BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 003891
(788 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2VSN|A Chain A, Structure And Topological Arrangement Of An O-Glcnac
Transferase Homolog: Insight Into Molecular Control Of
Intracellular Glycosylation
pdb|2VSN|B Chain B, Structure And Topological Arrangement Of An O-Glcnac
Transferase Homolog: Insight Into Molecular Control Of
Intracellular Glycosylation
Length = 568
Score = 124 bits (311), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 99/355 (27%), Positives = 153/355 (43%), Gaps = 16/355 (4%)
Query: 354 PLVIGYVSPDYFTHSVSYFIEAPL-VYHDYQNYXXXXXXXXXXXXXXTIRFREKVMKKGG 412
PL +G+VS + H A Q T+R R + +
Sbjct: 205 PLRVGFVSNGFGAHPTGLLTVALFEALQRRQPDLQMHLFATSGDDGSTLRTR---LAQAS 261
Query: 413 IWRDIYGIDEKKVAAMVREDKIDILVELTGHTANNKLGMMACQPAPVQVTWIGYPNTTGL 472
D+ + A +R ID+L +L G + + A +PAPVQV W+ YP T+G
Sbjct: 262 TLHDVTALGHLATAKHIRHHGIDLLFDLAGWGGGGRPEVFALRPAPVQVNWLAYPGTSGA 321
Query: 473 PTIDYRITDSLADPPETKQKHVEELIRLPECFLCYTPSPEAGPVCPTPALTN-GF----I 527
P +DY + D+ A PP + + E ++RL F PS + V P+ T G +
Sbjct: 322 PWMDYVLGDAFALPPALEPFYSEHVLRLQGAF---QPSDTSRVVAEPPSRTQCGLPEQGV 378
Query: 528 TFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLR 587
FNN K+ P+ + +L VP+S L + P D+ R + G+++ R
Sbjct: 379 VLCCFNNSYKLNPQSMARMLAVLREVPDSVLWLLSGPGEADA---RLRAFAHAQGVDAQR 435
Query: 588 VDLLPLILLNHDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVS 647
+ +P L + ++ Y D+ LDT PY TT ++L+ G P +T G A V S
Sbjct: 436 LVFMP-KLPHPQYLARYRHADLFLDTHPYNAHTTASDALWTGCPVLTTPGETFAARVAGS 494
Query: 648 LLTKVGLKHLIAKNEDEYVQLALQLASDVTALANLRMSLRDLMSKSPVCDGQNFA 702
L +GL + ++ +V A+ LASD AL L + L S V FA
Sbjct: 495 LNHHLGLDEMNVADDAAFVAKAVALASDPAALTALHARVDVLRRASGVFHMDGFA 549
>pdb|2VSY|A Chain A, Xanthomonas Campestris Putative Ogt (Xcc0866),
Apostructure
pdb|2VSY|B Chain B, Xanthomonas Campestris Putative Ogt (Xcc0866),
Apostructure
pdb|2JLB|A Chain A, Xanthomonas Campestris Putative Ogt (Xcc0866), Complex
With Udp-Glcnac Phosphonate Analogue
pdb|2JLB|B Chain B, Xanthomonas Campestris Putative Ogt (Xcc0866), Complex
With Udp-Glcnac Phosphonate Analogue
pdb|2XGM|A Chain A, Substrate And Product Analogues As Human O-Glcnac
Transferase Inhibitors.
pdb|2XGM|B Chain B, Substrate And Product Analogues As Human O-Glcnac
Transferase Inhibitors.
pdb|2XGO|A Chain A, Xcogt In Complex With Udp-S-Glcnac
pdb|2XGO|B Chain B, Xcogt In Complex With Udp-S-Glcnac
pdb|2XGS|A Chain A, Xcogt In Complex With C-Udp
pdb|2XGS|B Chain B, Xcogt In Complex With C-Udp
Length = 568
Score = 124 bits (310), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 99/355 (27%), Positives = 153/355 (43%), Gaps = 16/355 (4%)
Query: 354 PLVIGYVSPDYFTHSVSYFIEAPL-VYHDYQNYXXXXXXXXXXXXXXTIRFREKVMKKGG 412
PL +G+VS + H A Q T+R R + +
Sbjct: 205 PLRVGFVSNGFGAHPTGLLTVALFEALQRRQPDLQMHLFATSGDDGSTLRTR---LAQAS 261
Query: 413 IWRDIYGIDEKKVAAMVREDKIDILVELTGHTANNKLGMMACQPAPVQVTWIGYPNTTGL 472
D+ + A +R ID+L +L G + + A +PAPVQV W+ YP T+G
Sbjct: 262 TLHDVTALGHLATAKHIRHHGIDLLFDLRGWGGGGRPEVFALRPAPVQVNWLAYPGTSGA 321
Query: 473 PTIDYRITDSLADPPETKQKHVEELIRLPECFLCYTPSPEAGPVCPTPALTN-GF----I 527
P +DY + D+ A PP + + E ++RL F PS + V P+ T G +
Sbjct: 322 PWMDYVLGDAFALPPALEPFYSEHVLRLQGAF---QPSDTSRVVAEPPSRTQCGLPEQGV 378
Query: 528 TFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLR 587
FNN K+ P+ + +L VP+S L + P D+ R + G+++ R
Sbjct: 379 VLCCFNNSYKLNPQSMARMLAVLREVPDSVLWLLSGPGEADA---RLRAFAHAQGVDAQR 435
Query: 588 VDLLPLILLNHDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVS 647
+ +P L + ++ Y D+ LDT PY TT ++L+ G P +T G A V S
Sbjct: 436 LVFMP-KLPHPQYLARYRHADLFLDTHPYNAHTTASDALWTGCPVLTTPGETFAARVAGS 494
Query: 648 LLTKVGLKHLIAKNEDEYVQLALQLASDVTALANLRMSLRDLMSKSPVCDGQNFA 702
L +GL + ++ +V A+ LASD AL L + L S V FA
Sbjct: 495 LNHHLGLDEMNVADDAAFVAKAVALASDPAALTALHARVDVLRRASGVFHMDGFA 549
>pdb|3PE3|A Chain A, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE3|B Chain B, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE3|C Chain C, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE3|D Chain D, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE4|A Chain A, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE4|C Chain C, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3TAX|A Chain A, A Neutral Diphosphate Mimic Crosslinks The Active Site Of
Human O- Glcnac Transferase
pdb|3TAX|C Chain C, A Neutral Diphosphate Mimic Crosslinks The Active Site Of
Human O- Glcnac Transferase
pdb|4AY5|A Chain A, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY5|B Chain B, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY5|C Chain C, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY5|D Chain D, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY6|A Chain A, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4AY6|B Chain B, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4AY6|C Chain C, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4AY6|D Chain D, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4GYW|A Chain A, Crystal Structure Of Human O-Glcnac Transferase In Complex
With Udp And A Glycopeptide
pdb|4GYW|C Chain C, Crystal Structure Of Human O-Glcnac Transferase In Complex
With Udp And A Glycopeptide
pdb|4GYY|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac And A Peptide Substrate
pdb|4GYY|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac And A Peptide Substrate
pdb|4GZ3|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With Udp
And A Thioglycopeptide
pdb|4GZ3|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With Udp
And A Thioglycopeptide
pdb|4GZ5|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ5|B Chain B, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ5|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ5|D Chain D, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ6|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
pdb|4GZ6|B Chain B, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
pdb|4GZ6|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
pdb|4GZ6|D Chain D, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
Length = 723
Score = 124 bits (310), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 101/415 (24%), Positives = 175/415 (42%), Gaps = 79/415 (19%)
Query: 133 AIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYEL 192
A +L +L + +G+I + V Y+KAL +A A NL + K A++ Y+
Sbjct: 9 ADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKE 68
Query: 193 AFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGXXX 252
A +P A+A +N+G K+ ++ A++CY A+ I
Sbjct: 69 AIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQI---------------------- 106
Query: 253 XXXXXXXXXXXXNPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNA------- 305
NP +A+A++NL +++D+G+I AI +Y LK+ PD +A
Sbjct: 107 ------------NPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHC 154
Query: 306 -------------------------GQNRLLAMNY-------INEGHDDKLFEAHRDWGK 333
+NRL +++ ++ G + E H +
Sbjct: 155 LQIVCDWTDYDERMKKLVSIVADQLEKNRLPSVHPHHSMLYPLSHGFRKAIAERHGNLCL 214
Query: 334 RFMRLYSQ--YTSWDNTKDPERPLVIGYVSPDYFTHSVSYFIEAPLVYHDYQNYXXXXXX 391
+ + + Y + K + L +GYVS D+ H S+ +++ H+ +
Sbjct: 215 DKINVLHKPPYEHPKDLKLSDGRLRVGYVSSDFGNHPTSHLMQSIPGMHNPDKFEVFCYA 274
Query: 392 XXXXXXXXTIRFREKVMKKGGIWRDIYGID-EKKVAAMVREDKIDILVELTGHTANNKLG 450
FR KVM + + D+ I K A + +D I ILV + G+T +
Sbjct: 275 LSPDDGT---NFRVKVMAEANHFIDLSQIPCNGKAADRIHQDGIHILVNMNGYTKGARNE 331
Query: 451 MMACQPAPVQVTWIGYPNTTGLPTIDYRITDSLADPPETKQKHVEELIRLPECFL 505
+ A +PAP+Q W+GYP T+G +DY ITD P E +++ E+L +P F
Sbjct: 332 LFALRPAPIQAMWLGYPGTSGALFMDYIITDQETSPAEVAEQYSEKLAYMPHTFF 386
Score = 107 bits (266), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 67/196 (34%), Positives = 98/196 (50%), Gaps = 4/196 (2%)
Query: 527 ITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESL 586
I + +FN L KI P LQ+WA IL VPNS L + P + ++ + +GL
Sbjct: 524 IVYCNFNQLYKIDPSTLQMWANILKRVPNSVLWLLRFPAVGEPNIQQYA---QNMGLPQN 580
Query: 587 RVDLLPLILLNHDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGV 646
R+ P + +H++ L D+ LDT G TT + L+ G P VTM G A V
Sbjct: 581 RIIFSP-VAPKEEHVRRGQLADVCLDTPLCNGHTTGMDVLWAGTPMVTMPGETLASRVAA 639
Query: 647 SLLTKVGLKHLIAKNEDEYVQLALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALGLE 706
S LT +G LIAKN EY +A++L +D+ L +R + SP+ + + + + LE
Sbjct: 640 SQLTCLGCLELIAKNRQEYEDIAVKLGTDLEYLKKVRGKVWKQRISSPLFNTKQYTMELE 699
Query: 707 STYRNMWHRYCKGDVP 722
Y MW Y G+ P
Sbjct: 700 RLYLQMWEHYAAGNKP 715
Score = 89.7 bits (221), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 49/154 (31%), Positives = 83/154 (53%), Gaps = 7/154 (4%)
Query: 89 PMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGD 148
P +A++ N+ I + +G++E A+ Y + L V P F A +N+A L + +G
Sbjct: 6 PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVL-------QQQGK 58
Query: 149 INQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLG 208
+ + + +YK+A+ + +ADA N+G EM A+ Y A NP A+A +NL
Sbjct: 59 LQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLA 118
Query: 209 VIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLG 242
I+KD N+ +A+ Y+ AL +KP+F + NL
Sbjct: 119 SIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLA 152
Score = 80.5 bits (197), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 47/134 (35%), Positives = 68/134 (50%), Gaps = 7/134 (5%)
Query: 3 VASYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYY 62
V Y KAL P + A LA VL + G Q+ + Y EA++I P +A AY
Sbjct: 29 VRLYRKALEVFPEFAAAHSNLASVL-------QQQGKLQEALMHYKEAIRISPTFADAYS 81
Query: 63 NLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVS 122
N+G E+ AL CY +A P +A+A+ N+ I+K+ G++ AIA Y L +
Sbjct: 82 NMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLK 141
Query: 123 PNFEIAKNNMAIAL 136
P+F A N+A L
Sbjct: 142 PDFPDAYCNLAHCL 155
Score = 80.1 bits (196), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 52/175 (29%), Positives = 86/175 (49%), Gaps = 16/175 (9%)
Query: 27 LTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAAL 86
L +L + GN ++ ++ Y +AL++ P +A A+ NL V + + AL Y++A
Sbjct: 12 LNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR 71
Query: 87 ERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLE 146
P +A+AY NMG K D++ A+ CY R + ++P F A +N+A D
Sbjct: 72 ISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKD-------S 124
Query: 147 GDINQGVAYYKKALYYNWHYADAMYNLG---------VAYGEMLKFDMAIVFYEL 192
G+I + +A Y+ AL + DA NL Y E +K ++IV +L
Sbjct: 125 GNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVADQL 179
Score = 62.4 bits (150), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 59/111 (53%)
Query: 198 PHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGXXXXXXXX 257
P A++ NNL I +++ N+++AV Y+ AL + P F+ + +NL V QG
Sbjct: 6 PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMH 65
Query: 258 XXXXXXXNPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQN 308
+PT+A+AY+N+G ++ + A+ Y + ++I+P +A N
Sbjct: 66 YKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSN 116
Score = 62.4 bits (150), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 42/154 (27%), Positives = 68/154 (44%), Gaps = 7/154 (4%)
Query: 55 PHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIAC 114
P +A + NL + E + A+ Y KA P +A A+ N+ + + +G L+ A+
Sbjct: 6 PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMH 65
Query: 115 YERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLG 174
Y+ + +SP F A +NM G +K D+ + Y +A+ N +ADA NL
Sbjct: 66 YKEAIRISPTFADAYSNM-------GNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLA 118
Query: 175 VAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLG 208
+ + AI Y A P +A NL
Sbjct: 119 SIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLA 152
>pdb|1W3B|A Chain A, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase
Reveals Structural Similarities To Importin Alpha.
pdb|1W3B|B Chain B, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase
Reveals Structural Similarities To Importin Alpha
Length = 388
Score = 120 bits (301), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 82/274 (29%), Positives = 134/274 (48%), Gaps = 14/274 (5%)
Query: 3 VASYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYY 62
V +Y AL +P L V +DLG LK G ++ Y +A++ P++A A+
Sbjct: 121 VQAYVSALQYNPD-------LYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWS 173
Query: 63 NLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVS 122
NLG V++ + A+ +EKA P + +AY N+G + K + A+A Y R L++S
Sbjct: 174 NLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS 233
Query: 123 PNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLK 182
PN + N+A + +G I+ + Y++A+ H+ DA NL A E
Sbjct: 234 PNHAVVHGNLACVYYE-------QGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGS 286
Query: 183 FDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLG 242
A Y A P A++ NNL I +++ N+++AV Y+ AL + P F+ + +NL
Sbjct: 287 VAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLA 346
Query: 243 VVYTVQGXXXXXXXXXXXXXXXNPTYAEAYNNLG 276
V QG +PT+A+AY+N+G
Sbjct: 347 SVLQQQGKLQEALMHYKEAIRISPTFADAYSNMG 380
Score = 119 bits (298), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 81/289 (28%), Positives = 136/289 (47%), Gaps = 13/289 (4%)
Query: 23 LAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYE 82
LA ++LG K G Q+ I+ Y AL++ P + Y NL + A+ Y
Sbjct: 66 LAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYV 125
Query: 83 KAALERPMYAEAYC---NMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDL 139
A P + YC ++G + K G LE A ACY + + PNF A+A ++L
Sbjct: 126 SALQYNP---DLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNF-------AVAWSNL 175
Query: 140 GTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPH 199
G +G+I + +++KA+ + ++ DA NLG E FD A+ Y A +P+
Sbjct: 176 GCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPN 235
Query: 200 CAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGXXXXXXXXXX 259
A NL +Y ++ +D A++ Y+ A+ ++P+F + NL +G
Sbjct: 236 HAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYN 295
Query: 260 XXXXXNPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQN 308
PT+A++ NNL + R+ G+I A+ Y + L++ P+ A N
Sbjct: 296 TALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSN 344
Score = 116 bits (291), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 79/280 (28%), Positives = 134/280 (47%), Gaps = 7/280 (2%)
Query: 29 DLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALER 88
+L +L AG+ + +Q Y AL+ +P +LG + L + + A CY KA +
Sbjct: 106 NLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ 165
Query: 89 PMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGD 148
P +A A+ N+G ++ +G++ AI +E+ + + PNF A +LG +K
Sbjct: 166 PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNF-------LDAYINLGNVLKEARI 218
Query: 149 INQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLG 208
++ VA Y +AL + ++A NL Y E D+AI Y A PH +A NL
Sbjct: 219 FDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLA 278
Query: 209 VIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGXXXXXXXXXXXXXXXNPTY 268
K++ ++ +A +CY AL + P + SLNNL + QG P +
Sbjct: 279 NALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEF 338
Query: 269 AEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQN 308
A A++NL + + G + A+ Y++ ++I P +A N
Sbjct: 339 AAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSN 378
Score = 109 bits (273), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 77/251 (30%), Positives = 116/251 (46%), Gaps = 7/251 (2%)
Query: 50 ALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLE 109
A+K +P A AY NLG VY E Q A+ Y A +P + + Y N+ GD+E
Sbjct: 59 AIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDME 118
Query: 110 SAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADA 169
A+ Y L +P+ + +DLG +K G + + A Y KA+ ++A A
Sbjct: 119 GAVQAYVSALQYNPDLYCVR-------SDLGNLLKALGRLEEAKACYLKAIETQPNFAVA 171
Query: 170 MYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALS 229
NLG + + +AI +E A +P+ +A NLG + K+ D+AV Y ALS
Sbjct: 172 WSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALS 231
Query: 230 IKPNFSQSLNNLGVVYTVQGXXXXXXXXXXXXXXXNPTYAEAYNNLGVLYRDAGSISLAI 289
+ PN + NL VY QG P + +AY NL ++ GS++ A
Sbjct: 232 LSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAE 291
Query: 290 DAYEQCLKIDP 300
D Y L++ P
Sbjct: 292 DCYNTALRLCP 302
Score = 84.7 bits (208), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 62/214 (28%), Positives = 100/214 (46%), Gaps = 16/214 (7%)
Query: 1 MLVASYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPA 60
+ + + KA++ DP++ A +LG LK A + Y AL + P++A
Sbjct: 187 LAIHHFEKAVTLDPNFLDA-------YINLGNVLKEARIFDRAVAAYLRALSLSPNHAVV 239
Query: 61 YYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLA 120
+ NL VY E D A+ Y +A +P + +AYCN+ K +G + A CY L
Sbjct: 240 HGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALR 299
Query: 121 VSPNFEIAKNNMAIALTDLGTKVKLE-GDINQGVAYYKKALYYNWHYADAMYNLGVAYGE 179
+ P + NN+A +K E G+I + V Y+KAL +A A NL +
Sbjct: 300 LCPTHADSLNNLA--------NIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQ 351
Query: 180 MLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKD 213
K A++ Y+ A +P A+A +N+G K+
Sbjct: 352 QGKLQEALMHYKEAIRISPTFADAYSNMGNTLKE 385
Score = 77.8 bits (190), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 54/198 (27%), Positives = 90/198 (45%), Gaps = 2/198 (1%)
Query: 132 MAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYE 191
+A A ++LG K G + + + +Y+ AL + D NL A + A+ Y
Sbjct: 66 LAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYV 125
Query: 192 LAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGXX 251
A +NP ++LG + K L++A CY A+ +PNF+ + +NLG V+ QG
Sbjct: 126 SALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEI 185
Query: 252 XXXXXXXXXXXXXNPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLL 311
+P + +AY NLG + ++A A+ AY + L + P+ N L
Sbjct: 186 WLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGN--L 243
Query: 312 AMNYINEGHDDKLFEAHR 329
A Y +G D + +R
Sbjct: 244 ACVYYEQGLIDLAIDTYR 261
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 52/178 (29%), Positives = 84/178 (47%), Gaps = 14/178 (7%)
Query: 3 VASYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYY 62
VA+Y +ALS P++ A+V +L G I Y A+++ PH+ AY
Sbjct: 223 VAAYLRALSLSPNH-------AVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYC 275
Query: 63 NLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVS 122
NL E A CY A P +A++ N+ I + +G++E A+ Y + L V
Sbjct: 276 NLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVF 335
Query: 123 PNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEM 180
P F A +N+A L +G + + + +YK+A+ + +ADA N+G EM
Sbjct: 336 PEFAAAHSNLASVLQQ-------QGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEM 386
Score = 57.0 bits (136), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 68/139 (48%), Gaps = 7/139 (5%)
Query: 1 MLVASYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPA 60
+ + +Y +A+ P + P A C +L +LK G+ + Y AL++ P +A +
Sbjct: 255 LAIDTYRRAIELQPHF-PDAYC------NLANALKEKGSVAEAEDCYNTALRLCPTHADS 307
Query: 61 YYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLA 120
NL + E + A+ Y KA P +A A+ N+ + + +G L+ A+ Y+ +
Sbjct: 308 LNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR 367
Query: 121 VSPNFEIAKNNMAIALTDL 139
+SP F A +NM L ++
Sbjct: 368 ISPTFADAYSNMGNTLKEM 386
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 43/81 (53%)
Query: 27 LTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAAL 86
L +L + GN ++ ++ Y +AL++ P +A A+ NL V + + AL Y++A
Sbjct: 308 LNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR 367
Query: 87 ERPMYAEAYCNMGVIYKNRGD 107
P +A+AY NMG K D
Sbjct: 368 ISPTFADAYSNMGNTLKEMQD 388
>pdb|2FO7|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
(Trigonal Crystal Form)
pdb|2HYZ|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
(Orthorombic Crystal Form)
Length = 136
Score = 93.2 bits (230), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 53/141 (37%), Positives = 78/141 (55%), Gaps = 7/141 (4%)
Query: 92 AEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQ 151
AEA+ N+G Y +GD + AI Y++ L + P A A +LG +GD ++
Sbjct: 1 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR-------SAEAWYNLGNAYYKQGDYDE 53
Query: 152 GVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIY 211
+ YY+KAL + A+A YNLG AY + +D AI +Y+ A +P AEA NLG Y
Sbjct: 54 AIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAY 113
Query: 212 KDRDNLDKAVECYQMALSIKP 232
+ + D+A+E YQ AL + P
Sbjct: 114 YKQGDYDEAIEYYQKALELDP 134
Score = 92.0 bits (227), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 51/136 (37%), Positives = 72/136 (52%)
Query: 167 ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQM 226
A+A YNLG AY + +D AI +Y+ A +P AEA NLG Y + + D+A+E YQ
Sbjct: 1 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQK 60
Query: 227 ALSIKPNFSQSLNNLGVVYTVQGXXXXXXXXXXXXXXXNPTYAEAYNNLGVLYRDAGSIS 286
AL + P +++ NLG Y QG +P AEA+ NLG Y G
Sbjct: 61 ALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYD 120
Query: 287 LAIDAYEQCLKIDPDS 302
AI+ Y++ L++DP S
Sbjct: 121 EAIEYYQKALELDPRS 136
Score = 84.3 bits (207), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 52/143 (36%), Positives = 76/143 (53%), Gaps = 7/143 (4%)
Query: 58 APAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYER 117
A A+YNLG Y + YD A+ Y+KA P AEA+ N+G Y +GD + AI Y++
Sbjct: 1 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQK 60
Query: 118 CLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAY 177
L + P A A +LG +GD ++ + YY+KAL + A+A YNLG AY
Sbjct: 61 ALELDP-------RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAY 113
Query: 178 GEMLKFDMAIVFYELAFHFNPHC 200
+ +D AI +Y+ A +P
Sbjct: 114 YKQGDYDEAIEYYQKALELDPRS 136
Score = 83.6 bits (205), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 46/117 (39%), Positives = 67/117 (57%)
Query: 133 AIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYEL 192
A A +LG +GD ++ + YY+KAL + A+A YNLG AY + +D AI +Y+
Sbjct: 1 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQK 60
Query: 193 AFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQG 249
A +P AEA NLG Y + + D+A+E YQ AL + P +++ NLG Y QG
Sbjct: 61 ALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQG 117
Score = 81.3 bits (199), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 48/137 (35%), Positives = 73/137 (53%), Gaps = 7/137 (5%)
Query: 24 AIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEK 83
A +LG + G+ + I+ Y +AL++DP A A+YNLG Y + YD A+ Y+K
Sbjct: 1 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQK 60
Query: 84 AALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKV 143
A P AEA+ N+G Y +GD + AI Y++ L + P A A +LG
Sbjct: 61 ALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-------RSAEAWYNLGNAY 113
Query: 144 KLEGDINQGVAYYKKAL 160
+GD ++ + YY+KAL
Sbjct: 114 YKQGDYDEAIEYYQKAL 130
Score = 72.0 bits (175), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 43/121 (35%), Positives = 63/121 (52%), Gaps = 7/121 (5%)
Query: 3 VASYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYY 62
+ Y KAL DP A +LG + G+ + I+ Y +AL++DP A A+Y
Sbjct: 21 IEYYQKALELDPR-------SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWY 73
Query: 63 NLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVS 122
NLG Y + YD A+ Y+KA P AEA+ N+G Y +GD + AI Y++ L +
Sbjct: 74 NLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 133
Query: 123 P 123
P
Sbjct: 134 P 134
Score = 68.9 bits (167), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 44/129 (34%), Positives = 63/129 (48%), Gaps = 2/129 (1%)
Query: 201 AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGXXXXXXXXXXX 260
AEA NLG Y + + D+A+E YQ AL + P +++ NLG Y QG
Sbjct: 1 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQK 60
Query: 261 XXXXNPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGH 320
+P AEA+ NLG Y G AI+ Y++ L++DP S A N L Y +G
Sbjct: 61 ALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYN--LGNAYYKQGD 118
Query: 321 DDKLFEAHR 329
D+ E ++
Sbjct: 119 YDEAIEYYQ 127
>pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
pdb|1NA0|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
Length = 125
Score = 83.6 bits (205), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 47/119 (39%), Positives = 70/119 (58%)
Query: 131 NMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFY 190
N A A +LG +GD ++ + YY+KAL + + A+A YNLG AY + +D AI +Y
Sbjct: 7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYY 66
Query: 191 ELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQG 249
+ A +P+ AEA NLG Y + + D+A+E YQ AL + PN +++ NLG QG
Sbjct: 67 QKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125
Score = 75.1 bits (183), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 43/110 (39%), Positives = 59/110 (53%)
Query: 167 ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQM 226
A+A YNLG AY + +D AI +Y+ A +P+ AEA NLG Y + + D+A+E YQ
Sbjct: 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQK 68
Query: 227 ALSIKPNFSQSLNNLGVVYTVQGXXXXXXXXXXXXXXXNPTYAEAYNNLG 276
AL + PN +++ NLG Y QG +P AEA NLG
Sbjct: 69 ALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLG 118
Score = 74.7 bits (182), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 43/117 (36%), Positives = 64/117 (54%)
Query: 24 AIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEK 83
A +LG + G+ + I+ Y +AL++DP+ A A+YNLG Y + YD A+ Y+K
Sbjct: 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQK 68
Query: 84 AALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLG 140
A P AEA+ N+G Y +GD + AI Y++ L + PN AK N+ A G
Sbjct: 69 ALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125
Score = 70.1 bits (170), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 40/110 (36%), Positives = 58/110 (52%)
Query: 199 HCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGXXXXXXXXX 258
+ AEA NLG Y + + D+A+E YQ AL + PN +++ NLG Y QG
Sbjct: 7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYY 66
Query: 259 XXXXXXNPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQN 308
+P AEA+ NLG Y G AI+ Y++ L++DP++ A QN
Sbjct: 67 QKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQN 116
Score = 69.3 bits (168), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 47/125 (37%), Positives = 69/125 (55%), Gaps = 8/125 (6%)
Query: 53 IDP-HYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESA 111
+DP + A A+YNLG Y + YD A+ Y+KA P AEA+ N+G Y +GD + A
Sbjct: 3 MDPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEA 62
Query: 112 IACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMY 171
I Y++ L + P N A A +LG +GD ++ + YY+KAL + + A+A
Sbjct: 63 IEYYQKALELDP-------NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQ 115
Query: 172 NLGVA 176
NLG A
Sbjct: 116 NLGNA 120
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 36/104 (34%), Positives = 54/104 (51%), Gaps = 7/104 (6%)
Query: 3 VASYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYY 62
+ Y KAL DP+ A +LG + G+ + I+ Y +AL++DP+ A A+Y
Sbjct: 29 IEYYQKALELDPN-------NAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWY 81
Query: 63 NLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRG 106
NLG Y + YD A+ Y+KA P AEA N+G + +G
Sbjct: 82 NLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125
>pdb|2WQH|A Chain A, Crystal Structure Of Ctpr3y3
Length = 125
Score = 79.3 bits (194), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 47/119 (39%), Positives = 68/119 (57%)
Query: 131 NMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFY 190
N A A +LG +GD ++ + YY+KAL + A+A YNLG AY + +D AI +Y
Sbjct: 7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAIEYY 66
Query: 191 ELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQG 249
+ A P+ AEA NLG Y + + D+A+E YQ AL + PN +++ NLG QG
Sbjct: 67 QKALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAKQNLGNAKQKQG 125
Score = 69.7 bits (169), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 42/117 (35%), Positives = 63/117 (53%)
Query: 24 AIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEK 83
A +LG + G+ + I+ Y +AL++ P+ A A+YNLG Y + YD A+ Y+K
Sbjct: 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQK 68
Query: 84 AALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLG 140
A P AEA+ N+G Y +GD + AI Y++ L + PN AK N+ A G
Sbjct: 69 ALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAKQNLGNAKQKQG 125
Score = 66.2 bits (160), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 46/142 (32%), Positives = 65/142 (45%), Gaps = 34/142 (23%)
Query: 167 ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQM 226
A+A YNLG AY + +D AI +Y+ A P+ AEA NLG Y + + D+A+E YQ
Sbjct: 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQK 68
Query: 227 ALSIKPNFSQSLNNLGVVYTVQGXXXXXXXXXXXXXXXNPTYAEAYNNLGVLYRDAGSIS 286
AL + PN AEA+ NLG Y G
Sbjct: 69 ALELYPNN----------------------------------AEAWYNLGNAYYKQGDYD 94
Query: 287 LAIDAYEQCLKIDPDSRNAGQN 308
AI+ Y++ L++ P++ A QN
Sbjct: 95 EAIEYYQKALELYPNNAEAKQN 116
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 41/109 (37%), Positives = 60/109 (55%), Gaps = 8/109 (7%)
Query: 53 IDP-HYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESA 111
+DP + A A+YNLG Y + YD A+ Y+KA P AEA+ N+G Y +GD + A
Sbjct: 3 MDPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEA 62
Query: 112 IACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKAL 160
I Y++ L + P N A A +LG +GD ++ + YY+KAL
Sbjct: 63 IEYYQKALELYP-------NNAEAWYNLGNAYYKQGDYDEAIEYYQKAL 104
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 52/104 (50%), Gaps = 7/104 (6%)
Query: 3 VASYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYY 62
+ Y KAL P+ A +LG + G+ + I+ Y +AL++ P+ A A+Y
Sbjct: 29 IEYYQKALELYPN-------NAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAWY 81
Query: 63 NLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRG 106
NLG Y + YD A+ Y+KA P AEA N+G + +G
Sbjct: 82 NLGNAYYKQGDYDEAIEYYQKALELYPNNAEAKQNLGNAKQKQG 125
>pdb|3KD7|A Chain A, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|B Chain B, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|C Chain C, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|D Chain D, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|E Chain E, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
Length = 125
Score = 73.2 bits (178), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 43/119 (36%), Positives = 64/119 (53%)
Query: 131 NMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFY 190
N A A +LG +GD + + YY+KAL + + A A YNLG AY + + AI +Y
Sbjct: 7 NSAEAWKNLGNAYYKQGDYQKAIEYYQKALELDPNNASAWYNLGNAYYKQGDYQKAIEYY 66
Query: 191 ELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQG 249
+ A +P+ A+A G Y + + KA+E YQ AL + PN +++ NLG QG
Sbjct: 67 QKALELDPNNAKAWYRRGNAYYKQGDYQKAIEDYQKALELDPNNAKAKQNLGNAKQKQG 125
Score = 69.7 bits (169), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 41/117 (35%), Positives = 61/117 (52%)
Query: 24 AIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEK 83
A +LG + G+ Q I+ Y +AL++DP+ A A+YNLG Y + Y A+ Y+K
Sbjct: 9 AEAWKNLGNAYYKQGDYQKAIEYYQKALELDPNNASAWYNLGNAYYKQGDYQKAIEYYQK 68
Query: 84 AALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLG 140
A P A+A+ G Y +GD + AI Y++ L + PN AK N+ A G
Sbjct: 69 ALELDPNNAKAWYRRGNAYYKQGDYQKAIEDYQKALELDPNNAKAKQNLGNAKQKQG 125
Score = 63.2 bits (152), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 37/110 (33%), Positives = 54/110 (49%)
Query: 199 HCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGXXXXXXXXX 258
+ AEA NLG Y + + KA+E YQ AL + PN + + NLG Y QG
Sbjct: 7 NSAEAWKNLGNAYYKQGDYQKAIEYYQKALELDPNNASAWYNLGNAYYKQGDYQKAIEYY 66
Query: 259 XXXXXXNPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQN 308
+P A+A+ G Y G AI+ Y++ L++DP++ A QN
Sbjct: 67 QKALELDPNNAKAWYRRGNAYYKQGDYQKAIEDYQKALELDPNNAKAKQN 116
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 37/110 (33%), Positives = 53/110 (48%)
Query: 167 ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQM 226
A+A NLG AY + + AI +Y+ A +P+ A A NLG Y + + KA+E YQ
Sbjct: 9 AEAWKNLGNAYYKQGDYQKAIEYYQKALELDPNNASAWYNLGNAYYKQGDYQKAIEYYQK 68
Query: 227 ALSIKPNFSQSLNNLGVVYTVQGXXXXXXXXXXXXXXXNPTYAEAYNNLG 276
AL + PN +++ G Y QG +P A+A NLG
Sbjct: 69 ALELDPNNAKAWYRRGNAYYKQGDYQKAIEDYQKALELDPNNAKAKQNLG 118
Score = 53.1 bits (126), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 42/125 (33%), Positives = 61/125 (48%), Gaps = 8/125 (6%)
Query: 53 IDP-HYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESA 111
+DP + A A+ NLG Y + Y A+ Y+KA P A A+ N+G Y +GD + A
Sbjct: 3 MDPGNSAEAWKNLGNAYYKQGDYQKAIEYYQKALELDPNNASAWYNLGNAYYKQGDYQKA 62
Query: 112 IACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMY 171
I Y++ L + P N A A G +GD + + Y+KAL + + A A
Sbjct: 63 IEYYQKALELDP-------NNAKAWYRRGNAYYKQGDYQKAIEDYQKALELDPNNAKAKQ 115
Query: 172 NLGVA 176
NLG A
Sbjct: 116 NLGNA 120
Score = 46.6 bits (109), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 51/104 (49%), Gaps = 7/104 (6%)
Query: 3 VASYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYY 62
+ Y KAL DP+ A +LG + G+ Q I+ Y +AL++DP+ A A+Y
Sbjct: 29 IEYYQKALELDPN-------NASAWYNLGNAYYKQGDYQKAIEYYQKALELDPNNAKAWY 81
Query: 63 NLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRG 106
G Y + Y A+ Y+KA P A+A N+G + +G
Sbjct: 82 RRGNAYYKQGDYQKAIEDYQKALELDPNNAKAKQNLGNAKQKQG 125
>pdb|1NA3|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
pdb|1NA3|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
Length = 91
Score = 68.2 bits (165), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/83 (42%), Positives = 50/83 (60%)
Query: 167 ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQM 226
A+A YNLG AY + +D AI +Y+ A +P+ AEA NLG Y + + D+A+E YQ
Sbjct: 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQK 68
Query: 227 ALSIKPNFSQSLNNLGVVYTVQG 249
AL + PN +++ NLG QG
Sbjct: 69 ALELDPNNAEAKQNLGNAKQKQG 91
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/89 (39%), Positives = 49/89 (55%), Gaps = 1/89 (1%)
Query: 53 IDP-HYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESA 111
+DP + A A+YNLG Y + YD A+ Y+KA P AEA+ N+G Y +GD + A
Sbjct: 3 MDPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEA 62
Query: 112 IACYERCLAVSPNFEIAKNNMAIALTDLG 140
I Y++ L + PN AK N+ A G
Sbjct: 63 IEYYQKALELDPNNAEAKQNLGNAKQKQG 91
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 47/78 (60%)
Query: 131 NMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFY 190
N A A +LG +GD ++ + YY+KAL + + A+A YNLG AY + +D AI +Y
Sbjct: 7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYY 66
Query: 191 ELAFHFNPHCAEACNNLG 208
+ A +P+ AEA NLG
Sbjct: 67 QKALELDPNNAEAKQNLG 84
Score = 49.7 bits (117), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 47/85 (55%), Gaps = 7/85 (8%)
Query: 92 AEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQ 151
AEA+ N+G Y +GD + AI Y++ L + PN A A +LG +GD ++
Sbjct: 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-------NAEAWYNLGNAYYKQGDYDE 61
Query: 152 GVAYYKKALYYNWHYADAMYNLGVA 176
+ YY+KAL + + A+A NLG A
Sbjct: 62 AIEYYQKALELDPNNAEAKQNLGNA 86
Score = 49.7 bits (117), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 46/83 (55%)
Query: 24 AIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEK 83
A +LG + G+ + I+ Y +AL++DP+ A A+YNLG Y + YD A+ Y+K
Sbjct: 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQK 68
Query: 84 AALERPMYAEAYCNMGVIYKNRG 106
A P AEA N+G + +G
Sbjct: 69 ALELDPNNAEAKQNLGNAKQKQG 91
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 39/78 (50%)
Query: 199 HCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGXXXXXXXXX 258
+ AEA NLG Y + + D+A+E YQ AL + PN +++ NLG Y QG
Sbjct: 7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYY 66
Query: 259 XXXXXXNPTYAEAYNNLG 276
+P AEA NLG
Sbjct: 67 QKALELDPNNAEAKQNLG 84
>pdb|3VTX|A Chain A, Crystal Structure Of Mama Protein
pdb|3VTX|B Chain B, Crystal Structure Of Mama Protein
pdb|3VTY|A Chain A, Crystal Structure Of Mama
pdb|3VTY|B Chain B, Crystal Structure Of Mama
pdb|3VTY|C Chain C, Crystal Structure Of Mama
pdb|3VTY|D Chain D, Crystal Structure Of Mama
Length = 184
Score = 62.0 bits (149), Expect = 1e-09, Method: Composition-based stats.
Identities = 45/160 (28%), Positives = 73/160 (45%), Gaps = 17/160 (10%)
Query: 95 YCNMGVIYKNRGDLESAIACYERCLAVSPN-----FEIAKNNMAIALTDLGTKVKLEGDI 149
Y ++G + +GD + AI Y++ L PN ++ K M I L
Sbjct: 8 YMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLP------------ 55
Query: 150 NQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGV 209
N + KK + + A+A Y LG A + + AI + A N A+A LG+
Sbjct: 56 NDAIESLKKFVVLDTTSAEAYYILGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGL 115
Query: 210 IYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQG 249
+Y DKA+E Y+ +SIKP F ++ ++G+ Y +G
Sbjct: 116 VYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKG 155
Score = 57.8 bits (138), Expect = 3e-08, Method: Composition-based stats.
Identities = 37/140 (26%), Positives = 66/140 (47%), Gaps = 7/140 (5%)
Query: 3 VASYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYY 62
+ +Y K L ADP+ L LG + G D I+ + + +D A AYY
Sbjct: 25 IRAYKKVLKADPNNVET-------LLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYY 77
Query: 63 NLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVS 122
LG + + A+ ++A +YA+AY +G++Y + G+ + AI YE+ +++
Sbjct: 78 ILGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK 137
Query: 123 PNFEIAKNNMAIALTDLGTK 142
P F A ++ +A G +
Sbjct: 138 PGFIRAYQSIGLAYEGKGLR 157
Score = 52.8 bits (125), Expect = 8e-07, Method: Composition-based stats.
Identities = 26/83 (31%), Positives = 46/83 (55%)
Query: 30 LGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERP 89
LG++ + Q I A+ ++ YA AYY LG+VY + ++D A+ YEK +P
Sbjct: 79 LGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKP 138
Query: 90 MYAEAYCNMGVIYKNRGDLESAI 112
+ AY ++G+ Y+ +G + A+
Sbjct: 139 GFIRAYQSIGLAYEGKGLRDEAV 161
Score = 43.5 bits (101), Expect = 4e-04, Method: Composition-based stats.
Identities = 36/141 (25%), Positives = 59/141 (41%), Gaps = 2/141 (1%)
Query: 183 FDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLG 242
FD AI Y+ +P+ E LG Y D + A+E + + + +++ LG
Sbjct: 21 FDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILG 80
Query: 243 VVYTVQGXXXXXXXXXXXXXXXNPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDS 302
+ N YA+AY LG++Y G AI+AYE+ + I P
Sbjct: 81 SANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGF 140
Query: 303 RNAGQNRLLAMNYINEGHDDK 323
A Q+ + + Y +G D+
Sbjct: 141 IRAYQS--IGLAYEGKGLRDE 159
>pdb|2AVP|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
Length = 70
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/66 (43%), Positives = 40/66 (60%)
Query: 167 ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQM 226
A+A YNLG AY + +D AI +Y+ A +P AEA NLG Y + + D+A+E YQ
Sbjct: 3 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQK 62
Query: 227 ALSIKP 232
AL + P
Sbjct: 63 ALELDP 68
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 38/66 (57%)
Query: 58 APAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYER 117
A A+YNLG Y + YD A+ Y+KA P AEA+ N+G Y +GD + AI Y++
Sbjct: 3 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQK 62
Query: 118 CLAVSP 123
L + P
Sbjct: 63 ALELDP 68
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 38/68 (55%)
Query: 133 AIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYEL 192
A A +LG +GD ++ + YY+KAL + A+A YNLG AY + +D AI +Y+
Sbjct: 3 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQK 62
Query: 193 AFHFNPHC 200
A +P
Sbjct: 63 ALELDPRS 70
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 37/69 (53%), Gaps = 7/69 (10%)
Query: 92 AEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQ 151
AEA+ N+G Y +GD + AI Y++ L + P A A +LG +GD ++
Sbjct: 3 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-------RSAEAWYNLGNAYYKQGDYDE 55
Query: 152 GVAYYKKAL 160
+ YY+KAL
Sbjct: 56 AIEYYQKAL 64
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 29/50 (58%)
Query: 200 CAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQG 249
AEA NLG Y + + D+A+E YQ AL + P +++ NLG Y QG
Sbjct: 2 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQG 51
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 35/61 (57%)
Query: 24 AIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEK 83
A +LG + G+ + I+ Y +AL++DP A A+YNLG Y + YD A+ Y+K
Sbjct: 3 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQK 62
Query: 84 A 84
A
Sbjct: 63 A 63
Score = 34.7 bits (78), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
Query: 269 AEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAH 328
AEA+ NLG Y G AI+ Y++ L++DP S A N L Y +G D+ E +
Sbjct: 3 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYN--LGNAYYKQGDYDEAIEYY 60
Query: 329 R 329
+
Sbjct: 61 Q 61
>pdb|4EQF|A Chain A, Trip8b-1a#206-567 Interacting With The Carboxy-Terminal
Seven Residues Of Hcn2
Length = 365
Score = 56.2 bits (134), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 52/199 (26%), Positives = 86/199 (43%), Gaps = 5/199 (2%)
Query: 50 ALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLE 109
A+ DP A A+ LG+ +E A+ ++ +P +A + V Y N +
Sbjct: 91 AILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQ 150
Query: 110 SAIACYERCLAVSPNFE-IAKNNMAI-ALTDLGTKVKLEGDINQGVA-YYKKALYYNWHY 166
A + + +P ++ + KN LT +K ++ + +GV Y +A + N
Sbjct: 151 DACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDM 210
Query: 167 ADA--MYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECY 224
D LGV + +F+ AI + A P N LG + D ++AVE Y
Sbjct: 211 IDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAY 270
Query: 225 QMALSIKPNFSQSLNNLGV 243
AL I+P F +S NLG+
Sbjct: 271 TRALEIQPGFIRSRYNLGI 289
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 39/89 (43%), Gaps = 3/89 (3%)
Query: 53 IDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAI 112
IDP LGV++ +++ A+ + A RP + +G N E A+
Sbjct: 211 IDPDLQTG---LGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAV 267
Query: 113 ACYERCLAVSPNFEIAKNNMAIALTDLGT 141
Y R L + P F ++ N+ I+ +LG
Sbjct: 268 EAYTRALEIQPGFIRSRYNLGISCINLGA 296
Score = 37.7 bits (86), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 46/100 (46%), Gaps = 8/100 (8%)
Query: 153 VAYYKKALYYNWHYADAMYNLGVAYGEMLK------FDMAIVFYELAFHFNPHCAEACNN 206
V+ +K Y+ H + + A+ E LK + I+F E A +P AEA
Sbjct: 47 VSASEKGYYF--HTENPFKDWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQF 104
Query: 207 LGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYT 246
LG+ + +N A+ Q L ++PN ++L L V YT
Sbjct: 105 LGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYT 144
Score = 35.8 bits (81), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 38/70 (54%), Gaps = 2/70 (2%)
Query: 265 NPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKL 324
+P AEA+ LG+ + + AI A ++CL++ P++ A LA++Y N H
Sbjct: 95 DPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALM--ALAVSYTNTSHQQDA 152
Query: 325 FEAHRDWGKR 334
EA ++W K+
Sbjct: 153 CEALKNWIKQ 162
Score = 33.9 bits (76), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 37/174 (21%), Positives = 62/174 (35%), Gaps = 12/174 (6%)
Query: 140 GTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPH 199
G K EGD+ + + + A+ + A+A LG+ E AIV + P+
Sbjct: 72 GLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPN 131
Query: 200 CAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGXXXXXXXXXX 259
+A L V Y + + A E + + P + + N +
Sbjct: 132 NLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSS 191
Query: 260 XXXXXNPTYAEAYNN------------LGVLYRDAGSISLAIDAYEQCLKIDPD 301
Y EA + LGVL+ +G + AIDA+ L + P+
Sbjct: 192 VLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPE 245
Score = 32.3 bits (72), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 27/52 (51%)
Query: 30 LGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCY 81
LG +L +++ ++ Y AL+I P + + YNLG+ L Y A+ +
Sbjct: 253 LGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNF 304
>pdb|2C0L|A Chain A, Tpr Domain Of Human Pex5p In Complex With Human Mscp2
Length = 305
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 54/242 (22%), Positives = 90/242 (37%), Gaps = 28/242 (11%)
Query: 81 YEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLG 140
+E A + P + EA+ +G AI+ RCL + P+ + A +A++ T+
Sbjct: 24 FEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTN-- 81
Query: 141 TKVKLEGDINQGVAYYKKALYYNWHYADAMYN----------------LGVAYGEMLKFD 184
E Q + L Y YA + LG + L +
Sbjct: 82 -----ESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLE 136
Query: 185 MAIVFYELAFHFNPHCAE---ACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNL 241
+ +F A +P + C LGV++ DKAV+C+ ALS++PN N L
Sbjct: 137 VKELFLA-AVRLDPTSIDPDVQCG-LGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKL 194
Query: 242 GVVYTVQGXXXXXXXXXXXXXXXNPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPD 301
G P Y + NLG+ + G+ A++ + + L +
Sbjct: 195 GATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRK 254
Query: 302 SR 303
SR
Sbjct: 255 SR 256
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 46/97 (47%), Gaps = 2/97 (2%)
Query: 47 YYEALKIDPHY--APAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKN 104
+ A+++DP LGV+++ +YD A+ C+ A RP + +G N
Sbjct: 141 FLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLAN 200
Query: 105 RGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGT 141
E A+A Y R L + P + ++ N+ I+ +LG
Sbjct: 201 GNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGA 237
Score = 38.5 bits (88), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 35/67 (52%), Gaps = 2/67 (2%)
Query: 265 NPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKL 324
+P + EA+ LG + LAI A +CL++ PD++ A LA+++ NE +
Sbjct: 31 DPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMA--LAVSFTNESLQRQA 88
Query: 325 FEAHRDW 331
E RDW
Sbjct: 89 CEILRDW 95
Score = 33.1 bits (74), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 27/115 (23%), Positives = 46/115 (40%), Gaps = 7/115 (6%)
Query: 6 YHKALSADP-SYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNL 64
+ A+ DP S P +C LG L+G + + AL + P+ + L
Sbjct: 141 FLAAVRLDPTSIDPDVQC------GLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKL 194
Query: 65 GVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCL 119
G + Q + A+ Y +A +P Y + N+G+ N G A+ + L
Sbjct: 195 GATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEAL 249
>pdb|2C0M|A Chain A, Apo Form Of The Tpr Domain Of The Pex5p Receptor
pdb|2C0M|B Chain B, Apo Form Of The Tpr Domain Of The Pex5p Receptor
pdb|2C0M|C Chain C, Apo Form Of The Tpr Domain Of The Pex5p Receptor
pdb|2C0M|F Chain F, Apo Form Of The Tpr Domain Of The Pex5p Receptor
Length = 319
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 55/246 (22%), Positives = 92/246 (37%), Gaps = 28/246 (11%)
Query: 77 ALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIAL 136
A+ +E A + P + EA+ +G AI+ RCL + P+ + A +A++
Sbjct: 34 AVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSF 93
Query: 137 TDLGTKVKLEGDINQGVAYYKKALYYNWHYAD----------------AMYNLGVAYGEM 180
T+ E Q + L Y YA + LG +
Sbjct: 94 TN-------ESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDS 146
Query: 181 LKFDMAIVFYELAFHFNPHCAE---ACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQS 237
L ++ +F A +P + C LGV++ DKAV+C+ ALS++PN
Sbjct: 147 LFLEVKELFLA-AVRLDPTSIDPDVQCG-LGVLFNLSGEYDKAVDCFTAALSVRPNDYLL 204
Query: 238 LNNLGVVYTVQGXXXXXXXXXXXXXXXNPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLK 297
N LG P Y + NLG+ + G+ A++ + + L
Sbjct: 205 WNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALN 264
Query: 298 IDPDSR 303
+ SR
Sbjct: 265 MQRKSR 270
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 46/97 (47%), Gaps = 2/97 (2%)
Query: 47 YYEALKIDPHY--APAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKN 104
+ A+++DP LGV+++ +YD A+ C+ A RP + +G N
Sbjct: 155 FLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLAN 214
Query: 105 RGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGT 141
E A+A Y R L + P + ++ N+ I+ +LG
Sbjct: 215 GNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGA 251
Score = 38.1 bits (87), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 35/67 (52%), Gaps = 2/67 (2%)
Query: 265 NPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKL 324
+P + EA+ LG + LAI A +CL++ PD++ A LA+++ NE +
Sbjct: 45 DPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMA--LAVSFTNESLQRQA 102
Query: 325 FEAHRDW 331
E RDW
Sbjct: 103 CEILRDW 109
Score = 33.1 bits (74), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 27/115 (23%), Positives = 46/115 (40%), Gaps = 7/115 (6%)
Query: 6 YHKALSADP-SYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNL 64
+ A+ DP S P +C LG L+G + + AL + P+ + L
Sbjct: 155 FLAAVRLDPTSIDPDVQC------GLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKL 208
Query: 65 GVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCL 119
G + Q + A+ Y +A +P Y + N+G+ N G A+ + L
Sbjct: 209 GATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEAL 263
>pdb|2J9Q|A Chain A, A Novel Conformation For The Tpr Domain Of Pex5p
pdb|2J9Q|B Chain B, A Novel Conformation For The Tpr Domain Of Pex5p
Length = 328
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 54/242 (22%), Positives = 90/242 (37%), Gaps = 28/242 (11%)
Query: 81 YEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLG 140
+E A + P + EA+ +G AI+ RCL + P+ + A +A++ T+
Sbjct: 47 FEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTN-- 104
Query: 141 TKVKLEGDINQGVAYYKKALYYNWHYADAMYN----------------LGVAYGEMLKFD 184
E Q + L Y YA + LG + L +
Sbjct: 105 -----ESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLE 159
Query: 185 MAIVFYELAFHFNPHCAE---ACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNL 241
+ +F A +P + C LGV++ DKAV+C+ ALS++PN N L
Sbjct: 160 VKELFLA-AVRLDPTSIDPDVQCG-LGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKL 217
Query: 242 GVVYTVQGXXXXXXXXXXXXXXXNPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPD 301
G P Y + NLG+ + G+ A++ + + L +
Sbjct: 218 GATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRK 277
Query: 302 SR 303
SR
Sbjct: 278 SR 279
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 46/96 (47%), Gaps = 2/96 (2%)
Query: 47 YYEALKIDPHY--APAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKN 104
+ A+++DP LGV+++ +YD A+ C+ A RP + +G N
Sbjct: 164 FLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLAN 223
Query: 105 RGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLG 140
E A+A Y R L + P + ++ N+ I+ +LG
Sbjct: 224 GNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLG 259
Score = 38.1 bits (87), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 35/67 (52%), Gaps = 2/67 (2%)
Query: 265 NPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKL 324
+P + EA+ LG + LAI A +CL++ PD++ A LA+++ NE +
Sbjct: 54 DPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMA--LAVSFTNESLQRQA 111
Query: 325 FEAHRDW 331
E RDW
Sbjct: 112 CEILRDW 118
Score = 33.1 bits (74), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 27/115 (23%), Positives = 46/115 (40%), Gaps = 7/115 (6%)
Query: 6 YHKALSADP-SYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNL 64
+ A+ DP S P +C LG L+G + + AL + P+ + L
Sbjct: 164 FLAAVRLDPTSIDPDVQC------GLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKL 217
Query: 65 GVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCL 119
G + Q + A+ Y +A +P Y + N+G+ N G A+ + L
Sbjct: 218 GATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEAL 272
>pdb|3R9A|B Chain B, Human Alanine-Glyoxylate Aminotransferase In Complex With
The Tpr Domain Of Human Pex5p
pdb|3R9A|D Chain D, Human Alanine-Glyoxylate Aminotransferase In Complex With
The Tpr Domain Of Human Pex5p
Length = 328
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 54/242 (22%), Positives = 90/242 (37%), Gaps = 28/242 (11%)
Query: 81 YEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLG 140
+E A + P + EA+ +G AI+ RCL + P+ + A +A++ T+
Sbjct: 47 FEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTN-- 104
Query: 141 TKVKLEGDINQGVAYYKKALYYNWHYAD----------------AMYNLGVAYGEMLKFD 184
E Q + L Y YA + LG + L +
Sbjct: 105 -----ESLQRQACETLRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLE 159
Query: 185 MAIVFYELAFHFNPHCAE---ACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNL 241
+ +F A +P + C LGV++ DKAV+C+ ALS++PN N L
Sbjct: 160 VKELFLA-AVRLDPTSIDPDVQCG-LGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKL 217
Query: 242 GVVYTVQGXXXXXXXXXXXXXXXNPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPD 301
G P Y + NLG+ + G+ A++ + + L +
Sbjct: 218 GATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRK 277
Query: 302 SR 303
SR
Sbjct: 278 SR 279
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 46/96 (47%), Gaps = 2/96 (2%)
Query: 47 YYEALKIDPHY--APAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKN 104
+ A+++DP LGV+++ +YD A+ C+ A RP + +G N
Sbjct: 164 FLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLAN 223
Query: 105 RGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLG 140
E A+A Y R L + P + ++ N+ I+ +LG
Sbjct: 224 GNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLG 259
Score = 38.9 bits (89), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 35/67 (52%), Gaps = 2/67 (2%)
Query: 265 NPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKL 324
+P + EA+ LG + LAI A +CL++ PD++ A LA+++ NE +
Sbjct: 54 DPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMA--LAVSFTNESLQRQA 111
Query: 325 FEAHRDW 331
E RDW
Sbjct: 112 CETLRDW 118
Score = 32.7 bits (73), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 27/115 (23%), Positives = 46/115 (40%), Gaps = 7/115 (6%)
Query: 6 YHKALSADP-SYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNL 64
+ A+ DP S P +C LG L+G + + AL + P+ + L
Sbjct: 164 FLAAVRLDPTSIDPDVQC------GLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKL 217
Query: 65 GVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCL 119
G + Q + A+ Y +A +P Y + N+G+ N G A+ + L
Sbjct: 218 GATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEAL 272
>pdb|1FCH|A Chain A, Crystal Structure Of The Pts1 Complexed To The Tpr Region
Of Human Pex5
pdb|1FCH|B Chain B, Crystal Structure Of The Pts1 Complexed To The Tpr Region
Of Human Pex5
Length = 368
Score = 50.1 bits (118), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 55/246 (22%), Positives = 92/246 (37%), Gaps = 28/246 (11%)
Query: 77 ALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIAL 136
A+ +E A + P + EA+ +G AI+ RCL + P+ + A +A++
Sbjct: 83 AVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSF 142
Query: 137 TDLGTKVKLEGDINQGVAYYKKALYYNWHYAD----------------AMYNLGVAYGEM 180
T+ E Q + L Y YA + LG +
Sbjct: 143 TN-------ESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDS 195
Query: 181 LKFDMAIVFYELAFHFNPHCAE---ACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQS 237
L ++ +F A +P + C LGV++ DKAV+C+ ALS++PN
Sbjct: 196 LFLEVKELFLA-AVRLDPTSIDPDVQCG-LGVLFNLSGEYDKAVDCFTAALSVRPNDYLL 253
Query: 238 LNNLGVVYTVQGXXXXXXXXXXXXXXXNPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLK 297
N LG P Y + NLG+ + G+ A++ + + L
Sbjct: 254 WNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALN 313
Query: 298 IDPDSR 303
+ SR
Sbjct: 314 MQRKSR 319
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 46/97 (47%), Gaps = 2/97 (2%)
Query: 47 YYEALKIDPHY--APAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKN 104
+ A+++DP LGV+++ +YD A+ C+ A RP + +G N
Sbjct: 204 FLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLAN 263
Query: 105 RGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGT 141
E A+A Y R L + P + ++ N+ I+ +LG
Sbjct: 264 GNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGA 300
Score = 37.7 bits (86), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 35/67 (52%), Gaps = 2/67 (2%)
Query: 265 NPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKL 324
+P + EA+ LG + LAI A +CL++ PD++ A LA+++ NE +
Sbjct: 94 DPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMA--LAVSFTNESLQRQA 151
Query: 325 FEAHRDW 331
E RDW
Sbjct: 152 CEILRDW 158
Score = 32.7 bits (73), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 27/115 (23%), Positives = 46/115 (40%), Gaps = 7/115 (6%)
Query: 6 YHKALSADP-SYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNL 64
+ A+ DP S P +C LG L+G + + AL + P+ + L
Sbjct: 204 FLAAVRLDPTSIDPDVQC------GLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKL 257
Query: 65 GVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCL 119
G + Q + A+ Y +A +P Y + N+G+ N G A+ + L
Sbjct: 258 GATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEAL 312
>pdb|3Q3E|A Chain A, Crystal Structure Of The Actinobacillus Pleuropneumoniae
Hmw1c Glycosyltransferase
pdb|3Q3E|B Chain B, Crystal Structure Of The Actinobacillus Pleuropneumoniae
Hmw1c Glycosyltransferase
pdb|3Q3H|A Chain A, Crystal Structure Of The Actinobacillus Pleuropneumoniae
Hmw1c Glycosyltransferase In Complex With Udp-Glc
pdb|3Q3H|B Chain B, Crystal Structure Of The Actinobacillus Pleuropneumoniae
Hmw1c Glycosyltransferase In Complex With Udp-Glc
pdb|3Q3I|A Chain A, Crystal Structure Of The Actinobacillus Pleuropneumoniae
Hmw1c Glycosyltransferase In The Presence Of Peptide
N1131
pdb|3Q3I|B Chain B, Crystal Structure Of The Actinobacillus Pleuropneumoniae
Hmw1c Glycosyltransferase In The Presence Of Peptide
N1131
Length = 631
Score = 49.3 bits (116), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 68/262 (25%), Positives = 108/262 (41%), Gaps = 31/262 (11%)
Query: 457 APVQVTWIGYPNTTGLPTIDYRITDSLADPPETKQKHVEELIRLPECFLCYTPSPEAGPV 516
AP+Q +G+P TT I+Y I + D +++ E L+RLP+ L Y PS A
Sbjct: 373 APIQAIALGHPATTHSDFIEYVIVED--DYVGSEECFSETLLRLPKDALPYVPSALAPEK 430
Query: 517 CPTPALTN-GFITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFCC----DSVR 571
N + G + K+ P L+ I R VK + +
Sbjct: 431 VDYLLRENPEVVNIGIASTTMKLNPYFLEALKAI-----RDRAKVKVHFHFALGQSNGIT 485
Query: 572 H----RFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPYAGTTTTCESLY 627
H RF+ + LG + P H +++ D+ ++ FP+ T + +
Sbjct: 486 HPYVERFIKSY--LGDSATAHPHSPY----HQYLRILHNCDMMVNPFPFGNTNGIIDMVT 539
Query: 628 MGVPCVTMAGS-VHAHNVGVSLLTKVGL-KHLIAKNEDEYVQLALQLASDVTALANLRM- 684
+G+ V G+ VH H + L ++GL + LIA DEYV+ A++LA + LR
Sbjct: 540 LGLVGVCKTGAEVHEH-IDEGLFKRLGLPEWLIANTVDEYVERAVRLAENHQERLELRRY 598
Query: 685 -----SLRDLMSKSPVCDGQNF 701
L L + P GQ F
Sbjct: 599 IIENNGLNTLFTGDPRPMGQVF 620
>pdb|2VYI|A Chain A, Crystal Structure Of The Tpr Domain Of Human Sgt
pdb|2VYI|B Chain B, Crystal Structure Of The Tpr Domain Of Human Sgt
Length = 131
Score = 46.2 bits (108), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 56/113 (49%), Gaps = 7/113 (6%)
Query: 34 LKLAGNTQDGIQK-------YYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAAL 86
LK GN Q ++ Y +A++++P A + N YS+L Y A+ E+A
Sbjct: 15 LKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAIC 74
Query: 87 ERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDL 139
P Y++AY MG+ + A+A Y++ L + P+ E K+N+ IA L
Sbjct: 75 IDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKL 127
Score = 34.3 bits (77), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 22/98 (22%), Positives = 40/98 (40%)
Query: 215 DNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGXXXXXXXXXXXXXXXNPTYAEAYNN 274
+N + AV Y A+ + P + N Y+ G +P Y++AY
Sbjct: 26 ENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGR 85
Query: 275 LGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLA 312
+G+ A+ Y++ L++DPD+ N +A
Sbjct: 86 MGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIA 123
Score = 32.7 bits (73), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 37/79 (46%), Gaps = 7/79 (8%)
Query: 6 YHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLG 65
Y KA+ +P+ A+ + + GN +Q A+ IDP Y+ AY +G
Sbjct: 35 YGKAIELNPAN-------AVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMG 87
Query: 66 VVYSELMQYDTALGCYEKA 84
+ S L ++ A+ Y+KA
Sbjct: 88 LALSSLNKHVEAVAYYKKA 106
Score = 29.3 bits (64), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 26/108 (24%), Positives = 49/108 (45%), Gaps = 1/108 (0%)
Query: 137 TDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHF 196
T+ ++K+E + V +Y KA+ N A N AY ++ + A+ E A
Sbjct: 17 TEGNEQMKVE-NFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICI 75
Query: 197 NPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVV 244
+P ++A +G+ + +AV Y+ AL + P+ +NL +
Sbjct: 76 DPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIA 123
>pdb|3CV0|A Chain A, Structure Of Peroxisomal Targeting Signal 1 (Pts1) Binding
Domain Of Trypanosoma Brucei Peroxin 5 (Tbpex5)complexed
To T. Brucei Phosphoglucoisomerase (Pgi) Pts1 Peptide
pdb|3CVL|A Chain A, Structure Of Peroxisomal Targeting Signal 1 (Pts1) Binding
Domain Of Trypanosoma Brucei Peroxin 5 (Tbpex5)complexed
To T. Brucei Phosphofructokinase (Pfk) Pts1 Peptide
pdb|3CVN|A Chain A, Structure Of Peroxisomal Targeting Signal 1 (Pts1) Binding
Domain Of Trypanosoma Brucei Peroxin 5 (Tbpex5)complexed
To T. Brucei Glyceraldehyde-3-Phosphate Dehydrogenase
(Gapdh) Pts1 Peptide
pdb|3CVP|A Chain A, Structure Of Peroxisomal Targeting Signal 1 (Pts1) Binding
Domain Of Trypanosoma Brucei Peroxin 5 (Tbpex5)complexed
To Pts1 Peptide (10-Skl)
Length = 327
Score = 45.8 bits (107), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 49/93 (52%)
Query: 48 YEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGD 107
+ AL+++P+ A + +LGV+Y+ YD+A +A RP A+ + +G N
Sbjct: 162 HAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNR 221
Query: 108 LESAIACYERCLAVSPNFEIAKNNMAIALTDLG 140
+ A+ Y R L ++P + NMA++ +++
Sbjct: 222 PQEALDAYNRALDINPGYVRVMYNMAVSYSNMS 254
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 52/104 (50%), Gaps = 8/104 (7%)
Query: 84 AALE-RPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTK 142
AALE P A+ + ++GV+Y + +SA A R + + P+ N + L + G +
Sbjct: 163 AALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLAN-GNR 221
Query: 143 VKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMA 186
+ + + Y +AL N Y MYN+ V+Y M ++D+A
Sbjct: 222 PQ------EALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLA 259
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 27/54 (50%)
Query: 24 AIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTA 77
A + LG +L Q+ + Y AL I+P Y YN+ V YS + QYD A
Sbjct: 206 AQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLA 259
Score = 38.9 bits (89), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 45/234 (19%), Positives = 82/234 (35%), Gaps = 26/234 (11%)
Query: 55 PHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIAC 114
P A+ +LG+ +E + A+ A + P + + V + N + +A+A
Sbjct: 52 PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALAS 111
Query: 115 YERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLG 174
L P +E LG+ V L+ D++ + ++
Sbjct: 112 LRAWLLSQPQYE-----------QLGS-VNLQADVDIDDLNVQSEDFF------------ 147
Query: 175 VAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNF 234
+ ++ A NP+ A+ +LGV+Y +N D A + A+ ++P+
Sbjct: 148 --FAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDD 205
Query: 235 SQSLNNLGVVYTVQGXXXXXXXXXXXXXXXNPTYAEAYNNLGVLYRDAGSISLA 288
+Q N LG NP Y N+ V Y + LA
Sbjct: 206 AQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLA 259
Score = 36.6 bits (83), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 35/82 (42%), Gaps = 3/82 (3%)
Query: 222 ECYQM---ALSIKPNFSQSLNNLGVVYTVQGXXXXXXXXXXXXXXXNPTYAEAYNNLGVL 278
EC + AL + PN +Q +LGV+Y + P A+ +N LG
Sbjct: 156 ECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGAT 215
Query: 279 YRDAGSISLAIDAYEQCLKIDP 300
+ A+DAY + L I+P
Sbjct: 216 LANGNRPQEALDAYNRALDINP 237
Score = 29.3 bits (64), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 30/128 (23%), Positives = 46/128 (35%), Gaps = 12/128 (9%)
Query: 7 HKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGV 66
H AL +P+ A + LG L+ N A+++ P A + LG
Sbjct: 162 HAALEMNPND-------AQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGA 214
Query: 67 VYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAI-----ACYERCLAV 121
+ + AL Y +A P Y NM V Y N + A A Y +
Sbjct: 215 TLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGT 274
Query: 122 SPNFEIAK 129
+P E ++
Sbjct: 275 TPTGEASR 282
>pdb|3CVQ|A Chain A, Structure Of Peroxisomal Targeting Signal 1 (pts1) Binding
Domain Of Trypanosoma Brucei Peroxin 5 (tbpex5)complexed
To Pts1 Peptide (7- Skl)
Length = 327
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 49/93 (52%)
Query: 48 YEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGD 107
+ AL+++P+ A + +LGV+Y+ YD+A +A RP A+ + +G N
Sbjct: 162 HAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNR 221
Query: 108 LESAIACYERCLAVSPNFEIAKNNMAIALTDLG 140
+ A+ Y R L ++P + NMA++ +++
Sbjct: 222 PQEALDAYNRALDINPGYVRVMYNMAVSYSNMS 254
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 52/104 (50%), Gaps = 8/104 (7%)
Query: 84 AALE-RPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTK 142
AALE P A+ + ++GV+Y + +SA A R + + P+ N + L + G +
Sbjct: 163 AALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLAN-GNR 221
Query: 143 VKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMA 186
+ + + Y +AL N Y MYN+ V+Y M ++D+A
Sbjct: 222 PQ------EALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLA 259
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 27/54 (50%)
Query: 24 AIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTA 77
A + LG +L Q+ + Y AL I+P Y YN+ V YS + QYD A
Sbjct: 206 AQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLA 259
Score = 38.5 bits (88), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 38/96 (39%)
Query: 193 AFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGXXX 252
A NP+ A+ +LGV+Y +N D A + A+ ++P+ +Q N LG
Sbjct: 164 ALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQ 223
Query: 253 XXXXXXXXXXXXNPTYAEAYNNLGVLYRDAGSISLA 288
NP Y N+ V Y + LA
Sbjct: 224 EALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLA 259
Score = 36.6 bits (83), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 35/82 (42%), Gaps = 3/82 (3%)
Query: 222 ECYQM---ALSIKPNFSQSLNNLGVVYTVQGXXXXXXXXXXXXXXXNPTYAEAYNNLGVL 278
EC + AL + PN +Q +LGV+Y + P A+ +N LG
Sbjct: 156 ECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGAT 215
Query: 279 YRDAGSISLAIDAYEQCLKIDP 300
+ A+DAY + L I+P
Sbjct: 216 LANGNRPQEALDAYNRALDINP 237
Score = 29.3 bits (64), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 30/128 (23%), Positives = 46/128 (35%), Gaps = 12/128 (9%)
Query: 7 HKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGV 66
H AL +P+ A + LG L+ N A+++ P A + LG
Sbjct: 162 HAALEMNPND-------AQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGA 214
Query: 67 VYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAI-----ACYERCLAV 121
+ + AL Y +A P Y NM V Y N + A A Y +
Sbjct: 215 TLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGT 274
Query: 122 SPNFEIAK 129
+P E ++
Sbjct: 275 TPTGEASR 282
>pdb|2Q7F|A Chain A, Crystal Structure Of Yrrb: A Tpr Protein With An Unusual
Peptide- Binding Site
pdb|2Q7F|B Chain B, Crystal Structure Of Yrrb: A Tpr Protein With An Unusual
Peptide- Binding Site
Length = 243
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 49/198 (24%), Positives = 88/198 (44%), Gaps = 11/198 (5%)
Query: 38 GNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCN 97
G+ + + + +A++ + A Y N + S + + + AL Y+KA A AY
Sbjct: 37 GDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYG 96
Query: 98 MGVIYKNRGDLESAIACYERCL-AVSPNFEIAKNNMAIALTDLGTK-VKLEGDINQGVAY 155
G +Y + + A +E+ L A N ++ LGT VKLE + Y
Sbjct: 97 AGNVYVVKEMYKEAKDMFEKALRAGMENGDL--------FYMLGTVLVKLE-QPKLALPY 147
Query: 156 YKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRD 215
++A+ N + +A + G+ D A+ + +P A+A N GV Y ++
Sbjct: 148 LQRAVELNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKE 207
Query: 216 NLDKAVECYQMALSIKPN 233
N +KA+E A+ I+P+
Sbjct: 208 NREKALEMLDKAIDIQPD 225
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/178 (22%), Positives = 71/178 (39%), Gaps = 7/178 (3%)
Query: 69 SELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIA 128
SE Y+ A + KA E A Y N + + +LE A+A Y++ L +
Sbjct: 34 SEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELD------ 87
Query: 129 KNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIV 188
++ A A G ++ + ++KAL D Y LG ++ + +A+
Sbjct: 88 -SSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALP 146
Query: 189 FYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYT 246
+ + A N + EA G+ + LD+A+ + P + + N GV Y
Sbjct: 147 YLQRAVELNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYA 204
Score = 37.7 bits (86), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 40/196 (20%), Positives = 75/196 (38%), Gaps = 7/196 (3%)
Query: 106 GDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWH 165
GD E A + + + + I N A L+ + ++ + +A+Y KAL +
Sbjct: 37 GDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVN-------ELERALAFYDKALELDSS 89
Query: 166 YADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQ 225
A A Y G Y + A +E A + LG + + A+ Q
Sbjct: 90 AATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQ 149
Query: 226 MALSIKPNFSQSLNNLGVVYTVQGXXXXXXXXXXXXXXXNPTYAEAYNNLGVLYRDAGSI 285
A+ + N +++ G+ +G +P +A+A+ N GV Y +
Sbjct: 150 RAVELNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENR 209
Query: 286 SLAIDAYEQCLKIDPD 301
A++ ++ + I PD
Sbjct: 210 EKALEMLDKAIDIQPD 225
>pdb|3LCA|A Chain A, Structure Of Tom71 Complexed With Hsp70 Ssa1 C Terminal
Tail Indicating Conformational Plasticity
Length = 533
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/212 (20%), Positives = 75/212 (35%), Gaps = 23/212 (10%)
Query: 30 LGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERP 89
L +L N+Q+ + + +A+ ++P Y P YY+ G +Y L Y A ++KA P
Sbjct: 278 LALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNP 337
Query: 90 MYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDI 149
Y + + +G + A + P A LTD GD
Sbjct: 338 ENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTD-------RGDF 390
Query: 150 NQGVAYYKKALYYNWHYADAMYNLGVAYGEML----------------KFDMAIVFYELA 193
+ + Y A +G G+ KF+ AI A
Sbjct: 391 DTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKA 450
Query: 194 FHFNPHCAEACNNLGVIYKDRDNLDKAVECYQ 225
+P +A L + + +D+A+E ++
Sbjct: 451 CELDPRSEQAKIGLAQLKLQMEKIDEAIELFE 482
Score = 37.7 bits (86), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 37/73 (50%)
Query: 166 YADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQ 225
YA + N G + F+ AI +Y+ A +P+ +N+ Y +L+K +E
Sbjct: 20 YAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTT 79
Query: 226 MALSIKPNFSQSL 238
AL IKP+ S++L
Sbjct: 80 KALEIKPDHSKAL 92
>pdb|3FP2|A Chain A, Crystal Structure Of Tom71 Complexed With Hsp82 C-Terminal
Fragment
pdb|3FP3|A Chain A, Crystal Structure Of Tom71
pdb|3FP4|A Chain A, Crystal Structure Of Tom71 Complexed With Ssa1 C-Terminal
Fragment
Length = 537
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/212 (20%), Positives = 75/212 (35%), Gaps = 23/212 (10%)
Query: 30 LGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERP 89
L +L N+Q+ + + +A+ ++P Y P YY+ G +Y L Y A ++KA P
Sbjct: 282 LALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNP 341
Query: 90 MYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDI 149
Y + + +G + A + P A LTD GD
Sbjct: 342 ENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTD-------RGDF 394
Query: 150 NQGVAYYKKALYYNWHYADAMYNLGVAYGEML----------------KFDMAIVFYELA 193
+ + Y A +G G+ KF+ AI A
Sbjct: 395 DTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKA 454
Query: 194 FHFNPHCAEACNNLGVIYKDRDNLDKAVECYQ 225
+P +A L + + +D+A+E ++
Sbjct: 455 CELDPRSEQAKIGLAQLKLQMEKIDEAIELFE 486
Score = 37.4 bits (85), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 37/73 (50%)
Query: 166 YADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQ 225
YA + N G + F+ AI +Y+ A +P+ +N+ Y +L+K +E
Sbjct: 24 YAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTT 83
Query: 226 MALSIKPNFSQSL 238
AL IKP+ S++L
Sbjct: 84 KALEIKPDHSKAL 96
>pdb|3SZ7|A Chain A, Crystal Structure Of The Sgt2 Tpr Domain From Aspergillus
Fumigatus
Length = 164
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 50/116 (43%), Gaps = 6/116 (5%)
Query: 214 RDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGXXXXXXXXXXXXXXXNPTYAEAYN 273
R KA++ Y ALSI P L+N Y+ G +P Y++A++
Sbjct: 24 RKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWS 83
Query: 274 NLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHR 329
LG+ D A +AYE+ ++ + N G + AM E K+ EA+R
Sbjct: 84 RLGLARFDMADYKGAKEAYEKGIEAE---GNGGSD---AMKRGLETTKRKIEEANR 133
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 35/81 (43%)
Query: 44 IQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYK 103
I Y +AL I P N YS Q++ A E A + P Y++A+ +G+
Sbjct: 31 IDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARF 90
Query: 104 NRGDLESAIACYERCLAVSPN 124
+ D + A YE+ + N
Sbjct: 91 DMADYKGAKEAYEKGIEAEGN 111
>pdb|3ASG|A Chain A, Mama D159k Mutant 2
pdb|3ASG|B Chain B, Mama D159k Mutant 2
pdb|3ASH|A Chain A, Mama D159k Mutant 1
pdb|3ASH|B Chain B, Mama D159k Mutant 1
Length = 186
Score = 39.3 bits (90), Expect = 0.008, Method: Composition-based stats.
Identities = 32/153 (20%), Positives = 65/153 (42%), Gaps = 5/153 (3%)
Query: 174 GVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPN 233
G+++ + ++ A++ E + + + +LG+ Y +D+ E + +L+ P+
Sbjct: 15 GISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPD 74
Query: 234 FSQSLNNLGVVYTVQGXXXXXXXXXXXXXXXNPTYAEAYNNLGVLYRDAGSISLAIDAYE 293
+ LG+ Y NP LGV ++ G AID+++
Sbjct: 75 NVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALKNLGRFDEAIDSFK 134
Query: 294 QCLKIDPDSRNAGQ-NRLLAMNYINEG-HDDKL 324
L + P N G+ +R +A +Y G H++ L
Sbjct: 135 IALGLRP---NEGKVHRAIAFSYEQMGRHEEAL 164
Score = 37.7 bits (86), Expect = 0.022, Method: Composition-based stats.
Identities = 30/130 (23%), Positives = 51/130 (39%), Gaps = 7/130 (5%)
Query: 30 LGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERP 89
LG + G G + +L P LG+ Y ++ +YD A+ K A P
Sbjct: 48 LGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANP 107
Query: 90 MYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDI 149
+ +GV KN G + AI ++ L + PN +A + +G
Sbjct: 108 INFNVRFRLGVALKNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRH------- 160
Query: 150 NQGVAYYKKA 159
+ + ++KKA
Sbjct: 161 EEALPHFKKA 170
Score = 37.4 bits (85), Expect = 0.030, Method: Composition-based stats.
Identities = 27/101 (26%), Positives = 48/101 (47%), Gaps = 12/101 (11%)
Query: 139 LGTKVKLEGDINQGVAYYKKALYYNWHYADAMYN------LGVAYGEMLKFDMAIVFYEL 192
LG G +++G +++L ADA N LG+ Y ++ K+D+A+
Sbjct: 48 LGIAYVKTGAVDRGTELLERSL------ADAPDNVKVATVLGLTYVQVQKYDLAVPLLIK 101
Query: 193 AFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPN 233
NP LGV K+ D+A++ +++AL ++PN
Sbjct: 102 VAEANPINFNVRFRLGVALKNLGRFDEAIDSFKIALGLRPN 142
Score = 32.0 bits (71), Expect = 1.3, Method: Composition-based stats.
Identities = 34/167 (20%), Positives = 69/167 (41%), Gaps = 7/167 (4%)
Query: 61 YYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLA 120
Y + G+ +++ +Y A+ E+ + ++G+ Y G ++ ER LA
Sbjct: 11 YRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLA 70
Query: 121 VSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEM 180
+P+ N+ +A T LG + V K N + + LGVA +
Sbjct: 71 DAPD------NVKVA-TVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALKNL 123
Query: 181 LKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMA 227
+FD AI +++A P+ + + Y+ ++A+ ++ A
Sbjct: 124 GRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKA 170
>pdb|1ELW|A Chain A, Crystal Structure Of The Tpr1 Domain Of Hop In Complex
With A Hsc70 Peptide
pdb|1ELW|B Chain B, Crystal Structure Of The Tpr1 Domain Of Hop In Complex
With A Hsc70 Peptide
Length = 118
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 39/100 (39%), Gaps = 4/100 (4%)
Query: 27 LTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTAL--GCYEKA 84
L + G GN D +Q Y EA+K+DPH Y N Y++ Y A GC K
Sbjct: 7 LKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGC--KT 64
Query: 85 ALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPN 124
+P + + Y + E A YE L N
Sbjct: 65 VDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEAN 104
>pdb|3AS8|A Chain A, Mama Msr-1 P41212
pdb|3ASF|A Chain A, Mama Msr-1 C2
pdb|3ASF|B Chain B, Mama Msr-1 C2
Length = 186
Score = 38.1 bits (87), Expect = 0.018, Method: Composition-based stats.
Identities = 33/153 (21%), Positives = 64/153 (41%), Gaps = 5/153 (3%)
Query: 174 GVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPN 233
G+++ + ++ A+V E + + E +LG+ Y +D+ E + +++ P+
Sbjct: 15 GISHAKAGRYSEAVVMLEQVYDADAFDVEVALHLGIAYVKTGAVDRGTELLERSIADAPD 74
Query: 234 FSQSLNNLGVVYTVQGXXXXXXXXXXXXXXXNPTYAEAYNNLGVLYRDAGSISLAIDAYE 293
+ LG+ Y NP LGV + G AID+++
Sbjct: 75 NIKVATVLGLTYVQVQKYDLAVPLLVKVAEANPVNFNVRFRLGVALDNLGRFDEAIDSFK 134
Query: 294 QCLKIDPDSRNAGQ-NRLLAMNYINEG-HDDKL 324
L + P N G+ +R +A +Y G H++ L
Sbjct: 135 IALGLRP---NEGKVHRAIAYSYEQMGSHEEAL 164
Score = 35.0 bits (79), Expect = 0.14, Method: Composition-based stats.
Identities = 32/141 (22%), Positives = 65/141 (46%), Gaps = 14/141 (9%)
Query: 100 VIYKNRGDLESAIACY-ERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKK 158
V Y+++G + Y E + + ++ ++ +AL LG G +++G ++
Sbjct: 9 VYYRDKGISHAKAGRYSEAVVMLEQVYDADAFDVEVAL-HLGIAYVKTGAVDRGTELLER 67
Query: 159 ALYYNWHYADAMYN------LGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYK 212
++ ADA N LG+ Y ++ K+D+A+ NP LGV
Sbjct: 68 SI------ADAPDNIKVATVLGLTYVQVQKYDLAVPLLVKVAEANPVNFNVRFRLGVALD 121
Query: 213 DRDNLDKAVECYQMALSIKPN 233
+ D+A++ +++AL ++PN
Sbjct: 122 NLGRFDEAIDSFKIALGLRPN 142
Score = 35.0 bits (79), Expect = 0.16, Method: Composition-based stats.
Identities = 23/96 (23%), Positives = 42/96 (43%), Gaps = 7/96 (7%)
Query: 64 LGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSP 123
LG+ Y ++ +YD A+ K A P+ +GV N G + AI ++ L + P
Sbjct: 82 LGLTYVQVQKYDLAVPLLVKVAEANPVNFNVRFRLGVALDNLGRFDEAIDSFKIALGLRP 141
Query: 124 NFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKA 159
N +A + +G+ + + ++KKA
Sbjct: 142 NEGKVHRAIAYSYEQMGSH-------EEALPHFKKA 170
Score = 32.7 bits (73), Expect = 0.76, Method: Composition-based stats.
Identities = 34/167 (20%), Positives = 70/167 (41%), Gaps = 7/167 (4%)
Query: 61 YYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLA 120
Y + G+ +++ +Y A+ E+ E ++G+ Y G ++ ER +A
Sbjct: 11 YRDKGISHAKAGRYSEAVVMLEQVYDADAFDVEVALHLGIAYVKTGAVDRGTELLERSIA 70
Query: 121 VSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEM 180
+P+ N+ +A T LG + V K N + + LGVA +
Sbjct: 71 DAPD------NIKVA-TVLGLTYVQVQKYDLAVPLLVKVAEANPVNFNVRFRLGVALDNL 123
Query: 181 LKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMA 227
+FD AI +++A P+ + + Y+ + ++A+ ++ A
Sbjct: 124 GRFDEAIDSFKIALGLRPNEGKVHRAIAYSYEQMGSHEEALPHFKKA 170
>pdb|3ASD|A Chain A, Mama R50e Mutant
Length = 200
Score = 37.7 bits (86), Expect = 0.026, Method: Composition-based stats.
Identities = 32/153 (20%), Positives = 64/153 (41%), Gaps = 5/153 (3%)
Query: 174 GVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPN 233
G+++ + ++ A++ E + + + +LG+ Y +D+ E + +L+ P+
Sbjct: 15 GISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPD 74
Query: 234 FSQSLNNLGVVYTVQGXXXXXXXXXXXXXXXNPTYAEAYNNLGVLYRDAGSISLAIDAYE 293
+ LG+ Y NP LGV + G AID+++
Sbjct: 75 NVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFK 134
Query: 294 QCLKIDPDSRNAGQ-NRLLAMNYINEG-HDDKL 324
L + P N G+ +R +A +Y G H++ L
Sbjct: 135 IALGLRP---NEGKVHRAIAFSYEQMGRHEEAL 164
Score = 35.8 bits (81), Expect = 0.11, Method: Composition-based stats.
Identities = 29/130 (22%), Positives = 50/130 (38%), Gaps = 7/130 (5%)
Query: 30 LGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERP 89
LG + G G + +L P LG+ Y ++ +YD A+ K A P
Sbjct: 48 LGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANP 107
Query: 90 MYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDI 149
+ +GV N G + AI ++ L + PN +A + +G
Sbjct: 108 INFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRH------- 160
Query: 150 NQGVAYYKKA 159
+ + ++KKA
Sbjct: 161 EEALPHFKKA 170
Score = 35.0 bits (79), Expect = 0.14, Method: Composition-based stats.
Identities = 26/101 (25%), Positives = 47/101 (46%), Gaps = 12/101 (11%)
Query: 139 LGTKVKLEGDINQGVAYYKKALYYNWHYADAMYN------LGVAYGEMLKFDMAIVFYEL 192
LG G +++G +++L ADA N LG+ Y ++ K+D+A+
Sbjct: 48 LGIAYVKTGAVDRGTELLERSL------ADAPDNVKVATVLGLTYVQVQKYDLAVPLLIK 101
Query: 193 AFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPN 233
NP LGV + D+A++ +++AL ++PN
Sbjct: 102 VAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPN 142
Score = 32.0 bits (71), Expect = 1.4, Method: Composition-based stats.
Identities = 34/167 (20%), Positives = 69/167 (41%), Gaps = 7/167 (4%)
Query: 61 YYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLA 120
Y + G+ +++ +Y A+ E+ + ++G+ Y G ++ ER LA
Sbjct: 11 YEDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLA 70
Query: 121 VSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEM 180
+P+ N+ +A T LG + V K N + + LGVA +
Sbjct: 71 DAPD------NVKVA-TVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNL 123
Query: 181 LKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMA 227
+FD AI +++A P+ + + Y+ ++A+ ++ A
Sbjct: 124 GRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKA 170
>pdb|3AS4|A Chain A, Mama Amb-1 C2221
pdb|3AS5|A Chain A, Mama Amb-1 P212121
pdb|3AS5|B Chain B, Mama Amb-1 P212121
Length = 186
Score = 37.7 bits (86), Expect = 0.026, Method: Composition-based stats.
Identities = 32/153 (20%), Positives = 64/153 (41%), Gaps = 5/153 (3%)
Query: 174 GVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPN 233
G+++ + ++ A++ E + + + +LG+ Y +D+ E + +L+ P+
Sbjct: 15 GISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPD 74
Query: 234 FSQSLNNLGVVYTVQGXXXXXXXXXXXXXXXNPTYAEAYNNLGVLYRDAGSISLAIDAYE 293
+ LG+ Y NP LGV + G AID+++
Sbjct: 75 NVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFK 134
Query: 294 QCLKIDPDSRNAGQ-NRLLAMNYINEG-HDDKL 324
L + P N G+ +R +A +Y G H++ L
Sbjct: 135 IALGLRP---NEGKVHRAIAFSYEQMGRHEEAL 164
Score = 35.8 bits (81), Expect = 0.11, Method: Composition-based stats.
Identities = 29/130 (22%), Positives = 50/130 (38%), Gaps = 7/130 (5%)
Query: 30 LGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERP 89
LG + G G + +L P LG+ Y ++ +YD A+ K A P
Sbjct: 48 LGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANP 107
Query: 90 MYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDI 149
+ +GV N G + AI ++ L + PN +A + +G
Sbjct: 108 INFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRH------- 160
Query: 150 NQGVAYYKKA 159
+ + ++KKA
Sbjct: 161 EEALPHFKKA 170
Score = 35.0 bits (79), Expect = 0.14, Method: Composition-based stats.
Identities = 26/101 (25%), Positives = 47/101 (46%), Gaps = 12/101 (11%)
Query: 139 LGTKVKLEGDINQGVAYYKKALYYNWHYADAMYN------LGVAYGEMLKFDMAIVFYEL 192
LG G +++G +++L ADA N LG+ Y ++ K+D+A+
Sbjct: 48 LGIAYVKTGAVDRGTELLERSL------ADAPDNVKVATVLGLTYVQVQKYDLAVPLLIK 101
Query: 193 AFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPN 233
NP LGV + D+A++ +++AL ++PN
Sbjct: 102 VAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPN 142
Score = 32.0 bits (71), Expect = 1.2, Method: Composition-based stats.
Identities = 34/167 (20%), Positives = 69/167 (41%), Gaps = 7/167 (4%)
Query: 61 YYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLA 120
Y + G+ +++ +Y A+ E+ + ++G+ Y G ++ ER LA
Sbjct: 11 YRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLA 70
Query: 121 VSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEM 180
+P+ N+ +A T LG + V K N + + LGVA +
Sbjct: 71 DAPD------NVKVA-TVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNL 123
Query: 181 LKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMA 227
+FD AI +++A P+ + + Y+ ++A+ ++ A
Sbjct: 124 GRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKA 170
>pdb|2PL2|A Chain A, Crystal Structure Of Ttc0263: A Thermophilic Tpr Protein
In Thermus Thermophilus Hb27
pdb|2PL2|B Chain B, Crystal Structure Of Ttc0263: A Thermophilic Tpr Protein
In Thermus Thermophilus Hb27
Length = 217
Score = 37.7 bits (86), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 45/93 (48%), Gaps = 13/93 (13%)
Query: 38 GNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKA-ALE-----RPMY 91
G + + +A +++P YAP + G+VY+ L + D A ++A ALE R
Sbjct: 98 GYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEIRSAL 157
Query: 92 AEAYCNMGVIYKNRGDLESAIACYERCLAVSPN 124
AE Y +M G L+ A+A Y + L +P
Sbjct: 158 AELYLSM-------GRLDEALAQYAKALEQAPK 183
Score = 32.3 bits (72), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 42/175 (24%), Positives = 69/175 (39%), Gaps = 5/175 (2%)
Query: 63 NLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVS 122
LGV L +YD AL +E+A E P EA + G + A+ + +A +
Sbjct: 10 RLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVART 69
Query: 123 PNF---EIAKNNMAIAL-TDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYG 178
P + + + +AL + + +G + Q ++ K A N YA G+ Y
Sbjct: 70 PRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYA 129
Query: 179 EMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPN 233
+ + D A + A E + L +Y LD+A+ Y AL P
Sbjct: 130 LLGERDKAEASLKQALALE-DTPEIRSALAELYLSMGRLDEALAQYAKALEQAPK 183
>pdb|1XNF|A Chain A, Crystal Structure Of E.Coli Tpr-Protein Nlpi
pdb|1XNF|B Chain B, Crystal Structure Of E.Coli Tpr-Protein Nlpi
Length = 275
Score = 37.4 bits (85), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 39/90 (43%), Gaps = 3/90 (3%)
Query: 235 SQSLNNLGVVYTVQGXXXXXXXXXXXXXXXNPTYAEAYNNLGVLYRDAGSISLAIDAYEQ 294
+Q L GV+Y G P E +N LG+ AG+ A +A++
Sbjct: 43 AQLLYERGVLYDSLGLRALARNDFSQALAIRPDXPEVFNYLGIYLTQAGNFDAAYEAFDS 102
Query: 295 CLKIDPDSRNAGQNRLLAMNYINEGHDDKL 324
L++DP A NR +A+ Y G DKL
Sbjct: 103 VLELDPTYNYAHLNRGIALYY---GGRDKL 129
Score = 36.6 bits (83), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 40/95 (42%), Gaps = 1/95 (1%)
Query: 54 DPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIA 113
D A Y GV+Y L A + +A RP E + +G+ G+ ++A
Sbjct: 39 DDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDXPEVFNYLGIYLTQAGNFDAAYE 98
Query: 114 CYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGD 148
++ L + P + A N IAL G + KL D
Sbjct: 99 AFDSVLELDPTYNYAHLNRGIALY-YGGRDKLAQD 132
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 32/138 (23%), Positives = 50/138 (36%), Gaps = 6/138 (4%)
Query: 208 GVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGXXXXXXXXXXXXXXXNPT 267
GV+Y A + AL+I+P+ + N LG+ T G +PT
Sbjct: 50 GVLYDSLGLRALARNDFSQALAIRPDXPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPT 109
Query: 268 YAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEA 327
Y A+ N G+ G LA D + DP+ LA ++E ++ +
Sbjct: 110 YNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQ 169
Query: 328 H------RDWGKRFMRLY 339
H WG + Y
Sbjct: 170 HFEKSDKEQWGWNIVEFY 187
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 31/78 (39%)
Query: 167 ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQM 226
A +Y GV Y + +A + A P E N LG+ N D A E +
Sbjct: 43 AQLLYERGVLYDSLGLRALARNDFSQALAIRPDXPEVFNYLGIYLTQAGNFDAAYEAFDS 102
Query: 227 ALSIKPNFSQSLNNLGVV 244
L + P ++ + N G+
Sbjct: 103 VLELDPTYNYAHLNRGIA 120
>pdb|2LNI|A Chain A, Solution Nmr Structure Of Stress-Induced-Phosphoprotein 1
Sti1 From Homo Sapiens, Northeast Structural Genomics
Consortium Target Hr4403e
Length = 133
Score = 37.4 bits (85), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 23/97 (23%), Positives = 44/97 (45%)
Query: 23 LAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYE 82
LA+++ + G G+ ++ Y EA+K +P A Y N Y++L+++ AL E
Sbjct: 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCE 74
Query: 83 KAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCL 119
+ P + + Y + D A+ Y++ L
Sbjct: 75 ECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKAL 111
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 22/109 (20%), Positives = 48/109 (44%)
Query: 131 NMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFY 190
++A+ + + G + +GD Q + +Y +A+ N A N Y ++L+F +A+
Sbjct: 14 DLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDC 73
Query: 191 ELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLN 239
E P + + + KA++ YQ AL + + ++ +
Sbjct: 74 EECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAAD 122
>pdb|3RO3|A Chain A, Crystal Structure Of LgnMINSCUTEABLE COMPLEX
Length = 164
Score = 36.2 bits (82), Expect = 0.068, Method: Composition-based stats.
Identities = 37/144 (25%), Positives = 65/144 (45%), Gaps = 13/144 (9%)
Query: 29 DLGTSLKLAGNTQDGIQKYYEALKIDPHYAP------AYYNLGVVYSELMQYDTALGCYE 82
+LG + L GN +D + + + L I + AY NLG Y L +++TA Y+
Sbjct: 14 NLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYK 73
Query: 83 KAAL------ERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIAL 136
K L +R + A++ ++G Y D E AI + + LA++ + + A
Sbjct: 74 KTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELK-DRIGEGRAC 132
Query: 137 TDLGTKVKLEGDINQGVAYYKKAL 160
LG G+ +Q + + +K L
Sbjct: 133 WSLGNAYTALGNHDQAMHFAEKHL 156
Score = 29.6 bits (65), Expect = 7.0, Method: Composition-based stats.
Identities = 35/168 (20%), Positives = 58/168 (34%), Gaps = 35/168 (20%)
Query: 88 RPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEG 147
R A+ N+G + G+ A+ +E+ L ++ F K IA ++LG G
Sbjct: 5 RAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFG-DKAAERIAYSNLGNAYIFLG 63
Query: 148 DINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNL 207
+ YYKK L D A++C +L
Sbjct: 64 EFETASEYYKKTLLLARQLKDRAVE----------------------------AQSCYSL 95
Query: 208 GVIYKDRDNLDKAVECYQMALSIKPNFSQSLN------NLGVVYTVQG 249
G Y + +KA++ + L+I + +LG YT G
Sbjct: 96 GNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALG 143
>pdb|3EDT|B Chain B, Crystal Structure Of The Mutated S328n Hklc2 Tpr Domain
pdb|3EDT|D Chain D, Crystal Structure Of The Mutated S328n Hklc2 Tpr Domain
pdb|3EDT|F Chain F, Crystal Structure Of The Mutated S328n Hklc2 Tpr Domain
pdb|3EDT|H Chain H, Crystal Structure Of The Mutated S328n Hklc2 Tpr Domain
Length = 283
Score = 35.8 bits (81), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 44/99 (44%), Gaps = 16/99 (16%)
Query: 167 ADAMYNLGVAYGEMLKFDMAIVFYELAFH--------FNPHCAEACNNLGVIYKDRDNLD 218
A + NL V YG+ K+ A + A F+P A+ NNL ++ +++ +
Sbjct: 85 AATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAE 144
Query: 219 KAVECYQMALSI--------KPNFSQSLNNLGVVYTVQG 249
+ Y+ AL I PN +++ NNL Y QG
Sbjct: 145 EVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQG 183
>pdb|4GA1|A Chain A, Structure Of The N-Terminal Domain Of Nup358
Length = 150
Score = 35.4 bits (80), Expect = 0.13, Method: Composition-based stats.
Identities = 21/94 (22%), Positives = 45/94 (47%)
Query: 139 LGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNP 198
LG+ + + D+ + +A + + + + Y E ++D+A + +
Sbjct: 3 LGSXRRSKADVERYIASVQGSTPSPRQKSXKGFYFAKLYXEAKEYDLAKKYICTYINVQE 62
Query: 199 HCAEACNNLGVIYKDRDNLDKAVECYQMALSIKP 232
+A LG++Y+ +N DKAVECY+ ++ + P
Sbjct: 63 RDPKAHRFLGLLYELEENTDKAVECYRRSVELNP 96
>pdb|2XPI|A Chain A, Crystal Structure Of ApcC HETERO-Tetramer Cut9-Hcn1
pdb|2XPI|D Chain D, Crystal Structure Of ApcC HETERO-Tetramer Cut9-Hcn1
Length = 597
Score = 35.0 bits (79), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 29/121 (23%), Positives = 52/121 (42%), Gaps = 7/121 (5%)
Query: 25 IVLTDLGTSLKLAGNTQDGIQKYYEALKI-------DPHYAPAYYNLGVVYSELMQYDTA 77
++L +LG + Q I + AL + + +A + NLG Y +L YD A
Sbjct: 476 LLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAA 535
Query: 78 LGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALT 137
+ + L A + + ++Y ++ AI LA+SPN +A + + AL
Sbjct: 536 IDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRALE 595
Query: 138 D 138
+
Sbjct: 596 E 596
>pdb|2VQ2|A Chain A, Crystal Structure Of Pilw, Widely Conserved Type Iv Pilus
Biogenesis Factor
Length = 225
Score = 35.0 bits (79), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 48/189 (25%), Positives = 64/189 (33%), Gaps = 28/189 (14%)
Query: 3 VASYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYY 62
AS AL +DP E +V ++ LK+ Q+ + +AL I P A
Sbjct: 28 TASIEDALKSDPK----NELAWLVRAEIYQYLKVNDKAQESFR---QALSIKPDSAEINN 80
Query: 63 NLGVVYSELMQYDTALGCYEKAALERPMYAEAYC---NMGVIYKNRGDLESAIACYERCL 119
N G + Y AL P Y Y N G+ +G A A +R L
Sbjct: 81 NYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSL 140
Query: 120 AVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKK-----------ALYYNWHYAD 168
A P F A +L L G + Y+KK L W A
Sbjct: 141 AAQPQF-------PPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAK 193
Query: 169 AMYNLGVAY 177
A+ N AY
Sbjct: 194 ALGNAQAAY 202
>pdb|4GA2|A Chain A, Structure Of The N-Terminal Domain Of Nup358
Length = 150
Score = 34.3 bits (77), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 31/57 (54%)
Query: 177 YGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPN 233
Y E ++D+A + + +A LG++Y+ +N DKAVECY+ ++ + P
Sbjct: 41 YYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTDKAVECYRRSVELNPT 97
>pdb|4GA0|A Chain A, Structure Of The N-Terminal Domain Of Nup358
Length = 150
Score = 34.3 bits (77), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 31/57 (54%)
Query: 177 YGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPN 233
Y E ++D+A + + +A LG++Y+ +N DKAVECY+ ++ + P
Sbjct: 41 YYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTDKAVECYRRSVELNPT 97
>pdb|3CEQ|A Chain A, The Tpr Domain Of Human Kinesin Light Chain 2 (Hklc2)
pdb|3CEQ|B Chain B, The Tpr Domain Of Human Kinesin Light Chain 2 (Hklc2)
Length = 283
Score = 33.9 bits (76), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 44/99 (44%), Gaps = 16/99 (16%)
Query: 167 ADAMYNLGVAYGEMLKFDMAIVFYELAFH--------FNPHCAEACNNLGVIYKDRDNLD 218
A + NL V YG+ K+ A + A F+P A+ +NL ++ +++ +
Sbjct: 85 AATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLSNLALLCQNQGKAE 144
Query: 219 KAVECYQMALSI--------KPNFSQSLNNLGVVYTVQG 249
+ Y+ AL I PN +++ NNL Y QG
Sbjct: 145 EVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQG 183
>pdb|4ABN|A Chain A, Crystal Structure Of Full Length Mouse Strap (Ttc5)
pdb|4ABN|B Chain B, Crystal Structure Of Full Length Mouse Strap (Ttc5)
Length = 474
Score = 33.5 bits (75), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 39/93 (41%), Gaps = 17/93 (18%)
Query: 49 EALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDL 108
+AL + P Y+P L KA P EA+ +G +Y +GD+
Sbjct: 110 KALNVTPDYSPEAEVL----------------LSKAVKLEPELVEAWNQLGEVYWKKGDV 153
Query: 109 ESAIACYERCLAVSPNFEIAKNNMAIALTDLGT 141
SA C+ L N +++ N+++ L L T
Sbjct: 154 TSAHTCFSGALTHCKN-KVSLQNLSMVLRQLQT 185
>pdb|3SF4|A Chain A, Crystal Structure Of The Complex Between The Conserved
Cell Polarity Proteins Inscuteable And Lgn
pdb|3SF4|B Chain B, Crystal Structure Of The Complex Between The Conserved
Cell Polarity Proteins Inscuteable And Lgn
pdb|3SF4|C Chain C, Crystal Structure Of The Complex Between The Conserved
Cell Polarity Proteins Inscuteable And Lgn
Length = 406
Score = 33.1 bits (74), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 57/126 (45%), Gaps = 16/126 (12%)
Query: 140 GTKVKLEGDINQGVAYYKKALYY---NWHYADAMYN-LGVAYGEMLKFDMAIVFYE---- 191
G ++ GD GV++++ A+ + A+Y+ LG AY + + A+ ++
Sbjct: 16 GERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLT 75
Query: 192 LAFHFNPHCAEA--CNNLGVIYKDRDNLDKAVECYQMALSI------KPNFSQSLNNLGV 243
LA EA NLG K N D+A+ C Q L I K +++L NLG
Sbjct: 76 LARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGN 135
Query: 244 VYTVQG 249
VY +G
Sbjct: 136 VYHAKG 141
Score = 33.1 bits (74), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 51/109 (46%), Gaps = 12/109 (11%)
Query: 29 DLGTSLKLAGNTQDGIQKYYEALKIDPHYAP------AYYNLGVVYSELMQYDTALGCYE 82
+LG + L GN +D + + + L I + AY NLG Y L +++TA Y+
Sbjct: 192 NLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYK 251
Query: 83 KAAL------ERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNF 125
K L +R + A++ ++G Y D E AI + + LA++
Sbjct: 252 KTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQEL 300
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 55/236 (23%), Positives = 91/236 (38%), Gaps = 45/236 (19%)
Query: 58 APAYYNLGVVYSELMQYDTALGCYEKAA-LERPM-----YAEAYCNMGVIYKNRGD---- 107
A A NLG L +D A+ C ++ + R + A A N+G +Y +G
Sbjct: 87 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGC 146
Query: 108 ----------------LESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQ 151
L++A+ YE L++ + A +LG L G+
Sbjct: 147 PGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALG-DRAAQGRAFGNLGNTHYLLGNFRD 205
Query: 152 GVAYYKKALYYNWHYAD------AMYNLGVAYGEMLKFDMAIVFYE----LAFHFNPHCA 201
V +++ L + D A NLG AY + +F+ A +Y+ LA
Sbjct: 206 AVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAV 265
Query: 202 EA--CNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLN------NLGVVYTVQG 249
EA C +LG Y + +KA++ + L+I + + +LG YT G
Sbjct: 266 EAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALG 321
>pdb|2Y4T|A Chain A, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
pdb|2Y4T|B Chain B, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
pdb|2Y4T|C Chain C, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
Length = 450
Score = 32.7 bits (73), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 42/96 (43%)
Query: 29 DLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALER 88
+LG L AG D + +++ A+ DP AYY V+ + + AL K +
Sbjct: 31 ELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK 90
Query: 89 PMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPN 124
+ A G + +G L+ A +++ L +P+
Sbjct: 91 MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPS 126
>pdb|4G2V|A Chain A, Structure Complex Of Lgn Binding With Frmpd1
Length = 340
Score = 32.7 bits (73), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 37/147 (25%), Positives = 65/147 (44%), Gaps = 13/147 (8%)
Query: 26 VLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAP------AYYNLGVVYSELMQYDTALG 79
+LG + L GN +D + + + L I + AY NLG Y L +++TA
Sbjct: 187 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASE 246
Query: 80 CYEKAAL------ERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMA 133
Y+K L +R + A++ ++G Y D E AI + + LA++ + +
Sbjct: 247 YYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELK-DRIGEG 305
Query: 134 IALTDLGTKVKLEGDINQGVAYYKKAL 160
A LG G+ +Q + + +K L
Sbjct: 306 RACWSLGNAYTALGNHDQAMHFAEKHL 332
Score = 32.7 bits (73), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 57/126 (45%), Gaps = 16/126 (12%)
Query: 140 GTKVKLEGDINQGVAYYKKALYY---NWHYADAMYN-LGVAYGEMLKFDMAIVFYE---- 191
G ++ GD GV++++ A+ + A+Y+ LG AY + + A+ ++
Sbjct: 14 GERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLT 73
Query: 192 LAFHFNPHCAEA--CNNLGVIYKDRDNLDKAVECYQMALSI------KPNFSQSLNNLGV 243
LA EA NLG K N D+A+ C Q L I K +++L NLG
Sbjct: 74 LARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGN 133
Query: 244 VYTVQG 249
VY +G
Sbjct: 134 VYHAKG 139
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 55/236 (23%), Positives = 90/236 (38%), Gaps = 45/236 (19%)
Query: 58 APAYYNLGVVYSELMQYDTALGCYEKAA-LERPM-----YAEAYCNMGVIYKNRGD---- 107
A A NLG L +D A+ C ++ + R + A A N+G +Y +G
Sbjct: 85 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGC 144
Query: 108 ----------------LESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQ 151
L++A+ YE L++ + A +LG L G+
Sbjct: 145 PGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALG-DRAAQGRAFGNLGNTHYLLGNFRD 203
Query: 152 GVAYYKKALYYNWHYAD------AMYNLGVAYGEMLKFDMAIVFYE----LAFHFNPHCA 201
V +++ L + D A NLG AY + +F+ A +Y+ LA
Sbjct: 204 AVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAV 263
Query: 202 EA--CNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLN------NLGVVYTVQG 249
EA C +LG Y + +KA++ + L+I + +LG YT G
Sbjct: 264 EAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALG 319
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 68/277 (24%), Positives = 105/277 (37%), Gaps = 51/277 (18%)
Query: 19 AAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPH----YAPAYYNLGVVYSELMQY 74
+A CL + L G L +G+ + G+ + A+++ + Y LG Y L Y
Sbjct: 4 SASCLELALE--GERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDY 61
Query: 75 DTALG-CYEKAALERPM-----YAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIA 128
AL + L R + A+A N+G K G+ + AI C +R L +S
Sbjct: 62 AKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELN-D 120
Query: 129 KNNMAIALTDLGTKVKLEGD--------------------INQGVAYYKKALYYNWHYAD 168
K A AL +LG +G + V Y++ L D
Sbjct: 121 KVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGD 180
Query: 169 ------AMYNLGVAYGEMLKFDMAIVFYE----LAFHFNPHCAE--ACNNLGVIYKDRDN 216
A NLG + + F A++ +E +A F AE A +NLG Y
Sbjct: 181 RAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGE 240
Query: 217 LDKAVECYQMALSIKPNF------SQSLNNLGVVYTV 247
+ A E Y+ L + +QS +LG YT+
Sbjct: 241 FETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTL 277
>pdb|3RO2|A Chain A, Structures Of The LgnNUMA COMPLEX
Length = 338
Score = 32.7 bits (73), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 52/113 (46%), Gaps = 12/113 (10%)
Query: 26 VLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAP------AYYNLGVVYSELMQYDTALG 79
+LG + L GN +D + + + L I + AY NLG Y L +++TA
Sbjct: 185 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASE 244
Query: 80 CYEKAAL------ERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFE 126
Y+K L +R + A++ ++G Y D E AI + + LA++ +
Sbjct: 245 YYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELK 297
Score = 32.3 bits (72), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 57/126 (45%), Gaps = 16/126 (12%)
Query: 140 GTKVKLEGDINQGVAYYKKALYY---NWHYADAMYN-LGVAYGEMLKFDMAIVFYE---- 191
G ++ GD GV++++ A+ + A+Y+ LG AY + + A+ ++
Sbjct: 12 GERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLT 71
Query: 192 LAFHFNPHCAEA--CNNLGVIYKDRDNLDKAVECYQMALSI------KPNFSQSLNNLGV 243
LA EA NLG K N D+A+ C Q L I K +++L NLG
Sbjct: 72 LARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGN 131
Query: 244 VYTVQG 249
VY +G
Sbjct: 132 VYHAKG 137
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 55/236 (23%), Positives = 90/236 (38%), Gaps = 45/236 (19%)
Query: 58 APAYYNLGVVYSELMQYDTALGCYEKAA-LERPM-----YAEAYCNMGVIYKNRGD---- 107
A A NLG L +D A+ C ++ + R + A A N+G +Y +G
Sbjct: 83 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGC 142
Query: 108 ----------------LESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQ 151
L++A+ YE L++ + A +LG L G+
Sbjct: 143 PGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALG-DRAAQGRAFGNLGNTHYLLGNFRD 201
Query: 152 GVAYYKKALYYNWHYAD------AMYNLGVAYGEMLKFDMAIVFYE----LAFHFNPHCA 201
V +++ L + D A NLG AY + +F+ A +Y+ LA
Sbjct: 202 AVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAV 261
Query: 202 EA--CNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLN------NLGVVYTVQG 249
EA C +LG Y + +KA++ + L+I + +LG YT G
Sbjct: 262 EAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALG 317
Score = 30.0 bits (66), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 68/277 (24%), Positives = 105/277 (37%), Gaps = 51/277 (18%)
Query: 19 AAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPH----YAPAYYNLGVVYSELMQY 74
+A CL + L G L +G+ + G+ + A+++ + Y LG Y L Y
Sbjct: 2 SASCLELALE--GERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDY 59
Query: 75 DTALG-CYEKAALERPM-----YAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIA 128
AL + L R + A+A N+G K G+ + AI C +R L +S
Sbjct: 60 AKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELN-D 118
Query: 129 KNNMAIALTDLGTKVKLEGD--------------------INQGVAYYKKALYYNWHYAD 168
K A AL +LG +G + V Y++ L D
Sbjct: 119 KVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGD 178
Query: 169 ------AMYNLGVAYGEMLKFDMAIVFYE----LAFHFNPHCAE--ACNNLGVIYKDRDN 216
A NLG + + F A++ +E +A F AE A +NLG Y
Sbjct: 179 RAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGE 238
Query: 217 LDKAVECYQMALSIKPNF------SQSLNNLGVVYTV 247
+ A E Y+ L + +QS +LG YT+
Sbjct: 239 FETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTL 275
>pdb|1IHG|A Chain A, Bovine Cyclophilin 40, Monoclinic Form
pdb|1IIP|A Chain A, Bovine Cyclophilin 40, Tetragonal Form
Length = 370
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 39/94 (41%), Gaps = 11/94 (11%)
Query: 1 MLVASYHKALSADPSYKPAAE----------CLAIVLTDLGTSLKLAGNTQDGIQKYYEA 50
M + Y K L + AAE L+ VL LK++ + Q + EA
Sbjct: 241 MAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMS-DWQGAVDSCLEA 299
Query: 51 LKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKA 84
L+IDP A Y + L +YD AL +KA
Sbjct: 300 LEIDPSNTKALYRRAQGWQGLKEYDQALADLKKA 333
>pdb|3NF1|A Chain A, Crystal Structure Of The Tpr Domain Of Kinesin Light Chain
1
Length = 311
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 43/116 (37%), Gaps = 16/116 (13%)
Query: 197 NPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIK--------PNFSQSLNNLGVVYTVQ 248
+P A NNL V+Y R +A + AL I+ P+ ++ LNNL ++ Q
Sbjct: 107 HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQ 166
Query: 249 GX--------XXXXXXXXXXXXXXNPTYAEAYNNLGVLYRDAGSISLAIDAYEQCL 296
G +P A+ NNL Y G A Y++ L
Sbjct: 167 GKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEIL 222
>pdb|4A1S|A Chain A, Crystallographic Structure Of The Pins:insc Complex
pdb|4A1S|B Chain B, Crystallographic Structure Of The Pins:insc Complex
Length = 411
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 59/134 (44%), Gaps = 16/134 (11%)
Query: 132 MAIALTDLGTKVKLEGDINQGVAYYKKALYY---NWHYADAMYN-LGVAYGEMLKFDMAI 187
M + L G ++ GD GVA+++ A+ + A+Y+ LG AY + ++ A+
Sbjct: 47 MCLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAM 106
Query: 188 VFYE----LAFHFNPHCAEA--CNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLN-- 239
+++ LA N EA NLG K D+A C + L++ L+
Sbjct: 107 QYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEG 166
Query: 240 ----NLGVVYTVQG 249
NLG VY +G
Sbjct: 167 RALYNLGNVYHAKG 180
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 69/272 (25%), Positives = 106/272 (38%), Gaps = 50/272 (18%)
Query: 22 CLAIVLTDLGTSLKLAGNTQDGIQKYYEALK-----------IDPHYAPAYYNLGVVYSE 70
CL + L G L AG+ + G+ + A++ I AY+ LG Y++
Sbjct: 48 CLELALE--GERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGD-YNK 104
Query: 71 LMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKN 130
MQY K+ +R A++ N+G K G + A C ER L ++ +
Sbjct: 105 AMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLG-DRL 163
Query: 131 NMAIALTDLG----TKVKLEGDINQG-------------VAYYKKALYYNWHYAD----- 168
+ AL +LG K K G N G V +Y++ L D
Sbjct: 164 SEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQG 223
Query: 169 -AMYNLGVAYGEMLKFDMAIVFYE----LAFHFNPHCAE--ACNNLGVIYKDRDNLDKAV 221
A NLG Y + F AI ++ +A F AE A +NLG + + A
Sbjct: 224 RACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAA 283
Query: 222 ECYQMALSIKPNF------SQSLNNLGVVYTV 247
E Y+ L++ +QS +LG YT+
Sbjct: 284 EHYKRTLALAVELGEREVEAQSCYSLGNTYTL 315
>pdb|2KCL|A Chain A, Solution Nmr Structure Of Tetratricopeptide Repeat
Domain Protein Sru_0103 From Salinibacter Ruber,
Northeast Structural Genomics Consortium (Nesg) Target
Srr115c
pdb|2KCV|A Chain A, Solution Nmr Structure Of Tetratricopeptide Repeat
Domain Protein Sru_0103 From Salinibacter Ruber,
Northeast Structural Genomics Consortium (Nesg) Target
Srr115c
Length = 99
Score = 32.0 bits (71), Expect = 1.4, Method: Composition-based stats.
Identities = 14/46 (30%), Positives = 23/46 (50%)
Query: 39 NTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKA 84
N + + E ++ DP Y YY+LG +Y L + D A+ Y +
Sbjct: 21 NASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQG 66
>pdb|4I17|A Chain A, Crystal Structure Of A Hypothetical Protein (Bf2334) From
Bacteroides Fragilis Nctc 9343 At 1.50 A Resolution
Length = 228
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 60/153 (39%), Gaps = 5/153 (3%)
Query: 27 LTDLGTSLKLAGNTQDGIQKYYEALKI-DPHYAPAYYNLGVVYSELMQYDTALGCYEKAA 85
L + G A N +KY E LK+ + + YN GV + +Y A ++ A
Sbjct: 10 LKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAI 69
Query: 86 LERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKL 145
+ A AY Y++ + + IA + P + AI G K +
Sbjct: 70 KKNYNLANAYIGKSAAYRDXKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQ 129
Query: 146 EGDINQGVAYYKKA---LYYNWHYADAMYNLGV 175
G+I + YK A W DA+Y+LGV
Sbjct: 130 AGNIEKAEENYKHATDVTSKKWK-TDALYSLGV 161
>pdb|4GCN|A Chain A, N-Terminal Domain Of Stress-Induced Protein-1 (Sti-1) From
C.Elegans
pdb|4GCN|B Chain B, N-Terminal Domain Of Stress-Induced Protein-1 (Sti-1) From
C.Elegans
Length = 127
Score = 32.0 bits (71), Expect = 1.4, Method: Composition-based stats.
Identities = 27/113 (23%), Positives = 48/113 (42%), Gaps = 7/113 (6%)
Query: 24 AIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEK 83
AI DLG + + + Y +A+++DP Y N VY E ++ + EK
Sbjct: 8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEK 67
Query: 84 AA-------LERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAK 129
A + + A+A G ++ + DL A+ + R L+ + E+ K
Sbjct: 68 AVEVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRDPELVK 120
Score = 30.0 bits (66), Expect = 5.1, Method: Composition-based stats.
Identities = 27/109 (24%), Positives = 44/109 (40%), Gaps = 7/109 (6%)
Query: 128 AKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAI 187
A + AIA DLG + D + +Y KA+ + N Y E KF +
Sbjct: 3 AMTDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECV 62
Query: 188 VFYELAFHFNPHC-------AEACNNLGVIYKDRDNLDKAVECYQMALS 229
F E A A+A + G ++ +++L AV+ + +LS
Sbjct: 63 QFCEKAVEVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLS 111
>pdb|3MA5|A Chain A, Crystal Structure Of The Tetratricopeptide Repeat Domain
Protein Q2s6c5_salrd From Salinibacter Ruber. Northeast
Structural Genomics Consortium Target Srr115c.
pdb|3MA5|B Chain B, Crystal Structure Of The Tetratricopeptide Repeat Domain
Protein Q2s6c5_salrd From Salinibacter Ruber. Northeast
Structural Genomics Consortium Target Srr115c.
pdb|3MA5|C Chain C, Crystal Structure Of The Tetratricopeptide Repeat Domain
Protein Q2s6c5_salrd From Salinibacter Ruber. Northeast
Structural Genomics Consortium Target Srr115c.
pdb|3MA5|D Chain D, Crystal Structure Of The Tetratricopeptide Repeat Domain
Protein Q2s6c5_salrd From Salinibacter Ruber. Northeast
Structural Genomics Consortium Target Srr115c
Length = 100
Score = 32.0 bits (71), Expect = 1.4, Method: Composition-based stats.
Identities = 14/46 (30%), Positives = 23/46 (50%)
Query: 39 NTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKA 84
N + + E ++ DP Y YY+LG +Y L + D A+ Y +
Sbjct: 22 NASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQG 67
>pdb|2KAT|A Chain A, Solution Structure Of Protein Bpp2914 From Bordetella
Parapertussis. Northeast Structural Genomics Consortium
Target Bpr206
Length = 115
Score = 32.0 bits (71), Expect = 1.4, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 34/62 (54%), Gaps = 2/62 (3%)
Query: 62 YNLGVVYSELMQYDTALGCYEKAALE-RPMYAEAYCNMGVIYKNRGDLESAIACYERCLA 120
+ LG Y+E Q+D AL + +AAL+ P Y+ A+ +G + +GD A +E LA
Sbjct: 23 FTLGKTYAEHEQFDAALP-HLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81
Query: 121 VS 122
+
Sbjct: 82 AA 83
>pdb|2Y4U|A Chain A, Crystal Structure Of Human P58(Ipk) In Space Group P312
Length = 450
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 41/96 (42%)
Query: 29 DLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALER 88
+LG L AG D + +++ A+ DP AYY V+ + AL K +
Sbjct: 31 ELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAXGKSKAALPDLTKVIQLK 90
Query: 89 PMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPN 124
+ A G + +G L+ A +++ L +P+
Sbjct: 91 XDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPS 126
>pdb|1OUV|A Chain A, Helicobacter Cysteine Rich Protein C (Hcpc)
Length = 273
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 50/118 (42%), Gaps = 14/118 (11%)
Query: 136 LTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAY----GEMLKFDMAIVFYE 191
L LG K E D Q Y++KA + +NLGV Y G A FY
Sbjct: 9 LVGLGAKSYKEKDFTQAKKYFEKAC--DLKENSGCFNLGVLYYQGQGVEKNLKKAASFYA 66
Query: 192 LAFHFNPHCAEACNNLGVIYKD----RDNLDKAVECYQMALSIKPNFSQSLNNLGVVY 245
A N + C+ LG +Y N +KA++ Y A +K +++ +LG +Y
Sbjct: 67 KACDLNY--SNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK--YAEGCASLGGIY 120
>pdb|1WAO|1 Chain 1, Pp5 Structure
pdb|1WAO|2 Chain 2, Pp5 Structure
pdb|1WAO|3 Chain 3, Pp5 Structure
pdb|1WAO|4 Chain 4, Pp5 Structure
Length = 477
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 41/93 (44%)
Query: 37 AGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYC 96
A + ++ I+ Y +A++++P A Y N + Y Y ALG +A Y + Y
Sbjct: 19 AKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYY 78
Query: 97 NMGVIYKNRGDLESAIACYERCLAVSPNFEIAK 129
G +A+ YE + V P+ + AK
Sbjct: 79 RRAASNMALGKFRAALRDYETVVKVKPHDKDAK 111
>pdb|2FI7|A Chain A, Crystal Structure Of Pilf : Functional Implication In The
Type 4 Pilus Biogenesis In Pseudomonas Aeruginosa
pdb|2FI7|B Chain B, Crystal Structure Of Pilf : Functional Implication In The
Type 4 Pilus Biogenesis In Pseudomonas Aeruginosa
Length = 265
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 33/144 (22%), Positives = 59/144 (40%), Gaps = 11/144 (7%)
Query: 93 EAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIAL-TDLGTKVKLEGDINQ 151
+AY +G+ Y RG+ E A + L + P+ A +A+ T++ K+ E
Sbjct: 51 DAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADE----- 105
Query: 152 GVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFH--FNPHCAEACNNLGV 209
Y+KAL + A + N G E +++ A A P + NLG+
Sbjct: 106 ---EYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGL 162
Query: 210 IYKDRDNLDKAVECYQMALSIKPN 233
+ +A E ++ +L + N
Sbjct: 163 VSLQMKKPAQAKEYFEKSLRLNRN 186
Score = 29.6 bits (65), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 38/95 (40%), Gaps = 3/95 (3%)
Query: 30 LGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERP 89
LG GNT+ +AL+IDP A A+ L VV+ M+ A Y KA
Sbjct: 56 LGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDS 115
Query: 90 MYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPN 124
A N G + E A Y+R L S +
Sbjct: 116 RNARVLNNYGGFLYEQKRYEEA---YQRLLEASQD 147
>pdb|3IEG|A Chain A, Crystal Structure Of P58(Ipk) Tpr Domain At 2.5 A
pdb|3IEG|B Chain B, Crystal Structure Of P58(Ipk) Tpr Domain At 2.5 A
Length = 359
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 41/96 (42%)
Query: 29 DLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALER 88
+LG L AG D + +++ A+ DP AYY V+ + AL K +
Sbjct: 8 ELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAXGKSKAALPDLTKVIALK 67
Query: 89 PMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPN 124
+ A G + +G L+ A +++ L +P+
Sbjct: 68 XDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPS 103
>pdb|2GW1|A Chain A, Crystal Structure Of The Yeast Tom70
pdb|2GW1|B Chain B, Crystal Structure Of The Yeast Tom70
Length = 514
Score = 30.8 bits (68), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 34/74 (45%), Gaps = 1/74 (1%)
Query: 165 HYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECY 224
YA A+ + G + K+D AI +Y A +NL Y +L K VE
Sbjct: 4 KYALALKDKGNQFFRNKKYDDAIKYYNWALELKEDPV-FYSNLSACYVSVGDLKKVVEMS 62
Query: 225 QMALSIKPNFSQSL 238
AL +KP++S+ L
Sbjct: 63 TKALELKPDYSKVL 76
>pdb|2F1Y|A Chain A, Crystal Structure Of The Traf-Like Domain Of HauspUSP7
Bound To A Mdm2 Peptide
Length = 159
Score = 30.4 bits (67), Expect = 3.9, Method: Composition-based stats.
Identities = 16/54 (29%), Positives = 24/54 (44%), Gaps = 12/54 (22%)
Query: 324 LFEAHRDWGKRFMRLYSQYTSWDNTKDPERPLVIGYVSPDYFTHSVSYFIEAPL 377
F DWG +S + +W DPE+ G++ D T V F++A L
Sbjct: 110 FFHKENDWG------FSNFMAWSEVTDPEK----GFIDDDKVTFEV--FVQADL 151
>pdb|1YY6|A Chain A, The Crystal Strucure Of The N-Terminal Domain Of HauspUSP7
Complexed With An Ebna1 Peptide
pdb|1YZE|A Chain A, Crystal Structure Of The N-Terminal Domain Of Usp7HAUSP.
pdb|1YZE|B Chain B, Crystal Structure Of The N-Terminal Domain Of Usp7HAUSP.
pdb|1YZE|C Chain C, Crystal Structure Of The N-Terminal Domain Of Usp7HAUSP.
pdb|2FOJ|A Chain A, The Crystal Strucure Of The N-Terminal Domain Of HauspUSP7
Complexed With P53 Peptide 364-367
pdb|2FOO|A Chain A, The Crystal Strucure Of The N-Terminal Domain Of HauspUSP7
Complexed With P53 Peptide 359-362
pdb|2FOP|A Chain A, The Crystal Strucure Of The N-Terminal Domain Of HauspUSP7
Complexed With Mdm2 Peptide 147-150
pdb|3MQR|A Chain A, Crystal Structure Of The Usp7:hdmx(Ahss) Complex
pdb|3MQS|C Chain C, Crystal Structure Of The Usp7:hdm2(Psts) Complex
Length = 155
Score = 30.4 bits (67), Expect = 4.0, Method: Composition-based stats.
Identities = 15/53 (28%), Positives = 22/53 (41%), Gaps = 10/53 (18%)
Query: 324 LFEAHRDWGKRFMRLYSQYTSWDNTKDPERPLVIGYVSPDYFTHSVSYFIEAP 376
F DWG +S + +W DPE+ G++ D T V +AP
Sbjct: 108 FFHKENDWG------FSNFMAWSEVTDPEK----GFIDDDKVTFEVFVQADAP 150
>pdb|2XXN|A Chain A, Structure Of The Virf4-Hausp Traf Domain Complex
Length = 143
Score = 30.4 bits (67), Expect = 4.0, Method: Composition-based stats.
Identities = 15/53 (28%), Positives = 22/53 (41%), Gaps = 10/53 (18%)
Query: 324 LFEAHRDWGKRFMRLYSQYTSWDNTKDPERPLVIGYVSPDYFTHSVSYFIEAP 376
F DWG +S + +W DPE+ G++ D T V +AP
Sbjct: 96 FFHKENDWG------FSNFMAWSEVTDPEK----GFIDDDKVTFEVFVQADAP 138
>pdb|2F1X|A Chain A, Crystal Structure Of The Traf-Like Domain Of HauspUSP7
Bound To A P53 Peptide
pdb|2F1X|B Chain B, Crystal Structure Of The Traf-Like Domain Of HauspUSP7
Bound To A P53 Peptide
Length = 161
Score = 30.4 bits (67), Expect = 4.0, Method: Composition-based stats.
Identities = 15/53 (28%), Positives = 22/53 (41%), Gaps = 10/53 (18%)
Query: 324 LFEAHRDWGKRFMRLYSQYTSWDNTKDPERPLVIGYVSPDYFTHSVSYFIEAP 376
F DWG +S + +W DPE+ G++ D T V +AP
Sbjct: 110 FFHKENDWG------FSNFMAWSEVTDPEK----GFIDDDKVTFEVFVQADAP 152
>pdb|2F1W|A Chain A, Crystal Structure Of The Traf-Like Domain Of HauspUSP7
Length = 158
Score = 30.4 bits (67), Expect = 4.0, Method: Composition-based stats.
Identities = 15/53 (28%), Positives = 22/53 (41%), Gaps = 10/53 (18%)
Query: 324 LFEAHRDWGKRFMRLYSQYTSWDNTKDPERPLVIGYVSPDYFTHSVSYFIEAP 376
F DWG +S + +W DPE+ G++ D T V +AP
Sbjct: 110 FFHKENDWG------FSNFMAWSEVTDPEK----GFIDDDKVTFEVFVQADAP 152
>pdb|4GCO|A Chain A, Central Domain Of Stress-Induced Protein-1 (Sti-1) From
C.Elegans
Length = 126
Score = 30.4 bits (67), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 26/107 (24%), Positives = 41/107 (38%)
Query: 23 LAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYE 82
LA + G G+ ++ Y EA+K DP A Y N ++LM++ AL +
Sbjct: 12 LAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCD 71
Query: 83 KAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAK 129
+ + Y + A YE L V P+ E A+
Sbjct: 72 TCIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAR 118
>pdb|2KC7|A Chain A, Solution Nmr Structure Of Bacteroides Fragilis Protein
Bf1650. Northeast Structural Genomics Consortium Target
Bfr218
Length = 99
Score = 29.6 bits (65), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 270 EAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYIN 317
EAY +G YR G A++ Y+ ++++PDS A Q R + M+ +N
Sbjct: 36 EAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSP-ALQARKMVMDILN 82
>pdb|2L6J|A Chain A, Tah1 Complexed By Meevd
Length = 111
Score = 29.6 bits (65), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 20/85 (23%), Positives = 36/85 (42%), Gaps = 1/85 (1%)
Query: 104 NRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYN 163
+G A+ CY++ + P + +N A+AL LG + QG+ Y A +
Sbjct: 16 KQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVA 75
Query: 164 WHYADAMYNLGVAYGEMLKFDMAIV 188
+ Y L +A G + + +V
Sbjct: 76 IR-SKLQYRLELAQGAVGSVQIPVV 99
>pdb|2HO1|A Chain A, Functional Characterization Of Pseudomonas Aeruginosa Pilf
pdb|2HO1|B Chain B, Functional Characterization Of Pseudomonas Aeruginosa Pilf
Length = 252
Score = 29.6 bits (65), Expect = 7.4, Method: Composition-based stats.
Identities = 28/93 (30%), Positives = 36/93 (38%), Gaps = 3/93 (3%)
Query: 30 LGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERP 89
LG GNT+ +AL+IDP A A+ L VV+ + A Y KA
Sbjct: 43 LGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEXEPKLADEEYRKALASDS 102
Query: 90 MYAEAYCNMGVIYKNRGDLESAIACYERCLAVS 122
A N G + E A Y+R L S
Sbjct: 103 RNARVLNNYGGFLYEQKRYEEA---YQRLLEAS 132
>pdb|3UPV|A Chain A, Tpr2b-Domain:phsp70-Complex Of Yeast Sti1
Length = 126
Score = 29.3 bits (64), Expect = 8.0, Method: Composition-based stats.
Identities = 15/54 (27%), Positives = 25/54 (46%)
Query: 42 DGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAY 95
+ ++ Y E +K P A Y N ++LM + A+ KA + P + AY
Sbjct: 22 NAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAY 75
>pdb|1HH8|A Chain A, The Active N-Terminal Region Of P67phox: Structure At 1.8
Angstrom Resolution And Biochemical Characterizations Of
The A128v Mutant Implicated In Chronic Granulomatous
Disease
Length = 213
Score = 29.3 bits (64), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 13/59 (22%), Positives = 31/59 (52%)
Query: 29 DLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALE 87
++G + N + + + ++ D H A AY+ G++Y + +YD A+ ++A ++
Sbjct: 42 NIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQ 100
>pdb|1ELR|A Chain A, Crystal Structure Of The Tpr2a Domain Of Hop In Complex
With The Hsp90 Peptide Meevd
Length = 131
Score = 29.3 bits (64), Expect = 8.6, Method: Composition-based stats.
Identities = 21/87 (24%), Positives = 32/87 (36%)
Query: 74 YDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMA 133
+DTAL Y+KA P N +Y +GD E+ + V +A
Sbjct: 20 FDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIA 79
Query: 134 IALTDLGTKVKLEGDINQGVAYYKKAL 160
A +G E + +Y K+L
Sbjct: 80 KAYARIGNSYFKEEKYKDAIHFYNKSL 106
>pdb|2KCK|A Chain A, Nmr Solution Structure Of The Northeast Structural
Genomics Consortium (Nesg) Target Mrr121a
Length = 112
Score = 29.3 bits (64), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 20/27 (74%)
Query: 276 GVLYRDAGSISLAIDAYEQCLKIDPDS 302
GVL DAG+ + +ID +E+ +++DP+
Sbjct: 13 GVLQYDAGNYTESIDLFEKAIQLDPEE 39
>pdb|3ESK|A Chain A, Structure Of Hop Tpr2a Domain In Complex With The
Non-Cognate Hsc70 Peptide Ligand
Length = 129
Score = 29.3 bits (64), Expect = 9.2, Method: Composition-based stats.
Identities = 21/87 (24%), Positives = 32/87 (36%)
Query: 74 YDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMA 133
+DTAL Y+KA P N +Y +GD E+ + V +A
Sbjct: 20 FDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIA 79
Query: 134 IALTDLGTKVKLEGDINQGVAYYKKAL 160
A +G E + +Y K+L
Sbjct: 80 KAYARIGNSYFKEEKYKDAIHFYNKSL 106
>pdb|1E96|B Chain B, Structure Of The RacP67PHOX COMPLEX
Length = 203
Score = 29.3 bits (64), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 13/59 (22%), Positives = 31/59 (52%)
Query: 29 DLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALE 87
++G + N + + + ++ D H A AY+ G++Y + +YD A+ ++A ++
Sbjct: 42 NIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQ 100
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,441,096
Number of Sequences: 62578
Number of extensions: 979784
Number of successful extensions: 2957
Number of sequences better than 100.0: 88
Number of HSP's better than 100.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 29
Number of HSP's that attempted gapping in prelim test: 2509
Number of HSP's gapped (non-prelim): 350
length of query: 788
length of database: 14,973,337
effective HSP length: 107
effective length of query: 681
effective length of database: 8,277,491
effective search space: 5636971371
effective search space used: 5636971371
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)