFIVLDDVFN-D-SDIWDDLEQVLPDNQNGSRVLITVTDL 330 (788)
Q Consensus 254 ~~~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVLDdvw~-~-~~~~~~l~~~l~~~~~gskIivTTR~~ 330 (788)
...++.+....... .+.+++-++|+||+.. . .+..+.+...+.....+.++|+||...
T Consensus 87 ~~i~~~~~~~~~~~-------------------~~~~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~ 146 (324)
T 3u61_B 87 DFVRGPLTNFASAA-------------------SFDGRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNI 146 (324)
T ss_dssp HHHHTHHHHHHHBC-------------------CCSSCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSG
T ss_pred HHHHHHHHHHHhhc-------------------ccCCCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCc
Confidence 22222222111000 0124778999999962 2 344555555444333466788887753
No 174
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.67 E-value=1.9e-05 Score=74.44 Aligned_cols=87 Identities=10% Similarity=0.029 Sum_probs=59.8
Q ss_pred CCCeEEEEccCCcChhcHHHhccCCCCCCEEEeecCCCCCcccccccCCCccccccccccccccccCcccCCC----CCc
Q 003890 664 NVQTLRISGDLSCYHSGVSKSLCELHKLECLKLVNERKPSRMVLYEYQFPPTDMARILSQLIRQEFVESEMSL----PLL 739 (788)
Q Consensus 664 ~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~l~~~~~L~~L~~~l~~~~lp~~l~~l----~~L 739 (788)
+|++|++++|. ....-...+.++++|+.|+|++|...++ ..+ . .+..+ ++|
T Consensus 62 ~L~~LDLs~~~--Itd~GL~~L~~~~~L~~L~L~~C~~ItD-----------------~gL--~----~L~~~~~~~~~L 116 (176)
T 3e4g_A 62 KIQAIDATDSC--IMSIGFDHMEGLQYVEKIRLCKCHYIED-----------------GCL--E----RLSQLENLQKSM 116 (176)
T ss_dssp CEEEEEEESCC--CCGGGGGGGTTCSCCCEEEEESCTTCCH-----------------HHH--H----HHHTCHHHHHHC
T ss_pred eEeEEeCcCCC--ccHHHHHHhcCCCCCCEEEeCCCCccCH-----------------HHH--H----HHHhcccccCCC
Confidence 57788888886 4444455677888888888887654421 001 1 12222 468
Q ss_pred ceEEEeccc-cccccccCCcccccccccCCeeEecccCchh
Q 003890 740 QLLDLEESD-EEDDERSDILEILQDINDFVHESEEAIDTFF 779 (788)
Q Consensus 740 ~~L~L~~~~-l~~~~~~~~l~~l~~L~~L~~L~L~~~~~l~ 779 (788)
++|+|++|. +++. .+..+..+++|++|+|++|+.++
T Consensus 117 ~~L~Ls~C~~ITD~----Gl~~L~~~~~L~~L~L~~c~~It 153 (176)
T 3e4g_A 117 LEMEIISCGNVTDK----GIIALHHFRNLKYLFLSDLPGVK 153 (176)
T ss_dssp CEEEEESCTTCCHH----HHHHGGGCTTCCEEEEESCTTCC
T ss_pred CEEEcCCCCcCCHH----HHHHHhcCCCCCEEECCCCCCCC
Confidence 889998885 6666 67778888899999999988665
No 175
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.64 E-value=8.7e-05 Score=70.87 Aligned_cols=125 Identities=13% Similarity=0.031 Sum_probs=64.5
Q ss_pred CCCccc----chhcHHHHHHHHhcCC-CCcEEEEEEcCCCChHHHHHHHHHcccCcccccceeEEEEeCCCCChHHHHHH
Q 003890 184 RLDISE----FERGREELFDLLIEGP-SGLSVVAILNGSGFDKTAFAADTYNNNHIKFYFDCLAWVRVSIAYDSGKILDD 258 (788)
Q Consensus 184 ~~~~vG----r~~~~~~i~~~L~~~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~ 258 (788)
|.++++ ....++.+.+++..-. ..-..+.|+|.+|+||||||+.+++.......+. ++++ +..++...
T Consensus 9 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~-~~~~------~~~~~~~~ 81 (180)
T 3ec2_A 9 LDTYHPKNVSQNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIR-GYFF------DTKDLIFR 81 (180)
T ss_dssp SSSCCCCSHHHHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCC-CCEE------EHHHHHHH
T ss_pred cccccCCCHHHHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCe-EEEE------EHHHHHHH
Confidence 345554 3344444555544322 2346899999999999999999998321112221 3343 34444444
Q ss_pred HHHHcCCCCCCcccccCCHHHHHHHHHHHhcCCcEEEEEeCCCC-ChhhHH--HHhhhcCC-CCCCcEEEEecCC
Q 003890 259 IIKSVMPPSRVSVIIGEDYKLKKTILRDYLTNKKYFIVLDDVFN-DSDIWD--DLEQVLPD-NQNGSRVLITVTD 329 (788)
Q Consensus 259 il~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVLDdvw~-~~~~~~--~l~~~l~~-~~~gskIivTTR~ 329 (788)
+......... ..... .+. +.-+|||||++. ..+.|. .+...+.. ...|..||+||..
T Consensus 82 ~~~~~~~~~~---------~~~~~----~~~-~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~ 142 (180)
T 3ec2_A 82 LKHLMDEGKD---------TKFLK----TVL-NSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNY 142 (180)
T ss_dssp HHHHHHHTCC---------SHHHH----HHH-TCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCC
T ss_pred HHHHhcCchH---------HHHHH----Hhc-CCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 4443322211 01111 222 456899999972 223332 23222221 1246678888874
No 176
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=97.63 E-value=6.3e-05 Score=77.77 Aligned_cols=48 Identities=17% Similarity=0.139 Sum_probs=39.0
Q ss_pred CCCcccchhcHHHHHHHHhcC-----------CCCcEEEEEEcCCCChHHHHHHHHHcc
Q 003890 184 RLDISEFERGREELFDLLIEG-----------PSGLSVVAILNGSGFDKTAFAADTYNN 231 (788)
Q Consensus 184 ~~~~vGr~~~~~~i~~~L~~~-----------~~~~~vi~I~G~gGiGKTtLa~~v~~~ 231 (788)
+.+++|.+..++++.+.+... -...+-+-|+|.+|+|||+||+.+++.
T Consensus 16 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~ 74 (285)
T 3h4m_A 16 YEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATE 74 (285)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHH
Confidence 378999999999998887431 123556889999999999999999983
No 177
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.63 E-value=1.6e-05 Score=76.56 Aligned_cols=118 Identities=14% Similarity=0.093 Sum_probs=84.4
Q ss_pred hhhhhhcCCccccEEEecCC-CCC-----CCCccccCCCCccEEEecCCCCcc-----cChhhcCCCCCcEEEccCCCCc
Q 003890 539 DCENFCEKFKHLRILNLGSA-VLV-----QFPPGLENLFHLKYLKLNIPSLKC-----LPSLLCTLLNLQTLEMPSSYVD 607 (788)
Q Consensus 539 ~~~~~~~~l~~L~~L~L~~~-~l~-----~lp~~i~~L~~L~~L~L~~~~i~~-----lp~~i~~L~~L~~L~L~~~~l~ 607 (788)
.+...+...+.|+.|+|++| .+. .+...+....+|++|+|++|.+.. +...+...++|++|+|++|.+.
T Consensus 27 ~l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~ 106 (185)
T 1io0_A 27 TLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFIS 106 (185)
T ss_dssp HHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCC
T ss_pred HHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCC
Confidence 34578888999999999999 876 345667778899999999999863 4556667789999999999776
Q ss_pred c-----cchhhhcccccceeec--cCccCCCCCcCCcCccccccccccccccccCccccCCCCCCCeEEEEccC
Q 003890 608 Q-----SPEDIWMMQKLMHLNF--GSITLPAPPKNYSSSLKNLIFISTLNPSSCTPDILGRLPNVQTLRISGDL 674 (788)
Q Consensus 608 ~-----lp~~l~~L~~L~~L~l--~~~~~~~~i~~~~~~l~~L~~L~~~~~~~~~~~~l~~L~~L~~L~l~~~~ 674 (788)
. +...+...++|++|++ ++|.+...- ... ....+...++|++|++++|.
T Consensus 107 ~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g------~~~------------l~~~L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 107 GSGILALVEALQSNTSLIELRIDNQSQPLGNNV------EME------------IANMLEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp HHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHH------HHH------------HHHHHHHCSSCCEEECCCSS
T ss_pred HHHHHHHHHHHHhCCCceEEEecCCCCCCCHHH------HHH------------HHHHHHhCCCcCEEeccCCC
Confidence 4 4556777788999998 656554211 000 11123445678888888775
No 178
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.61 E-value=7.3e-05 Score=79.81 Aligned_cols=142 Identities=11% Similarity=0.024 Sum_probs=76.5
Q ss_pred ccCCCCCCCCcccchhcHHHHHHHHhcCCCCcEEEEEEcCCCChHHHHHHHHHcccCcccccce-eEEEEeCCCCChHHH
Q 003890 177 LLSEGQPRLDISEFERGREELFDLLIEGPSGLSVVAILNGSGFDKTAFAADTYNNNHIKFYFDC-LAWVRVSIAYDSGKI 255 (788)
Q Consensus 177 ~~~~~~~~~~~vGr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~-~~wv~vs~~~~~~~~ 255 (788)
....+..+.+++|++..++.+..++..+. ...+.++|.+|+||||+|+.+.+.......+.. ...+..+.......
T Consensus 29 ~k~~p~~~~~i~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~- 105 (353)
T 1sxj_D 29 EKYRPKNLDEVTAQDHAVTVLKKTLKSAN--LPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDERGISI- 105 (353)
T ss_dssp HHTCCSSTTTCCSCCTTHHHHHHHTTCTT--CCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSSCCCHHH-
T ss_pred HhcCCCCHHHhhCCHHHHHHHHHHHhcCC--CCEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEccccccchHH-
Confidence 33334445889999999999999987654 233889999999999999999883111111221 33344333222222
Q ss_pred HHHHHHHcCCCCCCcccccCCHHHHHHHHHHHhcCCcEEEEEeCCCC-ChhhHHHHhhhcCCCCCCcEEEEecCC
Q 003890 256 LDDIIKSVMPPSRVSVIIGEDYKLKKTILRDYLTNKKYFIVLDDVFN-DSDIWDDLEQVLPDNQNGSRVLITVTD 329 (788)
Q Consensus 256 ~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVLDdvw~-~~~~~~~l~~~l~~~~~gskIivTTR~ 329 (788)
.++.+..+...... ..... .....-.+++-+|++|++.. .....+.+...+.......++|++|..
T Consensus 106 ~~~~~~~~~~~~~~---~~~~~-----~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~ 172 (353)
T 1sxj_D 106 VREKVKNFARLTVS---KPSKH-----DLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNY 172 (353)
T ss_dssp HTTHHHHHHHSCCC---CCCTT-----HHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESC
T ss_pred HHHHHHHHhhhccc---ccchh-----hcccCCCCCceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeCc
Confidence 22222211110000 00000 00111124567999999852 334455565555444446677777754
No 179
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.61 E-value=0.0014 Score=70.99 Aligned_cols=104 Identities=5% Similarity=0.007 Sum_probs=62.5
Q ss_pred cCCCCCCCeEEEEccCCcChhcHHHhccCCCCCCEEEeecCCCCCcccccccCCCccccccc--cccccccccC-cccCC
Q 003890 659 LGRLPNVQTLRISGDLSCYHSGVSKSLCELHKLECLKLVNERKPSRMVLYEYQFPPTDMARI--LSQLIRQEFV-ESEMS 735 (788)
Q Consensus 659 l~~L~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~l~~~~~L~~L--~~~l~~~~lp-~~l~~ 735 (788)
+..+++|+.+.+.... ...-...+.++++|+.+.+.+.-.. ..-..+..+.+|+.+ -..+ ..++ ..|..
T Consensus 261 F~~c~~L~~i~lp~~~---~~I~~~aF~~c~~L~~i~l~~~i~~---I~~~aF~~c~~L~~i~lp~~v--~~I~~~aF~~ 332 (394)
T 4gt6_A 261 FDSCAYLASVKMPDSV---VSIGTGAFMNCPALQDIEFSSRITE---LPESVFAGCISLKSIDIPEGI--TQILDDAFAG 332 (394)
T ss_dssp TTTCSSCCEEECCTTC---CEECTTTTTTCTTCCEEECCTTCCE---ECTTTTTTCTTCCEEECCTTC--CEECTTTTTT
T ss_pred eeecccccEEeccccc---ceecCcccccccccccccCCCcccc---cCceeecCCCCcCEEEeCCcc--cEehHhHhhC
Confidence 4555666666654332 1222345566677777777532211 234456677788877 3344 4443 34667
Q ss_pred CCCcceEEEeccccccccccCCcccccccccCCeeEeccc
Q 003890 736 LPLLQLLDLEESDEEDDERSDILEILQDINDFVHESEEAI 775 (788)
Q Consensus 736 l~~L~~L~L~~~~l~~~~~~~~l~~l~~L~~L~~L~L~~~ 775 (788)
+.+|+.+.|..+ +... .-..|.++++|+.+++.+.
T Consensus 333 C~~L~~i~ip~s-v~~I----~~~aF~~C~~L~~i~~~~~ 367 (394)
T 4gt6_A 333 CEQLERIAIPSS-VTKI----PESAFSNCTALNNIEYSGS 367 (394)
T ss_dssp CTTCCEEEECTT-CCBC----CGGGGTTCTTCCEEEESSC
T ss_pred CCCCCEEEECcc-cCEE----hHhHhhCCCCCCEEEECCc
Confidence 788888888654 4433 3456788888888888765
No 180
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.57 E-value=0.00017 Score=77.03 Aligned_cols=49 Identities=12% Similarity=-0.042 Sum_probs=38.4
Q ss_pred CCCCCCCcccchhcHHHHHHHH-hcCCCCcEEEEEEcCCCChHHHHHHHHHc
Q 003890 180 EGQPRLDISEFERGREELFDLL-IEGPSGLSVVAILNGSGFDKTAFAADTYN 230 (788)
Q Consensus 180 ~~~~~~~~vGr~~~~~~i~~~L-~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 230 (788)
.|..+.+++|.+...+.+.+++ ..+. ... +.|+|..|+||||+|+.+..
T Consensus 9 rP~~~~~~vg~~~~~~~l~~~~~~~~~-~~~-~ll~Gp~G~GKTtl~~~la~ 58 (354)
T 1sxj_E 9 RPKSLNALSHNEELTNFLKSLSDQPRD-LPH-LLLYGPNGTGKKTRCMALLE 58 (354)
T ss_dssp CCCSGGGCCSCHHHHHHHHTTTTCTTC-CCC-EEEECSTTSSHHHHHHTHHH
T ss_pred CCCCHHHhcCCHHHHHHHHHHHhhCCC-CCe-EEEECCCCCCHHHHHHHHHH
Confidence 3444478999999988888887 4433 233 89999999999999998876
No 181
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.50 E-value=1.5e-05 Score=80.96 Aligned_cols=104 Identities=17% Similarity=0.133 Sum_probs=71.2
Q ss_pred hcCCccccE--EEecCCCCCCCCcc----ccCCCCccEEEecCCCCcccC---hhhcCCCCCcEEEccCCCCcccchhhh
Q 003890 544 CEKFKHLRI--LNLGSAVLVQFPPG----LENLFHLKYLKLNIPSLKCLP---SLLCTLLNLQTLEMPSSYVDQSPEDIW 614 (788)
Q Consensus 544 ~~~l~~L~~--L~L~~~~l~~lp~~----i~~L~~L~~L~L~~~~i~~lp---~~i~~L~~L~~L~L~~~~l~~lp~~l~ 614 (788)
|...+.|.. ++++.|....++.. ..++++|+.|+|++|.+..++ ..+..+++|++|+|++|.+..+.. +.
T Consensus 137 l~~dp~L~~~~l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~-l~ 215 (267)
T 3rw6_A 137 LRSDPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERE-LD 215 (267)
T ss_dssp GGGCHHHHHTTCCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGG-GG
T ss_pred cCCCcchhhcCccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchh-hh
Confidence 444455555 66667754433321 246889999999999988654 566799999999999998887743 55
Q ss_pred ccc--ccceeeccCccCCCCCcC-------CcCcccccccccc
Q 003890 615 MMQ--KLMHLNFGSITLPAPPKN-------YSSSLKNLIFIST 648 (788)
Q Consensus 615 ~L~--~L~~L~l~~~~~~~~i~~-------~~~~l~~L~~L~~ 648 (788)
.+. +|++|++++|.+...+|+ .+..+++|+.|+.
T Consensus 216 ~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LDg 258 (267)
T 3rw6_A 216 KIKGLKLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLDG 258 (267)
T ss_dssp GGTTSCCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEESS
T ss_pred hcccCCcceEEccCCcCccccCcchhHHHHHHHHCcccCeECC
Confidence 555 899999998876643321 1345566666654
No 182
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.48 E-value=0.0022 Score=69.53 Aligned_cols=239 Identities=13% Similarity=0.056 Sum_probs=114.9
Q ss_pred ccccccccceEEecCCCCchhhhhhhhhhhcCCccccEEEecCCCCCCCC-ccccCCCCccEEEecCC------------
Q 003890 515 LEHSDIYLQSFLNHSSESDHLALIDCENFCEKFKHLRILNLGSAVLVQFP-PGLENLFHLKYLKLNIP------------ 581 (788)
Q Consensus 515 ~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp-~~i~~L~~L~~L~L~~~------------ 581 (788)
+.. |.+|+++.+-.+- ..+-..+|.++.+|+.+++..+ ++.++ ..+.++..|+.+.+..+
T Consensus 67 F~~-c~~L~~i~lp~~i-----~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~l~~i~~~aF~~~ 139 (394)
T 4fs7_A 67 FQG-CRKVTEIKIPSTV-----REIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLMLKSIGVEAFKGC 139 (394)
T ss_dssp TTT-CTTEEEEECCTTC-----CEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTTCCEECTTTTTTC
T ss_pred hhC-CCCceEEEeCCCc-----cCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCceeeecceeeecc
Confidence 445 6667776664321 1122366677777777777543 33332 23444444444333221
Q ss_pred ---------CCccc-ChhhcCCCCCcEEEccCCCCcccch-hhhcccccceeeccCc--cCCCCCcCCcCcccccccccc
Q 003890 582 ---------SLKCL-PSLLCTLLNLQTLEMPSSYVDQSPE-DIWMMQKLMHLNFGSI--TLPAPPKNYSSSLKNLIFIST 648 (788)
Q Consensus 582 ---------~i~~l-p~~i~~L~~L~~L~L~~~~l~~lp~-~l~~L~~L~~L~l~~~--~~~~~i~~~~~~l~~L~~L~~ 648 (788)
.+..+ ...+.++.+|+.+.+.++ +..++. .+.++.+|+.+.+..+ .+.. ..|.++..|+.+.+
T Consensus 140 ~~~~~~~~~~~~~i~~~aF~~c~~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~~~~~~I~~---~~F~~~~~L~~i~~ 215 (394)
T 4fs7_A 140 DFKEITIPEGVTVIGDEAFATCESLEYVSLPDS-METLHNGLFSGCGKLKSIKLPRNLKIIRD---YCFAECILLENMEF 215 (394)
T ss_dssp CCSEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCBCCCCTTCCEECT---TTTTTCTTCCBCCC
T ss_pred cccccccCccccccchhhhcccCCCcEEecCCc-cceeccccccCCCCceEEEcCCCceEeCc---hhhccccccceeec
Confidence 11112 124566777777777554 334444 4666777777766533 1111 11355556655554
Q ss_pred ccccccCccccCCCCCCCeEEEEccCCcChhcHHHhccCCCCCCEEEeecCCCC------------------Cccccccc
Q 003890 649 LNPSSCTPDILGRLPNVQTLRISGDLSCYHSGVSKSLCELHKLECLKLVNERKP------------------SRMVLYEY 710 (788)
Q Consensus 649 ~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~------------------~~~~~~~~ 710 (788)
.......-.......+|+.+.+.... ...-...+..+..|+.+.+..+... .....-..
T Consensus 216 ~~~~~~i~~~~~~~~~l~~i~ip~~~---~~i~~~~f~~~~~l~~~~~~~~~~~i~~~~F~~~~~l~~~~~~~~~i~~~~ 292 (394)
T 4fs7_A 216 PNSLYYLGDFALSKTGVKNIIIPDSF---TELGKSVFYGCTDLESISIQNNKLRIGGSLFYNCSGLKKVIYGSVIVPEKT 292 (394)
T ss_dssp CTTCCEECTTTTTTCCCCEEEECTTC---CEECSSTTTTCSSCCEEEECCTTCEECSCTTTTCTTCCEEEECSSEECTTT
T ss_pred CCCceEeehhhcccCCCceEEECCCc---eecccccccccccceeEEcCCCcceeeccccccccccceeccCceeecccc
Confidence 32211111112223345554443321 1111123334444555444421100 00011223
Q ss_pred CCCccccccc--cccccccccC-cccCCCCCcceEEEeccccccccccCCcccccccccCCeeEecc
Q 003890 711 QFPPTDMARI--LSQLIRQEFV-ESEMSLPLLQLLDLEESDEEDDERSDILEILQDINDFVHESEEA 774 (788)
Q Consensus 711 l~~~~~L~~L--~~~l~~~~lp-~~l~~l~~L~~L~L~~~~l~~~~~~~~l~~l~~L~~L~~L~L~~ 774 (788)
+..+.+|+.+ .+.+ ..++ ..|.++.+|+.++|.++ +... .-..+.++.+|+.+.+..
T Consensus 293 F~~~~~L~~i~l~~~i--~~I~~~aF~~c~~L~~i~lp~~-v~~I----~~~aF~~c~~L~~i~lp~ 352 (394)
T 4fs7_A 293 FYGCSSLTEVKLLDSV--KFIGEEAFESCTSLVSIDLPYL-VEEI----GKRSFRGCTSLSNINFPL 352 (394)
T ss_dssp TTTCTTCCEEEECTTC--CEECTTTTTTCTTCCEECCCTT-CCEE----CTTTTTTCTTCCEECCCT
T ss_pred cccccccccccccccc--ceechhhhcCCCCCCEEEeCCc-ccEE----hHHhccCCCCCCEEEECc
Confidence 4456677776 3344 4443 34567788999988654 4433 345677888888887753
No 183
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=97.48 E-value=0.00015 Score=75.76 Aligned_cols=125 Identities=14% Similarity=0.119 Sum_probs=68.8
Q ss_pred CcccchhcHHHHHHHHhcC-------------CCCcEEEEEEcCCCChHHHHHHHHHcccCcccccceeEEEEeCCCCCh
Q 003890 186 DISEFERGREELFDLLIEG-------------PSGLSVVAILNGSGFDKTAFAADTYNNNHIKFYFDCLAWVRVSIAYDS 252 (788)
Q Consensus 186 ~~vGr~~~~~~i~~~L~~~-------------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~ 252 (788)
+++|.+..++.|.+++... ......+.|+|.+|+|||++|+.+++...........-++.++..
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~--- 108 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRD--- 108 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGG---
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHH---
Confidence 4889999988888776421 233557889999999999999988773211111112223333311
Q ss_pred HHHHHHHHHHcCCCCCCcccccCCHHHHHHHHHHHhcCCcEEEEEeCCCC----------ChhhHHHHhhhcCCCCCCcE
Q 003890 253 GKILDDIIKSVMPPSRVSVIIGEDYKLKKTILRDYLTNKKYFIVLDDVFN----------DSDIWDDLEQVLPDNQNGSR 322 (788)
Q Consensus 253 ~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVLDdvw~----------~~~~~~~l~~~l~~~~~gsk 322 (788)
.+.... ...........+... +.-+|++|++.. .......+...+.....+..
T Consensus 109 ---------~l~~~~-----~g~~~~~~~~~~~~~---~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~ 171 (309)
T 3syl_A 109 ---------DLVGQY-----IGHTAPKTKEVLKRA---MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDDLV 171 (309)
T ss_dssp ---------GTCCSS-----TTCHHHHHHHHHHHH---TTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTTCE
T ss_pred ---------Hhhhhc-----ccccHHHHHHHHHhc---CCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCCEE
Confidence 111100 111112222222222 345999999951 22344555555555555677
Q ss_pred EEEecCCh
Q 003890 323 VLITVTDL 330 (788)
Q Consensus 323 IivTTR~~ 330 (788)
||.||...
T Consensus 172 ~i~~~~~~ 179 (309)
T 3syl_A 172 VILAGYAD 179 (309)
T ss_dssp EEEEECHH
T ss_pred EEEeCChH
Confidence 88887654
No 184
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=97.46 E-value=0.00044 Score=70.21 Aligned_cols=47 Identities=15% Similarity=0.124 Sum_probs=36.3
Q ss_pred CCCcccchhcHHHHHHHHh---cCC-------CCcEEEEEEcCCCChHHHHHHHHHc
Q 003890 184 RLDISEFERGREELFDLLI---EGP-------SGLSVVAILNGSGFDKTAFAADTYN 230 (788)
Q Consensus 184 ~~~~vGr~~~~~~i~~~L~---~~~-------~~~~vi~I~G~gGiGKTtLa~~v~~ 230 (788)
+.+++|.+..++.+.+++. ... ...+.+.|+|.+|+|||++|+.+++
T Consensus 5 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~ 61 (262)
T 2qz4_A 5 FKDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVAT 61 (262)
T ss_dssp TTSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHH
Confidence 3779999988888766653 211 2345677999999999999999998
No 185
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.42 E-value=0.0002 Score=69.69 Aligned_cols=61 Identities=16% Similarity=0.037 Sum_probs=39.6
Q ss_pred CCCcccch----hcHHHHHHHHhcCCCC--cEEEEEEcCCCChHHHHHHHHHcccCcccccceeEEEEe
Q 003890 184 RLDISEFE----RGREELFDLLIEGPSG--LSVVAILNGSGFDKTAFAADTYNNNHIKFYFDCLAWVRV 246 (788)
Q Consensus 184 ~~~~vGr~----~~~~~i~~~L~~~~~~--~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v 246 (788)
+.++++.+ ..++.+.+++...... ...+.|+|.+|+||||||+.+++. .......++|+++
T Consensus 24 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~~--~~~~~~~~~~~~~ 90 (202)
T 2w58_A 24 LSDVDLNDDGRIKAIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIANE--LAKRNVSSLIVYV 90 (202)
T ss_dssp TTSSCCSSHHHHHHHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHHH--HHTTTCCEEEEEH
T ss_pred HhhccCCChhHHHHHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHHH--HHHcCCeEEEEEh
Confidence 35666644 3445556666543221 268889999999999999999983 4333334666654
No 186
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=97.42 E-value=0.00021 Score=78.61 Aligned_cols=123 Identities=15% Similarity=0.201 Sum_probs=68.4
Q ss_pred CCcc-cchhc--HHHHHHHHhcCCCCcEEEEEEcCCCChHHHHHHHHHcccCcccccce--eEEEEeCCCCChHHHHHHH
Q 003890 185 LDIS-EFERG--REELFDLLIEGPSGLSVVAILNGSGFDKTAFAADTYNNNHIKFYFDC--LAWVRVSIAYDSGKILDDI 259 (788)
Q Consensus 185 ~~~v-Gr~~~--~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~--~~wv~vs~~~~~~~~~~~i 259 (788)
.+++ |.... ...+......... ...+.|+|.+|+||||||+.+++ .....|+. +++++. ..+..++
T Consensus 105 d~fv~g~~n~~a~~~~~~~a~~~~~-~~~lll~Gp~G~GKTtLa~aia~--~l~~~~~~~~v~~v~~------~~~~~~~ 175 (440)
T 2z4s_A 105 ENFVVGPGNSFAYHAALEVAKHPGR-YNPLFIYGGVGLGKTHLLQSIGN--YVVQNEPDLRVMYITS------EKFLNDL 175 (440)
T ss_dssp GGCCCCTTTHHHHHHHHHHHHSTTS-SCCEEEECSSSSSHHHHHHHHHH--HHHHHCCSSCEEEEEH------HHHHHHH
T ss_pred hhcCCCCchHHHHHHHHHHHhCCCC-CCeEEEECCCCCCHHHHHHHHHH--HHHHhCCCCeEEEeeH------HHHHHHH
Confidence 5555 64332 3344444433332 67789999999999999999998 45444433 444433 2334444
Q ss_pred HHHcCCCCCCcccccCCHHHHHHHHHHHhcCCcEEEEEeCCCC-Ch--hhHHHHhhhcCC-CCCCcEEEEecCC
Q 003890 260 IKSVMPPSRVSVIIGEDYKLKKTILRDYLTNKKYFIVLDDVFN-DS--DIWDDLEQVLPD-NQNGSRVLITVTD 329 (788)
Q Consensus 260 l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVLDdvw~-~~--~~~~~l~~~l~~-~~~gskIivTTR~ 329 (788)
...+.... . ..+.+.+..+.-+|++||+.. .. ..-+.+...+.. ...|..||+||.+
T Consensus 176 ~~~~~~~~---------~----~~~~~~~~~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~ 236 (440)
T 2z4s_A 176 VDSMKEGK---------L----NEFREKYRKKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDR 236 (440)
T ss_dssp HHHHHTTC---------H----HHHHHHHTTTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESS
T ss_pred HHHHHccc---------H----HHHHHHhcCCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 44443221 1 123334444677999999952 11 223334333321 1346788888875
No 187
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=97.37 E-value=0.00011 Score=67.29 Aligned_cols=46 Identities=15% Similarity=-0.018 Sum_probs=33.5
Q ss_pred CcccchhcHHHHHHHHhcCCCCcEEEEEEcCCCChHHHHHHHHHcc
Q 003890 186 DISEFERGREELFDLLIEGPSGLSVVAILNGSGFDKTAFAADTYNN 231 (788)
Q Consensus 186 ~~vGr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 231 (788)
+++|++..++++.+.+..-.....-|-|+|.+|+|||++|+.+++.
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~~~~~~vll~G~~GtGKt~lA~~i~~~ 50 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAAKRTSPVFLTGEAGSPFETVARYFHKN 50 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHHTCSSCEEEEEETTCCHHHHHGGGCCT
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHh
Confidence 5789999988888887542112234669999999999999999983
No 188
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=97.34 E-value=0.00074 Score=72.45 Aligned_cols=48 Identities=21% Similarity=0.210 Sum_probs=37.9
Q ss_pred CCCcccchhcHHH---HHHHHhcCCCCcEEEEEEcCCCChHHHHHHHHHcc
Q 003890 184 RLDISEFERGREE---LFDLLIEGPSGLSVVAILNGSGFDKTAFAADTYNN 231 (788)
Q Consensus 184 ~~~~vGr~~~~~~---i~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 231 (788)
+.+++|++..++. +.+.+..+....+.+-|+|++|+|||++|+.+.+.
T Consensus 43 ~~~ivG~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~ 93 (368)
T 3uk6_A 43 SQGMVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQA 93 (368)
T ss_dssp ETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHHH
T ss_pred hhhccChHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 3789999988776 45555555433468889999999999999999984
No 189
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.34 E-value=0.00098 Score=72.26 Aligned_cols=229 Identities=9% Similarity=0.004 Sum_probs=135.8
Q ss_pred ccccccccceEEecCCCCchhhhhhhhhhhcCCccccEEEecCCCCCCCC-ccccCCCCccEEEecCCCCcccChhhcCC
Q 003890 515 LEHSDIYLQSFLNHSSESDHLALIDCENFCEKFKHLRILNLGSAVLVQFP-PGLENLFHLKYLKLNIPSLKCLPSLLCTL 593 (788)
Q Consensus 515 ~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp-~~i~~L~~L~~L~L~~~~i~~lp~~i~~L 593 (788)
+.. |++|+.+.+.++.. . +....|.++.+|+.+.+..+ ++.++ ..+.++..|+.+.+..+. ..+.......
T Consensus 158 F~~-c~~L~~i~l~~~~~--~---I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~-~~i~~~~~~~ 229 (394)
T 4fs7_A 158 FAT-CESLEYVSLPDSME--T---LHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSL-YYLGDFALSK 229 (394)
T ss_dssp TTT-CTTCCEEECCTTCC--E---ECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTC-CEECTTTTTT
T ss_pred hcc-cCCCcEEecCCccc--e---eccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCc-eEeehhhccc
Confidence 555 78888888765432 1 23377888888888888765 44333 456677777777766543 3333344455
Q ss_pred CCCcEEEccCCCCcccch-hhhcccccceeeccCcc--CCCCCcCCcCccccccccccccccccCccccCCCCCCCeEEE
Q 003890 594 LNLQTLEMPSSYVDQSPE-DIWMMQKLMHLNFGSIT--LPAPPKNYSSSLKNLIFISTLNPSSCTPDILGRLPNVQTLRI 670 (788)
Q Consensus 594 ~~L~~L~L~~~~l~~lp~-~l~~L~~L~~L~l~~~~--~~~~i~~~~~~l~~L~~L~~~~~~~~~~~~l~~L~~L~~L~l 670 (788)
.+|+.+.+..+ +..+.. .+..+.+|+.+.+..+. +.. ..|..+..++.+...... -.-..+..+.+|+.+.+
T Consensus 230 ~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~~~i~~---~~F~~~~~l~~~~~~~~~-i~~~~F~~~~~L~~i~l 304 (394)
T 4fs7_A 230 TGVKNIIIPDS-FTELGKSVFYGCTDLESISIQNNKLRIGG---SLFYNCSGLKKVIYGSVI-VPEKTFYGCSSLTEVKL 304 (394)
T ss_dssp CCCCEEEECTT-CCEECSSTTTTCSSCCEEEECCTTCEECS---CTTTTCTTCCEEEECSSE-ECTTTTTTCTTCCEEEE
T ss_pred CCCceEEECCC-ceecccccccccccceeEEcCCCcceeec---cccccccccceeccCcee-ecccccccccccccccc
Confidence 67777777544 333433 46677778777775432 221 113555555554433211 11123567778888877
Q ss_pred EccCCcChhcHHHhccCCCCCCEEEeecCCCCCcccccccCCCccccccc--cccccccccC-cccCCCCCcceEEEecc
Q 003890 671 SGDLSCYHSGVSKSLCELHKLECLKLVNERKPSRMVLYEYQFPPTDMARI--LSQLIRQEFV-ESEMSLPLLQLLDLEES 747 (788)
Q Consensus 671 ~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~l~~~~~L~~L--~~~l~~~~lp-~~l~~l~~L~~L~L~~~ 747 (788)
...- ..--..+|.++.+|+.+.|.+.-.. .....+..+.+|+.+ -..+ ..++ ..|.++++|+.++|..+
T Consensus 305 ~~~i---~~I~~~aF~~c~~L~~i~lp~~v~~---I~~~aF~~c~~L~~i~lp~~l--~~I~~~aF~~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 305 LDSV---KFIGEEAFESCTSLVSIDLPYLVEE---IGKRSFRGCTSLSNINFPLSL--RKIGANAFQGCINLKKVELPKR 376 (394)
T ss_dssp CTTC---CEECTTTTTTCTTCCEECCCTTCCE---ECTTTTTTCTTCCEECCCTTC--CEECTTTBTTCTTCCEEEEEGG
T ss_pred cccc---ceechhhhcCCCCCCEEEeCCcccE---EhHHhccCCCCCCEEEECccc--cEehHHHhhCCCCCCEEEECCC
Confidence 5532 2222346778888999988643221 345567778888888 3345 4443 35678899999999766
Q ss_pred ccccccccCCcccccccccCCee
Q 003890 748 DEEDDERSDILEILQDINDFVHE 770 (788)
Q Consensus 748 ~l~~~~~~~~l~~l~~L~~L~~L 770 (788)
--. .--.+.+.++|+.+
T Consensus 377 ~~~------~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 377 LEQ------YRYDFEDTTKFKWI 393 (394)
T ss_dssp GGG------GGGGBCTTCEEEEE
T ss_pred CEE------hhheecCCCCCcEE
Confidence 322 12346667777654
No 190
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=97.34 E-value=0.00013 Score=72.92 Aligned_cols=61 Identities=7% Similarity=-0.064 Sum_probs=39.9
Q ss_pred CCCcccch---hcHHHHHHHHhcCCCCcEEEEEEcCCCChHHHHHHHHHcccCcccccceeEEEEeCC
Q 003890 184 RLDISEFE---RGREELFDLLIEGPSGLSVVAILNGSGFDKTAFAADTYNNNHIKFYFDCLAWVRVSI 248 (788)
Q Consensus 184 ~~~~vGr~---~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~ 248 (788)
+.+++|.+ ..++.+..+...+ ..+.+.|+|.+|+||||||+.+++. .......+.|+.++.
T Consensus 27 ~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~ll~G~~G~GKT~la~~l~~~--~~~~~~~~~~~~~~~ 90 (242)
T 3bos_A 27 FTSYYPAAGNDELIGALKSAASGD--GVQAIYLWGPVKSGRTHLIHAACAR--ANELERRSFYIPLGI 90 (242)
T ss_dssp TTTSCC--CCHHHHHHHHHHHHTC--SCSEEEEECSTTSSHHHHHHHHHHH--HHHTTCCEEEEEGGG
T ss_pred hhhccCCCCCHHHHHHHHHHHhCC--CCCeEEEECCCCCCHHHHHHHHHHH--HHHcCCeEEEEEHHH
Confidence 36777733 4455555555443 3567889999999999999999883 333333466766543
No 191
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=97.33 E-value=0.00022 Score=78.33 Aligned_cols=47 Identities=15% Similarity=0.058 Sum_probs=39.3
Q ss_pred CCCCCcccchhcH---HHHHHHHhcCCCCcEEEEEEcCCCChHHHHHHHHHc
Q 003890 182 QPRLDISEFERGR---EELFDLLIEGPSGLSVVAILNGSGFDKTAFAADTYN 230 (788)
Q Consensus 182 ~~~~~~vGr~~~~---~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 230 (788)
..+.+++|.+..+ ..+...+..+. ...+.++|.+|+||||||+.+.+
T Consensus 23 ~~l~~ivGq~~~~~~~~~L~~~i~~~~--~~~vLL~GppGtGKTtlAr~ia~ 72 (447)
T 3pvs_A 23 ENLAQYIGQQHLLAAGKPLPRAIEAGH--LHSMILWGPPGTGKTTLAEVIAR 72 (447)
T ss_dssp CSTTTCCSCHHHHSTTSHHHHHHHHTC--CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCHHHhCCcHHHHhchHHHHHHHHcCC--CcEEEEECCCCCcHHHHHHHHHH
Confidence 3447899998888 67777777665 57788999999999999999998
No 192
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=97.33 E-value=0.00019 Score=75.58 Aligned_cols=48 Identities=19% Similarity=0.133 Sum_probs=38.8
Q ss_pred CCCCcccchhcHHHHHHHHhcC---CCCcEEEEEEcCCCChHHHHHHHHHc
Q 003890 183 PRLDISEFERGREELFDLLIEG---PSGLSVVAILNGSGFDKTAFAADTYN 230 (788)
Q Consensus 183 ~~~~~vGr~~~~~~i~~~L~~~---~~~~~vi~I~G~gGiGKTtLa~~v~~ 230 (788)
.+.+++|++..++.+..++... ......+.|+|++|+|||++|+.+++
T Consensus 10 ~~~~~ig~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~ 60 (324)
T 1hqc_A 10 TLDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAH 60 (324)
T ss_dssp STTTCCSCHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHH
T ss_pred cHHHhhCHHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHH
Confidence 3478999999999988887531 12345788999999999999999988
No 193
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.33 E-value=0.00016 Score=68.05 Aligned_cols=79 Identities=13% Similarity=0.119 Sum_probs=33.0
Q ss_pred cccEEEecCCCCC-CCCccccCCCCccEEEecCCC-Cccc-ChhhcCC----CCCcEEEccCC-CCcccc-hhhhccccc
Q 003890 549 HLRILNLGSAVLV-QFPPGLENLFHLKYLKLNIPS-LKCL-PSLLCTL----LNLQTLEMPSS-YVDQSP-EDIWMMQKL 619 (788)
Q Consensus 549 ~L~~L~L~~~~l~-~lp~~i~~L~~L~~L~L~~~~-i~~l-p~~i~~L----~~L~~L~L~~~-~l~~lp-~~l~~L~~L 619 (788)
.|+.||+++|.++ .-...+.++++|++|+|++|. |+.- -..++.+ ++|++|+|++| .++.-- ..+.++++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L 141 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL 141 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence 3455555555443 111334445555555555543 3311 1122322 23555555555 333211 124445555
Q ss_pred ceeeccCc
Q 003890 620 MHLNFGSI 627 (788)
Q Consensus 620 ~~L~l~~~ 627 (788)
++|++++|
T Consensus 142 ~~L~L~~c 149 (176)
T 3e4g_A 142 KYLFLSDL 149 (176)
T ss_dssp CEEEEESC
T ss_pred CEEECCCC
Confidence 55555444
No 194
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.30 E-value=0.00044 Score=73.41 Aligned_cols=126 Identities=12% Similarity=0.095 Sum_probs=73.1
Q ss_pred ccccCCCCCCCCcccchhcHHHHHHHHhcCCCCcEEEEEEcCCCChHHHHHHHHHcccCccc-ccce-eEEEEeCCCCCh
Q 003890 175 IRLLSEGQPRLDISEFERGREELFDLLIEGPSGLSVVAILNGSGFDKTAFAADTYNNNHIKF-YFDC-LAWVRVSIAYDS 252 (788)
Q Consensus 175 ~~~~~~~~~~~~~vGr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-~F~~-~~wv~vs~~~~~ 252 (788)
+.....+..+.+++|.+..++.+...+..+. ...+.++|++|+||||+|+.+... +.. .+.. +.-++.+.....
T Consensus 15 ~~~k~rp~~~~~~~g~~~~~~~L~~~i~~g~--~~~~ll~Gp~G~GKTtla~~la~~--l~~~~~~~~~~~~~~~~~~~~ 90 (340)
T 1sxj_C 15 WVEKYRPETLDEVYGQNEVITTVRKFVDEGK--LPHLLFYGPPGTGKTSTIVALARE--IYGKNYSNMVLELNASDDRGI 90 (340)
T ss_dssp HHHHTCCSSGGGCCSCHHHHHHHHHHHHTTC--CCCEEEECSSSSSHHHHHHHHHHH--HHTTSHHHHEEEECTTSCCSH
T ss_pred hHHHhCCCcHHHhcCcHHHHHHHHHHHhcCC--CceEEEECCCCCCHHHHHHHHHHH--HcCCCccceEEEEcCcccccH
Confidence 3333334444778999888888888887664 333889999999999999999873 211 1111 222332222121
Q ss_pred HHHHHHHHHHcCCCCCCcccccCCHHHHHHHHHHH------hcCCcEEEEEeCCCC-ChhhHHHHhhhcCCCCCCcEEEE
Q 003890 253 GKILDDIIKSVMPPSRVSVIIGEDYKLKKTILRDY------LTNKKYFIVLDDVFN-DSDIWDDLEQVLPDNQNGSRVLI 325 (788)
Q Consensus 253 ~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~~------l~~kr~LlVLDdvw~-~~~~~~~l~~~l~~~~~gskIiv 325 (788)
+.+...+... +.+.+-++|+|++.. .....+.+...+......+++|+
T Consensus 91 -------------------------~~ir~~i~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il 145 (340)
T 1sxj_C 91 -------------------------DVVRNQIKDFASTRQIFSKGFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCV 145 (340)
T ss_dssp -------------------------HHHHTHHHHHHHBCCSSSCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEE
T ss_pred -------------------------HHHHHHHHHHHhhcccCCCCceEEEEeCCCCCCHHHHHHHHHHHhcCCCCeEEEE
Confidence 1111112111 123467899999842 34455556555544444667777
Q ss_pred ecCC
Q 003890 326 TVTD 329 (788)
Q Consensus 326 TTR~ 329 (788)
+|..
T Consensus 146 ~~n~ 149 (340)
T 1sxj_C 146 LANY 149 (340)
T ss_dssp EESC
T ss_pred EecC
Confidence 7654
No 195
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=97.26 E-value=0.0009 Score=68.45 Aligned_cols=47 Identities=19% Similarity=0.124 Sum_probs=35.1
Q ss_pred CCcccchhcHHHHHH-------HHhcC-CCCcEEEEEEcCCCChHHHHHHHHHcc
Q 003890 185 LDISEFERGREELFD-------LLIEG-PSGLSVVAILNGSGFDKTAFAADTYNN 231 (788)
Q Consensus 185 ~~~vGr~~~~~~i~~-------~L~~~-~~~~~vi~I~G~gGiGKTtLa~~v~~~ 231 (788)
..++|.....++++. .+... ......+-|+|.+|+|||+||+.+++.
T Consensus 33 ~~~i~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 33 NGIIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp TCCCCCSHHHHHHHHHHHHHHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred cCCCCccHHHHHHHHHHHHHHHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 457888777776666 33221 334678889999999999999999983
No 196
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=97.24 E-value=0.0007 Score=71.22 Aligned_cols=47 Identities=19% Similarity=0.206 Sum_probs=38.3
Q ss_pred CCCcccchhcHHHHHHHHhc----------CCCCcEEEEEEcCCCChHHHHHHHHHc
Q 003890 184 RLDISEFERGREELFDLLIE----------GPSGLSVVAILNGSGFDKTAFAADTYN 230 (788)
Q Consensus 184 ~~~~vGr~~~~~~i~~~L~~----------~~~~~~vi~I~G~gGiGKTtLa~~v~~ 230 (788)
+.+++|.+..++.+.+.+.. .....+-+-++|.+|+|||+||+.+++
T Consensus 17 ~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~ 73 (322)
T 3eie_A 17 WEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVAT 73 (322)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHH
T ss_pred HHHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHH
Confidence 37899999999999888731 112345788999999999999999998
No 197
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=97.22 E-value=0.0024 Score=66.97 Aligned_cols=48 Identities=19% Similarity=0.267 Sum_probs=38.3
Q ss_pred CCCcccchhcHHHHHHHHhc---------C-CCCcEEEEEEcCCCChHHHHHHHHHcc
Q 003890 184 RLDISEFERGREELFDLLIE---------G-PSGLSVVAILNGSGFDKTAFAADTYNN 231 (788)
Q Consensus 184 ~~~~vGr~~~~~~i~~~L~~---------~-~~~~~vi~I~G~gGiGKTtLa~~v~~~ 231 (788)
+.+++|.+..++.+.+.+.. + ....+-|-++|++|+|||+||+.+++.
T Consensus 11 ~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~ 68 (322)
T 1xwi_A 11 WSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATE 68 (322)
T ss_dssp GGGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHH
Confidence 37899999999988887732 1 123467889999999999999999983
No 198
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=97.18 E-value=0.00089 Score=70.88 Aligned_cols=48 Identities=15% Similarity=0.032 Sum_probs=40.0
Q ss_pred CCCCcccchhcHHHHHHHHhcC---CCCcEEEEEEcCCCChHHHHHHHHHc
Q 003890 183 PRLDISEFERGREELFDLLIEG---PSGLSVVAILNGSGFDKTAFAADTYN 230 (788)
Q Consensus 183 ~~~~~vGr~~~~~~i~~~L~~~---~~~~~vi~I~G~gGiGKTtLa~~v~~ 230 (788)
.+.+++|++..++.+..++... ......+-|+|.+|+|||++|+.+.+
T Consensus 27 ~~~~iiG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~ 77 (338)
T 3pfi_A 27 NFDGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISY 77 (338)
T ss_dssp SGGGCCSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHH
T ss_pred CHHHhCChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHH
Confidence 4478999999999999988642 23455688999999999999999987
No 199
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=97.16 E-value=0.00074 Score=72.09 Aligned_cols=46 Identities=13% Similarity=0.106 Sum_probs=38.1
Q ss_pred CCcccchhcHHHHHHHHhc----------CCCCcEEEEEEcCCCChHHHHHHHHHc
Q 003890 185 LDISEFERGREELFDLLIE----------GPSGLSVVAILNGSGFDKTAFAADTYN 230 (788)
Q Consensus 185 ~~~vGr~~~~~~i~~~L~~----------~~~~~~vi~I~G~gGiGKTtLa~~v~~ 230 (788)
.+++|.+..++.+.+.+.. .....+.+.|+|.+|+|||+||+.+++
T Consensus 84 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~ 139 (357)
T 3d8b_A 84 EDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIAS 139 (357)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHH
T ss_pred HHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHH
Confidence 7899999999999888742 112356788999999999999999998
No 200
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.14 E-value=0.0014 Score=68.12 Aligned_cols=47 Identities=26% Similarity=0.204 Sum_probs=38.5
Q ss_pred CCcccchhcHHHHHHHHhcC-----------CCCcEEEEEEcCCCChHHHHHHHHHcc
Q 003890 185 LDISEFERGREELFDLLIEG-----------PSGLSVVAILNGSGFDKTAFAADTYNN 231 (788)
Q Consensus 185 ~~~vGr~~~~~~i~~~L~~~-----------~~~~~vi~I~G~gGiGKTtLa~~v~~~ 231 (788)
.+++|.+..++++.+.+... -...+.+.++|++|+|||+||+.+++.
T Consensus 15 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~ 72 (301)
T 3cf0_A 15 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANE 72 (301)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHH
Confidence 78999999999888877531 123567889999999999999999983
No 201
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=97.08 E-value=0.0018 Score=70.04 Aligned_cols=47 Identities=17% Similarity=0.152 Sum_probs=38.3
Q ss_pred CCCcccchhcHHHHHHHHhcC----------CCCcEEEEEEcCCCChHHHHHHHHHc
Q 003890 184 RLDISEFERGREELFDLLIEG----------PSGLSVVAILNGSGFDKTAFAADTYN 230 (788)
Q Consensus 184 ~~~~vGr~~~~~~i~~~L~~~----------~~~~~vi~I~G~gGiGKTtLa~~v~~ 230 (788)
+.+++|.+..++.+.+++... ....+-+-|+|.+|+|||+||+.+++
T Consensus 114 ~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~ 170 (389)
T 3vfd_A 114 FDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAA 170 (389)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHH
T ss_pred hHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHH
Confidence 488999999999998887321 11246788999999999999999987
No 202
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=97.08 E-value=0.003 Score=65.53 Aligned_cols=117 Identities=5% Similarity=-0.039 Sum_probs=71.7
Q ss_pred chhcHHHHHHHHhcCCCCcEEEEEEcCCCChHHHHHHHHHccc-CcccccceeEEEEeCC-CCChHHHHHHHHHHcCCCC
Q 003890 190 FERGREELFDLLIEGPSGLSVVAILNGSGFDKTAFAADTYNNN-HIKFYFDCLAWVRVSI-AYDSGKILDDIIKSVMPPS 267 (788)
Q Consensus 190 r~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~-~~~~~F~~~~wv~vs~-~~~~~~~~~~il~~l~~~~ 267 (788)
-++.++.+.+.+..+. ....-++|++|+||||+|+.+.+.. .....++...++..+. ...+.. .+++.+.+....
T Consensus 2 ~~~~~~~L~~~i~~~~--~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~~~~~id~-ir~li~~~~~~p 78 (305)
T 2gno_A 2 AKDQLETLKRIIEKSE--GISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGENIGIDD-IRTIKDFLNYSP 78 (305)
T ss_dssp --CHHHHHHHHHHTCS--SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSSCBCHHH-HHHHHHHHTSCC
T ss_pred hHHHHHHHHHHHHCCC--CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCcCCCCHHH-HHHHHHHHhhcc
Confidence 3455667777776655 6788899999999999999997631 1111223345554432 222222 234444443221
Q ss_pred CCcccccCCHHHHHHHHHHHhcCCcEEEEEeCCCC-ChhhHHHHhhhcCCCCCCcEEEEecCC
Q 003890 268 RVSVIIGEDYKLKKTILRDYLTNKKYFIVLDDVFN-DSDIWDDLEQVLPDNQNGSRVLITVTD 329 (788)
Q Consensus 268 ~~~~~~~~~~~~~~~~l~~~l~~kr~LlVLDdvw~-~~~~~~~l~~~l~~~~~gskIivTTR~ 329 (788)
. .+++-++|+|++.. .....+.+...+....+.+.+|++|.+
T Consensus 79 ~--------------------~~~~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~~ 121 (305)
T 2gno_A 79 E--------------------LYTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRR 121 (305)
T ss_dssp S--------------------SSSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESC
T ss_pred c--------------------cCCceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECC
Confidence 1 25677899999952 456677777777666667887777654
No 203
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=97.06 E-value=0.00076 Score=70.97 Aligned_cols=47 Identities=17% Similarity=0.003 Sum_probs=31.8
Q ss_pred CCcc-cch--hcHHHHHHHHhcCCCCcEEEEEEcCCCChHHHHHHHHHcc
Q 003890 185 LDIS-EFE--RGREELFDLLIEGPSGLSVVAILNGSGFDKTAFAADTYNN 231 (788)
Q Consensus 185 ~~~v-Gr~--~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 231 (788)
.+++ |.. .....+..++..+......+.|+|++|+||||||+.+++.
T Consensus 11 ~~fv~g~~~~~a~~~~~~~~~~~~~~~~~lll~G~~GtGKT~la~~i~~~ 60 (324)
T 1l8q_A 11 ENFIVGEGNRLAYEVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNE 60 (324)
T ss_dssp SSCCCCTTTHHHHHHHHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHHH
T ss_pred ccCCCCCcHHHHHHHHHHHHhCcCCCCCeEEEECCCCCcHHHHHHHHHHH
Confidence 5565 532 2334455544443324567889999999999999999983
No 204
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.05 E-value=0.0067 Score=65.59 Aligned_cols=123 Identities=10% Similarity=0.066 Sum_probs=73.7
Q ss_pred cCccccccccccccccc-cCccccCCCCCCCeEEEEccCCcChhcHHHhccCCCCCCEEEeecCCCCCcccccccCCCcc
Q 003890 637 SSSLKNLIFISTLNPSS-CTPDILGRLPNVQTLRISGDLSCYHSGVSKSLCELHKLECLKLVNERKPSRMVLYEYQFPPT 715 (788)
Q Consensus 637 ~~~l~~L~~L~~~~~~~-~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~l~~~~ 715 (788)
|..+.+|+.+.+.+... -....+.++++|+.+.+...- ..--...|.++.+|+.+.|..+-.. ..-..+..+.
T Consensus 261 F~~c~~L~~i~lp~~~~~I~~~aF~~c~~L~~i~l~~~i---~~I~~~aF~~c~~L~~i~lp~~v~~---I~~~aF~~C~ 334 (394)
T 4gt6_A 261 FDSCAYLASVKMPDSVVSIGTGAFMNCPALQDIEFSSRI---TELPESVFAGCISLKSIDIPEGITQ---ILDDAFAGCE 334 (394)
T ss_dssp TTTCSSCCEEECCTTCCEECTTTTTTCTTCCEEECCTTC---CEECTTTTTTCTTCCEEECCTTCCE---ECTTTTTTCT
T ss_pred eeecccccEEecccccceecCcccccccccccccCCCcc---cccCceeecCCCCcCEEEeCCcccE---ehHhHhhCCC
Confidence 45556666655432211 112236778889988875431 2222356888999999999743222 3456788899
Q ss_pred ccccc--cccccccccC-cccCCCCCcceEEEeccccccccccCCcccccccccCCeeEecc
Q 003890 716 DMARI--LSQLIRQEFV-ESEMSLPLLQLLDLEESDEEDDERSDILEILQDINDFVHESEEA 774 (788)
Q Consensus 716 ~L~~L--~~~l~~~~lp-~~l~~l~~L~~L~L~~~~l~~~~~~~~l~~l~~L~~L~~L~L~~ 774 (788)
+|+.+ -..+ ..++ ..|.++++|+.+++.++... ...+....+|+.+.+..
T Consensus 335 ~L~~i~ip~sv--~~I~~~aF~~C~~L~~i~~~~~~~~-------~~~~~~~~~L~~i~i~~ 387 (394)
T 4gt6_A 335 QLERIAIPSSV--TKIPESAFSNCTALNNIEYSGSRSQ-------WNAISTDSGLQNLPVAP 387 (394)
T ss_dssp TCCEEEECTTC--CBCCGGGGTTCTTCCEEEESSCHHH-------HHTCBCCCCC-------
T ss_pred CCCEEEECccc--CEEhHhHhhCCCCCCEEEECCceee-------hhhhhccCCCCEEEeCC
Confidence 99998 3445 4553 35678999999999987643 23455667777777643
No 205
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=97.03 E-value=0.0027 Score=69.78 Aligned_cols=48 Identities=17% Similarity=0.210 Sum_probs=38.6
Q ss_pred CCCcccchhcHHHHHHHHhc----C------CCCcEEEEEEcCCCChHHHHHHHHHcc
Q 003890 184 RLDISEFERGREELFDLLIE----G------PSGLSVVAILNGSGFDKTAFAADTYNN 231 (788)
Q Consensus 184 ~~~~vGr~~~~~~i~~~L~~----~------~~~~~vi~I~G~gGiGKTtLa~~v~~~ 231 (788)
+.+++|.+..++.+.+.+.. . ....+-|-++|++|+|||+||+.+++.
T Consensus 133 ~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~ 190 (444)
T 2zan_A 133 WSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATE 190 (444)
T ss_dssp GGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 37899999999999887731 0 123467889999999999999999983
No 206
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.02 E-value=0.0013 Score=66.59 Aligned_cols=49 Identities=20% Similarity=0.214 Sum_probs=36.1
Q ss_pred CCCCcccchhcHHHHHHHHh---cCC-------CCcEEEEEEcCCCChHHHHHHHHHcc
Q 003890 183 PRLDISEFERGREELFDLLI---EGP-------SGLSVVAILNGSGFDKTAFAADTYNN 231 (788)
Q Consensus 183 ~~~~~vGr~~~~~~i~~~L~---~~~-------~~~~vi~I~G~gGiGKTtLa~~v~~~ 231 (788)
.+.+++|.+..++++.+.+. ... ...+-+.|+|.+|+||||||+.+++.
T Consensus 10 ~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~ 68 (257)
T 1lv7_A 10 TFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGE 68 (257)
T ss_dssp CGGGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CHHHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHH
Confidence 34789999988887766542 210 12345789999999999999999983
No 207
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=97.02 E-value=0.0038 Score=65.84 Aligned_cols=115 Identities=10% Similarity=0.030 Sum_probs=65.6
Q ss_pred hhcHHHHHHHHhcCCCCcEEEEEEcCCCChHHHHHHHHHcccCccc--------------------ccceeEEEEeCCCC
Q 003890 191 ERGREELFDLLIEGPSGLSVVAILNGSGFDKTAFAADTYNNNHIKF--------------------YFDCLAWVRVSIAY 250 (788)
Q Consensus 191 ~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~--------------------~F~~~~wv~vs~~~ 250 (788)
++..+.+.+.+..+. -...+-++|..|+||||+|+.+.+.-.-.. +++ ..++.....
T Consensus 8 ~~~~~~l~~~i~~~~-~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d-~~~~~~~~~- 84 (334)
T 1a5t_A 8 RPDFEKLVASYQAGR-GHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPD-YYTLAPEKG- 84 (334)
T ss_dssp HHHHHHHHHHHHTTC-CCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTT-EEEECCCTT-
T ss_pred HHHHHHHHHHHHcCC-cceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCC-EEEEecccc-
Confidence 444566666665543 345788999999999999998876311000 111 222221100
Q ss_pred ChHHHHHHHHHHcCCCCCCcccccCCHHHHHHHHHHHh-----cCCcEEEEEeCCCC-ChhhHHHHhhhcCCCCCCcEEE
Q 003890 251 DSGKILDDIIKSVMPPSRVSVIIGEDYKLKKTILRDYL-----TNKKYFIVLDDVFN-DSDIWDDLEQVLPDNQNGSRVL 324 (788)
Q Consensus 251 ~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~~l-----~~kr~LlVLDdvw~-~~~~~~~l~~~l~~~~~gskIi 324 (788)
. .....+++.+. .+.+ .+++-++|+|++.. .....+.+...+.....++.+|
T Consensus 85 -----------------~----~~~~i~~ir~l-~~~~~~~~~~~~~kvviIdead~l~~~a~naLLk~lEep~~~~~~I 142 (334)
T 1a5t_A 85 -----------------K----NTLGVDAVREV-TEKLNEHARLGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFF 142 (334)
T ss_dssp -----------------C----SSBCHHHHHHH-HHHTTSCCTTSSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEE
T ss_pred -----------------C----CCCCHHHHHHH-HHHHhhccccCCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEEE
Confidence 0 11222332222 2222 35678899999962 3456677777776656677877
Q ss_pred EecCCh
Q 003890 325 ITVTDL 330 (788)
Q Consensus 325 vTTR~~ 330 (788)
++|.+.
T Consensus 143 l~t~~~ 148 (334)
T 1a5t_A 143 LATREP 148 (334)
T ss_dssp EEESCG
T ss_pred EEeCCh
Confidence 777654
No 208
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=96.94 E-value=0.0015 Score=67.62 Aligned_cols=47 Identities=17% Similarity=0.187 Sum_probs=38.3
Q ss_pred CCCcccchhcHHHHHHHHhcC----------CCCcEEEEEEcCCCChHHHHHHHHHc
Q 003890 184 RLDISEFERGREELFDLLIEG----------PSGLSVVAILNGSGFDKTAFAADTYN 230 (788)
Q Consensus 184 ~~~~vGr~~~~~~i~~~L~~~----------~~~~~vi~I~G~gGiGKTtLa~~v~~ 230 (788)
+.+++|.+..++.+.+.+... ....+.+.|+|++|+||||+|+.+++
T Consensus 20 ~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~ 76 (297)
T 3b9p_A 20 WTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVAT 76 (297)
T ss_dssp GGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHH
T ss_pred HHHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHH
Confidence 378999999999998877431 11356788999999999999999998
No 209
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.94 E-value=0.00093 Score=75.13 Aligned_cols=57 Identities=11% Similarity=-0.007 Sum_probs=44.0
Q ss_pred ccccCCCCCCCCcccchhcHHHHHHHHhcCC---------------CCcEEEEEEcCCCChHHHHHHHHHcc
Q 003890 175 IRLLSEGQPRLDISEFERGREELFDLLIEGP---------------SGLSVVAILNGSGFDKTAFAADTYNN 231 (788)
Q Consensus 175 ~~~~~~~~~~~~~vGr~~~~~~i~~~L~~~~---------------~~~~vi~I~G~gGiGKTtLa~~v~~~ 231 (788)
|.....+..+.+++|++..++++.+++.... ...+.+.|+|++|+||||+|+.+++.
T Consensus 29 W~ekyrP~~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~ 100 (516)
T 1sxj_A 29 WTVKYAPTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQE 100 (516)
T ss_dssp HHHHTCCSSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHH
T ss_pred cccccCCCCHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3333334444889999999999999997510 13468899999999999999999983
No 210
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=96.93 E-value=0.00067 Score=70.86 Aligned_cols=63 Identities=10% Similarity=0.071 Sum_probs=43.7
Q ss_pred CCcccchhcHHHHHHHHhcC-------CCCcEEEEEEcCCCChHHHHHHHHHcccCcccccceeEEEEeCCC
Q 003890 185 LDISEFERGREELFDLLIEG-------PSGLSVVAILNGSGFDKTAFAADTYNNNHIKFYFDCLAWVRVSIA 249 (788)
Q Consensus 185 ~~~vGr~~~~~~i~~~L~~~-------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~ 249 (788)
..++|.+..++.+...+... ......+.++|.+|+||||+|+.++.. ....-...+.+.++..
T Consensus 17 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~--~~~~~~~~~~~~~~~~ 86 (311)
T 4fcw_A 17 KRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAAT--LFDTEEAMIRIDMTEY 86 (311)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHH--HHSCGGGEEEEEGGGC
T ss_pred hhcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHH--HcCCCcceEEeecccc
Confidence 34789999988888887643 122468999999999999999999983 3222122455555543
No 211
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=96.91 E-value=0.0007 Score=68.97 Aligned_cols=47 Identities=13% Similarity=-0.032 Sum_probs=34.1
Q ss_pred CCcccchhcHHHHHHHHhcCCCCcEEEEEEcCCCChHHHHHHHHHcc
Q 003890 185 LDISEFERGREELFDLLIEGPSGLSVVAILNGSGFDKTAFAADTYNN 231 (788)
Q Consensus 185 ~~~vGr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 231 (788)
..++|.+..+.++.+.+..-......|-|+|.+|+|||++|+.+++.
T Consensus 6 ~~~ig~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKt~la~~i~~~ 52 (265)
T 2bjv_A 6 DNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYL 52 (265)
T ss_dssp ----CCCHHHHHHHHHHHHHTTSCSCEEEECCTTSCHHHHHHHHHHT
T ss_pred ccceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHh
Confidence 56899999999888877542222345679999999999999999983
No 212
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=96.90 E-value=0.0018 Score=69.03 Aligned_cols=48 Identities=19% Similarity=0.194 Sum_probs=37.8
Q ss_pred CCCcccchhcHHHHHHHHhcC----------CCCcEEEEEEcCCCChHHHHHHHHHcc
Q 003890 184 RLDISEFERGREELFDLLIEG----------PSGLSVVAILNGSGFDKTAFAADTYNN 231 (788)
Q Consensus 184 ~~~~vGr~~~~~~i~~~L~~~----------~~~~~vi~I~G~gGiGKTtLa~~v~~~ 231 (788)
+.+++|.+..++.|.+.+... ....+-|-++|++|+|||+||+.+++.
T Consensus 50 ~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~ 107 (355)
T 2qp9_X 50 WEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATE 107 (355)
T ss_dssp GGGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHH
Confidence 378999999999998877311 112345789999999999999999983
No 213
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=96.85 E-value=0.00071 Score=62.22 Aligned_cols=24 Identities=8% Similarity=0.050 Sum_probs=21.8
Q ss_pred cEEEEEEcCCCChHHHHHHHHHcc
Q 003890 208 LSVVAILNGSGFDKTAFAADTYNN 231 (788)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~~ 231 (788)
-..++|+|..|+|||||++.++..
T Consensus 36 g~~~~l~G~~G~GKTtL~~~i~~~ 59 (149)
T 2kjq_A 36 GQFIYVWGEEGAGKSHLLQAWVAQ 59 (149)
T ss_dssp CSEEEEESSSTTTTCHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 568999999999999999999984
No 214
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=96.79 E-value=0.0017 Score=72.05 Aligned_cols=44 Identities=14% Similarity=0.150 Sum_probs=38.0
Q ss_pred CCcccchhcHHHHHHHHhcCCCCcEEEEEEcCCCChHHHHHHHHHc
Q 003890 185 LDISEFERGREELFDLLIEGPSGLSVVAILNGSGFDKTAFAADTYN 230 (788)
Q Consensus 185 ~~~vGr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 230 (788)
..++||+.+++.+++.|.... ..-+-++|.+|+|||++|+.++.
T Consensus 180 d~iiGr~~~i~~l~~~l~r~~--~~~~LL~G~pG~GKT~la~~la~ 223 (468)
T 3pxg_A 180 DPVIGRSKEIQRVIEVLSRRT--KNNPVLIGEPGVGKTAIAEGLAQ 223 (468)
T ss_dssp CCCCCCHHHHHHHHHHHHCSS--SCEEEEESCTTTTTHHHHHHHHH
T ss_pred CCccCcHHHHHHHHHHHhccC--CCCeEEECCCCCCHHHHHHHHHH
Confidence 679999999999999997643 33456899999999999999987
No 215
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=96.72 E-value=0.0015 Score=68.02 Aligned_cols=46 Identities=15% Similarity=0.056 Sum_probs=36.9
Q ss_pred CcccchhcHHHHHHHHhcCCCCcEEEEEEcCCCChHHHHHHHHHcc
Q 003890 186 DISEFERGREELFDLLIEGPSGLSVVAILNGSGFDKTAFAADTYNN 231 (788)
Q Consensus 186 ~~vGr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 231 (788)
.++|....+.++.+.+..-......|-|+|.+|+|||++|+.+++.
T Consensus 3 ~iig~s~~~~~~~~~~~~~a~~~~~vLi~Ge~GtGKt~lAr~i~~~ 48 (304)
T 1ojl_A 3 HMIGSSPAMQHLLNEIAMVAPSDATVLIHGDSGTGKELVARALHAC 48 (304)
T ss_dssp CCCCCSHHHHHHHHHHHHHCSTTSCEEEESCTTSCHHHHHHHHHHH
T ss_pred CcEECCHHHHHHHHHHHHHhCCCCcEEEECCCCchHHHHHHHHHHh
Confidence 5889999999998888653222345669999999999999999983
No 216
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=96.61 E-value=0.0047 Score=67.93 Aligned_cols=94 Identities=14% Similarity=0.134 Sum_probs=56.1
Q ss_pred CCCcccchhcHHHHHHHHh---cC-------CCCcEEEEEEcCCCChHHHHHHHHHcccCcccccceeEEEEeCCCCChH
Q 003890 184 RLDISEFERGREELFDLLI---EG-------PSGLSVVAILNGSGFDKTAFAADTYNNNHIKFYFDCLAWVRVSIAYDSG 253 (788)
Q Consensus 184 ~~~~vGr~~~~~~i~~~L~---~~-------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~ 253 (788)
|.+++|.+..++++.+.+. .. -...+-|.++|++|+||||||+.+++. ....| +.++.+.-...
T Consensus 15 f~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~--~~~~f---~~is~~~~~~~- 88 (476)
T 2ce7_A 15 FKDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGE--ANVPF---FHISGSDFVEL- 88 (476)
T ss_dssp GGGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHH--HTCCE---EEEEGGGTTTC-
T ss_pred HHHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHH--cCCCe---eeCCHHHHHHH-
Confidence 3789999988777766543 21 011234779999999999999999983 33222 33333322110
Q ss_pred HHHHHHHHHcCCCCCCcccccCCHHHHHHHHHHHhcCCcEEEEEeCCC
Q 003890 254 KILDDIIKSVMPPSRVSVIIGEDYKLKKTILRDYLTNKKYFIVLDDVF 301 (788)
Q Consensus 254 ~~~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVLDdvw 301 (788)
+ ...........+.....+.+.+|++|++.
T Consensus 89 ---------~---------~g~~~~~~r~lf~~A~~~~p~ILfIDEid 118 (476)
T 2ce7_A 89 ---------F---------VGVGAARVRDLFAQAKAHAPCIVFIDEID 118 (476)
T ss_dssp ---------C---------TTHHHHHHHHHHHHHHHTCSEEEEEETGG
T ss_pred ---------H---------hcccHHHHHHHHHHHHhcCCCEEEEechh
Confidence 0 01111223334444455678999999994
No 217
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=96.58 E-value=0.0015 Score=66.64 Aligned_cols=47 Identities=21% Similarity=0.236 Sum_probs=36.0
Q ss_pred CCcccchhcHHHHHHHHhc----------CCCCcEEEEEEcCCCChHHHHHHHHHcc
Q 003890 185 LDISEFERGREELFDLLIE----------GPSGLSVVAILNGSGFDKTAFAADTYNN 231 (788)
Q Consensus 185 ~~~vGr~~~~~~i~~~L~~----------~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 231 (788)
.+++|.+..++.+.+.+.. +....+-+.|+|.+|+|||+||+.+++.
T Consensus 11 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~ 67 (268)
T 2r62_A 11 KDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGE 67 (268)
T ss_dssp TTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHH
T ss_pred HHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHH
Confidence 7899999998888876641 1111233679999999999999999983
No 218
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=96.57 E-value=0.0019 Score=66.52 Aligned_cols=68 Identities=12% Similarity=0.102 Sum_probs=46.3
Q ss_pred cEEEEEEcCCCChHHHHHHHHHcccCcccccceeEEEEe--CCCCChHHHHHHHHHHcCCCCCCcccccCCHHHHHHHHH
Q 003890 208 LSVVAILNGSGFDKTAFAADTYNNNHIKFYFDCLAWVRV--SIAYDSGKILDDIIKSVMPPSRVSVIIGEDYKLKKTILR 285 (788)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v--s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~l~ 285 (788)
-+++.|+|++|+||||||.++... .-..++|++. .+..+. ...+.+.....+.
T Consensus 123 gsviLI~GpPGsGKTtLAlqlA~~-----~G~~VlyIs~~~eE~v~~--------------------~~~~le~~l~~i~ 177 (331)
T 2vhj_A 123 SGMVIVTGKGNSGKTPLVHALGEA-----LGGKDKYATVRFGEPLSG--------------------YNTDFNVFVDDIA 177 (331)
T ss_dssp SEEEEEECSCSSSHHHHHHHHHHH-----HHTTSCCEEEEBSCSSTT--------------------CBCCHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHh-----CCCCEEEEEecchhhhhh--------------------hhcCHHHHHHHHH
Confidence 456789999999999999999873 1123567766 332111 0134566666677
Q ss_pred HHhcCCcEEEEEeCCC
Q 003890 286 DYLTNKKYFIVLDDVF 301 (788)
Q Consensus 286 ~~l~~kr~LlVLDdvw 301 (788)
+.+...+ +||+|++.
T Consensus 178 ~~l~~~~-LLVIDsI~ 192 (331)
T 2vhj_A 178 RAMLQHR-VIVIDSLK 192 (331)
T ss_dssp HHHHHCS-EEEEECCT
T ss_pred HHHhhCC-EEEEeccc
Confidence 7776666 99999996
No 219
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=96.45 E-value=0.0041 Score=68.95 Aligned_cols=46 Identities=15% Similarity=0.094 Sum_probs=37.8
Q ss_pred CCcccchhcHHHHHHHHhcC-----------CCCcEEEEEEcCCCChHHHHHHHHHc
Q 003890 185 LDISEFERGREELFDLLIEG-----------PSGLSVVAILNGSGFDKTAFAADTYN 230 (788)
Q Consensus 185 ~~~vGr~~~~~~i~~~L~~~-----------~~~~~vi~I~G~gGiGKTtLa~~v~~ 230 (788)
.+++|.+..++++.+++... -...+-+-|+|.+|+|||++|+.+++
T Consensus 204 ~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~ 260 (489)
T 3hu3_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVAN 260 (489)
T ss_dssp GGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHH
Confidence 67999999999988877531 22345688999999999999999988
No 220
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=96.44 E-value=0.076 Score=56.73 Aligned_cols=102 Identities=14% Similarity=0.080 Sum_probs=58.8
Q ss_pred cCCCCCCCeEEEEccCCcChhcHHHhccCCCCCCEEEeecCCCCCcccccccCCCccccccc---cccccccccC-cccC
Q 003890 659 LGRLPNVQTLRISGDLSCYHSGVSKSLCELHKLECLKLVNERKPSRMVLYEYQFPPTDMARI---LSQLIRQEFV-ESEM 734 (788)
Q Consensus 659 l~~L~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~l~~~~~L~~L---~~~l~~~~lp-~~l~ 734 (788)
+..+.+|+.+.+...- ..--...+.++.+|+.+.+.+.-.. .....+..+.+|+.+ .+.+ ..++ ..|.
T Consensus 236 f~~~~~L~~i~lp~~v---~~I~~~aF~~~~~l~~i~l~~~i~~---i~~~aF~~c~~L~~i~l~~~~i--~~I~~~aF~ 307 (379)
T 4h09_A 236 FYGMKALDEIAIPKNV---TSIGSFLLQNCTALKTLNFYAKVKT---VPYLLCSGCSNLTKVVMDNSAI--ETLEPRVFM 307 (379)
T ss_dssp TTTCSSCCEEEECTTC---CEECTTTTTTCTTCCEEEECCCCSE---ECTTTTTTCTTCCEEEECCTTC--CEECTTTTT
T ss_pred ccCCccceEEEcCCCc---cEeCccccceeehhcccccccccee---cccccccccccccccccccccc--ceehhhhhc
Confidence 4455666666654331 1112235566677777777632221 234456667788877 2345 4443 3456
Q ss_pred CCCCcceEEEeccccccccccCCcccccccccCCeeEec
Q 003890 735 SLPLLQLLDLEESDEEDDERSDILEILQDINDFVHESEE 773 (788)
Q Consensus 735 ~l~~L~~L~L~~~~l~~~~~~~~l~~l~~L~~L~~L~L~ 773 (788)
++.+|+.+.|..+ +... .-..+.++.+|+.+.+.
T Consensus 308 ~c~~L~~i~lp~~-l~~I----~~~aF~~C~~L~~i~ip 341 (379)
T 4h09_A 308 DCVKLSSVTLPTA-LKTI----QVYAFKNCKALSTISYP 341 (379)
T ss_dssp TCTTCCEEECCTT-CCEE----CTTTTTTCTTCCCCCCC
T ss_pred CCCCCCEEEcCcc-ccEE----HHHHhhCCCCCCEEEEC
Confidence 7788888888654 3333 34457777888887774
No 221
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=96.40 E-value=0.0037 Score=74.77 Aligned_cols=45 Identities=11% Similarity=0.152 Sum_probs=38.7
Q ss_pred CCcccchhcHHHHHHHHhcCCCCcEEEEEEcCCCChHHHHHHHHHcc
Q 003890 185 LDISEFERGREELFDLLIEGPSGLSVVAILNGSGFDKTAFAADTYNN 231 (788)
Q Consensus 185 ~~~vGr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 231 (788)
..++||+.+++.+++.|.... ..-+.++|.+|+||||+|+.+++.
T Consensus 170 d~viGr~~~i~~l~~~l~~~~--~~~vlL~G~pG~GKT~la~~la~~ 214 (854)
T 1qvr_A 170 DPVIGRDEEIRRVIQILLRRT--KNNPVLIGEPGVGKTAIVEGLAQR 214 (854)
T ss_dssp CCCCSCHHHHHHHHHHHHCSS--CCCCEEEECTTSCHHHHHHHHHHH
T ss_pred cccCCcHHHHHHHHHHHhcCC--CCceEEEcCCCCCHHHHHHHHHHH
Confidence 679999999999999997654 344678999999999999999873
No 222
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=96.37 E-value=0.019 Score=67.88 Aligned_cols=44 Identities=20% Similarity=0.114 Sum_probs=38.3
Q ss_pred CCcccchhcHHHHHHHHhcCCCCcEEEEEEcCCCChHHHHHHHHHc
Q 003890 185 LDISEFERGREELFDLLIEGPSGLSVVAILNGSGFDKTAFAADTYN 230 (788)
Q Consensus 185 ~~~vGr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 230 (788)
..++||+.+++.+++.|.... ..-+.++|.+|+||||+|+.+.+
T Consensus 186 d~~iGr~~~i~~l~~~l~~~~--~~~vlL~G~~GtGKT~la~~la~ 229 (758)
T 1r6b_X 186 DPLIGREKELERAIQVLCRRR--KNNPLLVGESGVGKTAIAEGLAW 229 (758)
T ss_dssp CCCCSCHHHHHHHHHHHTSSS--SCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCccCCHHHHHHHHHHHhccC--CCCeEEEcCCCCCHHHHHHHHHH
Confidence 679999999999999997653 44567999999999999999987
No 223
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.37 E-value=0.01 Score=58.13 Aligned_cols=88 Identities=10% Similarity=0.036 Sum_probs=52.0
Q ss_pred cEEEEEEcCCCChHHHHHHHHHcccCcccccceeEEEEeCCCCChHHHHHHHHHHcCCCCCC--------cccccCCHHH
Q 003890 208 LSVVAILNGSGFDKTAFAADTYNNNHIKFYFDCLAWVRVSIAYDSGKILDDIIKSVMPPSRV--------SVIIGEDYKL 279 (788)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~~l~~~~~~--------~~~~~~~~~~ 279 (788)
-.++.|+|.+|+||||||..+.. . .=..++|++....++..++.. +....+..... ..........
T Consensus 20 G~~~~i~G~~GsGKTtl~~~l~~--~---~~~~v~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (220)
T 2cvh_A 20 GVLTQVYGPYASGKTTLALQTGL--L---SGKKVAYVDTEGGFSPERLVQ-MAETRGLNPEEALSRFILFTPSDFKEQRR 93 (220)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHH--H---HCSEEEEEESSCCCCHHHHHH-HHHTTTCCHHHHHHHEEEECCTTTSHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH--H---cCCcEEEEECCCCCCHHHHHH-HHHhcCCChHHHhhcEEEEecCCHHHHHH
Confidence 46899999999999999999887 1 113578887766556555443 33332221000 0001112233
Q ss_pred HHHHHHHHhcCCcEEEEEeCCC
Q 003890 280 KKTILRDYLTNKKYFIVLDDVF 301 (788)
Q Consensus 280 ~~~~l~~~l~~kr~LlVLDdvw 301 (788)
....++..++.+.-+||+|.+-
T Consensus 94 ~~~~~~~l~~~~~~lliiD~~~ 115 (220)
T 2cvh_A 94 VIGSLKKTVDSNFALVVVDSIT 115 (220)
T ss_dssp HHHHHHHHCCTTEEEEEEECCC
T ss_pred HHHHHHHHhhcCCCEEEEcCcH
Confidence 4455555554456799999885
No 224
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.22 E-value=0.01 Score=64.26 Aligned_cols=46 Identities=20% Similarity=0.122 Sum_probs=37.9
Q ss_pred CCcccchhcHHHHHHHHhc-----------CCCCcEEEEEEcCCCChHHHHHHHHHc
Q 003890 185 LDISEFERGREELFDLLIE-----------GPSGLSVVAILNGSGFDKTAFAADTYN 230 (788)
Q Consensus 185 ~~~vGr~~~~~~i~~~L~~-----------~~~~~~vi~I~G~gGiGKTtLa~~v~~ 230 (788)
.++.|.++.+++|.+.+.. +-...+-|-++|++|+|||+||+++++
T Consensus 181 ~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~ 237 (437)
T 4b4t_L 181 DGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAA 237 (437)
T ss_dssp GGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHH
T ss_pred hHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHH
Confidence 8899999999888877643 113457788999999999999999998
No 225
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.20 E-value=0.0096 Score=64.37 Aligned_cols=46 Identities=17% Similarity=0.200 Sum_probs=37.9
Q ss_pred CCcccchhcHHHHHHHHhc-----------CCCCcEEEEEEcCCCChHHHHHHHHHc
Q 003890 185 LDISEFERGREELFDLLIE-----------GPSGLSVVAILNGSGFDKTAFAADTYN 230 (788)
Q Consensus 185 ~~~vGr~~~~~~i~~~L~~-----------~~~~~~vi~I~G~gGiGKTtLa~~v~~ 230 (788)
.++.|.+..+++|.+.+.. +-...+-|-++|++|+|||+||+++++
T Consensus 172 ~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~ 228 (428)
T 4b4t_K 172 ADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVAN 228 (428)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHH
Confidence 8899999999988887642 113456688999999999999999998
No 226
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=96.19 E-value=0.0074 Score=71.29 Aligned_cols=45 Identities=13% Similarity=0.152 Sum_probs=38.6
Q ss_pred CCcccchhcHHHHHHHHhcCCCCcEEEEEEcCCCChHHHHHHHHHcc
Q 003890 185 LDISEFERGREELFDLLIEGPSGLSVVAILNGSGFDKTAFAADTYNN 231 (788)
Q Consensus 185 ~~~vGr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 231 (788)
..++||+.+++++.+.|.... ..-+-++|.+|+|||++|+.+.+.
T Consensus 180 d~iiG~~~~i~~l~~~l~~~~--~~~vLL~G~pGtGKT~la~~la~~ 224 (758)
T 3pxi_A 180 DPVIGRSKEIQRVIEVLSRRT--KNNPVLIGEPGVGKTAIAEGLAQQ 224 (758)
T ss_dssp CCCCCCHHHHHHHHHHHHCSS--SCEEEEESCTTTTTHHHHHHHHHH
T ss_pred CCccCchHHHHHHHHHHhCCC--CCCeEEECCCCCCHHHHHHHHHHH
Confidence 679999999999999997644 334679999999999999999873
No 227
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.14 E-value=0.025 Score=52.82 Aligned_cols=20 Identities=30% Similarity=0.297 Sum_probs=18.8
Q ss_pred EEEEEEcCCCChHHHHHHHH
Q 003890 209 SVVAILNGSGFDKTAFAADT 228 (788)
Q Consensus 209 ~vi~I~G~gGiGKTtLa~~v 228 (788)
.+|.|.|++|+||||+|+.+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 47899999999999999999
No 228
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.11 E-value=0.0076 Score=65.21 Aligned_cols=48 Identities=17% Similarity=0.207 Sum_probs=38.5
Q ss_pred CCCCcccchhcHHHHHHHHh----cC-------CCCcEEEEEEcCCCChHHHHHHHHHc
Q 003890 183 PRLDISEFERGREELFDLLI----EG-------PSGLSVVAILNGSGFDKTAFAADTYN 230 (788)
Q Consensus 183 ~~~~~vGr~~~~~~i~~~L~----~~-------~~~~~vi~I~G~gGiGKTtLa~~v~~ 230 (788)
.|.++.|.++.+++|.+.+. .. -...+-|-++|++|+|||.||+++++
T Consensus 179 t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~ 237 (434)
T 4b4t_M 179 TYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAA 237 (434)
T ss_dssp CGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHH
T ss_pred ChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHH
Confidence 34899999999998887642 22 13456788999999999999999998
No 229
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.05 E-value=0.011 Score=63.86 Aligned_cols=46 Identities=20% Similarity=0.154 Sum_probs=37.6
Q ss_pred CCcccchhcHHHHHHHHhc-----------CCCCcEEEEEEcCCCChHHHHHHHHHc
Q 003890 185 LDISEFERGREELFDLLIE-----------GPSGLSVVAILNGSGFDKTAFAADTYN 230 (788)
Q Consensus 185 ~~~vGr~~~~~~i~~~L~~-----------~~~~~~vi~I~G~gGiGKTtLa~~v~~ 230 (788)
.++.|.++.+++|.+.+.- +-...+-|-++|++|+|||+||+++++
T Consensus 209 ~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~ 265 (467)
T 4b4t_H 209 SDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVAN 265 (467)
T ss_dssp SSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHh
Confidence 7899999999988876522 113467788999999999999999998
No 230
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.04 E-value=0.0081 Score=64.06 Aligned_cols=46 Identities=15% Similarity=0.130 Sum_probs=37.4
Q ss_pred CCcccchhcHHHHHHHHhc-----------CCCCcEEEEEEcCCCChHHHHHHHHHc
Q 003890 185 LDISEFERGREELFDLLIE-----------GPSGLSVVAILNGSGFDKTAFAADTYN 230 (788)
Q Consensus 185 ~~~vGr~~~~~~i~~~L~~-----------~~~~~~vi~I~G~gGiGKTtLa~~v~~ 230 (788)
.++.|.++.+++|.+.+.- +-...+-|-++|++|.|||.||+++++
T Consensus 148 ~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~ 204 (405)
T 4b4t_J 148 DMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAH 204 (405)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHH
Confidence 8899999999888776642 112356678999999999999999998
No 231
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=95.98 E-value=0.0034 Score=74.13 Aligned_cols=46 Identities=11% Similarity=0.088 Sum_probs=37.8
Q ss_pred CCcccchhcHHHHHHHHhcCC-------CCcEEEEEEcCCCChHHHHHHHHHc
Q 003890 185 LDISEFERGREELFDLLIEGP-------SGLSVVAILNGSGFDKTAFAADTYN 230 (788)
Q Consensus 185 ~~~vGr~~~~~~i~~~L~~~~-------~~~~vi~I~G~gGiGKTtLa~~v~~ 230 (788)
..++|.+..++.+.+.+.... .....+-++|.+|+|||++|+.+++
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~ 543 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAE 543 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHH
T ss_pred CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHH
Confidence 568999999999888886421 2234789999999999999999998
No 232
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=95.90 E-value=0.0054 Score=63.81 Aligned_cols=48 Identities=17% Similarity=0.156 Sum_probs=32.5
Q ss_pred CCCccc----chhcHHHHHHHHhcCCC-CcEEEEEEcCCCChHHHHHHHHHcc
Q 003890 184 RLDISE----FERGREELFDLLIEGPS-GLSVVAILNGSGFDKTAFAADTYNN 231 (788)
Q Consensus 184 ~~~~vG----r~~~~~~i~~~L~~~~~-~~~vi~I~G~gGiGKTtLa~~v~~~ 231 (788)
+.++++ +...++.+.+++..... ....+.|+|.+|+|||+||+.+++.
T Consensus 123 fd~f~~~~~~~~~~~~~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~aia~~ 175 (308)
T 2qgz_A 123 LSDIDVNNASRMEAFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAHE 175 (308)
T ss_dssp GGGSCCCSHHHHHHHHHHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred HhhCcCCChHHHHHHHHHHHHHHhccccCCceEEEECCCCCCHHHHHHHHHHH
Confidence 345554 33344455566654321 2467889999999999999999983
No 233
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=95.68 E-value=0.021 Score=60.15 Aligned_cols=88 Identities=16% Similarity=0.110 Sum_probs=56.7
Q ss_pred CcEEEEEEcCCCChHHHHHHHHHcccCcccccceeEEEEeCCCCChHHHHHHHHHHcCCCCCC-cccccCCHHHHHHHHH
Q 003890 207 GLSVVAILNGSGFDKTAFAADTYNNNHIKFYFDCLAWVRVSIAYDSGKILDDIIKSVMPPSRV-SVIIGEDYKLKKTILR 285 (788)
Q Consensus 207 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~~l~~~~~~-~~~~~~~~~~~~~~l~ 285 (788)
.-.++.|+|.+|+||||||.++.... ...=..++|++....++.. .++.++..... ......+.++....+.
T Consensus 60 ~G~i~~I~GppGsGKSTLal~la~~~--~~~gg~VlyId~E~s~~~~-----ra~rlgv~~~~l~i~~~~~~e~~l~~~~ 132 (356)
T 3hr8_A 60 RGRIVEIFGQESSGKTTLALHAIAEA--QKMGGVAAFIDAEHALDPV-----YAKNLGVDLKSLLISQPDHGEQALEIVD 132 (356)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHH--HHTTCCEEEEESSCCCCHH-----HHHHHTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH--HhcCCeEEEEecccccchH-----HHHHcCCchhhhhhhhccCHHHHHHHHH
Confidence 35799999999999999999988742 2111247788776666643 34455443211 0113455667666666
Q ss_pred HHhc-CCcEEEEEeCCC
Q 003890 286 DYLT-NKKYFIVLDDVF 301 (788)
Q Consensus 286 ~~l~-~kr~LlVLDdvw 301 (788)
..++ ++.-++|+|.+.
T Consensus 133 ~l~~~~~~dlvVIDSi~ 149 (356)
T 3hr8_A 133 ELVRSGVVDLIVVDSVA 149 (356)
T ss_dssp HHHHTSCCSEEEEECTT
T ss_pred HHhhhcCCCeEEehHhh
Confidence 6654 455689999885
No 234
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=95.64 E-value=0.014 Score=69.04 Aligned_cols=46 Identities=15% Similarity=0.147 Sum_probs=38.4
Q ss_pred CCcccchhcHHHHHHHHhc-----------CCCCcEEEEEEcCCCChHHHHHHHHHc
Q 003890 185 LDISEFERGREELFDLLIE-----------GPSGLSVVAILNGSGFDKTAFAADTYN 230 (788)
Q Consensus 185 ~~~vGr~~~~~~i~~~L~~-----------~~~~~~vi~I~G~gGiGKTtLa~~v~~ 230 (788)
.+++|.+..++++.+++.. +-.....|.|+|.+|+||||||+.+..
T Consensus 204 ~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~ 260 (806)
T 1ypw_A 204 DDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVAN 260 (806)
T ss_dssp GGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHH
T ss_pred HHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHH
Confidence 7899999999999888753 112345789999999999999999998
No 235
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=95.63 E-value=0.023 Score=57.86 Aligned_cols=46 Identities=28% Similarity=0.285 Sum_probs=33.8
Q ss_pred CCcccchhcHHHHHHHHhcC------------CCCcEEEEEEcCCCChHHHHHHHHHcc
Q 003890 185 LDISEFERGREELFDLLIEG------------PSGLSVVAILNGSGFDKTAFAADTYNN 231 (788)
Q Consensus 185 ~~~vGr~~~~~~i~~~L~~~------------~~~~~vi~I~G~gGiGKTtLa~~v~~~ 231 (788)
.++.|.++.+++|.+.+... ..... +.++|++|+||||||+.++..
T Consensus 10 ~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~G-vlL~Gp~GtGKTtLakala~~ 67 (274)
T 2x8a_A 10 ADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAG-VLLAGPPGCGKTLLAKAVANE 67 (274)
T ss_dssp --CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSE-EEEESSTTSCHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCe-EEEECCCCCcHHHHHHHHHHH
Confidence 78899998888887755211 11123 899999999999999999983
No 236
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=95.60 E-value=0.029 Score=65.48 Aligned_cols=93 Identities=15% Similarity=0.180 Sum_probs=59.2
Q ss_pred CCcccchhcHHHHHHHHhc----CC-------CCcEEEEEEcCCCChHHHHHHHHHcccCcccccceeEEEEeCCCCChH
Q 003890 185 LDISEFERGREELFDLLIE----GP-------SGLSVVAILNGSGFDKTAFAADTYNNNHIKFYFDCLAWVRVSIAYDSG 253 (788)
Q Consensus 185 ~~~vGr~~~~~~i~~~L~~----~~-------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~ 253 (788)
.++.|.+..+++|.+.+.- .+ ...+-|-++|++|+|||+||+.+++ +...+| +.++.+
T Consensus 204 ~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~--elg~~~---~~v~~~------ 272 (806)
T 3cf2_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVAN--ETGAFF---FLINGP------ 272 (806)
T ss_dssp GGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHT--TTTCEE---EEEEHH------
T ss_pred hhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHH--HhCCeE---EEEEhH------
Confidence 7899999999888887632 11 2356788999999999999999999 444333 333321
Q ss_pred HHHHHHHHHcCCCCCCcccccCCHHHHHHHHHHHhcCCcEEEEEeCCC
Q 003890 254 KILDDIIKSVMPPSRVSVIIGEDYKLKKTILRDYLTNKKYFIVLDDVF 301 (788)
Q Consensus 254 ~~~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVLDdvw 301 (788)
++.... .......+........+..+.+|++|++.
T Consensus 273 ----~l~sk~---------~gese~~lr~lF~~A~~~~PsIIfIDEiD 307 (806)
T 3cf2_A 273 ----EIMSKL---------AGESESNLRKAFEEAEKNAPAIIFIDELD 307 (806)
T ss_dssp ----HHHSSC---------TTHHHHHHHHHHHHHTTSCSEEEEEESGG
T ss_pred ----Hhhccc---------chHHHHHHHHHHHHHHHcCCeEEEEehhc
Confidence 111110 11122333334444445678999999984
No 237
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=95.59 E-value=0.018 Score=68.89 Aligned_cols=46 Identities=13% Similarity=0.137 Sum_probs=36.9
Q ss_pred CCcccchhcHHHHHHHHhcC-------CCCcEEEEEEcCCCChHHHHHHHHHc
Q 003890 185 LDISEFERGREELFDLLIEG-------PSGLSVVAILNGSGFDKTAFAADTYN 230 (788)
Q Consensus 185 ~~~vGr~~~~~~i~~~L~~~-------~~~~~vi~I~G~gGiGKTtLa~~v~~ 230 (788)
..++|.+..++.+...+... ......+.|+|.+|+|||++|+.+.+
T Consensus 558 ~~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~ 610 (854)
T 1qvr_A 558 KRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAA 610 (854)
T ss_dssp HHSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHH
T ss_pred cccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHH
Confidence 35789999888888877532 12346889999999999999999987
No 238
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=95.55 E-value=0.009 Score=61.65 Aligned_cols=25 Identities=16% Similarity=0.198 Sum_probs=22.0
Q ss_pred CcEEEEEEcCCCChHHHHHHHHHcc
Q 003890 207 GLSVVAILNGSGFDKTAFAADTYNN 231 (788)
Q Consensus 207 ~~~vi~I~G~gGiGKTtLa~~v~~~ 231 (788)
..+.+.++|++|+|||+||+.+++.
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~~ 59 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFRK 59 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3567889999999999999999983
No 239
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=95.54 E-value=0.17 Score=49.84 Aligned_cols=23 Identities=17% Similarity=0.203 Sum_probs=21.2
Q ss_pred cEEEEEEcCCCChHHHHHHHHHc
Q 003890 208 LSVVAILNGSGFDKTAFAADTYN 230 (788)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~ 230 (788)
-.+++|+|..|+|||||.+.+..
T Consensus 34 Ge~~~i~G~nGsGKSTLl~~l~G 56 (229)
T 2pze_A 34 GQLLAVAGSTGAGKTSLLMMIMG 56 (229)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 35899999999999999999987
No 240
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.53 E-value=0.021 Score=61.08 Aligned_cols=47 Identities=21% Similarity=0.129 Sum_probs=38.2
Q ss_pred CCCcccchhcHHHHHHHHhc----C-------CCCcEEEEEEcCCCChHHHHHHHHHc
Q 003890 184 RLDISEFERGREELFDLLIE----G-------PSGLSVVAILNGSGFDKTAFAADTYN 230 (788)
Q Consensus 184 ~~~~vGr~~~~~~i~~~L~~----~-------~~~~~vi~I~G~gGiGKTtLa~~v~~ 230 (788)
|.++.|.++.+++|.+.+.. . -...+=|-++|++|.|||.||+++++
T Consensus 181 ~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~ 238 (437)
T 4b4t_I 181 YSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVAN 238 (437)
T ss_dssp GGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHH
T ss_pred ceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHH
Confidence 38899999999888876632 1 12356788999999999999999998
No 241
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=95.48 E-value=0.07 Score=52.91 Aligned_cols=23 Identities=17% Similarity=0.281 Sum_probs=21.2
Q ss_pred cEEEEEEcCCCChHHHHHHHHHc
Q 003890 208 LSVVAILNGSGFDKTAFAADTYN 230 (788)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~ 230 (788)
-.+++|+|..|+|||||++.+..
T Consensus 31 Ge~~~i~G~nGsGKSTLl~~l~G 53 (237)
T 2cbz_A 31 GALVAVVGQVGCGKSSLLSALLA 53 (237)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 45899999999999999999987
No 242
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=95.36 E-value=0.034 Score=54.77 Aligned_cols=118 Identities=14% Similarity=0.023 Sum_probs=61.3
Q ss_pred cEEEEEEcCCCChHHHHHHHHHcccCcccccceeEEEEeCCCCChHHHHHHHHHHcCCCCCCcc----------------
Q 003890 208 LSVVAILNGSGFDKTAFAADTYNNNHIKFYFDCLAWVRVSIAYDSGKILDDIIKSVMPPSRVSV---------------- 271 (788)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~~l~~~~~~~~---------------- 271 (788)
-.+++|+|.+|+|||||++.+.... ...=..++|+.... ....+...+ ..++.......
T Consensus 23 G~~~~i~G~~GsGKTtl~~~l~~~~--~~~~~~v~~~~~~~--~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (235)
T 2w0m_A 23 GFFIALTGEPGTGKTIFSLHFIAKG--LRDGDPCIYVTTEE--SRDSIIRQA-KQFNWDFEEYIEKKLIIIDALMKEKED 97 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHHH--HHHTCCEEEEESSS--CHHHHHHHH-HHTTCCCGGGBTTTEEEEECCC----C
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHH--HHCCCeEEEEEccc--CHHHHHHHH-HHhcchHHHHhhCCEEEEeccccccCc
Confidence 3689999999999999999988532 11112356655433 334443333 23332211000
Q ss_pred ---cccCCHHHHHHHHHHHhcC---CcEEEEEeCCC--C--ChhhHHHHhhhcCC--CCCCcEEEEecCCh
Q 003890 272 ---IIGEDYKLKKTILRDYLTN---KKYFIVLDDVF--N--DSDIWDDLEQVLPD--NQNGSRVLITVTDL 330 (788)
Q Consensus 272 ---~~~~~~~~~~~~l~~~l~~---kr~LlVLDdvw--~--~~~~~~~l~~~l~~--~~~gskIivTTR~~ 330 (788)
....+..++...+.+.+.. +..++|+|... . +......+...+.. ...|..||+||...
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~ 168 (235)
T 2w0m_A 98 QWSLVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAMARKISYYLKRVLNKWNFTIYATSQYA 168 (235)
T ss_dssp TTBCSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC--
T ss_pred eeeecCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccC
Confidence 0112455665555555432 33499999885 1 22223333333221 12467888888765
No 243
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=95.32 E-value=0.054 Score=53.72 Aligned_cols=93 Identities=5% Similarity=-0.001 Sum_probs=53.6
Q ss_pred cEEEEEEcCCCChHHHHHHHHHcccCccc----ccceeEEEEeCCCCChHHHHHHHHHHcCCCCC----C-cccccCCHH
Q 003890 208 LSVVAILNGSGFDKTAFAADTYNNNHIKF----YFDCLAWVRVSIAYDSGKILDDIIKSVMPPSR----V-SVIIGEDYK 278 (788)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~----~F~~~~wv~vs~~~~~~~~~~~il~~l~~~~~----~-~~~~~~~~~ 278 (788)
-.++.|+|.+|+|||||++.+........ .-..++|++....++...+. .++..++.... . ......+.+
T Consensus 24 G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~ 102 (243)
T 1n0w_A 24 GSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLL-AVAERYGLSGSDVLDNVAYARAFNTD 102 (243)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHH-HHHHHTTCCHHHHHHTEEEEECCSHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHH-HHHHHcCCCHHHHhhCeEEEecCCHH
Confidence 46999999999999999999887322211 12358888776655544433 34444443210 0 000122233
Q ss_pred H---HHHHHHHHhc-CCcEEEEEeCCC
Q 003890 279 L---KKTILRDYLT-NKKYFIVLDDVF 301 (788)
Q Consensus 279 ~---~~~~l~~~l~-~kr~LlVLDdvw 301 (788)
+ ....+.+.+. .+.-+||+|.+.
T Consensus 103 ~~~~~~~~~~~~~~~~~~~lliiD~~~ 129 (243)
T 1n0w_A 103 HQTQLLYQASAMMVESRYALLIVDSAT 129 (243)
T ss_dssp HHHHHHHHHHHHHHHSCEEEEEEETSS
T ss_pred HHHHHHHHHHHHHhcCCceEEEEeCch
Confidence 3 2333445553 467799999985
No 244
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=95.31 E-value=0.029 Score=53.41 Aligned_cols=117 Identities=14% Similarity=0.064 Sum_probs=59.9
Q ss_pred cEEEEEEcCCCChHHHHHHHHHcccCcccccceeEEEEeCC---CCChHHHHHHHHHHcCCCCC----Cccccc------
Q 003890 208 LSVVAILNGSGFDKTAFAADTYNNNHIKFYFDCLAWVRVSI---AYDSGKILDDIIKSVMPPSR----VSVIIG------ 274 (788)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~---~~~~~~~~~~il~~l~~~~~----~~~~~~------ 274 (788)
-..|-|++..|.||||+|-.+.-. -...-+ .+.++..-+ .+....+ +..+..... .-.+..
T Consensus 28 ~g~i~v~tG~GkGKTTaA~GlalR-A~g~G~-rV~~vQF~Kg~~~~gE~~~----l~~L~v~~~~~g~gf~~~~~~~~~~ 101 (196)
T 1g5t_A 28 RGIIIVFTGNGKGKTTAAFGTAAR-AVGHGK-NVGVVQFIKGTWPNGERNL----LEPHGVEFQVMATGFTWETQNREAD 101 (196)
T ss_dssp CCCEEEEESSSSCHHHHHHHHHHH-HHHTTC-CEEEEESSCCSSCCHHHHH----HGGGTCEEEECCTTCCCCGGGHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHH-HHHCCC-eEEEEEeeCCCCCccHHHH----HHhCCcEEEEcccccccCCCCcHHH
Confidence 356667777789999998776652 112222 244443322 2233333 333320000 000011
Q ss_pred -CCHHHHHHHHHHHhcCCcE-EEEEeCCCC----ChhhHHHHhhhcCCCCCCcEEEEecCCh
Q 003890 275 -EDYKLKKTILRDYLTNKKY-FIVLDDVFN----DSDIWDDLEQVLPDNQNGSRVLITVTDL 330 (788)
Q Consensus 275 -~~~~~~~~~l~~~l~~kr~-LlVLDdvw~----~~~~~~~l~~~l~~~~~gskIivTTR~~ 330 (788)
.........+++.+...+| |||||++-. .-...+.+...+.......-||+|+|..
T Consensus 102 ~~~a~~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~a 163 (196)
T 1g5t_A 102 TAACMAVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGC 163 (196)
T ss_dssp HHHHHHHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSC
T ss_pred HHHHHHHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCC
Confidence 1122334455666655555 999999830 2233345555555445567899999973
No 245
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=95.30 E-value=0.016 Score=56.06 Aligned_cols=41 Identities=20% Similarity=0.112 Sum_probs=32.9
Q ss_pred chhcHHHHHHHHhcC-CCCcEEEEEEcCCCChHHHHHHHHHc
Q 003890 190 FERGREELFDLLIEG-PSGLSVVAILNGSGFDKTAFAADTYN 230 (788)
Q Consensus 190 r~~~~~~i~~~L~~~-~~~~~vi~I~G~gGiGKTtLa~~v~~ 230 (788)
|++.++.+.+.+... .....+|+|.|..|+||||+++.+..
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 3 LRDRIDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp HHHHHHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 455677788877653 23468999999999999999999886
No 246
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=95.28 E-value=0.011 Score=57.63 Aligned_cols=37 Identities=16% Similarity=0.214 Sum_probs=28.1
Q ss_pred HHHHHHHHhcCCCCcEEEEEEcCCCChHHHHHHHHHc
Q 003890 194 REELFDLLIEGPSGLSVVAILNGSGFDKTAFAADTYN 230 (788)
Q Consensus 194 ~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 230 (788)
.++|.+.+......-.+|+|+|..|+|||||++.+..
T Consensus 8 ~~~~~~~~~~~~~~g~~v~I~G~sGsGKSTl~~~l~~ 44 (208)
T 3c8u_A 8 CQGVLERLDPRQPGRQLVALSGAPGSGKSTLSNPLAA 44 (208)
T ss_dssp HHHHHHHSCTTCCSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4455555543333568999999999999999999887
No 247
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=95.28 E-value=0.012 Score=57.77 Aligned_cols=112 Identities=17% Similarity=0.040 Sum_probs=62.0
Q ss_pred cEEEEEEcCCCChHHHHHHHHHcccCcccccceeEEEEeCCCCChHHHHHHHHHHcCCCCCCcccccCCHHHHHHHHHHH
Q 003890 208 LSVVAILNGSGFDKTAFAADTYNNNHIKFYFDCLAWVRVSIAYDSGKILDDIIKSVMPPSRVSVIIGEDYKLKKTILRDY 287 (788)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~~ 287 (788)
-.++.|+|..|+||||++..+... ...+-..++.+.-... .. ....+++.++..... .......++...+.+.
T Consensus 12 G~i~litG~mGsGKTT~ll~~~~r--~~~~g~kVli~~~~~d--~r-~~~~i~srlG~~~~~--~~~~~~~~i~~~i~~~ 84 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAELIRRLHR--LEYADVKYLVFKPKID--TR-SIRNIQSRTGTSLPS--VEVESAPEILNYIMSN 84 (223)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHH--HHHTTCCEEEEEECCC--GG-GCSSCCCCCCCSSCC--EEESSTHHHHHHHHST
T ss_pred cEEEEEECCCCCcHHHHHHHHHHH--HHhcCCEEEEEEeccC--ch-HHHHHHHhcCCCccc--cccCCHHHHHHHHHHH
Confidence 468889999999999998877763 3322223344432222 11 112344444432211 1123345566666665
Q ss_pred hcCCcE-EEEEeCCCC-ChhhHHHHhhhcCCCCCCcEEEEecCC
Q 003890 288 LTNKKY-FIVLDDVFN-DSDIWDDLEQVLPDNQNGSRVLITVTD 329 (788)
Q Consensus 288 l~~kr~-LlVLDdvw~-~~~~~~~l~~~l~~~~~gskIivTTR~ 329 (788)
+.+.++ +||+|.+.. +.+..+.+.. +.+ .|-.||+|-++
T Consensus 85 ~~~~~~dvViIDEaQ~l~~~~ve~l~~-L~~--~gi~Vil~Gl~ 125 (223)
T 2b8t_A 85 SFNDETKVIGIDEVQFFDDRICEVANI-LAE--NGFVVIISGLD 125 (223)
T ss_dssp TSCTTCCEEEECSGGGSCTHHHHHHHH-HHH--TTCEEEEECCS
T ss_pred hhCCCCCEEEEecCccCcHHHHHHHHH-HHh--CCCeEEEEecc
Confidence 555555 999999962 2344444433 222 26789999884
No 248
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=95.23 E-value=0.0092 Score=62.90 Aligned_cols=46 Identities=20% Similarity=0.087 Sum_probs=36.7
Q ss_pred CCcccchhcHHHHHHHHhcC---CCCcEEEEEEcCCCChHHHHHHHHHc
Q 003890 185 LDISEFERGREELFDLLIEG---PSGLSVVAILNGSGFDKTAFAADTYN 230 (788)
Q Consensus 185 ~~~vGr~~~~~~i~~~L~~~---~~~~~vi~I~G~gGiGKTtLa~~v~~ 230 (788)
.+++|.+..++.+...+..+ ......+.++|++|+||||||+.+++
T Consensus 25 ~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~ 73 (334)
T 1in4_A 25 DEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIAS 73 (334)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHH
T ss_pred HHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHH
Confidence 67889887777776666542 22356789999999999999999998
No 249
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=95.21 E-value=0.034 Score=58.20 Aligned_cols=93 Identities=13% Similarity=0.069 Sum_probs=56.2
Q ss_pred cEEEEEEcCCCChHHHHHHHHHcccCcccc----cceeEEEEeCCCCChHHHHHHHHHHcCCCCCC-----cccccCCHH
Q 003890 208 LSVVAILNGSGFDKTAFAADTYNNNHIKFY----FDCLAWVRVSIAYDSGKILDDIIKSVMPPSRV-----SVIIGEDYK 278 (788)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~----F~~~~wv~vs~~~~~~~~~~~il~~l~~~~~~-----~~~~~~~~~ 278 (788)
-.++.|+|.+|+||||||.++......... =..++|++....++..++. +++..++..... ......+.+
T Consensus 107 G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~-~~~~~~g~~~~~~~~~l~~~~~~~~~ 185 (324)
T 2z43_A 107 RTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIE-NMAKALGLDIDNVMNNIYYIRAINTD 185 (324)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHH-HHHHHTTCCHHHHHHTEEEEECCSHH
T ss_pred CcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHH-HHHHHhCCCHHHHhccEEEEeCCCHH
Confidence 468999999999999999998864222211 1358999888877776655 345555432110 000122233
Q ss_pred ---HHHHHHHHHhc--CCcEEEEEeCCC
Q 003890 279 ---LKKTILRDYLT--NKKYFIVLDDVF 301 (788)
Q Consensus 279 ---~~~~~l~~~l~--~kr~LlVLDdvw 301 (788)
++...+.+.++ .+.-+||+|.+.
T Consensus 186 ~~~~~l~~l~~~~~~~~~~~lvVIDsl~ 213 (324)
T 2z43_A 186 HQIAIVDDLQELVSKDPSIKLIVVDSVT 213 (324)
T ss_dssp HHHHHHHHHHHHHHHCTTEEEEEETTTT
T ss_pred HHHHHHHHHHHHHHhccCCCEEEEeCcH
Confidence 23445555553 456688888885
No 250
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=95.20 E-value=0.036 Score=58.49 Aligned_cols=88 Identities=18% Similarity=0.073 Sum_probs=55.1
Q ss_pred CcEEEEEEcCCCChHHHHHHHHHcccCcccccceeEEEEeCCCCChHHHHHHHHHHcCCCCCCc-ccccCCHHHHHHHHH
Q 003890 207 GLSVVAILNGSGFDKTAFAADTYNNNHIKFYFDCLAWVRVSIAYDSGKILDDIIKSVMPPSRVS-VIIGEDYKLKKTILR 285 (788)
Q Consensus 207 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~~l~~~~~~~-~~~~~~~~~~~~~l~ 285 (788)
.-+++.|+|.+|+||||||.++... ....=..++|++....++.. ..+.++...... .....+.++....+.
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la~~--~~~~g~~vlyi~~E~~~~~~-----~a~~lG~~~~~l~i~~~~~~e~~l~~~~ 132 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAVAN--AQAAGGIAAFIDAEHALDPE-----YAKKLGVDTDSLLVSQPDTGEQALEIAD 132 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHH--HHHTTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH--HHhCCCeEEEEECCCCcCHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHH
Confidence 3568999999999999999988763 22111348888887766643 244444332110 012345666666666
Q ss_pred HHhcC-CcEEEEEeCCC
Q 003890 286 DYLTN-KKYFIVLDDVF 301 (788)
Q Consensus 286 ~~l~~-kr~LlVLDdvw 301 (788)
...+. +.-+||+|.+-
T Consensus 133 ~l~~~~~~~lIVIDsl~ 149 (349)
T 2zr9_A 133 MLVRSGALDIIVIDSVA 149 (349)
T ss_dssp HHHTTTCCSEEEEECGG
T ss_pred HHHhcCCCCEEEEcChH
Confidence 55543 45699999884
No 251
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=95.17 E-value=0.031 Score=61.86 Aligned_cols=49 Identities=20% Similarity=0.207 Sum_probs=35.8
Q ss_pred CCCCcccchhcHHHHHHHHh---cCC-------CCcEEEEEEcCCCChHHHHHHHHHcc
Q 003890 183 PRLDISEFERGREELFDLLI---EGP-------SGLSVVAILNGSGFDKTAFAADTYNN 231 (788)
Q Consensus 183 ~~~~~vGr~~~~~~i~~~L~---~~~-------~~~~vi~I~G~gGiGKTtLa~~v~~~ 231 (788)
.|.+++|.+..++++.+... ... .-.+-+.|+|.+|+||||||+.++..
T Consensus 29 ~f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~ 87 (499)
T 2dhr_A 29 TFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGE 87 (499)
T ss_dssp CTTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHH
T ss_pred CHHHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 34889999988777666542 210 11223889999999999999999983
No 252
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=95.08 E-value=0.038 Score=57.79 Aligned_cols=94 Identities=13% Similarity=0.095 Sum_probs=57.2
Q ss_pred CcEEEEEEcCCCChHHHHHHHHHcccCccc---------cc-----ceeEEEEeCCCCChHHHHHHHHHHcCCCCCC---
Q 003890 207 GLSVVAILNGSGFDKTAFAADTYNNNHIKF---------YF-----DCLAWVRVSIAYDSGKILDDIIKSVMPPSRV--- 269 (788)
Q Consensus 207 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~---------~F-----~~~~wv~vs~~~~~~~~~~~il~~l~~~~~~--- 269 (788)
.-.++.|+|.+|+||||||.+++....... .. ..++|++....++..++.+ +++.++.....
T Consensus 97 ~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~-~~~~~g~~~~~~~~ 175 (322)
T 2i1q_A 97 SQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQ-MAEHAGIDGQTVLD 175 (322)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHH-HHHHHTCCHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHH-HHHHcCCCHHHHhc
Confidence 357999999999999999998876422211 11 3589998888877776653 44555432110
Q ss_pred --cccccCCHH---HHHHHHHHHhcC--CcEEEEEeCCC
Q 003890 270 --SVIIGEDYK---LKKTILRDYLTN--KKYFIVLDDVF 301 (788)
Q Consensus 270 --~~~~~~~~~---~~~~~l~~~l~~--kr~LlVLDdvw 301 (788)
......+.+ ++...+.+.++. +.-+||+|.+.
T Consensus 176 ~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~ 214 (322)
T 2i1q_A 176 NTFVARAYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSLT 214 (322)
T ss_dssp TEEEEECSSHHHHHHHHHTHHHHHHTTCEEEEEEEECSS
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHhhccCccEEEEECcH
Confidence 000122333 244455555543 45588999884
No 253
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=95.06 E-value=0.046 Score=57.96 Aligned_cols=87 Identities=14% Similarity=0.043 Sum_probs=55.6
Q ss_pred cEEEEEEcCCCChHHHHHHHHHcccCcccccceeEEEEeCCCCChHHHHHHHHHHcCCCCCCc-ccccCCHHHHHHHHHH
Q 003890 208 LSVVAILNGSGFDKTAFAADTYNNNHIKFYFDCLAWVRVSIAYDSGKILDDIIKSVMPPSRVS-VIIGEDYKLKKTILRD 286 (788)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~~l~~~~~~~-~~~~~~~~~~~~~l~~ 286 (788)
-.++.|.|.+|+||||||.++.... ...=..++|++....++.. .+..++.....- ..+..+.++....+..
T Consensus 74 G~li~I~G~pGsGKTtlal~la~~~--~~~g~~vlyi~~E~s~~~~-----~a~~~g~d~~~l~i~~~~~~e~~l~~l~~ 146 (366)
T 1xp8_A 74 GRITEIYGPESGGKTTLALAIVAQA--QKAGGTCAFIDAEHALDPV-----YARALGVNTDELLVSQPDNGEQALEIMEL 146 (366)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHH--HHTTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHHH
T ss_pred CcEEEEEcCCCCChHHHHHHHHHHH--HHCCCeEEEEECCCChhHH-----HHHHcCCCHHHceeecCCcHHHHHHHHHH
Confidence 4588889999999999998887632 2222358999887766643 234444321100 0123456777777776
Q ss_pred HhcC-CcEEEEEeCCC
Q 003890 287 YLTN-KKYFIVLDDVF 301 (788)
Q Consensus 287 ~l~~-kr~LlVLDdvw 301 (788)
..+. +--+||+|.+.
T Consensus 147 l~~~~~~~lVVIDsl~ 162 (366)
T 1xp8_A 147 LVRSGAIDVVVVDSVA 162 (366)
T ss_dssp HHTTTCCSEEEEECTT
T ss_pred HHhcCCCCEEEEeChH
Confidence 6653 45599999884
No 254
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=95.06 E-value=0.57 Score=49.76 Aligned_cols=82 Identities=10% Similarity=0.028 Sum_probs=43.4
Q ss_pred cCCCCCCCeEEEEccCCcChhcHHHhccCCCCCCEEEeecCCCCCcccccccCCCccccccc--cccccccccC-cccCC
Q 003890 659 LGRLPNVQTLRISGDLSCYHSGVSKSLCELHKLECLKLVNERKPSRMVLYEYQFPPTDMARI--LSQLIRQEFV-ESEMS 735 (788)
Q Consensus 659 l~~L~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~l~~~~~L~~L--~~~l~~~~lp-~~l~~ 735 (788)
+..+.+|+.+.+...- ...-...+.++.+|+.+.+.++.... .....+..+.+|+.+ -+.+ ..++ ..|.+
T Consensus 259 F~~~~~l~~i~l~~~i---~~i~~~aF~~c~~L~~i~l~~~~i~~--I~~~aF~~c~~L~~i~lp~~l--~~I~~~aF~~ 331 (379)
T 4h09_A 259 LQNCTALKTLNFYAKV---KTVPYLLCSGCSNLTKVVMDNSAIET--LEPRVFMDCVKLSSVTLPTAL--KTIQVYAFKN 331 (379)
T ss_dssp TTTCTTCCEEEECCCC---SEECTTTTTTCTTCCEEEECCTTCCE--ECTTTTTTCTTCCEEECCTTC--CEECTTTTTT
T ss_pred cceeehhccccccccc---eeccccccccccccccccccccccce--ehhhhhcCCCCCCEEEcCccc--cEEHHHHhhC
Confidence 4556667766664321 12222356667777777776432110 234456666777776 2334 3443 23556
Q ss_pred CCCcceEEEecc
Q 003890 736 LPLLQLLDLEES 747 (788)
Q Consensus 736 l~~L~~L~L~~~ 747 (788)
+++|+.+.+..+
T Consensus 332 C~~L~~i~ip~~ 343 (379)
T 4h09_A 332 CKALSTISYPKS 343 (379)
T ss_dssp CTTCCCCCCCTT
T ss_pred CCCCCEEEECCc
Confidence 667777766443
No 255
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=95.06 E-value=0.058 Score=52.55 Aligned_cols=23 Identities=22% Similarity=0.208 Sum_probs=20.9
Q ss_pred cEEEEEEcCCCChHHHHHHHHHc
Q 003890 208 LSVVAILNGSGFDKTAFAADTYN 230 (788)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~ 230 (788)
-.+++|+|..|+|||||.+.++.
T Consensus 35 Ge~~~iiG~NGsGKSTLlk~l~G 57 (214)
T 1sgw_A 35 GNVVNFHGPNGIGKTTLLKTIST 57 (214)
T ss_dssp TCCEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 35899999999999999999986
No 256
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=95.06 E-value=0.027 Score=66.48 Aligned_cols=46 Identities=11% Similarity=0.109 Sum_probs=37.1
Q ss_pred CCcccchhcHHHHHHHHhcC-------CCCcEEEEEEcCCCChHHHHHHHHHc
Q 003890 185 LDISEFERGREELFDLLIEG-------PSGLSVVAILNGSGFDKTAFAADTYN 230 (788)
Q Consensus 185 ~~~vGr~~~~~~i~~~L~~~-------~~~~~vi~I~G~gGiGKTtLa~~v~~ 230 (788)
..++|.+..++.+...+... ......+-++|.+|+|||++|+.+.+
T Consensus 458 ~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~ 510 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSK 510 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHH
Confidence 56889999998888877531 12345788999999999999999998
No 257
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=95.00 E-value=0.011 Score=61.41 Aligned_cols=47 Identities=13% Similarity=0.050 Sum_probs=37.3
Q ss_pred CCcccchhcHHHHHHHHhcC------------CCCcEEEEEEcCCCChHHHHHHHHHcc
Q 003890 185 LDISEFERGREELFDLLIEG------------PSGLSVVAILNGSGFDKTAFAADTYNN 231 (788)
Q Consensus 185 ~~~vGr~~~~~~i~~~L~~~------------~~~~~vi~I~G~gGiGKTtLa~~v~~~ 231 (788)
..++|.+..++.+...+... ......+-++|.+|+|||++|+.+.+.
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~ 73 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKL 73 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999998887541 112456779999999999999999983
No 258
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=95.00 E-value=0.09 Score=55.38 Aligned_cols=94 Identities=6% Similarity=0.054 Sum_probs=55.3
Q ss_pred CcEEEEEEcCCCChHHHHHHHHHcccCccc----ccceeEEEEeCCCCChHHHHHHHHHHcCCCCC----C---ccc-cc
Q 003890 207 GLSVVAILNGSGFDKTAFAADTYNNNHIKF----YFDCLAWVRVSIAYDSGKILDDIIKSVMPPSR----V---SVI-IG 274 (788)
Q Consensus 207 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~----~F~~~~wv~vs~~~~~~~~~~~il~~l~~~~~----~---~~~-~~ 274 (788)
.-.++.|+|.+|+||||||.+++....... .=..++|++....++..++. .++..++.... . ..+ ..
T Consensus 121 ~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~-~~~~~~g~~~~~~l~~l~~~~~~~~ 199 (343)
T 1v5w_A 121 SMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLR-DIADRFNVDHDAVLDNVLYARAYTS 199 (343)
T ss_dssp SSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHH-HHHHHTTCCHHHHHHTEEEEECCST
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHH-HHHHHcCCCHHHHHhceeEeecCCH
Confidence 457999999999999999999887422211 12358899888877776654 34444443210 0 000 11
Q ss_pred CCHHHHHHHHHHHhc---CCcEEEEEeCCC
Q 003890 275 EDYKLKKTILRDYLT---NKKYFIVLDDVF 301 (788)
Q Consensus 275 ~~~~~~~~~l~~~l~---~kr~LlVLDdvw 301 (788)
....++...+.+.++ .+--+||+|.+.
T Consensus 200 e~~~~ll~~l~~~i~~~~~~~~lvVIDsl~ 229 (343)
T 1v5w_A 200 EHQMELLDYVAAKFHEEAGIFKLLIIDSIM 229 (343)
T ss_dssp THHHHHHHHHHHHHHHSCSSEEEEEEETSG
T ss_pred HHHHHHHHHHHHHHHhcCCCccEEEEechH
Confidence 112233334444443 455688888884
No 259
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=94.93 E-value=0.14 Score=51.47 Aligned_cols=22 Identities=27% Similarity=0.256 Sum_probs=20.4
Q ss_pred EEEEEEcCCCChHHHHHHHHHc
Q 003890 209 SVVAILNGSGFDKTAFAADTYN 230 (788)
Q Consensus 209 ~vi~I~G~gGiGKTtLa~~v~~ 230 (788)
.+++|+|..|+|||||.+.++.
T Consensus 31 e~~~i~G~NGsGKSTLlk~l~G 52 (263)
T 2pjz_A 31 EKVIILGPNGSGKTTLLRAISG 52 (263)
T ss_dssp SEEEEECCTTSSHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHhC
Confidence 4899999999999999999986
No 260
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=94.87 E-value=0.034 Score=53.10 Aligned_cols=108 Identities=11% Similarity=0.043 Sum_probs=63.9
Q ss_pred ccccceEEecCC-CCchhhhhhhhhhhcCCccccEEEecCCCCC-----CCCccccCCCCccEEEecCCCCcc-----cC
Q 003890 519 DIYLQSFLNHSS-ESDHLALIDCENFCEKFKHLRILNLGSAVLV-----QFPPGLENLFHLKYLKLNIPSLKC-----LP 587 (788)
Q Consensus 519 ~~~Lr~L~l~~~-~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~-----~lp~~i~~L~~L~~L~L~~~~i~~-----lp 587 (788)
-+.|+.|.+.++ .....-...+-..+..-+.|+.|+|++|.|. .+...+..-..|++|+|++|.|.. +-
T Consensus 40 n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala 119 (197)
T 1pgv_A 40 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLL 119 (197)
T ss_dssp CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHH
T ss_pred CCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHH
Confidence 456777777764 4422212223366666777888888888775 233444455678888888877652 33
Q ss_pred hhhcCCCCCcEEEccCCC---Cc-----ccchhhhcccccceeeccC
Q 003890 588 SLLCTLLNLQTLEMPSSY---VD-----QSPEDIWMMQKLMHLNFGS 626 (788)
Q Consensus 588 ~~i~~L~~L~~L~L~~~~---l~-----~lp~~l~~L~~L~~L~l~~ 626 (788)
+.+..-+.|++|+|++|. +. .+...+..-+.|+.|+++.
T Consensus 120 ~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~ 166 (197)
T 1pgv_A 120 RSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISF 166 (197)
T ss_dssp HHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCC
T ss_pred HHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccC
Confidence 345455568888887552 22 1333445556677777653
No 261
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=94.76 E-value=0.1 Score=53.54 Aligned_cols=86 Identities=7% Similarity=0.063 Sum_probs=54.9
Q ss_pred EEEEEEcCCCChHHHHHHHHHcccCccccc--ceeEEEEeCCCCChHHHHHHHHHHcCCCCCCc-ccccCCHHHH-HHHH
Q 003890 209 SVVAILNGSGFDKTAFAADTYNNNHIKFYF--DCLAWVRVSIAYDSGKILDDIIKSVMPPSRVS-VIIGEDYKLK-KTIL 284 (788)
Q Consensus 209 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F--~~~~wv~vs~~~~~~~~~~~il~~l~~~~~~~-~~~~~~~~~~-~~~l 284 (788)
.++-|.|.+|+||||||.++... ....+ ..++|++....++.. -++.++.....- .....+.++. ...+
T Consensus 29 GiteI~G~pGsGKTtL~Lq~~~~--~~~~g~g~~vlyId~E~s~~~~-----ra~~lGvd~d~llv~~~~~~E~~~l~i~ 101 (333)
T 3io5_A 29 GLLILAGPSKSFKSNFGLTMVSS--YMRQYPDAVCLFYDSEFGITPA-----YLRSMGVDPERVIHTPVQSLEQLRIDMV 101 (333)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHH--HHHHCTTCEEEEEESSCCCCHH-----HHHHTTCCGGGEEEEECSBHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH--HHhcCCCceEEEEeccchhhHH-----HHHHhCCCHHHeEEEcCCCHHHHHHHHH
Confidence 37899999999999999887763 32222 248898887777653 256666543210 0123455665 4433
Q ss_pred HHH--h-cCCcEEEEEeCCC
Q 003890 285 RDY--L-TNKKYFIVLDDVF 301 (788)
Q Consensus 285 ~~~--l-~~kr~LlVLDdvw 301 (788)
... + .++.-++|+|-|.
T Consensus 102 ~~l~~i~~~~~~lvVIDSI~ 121 (333)
T 3io5_A 102 NQLDAIERGEKVVVFIDSLG 121 (333)
T ss_dssp HHHHTCCTTCCEEEEEECST
T ss_pred HHHHHhhccCceEEEEeccc
Confidence 332 3 4577899999985
No 262
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=94.68 E-value=0.072 Score=54.76 Aligned_cols=86 Identities=9% Similarity=0.058 Sum_probs=44.7
Q ss_pred cEEEEEEcCCCChHHHHHHHHHcccCcccccceeEEEEeCC-CCChHHHHHHHHHHcCCCCCCcccccCCHHHHHHHHHH
Q 003890 208 LSVVAILNGSGFDKTAFAADTYNNNHIKFYFDCLAWVRVSI-AYDSGKILDDIIKSVMPPSRVSVIIGEDYKLKKTILRD 286 (788)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~-~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~ 286 (788)
..+++++|.+|+||||++..+..-....... .+..+.... .....+-+....+..+.... ...+...+...+..
T Consensus 105 g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~-~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~----~~~~~~~l~~al~~ 179 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTLAKLAAISMLEKHK-KIAFITTDTYRIAAVEQLKTYAELLQAPLE----VCYTKEEFQQAKEL 179 (296)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHHHHTTCC-CEEEEECCCSSTTHHHHHHHHHTTTTCCCC----BCSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCC-EEEEEecCcccchHHHHHHHHHHhcCCCeE----ecCCHHHHHHHHHH
Confidence 5799999999999999998887632211111 244444322 22233333333333332221 12233444444443
Q ss_pred HhcCCcEEEEEeCC
Q 003890 287 YLTNKKYFIVLDDV 300 (788)
Q Consensus 287 ~l~~kr~LlVLDdv 300 (788)
+ .+.=++|+|-.
T Consensus 180 -~-~~~dlvIiDT~ 191 (296)
T 2px0_A 180 -F-SEYDHVFVDTA 191 (296)
T ss_dssp -G-GGSSEEEEECC
T ss_pred -h-cCCCEEEEeCC
Confidence 3 33447888844
No 263
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=94.67 E-value=0.029 Score=57.55 Aligned_cols=26 Identities=15% Similarity=0.103 Sum_probs=23.0
Q ss_pred CCCcEEEEEEcCCCChHHHHHHHHHc
Q 003890 205 PSGLSVVAILNGSGFDKTAFAADTYN 230 (788)
Q Consensus 205 ~~~~~vi~I~G~gGiGKTtLa~~v~~ 230 (788)
.....+|+|+|..|+||||||+.+..
T Consensus 28 ~~~~~ii~I~G~sGsGKSTla~~L~~ 53 (290)
T 1odf_A 28 NKCPLFIFFSGPQGSGKSFTSIQIYN 53 (290)
T ss_dssp CCSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 34578999999999999999998876
No 264
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=94.62 E-value=0.031 Score=59.05 Aligned_cols=114 Identities=12% Similarity=0.042 Sum_probs=65.6
Q ss_pred cEEEEEEcCCCChHHHHHHHHHcccCcccccce-eEEEEeCCCCChHHHHHHHHHHcCCCCCCcccccCCHHHHHHHHHH
Q 003890 208 LSVVAILNGSGFDKTAFAADTYNNNHIKFYFDC-LAWVRVSIAYDSGKILDDIIKSVMPPSRVSVIIGEDYKLKKTILRD 286 (788)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~-~~wv~vs~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~ 286 (788)
-.+++|+|..|+|||||.+.+.. .+...... ++.+.-.-.+.... ...... +.....+.......|..
T Consensus 123 ~g~i~I~GptGSGKTTlL~~l~g--~~~~~~~~~i~t~ed~~e~~~~~--------~~~~v~-q~~~~~~~~~~~~~La~ 191 (356)
T 3jvv_A 123 RGLVLVTGPTGSGKSTTLAAMLD--YLNNTKYHHILTIEDPIEFVHES--------KKCLVN-QREVHRDTLGFSEALRS 191 (356)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHH--HHHHHCCCEEEEEESSCCSCCCC--------SSSEEE-EEEBTTTBSCHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh--cccCCCCcEEEEccCcHHhhhhc--------ccccee-eeeeccccCCHHHHHHH
Confidence 45999999999999999998876 22221122 22222111111000 000000 00001111234457888
Q ss_pred HhcCCcEEEEEeCCCCChhhHHHHhhhcCCCCCCcEEEEecCChHHHhhc
Q 003890 287 YLTNKKYFIVLDDVFNDSDIWDDLEQVLPDNQNGSRVLITVTDLDLLESL 336 (788)
Q Consensus 287 ~l~~kr~LlVLDdvw~~~~~~~~l~~~l~~~~~gskIivTTR~~~v~~~~ 336 (788)
.|...+=+|++|.+. +.+.++.+.... ..|.-||+||-..+.+..+
T Consensus 192 aL~~~PdvillDEp~-d~e~~~~~~~~~---~~G~~vl~t~H~~~~~~~~ 237 (356)
T 3jvv_A 192 ALREDPDIILVGEMR-DLETIRLALTAA---ETGHLVFGTLHTTSAAKTI 237 (356)
T ss_dssp HTTSCCSEEEESCCC-SHHHHHHHHHHH---HTTCEEEEEESCSSHHHHH
T ss_pred HhhhCcCEEecCCCC-CHHHHHHHHHHH---hcCCEEEEEEccChHHHHH
Confidence 898888899999998 777666655442 2355699999887776544
No 265
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=94.59 E-value=0.031 Score=58.77 Aligned_cols=52 Identities=13% Similarity=0.013 Sum_probs=34.7
Q ss_pred HHHHHHhcCCCCcEEEEEEcCCCChHHHHHHHHHcccCccc---ccceeEEEEeCCCCC
Q 003890 196 ELFDLLIEGPSGLSVVAILNGSGFDKTAFAADTYNNNHIKF---YFDCLAWVRVSIAYD 251 (788)
Q Consensus 196 ~i~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~---~F~~~~wv~vs~~~~ 251 (788)
++++.+..-. .-..++|+|.+|+|||||++.+.+. +.. .+. ++++-+++...
T Consensus 163 raID~~~pi~-rGQr~~IvG~sG~GKTtLl~~Iar~--i~~~~~~v~-~I~~lIGER~~ 217 (422)
T 3ice_A 163 RVLDLASPIG-RGQRGLIVAPPKAGKTMLLQNIAQS--IAYNHPDCV-LMVLLIDERPE 217 (422)
T ss_dssp HHHHHHSCCB-TTCEEEEECCSSSSHHHHHHHHHHH--HHHHCTTSE-EEEEEESSCHH
T ss_pred eeeeeeeeec-CCcEEEEecCCCCChhHHHHHHHHH--HhhcCCCee-EEEEEecCChH
Confidence 4566665432 2458899999999999999988762 221 233 44577777643
No 266
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=94.55 E-value=0.016 Score=54.54 Aligned_cols=22 Identities=14% Similarity=0.173 Sum_probs=20.6
Q ss_pred EEEEEEcCCCChHHHHHHHHHc
Q 003890 209 SVVAILNGSGFDKTAFAADTYN 230 (788)
Q Consensus 209 ~vi~I~G~gGiGKTtLa~~v~~ 230 (788)
.+|.|.|++|+||||+|+.+..
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~ 25 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQS 25 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5789999999999999999988
No 267
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=94.54 E-value=0.06 Score=47.83 Aligned_cols=54 Identities=22% Similarity=0.261 Sum_probs=40.2
Q ss_pred cEEEecCCCCC--CCCccccCCCCccEEEecCCCCcccChh-hcCCCCCcEEEccCCCC
Q 003890 551 RILNLGSAVLV--QFPPGLENLFHLKYLKLNIPSLKCLPSL-LCTLLNLQTLEMPSSYV 606 (788)
Q Consensus 551 ~~L~L~~~~l~--~lp~~i~~L~~L~~L~L~~~~i~~lp~~-i~~L~~L~~L~L~~~~l 606 (788)
..++.+++.++ .+|..+. .+|++|+|++|.|+.+|.. +..+.+|++|+|++|.+
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 36778888887 7776543 3688888888888888664 57788888888888743
No 268
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=94.52 E-value=0.64 Score=50.19 Aligned_cols=24 Identities=17% Similarity=0.141 Sum_probs=21.4
Q ss_pred CcEEEEEEcCCCChHHHHHHHHHc
Q 003890 207 GLSVVAILNGSGFDKTAFAADTYN 230 (788)
Q Consensus 207 ~~~vi~I~G~gGiGKTtLa~~v~~ 230 (788)
...+|.++|.+|+||||++..+..
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~ 122 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLAR 122 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHH
Confidence 378999999999999999888776
No 269
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=94.51 E-value=0.017 Score=53.98 Aligned_cols=22 Identities=14% Similarity=0.092 Sum_probs=20.4
Q ss_pred EEEEEEcCCCChHHHHHHHHHc
Q 003890 209 SVVAILNGSGFDKTAFAADTYN 230 (788)
Q Consensus 209 ~vi~I~G~gGiGKTtLa~~v~~ 230 (788)
.+|.|.|+.|+||||+|+.+..
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~ 23 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSK 23 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999987
No 270
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=94.50 E-value=0.073 Score=57.90 Aligned_cols=104 Identities=14% Similarity=0.186 Sum_probs=62.9
Q ss_pred HHHHHHhcCCCCcEEEEEEcCCCChHHHHHHHHHcccCcccccceeEEEEeCCCCC-hHHHHHHHHHHcCCC-------C
Q 003890 196 ELFDLLIEGPSGLSVVAILNGSGFDKTAFAADTYNNNHIKFYFDCLAWVRVSIAYD-SGKILDDIIKSVMPP-------S 267 (788)
Q Consensus 196 ~i~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~-~~~~~~~il~~l~~~-------~ 267 (788)
++++.|..=. .-..++|+|..|+|||+|++.+.++. .+.+-+.++++-+++... +.++.+++...=... .
T Consensus 154 rvID~l~pig-kGqr~gIfgg~GvGKT~L~~~l~~~~-a~~~~~v~V~~~iGER~rEv~e~~~~~~~~~~l~~~~l~~~r 231 (498)
T 1fx0_B 154 KVVNLLAPYR-RGGKIGLFGGAGVGKTVLIMELINNI-AKAHGGVSVFGGVGERTREGNDLYMEMKESGVINEQNIAESK 231 (498)
T ss_dssp TTHHHHSCCC-TTCCEEEEECSSSSHHHHHHHHHHHT-TTTCSSCEEEEEESCCSHHHHHHHHHHHHTTSSCSSTTCCCC
T ss_pred eEeeeecccc-cCCeEEeecCCCCCchHHHHHHHHHH-HhhCCCEEEEEEcccCcHHHHHHHHhhhcccccccccccccc
Confidence 3556554322 23578999999999999999988741 223446788888888864 567777776542111 0
Q ss_pred CC------ccc--ccCCHHHHHHHHHHHhc---CCcEEEEEeCCC
Q 003890 268 RV------SVI--IGEDYKLKKTILRDYLT---NKKYFIVLDDVF 301 (788)
Q Consensus 268 ~~------~~~--~~~~~~~~~~~l~~~l~---~kr~LlVLDdvw 301 (788)
.. +.+ ...-.-...-.+.++++ |+.+|+++||+-
T Consensus 232 tvvV~~t~d~p~~~R~~~~~~altiAEyfrd~~G~dVLl~~Dsit 276 (498)
T 1fx0_B 232 VALVYGQMNEPPGARMRVGLTALTMAEYFRDVNEQDVLLFIDNIF 276 (498)
T ss_dssp EEEEEECTTSCHHHHTTHHHHHHHTHHHHTTTSCCEEEEEEECSH
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeccHH
Confidence 00 000 00111222334555553 589999999994
No 271
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=94.48 E-value=0.033 Score=62.71 Aligned_cols=46 Identities=15% Similarity=0.231 Sum_probs=35.5
Q ss_pred CCcccchhcHHHHHHHHhc----CCCCcEEEEEEcCCCChHHHHHHHHHc
Q 003890 185 LDISEFERGREELFDLLIE----GPSGLSVVAILNGSGFDKTAFAADTYN 230 (788)
Q Consensus 185 ~~~vGr~~~~~~i~~~L~~----~~~~~~vi~I~G~gGiGKTtLa~~v~~ 230 (788)
.+++|.+..++.+.+.+.- ..-...++.++|.+|+||||||+.++.
T Consensus 81 ~di~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~ 130 (543)
T 3m6a_A 81 EEHHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAK 130 (543)
T ss_dssp HHCSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHH
Confidence 4578888887777665532 122456899999999999999999998
No 272
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=94.46 E-value=0.025 Score=60.34 Aligned_cols=45 Identities=18% Similarity=0.125 Sum_probs=35.6
Q ss_pred CcccchhcHHHHHHHHh-------------cCCCCcEEEEEEcCCCChHHHHHHHHHc
Q 003890 186 DISEFERGREELFDLLI-------------EGPSGLSVVAILNGSGFDKTAFAADTYN 230 (788)
Q Consensus 186 ~~vGr~~~~~~i~~~L~-------------~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 230 (788)
.++|.+..++.+...+. ........+.++|++|+|||++|+.+++
T Consensus 16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~ 73 (363)
T 3hws_A 16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLAR 73 (363)
T ss_dssp HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHH
Confidence 36899999998888773 1111345788999999999999999998
No 273
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=94.46 E-value=0.02 Score=54.69 Aligned_cols=23 Identities=17% Similarity=0.189 Sum_probs=21.5
Q ss_pred cEEEEEEcCCCChHHHHHHHHHc
Q 003890 208 LSVVAILNGSGFDKTAFAADTYN 230 (788)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~ 230 (788)
-.+|+|+|++|+|||||++.+..
T Consensus 9 g~~i~l~G~~GsGKSTl~~~La~ 31 (191)
T 1zp6_A 9 GNILLLSGHPGSGKSTIAEALAN 31 (191)
T ss_dssp TEEEEEEECTTSCHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHh
Confidence 46899999999999999999987
No 274
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=94.42 E-value=0.061 Score=59.51 Aligned_cols=42 Identities=17% Similarity=0.111 Sum_probs=35.7
Q ss_pred CcccchhcHHHHHHHHhcCCCCcEEEEEEcCCCChHHHHHHHHHcc
Q 003890 186 DISEFERGREELFDLLIEGPSGLSVVAILNGSGFDKTAFAADTYNN 231 (788)
Q Consensus 186 ~~vGr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 231 (788)
.++|.+..++.+...+..+. -|-++|.+|+|||+||+.+.+.
T Consensus 23 ~ivGq~~~i~~l~~al~~~~----~VLL~GpPGtGKT~LAraLa~~ 64 (500)
T 3nbx_X 23 GLYERSHAIRLCLLAALSGE----SVFLLGPPGIAKSLIARRLKFA 64 (500)
T ss_dssp TCSSCHHHHHHHHHHHHHTC----EEEEECCSSSSHHHHHHHGGGG
T ss_pred hhHHHHHHHHHHHHHHhcCC----eeEeecCchHHHHHHHHHHHHH
Confidence 38899999988888876543 5779999999999999999983
No 275
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=94.39 E-value=0.068 Score=57.89 Aligned_cols=65 Identities=20% Similarity=0.248 Sum_probs=44.8
Q ss_pred HHHHHHhcCCCCcEEEEEEcCCCChHHHHHHHHHcccCcccccceeEEEEeCCCCC-hHHHHHHHHHH
Q 003890 196 ELFDLLIEGPSGLSVVAILNGSGFDKTAFAADTYNNNHIKFYFDCLAWVRVSIAYD-SGKILDDIIKS 262 (788)
Q Consensus 196 ~i~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~-~~~~~~~il~~ 262 (788)
++++.|..=. .-..++|+|..|+|||+|++.+.+.. .+.+-+.++++-+++... +.++.+++...
T Consensus 142 r~ID~l~pig-kGQr~~Ifgg~G~GKT~L~~~i~~~~-~~~~~~v~V~~~iGER~rEv~e~~~~~~~~ 207 (482)
T 2ck3_D 142 KVVDLLAPYA-KGGKIGLFGGAGVGKTVLIMELINNV-AKAHGGYSVFAGVGERTREGNDLYHEMIES 207 (482)
T ss_dssp HHHHHHSCEE-TTCEEEEEECTTSSHHHHHHHHHHHT-TTTCSSEEEEEEESCCHHHHHHHHHHHHHH
T ss_pred EEEecccccc-cCCeeeeecCCCCChHHHHHHHHHhh-HhhCCCEEEEEECCCcchHHHHHHHHhhhc
Confidence 5666665321 23578999999999999999988741 223335577888888754 56677777654
No 276
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=94.38 E-value=0.02 Score=55.18 Aligned_cols=23 Identities=13% Similarity=0.082 Sum_probs=21.4
Q ss_pred cEEEEEEcCCCChHHHHHHHHHc
Q 003890 208 LSVVAILNGSGFDKTAFAADTYN 230 (788)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~ 230 (788)
..+|.|+|++|+||||+|+.+..
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 56899999999999999999987
No 277
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=94.32 E-value=0.052 Score=48.22 Aligned_cols=55 Identities=13% Similarity=0.208 Sum_probs=45.7
Q ss_pred cEEEecCCCCc--ccChhhcCCCCCcEEEccCCCCcccchh-hhcccccceeeccCccCC
Q 003890 574 KYLKLNIPSLK--CLPSLLCTLLNLQTLEMPSSYVDQSPED-IWMMQKLMHLNFGSITLP 630 (788)
Q Consensus 574 ~~L~L~~~~i~--~lp~~i~~L~~L~~L~L~~~~l~~lp~~-l~~L~~L~~L~l~~~~~~ 630 (788)
..++.+++.++ .+|..+. .+|++|+|++|.+..+|.+ |..+++|+.|+|++|.+.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 47788888888 8887653 3799999999999999874 788999999999987543
No 278
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=94.32 E-value=0.036 Score=61.01 Aligned_cols=47 Identities=19% Similarity=0.097 Sum_probs=36.4
Q ss_pred CCcccchhcHHHHHHH---HhcCCCCcEEEEEEcCCCChHHHHHHHHHcc
Q 003890 185 LDISEFERGREELFDL---LIEGPSGLSVVAILNGSGFDKTAFAADTYNN 231 (788)
Q Consensus 185 ~~~vGr~~~~~~i~~~---L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 231 (788)
.+++|.+..++.+..+ +..+....+-+-++|++|+|||++|+.+.+.
T Consensus 37 ~~iiG~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~~ 86 (456)
T 2c9o_A 37 SGLVGQENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQE 86 (456)
T ss_dssp TTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEECCTTSSHHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHHHhCCCCCCeEEEECCCcCCHHHHHHHHHHH
Confidence 7899999888765444 4444333456789999999999999999983
No 279
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=94.28 E-value=0.078 Score=54.73 Aligned_cols=91 Identities=12% Similarity=-0.010 Sum_probs=47.4
Q ss_pred CcEEEEEEcCCCChHHHHHHHHHcccCcccccceeEEEEeCCCCCh--HHHHHHHHHHcCCCCCCcccccCCHHHH-HHH
Q 003890 207 GLSVVAILNGSGFDKTAFAADTYNNNHIKFYFDCLAWVRVSIAYDS--GKILDDIIKSVMPPSRVSVIIGEDYKLK-KTI 283 (788)
Q Consensus 207 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~--~~~~~~il~~l~~~~~~~~~~~~~~~~~-~~~ 283 (788)
...+|+|+|.+|+||||++..+..- ....=..+.++... .+.. .+-+...++..+..... .....+...+ ...
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~~--l~~~g~kV~lv~~D-~~r~~a~eqL~~~~~~~gl~~~~-~~s~~~~~~v~~~a 178 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAKM--FVDEGKSVVLAAAD-TFRAAAIEQLKIWGERVGATVIS-HSEGADPAAVAFDA 178 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHH--HHHTTCCEEEEEEC-TTCHHHHHHHHHHHHHHTCEEEC-CSTTCCHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHHH--HHhcCCEEEEEccc-cccHHHHHHHHHHHHHcCCcEEe-cCCccCHHHHHHHH
Confidence 3679999999999999999988863 22221124444432 2222 12233444444332110 0011222222 334
Q ss_pred HHHHhcCCcEEEEEeCCC
Q 003890 284 LRDYLTNKKYFIVLDDVF 301 (788)
Q Consensus 284 l~~~l~~kr~LlVLDdvw 301 (788)
+...+....-++|+|-.-
T Consensus 179 l~~a~~~~~dvvIiDtpg 196 (306)
T 1vma_A 179 VAHALARNKDVVIIDTAG 196 (306)
T ss_dssp HHHHHHTTCSEEEEEECC
T ss_pred HHHHHhcCCCEEEEECCC
Confidence 555555555588889764
No 280
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=94.24 E-value=0.024 Score=53.39 Aligned_cols=22 Identities=14% Similarity=0.308 Sum_probs=20.5
Q ss_pred EEEEEEcCCCChHHHHHHHHHc
Q 003890 209 SVVAILNGSGFDKTAFAADTYN 230 (788)
Q Consensus 209 ~vi~I~G~gGiGKTtLa~~v~~ 230 (788)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 5789999999999999999987
No 281
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=94.24 E-value=0.11 Score=54.95 Aligned_cols=94 Identities=11% Similarity=0.124 Sum_probs=52.9
Q ss_pred CcEEEEEEcCCCChHHHHHHHHHcccCccccc----ceeEEEEeCCCCChHHHHHHHHHHcCCCCCC--------ccccc
Q 003890 207 GLSVVAILNGSGFDKTAFAADTYNNNHIKFYF----DCLAWVRVSIAYDSGKILDDIIKSVMPPSRV--------SVIIG 274 (788)
Q Consensus 207 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F----~~~~wv~vs~~~~~~~~~~~il~~l~~~~~~--------~~~~~ 274 (788)
.-.++.|+|.+|+|||||+..++......... ..++|++....+...++ ..+....+..... .....
T Consensus 130 ~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~~i-~~i~q~~~~~~~~v~~ni~~~~~~~~ 208 (349)
T 1pzn_A 130 TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERI-REIAQNRGLDPDEVLKHIYVARAFNS 208 (349)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHHH-HHHHHTTTCCHHHHGGGEEEEECCSH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCHHHH-HHHHHHcCCCHHHHhhCEEEEecCCh
Confidence 46799999999999999999988742112111 23588877655443333 2344433321100 00001
Q ss_pred CCHHHHHHHHHHHhc------CCcEEEEEeCCC
Q 003890 275 EDYKLKKTILRDYLT------NKKYFIVLDDVF 301 (788)
Q Consensus 275 ~~~~~~~~~l~~~l~------~kr~LlVLDdvw 301 (788)
....++...+...+. .+.-+||+|.+-
T Consensus 209 ~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~t 241 (349)
T 1pzn_A 209 NHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLT 241 (349)
T ss_dssp HHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSS
T ss_pred HHHHHHHHHHHHHHHHhccccCCCCEEEEeCch
Confidence 112334444555553 467799999985
No 282
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=94.24 E-value=0.047 Score=59.31 Aligned_cols=62 Identities=16% Similarity=0.217 Sum_probs=38.9
Q ss_pred HHHHHhcCCCCcEEEEEEcCCCChHHHHHHHHHcccCccccc-ceeEEEEeCCCCC-hHHHHHHHHH
Q 003890 197 LFDLLIEGPSGLSVVAILNGSGFDKTAFAADTYNNNHIKFYF-DCLAWVRVSIAYD-SGKILDDIIK 261 (788)
Q Consensus 197 i~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F-~~~~wv~vs~~~~-~~~~~~~il~ 261 (788)
.++.|..-. .-..++|+|.+|+|||||++.+..+ ....+ +.++++-+++... ..++.+++..
T Consensus 141 ~ID~L~pi~-kGq~~~i~G~sGvGKTtL~~~l~~~--~~~~~~~i~V~~~iGerttev~el~~~l~~ 204 (473)
T 1sky_E 141 VVDLLAPYI-KGGKIGLFGGAGVGKTVLIQELIHN--IAQEHGGISVFAGVGERTREGNDLYHEMKD 204 (473)
T ss_dssp HHHHHSCEE-TTCEEEEECCSSSCHHHHHHHHHHH--HHHHTCCCEEEEEESSCHHHHHHHHHHHHH
T ss_pred HHHHHhhhc-cCCEEEEECCCCCCccHHHHHHHhh--hhhccCcEEEEeeeccCchHHHHHHHHhhh
Confidence 456564321 1236889999999999999998874 22222 3356777777653 4455554543
No 283
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=94.18 E-value=0.023 Score=53.72 Aligned_cols=23 Identities=9% Similarity=0.213 Sum_probs=21.1
Q ss_pred cEEEEEEcCCCChHHHHHHHHHc
Q 003890 208 LSVVAILNGSGFDKTAFAADTYN 230 (788)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~ 230 (788)
-++++|+|+.|+|||||++.+..
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~ 27 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLIT 27 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 35899999999999999999987
No 284
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=94.18 E-value=0.03 Score=56.23 Aligned_cols=47 Identities=21% Similarity=0.203 Sum_probs=33.6
Q ss_pred CCcccchhcHHHHHHHHhc--C-------C-CCcEEEEEEcCCCChHHHHHHHHHcc
Q 003890 185 LDISEFERGREELFDLLIE--G-------P-SGLSVVAILNGSGFDKTAFAADTYNN 231 (788)
Q Consensus 185 ~~~vGr~~~~~~i~~~L~~--~-------~-~~~~vi~I~G~gGiGKTtLa~~v~~~ 231 (788)
.+++|.+..+.++.+.... . + .-.+-+.|+|.+|+||||||+.++..
T Consensus 16 ~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 16 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHH
T ss_pred HHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 7889988777666554421 1 0 01122889999999999999999984
No 285
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=94.16 E-value=0.12 Score=53.84 Aligned_cols=24 Identities=25% Similarity=0.138 Sum_probs=21.9
Q ss_pred CcEEEEEEcCCCChHHHHHHHHHc
Q 003890 207 GLSVVAILNGSGFDKTAFAADTYN 230 (788)
Q Consensus 207 ~~~vi~I~G~gGiGKTtLa~~v~~ 230 (788)
...+++|+|..|+||||+++.+..
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag 151 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLAN 151 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 468999999999999999998886
No 286
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=94.16 E-value=0.074 Score=56.18 Aligned_cols=88 Identities=14% Similarity=-0.012 Sum_probs=54.0
Q ss_pred CcEEEEEEcCCCChHHHHHHHHHcccCcccccceeEEEEeCCCCChHHHHHHHHHHcCCCCCCc-ccccCCHHHHHHHHH
Q 003890 207 GLSVVAILNGSGFDKTAFAADTYNNNHIKFYFDCLAWVRVSIAYDSGKILDDIIKSVMPPSRVS-VIIGEDYKLKKTILR 285 (788)
Q Consensus 207 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~~l~~~~~~~-~~~~~~~~~~~~~l~ 285 (788)
.-+++.|.|.+|+||||||.++.... ...=..++|++....++... +..++.....- ..+..+.++....++
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~~~--~~~g~~vlyid~E~s~~~~~-----a~~~g~~~~~l~i~~~~~~e~~~~~~~ 134 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIAAA--QREGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICD 134 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHH--HHTTCCEEEEESSCCCCHHH-----HHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH--HHCCCeEEEEeCCCCccHHH-----HHHcCCChhheeeeCCCCHHHHHHHHH
Confidence 35689999999999999998887632 22212588998877766432 34444322100 012234556655555
Q ss_pred HHhc-CCcEEEEEeCCC
Q 003890 286 DYLT-NKKYFIVLDDVF 301 (788)
Q Consensus 286 ~~l~-~kr~LlVLDdvw 301 (788)
...+ ++--+||+|.+.
T Consensus 135 ~l~~~~~~~lVVIDsl~ 151 (356)
T 1u94_A 135 ALARSGAVDVIVVDSVA 151 (356)
T ss_dssp HHHHHTCCSEEEEECGG
T ss_pred HHHhccCCCEEEEcCHH
Confidence 4443 455599999884
No 287
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=94.12 E-value=0.019 Score=53.72 Aligned_cols=22 Identities=9% Similarity=0.140 Sum_probs=20.5
Q ss_pred EEEEEEcCCCChHHHHHHHHHc
Q 003890 209 SVVAILNGSGFDKTAFAADTYN 230 (788)
Q Consensus 209 ~vi~I~G~gGiGKTtLa~~v~~ 230 (788)
.+|+|+|+.|+||||+++.+..
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~ 26 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQ 26 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999987
No 288
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=94.06 E-value=0.43 Score=48.71 Aligned_cols=23 Identities=17% Similarity=0.203 Sum_probs=21.3
Q ss_pred cEEEEEEcCCCChHHHHHHHHHc
Q 003890 208 LSVVAILNGSGFDKTAFAADTYN 230 (788)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~ 230 (788)
-.+++|+|..|+|||||.+.+..
T Consensus 64 Ge~~~i~G~NGsGKSTLlk~l~G 86 (290)
T 2bbs_A 64 GQLLAVAGSTGAGKTSLLMMIMG 86 (290)
T ss_dssp TCEEEEEESTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCcHHHHHHHHhc
Confidence 46899999999999999999987
No 289
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=93.97 E-value=0.033 Score=58.44 Aligned_cols=42 Identities=12% Similarity=-0.018 Sum_probs=35.9
Q ss_pred CCcccchhcHHHHHHHHhcCCCCcEEEEEEcCCCChHHHHHHHHHc
Q 003890 185 LDISEFERGREELFDLLIEGPSGLSVVAILNGSGFDKTAFAADTYN 230 (788)
Q Consensus 185 ~~~vGr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 230 (788)
..++|++..++.+...+..+. -+-++|.+|+|||+||+.+.+
T Consensus 27 ~~i~g~~~~~~~l~~~l~~~~----~vll~G~pGtGKT~la~~la~ 68 (331)
T 2r44_A 27 KVVVGQKYMINRLLIGICTGG----HILLEGVPGLAKTLSVNTLAK 68 (331)
T ss_dssp TTCCSCHHHHHHHHHHHHHTC----CEEEESCCCHHHHHHHHHHHH
T ss_pred cceeCcHHHHHHHHHHHHcCC----eEEEECCCCCcHHHHHHHHHH
Confidence 458899999999888887642 577899999999999999988
No 290
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=93.94 E-value=0.046 Score=57.11 Aligned_cols=44 Identities=14% Similarity=0.228 Sum_probs=32.4
Q ss_pred cccchhcHHHHHHHHhcC--CCCcEEEEEEcCCCChHHHHHHHHHc
Q 003890 187 ISEFERGREELFDLLIEG--PSGLSVVAILNGSGFDKTAFAADTYN 230 (788)
Q Consensus 187 ~vGr~~~~~~i~~~L~~~--~~~~~vi~I~G~gGiGKTtLa~~v~~ 230 (788)
||+.+.-.+++++.+... ......|.|+|++|+||||+++.++.
T Consensus 1 ~~~~~~L~~~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~ 46 (359)
T 2ga8_A 1 MVDTHKLADDVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQ 46 (359)
T ss_dssp -CCHHHHHHHHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHH
Confidence 345566677777776432 22466799999999999999998887
No 291
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=93.92 E-value=0.038 Score=51.85 Aligned_cols=23 Identities=22% Similarity=0.309 Sum_probs=21.3
Q ss_pred cEEEEEEcCCCChHHHHHHHHHc
Q 003890 208 LSVVAILNGSGFDKTAFAADTYN 230 (788)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~ 230 (788)
-.+|+|+|+.|+||||+++.+..
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHH
Confidence 57899999999999999999987
No 292
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=93.90 E-value=0.15 Score=55.10 Aligned_cols=24 Identities=17% Similarity=0.063 Sum_probs=21.6
Q ss_pred CcEEEEEEcCCCChHHHHHHHHHc
Q 003890 207 GLSVVAILNGSGFDKTAFAADTYN 230 (788)
Q Consensus 207 ~~~vi~I~G~gGiGKTtLa~~v~~ 230 (788)
...+|.++|.+|+||||++..+..
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~ 119 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAY 119 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 468999999999999999988876
No 293
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=93.89 E-value=0.034 Score=53.54 Aligned_cols=24 Identities=21% Similarity=0.131 Sum_probs=22.1
Q ss_pred CcEEEEEEcCCCChHHHHHHHHHc
Q 003890 207 GLSVVAILNGSGFDKTAFAADTYN 230 (788)
Q Consensus 207 ~~~vi~I~G~gGiGKTtLa~~v~~ 230 (788)
.-.+|+|+|+.|+||||+|+.+..
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~ 47 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQ 47 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 367999999999999999999987
No 294
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=93.89 E-value=0.027 Score=53.40 Aligned_cols=23 Identities=17% Similarity=0.226 Sum_probs=21.0
Q ss_pred cEEEEEEcCCCChHHHHHHHHHc
Q 003890 208 LSVVAILNGSGFDKTAFAADTYN 230 (788)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~ 230 (788)
.+.|.|+|++|+||||+|+.+..
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 45788999999999999999987
No 295
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=93.83 E-value=0.21 Score=51.80 Aligned_cols=98 Identities=8% Similarity=-0.043 Sum_probs=52.1
Q ss_pred ccchhcHHHHHHHHhcC--CCCcEEEEEEcCCCChHHHHHHHHHcccCccccc--ceeEEEEeCCCCChHHHHHHHHHHc
Q 003890 188 SEFERGREELFDLLIEG--PSGLSVVAILNGSGFDKTAFAADTYNNNHIKFYF--DCLAWVRVSIAYDSGKILDDIIKSV 263 (788)
Q Consensus 188 vGr~~~~~~i~~~L~~~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F--~~~~wv~vs~~~~~~~~~~~il~~l 263 (788)
+|-......+...+... .....+|+|.|..|+||||||+.+..- ..... ..+..+....-+-....+. ..
T Consensus 70 ~~~~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~l--l~~~~~~~~v~~i~~D~f~~~~~~l~----~~ 143 (321)
T 3tqc_A 70 VTARQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKAL--LSRWPDHPNVEVITTDGFLYSNAKLE----KQ 143 (321)
T ss_dssp HHHHHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHH--HTTSTTCCCEEEEEGGGGBCCHHHHH----HT
T ss_pred hcchHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHH--hcccCCCCeEEEEeecccccchhhhh----hH
Confidence 34334444444444433 345679999999999999999998762 22111 1244444433222122111 11
Q ss_pred CCCCCCcccccCCHHHHHHHHHHHhcCC
Q 003890 264 MPPSRVSVIIGEDYKLKKTILRDYLTNK 291 (788)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~l~~~l~~k 291 (788)
+.......+...+.+.+...+.....++
T Consensus 144 ~~~~~~g~P~~~D~~~l~~~L~~L~~g~ 171 (321)
T 3tqc_A 144 GLMKRKGFPESYDMPSLLRVLNAIKSGQ 171 (321)
T ss_dssp TCGGGTTSGGGBCHHHHHHHHHHHHTTC
T ss_pred HHHhhccCcccccHHHHHHHHHhhhccc
Confidence 1111111235667777777777776666
No 296
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=93.72 E-value=0.032 Score=52.26 Aligned_cols=23 Identities=35% Similarity=0.644 Sum_probs=20.1
Q ss_pred cEEEEEEcCCCChHHHHHHHHHc
Q 003890 208 LSVVAILNGSGFDKTAFAADTYN 230 (788)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~ 230 (788)
-.+++|+|..|+|||||++..+.
T Consensus 9 gei~~l~G~nGsGKSTl~~~~~~ 31 (171)
T 4gp7_A 9 LSLVVLIGSSGSGKSTFAKKHFK 31 (171)
T ss_dssp SEEEEEECCTTSCHHHHHHHHSC
T ss_pred CEEEEEECCCCCCHHHHHHHHcc
Confidence 46899999999999999997554
No 297
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=93.69 E-value=0.033 Score=53.69 Aligned_cols=23 Identities=22% Similarity=0.202 Sum_probs=21.0
Q ss_pred cEEEEEEcCCCChHHHHHHHHHc
Q 003890 208 LSVVAILNGSGFDKTAFAADTYN 230 (788)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~ 230 (788)
-.+++|+|+.|+|||||++.+..
T Consensus 7 g~ii~l~Gp~GsGKSTl~~~L~~ 29 (205)
T 3tr0_A 7 ANLFIISAPSGAGKTSLVRALVK 29 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECcCCCCHHHHHHHHHh
Confidence 35899999999999999999987
No 298
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=93.67 E-value=0.036 Score=52.73 Aligned_cols=22 Identities=14% Similarity=0.131 Sum_probs=20.2
Q ss_pred EEEEEEcCCCChHHHHHHHHHc
Q 003890 209 SVVAILNGSGFDKTAFAADTYN 230 (788)
Q Consensus 209 ~vi~I~G~gGiGKTtLa~~v~~ 230 (788)
.+++|+|+.|+|||||++.+..
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 4789999999999999999975
No 299
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=93.67 E-value=0.028 Score=53.40 Aligned_cols=22 Identities=18% Similarity=0.279 Sum_probs=19.9
Q ss_pred EEEEEEcCCCChHHHHHHHHHc
Q 003890 209 SVVAILNGSGFDKTAFAADTYN 230 (788)
Q Consensus 209 ~vi~I~G~gGiGKTtLa~~v~~ 230 (788)
+.|.|+|++|+|||||++.+..
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~ 23 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4578999999999999999987
No 300
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=93.66 E-value=0.031 Score=53.84 Aligned_cols=23 Identities=26% Similarity=0.264 Sum_probs=21.4
Q ss_pred cEEEEEEcCCCChHHHHHHHHHc
Q 003890 208 LSVVAILNGSGFDKTAFAADTYN 230 (788)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~ 230 (788)
-.+|+|+|+.|+|||||++.+..
T Consensus 29 g~~i~l~G~~GsGKSTl~~~L~~ 51 (200)
T 4eun_A 29 TRHVVVMGVSGSGKTTIAHGVAD 51 (200)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 56899999999999999999987
No 301
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=93.66 E-value=0.2 Score=53.66 Aligned_cols=93 Identities=9% Similarity=0.037 Sum_probs=52.1
Q ss_pred cEEEEEEcCCCChHHHHHHHHHcccCccc----ccceeEEEEeCCCCChHHHHHHHHHHcCCCCCC-----cccccCCHH
Q 003890 208 LSVVAILNGSGFDKTAFAADTYNNNHIKF----YFDCLAWVRVSIAYDSGKILDDIIKSVMPPSRV-----SVIIGEDYK 278 (788)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~----~F~~~~wv~vs~~~~~~~~~~~il~~l~~~~~~-----~~~~~~~~~ 278 (788)
-.++.|+|.+|+|||||+..++-...... .-..++|++....++..++. .+.+.++..... ......+.+
T Consensus 178 Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~-~~a~~~gl~~~~vleni~~~~~~~~~ 256 (400)
T 3lda_A 178 GSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLV-SIAQRFGLDPDDALNNVAYARAYNAD 256 (400)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHH-HHHHHTTCCHHHHHHTEEEEECCSHH
T ss_pred CcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHH-HHHHHcCCChHhHhhcEEEeccCChH
Confidence 46999999999999999997653211211 22358888876666555443 355555532110 000122222
Q ss_pred H---HHHHHHHHh-cCCcEEEEEeCCC
Q 003890 279 L---KKTILRDYL-TNKKYFIVLDDVF 301 (788)
Q Consensus 279 ~---~~~~l~~~l-~~kr~LlVLDdvw 301 (788)
. ....+.+.+ ..+.-+||+|.+-
T Consensus 257 ~~~~~l~~~~~~l~~~~~~llVIDs~t 283 (400)
T 3lda_A 257 HQLRLLDAAAQMMSESRFSLIVVDSVM 283 (400)
T ss_dssp HHHHHHHHHHHHHHHSCEEEEEEETGG
T ss_pred HHHHHHHHHHHHHHhcCCceEEecchh
Confidence 2 223333333 2456788999874
No 302
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=93.65 E-value=0.034 Score=52.97 Aligned_cols=22 Identities=14% Similarity=0.152 Sum_probs=20.5
Q ss_pred EEEEEEcCCCChHHHHHHHHHc
Q 003890 209 SVVAILNGSGFDKTAFAADTYN 230 (788)
Q Consensus 209 ~vi~I~G~gGiGKTtLa~~v~~ 230 (788)
.+|.|.|++|+||||+|+.+..
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5789999999999999999987
No 303
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=93.62 E-value=0.026 Score=54.49 Aligned_cols=23 Identities=13% Similarity=0.199 Sum_probs=21.2
Q ss_pred cEEEEEEcCCCChHHHHHHHHHc
Q 003890 208 LSVVAILNGSGFDKTAFAADTYN 230 (788)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~ 230 (788)
..+|.|.|+.|+||||+|+.+..
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~ 40 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAE 40 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999999987
No 304
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=93.49 E-value=0.16 Score=55.12 Aligned_cols=25 Identities=20% Similarity=0.250 Sum_probs=22.5
Q ss_pred CcEEEEEEcCCCChHHHHHHHHHcc
Q 003890 207 GLSVVAILNGSGFDKTAFAADTYNN 231 (788)
Q Consensus 207 ~~~vi~I~G~gGiGKTtLa~~v~~~ 231 (788)
...+|.|+|++|+||||+|+.+...
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~~ 281 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLVS 281 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTGG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHh
Confidence 4679999999999999999999873
No 305
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=93.46 E-value=0.041 Score=52.45 Aligned_cols=23 Identities=9% Similarity=0.124 Sum_probs=21.2
Q ss_pred cEEEEEEcCCCChHHHHHHHHHc
Q 003890 208 LSVVAILNGSGFDKTAFAADTYN 230 (788)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~ 230 (788)
..+|.|.|++|+||||+|+.+..
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 56899999999999999999987
No 306
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=93.46 E-value=0.037 Score=51.54 Aligned_cols=23 Identities=13% Similarity=0.156 Sum_probs=21.0
Q ss_pred cEEEEEEcCCCChHHHHHHHHHc
Q 003890 208 LSVVAILNGSGFDKTAFAADTYN 230 (788)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~ 230 (788)
..+|+|.|+.|+||||+|+.+..
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHH
T ss_pred cceEEEECCCCCCHHHHHHHHHH
Confidence 67999999999999999999987
No 307
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=93.45 E-value=0.044 Score=53.08 Aligned_cols=24 Identities=17% Similarity=0.141 Sum_probs=22.1
Q ss_pred CcEEEEEEcCCCChHHHHHHHHHc
Q 003890 207 GLSVVAILNGSGFDKTAFAADTYN 230 (788)
Q Consensus 207 ~~~vi~I~G~gGiGKTtLa~~v~~ 230 (788)
...+|+|+|++|+||||+|+.+..
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~ 43 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQK 43 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999999987
No 308
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=93.44 E-value=0.037 Score=53.23 Aligned_cols=21 Identities=24% Similarity=0.371 Sum_probs=19.8
Q ss_pred EEEEEcCCCChHHHHHHHHHc
Q 003890 210 VVAILNGSGFDKTAFAADTYN 230 (788)
Q Consensus 210 vi~I~G~gGiGKTtLa~~v~~ 230 (788)
.|+|.|+.|+||||+|+.+..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 689999999999999999987
No 309
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=93.42 E-value=0.032 Score=53.10 Aligned_cols=22 Identities=18% Similarity=0.279 Sum_probs=20.5
Q ss_pred EEEEEEcCCCChHHHHHHHHHc
Q 003890 209 SVVAILNGSGFDKTAFAADTYN 230 (788)
Q Consensus 209 ~vi~I~G~gGiGKTtLa~~v~~ 230 (788)
++++|+|+.|+|||||++.+..
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~ 23 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 5789999999999999999987
No 310
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=93.40 E-value=0.038 Score=52.49 Aligned_cols=22 Identities=18% Similarity=0.199 Sum_probs=20.5
Q ss_pred EEEEEEcCCCChHHHHHHHHHc
Q 003890 209 SVVAILNGSGFDKTAFAADTYN 230 (788)
Q Consensus 209 ~vi~I~G~gGiGKTtLa~~v~~ 230 (788)
.+|.|.|++|+||||+|+.+..
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999987
No 311
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=93.38 E-value=0.043 Score=53.29 Aligned_cols=24 Identities=25% Similarity=0.237 Sum_probs=21.8
Q ss_pred CcEEEEEEcCCCChHHHHHHHHHc
Q 003890 207 GLSVVAILNGSGFDKTAFAADTYN 230 (788)
Q Consensus 207 ~~~vi~I~G~gGiGKTtLa~~v~~ 230 (788)
...+|+|+|..|+|||||++.+..
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~ 28 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALAR 28 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHH
Confidence 357999999999999999999987
No 312
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=93.37 E-value=0.042 Score=51.85 Aligned_cols=22 Identities=18% Similarity=0.276 Sum_probs=19.9
Q ss_pred EEEEEcCCCChHHHHHHHHHcc
Q 003890 210 VVAILNGSGFDKTAFAADTYNN 231 (788)
Q Consensus 210 vi~I~G~gGiGKTtLa~~v~~~ 231 (788)
.++|+|..|+|||||++.+...
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~ 23 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999998864
No 313
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=93.36 E-value=0.044 Score=52.99 Aligned_cols=22 Identities=27% Similarity=0.292 Sum_probs=20.4
Q ss_pred EEEEEEcCCCChHHHHHHHHHc
Q 003890 209 SVVAILNGSGFDKTAFAADTYN 230 (788)
Q Consensus 209 ~vi~I~G~gGiGKTtLa~~v~~ 230 (788)
.+|+|+|+.|+||||+++.+..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999976
No 314
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=93.34 E-value=0.043 Score=55.97 Aligned_cols=47 Identities=21% Similarity=0.203 Sum_probs=34.2
Q ss_pred CCcccchhcHHHHHHHHhc--C-------C-CCcEEEEEEcCCCChHHHHHHHHHcc
Q 003890 185 LDISEFERGREELFDLLIE--G-------P-SGLSVVAILNGSGFDKTAFAADTYNN 231 (788)
Q Consensus 185 ~~~vGr~~~~~~i~~~L~~--~-------~-~~~~vi~I~G~gGiGKTtLa~~v~~~ 231 (788)
.+++|.+..++++.+.... . + .-.+-+.|+|.+|+||||||+.++..
T Consensus 40 ~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 40 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp GGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred HHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHH
Confidence 7899998877776655421 1 0 01122889999999999999999984
No 315
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=93.34 E-value=0.037 Score=53.40 Aligned_cols=22 Identities=14% Similarity=0.148 Sum_probs=20.3
Q ss_pred EEEEEEcCCCChHHHHHHHHHc
Q 003890 209 SVVAILNGSGFDKTAFAADTYN 230 (788)
Q Consensus 209 ~vi~I~G~gGiGKTtLa~~v~~ 230 (788)
.+|+|+|+.|+||||+++.+..
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 4799999999999999999986
No 316
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=93.32 E-value=0.034 Score=52.43 Aligned_cols=23 Identities=17% Similarity=0.300 Sum_probs=20.9
Q ss_pred cEEEEEEcCCCChHHHHHHHHHc
Q 003890 208 LSVVAILNGSGFDKTAFAADTYN 230 (788)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~ 230 (788)
.++|.|+|++|+||||+|+.+..
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELAS 33 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHH
Confidence 45788999999999999999987
No 317
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=93.31 E-value=0.042 Score=55.19 Aligned_cols=22 Identities=18% Similarity=0.055 Sum_probs=20.5
Q ss_pred EEEEEEcCCCChHHHHHHHHHc
Q 003890 209 SVVAILNGSGFDKTAFAADTYN 230 (788)
Q Consensus 209 ~vi~I~G~gGiGKTtLa~~v~~ 230 (788)
.+|.|.|++|+||||||+.+..
T Consensus 2 ~li~I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHh
Confidence 5789999999999999999987
No 318
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=93.31 E-value=0.044 Score=53.22 Aligned_cols=23 Identities=13% Similarity=0.216 Sum_probs=21.5
Q ss_pred cEEEEEEcCCCChHHHHHHHHHc
Q 003890 208 LSVVAILNGSGFDKTAFAADTYN 230 (788)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~ 230 (788)
-.+|+|+|+.|+|||||++.+..
T Consensus 8 g~~i~l~GpsGsGKsTl~~~L~~ 30 (208)
T 3tau_A 8 GLLIVLSGPSGVGKGTVREAVFK 30 (208)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECcCCCCHHHHHHHHHh
Confidence 56899999999999999999987
No 319
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=93.30 E-value=0.056 Score=57.82 Aligned_cols=46 Identities=13% Similarity=0.050 Sum_probs=35.1
Q ss_pred CCcccchhcHHHHHHHHhc----------------------------CCCCcEEEEEEcCCCChHHHHHHHHHc
Q 003890 185 LDISEFERGREELFDLLIE----------------------------GPSGLSVVAILNGSGFDKTAFAADTYN 230 (788)
Q Consensus 185 ~~~vGr~~~~~~i~~~L~~----------------------------~~~~~~vi~I~G~gGiGKTtLa~~v~~ 230 (788)
..++|.+..++.+...+.. .......+-++|.+|+|||++|+.+++
T Consensus 21 ~~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~ 94 (376)
T 1um8_A 21 NYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAK 94 (376)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHH
T ss_pred hHccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHH
Confidence 4578998888888877620 011234678999999999999999998
No 320
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=93.27 E-value=0.041 Score=54.08 Aligned_cols=22 Identities=23% Similarity=0.237 Sum_probs=20.6
Q ss_pred EEEEEEcCCCChHHHHHHHHHc
Q 003890 209 SVVAILNGSGFDKTAFAADTYN 230 (788)
Q Consensus 209 ~vi~I~G~gGiGKTtLa~~v~~ 230 (788)
.+|+|+|+.|+||||+|+.+..
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999986
No 321
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=93.27 E-value=0.046 Score=52.53 Aligned_cols=24 Identities=21% Similarity=0.152 Sum_probs=22.4
Q ss_pred CcEEEEEEcCCCChHHHHHHHHHc
Q 003890 207 GLSVVAILNGSGFDKTAFAADTYN 230 (788)
Q Consensus 207 ~~~vi~I~G~gGiGKTtLa~~v~~ 230 (788)
...+|+|+|+.|+||||+|+.+..
T Consensus 7 ~~~~I~i~G~~GsGKST~~~~La~ 30 (203)
T 1uf9_A 7 HPIIIGITGNIGSGKSTVAALLRS 30 (203)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 468999999999999999999987
No 322
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=93.27 E-value=0.034 Score=58.72 Aligned_cols=46 Identities=13% Similarity=0.026 Sum_probs=34.0
Q ss_pred CCCcccchhcHHHHHHHHhcCCCCcEEEEEEcCCCChHHHHHHHHHcc
Q 003890 184 RLDISEFERGREELFDLLIEGPSGLSVVAILNGSGFDKTAFAADTYNN 231 (788)
Q Consensus 184 ~~~~vGr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 231 (788)
+.+++|.+..++.+...+.... ..-+-|+|.+|+|||++|+.+.+.
T Consensus 23 f~~i~G~~~~~~~l~~~~~~~~--~~~vLl~G~~GtGKT~la~~la~~ 68 (350)
T 1g8p_A 23 FSAIVGQEDMKLALLLTAVDPG--IGGVLVFGDRGTGKSTAVRALAAL 68 (350)
T ss_dssp GGGSCSCHHHHHHHHHHHHCGG--GCCEEEECCGGGCTTHHHHHHHHH
T ss_pred chhccChHHHHHHHHHHhhCCC--CceEEEECCCCccHHHHHHHHHHh
Confidence 3779999886666544444322 223889999999999999999973
No 323
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=93.25 E-value=0.041 Score=53.10 Aligned_cols=23 Identities=13% Similarity=0.203 Sum_probs=21.1
Q ss_pred cEEEEEEcCCCChHHHHHHHHHc
Q 003890 208 LSVVAILNGSGFDKTAFAADTYN 230 (788)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~ 230 (788)
-.+|+|+|+.|+||||+++.+..
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~ 28 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFE 28 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999999987
No 324
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=93.19 E-value=0.048 Score=51.98 Aligned_cols=23 Identities=30% Similarity=0.304 Sum_probs=21.0
Q ss_pred cEEEEEEcCCCChHHHHHHHHHc
Q 003890 208 LSVVAILNGSGFDKTAFAADTYN 230 (788)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~ 230 (788)
..+|.|.|++|+||||+|+.+..
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999886
No 325
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=93.18 E-value=0.048 Score=54.73 Aligned_cols=24 Identities=13% Similarity=0.212 Sum_probs=22.1
Q ss_pred CcEEEEEEcCCCChHHHHHHHHHc
Q 003890 207 GLSVVAILNGSGFDKTAFAADTYN 230 (788)
Q Consensus 207 ~~~vi~I~G~gGiGKTtLa~~v~~ 230 (788)
...+|+|.|+.|+||||+|+.+..
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999999987
No 326
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=93.17 E-value=0.037 Score=53.47 Aligned_cols=24 Identities=13% Similarity=0.232 Sum_probs=21.6
Q ss_pred CcEEEEEEcCCCChHHHHHHHHHc
Q 003890 207 GLSVVAILNGSGFDKTAFAADTYN 230 (788)
Q Consensus 207 ~~~vi~I~G~gGiGKTtLa~~v~~ 230 (788)
...+|.|+|++|+||||+++.+..
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~ 34 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLS 34 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHH
T ss_pred cCCEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999987
No 327
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=93.15 E-value=0.036 Score=52.05 Aligned_cols=22 Identities=14% Similarity=0.134 Sum_probs=20.2
Q ss_pred EEEEEEcCCCChHHHHHHHHHc
Q 003890 209 SVVAILNGSGFDKTAFAADTYN 230 (788)
Q Consensus 209 ~vi~I~G~gGiGKTtLa~~v~~ 230 (788)
+.|.|.|++|+||||+|+.+..
T Consensus 5 ~~i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 3689999999999999999987
No 328
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=93.15 E-value=0.052 Score=52.30 Aligned_cols=24 Identities=25% Similarity=0.357 Sum_probs=22.1
Q ss_pred CcEEEEEEcCCCChHHHHHHHHHc
Q 003890 207 GLSVVAILNGSGFDKTAFAADTYN 230 (788)
Q Consensus 207 ~~~vi~I~G~gGiGKTtLa~~v~~ 230 (788)
...+|+|.|+.|+||||+|+.+.+
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999999987
No 329
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=93.15 E-value=0.047 Score=51.76 Aligned_cols=23 Identities=22% Similarity=0.076 Sum_probs=21.3
Q ss_pred cEEEEEEcCCCChHHHHHHHHHc
Q 003890 208 LSVVAILNGSGFDKTAFAADTYN 230 (788)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~ 230 (788)
...|.|+|+.|+||||+|+.+..
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~ 32 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAA 32 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999987
No 330
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=93.13 E-value=0.074 Score=54.47 Aligned_cols=38 Identities=16% Similarity=0.257 Sum_probs=27.8
Q ss_pred cHHHHHHHHhcC---CCCcEEEEEEcCCCChHHHHHHHHHc
Q 003890 193 GREELFDLLIEG---PSGLSVVAILNGSGFDKTAFAADTYN 230 (788)
Q Consensus 193 ~~~~i~~~L~~~---~~~~~vi~I~G~gGiGKTtLa~~v~~ 230 (788)
.+++++..++.+ .....+|.|.|++|+||||+|+.+..
T Consensus 15 ~~~~~~~~~l~~~~~~~~~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 15 RLNDNLEELIQGKKAVESPTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp HHHHHHHHHHTTCCCCSSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 344445444443 23467899999999999999999987
No 331
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=93.08 E-value=0.072 Score=52.20 Aligned_cols=36 Identities=19% Similarity=0.251 Sum_probs=27.1
Q ss_pred HHHHHHHHhcCCCCcEEEEEEcCCCChHHHHHHHHHcc
Q 003890 194 REELFDLLIEGPSGLSVVAILNGSGFDKTAFAADTYNN 231 (788)
Q Consensus 194 ~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 231 (788)
.+.+.+.+... ...+|.|+|.+|+|||||+..+...
T Consensus 26 a~~~r~~~~~~--~~~~i~ivG~~gvGKTtl~~~l~~~ 61 (226)
T 2hf9_A 26 ADKNRKLLNKH--GVVAFDFMGAIGSGKTLLIEKLIDN 61 (226)
T ss_dssp HHHHHHHHHHT--TCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHhC--CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 44444444333 4789999999999999999988874
No 332
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=93.07 E-value=0.37 Score=49.94 Aligned_cols=53 Identities=19% Similarity=0.163 Sum_probs=36.5
Q ss_pred CcEEEEEEcCCCChHHHHHHHHHcccCcccccceeEEEEeCCCCChHHHHHHHHHHc
Q 003890 207 GLSVVAILNGSGFDKTAFAADTYNNNHIKFYFDCLAWVRVSIAYDSGKILDDIIKSV 263 (788)
Q Consensus 207 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~~l 263 (788)
.-.++.|.|.+|+||||||..+..+...++ ..++|++.. -+..++...++...
T Consensus 67 ~G~l~li~G~pG~GKTtl~l~ia~~~a~~g--~~vl~~slE--~s~~~l~~R~~~~~ 119 (315)
T 3bh0_A 67 RRNFVLIAARPSMGKTAFALKQAKNMSDND--DVVNLHSLE--MGKKENIKRLIVTA 119 (315)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHTTT--CEEEEEESS--SCHHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHcC--CeEEEEECC--CCHHHHHHHHHHHH
Confidence 356889999999999999988876432222 457776644 45666666666543
No 333
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=93.04 E-value=0.04 Score=53.06 Aligned_cols=23 Identities=17% Similarity=0.234 Sum_probs=20.3
Q ss_pred cEEEEEEcCCCChHHHHHHHHHc
Q 003890 208 LSVVAILNGSGFDKTAFAADTYN 230 (788)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~ 230 (788)
-++++|+|+.|+|||||++.+..
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~ 26 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQ 26 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 35789999999999999999876
No 334
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=93.01 E-value=0.37 Score=52.63 Aligned_cols=24 Identities=17% Similarity=0.153 Sum_probs=21.8
Q ss_pred CcEEEEEEcCCCChHHHHHHHHHc
Q 003890 207 GLSVVAILNGSGFDKTAFAADTYN 230 (788)
Q Consensus 207 ~~~vi~I~G~gGiGKTtLa~~v~~ 230 (788)
.-.+++|+|..|+|||||++.+..
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAg 315 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLAR 315 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCcccHHHHHHHHHH
Confidence 457999999999999999999887
No 335
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=93.01 E-value=0.052 Score=51.48 Aligned_cols=25 Identities=24% Similarity=0.048 Sum_probs=22.2
Q ss_pred CcEEEEEEcCCCChHHHHHHHHHcc
Q 003890 207 GLSVVAILNGSGFDKTAFAADTYNN 231 (788)
Q Consensus 207 ~~~vi~I~G~gGiGKTtLa~~v~~~ 231 (788)
...+|.|+|++|+||||+++.+...
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~ 36 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADL 36 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 3578999999999999999999873
No 336
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=93.00 E-value=0.048 Score=52.10 Aligned_cols=23 Identities=13% Similarity=0.289 Sum_probs=21.3
Q ss_pred cEEEEEEcCCCChHHHHHHHHHc
Q 003890 208 LSVVAILNGSGFDKTAFAADTYN 230 (788)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~ 230 (788)
..+|.|.|+.|+||||+|+.+..
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 56899999999999999999987
No 337
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=93.00 E-value=0.052 Score=51.39 Aligned_cols=23 Identities=22% Similarity=0.112 Sum_probs=20.8
Q ss_pred cEEEEEEcCCCChHHHHHHHHHc
Q 003890 208 LSVVAILNGSGFDKTAFAADTYN 230 (788)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~ 230 (788)
-..|.+.|+.|+||||+|+.+.+
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999986
No 338
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=92.98 E-value=0.054 Score=54.65 Aligned_cols=23 Identities=13% Similarity=0.330 Sum_probs=21.3
Q ss_pred cEEEEEEcCCCChHHHHHHHHHc
Q 003890 208 LSVVAILNGSGFDKTAFAADTYN 230 (788)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~ 230 (788)
..+|.|.|++|+||||+|+.+..
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHH
Confidence 56899999999999999999987
No 339
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=92.97 E-value=0.055 Score=56.15 Aligned_cols=24 Identities=21% Similarity=0.361 Sum_probs=20.9
Q ss_pred CcEEEEEEcCCCChHHHHHHHHHc
Q 003890 207 GLSVVAILNGSGFDKTAFAADTYN 230 (788)
Q Consensus 207 ~~~vi~I~G~gGiGKTtLa~~v~~ 230 (788)
+.+||+|.|-|||||||.|..+..
T Consensus 47 ~aKVIAIaGKGGVGKTTtavNLA~ 70 (314)
T 3fwy_A 47 GAKVFAVYGKGGIGKSTTSSNLSA 70 (314)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CceEEEEECCCccCHHHHHHHHHH
Confidence 589999999999999998766654
No 340
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=92.92 E-value=0.071 Score=53.14 Aligned_cols=24 Identities=13% Similarity=0.012 Sum_probs=22.0
Q ss_pred CcEEEEEEcCCCChHHHHHHHHHc
Q 003890 207 GLSVVAILNGSGFDKTAFAADTYN 230 (788)
Q Consensus 207 ~~~vi~I~G~gGiGKTtLa~~v~~ 230 (788)
...+|.|.|++|+||||+|+.+.+
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 467899999999999999999986
No 341
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=92.91 E-value=0.068 Score=53.65 Aligned_cols=39 Identities=15% Similarity=0.083 Sum_probs=28.9
Q ss_pred hcHHHHHHHHhcC---CCCcEEEEEEcCCCChHHHHHHHHHc
Q 003890 192 RGREELFDLLIEG---PSGLSVVAILNGSGFDKTAFAADTYN 230 (788)
Q Consensus 192 ~~~~~i~~~L~~~---~~~~~vi~I~G~gGiGKTtLa~~v~~ 230 (788)
...+.++..+..+ .....+|.|+|++|+||||+|+.+..
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~i~l~G~~GsGKSTla~~L~~ 54 (253)
T 2p5t_B 13 HALARNLRSLTRGKKSSKQPIAILLGGQSGAGKTTIHRIKQK 54 (253)
T ss_dssp HHHHHHHHHHHTTCCCCSSCEEEEEESCGGGTTHHHHHHHHH
T ss_pred HHHHHHHHHHHccCCcccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3445555555543 23467899999999999999999987
No 342
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=92.91 E-value=0.43 Score=51.70 Aligned_cols=37 Identities=24% Similarity=0.166 Sum_probs=27.5
Q ss_pred HHHHHHHHhcC-------CCCcEEEEEEcCCCChHHHHHHHHHc
Q 003890 194 REELFDLLIEG-------PSGLSVVAILNGSGFDKTAFAADTYN 230 (788)
Q Consensus 194 ~~~i~~~L~~~-------~~~~~vi~I~G~gGiGKTtLa~~v~~ 230 (788)
.+++.+.|... ....++|.++|.+|+||||++..+..
T Consensus 79 ~~~l~~~l~~~~~~~~~~~~~~~vI~ivG~~GvGKTT~a~~LA~ 122 (433)
T 2xxa_A 79 RNELVAAMGEENQTLNLAAQPPAVVLMAGLQGAGKTTSVGKLGK 122 (433)
T ss_dssp HHHHHHHHCSSSCCCCCCSSSSEEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHHHHhccccccccccCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 45566655432 12468999999999999999988776
No 343
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=92.90 E-value=0.037 Score=52.37 Aligned_cols=22 Identities=9% Similarity=0.108 Sum_probs=20.1
Q ss_pred EEEEEEcCCCChHHHHHHHHHc
Q 003890 209 SVVAILNGSGFDKTAFAADTYN 230 (788)
Q Consensus 209 ~vi~I~G~gGiGKTtLa~~v~~ 230 (788)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 3589999999999999999987
No 344
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=92.89 E-value=0.053 Score=50.48 Aligned_cols=24 Identities=13% Similarity=0.076 Sum_probs=21.6
Q ss_pred CcEEEEEEcCCCChHHHHHHHHHc
Q 003890 207 GLSVVAILNGSGFDKTAFAADTYN 230 (788)
Q Consensus 207 ~~~vi~I~G~gGiGKTtLa~~v~~ 230 (788)
..++++|+|..|+|||||+..+..
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~ 26 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVA 26 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 367999999999999999999887
No 345
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=92.81 E-value=0.054 Score=54.07 Aligned_cols=23 Identities=22% Similarity=0.174 Sum_probs=21.3
Q ss_pred cEEEEEEcCCCChHHHHHHHHHc
Q 003890 208 LSVVAILNGSGFDKTAFAADTYN 230 (788)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~ 230 (788)
..+|+|+|+.|+|||||++.+..
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~ 49 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQ 49 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 56999999999999999999994
No 346
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=92.79 E-value=0.35 Score=49.60 Aligned_cols=91 Identities=14% Similarity=-0.032 Sum_probs=46.3
Q ss_pred cEEEEEEcCCCChHHHHHHHHHcccCcccccceeEEEEeCC-CCChHHHHHHHHHHcCCCCCCcccccCCHHHHHHHHHH
Q 003890 208 LSVVAILNGSGFDKTAFAADTYNNNHIKFYFDCLAWVRVSI-AYDSGKILDDIIKSVMPPSRVSVIIGEDYKLKKTILRD 286 (788)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~-~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~ 286 (788)
..+++++|.+|+||||++..+..- ....=..+.++.... .....+.++......+..... .....+..++.....+
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~--~~~~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~-~~~~~~p~~~~~~~l~ 174 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYF--YKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYG-EPGEKDVVGIAKRGVE 174 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHH--HHHTTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEEC-CTTCCCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH--HHHCCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEe-cCCCCCHHHHHHHHHH
Confidence 679999999999999999888763 222111355554432 222233333444443332110 0012344444433333
Q ss_pred HhcCCcE-EEEEeCCC
Q 003890 287 YLTNKKY-FIVLDDVF 301 (788)
Q Consensus 287 ~l~~kr~-LlVLDdvw 301 (788)
.++.++| ++|+|-.-
T Consensus 175 ~~~~~~~D~ViIDTpg 190 (297)
T 1j8m_F 175 KFLSEKMEIIIVDTAG 190 (297)
T ss_dssp HHHHTTCSEEEEECCC
T ss_pred HHHhCCCCEEEEeCCC
Confidence 4432233 77788653
No 347
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=92.77 E-value=0.044 Score=51.15 Aligned_cols=22 Identities=9% Similarity=0.173 Sum_probs=20.3
Q ss_pred EEEEEEcCCCChHHHHHHHHHc
Q 003890 209 SVVAILNGSGFDKTAFAADTYN 230 (788)
Q Consensus 209 ~vi~I~G~gGiGKTtLa~~v~~ 230 (788)
.+|.|.|+.|+||||+|+.+..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999987
No 348
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=92.76 E-value=0.065 Score=55.57 Aligned_cols=24 Identities=8% Similarity=-0.006 Sum_probs=22.1
Q ss_pred CcEEEEEEcCCCChHHHHHHHHHc
Q 003890 207 GLSVVAILNGSGFDKTAFAADTYN 230 (788)
Q Consensus 207 ~~~vi~I~G~gGiGKTtLa~~v~~ 230 (788)
...+|+|+|..|+|||||++.+..
T Consensus 89 ~g~ivgI~G~sGsGKSTL~~~L~g 112 (312)
T 3aez_A 89 VPFIIGVAGSVAVGKSTTARVLQA 112 (312)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCEEEEEECCCCchHHHHHHHHHh
Confidence 467999999999999999999887
No 349
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=92.75 E-value=0.059 Score=51.52 Aligned_cols=24 Identities=17% Similarity=0.122 Sum_probs=22.1
Q ss_pred CcEEEEEEcCCCChHHHHHHHHHc
Q 003890 207 GLSVVAILNGSGFDKTAFAADTYN 230 (788)
Q Consensus 207 ~~~vi~I~G~gGiGKTtLa~~v~~ 230 (788)
.-.+|+|.|+.|+||||+|+.+.+
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~ 34 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKN 34 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHH
Confidence 367999999999999999999987
No 350
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=92.75 E-value=0.065 Score=49.43 Aligned_cols=23 Identities=17% Similarity=0.160 Sum_probs=21.3
Q ss_pred cEEEEEEcCCCChHHHHHHHHHc
Q 003890 208 LSVVAILNGSGFDKTAFAADTYN 230 (788)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~ 230 (788)
-.+++|+|..|.|||||++.+..
T Consensus 33 Ge~v~L~G~nGaGKTTLlr~l~g 55 (158)
T 1htw_A 33 AIMVYLNGDLGAGKTTLTRGMLQ 55 (158)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 56999999999999999999887
No 351
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=92.74 E-value=0.058 Score=52.18 Aligned_cols=24 Identities=17% Similarity=-0.028 Sum_probs=21.5
Q ss_pred cEEEEEEcCCCChHHHHHHHHHcc
Q 003890 208 LSVVAILNGSGFDKTAFAADTYNN 231 (788)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~~ 231 (788)
..+|.|.|+.|+||||+|+.+...
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~~ 27 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKDW 27 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHH
Confidence 368999999999999999999873
No 352
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=92.71 E-value=0.055 Score=52.41 Aligned_cols=23 Identities=17% Similarity=0.063 Sum_probs=21.2
Q ss_pred cEEEEEEcCCCChHHHHHHHHHc
Q 003890 208 LSVVAILNGSGFDKTAFAADTYN 230 (788)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~ 230 (788)
-.+++|+|..|+|||||++.+..
T Consensus 20 Gei~~l~GpnGsGKSTLl~~l~g 42 (207)
T 1znw_A 20 GRVVVLSGPSAVGKSTVVRCLRE 42 (207)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 45899999999999999999987
No 353
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=92.69 E-value=0.05 Score=52.06 Aligned_cols=23 Identities=17% Similarity=0.294 Sum_probs=21.2
Q ss_pred cEEEEEEcCCCChHHHHHHHHHc
Q 003890 208 LSVVAILNGSGFDKTAFAADTYN 230 (788)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~ 230 (788)
..+|+|.|++|+||||+|+.+..
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999987
No 354
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=92.67 E-value=0.058 Score=50.04 Aligned_cols=21 Identities=5% Similarity=-0.097 Sum_probs=19.7
Q ss_pred EEEEEcCCCChHHHHHHHHHc
Q 003890 210 VVAILNGSGFDKTAFAADTYN 230 (788)
Q Consensus 210 vi~I~G~gGiGKTtLa~~v~~ 230 (788)
.|.|.|+.|+||||+|+.+.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999987
No 355
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=92.65 E-value=0.073 Score=51.94 Aligned_cols=41 Identities=29% Similarity=0.268 Sum_probs=30.0
Q ss_pred cchhcHHHHHHHHhcCCCCcEEEEEEcCCCChHHHHHHHHHcc
Q 003890 189 EFERGREELFDLLIEGPSGLSVVAILNGSGFDKTAFAADTYNN 231 (788)
Q Consensus 189 Gr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 231 (788)
+.++..+.+.+.+... ...+|+|+|.+|+|||||+..+...
T Consensus 13 ~~~~~~~~~~~~~~~~--~~~~i~i~G~~g~GKTTl~~~l~~~ 53 (221)
T 2wsm_A 13 ENKRLAEKNREALRES--GTVAVNIMGAIGSGKTLLIERTIER 53 (221)
T ss_dssp HHHHHHHHHHHHHHHH--TCEEEEEEECTTSCHHHHHHHHHHH
T ss_pred hcHHHHHHHHHhhccc--CceEEEEEcCCCCCHHHHHHHHHHH
Confidence 3344455555555433 4789999999999999999988874
No 356
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=92.61 E-value=0.13 Score=54.80 Aligned_cols=111 Identities=16% Similarity=0.191 Sum_probs=60.6
Q ss_pred cEEEEEEcCCCChHHHHHHHHHcccCcccccce-eEEEEeCCCCChHHHHHHHHHHcCCCCCC-cc-cccCCHHHHHHHH
Q 003890 208 LSVVAILNGSGFDKTAFAADTYNNNHIKFYFDC-LAWVRVSIAYDSGKILDDIIKSVMPPSRV-SV-IIGEDYKLKKTIL 284 (788)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~-~~wv~vs~~~~~~~~~~~il~~l~~~~~~-~~-~~~~~~~~~~~~l 284 (788)
-.+++|+|..|+|||||++.+..- +...... ++++...-.+. +...... .+ .-..+...+...+
T Consensus 136 g~~i~ivG~~GsGKTTll~~l~~~--~~~~~~g~I~~~e~~~e~~-----------~~~~~~~v~Q~~~g~~~~~~~~~l 202 (372)
T 2ewv_A 136 MGLILVTGPTGSGKSTTIASMIDY--INQTKSYHIITIEDPIEYV-----------FKHKKSIVNQREVGEDTKSFADAL 202 (372)
T ss_dssp SEEEEEECSSSSSHHHHHHHHHHH--HHHHSCCEEEEEESSCCSC-----------CCCSSSEEEEEEBTTTBSCSHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh--cCcCCCcEEEEecccHhhh-----------hccCceEEEeeecCCCHHHHHHHH
Confidence 568999999999999999998762 2221122 33333111110 0000000 00 0000112234567
Q ss_pred HHHhcCCcEEEEEeCCCCChhhHHHHhhhcCCCCCCcEEEEecCChHHHhh
Q 003890 285 RDYLTNKKYFIVLDDVFNDSDIWDDLEQVLPDNQNGSRVLITVTDLDLLES 335 (788)
Q Consensus 285 ~~~l~~kr~LlVLDdvw~~~~~~~~l~~~l~~~~~gskIivTTR~~~v~~~ 335 (788)
+..+...+=+|++|.+. +.+.+....... ..|.-|+.|+-..++...
T Consensus 203 ~~~L~~~pd~illdE~~-d~e~~~~~l~~~---~~g~~vi~t~H~~~~~~~ 249 (372)
T 2ewv_A 203 RAALREDPDVIFVGEMR-DLETVETALRAA---ETGHLVFGTLHTNTAIDT 249 (372)
T ss_dssp HHHTTSCCSEEEESCCC-SHHHHHHHHHHH---TTTCEEEECCCCCSHHHH
T ss_pred HHHhhhCcCEEEECCCC-CHHHHHHHHHHH---hcCCEEEEEECcchHHHH
Confidence 77777777789999997 665544433332 235668888887665443
No 357
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=92.61 E-value=0.058 Score=51.27 Aligned_cols=23 Identities=30% Similarity=0.368 Sum_probs=21.2
Q ss_pred cEEEEEEcCCCChHHHHHHHHHc
Q 003890 208 LSVVAILNGSGFDKTAFAADTYN 230 (788)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~ 230 (788)
..+|+|.|+.|+||||+|+.+..
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999987
No 358
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=92.56 E-value=0.35 Score=47.76 Aligned_cols=39 Identities=23% Similarity=0.121 Sum_probs=26.7
Q ss_pred cEEEEEEcCCCChHHHHHHHHHcccCcccccceeEEEEeCC
Q 003890 208 LSVVAILNGSGFDKTAFAADTYNNNHIKFYFDCLAWVRVSI 248 (788)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~ 248 (788)
-.++.|.|.+|+||||||.++... ....=..++|++...
T Consensus 23 G~~~~i~G~~GsGKTtl~~~~~~~--~~~~~~~v~~~~~e~ 61 (247)
T 2dr3_A 23 RNVVLLSGGPGTGKTIFSQQFLWN--GLKMGEPGIYVALEE 61 (247)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHH--HHHTTCCEEEEESSS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH--HHhcCCeEEEEEccC
Confidence 458999999999999998877653 111112467776543
No 359
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=92.53 E-value=0.11 Score=55.07 Aligned_cols=37 Identities=16% Similarity=0.111 Sum_probs=28.9
Q ss_pred HHHHHHHHhcCCCCcEEEEEEcCCCChHHHHHHHHHc
Q 003890 194 REELFDLLIEGPSGLSVVAILNGSGFDKTAFAADTYN 230 (788)
Q Consensus 194 ~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 230 (788)
..++.+.+........+|+|+|.+|+|||||+..+..
T Consensus 65 ~~~~~~~~~~~~~~~~~I~i~G~~G~GKSTl~~~L~~ 101 (355)
T 3p32_A 65 AQQLLLRLLPDSGNAHRVGITGVPGVGKSTAIEALGM 101 (355)
T ss_dssp HHHHHHHHGGGCCCSEEEEEECCTTSSHHHHHHHHHH
T ss_pred HHHHHHHhHhhcCCceEEEEECCCCCCHHHHHHHHHH
Confidence 4455666654445688999999999999999988865
No 360
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=92.52 E-value=0.046 Score=51.60 Aligned_cols=23 Identities=22% Similarity=0.095 Sum_probs=17.1
Q ss_pred cEEEEEEcCCCChHHHHHHHHHc
Q 003890 208 LSVVAILNGSGFDKTAFAADTYN 230 (788)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~ 230 (788)
..+|.|.|+.|+||||+|+.+..
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~ 27 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHE 27 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999987
No 361
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=92.51 E-value=0.31 Score=52.58 Aligned_cols=23 Identities=22% Similarity=0.049 Sum_probs=21.1
Q ss_pred cEEEEEEcCCCChHHHHHHHHHc
Q 003890 208 LSVVAILNGSGFDKTAFAADTYN 230 (788)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~ 230 (788)
..+|+++|.+|+||||++..+..
T Consensus 98 ~~vi~i~G~~GsGKTT~~~~LA~ 120 (425)
T 2ffh_A 98 RNLWFLVGLQGSGKTTTAAKLAL 120 (425)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 67999999999999999988886
No 362
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=92.50 E-value=0.061 Score=51.21 Aligned_cols=21 Identities=29% Similarity=0.309 Sum_probs=19.9
Q ss_pred EEEEEcCCCChHHHHHHHHHc
Q 003890 210 VVAILNGSGFDKTAFAADTYN 230 (788)
Q Consensus 210 vi~I~G~gGiGKTtLa~~v~~ 230 (788)
+|+|.|+.|+||||+|+.+.+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999987
No 363
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=92.49 E-value=0.075 Score=53.02 Aligned_cols=24 Identities=8% Similarity=0.184 Sum_probs=21.7
Q ss_pred CcEEEEEEcCCCChHHHHHHHHHc
Q 003890 207 GLSVVAILNGSGFDKTAFAADTYN 230 (788)
Q Consensus 207 ~~~vi~I~G~gGiGKTtLa~~v~~ 230 (788)
...+|+|.|..|+|||||++.+..
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 357999999999999999999876
No 364
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=92.49 E-value=0.062 Score=51.68 Aligned_cols=23 Identities=22% Similarity=0.115 Sum_probs=21.0
Q ss_pred cEEEEEEcCCCChHHHHHHHHHc
Q 003890 208 LSVVAILNGSGFDKTAFAADTYN 230 (788)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~ 230 (788)
..+|.|.|++|+||||+|+.+..
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999999987
No 365
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=92.48 E-value=0.062 Score=51.44 Aligned_cols=24 Identities=13% Similarity=0.347 Sum_probs=21.7
Q ss_pred CcEEEEEEcCCCChHHHHHHHHHc
Q 003890 207 GLSVVAILNGSGFDKTAFAADTYN 230 (788)
Q Consensus 207 ~~~vi~I~G~gGiGKTtLa~~v~~ 230 (788)
.-++|+|+|+.|+|||||++.+..
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~ 41 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLS 41 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCEEEEECcCCCCHHHHHHHHHh
Confidence 357899999999999999999986
No 366
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=92.48 E-value=0.063 Score=53.82 Aligned_cols=23 Identities=17% Similarity=0.186 Sum_probs=21.4
Q ss_pred cEEEEEEcCCCChHHHHHHHHHc
Q 003890 208 LSVVAILNGSGFDKTAFAADTYN 230 (788)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~ 230 (788)
-.+|+|+|+.|+||||+++.+..
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La~ 49 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALAE 49 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46999999999999999999996
No 367
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=92.39 E-value=2 Score=46.72 Aligned_cols=54 Identities=19% Similarity=0.078 Sum_probs=35.9
Q ss_pred CcEEEEEEcCCCChHHHHHHHHHcccCcccccceeEEEEeCCCCChHHHHHHHHHHc
Q 003890 207 GLSVVAILNGSGFDKTAFAADTYNNNHIKFYFDCLAWVRVSIAYDSGKILDDIIKSV 263 (788)
Q Consensus 207 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~~l 263 (788)
.-.++.|.|.+|+||||||..++.+...... ..++|++.. -+...+...++...
T Consensus 199 ~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g-~~vl~~slE--~~~~~l~~R~~~~~ 252 (444)
T 2q6t_A 199 PGSLNIIAARPAMGKTAFALTIAQNAALKEG-VGVGIYSLE--MPAAQLTLRMMCSE 252 (444)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHHHHHTTC-CCEEEEESS--SCHHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHhCC-CeEEEEECC--CCHHHHHHHHHHHH
Confidence 3568899999999999999888774222111 236676543 45566776666543
No 368
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=92.34 E-value=0.055 Score=52.97 Aligned_cols=23 Identities=22% Similarity=0.260 Sum_probs=21.0
Q ss_pred cEEEEEEcCCCChHHHHHHHHHc
Q 003890 208 LSVVAILNGSGFDKTAFAADTYN 230 (788)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~ 230 (788)
-.+++|+|+.|+|||||++.+..
T Consensus 23 G~~~~lvGpsGsGKSTLl~~L~g 45 (218)
T 1z6g_A 23 IYPLVICGPSGVGKGTLIKKLLN 45 (218)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 45899999999999999999987
No 369
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=92.30 E-value=0.067 Score=57.58 Aligned_cols=105 Identities=13% Similarity=0.198 Sum_probs=57.1
Q ss_pred HHHHHHhcCCCCcEEEEEEcCCCChHHHHHHHHHcccCcccc-cc-eeEEEEeCCCCC-hHHHHHHHHHHcCCCCCCc--
Q 003890 196 ELFDLLIEGPSGLSVVAILNGSGFDKTAFAADTYNNNHIKFY-FD-CLAWVRVSIAYD-SGKILDDIIKSVMPPSRVS-- 270 (788)
Q Consensus 196 ~i~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-F~-~~~wv~vs~~~~-~~~~~~~il~~l~~~~~~~-- 270 (788)
+.++.|..=. .-..++|.|..|+|||+|+.++.+.....+. =+ .++++-+++... +.++.+++...=......-
T Consensus 140 raID~l~pig-rGQr~~Ifgg~G~GKt~L~~~Ia~~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~~~~~g~~~rtvvV~ 218 (465)
T 3vr4_D 140 SAIDHLNTLV-RGQKLPVFSGSGLPHKELAAQIARQATVLDSSDDFAVVFAAIGITFEEAEFFMEDFRQTGAIDRSVMFM 218 (465)
T ss_dssp HHHHTTSCCB-TTCBCCEEECTTSCHHHHHHHHHHHCBCSSCSSCEEEEEEEEEECHHHHHHHHHHHHHHTGGGGEEEEE
T ss_pred eEEecccccc-cCCEEEEeCCCCcChHHHHHHHHHHHHhccCCCceEEEEEEecCCcHHHHHHHHHHhhcCCccceEEEE
Confidence 3445554321 1234689999999999999999985433111 11 477777777654 5566666544310000000
Q ss_pred ccccCCH------HHHHHHHHHHh---cCCcEEEEEeCCC
Q 003890 271 VIIGEDY------KLKKTILRDYL---TNKKYFIVLDDVF 301 (788)
Q Consensus 271 ~~~~~~~------~~~~~~l~~~l---~~kr~LlVLDdvw 301 (788)
...+... -...-.+.+++ +|+.+|+++||+-
T Consensus 219 atsd~p~~~r~~a~~~a~tiAEyfrd~~G~~VLl~~DslT 258 (465)
T 3vr4_D 219 NLANDPAIERIATPRMALTAAEYLAYEKGMHVLVIMTDMT 258 (465)
T ss_dssp EETTSCHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEECHH
T ss_pred ECCCCCHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEcChH
Confidence 0001111 11122345555 3799999999994
No 370
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=92.25 E-value=0.082 Score=51.52 Aligned_cols=26 Identities=19% Similarity=0.280 Sum_probs=23.2
Q ss_pred CCcEEEEEEcCCCChHHHHHHHHHcc
Q 003890 206 SGLSVVAILNGSGFDKTAFAADTYNN 231 (788)
Q Consensus 206 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 231 (788)
...+||.|.|++|+||||.|+.+.+.
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~ 52 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQK 52 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 35789999999999999999999873
No 371
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=92.15 E-value=0.18 Score=49.41 Aligned_cols=44 Identities=11% Similarity=0.180 Sum_probs=30.0
Q ss_pred cEEEEEEcCCCChHHHHHHHHHcccCcc---c-ccceeEEEEeCCCCC
Q 003890 208 LSVVAILNGSGFDKTAFAADTYNNNHIK---F-YFDCLAWVRVSIAYD 251 (788)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~---~-~F~~~~wv~vs~~~~ 251 (788)
-.+++|+|..|+|||||++.+....... . .-...+|+.-...+.
T Consensus 25 G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~ 72 (231)
T 4a74_A 25 QAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFR 72 (231)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCC
Confidence 5799999999999999999997621111 1 123477776544433
No 372
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=92.14 E-value=0.19 Score=52.88 Aligned_cols=54 Identities=13% Similarity=-0.108 Sum_probs=35.1
Q ss_pred HHHHHHHhcCCCCcEEEEEEcCCCChHHHHHHHHHcccCcc-cccceeEEEEeCCCC
Q 003890 195 EELFDLLIEGPSGLSVVAILNGSGFDKTAFAADTYNNNHIK-FYFDCLAWVRVSIAY 250 (788)
Q Consensus 195 ~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-~~F~~~~wv~vs~~~ 250 (788)
-++++.|..-. .-..++|+|.+|+|||+|++.+.+..... ..+. ++++-+++..
T Consensus 163 iraID~l~Pig-rGQR~lIfg~~g~GKT~Ll~~Ia~~i~~~~~dv~-~V~~lIGER~ 217 (427)
T 3l0o_A 163 TRLIDLFAPIG-KGQRGMIVAPPKAGKTTILKEIANGIAENHPDTI-RIILLIDERP 217 (427)
T ss_dssp HHHHHHHSCCB-TTCEEEEEECTTCCHHHHHHHHHHHHHHHCTTSE-EEEEECSCCH
T ss_pred chhhhhccccc-CCceEEEecCCCCChhHHHHHHHHHHhhcCCCeE-EEEEEeccCc
Confidence 46777776532 23578999999999999999888731111 1222 3566666653
No 373
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=92.13 E-value=0.13 Score=49.06 Aligned_cols=88 Identities=15% Similarity=0.183 Sum_probs=60.4
Q ss_pred hhhhhcCCccccEEEecCC-CCC-----CCCccccCCCCccEEEecCCCCc-----ccChhhcCCCCCcEEEccCCCCcc
Q 003890 540 CENFCEKFKHLRILNLGSA-VLV-----QFPPGLENLFHLKYLKLNIPSLK-----CLPSLLCTLLNLQTLEMPSSYVDQ 608 (788)
Q Consensus 540 ~~~~~~~l~~L~~L~L~~~-~l~-----~lp~~i~~L~~L~~L~L~~~~i~-----~lp~~i~~L~~L~~L~L~~~~l~~ 608 (788)
+...+..-+.|+.|+|+++ .|. .+-..+..-..|+.|+|++|.|. .+-+.+..-+.|++|+|++|.+..
T Consensus 33 l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~ 112 (197)
T 1pgv_A 33 INRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTP 112 (197)
T ss_dssp HHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCH
T ss_pred HHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCH
Confidence 3466677788999999986 665 24455666778999999999876 234455566789999999886653
Q ss_pred -----cchhhhcccccceeeccCc
Q 003890 609 -----SPEDIWMMQKLMHLNFGSI 627 (788)
Q Consensus 609 -----lp~~l~~L~~L~~L~l~~~ 627 (788)
+.+.+..-+.|++|+++++
T Consensus 113 ~Ga~ala~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 113 ELLARLLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp HHHHHHHHHTTTTCCCSEEECCCC
T ss_pred HHHHHHHHHHhhCCceeEEECCCC
Confidence 2333444456777777543
No 374
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=92.06 E-value=0.052 Score=50.79 Aligned_cols=23 Identities=17% Similarity=0.184 Sum_probs=20.5
Q ss_pred cEEEEEEcCCCChHHHHHHHHHc
Q 003890 208 LSVVAILNGSGFDKTAFAADTYN 230 (788)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~ 230 (788)
.++++|+|..|+|||||++.+..
T Consensus 2 ~~~v~IvG~SGsGKSTL~~~L~~ 24 (171)
T 2f1r_A 2 SLILSIVGTSDSGKTTLITRMMP 24 (171)
T ss_dssp -CEEEEEESCHHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999999886
No 375
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=92.02 E-value=0.11 Score=56.15 Aligned_cols=46 Identities=13% Similarity=0.073 Sum_probs=35.9
Q ss_pred CCcccchhcHHHHHHHHhcC------------CCCcEEEEEEcCCCChHHHHHHHHHc
Q 003890 185 LDISEFERGREELFDLLIEG------------PSGLSVVAILNGSGFDKTAFAADTYN 230 (788)
Q Consensus 185 ~~~vGr~~~~~~i~~~L~~~------------~~~~~vi~I~G~gGiGKTtLa~~v~~ 230 (788)
..++|.+..++.+...+... +...+-|.++|++|+||||+|+.+..
T Consensus 15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~ 72 (444)
T 1g41_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAK 72 (444)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHH
Confidence 56899998888887776321 11245688999999999999999998
No 376
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=92.01 E-value=0.085 Score=49.63 Aligned_cols=23 Identities=22% Similarity=0.046 Sum_probs=21.1
Q ss_pred cEEEEEEcCCCChHHHHHHHHHc
Q 003890 208 LSVVAILNGSGFDKTAFAADTYN 230 (788)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~ 230 (788)
-.+|+|.|+.|+||||+++.+..
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999987
No 377
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=91.93 E-value=0.078 Score=50.58 Aligned_cols=21 Identities=10% Similarity=-0.042 Sum_probs=19.8
Q ss_pred EEEEEcCCCChHHHHHHHHHc
Q 003890 210 VVAILNGSGFDKTAFAADTYN 230 (788)
Q Consensus 210 vi~I~G~gGiGKTtLa~~v~~ 230 (788)
.|+|.|+.|+||||+|+.+.+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQ 22 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999987
No 378
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=91.88 E-value=0.08 Score=51.36 Aligned_cols=23 Identities=4% Similarity=-0.022 Sum_probs=21.3
Q ss_pred cEEEEEEcCCCChHHHHHHHHHc
Q 003890 208 LSVVAILNGSGFDKTAFAADTYN 230 (788)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~ 230 (788)
..+|+|.|+.|+||||+|+.+.+
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999987
No 379
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=91.88 E-value=0.33 Score=50.64 Aligned_cols=109 Identities=15% Similarity=0.084 Sum_probs=58.9
Q ss_pred EEEEEEcCCCChHHHHHHHHHcccCcccccceeEEEEeCCCCChHHHHHHHHHHcCCCCCCcccccCCHHHHHHHHHHHh
Q 003890 209 SVVAILNGSGFDKTAFAADTYNNNHIKFYFDCLAWVRVSIAYDSGKILDDIIKSVMPPSRVSVIIGEDYKLKKTILRDYL 288 (788)
Q Consensus 209 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~~l 288 (788)
.+++|+|..|.|||||++.+..- +.. -...+.+.-...+.... .... ..............+...|
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~g~--~~~-~~g~i~i~~~~e~~~~~----------~~~~-i~~~~ggg~~~r~~la~aL 237 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIMEF--IPK-EERIISIEDTEEIVFKH----------HKNY-TQLFFGGNITSADCLKSCL 237 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGGGG--SCT-TSCEEEEESSCCCCCSS----------CSSE-EEEECBTTBCHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC--CcC-CCcEEEECCeecccccc----------chhE-EEEEeCCChhHHHHHHHHh
Confidence 48999999999999999999873 221 23345543222111000 0000 0000001122344566777
Q ss_pred cCCcEEEEEeCCCCChhhHHHHhhhcCCCCCCcEEEEecCChHHHhh
Q 003890 289 TNKKYFIVLDDVFNDSDIWDDLEQVLPDNQNGSRVLITVTDLDLLES 335 (788)
Q Consensus 289 ~~kr~LlVLDdvw~~~~~~~~l~~~l~~~~~gskIivTTR~~~v~~~ 335 (788)
..++=++++|.+. +.+.++.+.. +..+ +.-+|+||...++...
T Consensus 238 ~~~p~ilildE~~-~~e~~~~l~~-~~~g--~~tvi~t~H~~~~~~~ 280 (330)
T 2pt7_A 238 RMRPDRIILGELR-SSEAYDFYNV-LCSG--HKGTLTTLHAGSSEEA 280 (330)
T ss_dssp TSCCSEEEECCCC-STHHHHHHHH-HHTT--CCCEEEEEECSSHHHH
T ss_pred hhCCCEEEEcCCC-hHHHHHHHHH-HhcC--CCEEEEEEcccHHHHH
Confidence 7778889999997 6665654443 3222 2226667666554443
No 380
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=91.86 E-value=0.097 Score=51.03 Aligned_cols=23 Identities=26% Similarity=0.297 Sum_probs=20.9
Q ss_pred cEEEEEEcCCCChHHHHHHHHHc
Q 003890 208 LSVVAILNGSGFDKTAFAADTYN 230 (788)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~ 230 (788)
..+|+|.|+.|+||||+++.+..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999975
No 381
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=91.85 E-value=0.072 Score=51.58 Aligned_cols=23 Identities=4% Similarity=-0.172 Sum_probs=21.3
Q ss_pred cEEEEEEcCCCChHHHHHHHHHc
Q 003890 208 LSVVAILNGSGFDKTAFAADTYN 230 (788)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~ 230 (788)
..+|+|.|+.|+||||+|+.+..
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 46899999999999999999987
No 382
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=91.83 E-value=0.083 Score=51.66 Aligned_cols=24 Identities=13% Similarity=0.130 Sum_probs=21.7
Q ss_pred cEEEEEEcCCCChHHHHHHHHHcc
Q 003890 208 LSVVAILNGSGFDKTAFAADTYNN 231 (788)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~~ 231 (788)
-.+++|+|+.|+|||||.+.+...
T Consensus 16 G~ii~l~GpsGsGKSTLlk~L~g~ 39 (219)
T 1s96_A 16 GTLYIVSAPSGAGKSSLIQALLKT 39 (219)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHhcc
Confidence 569999999999999999999873
No 383
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=91.83 E-value=0.091 Score=53.62 Aligned_cols=24 Identities=33% Similarity=0.364 Sum_probs=21.8
Q ss_pred CcEEEEEEcCCCChHHHHHHHHHc
Q 003890 207 GLSVVAILNGSGFDKTAFAADTYN 230 (788)
Q Consensus 207 ~~~vi~I~G~gGiGKTtLa~~v~~ 230 (788)
...+|+|.|+.|+||||+|+.+..
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999999974
No 384
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=91.81 E-value=0.075 Score=52.26 Aligned_cols=23 Identities=17% Similarity=0.216 Sum_probs=21.2
Q ss_pred cEEEEEEcCCCChHHHHHHHHHc
Q 003890 208 LSVVAILNGSGFDKTAFAADTYN 230 (788)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~ 230 (788)
...|.|.|++|+||||+|+.+..
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999987
No 385
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=91.80 E-value=0.085 Score=51.55 Aligned_cols=23 Identities=13% Similarity=0.117 Sum_probs=21.0
Q ss_pred cEEEEEEcCCCChHHHHHHHHHc
Q 003890 208 LSVVAILNGSGFDKTAFAADTYN 230 (788)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~ 230 (788)
...|.|.|++|+||||+|+.+..
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 45789999999999999999987
No 386
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=91.77 E-value=0.17 Score=52.57 Aligned_cols=24 Identities=25% Similarity=0.275 Sum_probs=21.7
Q ss_pred CcEEEEEEcCCCChHHHHHHHHHc
Q 003890 207 GLSVVAILNGSGFDKTAFAADTYN 230 (788)
Q Consensus 207 ~~~vi~I~G~gGiGKTtLa~~v~~ 230 (788)
...+|+|+|.+|+||||++..+..
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~ 127 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMAN 127 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999988876
No 387
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=91.77 E-value=0.077 Score=50.57 Aligned_cols=22 Identities=18% Similarity=0.172 Sum_probs=19.8
Q ss_pred EEEEEcCCCChHHHHHHHHHcc
Q 003890 210 VVAILNGSGFDKTAFAADTYNN 231 (788)
Q Consensus 210 vi~I~G~gGiGKTtLa~~v~~~ 231 (788)
+++|+|..|+|||||++.+...
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~ 24 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhh
Confidence 6899999999999999988763
No 388
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=91.75 E-value=0.043 Score=53.27 Aligned_cols=21 Identities=19% Similarity=0.222 Sum_probs=19.8
Q ss_pred EEEEEcCCCChHHHHHHHHHc
Q 003890 210 VVAILNGSGFDKTAFAADTYN 230 (788)
Q Consensus 210 vi~I~G~gGiGKTtLa~~v~~ 230 (788)
+|+|.|..|+||||+|+.+..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~ 22 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSG 22 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 789999999999999999987
No 389
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=91.73 E-value=0.084 Score=51.35 Aligned_cols=21 Identities=14% Similarity=0.167 Sum_probs=19.3
Q ss_pred EEEEEcCCCChHHHHHHHHHc
Q 003890 210 VVAILNGSGFDKTAFAADTYN 230 (788)
Q Consensus 210 vi~I~G~gGiGKTtLa~~v~~ 230 (788)
.|+|.|++|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999976
No 390
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=91.71 E-value=0.083 Score=50.76 Aligned_cols=23 Identities=9% Similarity=-0.021 Sum_probs=21.2
Q ss_pred cEEEEEEcCCCChHHHHHHHHHc
Q 003890 208 LSVVAILNGSGFDKTAFAADTYN 230 (788)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~ 230 (788)
..+|+|.|+.|+||||+++.+.+
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~ 26 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIME 26 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHH
Confidence 35899999999999999999988
No 391
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=91.63 E-value=0.094 Score=50.88 Aligned_cols=23 Identities=13% Similarity=0.005 Sum_probs=21.3
Q ss_pred cEEEEEEcCCCChHHHHHHHHHc
Q 003890 208 LSVVAILNGSGFDKTAFAADTYN 230 (788)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~ 230 (788)
..+|.|.|+.|+||||+|+.+..
T Consensus 25 ~~~i~~~G~~GsGKsT~~~~l~~ 47 (211)
T 1m7g_A 25 GLTIWLTGLSASGKSTLAVELEH 47 (211)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 57899999999999999999987
No 392
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=91.60 E-value=0.14 Score=50.68 Aligned_cols=23 Identities=22% Similarity=0.108 Sum_probs=21.2
Q ss_pred cEEEEEEcCCCChHHHHHHHHHc
Q 003890 208 LSVVAILNGSGFDKTAFAADTYN 230 (788)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~ 230 (788)
-.+++|+|..|+|||||.+.+..
T Consensus 31 Ge~~~iiG~nGsGKSTLl~~l~G 53 (235)
T 3tif_A 31 GEFVSIMGPSGSGKSTMLNIIGC 53 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCcHHHHHHHHhc
Confidence 45899999999999999999986
No 393
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=91.54 E-value=0.1 Score=53.81 Aligned_cols=24 Identities=25% Similarity=0.152 Sum_probs=21.5
Q ss_pred CcEEEEEEcCCCChHHHHHHHHHc
Q 003890 207 GLSVVAILNGSGFDKTAFAADTYN 230 (788)
Q Consensus 207 ~~~vi~I~G~gGiGKTtLa~~v~~ 230 (788)
...+++|+|.+|+|||||++.+..
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lag 124 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGR 124 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHH
Confidence 357999999999999999999875
No 394
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=91.53 E-value=0.072 Score=53.22 Aligned_cols=23 Identities=13% Similarity=-0.026 Sum_probs=21.0
Q ss_pred cEEEEEEcCCCChHHHHHHHHHc
Q 003890 208 LSVVAILNGSGFDKTAFAADTYN 230 (788)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~ 230 (788)
-.+|+|+|+.|+||||+++.+..
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999987
No 395
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=91.52 E-value=0.097 Score=51.98 Aligned_cols=22 Identities=18% Similarity=0.232 Sum_probs=21.0
Q ss_pred EEEEEEcCCCChHHHHHHHHHc
Q 003890 209 SVVAILNGSGFDKTAFAADTYN 230 (788)
Q Consensus 209 ~vi~I~G~gGiGKTtLa~~v~~ 230 (788)
.+++|+|..|+|||||.+.+..
T Consensus 25 e~~~liG~nGsGKSTLl~~l~G 46 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAG 46 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHhC
Confidence 7999999999999999999987
No 396
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=91.50 E-value=0.095 Score=52.13 Aligned_cols=23 Identities=35% Similarity=0.414 Sum_probs=20.7
Q ss_pred cEEEEEEcCCCChHHHHHHHHHc
Q 003890 208 LSVVAILNGSGFDKTAFAADTYN 230 (788)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~ 230 (788)
-.+++|+|..|+|||||++.+..
T Consensus 30 G~~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 30 GTTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHH
Confidence 46999999999999999998873
No 397
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=91.49 E-value=0.092 Score=51.08 Aligned_cols=21 Identities=10% Similarity=0.091 Sum_probs=19.3
Q ss_pred EEEEEcCCCChHHHHHHHHHc
Q 003890 210 VVAILNGSGFDKTAFAADTYN 230 (788)
Q Consensus 210 vi~I~G~gGiGKTtLa~~v~~ 230 (788)
.|+|.|++|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999976
No 398
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=91.45 E-value=0.065 Score=52.90 Aligned_cols=23 Identities=22% Similarity=0.237 Sum_probs=16.5
Q ss_pred cEEEEEEcCCCChHHHHHHHHH-c
Q 003890 208 LSVVAILNGSGFDKTAFAADTY-N 230 (788)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~-~ 230 (788)
-.+++|+|+.|+|||||++.+. .
T Consensus 27 G~ii~l~Gp~GsGKSTl~~~L~~~ 50 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTVANKLLEK 50 (231)
T ss_dssp CCEEEEECSCC----CHHHHHHC-
T ss_pred CCEEEEECCCCCCHHHHHHHHHhc
Confidence 3589999999999999999998 5
No 399
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=91.37 E-value=0.18 Score=54.89 Aligned_cols=101 Identities=15% Similarity=0.128 Sum_probs=56.5
Q ss_pred HHHHHHhcCCCCcEEEEEEcCCCChHHHHH-HHHHcccCcccccce-eEEEEeCCCCC-hHHHHHHHHHHcCCCCCCc--
Q 003890 196 ELFDLLIEGPSGLSVVAILNGSGFDKTAFA-ADTYNNNHIKFYFDC-LAWVRVSIAYD-SGKILDDIIKSVMPPSRVS-- 270 (788)
Q Consensus 196 ~i~~~L~~~~~~~~vi~I~G~gGiGKTtLa-~~v~~~~~~~~~F~~-~~wv~vs~~~~-~~~~~~~il~~l~~~~~~~-- 270 (788)
++++.|..=. .-..++|+|..|+|||+|| ..+.+. . .-+. ++++-+++... +.++.+++...=......-
T Consensus 164 raID~l~Pig-rGQR~~I~g~~g~GKT~Lal~~I~~~--~--~~dv~~V~~~IGeR~~Ev~e~~~~~~~~g~m~rtvvV~ 238 (515)
T 2r9v_A 164 KAIDSMIPIG-RGQRELIIGDRQTGKTAIAIDTIINQ--K--GQGVYCIYVAIGQKKSAIARIIDKLRQYGAMEYTTVVV 238 (515)
T ss_dssp HHHHHHSCEE-TTCBEEEEEETTSSHHHHHHHHHHTT--T--TTTEEEEEEEESCCHHHHHHHHHHHHHTTGGGGEEEEE
T ss_pred cccccccccc-cCCEEEEEcCCCCCccHHHHHHHHHh--h--cCCcEEEEEEcCCCcHHHHHHHHHHHhCCCcceeEEEE
Confidence 4566664321 1346889999999999995 577773 2 2443 57778887754 5566666654211100000
Q ss_pred ccccCC-HH-----HHHHHHHHHh--cCCcEEEEEeCCC
Q 003890 271 VIIGED-YK-----LKKTILRDYL--TNKKYFIVLDDVF 301 (788)
Q Consensus 271 ~~~~~~-~~-----~~~~~l~~~l--~~kr~LlVLDdvw 301 (788)
...+.. .. .....+.+++ +|+.+|+++||+-
T Consensus 239 atad~p~~~r~~a~~~a~tiAEyfrd~G~dVLli~DslT 277 (515)
T 2r9v_A 239 ASASDPASLQYIAPYAGCAMGEYFAYSGRDALVVYDDLS 277 (515)
T ss_dssp ECTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEETHH
T ss_pred ECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEeccHH
Confidence 000111 11 1122344444 5799999999984
No 400
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=91.36 E-value=0.65 Score=51.24 Aligned_cols=24 Identities=17% Similarity=0.116 Sum_probs=20.3
Q ss_pred CcEEEEEEcCCCChHHHHHHHHHc
Q 003890 207 GLSVVAILNGSGFDKTAFAADTYN 230 (788)
Q Consensus 207 ~~~vi~I~G~gGiGKTtLa~~v~~ 230 (788)
..++|+|+|.+|+||||++..+..
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~ 123 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAY 123 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999988875
No 401
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=91.34 E-value=0.15 Score=51.65 Aligned_cols=23 Identities=30% Similarity=0.408 Sum_probs=21.0
Q ss_pred cEEEEEEcCCCChHHHHHHHHHc
Q 003890 208 LSVVAILNGSGFDKTAFAADTYN 230 (788)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~ 230 (788)
-.+++|+|..|+|||||++.+..
T Consensus 34 Ge~~~iiGpnGsGKSTLl~~l~G 56 (275)
T 3gfo_A 34 GEVTAILGGNGVGKSTLFQNFNG 56 (275)
T ss_dssp TSEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHHc
Confidence 35899999999999999999986
No 402
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=91.32 E-value=0.082 Score=51.74 Aligned_cols=23 Identities=13% Similarity=-0.113 Sum_probs=21.0
Q ss_pred cEEEEEEcCCCChHHHHHHHHHc
Q 003890 208 LSVVAILNGSGFDKTAFAADTYN 230 (788)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~ 230 (788)
...|.|.|++|+||||+|+.+..
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKT 27 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45789999999999999999987
No 403
>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A*
Probab=91.28 E-value=0.2 Score=54.69 Aligned_cols=87 Identities=11% Similarity=0.093 Sum_probs=49.9
Q ss_pred EEEEEEcCCCChHHHHH-HHHHcccCcccccce-eEEEEeCCCCC-hHHHHHHHHHHcCC--------CCCCcccccC--
Q 003890 209 SVVAILNGSGFDKTAFA-ADTYNNNHIKFYFDC-LAWVRVSIAYD-SGKILDDIIKSVMP--------PSRVSVIIGE-- 275 (788)
Q Consensus 209 ~vi~I~G~gGiGKTtLa-~~v~~~~~~~~~F~~-~~wv~vs~~~~-~~~~~~~il~~l~~--------~~~~~~~~~~-- 275 (788)
..++|+|..|+|||+|| ..+.+. .. -+. ++++-+++... +.++.+++...=.. ...++.....
T Consensus 164 QR~~Ifg~~g~GKT~Lal~~I~~~--~~--~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~rtvvV~atad~p~~~r~~a 239 (507)
T 1fx0_A 164 QRELIIGDRQTGKTAVATDTILNQ--QG--QNVICVYVAIGQKASSVAQVVTNFQERGAMEYTIVVAETADSPATLQYLA 239 (507)
T ss_dssp CBCBEEESSSSSHHHHHHHHHHTC--CT--TTCEEEEEEESCCHHHHHHHHHHTGGGTGGGSEEEEEECTTSCGGGTTHH
T ss_pred CEEEEecCCCCCccHHHHHHHHHh--hc--CCcEEEEEEcCCCchHHHHHHHHHHhcCccccceEEEECCCCCHHHHHHH
Confidence 46789999999999995 577773 22 343 57777887754 44555544331100 0000000011
Q ss_pred --CHHHHHHHHHHHhcCCcEEEEEeCCC
Q 003890 276 --DYKLKKTILRDYLTNKKYFIVLDDVF 301 (788)
Q Consensus 276 --~~~~~~~~l~~~l~~kr~LlVLDdvw 301 (788)
..-..++.++. +|+.+|+++||+-
T Consensus 240 ~~~a~tiAEyfrd--~G~dVLli~Dslt 265 (507)
T 1fx0_A 240 PYTGAALAEYFMY--RERHTLIIYDDLS 265 (507)
T ss_dssp HHHHHHHHHHHHH--TTCEEEEEEECHH
T ss_pred HHHHHHHHHHHHH--cCCcEEEEEecHH
Confidence 11223334443 6899999999984
No 404
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=91.20 E-value=0.11 Score=48.76 Aligned_cols=23 Identities=22% Similarity=0.229 Sum_probs=21.4
Q ss_pred cEEEEEEcCCCChHHHHHHHHHc
Q 003890 208 LSVVAILNGSGFDKTAFAADTYN 230 (788)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~ 230 (788)
..+++|+|..|+|||||++.+..
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~ 28 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIP 28 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHH
Confidence 67899999999999999999887
No 405
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=91.20 E-value=0.16 Score=51.13 Aligned_cols=23 Identities=26% Similarity=0.286 Sum_probs=21.2
Q ss_pred cEEEEEEcCCCChHHHHHHHHHc
Q 003890 208 LSVVAILNGSGFDKTAFAADTYN 230 (788)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~ 230 (788)
-.+++|+|..|+|||||.+.+..
T Consensus 32 Ge~~~liG~nGsGKSTLlk~l~G 54 (262)
T 1b0u_A 32 GDVISIIGSSGSGKSTFLRCINF 54 (262)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 46899999999999999999986
No 406
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=91.18 E-value=0.12 Score=53.18 Aligned_cols=23 Identities=22% Similarity=0.160 Sum_probs=21.2
Q ss_pred cEEEEEEcCCCChHHHHHHHHHc
Q 003890 208 LSVVAILNGSGFDKTAFAADTYN 230 (788)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~ 230 (788)
..+++|+|..|+||||+++.+..
T Consensus 100 g~vi~lvG~nGsGKTTll~~Lag 122 (302)
T 3b9q_A 100 PAVIMIVGVNGGGKTTSLGKLAH 122 (302)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHH
Confidence 57999999999999999998876
No 407
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=91.18 E-value=0.12 Score=53.58 Aligned_cols=24 Identities=13% Similarity=0.011 Sum_probs=22.0
Q ss_pred CcEEEEEEcCCCChHHHHHHHHHc
Q 003890 207 GLSVVAILNGSGFDKTAFAADTYN 230 (788)
Q Consensus 207 ~~~vi~I~G~gGiGKTtLa~~v~~ 230 (788)
...+|+|+|..|+|||||++.+..
T Consensus 79 ~g~iigI~G~~GsGKSTl~~~L~~ 102 (308)
T 1sq5_A 79 IPYIISIAGSVAVGKSTTARVLQA 102 (308)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999999887
No 408
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=91.18 E-value=0.1 Score=50.19 Aligned_cols=21 Identities=24% Similarity=0.173 Sum_probs=20.1
Q ss_pred EEEEEcCCCChHHHHHHHHHc
Q 003890 210 VVAILNGSGFDKTAFAADTYN 230 (788)
Q Consensus 210 vi~I~G~gGiGKTtLa~~v~~ 230 (788)
+|+|.|+.|+||||+|+.+..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 899999999999999999987
No 409
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=91.16 E-value=0.097 Score=51.41 Aligned_cols=23 Identities=22% Similarity=0.089 Sum_probs=21.0
Q ss_pred cEEEEEEcCCCChHHHHHHHHHc
Q 003890 208 LSVVAILNGSGFDKTAFAADTYN 230 (788)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~ 230 (788)
-.+++|+|..|+|||||.+.+..
T Consensus 30 Ge~~~iiG~nGsGKSTLl~~l~G 52 (224)
T 2pcj_A 30 GEFVSIIGASGSGKSTLLYILGL 52 (224)
T ss_dssp TCEEEEEECTTSCHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 35899999999999999999986
No 410
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=91.11 E-value=0.89 Score=50.49 Aligned_cols=54 Identities=15% Similarity=0.151 Sum_probs=36.0
Q ss_pred CcEEEEEEcCCCChHHHHHHHHHcccCcccccceeEEEEeCCCCChHHHHHHHHHHc
Q 003890 207 GLSVVAILNGSGFDKTAFAADTYNNNHIKFYFDCLAWVRVSIAYDSGKILDDIIKSV 263 (788)
Q Consensus 207 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~~l 263 (788)
.-.++.|.|.+|+||||||.++..+...+.. ..++|++. +-+..++...++...
T Consensus 241 ~G~l~li~G~pG~GKT~lal~~a~~~a~~~g-~~vl~~s~--E~s~~~l~~r~~~~~ 294 (503)
T 1q57_A 241 GGEVIMVTSGSGMVMSTFVRQQALQWGTAMG-KKVGLAML--EESVEETAEDLIGLH 294 (503)
T ss_dssp TTCEEEEEESSCHHHHHHHHHHHHHHTTTSC-CCEEEEES--SSCHHHHHHHHHHHH
T ss_pred CCeEEEEeecCCCCchHHHHHHHHHHHHhcC-CcEEEEec--cCCHHHHHHHHHHHH
Confidence 3568889999999999999888764322211 13677655 334567777665544
No 411
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=91.09 E-value=0.11 Score=54.07 Aligned_cols=22 Identities=14% Similarity=0.235 Sum_probs=20.8
Q ss_pred EEEEEEcCCCChHHHHHHHHHc
Q 003890 209 SVVAILNGSGFDKTAFAADTYN 230 (788)
Q Consensus 209 ~vi~I~G~gGiGKTtLa~~v~~ 230 (788)
.+|+|.|+.|+||||||+.+..
T Consensus 8 ~lI~I~GptgSGKTtla~~La~ 29 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAK 29 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHH
Confidence 5899999999999999999987
No 412
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=91.05 E-value=0.12 Score=53.68 Aligned_cols=23 Identities=13% Similarity=0.303 Sum_probs=21.5
Q ss_pred cEEEEEEcCCCChHHHHHHHHHc
Q 003890 208 LSVVAILNGSGFDKTAFAADTYN 230 (788)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~ 230 (788)
.++|.|+|+.|+||||||..+..
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~LA~ 62 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDLAA 62 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHT
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999998
No 413
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=90.92 E-value=0.094 Score=50.79 Aligned_cols=22 Identities=27% Similarity=0.178 Sum_probs=20.1
Q ss_pred EEEEEEcCCCChHHHHHHHHHc
Q 003890 209 SVVAILNGSGFDKTAFAADTYN 230 (788)
Q Consensus 209 ~vi~I~G~gGiGKTtLa~~v~~ 230 (788)
.+++|+|..|+|||||++.+..
T Consensus 23 e~~~liG~nGsGKSTLl~~l~G 44 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAV 44 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 4899999999999999999875
No 414
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=90.90 E-value=0.16 Score=46.76 Aligned_cols=23 Identities=9% Similarity=0.156 Sum_probs=20.8
Q ss_pred EEEEEEcCCCChHHHHHHHHHcc
Q 003890 209 SVVAILNGSGFDKTAFAADTYNN 231 (788)
Q Consensus 209 ~vi~I~G~gGiGKTtLa~~v~~~ 231 (788)
..|+|+|.+|+|||||.+.+...
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 57899999999999999999874
No 415
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=90.73 E-value=0.28 Score=53.41 Aligned_cols=101 Identities=16% Similarity=0.150 Sum_probs=56.7
Q ss_pred HHHHHHhcCCCCcEEEEEEcCCCChHHHHH-HHHHcccCcccccce-eEEEEeCCCCC-hHHHHHHHHHHcCCCCCCc--
Q 003890 196 ELFDLLIEGPSGLSVVAILNGSGFDKTAFA-ADTYNNNHIKFYFDC-LAWVRVSIAYD-SGKILDDIIKSVMPPSRVS-- 270 (788)
Q Consensus 196 ~i~~~L~~~~~~~~vi~I~G~gGiGKTtLa-~~v~~~~~~~~~F~~-~~wv~vs~~~~-~~~~~~~il~~l~~~~~~~-- 270 (788)
++++.|..=. .-..++|+|..|+|||+|| ..+.+.. .-+. ++++-+++... +.++.+++...=......-
T Consensus 151 raID~l~Pig-rGQR~~Ifg~~g~GKT~Lal~~I~~~~----~~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~~tvvV~ 225 (502)
T 2qe7_A 151 KAIDSMIPIG-RGQRELIIGDRQTGKTTIAIDTIINQK----GQDVICIYVAIGQKQSTVAGVVETLRQHDALDYTIVVT 225 (502)
T ss_dssp HHHHHSSCCB-TTCBCEEEECSSSCHHHHHHHHHHGGG----SCSEEEEEEEESCCHHHHHHHHHHHHHTTCSTTEEEEE
T ss_pred eecccccccc-cCCEEEEECCCCCCchHHHHHHHHHhh----cCCcEEEEEECCCcchHHHHHHHHHhhCCCcceeEEEE
Confidence 4555554321 2346789999999999995 5777732 2343 57778888754 5566666655321111100
Q ss_pred ccccCC-HHH-----HHHHHHHHh--cCCcEEEEEeCCC
Q 003890 271 VIIGED-YKL-----KKTILRDYL--TNKKYFIVLDDVF 301 (788)
Q Consensus 271 ~~~~~~-~~~-----~~~~l~~~l--~~kr~LlVLDdvw 301 (788)
...+.. ... ....+.+++ +|+.+|+++||+-
T Consensus 226 atad~p~~~r~~a~~~a~tiAEyfrd~G~dVLl~~Dslt 264 (502)
T 2qe7_A 226 ASASEPAPLLYLAPYAGCAMGEYFMYKGKHALVVYDDLS 264 (502)
T ss_dssp ECTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECHH
T ss_pred ECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEEecHH
Confidence 000111 111 112344444 5799999999984
No 416
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=90.68 E-value=0.53 Score=49.05 Aligned_cols=52 Identities=12% Similarity=0.032 Sum_probs=35.5
Q ss_pred cEEEEEEcCCCChHHHHHHHHHcccCcccccceeEEEEeCCCCChHHHHHHHHHHc
Q 003890 208 LSVVAILNGSGFDKTAFAADTYNNNHIKFYFDCLAWVRVSIAYDSGKILDDIIKSV 263 (788)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~~l 263 (788)
-.++.|.|.+|+||||||..++.+....+ ..++|++. +-+...+...++...
T Consensus 46 G~LiiIaG~pG~GKTt~al~ia~~~a~~g--~~Vl~fSl--Ems~~ql~~Rlls~~ 97 (338)
T 4a1f_A 46 GSLVIIGARPSMGKTSLMMNMVLSALNDD--RGVAVFSL--EMSAEQLALRALSDL 97 (338)
T ss_dssp TCEEEEEECTTSCHHHHHHHHHHHHHHTT--CEEEEEES--SSCHHHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHcC--CeEEEEeC--CCCHHHHHHHHHHHh
Confidence 46889999999999999998877432211 23566543 456667777776544
No 417
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=90.67 E-value=0.13 Score=50.70 Aligned_cols=23 Identities=22% Similarity=0.173 Sum_probs=21.1
Q ss_pred cEEEEEEcCCCChHHHHHHHHHc
Q 003890 208 LSVVAILNGSGFDKTAFAADTYN 230 (788)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~ 230 (788)
..+|+|.|++|+||||+|+.+..
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~ 31 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLAR 31 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999999987
No 418
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A
Probab=90.67 E-value=0.31 Score=53.52 Aligned_cols=59 Identities=12% Similarity=0.111 Sum_probs=40.8
Q ss_pred HHHHHHhcCCCCcEEEEEEcCCCChHHHHHHHHHcccCcccccceeEEEEeCCCCC-hHHHHHHH
Q 003890 196 ELFDLLIEGPSGLSVVAILNGSGFDKTAFAADTYNNNHIKFYFDCLAWVRVSIAYD-SGKILDDI 259 (788)
Q Consensus 196 ~i~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~-~~~~~~~i 259 (788)
++++.|..-. .-..++|.|..|+|||+|++++.+.. +-+.++++-+++... +.++.+++
T Consensus 216 rvID~l~Pig-kGqr~~I~g~~g~GKT~L~~~ia~~~----~~~~~V~~~iGER~~Ev~e~~~~~ 275 (588)
T 3mfy_A 216 RVIDTFFPQA-KGGTAAIPGPAGSGKTVTQHQLAKWS----DAQVVIYIGCGERGNEMTDVLEEF 275 (588)
T ss_dssp HHHHHHSCEE-TTCEEEECSCCSHHHHHHHHHHHHHS----SCSEEEEEECCSSSSHHHHHHHHT
T ss_pred chhhccCCcc-cCCeEEeecCCCCCHHHHHHHHHhcc----CCCEEEEEEecccHHHHHHHHHHH
Confidence 4666665421 23578999999999999999987732 224688888888865 44444443
No 419
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*
Probab=90.63 E-value=0.14 Score=55.52 Aligned_cols=104 Identities=13% Similarity=0.110 Sum_probs=57.8
Q ss_pred HHHHHHhcCCCCcEEEEEEcCCCChHHHHHHHHHcccCccccc--ceeEEEEeCCCCC-hHHHHHHHHHHcCCCCCCc--
Q 003890 196 ELFDLLIEGPSGLSVVAILNGSGFDKTAFAADTYNNNHIKFYF--DCLAWVRVSIAYD-SGKILDDIIKSVMPPSRVS-- 270 (788)
Q Consensus 196 ~i~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F--~~~~wv~vs~~~~-~~~~~~~il~~l~~~~~~~-- 270 (788)
++++.|..=. .-..++|.|..|+|||+|+.++..+....+.= +.++++-+++... +.++.+++...=......-
T Consensus 141 r~ID~l~pig-rGQr~~Ifgg~G~GKt~Ll~~Ia~~~~~n~~~~~~~~V~~~iGER~~Ev~e~~~~~~~~g~m~rtvvV~ 219 (469)
T 2c61_A 141 STIDGTNTLV-RGQKLPIFSASGLPHNEIALQIARQASVPGSESAFAVVFAAMGITNEEAQYFMSDFEKTGALERAVVFL 219 (469)
T ss_dssp HHHHTTSCCB-TTCBCCEEECTTSCHHHHHHHHHHHCBCTTCSSCEEEEEEEEEECHHHHHHHHHHHHHHSGGGGEEEEE
T ss_pred Eeeeeeeccc-cCCEEEEECCCCCCHHHHHHHHHHHHhhccCCCCcEEEEEEccCCcHHHHHHHHHHHhccCccceEEEE
Confidence 3455554321 13456789999999999999999864432211 2467777777654 5666666655311110000
Q ss_pred ccccCCH------HHHHHHHHHHh---cCCcEEEEEeCC
Q 003890 271 VIIGEDY------KLKKTILRDYL---TNKKYFIVLDDV 300 (788)
Q Consensus 271 ~~~~~~~------~~~~~~l~~~l---~~kr~LlVLDdv 300 (788)
...+... -...-.+.+++ +|+.+|+++||+
T Consensus 220 ~tsd~p~~~r~~~~~~a~tiAEyfrdd~G~dVLl~~Dsl 258 (469)
T 2c61_A 220 NLADDPAVERIVTPRMALTAAEYLAYEHGMHVLVILTDI 258 (469)
T ss_dssp EETTSCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECH
T ss_pred ECCCCCHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEeCH
Confidence 0001111 11122344444 479999999997
No 420
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=90.59 E-value=0.12 Score=51.24 Aligned_cols=23 Identities=17% Similarity=0.234 Sum_probs=21.1
Q ss_pred cEEEEEEcCCCChHHHHHHHHHc
Q 003890 208 LSVVAILNGSGFDKTAFAADTYN 230 (788)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~ 230 (788)
-.+++|+|..|+|||||.+.++.
T Consensus 32 Ge~~~l~G~nGsGKSTLl~~l~G 54 (240)
T 1ji0_A 32 GQIVTLIGANGAGKTTTLSAIAG 54 (240)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 35899999999999999999987
No 421
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=90.58 E-value=0.2 Score=50.20 Aligned_cols=23 Identities=13% Similarity=0.085 Sum_probs=21.2
Q ss_pred cEEEEEEcCCCChHHHHHHHHHc
Q 003890 208 LSVVAILNGSGFDKTAFAADTYN 230 (788)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~ 230 (788)
-.+++|+|..|+|||||.+.++.
T Consensus 41 Gei~~l~G~NGsGKSTLlk~l~G 63 (256)
T 1vpl_A 41 GEIFGLIGPNGAGKTTTLRIIST 63 (256)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTT
T ss_pred CcEEEEECCCCCCHHHHHHHHhc
Confidence 45899999999999999999986
No 422
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=90.57 E-value=0.2 Score=49.96 Aligned_cols=23 Identities=22% Similarity=0.228 Sum_probs=21.1
Q ss_pred cEEEEEEcCCCChHHHHHHHHHc
Q 003890 208 LSVVAILNGSGFDKTAFAADTYN 230 (788)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~ 230 (788)
-.+++|+|..|+|||||.+.+..
T Consensus 35 Ge~~~i~G~nGsGKSTLl~~l~G 57 (247)
T 2ff7_A 35 GEVIGIVGRSGSGKSTLTKLIQR 57 (247)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 35899999999999999999987
No 423
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=90.55 E-value=1.2 Score=50.31 Aligned_cols=23 Identities=26% Similarity=0.179 Sum_probs=21.0
Q ss_pred cEEEEEEcCCCChHHHHHHHHHc
Q 003890 208 LSVVAILNGSGFDKTAFAADTYN 230 (788)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~ 230 (788)
-.+++|+|..|.|||||++.+..
T Consensus 369 G~~~~ivG~sGsGKSTll~~l~g 391 (582)
T 3b5x_A 369 GKTVALVGRSGSGKSTIANLFTR 391 (582)
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 46899999999999999999876
No 424
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=90.54 E-value=0.13 Score=52.04 Aligned_cols=23 Identities=22% Similarity=0.187 Sum_probs=21.2
Q ss_pred cEEEEEEcCCCChHHHHHHHHHc
Q 003890 208 LSVVAILNGSGFDKTAFAADTYN 230 (788)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~ 230 (788)
-.+++|+|..|+|||||++.+..
T Consensus 37 Ge~~~liG~nGsGKSTLl~~l~G 59 (266)
T 4g1u_C 37 GEMVAIIGPNGAGKSTLLRLLTG 59 (266)
T ss_dssp TCEEEEECCTTSCHHHHHHHHTS
T ss_pred CCEEEEECCCCCcHHHHHHHHhc
Confidence 45899999999999999999986
No 425
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=90.53 E-value=0.14 Score=51.02 Aligned_cols=23 Identities=22% Similarity=0.111 Sum_probs=21.2
Q ss_pred cEEEEEEcCCCChHHHHHHHHHc
Q 003890 208 LSVVAILNGSGFDKTAFAADTYN 230 (788)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~ 230 (788)
-.+++|+|..|+|||||.+.+..
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~G 50 (243)
T 1mv5_A 28 NSIIAFAGPSGGGKSTIFSLLER 50 (243)
T ss_dssp TEEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 46999999999999999999886
No 426
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=90.52 E-value=0.13 Score=51.33 Aligned_cols=23 Identities=17% Similarity=0.144 Sum_probs=21.2
Q ss_pred cEEEEEEcCCCChHHHHHHHHHc
Q 003890 208 LSVVAILNGSGFDKTAFAADTYN 230 (788)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~ 230 (788)
-.+++|+|..|+|||||.+.+..
T Consensus 29 Ge~~~l~G~nGsGKSTLlk~l~G 51 (250)
T 2d2e_A 29 GEVHALMGPNGAGKSTLGKILAG 51 (250)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 35899999999999999999987
No 427
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=90.51 E-value=0.13 Score=51.85 Aligned_cols=23 Identities=26% Similarity=0.221 Sum_probs=21.2
Q ss_pred cEEEEEEcCCCChHHHHHHHHHc
Q 003890 208 LSVVAILNGSGFDKTAFAADTYN 230 (788)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~ 230 (788)
-.+++|+|..|+|||||.+.+..
T Consensus 50 Gei~~liG~NGsGKSTLlk~l~G 72 (263)
T 2olj_A 50 GEVVVVIGPSGSGKSTFLRCLNL 72 (263)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEEcCCCCcHHHHHHHHHc
Confidence 46899999999999999999986
No 428
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=90.50 E-value=0.13 Score=51.78 Aligned_cols=23 Identities=17% Similarity=0.146 Sum_probs=21.1
Q ss_pred cEEEEEEcCCCChHHHHHHHHHc
Q 003890 208 LSVVAILNGSGFDKTAFAADTYN 230 (788)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~ 230 (788)
-.+++|+|..|+|||||.+.+..
T Consensus 33 Ge~~~liG~nGsGKSTLlk~l~G 55 (257)
T 1g6h_A 33 GDVTLIIGPNGSGKSTLINVITG 55 (257)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 35899999999999999999986
No 429
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=90.49 E-value=0.13 Score=50.34 Aligned_cols=21 Identities=14% Similarity=0.093 Sum_probs=19.5
Q ss_pred EEEEEcCCCChHHHHHHHHHc
Q 003890 210 VVAILNGSGFDKTAFAADTYN 230 (788)
Q Consensus 210 vi~I~G~gGiGKTtLa~~v~~ 230 (788)
.|.|.|+.|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999999987
No 430
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=90.46 E-value=0.21 Score=47.73 Aligned_cols=37 Identities=11% Similarity=0.029 Sum_probs=27.2
Q ss_pred HHHHHHHHhcCCCCcEEEEEEcCCCChHHHHHHHHHcc
Q 003890 194 REELFDLLIEGPSGLSVVAILNGSGFDKTAFAADTYNN 231 (788)
Q Consensus 194 ~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 231 (788)
...+..++..- +.-..+.|+|++|+||||+|..+++.
T Consensus 45 ~~~l~~~~~~i-Pkkn~ili~GPPGtGKTt~a~ala~~ 81 (212)
T 1tue_A 45 LGALKSFLKGT-PKKNCLVFCGPANTGKSYFGMSFIHF 81 (212)
T ss_dssp HHHHHHHHHTC-TTCSEEEEESCGGGCHHHHHHHHHHH
T ss_pred HHHHHHHHhcC-CcccEEEEECCCCCCHHHHHHHHHHH
Confidence 55566666532 22346899999999999999998873
No 431
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=90.43 E-value=0.22 Score=52.93 Aligned_cols=36 Identities=11% Similarity=0.019 Sum_probs=27.0
Q ss_pred HHHHHHHhcCCCCcEEEEEEcCCCChHHHHHHHHHc
Q 003890 195 EELFDLLIEGPSGLSVVAILNGSGFDKTAFAADTYN 230 (788)
Q Consensus 195 ~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 230 (788)
..+++-+..+-..-.+++|+|++|+|||||++.+..
T Consensus 156 ~~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 156 YDFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp HHHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHh
Confidence 344444433333456999999999999999999997
No 432
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=90.36 E-value=0.14 Score=51.69 Aligned_cols=23 Identities=26% Similarity=0.258 Sum_probs=21.3
Q ss_pred cEEEEEEcCCCChHHHHHHHHHc
Q 003890 208 LSVVAILNGSGFDKTAFAADTYN 230 (788)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~ 230 (788)
-.+++|+|..|+|||||.+.++.
T Consensus 46 Ge~~~l~G~NGsGKSTLlk~l~G 68 (267)
T 2zu0_C 46 GEVHAIMGPNGSGKSTLSATLAG 68 (267)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 45899999999999999999987
No 433
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=90.36 E-value=0.13 Score=50.14 Aligned_cols=22 Identities=9% Similarity=0.057 Sum_probs=20.2
Q ss_pred EEEEEEcCCCChHHHHHHHHHc
Q 003890 209 SVVAILNGSGFDKTAFAADTYN 230 (788)
Q Consensus 209 ~vi~I~G~gGiGKTtLa~~v~~ 230 (788)
..|.|.|++|+||||+|+.+..
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4688999999999999999987
No 434
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=90.34 E-value=0.21 Score=50.54 Aligned_cols=23 Identities=30% Similarity=0.244 Sum_probs=21.2
Q ss_pred cEEEEEEcCCCChHHHHHHHHHc
Q 003890 208 LSVVAILNGSGFDKTAFAADTYN 230 (788)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~ 230 (788)
-.+++|+|..|+|||||++.+..
T Consensus 45 Ge~~~i~G~nGsGKSTLlk~l~G 67 (271)
T 2ixe_A 45 GKVTALVGPNGSGKSTVAALLQN 67 (271)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 46899999999999999999986
No 435
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=90.29 E-value=0.13 Score=49.97 Aligned_cols=21 Identities=14% Similarity=0.015 Sum_probs=19.4
Q ss_pred EEEEEcCCCChHHHHHHHHHc
Q 003890 210 VVAILNGSGFDKTAFAADTYN 230 (788)
Q Consensus 210 vi~I~G~gGiGKTtLa~~v~~ 230 (788)
.|.|.|++|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999987
No 436
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=90.21 E-value=0.15 Score=52.69 Aligned_cols=22 Identities=14% Similarity=0.199 Sum_probs=20.7
Q ss_pred EEEEEEcCCCChHHHHHHHHHc
Q 003890 209 SVVAILNGSGFDKTAFAADTYN 230 (788)
Q Consensus 209 ~vi~I~G~gGiGKTtLa~~v~~ 230 (788)
.+|.|+|+.|+||||||+.+..
T Consensus 6 ~~i~i~GptGsGKTtla~~La~ 27 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALAD 27 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999987
No 437
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*
Probab=90.18 E-value=0.13 Score=55.31 Aligned_cols=93 Identities=13% Similarity=0.207 Sum_probs=52.6
Q ss_pred EEEEEEcCCCChHHHHHHHHHcccCcc--------cccc-eeEEEEeCCCCC-hHHHHHHHHHHcCCCCCC---cccccC
Q 003890 209 SVVAILNGSGFDKTAFAADTYNNNHIK--------FYFD-CLAWVRVSIAYD-SGKILDDIIKSVMPPSRV---SVIIGE 275 (788)
Q Consensus 209 ~vi~I~G~gGiGKTtLa~~v~~~~~~~--------~~F~-~~~wv~vs~~~~-~~~~~~~il~~l~~~~~~---~~~~~~ 275 (788)
..++|.|..|+|||+|+.++.+..... ++=+ .++++-+++... +.++.+++...=...... ...+..
T Consensus 148 Qr~~Ifgg~G~GKt~L~~~Ia~~~~a~~~~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~l~~~g~~~rtvvv~~t~d~p 227 (464)
T 3gqb_B 148 QKLPIFSGSGLPANEIAAQIARQATVRPDLSGEGEKEEPFAVVFAAMGITQRELSYFIQEFERTGALSRSVLFLNKADDP 227 (464)
T ss_dssp CBCCEEEETTSCHHHHHHHHHHHCBCCHHHHCCCSTTCCEEEEEEEEEECHHHHHHHHHHHHHTSGGGGEEEEEEETTSC
T ss_pred CEEEEecCCCCCchHHHHHHHHHHHhcccccccccCCCceEEEEEEecCchHHHHHHHHHhhhcccccceEEEEECCCCC
Confidence 356899999999999999998854431 1112 467777777643 555666554421000000 000111
Q ss_pred CHH-----HHHHHHHHHh---cCCcEEEEEeCCC
Q 003890 276 DYK-----LKKTILRDYL---TNKKYFIVLDDVF 301 (788)
Q Consensus 276 ~~~-----~~~~~l~~~l---~~kr~LlVLDdvw 301 (788)
... ...-.+.+++ +|+.+|+++||+-
T Consensus 228 ~~~r~~~~~~a~tiAEyfrd~~G~~VLl~~DdlT 261 (464)
T 3gqb_B 228 TIERILTPRMALTVAEYLAFEHDYHVLVILTDMT 261 (464)
T ss_dssp THHHHHHHHHHHHHHHHHHHTTCCEEEEEEETHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCeEEEEEcChH
Confidence 111 1122345555 3799999999994
No 438
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A
Probab=90.15 E-value=0.34 Score=52.62 Aligned_cols=101 Identities=14% Similarity=0.121 Sum_probs=56.2
Q ss_pred HHHHHHhcCCCCcEEEEEEcCCCChHHHHH-HHHHcccCcccccce-eEEEEeCCCCC-hHHHHHHHHHHcCCCCCCc--
Q 003890 196 ELFDLLIEGPSGLSVVAILNGSGFDKTAFA-ADTYNNNHIKFYFDC-LAWVRVSIAYD-SGKILDDIIKSVMPPSRVS-- 270 (788)
Q Consensus 196 ~i~~~L~~~~~~~~vi~I~G~gGiGKTtLa-~~v~~~~~~~~~F~~-~~wv~vs~~~~-~~~~~~~il~~l~~~~~~~-- 270 (788)
+.++.|..=. .-..++|.|..|+|||+|| ..+.+. .+-+. ++++-+++... +.++.+++...=......-
T Consensus 151 kaID~l~Pig-rGQR~~Ifg~~g~GKT~l~l~~I~n~----~~~dv~~V~~~IGeR~~ev~e~~~~l~~~g~m~~tvvV~ 225 (513)
T 3oaa_A 151 KAVDSMIPIG-RGQRELIIGDRQTGKTALAIDAIINQ----RDSGIKCIYVAIGQKASTISNVVRKLEEHGALANTIVVV 225 (513)
T ss_dssp HHHHHHSCCB-TTCBCEEEESSSSSHHHHHHHHHHTT----SSSSCEEEEEEESCCHHHHHHHHHHHHHHSCSTTEEEEE
T ss_pred eeeccccccc-cCCEEEeecCCCCCcchHHHHHHHhh----ccCCceEEEEEecCChHHHHHHHHHHhhcCcccceEEEE
Confidence 4556664421 1346789999999999996 567762 22333 67888888754 5566666544311111000
Q ss_pred ccccCCH-H-----HHHHHHHHHh--cCCcEEEEEeCCC
Q 003890 271 VIIGEDY-K-----LKKTILRDYL--TNKKYFIVLDDVF 301 (788)
Q Consensus 271 ~~~~~~~-~-----~~~~~l~~~l--~~kr~LlVLDdvw 301 (788)
...+... . .....+.+++ +|+.+||++||+-
T Consensus 226 atad~p~~~r~~a~~~a~tiAEyfrd~G~dVLli~Dslt 264 (513)
T 3oaa_A 226 ATASESAALQYLAPYAGCAMGEYFRDRGEDALIIYDDLS 264 (513)
T ss_dssp ECTTSCHHHHHHHHHHHHHHHHHHHHTTCEEEEEEETHH
T ss_pred ECCCCChHHHHHHHHHHHHHHHHHHhcCCCEEEEecChH
Confidence 0000111 1 1111233333 6899999999994
No 439
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=90.13 E-value=0.14 Score=48.63 Aligned_cols=24 Identities=25% Similarity=0.336 Sum_probs=21.6
Q ss_pred cEEEEEEcCCCChHHHHHHHHHcc
Q 003890 208 LSVVAILNGSGFDKTAFAADTYNN 231 (788)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~~ 231 (788)
.-.|+|+|..|+|||||.+.+...
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~ 52 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRN 52 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 568899999999999999998874
No 440
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=90.12 E-value=0.17 Score=53.30 Aligned_cols=23 Identities=22% Similarity=0.160 Sum_probs=21.2
Q ss_pred cEEEEEEcCCCChHHHHHHHHHc
Q 003890 208 LSVVAILNGSGFDKTAFAADTYN 230 (788)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~ 230 (788)
..+++|+|..|+||||+++.++.
T Consensus 157 g~vi~lvG~nGsGKTTll~~Lag 179 (359)
T 2og2_A 157 PAVIMIVGVNGGGKTTSLGKLAH 179 (359)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHHHHHh
Confidence 57999999999999999998876
No 441
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=90.12 E-value=1.2 Score=49.75 Aligned_cols=127 Identities=14% Similarity=0.104 Sum_probs=0.0
Q ss_pred EEEEEEcCCCChHHHHHHHHHcccCccccccee------------------------------EEEEeCCCCChHH----
Q 003890 209 SVVAILNGSGFDKTAFAADTYNNNHIKFYFDCL------------------------------AWVRVSIAYDSGK---- 254 (788)
Q Consensus 209 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~------------------------------~wv~vs~~~~~~~---- 254 (788)
.+++|+|..|+|||||.+.+.. ........+ ......+..+...
T Consensus 26 ei~gLiGpNGaGKSTLlkiL~G--l~~p~~G~i~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (538)
T 3ozx_A 26 TILGVLGKNGVGKTTVLKILAG--EIIPNFGDPNSKVGKDEVLKRFRGKEIYNYFKELYSNELKIVHKIQYVEYASKFLK 103 (538)
T ss_dssp EEEEEECCTTSSHHHHHHHHTT--SSCCCTTCTTSCCCHHHHHHHHTTSTTHHHHHHHHTTCCCEEEECSCTTGGGTTCC
T ss_pred CEEEEECCCCCcHHHHHHHHhc--CCCCCCCccccccchhhHHhhcCCeeHHHHHHHHhhcccchhhccchhhhhhhhcc
Q ss_pred --------------HHHHHHHHcCCCCCCccc--ccCCHHHHHHHHHHHhcCCcEEEEEeCCCC--ChhhHHHHhhhcCC
Q 003890 255 --------------ILDDIIKSVMPPSRVSVI--IGEDYKLKKTILRDYLTNKKYFIVLDDVFN--DSDIWDDLEQVLPD 316 (788)
Q Consensus 255 --------------~~~~il~~l~~~~~~~~~--~~~~~~~~~~~l~~~l~~kr~LlVLDdvw~--~~~~~~~l~~~l~~ 316 (788)
...++++.++........ .-+.-+.-.-.|.+.|..+.=+++||.--. +...-..+...+..
T Consensus 104 ~~v~~~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~Qrv~iA~aL~~~p~illlDEPts~LD~~~~~~l~~~l~~ 183 (538)
T 3ozx_A 104 GTVNEILTKIDERGKKDEVKELLNMTNLWNKDANILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRE 183 (538)
T ss_dssp SBHHHHHHHHCCSSCHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHH
T ss_pred CcHHHHhhcchhHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHH
Q ss_pred CCCCcEEEEecCChHHHhhcc
Q 003890 317 NQNGSRVLITVTDLDLLESLE 337 (788)
Q Consensus 317 ~~~gskIivTTR~~~v~~~~~ 337 (788)
-..|..||++|-+...+..+.
T Consensus 184 l~~g~tii~vsHdl~~~~~~~ 204 (538)
T 3ozx_A 184 LLKNKYVIVVDHDLIVLDYLT 204 (538)
T ss_dssp HCTTSEEEEECSCHHHHHHHC
T ss_pred HhCCCEEEEEEeChHHHHhhC
No 442
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=90.11 E-value=0.16 Score=50.10 Aligned_cols=23 Identities=17% Similarity=0.058 Sum_probs=21.0
Q ss_pred cEEEEEEcCCCChHHHHHHHHHc
Q 003890 208 LSVVAILNGSGFDKTAFAADTYN 230 (788)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~ 230 (788)
...|.|.|+.|+||||+|+.+..
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~ 38 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAK 38 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45789999999999999999987
No 443
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=90.07 E-value=0.23 Score=50.13 Aligned_cols=23 Identities=9% Similarity=0.072 Sum_probs=21.1
Q ss_pred cEEEEEEcCCCChHHHHHHHHHc
Q 003890 208 LSVVAILNGSGFDKTAFAADTYN 230 (788)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~ 230 (788)
-.+++|+|..|+|||||.+.++.
T Consensus 33 Ge~~~liG~nGsGKSTLl~~i~G 55 (266)
T 2yz2_A 33 GECLLVAGNTGSGKSTLLQIVAG 55 (266)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCcHHHHHHHHhC
Confidence 45899999999999999999886
No 444
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=90.06 E-value=0.24 Score=48.76 Aligned_cols=25 Identities=16% Similarity=0.238 Sum_probs=22.3
Q ss_pred CcEEEEEEcCCCChHHHHHHHHHcc
Q 003890 207 GLSVVAILNGSGFDKTAFAADTYNN 231 (788)
Q Consensus 207 ~~~vi~I~G~gGiGKTtLa~~v~~~ 231 (788)
.-.+|.|.|+.|+||||+++.+.+.
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~ 49 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHR 49 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 3578999999999999999999984
No 445
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=90.00 E-value=0.18 Score=50.64 Aligned_cols=24 Identities=17% Similarity=0.237 Sum_probs=21.5
Q ss_pred CcEEEEEEcCCCChHHHHHHHHHc
Q 003890 207 GLSVVAILNGSGFDKTAFAADTYN 230 (788)
Q Consensus 207 ~~~vi~I~G~gGiGKTtLa~~v~~ 230 (788)
...++.+.|.||+||||++..+..
T Consensus 13 ~~~i~~~~GkgGvGKTTl~~~La~ 36 (262)
T 1yrb_A 13 ASMIVVFVGTAGSGKTTLTGEFGR 36 (262)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHH
Confidence 467888999999999999999875
No 446
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=90.00 E-value=0.15 Score=50.87 Aligned_cols=23 Identities=13% Similarity=0.210 Sum_probs=21.0
Q ss_pred cEEEEEEcCCCChHHHHHHHHHc
Q 003890 208 LSVVAILNGSGFDKTAFAADTYN 230 (788)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~ 230 (788)
-.+++|+|..|+|||||.+.+..
T Consensus 26 Ge~~~liG~NGsGKSTLlk~l~G 48 (249)
T 2qi9_C 26 GEILHLVGPNGAGKSTLLARMAG 48 (249)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCcHHHHHHHHhC
Confidence 35899999999999999999987
No 447
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=90.00 E-value=0.3 Score=55.67 Aligned_cols=42 Identities=12% Similarity=0.068 Sum_probs=36.6
Q ss_pred CCcccchhcHHHHHHHHhcCCCCcEEEEEEcCCCChHHHHHHHHHc
Q 003890 185 LDISEFERGREELFDLLIEGPSGLSVVAILNGSGFDKTAFAADTYN 230 (788)
Q Consensus 185 ~~~vGr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 230 (788)
.+++|.+..++.+...+..+ ..+.|+|.+|+||||||+.+..
T Consensus 41 ~~i~G~~~~l~~l~~~i~~g----~~vll~Gp~GtGKTtlar~ia~ 82 (604)
T 3k1j_A 41 DQVIGQEHAVEVIKTAANQK----RHVLLIGEPGTGKSMLGQAMAE 82 (604)
T ss_dssp HHCCSCHHHHHHHHHHHHTT----CCEEEECCTTSSHHHHHHHHHH
T ss_pred ceEECchhhHhhccccccCC----CEEEEEeCCCCCHHHHHHHHhc
Confidence 77999988888887777654 3789999999999999999998
No 448
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=89.97 E-value=0.15 Score=48.08 Aligned_cols=22 Identities=18% Similarity=0.289 Sum_probs=19.8
Q ss_pred EEEEEcCCCChHHHHHHHHHcc
Q 003890 210 VVAILNGSGFDKTAFAADTYNN 231 (788)
Q Consensus 210 vi~I~G~gGiGKTtLa~~v~~~ 231 (788)
-|+|+|.+|+|||||.+.+...
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999873
No 449
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=89.97 E-value=0.15 Score=51.33 Aligned_cols=23 Identities=22% Similarity=0.286 Sum_probs=21.2
Q ss_pred cEEEEEEcCCCChHHHHHHHHHc
Q 003890 208 LSVVAILNGSGFDKTAFAADTYN 230 (788)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~ 230 (788)
-.+++|+|..|+|||||.+.+..
T Consensus 46 Ge~~~i~G~nGsGKSTLl~~l~G 68 (260)
T 2ghi_A 46 GTTCALVGHTGSGKSTIAKLLYR 68 (260)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 45899999999999999999986
No 450
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=89.91 E-value=0.17 Score=51.89 Aligned_cols=23 Identities=22% Similarity=0.151 Sum_probs=21.2
Q ss_pred cEEEEEEcCCCChHHHHHHHHHc
Q 003890 208 LSVVAILNGSGFDKTAFAADTYN 230 (788)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~ 230 (788)
.++|.|.|+.|+||||||..+..
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~ 25 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAK 25 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECCCcCCHHHHHHHHHH
Confidence 46899999999999999999987
No 451
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=89.87 E-value=0.19 Score=45.81 Aligned_cols=23 Identities=13% Similarity=0.190 Sum_probs=20.5
Q ss_pred EEEEEEcCCCChHHHHHHHHHcc
Q 003890 209 SVVAILNGSGFDKTAFAADTYNN 231 (788)
Q Consensus 209 ~vi~I~G~gGiGKTtLa~~v~~~ 231 (788)
..|.++|.+|+|||||+..+...
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 56899999999999999998864
No 452
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=89.87 E-value=0.16 Score=49.01 Aligned_cols=88 Identities=13% Similarity=0.162 Sum_probs=47.0
Q ss_pred EEEEEcCCCChHHHHHHHHHcccCcccccceeEEEEeCCCCChHHHHHHHHHHcCCCCCC-----cccccCCHHHHHHHH
Q 003890 210 VVAILNGSGFDKTAFAADTYNNNHIKFYFDCLAWVRVSIAYDSGKILDDIIKSVMPPSRV-----SVIIGEDYKLKKTIL 284 (788)
Q Consensus 210 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~~l~~~~~~-----~~~~~~~~~~~~~~l 284 (788)
+|.|.|++|+||||.|+.+... |. ...++. .+++++-+..-+..... ..-.-...+-....+
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~------~g-~~~ist------GdllR~~i~~~t~lg~~~~~~~~~G~lvpd~iv~~lv 68 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKE------KG-FVHIST------GDILREAVQKGTPLGKKAKEYMERGELVPDDLIIALI 68 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH------HC-CEEEEH------HHHHHHHHHHTCHHHHHHHHHHHHTCCCCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH------HC-CeEEcH------HHHHHHHHHhcChhhhhHHHHHhcCCcCCHHHHHHHH
Confidence 5789999999999999999873 22 122322 23333222110000000 000122345567777
Q ss_pred HHHhcCCcEEEEEeCCCCChhhHHHHh
Q 003890 285 RDYLTNKKYFIVLDDVFNDSDIWDDLE 311 (788)
Q Consensus 285 ~~~l~~kr~LlVLDdvw~~~~~~~~l~ 311 (788)
.+.+..... +|||..-....+.+.+.
T Consensus 69 ~~~l~~~~~-~ilDGfPRt~~Qa~~l~ 94 (206)
T 3sr0_A 69 EEVFPKHGN-VIFDGFPRTVKQAEALD 94 (206)
T ss_dssp HHHCCSSSC-EEEESCCCSHHHHHHHH
T ss_pred HHhhccCCc-eEecCCchhHHHHHHHH
Confidence 888865444 68898863444444443
No 453
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=89.82 E-value=0.47 Score=60.49 Aligned_cols=87 Identities=14% Similarity=0.014 Sum_probs=55.9
Q ss_pred CcEEEEEEcCCCChHHHHHHHHHcccCcccccceeEEEEeCCCCChHHHHHHHHHHcCCCCCC-cccccCCHHHHHHHHH
Q 003890 207 GLSVVAILNGSGFDKTAFAADTYNNNHIKFYFDCLAWVRVSIAYDSGKILDDIIKSVMPPSRV-SVIIGEDYKLKKTILR 285 (788)
Q Consensus 207 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~~l~~~~~~-~~~~~~~~~~~~~~l~ 285 (788)
.-+++-|+|++|+|||+||.++......++ ..++|+++...++... ++.++..... ...+....+.....++
T Consensus 1426 ~g~~vll~GppGtGKT~LA~ala~ea~~~G--~~v~Fi~~e~~~~~l~-----a~~~G~dl~~l~v~~~~~~E~~l~~~~ 1498 (2050)
T 3cmu_A 1426 MGRIVEIYGPESSGKTTLTLQVIAAAQREG--KTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICD 1498 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHHTTT--CCEEEECTTSCCCHHH-----HHHTTCCTTTCEEECCSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcC--CcEEEEEcccccCHHH-----HHHcCCCchhceeecCChHHHHHHHHH
Confidence 467899999999999999999877422221 2478888887777655 3444422111 0012334456666666
Q ss_pred HHhc-CCcEEEEEeCC
Q 003890 286 DYLT-NKKYFIVLDDV 300 (788)
Q Consensus 286 ~~l~-~kr~LlVLDdv 300 (788)
+..+ .+.-+||+|.+
T Consensus 1499 ~lvr~~~~~lVVIDsi 1514 (2050)
T 3cmu_A 1499 ALARSGAVDVIVVDSV 1514 (2050)
T ss_dssp HHHHHTCCSEEEESCG
T ss_pred HHHhcCCCCEEEEcCh
Confidence 5543 56779999999
No 454
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=89.82 E-value=0.16 Score=50.88 Aligned_cols=24 Identities=17% Similarity=0.207 Sum_probs=21.4
Q ss_pred cEEEEEEcCCCChHHHHHHHHHcc
Q 003890 208 LSVVAILNGSGFDKTAFAADTYNN 231 (788)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~~ 231 (788)
-.+++|+|..|+|||||.+.+..-
T Consensus 31 Ge~~~l~G~nGsGKSTLl~~l~Gl 54 (253)
T 2nq2_C 31 GDILAVLGQNGCGKSTLLDLLLGI 54 (253)
T ss_dssp TCEEEEECCSSSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 358999999999999999999873
No 455
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=89.81 E-value=0.16 Score=51.71 Aligned_cols=23 Identities=13% Similarity=-0.068 Sum_probs=21.2
Q ss_pred cEEEEEEcCCCChHHHHHHHHHc
Q 003890 208 LSVVAILNGSGFDKTAFAADTYN 230 (788)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~ 230 (788)
-.+++|+|..|+|||||.+.+..
T Consensus 47 Ge~~~liG~NGsGKSTLlk~l~G 69 (279)
T 2ihy_A 47 GDKWILYGLNGAGKTTLLNILNA 69 (279)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCcHHHHHHHHhC
Confidence 45899999999999999999987
No 456
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=89.78 E-value=0.17 Score=52.08 Aligned_cols=22 Identities=14% Similarity=0.308 Sum_probs=20.5
Q ss_pred EEEEEEcCCCChHHHHHHHHHc
Q 003890 209 SVVAILNGSGFDKTAFAADTYN 230 (788)
Q Consensus 209 ~vi~I~G~gGiGKTtLa~~v~~ 230 (788)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5789999999999999999987
No 457
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=89.71 E-value=0.18 Score=50.69 Aligned_cols=113 Identities=17% Similarity=0.157 Sum_probs=59.4
Q ss_pred cEEEEEEcCCCChHHHHHHHHHcccCcccccceeEEE-EeCCCCChHHHHHHHHHHcCCCCCCcccccCCHHHHHHHHHH
Q 003890 208 LSVVAILNGSGFDKTAFAADTYNNNHIKFYFDCLAWV-RVSIAYDSGKILDDIIKSVMPPSRVSVIIGEDYKLKKTILRD 286 (788)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv-~vs~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~ 286 (788)
-.+++|+|..|+|||||++.+..- +...+...+++ ...-.+-.... + .+ .. +..-..+...+...+.+
T Consensus 25 g~~v~i~Gp~GsGKSTll~~l~g~--~~~~~~G~I~~~g~~i~~~~~~~---~--~~---v~-q~~~gl~~~~l~~~la~ 93 (261)
T 2eyu_A 25 MGLILVTGPTGSGKSTTIASMIDY--INQTKSYHIITIEDPIEYVFKHK---K--SI---VN-QREVGEDTKSFADALRA 93 (261)
T ss_dssp SEEEEEECSTTCSHHHHHHHHHHH--HHHHCCCEEEEEESSCCSCCCCS---S--SE---EE-EEEBTTTBSCHHHHHHH
T ss_pred CCEEEEECCCCccHHHHHHHHHHh--CCCCCCCEEEEcCCcceeecCCc---c--ee---ee-HHHhCCCHHHHHHHHHH
Confidence 579999999999999999998762 22222333332 21111100000 0 00 00 00000011223456666
Q ss_pred HhcCCcEEEEEeCCCCChhhHHHHhhhcCCCCCCcEEEEecCChHHHhh
Q 003890 287 YLTNKKYFIVLDDVFNDSDIWDDLEQVLPDNQNGSRVLITVTDLDLLES 335 (788)
Q Consensus 287 ~l~~kr~LlVLDdvw~~~~~~~~l~~~l~~~~~gskIivTTR~~~v~~~ 335 (788)
.|..++=++++|... +.+....+.... ..|.-|++||-+.++...
T Consensus 94 aL~~~p~illlDEp~-D~~~~~~~l~~~---~~g~~vl~t~H~~~~~~~ 138 (261)
T 2eyu_A 94 ALREDPDVIFVGEMR-DLETVETALRAA---ETGHLVFGTLHTNTAIDT 138 (261)
T ss_dssp HHHHCCSEEEESCCC-SHHHHHHHHHHH---HTTCEEEEEECCSSHHHH
T ss_pred HHhhCCCEEEeCCCC-CHHHHHHHHHHH---ccCCEEEEEeCcchHHHH
Confidence 666666788899997 555444333322 236678888887665543
No 458
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=89.53 E-value=0.38 Score=52.84 Aligned_cols=39 Identities=13% Similarity=0.059 Sum_probs=28.3
Q ss_pred chhcHHHHHHHHhcCCCCcEEEEEEcCCCChHHHHHHHHHcc
Q 003890 190 FERGREELFDLLIEGPSGLSVVAILNGSGFDKTAFAADTYNN 231 (788)
Q Consensus 190 r~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 231 (788)
-...++.+.+.+..++ +.+.|.|.+|+||||++..+...
T Consensus 30 Q~~av~~~~~~i~~~~---~~~li~G~aGTGKT~ll~~~~~~ 68 (459)
T 3upu_A 30 QKNAFNIVMKAIKEKK---HHVTINGPAGTGATTLTKFIIEA 68 (459)
T ss_dssp HHHHHHHHHHHHHSSS---CEEEEECCTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCC---CEEEEEeCCCCCHHHHHHHHHHH
Confidence 3444555555665543 38899999999999999888873
No 459
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=89.51 E-value=0.28 Score=45.48 Aligned_cols=25 Identities=20% Similarity=0.210 Sum_probs=22.0
Q ss_pred CcEEEEEEcCCCChHHHHHHHHHcc
Q 003890 207 GLSVVAILNGSGFDKTAFAADTYNN 231 (788)
Q Consensus 207 ~~~vi~I~G~gGiGKTtLa~~v~~~ 231 (788)
....|.|+|.+|+|||||...+...
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4667899999999999999998874
No 460
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=89.49 E-value=0.19 Score=49.73 Aligned_cols=24 Identities=17% Similarity=-0.011 Sum_probs=21.9
Q ss_pred CcEEEEEEcCCCChHHHHHHHHHc
Q 003890 207 GLSVVAILNGSGFDKTAFAADTYN 230 (788)
Q Consensus 207 ~~~vi~I~G~gGiGKTtLa~~v~~ 230 (788)
...+|+|.|+.|+||||+++.+..
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 467899999999999999999987
No 461
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=89.47 E-value=0.18 Score=48.17 Aligned_cols=24 Identities=25% Similarity=0.336 Sum_probs=21.3
Q ss_pred cEEEEEEcCCCChHHHHHHHHHcc
Q 003890 208 LSVVAILNGSGFDKTAFAADTYNN 231 (788)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~~ 231 (788)
.-.|+|+|..|+|||||.+.+...
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 457899999999999999999875
No 462
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=89.30 E-value=0.19 Score=51.64 Aligned_cols=24 Identities=8% Similarity=0.128 Sum_probs=21.6
Q ss_pred CcEEEEEEcCCCChHHHHHHHHHc
Q 003890 207 GLSVVAILNGSGFDKTAFAADTYN 230 (788)
Q Consensus 207 ~~~vi~I~G~gGiGKTtLa~~v~~ 230 (788)
.-.+++|+|..|.|||||++.+..
T Consensus 125 ~Ge~vaIvGpsGsGKSTLl~lL~g 148 (305)
T 2v9p_A 125 KKNCLAFIGPPNTGKSMLCNSLIH 148 (305)
T ss_dssp TCSEEEEECSSSSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhh
Confidence 356899999999999999999887
No 463
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=89.30 E-value=0.17 Score=54.38 Aligned_cols=36 Identities=25% Similarity=0.240 Sum_probs=27.0
Q ss_pred HHHHHHHhcCCCCcEEEEEEcCCCChHHHHHHHHHc
Q 003890 195 EELFDLLIEGPSGLSVVAILNGSGFDKTAFAADTYN 230 (788)
Q Consensus 195 ~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 230 (788)
..+.+.|........+++|+|..|+|||||.+.+..
T Consensus 56 ~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~G 91 (413)
T 1tq4_A 56 SAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRG 91 (413)
T ss_dssp HHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHT
T ss_pred hhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhC
Confidence 344444443323467999999999999999999987
No 464
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=89.29 E-value=0.17 Score=49.84 Aligned_cols=24 Identities=21% Similarity=0.091 Sum_probs=22.0
Q ss_pred CcEEEEEEcCCCChHHHHHHHHHc
Q 003890 207 GLSVVAILNGSGFDKTAFAADTYN 230 (788)
Q Consensus 207 ~~~vi~I~G~gGiGKTtLa~~v~~ 230 (788)
.-.+|+|.|..|+||||+++.+..
T Consensus 19 ~g~~i~i~G~~GsGKSTl~~~L~~ 42 (230)
T 2vp4_A 19 QPFTVLIEGNIGSGKTTYLNHFEK 42 (230)
T ss_dssp CCEEEEEECSTTSCHHHHHHTTGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHh
Confidence 357999999999999999999987
No 465
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=89.25 E-value=0.11 Score=53.34 Aligned_cols=23 Identities=9% Similarity=0.173 Sum_probs=18.3
Q ss_pred cEEEEEEcCCCChHHHHHHHHHc
Q 003890 208 LSVVAILNGSGFDKTAFAADTYN 230 (788)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~ 230 (788)
..+|+|.|..|+||||+|+.+.+
T Consensus 5 ~~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 5 HPIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp SCEEEEESCC---CCTHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 56899999999999999999887
No 466
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=89.22 E-value=1.4 Score=42.32 Aligned_cols=24 Identities=33% Similarity=0.357 Sum_probs=21.3
Q ss_pred cEEEEEEcCCCChHHHHHHHHHcc
Q 003890 208 LSVVAILNGSGFDKTAFAADTYNN 231 (788)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~~ 231 (788)
.--|.|+|.+|+|||||...+...
T Consensus 25 ~~ki~vvG~~~~GKSsLi~~l~~~ 48 (217)
T 2f7s_A 25 LIKLLALGDSGVGKTTFLYRYTDN 48 (217)
T ss_dssp EEEEEEESCTTSSHHHHHHHHHCS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 457889999999999999998875
No 467
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=89.10 E-value=0.21 Score=51.07 Aligned_cols=23 Identities=17% Similarity=0.212 Sum_probs=21.5
Q ss_pred cEEEEEEcCCCChHHHHHHHHHc
Q 003890 208 LSVVAILNGSGFDKTAFAADTYN 230 (788)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~ 230 (788)
.++|.|+|+.|+||||||..+..
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~ 32 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRK 32 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECCCccCHHHHHHHHHH
Confidence 57899999999999999999987
No 468
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=89.07 E-value=0.31 Score=56.83 Aligned_cols=93 Identities=17% Similarity=0.179 Sum_probs=57.4
Q ss_pred CCcccchhcHHHHHHHHhcC-----------CCCcEEEEEEcCCCChHHHHHHHHHcccCcccccceeEEEEeCCCCChH
Q 003890 185 LDISEFERGREELFDLLIEG-----------PSGLSVVAILNGSGFDKTAFAADTYNNNHIKFYFDCLAWVRVSIAYDSG 253 (788)
Q Consensus 185 ~~~vGr~~~~~~i~~~L~~~-----------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~ 253 (788)
.++.|.++.++++.+.+... -...+-|-++|++|.|||.+|+++.+ +.... ++.++. .
T Consensus 477 ~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~--e~~~~-----f~~v~~----~ 545 (806)
T 3cf2_A 477 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIAN--ECQAN-----FISIKG----P 545 (806)
T ss_dssp TTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHH--TTTCE-----EEECCH----H
T ss_pred HHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHH--HhCCc-----eEEecc----c
Confidence 77888988888887766432 01234567999999999999999999 33332 233321 1
Q ss_pred HHHHHHHHHcCCCCCCcccccCCHHHHHHHHHHHhcCCcEEEEEeCCC
Q 003890 254 KILDDIIKSVMPPSRVSVIIGEDYKLKKTILRDYLTNKKYFIVLDDVF 301 (788)
Q Consensus 254 ~~~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVLDdvw 301 (788)
+++.... ..+...+.......-+..+..|++|++.
T Consensus 546 ----~l~s~~v---------Gese~~vr~lF~~Ar~~~P~IifiDEiD 580 (806)
T 3cf2_A 546 ----ELLTMWF---------GESEANVREIFDKARQAAPCVLFFDELD 580 (806)
T ss_dssp ----HHHTTTC---------SSCHHHHHHHHHHHHTTCSEEEECSCGG
T ss_pred ----hhhcccc---------chHHHHHHHHHHHHHHcCCceeechhhh
Confidence 2222222 1223333333333335678999999984
No 469
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=89.04 E-value=0.99 Score=49.36 Aligned_cols=51 Identities=16% Similarity=0.217 Sum_probs=33.4
Q ss_pred CcEEEEEEcCCCChHHHHHHHHHcccCcccccceeEEEEeCCCCChHHHHHHHH
Q 003890 207 GLSVVAILNGSGFDKTAFAADTYNNNHIKFYFDCLAWVRVSIAYDSGKILDDII 260 (788)
Q Consensus 207 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il 260 (788)
.-.++.|.|.+|+||||||..+..+...... ..++|++.. -+...+...++
T Consensus 202 ~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g-~~Vl~~s~E--~s~~~l~~r~~ 252 (454)
T 2r6a_A 202 RSDLIIVAARPSVGKTAFALNIAQNVATKTN-ENVAIFSLE--MSAQQLVMRML 252 (454)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHHHHHHHHSS-CCEEEEESS--SCHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHhCC-CcEEEEECC--CCHHHHHHHHH
Confidence 3468999999999999999998874322111 146776543 34455555554
No 470
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=89.03 E-value=0.35 Score=50.61 Aligned_cols=35 Identities=17% Similarity=0.164 Sum_probs=26.6
Q ss_pred HHHHHHhcCCCCcEEEEEEcCCCChHHHHHHHHHc
Q 003890 196 ELFDLLIEGPSGLSVVAILNGSGFDKTAFAADTYN 230 (788)
Q Consensus 196 ~i~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 230 (788)
.+++-+...-....+++|+|.+|+|||||.+.+..
T Consensus 43 ~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g 77 (337)
T 2qm8_A 43 DLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGS 77 (337)
T ss_dssp HHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHH
T ss_pred HHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 34444443333578999999999999999999875
No 471
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=89.02 E-value=0.24 Score=46.52 Aligned_cols=24 Identities=8% Similarity=0.120 Sum_probs=21.4
Q ss_pred cEEEEEEcCCCChHHHHHHHHHcc
Q 003890 208 LSVVAILNGSGFDKTAFAADTYNN 231 (788)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~~ 231 (788)
...|+++|.+|+|||||...+...
T Consensus 7 ~~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 7 SYEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 457899999999999999999874
No 472
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=88.99 E-value=0.23 Score=46.53 Aligned_cols=26 Identities=12% Similarity=0.041 Sum_probs=22.5
Q ss_pred CCcEEEEEEcCCCChHHHHHHHHHcc
Q 003890 206 SGLSVVAILNGSGFDKTAFAADTYNN 231 (788)
Q Consensus 206 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 231 (788)
.....|.|+|.+|+|||||...+...
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCS
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcC
Confidence 34677899999999999999999874
No 473
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Probab=88.94 E-value=0.42 Score=52.14 Aligned_cols=105 Identities=12% Similarity=0.124 Sum_probs=57.2
Q ss_pred HHHHHHhcCCCCcEEEEEEcCCCChHHHHH-HHHHcccCc----ccccc-eeEEEEeCCCCC-hHHHHHHHHHHcCCCCC
Q 003890 196 ELFDLLIEGPSGLSVVAILNGSGFDKTAFA-ADTYNNNHI----KFYFD-CLAWVRVSIAYD-SGKILDDIIKSVMPPSR 268 (788)
Q Consensus 196 ~i~~~L~~~~~~~~vi~I~G~gGiGKTtLa-~~v~~~~~~----~~~F~-~~~wv~vs~~~~-~~~~~~~il~~l~~~~~ 268 (788)
++++.|..=. .-..++|+|..|+|||+|| ..+.+.... ..+-+ .++++-+++... +.++.+.+...=.....
T Consensus 151 raID~l~Pig-rGQR~~I~g~~g~GKT~Lal~~I~~q~~~~~~~~~~~d~~~V~~~IGeR~~Ev~~~~~~~~~~g~m~~t 229 (510)
T 2ck3_A 151 KAVDSLVPIG-RGQRELIIGDRQTGKTSIAIDTIINQKRFNDGTDEKKKLYCIYVAIGQKRSTVAQLVKRLTDADAMKYT 229 (510)
T ss_dssp HHHHHHSCCB-TTCBCEEEESTTSSHHHHHHHHHHHTHHHHTSCCTTTCCEEEEEEESCCHHHHHHHHHHHHHTTCGGGE
T ss_pred eeeccccccc-cCCEEEEecCCCCCchHHHHHHHHHHHhhccccccCCCeEEEEEECCCCcHHHHHHHHHHHhcCCcccc
Confidence 4566665422 2346789999999999995 566663211 01234 377888888754 55666666542111100
Q ss_pred Cc--ccccCC-HH-----HHHHHHHHHh--cCCcEEEEEeCCC
Q 003890 269 VS--VIIGED-YK-----LKKTILRDYL--TNKKYFIVLDDVF 301 (788)
Q Consensus 269 ~~--~~~~~~-~~-----~~~~~l~~~l--~~kr~LlVLDdvw 301 (788)
.- ...+.. .. .....+.+++ +|+.+|+++||+-
T Consensus 230 vvV~atad~p~~~r~~a~~~a~tiAEyfrd~G~dVLli~Dslt 272 (510)
T 2ck3_A 230 IVVSATASDAAPLQYLAPYSGCSMGEYFRDNGKHALIIYDDLS 272 (510)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEETHH
T ss_pred eEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEEcCHH
Confidence 00 000111 11 1112344444 5799999999984
No 474
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=88.91 E-value=0.24 Score=50.80 Aligned_cols=23 Identities=22% Similarity=0.049 Sum_probs=21.2
Q ss_pred cEEEEEEcCCCChHHHHHHHHHc
Q 003890 208 LSVVAILNGSGFDKTAFAADTYN 230 (788)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~ 230 (788)
..+++|+|.+|+||||++..++.
T Consensus 98 ~~~i~i~g~~G~GKTT~~~~la~ 120 (295)
T 1ls1_A 98 RNLWFLVGLQGSGKTTTAAKLAL 120 (295)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 57999999999999999999887
No 475
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=88.88 E-value=1.7 Score=51.77 Aligned_cols=124 Identities=16% Similarity=0.062 Sum_probs=63.6
Q ss_pred cEEEEEEcCCCChHHHHHHHHHcccCcccccc---eeEEEEeCCCC-------Ch-----------HHHHHHHHHHcCCC
Q 003890 208 LSVVAILNGSGFDKTAFAADTYNNNHIKFYFD---CLAWVRVSIAY-------DS-----------GKILDDIIKSVMPP 266 (788)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~---~~~wv~vs~~~-------~~-----------~~~~~~il~~l~~~ 266 (788)
-.+++|+|..|+|||||.+.+..- ++.+ |+ ..-.+.+.+.. ++ .+-..++++.++..
T Consensus 461 Ge~v~LiGpNGsGKSTLLk~LagG-~i~g-~~~~~~~~~~~v~q~~~~~~~~ltv~e~l~~~~~~~~~~v~~~L~~lgL~ 538 (986)
T 2iw3_A 461 ARRYGICGPNGCGKSTLMRAIANG-QVDG-FPTQEECRTVYVEHDIDGTHSDTSVLDFVFESGVGTKEAIKDKLIEFGFT 538 (986)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHT-CSTT-CCCTTTSCEEETTCCCCCCCTTSBHHHHHHTTCSSCHHHHHHHHHHTTCC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC-CcCC-CccccceeEEEEcccccccccCCcHHHHHHHhhcCHHHHHHHHHHHcCCC
Confidence 358999999999999999999841 1211 11 00112233221 11 12234455555542
Q ss_pred CC--CcccccCCH-HHHHHHHHHHhcCCcEEEEEeCCCC--ChhhHHHHhhhcCCCCCCcEEEEecCChHHHhh
Q 003890 267 SR--VSVIIGEDY-KLKKTILRDYLTNKKYFIVLDDVFN--DSDIWDDLEQVLPDNQNGSRVLITVTDLDLLES 335 (788)
Q Consensus 267 ~~--~~~~~~~~~-~~~~~~l~~~l~~kr~LlVLDdvw~--~~~~~~~l~~~l~~~~~gskIivTTR~~~v~~~ 335 (788)
.. .......+. +...-.|.+.|-.+.=+|+||.--. +...-..+...+.. .|.-||++|.+...+..
T Consensus 539 ~~~~~~~~~~LSGGqkQRvaLArAL~~~P~lLLLDEPTs~LD~~~~~~l~~~L~~--~g~tvIivSHdl~~l~~ 610 (986)
T 2iw3_A 539 DEMIAMPISALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNT--CGITSITISHDSVFLDN 610 (986)
T ss_dssp HHHHHSBGGGCCHHHHHHHHHHHHHHTTCSEEEEESTTTTCCHHHHHHHHHHHHH--SCSEEEEECSCHHHHHH
T ss_pred hhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHh--CCCEEEEEECCHHHHHH
Confidence 10 001111222 2222345555556677899998752 22222333333333 36678888888666544
No 476
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=88.87 E-value=0.17 Score=52.05 Aligned_cols=23 Identities=17% Similarity=0.213 Sum_probs=21.1
Q ss_pred cEEEEEEcCCCChHHHHHHHHHc
Q 003890 208 LSVVAILNGSGFDKTAFAADTYN 230 (788)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~ 230 (788)
-.+++|+|..|+|||||++.+..
T Consensus 80 Ge~vaivG~sGsGKSTLl~ll~g 102 (306)
T 3nh6_A 80 GQTLALVGPSGAGKSTILRLLFR 102 (306)
T ss_dssp TCEEEEESSSCHHHHHHHHHHTT
T ss_pred CCEEEEECCCCchHHHHHHHHHc
Confidence 46899999999999999999876
No 477
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=88.86 E-value=0.26 Score=45.23 Aligned_cols=24 Identities=21% Similarity=0.163 Sum_probs=20.9
Q ss_pred cEEEEEEcCCCChHHHHHHHHHcc
Q 003890 208 LSVVAILNGSGFDKTAFAADTYNN 231 (788)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~~ 231 (788)
.-.|.|+|.+|+|||||...+...
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 6 SFKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 456889999999999999998865
No 478
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=88.79 E-value=0.2 Score=50.62 Aligned_cols=21 Identities=14% Similarity=0.431 Sum_probs=19.6
Q ss_pred EEEEEcCCCChHHHHHHHHHc
Q 003890 210 VVAILNGSGFDKTAFAADTYN 230 (788)
Q Consensus 210 vi~I~G~gGiGKTtLa~~v~~ 230 (788)
.++|+|..|+|||||.+.++.
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g 24 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFK 24 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 589999999999999999886
No 479
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=88.70 E-value=0.19 Score=51.12 Aligned_cols=23 Identities=22% Similarity=0.185 Sum_probs=20.7
Q ss_pred cEEEEEEcCCCChHHHHHHHHHc
Q 003890 208 LSVVAILNGSGFDKTAFAADTYN 230 (788)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~ 230 (788)
-.++.|+|.+|+|||||+..+..
T Consensus 30 G~i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 30 GTVGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 46899999999999999998875
No 480
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=88.66 E-value=0.24 Score=45.09 Aligned_cols=22 Identities=18% Similarity=0.388 Sum_probs=19.8
Q ss_pred EEEEEcCCCChHHHHHHHHHcc
Q 003890 210 VVAILNGSGFDKTAFAADTYNN 231 (788)
Q Consensus 210 vi~I~G~gGiGKTtLa~~v~~~ 231 (788)
.|.++|.+|+|||||+..+...
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999999865
No 481
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=88.63 E-value=1.2 Score=48.34 Aligned_cols=52 Identities=19% Similarity=0.164 Sum_probs=33.9
Q ss_pred CcEEEEEEcCCCChHHHHHHHHHcccCcccccceeEEEEeCCCCChHHHHHHHHHH
Q 003890 207 GLSVVAILNGSGFDKTAFAADTYNNNHIKFYFDCLAWVRVSIAYDSGKILDDIIKS 262 (788)
Q Consensus 207 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~~ 262 (788)
.-.++.|.|.+|+||||+|..++.+...++ ..++|++. +-+..++...++..
T Consensus 196 ~G~liiIaG~pG~GKTtlal~ia~~~a~~g--~~vl~fSl--Ems~~ql~~R~~~~ 247 (444)
T 3bgw_A 196 RRNFVLIAARPSMGKTAFALKQAKNMSDND--DVVNLHSL--EMGKKENIKRLIVT 247 (444)
T ss_dssp SSCEEEEEECSSSSHHHHHHHHHHHHHHTT--CEEEEECS--SSCTTHHHHHHHHH
T ss_pred CCcEEEEEeCCCCChHHHHHHHHHHHHHcC--CEEEEEEC--CCCHHHHHHHHHHH
Confidence 356889999999999999988877432221 23666544 33445555555544
No 482
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=88.58 E-value=0.38 Score=50.49 Aligned_cols=35 Identities=14% Similarity=0.144 Sum_probs=26.1
Q ss_pred HHHHHHhcCCCCcEEEEEEcCCCChHHHHHHHHHc
Q 003890 196 ELFDLLIEGPSGLSVVAILNGSGFDKTAFAADTYN 230 (788)
Q Consensus 196 ~i~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 230 (788)
.+.+-+........+|+|+|.+|+|||||+..+..
T Consensus 44 ~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~ 78 (341)
T 2p67_A 44 QLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGM 78 (341)
T ss_dssp HHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHH
T ss_pred HHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHH
Confidence 34444433334578999999999999999998865
No 483
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=88.55 E-value=0.23 Score=45.86 Aligned_cols=24 Identities=29% Similarity=0.324 Sum_probs=21.0
Q ss_pred cEEEEEEcCCCChHHHHHHHHHcc
Q 003890 208 LSVVAILNGSGFDKTAFAADTYNN 231 (788)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~~ 231 (788)
.--|+|+|.+|+|||||...+...
T Consensus 4 ~~ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 4 LYRVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEEEECCCCccHHHHHHHHhcC
Confidence 456899999999999999998864
No 484
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=88.47 E-value=0.22 Score=45.61 Aligned_cols=24 Identities=4% Similarity=0.123 Sum_probs=20.9
Q ss_pred cEEEEEEcCCCChHHHHHHHHHcc
Q 003890 208 LSVVAILNGSGFDKTAFAADTYNN 231 (788)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~~ 231 (788)
.--|.|+|.+|+|||||...+...
T Consensus 5 ~~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 5 AIKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEEECcCCCCHHHHHHHHHcC
Confidence 456789999999999999998864
No 485
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=88.44 E-value=0.24 Score=53.65 Aligned_cols=23 Identities=26% Similarity=0.225 Sum_probs=20.8
Q ss_pred cEEEEEEcCCCChHHHHHHHHHc
Q 003890 208 LSVVAILNGSGFDKTAFAADTYN 230 (788)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~ 230 (788)
..+|+|+|.+|+||||++..+..
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~ 121 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLAR 121 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 56999999999999999988876
No 486
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=88.37 E-value=0.22 Score=51.10 Aligned_cols=51 Identities=16% Similarity=0.204 Sum_probs=32.4
Q ss_pred cEEEEEEcCCCChHHHHHHHHHcccCcccccc-eeEEEEeCCCCChHHHHHHHHHH
Q 003890 208 LSVVAILNGSGFDKTAFAADTYNNNHIKFYFD-CLAWVRVSIAYDSGKILDDIIKS 262 (788)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~-~~~wv~vs~~~~~~~~~~~il~~ 262 (788)
-.+++|+|.+|+|||||++.+....... -. .++|+... .+..++.+.+...
T Consensus 35 G~~~~i~G~~G~GKTTl~~~ia~~~~~~--~G~~v~~~~~e--~~~~~~~~r~~~~ 86 (296)
T 1cr0_A 35 GEVIMVTSGSGMGKSTFVRQQALQWGTA--MGKKVGLAMLE--ESVEETAEDLIGL 86 (296)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHHHHHHT--SCCCEEEEESS--SCHHHHHHHHHHH
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHH--cCCeEEEEeCc--CCHHHHHHHHHHH
Confidence 4589999999999999999988742211 12 35565443 2344454444443
No 487
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=88.30 E-value=0.32 Score=44.61 Aligned_cols=23 Identities=17% Similarity=0.283 Sum_probs=20.3
Q ss_pred EEEEEEcCCCChHHHHHHHHHcc
Q 003890 209 SVVAILNGSGFDKTAFAADTYNN 231 (788)
Q Consensus 209 ~vi~I~G~gGiGKTtLa~~v~~~ 231 (788)
--|.|+|.+|+|||||...+...
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 45789999999999999999874
No 488
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=88.29 E-value=0.55 Score=45.47 Aligned_cols=24 Identities=13% Similarity=-0.036 Sum_probs=21.4
Q ss_pred cEEEEEEcCCCChHHHHHHHHHcc
Q 003890 208 LSVVAILNGSGFDKTAFAADTYNN 231 (788)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~~ 231 (788)
-..|.|.|+.|+||||+++.+.+.
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~~ 29 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAER 29 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHH
Confidence 468899999999999999999873
No 489
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=88.22 E-value=0.23 Score=46.82 Aligned_cols=23 Identities=17% Similarity=0.343 Sum_probs=20.4
Q ss_pred EEEEEEcCCCChHHHHHHHHHcc
Q 003890 209 SVVAILNGSGFDKTAFAADTYNN 231 (788)
Q Consensus 209 ~vi~I~G~gGiGKTtLa~~v~~~ 231 (788)
-.|.++|.+|+|||||+..+...
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 46789999999999999999865
No 490
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=88.20 E-value=0.29 Score=44.69 Aligned_cols=24 Identities=21% Similarity=0.346 Sum_probs=20.8
Q ss_pred cEEEEEEcCCCChHHHHHHHHHcc
Q 003890 208 LSVVAILNGSGFDKTAFAADTYNN 231 (788)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~~ 231 (788)
..-|+++|.+|+|||||...+...
T Consensus 4 ~~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 4 LHKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHhC
Confidence 346889999999999999998865
No 491
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=88.19 E-value=0.28 Score=50.63 Aligned_cols=25 Identities=20% Similarity=0.367 Sum_probs=21.4
Q ss_pred CCcEEEEEEcCCCChHHHHHHHHHc
Q 003890 206 SGLSVVAILNGSGFDKTAFAADTYN 230 (788)
Q Consensus 206 ~~~~vi~I~G~gGiGKTtLa~~v~~ 230 (788)
...++|+|+|-||+||||+|..+..
T Consensus 39 ~~~~vI~v~~KGGvGKTT~a~nLA~ 63 (307)
T 3end_A 39 TGAKVFAVYGKGGIGKSTTSSNLSA 63 (307)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCceEEEEECCCCccHHHHHHHHHH
Confidence 3578999999999999999887776
No 492
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=88.11 E-value=0.27 Score=48.73 Aligned_cols=24 Identities=13% Similarity=0.077 Sum_probs=21.5
Q ss_pred cEEEEEEcCCCChHHHHHHHHHcc
Q 003890 208 LSVVAILNGSGFDKTAFAADTYNN 231 (788)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~~ 231 (788)
...|.|.|..|+||||+++.+.+.
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~ 25 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKT 25 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHH
Confidence 467999999999999999999883
No 493
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=88.11 E-value=0.3 Score=44.67 Aligned_cols=23 Identities=17% Similarity=0.319 Sum_probs=20.1
Q ss_pred EEEEEEcCCCChHHHHHHHHHcc
Q 003890 209 SVVAILNGSGFDKTAFAADTYNN 231 (788)
Q Consensus 209 ~vi~I~G~gGiGKTtLa~~v~~~ 231 (788)
--|+|+|.+|+|||||...+.+.
T Consensus 4 ~ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 4 YKLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 35789999999999999998864
No 494
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=87.98 E-value=0.22 Score=51.75 Aligned_cols=25 Identities=20% Similarity=0.195 Sum_probs=22.6
Q ss_pred CcEEEEEEcCCCChHHHHHHHHHcc
Q 003890 207 GLSVVAILNGSGFDKTAFAADTYNN 231 (788)
Q Consensus 207 ~~~vi~I~G~gGiGKTtLa~~v~~~ 231 (788)
.+.+++|+|+.|.|||||.+.+...
T Consensus 3 ~i~v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 3 PIAVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp CEEEEEEEESSSSSCHHHHHHHHHS
T ss_pred cccEEEEEecCCCCHHHHHHHHHhh
Confidence 4789999999999999999999863
No 495
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=87.95 E-value=1.1 Score=50.67 Aligned_cols=23 Identities=26% Similarity=0.239 Sum_probs=21.0
Q ss_pred cEEEEEEcCCCChHHHHHHHHHc
Q 003890 208 LSVVAILNGSGFDKTAFAADTYN 230 (788)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~ 230 (788)
-.+++|+|..|.|||||++.+..
T Consensus 369 Ge~~~ivG~sGsGKSTll~~l~g 391 (587)
T 3qf4_A 369 GSLVAVLGETGSGKSTLMNLIPR 391 (587)
T ss_dssp TCEEEEECSSSSSHHHHHHTTTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 46899999999999999999876
No 496
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=87.86 E-value=0.25 Score=45.93 Aligned_cols=23 Identities=13% Similarity=0.066 Sum_probs=20.5
Q ss_pred EEEEEEcCCCChHHHHHHHHHcc
Q 003890 209 SVVAILNGSGFDKTAFAADTYNN 231 (788)
Q Consensus 209 ~vi~I~G~gGiGKTtLa~~v~~~ 231 (788)
..|+|+|.+|+|||||.+.+...
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46889999999999999999874
No 497
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=87.85 E-value=0.27 Score=51.75 Aligned_cols=23 Identities=13% Similarity=0.147 Sum_probs=21.1
Q ss_pred cEEEEEEcCCCChHHHHHHHHHc
Q 003890 208 LSVVAILNGSGFDKTAFAADTYN 230 (788)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~ 230 (788)
-.+++|+|..|+|||||.+.+..
T Consensus 54 Gei~~IiGpnGaGKSTLlr~i~G 76 (366)
T 3tui_C 54 GQIYGVIGASGAGKSTLIRCVNL 76 (366)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHT
T ss_pred CCEEEEEcCCCchHHHHHHHHhc
Confidence 46899999999999999999886
No 498
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=87.74 E-value=0.29 Score=49.92 Aligned_cols=23 Identities=17% Similarity=0.261 Sum_probs=20.5
Q ss_pred cEEEEEEcCCCChHHHHHHHHHc
Q 003890 208 LSVVAILNGSGFDKTAFAADTYN 230 (788)
Q Consensus 208 ~~vi~I~G~gGiGKTtLa~~v~~ 230 (788)
.++|+|.|-||+||||+|..+..
T Consensus 2 MkvIavs~KGGvGKTT~a~nLA~ 24 (289)
T 2afh_E 2 MRQCAIYGKGGIGKSTTTQNLVA 24 (289)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHH
T ss_pred ceEEEEeCCCcCcHHHHHHHHHH
Confidence 57899999999999999988776
No 499
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=87.67 E-value=0.33 Score=44.22 Aligned_cols=23 Identities=22% Similarity=0.339 Sum_probs=20.0
Q ss_pred EEEEEEcCCCChHHHHHHHHHcc
Q 003890 209 SVVAILNGSGFDKTAFAADTYNN 231 (788)
Q Consensus 209 ~vi~I~G~gGiGKTtLa~~v~~~ 231 (788)
--|+|+|.+|+|||||...+...
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 35889999999999999888764
No 500
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=87.67 E-value=0.31 Score=46.05 Aligned_cols=25 Identities=12% Similarity=-0.007 Sum_probs=21.9
Q ss_pred CcEEEEEEcCCCChHHHHHHHHHcc
Q 003890 207 GLSVVAILNGSGFDKTAFAADTYNN 231 (788)
Q Consensus 207 ~~~vi~I~G~gGiGKTtLa~~v~~~ 231 (788)
....|.|+|.+|+|||||...+...
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3568899999999999999998874
Done!