Query 003891
Match_columns 788
No_of_seqs 1359 out of 3769
Neff 9.2
Searched_HMMs 46136
Date Thu Mar 28 13:52:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003891.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003891hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4626 O-linked N-acetylgluco 100.0 4E-146 8E-151 1139.9 57.0 714 2-736 203-965 (966)
2 COG3914 Spy Predicted O-linked 100.0 4E-102 9E-107 815.7 50.2 550 148-717 46-619 (620)
3 PF13844 Glyco_transf_41: Glyc 100.0 6.9E-95 1.5E-99 775.4 28.9 351 355-713 1-468 (468)
4 KOG4626 O-linked N-acetylgluco 100.0 4.4E-37 9.5E-42 322.8 30.2 320 2-330 135-481 (966)
5 PRK15179 Vi polysaccharide bio 100.0 3.4E-30 7.4E-35 294.9 48.0 529 152-710 71-692 (694)
6 TIGR00990 3a0801s09 mitochondr 100.0 7.3E-27 1.6E-31 272.8 42.7 312 2-330 146-567 (615)
7 PRK15174 Vi polysaccharide exp 100.0 4.2E-26 9.2E-31 265.7 42.9 313 2-331 61-378 (656)
8 TIGR00990 3a0801s09 mitochondr 100.0 3.5E-26 7.5E-31 267.2 42.1 281 21-302 124-500 (615)
9 PRK11447 cellulose synthase su 100.0 3.9E-26 8.5E-31 283.6 43.6 320 2-330 288-696 (1157)
10 PRK15174 Vi polysaccharide exp 100.0 2E-25 4.3E-30 260.1 39.8 289 2-304 95-387 (656)
11 TIGR02917 PEP_TPR_lipo putativ 99.9 1.4E-24 3E-29 266.2 43.8 299 28-330 571-896 (899)
12 PRK11447 cellulose synthase su 99.9 2.4E-24 5.3E-29 267.6 43.6 323 2-331 322-737 (1157)
13 KOG1126 DNA-binding cell divis 99.9 9.3E-26 2E-30 242.6 24.1 274 24-304 353-626 (638)
14 TIGR02917 PEP_TPR_lipo putativ 99.9 2.7E-23 5.9E-28 254.7 44.0 317 2-328 450-793 (899)
15 PRK11788 tetratricopeptide rep 99.9 5.9E-23 1.3E-27 227.4 40.3 302 26-335 37-348 (389)
16 PRK10049 pgaA outer membrane p 99.9 2.1E-22 4.6E-27 239.7 41.2 322 2-334 68-456 (765)
17 PRK11788 tetratricopeptide rep 99.9 3.9E-22 8.4E-27 220.8 37.0 286 2-297 54-346 (389)
18 KOG0547 Translocase of outer m 99.9 2.4E-22 5.2E-27 207.9 30.7 282 20-301 111-494 (606)
19 PRK09782 bacteriophage N4 rece 99.9 6.6E-22 1.4E-26 235.4 37.6 283 3-303 461-745 (987)
20 KOG0547 Translocase of outer m 99.9 3.9E-22 8.4E-27 206.3 28.4 313 2-330 134-562 (606)
21 KOG1126 DNA-binding cell divis 99.9 1.6E-22 3.6E-27 217.8 24.7 295 22-325 315-611 (638)
22 KOG1155 Anaphase-promoting com 99.9 5.4E-21 1.2E-25 196.9 34.0 298 26-323 166-525 (559)
23 PRK10049 pgaA outer membrane p 99.9 1E-20 2.2E-25 225.3 40.9 320 2-331 34-419 (765)
24 KOG1155 Anaphase-promoting com 99.9 2.8E-21 6.1E-26 199.0 29.8 267 28-301 266-539 (559)
25 PRK09782 bacteriophage N4 rece 99.9 8.4E-21 1.8E-25 226.0 37.0 254 43-307 460-715 (987)
26 KOG2002 TPR-containing nuclear 99.9 2.1E-20 4.6E-25 208.1 32.8 327 2-330 255-671 (1018)
27 KOG1173 Anaphase-promoting com 99.9 1E-19 2.2E-24 192.2 29.6 277 25-308 245-528 (611)
28 KOG2002 TPR-containing nuclear 99.9 7.5E-19 1.6E-23 195.9 35.0 297 1-309 217-536 (1018)
29 PF13429 TPR_15: Tetratricopep 99.9 1.9E-21 4.1E-26 204.8 13.9 261 29-298 13-277 (280)
30 KOG0624 dsRNA-activated protei 99.9 5.5E-19 1.2E-23 175.4 30.2 283 27-309 41-381 (504)
31 PRK12370 invasion protein regu 99.8 8.6E-19 1.9E-23 201.4 32.7 217 73-298 276-502 (553)
32 KOG0548 Molecular co-chaperone 99.8 1.5E-18 3.2E-23 183.2 30.6 305 2-313 21-470 (539)
33 PRK12370 invasion protein regu 99.8 7.6E-19 1.6E-23 201.8 29.9 252 2-263 280-534 (553)
34 KOG1125 TPR repeat-containing 99.8 2.1E-19 4.7E-24 190.9 21.7 240 28-267 289-530 (579)
35 KOG0495 HAT repeat protein [RN 99.8 1.4E-17 3E-22 177.8 35.3 308 2-326 535-872 (913)
36 KOG1129 TPR repeat-containing 99.8 7.7E-19 1.7E-23 173.3 23.7 289 11-309 168-469 (478)
37 KOG1173 Anaphase-promoting com 99.8 1.8E-18 3.8E-23 183.0 27.7 263 2-278 263-532 (611)
38 KOG2076 RNA polymerase III tra 99.8 1.1E-17 2.5E-22 185.6 35.0 286 2-296 158-510 (895)
39 TIGR00540 hemY_coli hemY prote 99.8 1.7E-17 3.6E-22 183.9 35.6 294 27-330 87-395 (409)
40 KOG1174 Anaphase-promoting com 99.8 6.5E-18 1.4E-22 171.7 28.5 286 8-308 223-510 (564)
41 KOG0548 Molecular co-chaperone 99.8 7E-18 1.5E-22 178.1 29.4 288 26-314 4-437 (539)
42 PRK14574 hmsH outer membrane p 99.8 7.1E-17 1.5E-21 188.9 39.3 323 2-327 53-506 (822)
43 PF13429 TPR_15: Tetratricopep 99.8 1.3E-19 2.9E-24 190.7 13.7 261 61-332 11-275 (280)
44 TIGR00540 hemY_coli hemY prote 99.8 1.8E-16 3.9E-21 175.7 38.8 268 27-298 121-399 (409)
45 PRK11189 lipoprotein NlpI; Pro 99.8 1.8E-17 4E-22 175.0 29.1 236 38-284 40-286 (296)
46 PRK15490 Vi polysaccharide bio 99.8 1.9E-17 4.1E-22 181.4 28.2 267 422-711 269-575 (578)
47 KOG2003 TPR repeat-containing 99.8 7.7E-17 1.7E-21 165.1 30.0 274 28-308 423-699 (840)
48 PRK11189 lipoprotein NlpI; Pro 99.8 3.5E-17 7.6E-22 172.8 28.8 227 71-308 39-276 (296)
49 PRK10747 putative protoheme IX 99.8 2.3E-16 5.1E-21 173.8 36.4 269 27-299 121-391 (398)
50 KOG1129 TPR repeat-containing 99.8 1.6E-18 3.5E-23 171.1 17.0 244 27-278 226-472 (478)
51 KOG1125 TPR repeat-containing 99.8 5.5E-18 1.2E-22 180.2 20.3 234 62-302 289-531 (579)
52 PRK10747 putative protoheme IX 99.8 7.5E-16 1.6E-20 169.8 37.9 295 22-330 82-386 (398)
53 KOG0550 Molecular chaperone (D 99.8 1.2E-17 2.5E-22 170.4 20.2 284 21-306 46-357 (486)
54 TIGR02521 type_IV_pilW type IV 99.8 1.7E-16 3.6E-21 161.4 28.6 201 58-299 31-233 (234)
55 KOG0495 HAT repeat protein [RN 99.8 7.8E-16 1.7E-20 164.6 33.7 291 3-308 570-890 (913)
56 TIGR02521 type_IV_pilW type IV 99.8 2.3E-16 5E-21 160.4 28.6 201 22-227 29-229 (234)
57 COG3063 PilF Tfp pilus assembl 99.8 2E-16 4.2E-21 150.6 24.9 205 93-304 36-242 (250)
58 PRK14574 hmsH outer membrane p 99.8 2.7E-15 5.9E-20 175.8 39.6 301 27-329 37-474 (822)
59 COG3063 PilF Tfp pilus assembl 99.8 2.7E-16 5.9E-21 149.6 25.2 211 20-235 31-241 (250)
60 KOG0624 dsRNA-activated protei 99.8 3.5E-16 7.7E-21 155.6 26.5 262 2-277 57-383 (504)
61 KOG2003 TPR repeat-containing 99.8 3.7E-16 8.1E-21 160.1 26.7 248 37-292 469-716 (840)
62 KOG4162 Predicted calmodulin-b 99.8 4.5E-16 9.7E-21 170.4 28.0 296 2-304 463-789 (799)
63 COG2956 Predicted N-acetylgluc 99.7 7.9E-15 1.7E-19 145.6 34.0 267 29-304 40-317 (389)
64 KOG1840 Kinesin light chain [C 99.7 3.5E-16 7.5E-21 171.5 27.1 244 54-297 195-478 (508)
65 PLN02789 farnesyltranstransfer 99.7 5E-16 1.1E-20 163.6 26.4 206 71-281 50-267 (320)
66 KOG1840 Kinesin light chain [C 99.7 6.3E-16 1.4E-20 169.5 27.1 241 24-264 199-479 (508)
67 PLN02789 farnesyltranstransfer 99.7 3.1E-15 6.7E-20 157.6 30.5 212 30-248 43-268 (320)
68 COG2956 Predicted N-acetylgluc 99.7 7.5E-15 1.6E-19 145.7 29.7 259 2-271 54-318 (389)
69 KOG1174 Anaphase-promoting com 99.7 1.3E-14 2.9E-19 147.8 27.6 287 29-325 203-491 (564)
70 KOG2076 RNA polymerase III tra 99.7 3.3E-14 7.2E-19 158.4 33.0 294 27-329 142-507 (895)
71 PLN03218 maturation of RBCL 1; 99.7 3.2E-13 6.9E-18 162.8 44.0 291 27-330 475-779 (1060)
72 PLN02949 transferase, transfer 99.7 2.2E-14 4.7E-19 159.9 28.4 177 526-714 268-459 (463)
73 KOG0550 Molecular chaperone (D 99.7 2.8E-15 6E-20 153.3 17.8 260 2-276 68-361 (486)
74 KOG1127 TPR repeat-containing 99.7 1.4E-14 2.9E-19 161.8 24.0 306 2-309 511-890 (1238)
75 TIGR03088 stp2 sugar transfera 99.6 2.4E-14 5.1E-19 157.7 25.3 173 523-712 191-373 (374)
76 KOG1156 N-terminal acetyltrans 99.6 3.4E-13 7.3E-18 145.4 32.7 289 3-305 27-441 (700)
77 PLN03218 maturation of RBCL 1; 99.6 1.4E-12 3E-17 157.3 42.1 293 27-331 440-745 (1060)
78 cd03796 GT1_PIG-A_like This fa 99.6 2E-14 4.4E-19 159.4 23.0 178 523-714 190-370 (398)
79 KOG4162 Predicted calmodulin-b 99.6 4.8E-13 1E-17 147.0 32.1 312 2-328 376-777 (799)
80 KOG1130 Predicted G-alpha GTPa 99.6 5.6E-15 1.2E-19 150.3 15.9 271 27-298 20-344 (639)
81 PLN03081 pentatricopeptide (PP 99.6 5E-13 1.1E-17 158.9 34.4 289 27-331 262-554 (697)
82 PRK15427 colanic acid biosynth 99.6 1.1E-14 2.4E-19 161.0 18.4 173 524-711 220-405 (406)
83 cd05804 StaR_like StaR_like; a 99.6 2E-12 4.4E-17 141.2 35.1 307 13-334 2-336 (355)
84 PLN02871 UDP-sulfoquinovose:DA 99.6 2.7E-14 5.8E-19 161.5 20.3 342 352-719 56-442 (465)
85 KOG1130 Predicted G-alpha GTPa 99.6 1.7E-14 3.7E-19 146.8 15.7 281 3-287 37-373 (639)
86 KOG1127 TPR repeat-containing 99.6 5.6E-14 1.2E-18 157.0 20.9 304 2-322 477-867 (1238)
87 cd03801 GT1_YqgM_like This fam 99.6 4.5E-14 9.7E-19 153.5 18.3 339 357-710 2-374 (374)
88 cd05804 StaR_like StaR_like; a 99.6 2.6E-12 5.6E-17 140.4 31.9 271 54-328 2-287 (355)
89 cd03792 GT1_Trehalose_phosphor 99.6 4.5E-13 9.7E-18 147.4 25.1 335 356-711 1-371 (372)
90 TIGR03302 OM_YfiO outer membra 99.6 6.1E-13 1.3E-17 136.2 23.4 118 53-170 28-152 (235)
91 cd03820 GT1_amsD_like This fam 99.6 1.8E-13 3.8E-18 147.8 20.3 319 356-706 1-347 (348)
92 PLN03077 Protein ECB2; Provisi 99.6 5.1E-12 1.1E-16 154.0 35.4 261 58-330 424-716 (857)
93 cd03822 GT1_ecORF704_like This 99.6 2.7E-13 5.9E-18 148.1 22.0 337 356-710 1-366 (366)
94 KOG1156 N-terminal acetyltrans 99.6 2.1E-12 4.4E-17 139.4 27.6 268 27-301 10-286 (700)
95 TIGR03302 OM_YfiO outer membra 99.6 5E-13 1.1E-17 136.9 22.4 187 22-232 31-234 (235)
96 PLN03081 pentatricopeptide (PP 99.6 2.3E-12 5E-17 153.2 30.9 261 26-298 292-557 (697)
97 PRK15359 type III secretion sy 99.5 2.2E-13 4.8E-18 127.3 15.2 122 188-312 14-135 (144)
98 cd03807 GT1_WbnK_like This fam 99.5 8.4E-13 1.8E-17 143.7 22.3 331 357-710 2-365 (365)
99 TIGR03449 mycothiol_MshA UDP-N 99.5 4.1E-13 8.9E-18 149.5 20.1 208 494-713 186-403 (405)
100 cd05844 GT1_like_7 Glycosyltra 99.5 2.6E-13 5.7E-18 148.8 17.1 167 527-707 189-366 (367)
101 PRK15359 type III secretion sy 99.5 3.9E-13 8.4E-18 125.7 15.5 127 153-282 13-139 (144)
102 cd03813 GT1_like_3 This family 99.5 4.2E-13 9.2E-18 151.9 18.3 173 524-710 291-475 (475)
103 PRK15484 lipopolysaccharide 1, 99.5 7.2E-13 1.6E-17 145.7 19.4 180 520-712 187-378 (380)
104 cd04962 GT1_like_5 This family 99.5 6E-13 1.3E-17 146.2 18.5 176 520-712 191-371 (371)
105 COG3071 HemY Uncharacterized e 99.5 1.4E-10 3E-15 119.3 33.8 296 22-330 82-386 (400)
106 PF12569 NARP1: NMDA receptor- 99.5 6.6E-11 1.4E-15 131.9 34.2 296 25-330 5-330 (517)
107 PLN03077 Protein ECB2; Provisi 99.5 3.2E-11 6.9E-16 147.0 34.8 282 33-326 297-646 (857)
108 cd03812 GT1_CapH_like This fam 99.5 1.7E-12 3.7E-17 141.8 20.3 315 357-690 2-346 (358)
109 cd03806 GT1_ALG11_like This fa 99.5 2.4E-13 5.1E-18 151.2 13.6 170 524-703 235-418 (419)
110 cd03811 GT1_WabH_like This fam 99.5 1.5E-12 3.3E-17 140.7 19.5 319 356-690 1-347 (353)
111 cd03818 GT1_ExpC_like This fam 99.5 1.2E-12 2.6E-17 145.2 18.4 204 492-705 174-394 (396)
112 cd04951 GT1_WbdM_like This fam 99.5 1.1E-12 2.3E-17 143.4 17.6 173 521-710 183-359 (360)
113 PRK14720 transcript cleavage f 99.5 1E-11 2.2E-16 143.9 26.0 219 52-309 25-263 (906)
114 cd03821 GT1_Bme6_like This fam 99.5 3.1E-12 6.7E-17 139.7 21.1 175 520-706 197-374 (375)
115 cd03799 GT1_amsK_like This is 99.5 6.1E-12 1.3E-16 137.1 23.1 327 356-704 1-354 (355)
116 PRK10370 formate-dependent nit 99.5 3E-12 6.6E-17 126.3 18.5 153 141-304 24-179 (198)
117 KOG3060 Uncharacterized conser 99.5 1.8E-11 3.9E-16 118.3 22.9 178 139-316 58-238 (289)
118 PRK14720 transcript cleavage f 99.5 2E-11 4.3E-16 141.6 27.6 246 12-302 26-310 (906)
119 cd03817 GT1_UGDG_like This fam 99.5 1.1E-12 2.4E-17 143.4 16.6 173 521-711 197-373 (374)
120 PRK10307 putative glycosyl tra 99.4 3.1E-12 6.8E-17 142.7 18.7 205 494-714 193-410 (412)
121 KOG2376 Signal recognition par 99.4 7.3E-10 1.6E-14 118.9 35.2 286 28-316 83-505 (652)
122 cd03798 GT1_wlbH_like This fam 99.4 2.9E-12 6.3E-17 139.7 17.6 325 367-711 14-376 (377)
123 PRK10370 formate-dependent nit 99.4 1.5E-11 3.3E-16 121.3 20.5 125 146-270 52-179 (198)
124 TIGR02472 sucr_P_syn_N sucrose 99.4 4.7E-12 1E-16 142.1 19.1 175 523-709 245-438 (439)
125 PRK09922 UDP-D-galactose:(gluc 99.4 2.3E-12 5E-17 140.9 15.5 325 356-714 2-358 (359)
126 TIGR02918 accessory Sec system 99.4 9.2E-12 2E-16 140.3 20.3 165 527-711 320-499 (500)
127 KOG1915 Cell cycle control pro 99.4 2.2E-09 4.8E-14 111.9 35.1 286 2-298 92-500 (677)
128 TIGR02149 glgA_Coryne glycogen 99.4 7.5E-12 1.6E-16 138.5 18.1 181 520-712 195-387 (388)
129 cd03805 GT1_ALG2_like This fam 99.4 5E-12 1.1E-16 140.1 16.5 175 521-705 206-392 (392)
130 COG5010 TadD Flp pilus assembl 99.4 4.8E-11 1E-15 116.8 20.8 176 111-294 52-227 (257)
131 KOG3060 Uncharacterized conser 99.4 1.4E-10 3E-15 112.3 23.5 184 89-279 49-235 (289)
132 KOG3785 Uncharacterized conser 99.4 2.2E-10 4.7E-15 115.2 25.6 291 26-327 59-450 (557)
133 cd03795 GT1_like_4 This family 99.4 9.6E-12 2.1E-16 135.6 17.8 314 371-701 18-356 (357)
134 cd04949 GT1_gtfA_like This fam 99.4 8.4E-12 1.8E-16 137.3 17.3 162 526-703 204-370 (372)
135 TIGR02552 LcrH_SycD type III s 99.4 1.7E-11 3.7E-16 113.7 15.8 119 188-306 4-122 (135)
136 PLN02846 digalactosyldiacylgly 99.4 7E-12 1.5E-16 137.7 15.2 203 480-711 181-391 (462)
137 PLN02939 transferase, transfer 99.4 2.4E-11 5.3E-16 140.5 19.9 179 520-715 770-970 (977)
138 cd03808 GT1_cap1E_like This fa 99.4 6.2E-11 1.3E-15 128.5 22.4 169 523-706 185-358 (359)
139 cd04946 GT1_AmsK_like This fam 99.4 8E-12 1.7E-16 138.7 15.5 166 524-705 228-405 (407)
140 TIGR03087 stp1 sugar transfera 99.4 1.7E-11 3.6E-16 136.1 17.9 165 524-710 222-395 (397)
141 KOG1128 Uncharacterized conser 99.4 4.6E-11 9.9E-16 130.9 20.2 224 57-302 397-620 (777)
142 cd03823 GT1_ExpE7_like This fa 99.4 8.9E-12 1.9E-16 135.5 15.1 166 522-710 187-358 (359)
143 COG5010 TadD Flp pilus assembl 99.4 1.1E-10 2.4E-15 114.2 20.8 181 74-262 49-229 (257)
144 cd03809 GT1_mtfB_like This fam 99.3 3.1E-11 6.6E-16 131.8 18.5 170 523-706 192-364 (365)
145 cd03825 GT1_wcfI_like This fam 99.3 4.4E-11 9.5E-16 130.9 19.5 166 527-712 194-365 (365)
146 KOG1128 Uncharacterized conser 99.3 5.1E-11 1.1E-15 130.6 19.3 217 27-265 401-617 (777)
147 TIGR02470 sucr_synth sucrose s 99.3 2.4E-11 5.2E-16 140.1 17.8 180 524-714 548-752 (784)
148 cd03814 GT1_like_2 This family 99.3 2E-11 4.3E-16 133.2 16.4 165 524-710 195-364 (364)
149 TIGR02468 sucrsPsyn_pln sucros 99.3 2.4E-11 5.3E-16 142.8 17.7 181 523-716 476-675 (1050)
150 PLN00142 sucrose synthase 99.3 2.8E-11 6.1E-16 139.5 17.8 179 525-713 572-774 (815)
151 PRK15179 Vi polysaccharide bio 99.3 3.4E-10 7.4E-15 130.9 26.0 148 84-238 78-225 (694)
152 KOG1111 N-acetylglucosaminyltr 99.3 3.3E-11 7.1E-16 121.9 15.3 211 472-714 143-369 (426)
153 KOG0553 TPR repeat-containing 99.3 2.4E-11 5.3E-16 121.0 14.2 119 20-138 77-195 (304)
154 COG3071 HemY Uncharacterized e 99.3 6.1E-09 1.3E-13 107.4 32.0 257 60-327 86-350 (400)
155 PF12569 NARP1: NMDA receptor- 99.3 1.3E-09 2.7E-14 121.8 29.2 263 57-326 3-283 (517)
156 PLN02501 digalactosyldiacylgly 99.3 2.6E-11 5.6E-16 134.9 15.3 259 421-708 422-706 (794)
157 PRK04841 transcriptional regul 99.3 1.8E-09 3.9E-14 133.1 33.5 280 23-302 451-764 (903)
158 cd03802 GT1_AviGT4_like This f 99.3 2.2E-10 4.8E-15 123.8 22.4 311 356-710 2-335 (335)
159 cd03819 GT1_WavL_like This fam 99.3 1.4E-11 3.1E-16 134.2 13.2 258 423-692 68-348 (355)
160 TIGR02552 LcrH_SycD type III s 99.3 6.4E-11 1.4E-15 109.8 15.6 119 154-272 4-122 (135)
161 PLN02316 synthase/transferase 99.3 6E-11 1.3E-15 140.0 18.8 173 520-713 833-1035(1036)
162 cd04955 GT1_like_6 This family 99.3 1E-10 2.2E-15 128.0 19.5 163 529-710 196-363 (363)
163 KOG0553 TPR repeat-containing 99.3 3.1E-11 6.6E-16 120.2 13.6 118 201-318 81-198 (304)
164 PRK04841 transcriptional regul 99.3 5.8E-09 1.2E-13 128.7 35.3 305 28-333 413-759 (903)
165 PF00534 Glycos_transf_1: Glyc 99.3 2.8E-11 6E-16 117.4 11.8 156 522-689 11-172 (172)
166 PF04733 Coatomer_E: Coatomer 99.3 5.9E-11 1.3E-15 123.7 14.6 259 33-305 10-272 (290)
167 KOG1915 Cell cycle control pro 99.3 7.9E-08 1.7E-12 100.6 37.0 300 3-308 227-545 (677)
168 cd03800 GT1_Sucrose_synthase T 99.3 1.1E-10 2.5E-15 129.4 17.4 175 522-706 216-397 (398)
169 PRK15363 pathogenicity island 99.3 1.5E-10 3.3E-15 106.2 14.9 105 195-299 28-133 (157)
170 PRK00654 glgA glycogen synthas 99.2 1.9E-10 4.1E-15 130.0 18.6 166 521-714 276-465 (466)
171 KOG2376 Signal recognition par 99.2 1.2E-08 2.5E-13 109.8 30.6 289 32-332 20-403 (652)
172 cd03816 GT1_ALG1_like This fam 99.2 1.3E-10 2.8E-15 129.3 16.5 156 523-690 229-399 (415)
173 PRK14098 glycogen synthase; Pr 99.2 3.2E-10 7E-15 128.0 18.6 175 524-713 305-487 (489)
174 KOG3785 Uncharacterized conser 99.2 2.1E-09 4.6E-14 108.2 21.4 255 34-306 32-319 (557)
175 PRK14099 glycogen synthase; Pr 99.2 6.2E-10 1.4E-14 125.6 19.3 174 525-714 294-481 (485)
176 TIGR02095 glgA glycogen/starch 99.2 4.5E-10 9.8E-15 127.5 17.9 168 525-712 290-473 (473)
177 PRK15363 pathogenicity island 99.2 6.1E-10 1.3E-14 102.2 15.0 107 160-266 27-134 (157)
178 PRK05749 3-deoxy-D-manno-octul 99.2 1.5E-09 3.3E-14 121.6 20.7 168 528-711 235-419 (425)
179 PHA01633 putative glycosyl tra 99.2 7.2E-10 1.6E-14 117.3 16.1 161 525-706 147-334 (335)
180 PHA01630 putative group 1 glyc 99.2 7.9E-10 1.7E-14 118.3 16.6 169 525-711 141-330 (331)
181 KOG4340 Uncharacterized conser 99.1 2.6E-09 5.7E-14 105.3 18.2 266 35-310 21-317 (459)
182 cd03794 GT1_wbuB_like This fam 99.1 9.6E-10 2.1E-14 120.7 17.3 169 522-705 216-393 (394)
183 COG4783 Putative Zn-dependent 99.1 7.1E-09 1.5E-13 109.8 21.5 158 164-321 303-460 (484)
184 COG4783 Putative Zn-dependent 99.1 3.1E-08 6.7E-13 105.0 25.8 153 55-231 303-455 (484)
185 cd03804 GT1_wbaZ_like This fam 99.1 1.6E-09 3.6E-14 118.0 17.2 144 534-705 205-350 (351)
186 PLN02605 monogalactosyldiacylg 99.1 3.8E-09 8.2E-14 116.4 19.6 265 423-707 90-377 (382)
187 KOG4340 Uncharacterized conser 99.1 3.5E-08 7.5E-13 97.5 22.9 275 2-293 29-334 (459)
188 PLN03088 SGT1, suppressor of 99.1 2.7E-09 5.9E-14 115.4 16.8 109 27-135 5-113 (356)
189 PF14938 SNAP: Soluble NSF att 99.1 1E-08 2.2E-13 107.7 20.0 182 99-310 42-237 (282)
190 PLN03088 SGT1, suppressor of 99.1 3.8E-09 8.3E-14 114.3 16.6 105 174-278 9-113 (356)
191 KOG2047 mRNA splicing factor [ 99.1 2.4E-07 5.2E-12 100.5 29.7 271 22-297 246-614 (835)
192 PRK13609 diacylglycerol glucos 99.1 6.1E-09 1.3E-13 114.9 18.6 266 423-710 94-370 (380)
193 PF04733 Coatomer_E: Coatomer 99.0 3.5E-09 7.6E-14 110.5 15.6 232 25-271 36-272 (290)
194 PRK10125 putative glycosyl tra 99.0 2.8E-09 6.2E-14 117.7 15.6 149 524-712 239-405 (405)
195 PRK10866 outer membrane biogen 99.0 5.7E-08 1.2E-12 99.0 23.9 178 25-226 33-237 (243)
196 cd03791 GT1_Glycogen_synthase_ 99.0 4.4E-09 9.5E-14 119.8 16.2 168 524-710 294-475 (476)
197 COG4785 NlpI Lipoprotein NlpI, 99.0 2.7E-08 5.8E-13 94.1 18.3 198 22-231 63-267 (297)
198 PF13525 YfiO: Outer membrane 99.0 4.9E-08 1.1E-12 97.1 21.4 173 24-220 5-197 (203)
199 PRK13608 diacylglycerol glucos 99.0 1.3E-08 2.7E-13 112.4 19.0 176 521-715 197-375 (391)
200 KOG1070 rRNA processing protei 99.0 1.8E-07 3.9E-12 109.2 28.3 224 74-301 1440-1666(1710)
201 KOG2047 mRNA splicing factor [ 99.0 1.3E-06 2.7E-11 95.1 32.0 303 9-324 341-677 (835)
202 KOG1941 Acetylcholine receptor 99.0 9.7E-08 2.1E-12 96.8 21.7 299 27-327 9-353 (518)
203 cd03788 GT1_TPS Trehalose-6-Ph 99.0 7.7E-09 1.7E-13 116.2 15.5 172 524-708 262-458 (460)
204 COG0457 NrfG FOG: TPR repeat [ 99.0 2.1E-06 4.5E-11 86.0 32.0 223 72-301 37-268 (291)
205 TIGR02795 tol_pal_ybgF tol-pal 99.0 1.6E-08 3.5E-13 91.1 14.4 105 202-306 3-113 (119)
206 PRK10866 outer membrane biogen 99.0 1.1E-07 2.4E-12 96.9 22.0 189 56-261 30-238 (243)
207 COG0457 NrfG FOG: TPR repeat [ 99.0 1.3E-06 2.9E-11 87.4 30.2 225 37-267 36-268 (291)
208 CHL00033 ycf3 photosystem I as 99.0 2E-08 4.3E-13 96.9 15.8 122 37-158 12-138 (168)
209 TIGR02400 trehalose_OtsA alpha 98.9 3.4E-08 7.3E-13 110.1 18.4 173 525-709 258-454 (456)
210 PF13525 YfiO: Outer membrane 98.9 1.2E-07 2.6E-12 94.3 20.4 183 57-256 4-199 (203)
211 PRK02603 photosystem I assembl 98.9 7E-08 1.5E-12 93.4 18.1 87 26-112 37-126 (172)
212 TIGR02795 tol_pal_ybgF tol-pal 98.9 3E-08 6.6E-13 89.3 14.5 103 25-127 3-111 (119)
213 cd00189 TPR Tetratricopeptide 98.9 1.9E-08 4.1E-13 85.6 12.2 98 203-300 2-99 (100)
214 PF14938 SNAP: Soluble NSF att 98.9 1.8E-07 3.9E-12 98.2 21.8 141 39-195 30-183 (282)
215 PRK00726 murG undecaprenyldiph 98.9 2.4E-08 5.1E-13 109.2 15.7 260 424-710 82-356 (357)
216 PF13692 Glyco_trans_1_4: Glyc 98.9 2.8E-09 6.1E-14 98.7 7.0 129 526-675 2-135 (135)
217 KOG1941 Acetylcholine receptor 98.9 9.7E-08 2.1E-12 96.8 18.2 268 30-298 49-360 (518)
218 COG4235 Cytochrome c biogenesi 98.9 4.9E-08 1.1E-12 98.5 16.1 124 182-305 137-263 (287)
219 TIGR00236 wecB UDP-N-acetylglu 98.9 6.4E-08 1.4E-12 106.1 18.3 302 365-686 8-345 (365)
220 PF13414 TPR_11: TPR repeat; P 98.9 9.2E-09 2E-13 82.9 8.5 67 234-300 2-69 (69)
221 CHL00033 ycf3 photosystem I as 98.9 5.9E-08 1.3E-12 93.6 15.5 103 203-305 37-156 (168)
222 COG3898 Uncharacterized membra 98.9 9.8E-06 2.1E-10 83.5 31.7 260 30-297 126-391 (531)
223 PRK02603 photosystem I assembl 98.9 7E-08 1.5E-12 93.4 15.9 100 55-154 32-134 (172)
224 cd00189 TPR Tetratricopeptide 98.9 3.1E-08 6.7E-13 84.2 11.8 99 26-124 2-100 (100)
225 cd03785 GT1_MurG MurG is an N- 98.8 3.5E-08 7.6E-13 107.5 14.3 155 520-690 175-339 (350)
226 PF13414 TPR_11: TPR repeat; P 98.8 1.6E-08 3.5E-13 81.5 8.4 67 57-123 2-69 (69)
227 PLN02275 transferase, transfer 98.8 2.8E-08 6E-13 109.1 12.9 135 525-672 212-370 (371)
228 PF09976 TPR_21: Tetratricopep 98.8 2.1E-07 4.6E-12 87.3 17.0 117 179-296 23-145 (145)
229 KOG1070 rRNA processing protei 98.8 1.5E-06 3.3E-11 101.8 26.4 232 41-280 1441-1681(1710)
230 COG4235 Cytochrome c biogenesi 98.8 1.5E-07 3.2E-12 95.1 16.1 122 148-269 137-261 (287)
231 PRK10153 DNA-binding transcrip 98.8 2.2E-07 4.8E-12 104.7 18.9 142 163-305 333-489 (517)
232 KOG4648 Uncharacterized conser 98.8 4.4E-09 9.5E-14 105.5 4.6 241 27-308 100-340 (536)
233 cd03786 GT1_UDP-GlcNAc_2-Epime 98.8 8E-08 1.7E-12 105.3 15.0 295 372-683 14-345 (363)
234 COG4785 NlpI Lipoprotein NlpI, 98.8 5.7E-07 1.2E-11 85.3 18.2 196 57-265 64-267 (297)
235 PRK00025 lpxB lipid-A-disaccha 98.8 7.9E-08 1.7E-12 106.1 14.7 138 537-689 202-355 (380)
236 PRK10153 DNA-binding transcrip 98.8 2.7E-07 5.9E-12 104.0 19.0 142 53-202 332-488 (517)
237 PRK14501 putative bifunctional 98.8 9.2E-08 2E-12 113.7 15.7 178 525-717 264-468 (726)
238 PRK11906 transcriptional regul 98.8 5.5E-07 1.2E-11 96.4 19.5 166 96-261 259-433 (458)
239 KOG0543 FKBP-type peptidyl-pro 98.8 2.1E-07 4.5E-12 97.1 15.7 72 237-308 259-330 (397)
240 TIGR01133 murG undecaprenyldip 98.7 1E-07 2.2E-12 103.8 14.4 155 521-690 174-336 (348)
241 KOG0543 FKBP-type peptidyl-pro 98.7 2.4E-07 5.2E-12 96.7 16.0 137 20-162 204-355 (397)
242 KOG4648 Uncharacterized conser 98.7 7.1E-09 1.5E-13 104.1 4.5 209 63-312 102-310 (536)
243 PF09976 TPR_21: Tetratricopep 98.7 6.7E-07 1.4E-11 83.9 17.6 116 146-262 24-145 (145)
244 PF12895 Apc3: Anaphase-promot 98.7 2.8E-08 6E-13 83.6 7.2 81 37-118 2-84 (84)
245 KOG3081 Vesicle coat complex C 98.7 5.3E-06 1.2E-10 81.6 23.7 255 34-304 18-277 (299)
246 PF13432 TPR_16: Tetratricopep 98.7 4.2E-08 9E-13 78.0 7.8 64 240-303 2-65 (65)
247 PRK11906 transcriptional regul 98.7 3.3E-07 7.1E-12 98.0 16.8 153 2-160 277-434 (458)
248 PF12895 Apc3: Anaphase-promot 98.7 3.3E-08 7.1E-13 83.2 7.4 81 214-295 2-84 (84)
249 PRK15331 chaperone protein Sic 98.7 2.2E-07 4.8E-12 85.9 12.3 105 197-302 33-137 (165)
250 PLN03063 alpha,alpha-trehalose 98.7 3.9E-07 8.4E-12 108.2 17.6 179 525-716 278-482 (797)
251 cd04950 GT1_like_1 Glycosyltra 98.7 3E-07 6.5E-12 101.1 15.4 189 494-710 172-370 (373)
252 PF13432 TPR_16: Tetratricopep 98.7 7.6E-08 1.6E-12 76.5 7.5 62 30-91 3-64 (65)
253 PRK10803 tol-pal system protei 98.7 6.2E-07 1.3E-11 92.0 16.1 106 201-306 142-254 (263)
254 PRK15331 chaperone protein Sic 98.7 3.6E-07 7.9E-12 84.4 12.8 100 26-126 39-138 (165)
255 TIGR00215 lpxB lipid-A-disacch 98.7 1.4E-07 3E-12 103.7 11.7 250 423-690 79-366 (385)
256 PRK10803 tol-pal system protei 98.6 9.4E-07 2E-11 90.7 16.4 103 25-127 143-252 (263)
257 PF09295 ChAPs: ChAPs (Chs5p-A 98.6 8.6E-07 1.9E-11 95.6 16.5 122 171-295 173-294 (395)
258 cd01635 Glycosyltransferase_GT 98.6 6.3E-07 1.4E-11 90.4 14.6 105 528-638 109-214 (229)
259 KOG1387 Glycosyltransferase [C 98.6 5.4E-07 1.2E-11 91.1 13.0 271 425-714 142-461 (465)
260 TIGR03713 acc_sec_asp1 accesso 98.6 3.2E-07 6.9E-12 103.6 12.9 159 535-707 331-517 (519)
261 COG4105 ComL DNA uptake lipopr 98.6 3.4E-05 7.4E-10 76.5 24.0 188 23-234 33-237 (254)
262 KOG3617 WD40 and TPR repeat-co 98.5 1.9E-05 4.1E-10 88.0 23.5 131 165-295 965-1171(1416)
263 KOG3081 Vesicle coat complex C 98.5 2.2E-05 4.8E-10 77.4 21.4 234 65-316 15-254 (299)
264 PF09295 ChAPs: ChAPs (Chs5p-A 98.5 2.5E-06 5.5E-11 92.0 16.5 117 142-261 178-294 (395)
265 KOG2053 Mitochondrial inherita 98.5 0.00039 8.5E-09 79.2 32.5 226 35-268 20-259 (932)
266 PF12688 TPR_5: Tetratrico pep 98.5 3.9E-06 8.5E-11 74.8 13.7 93 170-262 4-102 (120)
267 KOG3617 WD40 and TPR repeat-co 98.5 3.1E-05 6.8E-10 86.3 23.0 173 34-229 810-995 (1416)
268 KOG0853 Glycosyltransferase [C 98.5 3.1E-06 6.6E-11 92.2 15.0 181 520-710 267-466 (495)
269 KOG4234 TPR repeat-containing 98.5 1.8E-06 3.9E-11 80.9 11.3 104 205-308 99-207 (271)
270 COG3898 Uncharacterized membra 98.4 0.00078 1.7E-08 69.9 31.2 295 30-345 90-398 (531)
271 KOG4234 TPR repeat-containing 98.4 4.3E-06 9.2E-11 78.5 13.4 116 16-131 87-207 (271)
272 COG0438 RfaG Glycosyltransfera 98.4 1.1E-05 2.3E-10 86.7 18.7 176 527-714 200-379 (381)
273 KOG2053 Mitochondrial inherita 98.4 0.00056 1.2E-08 78.0 32.1 285 2-295 28-334 (932)
274 PF12688 TPR_5: Tetratrico pep 98.4 5.8E-06 1.3E-10 73.7 13.2 96 202-297 2-103 (120)
275 COG4105 ComL DNA uptake lipopr 98.4 5E-05 1.1E-09 75.3 20.9 192 57-269 33-238 (254)
276 COG1729 Uncharacterized protei 98.4 6.5E-06 1.4E-10 82.3 14.8 103 27-129 144-252 (262)
277 PF14559 TPR_19: Tetratricopep 98.4 8.2E-07 1.8E-11 71.2 7.0 66 35-100 2-67 (68)
278 KOG1586 Protein required for f 98.4 3.7E-05 8E-10 74.2 19.0 106 206-311 118-237 (288)
279 COG1729 Uncharacterized protei 98.4 5.7E-06 1.2E-10 82.7 14.1 104 204-307 144-253 (262)
280 PF14559 TPR_19: Tetratricopep 98.4 1E-06 2.2E-11 70.6 7.3 54 248-301 4-57 (68)
281 PLN03098 LPA1 LOW PSII ACCUMUL 98.4 2E-06 4.4E-11 92.0 10.6 68 231-298 71-141 (453)
282 COG4700 Uncharacterized protei 98.3 5.7E-05 1.2E-09 70.3 18.3 148 148-297 71-221 (251)
283 PF13371 TPR_9: Tetratricopept 98.3 4E-06 8.7E-11 68.2 8.7 63 243-305 3-65 (73)
284 KOG1586 Protein required for f 98.3 0.00016 3.4E-09 70.0 20.4 182 37-234 27-228 (288)
285 PF13371 TPR_9: Tetratricopept 98.3 4.5E-06 9.8E-11 67.9 8.7 65 33-97 4-68 (73)
286 KOG2796 Uncharacterized conser 98.3 0.00053 1.2E-08 67.4 24.0 227 57-303 68-320 (366)
287 KOG1585 Protein required for f 98.3 0.00011 2.4E-09 71.5 18.9 199 93-324 32-246 (308)
288 KOG2300 Uncharacterized conser 98.3 0.0019 4.1E-08 68.9 29.2 301 24-327 7-426 (629)
289 PF13512 TPR_18: Tetratricopep 98.2 3.4E-05 7.3E-10 70.0 14.1 105 202-306 11-136 (142)
290 COG4700 Uncharacterized protei 98.2 0.00016 3.5E-09 67.4 18.5 154 101-263 65-221 (251)
291 PF13512 TPR_18: Tetratricopep 98.2 3.4E-05 7.4E-10 69.9 13.9 102 26-127 12-134 (142)
292 TIGR02398 gluc_glyc_Psyn gluco 98.2 6.7E-05 1.4E-09 83.6 17.9 171 525-709 284-480 (487)
293 PLN03098 LPA1 LOW PSII ACCUMUL 98.2 1.1E-05 2.3E-10 86.6 10.7 68 163-230 71-141 (453)
294 PF13424 TPR_12: Tetratricopep 98.2 2.6E-06 5.6E-11 70.4 4.9 73 90-162 3-75 (78)
295 KOG1585 Protein required for f 98.2 0.00042 9.1E-09 67.5 20.3 203 22-260 29-252 (308)
296 KOG4507 Uncharacterized conser 98.1 0.00015 3.2E-09 78.4 18.7 99 213-311 619-718 (886)
297 KOG4555 TPR repeat-containing 98.1 0.0002 4.4E-09 62.7 15.6 92 174-265 50-145 (175)
298 KOG4555 TPR repeat-containing 98.1 0.00017 3.7E-09 63.2 15.0 104 22-125 41-148 (175)
299 TIGR02919 accessory Sec system 98.1 9.7E-05 2.1E-09 81.7 16.8 162 494-688 261-424 (438)
300 PF13424 TPR_12: Tetratricopep 98.1 9.6E-06 2.1E-10 66.9 6.8 64 23-86 4-74 (78)
301 PF06552 TOM20_plant: Plant sp 98.1 3.9E-05 8.5E-10 71.7 10.9 74 108-181 7-83 (186)
302 KOG1914 mRNA cleavage and poly 98.1 0.028 6E-07 61.2 33.4 150 149-298 309-464 (656)
303 KOG2471 TPR repeat-containing 98.0 0.0011 2.5E-08 70.5 22.7 267 33-300 215-650 (696)
304 cd03793 GT1_Glycogen_synthase_ 98.0 1.7E-05 3.6E-10 88.4 9.8 111 598-714 466-589 (590)
305 PF06552 TOM20_plant: Plant sp 98.0 3.7E-05 8.1E-10 71.9 10.3 91 2-92 10-114 (186)
306 KOG2471 TPR repeat-containing 98.0 0.00024 5.1E-09 75.5 17.3 282 30-314 23-380 (696)
307 TIGR01426 MGT glycosyltransfer 98.0 0.00014 3.1E-09 80.4 16.9 165 523-709 223-390 (392)
308 TIGR03492 conserved hypothetic 98.0 5E-05 1.1E-09 83.6 13.0 156 536-706 220-393 (396)
309 KOG2610 Uncharacterized conser 98.0 0.00068 1.5E-08 68.9 18.4 152 145-296 115-274 (491)
310 KOG2796 Uncharacterized conser 98.0 0.00045 9.7E-09 67.9 16.4 196 64-279 128-333 (366)
311 PF13524 Glyco_trans_1_2: Glyc 97.9 5.7E-05 1.2E-09 64.5 9.1 90 609-706 1-91 (92)
312 KOG4642 Chaperone-dependent E3 97.9 3.6E-05 7.8E-10 74.5 7.9 99 24-122 10-108 (284)
313 COG0707 MurG UDP-N-acetylgluco 97.9 0.00059 1.3E-08 73.4 17.8 148 525-690 182-339 (357)
314 PLN02670 transferase, transfer 97.9 0.00041 8.9E-09 77.5 17.2 175 524-712 277-466 (472)
315 COG1819 Glycosyl transferases, 97.9 0.00083 1.8E-08 74.1 19.4 165 522-711 234-401 (406)
316 PLN03064 alpha,alpha-trehalose 97.8 0.00051 1.1E-08 81.8 17.9 177 525-715 362-565 (934)
317 PF04184 ST7: ST7 protein; In 97.8 0.0014 3E-08 70.6 19.3 190 96-305 172-382 (539)
318 PF02259 FAT: FAT domain; Int 97.8 0.015 3.3E-07 63.1 28.6 260 32-301 6-341 (352)
319 PF05843 Suf: Suppressor of fo 97.8 0.0004 8.8E-09 72.7 15.3 135 169-303 3-141 (280)
320 KOG2610 Uncharacterized conser 97.8 0.0014 3E-08 66.7 18.0 162 95-263 106-275 (491)
321 KOG1550 Extracellular protein 97.8 0.0088 1.9E-07 68.9 27.3 252 36-301 261-541 (552)
322 PF10345 Cohesin_load: Cohesin 97.8 0.033 7.1E-07 65.3 32.3 286 1-293 39-428 (608)
323 PF04184 ST7: ST7 protein; In 97.8 0.0014 3E-08 70.7 18.6 224 62-306 172-422 (539)
324 PLN02410 UDP-glucoronosyl/UDP- 97.8 0.00083 1.8E-08 75.0 17.0 141 524-676 263-411 (451)
325 PF13281 DUF4071: Domain of un 97.7 0.0083 1.8E-07 64.1 23.3 192 57-271 140-341 (374)
326 KOG0551 Hsp90 co-chaperone CNS 97.7 0.00038 8.2E-09 70.8 12.1 117 8-125 66-186 (390)
327 PHA03392 egt ecdysteroid UDP-g 97.7 0.00091 2E-08 76.0 16.7 163 526-709 297-465 (507)
328 PLN03004 UDP-glycosyltransfera 97.7 0.00074 1.6E-08 75.1 15.6 141 524-677 269-426 (451)
329 KOG4642 Chaperone-dependent E3 97.7 9.2E-05 2E-09 71.8 6.9 90 174-263 17-106 (284)
330 PLN02992 coniferyl-alcohol glu 97.7 0.0012 2.6E-08 74.0 16.9 154 524-690 262-448 (481)
331 KOG2300 Uncharacterized conser 97.7 0.12 2.6E-06 55.6 30.6 291 4-294 191-552 (629)
332 PLN02863 UDP-glucoronosyl/UDP- 97.7 0.00097 2.1E-08 75.0 15.9 104 524-637 282-389 (477)
333 COG2909 MalT ATP-dependent tra 97.7 0.047 1E-06 63.1 28.9 234 28-262 419-686 (894)
334 KOG0376 Serine-threonine phosp 97.7 7E-05 1.5E-09 80.1 6.2 110 26-135 6-115 (476)
335 PF07079 DUF1347: Protein of u 97.6 0.14 3.1E-06 54.8 30.1 49 245-294 472-520 (549)
336 PLN02764 glycosyltransferase f 97.6 0.0013 2.7E-08 73.1 15.6 156 523-689 255-422 (453)
337 KOG0545 Aryl-hydrocarbon recep 97.6 0.00099 2.2E-08 64.9 12.7 106 203-308 180-303 (329)
338 KOG1914 mRNA cleavage and poly 97.6 0.07 1.5E-06 58.2 27.6 61 26-87 22-82 (656)
339 PLN03007 UDP-glucosyltransfera 97.6 0.0014 3.1E-08 74.1 16.3 103 524-636 284-390 (482)
340 PF05843 Suf: Suppressor of fo 97.6 0.0014 3.1E-08 68.5 15.2 129 141-269 9-141 (280)
341 PF10300 DUF3808: Protein of u 97.6 0.023 5.1E-07 63.9 25.7 151 146-296 201-374 (468)
342 KOG0545 Aryl-hydrocarbon recep 97.6 0.0012 2.6E-08 64.4 13.0 104 25-128 179-300 (329)
343 KOG1258 mRNA processing protei 97.6 0.18 4E-06 56.1 31.0 280 4-290 66-421 (577)
344 PLN02210 UDP-glucosyl transfer 97.6 0.0014 3E-08 73.4 15.3 139 524-676 268-416 (456)
345 cd03784 GT1_Gtf_like This fami 97.6 0.0028 6E-08 70.4 17.8 141 524-686 238-382 (401)
346 KOG0530 Protein farnesyltransf 97.5 0.0095 2.1E-07 59.0 18.5 232 36-274 55-308 (318)
347 PF13428 TPR_14: Tetratricopep 97.5 0.00019 4.1E-09 51.7 5.3 39 238-276 4-42 (44)
348 PF08631 SPO22: Meiosis protei 97.5 0.057 1.2E-06 56.5 26.1 122 2-123 12-152 (278)
349 COG0297 GlgA Glycogen synthase 97.5 0.0028 6.1E-08 70.5 16.8 165 525-715 293-481 (487)
350 PLN02167 UDP-glycosyltransfera 97.5 0.002 4.4E-08 72.7 16.0 103 524-637 279-386 (475)
351 KOG0530 Protein farnesyltransf 97.5 0.018 3.9E-07 57.1 19.9 247 38-308 40-308 (318)
352 PLN02554 UDP-glycosyltransfera 97.5 0.0046 1E-07 69.9 18.4 103 524-637 273-388 (481)
353 PF00201 UDPGT: UDP-glucoronos 97.5 0.00054 1.2E-08 78.6 11.1 162 524-709 275-442 (500)
354 PF13428 TPR_14: Tetratricopep 97.5 0.00027 5.9E-09 50.9 5.5 40 60-99 3-42 (44)
355 KOG3616 Selective LIM binding 97.5 0.011 2.4E-07 65.8 19.9 174 25-224 662-847 (1636)
356 PF10300 DUF3808: Protein of u 97.5 0.052 1.1E-06 61.1 26.2 162 102-264 198-376 (468)
357 PLN02208 glycosyltransferase f 97.4 0.0019 4.2E-08 71.8 14.3 152 523-689 249-416 (442)
358 PLN02207 UDP-glycosyltransfera 97.4 0.0049 1.1E-07 68.9 17.4 103 523-636 273-377 (468)
359 PF13281 DUF4071: Domain of un 97.4 0.016 3.5E-07 61.9 20.1 189 91-306 140-342 (374)
360 PLN02448 UDP-glycosyltransfera 97.4 0.006 1.3E-07 68.7 18.1 135 524-676 273-416 (459)
361 PF08631 SPO22: Meiosis protei 97.4 0.14 3.1E-06 53.5 27.3 226 69-296 4-273 (278)
362 PF13431 TPR_17: Tetratricopep 97.4 0.00018 3.8E-09 48.5 3.3 32 47-78 2-33 (34)
363 PRK09814 beta-1,6-galactofuran 97.4 0.00083 1.8E-08 72.5 10.4 132 527-690 170-313 (333)
364 PF13431 TPR_17: Tetratricopep 97.4 0.00018 4E-09 48.4 3.2 32 258-289 2-33 (34)
365 PLN02562 UDP-glycosyltransfera 97.4 0.0065 1.4E-07 68.0 17.6 143 525-682 273-420 (448)
366 KOG4507 Uncharacterized conser 97.4 0.0042 9E-08 67.7 15.0 102 179-280 619-721 (886)
367 COG2909 MalT ATP-dependent tra 97.4 0.098 2.1E-06 60.6 26.5 64 97-162 463-526 (894)
368 KOG0985 Vesicle coat protein c 97.3 0.055 1.2E-06 62.8 23.9 63 269-334 1279-1341(1666)
369 PLN00414 glycosyltransferase f 97.3 0.0063 1.4E-07 67.9 16.8 155 523-689 250-417 (446)
370 PLN00164 glucosyltransferase; 97.3 0.0041 8.9E-08 70.2 15.4 150 524-686 271-443 (480)
371 PF10345 Cohesin_load: Cohesin 97.3 0.31 6.8E-06 57.1 31.6 287 40-329 37-428 (608)
372 PF13528 Glyco_trans_1_3: Glyc 97.3 0.0024 5.2E-08 68.5 12.9 109 524-658 191-300 (318)
373 PLN02173 UDP-glucosyl transfer 97.3 0.003 6.5E-08 70.3 13.8 139 524-676 263-409 (449)
374 PF00515 TPR_1: Tetratricopept 97.3 0.00042 9.1E-09 46.7 4.4 32 270-301 2-33 (34)
375 PLN03015 UDP-glucosyl transfer 97.3 0.0028 6E-08 70.7 13.3 104 524-637 266-381 (470)
376 PRK12446 undecaprenyldiphospho 97.3 0.004 8.6E-08 67.6 14.3 229 423-680 81-330 (352)
377 PLN02152 indole-3-acetate beta 97.3 0.0089 1.9E-07 66.7 17.2 143 524-676 260-418 (455)
378 PF08424 NRDE-2: NRDE-2, neces 97.3 0.026 5.6E-07 60.4 20.0 171 4-197 6-184 (321)
379 PF07719 TPR_2: Tetratricopept 97.3 0.00063 1.4E-08 45.7 5.0 33 270-302 2-34 (34)
380 TIGR03590 PseG pseudaminic aci 97.2 0.007 1.5E-07 63.4 15.0 223 383-636 30-267 (279)
381 KOG1550 Extracellular protein 97.2 0.15 3.3E-06 58.8 27.0 246 40-299 228-505 (552)
382 PLN02555 limonoid glucosyltran 97.2 0.0052 1.1E-07 69.1 14.6 153 525-688 277-441 (480)
383 COG0790 FOG: TPR repeat, SEL1 97.2 0.18 3.8E-06 53.3 25.4 174 33-215 50-236 (292)
384 PLN02534 UDP-glycosyltransfera 97.2 0.004 8.6E-08 70.1 13.2 106 524-637 282-390 (491)
385 COG3118 Thioredoxin domain-con 97.2 0.023 5E-07 57.7 16.9 137 167-304 134-271 (304)
386 KOG0376 Serine-threonine phosp 97.2 0.00067 1.4E-08 72.8 6.4 103 207-309 10-112 (476)
387 COG0790 FOG: TPR repeat, SEL1 97.1 0.12 2.7E-06 54.4 23.5 129 148-283 92-236 (292)
388 PF00515 TPR_1: Tetratricopept 97.1 0.0012 2.6E-08 44.4 4.8 32 93-124 2-33 (34)
389 PF02259 FAT: FAT domain; Int 97.1 0.17 3.7E-06 54.9 24.3 238 65-309 5-298 (352)
390 PF07719 TPR_2: Tetratricopept 97.0 0.0018 4E-08 43.4 5.1 31 94-124 3-33 (34)
391 KOG0551 Hsp90 co-chaperone CNS 96.9 0.0041 8.9E-08 63.5 9.1 98 205-302 85-186 (390)
392 KOG3616 Selective LIM binding 96.9 0.088 1.9E-06 59.0 19.7 148 94-261 663-817 (1636)
393 COG3118 Thioredoxin domain-con 96.9 0.036 7.9E-07 56.3 15.6 142 142-284 143-287 (304)
394 PF02350 Epimerase_2: UDP-N-ac 96.9 0.0086 1.9E-07 64.7 12.2 136 523-678 178-321 (346)
395 PF03704 BTAD: Bacterial trans 96.9 0.025 5.5E-07 52.8 13.9 94 28-121 10-125 (146)
396 PF03704 BTAD: Bacterial trans 96.9 0.031 6.7E-07 52.2 14.3 62 236-297 63-124 (146)
397 COG2976 Uncharacterized protei 96.8 0.061 1.3E-06 51.3 15.5 117 185-302 70-192 (207)
398 KOG0985 Vesicle coat protein c 96.8 0.12 2.5E-06 60.3 20.3 225 36-293 1087-1336(1666)
399 KOG1308 Hsp70-interacting prot 96.8 0.0017 3.6E-08 66.7 4.9 97 28-124 118-214 (377)
400 TIGR00661 MJ1255 conserved hyp 96.7 0.013 2.9E-07 62.8 12.1 69 586-659 229-298 (321)
401 PF08424 NRDE-2: NRDE-2, neces 96.7 0.12 2.6E-06 55.3 18.8 148 154-301 6-186 (321)
402 PF13181 TPR_8: Tetratricopept 96.7 0.0029 6.2E-08 42.5 4.1 32 270-301 2-33 (34)
403 PRK02797 4-alpha-L-fucosyltran 96.6 0.061 1.3E-06 55.4 14.6 168 525-711 145-316 (322)
404 PF02684 LpxB: Lipid-A-disacch 96.6 0.02 4.4E-07 61.8 11.7 136 536-687 199-352 (373)
405 KOG1258 mRNA processing protei 96.5 1.9 4.1E-05 48.3 33.6 169 143-311 307-483 (577)
406 TIGR02094 more_P_ylases alpha- 96.5 0.087 1.9E-06 60.9 17.4 171 525-709 388-598 (601)
407 KOG1308 Hsp70-interacting prot 96.5 0.0026 5.7E-08 65.3 4.2 89 213-301 126-214 (377)
408 COG2976 Uncharacterized protei 96.5 0.12 2.5E-06 49.5 14.6 99 27-126 92-193 (207)
409 KOG2941 Beta-1,4-mannosyltrans 96.4 0.027 5.9E-07 58.0 10.8 125 553-689 291-423 (444)
410 PF04910 Tcf25: Transcriptiona 96.4 0.14 3E-06 55.4 17.1 107 49-161 31-167 (360)
411 COG1519 KdtA 3-deoxy-D-manno-o 96.4 0.14 3.1E-06 54.9 16.6 145 536-691 240-402 (419)
412 KOG3783 Uncharacterized conser 96.4 0.13 2.8E-06 56.4 16.5 249 41-302 250-524 (546)
413 KOG3824 Huntingtin interacting 96.4 0.013 2.8E-07 59.1 8.1 66 245-310 126-191 (472)
414 KOG0890 Protein kinase of the 96.4 1.4 3.1E-05 56.6 27.1 108 199-308 1668-1794(2382)
415 COG5107 RNA14 Pre-mRNA 3'-end 96.3 1 2.2E-05 48.3 22.0 238 47-301 291-534 (660)
416 COG5107 RNA14 Pre-mRNA 3'-end 96.3 1.5 3.3E-05 47.2 23.0 281 6-297 31-361 (660)
417 PF06258 Mito_fiss_Elm1: Mitoc 96.3 0.044 9.6E-07 57.9 12.2 202 429-644 53-264 (311)
418 PF04910 Tcf25: Transcriptiona 96.3 0.17 3.6E-06 54.9 16.8 141 160-300 33-224 (360)
419 TIGR03568 NeuC_NnaA UDP-N-acet 96.2 0.11 2.4E-06 56.7 15.4 77 586-676 262-339 (365)
420 PF13181 TPR_8: Tetratricopept 96.2 0.0096 2.1E-07 39.8 4.3 30 94-123 3-32 (34)
421 cd04299 GT1_Glycogen_Phosphory 96.1 0.15 3.3E-06 60.3 16.6 179 523-715 475-694 (778)
422 PRK11619 lytic murein transgly 96.0 4.6 9.9E-05 47.4 30.2 268 5-297 84-374 (644)
423 KOG1192 UDP-glucuronosyl and U 96.0 0.078 1.7E-06 60.7 13.3 144 526-686 278-433 (496)
424 PF13176 TPR_7: Tetratricopept 95.9 0.0076 1.7E-07 41.1 2.7 26 272-297 2-27 (36)
425 KOG2041 WD40 repeat protein [G 95.8 0.63 1.4E-05 52.3 18.5 64 54-118 689-760 (1189)
426 KOG3824 Huntingtin interacting 95.8 0.034 7.3E-07 56.2 8.1 69 67-135 125-193 (472)
427 PF13174 TPR_6: Tetratricopept 95.8 0.017 3.7E-07 38.2 4.2 31 271-301 2-32 (33)
428 PRK15180 Vi polysaccharide bio 95.8 0.038 8.3E-07 59.0 8.6 143 178-320 300-442 (831)
429 KOG0128 RNA-binding protein SA 95.7 4.4 9.5E-05 47.1 24.6 240 38-278 93-355 (881)
430 KOG1464 COP9 signalosome, subu 95.5 0.47 1E-05 47.4 14.6 113 171-283 149-286 (440)
431 PF07079 DUF1347: Protein of u 95.5 3 6.6E-05 45.1 21.4 190 65-261 305-521 (549)
432 PF04781 DUF627: Protein of un 95.5 0.11 2.4E-06 44.9 8.9 92 30-121 2-107 (111)
433 PF13174 TPR_6: Tetratricopept 95.4 0.029 6.4E-07 37.0 4.2 29 61-89 3-31 (33)
434 KOG3783 Uncharacterized conser 95.3 0.93 2E-05 50.0 17.4 241 3-268 253-524 (546)
435 COG3914 Spy Predicted O-linked 95.3 0.67 1.5E-05 51.5 16.2 138 38-176 45-185 (620)
436 KOG1464 COP9 signalosome, subu 95.2 1.2 2.7E-05 44.6 16.3 193 106-301 41-263 (440)
437 PF14561 TPR_20: Tetratricopep 95.2 0.18 3.9E-06 42.5 9.3 50 254-303 7-56 (90)
438 PF13176 TPR_7: Tetratricopept 95.2 0.039 8.5E-07 37.6 4.3 28 94-121 1-28 (36)
439 cd03789 GT1_LPS_heptosyltransf 95.2 0.23 5.1E-06 52.0 12.4 95 540-645 139-233 (279)
440 PRK13184 pknD serine/threonine 95.2 8.7 0.00019 46.7 26.5 123 2-125 494-624 (932)
441 PRK13184 pknD serine/threonine 95.1 8.9 0.00019 46.7 26.3 108 31-139 482-599 (932)
442 COG5159 RPN6 26S proteasome re 95.1 4.1 9E-05 41.3 19.5 272 28-300 7-316 (421)
443 PF05693 Glycogen_syn: Glycoge 95.1 0.033 7.1E-07 62.4 5.6 113 598-717 461-587 (633)
444 KOG0890 Protein kinase of the 95.0 13 0.00028 48.6 27.8 81 217-299 1645-1732(2382)
445 COG1747 Uncharacterized N-term 94.9 7.3 0.00016 42.9 22.7 39 243-281 213-251 (711)
446 PF14853 Fis1_TPR_C: Fis1 C-te 94.9 0.069 1.5E-06 39.9 5.2 36 271-306 3-38 (53)
447 KOG1463 26S proteasome regulat 94.9 5.6 0.00012 41.5 20.3 273 28-301 8-319 (411)
448 KOG2041 WD40 repeat protein [G 94.9 1 2.3E-05 50.7 16.2 192 74-292 679-875 (1189)
449 KOG2396 HAT (Half-A-TPR) repea 94.8 0.25 5.5E-06 53.6 11.2 90 221-310 91-181 (568)
450 PF09613 HrpB1_HrpK: Bacterial 94.8 0.54 1.2E-05 43.8 12.0 97 26-123 12-108 (160)
451 PF04101 Glyco_tran_28_C: Glyc 94.7 0.038 8.2E-07 53.0 4.5 93 586-685 55-154 (167)
452 PF04781 DUF627: Protein of un 94.7 0.28 6.1E-06 42.5 9.1 46 253-298 62-107 (111)
453 COG4649 Uncharacterized protei 94.7 1.8 3.9E-05 40.6 14.7 115 148-262 73-194 (221)
454 PRK10941 hypothetical protein; 94.6 0.19 4E-06 51.9 9.5 70 237-306 183-252 (269)
455 PF14853 Fis1_TPR_C: Fis1 C-te 94.6 0.16 3.5E-06 37.9 6.6 32 62-93 5-36 (53)
456 PF09613 HrpB1_HrpK: Bacterial 94.6 0.6 1.3E-05 43.6 11.6 83 203-285 12-94 (160)
457 KOG1463 26S proteasome regulat 94.4 7.4 0.00016 40.6 21.4 48 2-49 23-73 (411)
458 COG4370 Uncharacterized protei 94.4 0.038 8.3E-07 55.8 3.8 118 581-713 291-411 (412)
459 smart00028 TPR Tetratricopepti 94.4 0.065 1.4E-06 34.3 3.8 31 271-301 3-33 (34)
460 PRK10941 hypothetical protein; 94.4 0.56 1.2E-05 48.4 12.2 70 60-129 183-252 (269)
461 TIGR02201 heptsyl_trn_III lipo 94.2 0.88 1.9E-05 49.3 14.3 112 524-645 181-295 (344)
462 COG1747 Uncharacterized N-term 94.2 11 0.00024 41.6 22.6 228 54-307 62-297 (711)
463 PF14561 TPR_20: Tetratricopep 94.2 0.43 9.3E-06 40.3 9.1 64 221-284 8-73 (90)
464 PF09986 DUF2225: Uncharacteri 94.2 0.41 8.8E-06 47.7 10.5 54 105-158 90-143 (214)
465 PF01075 Glyco_transf_9: Glyco 94.1 0.086 1.9E-06 54.1 5.9 206 424-645 3-218 (247)
466 COG4976 Predicted methyltransf 94.1 0.083 1.8E-06 51.5 5.1 66 243-308 3-68 (287)
467 KOG1839 Uncharacterized protei 94.0 0.45 9.8E-06 57.7 12.2 162 137-298 936-1128(1236)
468 PF12968 DUF3856: Domain of Un 94.0 1.9 4.2E-05 37.7 12.5 99 23-121 6-129 (144)
469 KOG4814 Uncharacterized conser 93.9 0.86 1.9E-05 50.9 12.9 104 19-122 349-458 (872)
470 PF12968 DUF3856: Domain of Un 93.8 0.98 2.1E-05 39.5 10.4 62 237-298 57-129 (144)
471 PRK14089 ipid-A-disaccharide s 93.7 0.36 7.7E-06 52.0 9.7 78 536-634 182-259 (347)
472 PF05159 Capsule_synth: Capsul 93.7 0.2 4.3E-06 52.2 7.7 91 538-640 138-229 (269)
473 PF09986 DUF2225: Uncharacteri 93.6 0.65 1.4E-05 46.3 10.8 67 58-124 118-197 (214)
474 PF10602 RPN7: 26S proteasome 93.6 0.83 1.8E-05 44.1 11.2 103 58-161 36-141 (177)
475 COG0763 LpxB Lipid A disacchar 93.5 0.72 1.6E-05 49.2 11.4 136 536-687 203-356 (381)
476 KOG1538 Uncharacterized conser 93.5 3.6 7.9E-05 46.2 16.9 217 61-295 588-830 (1081)
477 PF04007 DUF354: Protein of un 93.5 4.5 9.7E-05 43.3 17.5 61 599-667 241-302 (335)
478 COG4671 Predicted glycosyl tra 93.4 2 4.4E-05 45.0 14.0 126 523-659 217-346 (400)
479 PRK10017 colanic acid biosynth 93.3 2.8 6.1E-05 46.6 16.2 84 585-677 306-394 (426)
480 KOG3364 Membrane protein invol 93.3 0.7 1.5E-05 41.4 9.1 73 234-306 31-108 (149)
481 PF00982 Glyco_transf_20: Glyc 93.3 1.5 3.3E-05 49.3 14.3 177 524-709 274-472 (474)
482 smart00028 TPR Tetratricopepti 93.2 0.15 3.2E-06 32.5 3.9 26 62-87 5-30 (34)
483 PRK10117 trehalose-6-phosphate 93.1 3.2 7E-05 46.3 16.2 179 526-713 255-455 (474)
484 PRK10916 ADP-heptose:LPS hepto 93.1 1.6 3.4E-05 47.4 13.9 111 525-645 181-296 (348)
485 PF07429 Glyco_transf_56: 4-al 93.1 3.6 7.8E-05 43.4 15.4 123 526-658 187-313 (360)
486 PF10602 RPN7: 26S proteasome 93.0 1.2 2.7E-05 42.9 11.3 98 202-299 37-143 (177)
487 KOG1839 Uncharacterized protei 92.8 1 2.2E-05 54.9 12.4 136 24-163 932-1087(1236)
488 KOG1538 Uncharacterized conser 92.7 7.7 0.00017 43.8 17.9 210 28-261 589-830 (1081)
489 KOG0529 Protein geranylgeranyl 92.7 3.3 7.1E-05 44.4 14.6 170 3-173 49-235 (421)
490 KOG4814 Uncharacterized conser 92.7 11 0.00024 42.7 18.9 98 133-230 354-457 (872)
491 KOG2422 Uncharacterized conser 92.4 6.8 0.00015 43.7 17.0 156 37-199 251-451 (665)
492 KOG0128 RNA-binding protein SA 92.2 29 0.00062 40.8 24.5 260 4-272 100-384 (881)
493 PRK15180 Vi polysaccharide bio 92.2 0.84 1.8E-05 49.2 9.6 124 145-268 301-424 (831)
494 TIGR02561 HrpB1_HrpK type III 92.2 1.9 4E-05 39.7 10.5 71 180-250 23-93 (153)
495 KOG3364 Membrane protein invol 92.2 2.6 5.6E-05 37.9 11.1 73 201-273 32-109 (149)
496 PRK01021 lpxB lipid-A-disaccha 92.2 1.5 3.2E-05 50.1 12.2 139 536-690 428-586 (608)
497 COG4976 Predicted methyltransf 92.2 0.22 4.7E-06 48.7 4.8 58 69-126 6-63 (287)
498 TIGR02561 HrpB1_HrpK type III 92.1 2.2 4.8E-05 39.2 10.9 81 28-108 14-94 (153)
499 COG0381 WecB UDP-N-acetylgluco 92.1 5.3 0.00012 42.9 15.5 297 364-684 10-350 (383)
500 KOG2422 Uncharacterized conser 92.0 8.6 0.00019 43.0 17.1 155 146-301 251-451 (665)
No 1
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=100.00 E-value=3.8e-146 Score=1139.94 Aligned_cols=714 Identities=41% Similarity=0.618 Sum_probs=676.6
Q ss_pred HHHHHHHHHHcCCCChhhHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 003891 2 LVASYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCY 81 (788)
Q Consensus 2 Ai~~~~kaL~~~P~~~~a~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 81 (788)
|..+|.++++..|..+-+ |.++|-.+..+|+...|+..|+++++++|+..++|++||.+|.+.+.|++|+.+|
T Consensus 203 a~~cYlkAi~~qp~fAia-------wsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y 275 (966)
T KOG4626|consen 203 AKACYLKAIETQPCFAIA-------WSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCY 275 (966)
T ss_pred hHHHHHHHHhhCCceeee-------ehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHH
Confidence 345566666666644333 6677888888999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHH
Q 003891 82 EKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALY 161 (788)
Q Consensus 82 ~kal~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~ 161 (788)
.+++.+.|+++.++.++|.+|+++|+.+-|+..|++++++.|+.++++.+++.++..+ |+..+|..+|.+++.
T Consensus 276 ~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~-------G~V~ea~~cYnkaL~ 348 (966)
T KOG4626|consen 276 LRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDK-------GSVTEAVDCYNKALR 348 (966)
T ss_pred HHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhc-------cchHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999888887777775 599999999999999
Q ss_pred hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 003891 162 YNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNL 241 (788)
Q Consensus 162 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l 241 (788)
+.|+.+++.+++|.+|.++|++++|..+|+++++..|+...++.++|.+|.++|++++|+.+|++++.+.|..++++.++
T Consensus 349 l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~Nm 428 (966)
T KOG4626|consen 349 LCPNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNM 428 (966)
T ss_pred hCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhhHHhHHHHhhhccCCCc
Q 003891 242 GVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHD 321 (788)
Q Consensus 242 a~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~a~~~~lla~~~l~~g~~ 321 (788)
|..|..+|+.+.|+++|.+|+..+|..++++.+||.+|...|+..+|++.|+.++++.|+.+++..|++.++.++..|.+
T Consensus 429 Gnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq~vcdw~D 508 (966)
T KOG4626|consen 429 GNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQIVCDWTD 508 (966)
T ss_pred chHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHHHHhcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred -----hHHHHHHHHHHHH--Hhhh----------------------------------ccCCCCCCCCCCCCCCeeEeec
Q 003891 322 -----DKLFEAHRDWGKR--FMRL----------------------------------YSQYTSWDNTKDPERPLVIGYV 360 (788)
Q Consensus 322 -----~~~~~~~~~~~~~--~~~~----------------------------------~~~~~~~~~~~~~~~~lriGyv 360 (788)
.++++.+++|.+. +... .+++..|.+-+.+++|||||||
T Consensus 509 ~d~~~~kl~sivrdql~~~rlpsvhP~hsm~ypl~~~~~~aia~k~a~~c~~~~~~~~k~pyth~~~l~~~~~rlrIGYv 588 (966)
T KOG4626|consen 509 YDKRMKKLVSIVRDQLEKNRLPSVHPHHSMLYPLSHILRKAIAAKHANLCLDKVHVLGKPPYTHPDNLKVKEGRLRIGYV 588 (966)
T ss_pred hHHHHHHHHHHHHHHHhhhcCCccCcccccccccchHHHHHHHHHHhhhhHHHHHhccCCCCCChhhCCCCcCceEEEee
Confidence 7888888988843 2221 1356778888888999999999
Q ss_pred cCCcccChhHHhhhhhhcccCCCceEEEEEeccccCChhhHHHHHHHhhhCCeEEEccCCCHHHHHHHHHhCCCcEEEeC
Q 003891 361 SPDYFTHSVSYFIEAPLVYHDYQNYKVVVYSAVVKADAKTIRFREKVMKKGGIWRDIYGIDEKKVAAMVREDKIDILVEL 440 (788)
Q Consensus 361 S~df~~H~v~~~~~~~l~~~dr~~fev~~Y~~~~~~D~~t~~~r~~~~~~~~~~~~~~~~~~~~~a~~i~~d~idilvdl 440 (788)
|+||++||+++||+.++.+|||+++|||||+.++.++ | .||.++.+.+++|.|+++++...+|..|++|+|||||.|
T Consensus 589 SsDFgnHp~Shlmqsv~gmHdr~kveVfcYals~~d~--t-~fR~kv~~e~ehf~Dls~i~~~kiA~~I~qD~I~ILvnl 665 (966)
T KOG4626|consen 589 SSDFGNHPTSHLMQSVPGMHDRSKVEVFCYALSVNDG--T-NFRDKVMKEAEHFVDLSQIPCNKIADKIRQDKIHILVNL 665 (966)
T ss_pred cccccCCchHHHhccCcCcCCccceEEEEEEeecCCC--c-hHHHHHHhhccceeehhcCChHHHHHHHhhcCceEEEec
Confidence 9999999999999999999999999999999988654 3 389999999999999999999999999999999999999
Q ss_pred CCCCCCCcccccccCCCCeEEecccCCCCCCCCCccEEEecCCCCCcCccCCCccceEEcCCCccccCCCC--------C
Q 003891 441 TGHTANNKLGMMACQPAPVQVTWIGYPNTTGLPTIDYRITDSLADPPETKQKHVEELIRLPECFLCYTPSP--------E 512 (788)
Q Consensus 441 ~g~t~~~~~~~~a~r~Apvq~~~~g~~~ttg~~~~Dy~i~d~~~~p~~~~~~~~e~l~~lp~~~~~~~~~~--------~ 512 (788)
.|||.|+|.++||+|||||||+|+|||+|||.++|||+|||.+++|++....|||||++||+||+|+++.+ .
T Consensus 666 nGyTkgarneifAlrPAPIQv~wlGyPgTtGa~~mDYiITDs~tsPl~~a~~ysEkLv~lPh~ffi~d~~qk~~~~~dpn 745 (966)
T KOG4626|consen 666 NGYTKGARNEIFALRPAPIQVMWLGYPGTTGATFMDYIITDSVTSPLELAQQYSEKLVYLPHCFFIGDHKQKNQDVLDPN 745 (966)
T ss_pred cccccccccceeeccCCceeEEeecCCCCCCCceeeEEeecccCChHHHHHHHHHHHhhCCceEEecCcccccccccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999876 6
Q ss_pred CCCCCCCCCCCCCCeEEEecCCCCcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcC
Q 003891 513 AGPVCPTPALTNGFITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLP 592 (788)
Q Consensus 513 ~~~~~~~~~~~~~~~~f~~~~~~~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~~~~l~~~~~~~gi~~~rv~~~~ 592 (788)
..|+++.++||+|+|||||||+++||+|.++++|++||++||||+||++..|+.++ ++++..++++|++++||+|.+
T Consensus 746 ~kP~r~~y~Lp~d~vvf~~FNqLyKidP~~l~~W~~ILk~VPnS~LwllrfPa~ge---~rf~ty~~~~Gl~p~riifs~ 822 (966)
T KOG4626|consen 746 NKPTRSQYGLPEDAVVFCNFNQLYKIDPSTLQMWANILKRVPNSVLWLLRFPAVGE---QRFRTYAEQLGLEPDRIIFSP 822 (966)
T ss_pred CCCCCCCCCCCCCeEEEeechhhhcCCHHHHHHHHHHHHhCCcceeEEEeccccch---HHHHHHHHHhCCCccceeecc
Confidence 66889999999999999999999999999999999999999999999999998665 799999999999999999999
Q ss_pred CcCCcHHHHHhcccccEeecCCCCCCchhHHHHhhhCCceeecCCCccCccchhHHHhhhCCcccccCCHHHHHHHHHHH
Q 003891 593 LILLNHDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIAKNEDEYVQLALQL 672 (788)
Q Consensus 593 ~~~~~~~~~~~~~~~Dv~Ld~~~~~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l~~~gl~~~ia~~~~~y~~~a~~l 672 (788)
... .+||+.++..+||+|||++++|+||++|.||+|||+|||+|+++++||++|+|..+|++++|+.+.+||+++||+|
T Consensus 823 va~-k~eHvrr~~LaDv~LDTplcnGhTTg~dvLw~GvPmVTmpge~lAsrVa~Sll~~~Gl~hliak~~eEY~~iaV~L 901 (966)
T KOG4626|consen 823 VAA-KEEHVRRGQLADVCLDTPLCNGHTTGMDVLWAGVPMVTMPGETLASRVAASLLTALGLGHLIAKNREEYVQIAVRL 901 (966)
T ss_pred ccc-hHHHHHhhhhhhhcccCcCcCCcccchhhhccCCceeecccHHHHHHHHHHHHHHcccHHHHhhhHHHHHHHHHHh
Confidence 887 6999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHHHhcCCCCCchhhhhhhhcccc
Q 003891 673 ASDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRNMWHRYCKGDVPSLKRMEMLQQQVVS 736 (788)
Q Consensus 673 ~~d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 736 (788)
++|.+.++.+|.++|..+..||+||..+|+..||++|.+||.+||.|++|..+||+.+|++..+
T Consensus 902 atd~~~L~~lr~~l~~~r~~splfd~~q~~~~LE~~y~~MW~~y~~G~~p~h~~me~~~e~~hd 965 (966)
T KOG4626|consen 902 ATDKEYLKKLRAKLRKARASSPLFDTKQYAKGLERLYLQMWKKYCSGEVPDHRRMENLQEEPHD 965 (966)
T ss_pred hcCHHHHHHHHHHHHHHhcCCCccCchHHHHHHHHHHHHHHHHhccCCCCchHHHhccccCcCC
Confidence 9999999999999999999999999999999999999999999999999999999999998765
No 2
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.2e-102 Score=815.72 Aligned_cols=550 Identities=30% Similarity=0.482 Sum_probs=463.5
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHH--HHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 003891 148 DINQGVAYYKKALYYNWHYADAMYN--LGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQ 225 (788)
Q Consensus 148 ~~~~A~~~~~~al~~~p~~~~~~~~--la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~ 225 (788)
.-.-++..+...+.+++.++..+.. +...+...+....+......++..+|.+..+..+++......|....+...+.
T Consensus 46 ~~~~~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~ 125 (620)
T COG3914 46 LQALAIYALLLGIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADIS 125 (620)
T ss_pred chhHHHHHHHccCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHH
Confidence 3333666666666777777776433 46677778888888888999999999999999999988888777666665555
Q ss_pred H-HHhhCCCCHHHHHHH------HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 003891 226 M-ALSIKPNFSQSLNNL------GVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKI 298 (788)
Q Consensus 226 ~-al~~~p~~~~~~~~l------a~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l 298 (788)
+ +....|++.+....+ +......|+..++...++++..+.|.++.....+.....++-.+. ..
T Consensus 126 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~~~~~~~~~~~r~~~cs~~----------~~ 195 (620)
T COG3914 126 EIAEWLSPDNAEFLGHLIRFYQLGRYLKLLGRTAEAELALERAVDLLPKYPRVLGALMTARQEQCSWP----------EE 195 (620)
T ss_pred HHHHhcCcchHHHHhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhhhhHhHHHHHHHHhccch----------hc
Confidence 5 778888887755544 888888899999999999999999998776665555533333322 33
Q ss_pred CCCChhhHHhHHHHh-----hhccCCCchHHHHHHHHHHHHHhhh---ccCCCCCC-CCCCCCCCeeEeeccCCcccChh
Q 003891 299 DPDSRNAGQNRLLAM-----NYINEGHDDKLFEAHRDWGKRFMRL---YSQYTSWD-NTKDPERPLVIGYVSPDYFTHSV 369 (788)
Q Consensus 299 ~p~~~~a~~~~lla~-----~~l~~g~~~~~~~~~~~~~~~~~~~---~~~~~~~~-~~~~~~~~lriGyvS~df~~H~v 369 (788)
.|.+........+.. .|+.. +...-+....+..+.+... ..+++.|. +.+.+++|+||||+|+|++.|+|
T Consensus 196 ~~tnl~~~~~~~~~~~~~~~~~~~d-~p~~~l~~~~q~~~i~~~~~~~~~~~~~~~~~~~~~~~rlRvGylS~dlr~Hav 274 (620)
T COG3914 196 APTNLLSQLALFLGIYGFSLAYLAD-DPLKNLAIANQLLKILSQNAPELVRFPIRDENIKRNGKRLRVGYLSSDLRSHAV 274 (620)
T ss_pred cchHHHHHHHHHhhccccchhhhcc-chhhhHHHHHHHHHHhcccCCCccccccchhhccccccceeEEEeccccccchH
Confidence 344433333322221 22221 1233333444444444422 23455555 23456899999999999999999
Q ss_pred HHhhhhhhcccCCCceEEEEEecc-ccCChhhHHHHHHHhhhCCeEEEccCCCHHHHHHHHHhCCCcEEEeCCCCCCCCc
Q 003891 370 SYFIEAPLVYHDYQNYKVVVYSAV-VKADAKTIRFREKVMKKGGIWRDIYGIDEKKVAAMVREDKIDILVELTGHTANNK 448 (788)
Q Consensus 370 ~~~~~~~l~~~dr~~fev~~Y~~~-~~~D~~t~~~r~~~~~~~~~~~~~~~~~~~~~a~~i~~d~idilvdl~g~t~~~~ 448 (788)
+|++.+++++|||++|||++|+++ ++.|+.+.|++..+ .+|.++.+|++.++|++|+.|+||||||++|||..+|
T Consensus 275 g~l~~~v~e~hDRdkfEvfay~~g~~~~dal~~rI~a~~----~~~~~~~~~dd~e~a~~I~~d~IdILvDl~g~T~d~r 350 (620)
T COG3914 275 GFLLRWVFEYHDRDKFEVFAYSLGPPHTDALQERISAAV----EKWYPIGRMDDAEIANAIRTDGIDILVDLDGHTVDTR 350 (620)
T ss_pred HHHHHHHHHHhchhheEEEEEecCCCCchhHHHHHHHhh----hheeccCCcCHHHHHHHHHhcCCeEEEeccCceeccc
Confidence 999999999999999999999998 66788888888876 5799999999999999999999999999999999999
Q ss_pred ccccccCCCCeEEecccCCCCCCCCCccEEEecCCCCCcCccCCCccceEEcCCCccccCCCCCCCCC-----CCCCCCC
Q 003891 449 LGMMACQPAPVQVTWIGYPNTTGLPTIDYRITDSLADPPETKQKHVEELIRLPECFLCYTPSPEAGPV-----CPTPALT 523 (788)
Q Consensus 449 ~~~~a~r~Apvq~~~~g~~~ttg~~~~Dy~i~d~~~~p~~~~~~~~e~l~~lp~~~~~~~~~~~~~~~-----~~~~~~~ 523 (788)
..|||+|||||||+|+|||+|||+|.|||||+|+++.||+++.+|||||+|||. ||.|.....++ +..+|||
T Consensus 351 ~~v~A~RpAPiqvswlGy~aT~g~p~~DY~I~D~y~vPp~ae~yysEkl~RLp~---cy~p~d~~~~v~p~~sR~~lglp 427 (620)
T COG3914 351 CQVFAHRPAPIQVSWLGYPATTGSPNMDYFISDPYTVPPTAEEYYSEKLWRLPQ---CYQPVDGFEPVTPPPSRAQLGLP 427 (620)
T ss_pred hhhhhcCCCceEEeecccccccCCCcceEEeeCceecCchHHHHHHHHHHhccc---ccCCCCCcccCCCCcchhhcCCC
Confidence 999999999999999999999999999999999999999999999999999994 66665543333 4458999
Q ss_pred CCCeEEEecCCCCcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHHHHh
Q 003891 524 NGFITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQA 603 (788)
Q Consensus 524 ~~~~~f~~~~~~~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~~~~l~~~~~~~gi~~~rv~~~~~~~~~~~~~~~ 603 (788)
+++|||||||+.+|++|+++++|++||+++|+|+|||+++| ..+.+.++|+..+++.||+.+|++|+|..+ .++|++.
T Consensus 428 ~~avVf~c~~n~~K~~pev~~~wmqIL~~vP~Svl~L~~~~-~~~~~~~~l~~la~~~Gv~~eRL~f~p~~~-~~~h~a~ 505 (620)
T COG3914 428 EDAVVFCCFNNYFKITPEVFALWMQILSAVPNSVLLLKAGG-DDAEINARLRDLAEREGVDSERLRFLPPAP-NEDHRAR 505 (620)
T ss_pred CCeEEEEecCCcccCCHHHHHHHHHHHHhCCCcEEEEecCC-CcHHHHHHHHHHHHHcCCChhheeecCCCC-CHHHHHh
Confidence 99999999999999999999999999999999999999887 677899999999999999999999999998 6799999
Q ss_pred cccccEeecCCCCCCchhHHHHhhhCCceeecCCCccCccchhHHHhhhCCcccccCCHHHHHHHHHHHhcCHHHHHHHH
Q 003891 604 YSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIAKNEDEYVQLALQLASDVTALANLR 683 (788)
Q Consensus 604 ~~~~Dv~Ld~~~~~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l~~~gl~~~ia~~~~~y~~~a~~l~~d~~~~~~~r 683 (788)
|..+||+|||+||+||||++|||||||||||+.|++|+||+|+||++++|++|+||.|+++||++||++++|...+++.|
T Consensus 506 ~~iADlvLDTyPY~g~TTa~daLwm~vPVlT~~G~~FasR~~~si~~~agi~e~vA~s~~dYV~~av~~g~dral~q~~r 585 (620)
T COG3914 506 YGIADLVLDTYPYGGHTTASDALWMGVPVLTRVGEQFASRNGASIATNAGIPELVADSRADYVEKAVAFGSDRALRQQVR 585 (620)
T ss_pred hchhheeeecccCCCccchHHHHHhcCceeeeccHHHHHhhhHHHHHhcCCchhhcCCHHHHHHHHHHhcccHHHHHhhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCCCCChHHHHHHHHHHHHHHHHHHh
Q 003891 684 MSLRDLMSKSPVCDGQNFALGLESTYRNMWHRYC 717 (788)
Q Consensus 684 ~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~ 717 (788)
..++..+.++||||++.|++.||.+|.+||.++.
T Consensus 586 ~~l~~~r~tspL~d~~~far~le~~y~~M~~~y~ 619 (620)
T COG3914 586 AELKRSRQTSPLFDPKAFARKLETLYWGMWSEYI 619 (620)
T ss_pred HHHHhccccCcccCHHHHHHHHHHHHHHHHHhhc
Confidence 9999999999999999999999999999999874
No 3
>PF13844 Glyco_transf_41: Glycosyl transferase family 41; PDB: 3PE4_C 3PE3_D 3TAX_C 2XGO_A 2JLB_B 2XGM_A 2VSY_B 2XGS_B 2VSN_A.
Probab=100.00 E-value=6.9e-95 Score=775.40 Aligned_cols=351 Identities=45% Similarity=0.753 Sum_probs=284.6
Q ss_pred eeEeeccCCcccChhHHhhhhhhcccCCCceEEEEEeccccCC-hhhHHHHHHHhhhCCeEEEccCCC-HHHHHHHHHhC
Q 003891 355 LVIGYVSPDYFTHSVSYFIEAPLVYHDYQNYKVVVYSAVVKAD-AKTIRFREKVMKKGGIWRDIYGID-EKKVAAMVRED 432 (788)
Q Consensus 355 lriGyvS~df~~H~v~~~~~~~l~~~dr~~fev~~Y~~~~~~D-~~t~~~r~~~~~~~~~~~~~~~~~-~~~~a~~i~~d 432 (788)
|||||||+||++||+++|+.+++++|||++|||+||+.++.++ ..+++++. .+++|+++.+++ +.++|++|++|
T Consensus 1 LRIGyvS~Df~~Hpv~~l~~~ll~~hDr~rfev~~Ys~~~~d~~~~~~~~~~----~~~~~~dl~~~~~~~~~A~~Ir~D 76 (468)
T PF13844_consen 1 LRIGYVSSDFRNHPVGHLLQPLLENHDRSRFEVFCYSLGPDDGDTFRQRIRA----EADHFVDLSGLSDDAEAAQRIRAD 76 (468)
T ss_dssp EEEEEEES-SSSSHHHHHHHHHHHHHHHHTEEEEEEESS---SCHHHHHHHH----HSEEEEEEEE-TTSHHHHHHHHHT
T ss_pred CEEEEECCcchhCHHHHHHHHHHHhcCcccEEEEEEECCCCCCcHHHHHHHH----hCCeEEECccCCcHHHHHHHHHHC
Confidence 7999999999999999999999999999999999999987533 34555544 458999999986 68999999999
Q ss_pred CCcEEEeCCCCCCCCcccccccCCCCeEEecccCCCCCCCCCccEEEecCCCCCcCccCCCccceEEcCCCccccCCC--
Q 003891 433 KIDILVELTGHTANNKLGMMACQPAPVQVTWIGYPNTTGLPTIDYRITDSLADPPETKQKHVEELIRLPECFLCYTPS-- 510 (788)
Q Consensus 433 ~idilvdl~g~t~~~~~~~~a~r~Apvq~~~~g~~~ttg~~~~Dy~i~d~~~~p~~~~~~~~e~l~~lp~~~~~~~~~-- 510 (788)
+|||||||+|||.++|+.|||+|||||||+|||||+|||+++|||+|+|++++|++.+.+|+|||+|||++|+|+++.
T Consensus 77 ~IDILVDL~GhT~~~R~~ifA~RpAPVQvswlGyp~TtG~~~mDY~ItD~~~~P~~~~~~ysEkLirLP~sy~~~d~~~~ 156 (468)
T PF13844_consen 77 GIDILVDLSGHTAGNRLEIFALRPAPVQVSWLGYPGTTGLPAMDYIITDPVTDPPEAEEHYSEKLIRLPHSYFCNDHRQM 156 (468)
T ss_dssp T-SEEEESSTSSTSSSHHHHHT-SSSEEEEESSSSS---STT--EEEEETTTS-GGGGGG-SSEEEEESS-S----HHHH
T ss_pred CCCEEEeCCCcCCCCHhHHHhcCCcceEEEecCCCcccCCcccCEEEECCCcCCcccccCCccceEEccCceEECChHHh
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999985110
Q ss_pred --------------------------------------------------------------------------------
Q 003891 511 -------------------------------------------------------------------------------- 510 (788)
Q Consensus 511 -------------------------------------------------------------------------------- 510 (788)
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (468)
T PF13844_consen 157 FPHLKERIVLEEKDDSRVVDNVAVINATDLSPLLEKTEVKDTVRENIVLSGDGKDATSTEVELPVLEQPTTTPIEQMIAS 236 (468)
T ss_dssp -GGGSS-EEEE--------SSSEEEE-TTHHHHHHTSST-EEEEE---------------EEEEEEESSHHHHHHHHHHH
T ss_pred hhhhhhceEeccccCCcccchhhhhhhhcCchhhhhcchHHHHHHHHhhcCCchhcccceEecccccCccHHHHHHHHHc
Confidence
Q ss_pred ----------------------------CCCC-----CCCCCCCCCCCCeEEEecCCCCcCCHHHHHHHHHHHhHcCCcE
Q 003891 511 ----------------------------PEAG-----PVCPTPALTNGFITFGSFNNLAKITPKVLQVWARILCAVPNSR 557 (788)
Q Consensus 511 ----------------------------~~~~-----~~~~~~~~~~~~~~f~~~~~~~K~~~~~~~~~~~il~~~p~~~ 557 (788)
.+.| +.+...+||+++|||||||+++||+|+++++|++||+++|+|+
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~R~~~gLp~d~vvF~~fn~~~KI~p~~l~~W~~IL~~vP~S~ 316 (468)
T PF13844_consen 237 GQVQTSVNGVVVQNGLATTQTNNKAATGEEVPQNIVVTTRAQYGLPEDAVVFGSFNNLFKISPETLDLWARILKAVPNSR 316 (468)
T ss_dssp T-SEEEETTEEEEECCGHHHH-HHHHTTSS--SSEEEEETGGGT--SSSEEEEE-S-GGG--HHHHHHHHHHHHHSTTEE
T ss_pred CCeeEeECCEEeecccchhhhhccccCCccCCccccccCHHHcCCCCCceEEEecCccccCCHHHHHHHHHHHHhCCCcE
Confidence 0001 1123457899999999999999999999999999999999999
Q ss_pred EEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHHHHhcccccEeecCCCCCCchhHHHHhhhCCceeecCC
Q 003891 558 LVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAG 637 (788)
Q Consensus 558 l~l~~~~~~~~~~~~~l~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~~Dv~Ld~~~~~g~~t~~eal~~GvPvvt~~g 637 (788)
|||+..+. ..+++++++++++||+++||+|.+..+ .++|+..|+.+||+|||||||||||++|||||||||||++|
T Consensus 317 L~L~~~~~---~~~~~l~~~~~~~Gv~~~Ri~f~~~~~-~~ehl~~~~~~DI~LDT~p~nG~TTt~dALwmGVPvVTl~G 392 (468)
T PF13844_consen 317 LWLLRFPA---SGEARLRRRFAAHGVDPDRIIFSPVAP-REEHLRRYQLADICLDTFPYNGGTTTLDALWMGVPVVTLPG 392 (468)
T ss_dssp EEEEETST---THHHHHHHHHHHTTS-GGGEEEEE----HHHHHHHGGG-SEEE--SSS--SHHHHHHHHHT--EEB---
T ss_pred EEEeeCCH---HHHHHHHHHHHHcCCChhhEEEcCCCC-HHHHHHHhhhCCEEeeCCCCCCcHHHHHHHHcCCCEEeccC
Confidence 99987653 345789999999999999999999876 79999999999999999999999999999999999999999
Q ss_pred CccCccchhHHHhhhCCcccccCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHH
Q 003891 638 SVHAHNVGVSLLTKVGLKHLIAKNEDEYVQLALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRNMW 713 (788)
Q Consensus 638 ~~~~~r~~~~~l~~~gl~~~ia~~~~~y~~~a~~l~~d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ 713 (788)
+.++||+|+|+|+++|++||||.|+++|+++|++|++|++.|+++|+++|+++.+|||||.++|+++||++|++||
T Consensus 393 ~~~~sR~~aSiL~~lGl~ElIA~s~~eYv~~Av~La~D~~~l~~lR~~Lr~~~~~SpLfd~~~~ar~lE~a~~~mW 468 (468)
T PF13844_consen 393 ETMASRVGASILRALGLPELIADSEEEYVEIAVRLATDPERLRALRAKLRDRRSKSPLFDPKRFARNLEAAYRQMW 468 (468)
T ss_dssp SSGGGSHHHHHHHHHT-GGGB-SSHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHSGGG-HHHHHHHHHHHHHHHH
T ss_pred CCchhHHHHHHHHHcCCchhcCCCHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999
No 4
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=100.00 E-value=4.4e-37 Score=322.78 Aligned_cols=320 Identities=31% Similarity=0.513 Sum_probs=294.2
Q ss_pred HHHHHHHHHHcCCCChhhHHHHHHHHHH---------------------------HHHHHHHcCChHHHHHHHHHHHHhC
Q 003891 2 LVASYHKALSADPSYKPAAECLAIVLTD---------------------------LGTSLKLAGNTQDGIQKYYEALKID 54 (788)
Q Consensus 2 Ai~~~~kaL~~~P~~~~a~~~la~~l~~---------------------------lg~~~~~~g~~~~A~~~~~~al~~~ 54 (788)
|+..|+.++++.|++.+++.++|.++.. +|..+...|+..+|..+|.++++.+
T Consensus 135 al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~q 214 (966)
T KOG4626|consen 135 ALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLKAEGRLEEAKACYLKAIETQ 214 (966)
T ss_pred HHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHHhhcccchhHHHHHHHHhhC
Confidence 6777888888888888887777666533 6777788888899999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHH
Q 003891 55 PHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAI 134 (788)
Q Consensus 55 p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 134 (788)
|..+-+|.+||.++..+|+...|++.|+++++++|+..++|++||.+|...+.+++|+.+|++++.+.|++. .
T Consensus 215 p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A-------~ 287 (966)
T KOG4626|consen 215 PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHA-------V 287 (966)
T ss_pred CceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcch-------h
Confidence 988889999999999999999999999999999999999999999999999999999999999999998874 4
Q ss_pred HHHHhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Q 003891 135 ALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDR 214 (788)
Q Consensus 135 ~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 214 (788)
++.+++.+|..+|.++-|+..|++++++.|+.++++.++|.++...|+..+|..+|.+++.+.|..+++.+++|.+|.++
T Consensus 288 a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~ 367 (966)
T KOG4626|consen 288 AHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQ 367 (966)
T ss_pred hccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh
Confidence 56678888888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 003891 215 DNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQ 294 (788)
Q Consensus 215 g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~ 294 (788)
|++++|..+|+++++..|+.+.++.+||.+|.++|++++|+.+|++++.+.|..++++.++|..|..+|+...|++.|.+
T Consensus 368 ~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~r 447 (966)
T KOG4626|consen 368 GKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTR 447 (966)
T ss_pred ccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhCCCChhhHHhHHHHhhhccCCCchHHHHHHHH
Q 003891 295 CLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHRD 330 (788)
Q Consensus 295 al~l~p~~~~a~~~~lla~~~l~~g~~~~~~~~~~~ 330 (788)
++.++|...+++.| ++..|-..|.-.++...++.
T Consensus 448 AI~~nPt~AeAhsN--Lasi~kDsGni~~AI~sY~~ 481 (966)
T KOG4626|consen 448 AIQINPTFAEAHSN--LASIYKDSGNIPEAIQSYRT 481 (966)
T ss_pred HHhcCcHHHHHHhh--HHHHhhccCCcHHHHHHHHH
Confidence 99999999999998 57788888888888776664
No 5
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=100.00 E-value=3.4e-30 Score=294.91 Aligned_cols=529 Identities=12% Similarity=0.042 Sum_probs=348.3
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 003891 152 GVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIK 231 (788)
Q Consensus 152 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~ 231 (788)
++.-........|++.+++.++|.+....|.+++|+..++.++++.|++..+..+++.++.+++++++|+..+++++..+
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~ 150 (694)
T PRK15179 71 ALPELLDYVRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG 150 (694)
T ss_pred hHHHHHHHHHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC
Confidence 33333344455788899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhhHHhHHH
Q 003891 232 PNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLL 311 (788)
Q Consensus 232 p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~a~~~~ll 311 (788)
|+++..++.+|.++.+.|++++|+.+|++++..+|+++.++..+|.++...|+.++|...|+++++...+-...+.+++.
T Consensus 151 p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 230 (694)
T PRK15179 151 SSSAREILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRRLV 230 (694)
T ss_pred CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999997776655444432
Q ss_pred HhhhccCCCchHHHHHHHHHHH---------------HHhhhccCCCCCCCCCCCCCCe-eEeeccCCcccChhHHhhhh
Q 003891 312 AMNYINEGHDDKLFEAHRDWGK---------------RFMRLYSQYTSWDNTKDPERPL-VIGYVSPDYFTHSVSYFIEA 375 (788)
Q Consensus 312 a~~~l~~g~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~l-riGyvS~df~~H~v~~~~~~ 375 (788)
-++- .+..++++.- .....+.....-.-...|.++. ||-++-..+..=-...++..
T Consensus 231 ~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rIl~vi~sl~~GGAEr~~~~ 302 (694)
T PRK15179 231 DLNA--------DLAALRRLGVEGDGRDVPVSILVLEKMLQEIGRRRNAEYDAGPESFVGPVLMINGSLGAGGAERQFVN 302 (694)
T ss_pred HHHH--------HHHHHHHcCcccccCCCceeeeeHHHHHHHHhhcCcccccCCCCCCcceEEEEeCCCCCCcHHHHHHH
Confidence 1111 1111111100 0000000001111123456666 77777555543233344445
Q ss_pred hhcccCCCc--------------eEEEEEeccc-c-CChhhHHHHHHHhhhCCeEEEccC--------------------
Q 003891 376 PLVYHDYQN--------------YKVVVYSAVV-K-ADAKTIRFREKVMKKGGIWRDIYG-------------------- 419 (788)
Q Consensus 376 ~l~~~dr~~--------------fev~~Y~~~~-~-~D~~t~~~r~~~~~~~~~~~~~~~-------------------- 419 (788)
+..+.++.+ .+|+|.+... . .+.....++..-.. -.+....+
T Consensus 303 La~~l~~~~~~~~~~~g~g~~~~~~V~~~~~~~~~g~~~~~~~L~~~Gv~--v~~l~~~~~~~~~~~~~~~~~~~~~~~~ 380 (694)
T PRK15179 303 TAVALQSAIQQGQSIAGYGVLGPVQVVCRSLRSREGADFFAATLADAGIP--VSVYSDMQAWGGCEFSSLLAPYREYLRF 380 (694)
T ss_pred HHHHHHhcccCcccccCccCCCCcEEEEEecccccCcchHHHHHHhCCCe--EEEeccCCccCcccccccchhhHHHhhh
Confidence 555555553 3566654432 1 12333333321000 00111110
Q ss_pred CC------HHHHHHHHHhCCCcEEEeCCCCCCC-CcccccccCC--CCeEE-ecccCCCCCCC-C-------------Cc
Q 003891 420 ID------EKKVAAMVREDKIDILVELTGHTAN-NKLGMMACQP--APVQV-TWIGYPNTTGL-P-------------TI 475 (788)
Q Consensus 420 ~~------~~~~a~~i~~d~idilvdl~g~t~~-~~~~~~a~r~--Apvq~-~~~g~~~ttg~-~-------------~~ 475 (788)
++ ...+.+.|++.++||+.- |+.. +.++.++.+. .|+-+ ++-|++..... . .+
T Consensus 381 lp~~~~~~~~~L~~~lk~~kpDIVH~---h~~~a~~lg~lAa~~~gvPvIv~t~h~~~~~~~~~~~~~~~~~l~~~l~~~ 457 (694)
T PRK15179 381 LPKQIIEGTTKLTDVMRSSVPSVVHI---WQDGSIFACALAALLAGVPRIVLSVRTMPPVDRPDRYRVEYDIIYSELLKM 457 (694)
T ss_pred cchhHHHHHHHHHHHHHHcCCcEEEE---eCCcHHHHHHHHHHHcCCCEEEEEeCCCccccchhHHHHHHHHHHHHHHhc
Confidence 00 156778899999999962 3221 2233444433 35433 33233221110 0 01
Q ss_pred --cEEEecCCCCCcCc---cCCCccceEEcCCCcc--ccCCCCCCCC--CCCCCCCCCCCeEEEecCCC--CcCCHHHHH
Q 003891 476 --DYRITDSLADPPET---KQKHVEELIRLPECFL--CYTPSPEAGP--VCPTPALTNGFITFGSFNNL--AKITPKVLQ 544 (788)
Q Consensus 476 --Dy~i~d~~~~p~~~---~~~~~e~l~~lp~~~~--~~~~~~~~~~--~~~~~~~~~~~~~f~~~~~~--~K~~~~~~~ 544 (788)
+.+|+.....-... -..-.+++..+|+..- .|.|.+.... ......++++.+++|+++|+ .|..+.+++
T Consensus 458 ~~~i~Vs~S~~~~~~l~~~~g~~~~kI~VI~NGVd~~~f~~~~~~~~~~~~~~~~~~~~~~vIg~VGRL~~~KG~~~LI~ 537 (694)
T PRK15179 458 RGVALSSNSQFAAHRYADWLGVDERRIPVVYNGLAPLKSVQDDACTAMMAQFDARTSDARFTVGTVMRVDDNKRPFLWVE 537 (694)
T ss_pred CCeEEEeCcHHHHHHHHHHcCCChhHEEEECCCcCHHhcCCCchhhHHHHhhccccCCCCeEEEEEEeCCccCCHHHHHH
Confidence 12233211000000 0112357777776421 1222111100 00012245667789998876 899999999
Q ss_pred HHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHHHHhcccccEeecCCCC-CCchhHH
Q 003891 545 VWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPY-AGTTTTC 623 (788)
Q Consensus 545 ~~~~il~~~p~~~l~l~~~~~~~~~~~~~l~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~~Dv~Ld~~~~-~g~~t~~ 623 (788)
+++++++..|+.+|+|+|.| +.++.+++.++++|+. ++|.|.|..+ +....|+.+||++-|+.+ +.+.+++
T Consensus 538 A~a~l~~~~p~~~LvIvG~G----~~~~~L~~l~~~lgL~-~~V~flG~~~---dv~~ll~aaDv~VlpS~~Egfp~vlL 609 (694)
T PRK15179 538 AAQRFAASHPKVRFIMVGGG----PLLESVREFAQRLGMG-ERILFTGLSR---RVGYWLTQFNAFLLLSRFEGLPNVLI 609 (694)
T ss_pred HHHHHHHHCcCeEEEEEccC----cchHHHHHHHHHcCCC-CcEEEcCCcc---hHHHHHHhcCEEEeccccccchHHHH
Confidence 99999999999999999987 5678899999999998 9999999854 566778889999999987 5599999
Q ss_pred HHhhhCCceeecCCCccCccchh-HHHhhhCCcccccC--C--HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCCCCCh
Q 003891 624 ESLYMGVPCVTMAGSVHAHNVGV-SLLTKVGLKHLIAK--N--EDEYVQLALQLASDVTALANLRMSLRDLMSKSPVCDG 698 (788)
Q Consensus 624 eal~~GvPvvt~~g~~~~~r~~~-~~l~~~gl~~~ia~--~--~~~y~~~a~~l~~d~~~~~~~r~~~~~~~~~~~~~~~ 698 (788)
|||+||+|||+ +++++ .-+..-|..+++.. | .+++.+...++..+......++++.+++..+ .|+.
T Consensus 610 EAMA~G~PVVa-------t~~gG~~EiV~dg~~GlLv~~~d~~~~~La~aL~~ll~~l~~~~~l~~~ar~~a~~--~FS~ 680 (694)
T PRK15179 610 EAQFSGVPVVT-------TLAGGAGEAVQEGVTGLTLPADTVTAPDVAEALARIHDMCAADPGIARKAADWASA--RFSL 680 (694)
T ss_pred HHHHcCCeEEE-------ECCCChHHHccCCCCEEEeCCCCCChHHHHHHHHHHHhChhccHHHHHHHHHHHHH--hCCH
Confidence 99999999998 44441 11111244455543 3 3467777766666555555667777766543 4999
Q ss_pred HHHHHHHHHHHH
Q 003891 699 QNFALGLESTYR 710 (788)
Q Consensus 699 ~~~~~~~e~~~~ 710 (788)
+.+++++++.|+
T Consensus 681 ~~~~~~~~~lY~ 692 (694)
T PRK15179 681 NQMIASTVRCYQ 692 (694)
T ss_pred HHHHHHHHHHhC
Confidence 999999999995
No 6
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.96 E-value=7.3e-27 Score=272.84 Aligned_cols=312 Identities=20% Similarity=0.207 Sum_probs=222.1
Q ss_pred HHHHHHHHHHcCCCChhhHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 003891 2 LVASYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCY 81 (788)
Q Consensus 2 Ai~~~~kaL~~~P~~~~a~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 81 (788)
|++.|+++++..|+ .. .+..+|.++...|++++|+..++++++++|++..+++.+|.+|..+|++++|+..|
T Consensus 146 Ai~~y~~al~~~p~-~~-------~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~lg~~~eA~~~~ 217 (615)
T TIGR00990 146 AIKLYSKAIECKPD-PV-------YYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGKYADALLDL 217 (615)
T ss_pred HHHHHHHHHhcCCc-hH-------HHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 88999999999996 33 37788889999999999999999999999999999999999999999999887655
Q ss_pred HHHHHh--------------------------------------------------------------------------
Q 003891 82 EKAALE-------------------------------------------------------------------------- 87 (788)
Q Consensus 82 ~kal~~-------------------------------------------------------------------------- 87 (788)
.++...
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 297 (615)
T TIGR00990 218 TASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETGNGQLQL 297 (615)
T ss_pred HHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccccccccchHHH
Confidence 433211
Q ss_pred -----------------------------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH
Q 003891 88 -----------------------------RPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTD 138 (788)
Q Consensus 88 -----------------------------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~ 138 (788)
.|....++..+|.++..+|++++|+..|+++++++|++...+..++.
T Consensus 298 ~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~---- 373 (615)
T TIGR00990 298 GLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRAS---- 373 (615)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHH----
Confidence 13334456666777777777777777777777777766544444333
Q ss_pred hhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHH
Q 003891 139 LGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLD 218 (788)
Q Consensus 139 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 218 (788)
++...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..|+++++++|++...+.++|.++..+|+++
T Consensus 374 ---~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~ 450 (615)
T TIGR00990 374 ---MNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIA 450 (615)
T ss_pred ---HHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHH
Confidence 33345577777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH------HHHHH-HHHHcCCHHHHHHH
Q 003891 219 KAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAY------NNLGV-LYRDAGSISLAIDA 291 (788)
Q Consensus 219 eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~------~~la~-~~~~~g~~~eA~~~ 291 (788)
+|+..|+++++..|+++.++..+|.++...|++++|++.|++++.+.|+....+ ...+. ++...|++++|++.
T Consensus 451 eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~ 530 (615)
T TIGR00990 451 SSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENL 530 (615)
T ss_pred HHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 777777777777777777777777777777777777777777777766542221 22222 23335777777777
Q ss_pred HHHHHhhCCCChhhHHhHHHHhhhccCCCchHHHHHHHH
Q 003891 292 YEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHRD 330 (788)
Q Consensus 292 ~~~al~l~p~~~~a~~~~lla~~~l~~g~~~~~~~~~~~ 330 (788)
++++++++|++..++.. ++..+...|+.+++...+++
T Consensus 531 ~~kAl~l~p~~~~a~~~--la~~~~~~g~~~eAi~~~e~ 567 (615)
T TIGR00990 531 CEKALIIDPECDIAVAT--MAQLLLQQGDVDEALKLFER 567 (615)
T ss_pred HHHHHhcCCCcHHHHHH--HHHHHHHccCHHHHHHHHHH
Confidence 77777777766654433 45666667776666554443
No 7
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.96 E-value=4.2e-26 Score=265.75 Aligned_cols=313 Identities=12% Similarity=0.039 Sum_probs=271.9
Q ss_pred HHHHHHHHHHcCCCChhhHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 003891 2 LVASYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCY 81 (788)
Q Consensus 2 Ai~~~~kaL~~~P~~~~a~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 81 (788)
|+..++.++...|++.++ ++.+|......|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|
T Consensus 61 A~~l~~~~l~~~p~~~~~-------l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l 133 (656)
T PRK15174 61 GLTLLSDRVLTAKNGRDL-------LRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLA 133 (656)
T ss_pred hHHHhHHHHHhCCCchhH-------HHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHH
Confidence 678899999999999988 5566666678999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHH
Q 003891 82 EKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALY 161 (788)
Q Consensus 82 ~kal~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~ 161 (788)
+++++.+|++..++..++.++...|++++|+..+++++...|++...+.... .+...|++++|+..++++++
T Consensus 134 ~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~~--------~l~~~g~~~eA~~~~~~~l~ 205 (656)
T PRK15174 134 EQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATCL--------SFLNKSRLPEDHDLARALLP 205 (656)
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHHH--------HHHHcCCHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999876554321 24457899999999999888
Q ss_pred hCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHH----HHHHHHHHHhhCCCCHH
Q 003891 162 YNWH-YADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDK----AVECYQMALSIKPNFSQ 236 (788)
Q Consensus 162 ~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~e----A~~~~~~al~~~p~~~~ 236 (788)
.+|. .......++.++...|++++|+..++++++.+|++..++.++|.++...|++++ |+..|+++++.+|++..
T Consensus 206 ~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~ 285 (656)
T PRK15174 206 FFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVR 285 (656)
T ss_pred cCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHH
Confidence 8753 344455667888899999999999999999999999999999999999999885 79999999999999999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhhHHhHHHHhhhc
Q 003891 237 SLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYI 316 (788)
Q Consensus 237 ~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~a~~~~lla~~~l 316 (788)
++..+|.++...|++++|+..++++++++|+++.++..+|.++...|++++|+..|+++++.+|++...... .+..+.
T Consensus 286 a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~--~a~al~ 363 (656)
T PRK15174 286 IVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRY--AAAALL 363 (656)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHH--HHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999987654332 355566
Q ss_pred cCCCchHHHHHHHHH
Q 003891 317 NEGHDDKLFEAHRDW 331 (788)
Q Consensus 317 ~~g~~~~~~~~~~~~ 331 (788)
..|+.+++.+.+++.
T Consensus 364 ~~G~~deA~~~l~~a 378 (656)
T PRK15174 364 QAGKTSEAESVFEHY 378 (656)
T ss_pred HCCCHHHHHHHHHHH
Confidence 778877777665543
No 8
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.96 E-value=3.5e-26 Score=267.16 Aligned_cols=281 Identities=18% Similarity=0.204 Sum_probs=182.6
Q ss_pred HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 003891 21 ECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGV 100 (788)
Q Consensus 21 ~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~ 100 (788)
...+..+..+|..++..|+|++|+..|+++++..|+ +..+.++|.+|..+|++++|+..++++++++|++..+++.+|.
T Consensus 124 ~~~a~~~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~-~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~ 202 (615)
T TIGR00990 124 KKYAAKLKEKGNKAYRNKDFNKAIKLYSKAIECKPD-PVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRAN 202 (615)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 345777899999999999999999999999999996 7789999999999999999999999999999999999999999
Q ss_pred HHHHCCCHHHHHHHHHHHHhhCCCcHHH------------------------------H---------------------
Q 003891 101 IYKNRGDLESAIACYERCLAVSPNFEIA------------------------------K--------------------- 129 (788)
Q Consensus 101 ~~~~~g~~~~A~~~~~~al~~~p~~~~~------------------------------~--------------------- 129 (788)
+|..+|++++|+..|..+....+..... +
T Consensus 203 a~~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (615)
T TIGR00990 203 AYDGLGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLED 282 (615)
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhc
Confidence 9999999999998776654433211100 0
Q ss_pred ---------------------------------------------HHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHhCC
Q 003891 130 ---------------------------------------------NNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNW 164 (788)
Q Consensus 130 ---------------------------------------------~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p 164 (788)
...+.++..+|.++..+|++++|+..|+++++.+|
T Consensus 283 ~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P 362 (615)
T TIGR00990 283 SNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDP 362 (615)
T ss_pred ccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 00112233344444445555555555555555555
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 003891 165 HYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVV 244 (788)
Q Consensus 165 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~ 244 (788)
+....+..+|.++...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+.+|+++++++|++...+..+|.+
T Consensus 363 ~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~ 442 (615)
T TIGR00990 363 RVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVT 442 (615)
T ss_pred CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHH
Confidence 55555555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 003891 245 YTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDS 302 (788)
Q Consensus 245 ~~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~ 302 (788)
+..+|++++|+..|+++++..|+++.++..+|.++..+|++++|++.|+++++++|++
T Consensus 443 ~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~ 500 (615)
T TIGR00990 443 QYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKET 500 (615)
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCcc
Confidence 5555555555555555555555555555555555555555555555555555555543
No 9
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.96 E-value=3.9e-26 Score=283.59 Aligned_cols=320 Identities=17% Similarity=0.175 Sum_probs=280.1
Q ss_pred HHHHHHHHHHcCCCChhhHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHH--------------HHHHHHHH
Q 003891 2 LVASYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAP--------------AYYNLGVV 67 (788)
Q Consensus 2 Ai~~~~kaL~~~P~~~~a~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~--------------~~~~lg~~ 67 (788)
|+..|+++++.+|++.++ +..+|.++...|++++|+.+|+++++.+|++.. ....+|.+
T Consensus 288 A~~~l~~aL~~~P~~~~a-------~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~ 360 (1157)
T PRK11447 288 AIPELQQAVRANPKDSEA-------LGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDA 360 (1157)
T ss_pred HHHHHHHHHHhCCCCHHH-------HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHH
Confidence 789999999999999877 677888889999999999999999999997642 22455888
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHH-----------
Q 003891 68 YSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIAL----------- 136 (788)
Q Consensus 68 ~~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l----------- 136 (788)
+...|++++|+..|+++++.+|++..++..+|.++...|++++|++.|+++++++|++..++..++.++
T Consensus 361 ~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A~~~ 440 (1157)
T PRK11447 361 ALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKALAF 440 (1157)
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999987776665543
Q ss_pred ------------------------HHhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Q 003891 137 ------------------------TDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYEL 192 (788)
Q Consensus 137 ------------------------~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 192 (788)
..++..+...|++++|++.|+++++.+|+++.+++.+|.+|...|++++|+..+++
T Consensus 441 l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~ 520 (1157)
T PRK11447 441 IASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMRR 520 (1157)
T ss_pred HHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 23566677899999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH----------------------------------------HhhCC
Q 003891 193 AFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMA----------------------------------------LSIKP 232 (788)
Q Consensus 193 al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~a----------------------------------------l~~~p 232 (788)
+++.+|+++..++.++..+...+++++|+..++++ ++..|
T Consensus 521 al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p 600 (1157)
T PRK11447 521 LAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQP 600 (1157)
T ss_pred HHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCC
Confidence 99999999998888888777777777777766542 22467
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhhHHhHHHH
Q 003891 233 NFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLA 312 (788)
Q Consensus 233 ~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~a~~~~lla 312 (788)
.++..+..+|.++.+.|++++|++.|+++++.+|+++.++..++.+|...|++++|++.++++++..|++..+... ++
T Consensus 601 ~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~--la 678 (1157)
T PRK11447 601 PSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRR--VA 678 (1157)
T ss_pred CCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHH--HH
Confidence 7888889999999999999999999999999999999999999999999999999999999999999988877554 45
Q ss_pred hhhccCCCchHHHHHHHH
Q 003891 313 MNYINEGHDDKLFEAHRD 330 (788)
Q Consensus 313 ~~~l~~g~~~~~~~~~~~ 330 (788)
..+...|+.+++.+..++
T Consensus 679 ~~~~~~g~~~eA~~~~~~ 696 (1157)
T PRK11447 679 LAWAALGDTAAAQRTFNR 696 (1157)
T ss_pred HHHHhCCCHHHHHHHHHH
Confidence 666778888777665543
No 10
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.95 E-value=2e-25 Score=260.14 Aligned_cols=289 Identities=12% Similarity=0.026 Sum_probs=266.5
Q ss_pred HHHHHHHHHHcCCCChhhHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 003891 2 LVASYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCY 81 (788)
Q Consensus 2 Ai~~~~kaL~~~P~~~~a~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 81 (788)
|++.|+++++.+|++..+ +..+|..+...|++++|+..|+++++.+|++..++..++.++...|++++|+..+
T Consensus 95 A~~~l~~~l~~~P~~~~a-------~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~ 167 (656)
T PRK15174 95 VLQVVNKLLAVNVCQPED-------VLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLA 167 (656)
T ss_pred HHHHHHHHHHhCCCChHH-------HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHH
Confidence 789999999999999887 6667788888999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHH
Q 003891 82 EKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALY 161 (788)
Q Consensus 82 ~kal~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~ 161 (788)
++++...|++...+..++ .+...|++++|+..++++++.+|...... ...++..+...|++++|+..++++++
T Consensus 168 ~~~~~~~P~~~~a~~~~~-~l~~~g~~~eA~~~~~~~l~~~~~~~~~~------~~~l~~~l~~~g~~~eA~~~~~~al~ 240 (656)
T PRK15174 168 RTQAQEVPPRGDMIATCL-SFLNKSRLPEDHDLARALLPFFALERQES------AGLAVDTLCAVGKYQEAIQTGESALA 240 (656)
T ss_pred HHHHHhCCCCHHHHHHHH-HHHHcCCHHHHHHHHHHHHhcCCCcchhH------HHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 999999999998887765 48899999999999999999876433211 12335556678899999999999999
Q ss_pred hCCCCHHHHHHHHHHHHHcCChHH----HHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH
Q 003891 162 YNWHYADAMYNLGVAYGEMLKFDM----AIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQS 237 (788)
Q Consensus 162 ~~p~~~~~~~~la~~~~~~g~~~~----A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~ 237 (788)
.+|++..++..+|.++...|++++ |+..|+++++.+|++..++..+|.++...|++++|+..++++++.+|+++.+
T Consensus 241 ~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a 320 (656)
T PRK15174 241 RGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYV 320 (656)
T ss_pred cCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHH
Confidence 999999999999999999999996 8999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChh
Q 003891 238 LNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRN 304 (788)
Q Consensus 238 ~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~ 304 (788)
+..+|.++...|++++|+..|++++..+|++...+..+|.++...|++++|++.|+++++.+|++..
T Consensus 321 ~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~~ 387 (656)
T PRK15174 321 RAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHLP 387 (656)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhch
Confidence 9999999999999999999999999999999888888899999999999999999999999999754
No 11
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.95 E-value=1.4e-24 Score=266.21 Aligned_cols=299 Identities=21% Similarity=0.222 Sum_probs=250.5
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC
Q 003891 28 TDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGD 107 (788)
Q Consensus 28 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g~ 107 (788)
..++..+...|++++|+..++++++..|.+...|..+|.++...|++++|+..|+++++.+|.++.++..+|.++...|+
T Consensus 571 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 650 (899)
T TIGR02917 571 LALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKN 650 (899)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCC
Confidence 44667777888888888888888888888888999999999999999999999999998889888889999999999999
Q ss_pred HHHHHHHHHHHHhhCCCcHHHHHHHHHHH---------------------------HHhhhhhhhcCCHHHHHHHHHHHH
Q 003891 108 LESAIACYERCLAVSPNFEIAKNNMAIAL---------------------------TDLGTKVKLEGDINQGVAYYKKAL 160 (788)
Q Consensus 108 ~~~A~~~~~~al~~~p~~~~~~~~la~~l---------------------------~~lg~~~~~~g~~~~A~~~~~~al 160 (788)
+++|+..|+++++..|++...+..++.++ ..+|.++...|++++|++.|++++
T Consensus 651 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~ 730 (899)
T TIGR02917 651 YAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKAL 730 (899)
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 99999999999998888776665554433 335566777888888888888888
Q ss_pred HhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHH
Q 003891 161 YYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNN 240 (788)
Q Consensus 161 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~ 240 (788)
...|+. ..+..++.++...|++++|++.++++++..|++..+++.+|.++...|++++|+.+|+++++.+|+++.++..
T Consensus 731 ~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 809 (899)
T TIGR02917 731 KRAPSS-QNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNN 809 (899)
T ss_pred hhCCCc-hHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 888777 6677788888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhhHHhHHHHhhhccCCC
Q 003891 241 LGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGH 320 (788)
Q Consensus 241 la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~a~~~~lla~~~l~~g~ 320 (788)
++.++...|+ .+|+.+++++++..|+++..+..+|.++...|++++|+++|+++++.+|+++.+..+ ++..+...|+
T Consensus 810 l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~--l~~~~~~~g~ 886 (899)
T TIGR02917 810 LAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYH--LALALLATGR 886 (899)
T ss_pred HHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHH--HHHHHHHcCC
Confidence 8888888888 788888888888888888888888888888899999999999998888887776665 4666777788
Q ss_pred chHHHHHHHH
Q 003891 321 DDKLFEAHRD 330 (788)
Q Consensus 321 ~~~~~~~~~~ 330 (788)
.+++.+..++
T Consensus 887 ~~~A~~~~~~ 896 (899)
T TIGR02917 887 KAEARKELDK 896 (899)
T ss_pred HHHHHHHHHH
Confidence 7777665543
No 12
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.95 E-value=2.4e-24 Score=267.62 Aligned_cols=323 Identities=20% Similarity=0.188 Sum_probs=277.2
Q ss_pred HHHHHHHHHHcCCCChhhH--HHH-----HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Q 003891 2 LVASYHKALSADPSYKPAA--ECL-----AIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQY 74 (788)
Q Consensus 2 Ai~~~~kaL~~~P~~~~a~--~~l-----a~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~ 74 (788)
|+..|+++++.+|++.... ..+ ...+..+|..+...|++++|+..|+++++.+|++..+++.+|.++...|++
T Consensus 322 A~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~ 401 (1157)
T PRK11447 322 AVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDY 401 (1157)
T ss_pred HHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCH
Confidence 7899999999999876431 111 123445688999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHH------------------------------------------HHHHCCCHHHHH
Q 003891 75 DTALGCYEKAALERPMYAEAYCNMGV------------------------------------------IYKNRGDLESAI 112 (788)
Q Consensus 75 ~~A~~~~~kal~~~p~~~~~~~~la~------------------------------------------~~~~~g~~~~A~ 112 (788)
++|++.|+++++.+|++..++..++. ++...|++++|+
T Consensus 402 ~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~ 481 (1157)
T PRK11447 402 AAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAA 481 (1157)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHH
Confidence 99999999999999998776655544 445679999999
Q ss_pred HHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Q 003891 113 ACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYEL 192 (788)
Q Consensus 113 ~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 192 (788)
+.|+++++++|++...+.. ++.++...|++++|+..++++++..|+++..++.++..+...+++++|+..+++
T Consensus 482 ~~~~~Al~~~P~~~~~~~~-------LA~~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~ 554 (1157)
T PRK11447 482 ELQRQRLALDPGSVWLTYR-------LAQDLRQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNT 554 (1157)
T ss_pred HHHHHHHHhCCCCHHHHHH-------HHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 9999999999998765544 455555677999999999999999999999888888887778888877776654
Q ss_pred H----------------------------------------HhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 003891 193 A----------------------------------------FHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKP 232 (788)
Q Consensus 193 a----------------------------------------l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p 232 (788)
+ ++..|.+...+..+|.++.+.|++++|+.+|+++++.+|
T Consensus 555 l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P 634 (1157)
T PRK11447 555 LPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREP 634 (1157)
T ss_pred CCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 2 224678888999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChh----hHHh
Q 003891 233 NFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRN----AGQN 308 (788)
Q Consensus 233 ~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~----a~~~ 308 (788)
+++.++..++.+|...|++++|++.++++++..|+++.++..+|.++..+|++++|++.|+++++..|+++. +...
T Consensus 635 ~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~ 714 (1157)
T PRK11447 635 GNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVL 714 (1157)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999998876653 2233
Q ss_pred HHHHhhhccCCCchHHHHHHHHH
Q 003891 309 RLLAMNYINEGHDDKLFEAHRDW 331 (788)
Q Consensus 309 ~lla~~~l~~g~~~~~~~~~~~~ 331 (788)
+.++..+...|+.+++.+.+++.
T Consensus 715 ~~~a~~~~~~G~~~~A~~~y~~A 737 (1157)
T PRK11447 715 RDAARFEAQTGQPQQALETYKDA 737 (1157)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHH
Confidence 34577778889998888877654
No 13
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.94 E-value=9.3e-26 Score=242.63 Aligned_cols=274 Identities=20% Similarity=0.310 Sum_probs=234.5
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 003891 24 AIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYK 103 (788)
Q Consensus 24 a~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~ 103 (788)
+.++.++|..|+..++|++|.++|+.+-+..|-..+..-....+++.+++--+--.+.+..++.+|+.++.|..+|+||.
T Consensus 353 ~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~Li~~~~~sPesWca~GNcfS 432 (638)
T KOG1126|consen 353 GWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQDLIDTDPNSPESWCALGNCFS 432 (638)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHHHHhhCCCCcHHHHHhcchhh
Confidence 34455555555555555555555555555555544444444444444444433333444445668889999999999999
Q ss_pred HCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCh
Q 003891 104 NRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKF 183 (788)
Q Consensus 104 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 183 (788)
-+++++.|+++|++|++++|.+. .+|..+|.-+....++++|..+|++++..+|.+..+|+.+|.+|.+++++
T Consensus 433 LQkdh~~Aik~f~RAiQldp~fa-------YayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqek~ 505 (638)
T KOG1126|consen 433 LQKDHDTAIKCFKRAIQLDPRFA-------YAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQEKL 505 (638)
T ss_pred hhhHHHHHHHHHHHhhccCCccc-------hhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhheeccchh
Confidence 99999999999999999999874 56667777778889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003891 184 DMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIA 263 (788)
Q Consensus 184 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~ 263 (788)
+.|+-.|++|++++|.+......+|.++.+.|+.++|+.+|++|+.++|.++-..+..|.++...+++++|+..+++..+
T Consensus 506 e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~ 585 (638)
T KOG1126|consen 506 EFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGRYVEALQELEELKE 585 (638)
T ss_pred hHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcchHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChh
Q 003891 264 ANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRN 304 (788)
Q Consensus 264 ~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~ 304 (788)
+-|+...+++.+|.+|.++|+.+.|+..|.-|+.++|.-.+
T Consensus 586 ~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~~ 626 (638)
T KOG1126|consen 586 LVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGAQ 626 (638)
T ss_pred hCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccch
Confidence 99999999999999999999999999999999999998655
No 14
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.94 E-value=2.7e-23 Score=254.72 Aligned_cols=317 Identities=23% Similarity=0.239 Sum_probs=172.1
Q ss_pred HHHHHHHHHHcCCCChhhHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 003891 2 LVASYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCY 81 (788)
Q Consensus 2 Ai~~~~kaL~~~P~~~~a~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 81 (788)
|++.+++.+...|++... +..+|.++...|++++|+..|+++++.+|++..+++.++.++...|++++|+..|
T Consensus 450 A~~~~~~~~~~~~~~~~~-------~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 522 (899)
T TIGR02917 450 ALAAAKKLEKKQPDNASL-------HNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRF 522 (899)
T ss_pred HHHHHHHHHHhCCCCcHH-------HHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 455556666655655444 3444445555555556666666555555555555555555555555555555555
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHH------------------------
Q 003891 82 EKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALT------------------------ 137 (788)
Q Consensus 82 ~kal~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~------------------------ 137 (788)
+++++..|.+..++..++.++...|++++|+..++++++.+|.+...+..++..+.
T Consensus 523 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 602 (899)
T TIGR02917 523 EKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPE 602 (899)
T ss_pred HHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHH
Confidence 55555555555555555555555555555555555555555554444444433332
Q ss_pred ---HhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Q 003891 138 ---DLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDR 214 (788)
Q Consensus 138 ---~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 214 (788)
.++.++...|++++|+..|+++++.+|.+..++..++.++...|++++|+..|+++++.+|++..++..++.++...
T Consensus 603 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 682 (899)
T TIGR02917 603 AWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAA 682 (899)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Confidence 23333334445555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 003891 215 DNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQ 294 (788)
Q Consensus 215 g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~ 294 (788)
|++++|+..++++.+..|.+...+..+|.++...|++++|++.|++++...|++ ..+..++.++...|++++|.+.+++
T Consensus 683 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~ 761 (899)
T TIGR02917 683 KRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSS-QNAIKLHRALLASGNTAEAVKTLEA 761 (899)
T ss_pred CCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCc-hHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 555555555555555555555555555555555555555555555555555544 4445555555555555555555555
Q ss_pred HHhhCCCChhhHHhHHHHhhhccCCCchHHHHHH
Q 003891 295 CLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAH 328 (788)
Q Consensus 295 al~l~p~~~~a~~~~lla~~~l~~g~~~~~~~~~ 328 (788)
+++.+|++..+... ++..|...|+.+++.+.+
T Consensus 762 ~l~~~~~~~~~~~~--la~~~~~~g~~~~A~~~~ 793 (899)
T TIGR02917 762 WLKTHPNDAVLRTA--LAELYLAQKDYDKAIKHY 793 (899)
T ss_pred HHHhCCCCHHHHHH--HHHHHHHCcCHHHHHHHH
Confidence 55555555444332 344444455555444433
No 15
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.93 E-value=5.9e-23 Score=227.39 Aligned_cols=302 Identities=18% Similarity=0.150 Sum_probs=257.0
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHH
Q 003891 26 VLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMY----AEAYCNMGVI 101 (788)
Q Consensus 26 ~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~----~~~~~~la~~ 101 (788)
..+.+|..+...|++++|+..|+++++.+|++..++..+|.++...|++++|+..+++++...+.. ..++..+|.+
T Consensus 37 ~~y~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~ 116 (389)
T PRK11788 37 RDYFKGLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQD 116 (389)
T ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHH
Confidence 356678888999999999999999999999999999999999999999999999999998854332 3578999999
Q ss_pred HHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHhCCCCH-----HHHHHHHHH
Q 003891 102 YKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYA-----DAMYNLGVA 176 (788)
Q Consensus 102 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~-----~~~~~la~~ 176 (788)
|...|++++|+..|+++++..|.+...+ ..++.++...|++++|++.++++++..|.+. ..+..+|.+
T Consensus 117 ~~~~g~~~~A~~~~~~~l~~~~~~~~~~-------~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~ 189 (389)
T PRK11788 117 YLKAGLLDRAEELFLQLVDEGDFAEGAL-------QQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQ 189 (389)
T ss_pred HHHCCCHHHHHHHHHHHHcCCcchHHHH-------HHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHH
Confidence 9999999999999999999888765444 4455556667899999999999999887653 256788999
Q ss_pred HHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHHcCCHHHHH
Q 003891 177 YGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNF-SQSLNNLGVVYTVQGKMDAAA 255 (788)
Q Consensus 177 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~eA~ 255 (788)
+...|++++|+..|+++++.+|+...++..+|.++...|++++|++.++++++.+|.+ ...+..++.+|...|++++|+
T Consensus 190 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~ 269 (389)
T PRK11788 190 ALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGL 269 (389)
T ss_pred HHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHH
Confidence 9999999999999999999999999999999999999999999999999999998876 457889999999999999999
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhhHHhHHHHhhhccCCCchHHHHHHHHHHHHH
Q 003891 256 EMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHRDWGKRF 335 (788)
Q Consensus 256 ~~l~kal~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~a~~~~lla~~~l~~g~~~~~~~~~~~~~~~~ 335 (788)
..++++++..|+... +..++.++.+.|++++|+..++++++..|++......+...+.....|...+++...+++.++.
T Consensus 270 ~~l~~~~~~~p~~~~-~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~ 348 (389)
T PRK11788 270 EFLRRALEEYPGADL-LLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQ 348 (389)
T ss_pred HHHHHHHHhCCCchH-HHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHH
Confidence 999999999998754 4899999999999999999999999999997755422212221222456667776666555443
No 16
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.93 E-value=2.1e-22 Score=239.67 Aligned_cols=322 Identities=15% Similarity=0.074 Sum_probs=220.8
Q ss_pred HHHHHHHHHHcCCCChhhHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 003891 2 LVASYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCY 81 (788)
Q Consensus 2 Ai~~~~kaL~~~P~~~~a~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 81 (788)
|++.|+++++.+|++..+ +..++.++...|++++|+..++++++..|++.. +..+|.++...|++++|+..+
T Consensus 68 A~~~~~~al~~~P~~~~a-------~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l 139 (765)
T PRK10049 68 SLTLWQKALSLEPQNDDY-------QRGLILTLADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAM 139 (765)
T ss_pred HHHHHHHHHHhCCCCHHH-------HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHH
Confidence 444555555555555444 223344444445555555555555555555555 555555555555555555555
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh-----------------------------------------
Q 003891 82 EKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLA----------------------------------------- 120 (788)
Q Consensus 82 ~kal~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~----------------------------------------- 120 (788)
+++++..|++..++..++.++...++.++|++.++++..
T Consensus 140 ~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~ 219 (765)
T PRK10049 140 TQALPRAPQTQQYPTEYVQALRNNRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQY 219 (765)
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHH
Confidence 555555555555555555555544444444433332221
Q ss_pred -----hCCCcHHHHHHHHHHHHH-hhhhhhhcCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHcCChHHHHHHHHHH
Q 003891 121 -----VSPNFEIAKNNMAIALTD-LGTKVKLEGDINQGVAYYKKALYYNWHYA-DAMYNLGVAYGEMLKFDMAIVFYELA 193 (788)
Q Consensus 121 -----~~p~~~~~~~~la~~l~~-lg~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~la~~~~~~g~~~~A~~~~~~a 193 (788)
..|.++........+... ++ .+...+++++|+..|+++++..+..+ .+...+|.+|...|++++|+..|+++
T Consensus 220 ~~ll~~~~~~p~~~~~~~~a~~d~l~-~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~ 298 (765)
T PRK10049 220 DALEALWHDNPDATADYQRARIDRLG-ALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTEL 298 (765)
T ss_pred HHHHhhcccCCccchHHHHHHHHHHH-HHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHH
Confidence 100000000000000001 12 23456889999999999998865432 34455799999999999999999999
Q ss_pred HhcCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC---------------CHHHHHHHHHHHHHcCCHHHH
Q 003891 194 FHFNPHC----AEACNNLGVIYKDRDNLDKAVECYQMALSIKPN---------------FSQSLNNLGVVYTVQGKMDAA 254 (788)
Q Consensus 194 l~~~p~~----~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~---------------~~~~~~~la~~~~~~g~~~eA 254 (788)
++.+|.+ ......++.++.+.|++++|+..++++.+..|. ...++..++.++...|++++|
T Consensus 299 l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA 378 (765)
T PRK10049 299 FYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQA 378 (765)
T ss_pred hhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHH
Confidence 9888765 456778888899999999999999999988762 235778899999999999999
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhhHHhHHHHhhhccCCCchHHHHHHHHHHHH
Q 003891 255 AEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHRDWGKR 334 (788)
Q Consensus 255 ~~~l~kal~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~a~~~~lla~~~l~~g~~~~~~~~~~~~~~~ 334 (788)
++.+++++...|++..++..+|.++...|++++|++.++++++++|++...... .++.++..++.+++....++..+.
T Consensus 379 ~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~--~a~~al~~~~~~~A~~~~~~ll~~ 456 (765)
T PRK10049 379 EMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVE--QAWTALDLQEWRQMDVLTDDVVAR 456 (765)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHH--HHHHHHHhCCHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999987665 556778888888887777666554
No 17
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.92 E-value=3.9e-22 Score=220.83 Aligned_cols=286 Identities=19% Similarity=0.144 Sum_probs=250.3
Q ss_pred HHHHHHHHHHcCCCChhhHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCHHHH
Q 003891 2 LVASYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHY----APAYYNLGVVYSELMQYDTA 77 (788)
Q Consensus 2 Ai~~~~kaL~~~P~~~~a~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~lg~~~~~~g~~~~A 77 (788)
|+..|+++++.+|++..+ +..+|..+...|++++|+..++++++..+.. ..++..+|.+|...|++++|
T Consensus 54 A~~~~~~al~~~p~~~~~-------~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A 126 (389)
T PRK11788 54 AIDLFIEMLKVDPETVEL-------HLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRA 126 (389)
T ss_pred HHHHHHHHHhcCcccHHH-------HHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 788999999999988665 6778888899999999999999998854332 35789999999999999999
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHHH
Q 003891 78 LGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYK 157 (788)
Q Consensus 78 ~~~~~kal~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~ 157 (788)
+..|+++++.+|.+..++..++.++...|++++|++.++++++..|..... ..+..+..++..+...|++++|+.+|+
T Consensus 127 ~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~~~~~~la~~~~~~~~~~~A~~~~~ 204 (389)
T PRK11788 127 EELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRV--EIAHFYCELAQQALARGDLDAARALLK 204 (389)
T ss_pred HHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchH--HHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 999999999999999999999999999999999999999999988765432 234456778888888999999999999
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH
Q 003891 158 KALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHC-AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQ 236 (788)
Q Consensus 158 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~ 236 (788)
++++.+|+...++..+|.++...|++++|++.++++++.+|.+ ..++..++.+|...|++++|+..++++++..|+...
T Consensus 205 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~ 284 (389)
T PRK11788 205 KALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGADL 284 (389)
T ss_pred HHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchH
Confidence 9999999999999999999999999999999999999998876 467889999999999999999999999999998754
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH--cCCHHHHHHHHHHHHh
Q 003891 237 SLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRD--AGSISLAIDAYEQCLK 297 (788)
Q Consensus 237 ~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~--~g~~~eA~~~~~~al~ 297 (788)
. ..++.++...|++++|+..++++++..|++......++..+.. .|+..+|+..+++.++
T Consensus 285 ~-~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~ 346 (389)
T PRK11788 285 L-LALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVG 346 (389)
T ss_pred H-HHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHH
Confidence 4 8999999999999999999999999999987665455444432 4588888888777664
No 18
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=2.4e-22 Score=207.88 Aligned_cols=282 Identities=20% Similarity=0.239 Sum_probs=254.4
Q ss_pred HHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 003891 20 AECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMG 99 (788)
Q Consensus 20 ~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~la 99 (788)
....|..+-..|+-++.+|+|++||++|.++|++.|+.+..|.+++-||...|++++.++...++++++|++..+++..+
T Consensus 111 ~~k~A~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA 190 (606)
T KOG0547|consen 111 RLKYAAALKTKGNKFFRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRA 190 (606)
T ss_pred HHHHHHHHHhhhhhhhhcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHH
Confidence 34567788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHCCCHHHHHHHH------------------HHHHhh--------------CCCcHH--------------------
Q 003891 100 VIYKNRGDLESAIACY------------------ERCLAV--------------SPNFEI-------------------- 127 (788)
Q Consensus 100 ~~~~~~g~~~~A~~~~------------------~~al~~--------------~p~~~~-------------------- 127 (788)
..+..+|++++|+.-. ++.++. .|..+.
T Consensus 191 ~A~E~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~ 270 (606)
T KOG0547|consen 191 SAHEQLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFD 270 (606)
T ss_pred HHHHhhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhcccccccccc
Confidence 9999999999886532 222211 000000
Q ss_pred --------------------------------------------------HHHHHHHHHHHhhhhhhhcCCHHHHHHHHH
Q 003891 128 --------------------------------------------------AKNNMAIALTDLGTKVKLEGDINQGVAYYK 157 (788)
Q Consensus 128 --------------------------------------------------~~~~la~~l~~lg~~~~~~g~~~~A~~~~~ 157 (788)
-...++.++...|..+.-.|+...|...++
T Consensus 271 ~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~ 350 (606)
T KOG0547|consen 271 NKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFD 350 (606)
T ss_pred CCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHH
Confidence 011234455556677778899999999999
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH
Q 003891 158 KALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQS 237 (788)
Q Consensus 158 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~ 237 (788)
++++++|.....|..++.+|....+.++..+.|.++..++|+++.+|+..|.+++-++++++|+.-|++++.++|++...
T Consensus 351 ~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~ 430 (606)
T KOG0547|consen 351 AAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAYA 430 (606)
T ss_pred HHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 003891 238 LNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPD 301 (788)
Q Consensus 238 ~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~ 301 (788)
+..++.+.+++++++++...|+.+.+..|+.++.+...|.++..++++++|++.|.+|+++.|.
T Consensus 431 ~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~ 494 (606)
T KOG0547|consen 431 YIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPR 494 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccc
Confidence 9999999999999999999999999999999999999999999999999999999999999998
No 19
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.91 E-value=6.6e-22 Score=235.42 Aligned_cols=283 Identities=13% Similarity=0.044 Sum_probs=251.1
Q ss_pred HHHHHHHHHcCCC--ChhhHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 003891 3 VASYHKALSADPS--YKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGC 80 (788)
Q Consensus 3 i~~~~kaL~~~P~--~~~a~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~ 80 (788)
...+.+++...|. +..+ ++.+|.++.. ++..+|+..|.+++...|++. ....+|..+...|++++|+..
T Consensus 461 ~~~~~~al~~~p~~~~~~a-------~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~-~~L~lA~al~~~Gr~eeAi~~ 531 (987)
T PRK09782 461 CPAIVRLLGDMSPSYDAAA-------WNRLAKCYRD-TLPGVALYAWLQAEQRQPDAW-QHRAVAYQAYQVEDYATALAA 531 (987)
T ss_pred HHHHHHhcccCCCCCCHHH-------HHHHHHHHHh-CCcHHHHHHHHHHHHhCCchH-HHHHHHHHHHHCCCHHHHHHH
Confidence 3455666666676 6666 6666766666 899999999999999999754 466778888899999999999
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHH
Q 003891 81 YEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKAL 160 (788)
Q Consensus 81 ~~kal~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al 160 (788)
|+++....|. ...+..+|.++...|++++|+.+|+++++..|........ ++......|++++|+..|++++
T Consensus 532 ~rka~~~~p~-~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~-------La~~l~~~Gr~~eAl~~~~~AL 603 (987)
T PRK09782 532 WQKISLHDMS-NEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWW-------LHAQRYIPGQPELALNDLTRSL 603 (987)
T ss_pred HHHHhccCCC-cHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHH-------HHHHHHhCCCHHHHHHHHHHHH
Confidence 9998777555 4567899999999999999999999999999887543332 3333344689999999999999
Q ss_pred HhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHH
Q 003891 161 YYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNN 240 (788)
Q Consensus 161 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~ 240 (788)
+.+|+ ..++.++|.++.+.|++++|+..|++++..+|++..++.++|.++...|++++|+..|+++++.+|+++.++.+
T Consensus 604 ~l~P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~n 682 (987)
T PRK09782 604 NIAPS-ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQ 682 (987)
T ss_pred HhCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 99996 89999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCh
Q 003891 241 LGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSR 303 (788)
Q Consensus 241 la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~ 303 (788)
+|.++...|++++|+..|++++++.|++..+....|.+.....+++.|.+.++++..++|+..
T Consensus 683 LA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~~~~~ 745 (987)
T PRK09782 683 LAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLHEEVGRRWTFSFDSS 745 (987)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcCccch
Confidence 999999999999999999999999999999999999999999999999999999999999876
No 20
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.91 E-value=3.9e-22 Score=206.33 Aligned_cols=313 Identities=19% Similarity=0.226 Sum_probs=267.0
Q ss_pred HHHHHHHHHHcCCCChhhHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 003891 2 LVASYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCY 81 (788)
Q Consensus 2 Ai~~~~kaL~~~P~~~~a~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 81 (788)
||++|.+||++.|+.+.. |.+++-+|...|+|++.++...++++++|+...+++..+..+..+|++++|+.-.
T Consensus 134 AIkyY~~AI~l~p~epiF-------YsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A~E~lg~~~eal~D~ 206 (606)
T KOG0547|consen 134 AIKYYTQAIELCPDEPIF-------YSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRASAHEQLGKFDEALFDV 206 (606)
T ss_pred HHHHHHHHHhcCCCCchh-------hhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHhhccHHHHHHhh
Confidence 899999999999998655 6667777788899999999999999999999999999999999999998887643
Q ss_pred HH------------------HHHh--------------CC----------------------------------------
Q 003891 82 EK------------------AALE--------------RP---------------------------------------- 89 (788)
Q Consensus 82 ~k------------------al~~--------------~p---------------------------------------- 89 (788)
.- .++. .|
T Consensus 207 tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~ksDa~l~~~l~~ 286 (606)
T KOG0547|consen 207 TVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKSDKSDAALAEALEA 286 (606)
T ss_pred hHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCCccchhhHHHHHHH
Confidence 31 1110 00
Q ss_pred ----------------------------CC---------HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHH
Q 003891 90 ----------------------------MY---------AEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNM 132 (788)
Q Consensus 90 ----------------------------~~---------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 132 (788)
.+ +.++...|..++-.|++..|...|+++|.++|.+...
T Consensus 287 l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~~l---- 362 (606)
T KOG0547|consen 287 LEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAFNSL---- 362 (606)
T ss_pred HHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcCcccchH----
Confidence 00 2455666777788899999999999999999987644
Q ss_pred HHHHHHhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 003891 133 AIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYK 212 (788)
Q Consensus 133 a~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 212 (788)
|..++.+|...++.++-...|.++..++|+++++|+..|++++-++++++|+.-|++++.++|++...+..++.+.+
T Consensus 363 ---yI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Y 439 (606)
T KOG0547|consen 363 ---YIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAYAYIQLCCALY 439 (606)
T ss_pred ---HHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHH
Confidence 55666667778899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHH-HcCCH
Q 003891 213 DRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPT------YAEAYNNLGVLYR-DAGSI 285 (788)
Q Consensus 213 ~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~------~~~~~~~la~~~~-~~g~~ 285 (788)
++++++++...|+.+.+..|+.++.+...|.++..++++++|++.|.+++.+.|. ++..+...|.+.. -.+++
T Consensus 440 r~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk~d~ 519 (606)
T KOG0547|consen 440 RQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQWKEDI 519 (606)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhchhhhH
Confidence 9999999999999999999999999999999999999999999999999999998 5544444444332 34899
Q ss_pred HHHHHHHHHHHhhCCCChhhHHhHHHHhhhccCCCchHHHHHHHH
Q 003891 286 SLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHRD 330 (788)
Q Consensus 286 ~eA~~~~~~al~l~p~~~~a~~~~lla~~~l~~g~~~~~~~~~~~ 330 (788)
.+|+..++++++++|....+... ++..-+..|+.+++++..++
T Consensus 520 ~~a~~Ll~KA~e~Dpkce~A~~t--laq~~lQ~~~i~eAielFEk 562 (606)
T KOG0547|consen 520 NQAENLLRKAIELDPKCEQAYET--LAQFELQRGKIDEAIELFEK 562 (606)
T ss_pred HHHHHHHHHHHccCchHHHHHHH--HHHHHHHHhhHHHHHHHHHH
Confidence 99999999999999999888766 45556667777776665443
No 21
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.91 E-value=1.6e-22 Score=217.78 Aligned_cols=295 Identities=21% Similarity=0.228 Sum_probs=260.8
Q ss_pred HHHHHHHHHHHHHHHc--CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 003891 22 CLAIVLTDLGTSLKLA--GNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMG 99 (788)
Q Consensus 22 ~la~~l~~lg~~~~~~--g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~la 99 (788)
.+-.++..+|..+... -+..+|+..|.+.-+..++...++.++|..|+++++|++|..+|+.+-+..|...+..-.+.
T Consensus 315 ~l~~llr~~~~~~~~~s~y~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyS 394 (638)
T KOG1126|consen 315 ELMELLRGLGEGYRSLSQYNCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYS 394 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHH
Confidence 3444566666665544 45689999999977777888899999999999999999999999999999998777777777
Q ss_pred HHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 003891 100 VIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGE 179 (788)
Q Consensus 100 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 179 (788)
.+++...+--+--.+.+..++.+|+.++.|.. +|++|.-+++.+.|+++|+++++++|....+|..+|.-+..
T Consensus 395 T~LWHLq~~v~Ls~Laq~Li~~~~~sPesWca-------~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~ 467 (638)
T KOG1126|consen 395 TTLWHLQDEVALSYLAQDLIDTDPNSPESWCA-------LGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIA 467 (638)
T ss_pred HHHHHHHhhHHHHHHHHHHHhhCCCCcHHHHH-------hcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhh
Confidence 77887777666566677888999999877654 55666668899999999999999999999999999999999
Q ss_pred cCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 003891 180 MLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIE 259 (788)
Q Consensus 180 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~ 259 (788)
..++|+|..+|++++..+|.+..+|+.+|.+|.++++++.|.-+|++|++++|.+......+|.++.+.|+.++|+.+|+
T Consensus 468 ~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~ 547 (638)
T KOG1126|consen 468 TEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYE 547 (638)
T ss_pred hHHHHhHHHHHHhhhcCCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhhHHhHHHHhhhccCCCchHHH
Q 003891 260 KAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLF 325 (788)
Q Consensus 260 kal~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~a~~~~lla~~~l~~g~~~~~~ 325 (788)
+|+.++|.++-..+..|.++..++++++|+..+++.-++.|++..++. +++..|-..|....++
T Consensus 548 ~A~~ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~--llgki~k~~~~~~~Al 611 (638)
T KOG1126|consen 548 KAIHLDPKNPLCKYHRASILFSLGRYVEALQELEELKELVPQESSVFA--LLGKIYKRLGNTDLAL 611 (638)
T ss_pred HHHhcCCCCchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHH--HHHHHHHHHccchHHH
Confidence 999999999999999999999999999999999999999999777654 5677776666655443
No 22
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=5.4e-21 Score=196.90 Aligned_cols=298 Identities=24% Similarity=0.261 Sum_probs=252.0
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHH-----------------------------HHHHcCCHHH
Q 003891 26 VLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGV-----------------------------VYSELMQYDT 76 (788)
Q Consensus 26 ~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~-----------------------------~~~~~g~~~~ 76 (788)
.++..|.++.+.|....|+..|.+++...|-+-.+|..|+. ++....+.++
T Consensus 166 llYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~~~l~~~l~~~~h~M~~~F~~~a~~el~q~~e 245 (559)
T KOG1155|consen 166 LLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEILSILVVGLPSDMHWMKKFFLKKAYQELHQHEE 245 (559)
T ss_pred HHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHHHHHHhcCcccchHHHHHHHHHHHHHHHHHHH
Confidence 47778999999999999999999999988887776655543 4444556677
Q ss_pred HHHHHHHHHHh-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHH------------------
Q 003891 77 ALGCYEKAALE-RPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALT------------------ 137 (788)
Q Consensus 77 A~~~~~kal~~-~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~------------------ 137 (788)
++.-++..... .|.+...-...|.+...+.++++|+..|+...+.+|-..+.....+.+++
T Consensus 246 ~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v~~i 325 (559)
T KOG1155|consen 246 ALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVSNI 325 (559)
T ss_pred HHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHHHHHh
Confidence 77777777776 78888888899999999999999999999999998864333222222221
Q ss_pred ---------HhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHH
Q 003891 138 ---------DLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLG 208 (788)
Q Consensus 138 ---------~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 208 (788)
-+|+.|...++.++|+.+|+++++++|....+|..+|.-|.++++...|++.|++|++++|.+..+|+.+|
T Consensus 326 dKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLG 405 (559)
T KOG1155|consen 326 DKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLG 405 (559)
T ss_pred ccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhh
Confidence 24677888899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Q 003891 209 VIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLA 288 (788)
Q Consensus 209 ~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~~eA 288 (788)
..|.-++...=|+-+|++|++..|++...|..||.||.+.++.++|+++|++++.....+..++..||++|.++++.++|
T Consensus 406 QaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eA 485 (559)
T KOG1155|consen 406 QAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEA 485 (559)
T ss_pred HHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhC-----CCChhhHHhHHHHhhhccCCCchH
Q 003891 289 IDAYEQCLKID-----PDSRNAGQNRLLAMNYINEGHDDK 323 (788)
Q Consensus 289 ~~~~~~al~l~-----p~~~~a~~~~lla~~~l~~g~~~~ 323 (788)
..+|++.++.. -++........++..+...++.++
T Consensus 486 a~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~ 525 (559)
T KOG1155|consen 486 AQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDE 525 (559)
T ss_pred HHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHH
Confidence 99999999843 222222223345555555555444
No 23
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.90 E-value=1e-20 Score=225.30 Aligned_cols=320 Identities=13% Similarity=0.075 Sum_probs=263.7
Q ss_pred HHHHHHHHHHcCCCChhhHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 003891 2 LVASYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCY 81 (788)
Q Consensus 2 Ai~~~~kaL~~~P~~~~a~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 81 (788)
|++.|+++...+|....+ +..+|..+...|++++|+..|+++++.+|.++.++..++.++...|++++|+..+
T Consensus 34 A~~~~~~~~~~~~~~a~~-------~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~l 106 (765)
T PRK10049 34 VITVYNRYRVHMQLPARG-------YAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVKA 106 (765)
T ss_pred HHHHHHHHHhhCCCCHHH-------HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 678888888878887666 6677788888999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhhh------------------
Q 003891 82 EKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKV------------------ 143 (788)
Q Consensus 82 ~kal~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~~~------------------ 143 (788)
+++++..|++.. +..+|.++...|++++|+..+++++++.|++...+..++.++...+...
T Consensus 107 ~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~ 185 (765)
T PRK10049 107 KQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAIDDANLTPAEKRD 185 (765)
T ss_pred HHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHHHHH
Confidence 999999999999 9999999999999999999999999999999988887777664322110
Q ss_pred ------------------hhcCCH---HHHHHHHHHHHHhCCCCHH-------HHHHHHHHHHHcCChHHHHHHHHHHHh
Q 003891 144 ------------------KLEGDI---NQGVAYYKKALYYNWHYAD-------AMYNLGVAYGEMLKFDMAIVFYELAFH 195 (788)
Q Consensus 144 ------------------~~~g~~---~~A~~~~~~al~~~p~~~~-------~~~~la~~~~~~g~~~~A~~~~~~al~ 195 (788)
...+++ ++|++.++++++..|.++. +.......+...|++++|+..|+++++
T Consensus 186 l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~ 265 (765)
T PRK10049 186 LEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKA 265 (765)
T ss_pred HHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhc
Confidence 011223 6788888888876444332 222212344677999999999999998
Q ss_pred cCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---
Q 003891 196 FNPHC-AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNF----SQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPT--- 267 (788)
Q Consensus 196 ~~p~~-~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~--- 267 (788)
..+.. ..+...+|.+|..+|++++|+.+|+++++.+|.+ ......++.++...|++++|+..++++....|.
T Consensus 266 ~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~ 345 (765)
T PRK10049 266 EGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLR 345 (765)
T ss_pred cCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEe
Confidence 86432 2344446999999999999999999999988765 456778888899999999999999999998763
Q ss_pred ------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhhHHhHHHHhhhccCCCchHHHHHHHHH
Q 003891 268 ------------YAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHRDW 331 (788)
Q Consensus 268 ------------~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~a~~~~lla~~~l~~g~~~~~~~~~~~~ 331 (788)
...++..++.++...|++++|++.+++++...|++..++.. ++..+...|+.+++.+..++.
T Consensus 346 ~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~--lA~l~~~~g~~~~A~~~l~~a 419 (765)
T PRK10049 346 LYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRID--YASVLQARGWPRAAENELKKA 419 (765)
T ss_pred ecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH--HHHHHHhcCCHHHHHHHHHHH
Confidence 24577889999999999999999999999999999877655 667777888888777665543
No 24
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=2.8e-21 Score=198.96 Aligned_cols=267 Identities=19% Similarity=0.223 Sum_probs=231.0
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC
Q 003891 28 TDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGD 107 (788)
Q Consensus 28 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g~ 107 (788)
...|.+.+.+.++++|+..|++..+.+|-..+-.-...++++-.++-.+-.-+.+.+.+++.-.++....+|+.|...++
T Consensus 266 ~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~e 345 (559)
T KOG1155|consen 266 TQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVSNIDKYRPETCCIIANYYSLRSE 345 (559)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHHHHHhccCCccceeeehhHHHHHHh
Confidence 34556667777888888888888888877666666666666666665555555566667777777888888999999999
Q ss_pred HHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHH
Q 003891 108 LESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAI 187 (788)
Q Consensus 108 ~~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 187 (788)
.++|+.+|+++++++|+...+|.. +|.-|..+++...|++.|++|++++|.+-.+|+.+|++|.-++...-|+
T Consensus 346 HEKAv~YFkRALkLNp~~~~aWTL-------mGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaL 418 (559)
T KOG1155|consen 346 HEKAVMYFKRALKLNPKYLSAWTL-------MGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYAL 418 (559)
T ss_pred HHHHHHHHHHHHhcCcchhHHHHH-------hhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHH
Confidence 999999999999999998765544 5555666779999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---
Q 003891 188 VFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAA--- 264 (788)
Q Consensus 188 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~--- 264 (788)
-+|+++++..|.+...|..+|.||.+.++.++|+++|.+++.....+..++..+|.+|.+.++.++|..+|++.++.
T Consensus 419 yYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~ 498 (559)
T KOG1155|consen 419 YYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSEL 498 (559)
T ss_pred HHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999983
Q ss_pred ----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 003891 265 ----NPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPD 301 (788)
Q Consensus 265 ----~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~ 301 (788)
.|+...+...|+..+.+.+++++|..+..+++.-++.
T Consensus 499 eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~~~e 539 (559)
T KOG1155|consen 499 EGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKGETE 539 (559)
T ss_pred hcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcCCch
Confidence 4555677788999999999999999998888776443
No 25
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.90 E-value=8.4e-21 Score=226.05 Aligned_cols=254 Identities=16% Similarity=0.105 Sum_probs=228.0
Q ss_pred HHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Q 003891 43 GIQKYYEALKIDPH--YAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLA 120 (788)
Q Consensus 43 A~~~~~~al~~~p~--~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 120 (788)
+...+.+++...|. ++.+|+++|.++.. +++.+|+..+.+++...|+.. ....+|.++...|++++|+..|++++.
T Consensus 460 ~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~-~~L~lA~al~~~Gr~eeAi~~~rka~~ 537 (987)
T PRK09782 460 NCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDAW-QHRAVAYQAYQVEDYATALAAWQKISL 537 (987)
T ss_pred hHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCchH-HHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 44555556666777 99999999999987 899999999999999999754 466678888899999999999999988
Q ss_pred hCCCcHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC
Q 003891 121 VSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHC 200 (788)
Q Consensus 121 ~~p~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 200 (788)
..|... .+ ..+|.++...|++++|+.+|+++++.+|.....+..++......|++++|+..|+++++.+|+
T Consensus 538 ~~p~~~-a~-------~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~- 608 (987)
T PRK09782 538 HDMSNE-DL-------LAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNIAPS- 608 (987)
T ss_pred cCCCcH-HH-------HHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC-
Confidence 766643 22 344556666889999999999999999999888888887778889999999999999999997
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 003891 201 AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYR 280 (788)
Q Consensus 201 ~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~ 280 (788)
..++.++|.++.+.|++++|+..|+++++.+|+++.++.++|.++...|++++|++.|+++++.+|+++.+++++|.++.
T Consensus 609 ~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~ 688 (987)
T PRK09782 609 ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQ 688 (987)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHhhCCCChhhHH
Q 003891 281 DAGSISLAIDAYEQCLKIDPDSRNAGQ 307 (788)
Q Consensus 281 ~~g~~~eA~~~~~~al~l~p~~~~a~~ 307 (788)
.+|++++|+.+|+++++++|++.....
T Consensus 689 ~lGd~~eA~~~l~~Al~l~P~~a~i~~ 715 (987)
T PRK09782 689 RLDDMAATQHYARLVIDDIDNQALITP 715 (987)
T ss_pred HCCCHHHHHHHHHHHHhcCCCCchhhh
Confidence 999999999999999999998766543
No 26
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.89 E-value=2.1e-20 Score=208.12 Aligned_cols=327 Identities=21% Similarity=0.247 Sum_probs=250.1
Q ss_pred HHHHHHHHHHcCCCChhhHHHHH------------------------------HHHHHHHHHHHHcCChHHHHHHHHHHH
Q 003891 2 LVASYHKALSADPSYKPAAECLA------------------------------IVLTDLGTSLKLAGNTQDGIQKYYEAL 51 (788)
Q Consensus 2 Ai~~~~kaL~~~P~~~~a~~~la------------------------------~~l~~lg~~~~~~g~~~~A~~~~~~al 51 (788)
++..++++...+|.++.+...++ ..++.+|.++..+|+|++|..+|.+++
T Consensus 255 ~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~ 334 (1018)
T KOG2002|consen 255 GVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESL 334 (1018)
T ss_pred HHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHH
Confidence 45566666667776666554443 336778999999999999999999999
Q ss_pred HhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHhhCCCcH
Q 003891 52 KIDPHY-APAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRG----DLESAIACYERCLAVSPNFE 126 (788)
Q Consensus 52 ~~~p~~-~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g----~~~~A~~~~~~al~~~p~~~ 126 (788)
+.++++ .-.++.+|.+|+..|+++.|+.+|+++++..|++.+....||.+|...+ ..++|..+..++++..|.+.
T Consensus 335 k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~ 414 (1018)
T KOG2002|consen 335 KADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDS 414 (1018)
T ss_pred ccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccH
Confidence 999888 7788999999999999999999999999999999999999999998886 67889999999999999888
Q ss_pred HHHHHHHHHH-------------------------------HHhhhhhhhcCCHHHHHHHHHHHHHh-----CCCC----
Q 003891 127 IAKNNMAIAL-------------------------------TDLGTKVKLEGDINQGVAYYKKALYY-----NWHY---- 166 (788)
Q Consensus 127 ~~~~~la~~l-------------------------------~~lg~~~~~~g~~~~A~~~~~~al~~-----~p~~---- 166 (788)
.+|..++.++ .++|..++..|++.+|...|.+++.. +++.
T Consensus 415 ~a~l~laql~e~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~ 494 (1018)
T KOG2002|consen 415 EAWLELAQLLEQTDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKST 494 (1018)
T ss_pred HHHHHHHHHHHhcChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccc
Confidence 8887776553 34566777888999999999988876 1211
Q ss_pred -HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 003891 167 -ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVY 245 (788)
Q Consensus 167 -~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~ 245 (788)
....+++|.++...++++.|.+.|...++.+|....++..+|.+....++..+|...++.+++.+..++.++..+|.++
T Consensus 495 ~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~ 574 (1018)
T KOG2002|consen 495 NLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLH 574 (1018)
T ss_pred hhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHH
Confidence 2247889999999999999999999999999999999999988888888899999999999998888888888888777
Q ss_pred HHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHH------------cCCHHHHHHHHHHHHhhCCCChhhHHhHHH
Q 003891 246 TVQGKMDAAAEMIEKAIAANP--TYAEAYNNLGVLYRD------------AGSISLAIDAYEQCLKIDPDSRNAGQNRLL 311 (788)
Q Consensus 246 ~~~g~~~eA~~~l~kal~~~p--~~~~~~~~la~~~~~------------~g~~~eA~~~~~~al~l~p~~~~a~~~~ll 311 (788)
....++..|.+-|+..++.-. .++.+...||.++.+ .+.+++|++.|.++++.+|.|.-+....
T Consensus 575 l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGI-- 652 (1018)
T KOG2002|consen 575 LKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPKNMYAANGI-- 652 (1018)
T ss_pred HhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcchhhhccch--
Confidence 777766666665555554321 334555566665543 3456777777777777777776665553
Q ss_pred HhhhccCCCchHHHHHHHH
Q 003891 312 AMNYINEGHDDKLFEAHRD 330 (788)
Q Consensus 312 a~~~l~~g~~~~~~~~~~~ 330 (788)
+..+...|...++.....+
T Consensus 653 giVLA~kg~~~~A~dIFsq 671 (1018)
T KOG2002|consen 653 GIVLAEKGRFSEARDIFSQ 671 (1018)
T ss_pred hhhhhhccCchHHHHHHHH
Confidence 3333444555554444433
No 27
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=1e-19 Score=192.22 Aligned_cols=277 Identities=22% Similarity=0.274 Sum_probs=252.5
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 003891 25 IVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKN 104 (788)
Q Consensus 25 ~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~ 104 (788)
.++...+..++..+++.+..++.+..++.+|-+..++-..--++.++|+..+-...-.+.++..|+.+..|+..|..|..
T Consensus 245 dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~YYl~ 324 (611)
T KOG1173|consen 245 DLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGCYYLM 324 (611)
T ss_pred HHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcchhhHHHHHHH
Confidence 44667788899999999999999999999999888775555599999999998888899999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChH
Q 003891 105 RGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFD 184 (788)
Q Consensus 105 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 184 (788)
.|++.+|..+|.|+..++|....+|...+.++.. .+..++|+.+|..|-++-|........+|.-|...++++
T Consensus 325 i~k~seARry~SKat~lD~~fgpaWl~fghsfa~-------e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~k 397 (611)
T KOG1173|consen 325 IGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAG-------EGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLK 397 (611)
T ss_pred hcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhh-------cchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHH
Confidence 9999999999999999999998877766655554 669999999999999999998888889999999999999
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-------CCHHHHHHHHHHHHHcCCHHHHHHH
Q 003891 185 MAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKP-------NFSQSLNNLGVVYTVQGKMDAAAEM 257 (788)
Q Consensus 185 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p-------~~~~~~~~la~~~~~~g~~~eA~~~ 257 (788)
-|.++|.+++.+.|.++-.+..+|.+.+..+.|.+|..+|++++..-+ .....+.+||.++.+++.+++|+.+
T Consensus 398 LAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~ 477 (611)
T KOG1173|consen 398 LAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDY 477 (611)
T ss_pred HHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHH
Confidence 999999999999999999999999999999999999999999994421 2344689999999999999999999
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhhHHh
Q 003891 258 IEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQN 308 (788)
Q Consensus 258 l~kal~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~a~~~ 308 (788)
+++++.+.|.++.++..+|.+|..+|+++.|+++|.+++.++|++..+..-
T Consensus 478 ~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~l 528 (611)
T KOG1173|consen 478 YQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISEL 528 (611)
T ss_pred HHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHH
Confidence 999999999999999999999999999999999999999999998766543
No 28
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.86 E-value=7.5e-19 Score=195.94 Aligned_cols=297 Identities=22% Similarity=0.246 Sum_probs=189.3
Q ss_pred CHHHHHHHHHHcCCCChhhHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 003891 1 MLVASYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGC 80 (788)
Q Consensus 1 ~Ai~~~~kaL~~~P~~~~a~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~ 80 (788)
+|+..|+++++++|.+..+...++.+-.. ......+..+...+.++...++.++.++..|+..++..|+|..+..+
T Consensus 217 ~a~~a~~ralqLdp~~v~alv~L~~~~l~----~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~l 292 (1018)
T KOG2002|consen 217 KALLAFERALQLDPTCVSALVALGEVDLN----FNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHL 292 (1018)
T ss_pred hHHHHHHHHHhcChhhHHHHHHHHHHHHH----ccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHH
Confidence 47888999999999888875555544221 22234456677777777777777777777777777777777777777
Q ss_pred HHHHHHhCC---CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCc-HHHHHHHHHHHHHhhhhhhhcCCHHHHHHHH
Q 003891 81 YEKAALERP---MYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNF-EIAKNNMAIALTDLGTKVKLEGDINQGVAYY 156 (788)
Q Consensus 81 ~~kal~~~p---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~ 156 (788)
...++.... ..++.++.+|.+|..+|+|++|..+|.++++.++++ ...+..+++.+.. .|+++.|+.+|
T Consensus 293 a~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~-------~~dle~s~~~f 365 (1018)
T KOG2002|consen 293 AEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIK-------RGDLEESKFCF 365 (1018)
T ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHH-------hchHHHHHHHH
Confidence 766665432 234456777777777777777777777777766665 4455555665555 34667777777
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHcC----ChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--
Q 003891 157 KKALYYNWHYADAMYNLGVAYGEML----KFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSI-- 230 (788)
Q Consensus 157 ~~al~~~p~~~~~~~~la~~~~~~g----~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~-- 230 (788)
++.++..|++.+....+|.+|...+ ..++|..+..++++..|.+.++|..++.++....-+.. +.+|.+|+..
T Consensus 366 Ekv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~d~~~s-L~~~~~A~d~L~ 444 (1018)
T KOG2002|consen 366 EKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQTDPWAS-LDAYGNALDILE 444 (1018)
T ss_pred HHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhcChHHH-HHHHHHHHHHHH
Confidence 7777777777776666666666654 45666666666666666666666666666654433333 6666666533
Q ss_pred ---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 003891 231 ---KPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAA-----NPTY-----AEAYNNLGVLYRDAGSISLAIDAYEQCLK 297 (788)
Q Consensus 231 ---~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~-----~p~~-----~~~~~~la~~~~~~g~~~eA~~~~~~al~ 297 (788)
.+--++.++++|..++..|++++|...+.+++.. +++. ....+++|.++..+++++.|.+.|...++
T Consensus 445 ~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilk 524 (1018)
T KOG2002|consen 445 SKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILK 524 (1018)
T ss_pred HcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 2333556666666666666666666666666654 1111 23456666666666666666666666666
Q ss_pred hCCCChhhHHhH
Q 003891 298 IDPDSRNAGQNR 309 (788)
Q Consensus 298 l~p~~~~a~~~~ 309 (788)
..|...+++..+
T Consensus 525 ehp~YId~ylRl 536 (1018)
T KOG2002|consen 525 EHPGYIDAYLRL 536 (1018)
T ss_pred HCchhHHHHHHh
Confidence 666666665543
No 29
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.86 E-value=1.9e-21 Score=204.78 Aligned_cols=261 Identities=21% Similarity=0.201 Sum_probs=122.5
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC
Q 003891 29 DLGTSLKLAGNTQDGIQKYYEALKI--DPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRG 106 (788)
Q Consensus 29 ~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g 106 (788)
.+|..++..|++++|++.+++.+.. .|++...|..+|.+....+++++|+..|++++..++.++..+..++.+ ...+
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~~ 91 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQDG 91 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccc
Confidence 5588888999999999999776554 488999999999999999999999999999999999988899899888 7999
Q ss_pred CHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCChH
Q 003891 107 DLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYN--WHYADAMYNLGVAYGEMLKFD 184 (788)
Q Consensus 107 ~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~ 184 (788)
++++|+++++++.+..++ +..+ .....++...++++++...++++.... +.++..+..+|.++.+.|+.+
T Consensus 92 ~~~~A~~~~~~~~~~~~~-~~~l-------~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~ 163 (280)
T PF13429_consen 92 DPEEALKLAEKAYERDGD-PRYL-------LSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPD 163 (280)
T ss_dssp ----------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHH
T ss_pred cccccccccccccccccc-cchh-------hHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHH
Confidence 999999999999876644 2222 233344556789999999999987655 677889999999999999999
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 003891 185 MAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAA 264 (788)
Q Consensus 185 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~ 264 (788)
+|+..|+++++.+|++..+...++.++...|+++++...++...+..|.++..+..+|.++...|++++|+.+|+++++.
T Consensus 164 ~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~ 243 (280)
T PF13429_consen 164 KALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKL 243 (280)
T ss_dssp HHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccccccc
Confidence 99999999999999999999999999999999999999999988888888899999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 003891 265 NPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKI 298 (788)
Q Consensus 265 ~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l 298 (788)
+|+++..+..+|.++...|+.++|..+++++++.
T Consensus 244 ~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~~ 277 (280)
T PF13429_consen 244 NPDDPLWLLAYADALEQAGRKDEALRLRRQALRL 277 (280)
T ss_dssp STT-HHHHHHHHHHHT------------------
T ss_pred cccccccccccccccccccccccccccccccccc
Confidence 9999999999999999999999999999998763
No 30
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.86 E-value=5.5e-19 Score=175.39 Aligned_cols=283 Identities=17% Similarity=0.227 Sum_probs=225.7
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC
Q 003891 27 LTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRG 106 (788)
Q Consensus 27 l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g 106 (788)
.+.+|..++..|++..|+..|..+++.+|++..+++..|.+|..+|+-.-|+.-+.+++++.|+..-+....|.+++++|
T Consensus 41 hlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~G 120 (504)
T KOG0624|consen 41 HLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQG 120 (504)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhhcc
Confidence 67889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhhCCCcHHH---HHHHHH-----HHHHhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 003891 107 DLESAIACYERCLAVSPNFEIA---KNNMAI-----ALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYG 178 (788)
Q Consensus 107 ~~~~A~~~~~~al~~~p~~~~~---~~~la~-----~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 178 (788)
++++|..-|.+.++.+|++... ...++. .+......+...|+...|+++....+++.|-+...+...+.+|.
T Consensus 121 ele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc~i 200 (504)
T KOG0624|consen 121 ELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQARAKCYI 200 (504)
T ss_pred cHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHHHHHHH
Confidence 9999999999999999965422 222221 12223333445677777777777777777777777777777777
Q ss_pred HcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH---------------------
Q 003891 179 EMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQS--------------------- 237 (788)
Q Consensus 179 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~--------------------- 237 (788)
..|+...|+.-++.+-++..++.+.++.++.+++..|+.+.++...+++++++|++...
T Consensus 201 ~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~~YKklkKv~K~les~e~~i 280 (504)
T KOG0624|consen 201 AEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCFPFYKKLKKVVKSLESAEQAI 280 (504)
T ss_pred hcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777777777777777777777777777777777777777776655321
Q ss_pred -----------------------------HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Q 003891 238 -----------------------------LNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLA 288 (788)
Q Consensus 238 -----------------------------~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~~eA 288 (788)
...+..|+...+++.+|+..+.+++..+|++.+++...+.+|.....|+.|
T Consensus 281 e~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~A 360 (504)
T KOG0624|consen 281 EEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDA 360 (504)
T ss_pred hhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHH
Confidence 122334455567778888888888888888888888888888888888888
Q ss_pred HHHHHHHHhhCCCChhhHHhH
Q 003891 289 IDAYEQCLKIDPDSRNAGQNR 309 (788)
Q Consensus 289 ~~~~~~al~l~p~~~~a~~~~ 309 (788)
+..|+++.+.++++..+...+
T Consensus 361 I~dye~A~e~n~sn~~~reGl 381 (504)
T KOG0624|consen 361 IHDYEKALELNESNTRAREGL 381 (504)
T ss_pred HHHHHHHHhcCcccHHHHHHH
Confidence 888888888888887776554
No 31
>PRK12370 invasion protein regulator; Provisional
Probab=99.85 E-value=8.6e-19 Score=201.36 Aligned_cols=217 Identities=17% Similarity=0.096 Sum_probs=168.2
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC---------CCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhhh
Q 003891 73 QYDTALGCYEKAALERPMYAEAYCNMGVIYKNR---------GDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKV 143 (788)
Q Consensus 73 ~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~---------g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~~~ 143 (788)
++++|+.+|+++++++|+++.++..+|.+|... +++++|+..++++++++|++..++..++.++..
T Consensus 276 ~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~----- 350 (553)
T PRK12370 276 SLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTI----- 350 (553)
T ss_pred HHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-----
Confidence 467888888888888888888888887776533 347788888888888888888877777776665
Q ss_pred hhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 003891 144 KLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVEC 223 (788)
Q Consensus 144 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~ 223 (788)
.|++++|+..|+++++++|+++.+++.+|.++...|++++|+..++++++++|.+...+..++.+++..|++++|+..
T Consensus 351 --~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g~~eeA~~~ 428 (553)
T PRK12370 351 --HSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWITYYHTGIDDAIRL 428 (553)
T ss_pred --ccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhccCHHHHHHH
Confidence 347888888888888888888888888888888888888888888888888888777666666667777888888888
Q ss_pred HHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 003891 224 YQMALSIK-PNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKI 298 (788)
Q Consensus 224 ~~~al~~~-p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l 298 (788)
++++++.. |+++..+..+|.++..+|++++|...+++.....|....+...++..|...|+ +|...+++.++.
T Consensus 429 ~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~a~~~l~~ll~~ 502 (553)
T PRK12370 429 GDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNSE--RALPTIREFLES 502 (553)
T ss_pred HHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccHH--HHHHHHHHHHHH
Confidence 88887764 67777788888888888888888888888877777777777788888777774 666666665543
No 32
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.84 E-value=1.5e-18 Score=183.16 Aligned_cols=305 Identities=20% Similarity=0.295 Sum_probs=226.9
Q ss_pred HHHHHHHHHHcCCCChhhHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 003891 2 LVASYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCY 81 (788)
Q Consensus 2 Ai~~~~kaL~~~P~~~~a~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 81 (788)
|+..|.+++.++|.+.-. |.+..-+|...|+|++|++--.+.++++|..+..|..+|..+.-+|+|++|+..|
T Consensus 21 ai~~~t~ai~l~p~nhvl-------ySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~~eA~~ay 93 (539)
T KOG0548|consen 21 AIRLFTEAIMLSPTNHVL-------YSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDYEEAILAY 93 (539)
T ss_pred HHHHHHHHHccCCCccch-------hcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccHHHHHHHH
Confidence 678889999999987665 5566666777788888988888888889998889999999999999999999999
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHCC---------------------CHHHHHHHHHHHHh---h----------------
Q 003891 82 EKAALERPMYAEAYCNMGVIYKNRG---------------------DLESAIACYERCLA---V---------------- 121 (788)
Q Consensus 82 ~kal~~~p~~~~~~~~la~~~~~~g---------------------~~~~A~~~~~~al~---~---------------- 121 (788)
.+.++.+|++...+..++.++.... ++......|.+.++ .
T Consensus 94 ~~GL~~d~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l~d~r~m~ 173 (539)
T KOG0548|consen 94 SEGLEKDPSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYLNDPRLMK 173 (539)
T ss_pred HHHhhcCCchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcccccHHHHH
Confidence 8888888887776666666552210 00000001111110 0
Q ss_pred -------------------------CCC-----------cHH---HHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHh
Q 003891 122 -------------------------SPN-----------FEI---AKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYY 162 (788)
Q Consensus 122 -------------------------~p~-----------~~~---~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~ 162 (788)
.|. +.. -....+.-...+|+......++..|++.|.+++++
T Consensus 174 a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~el 253 (539)
T KOG0548|consen 174 ADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQHYAKALEL 253 (539)
T ss_pred HHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHhH
Confidence 000 000 01123555555666666666666666666666555
Q ss_pred CCCC----------------------------------------HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-----
Q 003891 163 NWHY----------------------------------------ADAMYNLGVAYGEMLKFDMAIVFYELAFHFN----- 197 (788)
Q Consensus 163 ~p~~----------------------------------------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~----- 197 (788)
+.+. ..+...+|..|...++++.|+.+|++++...
T Consensus 254 ~~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ 333 (539)
T KOG0548|consen 254 ATDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGAIKYYQKALTEHRTPDL 333 (539)
T ss_pred hhhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHHH
Confidence 3321 1123346678888899999999999988642
Q ss_pred ---------------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 003891 198 ---------------------PHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAE 256 (788)
Q Consensus 198 ---------------------p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~ 256 (788)
|.-..--..-|..++..|+|.+|+..|.+++..+|+++..|.+.|.||.++|++..|+.
T Consensus 334 ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~ 413 (539)
T KOG0548|consen 334 LSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALK 413 (539)
T ss_pred HHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHH
Confidence 22233344568999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhhHHhHHHHh
Q 003891 257 MIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAM 313 (788)
Q Consensus 257 ~l~kal~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~a~~~~lla~ 313 (788)
..+++++++|+....|+..|.++..+.+|++|.+.|+++++.+|++.++...+.-+.
T Consensus 414 Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~e~~~~~~rc~ 470 (539)
T KOG0548|consen 414 DAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSNAEAIDGYRRCV 470 (539)
T ss_pred HHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999988776644433
No 33
>PRK12370 invasion protein regulator; Provisional
Probab=99.84 E-value=7.6e-19 Score=201.80 Aligned_cols=252 Identities=14% Similarity=0.075 Sum_probs=195.5
Q ss_pred HHHHHHHHHHcCCCChhhHHHHHHHHHHHHHH--HHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 003891 2 LVASYHKALSADPSYKPAAECLAIVLTDLGTS--LKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALG 79 (788)
Q Consensus 2 Ai~~~~kaL~~~P~~~~a~~~la~~l~~lg~~--~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~ 79 (788)
|++.|+++++.+|++..++..++.++..++.. ....+++++|+..++++++++|+++.++..+|.++...|++++|+.
T Consensus 280 A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~ 359 (553)
T PRK12370 280 ALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVGSL 359 (553)
T ss_pred HHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHH
Confidence 78999999999999999988888877766542 2245678999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHH
Q 003891 80 CYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKA 159 (788)
Q Consensus 80 ~~~kal~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~a 159 (788)
.|+++++++|+++.+++.+|.++...|++++|+..++++++++|.+......++. .+...|++++|+..++++
T Consensus 360 ~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~-------~~~~~g~~eeA~~~~~~~ 432 (553)
T PRK12370 360 LFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLW-------ITYYHTGIDDAIRLGDEL 432 (553)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHH-------HHHhccCHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999998654333222 233356788888888888
Q ss_pred HHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHH
Q 003891 160 LYYN-WHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSL 238 (788)
Q Consensus 160 l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~ 238 (788)
++.. |+++..+..+|.++...|++++|...+++.....|....+...++..|...|+ +|...+++.++.........
T Consensus 433 l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~a~~~l~~ll~~~~~~~~~~ 510 (553)
T PRK12370 433 RSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNSE--RALPTIREFLESEQRIDNNP 510 (553)
T ss_pred HHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccHH--HHHHHHHHHHHHhhHhhcCc
Confidence 7764 66777777888888888888888888887777777777777777777777663 66666666554433222222
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Q 003891 239 NNLGVVYTVQGKMDAAAEMIEKAIA 263 (788)
Q Consensus 239 ~~la~~~~~~g~~~eA~~~l~kal~ 263 (788)
..+..+|.-.|+-+.+..+ +++.+
T Consensus 511 ~~~~~~~~~~g~~~~~~~~-~~~~~ 534 (553)
T PRK12370 511 GLLPLVLVAHGEAIAEKMW-NKFKN 534 (553)
T ss_pred hHHHHHHHHHhhhHHHHHH-HHhhc
Confidence 2355555566666655555 44443
No 34
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.84 E-value=2.1e-19 Score=190.88 Aligned_cols=240 Identities=20% Similarity=0.255 Sum_probs=185.4
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC
Q 003891 28 TDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGD 107 (788)
Q Consensus 28 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g~ 107 (788)
+..|..+++.|+..+|.-+|+.+++.+|.++++|..||.+....++-..|+..++++++++|++.+++..||..|...|.
T Consensus 289 f~eG~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~ 368 (579)
T KOG1125|consen 289 FKEGCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGL 368 (579)
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhh
Confidence 55788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCChHH
Q 003891 108 LESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNW--HYADAMYNLGVAYGEMLKFDM 185 (788)
Q Consensus 108 ~~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~~g~~~~ 185 (788)
-.+|++++.+-+...|........--.-.............+..-.++|-.+....| .++++...||.+|...|+|++
T Consensus 369 q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdr 448 (579)
T KOG1125|consen 369 QNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDR 448 (579)
T ss_pred HHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHH
Confidence 999999999999988775321100000000000000111223444556666666666 567777777777777777777
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 003891 186 AIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAAN 265 (788)
Q Consensus 186 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~ 265 (788)
|+++|+.+|...|++...|+.||..+....+.++|+..|++|+++.|....+.++||..+..+|.|++|.++|-.++.+.
T Consensus 449 aiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq 528 (579)
T KOG1125|consen 449 AVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQ 528 (579)
T ss_pred HHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhh
Confidence 77777777777777777777777777777777777777777777777777777777777777777777777777777765
Q ss_pred CC
Q 003891 266 PT 267 (788)
Q Consensus 266 p~ 267 (788)
+.
T Consensus 529 ~k 530 (579)
T KOG1125|consen 529 RK 530 (579)
T ss_pred hc
Confidence 43
No 35
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.83 E-value=1.4e-17 Score=177.75 Aligned_cols=308 Identities=16% Similarity=0.081 Sum_probs=270.7
Q ss_pred HHHHHHHHHHcCCCChhhHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 003891 2 LVASYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCY 81 (788)
Q Consensus 2 Ai~~~~kaL~~~P~~~~a~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 81 (788)
|...|..+|+..|..... |...+..-...|..++-..++++++...|.....|...+..+...|+...|...+
T Consensus 535 arAVya~alqvfp~k~sl-------Wlra~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake~w~agdv~~ar~il 607 (913)
T KOG0495|consen 535 ARAVYAHALQVFPCKKSL-------WLRAAMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKEKWKAGDVPAARVIL 607 (913)
T ss_pred HHHHHHHHHhhccchhHH-------HHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhcCCcHHHHHHH
Confidence 567889999999988776 4445555566789999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHH
Q 003891 82 EKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALY 161 (788)
Q Consensus 82 ~kal~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~ 161 (788)
.++++.+|++.++|+..-.+.....+++.|..+|.++....|... +++.-......+++.++|+.+++++++
T Consensus 608 ~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~sgTeR--------v~mKs~~~er~ld~~eeA~rllEe~lk 679 (913)
T KOG0495|consen 608 DQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSISGTER--------VWMKSANLERYLDNVEEALRLLEEALK 679 (913)
T ss_pred HHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcch--------hhHHHhHHHHHhhhHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999998877633 333333444446799999999999999
Q ss_pred hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 003891 162 YNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNL 241 (788)
Q Consensus 162 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l 241 (788)
..|+....|..+|+++..+++.+.|.+.|...++..|.....|..++.+-.+.|+...|...++++.-.+|.+...|...
T Consensus 680 ~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~ 759 (913)
T KOG0495|consen 680 SFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLES 759 (913)
T ss_pred hCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCC------------------------------HHHHHHHHHHHHHcCCHHHHHHH
Q 003891 242 GVVYTVQGKMDAAAEMIEKAIAANPTY------------------------------AEAYNNLGVLYRDAGSISLAIDA 291 (788)
Q Consensus 242 a~~~~~~g~~~eA~~~l~kal~~~p~~------------------------------~~~~~~la~~~~~~g~~~eA~~~ 291 (788)
..+-.+.|+.++|.....+|++..|++ +.++...|.++....++++|.++
T Consensus 760 Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~e~k~~kar~W 839 (913)
T KOG0495|consen 760 IRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREW 839 (913)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999876654 45667789999999999999999
Q ss_pred HHHHHhhCCCChhhHHhHHHHhhhccCCCchHHHH
Q 003891 292 YEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFE 326 (788)
Q Consensus 292 ~~~al~l~p~~~~a~~~~lla~~~l~~g~~~~~~~ 326 (788)
|.++++.+|++-++|..+ ...++..|..++-.+
T Consensus 840 f~Ravk~d~d~GD~wa~f--ykfel~hG~eed~ke 872 (913)
T KOG0495|consen 840 FERAVKKDPDNGDAWAWF--YKFELRHGTEEDQKE 872 (913)
T ss_pred HHHHHccCCccchHHHHH--HHHHHHhCCHHHHHH
Confidence 999999999999998763 445566676554333
No 36
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.83 E-value=7.7e-19 Score=173.34 Aligned_cols=289 Identities=18% Similarity=0.179 Sum_probs=250.1
Q ss_pred HcCCCChhhHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC---CC-------CHHHHHHHHHHHHHcCCHHHHHHH
Q 003891 11 SADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKID---PH-------YAPAYYNLGVVYSELMQYDTALGC 80 (788)
Q Consensus 11 ~~~P~~~~a~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~---p~-------~~~~~~~lg~~~~~~g~~~~A~~~ 80 (788)
+++|..-.....+...++.. +++..++...|-......++.+ |. +......+|.||+.+|-+.+|.+.
T Consensus 168 RLN~tkYa~~p~l~kaLFey--~fyhenDv~~aH~~~~~~~~~~~a~~s~~~~~~~dwwWk~Q~gkCylrLgm~r~Aekq 245 (478)
T KOG1129|consen 168 RLNPTKYAERPTLVKALFEY--LFYHENDVQKAHSLCQAVLEVERAKPSGSTGCTLDWWWKQQMGKCYLRLGMPRRAEKQ 245 (478)
T ss_pred hcCchhhccChHHHHHHHHH--HHHhhhhHHHHHHHHHHHHHHHhccccccccchHhHHHHHHHHHHHHHhcChhhhHHH
Confidence 44555444444556666654 5666788888887777766552 11 122336789999999999999999
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHH
Q 003891 81 YEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKAL 160 (788)
Q Consensus 81 ~~kal~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al 160 (788)
++.+++..|. ++.+..|+.+|....+...|+..+.+.++..|.+...... ++.++...+++++|.++|+.++
T Consensus 246 lqssL~q~~~-~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g-------~ARi~eam~~~~~a~~lYk~vl 317 (478)
T KOG1129|consen 246 LQSSLTQFPH-PDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLG-------QARIHEAMEQQEDALQLYKLVL 317 (478)
T ss_pred HHHHhhcCCc-hhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhh-------hHHHHHHHHhHHHHHHHHHHHH
Confidence 9999998765 8899999999999999999999999999999998754444 4555555679999999999999
Q ss_pred HhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC---CCHHH
Q 003891 161 YYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKP---NFSQS 237 (788)
Q Consensus 161 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p---~~~~~ 237 (788)
+.+|.+.++...+|.-|+..++.+-|+.+|++.++..-.+++.+.++|.|.+..++++-++..|++++.... .-.++
T Consensus 318 k~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDv 397 (478)
T KOG1129|consen 318 KLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADV 397 (478)
T ss_pred hcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhh
Confidence 999999999999999999999999999999999999999999999999999999999999999999998743 33679
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhhHHhH
Q 003891 238 LNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNR 309 (788)
Q Consensus 238 ~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~a~~~~ 309 (788)
|+++|.+....|++.-|..+|+-++..++++.+++.+||.+-.+.|+.++|..+++.+-...|+-.+...|+
T Consensus 398 WYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~m~E~~~Nl 469 (478)
T KOG1129|consen 398 WYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVMPDMAEVTTNL 469 (478)
T ss_pred hhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCccccccccce
Confidence 999999999999999999999999999999999999999999999999999999999999999988777664
No 37
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.83 E-value=1.8e-18 Score=182.98 Aligned_cols=263 Identities=20% Similarity=0.322 Sum_probs=233.4
Q ss_pred HHHHHHHHHHcCCCChhhHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 003891 2 LVASYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCY 81 (788)
Q Consensus 2 Ai~~~~kaL~~~P~~~~a~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 81 (788)
..++.+..++.+|-+.+.. -..+| ++...|+..+-..+-.+.++..|+.+-.|+..|..|+..|++.+|..+|
T Consensus 263 c~kit~~lle~dpfh~~~~------~~~ia-~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~YYl~i~k~seARry~ 335 (611)
T KOG1173|consen 263 CLKITEELLEKDPFHLPCL------PLHIA-CLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGCYYLMIGKYSEARRYF 335 (611)
T ss_pred HHHHhHHHHhhCCCCcchH------HHHHH-HHHHhcccchHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCcHHHHHHH
Confidence 4577888999999888763 23444 6777788888888888899999999999999999999999999999999
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHH
Q 003891 82 EKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALY 161 (788)
Q Consensus 82 ~kal~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~ 161 (788)
.|+..++|....+|...|..+...|..++|+.+|..|-++.|....... .+|.-|...++++-|.++|.+++.
T Consensus 336 SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~L-------Ylgmey~~t~n~kLAe~Ff~~A~a 408 (611)
T KOG1173|consen 336 SKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSL-------YLGMEYMRTNNLKLAEKFFKQALA 408 (611)
T ss_pred HHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHH-------HHHHHHHHhccHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999998654433 345556667899999999999999
Q ss_pred hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC-------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 003891 162 YNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNP-------HCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNF 234 (788)
Q Consensus 162 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-------~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~ 234 (788)
+.|.++-++..+|.+.+..+.|.+|..+|+.++..-+ .....+.++|.++.+++++++|+.+|++++.+.|.+
T Consensus 409 i~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~ 488 (611)
T KOG1173|consen 409 IAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKD 488 (611)
T ss_pred cCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCc
Confidence 9999999999999999999999999999999994321 235578999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 003891 235 SQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVL 278 (788)
Q Consensus 235 ~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~ 278 (788)
..++..+|.+|..+|+++.|+++|.+++.+.|++..+-..|+.+
T Consensus 489 ~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~a 532 (611)
T KOG1173|consen 489 ASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLA 532 (611)
T ss_pred hhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHH
Confidence 99999999999999999999999999999999987665555533
No 38
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.83 E-value=1.1e-17 Score=185.64 Aligned_cols=286 Identities=16% Similarity=0.193 Sum_probs=190.4
Q ss_pred HHHHHHHHHHcCCCChhhHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 003891 2 LVASYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCY 81 (788)
Q Consensus 2 Ai~~~~kaL~~~P~~~~a~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 81 (788)
|+..+.++++++|.+..+ |+.+|.+|.++|+.+++...+-.|-.++|++.+.|..++....++|++++|.-+|
T Consensus 158 A~~i~~EvIkqdp~~~~a-------y~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy 230 (895)
T KOG2076|consen 158 AEEILMEVIKQDPRNPIA-------YYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYCY 230 (895)
T ss_pred HHHHHHHHHHhCccchhh-------HHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHH
Confidence 678889999999998888 7777888888899999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHH
Q 003891 82 EKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALY 161 (788)
Q Consensus 82 ~kal~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~ 161 (788)
.+|++.+|.+....+..+.+|.+.|+...|...|.++++..|... +...-..-...+..+...++-+.|++.++.++.
T Consensus 231 ~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d--~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s 308 (895)
T KOG2076|consen 231 SRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVD--IERIEDLIRRVAHYFITHNERERAAKALEGALS 308 (895)
T ss_pred HHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchh--HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999988322 111111222234444555566888888888877
Q ss_pred hCC--CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc-------------------------------------------
Q 003891 162 YNW--HYADAMYNLGVAYGEMLKFDMAIVFYELAFHF------------------------------------------- 196 (788)
Q Consensus 162 ~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~------------------------------------------- 196 (788)
... ...+.+..++.++....+++.|..........
T Consensus 309 ~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~ 388 (895)
T KOG2076|consen 309 KEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLV 388 (895)
T ss_pred hccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhh
Confidence 322 22334566677777777777776665544330
Q ss_pred ------------------C--C-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHH
Q 003891 197 ------------------N--P-HCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPN-FSQSLNNLGVVYTVQGKMDAA 254 (788)
Q Consensus 197 ------------------~--p-~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~eA 254 (788)
+ + +....+..++..|...|++.+|+.+|..+....+. +..+|+.+|.||..+|.+++|
T Consensus 389 ~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A 468 (895)
T KOG2076|consen 389 HLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEA 468 (895)
T ss_pred cccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHH
Confidence 0 1 12334444455555555555555555554443321 233455555555555555555
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003891 255 AEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCL 296 (788)
Q Consensus 255 ~~~l~kal~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al 296 (788)
+++|++++...|++.++...|+.++.++|+.++|.+.+++..
T Consensus 469 ~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~ 510 (895)
T KOG2076|consen 469 IEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQII 510 (895)
T ss_pred HHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhccc
Confidence 555555555555555555555555555555555555544443
No 39
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.83 E-value=1.7e-17 Score=183.92 Aligned_cols=294 Identities=14% Similarity=-0.005 Sum_probs=174.2
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHC
Q 003891 27 LTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYA-EAYCNMGVIYKNR 105 (788)
Q Consensus 27 l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~-~~~~~la~~~~~~ 105 (788)
....|......|+++.|.+.+.++.+..|+....+...|.++..+|++++|.++++++.+..|+.. .+....+.++...
T Consensus 87 ~~~~glla~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~ 166 (409)
T TIGR00540 87 QTEEALLKLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQ 166 (409)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHC
Confidence 445566666667777777777776666666666666666777777777777777777766666653 3444456667777
Q ss_pred CCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHh---CCCCH-HHHHHHHHHHHHcC
Q 003891 106 GDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYY---NWHYA-DAMYNLGVAYGEML 181 (788)
Q Consensus 106 g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~---~p~~~-~~~~~la~~~~~~g 181 (788)
|++++|...+++.++..|+++.+...++.++.. .|++++|.+.+.+..+. ++... ........-+...+
T Consensus 167 ~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~-------~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~ 239 (409)
T TIGR00540 167 NELHAARHGVDKLLEMAPRHKEVLKLAEEAYIR-------SGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEA 239 (409)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-------HhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 777777777777777777766655544444433 44667666666666654 22222 11112222223333
Q ss_pred ChHHHHHHHHHHHhcCC----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHH--HHHHHHHHHcCCHHHHH
Q 003891 182 KFDMAIVFYELAFHFNP----HCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSL--NNLGVVYTVQGKMDAAA 255 (788)
Q Consensus 182 ~~~~A~~~~~~al~~~p----~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~--~~la~~~~~~g~~~eA~ 255 (788)
..+++.+.+.++.+..| +++..+..++..+...|++++|.+.++++++..|++.... ..........++.++++
T Consensus 240 ~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~ 319 (409)
T TIGR00540 240 MADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLE 319 (409)
T ss_pred HHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHH
Confidence 44444555555555555 3566666666777777777777777777777666665421 11222223345666667
Q ss_pred HHHHHHHHhCCCCH--HHHHHHHHHHHHcCCHHHHHHHHH--HHHhhCCCChhhHHhHHHHhhhccCCCchHHHHHHHH
Q 003891 256 EMIEKAIAANPTYA--EAYNNLGVLYRDAGSISLAIDAYE--QCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHRD 330 (788)
Q Consensus 256 ~~l~kal~~~p~~~--~~~~~la~~~~~~g~~~eA~~~~~--~al~l~p~~~~a~~~~lla~~~l~~g~~~~~~~~~~~ 330 (788)
+.++++++..|+++ .....+|.++.++|++++|.++|+ ++++..|++.... .++..+...|+.+++.+.+++
T Consensus 320 ~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~---~La~ll~~~g~~~~A~~~~~~ 395 (409)
T TIGR00540 320 KLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLA---MAADAFDQAGDKAEAAAMRQD 395 (409)
T ss_pred HHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHH---HHHHHHHHcCCHHHHHHHHHH
Confidence 77777777777766 666667777777777777777777 4555666554422 345555666666665554443
No 40
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.82 E-value=6.5e-18 Score=171.68 Aligned_cols=286 Identities=16% Similarity=0.187 Sum_probs=253.3
Q ss_pred HHHHcCCCChhhHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 003891 8 KALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALE 87 (788)
Q Consensus 8 kaL~~~P~~~~a~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~ 87 (788)
.-....|+|... +..+|.+++..|++++|+..|+++...+|.+....-..|..+...|++++-..+-...+..
T Consensus 223 e~~~~lr~NvhL-------l~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~ 295 (564)
T KOG1174|consen 223 HDNTTLRCNEHL-------MMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAK 295 (564)
T ss_pred HhhccCCccHHH-------HHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhh
Confidence 334445555554 6778888889999999999999999999999999999999999999999988888888888
Q ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHhCCCCH
Q 003891 88 RPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYA 167 (788)
Q Consensus 88 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~ 167 (788)
......-|+--+...+..+++..|+.+-+++|+.+|.+..++...+.++.+ .++.++|+-.|+.+..+.|-..
T Consensus 296 ~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~-------~~R~~~A~IaFR~Aq~Lap~rL 368 (564)
T KOG1174|consen 296 VKYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIA-------LERHTQAVIAFRTAQMLAPYRL 368 (564)
T ss_pred hhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHh-------ccchHHHHHHHHHHHhcchhhH
Confidence 878888899999999999999999999999999999998766655555555 5699999999999999999999
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHH-HHH-HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 003891 168 DAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLG-VIY-KDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVY 245 (788)
Q Consensus 168 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la-~~~-~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~ 245 (788)
+.|..+-.+|...|++.+|...-+.+++..|.++.++..+| .++ ..-.--++|.+++++++.++|....+...++.++
T Consensus 369 ~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~ 448 (564)
T KOG1174|consen 369 EIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELC 448 (564)
T ss_pred HHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999987 333 3344568999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhhHHh
Q 003891 246 TVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQN 308 (788)
Q Consensus 246 ~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~a~~~ 308 (788)
...|.++.++..+++.+...|+ ...+..||.++...+.+++|.++|..|+.++|++..+...
T Consensus 449 ~~Eg~~~D~i~LLe~~L~~~~D-~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~sl~G 510 (564)
T KOG1174|consen 449 QVEGPTKDIIKLLEKHLIIFPD-VNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRTLRG 510 (564)
T ss_pred HhhCccchHHHHHHHHHhhccc-cHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHHHHH
Confidence 9999999999999999999887 5678999999999999999999999999999998877554
No 41
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.82 E-value=7e-18 Score=178.07 Aligned_cols=288 Identities=25% Similarity=0.307 Sum_probs=222.2
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC
Q 003891 26 VLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNR 105 (788)
Q Consensus 26 ~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~ 105 (788)
-+...|+..+..|+|+.|+.+|.+++.++|.|...|.+...+|..+|+|++|++--.+.++++|..+..|..+|..+...
T Consensus 4 e~k~kgnaa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~l 83 (539)
T KOG0548|consen 4 ELKEKGNAAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGL 83 (539)
T ss_pred HHHHHHHhhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhc
Confidence 35677889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhh---------hhhh-cC----CHHHHHHHHHHHHHh---------
Q 003891 106 GDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGT---------KVKL-EG----DINQGVAYYKKALYY--------- 162 (788)
Q Consensus 106 g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~---------~~~~-~g----~~~~A~~~~~~al~~--------- 162 (788)
|+|++|+..|.+.++.+|++......++.++..... .+.. .+ ++-..-..|.+.++.
T Consensus 84 g~~~eA~~ay~~GL~~d~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~ 163 (539)
T KOG0548|consen 84 GDYEEAILAYSEGLEKDPSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLK 163 (539)
T ss_pred ccHHHHHHHHHHHhhcCCchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhh
Confidence 999999999999999999999888777766622100 0000 00 000000111111110
Q ss_pred -----------------------------------CCC---------------------CHHHHHHHHHHHHHcCChHHH
Q 003891 163 -----------------------------------NWH---------------------YADAMYNLGVAYGEMLKFDMA 186 (788)
Q Consensus 163 -----------------------------------~p~---------------------~~~~~~~la~~~~~~g~~~~A 186 (788)
.|. .......+|+..+...+++.|
T Consensus 164 ~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a 243 (539)
T KOG0548|consen 164 LYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETA 243 (539)
T ss_pred cccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHH
Confidence 110 011256789999999999999
Q ss_pred HHHHHHHHhcCCCCHHHHHH-----------------------------------------HHHHHHHcCCHHHHHHHHH
Q 003891 187 IVFYELAFHFNPHCAEACNN-----------------------------------------LGVIYKDRDNLDKAVECYQ 225 (788)
Q Consensus 187 ~~~~~~al~~~p~~~~~~~~-----------------------------------------la~~~~~~g~~~eA~~~~~ 225 (788)
++.|..+++++ .+...+.+ +|..|.+.++++.|+.+|+
T Consensus 244 ~q~y~~a~el~-~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~ 322 (539)
T KOG0548|consen 244 IQHYAKALELA-TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGAIKYYQ 322 (539)
T ss_pred HHHHHHHHhHh-hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHH
Confidence 99999999886 43333222 4445666677788888888
Q ss_pred HHHhhC--------------------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 003891 226 MALSIK--------------------------PNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLY 279 (788)
Q Consensus 226 ~al~~~--------------------------p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~ 279 (788)
+++... |.-..--...|..++..|+|.+|+.+|.+++..+|+++..|.+.|.||
T Consensus 323 kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~ 402 (539)
T KOG0548|consen 323 KALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACY 402 (539)
T ss_pred HHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHH
Confidence 877542 222333455688889999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHhhCCCChhhHHhHHHHhh
Q 003891 280 RDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMN 314 (788)
Q Consensus 280 ~~~g~~~eA~~~~~~al~l~p~~~~a~~~~lla~~ 314 (788)
.++|++..|+...+++++++|++..++.....++.
T Consensus 403 ~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~ 437 (539)
T KOG0548|consen 403 LKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALR 437 (539)
T ss_pred HHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHH
Confidence 99999999999999999999998888776544443
No 42
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.82 E-value=7.1e-17 Score=188.95 Aligned_cols=323 Identities=12% Similarity=0.044 Sum_probs=244.4
Q ss_pred HHHHHHHHHHcCCCChhhHHHHHHH---------------------------HHHHHHHHHHcCChHHHHHHHHHHHHhC
Q 003891 2 LVASYHKALSADPSYKPAAECLAIV---------------------------LTDLGTSLKLAGNTQDGIQKYYEALKID 54 (788)
Q Consensus 2 Ai~~~~kaL~~~P~~~~a~~~la~~---------------------------l~~lg~~~~~~g~~~~A~~~~~~al~~~ 54 (788)
|+..|+++++.+|++..+...++.+ +..+|..+...|++++|++.|+++++.+
T Consensus 53 Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~d 132 (822)
T PRK14574 53 VLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQALALWQSSLKKD 132 (822)
T ss_pred HHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 6777788888888774221122221 2223667888899999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHH
Q 003891 55 PHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAI 134 (788)
Q Consensus 55 p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 134 (788)
|+++.++..++..+...++.++|++.++++...+|.+... ..++.++...++..+|++.++++++.+|++......+..
T Consensus 133 P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~-l~layL~~~~~~~~~AL~~~ekll~~~P~n~e~~~~~~~ 211 (822)
T PRK14574 133 PTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNY-MTLSYLNRATDRNYDALQASSEAVRLAPTSEEVLKNHLE 211 (822)
T ss_pred CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHH-HHHHHHHHhcchHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 9999999999999999999999999999999999885554 556666666788877999999999999998887776665
Q ss_pred HHHHhhhhhh--------------------------------------hcC---CHHHHHHHHHHHHHh---CCC-----
Q 003891 135 ALTDLGTKVK--------------------------------------LEG---DINQGVAYYKKALYY---NWH----- 165 (788)
Q Consensus 135 ~l~~lg~~~~--------------------------------------~~g---~~~~A~~~~~~al~~---~p~----- 165 (788)
++..+|.... ..+ -.+.|+.-+++.+.. .|.
T Consensus 212 ~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~ 291 (822)
T PRK14574 212 ILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADY 291 (822)
T ss_pred HHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHH
Confidence 5544331100 000 123344444444442 221
Q ss_pred ----------------------------------CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC------CCHHHHH
Q 003891 166 ----------------------------------YADAMYNLGVAYGEMLKFDMAIVFYELAFHFNP------HCAEACN 205 (788)
Q Consensus 166 ----------------------------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p------~~~~~~~ 205 (788)
-..+....|..|...++.++|+.+|++++...+ .......
T Consensus 292 ~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~ 371 (822)
T PRK14574 292 QRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDAD 371 (822)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHH
Confidence 122355678889999999999999999987652 2344457
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCC---------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 003891 206 NLGVIYKDRDNLDKAVECYQMALSIKP---------------NFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAE 270 (788)
Q Consensus 206 ~la~~~~~~g~~~eA~~~~~~al~~~p---------------~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~ 270 (788)
.|...|...+++++|..++++..+..| +..+....++.++...|++.+|++.+++.+...|.+..
T Consensus 372 ~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~ 451 (822)
T PRK14574 372 DLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQN 451 (822)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Confidence 788899999999999999999988443 33557788899999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhhHHhHHHHhhhccCCCchHHHHH
Q 003891 271 AYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEA 327 (788)
Q Consensus 271 ~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~a~~~~lla~~~l~~g~~~~~~~~ 327 (788)
+...+|.++...|++.+|++.++.+..++|++..+.... +..++..++..++...
T Consensus 452 l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~--~~~al~l~e~~~A~~~ 506 (822)
T PRK14574 452 LRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQ--AETAMALQEWHQMELL 506 (822)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHH--HHHHHhhhhHHHHHHH
Confidence 999999999999999999999999999999998887764 4455555655554433
No 43
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.81 E-value=1.3e-19 Score=190.73 Aligned_cols=261 Identities=22% Similarity=0.249 Sum_probs=122.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH
Q 003891 61 YYNLGVVYSELMQYDTALGCYEKAALE--RPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTD 138 (788)
Q Consensus 61 ~~~lg~~~~~~g~~~~A~~~~~kal~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~ 138 (788)
.+.+|.+++..|++++|++.+.+.+.. .|++...|..+|.+....+++++|+..|++++..++.++.....+
T Consensus 11 ~l~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l------ 84 (280)
T PF13429_consen 11 ALRLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERL------ 84 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc------
Confidence 346799999999999999999776544 488899999999999999999999999999999988866544333
Q ss_pred hhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHcCC
Q 003891 139 LGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFN--PHCAEACNNLGVIYKDRDN 216 (788)
Q Consensus 139 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~ 216 (788)
..+ ...+++++|+++++++.+..+ ++..+.....++...++++++...++++.... +.++..+..+|.++.+.|+
T Consensus 85 -~~l-~~~~~~~~A~~~~~~~~~~~~-~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~ 161 (280)
T PF13429_consen 85 -IQL-LQDGDPEEALKLAEKAYERDG-DPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGD 161 (280)
T ss_dssp ------------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCH
T ss_pred -ccc-ccccccccccccccccccccc-ccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCC
Confidence 333 357899999999999987664 46667778888999999999999999977654 6788999999999999999
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003891 217 LDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCL 296 (788)
Q Consensus 217 ~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al 296 (788)
.++|+.+|+++++.+|++..+...++.++...|+++++.+.++...+..|+++..+..+|.++..+|++++|+.+|++++
T Consensus 162 ~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~ 241 (280)
T PF13429_consen 162 PDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKAL 241 (280)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccccc
Confidence 99999999999999999999999999999999999999999999988888899999999999999999999999999999
Q ss_pred hhCCCChhhHHhHHHHhhhccCCCchHHHHHHHHHH
Q 003891 297 KIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHRDWG 332 (788)
Q Consensus 297 ~l~p~~~~a~~~~lla~~~l~~g~~~~~~~~~~~~~ 332 (788)
+.+|+++..... ++..+...|..+++++..++..
T Consensus 242 ~~~p~d~~~~~~--~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 242 KLNPDDPLWLLA--YADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp HHSTT-HHHHHH--HHHHHT----------------
T ss_pred cccccccccccc--cccccccccccccccccccccc
Confidence 999999988765 5677788888888887665543
No 44
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.81 E-value=1.8e-16 Score=175.70 Aligned_cols=268 Identities=11% Similarity=-0.005 Sum_probs=224.1
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC
Q 003891 27 LTDLGTSLKLAGNTQDGIQKYYEALKIDPHYA-PAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNR 105 (788)
Q Consensus 27 l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~ 105 (788)
+...|......|++++|..++.++.+..|++. .+....+.++...|++++|...+++..+..|+++.++..++.++...
T Consensus 121 ~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~ 200 (409)
T TIGR00540 121 LIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRS 200 (409)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 55678899999999999999999999998875 56666799999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHhCC----CCHHHHHHHHHHHHHcC
Q 003891 106 GDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNW----HYADAMYNLGVAYGEML 181 (788)
Q Consensus 106 g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p----~~~~~~~~la~~~~~~g 181 (788)
|++++|++.+++..+....++.....+. .....+ ....+..+++.+.+.++.+..| +++..+..++..+...|
T Consensus 201 ~d~~~a~~~l~~l~k~~~~~~~~~~~l~-~~a~~~--~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g 277 (409)
T TIGR00540 201 GAWQALDDIIDNMAKAGLFDDEEFADLE-QKAEIG--LLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCD 277 (409)
T ss_pred hhHHHHHHHHHHHHHcCCCCHHHHHHHH-HHHHHH--HHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCC
Confidence 9999999999999988655443322111 111111 1223344556668888888777 58999999999999999
Q ss_pred ChHHHHHHHHHHHhcCCCCHHHH--HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH--HHHHHHHHHHHHcCCHHHHHHH
Q 003891 182 KFDMAIVFYELAFHFNPHCAEAC--NNLGVIYKDRDNLDKAVECYQMALSIKPNFS--QSLNNLGVVYTVQGKMDAAAEM 257 (788)
Q Consensus 182 ~~~~A~~~~~~al~~~p~~~~~~--~~la~~~~~~g~~~eA~~~~~~al~~~p~~~--~~~~~la~~~~~~g~~~eA~~~ 257 (788)
++++|++.++++++..|++.... ..........++.+++++.++++++..|+++ ..+..+|+++.+.|++++|.++
T Consensus 278 ~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~ 357 (409)
T TIGR00540 278 DHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADA 357 (409)
T ss_pred ChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHH
Confidence 99999999999999999887532 2333334456889999999999999999999 8899999999999999999999
Q ss_pred HH--HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 003891 258 IE--KAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKI 298 (788)
Q Consensus 258 l~--kal~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l 298 (788)
|+ ++++..|+... +..+|.++.++|+.++|.++|++++..
T Consensus 358 le~a~a~~~~p~~~~-~~~La~ll~~~g~~~~A~~~~~~~l~~ 399 (409)
T TIGR00540 358 FKNVAACKEQLDAND-LAMAADAFDQAGDKAEAAAMRQDSLGL 399 (409)
T ss_pred HHHhHHhhcCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 99 57778887655 669999999999999999999998764
No 45
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.81 E-value=1.8e-17 Score=174.98 Aligned_cols=236 Identities=17% Similarity=0.143 Sum_probs=142.7
Q ss_pred CChHHHHHHHHHHHHhCC---C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHH
Q 003891 38 GNTQDGIQKYYEALKIDP---H-YAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIA 113 (788)
Q Consensus 38 g~~~~A~~~~~~al~~~p---~-~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g~~~~A~~ 113 (788)
+..+.++..+.+++...| . .+..|+.+|.+|...|++++|+..|+++++.+|+++.+|+.+|.++...|++++|+.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~ 119 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYE 119 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 455666666767665322 2 255677777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 003891 114 CYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELA 193 (788)
Q Consensus 114 ~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 193 (788)
.|+++++++|++..++.+++.++. ..|++++|++.++++++.+|+++..... ..+....+++++|+..+++.
T Consensus 120 ~~~~Al~l~P~~~~a~~~lg~~l~-------~~g~~~eA~~~~~~al~~~P~~~~~~~~-~~l~~~~~~~~~A~~~l~~~ 191 (296)
T PRK11189 120 AFDSVLELDPTYNYAYLNRGIALY-------YGGRYELAQDDLLAFYQDDPNDPYRALW-LYLAESKLDPKQAKENLKQR 191 (296)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHH-------HCCCHHHHHHHHHHHHHhCCCCHHHHHH-HHHHHccCCHHHHHHHHHHH
Confidence 777777777776654444443333 3457777777777777777766532111 12234456677777777665
Q ss_pred HhcCCCCHHHHHHHHHHHHHcCCHHHH--HHHHH----HHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-
Q 003891 194 FHFNPHCAEACNNLGVIYKDRDNLDKA--VECYQ----MALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANP- 266 (788)
Q Consensus 194 l~~~p~~~~~~~~la~~~~~~g~~~eA--~~~~~----~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p- 266 (788)
....+... +. .+..+...|+..++ .+.+. ...++.|...++|+++|.++...|++++|+.+|+++++.+|
T Consensus 192 ~~~~~~~~--~~-~~~~~~~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~ 268 (296)
T PRK11189 192 YEKLDKEQ--WG-WNIVEFYLGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVY 268 (296)
T ss_pred HhhCCccc--cH-HHHHHHHccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCc
Confidence 54322211 11 23444444544332 22222 22244556667788888888888888888888888888775
Q ss_pred CCHHHHHHHHHHHHHcCC
Q 003891 267 TYAEAYNNLGVLYRDAGS 284 (788)
Q Consensus 267 ~~~~~~~~la~~~~~~g~ 284 (788)
++.+..+.+..+....++
T Consensus 269 ~~~e~~~~~~e~~~~~~~ 286 (296)
T PRK11189 269 NFVEHRYALLELALLGQD 286 (296)
T ss_pred hHHHHHHHHHHHHHHHhh
Confidence 555655555555444333
No 46
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.80 E-value=1.9e-17 Score=181.44 Aligned_cols=267 Identities=16% Similarity=0.116 Sum_probs=174.2
Q ss_pred HHHHHHHHHhCCCcEEEeCCCCCCCC---cccccccCCCCeEEecc---cCCCCCCCCCc----------c--EEEecCC
Q 003891 422 EKKVAAMVREDKIDILVELTGHTANN---KLGMMACQPAPVQVTWI---GYPNTTGLPTI----------D--YRITDSL 483 (788)
Q Consensus 422 ~~~~a~~i~~d~idilvdl~g~t~~~---~~~~~a~r~Apvq~~~~---g~~~ttg~~~~----------D--y~i~d~~ 483 (788)
...++..|++.++||+ ||... ..+.++.++|.+-+... |++...+-..+ | +..+| +
T Consensus 269 ~~~l~~~ir~~rpDIV-----Ht~~~~a~l~g~laA~lagvpviv~~~h~~~~~~~~r~~~~e~~~~~~a~~i~~~sd-~ 342 (578)
T PRK15490 269 IKHLVPHLCERKLDYL-----SVWQDGACLMIALAALIAGVPRIQLGLRGLPPVVRKRLFKPEYEPLYQALAVVPGVD-F 342 (578)
T ss_pred HHHHHHHHHHcCCCEE-----EEcCcccHHHHHHHHHhcCCCEEEEeecccCCcchhhHHHHHHHHhhhhceeEecch-h
Confidence 4679999999999999 77543 34555667765554322 23322211100 1 11122 1
Q ss_pred CCC-cCcc----C---CCccceEEcCCCccc--cCCCCCCC-CCC--CCCCCCCCCeEEEecCCC--CcCCHHHHHHHHH
Q 003891 484 ADP-PETK----Q---KHVEELIRLPECFLC--YTPSPEAG-PVC--PTPALTNGFITFGSFNNL--AKITPKVLQVWAR 548 (788)
Q Consensus 484 ~~p-~~~~----~---~~~e~l~~lp~~~~~--~~~~~~~~-~~~--~~~~~~~~~~~f~~~~~~--~K~~~~~~~~~~~ 548 (788)
+.- .... . .-.+++..+|+..-. |.|....+ ..+ ...+++++.+++|+++++ .|....+++++.+
T Consensus 343 v~~s~~v~~~l~~~lgip~~KI~VIyNGVD~~rf~p~~~~~~~~r~~~~~~l~~~~~vIg~VgRl~~~Kg~~~LI~A~a~ 422 (578)
T PRK15490 343 MSNNHCVTRHYADWLKLEAKHFQVVYNGVLPPSTEPSSEVPHKIWQQFTQKTQDADTTIGGVFRFVGDKNPFAWIDFAAR 422 (578)
T ss_pred hhccHHHHHHHHHHhCCCHHHEEEEeCCcchhhcCccchhhHHHHHHhhhccCCCCcEEEEEEEEehhcCHHHHHHHHHH
Confidence 111 1111 1 124677778864311 22221111 000 012345566788888875 9999999999999
Q ss_pred HHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHHHHhcccccEeecCCCC-CCchhHHHHhh
Q 003891 549 ILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPY-AGTTTTCESLY 627 (788)
Q Consensus 549 il~~~p~~~l~l~~~~~~~~~~~~~l~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~~Dv~Ld~~~~-~g~~t~~eal~ 627 (788)
+++..|+.+|+++|.| +.++.+++.++++|+. ++|.|+|.. .+....|+.+|||+-|+.+ +.+.+++|||+
T Consensus 423 llk~~pdirLvIVGdG----~~~eeLk~la~elgL~-d~V~FlG~~---~Dv~~~LaaADVfVlPS~~EGfp~vlLEAMA 494 (578)
T PRK15490 423 YLQHHPATRFVLVGDG----DLRAEAQKRAEQLGIL-ERILFVGAS---RDVGYWLQKMNVFILFSRYEGLPNVLIEAQM 494 (578)
T ss_pred HHhHCCCeEEEEEeCc----hhHHHHHHHHHHcCCC-CcEEECCCh---hhHHHHHHhCCEEEEcccccCccHHHHHHHH
Confidence 9999999999999987 6778899999999998 899999984 4667778889999999988 55999999999
Q ss_pred hCCceeecCCCccCccchh-HHHhhhCCcccccC--CHHHH---HHHHHHHhcCHHHHHHHHHHHHHHhhcCCCCChHHH
Q 003891 628 MGVPCVTMAGSVHAHNVGV-SLLTKVGLKHLIAK--NEDEY---VQLALQLASDVTALANLRMSLRDLMSKSPVCDGQNF 701 (788)
Q Consensus 628 ~GvPvvt~~g~~~~~r~~~-~~l~~~gl~~~ia~--~~~~y---~~~a~~l~~d~~~~~~~r~~~~~~~~~~~~~~~~~~ 701 (788)
+|+|||+ +++|+ .=+-.-|..+++.+ |.+++ +..+.++..+...+..++++.++.+.+ .|+.+.+
T Consensus 495 ~GlPVVA-------TdvGG~~EiV~dG~nG~LVp~~D~~aLa~ai~lA~aL~~ll~~~~~mg~~ARe~V~e--~FS~e~M 565 (578)
T PRK15490 495 VGVPVIS-------TPAGGSAECFIEGVSGFILDDAQTVNLDQACRYAEKLVNLWRSRTGICQQTQSFLQE--RFTVEHM 565 (578)
T ss_pred hCCCEEE-------eCCCCcHHHcccCCcEEEECCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hCCHHHH
Confidence 9999998 55541 00111244444433 33333 333455666666666777888887754 4999999
Q ss_pred HHHHHHHHHH
Q 003891 702 ALGLESTYRN 711 (788)
Q Consensus 702 ~~~~e~~~~~ 711 (788)
+..++++|..
T Consensus 566 v~~y~ki~~~ 575 (578)
T PRK15490 566 VGTFVKTIAS 575 (578)
T ss_pred HHHHHHHHHh
Confidence 9999998864
No 47
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.80 E-value=7.7e-17 Score=165.06 Aligned_cols=274 Identities=18% Similarity=0.183 Sum_probs=245.4
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHc--CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 003891 28 TDLGTSLKLAGNTQDGIQKYYEALKIDPHY-APAYYNLGVVYSEL--MQYDTALGCYEKAALERPMYAEAYCNMGVIYKN 104 (788)
Q Consensus 28 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~lg~~~~~~--g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~ 104 (788)
...+..+.++|+++.|++.++-.-+.+... ..+-.+|..+++.+ +++..|.++...++..+..++.++.+.|++.+.
T Consensus 423 i~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ 502 (840)
T KOG2003|consen 423 INKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFA 502 (840)
T ss_pred hhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeee
Confidence 445677889999999999987665555443 33455666666663 479999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChH
Q 003891 105 RGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFD 184 (788)
Q Consensus 105 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 184 (788)
.|++++|.+.|++++..+....+ +++++|..+..+|++++|+++|-+.-.+--++.++++.++.+|..+.+..
T Consensus 503 ngd~dka~~~ykeal~ndasc~e-------alfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~a 575 (840)
T KOG2003|consen 503 NGDLDKAAEFYKEALNNDASCTE-------ALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPA 575 (840)
T ss_pred cCcHHHHHHHHHHHHcCchHHHH-------HHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHH
Confidence 99999999999999987766544 55666777777889999999999999888899999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 003891 185 MAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAA 264 (788)
Q Consensus 185 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~ 264 (788)
+|++++.++..+-|+++.++..+|.+|-+.|+-.+|.+++-......|.+.+..-.||..|....-+++|+.+|+++--+
T Consensus 576 qaie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaali 655 (840)
T KOG2003|consen 576 QAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALI 655 (840)
T ss_pred HHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhhHHh
Q 003891 265 NPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQN 308 (788)
Q Consensus 265 ~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~a~~~ 308 (788)
.|+...-...++.|+.+.|+|.+|.+.|+......|.+.+...-
T Consensus 656 qp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkf 699 (840)
T KOG2003|consen 656 QPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKF 699 (840)
T ss_pred CccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHH
Confidence 99998888999999999999999999999999999998876543
No 48
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.80 E-value=3.5e-17 Score=172.85 Aligned_cols=227 Identities=17% Similarity=0.159 Sum_probs=183.8
Q ss_pred cCCHHHHHHHHHHHHHhCC---C-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhc
Q 003891 71 LMQYDTALGCYEKAALERP---M-YAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLE 146 (788)
Q Consensus 71 ~g~~~~A~~~~~kal~~~p---~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~ 146 (788)
.++.+.++..+.+++...+ . .+..|+.+|.+|...|++++|+..|+++++++|++..++..++.++..+|
T Consensus 39 ~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g------ 112 (296)
T PRK11189 39 TLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAG------ 112 (296)
T ss_pred chHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCC------
Confidence 3467889999999996433 3 47789999999999999999999999999999999999999999888854
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 003891 147 GDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQM 226 (788)
Q Consensus 147 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~ 226 (788)
++++|+..|+++++++|++..++.++|.++...|++++|++.++++++.+|+++..... ..+....+++++|+..+++
T Consensus 113 -~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~-~~l~~~~~~~~~A~~~l~~ 190 (296)
T PRK11189 113 -NFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPYRALW-LYLAESKLDPKQAKENLKQ 190 (296)
T ss_pred -CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHH-HHHHHccCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999998742222 2234567889999999988
Q ss_pred HHhhCCCCHHHHHHHHHHHHHcCCHHHH--HHHHH----HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 003891 227 ALSIKPNFSQSLNNLGVVYTVQGKMDAA--AEMIE----KAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDP 300 (788)
Q Consensus 227 al~~~p~~~~~~~~la~~~~~~g~~~eA--~~~l~----kal~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p 300 (788)
++...+... +. .+.++...|+..++ .+.+. ...++.|...++|+++|.++.++|++++|+.+|+++++++|
T Consensus 191 ~~~~~~~~~--~~-~~~~~~~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~ 267 (296)
T PRK11189 191 RYEKLDKEQ--WG-WNIVEFYLGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNV 267 (296)
T ss_pred HHhhCCccc--cH-HHHHHHHccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 775543222 21 35555566665443 32222 23356677889999999999999999999999999999997
Q ss_pred -CChhhHHh
Q 003891 301 -DSRNAGQN 308 (788)
Q Consensus 301 -~~~~a~~~ 308 (788)
++.+.+..
T Consensus 268 ~~~~e~~~~ 276 (296)
T PRK11189 268 YNFVEHRYA 276 (296)
T ss_pred chHHHHHHH
Confidence 55555443
No 49
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.80 E-value=2.3e-16 Score=173.82 Aligned_cols=269 Identities=11% Similarity=-0.004 Sum_probs=221.2
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC
Q 003891 27 LTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPA-YYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNR 105 (788)
Q Consensus 27 l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~-~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~ 105 (788)
+...+......|+++.|..+|.++.+.+|++... ....+.++...|++++|+..++++.+.+|+++.++..++.+|...
T Consensus 121 ~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~ 200 (398)
T PRK10747 121 YLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRT 200 (398)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence 3444666689999999999999999999987543 345589999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhhCCCcHHHHHHH-HHHHHHhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChH
Q 003891 106 GDLESAIACYERCLAVSPNFEIAKNNM-AIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFD 184 (788)
Q Consensus 106 g~~~~A~~~~~~al~~~p~~~~~~~~l-a~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 184 (788)
|++++|++.+.+..+....++.....+ ..++..+........+.+...+.+++.-+..|+++.+...++..+...|+.+
T Consensus 201 gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~ 280 (398)
T PRK10747 201 GAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHD 280 (398)
T ss_pred HhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHH
Confidence 999999999999988776654432211 1233222222222344555556666655666789999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 003891 185 MAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAA 264 (788)
Q Consensus 185 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~ 264 (788)
+|.+.++++++. +.+......++.+ ..++.+++++.+++.++.+|+++..+..+|.++...+++++|.++|+++++.
T Consensus 281 ~A~~~L~~~l~~-~~~~~l~~l~~~l--~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~ 357 (398)
T PRK10747 281 TAQQIILDGLKR-QYDERLVLLIPRL--KTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ 357 (398)
T ss_pred HHHHHHHHHHhc-CCCHHHHHHHhhc--cCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 999999999995 4455555555544 4499999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 003891 265 NPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKID 299 (788)
Q Consensus 265 ~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~ 299 (788)
.|++. .+..++.++.++|+.++|.++|++++.+.
T Consensus 358 ~P~~~-~~~~La~~~~~~g~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 358 RPDAY-DYAWLADALDRLHKPEEAAAMRRDGLMLT 391 (398)
T ss_pred CCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 99854 46789999999999999999999998764
No 50
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.80 E-value=1.6e-18 Score=171.06 Aligned_cols=244 Identities=19% Similarity=0.259 Sum_probs=224.4
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC
Q 003891 27 LTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRG 106 (788)
Q Consensus 27 l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g 106 (788)
...+|.+|+..|-+.+|.+.++.+++..| .++.+..++.+|....+...|+..+.+.++..|.+...+...+.++..++
T Consensus 226 k~Q~gkCylrLgm~r~AekqlqssL~q~~-~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~ 304 (478)
T KOG1129|consen 226 KQQMGKCYLRLGMPRRAEKQLQSSLTQFP-HPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAME 304 (478)
T ss_pred HHHHHHHHHHhcChhhhHHHHHHHhhcCC-chhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHH
Confidence 35689999999999999999999999876 47899999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHH
Q 003891 107 DLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMA 186 (788)
Q Consensus 107 ~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A 186 (788)
++++|.++|+.+++..|.+.++.. .++..|.-.++.+-|+.+|++.++..-.+++.+.++|.+.+..++++-+
T Consensus 305 ~~~~a~~lYk~vlk~~~~nvEaiA-------cia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~ 377 (478)
T KOG1129|consen 305 QQEDALQLYKLVLKLHPINVEAIA-------CIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLV 377 (478)
T ss_pred hHHHHHHHHHHHHhcCCccceeee-------eeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhh
Confidence 999999999999999999876443 3444555578999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003891 187 IVFYELAFHFNP---HCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIA 263 (788)
Q Consensus 187 ~~~~~~al~~~p---~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~ 263 (788)
+..|++++.... .-.++|+++|.+....|++.-|..+|+-++..++++.+++++||.+-.+.|+.++|..++..+-.
T Consensus 378 L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s 457 (478)
T KOG1129|consen 378 LPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKS 457 (478)
T ss_pred HHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhh
Confidence 999999998643 24789999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCCHHHHHHHHHH
Q 003891 264 ANPTYAEAYNNLGVL 278 (788)
Q Consensus 264 ~~p~~~~~~~~la~~ 278 (788)
..|+-.+..++++.+
T Consensus 458 ~~P~m~E~~~Nl~~~ 472 (478)
T KOG1129|consen 458 VMPDMAEVTTNLQFM 472 (478)
T ss_pred hCccccccccceeEE
Confidence 999988887777644
No 51
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.79 E-value=5.5e-18 Score=180.25 Aligned_cols=234 Identities=23% Similarity=0.325 Sum_probs=202.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhh
Q 003891 62 YNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGT 141 (788)
Q Consensus 62 ~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~ 141 (788)
+..|..+++.|+..+|.-+|+.+++.+|.+.++|..||.+....++-..|+..++++++++|++.++...++..|.+
T Consensus 289 f~eG~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytN--- 365 (579)
T KOG1125|consen 289 FKEGCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTN--- 365 (579)
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhh---
Confidence 67899999999999999999999999999999999999999999999999999999999999998777666666555
Q ss_pred hhhhcCCHHHHHHHHHHHHHhCCCCHHHHHH-------HHHHHHHcCChHHHHHHHHHHHhcCC--CCHHHHHHHHHHHH
Q 003891 142 KVKLEGDINQGVAYYKKALYYNWHYADAMYN-------LGVAYGEMLKFDMAIVFYELAFHFNP--HCAEACNNLGVIYK 212 (788)
Q Consensus 142 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~-------la~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~ 212 (788)
.|.-.+|.+++.+-+...|........ ...-......+..-.+.|-.+....| .+++++..||.+|.
T Consensus 366 ----eg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ 441 (579)
T KOG1125|consen 366 ----EGLQNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYN 441 (579)
T ss_pred ----hhhHHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHh
Confidence 568899999999999887654321110 00000111123445566777777777 68999999999999
Q ss_pred HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 003891 213 DRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAY 292 (788)
Q Consensus 213 ~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~~eA~~~~ 292 (788)
-.|+|++|+.||+.||..+|++...|+.||-.+....+.++|+..|++|+++.|.+..++++||..+..+|.|++|.++|
T Consensus 442 ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hl 521 (579)
T KOG1125|consen 442 LSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHL 521 (579)
T ss_pred cchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhCCCC
Q 003891 293 EQCLKIDPDS 302 (788)
Q Consensus 293 ~~al~l~p~~ 302 (788)
-.||.+.+..
T Consensus 522 L~AL~mq~ks 531 (579)
T KOG1125|consen 522 LEALSMQRKS 531 (579)
T ss_pred HHHHHhhhcc
Confidence 9999997763
No 52
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.79 E-value=7.5e-16 Score=169.84 Aligned_cols=295 Identities=13% Similarity=-0.015 Sum_probs=233.5
Q ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHH-HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH-HHHH
Q 003891 22 CLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNL-GVVYSELMQYDTALGCYEKAALERPMYAEAY-CNMG 99 (788)
Q Consensus 22 ~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l-g~~~~~~g~~~~A~~~~~kal~~~p~~~~~~-~~la 99 (788)
..+.-.+..|......|++++|.+...+.-+..+. +..++.+ +......|++++|..+++++.+.+|++.... ...+
T Consensus 82 ~~~~~~~~~gl~a~~eGd~~~A~k~l~~~~~~~~~-p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a 160 (398)
T PRK10747 82 RRARKQTEQALLKLAEGDYQQVEKLMTRNADHAEQ-PVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRV 160 (398)
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcccc-hHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHH
Confidence 35556677888889999999999888876654433 4444444 6666999999999999999999999875443 4559
Q ss_pred HHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHH--------
Q 003891 100 VIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMY-------- 171 (788)
Q Consensus 100 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~-------- 171 (788)
.++...|++++|+..++++.+..|+++.+...++.++ ...|++++|++.+.+..+....+.....
T Consensus 161 ~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~-------~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~ 233 (398)
T PRK10747 161 RIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAY-------IRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWI 233 (398)
T ss_pred HHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH-------HHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999987666555554 4467999999999999988766544222
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH
Q 003891 172 NLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKM 251 (788)
Q Consensus 172 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 251 (788)
.+........+-+...+.++..-+..|+++.+...++..+...|+.++|.+.++++++. +.++.....++.+ ..++.
T Consensus 234 ~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~-~~~~~l~~l~~~l--~~~~~ 310 (398)
T PRK10747 234 GLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR-QYDERLVLLIPRL--KTNNP 310 (398)
T ss_pred HHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-CCCHHHHHHHhhc--cCCCh
Confidence 22222223334455555555555556789999999999999999999999999999994 4456555444444 44999
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhhHHhHHHHhhhccCCCchHHHHHHHH
Q 003891 252 DAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHRD 330 (788)
Q Consensus 252 ~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~a~~~~lla~~~l~~g~~~~~~~~~~~ 330 (788)
+++++.+++.++.+|+++..+..+|.++...|++++|.++|+++++..|++... ..++..+...|+.+++.+.+++
T Consensus 311 ~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~---~~La~~~~~~g~~~~A~~~~~~ 386 (398)
T PRK10747 311 EQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDY---AWLADALDRLHKPEEAAAMRRD 386 (398)
T ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHH---HHHHHHHHHcCCHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999987652 3577888889998888776654
No 53
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.78 E-value=1.2e-17 Score=170.41 Aligned_cols=284 Identities=19% Similarity=0.190 Sum_probs=243.5
Q ss_pred HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 003891 21 ECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGV 100 (788)
Q Consensus 21 ~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~ 100 (788)
...+.-....|..++++.+|.+|+..|..+++..|+++..|.+.+.+++..++|++|....++.++++|.....+...+.
T Consensus 46 ~~~Ae~~k~~gn~~yk~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~ 125 (486)
T KOG0550|consen 46 AQQAEEAKEEGNAFYKQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQ 125 (486)
T ss_pred HHHHHHHHhhcchHHHHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhh
Confidence 34566788889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHCCCHHHHHHHHHHHH------------hhCCCcHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHhCCCCHH
Q 003891 101 IYKNRGDLESAIACYERCL------------AVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYAD 168 (788)
Q Consensus 101 ~~~~~g~~~~A~~~~~~al------------~~~p~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~ 168 (788)
++...++..+|.+.++..- .+.|.+... -.....-..-+.++...+++++|...--..+++++.+.+
T Consensus 126 c~~a~~~~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~-pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n~~ 204 (486)
T KOG0550|consen 126 CHLALSDLIEAEEKLKSKQAYKAANALPTLEKLAPSHSRE-PACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDATNAE 204 (486)
T ss_pred hhhhhHHHHHHHHHhhhhhhhHHhhhhhhhhcccccccCC-chhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccchhH
Confidence 9999999888887776221 001111000 000111122244555678999999999999999999999
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCH------------HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC--
Q 003891 169 AMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCA------------EACNNLGVIYKDRDNLDKAVECYQMALSIKPNF-- 234 (788)
Q Consensus 169 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~------------~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~-- 234 (788)
+++..|.+++..++.+.|+..|++++.++|+.. ..+..-|+-.++.|++.+|.++|..+|.++|++
T Consensus 205 al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~ 284 (486)
T KOG0550|consen 205 ALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKK 284 (486)
T ss_pred HHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccc
Confidence 999999999999999999999999999998753 355667888999999999999999999999987
Q ss_pred --HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhhH
Q 003891 235 --SQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAG 306 (788)
Q Consensus 235 --~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~a~ 306 (788)
...|.+++.+...+|+..+|+.-.+.++++++....++...|.|+..++++++|++.|+++++...+ ...+
T Consensus 285 ~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s-~e~r 357 (486)
T KOG0550|consen 285 TNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKD-CEIR 357 (486)
T ss_pred hhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-cchH
Confidence 4478999999999999999999999999999999999999999999999999999999999998776 4433
No 54
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.78 E-value=1.7e-16 Score=161.41 Aligned_cols=201 Identities=25% Similarity=0.282 Sum_probs=122.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHH
Q 003891 58 APAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALT 137 (788)
Q Consensus 58 ~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~ 137 (788)
...++.+|.++...|++++|+..++++++.+|++..++..+|.++...|++++|++.++++++..|++
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~------------ 98 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNN------------ 98 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC------------
Confidence 45555666666666666666666666666555555555555555555555555555555555555554
Q ss_pred HhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHcC
Q 003891 138 DLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFN--PHCAEACNNLGVIYKDRD 215 (788)
Q Consensus 138 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g 215 (788)
...+..+|.++...|++++|++.+++++... +.....+..+|.++...|
T Consensus 99 -----------------------------~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 149 (234)
T TIGR02521 99 -----------------------------GDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAG 149 (234)
T ss_pred -----------------------------HHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcC
Confidence 4444444555555555555555555555432 334455666666666666
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003891 216 NLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQC 295 (788)
Q Consensus 216 ~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~a 295 (788)
++++|...++++++.+|++...+..+|.++...|++++|+.++++++...|.++..+..++.++...|+.++|..+.+.+
T Consensus 150 ~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 229 (234)
T TIGR02521 150 DFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQL 229 (234)
T ss_pred CHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 66666666666666666666666666777777777777777777766666666666666667777777777776666665
Q ss_pred HhhC
Q 003891 296 LKID 299 (788)
Q Consensus 296 l~l~ 299 (788)
....
T Consensus 230 ~~~~ 233 (234)
T TIGR02521 230 QKLF 233 (234)
T ss_pred HhhC
Confidence 5443
No 55
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.77 E-value=7.8e-16 Score=164.59 Aligned_cols=291 Identities=15% Similarity=0.074 Sum_probs=264.0
Q ss_pred HHHHHHHHHcCCCChhhHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 003891 3 VASYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYE 82 (788)
Q Consensus 3 i~~~~kaL~~~P~~~~a~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 82 (788)
..++++++...|..... +...+..+...|+...|..++.++++.+|++.+.|+..-.+.....+++.|..+|.
T Consensus 570 ~Allqkav~~~pkae~l-------wlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~lla 642 (913)
T KOG0495|consen 570 EALLQKAVEQCPKAEIL-------WLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLA 642 (913)
T ss_pred HHHHHHHHHhCCcchhH-------HHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHH
Confidence 46789999999987666 44556667778999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHh
Q 003891 83 KAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYY 162 (788)
Q Consensus 83 kal~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~ 162 (788)
++....|. ..+|+.-+.+...+++.++|+++++++++..|.....+ ..+|+++..+++.+.|.+.|...++.
T Consensus 643 kar~~sgT-eRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~-------lmlGQi~e~~~~ie~aR~aY~~G~k~ 714 (913)
T KOG0495|consen 643 KARSISGT-ERVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLW-------LMLGQIEEQMENIEMAREAYLQGTKK 714 (913)
T ss_pred HHhccCCc-chhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHH-------HHHhHHHHHHHHHHHHHHHHHhcccc
Confidence 99987765 78899999999999999999999999999999987554 45566666677999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC--------
Q 003891 163 NWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNF-------- 234 (788)
Q Consensus 163 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~-------- 234 (788)
.|.....|..++.+-...|+.-.|...++++.-.+|++...|......-.+.|+.++|...+.+|++..|.+
T Consensus 715 cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI 794 (913)
T KOG0495|consen 715 CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAI 794 (913)
T ss_pred CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999887654
Q ss_pred ----------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 003891 235 ----------------------SQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAY 292 (788)
Q Consensus 235 ----------------------~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~~eA~~~~ 292 (788)
+.++...|.++....++++|.++|+++++.+|++.++|..+-..+...|.-++-.+.|
T Consensus 795 ~le~~~~rkTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~ 874 (913)
T KOG0495|consen 795 WLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVL 874 (913)
T ss_pred HhccCcccchHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHH
Confidence 3467788899999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhCCCChhhHHh
Q 003891 293 EQCLKIDPDSRNAGQN 308 (788)
Q Consensus 293 ~~al~l~p~~~~a~~~ 308 (788)
.++....|.+-..|..
T Consensus 875 ~~c~~~EP~hG~~W~a 890 (913)
T KOG0495|consen 875 KKCETAEPTHGELWQA 890 (913)
T ss_pred HHHhccCCCCCcHHHH
Confidence 9999999998776654
No 56
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.77 E-value=2.3e-16 Score=160.36 Aligned_cols=201 Identities=18% Similarity=0.177 Sum_probs=141.5
Q ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 003891 22 CLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVI 101 (788)
Q Consensus 22 ~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~ 101 (788)
..+..+..+|..+...|++++|+..++++++.+|++..++..+|.++...|++++|++.++++++..|.+...+..+|.+
T Consensus 29 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 108 (234)
T TIGR02521 29 KAAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTF 108 (234)
T ss_pred cHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Confidence 45778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 003891 102 YKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEML 181 (788)
Q Consensus 102 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 181 (788)
+...|++++|++.++++++..+... ....+..+|.++...|++++|...++++++.+|++...+..+|.++...|
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~ 183 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQ-----PARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRG 183 (234)
T ss_pred HHHcccHHHHHHHHHHHHhcccccc-----chHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcC
Confidence 9999999999999999987532110 01122233444444445555555555555555555444555555555555
Q ss_pred ChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003891 182 KFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMA 227 (788)
Q Consensus 182 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~a 227 (788)
++++|+..++++++..|.+...+..++.++...|+.++|..+.+.+
T Consensus 184 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 229 (234)
T TIGR02521 184 QYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQL 229 (234)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 5555555555544444444444444444444444444444444433
No 57
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.77 E-value=2e-16 Score=150.61 Aligned_cols=205 Identities=21% Similarity=0.197 Sum_probs=144.0
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 003891 93 EAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYN 172 (788)
Q Consensus 93 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 172 (788)
.+...||.-|+..|++..|.+.++++++.+|++..++..++.+|.. .|+.+.|.+.|+++++++|++.+++++
T Consensus 36 ~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~-------~Ge~~~A~e~YrkAlsl~p~~GdVLNN 108 (250)
T COG3063 36 KARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQK-------LGENDLADESYRKALSLAPNNGDVLNN 108 (250)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH-------cCChhhHHHHHHHHHhcCCCccchhhh
Confidence 4556666666666666666666666666666665554444433333 446666666666666677777777777
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC
Q 003891 173 LGVAYGEMLKFDMAIVFYELAFHF--NPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGK 250 (788)
Q Consensus 173 la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 250 (788)
.|..++.+|++++|...|++++.. .+.....+.|+|.|..+.|+++.|.++|+++++.+|+++.....++..+++.|+
T Consensus 109 YG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~ 188 (250)
T COG3063 109 YGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGD 188 (250)
T ss_pred hhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhccc
Confidence 777777777777777777777763 344566777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChh
Q 003891 251 MDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRN 304 (788)
Q Consensus 251 ~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~ 304 (788)
|-.|..++++.....+-..+.+.....+-...|+-+.|-.+=.+..+..|...+
T Consensus 189 y~~Ar~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~e 242 (250)
T COG3063 189 YAPARLYLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSEE 242 (250)
T ss_pred chHHHHHHHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHH
Confidence 777777777777776666777777777777777777777777777777776554
No 58
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.76 E-value=2.7e-15 Score=175.76 Aligned_cols=301 Identities=14% Similarity=0.068 Sum_probs=191.9
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC
Q 003891 27 LTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRG 106 (788)
Q Consensus 27 l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g 106 (788)
.+..+...+++|+++.|+..|+++++.+|+++.....+..++...|+.++|+.++++++...|.....+..+|.++..+|
T Consensus 37 ~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~g 116 (822)
T PRK14574 37 QYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEK 116 (822)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcC
Confidence 55566666777777777777777777777764332355555555555555555555555222233333333344555555
Q ss_pred CHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH--------------------------hhhhhhhcCCHHHHHHHHHHHH
Q 003891 107 DLESAIACYERCLAVSPNFEIAKNNMAIALTD--------------------------LGTKVKLEGDINQGVAYYKKAL 160 (788)
Q Consensus 107 ~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~--------------------------lg~~~~~~g~~~~A~~~~~~al 160 (788)
++++|++.|+++++.+|+++..+..++.++.. ++.++...++..+|++.+++++
T Consensus 117 dyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~ekll 196 (822)
T PRK14574 117 RWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDALQASSEAV 196 (822)
T ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 55555555555555555555444433322211 2223333567767999999999
Q ss_pred HhCCCCHHHHHHHHHHHHHcCChHH------------------------------------------------HHHHHHH
Q 003891 161 YYNWHYADAMYNLGVAYGEMLKFDM------------------------------------------------AIVFYEL 192 (788)
Q Consensus 161 ~~~p~~~~~~~~la~~~~~~g~~~~------------------------------------------------A~~~~~~ 192 (788)
+.+|++.+.+..+..++...|-... |+..+++
T Consensus 197 ~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~ 276 (822)
T PRK14574 197 RLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQN 276 (822)
T ss_pred HhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHH
Confidence 9999988876666555544443322 2233333
Q ss_pred HHhc---CCC---------------------------------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 003891 193 AFHF---NPH---------------------------------------CAEACNNLGVIYKDRDNLDKAVECYQMALSI 230 (788)
Q Consensus 193 al~~---~p~---------------------------------------~~~~~~~la~~~~~~g~~~eA~~~~~~al~~ 230 (788)
.+.. .|. -..+....|..|...++.++|+.+|++++..
T Consensus 277 l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~ 356 (822)
T PRK14574 277 LLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYS 356 (822)
T ss_pred HHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhc
Confidence 3321 121 1223344678888888899999999988776
Q ss_pred CC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---------------CCHHHHHHHHHHHHHcCCHHHHH
Q 003891 231 KP------NFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANP---------------TYAEAYNNLGVLYRDAGSISLAI 289 (788)
Q Consensus 231 ~p------~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p---------------~~~~~~~~la~~~~~~g~~~eA~ 289 (788)
.+ ........|...|...+++++|..++++..+..| +..++...++.++...|++.+|.
T Consensus 357 ~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae 436 (822)
T PRK14574 357 DGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQ 436 (822)
T ss_pred cccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHH
Confidence 52 2233356788888999999999999999887443 33567778899999999999999
Q ss_pred HHHHHHHhhCCCChhhHHhHHHHhhhccCCCchHHHHHHH
Q 003891 290 DAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHR 329 (788)
Q Consensus 290 ~~~~~al~l~p~~~~a~~~~lla~~~l~~g~~~~~~~~~~ 329 (788)
+.+++.+...|.|...... .+..+...|...++.+..+
T Consensus 437 ~~le~l~~~aP~n~~l~~~--~A~v~~~Rg~p~~A~~~~k 474 (822)
T PRK14574 437 KKLEDLSSTAPANQNLRIA--LASIYLARDLPRKAEQELK 474 (822)
T ss_pred HHHHHHHHhCCCCHHHHHH--HHHHHHhcCCHHHHHHHHH
Confidence 9999999999998887654 5666777777766665543
No 59
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.76 E-value=2.7e-16 Score=149.63 Aligned_cols=211 Identities=22% Similarity=0.176 Sum_probs=138.2
Q ss_pred HHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 003891 20 AECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMG 99 (788)
Q Consensus 20 ~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~la 99 (788)
....+.+...+|..|+..|++..|...++++++.+|++..+|..++.+|...|+.+.|.+.|+++++++|++.+++++.|
T Consensus 31 ~~~aa~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG 110 (250)
T COG3063 31 RNEAAKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYG 110 (250)
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhh
Confidence 34556777888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 003891 100 VIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGE 179 (788)
Q Consensus 100 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 179 (788)
..++.+|++++|...|++|+.. |... ..+..+.++|.+..+.|+++.|.++|+++++.+|+.+.....++..++.
T Consensus 111 ~FLC~qg~~~eA~q~F~~Al~~-P~Y~----~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~ 185 (250)
T COG3063 111 AFLCAQGRPEEAMQQFERALAD-PAYG----EPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYK 185 (250)
T ss_pred HHHHhCCChHHHHHHHHHHHhC-CCCC----CcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHh
Confidence 8888888888888888888753 3322 1123344444444445555555555555555555555555555555555
Q ss_pred cCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Q 003891 180 MLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFS 235 (788)
Q Consensus 180 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~ 235 (788)
.|++-.|..++++.....+...+.+.....+-...|+-+.+-++=.+.-...|...
T Consensus 186 ~~~y~~Ar~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~ 241 (250)
T COG3063 186 AGDYAPARLYLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSE 241 (250)
T ss_pred cccchHHHHHHHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcH
Confidence 55555555555555544444444444444444555555555444444444444443
No 60
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.76 E-value=3.5e-16 Score=155.61 Aligned_cols=262 Identities=18% Similarity=0.224 Sum_probs=181.6
Q ss_pred HHHHHHHHHHcCCCChhhHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 003891 2 LVASYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCY 81 (788)
Q Consensus 2 Ai~~~~kaL~~~P~~~~a~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 81 (788)
|+..|..|++.+|++-.+ ++..|..|+..|+-..|+.-+.+++++.|+...+....|.+++++|++++|..-|
T Consensus 57 ALt~yHaAve~dp~~Y~a-------ifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~Gele~A~~DF 129 (504)
T KOG0624|consen 57 ALTHYHAAVEGDPNNYQA-------IFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQGELEQAEADF 129 (504)
T ss_pred HHHHHHHHHcCCchhHHH-------HHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhhcccHHHHHHHH
Confidence 678899999999998887 5555666666677777777777777777777777777777777777777777777
Q ss_pred HHHHHhCCCCH---HHH------------HHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhc
Q 003891 82 EKAALERPMYA---EAY------------CNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLE 146 (788)
Q Consensus 82 ~kal~~~p~~~---~~~------------~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~ 146 (788)
.++++.+|++. +++ ......+...|++..|+++....+++.|=+...+. ..+.+|...
T Consensus 130 ~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~-------~Rakc~i~~ 202 (504)
T KOG0624|consen 130 DQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQ-------ARAKCYIAE 202 (504)
T ss_pred HHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHH-------HHHHHHHhc
Confidence 77777666431 111 12223344456666666666666666665443322 233344445
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHH-----------------------
Q 003891 147 GDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEA----------------------- 203 (788)
Q Consensus 147 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~----------------------- 203 (788)
|+...|+.-++.+-++..++.+.++.++.+++..|+.+.++...+++++++|+.-..
T Consensus 203 ~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~~YKklkKv~K~les~e~~ie~ 282 (504)
T KOG0624|consen 203 GEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCFPFYKKLKKVVKSLESAEQAIEE 282 (504)
T ss_pred CcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 566666666666666666666666666666666666666666666666666553221
Q ss_pred ---------------------------HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 003891 204 ---------------------------CNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAE 256 (788)
Q Consensus 204 ---------------------------~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~ 256 (788)
...+..|+..-+++.+|+..+.++++.+|++.+++...+.+|.....|+.|+.
T Consensus 283 ~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~ 362 (504)
T KOG0624|consen 283 KHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIH 362 (504)
T ss_pred hhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHH
Confidence 12245566667889999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCHHHHHHHHH
Q 003891 257 MIEKAIAANPTYAEAYNNLGV 277 (788)
Q Consensus 257 ~l~kal~~~p~~~~~~~~la~ 277 (788)
-|++|.+.++++..+.-.+-.
T Consensus 363 dye~A~e~n~sn~~~reGle~ 383 (504)
T KOG0624|consen 363 DYEKALELNESNTRAREGLER 383 (504)
T ss_pred HHHHHHhcCcccHHHHHHHHH
Confidence 999999999998776554433
No 61
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.76 E-value=3.7e-16 Score=160.09 Aligned_cols=248 Identities=21% Similarity=0.179 Sum_probs=228.1
Q ss_pred cCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Q 003891 37 AGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYE 116 (788)
Q Consensus 37 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 116 (788)
-.++.+|.++...++..+.-++.++.+.|.+.+..|++++|.+.|++++..+....++++++|..+..+|++++|+++|-
T Consensus 469 gk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~ 548 (840)
T KOG2003|consen 469 GKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFL 548 (840)
T ss_pred ccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHH
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhCCCcHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 003891 117 RCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHF 196 (788)
Q Consensus 117 ~al~~~p~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 196 (788)
+.-.+--++ +.++.+++.+|....+..+|++++.++..+-|+++.++..+|.+|-+.|+-.+|.+++-.....
T Consensus 549 klh~il~nn-------~evl~qianiye~led~aqaie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyry 621 (840)
T KOG2003|consen 549 KLHAILLNN-------AEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY 621 (840)
T ss_pred HHHHHHHhh-------HHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc
Confidence 886654444 5566777777777889999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 003891 197 NPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLG 276 (788)
Q Consensus 197 ~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~la 276 (788)
.|.+.+..-.+|..|....-+++|+.+|+++--+.|+.......++.|+.+.|+|.+|.+.|+..-...|.+.+.+..|.
T Consensus 622 fp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflv 701 (840)
T KOG2003|consen 622 FPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLV 701 (840)
T ss_pred cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHcCCHHHHHHHH
Q 003891 277 VLYRDAGSISLAIDAY 292 (788)
Q Consensus 277 ~~~~~~g~~~eA~~~~ 292 (788)
.+.-.+|-. +|.++-
T Consensus 702 ri~~dlgl~-d~key~ 716 (840)
T KOG2003|consen 702 RIAGDLGLK-DAKEYA 716 (840)
T ss_pred HHhccccch-hHHHHH
Confidence 888887743 344443
No 62
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.75 E-value=4.5e-16 Score=170.35 Aligned_cols=296 Identities=16% Similarity=0.108 Sum_probs=247.7
Q ss_pred HHHHHHHHHHcCCCChhhHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 003891 2 LVASYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKI-DPHYAPAYYNLGVVYSELMQYDTALGC 80 (788)
Q Consensus 2 Ai~~~~kaL~~~P~~~~a~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~lg~~~~~~g~~~~A~~~ 80 (788)
+++.++++++.+|.|+.+ .+.++..|..+++.+.|.+..+++++. ...++.+|..++.++...+++.+|+..
T Consensus 463 slqale~av~~d~~dp~~-------if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~v 535 (799)
T KOG4162|consen 463 SLQALEEAVQFDPTDPLV-------IFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDV 535 (799)
T ss_pred HHHHHHHHHhcCCCCchH-------HHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHH
Confidence 578899999999999877 777788888889999999999999999 455788999999999999999999999
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHH--HHHHHHhhhhhhhcCCHHHHHHHHHH
Q 003891 81 YEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNM--AIALTDLGTKVKLEGDINQGVAYYKK 158 (788)
Q Consensus 81 ~~kal~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l--a~~l~~lg~~~~~~g~~~~A~~~~~~ 158 (788)
.+.+++..|+|.........+-...++.++|+..+...+.+-.........+ +......+.......+..+|++.+++
T Consensus 536 vd~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ 615 (799)
T KOG4162|consen 536 VDAALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRY 615 (799)
T ss_pred HHHHHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHH
Confidence 9999999998887777777788888999999999888887755332222211 12222223333344556666666665
Q ss_pred HHHhC-------------C--------CC-----HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 003891 159 ALYYN-------------W--------HY-----ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYK 212 (788)
Q Consensus 159 al~~~-------------p--------~~-----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 212 (788)
+...- | +. ...|...+..+...++.++|..++.++-++.|.....|+..|.++.
T Consensus 616 ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~ 695 (799)
T KOG4162|consen 616 LSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLE 695 (799)
T ss_pred HHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHH
Confidence 54321 1 11 2356788899999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHH--HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 003891 213 DRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAE--MIEKAIAANPTYAEAYNNLGVLYRDAGSISLAID 290 (788)
Q Consensus 213 ~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~--~l~kal~~~p~~~~~~~~la~~~~~~g~~~eA~~ 290 (788)
.+|++++|...|..++.++|++..+...+|.++.+.|+..-|.. .+..+++++|.++++|+.+|.++.++|+.++|.+
T Consensus 696 ~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aae 775 (799)
T KOG4162|consen 696 VKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAE 775 (799)
T ss_pred HHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHH
Confidence 99999999999999999999999999999999999999888888 9999999999999999999999999999999999
Q ss_pred HHHHHHhhCCCChh
Q 003891 291 AYEQCLKIDPDSRN 304 (788)
Q Consensus 291 ~~~~al~l~p~~~~ 304 (788)
+|+-++++.+.++-
T Consensus 776 cf~aa~qLe~S~PV 789 (799)
T KOG4162|consen 776 CFQAALQLEESNPV 789 (799)
T ss_pred HHHHHHhhccCCCc
Confidence 99999999998764
No 63
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.75 E-value=7.9e-15 Score=145.57 Aligned_cols=267 Identities=20% Similarity=0.204 Sum_probs=232.8
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHH
Q 003891 29 DLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMY-----AEAYCNMGVIYK 103 (788)
Q Consensus 29 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~-----~~~~~~la~~~~ 103 (788)
-.|.-+.-..+.++|++.|.++++.+|...++...||+.+...|..+.|+..-+..++ .|+. ..+...||.-|+
T Consensus 40 v~GlNfLLs~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~-spdlT~~qr~lAl~qL~~Dym 118 (389)
T COG2956 40 VKGLNFLLSNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLE-SPDLTFEQRLLALQQLGRDYM 118 (389)
T ss_pred HhHHHHHhhcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhc-CCCCchHHHHHHHHHHHHHHH
Confidence 3566777789999999999999999999999999999999999999999998776654 4543 458899999999
Q ss_pred HCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHH
Q 003891 104 NRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYA-----DAMYNLGVAYG 178 (788)
Q Consensus 104 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~-----~~~~~la~~~~ 178 (788)
..|-++.|...|....+...--. .++..+-.+|....++++|++..++..++.++.. ..+..++..+.
T Consensus 119 ~aGl~DRAE~~f~~L~de~efa~-------~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~ 191 (389)
T COG2956 119 AAGLLDRAEDIFNQLVDEGEFAE-------GALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQAL 191 (389)
T ss_pred HhhhhhHHHHHHHHHhcchhhhH-------HHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHh
Confidence 99999999999999876432222 3455666778888999999999999999987753 46788999999
Q ss_pred HcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHHcCCHHHHHHH
Q 003891 179 EMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNF-SQSLNNLGVVYTVQGKMDAAAEM 257 (788)
Q Consensus 179 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~eA~~~ 257 (788)
...+.+.|+..++++++.+|++..+-..+|.++...|+|++|++.++.+++.+|+. +++...|..+|..+|+.++.+..
T Consensus 192 ~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~f 271 (389)
T COG2956 192 ASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNF 271 (389)
T ss_pred hhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999987 56888999999999999999999
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChh
Q 003891 258 IEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRN 304 (788)
Q Consensus 258 l~kal~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~ 304 (788)
+.++.+..+. +++-..++.+-....-.+.|..++.+-+...|+-..
T Consensus 272 L~~~~~~~~g-~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~g 317 (389)
T COG2956 272 LRRAMETNTG-ADAELMLADLIELQEGIDAAQAYLTRQLRRKPTMRG 317 (389)
T ss_pred HHHHHHccCC-ccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHH
Confidence 9999998876 556677788888888889999999999999997443
No 64
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.75 E-value=3.5e-16 Score=171.51 Aligned_cols=244 Identities=23% Similarity=0.312 Sum_probs=205.6
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCC-
Q 003891 54 DPHYAPAYYNLGVVYSELMQYDTALGCYEKAALE--------RPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPN- 124 (788)
Q Consensus 54 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~- 124 (788)
.|.-..+...++..|..+|+|++|+..++++++. .|.-......+|.+|..++++++|+..|++++.+...
T Consensus 195 ~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~ 274 (508)
T KOG1840|consen 195 DPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEV 274 (508)
T ss_pred CchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHh
Confidence 4666777888999999999999999999999987 4555566677999999999999999999999987431
Q ss_pred cHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHhCC--------CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 003891 125 FEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNW--------HYADAMYNLGVAYGEMLKFDMAIVFYELAFHF 196 (788)
Q Consensus 125 ~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p--------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 196 (788)
....+...+.++.+|+..|...|++++|..++++++++.. +-...+.+++.++..++++++|+.++++++++
T Consensus 275 ~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i 354 (508)
T KOG1840|consen 275 FGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKI 354 (508)
T ss_pred cCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHH
Confidence 1111224577888999999999999999999999998732 23446788999999999999999999999986
Q ss_pred C--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 003891 197 N--------PHCAEACNNLGVIYKDRDNLDKAVECYQMALSIK--------PNFSQSLNNLGVVYTVQGKMDAAAEMIEK 260 (788)
Q Consensus 197 ~--------p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~--------p~~~~~~~~la~~~~~~g~~~eA~~~l~k 260 (788)
. +.-+..+.++|.+|..+|++++|.++|++++++. +.....+.++|..|.+.+++.+|...|.+
T Consensus 355 ~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~ 434 (508)
T KOG1840|consen 355 YLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEE 434 (508)
T ss_pred HHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHH
Confidence 2 2346789999999999999999999999999874 23355889999999999999999999999
Q ss_pred HHHh-------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 003891 261 AIAA-------NPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLK 297 (788)
Q Consensus 261 al~~-------~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~ 297 (788)
+..+ .|+....+.+|+.+|..+|++++|+++.++++.
T Consensus 435 ~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 435 AKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 8876 344467899999999999999999999999874
No 65
>PLN02789 farnesyltranstransferase
Probab=99.74 E-value=5e-16 Score=163.59 Aligned_cols=206 Identities=12% Similarity=0.046 Sum_probs=125.2
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC-CHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhcCCH
Q 003891 71 LMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRG-DLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDI 149 (788)
Q Consensus 71 ~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~g~~ 149 (788)
.+++++|+..+.++++++|.+..+|...+.++...| ++++++..++++++.+|++..+|...+.++..++. ..+
T Consensus 50 ~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~-----~~~ 124 (320)
T PLN02789 50 DERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGP-----DAA 124 (320)
T ss_pred CCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCc-----hhh
Confidence 344555555555555555555555555555555555 35555666666666666555555555444444331 112
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc---CCH----HHHHH
Q 003891 150 NQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDR---DNL----DKAVE 222 (788)
Q Consensus 150 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~---g~~----~eA~~ 222 (788)
++++.+++++++.+|++..+|...+.++...|+++++++.+.++++.+|.+..+|+..+.++... |.+ ++++.
T Consensus 125 ~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~ 204 (320)
T PLN02789 125 NKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRDSELK 204 (320)
T ss_pred HHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccHHHHHH
Confidence 45566666666666666666666666666666666666666666666666666666666665544 222 35666
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 003891 223 CYQMALSIKPNFSQSLNNLGVVYTV----QGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRD 281 (788)
Q Consensus 223 ~~~~al~~~p~~~~~~~~la~~~~~----~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~ 281 (788)
+..+++..+|++..+|..++.++.. .++..+|++.+.+++...|+++.++..|+.+|..
T Consensus 205 y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 205 YTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCE 267 (320)
T ss_pred HHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHh
Confidence 6667777777777777777777666 3445667777777777777777777777777764
No 66
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.74 E-value=6.3e-16 Score=169.51 Aligned_cols=241 Identities=25% Similarity=0.347 Sum_probs=203.8
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------
Q 003891 24 AIVLTDLGTSLKLAGNTQDGIQKYYEALKI--------DPHYAPAYYNLGVVYSELMQYDTALGCYEKAALE-------- 87 (788)
Q Consensus 24 a~~l~~lg~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~-------- 87 (788)
..+...++..|..+|+|++|+..++++++. .|.-......+|.+|..++++.+|+..|++++.+
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 444666999999999999999999999998 4555556667999999999999999999999875
Q ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCc-HHHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHhCC--
Q 003891 88 RPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNF-EIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNW-- 164 (788)
Q Consensus 88 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p-- 164 (788)
+|..+.++.+||.+|...|++++|..++++++++.... ......++..+..++.++..++++++|+.++++++++..
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~ 358 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDA 358 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhh
Confidence 44456789999999999999999999999999885441 112334566778888889999999999999999987632
Q ss_pred ------CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 003891 165 ------HYADAMYNLGVAYGEMLKFDMAIVFYELAFHFN--------PHCAEACNNLGVIYKDRDNLDKAVECYQMALSI 230 (788)
Q Consensus 165 ------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~ 230 (788)
.-+..+.++|.+|..+|++++|.++|++++.+. +.....+.++|..|.+.+++.+|...|.++..+
T Consensus 359 ~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i 438 (508)
T KOG1840|consen 359 PGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDI 438 (508)
T ss_pred ccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence 335678999999999999999999999999873 233568899999999999999999999998876
Q ss_pred -------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 003891 231 -------KPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAA 264 (788)
Q Consensus 231 -------~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~ 264 (788)
.|+....+.+|+.+|..+|++++|+++.++++..
T Consensus 439 ~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~~ 479 (508)
T KOG1840|consen 439 MKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLNA 479 (508)
T ss_pred HHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 3455668999999999999999999999999854
No 67
>PLN02789 farnesyltranstransferase
Probab=99.73 E-value=3.1e-15 Score=157.60 Aligned_cols=212 Identities=13% Similarity=0.093 Sum_probs=191.4
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCH
Q 003891 30 LGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELM-QYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDL 108 (788)
Q Consensus 30 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g-~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g~~ 108 (788)
+-.++...+.+++|+..+.++++++|++..+|...+.++..+| ++++++..++++++.+|++..+|...+.++...|+.
T Consensus 43 ~ra~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~ 122 (320)
T PLN02789 43 FRAVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPD 122 (320)
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCch
Confidence 3344667789999999999999999999999999999999998 689999999999999999999999999999999874
Q ss_pred --HHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc---CCh
Q 003891 109 --ESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEM---LKF 183 (788)
Q Consensus 109 --~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~---g~~ 183 (788)
++++.+++++++.+|++..+|...+.++..++ +++++++++.++++.+|.+..+|..++.++... |.+
T Consensus 123 ~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~-------~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~ 195 (320)
T PLN02789 123 AANKELEFTRKILSLDAKNYHAWSHRQWVLRTLG-------GWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGL 195 (320)
T ss_pred hhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhh-------hHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccc
Confidence 78899999999999999998888888877765 799999999999999999999999999998776 333
Q ss_pred ----HHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Q 003891 184 ----DMAIVFYELAFHFNPHCAEACNNLGVIYKD----RDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQ 248 (788)
Q Consensus 184 ----~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~ 248 (788)
++++++..+++..+|++..+|+.++.++.. .++..+|+..+.++++.+|.+..++..|+.+|...
T Consensus 196 ~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~ 268 (320)
T PLN02789 196 EAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEG 268 (320)
T ss_pred cccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHhh
Confidence 578888999999999999999999999988 45678899999999999999999999999999763
No 68
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.73 E-value=7.5e-15 Score=145.74 Aligned_cols=259 Identities=20% Similarity=0.200 Sum_probs=230.3
Q ss_pred HHHHHHHHHHcCCCChhhHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHcCCHHH
Q 003891 2 LVASYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHY-----APAYYNLGVVYSELMQYDT 76 (788)
Q Consensus 2 Ai~~~~kaL~~~P~~~~a~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~lg~~~~~~g~~~~ 76 (788)
|++.|...++.+|+..++ ...+|+.+...|..+.|+.+-+..++ .|+. ..+...||.-|+..|-++.
T Consensus 54 AvdlF~e~l~~d~~t~e~-------~ltLGnLfRsRGEvDRAIRiHQ~L~~-spdlT~~qr~lAl~qL~~Dym~aGl~DR 125 (389)
T COG2956 54 AVDLFLEMLQEDPETFEA-------HLTLGNLFRSRGEVDRAIRIHQTLLE-SPDLTFEQRLLALQQLGRDYMAAGLLDR 125 (389)
T ss_pred HHHHHHHHHhcCchhhHH-------HHHHHHHHHhcchHHHHHHHHHHHhc-CCCCchHHHHHHHHHHHHHHHHhhhhhH
Confidence 788999999999998887 77888889999999999998877665 4543 5588999999999999999
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHH
Q 003891 77 ALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYY 156 (788)
Q Consensus 77 A~~~~~kal~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~ 156 (788)
|...|....+....-..+...|..+|....+|++|++..++..++.++.. ...++..|..++..+....+.+.|...+
T Consensus 126 AE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~--~~eIAqfyCELAq~~~~~~~~d~A~~~l 203 (389)
T COG2956 126 AEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTY--RVEIAQFYCELAQQALASSDVDRARELL 203 (389)
T ss_pred HHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccc--hhHHHHHHHHHHHHHhhhhhHHHHHHHH
Confidence 99999999887767788999999999999999999999999999988764 4577899999999999999999999999
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Q 003891 157 KKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHC-AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFS 235 (788)
Q Consensus 157 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~ 235 (788)
.++++.+|+...+-..+|.++...|+|++|++.++.+++.+|+. +++...+..+|..+|+.++.+..+.++.+..+. .
T Consensus 204 ~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g-~ 282 (389)
T COG2956 204 KKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTG-A 282 (389)
T ss_pred HHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCC-c
Confidence 99999999999999999999999999999999999999999986 678889999999999999999999999998776 4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 003891 236 QSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEA 271 (788)
Q Consensus 236 ~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~ 271 (788)
.+...++..-....-.+.|..++.+-+...|+.-..
T Consensus 283 ~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf 318 (389)
T COG2956 283 DAELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGF 318 (389)
T ss_pred cHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHH
Confidence 455566677777777889999999999999985433
No 69
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.70 E-value=1.3e-14 Score=147.81 Aligned_cols=287 Identities=17% Similarity=0.108 Sum_probs=244.6
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCH
Q 003891 29 DLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDL 108 (788)
Q Consensus 29 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g~~ 108 (788)
..+.++.....+.-+..++-+-...-|+|...+..+|.+++..|++++|+..|+++..++|......-..|.++...|++
T Consensus 203 a~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~ 282 (564)
T KOG1174|consen 203 ALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGC 282 (564)
T ss_pred HHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCH
Confidence 34555555556666777777777888999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHH
Q 003891 109 ESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIV 188 (788)
Q Consensus 109 ~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 188 (788)
+.-.......+.+.......|+--+. .....+++..|+.+-++++..+|.+..++...|.++...|+.++|+-
T Consensus 283 e~~~~L~~~Lf~~~~~ta~~wfV~~~-------~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~I 355 (564)
T KOG1174|consen 283 EQDSALMDYLFAKVKYTASHWFVHAQ-------LLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVI 355 (564)
T ss_pred hhHHHHHHHHHhhhhcchhhhhhhhh-------hhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHH
Confidence 99888888888877655544443333 33346799999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHH-HHHH-HcCCHHHHHHHHHHHHHhCC
Q 003891 189 FYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLG-VVYT-VQGKMDAAAEMIEKAIAANP 266 (788)
Q Consensus 189 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la-~~~~-~~g~~~eA~~~l~kal~~~p 266 (788)
.|+.+..+.|...+.|..+-.+|...|++.||...-+.+++..|.++.++..+| .++. .-.--++|.+++++++.+.|
T Consensus 356 aFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P 435 (564)
T KOG1174|consen 356 AFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINP 435 (564)
T ss_pred HHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCC
Confidence 999999999999999999999999999999999999999999999999998886 4443 34456899999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhhHHhHHHHhhhccCCCchHHH
Q 003891 267 TYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLF 325 (788)
Q Consensus 267 ~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~a~~~~lla~~~l~~g~~~~~~ 325 (788)
.+..+-..++.++...|.++.++..+++++...|+..- ...++..+......+++.
T Consensus 436 ~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~L---H~~Lgd~~~A~Ne~Q~am 491 (564)
T KOG1174|consen 436 IYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDVNL---HNHLGDIMRAQNEPQKAM 491 (564)
T ss_pred ccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccccHH---HHHHHHHHHHhhhHHHHH
Confidence 99999999999999999999999999999999887532 233444444444444443
No 70
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.69 E-value=3.3e-14 Score=158.45 Aligned_cols=294 Identities=21% Similarity=0.241 Sum_probs=248.4
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC
Q 003891 27 LTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRG 106 (788)
Q Consensus 27 l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g 106 (788)
+...|+.++..|++++|..++.++++++|.++.+|+.||.+|.++|+.+++....-.|-.++|++.+.|..++....++|
T Consensus 142 ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~ 221 (895)
T KOG2076|consen 142 LLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLG 221 (895)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcc
Confidence 55667788888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHcC
Q 003891 107 DLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHY-----ADAMYNLGVAYGEML 181 (788)
Q Consensus 107 ~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~la~~~~~~g 181 (788)
++++|.-+|.+|++.+|.+.......+..+. +.|+...|...|.+++...|.. .+.....+..+...+
T Consensus 222 ~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~-------~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~ 294 (895)
T KOG2076|consen 222 NINQARYCYSRAIQANPSNWELIYERSSLYQ-------KTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHN 294 (895)
T ss_pred cHHHHHHHHHHHHhcCCcchHHHHHHHHHHH-------HhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999998765555555444 4669999999999999999832 123445577888888
Q ss_pred ChHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh----------------------h-------
Q 003891 182 KFDMAIVFYELAFHFN--PHCAEACNNLGVIYKDRDNLDKAVECYQMALS----------------------I------- 230 (788)
Q Consensus 182 ~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~----------------------~------- 230 (788)
+-+.|++.++.++... ....+.++.++.++.....++.|......... .
T Consensus 295 ~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~ 374 (895)
T KOG2076|consen 295 ERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKEL 374 (895)
T ss_pred HHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCC
Confidence 8899999999999842 22345666777888888888877766654433 0
Q ss_pred --------------------------------C---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHH
Q 003891 231 --------------------------------K---PNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPT-YAEAYNN 274 (788)
Q Consensus 231 --------------------------------~---p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~-~~~~~~~ 274 (788)
+ .+..+.+..++..|...|++.+|+.++..+....+. +...|+.
T Consensus 375 s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~ 454 (895)
T KOG2076|consen 375 SYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYK 454 (895)
T ss_pred CccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHH
Confidence 0 123457889999999999999999999999887653 4678999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCChhhHHhHHHHhhhccCCCchHHHHHHH
Q 003891 275 LGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHR 329 (788)
Q Consensus 275 la~~~~~~g~~~eA~~~~~~al~l~p~~~~a~~~~lla~~~l~~g~~~~~~~~~~ 329 (788)
+|.||..+|.+++|+++|++++.+.|++.+++.. ++..+...|+.+++++...
T Consensus 455 ~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~--Lasl~~~~g~~EkalEtL~ 507 (895)
T KOG2076|consen 455 LARCYMELGEYEEAIEFYEKVLILAPDNLDARIT--LASLYQQLGNHEKALETLE 507 (895)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhh--HHHHHHhcCCHHHHHHHHh
Confidence 9999999999999999999999999999999887 6777888999988776543
No 71
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.69 E-value=3.2e-13 Score=162.77 Aligned_cols=291 Identities=15% Similarity=0.106 Sum_probs=181.4
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHH
Q 003891 27 LTDLGTSLKLAGNTQDGIQKYYEALKIDP-HYAPAYYNLGVVYSELMQYDTALGCYEKAALERP-MYAEAYCNMGVIYKN 104 (788)
Q Consensus 27 l~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p-~~~~~~~~la~~~~~ 104 (788)
|..+-..|.+.|++++|.++|+++.+... .+...|..+...|.+.|++++|++.|+++.+..- .+...|..+...|.+
T Consensus 475 ynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k 554 (1060)
T PLN03218 475 YTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQ 554 (1060)
T ss_pred HHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 44455556666777777777777665532 2566666677777777777777777776655321 135566667777777
Q ss_pred CCCHHHHHHHHHHHHhh----CCCcHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Q 003891 105 RGDLESAIACYERCLAV----SPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYN-WHYADAMYNLGVAYGE 179 (788)
Q Consensus 105 ~g~~~~A~~~~~~al~~----~p~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~ 179 (788)
.|++++|.+.|+++... .|+. ..+..+-..|.+.|++++|.+.|+++.+.+ +.+...|..+...|.+
T Consensus 555 ~G~~deA~~lf~eM~~~~~gi~PD~--------vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k 626 (1060)
T PLN03218 555 SGAVDRAFDVLAEMKAETHPIDPDH--------ITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQ 626 (1060)
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCcH--------HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHh
Confidence 77777777777766542 3331 123333344555667777777777776654 3455667777777777
Q ss_pred cCChHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHH
Q 003891 180 MLKFDMAIVFYELAFHF--NPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIK-PNFSQSLNNLGVVYTVQGKMDAAAE 256 (788)
Q Consensus 180 ~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~eA~~ 256 (788)
.|++++|++.|++..+. .| +...|..+...|.+.|++++|.++++++.+.. +.+...+..+...|.+.|++++|.+
T Consensus 627 ~G~~deAl~lf~eM~~~Gv~P-D~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~ 705 (1060)
T PLN03218 627 KGDWDFALSIYDDMKKKGVKP-DEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALE 705 (1060)
T ss_pred cCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHH
Confidence 77777777777776654 33 35566677777777777777777777776653 3345667777777777777777777
Q ss_pred HHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCChhhHHhHHHHhhhccCCCchHHHHHHHH
Q 003891 257 MIEKAIAA--NPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKI--DPDSRNAGQNRLLAMNYINEGHDDKLFEAHRD 330 (788)
Q Consensus 257 ~l~kal~~--~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l--~p~~~~a~~~~lla~~~l~~g~~~~~~~~~~~ 330 (788)
.|++..+. .| +...|..+...|.+.|++++|.+.|++..+. .|+. ..+.. +...+...|+.+++.+.+.+
T Consensus 706 lf~eM~~~g~~P-dvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~-~Ty~s--LL~a~~k~G~le~A~~l~~~ 779 (1060)
T PLN03218 706 LYEDIKSIKLRP-TVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNT-ITYSI--LLVASERKDDADVGLDLLSQ 779 (1060)
T ss_pred HHHHHHHcCCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCH-HHHHH--HHHHHHHCCCHHHHHHHHHH
Confidence 77776543 33 3556777777777777777777777766543 3332 12222 22345556666555554443
No 72
>PLN02949 transferase, transferring glycosyl groups
Probab=99.67 E-value=2.2e-14 Score=159.88 Aligned_cols=177 Identities=14% Similarity=0.111 Sum_probs=143.1
Q ss_pred CeEEEecCCC--CcCCHHHHHHHHHHHhH----cCCcEEEEecCCCC--CHHHHHHHHHHHHHcCCCCCcEEEcCCcCCc
Q 003891 526 FITFGSFNNL--AKITPKVLQVWARILCA----VPNSRLVVKCKPFC--CDSVRHRFLSTLEQLGLESLRVDLLPLILLN 597 (788)
Q Consensus 526 ~~~f~~~~~~--~K~~~~~~~~~~~il~~----~p~~~l~l~~~~~~--~~~~~~~l~~~~~~~gi~~~rv~~~~~~~~~ 597 (788)
..+|.+++++ .|.++..+++|+++.++ .|+.+|+|+|++.. +....+.+++.++++|++ ++|.|.|.++ .
T Consensus 268 ~~~il~vGR~~~~Kg~~llI~A~~~l~~~~~~~~~~~~LvIvG~~~~~~~~~~~~eL~~la~~l~L~-~~V~f~g~v~-~ 345 (463)
T PLN02949 268 PPYIISVAQFRPEKAHALQLEAFALALEKLDADVPRPKLQFVGSCRNKEDEERLQKLKDRAKELGLD-GDVEFHKNVS-Y 345 (463)
T ss_pred CCEEEEEEeeeccCCHHHHHHHHHHHHHhccccCCCcEEEEEeCCCCcccHHHHHHHHHHHHHcCCC-CcEEEeCCCC-H
Confidence 3457777865 89999999999998764 47899999997632 234557889999999998 9999999987 6
Q ss_pred HHHHHhcccccEeecCCCC-CCchhHHHHhhhCCceeecCCCccCccchhH---HHhh--hCCcccccCCHHHHHHHHHH
Q 003891 598 HDHMQAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGVS---LLTK--VGLKHLIAKNEDEYVQLALQ 671 (788)
Q Consensus 598 ~~~~~~~~~~Dv~Ld~~~~-~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~---~l~~--~gl~~~ia~~~~~y~~~a~~ 671 (788)
++....|+.+|+++.|+-+ +.|.+.+|||++|+|||+.. .|+- +... -|..++.+.|++++.+...+
T Consensus 346 ~el~~ll~~a~~~v~~s~~E~FGivvlEAMA~G~PVIa~~-------~gGp~~eIV~~~~~g~tG~l~~~~~~la~ai~~ 418 (463)
T PLN02949 346 RDLVRLLGGAVAGLHSMIDEHFGISVVEYMAAGAVPIAHN-------SAGPKMDIVLDEDGQQTGFLATTVEEYADAILE 418 (463)
T ss_pred HHHHHHHHhCcEEEeCCccCCCChHHHHHHHcCCcEEEeC-------CCCCcceeeecCCCCcccccCCCHHHHHHHHHH
Confidence 8888999999999988854 77999999999999999843 2211 1110 14556777899999999999
Q ss_pred Hhc-CHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHH
Q 003891 672 LAS-DVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRNMWH 714 (788)
Q Consensus 672 l~~-d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~ 714 (788)
+.+ +++.+++|+++.+++.. . |+.+.|+++++++|+.+..
T Consensus 419 ll~~~~~~r~~m~~~ar~~~~-~--FS~e~~~~~~~~~i~~l~~ 459 (463)
T PLN02949 419 VLRMRETERLEIAAAARKRAN-R--FSEQRFNEDFKDAIRPILN 459 (463)
T ss_pred HHhCCHHHHHHHHHHHHHHHH-H--cCHHHHHHHHHHHHHHHHh
Confidence 998 67888999999998863 2 9999999999999998765
No 73
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.66 E-value=2.8e-15 Score=153.26 Aligned_cols=260 Identities=15% Similarity=0.122 Sum_probs=218.9
Q ss_pred HHHHHHHHHHcCCCChhhHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 003891 2 LVASYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCY 81 (788)
Q Consensus 2 Ai~~~~kaL~~~P~~~~a~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 81 (788)
|++.|..|++..|++... |...+-.+...++|++|...+++.++++|.....+...+.++..+++..+|...+
T Consensus 68 al~~yt~Ai~~~pd~a~y-------y~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~a~~~~i~A~~~~ 140 (486)
T KOG0550|consen 68 ALKNYTFAIDMCPDNASY-------YSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHLALSDLIEAEEKL 140 (486)
T ss_pred HHHHHHHHHHhCccchhh-------hchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhhhhHHHHHHHHHh
Confidence 788999999999999777 4445555566689999999999999999999999999999999998888888666
Q ss_pred HHHH------------Hh------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhhh
Q 003891 82 EKAA------------LE------RPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKV 143 (788)
Q Consensus 82 ~kal------------~~------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~~~ 143 (788)
+..- .+ .|....+-...+.|+...|++++|...--..+++++.+.++.+. .|.++
T Consensus 141 ~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n~~al~v-------rg~~~ 213 (486)
T KOG0550|consen 141 KSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDATNAEALYV-------RGLCL 213 (486)
T ss_pred hhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccchhHHHHh-------ccccc
Confidence 5221 01 13334566778899999999999999999999999998765544 44555
Q ss_pred hhcCCHHHHHHHHHHHHHhCCCCHH------------HHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC----HHHHHHH
Q 003891 144 KLEGDINQGVAYYKKALYYNWHYAD------------AMYNLGVAYGEMLKFDMAIVFYELAFHFNPHC----AEACNNL 207 (788)
Q Consensus 144 ~~~g~~~~A~~~~~~al~~~p~~~~------------~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~l 207 (788)
+...+.+.|+..|++++.++|+... .+..-|+-.++.|++.+|.+.|..++.++|++ ...|.+.
T Consensus 214 yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nr 293 (486)
T KOG0550|consen 214 YYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNR 293 (486)
T ss_pred ccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHh
Confidence 5567999999999999999998654 46677888999999999999999999999985 6688999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 003891 208 GVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLG 276 (788)
Q Consensus 208 a~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~la 276 (788)
+.+..++|+..+|+...+.++++++....++...|.++..++++++|.+.|+++++...+ .+....+.
T Consensus 294 a~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s-~e~r~~l~ 361 (486)
T KOG0550|consen 294 ALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKD-CEIRRTLR 361 (486)
T ss_pred HhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-cchHHHHH
Confidence 999999999999999999999999999999999999999999999999999999998766 44444433
No 74
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.66 E-value=1.4e-14 Score=161.82 Aligned_cols=306 Identities=20% Similarity=0.207 Sum_probs=245.2
Q ss_pred HHHHHHHHHHcCCCChhhHHHHHHHHH-----------------------------HHHHHHHHcCChHHHHHHHHHHHH
Q 003891 2 LVASYHKALSADPSYKPAAECLAIVLT-----------------------------DLGTSLKLAGNTQDGIQKYYEALK 52 (788)
Q Consensus 2 Ai~~~~kaL~~~P~~~~a~~~la~~l~-----------------------------~lg~~~~~~g~~~~A~~~~~~al~ 52 (788)
|.++|++|+++++.+.++....+..+. .+|..|...++...|+..|+.++.
T Consensus 511 A~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR 590 (1238)
T KOG1127|consen 511 AKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALR 590 (1238)
T ss_pred HHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhc
Confidence 778999999999999988877776643 256677788899999999999999
Q ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHH
Q 003891 53 IDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNM 132 (788)
Q Consensus 53 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 132 (788)
.+|++..+|..+|.+|...|.|..|++.|.++..++|.+....+..+.+....|+|.+|+..++..+............+
T Consensus 591 ~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gL 670 (1238)
T KOG1127|consen 591 TDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGL 670 (1238)
T ss_pred CCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999998877777777788
Q ss_pred HHHHHHhhhhhhhcCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHH-------------------H----cC
Q 003891 133 AIALTDLGTKVKLEGDINQGVAYYKKALYYN--------WHYADAMYNLGVAYG-------------------E----ML 181 (788)
Q Consensus 133 a~~l~~lg~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~la~~~~-------------------~----~g 181 (788)
+.++..++..+...|-..+|..+++++++.. -++.-.|..+|.+.. . ++
T Consensus 671 aE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~ 750 (1238)
T KOG1127|consen 671 AESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTG 750 (1238)
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcc
Confidence 8888888888888888888888887776541 122222222222211 1 11
Q ss_pred Ch---H---HHHHHHHHHHhcCCCCHHHHHHHHHHHHH--------cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 003891 182 KF---D---MAIVFYELAFHFNPHCAEACNNLGVIYKD--------RDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTV 247 (788)
Q Consensus 182 ~~---~---~A~~~~~~al~~~p~~~~~~~~la~~~~~--------~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~ 247 (788)
.. + -+.+++-..++... .+..|+++|..|+. +.+...|+.++++++++..++...|+.||.+ ..
T Consensus 751 ~l~~~d~l~Lg~~c~~~hlsl~~-~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~ann~~~WnaLGVl-sg 828 (1238)
T KOG1127|consen 751 ALKKNDLLFLGYECGIAHLSLAI-HMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLCANNEGLWNALGVL-SG 828 (1238)
T ss_pred cCcchhHHHHHHHHhhHHHHHhh-ccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHhhccHHHHHHHHHh-hc
Confidence 11 1 12233333333222 25678888887776 2344579999999999999999999999988 66
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhhHHhH
Q 003891 248 QGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNR 309 (788)
Q Consensus 248 ~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~a~~~~ 309 (788)
.|++.-|..+|-+.+...|.....|.++|.++.+..+++-|...|.++..++|.+...|...
T Consensus 829 ~gnva~aQHCfIks~~sep~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLdP~nl~~WlG~ 890 (1238)
T KOG1127|consen 829 IGNVACAQHCFIKSRFSEPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSLDPLNLVQWLGE 890 (1238)
T ss_pred cchhhhhhhhhhhhhhccccchhheeccceeEEecccHHHhhHHHHhhhhcCchhhHHHHHH
Confidence 68999999999999999999999999999999999999999999999999999998877654
No 75
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=99.65 E-value=2.4e-14 Score=157.67 Aligned_cols=173 Identities=17% Similarity=0.171 Sum_probs=140.0
Q ss_pred CCCCeEEEecCCC--CcCCHHHHHHHHHHHhHcC----CcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCC
Q 003891 523 TNGFITFGSFNNL--AKITPKVLQVWARILCAVP----NSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILL 596 (788)
Q Consensus 523 ~~~~~~f~~~~~~--~K~~~~~~~~~~~il~~~p----~~~l~l~~~~~~~~~~~~~l~~~~~~~gi~~~rv~~~~~~~~ 596 (788)
+++.+++++++++ .|..+.+++++.+++++.| +.+|+++|.| +.++.+++.+++.|+. +++.|.|..
T Consensus 191 ~~~~~~i~~vGrl~~~Kg~~~li~a~~~l~~~~~~~~~~~~l~i~G~g----~~~~~~~~~~~~~~~~-~~v~~~g~~-- 263 (374)
T TIGR03088 191 ADESVVVGTVGRLQAVKDQPTLVRAFALLVRQLPEGAERLRLVIVGDG----PARGACEQMVRAAGLA-HLVWLPGER-- 263 (374)
T ss_pred CCCCeEEEEEecCCcccCHHHHHHHHHHHHHhCcccccceEEEEecCC----chHHHHHHHHHHcCCc-ceEEEcCCc--
Confidence 4567788888877 7899999999999998876 6799999977 5567888899999998 899999863
Q ss_pred cHHHHHhcccccEeecCCCC-CCchhHHHHhhhCCceeecCCCccCccchh-HHHhhhCCccccc--CCHHHHHHHHHHH
Q 003891 597 NHDHMQAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGV-SLLTKVGLKHLIA--KNEDEYVQLALQL 672 (788)
Q Consensus 597 ~~~~~~~~~~~Dv~Ld~~~~-~g~~t~~eal~~GvPvvt~~g~~~~~r~~~-~~l~~~gl~~~ia--~~~~~y~~~a~~l 672 (788)
.+....|..+|+++-|+.+ +.|.+++|||+||+|||+ +++++ .=+-.-|..+++. .|.+++++....+
T Consensus 264 -~~~~~~~~~adi~v~pS~~Eg~~~~~lEAma~G~Pvv~-------s~~~g~~e~i~~~~~g~~~~~~d~~~la~~i~~l 335 (374)
T TIGR03088 264 -DDVPALMQALDLFVLPSLAEGISNTILEAMASGLPVIA-------TAVGGNPELVQHGVTGALVPPGDAVALARALQPY 335 (374)
T ss_pred -CCHHHHHHhcCEEEeccccccCchHHHHHHHcCCCEEE-------cCCCCcHHHhcCCCceEEeCCCCHHHHHHHHHHH
Confidence 5677888889999998866 669999999999999998 44431 0011113333333 5899999999999
Q ss_pred hcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHH
Q 003891 673 ASDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRNM 712 (788)
Q Consensus 673 ~~d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ 712 (788)
.+|++.+..++++.++.+.+ .|+.+.+++++++.|+++
T Consensus 336 ~~~~~~~~~~~~~a~~~~~~--~fs~~~~~~~~~~~y~~~ 373 (374)
T TIGR03088 336 VSDPAARRAHGAAGRARAEQ--QFSINAMVAAYAGLYDQL 373 (374)
T ss_pred HhCHHHHHHHHHHHHHHHHH--hCCHHHHHHHHHHHHHHh
Confidence 99999999999998887654 499999999999999875
No 76
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.65 E-value=3.4e-13 Score=145.40 Aligned_cols=289 Identities=18% Similarity=0.203 Sum_probs=218.7
Q ss_pred HHHHHHHHHcCCCChhhHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 003891 3 VASYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYE 82 (788)
Q Consensus 3 i~~~~kaL~~~P~~~~a~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 82 (788)
++..+++|+..|++.+. +...|..+...|+-++|..+...++..++....+|.-+|.++...++|++|+++|+
T Consensus 27 LK~~~~iL~k~~eHges-------lAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~ 99 (700)
T KOG1156|consen 27 LKLIKQILKKFPEHGES-------LAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYR 99 (700)
T ss_pred HHHHHHHHHhCCccchh-------HHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHH
Confidence 46677888899998887 56667777778999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHh
Q 003891 83 KAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYY 162 (788)
Q Consensus 83 kal~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~ 162 (788)
.|+.+.|+|...+..++.+..++++++.....-.+.+++.|.....|...+.+...+| ++..|.+..+...+.
T Consensus 100 nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g-------~y~~A~~il~ef~~t 172 (700)
T KOG1156|consen 100 NALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLG-------EYKMALEILEEFEKT 172 (700)
T ss_pred HHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHh
Confidence 9999999999999999999999999998888888888888888777777766665554 444444433333322
Q ss_pred C---C---------------------------------------CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC
Q 003891 163 N---W---------------------------------------HYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHC 200 (788)
Q Consensus 163 ~---p---------------------------------------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 200 (788)
. | +........+.++..++++++|...|...+..+|++
T Consensus 173 ~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn 252 (700)
T KOG1156|consen 173 QNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPDN 252 (700)
T ss_pred hccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchh
Confidence 1 1 111123456778889999999999999999999998
Q ss_pred HHHHHHHHHHHHHcCCHHHHH-HHHHH----------------------------------HHhh---------------
Q 003891 201 AEACNNLGVIYKDRDNLDKAV-ECYQM----------------------------------ALSI--------------- 230 (788)
Q Consensus 201 ~~~~~~la~~~~~~g~~~eA~-~~~~~----------------------------------al~~--------------- 230 (788)
...+..+-.++..-.+--+++ ..|.. .++.
T Consensus 253 ~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLyk~ 332 (700)
T KOG1156|consen 253 LDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKDLRSLYKD 332 (700)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCchhhhhHHHHhc
Confidence 777666555553111111111 11111 0000
Q ss_pred ------------------------C--------CCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 003891 231 ------------------------K--------PNF--SQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLG 276 (788)
Q Consensus 231 ------------------------~--------p~~--~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~la 276 (788)
+ |.. ...++.++.-+...|+++.|..+++.|+...|+..+.+...|
T Consensus 333 p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~Ka 412 (700)
T KOG1156|consen 333 PEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKA 412 (700)
T ss_pred hhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHH
Confidence 0 111 124566778888999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCChhh
Q 003891 277 VLYRDAGSISLAIDAYEQCLKIDPDSRNA 305 (788)
Q Consensus 277 ~~~~~~g~~~eA~~~~~~al~l~p~~~~a 305 (788)
.++...|++++|..+++.+.++|-.|.-.
T Consensus 413 RI~kH~G~l~eAa~~l~ea~elD~aDR~I 441 (700)
T KOG1156|consen 413 RIFKHAGLLDEAAAWLDEAQELDTADRAI 441 (700)
T ss_pred HHHHhcCChHHHHHHHHHHHhccchhHHH
Confidence 99999999999999999999997765443
No 77
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.65 E-value=1.4e-12 Score=157.29 Aligned_cols=293 Identities=13% Similarity=0.084 Sum_probs=238.1
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHH
Q 003891 27 LTDLGTSLKLAGNTQDGIQKYYEALKIDP-HYAPAYYNLGVVYSELMQYDTALGCYEKAALERPM-YAEAYCNMGVIYKN 104 (788)
Q Consensus 27 l~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~-~~~~~~~la~~~~~ 104 (788)
|..+-..+...|++++|.+.|+++.+... .+...|..+...|.+.|+.++|.+.|+++.+.... +...|..+...|.+
T Consensus 440 yn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k 519 (1060)
T PLN03218 440 FNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCAR 519 (1060)
T ss_pred HHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 45555667788999999999999887753 35788899999999999999999999999876532 68899999999999
Q ss_pred CCCHHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHH
Q 003891 105 RGDLESAIACYERCLAV--SPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYY----NWHYADAMYNLGVAYG 178 (788)
Q Consensus 105 ~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~la~~~~ 178 (788)
.|++++|++.|+++.+. .|+. .+|..+-..+.+.|++++|.+.+++.... .| +...+..+...|.
T Consensus 520 ~G~~eeAl~lf~~M~~~Gv~PD~--------vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~P-D~vTynaLI~ay~ 590 (1060)
T PLN03218 520 AGQVAKAFGAYGIMRSKNVKPDR--------VVFNALISACGQSGAVDRAFDVLAEMKAETHPIDP-DHITVGALMKACA 590 (1060)
T ss_pred CcCHHHHHHHHHHHHHcCCCCCH--------HHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCC-cHHHHHHHHHHHH
Confidence 99999999999998765 3442 24445555666678999999999999763 33 4567888889999
Q ss_pred HcCChHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHH
Q 003891 179 EMLKFDMAIVFYELAFHFN-PHCAEACNNLGVIYKDRDNLDKAVECYQMALSIK-PNFSQSLNNLGVVYTVQGKMDAAAE 256 (788)
Q Consensus 179 ~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~eA~~ 256 (788)
+.|++++|.+.|++..+.+ +.+...|..+...|.+.|++++|+++|++..+.. ..+...+..+...|.+.|++++|.+
T Consensus 591 k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~ 670 (1060)
T PLN03218 591 NAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFE 670 (1060)
T ss_pred HCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHH
Confidence 9999999999999998875 4567899999999999999999999999998762 2246788899999999999999999
Q ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCChhhHHhHHHHhhhccCCCchHHHHHHHHH
Q 003891 257 MIEKAIAAN-PTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKI--DPDSRNAGQNRLLAMNYINEGHDDKLFEAHRDW 331 (788)
Q Consensus 257 ~l~kal~~~-p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l--~p~~~~a~~~~lla~~~l~~g~~~~~~~~~~~~ 331 (788)
+++++.+.. +.+...+..+...|.+.|++++|.+.|++..+. .|+. ..++ .+...|...|+.+++.+..++.
T Consensus 671 l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~Pdv--vtyN-~LI~gy~k~G~~eeAlelf~eM 745 (1060)
T PLN03218 671 ILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTV--STMN-ALITALCEGNQLPKALEVLSEM 745 (1060)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCH--HHHH-HHHHHHHHCCCHHHHHHHHHHH
Confidence 999998874 345788999999999999999999999988664 4432 2223 3555677888888887776654
No 78
>cd03796 GT1_PIG-A_like This family is most closely related to the GT1 family of glycosyltransferases. Phosphatidylinositol glycan-class A (PIG-A), an X-linked gene in humans, is necessary for the synthesis of N-acetylglucosaminyl-phosphatidylinositol, a very early intermediate in glycosyl phosphatidylinositol (GPI)-anchor biosynthesis. The GPI-anchor is an important cellular structure that facilitates the attachment of many proteins to cell surfaces. Somatic mutations in PIG-A have been associated with Paroxysmal Nocturnal Hemoglobinuria (PNH), an acquired hematological disorder.
Probab=99.63 E-value=2e-14 Score=159.40 Aligned_cols=178 Identities=18% Similarity=0.112 Sum_probs=143.4
Q ss_pred CCCCeEEEecCCC--CcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHH
Q 003891 523 TNGFITFGSFNNL--AKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDH 600 (788)
Q Consensus 523 ~~~~~~f~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~~~~l~~~~~~~gi~~~rv~~~~~~~~~~~~ 600 (788)
+++.+++++++++ .|....+++++..+.+..|+.+|+++|.+ +..+.+++.+++.|++ ++|.|.|.++ .++.
T Consensus 190 ~~~~~~i~~~grl~~~Kg~~~li~a~~~l~~~~~~~~l~i~G~g----~~~~~l~~~~~~~~l~-~~v~~~G~~~-~~~~ 263 (398)
T cd03796 190 DNDKITIVVISRLVYRKGIDLLVGIIPEICKKHPNVRFIIGGDG----PKRILLEEMREKYNLQ-DRVELLGAVP-HERV 263 (398)
T ss_pred CCCceEEEEEeccchhcCHHHHHHHHHHHHhhCCCEEEEEEeCC----chHHHHHHHHHHhCCC-CeEEEeCCCC-HHHH
Confidence 3566788888876 89999999999999989999999999977 5677888999999998 8999999987 6899
Q ss_pred HHhcccccEeecCCCC-CCchhHHHHhhhCCceeecCCCccCccchhHHHhhhCCcccccCCHHHHHHHHHHHhcCHHHH
Q 003891 601 MQAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIAKNEDEYVQLALQLASDVTAL 679 (788)
Q Consensus 601 ~~~~~~~Dv~Ld~~~~-~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l~~~gl~~~ia~~~~~y~~~a~~l~~d~~~~ 679 (788)
...|..+|+++-|+.+ +.|.+++|||+||+|||+-.......- +.. |-.-++..|.+++++...++..+....
T Consensus 264 ~~~l~~ad~~v~pS~~E~~g~~~~EAma~G~PVI~s~~gg~~e~-----i~~-~~~~~~~~~~~~l~~~l~~~l~~~~~~ 337 (398)
T cd03796 264 RDVLVQGHIFLNTSLTEAFCIAIVEAASCGLLVVSTRVGGIPEV-----LPP-DMILLAEPDVESIVRKLEEAISILRTG 337 (398)
T ss_pred HHHHHhCCEEEeCChhhccCHHHHHHHHcCCCEEECCCCCchhh-----eeC-CceeecCCCHHHHHHHHHHHHhChhhh
Confidence 9999999999998866 668899999999999998432222211 111 212234568999999999999987766
Q ss_pred HHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHH
Q 003891 680 ANLRMSLRDLMSKSPVCDGQNFALGLESTYRNMWH 714 (788)
Q Consensus 680 ~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~ 714 (788)
..++++.+++..+ .|+++..++++.+.|+++..
T Consensus 338 ~~~~~~~~~~~~~--~fs~~~~~~~~~~~y~~l~~ 370 (398)
T cd03796 338 KHDPWSFHNRVKK--MYSWEDVAKRTEKVYDRILQ 370 (398)
T ss_pred hhHHHHHHHHHHh--hCCHHHHHHHHHHHHHHHhc
Confidence 6677777776654 49999999999999998754
No 79
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.63 E-value=4.8e-13 Score=146.95 Aligned_cols=312 Identities=18% Similarity=0.146 Sum_probs=212.8
Q ss_pred HHHHHHHHHHcC--CCChhhHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC-----CCHHHHHHHHHHHHHcC--
Q 003891 2 LVASYHKALSAD--PSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDP-----HYAPAYYNLGVVYSELM-- 72 (788)
Q Consensus 2 Ai~~~~kaL~~~--P~~~~a~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p-----~~~~~~~~lg~~~~~~g-- 72 (788)
|+...++.+... |++.... ++.-..+....+.+++++.+..+++.... -.+.++..+|.+|..+-
T Consensus 376 Av~ll~~~~~~~~~ps~~s~~------Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~ 449 (799)
T KOG4162|consen 376 AVNLLRESLKKSEQPSDISVL------LMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQ 449 (799)
T ss_pred HHHHHHhhcccccCCCcchHH------HHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhc
Confidence 344555555555 4444332 22222334455667777777777766321 12456666666664321
Q ss_pred ---------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCC-cHHHHHHHHHHHHHhhhh
Q 003891 73 ---------QYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPN-FEIAKNNMAIALTDLGTK 142 (788)
Q Consensus 73 ---------~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~l~~lg~~ 142 (788)
...++++.++++++.+|.++.+.++++.-|..+++.+.|..+.++++++++. +...|..++ .+
T Consensus 450 a~~~seR~~~h~kslqale~av~~d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLA-------Lv 522 (799)
T KOG4162|consen 450 ANLKSERDALHKKSLQALEEAVQFDPTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLA-------LV 522 (799)
T ss_pred CCChHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHH-------HH
Confidence 2456777777777777777777777777777777777777777777777443 333333333 33
Q ss_pred hhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCh---------------------------------------
Q 003891 143 VKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKF--------------------------------------- 183 (788)
Q Consensus 143 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~--------------------------------------- 183 (788)
....+++.+|+...+.+++..++|.........+-...++.
T Consensus 523 lSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la 602 (799)
T KOG4162|consen 523 LSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLA 602 (799)
T ss_pred HhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccC
Confidence 33456777777777777766665433222222222222222
Q ss_pred ----HHHHHHHHHHHhc---------------------CCC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 003891 184 ----DMAIVFYELAFHF---------------------NPH-----CAEACNNLGVIYKDRDNLDKAVECYQMALSIKPN 233 (788)
Q Consensus 184 ----~~A~~~~~~al~~---------------------~p~-----~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~ 233 (788)
.+|++.++++... .|+ ....|...+..+...++.++|..++.++-+++|.
T Consensus 603 ~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l 682 (799)
T KOG4162|consen 603 LSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPL 682 (799)
T ss_pred cccccccchhhHHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchh
Confidence 2333333332211 011 1245667888899999999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH--HHHHHHhhCCCChhhHHhHHH
Q 003891 234 FSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAID--AYEQCLKIDPDSRNAGQNRLL 311 (788)
Q Consensus 234 ~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~~eA~~--~~~~al~l~p~~~~a~~~~ll 311 (788)
.+..|+..|.++...|+.++|.+.|..++.++|++..+...+|.++.+.|+..-|.. .+..+++++|.++++|++ +
T Consensus 683 ~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~--L 760 (799)
T KOG4162|consen 683 SASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYY--L 760 (799)
T ss_pred hHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHH--H
Confidence 999999999999999999999999999999999999999999999999999888888 999999999999999987 6
Q ss_pred HhhhccCCCchHHHHHH
Q 003891 312 AMNYINEGHDDKLFEAH 328 (788)
Q Consensus 312 a~~~l~~g~~~~~~~~~ 328 (788)
+..+...|+..++.+.+
T Consensus 761 G~v~k~~Gd~~~Aaecf 777 (799)
T KOG4162|consen 761 GEVFKKLGDSKQAAECF 777 (799)
T ss_pred HHHHHHccchHHHHHHH
Confidence 77777888887665543
No 80
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=99.63 E-value=5.6e-15 Score=150.28 Aligned_cols=271 Identities=25% Similarity=0.307 Sum_probs=215.0
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCCHHHHH
Q 003891 27 LTDLGTSLKLAGNTQDGIQKYYEALKIDPHY----APAYYNLGVVYSELMQYDTALGCYEKAALE------RPMYAEAYC 96 (788)
Q Consensus 27 l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~lg~~~~~~g~~~~A~~~~~kal~~------~p~~~~~~~ 96 (788)
+..-|.-+.+.|++...+..|+.+++...++ ..+|..+|+.|+.+++|++|+++-..=+.+ .-..+...-
T Consensus 20 LalEGERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssg 99 (639)
T KOG1130|consen 20 LALEGERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSG 99 (639)
T ss_pred HHHHHHHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccc
Confidence 3456788899999999999999999987765 457889999999999999999986543322 223456778
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhcCC--------------------HHHHHHHH
Q 003891 97 NMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGD--------------------INQGVAYY 156 (788)
Q Consensus 97 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~g~--------------------~~~A~~~~ 156 (788)
+||+++..+|.|++|+.++.+-+.+..... .....+.+++++|.+|...|+ ++.|.++|
T Consensus 100 NLGNtlKv~G~fdeA~~cc~rhLd~areLg-Drv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy 178 (639)
T KOG1130|consen 100 NLGNTLKVKGAFDEALTCCFRHLDFARELG-DRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFY 178 (639)
T ss_pred cccchhhhhcccchHHHHHHHHhHHHHHHh-HHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHH
Confidence 999999999999999999999887755433 223346677777777776543 45667777
Q ss_pred HHHHHhCCCCH------HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC------CHHHHHHHHHHHHHcCCHHHHHHHH
Q 003891 157 KKALYYNWHYA------DAMYNLGVAYGEMLKFDMAIVFYELAFHFNPH------CAEACNNLGVIYKDRDNLDKAVECY 224 (788)
Q Consensus 157 ~~al~~~p~~~------~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~g~~~eA~~~~ 224 (788)
..-+++..... .++-++|+.|+-+|+|++|+..-+.-+.+... ...++.++|.++.-+|+++.|+++|
T Consensus 179 ~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehY 258 (639)
T KOG1130|consen 179 MENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHY 258 (639)
T ss_pred HHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHH
Confidence 76666544322 36778999999999999999998877776433 2468899999999999999999999
Q ss_pred HHHHhhC------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHcCCHHHHHHHH
Q 003891 225 QMALSIK------PNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANP------TYAEAYNNLGVLYRDAGSISLAIDAY 292 (788)
Q Consensus 225 ~~al~~~------p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p------~~~~~~~~la~~~~~~g~~~eA~~~~ 292 (788)
++.+.+. ...+...+.||..|.-..++++|+.++++-+.+.. ....+++.||..+-..|..++|+.+.
T Consensus 259 K~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fa 338 (639)
T KOG1130|consen 259 KLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFA 338 (639)
T ss_pred HHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 9987652 22356789999999999999999999999877632 23578899999999999999999998
Q ss_pred HHHHhh
Q 003891 293 EQCLKI 298 (788)
Q Consensus 293 ~~al~l 298 (788)
++.+++
T Consensus 339 e~hl~~ 344 (639)
T KOG1130|consen 339 ELHLRS 344 (639)
T ss_pred HHHHHH
Confidence 888765
No 81
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.62 E-value=5e-13 Score=158.89 Aligned_cols=289 Identities=14% Similarity=0.064 Sum_probs=234.1
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHC
Q 003891 27 LTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALER-PMYAEAYCNMGVIYKNR 105 (788)
Q Consensus 27 l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~-p~~~~~~~~la~~~~~~ 105 (788)
+..+...|.+.|++++|.+.|++. .+.+..+|..+...|.+.|++++|++.|+++.+.. .-+...+..+...+.+.
T Consensus 262 ~n~Li~~y~k~g~~~~A~~vf~~m---~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~ 338 (697)
T PLN03081 262 SCALIDMYSKCGDIEDARCVFDGM---PEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRL 338 (697)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHhC---CCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Confidence 345667888999999999999876 34578899999999999999999999999987643 22567888999999999
Q ss_pred CCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHH
Q 003891 106 GDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDM 185 (788)
Q Consensus 106 g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 185 (788)
|++++|.+.+..+++...... ..++..+...|.+.|++++|.+.|++..+ .+...|..+...|.+.|+.++
T Consensus 339 g~~~~a~~i~~~m~~~g~~~d------~~~~~~Li~~y~k~G~~~~A~~vf~~m~~---~d~~t~n~lI~~y~~~G~~~~ 409 (697)
T PLN03081 339 ALLEHAKQAHAGLIRTGFPLD------IVANTALVDLYSKWGRMEDARNVFDRMPR---KNLISWNALIAGYGNHGRGTK 409 (697)
T ss_pred cchHHHHHHHHHHHHhCCCCC------eeehHHHHHHHHHCCCHHHHHHHHHhCCC---CCeeeHHHHHHHHHHcCCHHH
Confidence 999999999999988753211 22344566667778899999999998754 356789999999999999999
Q ss_pred HHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003891 186 AIVFYELAFHFN-PHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKP--NFSQSLNNLGVVYTVQGKMDAAAEMIEKAI 262 (788)
Q Consensus 186 A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p--~~~~~~~~la~~~~~~g~~~eA~~~l~kal 262 (788)
|++.|++..+.. .-+...+..+...+.+.|..++|.++|++..+... .+...|..+...|.+.|++++|.+.+++.
T Consensus 410 A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~- 488 (697)
T PLN03081 410 AVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA- 488 (697)
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC-
Confidence 999999988753 22467788888999999999999999999986432 33457888999999999999999998875
Q ss_pred HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhhHHhHHHHhhhccCCCchHHHHHHHHH
Q 003891 263 AANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHRDW 331 (788)
Q Consensus 263 ~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~a~~~~lla~~~l~~g~~~~~~~~~~~~ 331 (788)
...| +...|..+...+...|+++.|...+++.+++.|++...+. .+...|...|+.+++.+..+..
T Consensus 489 ~~~p-~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~--~L~~~y~~~G~~~~A~~v~~~m 554 (697)
T PLN03081 489 PFKP-TVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYV--VLLNLYNSSGRQAEAAKVVETL 554 (697)
T ss_pred CCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchH--HHHHHHHhCCCHHHHHHHHHHH
Confidence 2333 4677999999999999999999999999999998766543 4566788889888877665543
No 82
>PRK15427 colanic acid biosynthesis glycosyltransferase WcaL; Provisional
Probab=99.62 E-value=1.1e-14 Score=161.05 Aligned_cols=173 Identities=15% Similarity=0.085 Sum_probs=144.9
Q ss_pred CCCeEEEecCCC--CcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHHH
Q 003891 524 NGFITFGSFNNL--AKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHM 601 (788)
Q Consensus 524 ~~~~~f~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~~~~l~~~~~~~gi~~~rv~~~~~~~~~~~~~ 601 (788)
++.+++++++++ .|..+.+++++.++.++.|+.+|+++|.| +.++.+++.++++|++ ++|.|.|.++ .++..
T Consensus 220 ~~~~~il~vGrl~~~Kg~~~ll~a~~~l~~~~~~~~l~ivG~G----~~~~~l~~~~~~~~l~-~~V~~~G~~~-~~el~ 293 (406)
T PRK15427 220 ATPLEIISVARLTEKKGLHVAIEACRQLKEQGVAFRYRILGIG----PWERRLRTLIEQYQLE-DVVEMPGFKP-SHEVK 293 (406)
T ss_pred CCCeEEEEEeCcchhcCHHHHHHHHHHHHhhCCCEEEEEEECc----hhHHHHHHHHHHcCCC-CeEEEeCCCC-HHHHH
Confidence 345678888877 79999999999999888899999999987 6788999999999998 8999999987 68899
Q ss_pred HhcccccEeecCCC-------CCCchhHHHHhhhCCceeecCCCccCccchh-HHHhhhCCccccc--CCHHHHHHHHHH
Q 003891 602 QAYSLMDISLDTFP-------YAGTTTTCESLYMGVPCVTMAGSVHAHNVGV-SLLTKVGLKHLIA--KNEDEYVQLALQ 671 (788)
Q Consensus 602 ~~~~~~Dv~Ld~~~-------~~g~~t~~eal~~GvPvvt~~g~~~~~r~~~-~~l~~~gl~~~ia--~~~~~y~~~a~~ 671 (788)
..|+.+|+++-|+- .+.+.+++|||++|+|||+ +++++ .=+-.-|..+++. .|.+++++...+
T Consensus 294 ~~l~~aDv~v~pS~~~~~g~~Eg~p~~llEAma~G~PVI~-------t~~~g~~E~v~~~~~G~lv~~~d~~~la~ai~~ 366 (406)
T PRK15427 294 AMLDDADVFLLPSVTGADGDMEGIPVALMEAMAVGIPVVS-------TLHSGIPELVEADKSGWLVPENDAQALAQRLAA 366 (406)
T ss_pred HHHHhCCEEEECCccCCCCCccCccHHHHHHHhCCCCEEE-------eCCCCchhhhcCCCceEEeCCCCHHHHHHHHHH
Confidence 99999999999884 4568899999999999998 44441 0011113344443 589999999999
Q ss_pred Hhc-CHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHH
Q 003891 672 LAS-DVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRN 711 (788)
Q Consensus 672 l~~-d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~~ 711 (788)
|.+ |++.+++|+++.|+++.+. |+.+..++++++.|++
T Consensus 367 l~~~d~~~~~~~~~~ar~~v~~~--f~~~~~~~~l~~~~~~ 405 (406)
T PRK15427 367 FSQLDTDELAPVVKRAREKVETD--FNQQVINRELASLLQA 405 (406)
T ss_pred HHhCCHHHHHHHHHHHHHHHHHh--cCHHHHHHHHHHHHhh
Confidence 999 9999999999999888655 9999999999999976
No 83
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.61 E-value=2e-12 Score=141.21 Aligned_cols=307 Identities=16% Similarity=0.075 Sum_probs=220.5
Q ss_pred CCCChhhHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 003891 13 DPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHY---APAYYNLGVVYSELMQYDTALGCYEKAALERP 89 (788)
Q Consensus 13 ~P~~~~a~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p 89 (788)
+|+...+ +..+|..+...|+.+++.+.+.++.+..+.+ .+..+..+..+...|++++|...++++++.+|
T Consensus 2 dp~~~~a-------~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P 74 (355)
T cd05804 2 DPDFALG-------HAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYP 74 (355)
T ss_pred CCccHHH-------HHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC
Confidence 6777766 5666667777789999999999988887754 55677889999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh----hCCCcHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHhCCC
Q 003891 90 MYAEAYCNMGVIYKNRGDLESAIACYERCLA----VSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWH 165 (788)
Q Consensus 90 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~----~~p~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 165 (788)
++..++.. +..+...|++..+.....+++. ..|... ..+..++.++..+|++++|+..++++++.+|+
T Consensus 75 ~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-------~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~ 146 (355)
T cd05804 75 RDLLALKL-HLGAFGLGDFSGMRDHVARVLPLWAPENPDYW-------YLLGMLAFGLEEAGQYDRAEEAARRALELNPD 146 (355)
T ss_pred CcHHHHHH-hHHHHHhcccccCchhHHHHHhccCcCCCCcH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 99887775 6566655555444444444443 334332 33445566677788999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC--CHHHHH
Q 003891 166 YADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCA----EACNNLGVIYKDRDNLDKAVECYQMALSIKPN--FSQSLN 239 (788)
Q Consensus 166 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~--~~~~~~ 239 (788)
+..++..+|.++...|++++|+.++++++...|... ..+..++.++..+|++++|+..|++++...|. ......
T Consensus 147 ~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~ 226 (355)
T cd05804 147 DAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLL 226 (355)
T ss_pred CcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHh
Confidence 999999999999999999999999999999876432 35668999999999999999999999876662 222111
Q ss_pred ---HHHHHHHHcCCHHHHHHH--H-HHHHHhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC---C----hh
Q 003891 240 ---NLGVVYTVQGKMDAAAEM--I-EKAIAANPT--YAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPD---S----RN 304 (788)
Q Consensus 240 ---~la~~~~~~g~~~eA~~~--l-~kal~~~p~--~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~---~----~~ 304 (788)
.+...+...|....+..+ + .......+. ........+.++...|+.++|...++......-. . ..
T Consensus 227 ~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~ 306 (355)
T cd05804 227 DAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARD 306 (355)
T ss_pred hHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHh
Confidence 222333444543333332 1 111111121 2233346888888999999999999887664322 1 12
Q ss_pred hHHhHHHHhhhccCCCchHHHHHHHHHHHH
Q 003891 305 AGQNRLLAMNYINEGHDDKLFEAHRDWGKR 334 (788)
Q Consensus 305 a~~~~lla~~~l~~g~~~~~~~~~~~~~~~ 334 (788)
+....+.+..+...|+.+++.+...+....
T Consensus 307 ~~~~~l~A~~~~~~g~~~~A~~~L~~al~~ 336 (355)
T cd05804 307 VGLPLAEALYAFAEGNYATALELLGPVRDD 336 (355)
T ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 344456777888899988887776654443
No 84
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=99.60 E-value=2.7e-14 Score=161.53 Aligned_cols=342 Identities=13% Similarity=0.082 Sum_probs=202.0
Q ss_pred CCCeeEeeccC-CcccChh--HHhhhhhhcccCCCceEEEEEeccccCChhhHHHHH-HHhh-hCCeEEEc---cCCCHH
Q 003891 352 ERPLVIGYVSP-DYFTHSV--SYFIEAPLVYHDYQNYKVVVYSAVVKADAKTIRFRE-KVMK-KGGIWRDI---YGIDEK 423 (788)
Q Consensus 352 ~~~lriGyvS~-df~~H~v--~~~~~~~l~~~dr~~fev~~Y~~~~~~D~~t~~~r~-~~~~-~~~~~~~~---~~~~~~ 423 (788)
.++.||..+.. .+..|.- ...+..+.+.+.+.+.||++.+...........++- .+.. ....+..+ .... .
T Consensus 56 ~~~mrI~~~~~~~~~~~~gG~~~~~~~l~~~L~~~G~eV~vlt~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~-~ 134 (465)
T PLN02871 56 SRPRRIALFVEPSPFSYVSGYKNRFQNFIRYLREMGDEVLVVTTDEGVPQEFHGAKVIGSWSFPCPFYQKVPLSLALS-P 134 (465)
T ss_pred CCCceEEEEECCcCCcccccHHHHHHHHHHHHHHCCCeEEEEecCCCCCccccCceeeccCCcCCccCCCceeeccCC-H
Confidence 56788887743 2233332 344556666777778899988765432111000000 0000 00000000 0111 2
Q ss_pred HHHHHHHhCCCcEEEeCCCCCCCCcccccc--cCCCCeEEecccCCCCC----CC---------------CCccEEEecC
Q 003891 424 KVAAMVREDKIDILVELTGHTANNKLGMMA--CQPAPVQVTWIGYPNTT----GL---------------PTIDYRITDS 482 (788)
Q Consensus 424 ~~a~~i~~d~idilvdl~g~t~~~~~~~~a--~r~Apvq~~~~g~~~tt----g~---------------~~~Dy~i~d~ 482 (788)
.+.+.|+..++||+.--+.+.. .-..+++ ..-.|+=+++-++.... +. ...|.+++..
T Consensus 135 ~l~~~i~~~kpDiIh~~~~~~~-~~~~~~~ak~~~ip~V~~~h~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ad~ii~~S 213 (465)
T PLN02871 135 RIISEVARFKPDLIHASSPGIM-VFGALFYAKLLCVPLVMSYHTHVPVYIPRYTFSWLVKPMWDIIRFLHRAADLTLVTS 213 (465)
T ss_pred HHHHHHHhCCCCEEEECCCchh-HHHHHHHHHHhCCCEEEEEecCchhhhhcccchhhHHHHHHHHHHHHhhCCEEEECC
Confidence 6788899999999853221110 1111111 22346655554432110 00 1235555432
Q ss_pred CCCCcCccCCC---ccceEEcCCCcc--ccCCCCCCCCCCC-CCCCCCCCeEEEecCCC--CcCCHHHHHHHHHHHhHcC
Q 003891 483 LADPPETKQKH---VEELIRLPECFL--CYTPSPEAGPVCP-TPALTNGFITFGSFNNL--AKITPKVLQVWARILCAVP 554 (788)
Q Consensus 483 ~~~p~~~~~~~---~e~l~~lp~~~~--~~~~~~~~~~~~~-~~~~~~~~~~f~~~~~~--~K~~~~~~~~~~~il~~~p 554 (788)
-..-......+ .+++..+|+..- .|.|.......+. ......+.+++++++++ .|..+.+ .++++..|
T Consensus 214 ~~~~~~l~~~~~~~~~kv~vi~nGvd~~~f~p~~~~~~~~~~~~~~~~~~~~i~~vGrl~~~K~~~~l----i~a~~~~~ 289 (465)
T PLN02871 214 PALGKELEAAGVTAANRIRVWNKGVDSESFHPRFRSEEMRARLSGGEPEKPLIVYVGRLGAEKNLDFL----KRVMERLP 289 (465)
T ss_pred HHHHHHHHHcCCCCcCeEEEeCCccCccccCCccccHHHHHHhcCCCCCCeEEEEeCCCchhhhHHHH----HHHHHhCC
Confidence 11111111222 456666665321 1222211110000 11122345677888877 6665444 45566779
Q ss_pred CcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHHHHhcccccEeecCCCC-CCchhHHHHhhhCCcee
Q 003891 555 NSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPY-AGTTTTCESLYMGVPCV 633 (788)
Q Consensus 555 ~~~l~l~~~~~~~~~~~~~l~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~~Dv~Ld~~~~-~g~~t~~eal~~GvPvv 633 (788)
+.+|+++|+| +.++.+++.++. .+|.|+|.++ .++....|+.+||++-|+.+ +.|.+++|||++|+|||
T Consensus 290 ~~~l~ivG~G----~~~~~l~~~~~~-----~~V~f~G~v~-~~ev~~~~~~aDv~V~pS~~E~~g~~vlEAmA~G~PVI 359 (465)
T PLN02871 290 GARLAFVGDG----PYREELEKMFAG-----TPTVFTGMLQ-GDELSQAYASGDVFVMPSESETLGFVVLEAMASGVPVV 359 (465)
T ss_pred CcEEEEEeCC----hHHHHHHHHhcc-----CCeEEeccCC-HHHHHHHHHHCCEEEECCcccccCcHHHHHHHcCCCEE
Confidence 9999999987 566666665542 4799999987 68899999999999999876 66889999999999999
Q ss_pred ecCCCccCccchh--HHHhh--hCCccccc--CCHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHH
Q 003891 634 TMAGSVHAHNVGV--SLLTK--VGLKHLIA--KNEDEYVQLALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALGLES 707 (788)
Q Consensus 634 t~~g~~~~~r~~~--~~l~~--~gl~~~ia--~~~~~y~~~a~~l~~d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~ 707 (788)
+ +++++ .++.. .|-.+++. .|++++.+...++.+|++.++.|+++.++... -|+++..++++++
T Consensus 360 ~-------s~~gg~~eiv~~~~~~~~G~lv~~~d~~~la~~i~~ll~~~~~~~~~~~~a~~~~~---~fsw~~~a~~l~~ 429 (465)
T PLN02871 360 A-------ARAGGIPDIIPPDQEGKTGFLYTPGDVDDCVEKLETLLADPELRERMGAAAREEVE---KWDWRAATRKLRN 429 (465)
T ss_pred E-------cCCCCcHhhhhcCCCCCceEEeCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHH---hCCHHHHHHHHHH
Confidence 7 33331 12221 14445553 58999999999999999999999999998763 3899999999997
Q ss_pred -HHHHHHHHHhcC
Q 003891 708 -TYRNMWHRYCKG 719 (788)
Q Consensus 708 -~~~~~~~~~~~~ 719 (788)
.|++++.+|.+.
T Consensus 430 ~~Y~~~~~~~~~~ 442 (465)
T PLN02871 430 EQYSAAIWFWRKK 442 (465)
T ss_pred HHHHHHHHHHHHH
Confidence 799999988764
No 85
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=99.60 E-value=1.7e-14 Score=146.80 Aligned_cols=281 Identities=23% Similarity=0.281 Sum_probs=221.1
Q ss_pred HHHHHHHHHcCCCChhhHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHcCCHHH
Q 003891 3 VASYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKI------DPHYAPAYYNLGVVYSELMQYDT 76 (788)
Q Consensus 3 i~~~~kaL~~~P~~~~a~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~lg~~~~~~g~~~~ 76 (788)
+.+|+.|++.-.++... +..+|.++|.+|+..++|++|+++-..-+.+ .-..+.+--++|+.+..+|.|++
T Consensus 37 v~ff~aA~qvGTeDl~t---LSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNtlKv~G~fde 113 (639)
T KOG1130|consen 37 VDFFKAALQVGTEDLST---LSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNTLKVKGAFDE 113 (639)
T ss_pred HHHHHHHHHhcchHHHH---HHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccchhhhhcccch
Confidence 57899999988776554 6778999999999999999999986543332 22345667889999999999999
Q ss_pred HHHHHHHHHHhCCC------CHHHHHHHHHHHHHCCC--------------------HHHHHHHHHHHHhhCCCcHHHHH
Q 003891 77 ALGCYEKAALERPM------YAEAYCNMGVIYKNRGD--------------------LESAIACYERCLAVSPNFEIAKN 130 (788)
Q Consensus 77 A~~~~~kal~~~p~------~~~~~~~la~~~~~~g~--------------------~~~A~~~~~~al~~~p~~~~~~~ 130 (788)
|+.+..+-+..... ...+++++|.+|...|+ ++.|.++|+.-+++..+.. ...
T Consensus 114 A~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~~~lg-Dr~ 192 (639)
T KOG1130|consen 114 ALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELSEKLG-DRL 192 (639)
T ss_pred HHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHHHHhh-hHH
Confidence 99999888765322 46799999999998774 4456666666666654443 234
Q ss_pred HHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHcCChHHHHHHHHHHHhcC----C--
Q 003891 131 NMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYA------DAMYNLGVAYGEMLKFDMAIVFYELAFHFN----P-- 198 (788)
Q Consensus 131 ~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~------~~~~~la~~~~~~g~~~~A~~~~~~al~~~----p-- 198 (788)
..+.++-++|+.|+-.|+|++|+..-+.-+.+..+.. .++.++|+++.-+|+++.|+++|++.+.+. .
T Consensus 193 aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~ 272 (639)
T KOG1130|consen 193 AQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRT 272 (639)
T ss_pred hhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchh
Confidence 5578899999999999999999999988887755432 478899999999999999999999987652 1
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CC
Q 003891 199 HCAEACNNLGVIYKDRDNLDKAVECYQMALSIKP------NFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAAN-----PT 267 (788)
Q Consensus 199 ~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p------~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~-----p~ 267 (788)
..+...+.+|..|.-..++++|+.++++-+.+.. ....+++.||..+...|..++|+.+.++.++.. +.
T Consensus 273 vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~s~ev~D~s 352 (639)
T KOG1130|consen 273 VEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRSSLEVNDTS 352 (639)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCcc
Confidence 2366789999999999999999999999887643 335589999999999999999999998887752 22
Q ss_pred -CHHHHHHHHHHHHHcCCHHH
Q 003891 268 -YAEAYNNLGVLYRDAGSISL 287 (788)
Q Consensus 268 -~~~~~~~la~~~~~~g~~~e 287 (788)
...+..++...-...|..+.
T Consensus 353 gelTar~Nlsdl~~~lG~~ds 373 (639)
T KOG1130|consen 353 GELTARDNLSDLILELGQEDS 373 (639)
T ss_pred hhhhhhhhhHHHHHHhCCCcc
Confidence 24456677777777776443
No 86
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.60 E-value=5.6e-14 Score=157.00 Aligned_cols=304 Identities=18% Similarity=0.175 Sum_probs=220.7
Q ss_pred HHHHHHHHHHcCCCChhhHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 003891 2 LVASYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCY 81 (788)
Q Consensus 2 Ai~~~~kaL~~~P~~~~a~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 81 (788)
|+..+-++++++|....+ +..+|.+|...-+...|.++|++|.++++.++.++-..+..|.+..+++.|....
T Consensus 477 al~ali~alrld~~~apa-------f~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~ 549 (1238)
T KOG1127|consen 477 ALHALIRALRLDVSLAPA-------FAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEIC 549 (1238)
T ss_pred HHHHHHHHHhcccchhHH-------HHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHH
Confidence 566788889999987776 6666777766678889999999999999999888888888888888888887776
Q ss_pred HHHHHhCCCC--HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHH
Q 003891 82 EKAALERPMY--AEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKA 159 (788)
Q Consensus 82 ~kal~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~a 159 (788)
-.+-+..|.. ...|..+|..|.+.++..+|+..|+.+++.+|++...|..+ |.+|...|.+..|++.|.++
T Consensus 550 l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gL-------GeAY~~sGry~~AlKvF~kA 622 (1238)
T KOG1127|consen 550 LRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGL-------GEAYPESGRYSHALKVFTKA 622 (1238)
T ss_pred HHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHH-------HHHHHhcCceehHHHhhhhh
Confidence 6555555432 34455677777777888888888888888888776555443 44444466778888888888
Q ss_pred HHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-
Q 003891 160 LYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHC-------AEACNNLGVIYKDRDNLDKAVECYQMALSIK- 231 (788)
Q Consensus 160 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-------~~~~~~la~~~~~~g~~~eA~~~~~~al~~~- 231 (788)
..++|.+..+.+..+.+...+|+|.+|+..+...+...... .+.+...+..+...|-+.+|..+++++++..
T Consensus 623 s~LrP~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~ 702 (1238)
T KOG1127|consen 623 SLLRPLSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFI 702 (1238)
T ss_pred HhcCcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 88888777777777777777777777777777766543322 3333333333333444444444444433220
Q ss_pred --------------------------------------------------C-------------------CCHHHHHHHH
Q 003891 232 --------------------------------------------------P-------------------NFSQSLNNLG 242 (788)
Q Consensus 232 --------------------------------------------------p-------------------~~~~~~~~la 242 (788)
+ ..+..|+++|
T Consensus 703 ~~l~h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLG 782 (1238)
T KOG1127|consen 703 VSLIHSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLG 782 (1238)
T ss_pred HHHHHhhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHh
Confidence 1 1244899999
Q ss_pred HHHHH--------cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhhHHhHHHHhh
Q 003891 243 VVYTV--------QGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMN 314 (788)
Q Consensus 243 ~~~~~--------~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~a~~~~lla~~ 314 (788)
..|+. +.+...|+.++++++++..++...|..||.+ ...|++.-|..+|-+.+...|.....|.| ++..
T Consensus 783 inylr~f~~l~et~~~~~~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~sep~~~~~W~N--lgvL 859 (1238)
T KOG1127|consen 783 INYLRYFLLLGETMKDACTAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSEPTCHCQWLN--LGVL 859 (1238)
T ss_pred HHHHHHHHHcCCcchhHHHHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhccccchhheec--ccee
Confidence 88876 3445689999999999999999999999998 66699999999999999999999999988 4555
Q ss_pred hccCCCch
Q 003891 315 YINEGHDD 322 (788)
Q Consensus 315 ~l~~g~~~ 322 (788)
++...+.+
T Consensus 860 ~l~n~d~E 867 (1238)
T KOG1127|consen 860 VLENQDFE 867 (1238)
T ss_pred EEecccHH
Confidence 66555544
No 87
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=99.58 E-value=4.5e-14 Score=153.53 Aligned_cols=339 Identities=16% Similarity=0.104 Sum_probs=216.2
Q ss_pred EeeccCCcccC--hhHHhhhhhhcccCCCceEEEEEeccccCChhhHHHHHHHhh-----hCCeEEEccCCCHHHHHHHH
Q 003891 357 IGYVSPDYFTH--SVSYFIEAPLVYHDYQNYKVVVYSAVVKADAKTIRFREKVMK-----KGGIWRDIYGIDEKKVAAMV 429 (788)
Q Consensus 357 iGyvS~df~~H--~v~~~~~~~l~~~dr~~fev~~Y~~~~~~D~~t~~~r~~~~~-----~~~~~~~~~~~~~~~~a~~i 429 (788)
|.+++..+..+ .....+..+...+...+++|.+++.................. ....+..........+...+
T Consensus 2 I~ii~~~~~~~~~G~~~~~~~l~~~L~~~g~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (374)
T cd03801 2 ILLVTPEYPPSVGGAERHVLELARALAARGHEVTVLTPGDGGLPDEEEVGGIVVVRPPPLLRVRRLLLLLLLALRLRRLL 81 (374)
T ss_pred eeEEecccCCccCcHhHHHHHHHHHHHhcCceEEEEecCCCCCCceeeecCcceecCCcccccchhHHHHHHHHHHHHHh
Confidence 45555555433 334555566677766789999887765433221110000000 00000000011134577778
Q ss_pred HhCCCcEEEeCCCCCCCCcccccccCCCCeEEecccCCCCCC------------------CCCccEEEecCCCCCcCccC
Q 003891 430 REDKIDILVELTGHTANNKLGMMACQPAPVQVTWIGYPNTTG------------------LPTIDYRITDSLADPPETKQ 491 (788)
Q Consensus 430 ~~d~idilvdl~g~t~~~~~~~~a~r~Apvq~~~~g~~~ttg------------------~~~~Dy~i~d~~~~p~~~~~ 491 (788)
...++||++-...+...........+-.|+-+...+...... +...|++++-.-..-.....
T Consensus 82 ~~~~~Dii~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~s~~~~~~~~~ 161 (374)
T cd03801 82 RRERFDVVHAHDWLALLAAALAARLLGIPLVLTVHGLEFGRPGNELGLLLKLARALERRALRRADRIIAVSEATREELRE 161 (374)
T ss_pred hhcCCcEEEEechhHHHHHHHHHHhcCCcEEEEeccchhhccccchhHHHHHHHHHHHHHHHhCCEEEEecHHHHHHHHh
Confidence 889999998776666544332222344565555544433221 23457776543222223334
Q ss_pred CCc---cceEEcCCCccccCCCCCC-CCCCCCCCCCCCCeEEEecCCC--CcCCHHHHHHHHHHHhHcCCcEEEEecCCC
Q 003891 492 KHV---EELIRLPECFLCYTPSPEA-GPVCPTPALTNGFITFGSFNNL--AKITPKVLQVWARILCAVPNSRLVVKCKPF 565 (788)
Q Consensus 492 ~~~---e~l~~lp~~~~~~~~~~~~-~~~~~~~~~~~~~~~f~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~l~~~~~ 565 (788)
.+. .++..+|+..- ....... ...........+.++++.+++. .|....++++|..+....|+.+|++.|.+
T Consensus 162 ~~~~~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~k~~~~~i~~~~~~~~~~~~~~l~i~G~~- 239 (374)
T cd03801 162 LGGVPPEKITVIPNGVD-TERFRPAPRAARRRLGIPEDEPVILFVGRLVPRKGVDLLLEALAKLRKEYPDVRLVIVGDG- 239 (374)
T ss_pred cCCCCCCcEEEecCccc-ccccCccchHHHhhcCCcCCCeEEEEecchhhhcCHHHHHHHHHHHhhhcCCeEEEEEeCc-
Confidence 443 46777776421 1110000 0001223344556677777764 89999999999999999999999999865
Q ss_pred CCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHHHHhcccccEeecCCCC-CCchhHHHHhhhCCceeecCCCccCccc
Q 003891 566 CCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNV 644 (788)
Q Consensus 566 ~~~~~~~~l~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~~Dv~Ld~~~~-~g~~t~~eal~~GvPvvt~~g~~~~~r~ 644 (788)
.....+.+.+.+.+.. ++|.|.|.++ .++....|..+|+++.|+.+ +.+++.+|||++|+|||+.....+...+
T Consensus 240 ---~~~~~~~~~~~~~~~~-~~v~~~g~~~-~~~~~~~~~~~di~i~~~~~~~~~~~~~Ea~~~g~pvI~~~~~~~~~~~ 314 (374)
T cd03801 240 ---PLREELEALAAELGLG-DRVTFLGFVP-DEDLPALYAAADVFVLPSLYEGFGLVLLEAMAAGLPVVASDVGGIPEVV 314 (374)
T ss_pred ---HHHHHHHHHHHHhCCC-cceEEEeccC-hhhHHHHHHhcCEEEecchhccccchHHHHHHcCCcEEEeCCCChhHHh
Confidence 6677777777788887 8999999987 68899999999999999977 6688999999999999996654333322
Q ss_pred hhHHHhhhCCcccccC--CHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHH
Q 003891 645 GVSLLTKVGLKHLIAK--NEDEYVQLALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYR 710 (788)
Q Consensus 645 ~~~~l~~~gl~~~ia~--~~~~y~~~a~~l~~d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~ 710 (788)
.. +-..++.. |++++++...++.+|++.+..++++.++...+. |+++.+++.+.+.|+
T Consensus 315 -----~~-~~~g~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 374 (374)
T cd03801 315 -----ED-GETGLLVPPGDPEALAEAILRLLDDPELRRRLGEAARERVAER--FSWDRVAARTEEVYY 374 (374)
T ss_pred -----cC-CcceEEeCCCCHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHh--cCHHHHHHHHHHhhC
Confidence 11 33334433 469999999999999999999999988666544 899999999988773
No 88
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.58 E-value=2.6e-12 Score=140.41 Aligned_cols=271 Identities=18% Similarity=0.064 Sum_probs=199.9
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHH
Q 003891 54 DPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMY---AEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKN 130 (788)
Q Consensus 54 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 130 (788)
+|+.+.++..+|.++...|+.+++...+.++.+..+.+ .+.....+.++...|++++|.+.++++++.+|++...+.
T Consensus 2 dp~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~ 81 (355)
T cd05804 2 DPDFALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALK 81 (355)
T ss_pred CCccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHH
Confidence 79999999999999999999999999999988877644 567788899999999999999999999999999885554
Q ss_pred HHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 003891 131 NMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVI 210 (788)
Q Consensus 131 ~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 210 (788)
. +..+..++.. .+....+.+.+......+|........+|.++...|++++|+..++++++.+|++..++..+|.+
T Consensus 82 ~-~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i 157 (355)
T cd05804 82 L-HLGAFGLGDF---SGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHV 157 (355)
T ss_pred H-hHHHHHhccc---ccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHH
Confidence 3 3344444422 34555555555554456677778888999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHH---HHHHHHHH
Q 003891 211 YKDRDNLDKAVECYQMALSIKPNFS----QSLNNLGVVYTVQGKMDAAAEMIEKAIAANPT--YAEAYN---NLGVLYRD 281 (788)
Q Consensus 211 ~~~~g~~~eA~~~~~~al~~~p~~~----~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~--~~~~~~---~la~~~~~ 281 (788)
+...|++++|+.++++++...|..+ ..+..++.++...|++++|+..|++++...|. ...... .+...+..
T Consensus 158 ~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 237 (355)
T cd05804 158 LEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLEL 237 (355)
T ss_pred HHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHh
Confidence 9999999999999999999876443 24668999999999999999999999876662 221111 22233344
Q ss_pred cCCHHHHHHH---HHHHHhhCCCChhhHHhHHHHhhhccCCCchHHHHHH
Q 003891 282 AGSISLAIDA---YEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAH 328 (788)
Q Consensus 282 ~g~~~eA~~~---~~~al~l~p~~~~a~~~~lla~~~l~~g~~~~~~~~~ 328 (788)
.|....+..+ ........|...........+..++..|+.+++....
T Consensus 238 ~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L 287 (355)
T cd05804 238 AGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLL 287 (355)
T ss_pred cCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHH
Confidence 4433333332 1111111122222233334556666777766655443
No 89
>cd03792 GT1_Trehalose_phosphorylase Trehalose phosphorylase (TP) reversibly catalyzes trehalose synthesis and degradation from alpha-glucose-1-phosphate (alpha-Glc-1-P) and glucose. The catalyzing activity includes the phosphorolysis of trehalose, which produce alpha-Glc-1-P and glucose, and the subsequent synthesis of trehalose. This family is most closely related to the GT1 family of glycosyltransferases.
Probab=99.57 E-value=4.5e-13 Score=147.38 Aligned_cols=335 Identities=11% Similarity=0.018 Sum_probs=204.7
Q ss_pred eEeeccCCcccChhHHhhhhhhcccCCCceEEEEEeccccCChhh--HHHHHHHhhhCCeEEEccCCCHHH---H----H
Q 003891 356 VIGYVSPDYFTHSVSYFIEAPLVYHDYQNYKVVVYSAVVKADAKT--IRFREKVMKKGGIWRDIYGIDEKK---V----A 426 (788)
Q Consensus 356 riGyvS~df~~H~v~~~~~~~l~~~dr~~fev~~Y~~~~~~D~~t--~~~r~~~~~~~~~~~~~~~~~~~~---~----a 426 (788)
||.++++.+..--+...+..+.+..++.+.|+.+|...+..+... .++.... . +... .++... . .
T Consensus 1 ki~~~~~~~~~GGv~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~-~--g~~~---~~~~~~~~~~~~~~~ 74 (372)
T cd03792 1 KVLHVNSTPYGGGVAEILHSLVPLMRDLGVDTRWEVIKGDPEFFNVTKKFHNAL-Q--GADI---ELSEEEKEIYLEWNE 74 (372)
T ss_pred CeEEEeCCCCCCcHHHHHHHHHHHHHHcCCCceEEecCCChhHHHHHHHhhHhh-c--CCCC---CCCHHHHHHHHHHHH
Confidence 466677767666677778888888888999999987655332211 1111111 0 1111 222221 1 1
Q ss_pred HH----HHhCCCcEEEeCCCCCCCC-cccccccC-CCCeEEecccCCCCC----------CCCCccEEEecCCCCCcCcc
Q 003891 427 AM----VREDKIDILVELTGHTANN-KLGMMACQ-PAPVQVTWIGYPNTT----------GLPTIDYRITDSLADPPETK 490 (788)
Q Consensus 427 ~~----i~~d~idilvdl~g~t~~~-~~~~~a~r-~Apvq~~~~g~~~tt----------g~~~~Dy~i~d~~~~p~~~~ 490 (788)
.. +...+.||++- |+... -+..+..+ -.|+=+.+-+...+. .+...|.+++.. +....
T Consensus 75 ~~~~~~~~~~~~Dvv~~---h~~~~~~~~~~~~~~~~~~i~~~H~~~~~~~~~~~~~~~~~~~~~d~~i~~~---~~~~~ 148 (372)
T cd03792 75 ENAERPLLDLDADVVVI---HDPQPLALPLFKKKRGRPWIWRCHIDLSSPNRRVWDFLQPYIEDYDAAVFHL---PEYVP 148 (372)
T ss_pred HHhccccccCCCCEEEE---CCCCchhHHHhhhcCCCeEEEEeeeecCCCcHHHHHHHHHHHHhCCEEeecH---HHhcC
Confidence 11 22568999963 22211 12222222 345333322211110 012245544322 11122
Q ss_pred CCCccceEEcCCCccccCCC--CCCC----CCCCCCCCCCCCeEEEecCCC--CcCCHHHHHHHHHHHhHcCCcEEEEec
Q 003891 491 QKHVEELIRLPECFLCYTPS--PEAG----PVCPTPALTNGFITFGSFNNL--AKITPKVLQVWARILCAVPNSRLVVKC 562 (788)
Q Consensus 491 ~~~~e~l~~lp~~~~~~~~~--~~~~----~~~~~~~~~~~~~~f~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~l~~ 562 (788)
..+..+.+.+|+..=...+. ...+ ..+...+++.+.++++.++|+ .|..+.+++++.++.+..|+.+|+++|
T Consensus 149 ~~~~~~~~vipngvd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vgrl~~~Kg~~~ll~a~~~l~~~~~~~~l~i~G 228 (372)
T cd03792 149 PQVPPRKVIIPPSIDPLSGKNRELSPADIEYILEKYGIDPERPYITQVSRFDPWKDPFGVIDAYRKVKERVPDPQLVLVG 228 (372)
T ss_pred CCCCCceEEeCCCCCCCccccCCCCHHHHHHHHHHhCCCCCCcEEEEEeccccccCcHHHHHHHHHHHhhCCCCEEEEEe
Confidence 23333333666532111000 0000 011124566677788999987 899999999999999888999999999
Q ss_pred CCCCCHH-HHHHHHHHHHHcCCCCCcEEEcCCcC-CcHHHHHhcccccEeecCCCC-CCchhHHHHhhhCCceeecCCCc
Q 003891 563 KPFCCDS-VRHRFLSTLEQLGLESLRVDLLPLIL-LNHDHMQAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSV 639 (788)
Q Consensus 563 ~~~~~~~-~~~~l~~~~~~~gi~~~rv~~~~~~~-~~~~~~~~~~~~Dv~Ld~~~~-~g~~t~~eal~~GvPvvt~~g~~ 639 (788)
.+...++ ....+++..+..|+. ++|.|.+..+ +.++....|+.+|+|+-|+.+ +.|.+++|||++|+|||+-....
T Consensus 229 ~g~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~ad~~v~~s~~Eg~g~~~lEA~a~G~Pvv~s~~~~ 307 (372)
T cd03792 229 SGATDDPEGWIVYEEVLEYAEGD-PDIHVLTLPPVSDLEVNALQRASTVVLQKSIREGFGLTVTEALWKGKPVIAGPVGG 307 (372)
T ss_pred CCCCCCchhHHHHHHHHHHhCCC-CCeEEEecCCCCHHHHHHHHHhCeEEEeCCCccCCCHHHHHHHHcCCCEEEcCCCC
Confidence 7743222 223334444457877 7899988763 367788899999999999977 56999999999999999843222
Q ss_pred cCccchhHHHhhhCCcccccCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHH
Q 003891 640 HAHNVGVSLLTKVGLKHLIAKNEDEYVQLALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRN 711 (788)
Q Consensus 640 ~~~r~~~~~l~~~gl~~~ia~~~~~y~~~a~~l~~d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~~ 711 (788)
... ...-|..++++.+.++......++.+|++.++.|+++.++.+.+. |+++..++++.+.|+.
T Consensus 308 ~~~------~i~~~~~g~~~~~~~~~a~~i~~ll~~~~~~~~~~~~a~~~~~~~--~s~~~~~~~~~~~~~~ 371 (372)
T cd03792 308 IPL------QIEDGETGFLVDTVEEAAVRILYLLRDPELRRKMGANAREHVREN--FLITRHLKDYLYLISK 371 (372)
T ss_pred chh------hcccCCceEEeCCcHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHH--cCHHHHHHHHHHHHHh
Confidence 111 112355667778889998888899999999999999998876543 8999999999999975
No 90
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.56 E-value=6.1e-13 Score=136.24 Aligned_cols=118 Identities=15% Similarity=0.152 Sum_probs=87.9
Q ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHH--
Q 003891 53 IDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYA---EAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEI-- 127 (788)
Q Consensus 53 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~-- 127 (788)
.++..+..++.+|..+...|++++|+..+++++..+|.++ .+++.+|.++...|++++|+..|+++++..|++..
T Consensus 28 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~ 107 (235)
T TIGR03302 28 VEEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDAD 107 (235)
T ss_pred cccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchH
Confidence 3456788899999999999999999999999999988765 57899999999999999999999999999988765
Q ss_pred -HHHHHHHHHHHh-hhhhhhcCCHHHHHHHHHHHHHhCCCCHHHH
Q 003891 128 -AKNNMAIALTDL-GTKVKLEGDINQGVAYYKKALYYNWHYADAM 170 (788)
Q Consensus 128 -~~~~la~~l~~l-g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 170 (788)
+++.++.++... +..+...|++++|++.+++++..+|++....
T Consensus 108 ~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 152 (235)
T TIGR03302 108 YAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAP 152 (235)
T ss_pred HHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHH
Confidence 344444444332 2222233566777777777777776665443
No 91
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=99.56 E-value=1.8e-13 Score=147.81 Aligned_cols=319 Identities=15% Similarity=0.149 Sum_probs=195.8
Q ss_pred eEeeccCCcc-cChhHHhhhhhhcccCCCceEEEEEeccccCChhhHHHHHHHhhhCCeEEEc----------cCCCHHH
Q 003891 356 VIGYVSPDYF-THSVSYFIEAPLVYHDYQNYKVVVYSAVVKADAKTIRFREKVMKKGGIWRDI----------YGIDEKK 424 (788)
Q Consensus 356 riGyvS~df~-~H~v~~~~~~~l~~~dr~~fev~~Y~~~~~~D~~t~~~r~~~~~~~~~~~~~----------~~~~~~~ 424 (788)
||.+++..+. .--+...+..+...+.+.+++|++++........ ...... -.+..+ .-.....
T Consensus 1 kI~i~~~~~~~~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~~~~-~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~ 74 (348)
T cd03820 1 KILFVIPSLGNAGGAERVLSNLANALAEKGHEVTIISLDKGEPPF-YELDPK-----IKVIDLGDKRDSKLLARFKKLRR 74 (348)
T ss_pred CeEEEeccccCCCChHHHHHHHHHHHHhCCCeEEEEecCCCCCCc-cccCCc-----cceeecccccccchhccccchHH
Confidence 3556666655 2223344445556665578888888765543010 000100 011111 1123467
Q ss_pred HHHHHHhCCCcEEEeCCCCCCCCcccccccCCCCeEEecccCCCCCC------------CCCccEEEecCCCCCcCccCC
Q 003891 425 VAAMVREDKIDILVELTGHTANNKLGMMACQPAPVQVTWIGYPNTTG------------LPTIDYRITDSLADPPETKQK 492 (788)
Q Consensus 425 ~a~~i~~d~idilvdl~g~t~~~~~~~~a~r~Apvq~~~~g~~~ttg------------~~~~Dy~i~d~~~~p~~~~~~ 492 (788)
+.+.|+..++|+++-..++ ...-+..+..+..|+=+..-+.+.... +...|.+++..-..-......
T Consensus 75 ~~~~l~~~~~d~i~~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~ 153 (348)
T cd03820 75 LRKLLKNNKPDVVISFLTS-LLTFLASLGLKIVKLIVSEHNSPDAYKKRLRRLLLRRLLYRRADAVVVLTEEDRALYYKK 153 (348)
T ss_pred HHHhhcccCCCEEEEcCch-HHHHHHHHhhccccEEEecCCCccchhhhhHHHHHHHHHHhcCCEEEEeCHHHHHHhhcc
Confidence 8888999999999977665 111111111222133222222221111 345677765432211112233
Q ss_pred CccceEEcCCCccccCCCCCCCCCCCCCCCCCCCeEEEecCCC--CcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHH
Q 003891 493 HVEELIRLPECFLCYTPSPEAGPVCPTPALTNGFITFGSFNNL--AKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSV 570 (788)
Q Consensus 493 ~~e~l~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~ 570 (788)
+..++..+|+.. ..... .+. .+.+..+|+++++. .|..+.++++|.++.+..|+.+|+++|.+ ..
T Consensus 154 ~~~~~~vi~~~~-~~~~~--~~~------~~~~~~~i~~~g~~~~~K~~~~l~~~~~~l~~~~~~~~l~i~G~~----~~ 220 (348)
T cd03820 154 FNKNVVVIPNPL-PFPPE--EPS------SDLKSKRILAVGRLVPQKGFDLLIEAWAKIAKKHPDWKLRIVGDG----PE 220 (348)
T ss_pred CCCCeEEecCCc-Chhhc--ccc------CCCCCcEEEEEEeeccccCHHHHHHHHHHHHhcCCCeEEEEEeCC----CC
Confidence 456677777542 11110 000 23444566666654 88999999999999988999999999876 34
Q ss_pred HHHHHHHHHHcCCCCCcEEEcCCcCCcHHHHHhcccccEeecCCCC-CCchhHHHHhhhCCceeecCCCccCccchhHHH
Q 003891 571 RHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLL 649 (788)
Q Consensus 571 ~~~l~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~~Dv~Ld~~~~-~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l 649 (788)
...+.+.+++.|+. ++|.|.|. .++....|+.+|+++-|+.+ +.|++++|||++|+|||+....... ..+
T Consensus 221 ~~~~~~~~~~~~~~-~~v~~~g~---~~~~~~~~~~ad~~i~ps~~e~~~~~~~Ea~a~G~Pvi~~~~~~~~-----~~~ 291 (348)
T cd03820 221 REALEALIKELGLE-DRVILLGF---TKNIEEYYAKASIFVLTSRFEGFPMVLLEAMAFGLPVISFDCPTGP-----SEI 291 (348)
T ss_pred HHHHHHHHHHcCCC-CeEEEcCC---cchHHHHHHhCCEEEeCccccccCHHHHHHHHcCCCEEEecCCCch-----Hhh
Confidence 56677778888997 89999987 46788889999999999977 6699999999999999984322111 112
Q ss_pred hhhCCccccc--CCHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHH
Q 003891 650 TKVGLKHLIA--KNEDEYVQLALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALGLE 706 (788)
Q Consensus 650 ~~~gl~~~ia--~~~~~y~~~a~~l~~d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e 706 (788)
..-|-.+++. .|.+++++...++.+|++.++.++++.+.... . |+++.+++.++
T Consensus 292 ~~~~~~g~~~~~~~~~~~~~~i~~ll~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~ 347 (348)
T cd03820 292 IEDGVNGLLVPNGDVEALAEALLRLMEDEELRKRMGANARESAE-R--FSIENIIKQWE 347 (348)
T ss_pred hccCcceEEeCCCCHHHHHHHHHHHHcCHHHHHHHHHHHHHHHH-H--hCHHHHHHHhc
Confidence 2223234443 46799999999999999999999998865442 3 88888887764
No 92
>PLN03077 Protein ECB2; Provisional
Probab=99.56 E-value=5.1e-12 Score=153.96 Aligned_cols=261 Identities=15% Similarity=0.084 Sum_probs=197.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHH
Q 003891 58 APAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALT 137 (788)
Q Consensus 58 ~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~ 137 (788)
..++..+...|.+.|++++|.+.|++..+ .+...|..+...|.+.|+.++|+..|++++...+.+...+..+..++.
T Consensus 424 ~~~~n~Li~~y~k~g~~~~A~~vf~~m~~---~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~ 500 (857)
T PLN03077 424 VVVANALIEMYSKCKCIDKALEVFHNIPE---KDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACA 500 (857)
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHhCCC---CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHh
Confidence 34556666777777888888887776533 345577778888888888888888888877543333322222222222
Q ss_pred ----------------------------HhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHH
Q 003891 138 ----------------------------DLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVF 189 (788)
Q Consensus 138 ----------------------------~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 189 (788)
.+-..|.+.|++++|.+.|++. +.+...|..+...|...|+.++|++.
T Consensus 501 ~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~----~~d~~s~n~lI~~~~~~G~~~~A~~l 576 (857)
T PLN03077 501 RIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH----EKDVVSWNILLTGYVAHGKGSMAVEL 576 (857)
T ss_pred hhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc----CCChhhHHHHHHHHHHcCCHHHHHHH
Confidence 2336677889999999999886 56778899999999999999999999
Q ss_pred HHHHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 003891 190 YELAFHF--NPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKP--NFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAAN 265 (788)
Q Consensus 190 ~~~al~~--~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p--~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~ 265 (788)
|++..+. .|+ ...+..+-..+.+.|+.++|.++|++..+..+ .+...|..+..++.+.|++++|.+.+++. ...
T Consensus 577 f~~M~~~g~~Pd-~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~ 654 (857)
T PLN03077 577 FNRMVESGVNPD-EVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM-PIT 654 (857)
T ss_pred HHHHHHcCCCCC-cccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHC-CCC
Confidence 9998874 444 55566667788999999999999999885432 34578899999999999999999999886 345
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhhHHhHHHHhhhccCCCchHHHHHHHH
Q 003891 266 PTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHRD 330 (788)
Q Consensus 266 p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~a~~~~lla~~~l~~g~~~~~~~~~~~ 330 (788)
|+ ..+|..|-..+...|+.+.+....+++++++|++...+ .+++..|...|+.+++.+..+.
T Consensus 655 pd-~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y--~ll~n~ya~~g~~~~a~~vr~~ 716 (857)
T PLN03077 655 PD-PAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYY--ILLCNLYADAGKWDEVARVRKT 716 (857)
T ss_pred CC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchH--HHHHHHHHHCCChHHHHHHHHH
Confidence 54 67788888888999999999999999999999976654 3566788888888776655443
No 93
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases. ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides.
Probab=99.56 E-value=2.7e-13 Score=148.12 Aligned_cols=337 Identities=16% Similarity=0.089 Sum_probs=203.8
Q ss_pred eEeeccCCcc-cChhHHhhhhhhcccCCCceEEEEEeccccCChhhHHHHHHHhhhCCeEEEc-cCCCHHHHHHHHHhCC
Q 003891 356 VIGYVSPDYF-THSVSYFIEAPLVYHDYQNYKVVVYSAVVKADAKTIRFREKVMKKGGIWRDI-YGIDEKKVAAMVREDK 433 (788)
Q Consensus 356 riGyvS~df~-~H~v~~~~~~~l~~~dr~~fev~~Y~~~~~~D~~t~~~r~~~~~~~~~~~~~-~~~~~~~~a~~i~~d~ 433 (788)
+|+|+++... .--+..+...+...+...+.++.++........... .... ........ .......+.+.++..+
T Consensus 1 kI~~v~~~~~~~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~~~~~~-~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (366)
T cd03822 1 RIALVSPYPPRKCGIATFTTDLVNALSARGPDVLVVSVAALYPSLLY-GGEQ---EVVRVIVLDNPLDYRRAARAIRLSG 76 (366)
T ss_pred CeEEecCCCCCCCcHHHHHHHHHHHhhhcCCeEEEEEeecccCcccC-CCcc---cceeeeecCCchhHHHHHHHHhhcC
Confidence 4677776543 233556677777777777778877765432211100 0000 00011111 1233456788899999
Q ss_pred CcEEEeCCCCCC-CCccccccc-----CCCCeEEecccC-CCCCC----------CCCccEEEecC-CCCCcCccCCCcc
Q 003891 434 IDILVELTGHTA-NNKLGMMAC-----QPAPVQVTWIGY-PNTTG----------LPTIDYRITDS-LADPPETKQKHVE 495 (788)
Q Consensus 434 idilvdl~g~t~-~~~~~~~a~-----r~Apvq~~~~g~-~~ttg----------~~~~Dy~i~d~-~~~p~~~~~~~~e 495 (788)
+||++-...+.- +........ +..|+-+..-++ +.... +...|.+++.. -..-.-....+.+
T Consensus 77 ~dii~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~~~~~ 156 (366)
T cd03822 77 PDVVVIQHEYGIFGGEAGLYLLLLLRGLGIPVVVTLHTVLLHEPRPGDRALLRLLLRRADAVIVMSSELLRALLLRAYPE 156 (366)
T ss_pred CCEEEEeeccccccchhhHHHHHHHhhcCCCEEEEEecCCccccchhhhHHHHHHHhcCCEEEEeeHHHHHHHHhhcCCC
Confidence 999985432211 111111111 445665555444 11110 12346666542 0000001122357
Q ss_pred ceEEcCCCccccCCCCCCCCCCCCCCCCCCCeEEEecCCC--CcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHH-H
Q 003891 496 ELIRLPECFLCYTPSPEAGPVCPTPALTNGFITFGSFNNL--AKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVR-H 572 (788)
Q Consensus 496 ~l~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~~-~ 572 (788)
++..+|+..-...+.. .........+.+.+++++++++ .|..+.+++++.++.+..|+.+|+++|.+....... .
T Consensus 157 ~~~~i~~~~~~~~~~~--~~~~~~~~~~~~~~~i~~~G~~~~~K~~~~ll~a~~~~~~~~~~~~l~i~G~~~~~~~~~~~ 234 (366)
T cd03822 157 KIAVIPHGVPDPPAEP--PESLKALGGLDGRPVLLTFGLLRPYKGLELLLEALPLLVAKHPDVRLLVAGETHPDLERYRG 234 (366)
T ss_pred cEEEeCCCCcCcccCC--chhhHhhcCCCCCeEEEEEeeccCCCCHHHHHHHHHHHHhhCCCeEEEEeccCccchhhhhh
Confidence 8888886532111110 0000111234455677777755 788999999999999999999999998753211111 1
Q ss_pred HHHHHHHHcCCCCCcEEEcCC-cCCcHHHHHhcccccEeecCCCCC---CchhHHHHhhhCCceeecCCCccCccchhHH
Q 003891 573 RFLSTLEQLGLESLRVDLLPL-ILLNHDHMQAYSLMDISLDTFPYA---GTTTTCESLYMGVPCVTMAGSVHAHNVGVSL 648 (788)
Q Consensus 573 ~l~~~~~~~gi~~~rv~~~~~-~~~~~~~~~~~~~~Dv~Ld~~~~~---g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~ 648 (788)
...+.+++.|+. ++|.|.|. ++ .++....|+.+|+++-|+.+. .+.+.+|||++|+|||+..... ...
T Consensus 235 ~~~~~i~~~~~~-~~v~~~~~~~~-~~~~~~~~~~ad~~v~ps~~e~~~~~~~~~Ea~a~G~PvI~~~~~~-~~~----- 306 (366)
T cd03822 235 EAYALAERLGLA-DRVIFINRYLP-DEELPELFSAADVVVLPYRSADQTQSGVLAYAIGFGKPVISTPVGH-AEE----- 306 (366)
T ss_pred hhHhHHHhcCCC-CcEEEecCcCC-HHHHHHHHhhcCEEEecccccccccchHHHHHHHcCCCEEecCCCC-hhe-----
Confidence 111346788997 89999987 66 688999999999999998665 4779999999999999844221 111
Q ss_pred HhhhCCccccc--CCHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHH
Q 003891 649 LTKVGLKHLIA--KNEDEYVQLALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYR 710 (788)
Q Consensus 649 l~~~gl~~~ia--~~~~~y~~~a~~l~~d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~ 710 (788)
+.. +-.+++. .|.+++++....+.+|++.+.+++++.+....+ |+++.+++.+.++|+
T Consensus 307 i~~-~~~g~~~~~~d~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~---~s~~~~~~~~~~~~~ 366 (366)
T cd03822 307 VLD-GGTGLLVPPGDPAALAEAIRRLLADPELAQALRARAREYARA---MSWERVAERYLRLLA 366 (366)
T ss_pred eee-CCCcEEEcCCCHHHHHHHHHHHHcChHHHHHHHHHHHHHHhh---CCHHHHHHHHHHHhC
Confidence 111 2334443 579999999999999999999999998877643 899999999998873
No 94
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.56 E-value=2.1e-12 Score=139.43 Aligned_cols=268 Identities=14% Similarity=0.113 Sum_probs=218.4
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC
Q 003891 27 LTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRG 106 (788)
Q Consensus 27 l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g 106 (788)
++..+.-.+..++|.+.++..+++++..|++++.+...|..+..+|+-++|..+...++..++....+|..+|.++....
T Consensus 10 lF~~~lk~yE~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK 89 (700)
T KOG1156|consen 10 LFRRALKCYETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDK 89 (700)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhh
Confidence 66777778888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHH
Q 003891 107 DLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMA 186 (788)
Q Consensus 107 ~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A 186 (788)
+|++|+++|+.|+.+.|++...+..++....++ ++++.....-.+.++..|..-..|...+..+...|++..|
T Consensus 90 ~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~Qm-------Rd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A 162 (700)
T KOG1156|consen 90 KYDEAIKCYRNALKIEKDNLQILRDLSLLQIQM-------RDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMA 162 (700)
T ss_pred hHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHH-------HhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999987777666665554 4899999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcC---CCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 003891 187 IVFYELAFHFN---PHC-----AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMI 258 (788)
Q Consensus 187 ~~~~~~al~~~---p~~-----~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l 258 (788)
....+...+.. |+. .+.......+..+.|.+++|++.+.+--..--+........+.++.+++++++|...|
T Consensus 163 ~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y 242 (700)
T KOG1156|consen 163 LEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVY 242 (700)
T ss_pred HHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHH
Confidence 99888877654 332 3455556677777888888887776643333333445566788888899999999999
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH-HHHHHHHhhCCC
Q 003891 259 EKAIAANPTYAEAYNNLGVLYRDAGSISLAI-DAYEQCLKIDPD 301 (788)
Q Consensus 259 ~kal~~~p~~~~~~~~la~~~~~~g~~~eA~-~~~~~al~l~p~ 301 (788)
...+..+|++...+..+-.++.+-.+--++. ..|...-+..|.
T Consensus 243 ~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r 286 (700)
T KOG1156|consen 243 RRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPR 286 (700)
T ss_pred HHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcc
Confidence 9999999998888887777775333333344 455554444443
No 95
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.55 E-value=5e-13 Score=136.91 Aligned_cols=187 Identities=18% Similarity=0.133 Sum_probs=153.4
Q ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---HH
Q 003891 22 CLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYA---PAYYNLGVVYSELMQYDTALGCYEKAALERPMYAE---AY 95 (788)
Q Consensus 22 ~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~---~~ 95 (788)
..+..++.+|..++..|++++|+..|+++++.+|+++ .+++.+|.++...|++++|+..|+++++..|+++. ++
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 110 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAY 110 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHH
Confidence 3456689999999999999999999999999999875 68899999999999999999999999999998765 79
Q ss_pred HHHHHHHHHC--------CCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHhCCCCH
Q 003891 96 CNMGVIYKNR--------GDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYA 167 (788)
Q Consensus 96 ~~la~~~~~~--------g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~ 167 (788)
+.+|.++... |++++|++.|+++++.+|++......+ ..++.. ... ..
T Consensus 111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~----~~~~~~-------~~~-------------~~ 166 (235)
T TIGR03302 111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAK----KRMDYL-------RNR-------------LA 166 (235)
T ss_pred HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHH----HHHHHH-------HHH-------------HH
Confidence 9999999986 889999999999999999986543222 111111 000 01
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 003891 168 DAMYNLGVAYGEMLKFDMAIVFYELAFHFNPH---CAEACNNLGVIYKDRDNLDKAVECYQMALSIKP 232 (788)
Q Consensus 168 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p 232 (788)
.....+|.++...|++++|+..++++++..|+ ...+++.+|.++...|++++|..+++......|
T Consensus 167 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 167 GKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 22357788899999999999999999988665 467899999999999999999998888776555
No 96
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.55 E-value=2.3e-12 Score=153.24 Aligned_cols=261 Identities=15% Similarity=0.098 Sum_probs=221.5
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Q 003891 26 VLTDLGTSLKLAGNTQDGIQKYYEALKID-PHYAPAYYNLGVVYSELMQYDTALGCYEKAALER-PMYAEAYCNMGVIYK 103 (788)
Q Consensus 26 ~l~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~-p~~~~~~~~la~~~~ 103 (788)
+|..+...|.+.|++++|+++|++..+.. .-+...+..+...+.+.|++++|.+.+..+++.. +.+..++..+...|.
T Consensus 292 t~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~ 371 (697)
T PLN03081 292 AWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYS 371 (697)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHH
Confidence 47778888999999999999999997753 2356789999999999999999999999999875 556788999999999
Q ss_pred HCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCC
Q 003891 104 NRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNW-HYADAMYNLGVAYGEMLK 182 (788)
Q Consensus 104 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~ 182 (788)
+.|++++|.+.|++..+ |+ . ..|..+...|.+.|+.++|++.|++..+... -+...+..+...+...|+
T Consensus 372 k~G~~~~A~~vf~~m~~--~d-~-------~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~ 441 (697)
T PLN03081 372 KWGRMEDARNVFDRMPR--KN-L-------ISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGL 441 (697)
T ss_pred HCCCHHHHHHHHHhCCC--CC-e-------eeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCc
Confidence 99999999999998764 32 2 2344555566678899999999999887532 245668888889999999
Q ss_pred hHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 003891 183 FDMAIVFYELAFHFNP--HCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEK 260 (788)
Q Consensus 183 ~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~k 260 (788)
.++|.++|+...+... .+...|..+...|.+.|++++|.+.+++. ... .+...|..+...+...|+++.|...+++
T Consensus 442 ~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~-~~~-p~~~~~~~Ll~a~~~~g~~~~a~~~~~~ 519 (697)
T PLN03081 442 SEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA-PFK-PTVNMWAALLTACRIHKNLELGRLAAEK 519 (697)
T ss_pred HHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC-CCC-CCHHHHHHHHHHHHHcCCcHHHHHHHHH
Confidence 9999999999986422 24568889999999999999999999875 223 3466799999999999999999999999
Q ss_pred HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 003891 261 AIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKI 298 (788)
Q Consensus 261 al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l 298 (788)
.+++.|++...|..++.+|.+.|++++|.+.+++..+.
T Consensus 520 l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~ 557 (697)
T PLN03081 520 LYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRK 557 (697)
T ss_pred HhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999988765
No 97
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.52 E-value=2.2e-13 Score=127.35 Aligned_cols=122 Identities=15% Similarity=0.160 Sum_probs=74.6
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 003891 188 VFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPT 267 (788)
Q Consensus 188 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~ 267 (788)
..++++++.+|++ +..+|.++...|++++|+.+|++++..+|.+..++..+|.++...|++++|+..|++++.++|+
T Consensus 14 ~~~~~al~~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~ 90 (144)
T PRK15359 14 DILKQLLSVDPET---VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDAS 90 (144)
T ss_pred HHHHHHHHcCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence 4455555555543 3445666666666666666666666666666666666666666666666666666666666666
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhhHHhHHHH
Q 003891 268 YAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLA 312 (788)
Q Consensus 268 ~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~a~~~~lla 312 (788)
++.+++++|.++..+|++++|++.|++++++.|++...+.++..+
T Consensus 91 ~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~ 135 (144)
T PRK15359 91 HPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNA 135 (144)
T ss_pred CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Confidence 666666666666666666666666666666666666655544333
No 98
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis.
Probab=99.52 E-value=8.4e-13 Score=143.65 Aligned_cols=331 Identities=16% Similarity=0.106 Sum_probs=199.0
Q ss_pred EeeccCCcccChhHHhhhhhhcccCCCceEEEEEeccccCChhhHHHHHHHhhhCCeEEEcc--C--C---CHHHHHHHH
Q 003891 357 IGYVSPDYFTHSVSYFIEAPLVYHDYQNYKVVVYSAVVKADAKTIRFREKVMKKGGIWRDIY--G--I---DEKKVAAMV 429 (788)
Q Consensus 357 iGyvS~df~~H~v~~~~~~~l~~~dr~~fev~~Y~~~~~~D~~t~~~r~~~~~~~~~~~~~~--~--~---~~~~~a~~i 429 (788)
|.++.+.+..=-....+..+.....+.++++.+++.....+ ....++. ..-....+. . . ....+.+.+
T Consensus 2 i~~i~~~~~~gG~~~~~~~l~~~l~~~~~~v~~~~~~~~~~-~~~~~~~----~~i~v~~~~~~~~~~~~~~~~~~~~~~ 76 (365)
T cd03807 2 VLHVITGLDVGGAERMLVRLLKGLDRDRFEHVVISLTDRGE-LGEELEE----AGVPVYCLGKRPGRPDPGALLRLYKLI 76 (365)
T ss_pred eEEEEeeccCccHHHHHHHHHHHhhhccceEEEEecCcchh-hhHHHHh----cCCeEEEEecccccccHHHHHHHHHHH
Confidence 34444444332244555667777777788888877643322 1122222 011111221 1 0 124577888
Q ss_pred HhCCCcEEEeCCCCCCCCccccccc-CCCCeEEecccCCCCCC--------------CCCccEEEecCCCCCcCcc--CC
Q 003891 430 REDKIDILVELTGHTANNKLGMMAC-QPAPVQVTWIGYPNTTG--------------LPTIDYRITDSLADPPETK--QK 492 (788)
Q Consensus 430 ~~d~idilvdl~g~t~~~~~~~~a~-r~Apvq~~~~g~~~ttg--------------~~~~Dy~i~d~~~~p~~~~--~~ 492 (788)
+..++||++-...++.......... +-.|+-.+..+.....+ ....|.+++-....-.... ..
T Consensus 77 ~~~~~div~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~ 156 (365)
T cd03807 77 RRLRPDVVHTWMYHADLYGGLAARLAGVPPVIWGIRHSDLDLGKKSTRLVARLRRLLSSFIPLIVANSAAAAEYHQAIGY 156 (365)
T ss_pred HhhCCCEEEeccccccHHHHHHHHhcCCCcEEEEecCCcccccchhHhHHHHHHHHhccccCeEEeccHHHHHHHHHcCC
Confidence 8999999986544432111111111 33444444434333221 1223443321110000001 12
Q ss_pred CccceEEcCCCccc--cCCCCCCC-CCCCCCCCCCCCeEEEecCCC--CcCCHHHHHHHHHHHhHcCCcEEEEecCCCCC
Q 003891 493 HVEELIRLPECFLC--YTPSPEAG-PVCPTPALTNGFITFGSFNNL--AKITPKVLQVWARILCAVPNSRLVVKCKPFCC 567 (788)
Q Consensus 493 ~~e~l~~lp~~~~~--~~~~~~~~-~~~~~~~~~~~~~~f~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~ 567 (788)
-.+++..+|+..-. +.+..... ..+...+++++.++|+.+++. .|..+.+++++.++....|+.+|+++|.+.
T Consensus 157 ~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~~~K~~~~li~a~~~l~~~~~~~~l~i~G~~~-- 234 (365)
T cd03807 157 PPKKIVVIPNGVDTERFSPDLDARARLREELGLPEDTFLIGIVARLHPQKDHATLLRAAALLLKKFPNARLLLVGDGP-- 234 (365)
T ss_pred ChhheeEeCCCcCHHhcCCcccchHHHHHhcCCCCCCeEEEEecccchhcCHHHHHHHHHHHHHhCCCeEEEEecCCc--
Confidence 23566667753211 11111100 011233556677788888876 789999999999999999999999998763
Q ss_pred HHHHHHHHHHHH-HcCCCCCcEEEcCCcCCcHHHHHhcccccEeecCCCC-CCchhHHHHhhhCCceeecCCCccCccch
Q 003891 568 DSVRHRFLSTLE-QLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVG 645 (788)
Q Consensus 568 ~~~~~~l~~~~~-~~gi~~~rv~~~~~~~~~~~~~~~~~~~Dv~Ld~~~~-~g~~t~~eal~~GvPvvt~~g~~~~~r~~ 645 (788)
....+..... ..|+. ++|.|.|.. .+....|+.+|+++-|+.+ +.+++++|||++|+|||+-......
T Consensus 235 --~~~~~~~~~~~~~~~~-~~v~~~g~~---~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a~g~PvI~~~~~~~~---- 304 (365)
T cd03807 235 --DRANLELLALKELGLE-DKVILLGER---SDVPALLNALDVFVLSSLSEGFPNVLLEAMACGLPVVATDVGDNA---- 304 (365)
T ss_pred --chhHHHHHHHHhcCCC-ceEEEcccc---ccHHHHHHhCCEEEeCCccccCCcHHHHHHhcCCCEEEcCCCChH----
Confidence 2333344444 77887 899999864 4677888999999999977 6689999999999999984322111
Q ss_pred hHHHhhhCCcccc--cCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHH
Q 003891 646 VSLLTKVGLKHLI--AKNEDEYVQLALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYR 710 (788)
Q Consensus 646 ~~~l~~~gl~~~i--a~~~~~y~~~a~~l~~d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~ 710 (788)
.++.. .+++ ..|.+++++....+.+|++.+..++++.++...+. |+++..++.+++.|+
T Consensus 305 -e~~~~---~g~~~~~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~--~s~~~~~~~~~~~y~ 365 (365)
T cd03807 305 -ELVGD---TGFLVPPGDPEALAEAIEALLADPALRQALGEAARERIEEN--FSIEAMVEAYEELYR 365 (365)
T ss_pred -HHhhc---CCEEeCCCCHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHh--CCHHHHHHHHHHHhC
Confidence 12222 2222 35899999999999999999999999988876544 899999999999884
No 99
>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase. Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species.
Probab=99.52 E-value=4.1e-13 Score=149.52 Aligned_cols=208 Identities=15% Similarity=0.138 Sum_probs=156.0
Q ss_pred ccceEEcCCCcc--ccCCCCCCCCCCCCCCCCCCCeEEEecCCC--CcCCHHHHHHHHHHHhHcCC--cEEEEecCCCCC
Q 003891 494 VEELIRLPECFL--CYTPSPEAGPVCPTPALTNGFITFGSFNNL--AKITPKVLQVWARILCAVPN--SRLVVKCKPFCC 567 (788)
Q Consensus 494 ~e~l~~lp~~~~--~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~--~K~~~~~~~~~~~il~~~p~--~~l~l~~~~~~~ 567 (788)
.+++..+|+..- .|.|.+ ........+++++.++|++++++ .|..+.+++++.++++..|+ .+|+++|++...
T Consensus 186 ~~ki~vi~ngvd~~~~~~~~-~~~~~~~~~~~~~~~~i~~~G~l~~~K~~~~li~a~~~l~~~~~~~~~~l~ivG~~~~~ 264 (405)
T TIGR03449 186 PDRIDVVAPGADLERFRPGD-RATERARLGLPLDTKVVAFVGRIQPLKAPDVLLRAVAELLDRDPDRNLRVIVVGGPSGS 264 (405)
T ss_pred hhhEEEECCCcCHHHcCCCc-HHHHHHhcCCCCCCcEEEEecCCCcccCHHHHHHHHHHHHhhCCCcceEEEEEeCCCCC
Confidence 366777776421 122221 11112223455667788888877 79999999999999998887 888988864322
Q ss_pred H-HHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHHHHhcccccEeecCCCC-CCchhHHHHhhhCCceeecCCCccCccch
Q 003891 568 D-SVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVG 645 (788)
Q Consensus 568 ~-~~~~~l~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~~Dv~Ld~~~~-~g~~t~~eal~~GvPvvt~~g~~~~~r~~ 645 (788)
. +..+.+++..++.|+. ++|.|+|.++ .++....|+.+|+++-|+-. +.|.+++|||++|+|||+.......
T Consensus 265 g~~~~~~l~~~~~~~~l~-~~v~~~g~~~-~~~~~~~l~~ad~~v~ps~~E~~g~~~lEAma~G~Pvi~~~~~~~~---- 338 (405)
T TIGR03449 265 GLATPDALIELAAELGIA-DRVRFLPPRP-PEELVHVYRAADVVAVPSYNESFGLVAMEAQACGTPVVAARVGGLP---- 338 (405)
T ss_pred cchHHHHHHHHHHHcCCC-ceEEECCCCC-HHHHHHHHHhCCEEEECCCCCCcChHHHHHHHcCCCEEEecCCCcH----
Confidence 2 4667888899999998 8999999987 68889999999999988855 6789999999999999984322111
Q ss_pred hHHHhhhCCccccc--CCHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHH
Q 003891 646 VSLLTKVGLKHLIA--KNEDEYVQLALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRNMW 713 (788)
Q Consensus 646 ~~~l~~~gl~~~ia--~~~~~y~~~a~~l~~d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ 713 (788)
.++ .-|-.++++ .|.+++.+...++.+|++.++.++++.++... .|+++.+++++++.|.++.
T Consensus 339 -e~i-~~~~~g~~~~~~d~~~la~~i~~~l~~~~~~~~~~~~~~~~~~---~fsw~~~~~~~~~~y~~~~ 403 (405)
T TIGR03449 339 -VAV-ADGETGLLVDGHDPADWADALARLLDDPRTRIRMGAAAVEHAA---GFSWAATADGLLSSYRDAL 403 (405)
T ss_pred -hhh-ccCCceEECCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHH---hCCHHHHHHHHHHHHHHHh
Confidence 111 123344444 48999999999999999999999999887642 3899999999999998764
No 100
>cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=99.51 E-value=2.6e-13 Score=148.84 Aligned_cols=167 Identities=19% Similarity=0.109 Sum_probs=133.3
Q ss_pred eEEEecCC--CCcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHHHHhc
Q 003891 527 ITFGSFNN--LAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAY 604 (788)
Q Consensus 527 ~~f~~~~~--~~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~~~~l~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~ 604 (788)
.+++++++ ..|..+.+++++.++.++.|+.+|+++|.+ +..+.+++.+++.|+. ++|.|.|.++ .++....|
T Consensus 189 ~~i~~~G~~~~~K~~~~li~a~~~l~~~~~~~~l~ivG~g----~~~~~~~~~~~~~~~~-~~v~~~g~~~-~~~l~~~~ 262 (367)
T cd05844 189 PRILFVGRFVEKKGPLLLLEAFARLARRVPEVRLVIIGDG----PLLAALEALARALGLG-GRVTFLGAQP-HAEVRELM 262 (367)
T ss_pred cEEEEEEeeccccChHHHHHHHHHHHHhCCCeEEEEEeCc----hHHHHHHHHHHHcCCC-CeEEECCCCC-HHHHHHHH
Confidence 34555554 489999999999999999999999999976 5667888888999997 8999999987 68889999
Q ss_pred ccccEeecCCC-------CCCchhHHHHhhhCCceeecCCCccCccchhHHHhhhCCccccc--CCHHHHHHHHHHHhcC
Q 003891 605 SLMDISLDTFP-------YAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIA--KNEDEYVQLALQLASD 675 (788)
Q Consensus 605 ~~~Dv~Ld~~~-------~~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l~~~gl~~~ia--~~~~~y~~~a~~l~~d 675 (788)
+.+|+++-|+. .+.|++.+|||++|+|||+-....+.. ++.. |-.+++. .|.+++++...++.+|
T Consensus 263 ~~ad~~v~ps~~~~~~~~E~~~~~~~EA~a~G~PvI~s~~~~~~e-----~i~~-~~~g~~~~~~d~~~l~~~i~~l~~~ 336 (367)
T cd05844 263 RRARIFLQPSVTAPSGDAEGLPVVLLEAQASGVPVVATRHGGIPE-----AVED-GETGLLVPEGDVAALAAALGRLLAD 336 (367)
T ss_pred HhCCEEEECcccCCCCCccCCchHHHHHHHcCCCEEEeCCCCchh-----heec-CCeeEEECCCCHHHHHHHHHHHHcC
Confidence 99999998874 356899999999999999844332222 1111 2223333 4899999999999999
Q ss_pred HHHHHHHHHHHHHHhhcCCCCChHHHHHHHHH
Q 003891 676 VTALANLRMSLRDLMSKSPVCDGQNFALGLES 707 (788)
Q Consensus 676 ~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~ 707 (788)
++.+..++.+.++.+.+ .|+++.++..+++
T Consensus 337 ~~~~~~~~~~a~~~~~~--~~s~~~~~~~l~~ 366 (367)
T cd05844 337 PDLRARMGAAGRRRVEE--RFDLRRQTAKLEA 366 (367)
T ss_pred HHHHHHHHHHHHHHHHH--HCCHHHHHHHHhc
Confidence 99999999998887654 3899999988875
No 101
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.51 E-value=3.9e-13 Score=125.71 Aligned_cols=127 Identities=17% Similarity=0.107 Sum_probs=119.6
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 003891 153 VAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKP 232 (788)
Q Consensus 153 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p 232 (788)
..+++++++.+|++ +..+|.++...|++++|+..|++++..+|.+..++..+|.++...|++++|+..|+++++.+|
T Consensus 13 ~~~~~~al~~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p 89 (144)
T PRK15359 13 EDILKQLLSVDPET---VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDA 89 (144)
T ss_pred HHHHHHHHHcCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 46789999998875 667899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 003891 233 NFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDA 282 (788)
Q Consensus 233 ~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~ 282 (788)
+++.+++++|.++...|++++|+..|+++++..|+++..+.+++.+....
T Consensus 90 ~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~l 139 (144)
T PRK15359 90 SHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIMV 139 (144)
T ss_pred CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999888876543
No 102
>cd03813 GT1_like_3 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.50 E-value=4.2e-13 Score=151.90 Aligned_cols=173 Identities=15% Similarity=0.131 Sum_probs=140.6
Q ss_pred CCCeEEEecCCC--CcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHHH
Q 003891 524 NGFITFGSFNNL--AKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHM 601 (788)
Q Consensus 524 ~~~~~f~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~~~~l~~~~~~~gi~~~rv~~~~~~~~~~~~~ 601 (788)
.+.++++.++++ .|..+.+++++..+.+..|+.+|+++|.+...+...+.+++.+++.|+. ++|.|+|. .+..
T Consensus 291 ~~~~~i~~vGrl~~~Kg~~~li~a~~~l~~~~p~~~l~IvG~g~~~~~~~~e~~~li~~l~l~-~~V~f~G~----~~v~ 365 (475)
T cd03813 291 KEPPVVGLIGRVVPIKDIKTFIRAAAIVRKKIPDAEGWVIGPTDEDPEYAEECRELVESLGLE-DNVKFTGF----QNVK 365 (475)
T ss_pred CCCcEEEEEeccccccCHHHHHHHHHHHHHhCCCeEEEEECCCCcChHHHHHHHHHHHHhCCC-CeEEEcCC----ccHH
Confidence 445678888876 7889999999999999999999999997644556778889999999998 89999993 4566
Q ss_pred HhcccccEeecCCCC-CCchhHHHHhhhCCceeecCCCccCccchh--HHHhh-----hCCcccc--cCCHHHHHHHHHH
Q 003891 602 QAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGV--SLLTK-----VGLKHLI--AKNEDEYVQLALQ 671 (788)
Q Consensus 602 ~~~~~~Dv~Ld~~~~-~g~~t~~eal~~GvPvvt~~g~~~~~r~~~--~~l~~-----~gl~~~i--a~~~~~y~~~a~~ 671 (788)
..|+.+|+++-|+.. +.+++++|||++|+|||+- .+|+ .++.. +|-.+++ ..|++++++...+
T Consensus 366 ~~l~~aDv~vlpS~~Eg~p~~vlEAma~G~PVVat-------d~g~~~elv~~~~~~~~g~~G~lv~~~d~~~la~ai~~ 438 (475)
T cd03813 366 EYLPKLDVLVLTSISEGQPLVILEAMAAGIPVVAT-------DVGSCRELIEGADDEALGPAGEVVPPADPEALARAILR 438 (475)
T ss_pred HHHHhCCEEEeCchhhcCChHHHHHHHcCCCEEEC-------CCCChHHHhcCCcccccCCceEEECCCCHHHHHHHHHH
Confidence 778889999999866 7799999999999999983 3332 12222 1334444 3589999999999
Q ss_pred HhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHH
Q 003891 672 LASDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYR 710 (788)
Q Consensus 672 l~~d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~ 710 (788)
+.+|++.++.++++.++++.+. |+.+.++.++++.|+
T Consensus 439 ll~~~~~~~~~~~~a~~~v~~~--~s~~~~~~~y~~lY~ 475 (475)
T cd03813 439 LLKDPELRRAMGEAGRKRVERY--YTLERMIDSYRRLYL 475 (475)
T ss_pred HhcCHHHHHHHHHHHHHHHHHh--CCHHHHHHHHHHHhC
Confidence 9999999999999999887644 889999999999884
No 103
>PRK15484 lipopolysaccharide 1,2-N-acetylglucosaminetransferase; Provisional
Probab=99.50 E-value=7.2e-13 Score=145.71 Aligned_cols=180 Identities=14% Similarity=0.147 Sum_probs=135.9
Q ss_pred CCCCCCCeEEEecCCC--CcCCHHHHHHHHHHHhHcCCcEEEEecCCCCC-----HHHHHHHHHHHHHcCCCCCcEEEcC
Q 003891 520 PALTNGFITFGSFNNL--AKITPKVLQVWARILCAVPNSRLVVKCKPFCC-----DSVRHRFLSTLEQLGLESLRVDLLP 592 (788)
Q Consensus 520 ~~~~~~~~~f~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~-----~~~~~~l~~~~~~~gi~~~rv~~~~ 592 (788)
.+++.+..++++++++ .|..+.++++|.++.+..|+.+|+++|.+... ....+.+++.+.+.| +++.|+|
T Consensus 187 ~~~~~~~~~il~~Grl~~~Kg~~~Li~A~~~l~~~~p~~~lvivG~g~~~~~~~~~~~~~~l~~~~~~l~---~~v~~~G 263 (380)
T PRK15484 187 LNISPDETVLLYAGRISPDKGILLLMQAFEKLATAHSNLKLVVVGDPTASSKGEKAAYQKKVLEAAKRIG---DRCIMLG 263 (380)
T ss_pred hCCCCCCeEEEEeccCccccCHHHHHHHHHHHHHhCCCeEEEEEeCCccccccchhHHHHHHHHHHHhcC---CcEEEeC
Confidence 3455556677777765 89999999999999999999999999976321 123445555555554 5799999
Q ss_pred CcCCcHHHHHhcccccEeecCCCC--CCchhHHHHhhhCCceeecCCCccCccchhHHHhhhCCccc-c--cCCHHHHHH
Q 003891 593 LILLNHDHMQAYSLMDISLDTFPY--AGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHL-I--AKNEDEYVQ 667 (788)
Q Consensus 593 ~~~~~~~~~~~~~~~Dv~Ld~~~~--~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l~~~gl~~~-i--a~~~~~y~~ 667 (788)
.++ .++....|+.+|+++-|+.+ +.+.+.+|||++|+|||+.....+.. ++ .-|..++ + ..|.+++.+
T Consensus 264 ~~~-~~~l~~~~~~aDv~v~pS~~~E~f~~~~lEAma~G~PVI~s~~gg~~E-----iv-~~~~~G~~l~~~~d~~~la~ 336 (380)
T PRK15484 264 GQP-PEKMHNYYPLADLVVVPSQVEEAFCMVAVEAMAAGKPVLASTKGGITE-----FV-LEGITGYHLAEPMTSDSIIS 336 (380)
T ss_pred CCC-HHHHHHHHHhCCEEEeCCCCccccccHHHHHHHcCCCEEEeCCCCcHh-----hc-ccCCceEEEeCCCCHHHHHH
Confidence 986 68889999999999998864 45889999999999999843221111 11 1144444 3 358999999
Q ss_pred HHHHHhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHH
Q 003891 668 LALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRNM 712 (788)
Q Consensus 668 ~a~~l~~d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ 712 (788)
...++.+|++. .+++++.++...+. |+++.+++++++.|.+.
T Consensus 337 ~I~~ll~d~~~-~~~~~~ar~~~~~~--fsw~~~a~~~~~~l~~~ 378 (380)
T PRK15484 337 DINRTLADPEL-TQIAEQAKDFVFSK--YSWEGVTQRFEEQIHNW 378 (380)
T ss_pred HHHHHHcCHHH-HHHHHHHHHHHHHh--CCHHHHHHHHHHHHHHh
Confidence 99999999985 67888888776544 99999999999999764
No 104
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.50 E-value=6e-13 Score=146.21 Aligned_cols=176 Identities=18% Similarity=0.187 Sum_probs=138.7
Q ss_pred CCCCCCCeEEEecCCC--CcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCc
Q 003891 520 PALTNGFITFGSFNNL--AKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLN 597 (788)
Q Consensus 520 ~~~~~~~~~f~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~~~~l~~~~~~~gi~~~rv~~~~~~~~~ 597 (788)
.+++++..++++++++ .|....++++|.++..+ ++.+|+++|.+ +....+++.+++.|+. ++|.|.|..+
T Consensus 191 ~~~~~~~~~il~~g~l~~~K~~~~li~a~~~l~~~-~~~~l~i~G~g----~~~~~~~~~~~~~~~~-~~v~~~g~~~-- 262 (371)
T cd04962 191 LGAPEGEKVLIHISNFRPVKRIDDVIRIFAKVRKE-VPARLLLVGDG----PERSPAERLARELGLQ-DDVLFLGKQD-- 262 (371)
T ss_pred cCCCCCCeEEEEecccccccCHHHHHHHHHHHHhc-CCceEEEEcCC----cCHHHHHHHHHHcCCC-ceEEEecCcc--
Confidence 3455667778888876 89999999999988765 56899999877 3456778888889997 8999999753
Q ss_pred HHHHHhcccccEeecCCCC-CCchhHHHHhhhCCceeecCCCccCccchhHHHhhhCCccccc--CCHHHHHHHHHHHhc
Q 003891 598 HDHMQAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIA--KNEDEYVQLALQLAS 674 (788)
Q Consensus 598 ~~~~~~~~~~Dv~Ld~~~~-~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l~~~gl~~~ia--~~~~~y~~~a~~l~~ 674 (788)
+....|..+|+++-|+.+ +.|.+++|||++|+|||+.....+.. ++. -|..+++. .|.+++++....+.+
T Consensus 263 -~~~~~~~~~d~~v~ps~~E~~~~~~~EAma~g~PvI~s~~~~~~e-----~i~-~~~~G~~~~~~~~~~l~~~i~~l~~ 335 (371)
T cd04962 263 -HVEELLSIADLFLLPSEKESFGLAALEAMACGVPVVASNAGGIPE-----VVK-HGETGFLVDVGDVEAMAEYALSLLE 335 (371)
T ss_pred -cHHHHHHhcCEEEeCCCcCCCccHHHHHHHcCCCEEEeCCCCchh-----hhc-CCCceEEcCCCCHHHHHHHHHHHHh
Confidence 566778889999999976 66999999999999999854332222 111 13344444 389999999999999
Q ss_pred CHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHH
Q 003891 675 DVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRNM 712 (788)
Q Consensus 675 d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ 712 (788)
|++.+..|+++.++...+. |+++.++.++++.|+++
T Consensus 336 ~~~~~~~~~~~~~~~~~~~--fs~~~~~~~~~~~y~~~ 371 (371)
T cd04962 336 DDELWQEFSRAARNRAAER--FDSERIVPQYEALYRRL 371 (371)
T ss_pred CHHHHHHHHHHHHHHHHHh--CCHHHHHHHHHHHHHhC
Confidence 9999999999998875433 89999999999999863
No 105
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.49 E-value=1.4e-10 Score=119.34 Aligned_cols=296 Identities=15% Similarity=0.016 Sum_probs=196.2
Q ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Q 003891 22 CLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPM-YAEAYCNMGV 100 (788)
Q Consensus 22 ~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~-~~~~~~~la~ 100 (788)
..+.....-|..-+..|+|.+|++...+.-+..+...-++..-+....+.|+++.|-.++.++-+..++ ...+....+.
T Consensus 82 rra~~~~~egl~~l~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrar 161 (400)
T COG3071 82 RRARKALNEGLLKLFEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRAR 161 (400)
T ss_pred HHHHHHHHHHHHHHhcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHH
Confidence 345566677888888999999999999988877777778888889999999999999999999988443 4567888999
Q ss_pred HHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHhCCCCHH-H--HHHHHH--
Q 003891 101 IYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYAD-A--MYNLGV-- 175 (788)
Q Consensus 101 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~-~--~~~la~-- 175 (788)
+....|++..|.....++++..|.++........+|.. .|++.+...+..+.-+..--+.+ . +-+.+.
T Consensus 162 lll~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~-------~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~g 234 (400)
T COG3071 162 LLLNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIR-------LGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEG 234 (400)
T ss_pred HHHhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHH-------hccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHH
Confidence 99999999999999999999999998776655555555 45888877777766654322211 1 111111
Q ss_pred HHHHcCChHHH---HHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHH
Q 003891 176 AYGEMLKFDMA---IVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMD 252 (788)
Q Consensus 176 ~~~~~g~~~~A---~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 252 (788)
++.+..+-+.+ ..+++..-..-..++.....++.-+...|+.++|.+..+++++..-+.. ....++ ...-++..
T Consensus 235 lL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~-L~~~~~--~l~~~d~~ 311 (400)
T COG3071 235 LLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR-LCRLIP--RLRPGDPE 311 (400)
T ss_pred HHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh-HHHHHh--hcCCCCch
Confidence 11111111111 1223222222233466666667777777777777777777776543322 111111 23456666
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhhHHhHHHHhhhccCCCchHHHHHHHH
Q 003891 253 AAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHRD 330 (788)
Q Consensus 253 eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~a~~~~lla~~~l~~g~~~~~~~~~~~ 330 (788)
.=++..++.++..|+++..+..||.++.+.+.+.+|.++|+.+++..|+..+ ...++..+...|+.+++-+..++
T Consensus 312 ~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~---~~~la~~~~~~g~~~~A~~~r~e 386 (400)
T COG3071 312 PLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPSASD---YAELADALDQLGEPEEAEQVRRE 386 (400)
T ss_pred HHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhh---HHHHHHHHHHcCChHHHHHHHHH
Confidence 6677777777777777777777777777777777777777777777665433 23456666666666655554443
No 106
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.49 E-value=6.6e-11 Score=131.88 Aligned_cols=296 Identities=15% Similarity=0.119 Sum_probs=203.7
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 003891 25 IVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKN 104 (788)
Q Consensus 25 ~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~ 104 (788)
+++.....++...|++++|++.+++..+.-.+....+-..|.++.++|++++|...|...++.+|++...+..+..+...
T Consensus 5 E~lLY~~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~ 84 (517)
T PF12569_consen 5 ELLLYKNSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGL 84 (517)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhh
Confidence 44666778889999999999999998888889999999999999999999999999999999999999999999988844
Q ss_pred CC-----CHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhcCCHHH-HHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 003891 105 RG-----DLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQ-GVAYYKKALYYNWHYADAMYNLGVAYG 178 (788)
Q Consensus 105 ~g-----~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~g~~~~-A~~~~~~al~~~p~~~~~~~~la~~~~ 178 (788)
.. +.+.-.+.|++.....|....... +...+. -| ..+.+ +..++...+.. .-+....++-.+|.
T Consensus 85 ~~~~~~~~~~~~~~~y~~l~~~yp~s~~~~r-l~L~~~-~g------~~F~~~~~~yl~~~l~K--gvPslF~~lk~Ly~ 154 (517)
T PF12569_consen 85 QLQLSDEDVEKLLELYDELAEKYPRSDAPRR-LPLDFL-EG------DEFKERLDEYLRPQLRK--GVPSLFSNLKPLYK 154 (517)
T ss_pred hcccccccHHHHHHHHHHHHHhCccccchhH-hhcccC-CH------HHHHHHHHHHHHHHHhc--CCchHHHHHHHHHc
Confidence 33 567778889888888887542211 110000 01 12322 33344444432 34455555555554
Q ss_pred HcCChHHHHHHHHHHHhc---------------CCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 003891 179 EMLKFDMAIVFYELAFHF---------------NPHC--AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNL 241 (788)
Q Consensus 179 ~~g~~~~A~~~~~~al~~---------------~p~~--~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l 241 (788)
...+.+-...++...... .|.. ..+++.++..|...|++++|+++.+++|+..|..++.+...
T Consensus 155 d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~K 234 (517)
T PF12569_consen 155 DPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTK 234 (517)
T ss_pred ChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence 333333222333322211 0111 24567778888888888888888888888888888888888
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChh-------hHHhHHHHhh
Q 003891 242 GVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRN-------AGQNRLLAMN 314 (788)
Q Consensus 242 a~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~-------a~~~~lla~~ 314 (788)
|.++...|++.+|.+.++.+..++..+-.+....+..+.+.|+.++|.+.+....+-+-+... .|+..-.+.+
T Consensus 235 arilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a 314 (517)
T PF12569_consen 235 ARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEA 314 (517)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHH
Confidence 888888888888888888888888888877788888888888888888887776554421111 2222233555
Q ss_pred hccCCCchHHHHHHHH
Q 003891 315 YINEGHDDKLFEAHRD 330 (788)
Q Consensus 315 ~l~~g~~~~~~~~~~~ 330 (788)
|...|+...++.....
T Consensus 315 ~~r~~~~~~ALk~~~~ 330 (517)
T PF12569_consen 315 YLRQGDYGLALKRFHA 330 (517)
T ss_pred HHHHhhHHHHHHHHHH
Confidence 5566665555544333
No 107
>PLN03077 Protein ECB2; Provisional
Probab=99.49 E-value=3.2e-11 Score=147.02 Aligned_cols=282 Identities=13% Similarity=0.093 Sum_probs=130.4
Q ss_pred HHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHH
Q 003891 33 SLKLAGNTQDGIQKYYEALKID-PHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESA 111 (788)
Q Consensus 33 ~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g~~~~A 111 (788)
.+...|+.+.|.+.+..+++.. ..+...+..+...|.+.|++++|.+.|++... .+...|..+...|.+.|++++|
T Consensus 297 a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~---~d~~s~n~li~~~~~~g~~~~A 373 (857)
T PLN03077 297 ACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET---KDAVSWTAMISGYEKNGLPDKA 373 (857)
T ss_pred HHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCC---CCeeeHHHHHHHHHhCCCHHHH
Confidence 3344455555555555554432 22344555555555555555555555554321 2334455555555555555555
Q ss_pred HHHHHHHHhhC--CCcHHHHHHH----------------------------HHHHHHhhhhhhhcCCHHHHHHHHHHHHH
Q 003891 112 IACYERCLAVS--PNFEIAKNNM----------------------------AIALTDLGTKVKLEGDINQGVAYYKKALY 161 (788)
Q Consensus 112 ~~~~~~al~~~--p~~~~~~~~l----------------------------a~~l~~lg~~~~~~g~~~~A~~~~~~al~ 161 (788)
++.|++..+.. |+... +..+ ..++..+-..|.+.|++++|.+.|++..+
T Consensus 374 ~~lf~~M~~~g~~Pd~~t-~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~ 452 (857)
T PLN03077 374 LETYALMEQDNVSPDEIT-IASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE 452 (857)
T ss_pred HHHHHHHHHhCCCCCcee-HHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC
Confidence 55555543322 32211 0000 11222333444455566666666555432
Q ss_pred hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHH-----------------------------------HH
Q 003891 162 YNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEAC-----------------------------------NN 206 (788)
Q Consensus 162 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~-----------------------------------~~ 206 (788)
.+...|..+...|...|+.++|+..|++.....+.+...+ ..
T Consensus 453 ---~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~na 529 (857)
T PLN03077 453 ---KDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNA 529 (857)
T ss_pred ---CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechH
Confidence 2334455555555566666666666655543211111111 12
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCC
Q 003891 207 LGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAA--NPTYAEAYNNLGVLYRDAGS 284 (788)
Q Consensus 207 la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~--~p~~~~~~~~la~~~~~~g~ 284 (788)
+...|.+.|+.++|.+.|++. +.+...|..+...|.+.|+.++|++.|++..+. .|+ ...+..+-..+.+.|+
T Consensus 530 Li~~y~k~G~~~~A~~~f~~~----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd-~~T~~~ll~a~~~~g~ 604 (857)
T PLN03077 530 LLDLYVRCGRMNYAWNQFNSH----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPD-EVTFISLLCACSRSGM 604 (857)
T ss_pred HHHHHHHcCCHHHHHHHHHhc----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-cccHHHHHHHHhhcCh
Confidence 224444455555555555443 334445555555555555555555555555443 232 2334444445555555
Q ss_pred HHHHHHHHHHHHhhCCCChhhHHhHHHHhhhccCCCchHHHH
Q 003891 285 ISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFE 326 (788)
Q Consensus 285 ~~eA~~~~~~al~l~p~~~~a~~~~lla~~~l~~g~~~~~~~ 326 (788)
.++|.++|+...+..+-.++....-.+...+...|..+++.+
T Consensus 605 v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~ 646 (857)
T PLN03077 605 VTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYN 646 (857)
T ss_pred HHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHH
Confidence 555555555554332222222222233334444555444443
No 108
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases. capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1).
Probab=99.48 E-value=1.7e-12 Score=141.79 Aligned_cols=315 Identities=15% Similarity=0.136 Sum_probs=186.9
Q ss_pred EeeccCCcccChhHHhhhhhhcccCCCceEEEEEeccccCChhhHHHHHHHhhhCCeEEEccCC--C----HHHHHHHHH
Q 003891 357 IGYVSPDYFTHSVSYFIEAPLVYHDYQNYKVVVYSAVVKADAKTIRFREKVMKKGGIWRDIYGI--D----EKKVAAMVR 430 (788)
Q Consensus 357 iGyvS~df~~H~v~~~~~~~l~~~dr~~fev~~Y~~~~~~D~~t~~~r~~~~~~~~~~~~~~~~--~----~~~~a~~i~ 430 (788)
|-++.+++..=-+...+..+.+.+...+++|++++...........+.. ....+..+... . ...+.+.++
T Consensus 2 Il~~~~~~~~GG~~~~~~~l~~~L~~~~~~v~~i~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (358)
T cd03812 2 ILHIVGTMNRGGIETFIMNYYRNLDRSKIQFDFLVTSKEEGDYDDEIEK----LGGKIYYIPARKKNPLKYFKKLYKLIK 77 (358)
T ss_pred EEEEeCCCCCccHHHHHHHHHHhcCccceEEEEEEeCCCCcchHHHHHH----cCCeEEEecCCCccHHHHHHHHHHHHh
Confidence 4556665532234456666777777788999988876543222222222 11222222211 1 134566678
Q ss_pred hCCCcEEEeCCCCCCCCcccccc-cCCCCeEEec-ccCCCCCCCCCc----------cEEEecCCCCCcCc--cC----C
Q 003891 431 EDKIDILVELTGHTANNKLGMMA-CQPAPVQVTW-IGYPNTTGLPTI----------DYRITDSLADPPET--KQ----K 492 (788)
Q Consensus 431 ~d~idilvdl~g~t~~~~~~~~a-~r~Apvq~~~-~g~~~ttg~~~~----------Dy~i~d~~~~p~~~--~~----~ 492 (788)
..++||++-...... .-..+++ ....|+-+.+ .+...+...... -+..+|.++.+... +. .
T Consensus 78 ~~~~Dvv~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~~~~~~~~~~ 156 (358)
T cd03812 78 KNKYDIVHVHGSSAS-GFILLAAKKAGVKVRIAHSHNTSDSHDKKKKILKYKVLRKLINRLATDYLACSEEAGKWLFGKV 156 (358)
T ss_pred cCCCCEEEEeCcchh-HHHHHHHhhCCCCeEEEEeccccccccccchhhHHHHHHHHHHhcCCEEEEcCHHHHHHHHhCC
Confidence 899999975443321 1111122 1234443332 111111110000 01112222222221 11 1
Q ss_pred CccceEEcCCCccc--cCCCCCCCCCCCCCCCCCCCeEEEecCCC--CcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCH
Q 003891 493 HVEELIRLPECFLC--YTPSPEAGPVCPTPALTNGFITFGSFNNL--AKITPKVLQVWARILCAVPNSRLVVKCKPFCCD 568 (788)
Q Consensus 493 ~~e~l~~lp~~~~~--~~~~~~~~~~~~~~~~~~~~~~f~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~ 568 (788)
..+++..+|+..-. |.+.+............++.+++++++++ .|..+.+++++.++....|+.+++++|.+
T Consensus 157 ~~~~~~vi~ngvd~~~~~~~~~~~~~~~~~~~~~~~~~i~~vGr~~~~Kg~~~li~a~~~l~~~~~~~~l~ivG~g---- 232 (358)
T cd03812 157 KNKKFKVIPNGIDLEKFIFNEEIRKKRRELGILEDKFVIGHVGRFSEQKNHEFLIEIFAELLKKNPNAKLLLVGDG---- 232 (358)
T ss_pred CcccEEEEeccCcHHHcCCCchhhhHHHHcCCCCCCEEEEEEeccccccChHHHHHHHHHHHHhCCCeEEEEEeCC----
Confidence 23566666653210 11111110001112345677888888876 89999999999999999999999999977
Q ss_pred HHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHHHHhcccccEeecCCCC-CCchhHHHHhhhCCceeecCCCccCccchhH
Q 003891 569 SVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGVS 647 (788)
Q Consensus 569 ~~~~~l~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~~Dv~Ld~~~~-~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~ 647 (788)
+....+++.+++.|+. ++|.|.|. .++....|+.||+++-|+-+ +.+.+.+|||++|+|||+-.......
T Consensus 233 ~~~~~~~~~~~~~~~~-~~v~~~g~---~~~~~~~~~~adi~v~ps~~E~~~~~~lEAma~G~PvI~s~~~~~~~----- 303 (358)
T cd03812 233 ELEEEIKKKVKELGLE-DKVIFLGV---RNDVPELLQAMDVFLFPSLYEGLPLVLIEAQASGLPCILSDTITKEV----- 303 (358)
T ss_pred chHHHHHHHHHhcCCC-CcEEEecc---cCCHHHHHHhcCEEEecccccCCCHHHHHHHHhCCCEEEEcCCchhh-----
Confidence 5567788888889998 89999998 34677788999999999866 67999999999999999844332221
Q ss_pred HHhhhCCccccc-CCHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Q 003891 648 LLTKVGLKHLIA-KNEDEYVQLALQLASDVTALANLRMSLRDLM 690 (788)
Q Consensus 648 ~l~~~gl~~~ia-~~~~~y~~~a~~l~~d~~~~~~~r~~~~~~~ 690 (788)
++.. +..-+.. .+++++.+...++.+|++.++.++...+...
T Consensus 304 ~i~~-~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~~~~~~~~~~ 346 (358)
T cd03812 304 DLTD-LVKFLSLDESPEIWAEEILKLKSEDRRERSSESIKKKGL 346 (358)
T ss_pred hhcc-CccEEeCCCCHHHHHHHHHHHHhCcchhhhhhhhhhccc
Confidence 1222 3333333 3569999999999999998888877665443
No 109
>cd03806 GT1_ALG11_like This family is most closely related to the GT1 family of glycosyltransferases. ALG11 in yeast is involved in adding the final 1,2-linked Man to the Man5GlcNAc2-PP-Dol synthesized on the cytosolic face of the ER. The deletion analysis of ALG11 was shown to block the early steps of core biosynthesis that takes place on the cytoplasmic face of the ER and lead to a defect in the assembly of lipid-linked oligosaccharides.
Probab=99.48 E-value=2.4e-13 Score=151.20 Aligned_cols=170 Identities=17% Similarity=0.152 Sum_probs=127.7
Q ss_pred CCCeEEEecCCC--CcCCHHHHHHHHHHHhHcCC-----cEEEEecCCCCC--HHHHHHHHHHHHHcCCCCCcEEEcCCc
Q 003891 524 NGFITFGSFNNL--AKITPKVLQVWARILCAVPN-----SRLVVKCKPFCC--DSVRHRFLSTLEQLGLESLRVDLLPLI 594 (788)
Q Consensus 524 ~~~~~f~~~~~~--~K~~~~~~~~~~~il~~~p~-----~~l~l~~~~~~~--~~~~~~l~~~~~~~gi~~~rv~~~~~~ 594 (788)
.+..+|++++++ .|.....+++|.++.+..|+ .+|+++|++... ....+.|++..+++|++ ++|.|+|.+
T Consensus 235 ~~~~~il~vgr~~~~K~~~~li~A~~~l~~~~~~~~~~~~~lvivG~~~~~~~~~~~~~L~~~~~~l~l~-~~V~f~g~v 313 (419)
T cd03806 235 TRENQILSIAQFRPEKNHPLQLRAFAKLLKRLPEEIKEKIKLVLIGSCRNEDDEKRVEDLKLLAKELGLE-DKVEFVVNA 313 (419)
T ss_pred cCCcEEEEEEeecCCCCHHHHHHHHHHHHHhCcccccCceEEEEEcCCCCcccHHHHHHHHHHHHHhCCC-CeEEEecCC
Confidence 345677788855 89999999999999988765 899999876432 24667888889999998 899999998
Q ss_pred CCcHHHHHhcccccEeecCCCC-CCchhHHHHhhhCCceeecC-CCccCccchhHHHh--hhCCcccccCCHHHHHHHHH
Q 003891 595 LLNHDHMQAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMA-GSVHAHNVGVSLLT--KVGLKHLIAKNEDEYVQLAL 670 (788)
Q Consensus 595 ~~~~~~~~~~~~~Dv~Ld~~~~-~g~~t~~eal~~GvPvvt~~-g~~~~~r~~~~~l~--~~gl~~~ia~~~~~y~~~a~ 670 (788)
+ .++....|+.+|++|-|+.. +.|.+.+|||++|+|||+.. |..... +.. .-|-.++++.|++++++...
T Consensus 314 ~-~~~l~~~l~~adv~v~~s~~E~Fgi~~lEAMa~G~pvIa~~~ggp~~~-----iv~~~~~g~~G~l~~d~~~la~ai~ 387 (419)
T cd03806 314 P-FEELLEELSTASIGLHTMWNEHFGIGVVEYMAAGLIPLAHASGGPLLD-----IVVPWDGGPTGFLASTAEEYAEAIE 387 (419)
T ss_pred C-HHHHHHHHHhCeEEEECCccCCcccHHHHHHHcCCcEEEEcCCCCchh-----eeeccCCCCceEEeCCHHHHHHHHH
Confidence 7 78999999999999998855 77999999999999999744 211111 111 02556677789999999999
Q ss_pred HHhcCHHH-HHHHHHHHHHHhhcCCCCChHHHHH
Q 003891 671 QLASDVTA-LANLRMSLRDLMSKSPVCDGQNFAL 703 (788)
Q Consensus 671 ~l~~d~~~-~~~~r~~~~~~~~~~~~~~~~~~~~ 703 (788)
++.++++. ++.+++. +.+.. ..|+.+.|.+
T Consensus 388 ~ll~~~~~~~~~~~~~-~~~~~--~~fs~~~f~~ 418 (419)
T cd03806 388 KILSLSEEERLRIRRA-ARSSV--KRFSDEEFER 418 (419)
T ss_pred HHHhCCHHHHHHHHHH-HHHHH--HhhCHHHhcc
Confidence 99997654 4444433 33333 3378887753
No 110
>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.
Probab=99.48 E-value=1.5e-12 Score=140.68 Aligned_cols=319 Identities=14% Similarity=0.082 Sum_probs=191.1
Q ss_pred eEeeccCCcccChhHHhhhhhhcccCCCceEEEEEeccccCChhhHHHHHH-HhhhCCeEEEc--cCCCHHHHHHHHHhC
Q 003891 356 VIGYVSPDYFTHSVSYFIEAPLVYHDYQNYKVVVYSAVVKADAKTIRFREK-VMKKGGIWRDI--YGIDEKKVAAMVRED 432 (788)
Q Consensus 356 riGyvS~df~~H~v~~~~~~~l~~~dr~~fev~~Y~~~~~~D~~t~~~r~~-~~~~~~~~~~~--~~~~~~~~a~~i~~d 432 (788)
||.+++..+...-+...+..+.+.+...+++|.++................ ........... .......+.+.|+..
T Consensus 1 kIl~~~~~~~~gG~~~~~~~l~~~l~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (353)
T cd03811 1 KILFVIPSLGGGGAERVLLNLANGLDKRGYDVTLVVLRDEGDYLELLPSNVKLIPVRVLKLKSLRDLLAILRLRRLLRKE 80 (353)
T ss_pred CeEEEeecccCCCcchhHHHHHHHHHhcCceEEEEEcCCCCccccccccchhhhceeeeecccccchhHHHHHHHHHHhc
Confidence 456677766544455556667777777889999887665432211100000 00000000000 111235788889999
Q ss_pred CCcEEEeCCCCCCCCcccccccCC-CCeEEecccCCCCCC-------------CCCccEEEecCCCCCcCccCCC---cc
Q 003891 433 KIDILVELTGHTANNKLGMMACQP-APVQVTWIGYPNTTG-------------LPTIDYRITDSLADPPETKQKH---VE 495 (788)
Q Consensus 433 ~idilvdl~g~t~~~~~~~~a~r~-Apvq~~~~g~~~ttg-------------~~~~Dy~i~d~~~~p~~~~~~~---~e 495 (788)
++||++-... ....-+..+..+. .|+-+...+...... +...|.+++..-..-......| .+
T Consensus 81 ~~dii~~~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~~~~~~~ 159 (353)
T cd03811 81 KPDVVISHLT-TTPNVLALLAARLGTKLIVWEHNSLSLELKRKLRLLLLIRKLYRRADKIVAVSEGVKEDLLKLLGIPPD 159 (353)
T ss_pred CCCEEEEcCc-cchhHHHHHHhhcCCceEEEEcCcchhhhccchhHHHHHHhhccccceEEEeccchhhhHHHhhcCCcc
Confidence 9999987655 2222222222221 344333333322211 1345666653222222223333 36
Q ss_pred ceEEcCCCccccCCCCCCCCCCCCCCCCCCCeEEEecCCC--CcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHH
Q 003891 496 ELIRLPECFLCYTPSPEAGPVCPTPALTNGFITFGSFNNL--AKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHR 573 (788)
Q Consensus 496 ~l~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~~~~ 573 (788)
++..+|+..- ................+++.++|+++++. .|..+.++++|.++....|+.+|+++|.+ +....
T Consensus 160 ~~~vi~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~k~~~~~i~~~~~l~~~~~~~~l~i~G~~----~~~~~ 234 (353)
T cd03811 160 KIEVIYNPID-IEEIRALAEEPLELGIPPDGPVILAVGRLSPQKGFDTLIRAFALLRKEGPDARLVILGDG----PLREE 234 (353)
T ss_pred ccEEecCCcC-hhhcCcccchhhhcCCCCCceEEEEEecchhhcChHHHHHHHHHhhhcCCCceEEEEcCC----ccHHH
Confidence 7777775421 11110000000012445677888888876 79999999999999988899999999876 45566
Q ss_pred HHHHHHHcCCCCCcEEEcCCcCCcHHHHHhcccccEeecCCCC-CCchhHHHHhhhCCceeecCCCccCccchhHHHhhh
Q 003891 574 FLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKV 652 (788)
Q Consensus 574 l~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~~Dv~Ld~~~~-~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l~~~ 652 (788)
+.+.....|+. ++|.|.|..+ +....|+.+|+++.|+.+ +.+++++|||++|+|||+........ ++. -
T Consensus 235 ~~~~~~~~~~~-~~v~~~g~~~---~~~~~~~~~d~~i~ps~~e~~~~~~~Ea~~~G~PvI~~~~~~~~e-----~i~-~ 304 (353)
T cd03811 235 LEALAKELGLA-DRVHFLGFQS---NPYPYLKAADLFVLSSRYEGFPNVLLEAMALGTPVVATDCPGPRE-----ILE-D 304 (353)
T ss_pred HHHHHHhcCCC-ccEEEecccC---CHHHHHHhCCEEEeCcccCCCCcHHHHHHHhCCCEEEcCCCChHH-----Hhc-C
Confidence 77888888987 8999999854 466788889999999987 66899999999999999843322211 111 1
Q ss_pred CCccccc--CCHHHH---HHHHHHHhcCHHHHHHHHHHHHHHh
Q 003891 653 GLKHLIA--KNEDEY---VQLALQLASDVTALANLRMSLRDLM 690 (788)
Q Consensus 653 gl~~~ia--~~~~~y---~~~a~~l~~d~~~~~~~r~~~~~~~ 690 (788)
|-.+++. .+.+++ ++....+..|++.+++++...++..
T Consensus 305 ~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 347 (353)
T cd03811 305 GENGLLVPVGDEAALAAAALALLDLLLDPELRERLAAAARERV 347 (353)
T ss_pred CCceEEECCCCHHHHHHHHHHHHhccCChHHHHHHHHHHHHHH
Confidence 3334443 456666 7788888889988888888655544
No 111
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=99.47 E-value=1.2e-12 Score=145.22 Aligned_cols=204 Identities=16% Similarity=0.118 Sum_probs=140.1
Q ss_pred CCccceEEcCCCccc--cCCCCCCCC-CCCCCCCCCCCeEEEecCC---CCcCCHHHHHHHHHHHhHcCCcEEEEecCCC
Q 003891 492 KHVEELIRLPECFLC--YTPSPEAGP-VCPTPALTNGFITFGSFNN---LAKITPKVLQVWARILCAVPNSRLVVKCKPF 565 (788)
Q Consensus 492 ~~~e~l~~lp~~~~~--~~~~~~~~~-~~~~~~~~~~~~~f~~~~~---~~K~~~~~~~~~~~il~~~p~~~l~l~~~~~ 565 (788)
.|.+++..+|+..-. |.|.+.... ......++.+.++++.++| ..|..+.+++++.++.+..|+.+|+++|++.
T Consensus 174 ~~~~ki~vI~ngvd~~~f~~~~~~~~~~~~~~~~~~~~~~i~~vgR~l~~~Kg~~~ll~a~~~l~~~~~~~~lvivG~~~ 253 (396)
T cd03818 174 ELRSRISVIHDGIDTDRLRPDPQARLRLPNGRVLTPGDEVITFVARNLEPYRGFHVFMRALPRLLRARPDARVVIVGGDG 253 (396)
T ss_pred hhccceEEeCCCccccccCCCchhhhcccccccCCCCCeEEEEECCCcccccCHHHHHHHHHHHHHHCCCcEEEEEcCCC
Confidence 345788888864311 222221111 1111223445556666665 3899999999999999999999999998631
Q ss_pred C--------CHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHHHHhcccccEeecCC-CCCCchhHHHHhhhCCceeecC
Q 003891 566 C--------CDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTF-PYAGTTTTCESLYMGVPCVTMA 636 (788)
Q Consensus 566 ~--------~~~~~~~l~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~~Dv~Ld~~-~~~g~~t~~eal~~GvPvvt~~ 636 (788)
. .+..++.+.+.+.... ..++|.|+|.++ .++....|+.+|+++-|+ |++.+.+++|||+||+|||+-.
T Consensus 254 ~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~V~f~G~v~-~~~~~~~l~~adv~v~~s~~e~~~~~llEAmA~G~PVIas~ 331 (396)
T cd03818 254 VSYGAPPPDGESWKQHMLDELGGRL-DLSRVHFLGRVP-YDQYLALLQVSDVHVYLTYPFVLSWSLLEAMACGCLVVGSD 331 (396)
T ss_pred cccCCCCCCcccHHHHHHHHhhccc-CcceEEEeCCCC-HHHHHHHHHhCcEEEEcCcccccchHHHHHHHCCCCEEEcC
Confidence 0 1113334433332211 348999999987 688899999999998877 5577889999999999999844
Q ss_pred CCccCccchhHHHhhhCCccccc--CCHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHH
Q 003891 637 GSVHAHNVGVSLLTKVGLKHLIA--KNEDEYVQLALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALGL 705 (788)
Q Consensus 637 g~~~~~r~~~~~l~~~gl~~~ia--~~~~~y~~~a~~l~~d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~ 705 (788)
...... ++. -|..++++ .|++++++...++.+|++.+.+|+++.|+++.+ .|+++.+++++
T Consensus 332 ~~g~~e-----~i~-~~~~G~lv~~~d~~~la~~i~~ll~~~~~~~~l~~~ar~~~~~--~fs~~~~~~~~ 394 (396)
T cd03818 332 TAPVRE-----VIT-DGENGLLVDFFDPDALAAAVIELLDDPARRARLRRAARRTALR--YDLLSVCLPRQ 394 (396)
T ss_pred CCCchh-----hcc-cCCceEEcCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHH--hccHHHHHHHH
Confidence 322222 111 14445553 489999999999999999999999999988765 47888777665
No 112
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=99.47 E-value=1.1e-12 Score=143.37 Aligned_cols=173 Identities=16% Similarity=0.193 Sum_probs=132.9
Q ss_pred CCCCCCeEEEecCC--CCcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcH
Q 003891 521 ALTNGFITFGSFNN--LAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNH 598 (788)
Q Consensus 521 ~~~~~~~~f~~~~~--~~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~~~~l~~~~~~~gi~~~rv~~~~~~~~~~ 598 (788)
+++++.++|..+++ ..|..+.+++++.++....|+.+|+++|.| +..+.+++.+++.|+. ++|.|.|.. .
T Consensus 183 ~~~~~~~~~l~~g~~~~~kg~~~li~a~~~l~~~~~~~~l~i~G~g----~~~~~~~~~~~~~~~~-~~v~~~g~~---~ 254 (360)
T cd04951 183 GVKNDTFVILAVGRLVEAKDYPNLLKAFAKLLSDYLDIKLLIAGDG----PLRATLERLIKALGLS-NRVKLLGLR---D 254 (360)
T ss_pred CcCCCCEEEEEEeeCchhcCcHHHHHHHHHHHhhCCCeEEEEEcCC----CcHHHHHHHHHhcCCC-CcEEEeccc---c
Confidence 45566677777775 489999999999999999999999999977 4567788888888987 899999974 4
Q ss_pred HHHHhcccccEeecCCCC-CCchhHHHHhhhCCceeecCCCccCccchhHHHhhhCCcccccCCHHHHHHHHHHHh-cCH
Q 003891 599 DHMQAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIAKNEDEYVQLALQLA-SDV 676 (788)
Q Consensus 599 ~~~~~~~~~Dv~Ld~~~~-~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l~~~gl~~~ia~~~~~y~~~a~~l~-~d~ 676 (788)
+....|+.+|+++-|+.+ +.|.+++|||++|+|||+-....+.. ++...|. -+...|++++++...++. .++
T Consensus 255 ~~~~~~~~ad~~v~~s~~e~~~~~~~Ea~a~G~PvI~~~~~~~~e-----~i~~~g~-~~~~~~~~~~~~~i~~ll~~~~ 328 (360)
T cd04951 255 DIAAYYNAADLFVLSSAWEGFGLVVAEAMACELPVVATDAGGVRE-----VVGDSGL-IVPISDPEALANKIDEILKMSG 328 (360)
T ss_pred cHHHHHHhhceEEecccccCCChHHHHHHHcCCCEEEecCCChhh-----EecCCce-EeCCCCHHHHHHHHHHHHhCCH
Confidence 567788889999999876 55899999999999999844322221 1111111 122478999999999998 566
Q ss_pred HHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHH
Q 003891 677 TALANLRMSLRDLMSKSPVCDGQNFALGLESTYR 710 (788)
Q Consensus 677 ~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~ 710 (788)
+.+..+++. +....+ .|+.+.+++++++.|+
T Consensus 329 ~~~~~~~~~-~~~~~~--~~s~~~~~~~~~~~y~ 359 (360)
T cd04951 329 EERDIIGAR-RERIVK--KFSINSIVQQWLTLYT 359 (360)
T ss_pred HHHHHHHHH-HHHHHH--hcCHHHHHHHHHHHhh
Confidence 677777666 655543 3899999999999986
No 113
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=99.47 E-value=1e-11 Score=143.94 Aligned_cols=219 Identities=14% Similarity=0.074 Sum_probs=171.4
Q ss_pred HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHH
Q 003891 52 KIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNN 131 (788)
Q Consensus 52 ~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 131 (788)
..+|.+..++..+...+...+++++|+..++.+++..|+....|+.+|.++.+.+++.++... .++...+.+.
T Consensus 25 ~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~----- 97 (906)
T PRK14720 25 NYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNL----- 97 (906)
T ss_pred cCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhccccc-----
Confidence 347889999999999999999999999999999999999999999999999999998777666 5555554432
Q ss_pred HHHHHHHhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 003891 132 MAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIY 211 (788)
Q Consensus 132 la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 211 (788)
++ .+++++...+...+++..+++.+|.+|-++|+.++|...|+++++.+|+++.+++++|..|
T Consensus 98 ----------------~~-~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ 160 (906)
T PRK14720 98 ----------------KW-AIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSY 160 (906)
T ss_pred ----------------ch-hHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHH
Confidence 34 5555555555556677778888888888888888888888888888888888888888888
Q ss_pred HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH--------------------
Q 003891 212 KDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEA-------------------- 271 (788)
Q Consensus 212 ~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~-------------------- 271 (788)
... +.++|+.++.+|+.. +...++|.++.++.++.+..+|++.+.
T Consensus 161 ae~-dL~KA~~m~~KAV~~--------------~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~ 225 (906)
T PRK14720 161 EEE-DKEKAITYLKKAIYR--------------FIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGL 225 (906)
T ss_pred HHh-hHHHHHHHHHHHHHH--------------HHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHH
Confidence 888 888888888888765 556667777777777777777766433
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhhHHhH
Q 003891 272 YNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNR 309 (788)
Q Consensus 272 ~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~a~~~~ 309 (788)
+.-+-..|...+++++++.+++.+++++|+|..++..+
T Consensus 226 ~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l 263 (906)
T PRK14720 226 LEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREEL 263 (906)
T ss_pred HHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHH
Confidence 22233677778888888888888888888887776664
No 114
>cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases. Bme6 in Brucella melitensis has been shown to be involved in the biosynthesis of a polysaccharide.
Probab=99.47 E-value=3.1e-12 Score=139.74 Aligned_cols=175 Identities=17% Similarity=0.128 Sum_probs=138.0
Q ss_pred CCCCCCCeEEEecCCC--CcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCc
Q 003891 520 PALTNGFITFGSFNNL--AKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLN 597 (788)
Q Consensus 520 ~~~~~~~~~f~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~~~~l~~~~~~~gi~~~rv~~~~~~~~~ 597 (788)
+..+++.++|++++++ .|..+.+++++.++.+..|+.+|+++|.+. ......+.....+.|+. ++|.|.|.++ .
T Consensus 197 ~~~~~~~~~i~~~G~~~~~K~~~~li~a~~~l~~~~~~~~l~i~G~~~--~~~~~~~~~~~~~~~~~-~~v~~~g~~~-~ 272 (375)
T cd03821 197 FPILPDKRIILFLGRLHPKKGLDLLIEAFAKLAERFPDWHLVIAGPDE--GGYRAELKQIAAALGLE-DRVTFTGMLY-G 272 (375)
T ss_pred ccCCCCCcEEEEEeCcchhcCHHHHHHHHHHhhhhcCCeEEEEECCCC--cchHHHHHHHHHhcCcc-ceEEEcCCCC-h
Confidence 3456677788888866 899999999999999999999999998652 23344455555788997 8999999987 6
Q ss_pred HHHHHhcccccEeecCCCC-CCchhHHHHhhhCCceeecCCCccCccchhHHHhhhCCcccccCCHHHHHHHHHHHhcCH
Q 003891 598 HDHMQAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIAKNEDEYVQLALQLASDV 676 (788)
Q Consensus 598 ~~~~~~~~~~Dv~Ld~~~~-~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l~~~gl~~~ia~~~~~y~~~a~~l~~d~ 676 (788)
++....|..+|+++-|+.+ +.|++.+|||++|+|||+-....+.. ++.. +..-++..+.+++++...++.+|+
T Consensus 273 ~~~~~~~~~adv~v~ps~~e~~~~~~~Eama~G~PvI~~~~~~~~~-----~~~~-~~~~~~~~~~~~~~~~i~~l~~~~ 346 (375)
T cd03821 273 EDKAAALADADLFVLPSHSENFGIVVAEALACGTPVVTTDKVPWQE-----LIEY-GCGWVVDDDVDALAAALRRALELP 346 (375)
T ss_pred HHHHHHHhhCCEEEeccccCCCCcHHHHHHhcCCCEEEcCCCCHHH-----Hhhc-CceEEeCCChHHHHHHHHHHHhCH
Confidence 7888999999999999876 77999999999999999855432222 2222 333344566799999999999999
Q ss_pred HHHHHHHHHHHHHhhcCCCCChHHHHHHHH
Q 003891 677 TALANLRMSLRDLMSKSPVCDGQNFALGLE 706 (788)
Q Consensus 677 ~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e 706 (788)
+.++.++++.++.+.+. |+++.+++.++
T Consensus 347 ~~~~~~~~~~~~~~~~~--~s~~~~~~~~~ 374 (375)
T cd03821 347 QRLKAMGENGRALVEER--FSWTAIAQQLL 374 (375)
T ss_pred HHHHHHHHHHHHHHHHh--cCHHHHHHHhh
Confidence 99999999998876544 89999888775
No 115
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria. amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor.
Probab=99.46 E-value=6.1e-12 Score=137.08 Aligned_cols=327 Identities=17% Similarity=0.120 Sum_probs=199.9
Q ss_pred eEeeccCCcccChhHHhhhhhhcccCCCceEEEEEeccccCChhh-HHHHHHHhhhCCeEEEccCC-CHHHHHHHHHhCC
Q 003891 356 VIGYVSPDYFTHSVSYFIEAPLVYHDYQNYKVVVYSAVVKADAKT-IRFREKVMKKGGIWRDIYGI-DEKKVAAMVREDK 433 (788)
Q Consensus 356 riGyvS~df~~H~v~~~~~~~l~~~dr~~fev~~Y~~~~~~D~~t-~~~r~~~~~~~~~~~~~~~~-~~~~~a~~i~~d~ 433 (788)
+|.|++..|-.- ...++......+.+.+++|.+++..+..+... ...........-..+.+..+ ....+...++..+
T Consensus 1 ki~~~~~~~~~~-~~~~~~~~~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (355)
T cd03799 1 KIAYLVKEFPRL-SETFILREILALEAAGHEVEIFSLRPPEDTLVHPEDRAELARTRYLARSLALLAQALVLARELRRLG 79 (355)
T ss_pred CEEEECCCCCCc-chHHHHHHHHHHHhCCCeEEEEEecCcccccccccccccccchHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 366777766332 34556667777777889999887665432211 00000000000000001111 1234666778889
Q ss_pred CcEEEeCCCCCCCCcccccccCC--CCeEEecccCCCCCC---------CCCccEEEecCCCCCcCccC---CCccceEE
Q 003891 434 IDILVELTGHTANNKLGMMACQP--APVQVTWIGYPNTTG---------LPTIDYRITDSLADPPETKQ---KHVEELIR 499 (788)
Q Consensus 434 idilvdl~g~t~~~~~~~~a~r~--Apvq~~~~g~~~ttg---------~~~~Dy~i~d~~~~p~~~~~---~~~e~l~~ 499 (788)
+||+.--.++.. .....+..+. -|+-++..|+..... +...|++++..-..-..... ...+++..
T Consensus 80 ~Dii~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~s~~~~~~l~~~~~~~~~~~~v 158 (355)
T cd03799 80 IDHIHAHFGTTP-ATVAMLASRLGGIPYSFTAHGKDIFRSPDAIDLDEKLARADFVVAISEYNRQQLIRLLGCDPDKIHV 158 (355)
T ss_pred CCEEEECCCCch-HHHHHHHHHhcCCCEEEEEecccccccCchHHHHHHHhhCCEEEECCHHHHHHHHHhcCCCcccEEE
Confidence 999975333321 1222233333 344444444332211 23467776543221111222 23566777
Q ss_pred cCCCccccCCCCCCCCCCCCCCCCCCCeEEEecCCC--CcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHH
Q 003891 500 LPECFLCYTPSPEAGPVCPTPALTNGFITFGSFNNL--AKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLST 577 (788)
Q Consensus 500 lp~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~~~~l~~~ 577 (788)
+|++. ..... .+. . .....+.++++++++. .|..+.+++++.++....|+.+|.++|.+ +....+.+.
T Consensus 159 i~~~~-d~~~~--~~~-~--~~~~~~~~~i~~~g~~~~~k~~~~l~~~~~~l~~~~~~~~l~i~G~~----~~~~~~~~~ 228 (355)
T cd03799 159 VHCGV-DLERF--PPR-P--PPPPGEPLRILSVGRLVEKKGLDYLLEALALLKDRGIDFRLDIVGDG----PLRDELEAL 228 (355)
T ss_pred EeCCc-CHHHc--CCc-c--ccccCCCeEEEEEeeeccccCHHHHHHHHHHHhhcCCCeEEEEEECC----ccHHHHHHH
Confidence 77532 11100 000 0 1223444556666654 89999999999998888899999999876 455677788
Q ss_pred HHHcCCCCCcEEEcCCcCCcHHHHHhcccccEeecCCCC-------CCchhHHHHhhhCCceeecCCCccCccchhHHHh
Q 003891 578 LEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPY-------AGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLT 650 (788)
Q Consensus 578 ~~~~gi~~~rv~~~~~~~~~~~~~~~~~~~Dv~Ld~~~~-------~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l~ 650 (788)
+++.|+. ++|.|.|.++ .++....|+.+|++|-|+.+ +.+++.+|||++|+|||+........ ++.
T Consensus 229 ~~~~~~~-~~v~~~g~~~-~~~l~~~~~~adi~l~~s~~~~~~~~e~~~~~~~Ea~a~G~Pvi~~~~~~~~~-----~i~ 301 (355)
T cd03799 229 IAELGLE-DRVTLLGAKS-QEEVRELLRAADLFVLPSVTAADGDREGLPVVLMEAMAMGLPVISTDVSGIPE-----LVE 301 (355)
T ss_pred HHHcCCC-CeEEECCcCC-hHHHHHHHHhCCEEEecceecCCCCccCccHHHHHHHHcCCCEEecCCCCcch-----hhh
Confidence 8888887 8999999987 68999999999999999864 66889999999999999854332222 222
Q ss_pred hhCCccccc--CCHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHH
Q 003891 651 KVGLKHLIA--KNEDEYVQLALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALG 704 (788)
Q Consensus 651 ~~gl~~~ia--~~~~~y~~~a~~l~~d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~ 704 (788)
. |-.+++. .|.+++++....+..|++.+..++++.++.+.+. |+.+..++.
T Consensus 302 ~-~~~g~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~a~~~~~~~--~s~~~~~~~ 354 (355)
T cd03799 302 D-GETGLLVPPGDPEALADAIERLLDDPELRREMGEAGRARVEEE--FDIRKQAAR 354 (355)
T ss_pred C-CCceEEeCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHh--cCHHHHhhc
Confidence 2 3233443 3899999999999999999999999998877644 777776654
No 116
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.46 E-value=3e-12 Score=126.25 Aligned_cols=153 Identities=20% Similarity=0.205 Sum_probs=131.0
Q ss_pred hhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHH
Q 003891 141 TKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKA 220 (788)
Q Consensus 141 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA 220 (788)
-.|...|+++......++.. +|.. -+...++.++++..++++++.+|++...|..+|.+|...|++++|
T Consensus 24 ~~Y~~~g~~~~v~~~~~~~~--~~~~---------~~~~~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A 92 (198)
T PRK10370 24 GSYLLSPKWQAVRAEYQRLA--DPLH---------QFASQQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNA 92 (198)
T ss_pred HHHHHcchHHHHHHHHHHHh--Cccc---------cccCchhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHH
Confidence 35666778877654442221 1111 112367789999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHH-HHcCC--HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 003891 221 VECYQMALSIKPNFSQSLNNLGVVY-TVQGK--MDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLK 297 (788)
Q Consensus 221 ~~~~~~al~~~p~~~~~~~~la~~~-~~~g~--~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~ 297 (788)
+..|+++++++|+++.++..+|.++ ...|+ +++|.+.++++++.+|++..+++.+|..+...|++++|+.+|+++++
T Consensus 93 ~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~ 172 (198)
T PRK10370 93 LLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLD 172 (198)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 9999999999999999999999975 67787 59999999999999999999999999999999999999999999999
Q ss_pred hCCCChh
Q 003891 298 IDPDSRN 304 (788)
Q Consensus 298 l~p~~~~ 304 (788)
++|.+.+
T Consensus 173 l~~~~~~ 179 (198)
T PRK10370 173 LNSPRVN 179 (198)
T ss_pred hCCCCcc
Confidence 9987654
No 117
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.46 E-value=1.8e-11 Score=118.32 Aligned_cols=178 Identities=16% Similarity=0.112 Sum_probs=164.2
Q ss_pred hhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHH
Q 003891 139 LGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLD 218 (788)
Q Consensus 139 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 218 (788)
........++.+-|..++++.....|.+..+....|..+...|++++|+++|+..++-+|.+..++-..-.+...+|+.-
T Consensus 58 V~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l 137 (289)
T KOG3060|consen 58 VFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNL 137 (289)
T ss_pred HHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcH
Confidence 33334456799999999999999999999999999999999999999999999999999999999998888899999999
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHH
Q 003891 219 KAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAG---SISLAIDAYEQC 295 (788)
Q Consensus 219 eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g---~~~eA~~~~~~a 295 (788)
+|++.+.+.++..+.+.++|..++.+|...|+|++|.-++++.+-+.|.++..+..+|.+++-+| +++-|.++|.++
T Consensus 138 ~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~a 217 (289)
T KOG3060|consen 138 EAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERA 217 (289)
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999998877 577899999999
Q ss_pred HhhCCCChhhHHhHHHHhhhc
Q 003891 296 LKIDPDSRNAGQNRLLAMNYI 316 (788)
Q Consensus 296 l~l~p~~~~a~~~~lla~~~l 316 (788)
++++|.+..+.+...++...+
T Consensus 218 lkl~~~~~ral~GI~lc~~~l 238 (289)
T KOG3060|consen 218 LKLNPKNLRALFGIYLCGSAL 238 (289)
T ss_pred HHhChHhHHHHHHHHHHHHHH
Confidence 999999888888877766555
No 118
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=99.46 E-value=2e-11 Score=141.62 Aligned_cols=246 Identities=15% Similarity=0.147 Sum_probs=164.4
Q ss_pred cCCCChhhHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 003891 12 ADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMY 91 (788)
Q Consensus 12 ~~P~~~~a~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~ 91 (788)
.+|.+.++ +..+...+...+++++|++.++.+++.+|+....|+.+|.++.+.++++++... .++...+.+
T Consensus 26 ~~p~n~~a-------~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~ 96 (906)
T PRK14720 26 YSLSKFKE-------LDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQN 96 (906)
T ss_pred CCcchHHH-------HHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccc
Confidence 45666666 666677778889999999999999999999999999999999999988777666 555544443
Q ss_pred H-------------------HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhcCCHHHH
Q 003891 92 A-------------------EAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQG 152 (788)
Q Consensus 92 ~-------------------~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~g~~~~A 152 (788)
. .+++.+|.||-++|+.++|...|+++++.+|++..+..++|..|.. . ++++|
T Consensus 97 ~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae-------~-dL~KA 168 (906)
T PRK14720 97 LKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEE-------E-DKEKA 168 (906)
T ss_pred cchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHH-------h-hHHHH
Confidence 3 7788888888888888888888888888888887655555544433 4 78888
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 003891 153 VAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKP 232 (788)
Q Consensus 153 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p 232 (788)
++++.+++.. +...+++.++.+++.+.+..+|++.+.+..+-......-.+..+
T Consensus 169 ~~m~~KAV~~--------------~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~------------ 222 (906)
T PRK14720 169 ITYLKKAIYR--------------FIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRL------------ 222 (906)
T ss_pred HHHHHHHHHH--------------HHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchh------------
Confidence 8888888754 55666788888888888887777655433322111111001111
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc--------------------CCHHHHHHHH
Q 003891 233 NFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDA--------------------GSISLAIDAY 292 (788)
Q Consensus 233 ~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~--------------------g~~~eA~~~~ 292 (788)
...+.-+-..|...+++++++.+++.+++.+|++..+...++.+|... .++..|+.-|
T Consensus 223 --~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~~kY~~~~~~ee~l~~s~l~~~~~~~~~~i~~f 300 (906)
T PRK14720 223 --VGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYKEKYKDHSLLEDYLKMSDIGNNRKPVKDCIADF 300 (906)
T ss_pred --HHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHHHHccCcchHHHHHHHhccccCCccHHHHHHHH
Confidence 112222334455555666666666666666666666666666655521 2345566666
Q ss_pred HHHHhhCCCC
Q 003891 293 EQCLKIDPDS 302 (788)
Q Consensus 293 ~~al~l~p~~ 302 (788)
++.+..++.+
T Consensus 301 ek~i~f~~G~ 310 (906)
T PRK14720 301 EKNIVFDTGN 310 (906)
T ss_pred HHHeeecCCC
Confidence 6666655554
No 119
>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases. UDP-glucose-diacylglycerol glucosyltransferase (UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol.
Probab=99.46 E-value=1.1e-12 Score=143.39 Aligned_cols=173 Identities=18% Similarity=0.205 Sum_probs=136.3
Q ss_pred CCCCCCeEEEecCCC--CcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcH
Q 003891 521 ALTNGFITFGSFNNL--AKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNH 598 (788)
Q Consensus 521 ~~~~~~~~f~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~~~~l~~~~~~~gi~~~rv~~~~~~~~~~ 598 (788)
.+.++.++++++++. .|..+.++++|.++....|+.+|++.|.+ +....+.+...+.++. ++|.|.|.++ .+
T Consensus 197 ~~~~~~~~i~~~G~~~~~k~~~~l~~~~~~~~~~~~~~~l~i~G~~----~~~~~~~~~~~~~~~~-~~v~~~g~~~-~~ 270 (374)
T cd03817 197 GIPEDEPVLLYVGRLAKEKNIDFLIRAFARLLKEEPDVKLVIVGDG----PEREELEELARELGLA-DRVIFTGFVP-RE 270 (374)
T ss_pred CCCCCCeEEEEEeeeecccCHHHHHHHHHHHHHhCCCeEEEEEeCC----chHHHHHHHHHHcCCC-CcEEEeccCC-hH
Confidence 345566777887765 78899999999999988899999999876 5567788888888987 8999999987 68
Q ss_pred HHHHhcccccEeecCCCC-CCchhHHHHhhhCCceeecCCCccCccchhHHHhhhCCcccccCC-HHHHHHHHHHHhcCH
Q 003891 599 DHMQAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIAKN-EDEYVQLALQLASDV 676 (788)
Q Consensus 599 ~~~~~~~~~Dv~Ld~~~~-~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l~~~gl~~~ia~~-~~~y~~~a~~l~~d~ 676 (788)
+....|+.+|+++.|+.+ ++|++++|||++|+|||+.....+..-+ .-|-.+++..+ .+++++...++.+|+
T Consensus 271 ~~~~~~~~ad~~l~~s~~e~~~~~~~Ea~~~g~PvI~~~~~~~~~~i------~~~~~g~~~~~~~~~~~~~i~~l~~~~ 344 (374)
T cd03817 271 ELPDYYKAADLFVFASTTETQGLVLLEAMAAGLPVVAVDAPGLPDLV------ADGENGFLFPPGDEALAEALLRLLQDP 344 (374)
T ss_pred HHHHHHHHcCEEEecccccCcChHHHHHHHcCCcEEEeCCCChhhhe------ecCceeEEeCCCCHHHHHHHHHHHhCh
Confidence 899999999999999966 6789999999999999985543332211 12334444433 339999999999999
Q ss_pred HHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHH
Q 003891 677 TALANLRMSLRDLMSKSPVCDGQNFALGLESTYRN 711 (788)
Q Consensus 677 ~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~~ 711 (788)
+.++.++++.++...+. + +.+.+++.|++
T Consensus 345 ~~~~~~~~~~~~~~~~~---~---~~~~~~~~~~~ 373 (374)
T cd03817 345 ELRRRLSKNAEESAEKF---S---FAKKVEKLYEE 373 (374)
T ss_pred HHHHHHHHHHHHHHHHH---H---HHHHHHHHHhc
Confidence 99999999988776532 2 77888888765
No 120
>PRK10307 putative glycosyl transferase; Provisional
Probab=99.43 E-value=3.1e-12 Score=142.68 Aligned_cols=205 Identities=17% Similarity=0.150 Sum_probs=151.5
Q ss_pred ccceEEcCCCccc--cCCCCCCC--CCCCCCCCCCCCeEEEecCCC--CcCCHHHHHHHHHHHhHcCCcEEEEecCCCCC
Q 003891 494 VEELIRLPECFLC--YTPSPEAG--PVCPTPALTNGFITFGSFNNL--AKITPKVLQVWARILCAVPNSRLVVKCKPFCC 567 (788)
Q Consensus 494 ~e~l~~lp~~~~~--~~~~~~~~--~~~~~~~~~~~~~~f~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~ 567 (788)
.+++..+|+..-. |.|.+... ..+...+++++.++++.++++ .|....+++++.++ ...|+.+|+++|.|
T Consensus 193 ~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~l~~~kg~~~li~a~~~l-~~~~~~~l~ivG~g--- 268 (412)
T PRK10307 193 AEKVIFFPNWSEVARFQPVADADVDALRAQLGLPDGKKIVLYSGNIGEKQGLELVIDAARRL-RDRPDLIFVICGQG--- 268 (412)
T ss_pred cccEEEECCCcCHhhcCCCCccchHHHHHHcCCCCCCEEEEEcCccccccCHHHHHHHHHHh-ccCCCeEEEEECCC---
Confidence 3567788864311 22221110 111224566777888888876 88899999998766 55689999999987
Q ss_pred HHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHHHHhcccccEeecCCCCCC-----chhHHHHhhhCCceeecCCCccCc
Q 003891 568 DSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPYAG-----TTTTCESLYMGVPCVTMAGSVHAH 642 (788)
Q Consensus 568 ~~~~~~l~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~~Dv~Ld~~~~~g-----~~t~~eal~~GvPvvt~~g~~~~~ 642 (788)
+.++.+++.++++|++ +|.|+|.++ .++....|+.+|+++-|+...+ ++...|||++|+|||+-....
T Consensus 269 -~~~~~l~~~~~~~~l~--~v~f~G~~~-~~~~~~~~~~aDi~v~ps~~e~~~~~~p~kl~eama~G~PVi~s~~~g--- 341 (412)
T PRK10307 269 -GGKARLEKMAQCRGLP--NVHFLPLQP-YDRLPALLKMADCHLLPQKAGAADLVLPSKLTNMLASGRNVVATAEPG--- 341 (412)
T ss_pred -hhHHHHHHHHHHcCCC--ceEEeCCCC-HHHHHHHHHhcCEeEEeeccCcccccCcHHHHHHHHcCCCEEEEeCCC---
Confidence 5678888888999985 699999987 6888899999999998886543 345799999999999843110
Q ss_pred cchhHHHhhhCCcccc--cCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHH
Q 003891 643 NVGVSLLTKVGLKHLI--AKNEDEYVQLALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRNMWH 714 (788)
Q Consensus 643 r~~~~~l~~~gl~~~i--a~~~~~y~~~a~~l~~d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~ 714 (788)
.....+.. + .+++ ..|.+++++...+|.+|++.++.|+++.++.+.+. |+.+..++++++.|+++..
T Consensus 342 ~~~~~~i~--~-~G~~~~~~d~~~la~~i~~l~~~~~~~~~~~~~a~~~~~~~--fs~~~~~~~~~~~~~~~~~ 410 (412)
T PRK10307 342 TELGQLVE--G-IGVCVEPESVEALVAAIAALARQALLRPKLGTVAREYAERT--LDKENVLRQFIADIRGLVA 410 (412)
T ss_pred chHHHHHh--C-CcEEeCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHH--cCHHHHHHHHHHHHHHHhc
Confidence 00011222 3 3344 36899999999999999999999999999887544 8999999999999998753
No 121
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.43 E-value=7.3e-10 Score=118.86 Aligned_cols=286 Identities=16% Similarity=0.118 Sum_probs=192.7
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------------------
Q 003891 28 TDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALER------------------- 88 (788)
Q Consensus 28 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~------------------- 88 (788)
+..+.+.++.+..++|+..++ ..++.+.......|.+++++++|++|+..|+..++.+
T Consensus 83 fEKAYc~Yrlnk~Dealk~~~---~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l 159 (652)
T KOG2376|consen 83 FEKAYCEYRLNKLDEALKTLK---GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAAL 159 (652)
T ss_pred HHHHHHHHHcccHHHHHHHHh---cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhh
Confidence 467788899999999999988 4566667788999999999999999999999885421
Q ss_pred -----------CC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--------CCCcHHHHHHHHHHHHHhhhhhhhcCC
Q 003891 89 -----------PM-YAEAYCNMGVIYKNRGDLESAIACYERCLAV--------SPNFEIAKNNMAIALTDLGTKVKLEGD 148 (788)
Q Consensus 89 -----------p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~l~~lg~~~~~~g~ 148 (788)
|. ..+.+++.+.++...|+|.+|++.+++++++ +.+..+....+..+..+++.++..+|+
T Consensus 160 ~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gq 239 (652)
T KOG2376|consen 160 QVQLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQ 239 (652)
T ss_pred hHHHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcc
Confidence 11 3567899999999999999999999999544 233355666778888899999999999
Q ss_pred HHHHHHHHHHHHHhCCCCHHH-------------------------------------------------HHHHHHHHHH
Q 003891 149 INQGVAYYKKALYYNWHYADA-------------------------------------------------MYNLGVAYGE 179 (788)
Q Consensus 149 ~~~A~~~~~~al~~~p~~~~~-------------------------------------------------~~~la~~~~~ 179 (788)
.++|...|...++.++.+... +.+.+.+.+.
T Consensus 240 t~ea~~iy~~~i~~~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~ 319 (652)
T KOG2376|consen 240 TAEASSIYVDIIKRNPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALF 319 (652)
T ss_pred hHHHHHHHHHHHHhcCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999886654311 1122222222
Q ss_pred cC----------------------------------ChHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHcCCHHHHHHHH
Q 003891 180 ML----------------------------------KFDMAIVFYELAFHFNPHC-AEACNNLGVIYKDRDNLDKAVECY 224 (788)
Q Consensus 180 ~g----------------------------------~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~eA~~~~ 224 (788)
.+ .+.+|.+++....+.+|.. ..+...++.+...+|+++.|++.+
T Consensus 320 tnk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il 399 (652)
T KOG2376|consen 320 TNKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEIL 399 (652)
T ss_pred hhhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 22 2233333333333344444 445555566666666666666666
Q ss_pred HHHHhh-------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------CCCCHHHHHHHHHHHHHcCCHHHHHH
Q 003891 225 QMALSI-------KPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAA-------NPTYAEAYNNLGVLYRDAGSISLAID 290 (788)
Q Consensus 225 ~~al~~-------~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~-------~p~~~~~~~~la~~~~~~g~~~eA~~ 290 (788)
...+.. ....+.+-..+-..+...++.+.|...+.+++.. .+.....+-.++..-.+.|+-++|..
T Consensus 400 ~~~~~~~~ss~~~~~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s 479 (652)
T KOG2376|consen 400 SLFLESWKSSILEAKHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASS 479 (652)
T ss_pred HHHhhhhhhhhhhhccChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHH
Confidence 622211 1122233333334444555444444444444432 22222345556777778899999999
Q ss_pred HHHHHHhhCCCChhhHHhHHHHhhhc
Q 003891 291 AYEQCLKIDPDSRNAGQNRLLAMNYI 316 (788)
Q Consensus 291 ~~~~al~l~p~~~~a~~~~lla~~~l 316 (788)
.+++.++.+|++.++...+..+.+++
T Consensus 480 ~leel~k~n~~d~~~l~~lV~a~~~~ 505 (652)
T KOG2376|consen 480 LLEELVKFNPNDTDLLVQLVTAYARL 505 (652)
T ss_pred HHHHHHHhCCchHHHHHHHHHHHHhc
Confidence 99999999999999988877776665
No 122
>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS.
Probab=99.43 E-value=2.9e-12 Score=139.66 Aligned_cols=325 Identities=17% Similarity=0.112 Sum_probs=197.8
Q ss_pred ChhHHhhhhhhcccCCCceEEEEEeccccCChhhHHHHH--------H-Hhh--hCCeEEEccCCCHHHHHHHHH--hCC
Q 003891 367 HSVSYFIEAPLVYHDYQNYKVVVYSAVVKADAKTIRFRE--------K-VMK--KGGIWRDIYGIDEKKVAAMVR--EDK 433 (788)
Q Consensus 367 H~v~~~~~~~l~~~dr~~fev~~Y~~~~~~D~~t~~~r~--------~-~~~--~~~~~~~~~~~~~~~~a~~i~--~d~ 433 (788)
...+.++..+...+...+++|++++.............. . ... ....+..........+...|+ ..+
T Consensus 14 ~g~~~~~~~~~~~l~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 93 (377)
T cd03798 14 GGGGIFVKELARALAKRGVEVTVLAPGPWGPKLLDLLKGRLVGVERLPVLLPVVPLLKGPLLYLLAARALLKLLKLKRFR 93 (377)
T ss_pred chHHHHHHHHHHHHHHCCCceEEEecCCCCCCchhhcccccccccccccCcchhhccccchhHHHHHHHHHHHHhcccCC
Confidence 344556667777777788999988765433221110000 0 000 000000000111355778888 999
Q ss_pred CcEEEeCCCCCCCCcccccccCC--CCeEEecccCCCCCC-------------CCCccEEEecCCCCCcCccCC--Cccc
Q 003891 434 IDILVELTGHTANNKLGMMACQP--APVQVTWIGYPNTTG-------------LPTIDYRITDSLADPPETKQK--HVEE 496 (788)
Q Consensus 434 idilvdl~g~t~~~~~~~~a~r~--Apvq~~~~g~~~ttg-------------~~~~Dy~i~d~~~~p~~~~~~--~~e~ 496 (788)
+||++-......+-... ...|. .|+-+...+...... +...|++++..-......... ...+
T Consensus 94 ~dii~~~~~~~~~~~~~-~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~~~~~~~ 172 (377)
T cd03798 94 PDLIHAHFAYPDGFAAA-LLKRKLGIPLVVTLHGSDVNLLPRKRLLRALLRRALRRADAVIAVSEALADELKALGIDPEK 172 (377)
T ss_pred CCEEEEeccchHHHHHH-HHHHhcCCCEEEEeecchhcccCchhhHHHHHHHHHhcCCeEEeCCHHHHHHHHHhcCCCCc
Confidence 99987653333222211 22222 354444433322111 223577665432211111222 4566
Q ss_pred eEEcCCCccccCCCCCCCCCC---CCCCCCCCCeEEEecCCC--CcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHH
Q 003891 497 LIRLPECFLCYTPSPEAGPVC---PTPALTNGFITFGSFNNL--AKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVR 571 (788)
Q Consensus 497 l~~lp~~~~~~~~~~~~~~~~---~~~~~~~~~~~f~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~~ 571 (788)
+..+|++. .+....+... ......++.++++++++. .|....+++++..+....|+.+|.+.|.+ ...
T Consensus 173 ~~~i~~~~---~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~k~~~~li~~~~~~~~~~~~~~l~i~g~~----~~~ 245 (377)
T cd03798 173 VTVIPNGV---DTERFSPADRAEARKLGLPEDKKVILFVGRLVPRKGIDYLIEALARLLKKRPDVHLVIVGDG----PLR 245 (377)
T ss_pred eEEcCCCc---CcccCCCcchHHHHhccCCCCceEEEEeccCccccCHHHHHHHHHHHHhcCCCeEEEEEcCC----cch
Confidence 77777542 1111100000 012344566788888865 78889999999999988899999999876 445
Q ss_pred HHHHHHHHHcCCCCCcEEEcCCcCCcHHHHHhcccccEeecCCCC-CCchhHHHHhhhCCceeecCCCccCccchhHHHh
Q 003891 572 HRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLT 650 (788)
Q Consensus 572 ~~l~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~~Dv~Ld~~~~-~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l~ 650 (788)
..+.+.++..++. ++|.+.|.++ .++....|..||+++-|+.+ +.+++++|||++|+|||+.....+.. ++.
T Consensus 246 ~~~~~~~~~~~~~-~~v~~~g~~~-~~~~~~~~~~ad~~i~~~~~~~~~~~~~Ea~~~G~pvI~~~~~~~~~-----~~~ 318 (377)
T cd03798 246 EALEALAAELGLE-DRVTFLGAVP-HEEVPAYYAAADVFVLPSLREGFGLVLLEAMACGLPVVATDVGGIPE-----IIT 318 (377)
T ss_pred HHHHHHHHhcCCc-ceEEEeCCCC-HHHHHHHHHhcCeeecchhhccCChHHHHHHhcCCCEEEecCCChHH-----Hhc
Confidence 6677777788887 8999999987 68899999999999999876 77899999999999999844322211 111
Q ss_pred hhCCcccc--cCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHH
Q 003891 651 KVGLKHLI--AKNEDEYVQLALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRN 711 (788)
Q Consensus 651 ~~gl~~~i--a~~~~~y~~~a~~l~~d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~~ 711 (788)
. +..+++ ..|.+++++...++.+|++. .+..+.+....+ .|+++.+++.+.+.|++
T Consensus 319 ~-~~~g~~~~~~~~~~l~~~i~~~~~~~~~--~~~~~~~~~~~~--~~s~~~~~~~~~~~~~~ 376 (377)
T cd03798 319 D-GENGLLVPPGDPEALAEAILRLLADPWL--RLGRAARRRVAE--RFSWENVAERLLELYRE 376 (377)
T ss_pred C-CcceeEECCCCHHHHHHHHHHHhcCcHH--HHhHHHHHHHHH--HhhHHHHHHHHHHHHhh
Confidence 1 222333 45899999999999999886 444444444433 37899999999988875
No 123
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.42 E-value=1.5e-11 Score=121.28 Aligned_cols=125 Identities=18% Similarity=0.150 Sum_probs=114.7
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHH-HHcCC--HHHHHH
Q 003891 146 EGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIY-KDRDN--LDKAVE 222 (788)
Q Consensus 146 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~-~~~g~--~~eA~~ 222 (788)
.++.++++..++++++.+|++.+.|..+|.+|...|++++|+..|+++++++|++..++..+|.++ ...|+ +++|.+
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~ 131 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTRE 131 (198)
T ss_pred chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHH
Confidence 457789999999999999999999999999999999999999999999999999999999999975 67777 599999
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 003891 223 CYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAE 270 (788)
Q Consensus 223 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~ 270 (788)
.++++++.+|++..++..+|..+...|++++|+.+++++++..|.+..
T Consensus 132 ~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~~ 179 (198)
T PRK10370 132 MIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPRVN 179 (198)
T ss_pred HHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcc
Confidence 999999999999999999999999999999999999999999877543
No 124
>TIGR02472 sucr_P_syn_N sucrose-phosphate synthase, putative, glycosyltransferase domain. This family consists of the N-terminal regions, or in some cases the entirety, of bacterial proteins closely related to plant sucrose-phosphate synthases (SPS). The C-terminal domain (TIGR02471), found with most members of this family, resembles both bona fide plant sucrose-phosphate phosphatases (SPP) and the SPP-like domain of plant SPS. At least two members of this family lack the SPP-like domain, which may have binding or regulatory rather than enzymatic activity by analogy to plant SPS. This enzyme produces sucrose 6-phosphate and UDP from UDP-glucose and D-fructose 6-phosphate, and may be encoded near the gene for fructokinase.
Probab=99.42 E-value=4.7e-12 Score=142.07 Aligned_cols=175 Identities=13% Similarity=0.020 Sum_probs=127.5
Q ss_pred CCCCeEEEecCCC--CcCCHHHHHHHHHH--HhHcCCcEEEEecCCCCCH-------HHHHHHHHHHHHcCCCCCcEEEc
Q 003891 523 TNGFITFGSFNNL--AKITPKVLQVWARI--LCAVPNSRLVVKCKPFCCD-------SVRHRFLSTLEQLGLESLRVDLL 591 (788)
Q Consensus 523 ~~~~~~f~~~~~~--~K~~~~~~~~~~~i--l~~~p~~~l~l~~~~~~~~-------~~~~~l~~~~~~~gi~~~rv~~~ 591 (788)
+.+.+++++++|+ .|..+.++++++++ +...++.+ +++|++-..+ ...+++.....+.|+. ++|.|.
T Consensus 245 ~~~~~~i~~vGrl~~~Kg~~~li~A~~~l~~~~~~~~l~-li~G~g~~~~~l~~~~~~~~~~~~~~~~~~~l~-~~V~f~ 322 (439)
T TIGR02472 245 DPEKPPILAISRPDRRKNIPSLVEAYGRSPKLQEMANLV-LVLGCRDDIRKMESQQREVLQKVLLLIDRYDLY-GKVAYP 322 (439)
T ss_pred ccCCcEEEEEcCCcccCCHHHHHHHHHhChhhhhhccEE-EEeCCccccccccHHHHHHHHHHHHHHHHcCCC-ceEEec
Confidence 3445567788876 89999999999864 23334433 2445442111 1233456667888998 899999
Q ss_pred CCcCCcHHHHHhcccc----cEeecCCCC-CCchhHHHHhhhCCceeecCCCccCccchhH-HHhhhCCcccc--cCCHH
Q 003891 592 PLILLNHDHMQAYSLM----DISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGVS-LLTKVGLKHLI--AKNED 663 (788)
Q Consensus 592 ~~~~~~~~~~~~~~~~----Dv~Ld~~~~-~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~-~l~~~gl~~~i--a~~~~ 663 (788)
|.++ .++....|+.+ |+|+-|+.+ +.|.+++|||++|+|||+ +++++. -+-.-|-.+++ ..|++
T Consensus 323 g~~~-~~~~~~~~~~a~~~~Dv~v~pS~~E~fg~~~lEAma~G~PvV~-------s~~gg~~eiv~~~~~G~lv~~~d~~ 394 (439)
T TIGR02472 323 KHHR-PDDVPELYRLAARSRGIFVNPALTEPFGLTLLEAAACGLPIVA-------TDDGGPRDIIANCRNGLLVDVLDLE 394 (439)
T ss_pred CCCC-HHHHHHHHHHHhhcCCEEecccccCCcccHHHHHHHhCCCEEE-------eCCCCcHHHhcCCCcEEEeCCCCHH
Confidence 9876 67888888766 999999877 669999999999999998 555410 01111333444 35899
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHH
Q 003891 664 EYVQLALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTY 709 (788)
Q Consensus 664 ~y~~~a~~l~~d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~ 709 (788)
++.+...++.+|++.+++|+++.++++.+. |+++.+++++++.+
T Consensus 395 ~la~~i~~ll~~~~~~~~~~~~a~~~~~~~--fsw~~~~~~~~~l~ 438 (439)
T TIGR02472 395 AIASALEDALSDSSQWQLWSRNGIEGVRRH--YSWDAHVEKYLRIL 438 (439)
T ss_pred HHHHHHHHHHhCHHHHHHHHHHHHHHHHHh--CCHHHHHHHHHHHh
Confidence 999999999999999999999999887544 89999999988765
No 125
>PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional
Probab=99.41 E-value=2.3e-12 Score=140.88 Aligned_cols=325 Identities=14% Similarity=0.105 Sum_probs=185.2
Q ss_pred eEeeccCCccc-ChhHHhhhhhhcccCCC--ceEEEEEeccccCChhhHHHHHHHhhhCCeEE--Ecc--C--CCHHHHH
Q 003891 356 VIGYVSPDYFT-HSVSYFIEAPLVYHDYQ--NYKVVVYSAVVKADAKTIRFREKVMKKGGIWR--DIY--G--IDEKKVA 426 (788)
Q Consensus 356 riGyvS~df~~-H~v~~~~~~~l~~~dr~--~fev~~Y~~~~~~D~~t~~~r~~~~~~~~~~~--~~~--~--~~~~~~a 426 (788)
||.++...+.. --+..++..+...+... ++++++++.....+.. ..+. .... ..+. .+. . .....+.
T Consensus 2 kI~~~~~~~~~~GG~e~~~~~l~~~L~~~~~g~~v~v~~~~~~~~~~--~~~~-~~~~-~~~~~~~~~~~~~~~~~~~l~ 77 (359)
T PRK09922 2 KIAFIGEAVSGFGGMETVISNVINTFEESKINCEMFFFCRNDKMDKA--WLKE-IKYA-QSFSNIKLSFLRRAKHVYNFS 77 (359)
T ss_pred eeEEecccccCCCchhHHHHHHHHHhhhcCcceeEEEEecCCCCChH--HHHh-cchh-cccccchhhhhcccHHHHHHH
Confidence 56666543321 22445566667777766 7999988765443221 1111 0000 0000 011 0 1124577
Q ss_pred HHHHhCCCcEEEeCCCCCCCCcccccccCC--CCe-EEeccc--CCCCCC-----CCCccEEEecCCCCCcCccC--CCc
Q 003891 427 AMVREDKIDILVELTGHTANNKLGMMACQP--APV-QVTWIG--YPNTTG-----LPTIDYRITDSLADPPETKQ--KHV 494 (788)
Q Consensus 427 ~~i~~d~idilvdl~g~t~~~~~~~~a~r~--Apv-q~~~~g--~~~ttg-----~~~~Dy~i~d~~~~p~~~~~--~~~ 494 (788)
+.|++.++||++-.+... .....++.+. .|+ .++|.. .+.... +...|++++-.-..-..... .-.
T Consensus 78 ~~l~~~~~Dii~~~~~~~--~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~d~~i~~S~~~~~~~~~~~~~~ 155 (359)
T PRK09922 78 KWLKETQPDIVICIDVIS--CLYANKARKKSGKQFKIFSWPHFSLDHKKHAECKKITCADYHLAISSGIKEQMMARGISA 155 (359)
T ss_pred HHHHhcCCCEEEEcCHHH--HHHHHHHHHHhCCCCeEEEEecCcccccchhhhhhhhcCCEEEEcCHHHHHHHHHcCCCH
Confidence 889999999997542211 1222222221 122 244321 111111 12334444321110000011 113
Q ss_pred cceEEcCCCccccCCCCCCCCCCCCCCCCCCCeEEEecCCC----CcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHH
Q 003891 495 EELIRLPECFLCYTPSPEAGPVCPTPALTNGFITFGSFNNL----AKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSV 570 (788)
Q Consensus 495 e~l~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~----~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~ 570 (788)
+++..+|+.. ... .... +.+ ..++.++|++++++ .|....+++++.++. ++.+|+++|.| +.
T Consensus 156 ~ki~vi~N~i-d~~--~~~~---~~~-~~~~~~~i~~~Grl~~~~~k~~~~l~~a~~~~~---~~~~l~ivG~g----~~ 221 (359)
T PRK09922 156 QRISVIYNPV-EIK--TIII---PPP-ERDKPAVFLYVGRLKFEGQKNVKELFDGLSQTT---GEWQLHIIGDG----SD 221 (359)
T ss_pred HHEEEEcCCC-CHH--HccC---CCc-ccCCCcEEEEEEEEecccCcCHHHHHHHHHhhC---CCeEEEEEeCC----cc
Confidence 5566666532 100 0000 011 11235677788875 377778888877653 47899999987 55
Q ss_pred HHHHHHHHHHcCCCCCcEEEcCCcCCc-HHHHHhcccccEeecCCCC-CCchhHHHHhhhCCceeecC-CCccCccchhH
Q 003891 571 RHRFLSTLEQLGLESLRVDLLPLILLN-HDHMQAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMA-GSVHAHNVGVS 647 (788)
Q Consensus 571 ~~~l~~~~~~~gi~~~rv~~~~~~~~~-~~~~~~~~~~Dv~Ld~~~~-~g~~t~~eal~~GvPvvt~~-g~~~~~r~~~~ 647 (788)
++.+++..++.|+. ++|.|.|.+... ++....|..+|+++-|+.+ +.|.+++|||++|+|||+.. ..... .
T Consensus 222 ~~~l~~~~~~~~l~-~~v~f~G~~~~~~~~~~~~~~~~d~~v~~s~~Egf~~~~lEAma~G~Pvv~s~~~~g~~-----e 295 (359)
T PRK09922 222 FEKCKAYSRELGIE-QRIIWHGWQSQPWEVVQQKIKNVSALLLTSKFEGFPMTLLEAMSYGIPCISSDCMSGPR-----D 295 (359)
T ss_pred HHHHHHHHHHcCCC-CeEEEecccCCcHHHHHHHHhcCcEEEECCcccCcChHHHHHHHcCCCEEEeCCCCChH-----H
Confidence 77888888999998 899999987543 4556678999999999977 66999999999999999844 22111 1
Q ss_pred HHhhhCCcccc--cCCHHHHHHHHHHHhcCHHHH--HHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHH
Q 003891 648 LLTKVGLKHLI--AKNEDEYVQLALQLASDVTAL--ANLRMSLRDLMSKSPVCDGQNFALGLESTYRNMWH 714 (788)
Q Consensus 648 ~l~~~gl~~~i--a~~~~~y~~~a~~l~~d~~~~--~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~ 714 (788)
++ .-|..+++ ..|.+++++....+.+|++.+ .++++.++ -|..+.|+++|-++|..+-+
T Consensus 296 iv-~~~~~G~lv~~~d~~~la~~i~~l~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~ 358 (359)
T PRK09922 296 II-KPGLNGELYTPGNIDEFVGKLNKVISGEVKYQHDAIPNSIE-------RFYEVLYFKNLNNALFSKLQ 358 (359)
T ss_pred Hc-cCCCceEEECCCCHHHHHHHHHHHHhCcccCCHHHHHHHHH-------HhhHHHHHHHHHHHHHHHhc
Confidence 12 12444444 468999999999999999843 33333322 15678899999998887653
No 126
>TIGR02918 accessory Sec system glycosylation protein GtfA. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus. Members are associated with glycosylation of serine-rich glycoproteins exported by the accessory Sec system.
Probab=99.41 E-value=9.2e-12 Score=140.26 Aligned_cols=165 Identities=8% Similarity=0.021 Sum_probs=131.7
Q ss_pred eEEEecCCC--CcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHHHHhc
Q 003891 527 ITFGSFNNL--AKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAY 604 (788)
Q Consensus 527 ~~f~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~~~~l~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~ 604 (788)
.++++++|+ .|..+.+++++.++.+..|+.+|.++|.| +.++.+++.+++.|+. ++|.|.|... ....|
T Consensus 320 ~~il~vGrl~~~Kg~~~li~A~~~l~~~~p~~~l~i~G~G----~~~~~l~~~i~~~~l~-~~V~f~G~~~----~~~~~ 390 (500)
T TIGR02918 320 FSIITASRLAKEKHIDWLVKAVVKAKKSVPELTFDIYGEG----GEKQKLQKIINENQAQ-DYIHLKGHRN----LSEVY 390 (500)
T ss_pred eEEEEEeccccccCHHHHHHHHHHHHhhCCCeEEEEEECc----hhHHHHHHHHHHcCCC-CeEEEcCCCC----HHHHH
Confidence 456666665 89999999999999999999999999987 5678899999999998 8999999753 44567
Q ss_pred ccccEeecCCCC-CCchhHHHHhhhCCceeecCCCccCccch--hHHHhhhCCcccccC------C----HHHHHHHHHH
Q 003891 605 SLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVG--VSLLTKVGLKHLIAK------N----EDEYVQLALQ 671 (788)
Q Consensus 605 ~~~Dv~Ld~~~~-~g~~t~~eal~~GvPvvt~~g~~~~~r~~--~~~l~~~gl~~~ia~------~----~~~y~~~a~~ 671 (788)
+.+|+++-|+-+ +.|.|++|||++|+|||+ ++++ ..=+..-|..+++.+ | .+++++..++
T Consensus 391 ~~adv~v~pS~~Egfgl~~lEAma~G~PVI~-------~dv~~G~~eiI~~g~nG~lv~~~~~~~d~~~~~~~la~~I~~ 463 (500)
T TIGR02918 391 KDYELYLSASTSEGFGLTLMEAVGSGLGMIG-------FDVNYGNPTFIEDNKNGYLIPIDEEEDDEDQIITALAEKIVE 463 (500)
T ss_pred HhCCEEEEcCccccccHHHHHHHHhCCCEEE-------ecCCCCCHHHccCCCCEEEEeCCccccchhHHHHHHHHHHHH
Confidence 789999999976 669999999999999998 4432 111223366666654 2 7788888999
Q ss_pred HhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHH
Q 003891 672 LASDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRN 711 (788)
Q Consensus 672 l~~d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~~ 711 (788)
|.+ ++.+.+|+++.++.. .-|+.+..++.+++.+++
T Consensus 464 ll~-~~~~~~~~~~a~~~a---~~fs~~~v~~~w~~ll~~ 499 (500)
T TIGR02918 464 YFN-SNDIDAFHEYSYQIA---EGFLTANIIEKWKKLVRE 499 (500)
T ss_pred HhC-hHHHHHHHHHHHHHH---HhcCHHHHHHHHHHHHhh
Confidence 985 557889999988753 338999999999988865
No 127
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.40 E-value=2.2e-09 Score=111.94 Aligned_cols=286 Identities=14% Similarity=0.115 Sum_probs=162.3
Q ss_pred HHHHHHHHHHcCCCChhhHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 003891 2 LVASYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCY 81 (788)
Q Consensus 2 Ai~~~~kaL~~~P~~~~a~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 81 (788)
|...|++||..+-.+... +...+.+-++..+...|...+++++..-|.-...|+....+-..+|+...|.+.|
T Consensus 92 ARSv~ERALdvd~r~itL-------WlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~gaRqif 164 (677)
T KOG1915|consen 92 ARSVFERALDVDYRNITL-------WLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIAGARQIF 164 (677)
T ss_pred HHHHHHHHHhcccccchH-------HHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccHHHHHHH
Confidence 567788888888777776 5555666777788888888888888888887778887777777788888888888
Q ss_pred HHHHHhCCCC--------------------------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHH
Q 003891 82 EKAALERPMY--------------------------------AEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAK 129 (788)
Q Consensus 82 ~kal~~~p~~--------------------------------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 129 (788)
++-++..|+. ...|...+..-.+.|+...|...|++|++...++...-
T Consensus 165 erW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e 244 (677)
T KOG1915|consen 165 ERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAE 244 (677)
T ss_pred HHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHH
Confidence 8777766651 22344444444555566666666666655544322110
Q ss_pred HHHHHHHHHhhhhhhhcCCHHHHHHH--------------------------------------------HHHHHHhCCC
Q 003891 130 NNMAIALTDLGTKVKLEGDINQGVAY--------------------------------------------YKKALYYNWH 165 (788)
Q Consensus 130 ~~la~~l~~lg~~~~~~g~~~~A~~~--------------------------------------------~~~al~~~p~ 165 (788)
. ++...+.....++.++.|... |++.++.+|.
T Consensus 245 ~----lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~ 320 (677)
T KOG1915|consen 245 I----LFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPY 320 (677)
T ss_pred H----HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCC
Confidence 0 001111111111222222222 2333334555
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCH---------HHHHHHHH-HHHHcCCHHHHHHHHHHHHhhCCCC-
Q 003891 166 YADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCA---------EACNNLGV-IYKDRDNLDKAVECYQMALSIKPNF- 234 (788)
Q Consensus 166 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---------~~~~~la~-~~~~~g~~~eA~~~~~~al~~~p~~- 234 (788)
+.++|+..-.+....|+.+.-.+.|++|+...|... ..|.+.+. .-....+.+.+.+.|+.++++-|..
T Consensus 321 nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lIPHkk 400 (677)
T KOG1915|consen 321 NYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDLIPHKK 400 (677)
T ss_pred CchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCccc
Confidence 556666666666666666666666666665544321 11112111 0112345555555555555554432
Q ss_pred ---HHHHHHHHHH---------------------------------HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 003891 235 ---SQSLNNLGVV---------------------------------YTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVL 278 (788)
Q Consensus 235 ---~~~~~~la~~---------------------------------~~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~ 278 (788)
+.+|...|.. -.++++++....+|++.++..|.+..+|...|.+
T Consensus 401 FtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~kyaEl 480 (677)
T KOG1915|consen 401 FTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPENCYAWSKYAEL 480 (677)
T ss_pred chHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHHHHHH
Confidence 2233333333 3445556666666666666666666666666666
Q ss_pred HHHcCCHHHHHHHHHHHHhh
Q 003891 279 YRDAGSISLAIDAYEQCLKI 298 (788)
Q Consensus 279 ~~~~g~~~eA~~~~~~al~l 298 (788)
-..+|+.+.|...|+-|++.
T Consensus 481 E~~LgdtdRaRaifelAi~q 500 (677)
T KOG1915|consen 481 ETSLGDTDRARAIFELAISQ 500 (677)
T ss_pred HHHhhhHHHHHHHHHHHhcC
Confidence 66666666666666666654
No 128
>TIGR02149 glgA_Coryne glycogen synthase, Corynebacterium family. This model describes Corynebacterium glutamicum GlgA and closely related proteins in several other species. This enzyme is required for glycogen biosynthesis and appears to replace the distantly related TIGR02095 family of ADP-glucose type glycogen synthase in Corynebacterium glutamicum, Mycobacterium tuberculosis, Bifidobacterium longum, and Streptomyces coelicolor.
Probab=99.39 E-value=7.5e-12 Score=138.49 Aligned_cols=181 Identities=13% Similarity=0.095 Sum_probs=138.7
Q ss_pred CCCCCCCeEEEecCCC--CcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcC-CcCC
Q 003891 520 PALTNGFITFGSFNNL--AKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLP-LILL 596 (788)
Q Consensus 520 ~~~~~~~~~f~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~~~~l~~~~~~~gi~~~rv~~~~-~~~~ 596 (788)
.+++++.++|+.++++ .|..+.+++++.++. ++.+|+++|++...+...+.+++.+...+...++++|.+ .++
T Consensus 195 ~~~~~~~~~i~~~Grl~~~Kg~~~li~a~~~l~---~~~~l~i~g~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~- 270 (388)
T TIGR02149 195 YGIDRSRPYILFVGRITRQKGVPHLLDAVHYIP---KDVQVVLCAGAPDTPEVAEEVRQAVALLDRNRTGIIWINKMLP- 270 (388)
T ss_pred hCCCCCceEEEEEcccccccCHHHHHHHHHHHh---hcCcEEEEeCCCCcHHHHHHHHHHHHHhccccCceEEecCCCC-
Confidence 3456677788888877 789999999988774 567888877664555567788888888888656788764 555
Q ss_pred cHHHHHhcccccEeecCCCC-CCchhHHHHhhhCCceeecCCCccCccchhHHHhhhCCccccc--CCH------HHHHH
Q 003891 597 NHDHMQAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIA--KNE------DEYVQ 667 (788)
Q Consensus 597 ~~~~~~~~~~~Dv~Ld~~~~-~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l~~~gl~~~ia--~~~------~~y~~ 667 (788)
.++....|+.+|++|-|+.+ +.|.+.+|||++|+|||+.....+.. ++. -|..+++. .|. +++++
T Consensus 271 ~~~~~~~~~~aDv~v~ps~~e~~g~~~lEA~a~G~PvI~s~~~~~~e-----~i~-~~~~G~~~~~~~~~~~~~~~~l~~ 344 (388)
T TIGR02149 271 KEELVELLSNAEVFVCPSIYEPLGIVNLEAMACGTPVVASATGGIPE-----VVV-DGETGFLVPPDNSDADGFQAELAK 344 (388)
T ss_pred HHHHHHHHHhCCEEEeCCccCCCChHHHHHHHcCCCEEEeCCCCHHH-----Hhh-CCCceEEcCCCCCcccchHHHHHH
Confidence 68899999999999999977 66899999999999999843221111 111 13333343 344 78999
Q ss_pred HHHHHhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHH
Q 003891 668 LALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRNM 712 (788)
Q Consensus 668 ~a~~l~~d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ 712 (788)
...++.+|++.++.|+++.++...+. |+++.+++++.+.|+++
T Consensus 345 ~i~~l~~~~~~~~~~~~~a~~~~~~~--~s~~~~~~~~~~~y~~~ 387 (388)
T TIGR02149 345 AINILLADPELAKKMGIAGRKRAEEE--FSWGSIAKKTVEMYRKV 387 (388)
T ss_pred HHHHHHhCHHHHHHHHHHHHHHHHHh--CCHHHHHHHHHHHHHhh
Confidence 99999999999999999988876544 99999999999999876
No 129
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases. ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans.
Probab=99.39 E-value=5e-12 Score=140.13 Aligned_cols=175 Identities=21% Similarity=0.171 Sum_probs=137.2
Q ss_pred CCCCCCeEEEecCCC--CcCCHHHHHHHHHHHhHc---CCcEEEEecCCCCC----HHHHHHHHHHHHH-cCCCCCcEEE
Q 003891 521 ALTNGFITFGSFNNL--AKITPKVLQVWARILCAV---PNSRLVVKCKPFCC----DSVRHRFLSTLEQ-LGLESLRVDL 590 (788)
Q Consensus 521 ~~~~~~~~f~~~~~~--~K~~~~~~~~~~~il~~~---p~~~l~l~~~~~~~----~~~~~~l~~~~~~-~gi~~~rv~~ 590 (788)
..+++.++|++++++ .|..+.+++++.++.... |+.+|+++|++... ....+.+++.+++ .|++ ++|.|
T Consensus 206 ~~~~~~~~i~~~grl~~~Kg~~~ll~a~~~l~~~~~~~~~~~l~i~G~~~~~~~~~~~~~~~l~~~~~~~~~l~-~~V~f 284 (392)
T cd03805 206 IPKSGKKTFLSINRFERKKNIALAIEAFAILKDKLAEFKNVRLVIAGGYDPRVAENVEYLEELQRLAEELLLLE-DQVIF 284 (392)
T ss_pred ccCCCceEEEEEeeecccCChHHHHHHHHHHHhhcccccCeEEEEEcCCCCCCchhHHHHHHHHHHHHHhcCCC-ceEEE
Confidence 345667888888876 899999999999999887 89999999876321 1234678888888 8998 99999
Q ss_pred cCCcCCcHHHHHhcccccEeecCCCC-CCchhHHHHhhhCCceeecCCCccCccchhHHHhhhCCcc-cccCCHHHHHHH
Q 003891 591 LPLILLNHDHMQAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKH-LIAKNEDEYVQL 668 (788)
Q Consensus 591 ~~~~~~~~~~~~~~~~~Dv~Ld~~~~-~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l~~~gl~~-~ia~~~~~y~~~ 668 (788)
.|.++ .++....|..+|++|-|+.+ +.|.+.+|||++|+|||+........ ++.. |-.+ ++..|++++++.
T Consensus 285 ~g~~~-~~~~~~~l~~ad~~l~~s~~E~~g~~~lEAma~G~PvI~s~~~~~~e-----~i~~-~~~g~~~~~~~~~~a~~ 357 (392)
T cd03805 285 LPSIS-DSQKELLLSSARALLYTPSNEHFGIVPLEAMYAGKPVIACNSGGPLE-----TVVD-GETGFLCEPTPEEFAEA 357 (392)
T ss_pred eCCCC-hHHHHHHHhhCeEEEECCCcCCCCchHHHHHHcCCCEEEECCCCcHH-----Hhcc-CCceEEeCCCHHHHHHH
Confidence 99988 67778899999999988766 56899999999999999844322222 1221 2233 345689999999
Q ss_pred HHHHhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHH
Q 003891 669 ALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALGL 705 (788)
Q Consensus 669 a~~l~~d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~ 705 (788)
...+..|++.+..++++.++.+.+. |+++.++++|
T Consensus 358 i~~l~~~~~~~~~~~~~a~~~~~~~--~s~~~~~~~~ 392 (392)
T cd03805 358 MLKLANDPDLADRMGAAGRKRVKEK--FSTEAFAERL 392 (392)
T ss_pred HHHHHhChHHHHHHHHHHHHHHHHh--cCHHHHhhhC
Confidence 9999999999999999998877544 8888887653
No 130
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.39 E-value=4.8e-11 Score=116.76 Aligned_cols=176 Identities=23% Similarity=0.224 Sum_probs=126.0
Q ss_pred HHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHH
Q 003891 111 AIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFY 190 (788)
Q Consensus 111 A~~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 190 (788)
+...+-+....+|++..+ .+++..+.. .|+-+++..+..++...+|.+......+|......|++.+|+..+
T Consensus 52 a~~al~~~~~~~p~d~~i-~~~a~a~~~-------~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~ 123 (257)
T COG5010 52 AAAALGAAVLRNPEDLSI-AKLATALYL-------RGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVL 123 (257)
T ss_pred HHHHHHHHHhcCcchHHH-HHHHHHHHh-------cccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHH
Confidence 444455555556665544 333333333 446666666666666666777666666777777777777777777
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 003891 191 ELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAE 270 (788)
Q Consensus 191 ~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~ 270 (788)
+++....|+++++|..+|.+|.+.|++++|...|.+++++.|+++.+..|+|..|.-.|+++.|..++..+....+.+..
T Consensus 124 rkA~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~ 203 (257)
T COG5010 124 RKAARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSR 203 (257)
T ss_pred HHHhccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchH
Confidence 77777777777777777777777777777777777777777777777777777777778888887777777777777777
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHH
Q 003891 271 AYNNLGVLYRDAGSISLAIDAYEQ 294 (788)
Q Consensus 271 ~~~~la~~~~~~g~~~eA~~~~~~ 294 (788)
+..+++.+...+|++++|...-.+
T Consensus 204 v~~NLAl~~~~~g~~~~A~~i~~~ 227 (257)
T COG5010 204 VRQNLALVVGLQGDFREAEDIAVQ 227 (257)
T ss_pred HHHHHHHHHhhcCChHHHHhhccc
Confidence 777777777778887777765544
No 131
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.39 E-value=1.4e-10 Score=112.28 Aligned_cols=184 Identities=19% Similarity=0.138 Sum_probs=123.1
Q ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHhCCCCHH
Q 003891 89 PMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYAD 168 (788)
Q Consensus 89 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~ 168 (788)
++....+-....+....|+.+.|..++++.....|++.......+..+ ...|++++|+++|+..++.+|.+..
T Consensus 49 ~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~l-------Ea~~~~~~A~e~y~~lL~ddpt~~v 121 (289)
T KOG3060|consen 49 DEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLL-------EATGNYKEAIEYYESLLEDDPTDTV 121 (289)
T ss_pred chHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHH-------HHhhchhhHHHHHHHHhccCcchhH
Confidence 334445555555666666666777777666666666654433333332 2345677777777777777776666
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Q 003891 169 AMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQ 248 (788)
Q Consensus 169 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~ 248 (788)
.+...-.+...+|+.-+|++.+...++..+.+.++|..++.+|...|+|++|.-||++.+-+.|.++..+..+|.+++-+
T Consensus 122 ~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~ 201 (289)
T KOG3060|consen 122 IRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQ 201 (289)
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHH
Confidence 66666666667777777777777777777777777777777777777777777777777777777777777777777665
Q ss_pred C---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 003891 249 G---KMDAAAEMIEKAIAANPTYAEAYNNLGVLY 279 (788)
Q Consensus 249 g---~~~eA~~~l~kal~~~p~~~~~~~~la~~~ 279 (788)
| ++.-|.++|.++++++|.+..+++.+-.+.
T Consensus 202 gg~eN~~~arkyy~~alkl~~~~~ral~GI~lc~ 235 (289)
T KOG3060|consen 202 GGAENLELARKYYERALKLNPKNLRALFGIYLCG 235 (289)
T ss_pred hhHHHHHHHHHHHHHHHHhChHhHHHHHHHHHHH
Confidence 5 456677777777777776666666554443
No 132
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.38 E-value=2.2e-10 Score=115.19 Aligned_cols=291 Identities=16% Similarity=0.098 Sum_probs=192.7
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--------------hCC--
Q 003891 26 VLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAAL--------------ERP-- 89 (788)
Q Consensus 26 ~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~--------------~~p-- 89 (788)
+-..+|.+++..|+|++|+..|.-+.+.+.-+.+.+.+++.+++.+|.|.+|.....++-+ ++.
T Consensus 59 ~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~pL~~RLlfhlahklndEk 138 (557)
T KOG3785|consen 59 LQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEKAPKTPLCIRLLFHLAHKLNDEK 138 (557)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCcHH
Confidence 3556788999999999999999999988777889999999999999999999998877621 111
Q ss_pred ----------CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHH
Q 003891 90 ----------MYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKA 159 (788)
Q Consensus 90 ----------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~a 159 (788)
+..+-...++.+.+..-.|++|++.|++.+.-+|+.......++.+++. ..-++-+.+.+.--
T Consensus 139 ~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyK-------lDYydvsqevl~vY 211 (557)
T KOG3785|consen 139 RILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYK-------LDYYDVSQEVLKVY 211 (557)
T ss_pred HHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHh-------cchhhhHHHHHHHH
Confidence 1123345567777777889999999999999888876554455555444 45677777777777
Q ss_pred HHhCCCCHHHHHHHHHHHHHc--CC----------------hHHHHHHHHH----------HHhcCCC----CHHHHHHH
Q 003891 160 LYYNWHYADAMYNLGVAYGEM--LK----------------FDMAIVFYEL----------AFHFNPH----CAEACNNL 207 (788)
Q Consensus 160 l~~~p~~~~~~~~la~~~~~~--g~----------------~~~A~~~~~~----------al~~~p~----~~~~~~~l 207 (788)
+...|+..-+...++...++. |+ |+.+..+++. +++.-|. -+++..++
T Consensus 212 L~q~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL 291 (557)
T KOG3785|consen 212 LRQFPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNL 291 (557)
T ss_pred HHhCCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhh
Confidence 777777766655555444332 11 1111111111 1111121 25566667
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----------------------------------------
Q 003891 208 GVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTV---------------------------------------- 247 (788)
Q Consensus 208 a~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~---------------------------------------- 247 (788)
...|.++++.++|+...+. ++|..+.-+...|.+...
T Consensus 292 ~iYyL~q~dVqeA~~L~Kd---l~PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~ 368 (557)
T KOG3785|consen 292 IIYYLNQNDVQEAISLCKD---LDPTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASY 368 (557)
T ss_pred eeeecccccHHHHHHHHhh---cCCCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHH
Confidence 7777777777777666543 355555544444444444
Q ss_pred ---cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhhHHhHHHHhhhccCCCchHH
Q 003891 248 ---QGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKL 324 (788)
Q Consensus 248 ---~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~a~~~~lla~~~l~~g~~~~~ 324 (788)
..++++-+.+++..-...-++....+++++++...|++.+|.+.|-+.-..+-.+. ..+..+++.+|+..+..+-+
T Consensus 369 fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N~AQAk~atgny~eaEelf~~is~~~ikn~-~~Y~s~LArCyi~nkkP~lA 447 (557)
T KOG3785|consen 369 FFLSFQFDDVLTYLNSIESYFTNDDDFNLNLAQAKLATGNYVEAEELFIRISGPEIKNK-ILYKSMLARCYIRNKKPQLA 447 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCcchhhhHHHHHHHHhcChHHHHHHHhhhcChhhhhh-HHHHHHHHHHHHhcCCchHH
Confidence 44455555555555445556666778999999999999999999987654332232 33445688889888887766
Q ss_pred HHH
Q 003891 325 FEA 327 (788)
Q Consensus 325 ~~~ 327 (788)
|+.
T Consensus 448 W~~ 450 (557)
T KOG3785|consen 448 WDM 450 (557)
T ss_pred HHH
Confidence 654
No 133
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.38 E-value=9.6e-12 Score=135.65 Aligned_cols=314 Identities=12% Similarity=0.048 Sum_probs=181.3
Q ss_pred HhhhhhhcccCCCceEEEEEeccccCChhhHHHHHHHhhhCCeEEEcc--CCCHHHHH-HHHHhCCCcEEEeCCCCCCCC
Q 003891 371 YFIEAPLVYHDYQNYKVVVYSAVVKADAKTIRFREKVMKKGGIWRDIY--GIDEKKVA-AMVREDKIDILVELTGHTANN 447 (788)
Q Consensus 371 ~~~~~~l~~~dr~~fev~~Y~~~~~~D~~t~~~r~~~~~~~~~~~~~~--~~~~~~~a-~~i~~d~idilvdl~g~t~~~ 447 (788)
.++..+.....+.+++|.+++......................+..+. ..+..-.. -.+...++||++--.......
T Consensus 18 ~~~~~l~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dii~~~~~~~~~~ 97 (357)
T cd03795 18 QVIRDLAEGLAARGIEVAVLCASPEPKGRDEERNGHRVIRAPSLLNVASTPFSPSFFKQLKKLAKKADVIHLHFPNPLAD 97 (357)
T ss_pred HHHHHHHHHHHhCCCceEEEecCCCCcchhhhccCceEEEeecccccccccccHHHHHHHHhcCCCCCEEEEecCcchHH
Confidence 445566677777789999887764322111100000000000011111 11111111 115678999987433222222
Q ss_pred cccccccCCCCeEEecccCCCCCC-------------CCCccEEEecCCCCCcC--ccCCCccceEEcCCCccccCCCCC
Q 003891 448 KLGMMACQPAPVQVTWIGYPNTTG-------------LPTIDYRITDSLADPPE--TKQKHVEELIRLPECFLCYTPSPE 512 (788)
Q Consensus 448 ~~~~~a~r~Apvq~~~~g~~~ttg-------------~~~~Dy~i~d~~~~p~~--~~~~~~e~l~~lp~~~~~~~~~~~ 512 (788)
....+..+..|+-++|-+...... +...|.+|+..-..-.. ....+.+++..+|++.-.-...+.
T Consensus 98 ~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~s~~~~~~~~~~~~~~~~~~~i~~gi~~~~~~~~ 177 (357)
T cd03795 98 LALLLLPRKKPVVVHWHSDIVKQKLLLKLYRPLQRRFLRRADAIVATSPNYAETSPVLRRFRDKVRVIPLGLDPARYPRP 177 (357)
T ss_pred HHHHHhccCceEEEEEcChhhccchhhhhhhHHHHHHHHhcCEEEeCcHHHHHHHHHhcCCccceEEecCCCChhhcCCc
Confidence 222222234565555543222211 12245555421100000 112344778888865321000000
Q ss_pred CCCCCCCCCCCCCCeEEEecCCC--CcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEE
Q 003891 513 AGPVCPTPALTNGFITFGSFNNL--AKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDL 590 (788)
Q Consensus 513 ~~~~~~~~~~~~~~~~f~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~~~~l~~~~~~~gi~~~rv~~ 590 (788)
..........+.+.++++++++. .|....+++++.++. +.+|+++|.| +....+.+.+++.+.. ++|.|
T Consensus 178 ~~~~~~~~~~~~~~~~i~~~G~~~~~K~~~~li~a~~~l~----~~~l~i~G~g----~~~~~~~~~~~~~~~~-~~V~~ 248 (357)
T cd03795 178 DALEEAIWRRAAGRPFFLFVGRLVYYKGLDVLLEAAAALP----DAPLVIVGEG----PLEAELEALAAALGLL-DRVRF 248 (357)
T ss_pred chhhhHhhcCCCCCcEEEEecccccccCHHHHHHHHHhcc----CcEEEEEeCC----hhHHHHHHHHHhcCCc-ceEEE
Confidence 00000012234556677777765 888888888877665 7899999877 5666777777788988 89999
Q ss_pred cCCcCCcHHHHHhcccccEeecCCC---CCCchhHHHHhhhCCceeecCCCccCccchhHHHhhhCCccccc--CCHHHH
Q 003891 591 LPLILLNHDHMQAYSLMDISLDTFP---YAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIA--KNEDEY 665 (788)
Q Consensus 591 ~~~~~~~~~~~~~~~~~Dv~Ld~~~---~~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l~~~gl~~~ia--~~~~~y 665 (788)
.|.++ .++....|+.||+++-|+. .+.|.+++|||++|+|||+-....... .+..-|-.+++. .|.+++
T Consensus 249 ~g~v~-~~~~~~~~~~ad~~i~ps~~~~e~~g~~~~Ea~~~g~Pvi~~~~~~~~~-----~i~~~~~~g~~~~~~d~~~~ 322 (357)
T cd03795 249 LGRLD-DEEKAALLAACDVFVFPSVERSEAFGIVLLEAMAFGKPVISTEIGTGGS-----YVNLHGVTGLVVPPGDPAAL 322 (357)
T ss_pred cCCCC-HHHHHHHHHhCCEEEeCCcccccccchHHHHHHHcCCCEEecCCCCchh-----HHhhCCCceEEeCCCCHHHH
Confidence 99998 6788899999999998874 366889999999999999843221111 111113344443 589999
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHHHhhcCCCCChHHH
Q 003891 666 VQLALQLASDVTALANLRMSLRDLMSKSPVCDGQNF 701 (788)
Q Consensus 666 ~~~a~~l~~d~~~~~~~r~~~~~~~~~~~~~~~~~~ 701 (788)
++....+.+|++.++.++++.++.+.+. |+.+.+
T Consensus 323 ~~~i~~l~~~~~~~~~~~~~~~~~~~~~--~s~~~~ 356 (357)
T cd03795 323 AEAIRRLLEDPELRERLGEAARERAEEE--FTADRM 356 (357)
T ss_pred HHHHHHHHHCHHHHHHHHHHHHHHHHHh--cchHhh
Confidence 9999999999999999999999887543 666554
No 134
>cd04949 GT1_gtfA_like This family is most closely related to the GT1 family of glycosyltransferases and is named after gtfA in Streptococcus gordonii, where it plays a role in the O-linked glycosylation of GspB, a cell surface glycoprotein involved in platelet binding. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltra
Probab=99.38 E-value=8.4e-12 Score=137.30 Aligned_cols=162 Identities=17% Similarity=0.176 Sum_probs=126.1
Q ss_pred CeEEEecCC--CCcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHHHHh
Q 003891 526 FITFGSFNN--LAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQA 603 (788)
Q Consensus 526 ~~~f~~~~~--~~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~~~~l~~~~~~~gi~~~rv~~~~~~~~~~~~~~~ 603 (788)
..+++++++ ..|..+.+++++.++....|+.+|.++|.+ +....+....+..|+. ++|.|.|.. .+....
T Consensus 204 ~~~i~~vgrl~~~K~~~~li~a~~~l~~~~~~~~l~i~G~g----~~~~~~~~~~~~~~~~-~~v~~~g~~---~~~~~~ 275 (372)
T cd04949 204 PHKIITVARLAPEKQLDQLIKAFAKVVKQVPDATLDIYGYG----DEEEKLKELIEELGLE-DYVFLKGYT---RDLDEV 275 (372)
T ss_pred CCeEEEEEccCcccCHHHHHHHHHHHHHhCCCcEEEEEEeC----chHHHHHHHHHHcCCc-ceEEEcCCC---CCHHHH
Confidence 345555665 489999999999999999999999999977 3456667777888997 899999953 467778
Q ss_pred cccccEeecCCCC-CCchhHHHHhhhCCceeecCCCccCccchhHHHhhhCCcccccC--CHHHHHHHHHHHhcCHHHHH
Q 003891 604 YSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIAK--NEDEYVQLALQLASDVTALA 680 (788)
Q Consensus 604 ~~~~Dv~Ld~~~~-~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l~~~gl~~~ia~--~~~~y~~~a~~l~~d~~~~~ 680 (788)
|+.+|++++|+.+ +.|.+.+|||++|+|||+..... |..-+..-|..+++.+ |.+++++....+.+|++.++
T Consensus 276 ~~~ad~~v~~S~~Eg~~~~~lEAma~G~PvI~~~~~~-----g~~~~v~~~~~G~lv~~~d~~~la~~i~~ll~~~~~~~ 350 (372)
T cd04949 276 YQKAQLSLLTSQSEGFGLSLMEALSHGLPVISYDVNY-----GPSEIIEDGENGYLVPKGDIEALAEAIIELLNDPKLLQ 350 (372)
T ss_pred HhhhhEEEecccccccChHHHHHHhCCCCEEEecCCC-----CcHHHcccCCCceEeCCCcHHHHHHHHHHHHcCHHHHH
Confidence 8889999999987 67999999999999999843110 1111222255666665 99999999999999999999
Q ss_pred HHHHHHHHHhhcCCCCChHHHHH
Q 003891 681 NLRMSLRDLMSKSPVCDGQNFAL 703 (788)
Q Consensus 681 ~~r~~~~~~~~~~~~~~~~~~~~ 703 (788)
.++++.++.. + -|+.+.+++
T Consensus 351 ~~~~~a~~~~-~--~~s~~~~~~ 370 (372)
T cd04949 351 KFSEAAYENA-E--RYSEENVWE 370 (372)
T ss_pred HHHHHHHHHH-H--HhhHHHHHh
Confidence 9999988763 2 266666554
No 135
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.37 E-value=1.7e-11 Score=113.70 Aligned_cols=119 Identities=14% Similarity=0.147 Sum_probs=99.8
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 003891 188 VFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPT 267 (788)
Q Consensus 188 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~ 267 (788)
+.+++++..+|++......+|..+...|++++|+..+++++..+|.++.++..+|.++...|++++|+.+++++++.+|+
T Consensus 4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~ 83 (135)
T TIGR02552 4 ATLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPD 83 (135)
T ss_pred hhHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 35677888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhhH
Q 003891 268 YAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAG 306 (788)
Q Consensus 268 ~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~a~ 306 (788)
++..++.+|.++...|++++|+..|+++++++|++....
T Consensus 84 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 122 (135)
T TIGR02552 84 DPRPYFHAAECLLALGEPESALKALDLAIEICGENPEYS 122 (135)
T ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHH
Confidence 888888888888888888888888888888888776643
No 136
>PLN02846 digalactosyldiacylglycerol synthase
Probab=99.37 E-value=7e-12 Score=137.68 Aligned_cols=203 Identities=11% Similarity=0.000 Sum_probs=139.4
Q ss_pred ecCCCCCcCccCCCccceEEcCCCccc---cCCCCCCCCCCCCCCCCCCC--eEEEecCCC--CcCCHHHHHHHHHHHhH
Q 003891 480 TDSLADPPETKQKHVEELIRLPECFLC---YTPSPEAGPVCPTPALTNGF--ITFGSFNNL--AKITPKVLQVWARILCA 552 (788)
Q Consensus 480 ~d~~~~p~~~~~~~~e~l~~lp~~~~~---~~~~~~~~~~~~~~~~~~~~--~~f~~~~~~--~K~~~~~~~~~~~il~~ 552 (788)
+|.++.|......+.+..+..++ ++. |.|.... ....+. +++. .+++.++|+ .|..+.+++++.++.+.
T Consensus 181 ~d~vi~pS~~~~~l~~~~i~~v~-GVd~~~f~~~~~~--~~~~~~-~~~~~~~~~l~vGRL~~eK~~~~Li~a~~~l~~~ 256 (462)
T PLN02846 181 CHKVIRLSAATQDYPRSIICNVH-GVNPKFLEIGKLK--LEQQKN-GEQAFTKGAYYIGKMVWSKGYKELLKLLHKHQKE 256 (462)
T ss_pred cCEEEccCHHHHHHhhCEEecCc-eechhhcCCCccc--HhhhcC-CCCCcceEEEEEecCcccCCHHHHHHHHHHHHhh
Confidence 45566665544445555555442 332 2332211 111111 2332 346677877 99999999999999998
Q ss_pred cCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHHHHhcccccEeecCCCC-CCchhHHHHhhhCCc
Q 003891 553 VPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPY-AGTTTTCESLYMGVP 631 (788)
Q Consensus 553 ~p~~~l~l~~~~~~~~~~~~~l~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~~Dv~Ld~~~~-~g~~t~~eal~~GvP 631 (788)
.|+.+|+|+|+| +.++.|++.+.+.|++ .++ |.|... .++ .|..+|||+-|+.+ +.|++++|||+||+|
T Consensus 257 ~~~~~l~ivGdG----p~~~~L~~~a~~l~l~-~~v-f~G~~~-~~~---~~~~~DvFv~pS~~Et~g~v~lEAmA~G~P 326 (462)
T PLN02846 257 LSGLEVDLYGSG----EDSDEVKAAAEKLELD-VRV-YPGRDH-ADP---LFHDYKVFLNPSTTDVVCTTTAEALAMGKI 326 (462)
T ss_pred CCCeEEEEECCC----ccHHHHHHHHHhcCCc-EEE-ECCCCC-HHH---HHHhCCEEEECCCcccchHHHHHHHHcCCc
Confidence 999999999998 7889999999999987 555 888643 443 55557999999988 779999999999999
Q ss_pred eeecCCCccCccchhHHHhhhCCcccccCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHH
Q 003891 632 CVTMAGSVHAHNVGVSLLTKVGLKHLIAKNEDEYVQLALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRN 711 (788)
Q Consensus 632 vvt~~g~~~~~r~~~~~l~~~gl~~~ia~~~~~y~~~a~~l~~d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~~ 711 (788)
||+..... ..++.. |-..+...|.+++++....+..++. ..++...++ .|+++..+++|++.|+-
T Consensus 327 VVa~~~~~------~~~v~~-~~ng~~~~~~~~~a~ai~~~l~~~~--~~~~~~a~~------~~SWe~~~~~l~~~~~~ 391 (462)
T PLN02846 327 VVCANHPS------NEFFKQ-FPNCRTYDDGKGFVRATLKALAEEP--APLTDAQRH------ELSWEAATERFLRVADL 391 (462)
T ss_pred EEEecCCC------cceeec-CCceEecCCHHHHHHHHHHHHccCc--hhHHHHHHH------hCCHHHHHHHHHHHhcc
Confidence 99854221 122222 5555667899999999998887542 222333221 48899999988888863
No 137
>PLN02939 transferase, transferring glycosyl groups
Probab=99.36 E-value=2.4e-11 Score=140.55 Aligned_cols=179 Identities=11% Similarity=0.021 Sum_probs=132.4
Q ss_pred CCCCC---CCeEEEecCCC--CcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCc
Q 003891 520 PALTN---GFITFGSFNNL--AKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLI 594 (788)
Q Consensus 520 ~~~~~---~~~~f~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~~~~l~~~~~~~gi~~~rv~~~~~~ 594 (788)
.|++. +.++||+++|+ .|..+.+++++.+++. ++.+|+|+|.|. .......++....++|+. ++|.|.+..
T Consensus 770 lGL~~~d~d~pLIg~VGRL~~QKGiDlLleA~~~Ll~--~dvqLVIvGdGp-~~~~e~eL~~La~~l~l~-drV~FlG~~ 845 (977)
T PLN02939 770 LGLSSADASQPLVGCITRLVPQKGVHLIRHAIYKTAE--LGGQFVLLGSSP-VPHIQREFEGIADQFQSN-NNIRLILKY 845 (977)
T ss_pred hCCCcccccceEEEEeecCCcccChHHHHHHHHHHhh--cCCEEEEEeCCC-cHHHHHHHHHHHHHcCCC-CeEEEEecc
Confidence 45653 56789999987 8999999999998885 688999998762 123456788888889987 899999886
Q ss_pred CCcHHHHHhcccccEeecCCCC-CCchhHHHHhhhCCceeecCCCccCccchhH----------HHhhhCCcccc--cCC
Q 003891 595 LLNHDHMQAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGVS----------LLTKVGLKHLI--AKN 661 (788)
Q Consensus 595 ~~~~~~~~~~~~~Dv~Ld~~~~-~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~----------~l~~~gl~~~i--a~~ 661 (788)
. .......|..+|+||-|+-| +.|.|.+|||++|+|+|+ +++|+- ....-|..+++ ..|
T Consensus 846 d-e~lah~IYAaADIFLmPSr~EPfGLvqLEAMAyGtPPVV-------s~vGGL~DtV~d~d~e~i~~eg~NGfLf~~~D 917 (977)
T PLN02939 846 D-EALSHSIYAASDMFIIPSMFEPCGLTQMIAMRYGSVPIV-------RKTGGLNDSVFDFDDETIPVELRNGFTFLTPD 917 (977)
T ss_pred C-HHHHHHHHHhCCEEEECCCccCCcHHHHHHHHCCCCEEE-------ecCCCCcceeecCCccccccCCCceEEecCCC
Confidence 5 23334688999999999988 779999999999988776 444410 00000223333 247
Q ss_pred HHHHHHHHHHHh----cCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHH
Q 003891 662 EDEYVQLALQLA----SDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRNMWHR 715 (788)
Q Consensus 662 ~~~y~~~a~~l~----~d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~ 715 (788)
++++.+...++. .|++.+.+|+.+. +. ..|+++.+++++++.|+.+..+
T Consensus 918 ~eaLa~AL~rAL~~~~~dpe~~~~L~~~a---m~--~dFSWe~~A~qYeeLY~~ll~~ 970 (977)
T PLN02939 918 EQGLNSALERAFNYYKRKPEVWKQLVQKD---MN--IDFSWDSSASQYEELYQRAVAR 970 (977)
T ss_pred HHHHHHHHHHHHHHhccCHHHHHHHHHHH---HH--hcCCHHHHHHHHHHHHHHHHHh
Confidence 888776665544 4898888887643 22 3499999999999999999865
No 138
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=99.36 E-value=6.2e-11 Score=128.45 Aligned_cols=169 Identities=17% Similarity=0.139 Sum_probs=127.7
Q ss_pred CCCCeEEEecCCC--CcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHH
Q 003891 523 TNGFITFGSFNNL--AKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDH 600 (788)
Q Consensus 523 ~~~~~~f~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~~~~l~~~~~~~gi~~~rv~~~~~~~~~~~~ 600 (788)
+++.++|+.+++. .|..+.+++++.++.+..|+.+|+++|.+......... .+...+.. ++|.|.|. .++.
T Consensus 185 ~~~~~~i~~~G~~~~~k~~~~li~~~~~l~~~~~~~~l~i~G~~~~~~~~~~~---~~~~~~~~-~~v~~~g~---~~~~ 257 (359)
T cd03808 185 PEDDPVFLFVARLLKDKGIDELLEAARILKAKGPNVRLLLVGDGDEENPAAIL---EIEKLGLE-GRVEFLGF---RDDV 257 (359)
T ss_pred CCCCcEEEEEeccccccCHHHHHHHHHHHHhcCCCeEEEEEcCCCcchhhHHH---HHHhcCCc-ceEEEeec---cccH
Confidence 4456778888865 89999999999999888899999999876432222111 35566666 79999998 3567
Q ss_pred HHhcccccEeecCCCC-CCchhHHHHhhhCCceeecCCCccCccchhHHHhhhCCccccc--CCHHHHHHHHHHHhcCHH
Q 003891 601 MQAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIA--KNEDEYVQLALQLASDVT 677 (788)
Q Consensus 601 ~~~~~~~Dv~Ld~~~~-~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l~~~gl~~~ia--~~~~~y~~~a~~l~~d~~ 677 (788)
...|+.+|+++-|+.+ +.+++++|||++|+|||+-....... ++.. |-.+++. .|.+++++....+..|++
T Consensus 258 ~~~~~~adi~i~ps~~e~~~~~~~Ea~~~G~Pvi~s~~~~~~~-----~i~~-~~~g~~~~~~~~~~~~~~i~~l~~~~~ 331 (359)
T cd03808 258 PELLAAADVFVLPSYREGLPRVLLEAMAMGRPVIATDVPGCRE-----AVID-GVNGFLVPPGDAEALADAIERLIEDPE 331 (359)
T ss_pred HHHHHhccEEEecCcccCcchHHHHHHHcCCCEEEecCCCchh-----hhhc-CcceEEECCCCHHHHHHHHHHHHhCHH
Confidence 7888999999999876 66899999999999999854332221 2221 3334443 478999999999999999
Q ss_pred HHHHHHHHHHHHhhcCCCCChHHHHHHHH
Q 003891 678 ALANLRMSLRDLMSKSPVCDGQNFALGLE 706 (788)
Q Consensus 678 ~~~~~r~~~~~~~~~~~~~~~~~~~~~~e 706 (788)
.+..++++.++...+. |+.+.+++.++
T Consensus 332 ~~~~~~~~~~~~~~~~--~s~~~~~~~~~ 358 (359)
T cd03808 332 LRARMGQAARKRAEEE--FDEEIVVKKLL 358 (359)
T ss_pred HHHHHHHHHHHHHHHh--cCHHHHHHHhh
Confidence 9999999988875543 88888888775
No 139
>cd04946 GT1_AmsK_like This family is most closely related to the GT1 family of glycosyltransferases. AmsK is involved in the biosynthesis of amylovoran, which functions as a virulence factor. It functions as a glycosyl transferase which transfers galactose from UDP-galactose to a lipid-linked amylovoran-subunit precursor. The members of this family are found mainly in bacteria and Archaea.
Probab=99.36 E-value=8e-12 Score=138.69 Aligned_cols=166 Identities=14% Similarity=0.182 Sum_probs=129.2
Q ss_pred CCCeEEEecCCC--CcCCHHHHHHHHHHHhHcCCcE--EEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHH
Q 003891 524 NGFITFGSFNNL--AKITPKVLQVWARILCAVPNSR--LVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHD 599 (788)
Q Consensus 524 ~~~~~f~~~~~~--~K~~~~~~~~~~~il~~~p~~~--l~l~~~~~~~~~~~~~l~~~~~~~gi~~~rv~~~~~~~~~~~ 599 (788)
++.++|++++++ .|..+.+++++.++.+..|+.. +.++|+| +....+++.++..+.. ++|.|+|.++ .++
T Consensus 228 ~~~~~il~~Grl~~~Kg~~~li~a~~~l~~~~p~~~l~~~iiG~g----~~~~~l~~~~~~~~~~-~~V~f~G~v~-~~e 301 (407)
T cd04946 228 DDTLRIVSCSYLVPVKRVDLIIKALAALAKARPSIKIKWTHIGGG----PLEDTLKELAESKPEN-ISVNFTGELS-NSE 301 (407)
T ss_pred CCCEEEEEeeccccccCHHHHHHHHHHHHHhCCCceEEEEEEeCc----hHHHHHHHHHHhcCCC-ceEEEecCCC-hHH
Confidence 456778888866 8999999999999999888654 4567766 5667788888777876 8999999998 578
Q ss_pred HHHhccc--ccEeecCCCC-CCchhHHHHhhhCCceeecCCCccCccchh--HHHhhhCCccc-cc--CCHHHHHHHHHH
Q 003891 600 HMQAYSL--MDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGV--SLLTKVGLKHL-IA--KNEDEYVQLALQ 671 (788)
Q Consensus 600 ~~~~~~~--~Dv~Ld~~~~-~g~~t~~eal~~GvPvvt~~g~~~~~r~~~--~~l~~~gl~~~-ia--~~~~~y~~~a~~ 671 (788)
....|.. +|+++-|+.+ +.+.+++|||++|+|||+ +++|+ .++. -|-.++ +. .|.+++++...+
T Consensus 302 ~~~~~~~~~~~v~v~~S~~Eg~p~~llEAma~G~PVIa-------s~vgg~~e~i~-~~~~G~l~~~~~~~~~la~~I~~ 373 (407)
T cd04946 302 VYKLYKENPVDVFVNLSESEGLPVSIMEAMSFGIPVIA-------TNVGGTPEIVD-NGGNGLLLSKDPTPNELVSSLSK 373 (407)
T ss_pred HHHHHhhcCCCEEEeCCccccccHHHHHHHHcCCCEEe-------CCCCCcHHHhc-CCCcEEEeCCCCCHHHHHHHHHH
Confidence 8888754 7899988877 668899999999999998 44542 1111 132233 32 378999999999
Q ss_pred HhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHH
Q 003891 672 LASDVTALANLRMSLRDLMSKSPVCDGQNFALGL 705 (788)
Q Consensus 672 l~~d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~ 705 (788)
+.+|++.+..|+++.|+.+.+. |+.+...+.+
T Consensus 374 ll~~~~~~~~m~~~ar~~~~~~--f~~~~~~~~~ 405 (407)
T cd04946 374 FIDNEEEYQTMREKAREKWEEN--FNASKNYREF 405 (407)
T ss_pred HHhCHHHHHHHHHHHHHHHHHH--cCHHHhHHHh
Confidence 9999999999999999988654 8887766654
No 140
>TIGR03087 stp1 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=99.36 E-value=1.7e-11 Score=136.06 Aligned_cols=165 Identities=12% Similarity=0.092 Sum_probs=123.9
Q ss_pred CCCeEEEecCCC--CcCCHHHH----HHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCc
Q 003891 524 NGFITFGSFNNL--AKITPKVL----QVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLN 597 (788)
Q Consensus 524 ~~~~~f~~~~~~--~K~~~~~~----~~~~~il~~~p~~~l~l~~~~~~~~~~~~~l~~~~~~~gi~~~rv~~~~~~~~~ 597 (788)
.+..+++.++++ .|..+.++ ++|..+.+..|+.+|+++|.+. .. . +++++.. ++|.|+|.++
T Consensus 222 ~~~~~ilf~G~l~~~k~~~~l~~~~~~~~~~l~~~~p~~~l~ivG~g~----~~-~----~~~l~~~-~~V~~~G~v~-- 289 (397)
T TIGR03087 222 PGKRVLVFTGAMDYWPNIDAVVWFAERVFPAVRARRPAAEFYIVGAKP----SP-A----VRALAAL-PGVTVTGSVA-- 289 (397)
T ss_pred CCCcEEEEEEecCCccCHHHHHHHHHHHHHHHHHHCCCcEEEEECCCC----hH-H----HHHhccC-CCeEEeeecC--
Confidence 344556666765 67777665 6788888889999999999762 11 1 3344544 6899999976
Q ss_pred HHHHHhcccccEeecCCCC--CCchhHHHHhhhCCceeecCCCccCccchhH-HHhhhCCcccccCCHHHHHHHHHHHhc
Q 003891 598 HDHMQAYSLMDISLDTFPY--AGTTTTCESLYMGVPCVTMAGSVHAHNVGVS-LLTKVGLKHLIAKNEDEYVQLALQLAS 674 (788)
Q Consensus 598 ~~~~~~~~~~Dv~Ld~~~~--~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~-~l~~~gl~~~ia~~~~~y~~~a~~l~~ 674 (788)
+....|+.+|+++-|+.+ +.+++++|||+||+|||+.. ++.. +...-|..-+++.|.+++++...+|.+
T Consensus 290 -~~~~~~~~adv~v~Ps~~~eG~~~~~lEAma~G~PVV~t~-------~~~~~i~~~~~~g~lv~~~~~~la~ai~~ll~ 361 (397)
T TIGR03087 290 -DVRPYLAHAAVAVAPLRIARGIQNKVLEAMAMAKPVVASP-------EAAEGIDALPGAELLVAADPADFAAAILALLA 361 (397)
T ss_pred -CHHHHHHhCCEEEecccccCCcccHHHHHHHcCCCEEecC-------cccccccccCCcceEeCCCHHHHHHHHHHHHc
Confidence 456778889999998854 34668999999999999854 2211 111113333567899999999999999
Q ss_pred CHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHH
Q 003891 675 DVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYR 710 (788)
Q Consensus 675 d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~ 710 (788)
|++.+++|+++.|+.+.+. |+++..++.+++.|.
T Consensus 362 ~~~~~~~~~~~ar~~v~~~--fsw~~~~~~~~~~l~ 395 (397)
T TIGR03087 362 NPAEREELGQAARRRVLQH--YHWPRNLARLDALLE 395 (397)
T ss_pred CHHHHHHHHHHHHHHHHHh--CCHHHHHHHHHHHhc
Confidence 9999999999999887544 899999999999875
No 141
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=99.35 E-value=4.6e-11 Score=130.90 Aligned_cols=224 Identities=19% Similarity=0.151 Sum_probs=190.4
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Q 003891 57 YAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIAL 136 (788)
Q Consensus 57 ~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l 136 (788)
.......++..+...|-..+|+..|++. ..|.....||...|+..+|.....+-++.+| ++ ..|
T Consensus 397 ~Wq~q~~laell~slGitksAl~I~Erl--------emw~~vi~CY~~lg~~~kaeei~~q~lek~~-d~-------~ly 460 (777)
T KOG1128|consen 397 IWQLQRLLAELLLSLGITKSALVIFERL--------EMWDPVILCYLLLGQHGKAEEINRQELEKDP-DP-------RLY 460 (777)
T ss_pred cchHHHHHHHHHHHcchHHHHHHHHHhH--------HHHHHHHHHHHHhcccchHHHHHHHHhcCCC-cc-------hhH
Confidence 3455678899999999999999999984 5677889999999999999999999998444 43 344
Q ss_pred HHhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC
Q 003891 137 TDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDN 216 (788)
Q Consensus 137 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 216 (788)
..+|++.....-|++|.++.+.. +..+...+|......++|+++.++++..++++|-....|+.+|.+..+.++
T Consensus 461 c~LGDv~~d~s~yEkawElsn~~------sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek 534 (777)
T KOG1128|consen 461 CLLGDVLHDPSLYEKAWELSNYI------SARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEK 534 (777)
T ss_pred HHhhhhccChHHHHHHHHHhhhh------hHHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhh
Confidence 44554433333455555544432 345667777778889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003891 217 LDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCL 296 (788)
Q Consensus 217 ~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al 296 (788)
++.|.++|..++...|++.++|++++..|...++-.+|...++++++.+-++..+|.|...+..+.|.+++|++.|.+.+
T Consensus 535 ~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll 614 (777)
T KOG1128|consen 535 EQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLL 614 (777)
T ss_pred hHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred hhCCCC
Q 003891 297 KIDPDS 302 (788)
Q Consensus 297 ~l~p~~ 302 (788)
.+.-+.
T Consensus 615 ~~~~~~ 620 (777)
T KOG1128|consen 615 DLRKKY 620 (777)
T ss_pred Hhhhhc
Confidence 775443
No 142
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=99.35 E-value=8.9e-12 Score=135.53 Aligned_cols=166 Identities=20% Similarity=0.187 Sum_probs=124.9
Q ss_pred CCCCCeEEEecCCC--CcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHH
Q 003891 522 LTNGFITFGSFNNL--AKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHD 599 (788)
Q Consensus 522 ~~~~~~~f~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~~~~l~~~~~~~gi~~~rv~~~~~~~~~~~ 599 (788)
.+++.++|+.+++. .|..+.+++++.++.. |+.+|+++|.+. ......... +.. ++|.|.|.++ .++
T Consensus 187 ~~~~~~~i~~~G~~~~~k~~~~li~~~~~l~~--~~~~l~i~G~~~----~~~~~~~~~---~~~-~~v~~~g~~~-~~~ 255 (359)
T cd03823 187 PPGGRLRFGFIGQLTPHKGVDLLLEAFKRLPR--GDIELVIVGNGL----ELEEESYEL---EGD-PRVEFLGAYP-QEE 255 (359)
T ss_pred CCCCceEEEEEecCccccCHHHHHHHHHHHHh--cCcEEEEEcCch----hhhHHHHhh---cCC-CeEEEeCCCC-HHH
Confidence 45667788888866 7888899999988776 899999998762 222222211 554 7999999987 789
Q ss_pred HHHhcccccEeecCCC--CCCchhHHHHhhhCCceeecCCCccCccchhHHHhhhCCccccc--CCHHHHHHHHHHHhcC
Q 003891 600 HMQAYSLMDISLDTFP--YAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIA--KNEDEYVQLALQLASD 675 (788)
Q Consensus 600 ~~~~~~~~Dv~Ld~~~--~~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l~~~gl~~~ia--~~~~~y~~~a~~l~~d 675 (788)
....|+.+|+++-|+. .+.+.+++|||++|+|||+....... .++.. |..+++. .|.+++++....+.+|
T Consensus 256 ~~~~~~~ad~~i~ps~~~e~~~~~~~Ea~a~G~Pvi~~~~~~~~-----e~i~~-~~~g~~~~~~d~~~l~~~i~~l~~~ 329 (359)
T cd03823 256 IDDFYAEIDVLVVPSIWPENFPLVIREALAAGVPVIASDIGGMA-----ELVRD-GVNGLLFPPGDAEDLAAALERLIDD 329 (359)
T ss_pred HHHHHHhCCEEEEcCcccCCCChHHHHHHHCCCCEEECCCCCHH-----HHhcC-CCcEEEECCCCHHHHHHHHHHHHhC
Confidence 9999999999999985 36788999999999999984433221 12222 3234433 4589999999999999
Q ss_pred HHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHH
Q 003891 676 VTALANLRMSLRDLMSKSPVCDGQNFALGLESTYR 710 (788)
Q Consensus 676 ~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~ 710 (788)
++.++.++++.++... .+.+++++++.|+
T Consensus 330 ~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~ 358 (359)
T cd03823 330 PDLLERLRAGIEPPRS------IEDQAEEYLKLYR 358 (359)
T ss_pred hHHHHHHHHhHHHhhh------HHHHHHHHHHHhh
Confidence 9999999999887653 2788888888885
No 143
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.35 E-value=1.1e-10 Score=114.21 Aligned_cols=181 Identities=22% Similarity=0.240 Sum_probs=155.3
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhcCCHHHHH
Q 003891 74 YDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGV 153 (788)
Q Consensus 74 ~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~g~~~~A~ 153 (788)
...+...+-+....+|++..+ .+++..+...|+-+.+..+..++...+|.+...... +|......|++.+|+
T Consensus 49 ~~~a~~al~~~~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~-------~gk~~~~~g~~~~A~ 120 (257)
T COG5010 49 TQGAAAALGAAVLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAA-------QGKNQIRNGNFGEAV 120 (257)
T ss_pred hhHHHHHHHHHHhcCcchHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHH-------HHHHHHHhcchHHHH
Confidence 344666677777788888888 889999999999999999998888888887654433 455555677999999
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 003891 154 AYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPN 233 (788)
Q Consensus 154 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~ 233 (788)
..++++....|++.+++..+|.+|.+.|++++|...|.+++++.|.++.+..|+|..+.-.|+++.|..++.++....+.
T Consensus 121 ~~~rkA~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~a 200 (257)
T COG5010 121 SVLRKAARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAA 200 (257)
T ss_pred HHHHHHhccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999988888
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003891 234 FSQSLNNLGVVYTVQGKMDAAAEMIEKAI 262 (788)
Q Consensus 234 ~~~~~~~la~~~~~~g~~~eA~~~l~kal 262 (788)
+..+..+++.+...+|++++|.....+-+
T Consensus 201 d~~v~~NLAl~~~~~g~~~~A~~i~~~e~ 229 (257)
T COG5010 201 DSRVRQNLALVVGLQGDFREAEDIAVQEL 229 (257)
T ss_pred chHHHHHHHHHHhhcCChHHHHhhccccc
Confidence 89999999999999999999987766543
No 144
>cd03809 GT1_mtfB_like This family is most closely related to the GT1 family of glycosyltransferases. mtfB (mannosyltransferase B) in E. coli has been shown to direct the growth of the O9-specific polysaccharide chain. It transfers two mannoses into the position 3 of the previously synthesized polysaccharide.
Probab=99.34 E-value=3.1e-11 Score=131.82 Aligned_cols=170 Identities=18% Similarity=0.121 Sum_probs=128.6
Q ss_pred CCCCeEEEecCCC--CcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHH
Q 003891 523 TNGFITFGSFNNL--AKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDH 600 (788)
Q Consensus 523 ~~~~~~f~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~~~~l~~~~~~~gi~~~rv~~~~~~~~~~~~ 600 (788)
..+.++++.+++. .|..+.+++++.++....|+.+|++.|.+... .......+++.+.. ++|.|.|.++ .++.
T Consensus 192 ~~~~~~i~~~G~~~~~K~~~~~l~~~~~~~~~~~~~~l~i~G~~~~~---~~~~~~~~~~~~~~-~~v~~~g~~~-~~~~ 266 (365)
T cd03809 192 LLPRPYFLYVGTIEPRKNLERLLEAFARLPAKGPDPKLVIVGKRGWL---NEELLARLRELGLG-DRVRFLGYVS-DEEL 266 (365)
T ss_pred CCCCCeEEEeCCCccccCHHHHHHHHHHHHHhcCCCCEEEecCCccc---cHHHHHHHHHcCCC-CeEEECCCCC-hhHH
Confidence 3345566666765 79999999999999999889999999865322 22223333667876 8999999988 6888
Q ss_pred HHhcccccEeecCCCC-CCchhHHHHhhhCCceeecCCCccCccchhHHHhhhCCcccccCCHHHHHHHHHHHhcCHHHH
Q 003891 601 MQAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIAKNEDEYVQLALQLASDVTAL 679 (788)
Q Consensus 601 ~~~~~~~Dv~Ld~~~~-~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l~~~gl~~~ia~~~~~y~~~a~~l~~d~~~~ 679 (788)
...|..+|++|-|+-+ +.+.+.+|||++|+|||+.....+...++ ..|. -+...|.+++++...++.+|++.+
T Consensus 267 ~~~~~~~d~~l~ps~~e~~~~~~~Ea~a~G~pvI~~~~~~~~e~~~-----~~~~-~~~~~~~~~~~~~i~~l~~~~~~~ 340 (365)
T cd03809 267 AALYRGARAFVFPSLYEGFGLPVLEAMACGTPVIASNISSLPEVAG-----DAAL-YFDPLDPEALAAAIERLLEDPALR 340 (365)
T ss_pred HHHHhhhhhhcccchhccCCCCHHHHhcCCCcEEecCCCCccceec-----Ccee-eeCCCCHHHHHHHHHHHhcCHHHH
Confidence 9999999999999866 66889999999999999855443333221 1111 123568999999999999999999
Q ss_pred HHHHHHHHHHhhcCCCCChHHHHHHHH
Q 003891 680 ANLRMSLRDLMSKSPVCDGQNFALGLE 706 (788)
Q Consensus 680 ~~~r~~~~~~~~~~~~~~~~~~~~~~e 706 (788)
..+++..++... .|+++.+++.+.
T Consensus 341 ~~~~~~~~~~~~---~~sw~~~~~~~~ 364 (365)
T cd03809 341 EELRERGLARAK---RFSWEKTARRTL 364 (365)
T ss_pred HHHHHHHHHHHH---hCCHHHHHHHHh
Confidence 999998885432 388998887765
No 145
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=99.34 E-value=4.4e-11 Score=130.89 Aligned_cols=166 Identities=19% Similarity=0.142 Sum_probs=127.0
Q ss_pred eEEEecCCC--CcCCHHHHHHHHHHHhH-cCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHHHHh
Q 003891 527 ITFGSFNNL--AKITPKVLQVWARILCA-VPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQA 603 (788)
Q Consensus 527 ~~f~~~~~~--~K~~~~~~~~~~~il~~-~p~~~l~l~~~~~~~~~~~~~l~~~~~~~gi~~~rv~~~~~~~~~~~~~~~ 603 (788)
+.|++.... .|..+.++++|..+.+. .|+.+++++|.+.. ... .++. ++|.|+|.+++.++....
T Consensus 194 i~~~~~~~~~~~K~~~~ll~a~~~l~~~~~~~~~~~i~G~~~~----~~~-------~~~~-~~v~~~g~~~~~~~~~~~ 261 (365)
T cd03825 194 ILFGAVGGTDPRKGFDELIEALKRLAERWKDDIELVVFGASDP----EIP-------PDLP-FPVHYLGSLNDDESLALI 261 (365)
T ss_pred EEEEecCCCccccCHHHHHHHHHHhhhccCCCeEEEEeCCCch----hhh-------ccCC-CceEecCCcCCHHHHHHH
Confidence 445555544 89999999999877665 68899999887621 111 1555 789999998866677888
Q ss_pred cccccEeecCCCC-CCchhHHHHhhhCCceeecCCCccCccchhHHHhhhCCccccc--CCHHHHHHHHHHHhcCHHHHH
Q 003891 604 YSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIA--KNEDEYVQLALQLASDVTALA 680 (788)
Q Consensus 604 ~~~~Dv~Ld~~~~-~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l~~~gl~~~ia--~~~~~y~~~a~~l~~d~~~~~ 680 (788)
|+.+|+++-|+-+ +.|.+++|||++|+|||+.....+..-+. -+..+++. .|.+++++...++.+|++.+.
T Consensus 262 ~~~ad~~l~ps~~e~~g~~~~Eam~~g~PvI~~~~~~~~e~~~------~~~~g~~~~~~~~~~~~~~l~~l~~~~~~~~ 335 (365)
T cd03825 262 YSAADVFVVPSLQENFPNTAIEALACGTPVVAFDVGGIPDIVD------HGVTGYLAKPGDPEDLAEGIEWLLADPDERE 335 (365)
T ss_pred HHhCCEEEeccccccccHHHHHHHhcCCCEEEecCCCChhhee------CCCceEEeCCCCHHHHHHHHHHHHhCHHHHH
Confidence 9999999999866 77999999999999999855433332221 12234443 378999999999999999999
Q ss_pred HHHHHHHHHhhcCCCCChHHHHHHHHHHHHHH
Q 003891 681 NLRMSLRDLMSKSPVCDGQNFALGLESTYRNM 712 (788)
Q Consensus 681 ~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ 712 (788)
+++++.++.... .|+.+.+++.+++.|+++
T Consensus 336 ~~~~~~~~~~~~--~~s~~~~~~~~~~~y~~~ 365 (365)
T cd03825 336 ELGEAARELAEN--EFDSRVQAKRYLSLYEEL 365 (365)
T ss_pred HHHHHHHHHHHH--hcCHHHHHHHHHHHHhhC
Confidence 999999887643 389999999999999763
No 146
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=99.34 E-value=5.1e-11 Score=130.56 Aligned_cols=217 Identities=18% Similarity=0.141 Sum_probs=190.2
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC
Q 003891 27 LTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRG 106 (788)
Q Consensus 27 l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g 106 (788)
-..++..+...|-..+|+.+|++. ..|-....||...|+..+|..+..+-++ .|.++..|..+|.+.....
T Consensus 401 q~~laell~slGitksAl~I~Erl--------emw~~vi~CY~~lg~~~kaeei~~q~le-k~~d~~lyc~LGDv~~d~s 471 (777)
T KOG1128|consen 401 QRLLAELLLSLGITKSALVIFERL--------EMWDPVILCYLLLGQHGKAEEINRQELE-KDPDPRLYCLLGDVLHDPS 471 (777)
T ss_pred HHHHHHHHHHcchHHHHHHHHHhH--------HHHHHHHHHHHHhcccchHHHHHHHHhc-CCCcchhHHHhhhhccChH
Confidence 345677888889999999999884 5677889999999999999999999988 6777888888888877765
Q ss_pred CHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHH
Q 003891 107 DLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMA 186 (788)
Q Consensus 107 ~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A 186 (788)
-|++|.++.+... +.+...+|......++|+++.++++..++++|-....|+.+|.+..+.++++.|
T Consensus 472 ~yEkawElsn~~s-------------arA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~a 538 (777)
T KOG1128|consen 472 LYEKAWELSNYIS-------------ARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAA 538 (777)
T ss_pred HHHHHHHHhhhhh-------------HHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHH
Confidence 5566555554432 234445556666688999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 003891 187 IVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAAN 265 (788)
Q Consensus 187 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~ 265 (788)
.+.|..++..+|++.++|+|++..|.+.++..+|...++++++-+-++..+|-|.-.+..+.|.+++|++.|.+.+.+.
T Consensus 539 v~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~~ 617 (777)
T KOG1128|consen 539 VKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLR 617 (777)
T ss_pred HHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999999998899999999999999999999999999998874
No 147
>TIGR02470 sucr_synth sucrose synthase. This model represents sucrose synthase, an enzyme that, despite its name, generally uses rather produces sucrose. Sucrose plus UDP (or ADP) becomes D-fructose plus UDP-glucose (or ADP-glucose), which is then available for cell wall (or starch) biosynthesis. The enzyme is homologous to sucrose phosphate synthase, which catalyzes the penultimate step in sucrose synthesis. Sucrose synthase is found, so far, exclusively in plants and cyanobacteria.
Probab=99.34 E-value=2.4e-11 Score=140.05 Aligned_cols=180 Identities=13% Similarity=0.089 Sum_probs=133.9
Q ss_pred CCCeEEEecCCC--CcCCHHHHHHHHHHHhHcCCcEEEEecCCCC-----CH---HHHHHHHHHHHHcCCCCCcEEEcCC
Q 003891 524 NGFITFGSFNNL--AKITPKVLQVWARILCAVPNSRLVVKCKPFC-----CD---SVRHRFLSTLEQLGLESLRVDLLPL 593 (788)
Q Consensus 524 ~~~~~f~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~-----~~---~~~~~l~~~~~~~gi~~~rv~~~~~ 593 (788)
.+..++++++|+ .|..+.+++++.++....++++|+|+|++.. +. ....++.+.+++.|+. ++|.|+|.
T Consensus 548 ~~kpiIl~VGRL~~~KGid~LIeA~~~l~~l~~~~~LVIVGGg~~~~~s~d~ee~~~i~~L~~la~~~gL~-g~V~flG~ 626 (784)
T TIGR02470 548 PNKPIIFSMARLDRVKNLTGLVECYGRSPKLRELVNLVVVAGKLDAKESKDREEQAEIEKMHNLIDQYQLH-GQIRWIGA 626 (784)
T ss_pred CCCcEEEEEeCCCccCCHHHHHHHHHHhHhhCCCeEEEEEeCCcccccccchhHHHHHHHHHHHHHHhCCC-CeEEEccC
Confidence 344567888877 8999999999988765567899999987632 11 2446788889999998 99999997
Q ss_pred cCCcHH---HHHhc-ccccEeecCCCC-CCchhHHHHhhhCCceeecCCCccCccchhHHHh--hhCCccccc--CCHHH
Q 003891 594 ILLNHD---HMQAY-SLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLT--KVGLKHLIA--KNEDE 664 (788)
Q Consensus 594 ~~~~~~---~~~~~-~~~Dv~Ld~~~~-~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l~--~~gl~~~ia--~~~~~ 664 (788)
..+..+ ....+ ..+|||+-|+.| +.|.|.+|||+||+|||+ +++|+ +-. .-|..+++. .|+++
T Consensus 627 ~~~~~~~~elyr~iAd~adVfV~PS~~EpFGLvvLEAMAcGlPVVA-------T~~GG-~~EiV~dg~tGfLVdp~D~ea 698 (784)
T TIGR02470 627 QLNRVRNGELYRYIADTKGIFVQPALYEAFGLTVLEAMTCGLPTFA-------TRFGG-PLEIIQDGVSGFHIDPYHGEE 698 (784)
T ss_pred cCCcccHHHHHHHhhccCcEEEECCcccCCCHHHHHHHHcCCCEEE-------cCCCC-HHHHhcCCCcEEEeCCCCHHH
Confidence 532333 33322 246899999977 779999999999999997 66662 111 113344443 47888
Q ss_pred HHHHHHHHh----cCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHH--HHHH
Q 003891 665 YVQLALQLA----SDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYR--NMWH 714 (788)
Q Consensus 665 y~~~a~~l~----~d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~--~~~~ 714 (788)
+.+...++. +|++.+++++++.++++.+. |+++.+++++.+... ..|.
T Consensus 699 LA~aL~~ll~kll~dp~~~~~ms~~a~~rV~~~--FSW~~~A~~ll~l~~~~~~~~ 752 (784)
T TIGR02470 699 AAEKIVDFFEKCDEDPSYWQKISQGGLQRIYEK--YTWKIYSERLLTLAGIYGFWK 752 (784)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh--CCHHHHHHHHHHHHhhhhHhh
Confidence 888887764 79999999999998877544 899999999998874 4574
No 148
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.33 E-value=2e-11 Score=133.19 Aligned_cols=165 Identities=18% Similarity=0.137 Sum_probs=128.6
Q ss_pred CCCeEEEecCCC--CcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHHH
Q 003891 524 NGFITFGSFNNL--AKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHM 601 (788)
Q Consensus 524 ~~~~~f~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~~~~l~~~~~~~gi~~~rv~~~~~~~~~~~~~ 601 (788)
.+.++|+.+++. .|..+.+++++.++... |+.+|++.|.+ +....++ +.. ++|.|.|.++ .++..
T Consensus 195 ~~~~~i~~~G~~~~~k~~~~~i~~~~~l~~~-~~~~l~i~G~~----~~~~~~~------~~~-~~v~~~g~~~-~~~~~ 261 (364)
T cd03814 195 PDRPVLLYVGRLAPEKNLEALLDADLPLRRR-PPVRLVIVGDG----PARARLE------ARY-PNVHFLGFLD-GEELA 261 (364)
T ss_pred CCCeEEEEEeccccccCHHHHHHHHHHhhhc-CCceEEEEeCC----chHHHHh------ccC-CcEEEEeccC-HHHHH
Confidence 445667777765 78999999999999888 99999999976 2333332 333 7899999876 68888
Q ss_pred HhcccccEeecCCCC-CCchhHHHHhhhCCceeecCCCccCccchhHHHhhhCCccccc--CCHHHHHHHHHHHhcCHHH
Q 003891 602 QAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIA--KNEDEYVQLALQLASDVTA 678 (788)
Q Consensus 602 ~~~~~~Dv~Ld~~~~-~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l~~~gl~~~ia--~~~~~y~~~a~~l~~d~~~ 678 (788)
..|+.+|++|.|+.. +.|+|.+|||++|+|||+.....+...+ .. +-.+++. .+.+++++...++..|++.
T Consensus 262 ~~~~~~d~~l~~s~~e~~~~~~lEa~a~g~PvI~~~~~~~~~~i-----~~-~~~g~~~~~~~~~~l~~~i~~l~~~~~~ 335 (364)
T cd03814 262 AAYASADVFVFPSRTETFGLVVLEAMASGLPVVAPDAGGPADIV-----TD-GENGLLVEPGDAEAFAAALAALLADPEL 335 (364)
T ss_pred HHHHhCCEEEECcccccCCcHHHHHHHcCCCEEEcCCCCchhhh-----cC-CcceEEcCCCCHHHHHHHHHHHHcCHHH
Confidence 999999999999866 6699999999999999996655433322 11 2233443 5677799999999999999
Q ss_pred HHHHHHHHHHHhhcCCCCChHHHHHHHHHHHH
Q 003891 679 LANLRMSLRDLMSKSPVCDGQNFALGLESTYR 710 (788)
Q Consensus 679 ~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~ 710 (788)
+.++.++.++.. ..|+++.+++.+++.|+
T Consensus 336 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~ 364 (364)
T cd03814 336 RRRMAARARAEA---ERRSWEAFLDNLLEAYR 364 (364)
T ss_pred HHHHHHHHHHHH---hhcCHHHHHHHHHHhhC
Confidence 999999988775 33899999999998873
No 149
>TIGR02468 sucrsPsyn_pln sucrose phosphate synthase/possible sucrose phosphate phosphatase, plant. Members of this family are sucrose-phosphate synthases of plants. This enzyme is known to exist in multigene families in several species of both monocots and dicots. The N-terminal domain is the glucosyltransferase domain. Members of this family also have a variable linker region and a C-terminal domain that resembles sucrose phosphate phosphatase (SPP) (EC 3.1.3.24) (see TIGR01485), the next and final enzyme of sucrose biosynthesis. The SPP-like domain likely serves a binding and not a catalytic function, as the reported SPP is always encoded by a distinct protein.
Probab=99.33 E-value=2.4e-11 Score=142.76 Aligned_cols=181 Identities=14% Similarity=0.060 Sum_probs=139.3
Q ss_pred CCCCeEEEecCCC--CcCCHHHHHHHHHHHhH--cCCcEEEEecCCCC-------CHHHHHHHHHHHHHcCCCCCcEEEc
Q 003891 523 TNGFITFGSFNNL--AKITPKVLQVWARILCA--VPNSRLVVKCKPFC-------CDSVRHRFLSTLEQLGLESLRVDLL 591 (788)
Q Consensus 523 ~~~~~~f~~~~~~--~K~~~~~~~~~~~il~~--~p~~~l~l~~~~~~-------~~~~~~~l~~~~~~~gi~~~rv~~~ 591 (788)
..+.+++.+++|+ .|....+++++.++... .|+.++ ++|.+-. ..+....+.+.+.+.|+. ++|.|.
T Consensus 476 ~pdkpvIL~VGRL~p~KGi~~LIeAf~~L~~l~~~~nL~L-IiG~gdd~d~l~~~~~~~l~~L~~li~~lgL~-g~V~Fl 553 (1050)
T TIGR02468 476 NPRKPMILALARPDPKKNITTLVKAFGECRPLRELANLTL-IMGNRDDIDEMSSGSSSVLTSVLKLIDKYDLY-GQVAYP 553 (1050)
T ss_pred cCCCcEEEEEcCCccccCHHHHHHHHHHhHhhccCCCEEE-EEecCchhhhhhccchHHHHHHHHHHHHhCCC-CeEEec
Confidence 3445567888877 89999999999988653 345553 4454311 113456788889999998 999999
Q ss_pred CCcCCcHHHHHhcccc----cEeecCCCC-CCchhHHHHhhhCCceeecCCCccCccchhH-HHhhhCCccccc--CCHH
Q 003891 592 PLILLNHDHMQAYSLM----DISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGVS-LLTKVGLKHLIA--KNED 663 (788)
Q Consensus 592 ~~~~~~~~~~~~~~~~----Dv~Ld~~~~-~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~-~l~~~gl~~~ia--~~~~ 663 (788)
|.++ ..+...+|+.| |||+-|+-+ +.|.|.+|||+||+|||+ +++|+. =+..-|..++++ .|.+
T Consensus 554 G~v~-~edvp~lYr~Ad~s~DVFV~PS~~EgFGLvlLEAMAcGlPVVA-------SdvGG~~EII~~g~nGlLVdP~D~e 625 (1050)
T TIGR02468 554 KHHK-QSDVPDIYRLAAKTKGVFINPAFIEPFGLTLIEAAAHGLPMVA-------TKNGGPVDIHRVLDNGLLVDPHDQQ 625 (1050)
T ss_pred CCCC-HHHHHHHHHHhhhcCCeeeCCcccCCCCHHHHHHHHhCCCEEE-------eCCCCcHHHhccCCcEEEECCCCHH
Confidence 9987 67888888877 699999977 779999999999999998 555520 011124444443 4899
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHHH
Q 003891 664 EYVQLALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRNMWHRY 716 (788)
Q Consensus 664 ~y~~~a~~l~~d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~ 716 (788)
++.+...++.+|++.+++|+++.++++. .|+++..++.+.+.|..+-.|+
T Consensus 626 aLA~AL~~LL~Dpelr~~m~~~gr~~v~---~FSWe~ia~~yl~~i~~~~~~~ 675 (1050)
T TIGR02468 626 AIADALLKLVADKQLWAECRQNGLKNIH---LFSWPEHCKTYLSRIASCRPRH 675 (1050)
T ss_pred HHHHHHHHHhhCHHHHHHHHHHHHHHHH---HCCHHHHHHHHHHHHHHHhccC
Confidence 9999999999999999999999988864 3999999999999998876544
No 150
>PLN00142 sucrose synthase
Probab=99.33 E-value=2.8e-11 Score=139.50 Aligned_cols=179 Identities=13% Similarity=0.041 Sum_probs=133.8
Q ss_pred CCeEEEecCCC--CcCCHHHHHHHHHHHhHcCCcEEEEecCCCCC-----HH---HHHHHHHHHHHcCCCCCcEEEcCCc
Q 003891 525 GFITFGSFNNL--AKITPKVLQVWARILCAVPNSRLVVKCKPFCC-----DS---VRHRFLSTLEQLGLESLRVDLLPLI 594 (788)
Q Consensus 525 ~~~~f~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~-----~~---~~~~l~~~~~~~gi~~~rv~~~~~~ 594 (788)
+..++++++|+ .|..+.++++++++.+..|+++|+|+|++... .+ ...++.+.+++.|+. ++|.|+|..
T Consensus 572 ~kpvIl~VGRL~~~KGid~LIeA~a~l~~l~~~~~LVIVGgg~d~~~s~d~ee~~el~~L~~La~~lgL~-~~V~flG~~ 650 (815)
T PLN00142 572 KKPIIFSMARLDRVKNLTGLVEWYGKNKRLRELVNLVVVGGFIDPSKSKDREEIAEIKKMHSLIEKYNLK-GQFRWIAAQ 650 (815)
T ss_pred CCcEEEEEecCcccCCHHHHHHHHHHHHHhCCCcEEEEEECCccccccccHHHHHHHHHHHHHHHHcCCC-CcEEEcCCc
Confidence 34467888877 89999999999998777789999999876211 11 235678888999998 999999864
Q ss_pred CC---cHHHHHhcc-cccEeecCCCC-CCchhHHHHhhhCCceeecCCCccCccchhH-HHhhhCCccccc--CCHHHHH
Q 003891 595 LL---NHDHMQAYS-LMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGVS-LLTKVGLKHLIA--KNEDEYV 666 (788)
Q Consensus 595 ~~---~~~~~~~~~-~~Dv~Ld~~~~-~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~-~l~~~gl~~~ia--~~~~~y~ 666 (788)
.+ ..+...++. .+|||+-|+.| +.|.|.+|||+||+|||+ +++|+- -+..-|..+++. .|.+++.
T Consensus 651 ~~~~~~~eLyr~iadaaDVfVlPS~~EgFGLvvLEAMA~GlPVVA-------TdvGG~~EIV~dG~tG~LV~P~D~eaLA 723 (815)
T PLN00142 651 TNRVRNGELYRYIADTKGAFVQPALYEAFGLTVVEAMTCGLPTFA-------TCQGGPAEIIVDGVSGFHIDPYHGDEAA 723 (815)
T ss_pred CCcccHHHHHHHHHhhCCEEEeCCcccCCCHHHHHHHHcCCCEEE-------cCCCCHHHHhcCCCcEEEeCCCCHHHHH
Confidence 32 245555554 57999999887 679999999999999997 556521 011124455543 4788888
Q ss_pred HHHHH----HhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHH--HHH
Q 003891 667 QLALQ----LASDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYR--NMW 713 (788)
Q Consensus 667 ~~a~~----l~~d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~--~~~ 713 (788)
+...+ +.+|++.+.+|+++.++++.+. |+++.+++++++.-. ..|
T Consensus 724 ~aI~~lLekLl~Dp~lr~~mg~~Ar~rv~e~--FSWe~~A~rll~L~~~~~~~ 774 (815)
T PLN00142 724 NKIADFFEKCKEDPSYWNKISDAGLQRIYEC--YTWKIYAERLLTLGGVYGFW 774 (815)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh--CCHHHHHHHHHHHHhhcchh
Confidence 77665 4589999999999998887544 899999999998764 356
No 151
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.32 E-value=3.4e-10 Score=130.85 Aligned_cols=148 Identities=13% Similarity=0.015 Sum_probs=113.2
Q ss_pred HHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHhC
Q 003891 84 AALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYN 163 (788)
Q Consensus 84 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~ 163 (788)
.....|.+.+++.+||.+....|.+++|...++.++++.|++..+..+++.++..+ +++++|+..+++++..+
T Consensus 78 ~~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~-------~~~eeA~~~~~~~l~~~ 150 (694)
T PRK15179 78 YVRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQ-------QGIEAGRAEIELYFSGG 150 (694)
T ss_pred HHHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHh-------ccHHHHHHHHHHHhhcC
Confidence 34456677777777777777777777777777777777777777777777777664 47777777777777778
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHH
Q 003891 164 WHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSL 238 (788)
Q Consensus 164 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~ 238 (788)
|++..+++.+|.++...|++++|+.+|++++..+|++..++..+|.++...|+.++|...|+++++...+-...+
T Consensus 151 p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~ 225 (694)
T PRK15179 151 SSSAREILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKL 225 (694)
T ss_pred CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHH
Confidence 888888888888888888888888888888887777788888888888888888888888888887765544443
No 152
>KOG1111 consensus N-acetylglucosaminyltransferase complex, subunit PIG-A/SPT14, required for phosphatidylinositol biosynthesis/Sulfolipid synthase [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Lipid transport and metabolism]
Probab=99.32 E-value=3.3e-11 Score=121.88 Aligned_cols=211 Identities=20% Similarity=0.233 Sum_probs=152.6
Q ss_pred CCCccEEEecCCCCCcCc---cCCCccceEEcCCCcc--ccCCCCCCCCCCCCCCCCCCCeEEEecCCC--CcCCHHHHH
Q 003891 472 LPTIDYRITDSLADPPET---KQKHVEELIRLPECFL--CYTPSPEAGPVCPTPALTNGFITFGSFNNL--AKITPKVLQ 544 (788)
Q Consensus 472 ~~~~Dy~i~d~~~~p~~~---~~~~~e~l~~lp~~~~--~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~--~K~~~~~~~ 544 (788)
|..+|-.|.=....-++. ...-.+++..+|+.-. .|.|.+.. ...++.++....+|+ .|..+-.++
T Consensus 143 L~~id~~IcVshtskentvlr~~L~p~kvsvIPnAv~~~~f~P~~~~-------~~S~~i~~ivv~sRLvyrKGiDll~~ 215 (426)
T KOG1111|consen 143 LANIDRIICVSHTSKENTVLRGALAPAKVSVIPNAVVTHTFTPDAAD-------KPSADIITIVVASRLVYRKGIDLLLE 215 (426)
T ss_pred ecCCCcEEEEeecCCCceEEEeccCHhHeeeccceeeccccccCccc-------cCCCCeeEEEEEeeeeeccchHHHHH
Confidence 345666654444444443 2334577888887422 24452221 112333666666777 899999999
Q ss_pred HHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHHHHhcccccEeecCCCC-CCchhHH
Q 003891 545 VWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPY-AGTTTTC 623 (788)
Q Consensus 545 ~~~~il~~~p~~~l~l~~~~~~~~~~~~~l~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~~Dv~Ld~~~~-~g~~t~~ 623 (788)
+-.++.+..|+.++++.|+| |-+..+++.++++-+. +||.++|.++ .++....|..-||||.|+-. ..|++.+
T Consensus 216 iIp~vc~~~p~vrfii~GDG----Pk~i~lee~lEk~~l~-~rV~~lG~v~-h~~Vr~vl~~G~IFlntSlTEafc~~iv 289 (426)
T KOG1111|consen 216 IIPSVCDKHPEVRFIIIGDG----PKRIDLEEMLEKLFLQ-DRVVMLGTVP-HDRVRDVLVRGDIFLNTSLTEAFCMVIV 289 (426)
T ss_pred HHHHHHhcCCCeeEEEecCC----cccchHHHHHHHhhcc-CceEEecccc-hHHHHHHHhcCcEEeccHHHHHHHHHHH
Confidence 99999999999999999998 7888888999999998 9999999998 78999999999999999966 8899999
Q ss_pred HHhhhCCceeecCCCccCccchhHHHhhhCCcccccCC--------HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCCC
Q 003891 624 ESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIAKN--------EDEYVQLALQLASDVTALANLRMSLRDLMSKSPV 695 (788)
Q Consensus 624 eal~~GvPvvt~~g~~~~~r~~~~~l~~~gl~~~ia~~--------~~~y~~~a~~l~~d~~~~~~~r~~~~~~~~~~~~ 695 (788)
||+.||+|||+ .|+| |+||.+..| +++.++....-.+..... -....+++ +..
T Consensus 290 EAaScGL~VVs-------TrVG-------GIpeVLP~d~i~~~~~~~~dl~~~v~~ai~~~~~~---p~~~h~~v--~~~ 350 (426)
T KOG1111|consen 290 EAASCGLPVVS-------TRVG-------GIPEVLPEDMITLGEPGPDDLVGAVEKAITKLRTL---PLEFHDRV--KKM 350 (426)
T ss_pred HHHhCCCEEEE-------eecC-------CccccCCccceeccCCChHHHHHHHHHHHHHhccC---chhHHHHH--HHh
Confidence 99999999997 9999 999877554 455544433332222111 11122333 356
Q ss_pred CChHHHHHHHHHHHHHHHH
Q 003891 696 CDGQNFALGLESTYRNMWH 714 (788)
Q Consensus 696 ~~~~~~~~~~e~~~~~~~~ 714 (788)
++++..++.-|..|.++-.
T Consensus 351 y~w~dVa~rTekvy~r~~~ 369 (426)
T KOG1111|consen 351 YSWKDVAERTEKVYDRAAT 369 (426)
T ss_pred ccHHHHHHHHHHHHHHHhh
Confidence 8999999999999987644
No 153
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.32 E-value=2.4e-11 Score=120.95 Aligned_cols=119 Identities=34% Similarity=0.514 Sum_probs=109.9
Q ss_pred HHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 003891 20 AECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMG 99 (788)
Q Consensus 20 ~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~la 99 (788)
...+|+-+...|.-+.+.++|.+|+..|.+||+++|+++..|.+.+.+|.++|.|+.|++.++.++.++|.+..+|..||
T Consensus 77 ~~~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG 156 (304)
T KOG0553|consen 77 DKALAESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLG 156 (304)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHH
Confidence 45678888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH
Q 003891 100 VIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTD 138 (788)
Q Consensus 100 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~ 138 (788)
.+|..+|++++|++.|+++++++|++...+.++..+-..
T Consensus 157 ~A~~~~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~ 195 (304)
T KOG0553|consen 157 LAYLALGKYEEAIEAYKKALELDPDNESYKSNLKIAEQK 195 (304)
T ss_pred HHHHccCcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHH
Confidence 999999999999999999999999998666555444333
No 154
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.32 E-value=6.1e-09 Score=107.43 Aligned_cols=257 Identities=13% Similarity=-0.006 Sum_probs=189.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHh
Q 003891 60 AYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDL 139 (788)
Q Consensus 60 ~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~l 139 (788)
...+-|..-+..|+|.+|++...+.-+..+.-..++..-+....++|+++.|-.++.++-+..++... ..+...
T Consensus 86 ~~~~egl~~l~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l------~v~ltr 159 (400)
T COG3071 86 KALNEGLLKLFEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTL------AVELTR 159 (400)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchH------HHHHHH
Confidence 34455667778899999999999988888887788888899999999999999999999998665442 233445
Q ss_pred hhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC---CHHHHHHHHHH--HHHc
Q 003891 140 GTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPH---CAEACNNLGVI--YKDR 214 (788)
Q Consensus 140 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~la~~--~~~~ 214 (788)
+.+...++++..|..-..++++..|.++.+......+|...|++.+...++.+.-+..-- ...-+-+.+.. +.+.
T Consensus 160 arlll~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~ 239 (400)
T COG3071 160 ARLLLNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQA 239 (400)
T ss_pred HHHHHhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHH
Confidence 556666899999999999999999999999999999999999999999999887765322 22222222211 1222
Q ss_pred CCHHHHH---HHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 003891 215 DNLDKAV---ECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDA 291 (788)
Q Consensus 215 g~~~eA~---~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~~eA~~~ 291 (788)
.+-+.+. .+++..-..-.+++.....++.-+...|+.++|.++.+.+++..-+.. ....++ ...-++.+.=++.
T Consensus 240 ~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~-L~~~~~--~l~~~d~~~l~k~ 316 (400)
T COG3071 240 RDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR-LCRLIP--RLRPGDPEPLIKA 316 (400)
T ss_pred hccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh-HHHHHh--hcCCCCchHHHHH
Confidence 2222222 244433333446688888999999999999999999999998865432 222222 2356788888999
Q ss_pred HHHHHhhCCCChhhHHhHHHHhhhccCCCchHHHHH
Q 003891 292 YEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEA 327 (788)
Q Consensus 292 ~~~al~l~p~~~~a~~~~lla~~~l~~g~~~~~~~~ 327 (788)
.++.++..|+++.... .++..++..+...++-+.
T Consensus 317 ~e~~l~~h~~~p~L~~--tLG~L~~k~~~w~kA~~~ 350 (400)
T COG3071 317 AEKWLKQHPEDPLLLS--TLGRLALKNKLWGKASEA 350 (400)
T ss_pred HHHHHHhCCCChhHHH--HHHHHHHHhhHHHHHHHH
Confidence 9999999999996544 467777776665555443
No 155
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.31 E-value=1.3e-09 Score=121.76 Aligned_cols=263 Identities=17% Similarity=0.145 Sum_probs=190.2
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Q 003891 57 YAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIAL 136 (788)
Q Consensus 57 ~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l 136 (788)
+.+.+.....++...|++++|++++++....-.+....+-..|.++.++|++++|...|...++.+|++...+..+..++
T Consensus 3 ~SE~lLY~~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~ 82 (517)
T PF12569_consen 3 HSELLLYKNSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEAL 82 (517)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHH
Confidence 45677888899999999999999999988888888899999999999999999999999999999999987776666554
Q ss_pred HHhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHH-HHHHHHHHHhcCCCCHHHHHHHHHHHHHcC
Q 003891 137 TDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDM-AIVFYELAFHFNPHCAEACNNLGVIYKDRD 215 (788)
Q Consensus 137 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~-A~~~~~~al~~~p~~~~~~~~la~~~~~~g 215 (788)
.... -....+.+.-...|++.....|....... +...+..-.++.. +..++...+. ..-+....++-.+|....
T Consensus 83 g~~~--~~~~~~~~~~~~~y~~l~~~yp~s~~~~r-l~L~~~~g~~F~~~~~~yl~~~l~--KgvPslF~~lk~Ly~d~~ 157 (517)
T PF12569_consen 83 GLQL--QLSDEDVEKLLELYDELAEKYPRSDAPRR-LPLDFLEGDEFKERLDEYLRPQLR--KGVPSLFSNLKPLYKDPE 157 (517)
T ss_pred hhhc--ccccccHHHHHHHHHHHHHhCccccchhH-hhcccCCHHHHHHHHHHHHHHHHh--cCCchHHHHHHHHHcChh
Confidence 2221 11223567788888888888876433221 1111222223333 3333444443 344566666666666444
Q ss_pred CHHHHHHHHHHHHhh---------------CCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 003891 216 NLDKAVECYQMALSI---------------KPNF--SQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVL 278 (788)
Q Consensus 216 ~~~eA~~~~~~al~~---------------~p~~--~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~ 278 (788)
+..-...++...... .|.. ..+++.++..|...|++++|+++++++++..|..++.+...|.+
T Consensus 158 K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~Kari 237 (517)
T PF12569_consen 158 KAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARI 237 (517)
T ss_pred HHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 433333333332211 1111 23668889999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCChhhHHhHHHHhhhccCCCchHHHH
Q 003891 279 YRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFE 326 (788)
Q Consensus 279 ~~~~g~~~eA~~~~~~al~l~p~~~~a~~~~lla~~~l~~g~~~~~~~ 326 (788)
+...|++.+|.++++.+.++|+.+...... .+..++..|..+++.+
T Consensus 238 lKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK--~aKy~LRa~~~e~A~~ 283 (517)
T PF12569_consen 238 LKHAGDLKEAAEAMDEARELDLADRYINSK--CAKYLLRAGRIEEAEK 283 (517)
T ss_pred HHHCCCHHHHHHHHHHHHhCChhhHHHHHH--HHHHHHHCCCHHHHHH
Confidence 999999999999999999999988765443 4455566666555443
No 156
>PLN02501 digalactosyldiacylglycerol synthase
Probab=99.31 E-value=2.6e-11 Score=134.93 Aligned_cols=259 Identities=11% Similarity=0.001 Sum_probs=159.9
Q ss_pred CHHHHHHHHHhCCCcEEEe-CCCCCCCCccc-ccccCCCCeEEec----ccCCCCCCCCCccE--------E----EecC
Q 003891 421 DEKKVAAMVREDKIDILVE-LTGHTANNKLG-MMACQPAPVQVTW----IGYPNTTGLPTIDY--------R----ITDS 482 (788)
Q Consensus 421 ~~~~~a~~i~~d~idilvd-l~g~t~~~~~~-~~a~r~Apvq~~~----~g~~~ttg~~~~Dy--------~----i~d~ 482 (788)
+...+.+.|.+.++||++= .-+|-.....+ ..|.|.-||-.++ ..|....|++.+-. + -+|.
T Consensus 422 p~gdI~~~L~~f~PDVVHLatP~~LGw~~~Glr~ArKl~PVVasyHTny~eYl~~y~~g~L~~~llk~l~~~v~r~hcD~ 501 (794)
T PLN02501 422 PAGDTSQFIPSKDADIAILEEPEHLNWYHHGKRWTDKFNHVVGVVHTNYLEYIKREKNGALQAFFVKHINNWVTRAYCHK 501 (794)
T ss_pred chHHHHHHhhccCCCEEEECCchhhccHHHHHHHHHHcCCeEEEEeCCcHHHHhHhcchhHHHHHHHHHHHHHHHhhCCE
Confidence 4578999999999999962 11222211111 1244444654333 22222223222111 1 1455
Q ss_pred CCCCcCccCCCccceEEcCCCccc---cCCCCCCCCCCCCCCCCC--CCeEEEecCCC--CcCCHHHHHHHHHHHhHcCC
Q 003891 483 LADPPETKQKHVEELIRLPECFLC---YTPSPEAGPVCPTPALTN--GFITFGSFNNL--AKITPKVLQVWARILCAVPN 555 (788)
Q Consensus 483 ~~~p~~~~~~~~e~l~~lp~~~~~---~~~~~~~~~~~~~~~~~~--~~~~f~~~~~~--~K~~~~~~~~~~~il~~~p~ 555 (788)
++.|.+....+....+.-.+ ++. |.|....... ...+++. ..+.| ++|+ .|....++++|..+....|+
T Consensus 502 VIaPS~atq~L~~~vI~nVn-GVDte~F~P~~r~~~~-r~lgi~~~~kgiLf--VGRLa~EKGld~LLeAla~L~~~~pn 577 (794)
T PLN02501 502 VLRLSAATQDLPKSVICNVH-GVNPKFLKIGEKVAEE-RELGQQAFSKGAYF--LGKMVWAKGYRELIDLLAKHKNELDG 577 (794)
T ss_pred EEcCCHHHHHhcccceeecc-cccccccCCcchhHHH-HhcCCccccCceEE--EEcccccCCHHHHHHHHHHHHhhCCC
Confidence 66665554433333333222 221 3332211100 1122221 11333 4455 99999999999999998999
Q ss_pred cEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHHHHhcccccEeecCCCC-CCchhHHHHhhhCCceee
Q 003891 556 SRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVT 634 (788)
Q Consensus 556 ~~l~l~~~~~~~~~~~~~l~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~~Dv~Ld~~~~-~g~~t~~eal~~GvPvvt 634 (788)
.+|+|+|.| +.++.+++.+.++|+. |.|+|.... ....|+.+|||+-|+.+ +.|++++|||+||+|||+
T Consensus 578 vrLvIVGDG----P~reeLe~la~eLgL~---V~FLG~~dd---~~~lyasaDVFVlPS~sEgFGlVlLEAMA~GlPVVA 647 (794)
T PLN02501 578 FNLDVFGNG----EDAHEVQRAAKRLDLN---LNFLKGRDH---ADDSLHGYKVFINPSISDVLCTATAEALAMGKFVVC 647 (794)
T ss_pred eEEEEEcCC----ccHHHHHHHHHHcCCE---EEecCCCCC---HHHHHHhCCEEEECCCcccchHHHHHHHHcCCCEEE
Confidence 999999988 7788899888888883 889988542 23567789999999988 679999999999999998
Q ss_pred cCCCccCccchhHHHhhhCCcccccCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHH
Q 003891 635 MAGSVHAHNVGVSLLTKVGLKHLIAKNEDEYVQLALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALGLEST 708 (788)
Q Consensus 635 ~~g~~~~~r~~~~~l~~~gl~~~ia~~~~~y~~~a~~l~~d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~ 708 (788)
....... ++. -|-..++..|.+++++.+.++..|+..+..+++ ..-++++.++++|++.
T Consensus 648 Td~pG~e------~V~-~g~nGll~~D~EafAeAI~~LLsd~~~rl~~~a--------~~~~SWeAaadrLle~ 706 (794)
T PLN02501 648 ADHPSNE------FFR-SFPNCLTYKTSEDFVAKVKEALANEPQPLTPEQ--------RYNLSWEAATQRFMEY 706 (794)
T ss_pred ecCCCCc------eEe-ecCCeEecCCHHHHHHHHHHHHhCchhhhHHHH--------HhhCCHHHHHHHHHHh
Confidence 5432110 111 134445668999999999999998875433322 1147888888888764
No 157
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.31 E-value=1.8e-09 Score=133.10 Aligned_cols=280 Identities=13% Similarity=0.008 Sum_probs=210.7
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------C
Q 003891 23 LAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHY-----APAYYNLGVVYSELMQYDTALGCYEKAALERPM------Y 91 (788)
Q Consensus 23 la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~------~ 91 (788)
.+.+...+|..+...|++++|...++++++..+.. ..+...+|.++...|++++|...+++++..... .
T Consensus 451 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~ 530 (903)
T PRK04841 451 QAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYA 530 (903)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHH
Confidence 34455567888999999999999999999864442 235678899999999999999999999875332 1
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHH-HHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHhCCC-----
Q 003891 92 AEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEI-AKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWH----- 165 (788)
Q Consensus 92 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~-~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~----- 165 (788)
..++..+|.++...|++++|...++++++....... .......++..++.++...|++++|...+++++.....
T Consensus 531 ~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~ 610 (903)
T PRK04841 531 LWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQ 610 (903)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchH
Confidence 346778899999999999999999999987433210 00111233455677888889999999999999876332
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC---HHHH----HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH---
Q 003891 166 YADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHC---AEAC----NNLGVIYKDRDNLDKAVECYQMALSIKPNFS--- 235 (788)
Q Consensus 166 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~----~~la~~~~~~g~~~eA~~~~~~al~~~p~~~--- 235 (788)
....+..++.++...|++++|...+.++....... .... ......+...|+.++|..++.......+...
T Consensus 611 ~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~ 690 (903)
T PRK04841 611 QLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFL 690 (903)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhH
Confidence 23456678999999999999999999997753321 1111 1122445568999999999877665332222
Q ss_pred -HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 003891 236 -QSLNNLGVVYTVQGKMDAAAEMIEKAIAANP------TYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDS 302 (788)
Q Consensus 236 -~~~~~la~~~~~~g~~~eA~~~l~kal~~~p------~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~ 302 (788)
..+..++.++...|++++|...+++++.... ....++..+|.++...|+.++|...+.+++++....
T Consensus 691 ~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~~~ 764 (903)
T PRK04841 691 QGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLANRT 764 (903)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCcc
Confidence 1256789999999999999999999988632 224578889999999999999999999999987553
No 158
>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue.
Probab=99.30 E-value=2.2e-10 Score=123.78 Aligned_cols=311 Identities=12% Similarity=-0.020 Sum_probs=173.5
Q ss_pred eEeeccCCc------ccChhHHhhhhhhcccCCCceEEEEEeccccCChhhHHHHHHHhhhCCeEEEccC------CCHH
Q 003891 356 VIGYVSPDY------FTHSVSYFIEAPLVYHDYQNYKVVVYSAVVKADAKTIRFREKVMKKGGIWRDIYG------IDEK 423 (788)
Q Consensus 356 riGyvS~df------~~H~v~~~~~~~l~~~dr~~fev~~Y~~~~~~D~~t~~~r~~~~~~~~~~~~~~~------~~~~ 423 (788)
+|.+++..+ ....+..++..+...+.+.+.+|++++........ ....... ...+..... ....
T Consensus 2 kI~~i~~~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~V~v~~~~~~~~~~--~~~~~~~--~~~~~~~~~~~~~~~~~~~ 77 (335)
T cd03802 2 RIALVAPPREPVPPPAYGGTERVVAALTEGLVARGHEVTLFASGDSKTAA--PLVPVVP--EPLRLDAPGRDRAEAEALA 77 (335)
T ss_pred eEEEEcCCcccCCCcccCcHHHHHHHHHHHHHhcCceEEEEecCCCCccc--ceeeccC--CCcccccchhhHhhHHHHH
Confidence 566666555 22334455666777777778999998765432111 1111100 011111000 0124
Q ss_pred HHHHHHHhCCCcEEEeCCCCCCCCcccccccCCCCeEEecccCCCCCCC------CCccEEEecCCCCCcCccCCCccce
Q 003891 424 KVAAMVREDKIDILVELTGHTANNKLGMMACQPAPVQVTWIGYPNTTGL------PTIDYRITDSLADPPETKQKHVEEL 497 (788)
Q Consensus 424 ~~a~~i~~d~idilvdl~g~t~~~~~~~~a~r~Apvq~~~~g~~~ttg~------~~~Dy~i~d~~~~p~~~~~~~~e~l 497 (788)
.+.+.|...++||+.--+.... ......+-.|+-.+..+.+..... ...|.+++-.-......... .++
T Consensus 78 ~~~~~~~~~~~Divh~~~~~~~---~~~~~~~~~~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~--~~~ 152 (335)
T cd03802 78 LAERALAAGDFDIVHNHSLHLP---LPFARPLPVPVVTTLHGPPDPELLKLYYAARPDVPFVSISDAQRRPWPPL--PWV 152 (335)
T ss_pred HHHHHHhcCCCCEEEecCcccc---hhhhcccCCCEEEEecCCCCcccchHHHhhCcCCeEEEecHHHHhhcccc--ccc
Confidence 5677888899999963222221 112223445666666555432211 12233332211111001111 455
Q ss_pred EEcCCCccccCCCCCCCCCCCCCCCCCCCeEEEecCC--CCcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHH
Q 003891 498 IRLPECFLCYTPSPEAGPVCPTPALTNGFITFGSFNN--LAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFL 575 (788)
Q Consensus 498 ~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~--~~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~~~~l~ 575 (788)
..+|+.. . +..-. + .+.+..+++.+++ ..|..+.++++.. .++.+|+++|.+. ....+.
T Consensus 153 ~vi~ngv-d--~~~~~-~------~~~~~~~i~~~Gr~~~~Kg~~~li~~~~-----~~~~~l~i~G~~~----~~~~~~ 213 (335)
T cd03802 153 ATVHNGI-D--LDDYP-F------RGPKGDYLLFLGRISPEKGPHLAIRAAR-----RAGIPLKLAGPVS----DPDYFY 213 (335)
T ss_pred EEecCCc-C--hhhCC-C------CCCCCCEEEEEEeeccccCHHHHHHHHH-----hcCCeEEEEeCCC----CHHHHH
Confidence 5566432 1 11000 0 1112223444454 5888888777643 2578999998773 223333
Q ss_pred HHHHHcC-CCCCcEEEcCCcCCcHHHHHhcccccEeecCCC--CCCchhHHHHhhhCCceeecCCCccCccchhHHHhhh
Q 003891 576 STLEQLG-LESLRVDLLPLILLNHDHMQAYSLMDISLDTFP--YAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKV 652 (788)
Q Consensus 576 ~~~~~~g-i~~~rv~~~~~~~~~~~~~~~~~~~Dv~Ld~~~--~~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l~~~ 652 (788)
....+.. +. ++|.|.|.++ ..+....|+.+|+++-|+. .+.|.+++|||++|+|||+-.......-+ .-
T Consensus 214 ~~~~~~~~~~-~~v~~~G~~~-~~~~~~~~~~~d~~v~ps~~~E~~~~~~lEAma~G~PvI~~~~~~~~e~i------~~ 285 (335)
T cd03802 214 REIAPELLDG-PDIEYLGEVG-GAEKAELLGNARALLFPILWEEPFGLVMIEAMACGTPVIAFRRGAVPEVV------ED 285 (335)
T ss_pred HHHHHhcccC-CcEEEeCCCC-HHHHHHHHHhCcEEEeCCcccCCcchHHHHHHhcCCCEEEeCCCCchhhe------eC
Confidence 3334333 44 8999999988 5778889999999999885 46799999999999999985433332222 12
Q ss_pred CCcccccCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHH
Q 003891 653 GLKHLIAKNEDEYVQLALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYR 710 (788)
Q Consensus 653 gl~~~ia~~~~~y~~~a~~l~~d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~ 710 (788)
|..+++..+.+++++....+..+.. +..++... ..|+.+.+++++++.|+
T Consensus 286 ~~~g~l~~~~~~l~~~l~~l~~~~~------~~~~~~~~--~~~s~~~~~~~~~~~y~ 335 (335)
T cd03802 286 GVTGFLVDSVEELAAAVARADRLDR------AACRRRAE--RRFSAARMVDDYLALYR 335 (335)
T ss_pred CCcEEEeCCHHHHHHHHHHHhccHH------HHHHHHHH--HhCCHHHHHHHHHHHhC
Confidence 4456677778999888888765542 22333332 34899999999999884
No 159
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=99.30 E-value=1.4e-11 Score=134.25 Aligned_cols=258 Identities=18% Similarity=0.154 Sum_probs=164.2
Q ss_pred HHHHHHHHhCCCcEEEeCCCCCCCCcccccccCC--CCeEEecccCCCCC-----CCCCccEEEecCCCCCcCcc---CC
Q 003891 423 KKVAAMVREDKIDILVELTGHTANNKLGMMACQP--APVQVTWIGYPNTT-----GLPTIDYRITDSLADPPETK---QK 492 (788)
Q Consensus 423 ~~~a~~i~~d~idilvdl~g~t~~~~~~~~a~r~--Apvq~~~~g~~~tt-----g~~~~Dy~i~d~~~~p~~~~---~~ 492 (788)
..+...++..++||++--+.+.. -...++.+. .|+-..+.|+.... .+...|.+++-.-....... ..
T Consensus 68 ~~l~~~~~~~~~dii~~~~~~~~--~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~vi~~s~~~~~~~~~~~~~ 145 (355)
T cd03819 68 ARLRRLIREEKVDIVHARSRAPA--WSAYLAARRTRPPFVTTVHGFYSVNFRYNAIMARGDRVIAVSNFIADHIRENYGV 145 (355)
T ss_pred HHHHHHHHHcCCCEEEECCCchh--HHHHHHHHhcCCCEEEEeCCchhhHHHHHHHHHhcCEEEEeCHHHHHHHHHhcCC
Confidence 45677889999999975433222 122222222 45555555543222 12345666543211111111 12
Q ss_pred CccceEEcCCCcc--ccCCCCCCCC----CCCCCCCCCCCeEEEecCCC--CcCCHHHHHHHHHHHhHcCCcEEEEecCC
Q 003891 493 HVEELIRLPECFL--CYTPSPEAGP----VCPTPALTNGFITFGSFNNL--AKITPKVLQVWARILCAVPNSRLVVKCKP 564 (788)
Q Consensus 493 ~~e~l~~lp~~~~--~~~~~~~~~~----~~~~~~~~~~~~~f~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~l~~~~ 564 (788)
..+++..+|++.- .|.+...... .+...+++++.++++.++++ .|..+.+++++.++....|+.+|+++|.+
T Consensus 146 ~~~k~~~i~ngi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Gr~~~~Kg~~~li~~~~~l~~~~~~~~l~ivG~~ 225 (355)
T cd03819 146 DPDRIRVIPRGVDLDRFDPGAVPPERILALAREWPLPKGKPVILLPGRLTRWKGQEVFIEALARLKKDDPDVHLLIVGDA 225 (355)
T ss_pred ChhhEEEecCCccccccCccccchHHHHHHHHHcCCCCCceEEEEeeccccccCHHHHHHHHHHHHhcCCCeEEEEEECC
Confidence 2467777876421 0111110000 00111345667778888875 89999999999999888889999999987
Q ss_pred CCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHHHHhcccccEeecCC-CC-CCchhHHHHhhhCCceeecCCCccCc
Q 003891 565 FCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTF-PY-AGTTTTCESLYMGVPCVTMAGSVHAH 642 (788)
Q Consensus 565 ~~~~~~~~~l~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~~Dv~Ld~~-~~-~g~~t~~eal~~GvPvvt~~g~~~~~ 642 (788)
...+.....+.+.+.+.|+. ++|.|.|. .++....|..+|+++-|+ .+ +.|++.+|||++|+|||+........
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~-~~v~~~g~---~~~~~~~l~~ad~~i~ps~~~e~~~~~l~EA~a~G~PvI~~~~~~~~e 301 (355)
T cd03819 226 QGRRFYYAELLELIKRLGLQ-DRVTFVGH---CSDMPAAYALADIVVSASTEPEAFGRTAVEAQAMGRPVIASDHGGARE 301 (355)
T ss_pred cccchHHHHHHHHHHHcCCc-ceEEEcCC---cccHHHHHHhCCEEEecCCCCCCCchHHHHHHhcCCCEEEcCCCCcHH
Confidence 55555667777788888997 89999998 357778888899999998 44 67899999999999999854322211
Q ss_pred cchhHHHhhhCCcccc--cCCHHHHHHHHH-HHhcCHHHHHHHHHHHHHHhhc
Q 003891 643 NVGVSLLTKVGLKHLI--AKNEDEYVQLAL-QLASDVTALANLRMSLRDLMSK 692 (788)
Q Consensus 643 r~~~~~l~~~gl~~~i--a~~~~~y~~~a~-~l~~d~~~~~~~r~~~~~~~~~ 692 (788)
++.. |..+++ ..|++++++... .+..|++.+.+++++.++.+.+
T Consensus 302 -----~i~~-~~~g~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~a~~~~~~ 348 (355)
T cd03819 302 -----TVRP-GETGLLVPPGDAEALAQALDQILSLLPEGRAKMFAKARMCVET 348 (355)
T ss_pred -----HHhC-CCceEEeCCCCHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHH
Confidence 1222 323333 358888888775 4446899999999999887654
No 160
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.30 E-value=6.4e-11 Score=109.83 Aligned_cols=119 Identities=16% Similarity=0.228 Sum_probs=113.9
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 003891 154 AYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPN 233 (788)
Q Consensus 154 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~ 233 (788)
+.+++++..+|++....+.+|..+...|++++|+..+++++..+|.+..++..+|.++...|++++|+.+++++++.+|+
T Consensus 4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~ 83 (135)
T TIGR02552 4 ATLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPD 83 (135)
T ss_pred hhHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 46889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 003891 234 FSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAY 272 (788)
Q Consensus 234 ~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~ 272 (788)
++..++.+|.++...|++++|+..++++++.+|++....
T Consensus 84 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 122 (135)
T TIGR02552 84 DPRPYFHAAECLLALGEPESALKALDLAIEICGENPEYS 122 (135)
T ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHH
Confidence 999999999999999999999999999999999886643
No 161
>PLN02316 synthase/transferase
Probab=99.30 E-value=6e-11 Score=140.00 Aligned_cols=173 Identities=16% Similarity=0.062 Sum_probs=132.4
Q ss_pred CCCC-CCCeEEEecCCC--CcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCC-CCcEEEcCCcC
Q 003891 520 PALT-NGFITFGSFNNL--AKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLE-SLRVDLLPLIL 595 (788)
Q Consensus 520 ~~~~-~~~~~f~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~~~~l~~~~~~~gi~-~~rv~~~~~~~ 595 (788)
.+++ .+.+++|+++|+ .|..+.+++++.++++ ++.+|+|+|.|- .......|++..+++|+. ++||.|.+...
T Consensus 833 lGL~~~d~plVg~VGRL~~qKGvdlLi~Al~~ll~--~~~qlVIvG~Gp-d~~~e~~l~~La~~Lg~~~~~rV~f~g~~d 909 (1036)
T PLN02316 833 LGLKQADLPLVGIITRLTHQKGIHLIKHAIWRTLE--RNGQVVLLGSAP-DPRIQNDFVNLANQLHSSHHDRARLCLTYD 909 (1036)
T ss_pred hCCCcccCeEEEEEeccccccCHHHHHHHHHHHhh--cCcEEEEEeCCC-CHHHHHHHHHHHHHhCccCCCeEEEEecCC
Confidence 4555 367889999988 8999999999999986 579999998762 234577888888999885 58999987643
Q ss_pred CcHHH-HHhcccccEeecCCCC-CCchhHHHHhhhCCceeecCCCccCccchhHHHhhhCCccccc--------------
Q 003891 596 LNHDH-MQAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIA-------------- 659 (788)
Q Consensus 596 ~~~~~-~~~~~~~Dv~Ld~~~~-~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l~~~gl~~~ia-------------- 659 (788)
+.. ..+|..+|+||-|+-| +.|.|.+|||++|+|+|+ +++| |++|.|.
T Consensus 910 --e~lah~iyaaADiflmPS~~EP~GLvqLEAMa~GtppVv-------s~vG-------GL~DtV~d~d~~~~~~~~~g~ 973 (1036)
T PLN02316 910 --EPLSHLIYAGADFILVPSIFEPCGLTQLTAMRYGSIPVV-------RKTG-------GLFDTVFDVDHDKERAQAQGL 973 (1036)
T ss_pred --HHHHHHHHHhCcEEEeCCcccCccHHHHHHHHcCCCeEE-------EcCC-------CcHhhcccccccccccccccc
Confidence 222 2589999999999988 779999999999987775 4555 5554442
Q ss_pred ---------CCHHHHHHHHHHHhcC-HHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHH
Q 003891 660 ---------KNEDEYVQLALQLASD-VTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRNMW 713 (788)
Q Consensus 660 ---------~~~~~y~~~a~~l~~d-~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ 713 (788)
.|++++.....++..+ ++.+..+++..+..|.. -|++.+.+++++++|+++-
T Consensus 974 ~~tGflf~~~d~~aLa~AL~raL~~~~~~~~~~~~~~r~~m~~--dFSW~~~A~~Y~~LY~~a~ 1035 (1036)
T PLN02316 974 EPNGFSFDGADAAGVDYALNRAISAWYDGRDWFNSLCKRVMEQ--DWSWNRPALDYMELYHSAR 1035 (1036)
T ss_pred CCceEEeCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHh--hCCHHHHHHHHHHHHHHHh
Confidence 2677787777777766 34555667777766653 4999999999999998763
No 162
>cd04955 GT1_like_6 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.30 E-value=1e-10 Score=127.99 Aligned_cols=163 Identities=12% Similarity=0.168 Sum_probs=120.1
Q ss_pred EEecCCC--CcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHH-HcCCCCCcEEEcCCcCCcHHHHHhcc
Q 003891 529 FGSFNNL--AKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLE-QLGLESLRVDLLPLILLNHDHMQAYS 605 (788)
Q Consensus 529 f~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~~~~l~~~~~-~~gi~~~rv~~~~~~~~~~~~~~~~~ 605 (788)
++.++++ .|....+++++.++.. +.+|+++|.+..... +.+.+. ..++. ++|.|.|.++ .++....|.
T Consensus 196 i~~~G~~~~~Kg~~~li~a~~~l~~---~~~l~ivG~~~~~~~----~~~~~~~~~~~~-~~V~~~g~~~-~~~~~~~~~ 266 (363)
T cd04955 196 YLLVGRIVPENNIDDLIEAFSKSNS---GKKLVIVGNADHNTP----YGKLLKEKAAAD-PRIIFVGPIY-DQELLELLR 266 (363)
T ss_pred EEEEecccccCCHHHHHHHHHhhcc---CceEEEEcCCCCcch----HHHHHHHHhCCC-CcEEEccccC-hHHHHHHHH
Confidence 4455654 8888999998887653 789999997633223 333333 56776 8999999988 578889999
Q ss_pred cccEeecCCCC--CCchhHHHHhhhCCceeecCCCccCccchhHHHhhhCCcccccCCHHHHHHHHHHHhcCHHHHHHHH
Q 003891 606 LMDISLDTFPY--AGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIAKNEDEYVQLALQLASDVTALANLR 683 (788)
Q Consensus 606 ~~Dv~Ld~~~~--~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l~~~gl~~~ia~~~~~y~~~a~~l~~d~~~~~~~r 683 (788)
.+|+++-|+.. +.+.+++|||++|+||||-.......-+ +-.+++....+.+.+...++.+|++.+..++
T Consensus 267 ~ad~~v~ps~~~e~~~~~~~EAma~G~PvI~s~~~~~~e~~--------~~~g~~~~~~~~l~~~i~~l~~~~~~~~~~~ 338 (363)
T cd04955 267 YAALFYLHGHSVGGTNPSLLEAMAYGCPVLASDNPFNREVL--------GDKAIYFKVGDDLASLLEELEADPEEVSAMA 338 (363)
T ss_pred hCCEEEeCCccCCCCChHHHHHHHcCCCEEEecCCccceee--------cCCeeEecCchHHHHHHHHHHhCHHHHHHHH
Confidence 99999888854 5688999999999999984322111111 1123333444449999999999999999999
Q ss_pred HHHHHHhhcCCCCChHHHHHHHHHHHH
Q 003891 684 MSLRDLMSKSPVCDGQNFALGLESTYR 710 (788)
Q Consensus 684 ~~~~~~~~~~~~~~~~~~~~~~e~~~~ 710 (788)
++.++...+ .|+++.++.++++.|+
T Consensus 339 ~~~~~~~~~--~fs~~~~~~~~~~~y~ 363 (363)
T cd04955 339 KAARERIRE--KYTWEKIADQYEELYK 363 (363)
T ss_pred HHHHHHHHH--hCCHHHHHHHHHHHhC
Confidence 998887654 4899999999999884
No 163
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.30 E-value=3.1e-11 Score=120.24 Aligned_cols=118 Identities=30% Similarity=0.479 Sum_probs=105.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 003891 201 AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYR 280 (788)
Q Consensus 201 ~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~ 280 (788)
++-+-.-|.-+.+.++|.+|+..|.+||+++|.++..|.+.+.+|.++|.++.|++-++.++.++|.+..+|..||.+|.
T Consensus 81 AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~ 160 (304)
T KOG0553|consen 81 AESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYL 160 (304)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHH
Confidence 34555678888889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHhhCCCChhhHHhHHHHhhhccC
Q 003891 281 DAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINE 318 (788)
Q Consensus 281 ~~g~~~eA~~~~~~al~l~p~~~~a~~~~lla~~~l~~ 318 (788)
.+|++++|++.|+++++++|++...+.++-.+..-+.+
T Consensus 161 ~~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e 198 (304)
T KOG0553|consen 161 ALGKYEEAIEAYKKALELDPDNESYKSNLKIAEQKLNE 198 (304)
T ss_pred ccCcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999888776665544443
No 164
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.27 E-value=5.8e-09 Score=128.65 Aligned_cols=305 Identities=14% Similarity=-0.003 Sum_probs=223.1
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHhCCC---------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----HH
Q 003891 28 TDLGTSLKLAGNTQDGIQKYYEALKIDPH---------YAPAYYNLGVVYSELMQYDTALGCYEKAALERPMY-----AE 93 (788)
Q Consensus 28 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~---------~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~-----~~ 93 (788)
...+..+...|++++|...+.++....+. .......++.++...|++++|...++++++..+.. ..
T Consensus 413 ~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 492 (903)
T PRK04841 413 LLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIV 492 (903)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHH
Confidence 34566667889999999999988765321 23455667888899999999999999998854432 23
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHhCCC--------
Q 003891 94 AYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWH-------- 165 (788)
Q Consensus 94 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~-------- 165 (788)
+...+|.++...|++++|...+++++........ ......++..++.++...|++++|..++++++.....
T Consensus 493 a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~-~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~ 571 (903)
T PRK04841 493 ATSVLGEVHHCKGELARALAMMQQTEQMARQHDV-YHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPM 571 (903)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcc-hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccH
Confidence 5678899999999999999999999987554322 2233456678888889999999999999999876321
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHH
Q 003891 166 YADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPH-----CAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNF---SQS 237 (788)
Q Consensus 166 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-----~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~---~~~ 237 (788)
....+..+|.++...|++++|...+++++..... ....+..++.++...|++++|...+.++..+.... ...
T Consensus 572 ~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~ 651 (903)
T PRK04841 572 HEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDW 651 (903)
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhH
Confidence 1234567888999999999999999998875321 24566778999999999999999999997763321 111
Q ss_pred HH----HHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC----hhh
Q 003891 238 LN----NLGVVYTVQGKMDAAAEMIEKAIAANPTYA----EAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDS----RNA 305 (788)
Q Consensus 238 ~~----~la~~~~~~g~~~eA~~~l~kal~~~p~~~----~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~----~~a 305 (788)
.. .....+...|+.++|..++.......+... ..+..++.++...|++++|...+++++...... ..+
T Consensus 652 ~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a 731 (903)
T PRK04841 652 IANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLN 731 (903)
T ss_pred hhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHH
Confidence 11 122445568999999999877655332222 225678999999999999999999998863221 233
Q ss_pred HHhHHHHhhhccCCCchHHHHHHHHHHH
Q 003891 306 GQNRLLAMNYINEGHDDKLFEAHRDWGK 333 (788)
Q Consensus 306 ~~~~lla~~~l~~g~~~~~~~~~~~~~~ 333 (788)
.....++..+...|+.+++.+..++...
T Consensus 732 ~~~~~la~a~~~~G~~~~A~~~L~~Al~ 759 (903)
T PRK04841 732 RNLILLNQLYWQQGRKSEAQRVLLEALK 759 (903)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4455677888888988877766555443
No 165
>PF00534 Glycos_transf_1: Glycosyl transferases group 1; InterPro: IPR001296 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Proteins containign this domain transfer UDP, ADP, GDP or CMP linked sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. The bacterial enzymes are involved in various biosynthetic processes that include exopolysaccharide biosynthesis, lipopolysaccharide core biosynthesis and the biosynthesis of the slime polysaccaride colanic acid. Mutations in this domain of the human N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein are the cause of paroxysmal nocturnal hemoglobinuria (PNH), an acquired hemolytic blood disorder characterised by venous thrombosis, erythrocyte hemolysis, infections and defective hematopoiesis.; GO: 0009058 biosynthetic process; PDB: 2L7C_A 2IV3_B 2IUY_B 2XA9_A 2XA1_B 2X6R_A 2XMP_B 2XA2_B 2X6Q_A 3QHP_B ....
Probab=99.27 E-value=2.8e-11 Score=117.39 Aligned_cols=156 Identities=14% Similarity=0.168 Sum_probs=124.1
Q ss_pred CCCCCeEEEecCCC--CcCCHHHHHHHHHHHhH-cCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcH
Q 003891 522 LTNGFITFGSFNNL--AKITPKVLQVWARILCA-VPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNH 598 (788)
Q Consensus 522 ~~~~~~~f~~~~~~--~K~~~~~~~~~~~il~~-~p~~~l~l~~~~~~~~~~~~~l~~~~~~~gi~~~rv~~~~~~~~~~ 598 (788)
.+++.++++.+++. .|....+++++..+... .|+..|+++|.+ .....+.......++. +++.|.+..+ ..
T Consensus 11 ~~~~~~~il~~g~~~~~K~~~~li~a~~~l~~~~~~~~~l~i~G~~----~~~~~~~~~~~~~~~~-~~i~~~~~~~-~~ 84 (172)
T PF00534_consen 11 IPDKKKIILFIGRLDPEKGIDLLIEAFKKLKEKKNPNYKLVIVGDG----EYKKELKNLIEKLNLK-ENIIFLGYVP-DD 84 (172)
T ss_dssp T-TTSEEEEEESESSGGGTHHHHHHHHHHHHHHHHTTEEEEEESHC----CHHHHHHHHHHHTTCG-TTEEEEESHS-HH
T ss_pred CCCCCeEEEEEecCccccCHHHHHHHHHHHHhhcCCCeEEEEEccc----cccccccccccccccc-cccccccccc-cc
Confidence 45677888888866 89999999999999875 899999999854 4566788888899997 8999999987 78
Q ss_pred HHHHhcccccEeecCCCC-CCchhHHHHhhhCCceeecCCCccCccchhHHHhhhCCccccc--CCHHHHHHHHHHHhcC
Q 003891 599 DHMQAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIA--KNEDEYVQLALQLASD 675 (788)
Q Consensus 599 ~~~~~~~~~Dv~Ld~~~~-~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l~~~gl~~~ia--~~~~~y~~~a~~l~~d 675 (788)
+....|+.+|+++-|+.+ +.|++.+|||++|+|||+-....+..-+ .-+.++++. .|.++.++...++..|
T Consensus 85 ~l~~~~~~~di~v~~s~~e~~~~~~~Ea~~~g~pvI~~~~~~~~e~~------~~~~~g~~~~~~~~~~l~~~i~~~l~~ 158 (172)
T PF00534_consen 85 ELDELYKSSDIFVSPSRNEGFGLSLLEAMACGCPVIASDIGGNNEII------NDGVNGFLFDPNDIEELADAIEKLLND 158 (172)
T ss_dssp HHHHHHHHTSEEEE-BSSBSS-HHHHHHHHTT-EEEEESSTHHHHHS------GTTTSEEEESTTSHHHHHHHHHHHHHH
T ss_pred ccccccccceeccccccccccccccccccccccceeeccccCCceee------ccccceEEeCCCCHHHHHHHHHHHHCC
Confidence 899999999999999977 8899999999999999984433322211 113344444 4669999999999999
Q ss_pred HHHHHHHHHHHHHH
Q 003891 676 VTALANLRMSLRDL 689 (788)
Q Consensus 676 ~~~~~~~r~~~~~~ 689 (788)
++.++.|+++.|++
T Consensus 159 ~~~~~~l~~~~~~~ 172 (172)
T PF00534_consen 159 PELRQKLGKNARER 172 (172)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCC
Confidence 99999999998864
No 166
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.27 E-value=5.9e-11 Score=123.74 Aligned_cols=259 Identities=18% Similarity=0.095 Sum_probs=191.5
Q ss_pred HHHHcCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHH
Q 003891 33 SLKLAGNTQDGIQKYYEALKIDPH-YAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESA 111 (788)
Q Consensus 33 ~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g~~~~A 111 (788)
.++-.|+|.++++-++ ....++. ..+....+.+++..+|+++..+.-... ..+....+...++..+...++.+.+
T Consensus 10 n~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~ei~~---~~~~~l~av~~la~y~~~~~~~e~~ 85 (290)
T PF04733_consen 10 NQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVLSEIKK---SSSPELQAVRLLAEYLSSPSDKESA 85 (290)
T ss_dssp HHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHHHHS-T---TSSCCCHHHHHHHHHHCTSTTHHCH
T ss_pred HHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHHHHhcc---CCChhHHHHHHHHHHHhCccchHHH
Confidence 3456799999998777 2233332 355678889999999999877655533 2233355667777777665677777
Q ss_pred HHHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 003891 112 IACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYE 191 (788)
Q Consensus 112 ~~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 191 (788)
+..++..+........ ..+....|.++...|++++|++.+.+. .+.+.......++..+++++.|.+.++
T Consensus 86 l~~l~~~~~~~~~~~~-----~~~~~~~A~i~~~~~~~~~AL~~l~~~-----~~lE~~al~Vqi~L~~~R~dlA~k~l~ 155 (290)
T PF04733_consen 86 LEELKELLADQAGESN-----EIVQLLAATILFHEGDYEEALKLLHKG-----GSLELLALAVQILLKMNRPDLAEKELK 155 (290)
T ss_dssp HHHHHHCCCTS---CH-----HHHHHHHHHHHCCCCHHHHHHCCCTTT-----TCHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHHHhcccccc-----HHHHHHHHHHHHHcCCHHHHHHHHHcc-----CcccHHHHHHHHHHHcCCHHHHHHHHH
Confidence 7766655433222111 112233455667789999999988764 567888888999999999999999999
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 003891 192 LAFHFNPHCAEACNNLGVIYKDRD--NLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYA 269 (788)
Q Consensus 192 ~al~~~p~~~~~~~~la~~~~~~g--~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~ 269 (788)
.+.+.+.+..-.....+++....| ++.+|...|++..+..+.++..++.++.++..+|++++|.+.+++++..+|+++
T Consensus 156 ~~~~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~ 235 (290)
T PF04733_consen 156 NMQQIDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDP 235 (290)
T ss_dssp HHHCCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHH
T ss_pred HHHhcCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCH
Confidence 998888876666666666666655 699999999998888888999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCH-HHHHHHHHHHHhhCCCChhh
Q 003891 270 EAYNNLGVLYRDAGSI-SLAIDAYEQCLKIDPDSRNA 305 (788)
Q Consensus 270 ~~~~~la~~~~~~g~~-~eA~~~~~~al~l~p~~~~a 305 (788)
+++.+++.+...+|+. +.+.+++.+....+|+++-.
T Consensus 236 d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h~~~ 272 (290)
T PF04733_consen 236 DTLANLIVCSLHLGKPTEAAERYLSQLKQSNPNHPLV 272 (290)
T ss_dssp HHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTSHHH
T ss_pred HHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCCChHH
Confidence 9999999999999998 66778888888899987654
No 167
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.27 E-value=7.9e-08 Score=100.64 Aligned_cols=300 Identities=15% Similarity=0.099 Sum_probs=216.9
Q ss_pred HHHHHHHHHcCCCChhhHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHcCCH---HHH
Q 003891 3 VASYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYA--PAYYNLGVVYSELMQY---DTA 77 (788)
Q Consensus 3 i~~~~kaL~~~P~~~~a~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~--~~~~~lg~~~~~~g~~---~~A 77 (788)
...|++|++...++..+ ..++...+..-..++.++.|.-+|+-++..-|.+- ..+-..-..--+-|+. +++
T Consensus 227 R~VyerAie~~~~d~~~----e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~ 302 (677)
T KOG1915|consen 227 RSVYERAIEFLGDDEEA----EILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDA 302 (677)
T ss_pred HHHHHHHHHHhhhHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHH
Confidence 34455555544443322 12233334444455666666666666666666652 2222222222223332 222
Q ss_pred H-----HHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhhh---hhcCCH
Q 003891 78 L-----GCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKV---KLEGDI 149 (788)
Q Consensus 78 ~-----~~~~kal~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~~~---~~~g~~ 149 (788)
+ -.|++.++.+|.+.++|+.+-.+-...|+.+.-.+.|++|+..-|....-.+..-.+|.-+..++ ....+.
T Consensus 303 Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ 382 (677)
T KOG1915|consen 303 IVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDV 382 (677)
T ss_pred HhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 2 23566677889999999999999999999999999999999988875543333333333333222 346789
Q ss_pred HHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 003891 150 NQGVAYYKKALYYNWHY----ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQ 225 (788)
Q Consensus 150 ~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~ 225 (788)
+.+.+.|+.++++-|.. +..|...|....++.+...|.+.+-.++...|.+ ...-....+-.++++++...++|+
T Consensus 383 ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~-KlFk~YIelElqL~efDRcRkLYE 461 (677)
T KOG1915|consen 383 ERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKD-KLFKGYIELELQLREFDRCRKLYE 461 (677)
T ss_pred HHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCch-hHHHHHHHHHHHHhhHHHHHHHHH
Confidence 99999999999998864 5678889999999999999999999999999984 445555666778899999999999
Q ss_pred HHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-H-HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCh
Q 003891 226 MALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTY-A-EAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSR 303 (788)
Q Consensus 226 ~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~-~-~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~ 303 (788)
+-++..|.+..+|...|.+-..+|+.+.|...|+-|++...-+ + -.|......-...|.+++|...|++.++..+...
T Consensus 462 kfle~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~k 541 (677)
T KOG1915|consen 462 KFLEFSPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVK 541 (677)
T ss_pred HHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccch
Confidence 9999999999999999999999999999999999999875433 2 2455566666788999999999999999988765
Q ss_pred hhHHh
Q 003891 304 NAGQN 308 (788)
Q Consensus 304 ~a~~~ 308 (788)
++..
T Consensus 542 -vWis 545 (677)
T KOG1915|consen 542 -VWIS 545 (677)
T ss_pred -HHHh
Confidence 5554
No 168
>cd03800 GT1_Sucrose_synthase This family is most closely related to the GT1 family of glycosyltransferases. The sucrose-phosphate synthases in this family may be unique to plants and photosynthetic bacteria. This enzyme catalyzes the synthesis of sucrose 6-phosphate from fructose 6-phosphate and uridine 5'-diphosphate-glucose, a key regulatory step of sucrose metabolism. The activity of this enzyme is regulated by phosphorylation and moderated by the concentration of various metabolites and light.
Probab=99.26 E-value=1.1e-10 Score=129.36 Aligned_cols=175 Identities=16% Similarity=0.123 Sum_probs=136.2
Q ss_pred CCCCCeEEEecCCC--CcCCHHHHHHHHHHHhHcCCcEEEEecCCCCC--HHHHHHHHHHHHHcCCCCCcEEEcCCcCCc
Q 003891 522 LTNGFITFGSFNNL--AKITPKVLQVWARILCAVPNSRLVVKCKPFCC--DSVRHRFLSTLEQLGLESLRVDLLPLILLN 597 (788)
Q Consensus 522 ~~~~~~~f~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~--~~~~~~l~~~~~~~gi~~~rv~~~~~~~~~ 597 (788)
.+.+.++|+.++++ .|..+.+++++.++....|+.+|+++|++... ......+.+..+..|+. +++.|.|.++ .
T Consensus 216 ~~~~~~~i~~~gr~~~~k~~~~ll~a~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~g~~~-~ 293 (398)
T cd03800 216 RDPDKPRILAVGRLDPRKGIDTLIRAYAELPELRERANLVIVGGPRDDILAMDEEELRELARELGVI-DRVDFPGRVS-R 293 (398)
T ss_pred cCCCCcEEEEEcccccccCHHHHHHHHHHHHHhCCCeEEEEEECCCCcchhhhhHHHHHHHHhcCCC-ceEEEeccCC-H
Confidence 34556778888876 78899999999999988999999999876432 12234566777888998 8999999987 6
Q ss_pred HHHHHhcccccEeecCCCC-CCchhHHHHhhhCCceeecCCCccCccchhHHHhhhCCccccc--CCHHHHHHHHHHHhc
Q 003891 598 HDHMQAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIA--KNEDEYVQLALQLAS 674 (788)
Q Consensus 598 ~~~~~~~~~~Dv~Ld~~~~-~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l~~~gl~~~ia--~~~~~y~~~a~~l~~ 674 (788)
++....+..+|++|-|+-+ +.|.+.+|||++|+|||+-....... ++.. +-.+++. .|++++++....+.+
T Consensus 294 ~~~~~~~~~adi~l~ps~~e~~~~~l~Ea~a~G~Pvi~s~~~~~~e-----~i~~-~~~g~~~~~~~~~~l~~~i~~l~~ 367 (398)
T cd03800 294 EDLPALYRAADVFVNPALYEPFGLTALEAMACGLPVVATAVGGPRD-----IVVD-GVTGLLVDPRDPEALAAALRRLLT 367 (398)
T ss_pred HHHHHHHHhCCEEEecccccccCcHHHHHHhcCCCEEECCCCCHHH-----HccC-CCCeEEeCCCCHHHHHHHHHHHHh
Confidence 8889999999999999866 66889999999999999844322111 2221 2233443 479999999999999
Q ss_pred CHHHHHHHHHHHHHHhhcCCCCChHHHHHHHH
Q 003891 675 DVTALANLRMSLRDLMSKSPVCDGQNFALGLE 706 (788)
Q Consensus 675 d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e 706 (788)
|++.++.++++.++...+. |+.+.++..++
T Consensus 368 ~~~~~~~~~~~a~~~~~~~--~s~~~~~~~~~ 397 (398)
T cd03800 368 DPALRRRLSRAGLRRARAR--YTWERVAARLL 397 (398)
T ss_pred CHHHHHHHHHHHHHHHHHh--CCHHHHHHHHh
Confidence 9999999999988876444 88888888765
No 169
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.26 E-value=1.5e-10 Score=106.21 Aligned_cols=105 Identities=12% Similarity=0.047 Sum_probs=80.8
Q ss_pred hcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 003891 195 HFN-PHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYN 273 (788)
Q Consensus 195 ~~~-p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~ 273 (788)
.+. ++..+..+.+|..++..|++++|.+.|+-...++|.+...|++||.++..+|++++|+..|.+++.++|+++..++
T Consensus 28 ~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~ 107 (157)
T PRK15363 28 DDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPW 107 (157)
T ss_pred CCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHH
Confidence 345 5566677777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhC
Q 003891 274 NLGVLYRDAGSISLAIDAYEQCLKID 299 (788)
Q Consensus 274 ~la~~~~~~g~~~eA~~~~~~al~l~ 299 (788)
++|.++...|+.+.|++.|+.++...
T Consensus 108 ~ag~c~L~lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 108 AAAECYLACDNVCYAIKALKAVVRIC 133 (157)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 88888888888888887777777665
No 170
>PRK00654 glgA glycogen synthase; Provisional
Probab=99.25 E-value=1.9e-10 Score=130.01 Aligned_cols=166 Identities=15% Similarity=0.122 Sum_probs=123.3
Q ss_pred CCC-CCCeEEEecCCC--CcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEE-cCCcCC
Q 003891 521 ALT-NGFITFGSFNNL--AKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDL-LPLILL 596 (788)
Q Consensus 521 ~~~-~~~~~f~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~~~~l~~~~~~~gi~~~rv~~-~~~~~~ 596 (788)
+++ ++.+++++++|+ .|..+.+++++.+++.. +.+|+++|.| .......+++..+++| +++.+ .+. .
T Consensus 276 gl~~~~~~~i~~vGRl~~~KG~~~li~a~~~l~~~--~~~lvivG~g--~~~~~~~l~~l~~~~~---~~v~~~~g~-~- 346 (466)
T PRK00654 276 GLPDDDAPLFAMVSRLTEQKGLDLVLEALPELLEQ--GGQLVLLGTG--DPELEEAFRALAARYP---GKVGVQIGY-D- 346 (466)
T ss_pred CCCCCCCcEEEEeeccccccChHHHHHHHHHHHhc--CCEEEEEecC--cHHHHHHHHHHHHHCC---CcEEEEEeC-C-
Confidence 444 367789999987 89999999999998864 7899999876 2345677888777775 45654 444 2
Q ss_pred cHHHHHhcccccEeecCCCC-CCchhHHHHhhhCCceeecCCCccCccchhHHHhhhCCcc--------------cc--c
Q 003891 597 NHDHMQAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKH--------------LI--A 659 (788)
Q Consensus 597 ~~~~~~~~~~~Dv~Ld~~~~-~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l~~~gl~~--------------~i--a 659 (788)
.+.....|+.+|++|-|+.+ +.|.+.+|||++|+|||+ +++| |++| ++ .
T Consensus 347 ~~~~~~~~~~aDv~v~PS~~E~~gl~~lEAma~G~p~V~-------~~~g-------G~~e~v~~~~~~~~~~~G~lv~~ 412 (466)
T PRK00654 347 EALAHRIYAGADMFLMPSRFEPCGLTQLYALRYGTLPIV-------RRTG-------GLADTVIDYNPEDGEATGFVFDD 412 (466)
T ss_pred HHHHHHHHhhCCEEEeCCCCCCchHHHHHHHHCCCCEEE-------eCCC-------CccceeecCCCCCCCCceEEeCC
Confidence 23344678999999999988 669999999999999887 4444 3333 33 2
Q ss_pred CCHHHHHHHHHHHhc---CHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHH
Q 003891 660 KNEDEYVQLALQLAS---DVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRNMWH 714 (788)
Q Consensus 660 ~~~~~y~~~a~~l~~---d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~ 714 (788)
.|++++.+...++.. |++.+.+++.+.. . ..|+++..++++++.|+++..
T Consensus 413 ~d~~~la~~i~~~l~~~~~~~~~~~~~~~~~---~--~~fsw~~~a~~~~~lY~~~~~ 465 (466)
T PRK00654 413 FNAEDLLRALRRALELYRQPPLWRALQRQAM---A--QDFSWDKSAEEYLELYRRLLG 465 (466)
T ss_pred CCHHHHHHHHHHHHHHhcCHHHHHHHHHHHh---c--cCCChHHHHHHHHHHHHHHhh
Confidence 478888887777665 7766666665443 2 459999999999999998764
No 171
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.25 E-value=1.2e-08 Score=109.84 Aligned_cols=289 Identities=16% Similarity=0.091 Sum_probs=189.9
Q ss_pred HHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHH
Q 003891 32 TSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESA 111 (788)
Q Consensus 32 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g~~~~A 111 (788)
..+...++|++|.+...+.+...|++..+....-.++.+.++|++|+...++-....-. ....+..+.|.+++++.++|
T Consensus 20 n~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~-~~~~fEKAYc~Yrlnk~Dea 98 (652)
T KOG2376|consen 20 NRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVI-NSFFFEKAYCEYRLNKLDEA 98 (652)
T ss_pred HHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhc-chhhHHHHHHHHHcccHHHH
Confidence 45667899999999999999999999999999999999999999999655543322211 12227889999999999999
Q ss_pred HHHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHhCCC--------------------------
Q 003891 112 IACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWH-------------------------- 165 (788)
Q Consensus 112 ~~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~-------------------------- 165 (788)
+..++ -.++.+.......+.+++. .++|++|...|+..++.+.+
T Consensus 99 lk~~~---~~~~~~~~ll~L~AQvlYr-------l~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~ 168 (652)
T KOG2376|consen 99 LKTLK---GLDRLDDKLLELRAQVLYR-------LERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVP 168 (652)
T ss_pred HHHHh---cccccchHHHHHHHHHHHH-------HhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhcc
Confidence 99998 3334433344444555555 45999999999888654322
Q ss_pred -----CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC--------CC-------CHHHHHHHHHHHHHcCCHHHHHHHHH
Q 003891 166 -----YADAMYNLGVAYGEMLKFDMAIVFYELAFHFN--------PH-------CAEACNNLGVIYKDRDNLDKAVECYQ 225 (788)
Q Consensus 166 -----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--------p~-------~~~~~~~la~~~~~~g~~~eA~~~~~ 225 (788)
..+.+++.+.++...|+|.+|++.+++++++. .. -..+...++.++..+|+.++|...|.
T Consensus 169 ~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~ 248 (652)
T KOG2376|consen 169 EVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYV 248 (652)
T ss_pred CCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHH
Confidence 33457888899999999999999999985431 11 13356778888999999999999999
Q ss_pred HHHhhCCCCHH----HHH---------------------------------------------HHHHHHHHcCCHHHHHH
Q 003891 226 MALSIKPNFSQ----SLN---------------------------------------------NLGVVYTVQGKMDAAAE 256 (788)
Q Consensus 226 ~al~~~p~~~~----~~~---------------------------------------------~la~~~~~~g~~~eA~~ 256 (788)
..++.++.+.. +-+ +.+.+.+..+..+.+.+
T Consensus 249 ~~i~~~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r~ 328 (652)
T KOG2376|consen 249 DIIKRNPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQVRE 328 (652)
T ss_pred HHHHhcCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 98887654432 111 11111111122122111
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhhHHhHHHHhhhccCCCchHHHHHHHHHH
Q 003891 257 MIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHRDWG 332 (788)
Q Consensus 257 ~l~kal~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~a~~~~lla~~~l~~g~~~~~~~~~~~~~ 332 (788)
...+.-...|....--........+...+.+|.+.+.+..+-.|.+.- ..-++.+...+..|+.+.+++....+.
T Consensus 329 ~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~-~v~L~~aQl~is~gn~~~A~~il~~~~ 403 (652)
T KOG2376|consen 329 LSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSK-VVLLLRAQLKISQGNPEVALEILSLFL 403 (652)
T ss_pred HHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhH-HHHHHHHHHHHhcCCHHHHHHHHHHHh
Confidence 111111112222111111222222223688899999999998888732 234556777788899888888776444
No 172
>cd03816 GT1_ALG1_like This family is most closely related to the GT1 family of glycosyltransferases. The yeast gene ALG1 has been shown to function as a mannosyltransferase that catalyzes the formation of dolichol pyrophosphate (Dol-PP)-GlcNAc2Man from GDP-Man and Dol-PP-Glc-NAc2, and participates in the formation of the lipid-linked precursor oligosaccharide for N-glycosylation. In humans ALG1 has been associated with the congenital disorders of glycosylation (CDG) designated as subtype CDG-Ik.
Probab=99.24 E-value=1.3e-10 Score=129.35 Aligned_cols=156 Identities=13% Similarity=0.151 Sum_probs=121.1
Q ss_pred CCCCeEEEecCCC--CcCCHHHHHHHHHHHhH------cCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCc
Q 003891 523 TNGFITFGSFNNL--AKITPKVLQVWARILCA------VPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLI 594 (788)
Q Consensus 523 ~~~~~~f~~~~~~--~K~~~~~~~~~~~il~~------~p~~~l~l~~~~~~~~~~~~~l~~~~~~~gi~~~rv~~~~~~ 594 (788)
+++.+++++.+++ .|..+.+++++..+.+. .|+.+|+++|.| +.++.+++.+++.|++ +.+.|.|.+
T Consensus 229 ~~~~~vi~~~grl~~~K~~~~li~A~~~l~~~~~~~~~~~~i~l~ivG~G----~~~~~l~~~~~~~~l~-~~~~~~g~~ 303 (415)
T cd03816 229 EERPALLVSSTSWTPDEDFGILLDALVAYEKSAATGPKLPKLLCIITGKG----PLKEKYLERIKELKLK-KVTIRTPWL 303 (415)
T ss_pred CCCceEEEEeccccCCCCHHHHHHHHHHHHHhhcccccCCCEEEEEEecC----ccHHHHHHHHHHcCCC-cEEEEcCcC
Confidence 3455667777765 79999999999988753 478999999987 5688999999999997 666666777
Q ss_pred CCcHHHHHhcccccEeecCCC----CCCchhHHHHhhhCCceeecCCCccCccchhHHHhhhCCcccccCCHHHHHHHHH
Q 003891 595 LLNHDHMQAYSLMDISLDTFP----YAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIAKNEDEYVQLAL 670 (788)
Q Consensus 595 ~~~~~~~~~~~~~Dv~Ld~~~----~~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l~~~gl~~~ia~~~~~y~~~a~ 670 (788)
+ .++....|+.+|+++-+++ ++.+++++|||+||+|||+...... ..++ .-|..+++..|.+++.+...
T Consensus 304 ~-~~~~~~~l~~aDv~v~~~~~~~~~~~p~~~~Eama~G~PVI~s~~~~~-----~eiv-~~~~~G~lv~d~~~la~~i~ 376 (415)
T cd03816 304 S-AEDYPKLLASADLGVSLHTSSSGLDLPMKVVDMFGCGLPVCALDFKCI-----DELV-KHGENGLVFGDSEELAEQLI 376 (415)
T ss_pred C-HHHHHHHHHhCCEEEEccccccccCCcHHHHHHHHcCCCEEEeCCCCH-----HHHh-cCCCCEEEECCHHHHHHHHH
Confidence 6 7889999999999985433 2358899999999999998432211 1122 22555666689999999999
Q ss_pred HHhcC---HHHHHHHHHHHHHHh
Q 003891 671 QLASD---VTALANLRMSLRDLM 690 (788)
Q Consensus 671 ~l~~d---~~~~~~~r~~~~~~~ 690 (788)
.|.+| ++.+.+|+++.++..
T Consensus 377 ~ll~~~~~~~~~~~m~~~~~~~~ 399 (415)
T cd03816 377 DLLSNFPNRGKLNSLKKGAQEES 399 (415)
T ss_pred HHHhcCCCHHHHHHHHHHHHHhh
Confidence 99999 999999999888664
No 173
>PRK14098 glycogen synthase; Provisional
Probab=99.22 E-value=3.2e-10 Score=128.02 Aligned_cols=175 Identities=14% Similarity=0.058 Sum_probs=125.2
Q ss_pred CCCeEEEecCCC--CcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHHH
Q 003891 524 NGFITFGSFNNL--AKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHM 601 (788)
Q Consensus 524 ~~~~~f~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~~~~l~~~~~~~gi~~~rv~~~~~~~~~~~~~ 601 (788)
.+.++|++++|+ .|..+.+++++.+++. ++.+|+++|.| ....++.+++..+++ +++|.|.+..+ ..+..
T Consensus 305 ~~~~~i~~vgRl~~~KG~d~li~a~~~l~~--~~~~lvivG~G--~~~~~~~l~~l~~~~---~~~V~~~g~~~-~~~~~ 376 (489)
T PRK14098 305 EETPLVGVIINFDDFQGAELLAESLEKLVE--LDIQLVICGSG--DKEYEKRFQDFAEEH---PEQVSVQTEFT-DAFFH 376 (489)
T ss_pred cCCCEEEEeccccccCcHHHHHHHHHHHHh--cCcEEEEEeCC--CHHHHHHHHHHHHHC---CCCEEEEEecC-HHHHH
Confidence 356789999977 7999999999999886 47999999976 233567788877776 37999999876 46667
Q ss_pred HhcccccEeecCCCC-CCchhHHHHhhhCCceeecCCCccCccchhHHHhhhCCcccc--cCCHHHHHHHHHH---HhcC
Q 003891 602 QAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLI--AKNEDEYVQLALQ---LASD 675 (788)
Q Consensus 602 ~~~~~~Dv~Ld~~~~-~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l~~~gl~~~i--a~~~~~y~~~a~~---l~~d 675 (788)
..|+.+|++|-|+.+ +.|.+.+|||++|+|+|+........=+.. +..-|-.+++ ..|++++.+...+ +.+|
T Consensus 377 ~~~a~aDi~l~PS~~E~~Gl~~lEAma~G~ppVv~~~GGl~d~v~~--~~~~~~~G~l~~~~d~~~la~ai~~~l~~~~~ 454 (489)
T PRK14098 377 LAIAGLDMLLMPGKIESCGMLQMFAMSYGTIPVAYAGGGIVETIEE--VSEDKGSGFIFHDYTPEALVAKLGEALALYHD 454 (489)
T ss_pred HHHHhCCEEEeCCCCCCchHHHHHHHhCCCCeEEecCCCCceeeec--CCCCCCceeEeCCCCHHHHHHHHHHHHHHHcC
Confidence 889999999999977 779999999999987776321111110000 0000222333 2477888777554 4578
Q ss_pred HHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHH
Q 003891 676 VTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRNMW 713 (788)
Q Consensus 676 ~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ 713 (788)
++.+++++.+. +. ..|+++..++++++.|+++.
T Consensus 455 ~~~~~~~~~~~---~~--~~fsw~~~a~~y~~lY~~~~ 487 (489)
T PRK14098 455 EERWEELVLEA---ME--RDFSWKNSAEEYAQLYRELL 487 (489)
T ss_pred HHHHHHHHHHH---hc--CCCChHHHHHHHHHHHHHHh
Confidence 87776665533 32 45999999999999999875
No 174
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.21 E-value=2.1e-09 Score=108.22 Aligned_cols=255 Identities=18% Similarity=0.160 Sum_probs=169.6
Q ss_pred HHHcCChHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHH
Q 003891 34 LKLAGNTQDGIQKYYEALKIDPHY-APAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAI 112 (788)
Q Consensus 34 ~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g~~~~A~ 112 (788)
+....+|.-|+.+++-.+..+.+. ......+|.|++.+|+|++|+..|+-+.+.+.-+.+.+.+++.+++-.|.|.+|.
T Consensus 32 fls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~ 111 (557)
T KOG3785|consen 32 FLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAK 111 (557)
T ss_pred HHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHH
Confidence 456789999999999887665544 3677889999999999999999999998877778899999999999999999998
Q ss_pred HHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Q 003891 113 ACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYEL 192 (788)
Q Consensus 113 ~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 192 (788)
....++ |+.+.... .++.++ .+.++- +-+-.|.+.++ +..+-...++.+.+..-.|++|++.|++
T Consensus 112 ~~~~ka----~k~pL~~R----Llfhla---hklndE-k~~~~fh~~Lq---D~~EdqLSLAsvhYmR~HYQeAIdvYkr 176 (557)
T KOG3785|consen 112 SIAEKA----PKTPLCIR----LLFHLA---HKLNDE-KRILTFHSSLQ---DTLEDQLSLASVHYMRMHYQEAIDVYKR 176 (557)
T ss_pred HHHhhC----CCChHHHH----HHHHHH---HHhCcH-HHHHHHHHHHh---hhHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 877665 44442211 122221 112222 22222333332 1223345566666666677777777777
Q ss_pred HHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc--CCHHH----------------H
Q 003891 193 AFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQ--GKMDA----------------A 254 (788)
Q Consensus 193 al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~--g~~~e----------------A 254 (788)
.+.-+|+......+++.+|.++.-++-+.+.+.-.++..|+++-+.+.++..+++. |+..+ +
T Consensus 177 vL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~ 256 (557)
T KOG3785|consen 177 VLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFI 256 (557)
T ss_pred HHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhH
Confidence 77777776666777777777777777777777777777777776666665555443 22111 1
Q ss_pred HHHHH----------HHHHhCC----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhhH
Q 003891 255 AEMIE----------KAIAANP----TYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAG 306 (788)
Q Consensus 255 ~~~l~----------kal~~~p----~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~a~ 306 (788)
...++ -|++.-| ..|++..+|...|.++++.++|....+ +++|..+.-+
T Consensus 257 ~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~K---dl~PttP~Ey 319 (557)
T KOG3785|consen 257 EYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCK---DLDPTTPYEY 319 (557)
T ss_pred HHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHh---hcCCCChHHH
Confidence 11111 1122222 236789999999999999999988765 4677766543
No 175
>PRK14099 glycogen synthase; Provisional
Probab=99.20 E-value=6.2e-10 Score=125.56 Aligned_cols=174 Identities=16% Similarity=0.120 Sum_probs=122.5
Q ss_pred CCeEEEecCCC--CcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcE-EEcCCcCCcHHHH
Q 003891 525 GFITFGSFNNL--AKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRV-DLLPLILLNHDHM 601 (788)
Q Consensus 525 ~~~~f~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~~~~l~~~~~~~gi~~~rv-~~~~~~~~~~~~~ 601 (788)
+.++||+++|+ .|..+.+++++.++++ .+.+|+++|.| .+..++.+++..++++ +++ .|+|. .++..
T Consensus 294 ~~~li~~VgRL~~~KG~d~Li~A~~~l~~--~~~~lvivG~G--~~~~~~~l~~l~~~~~---~~v~~~~G~---~~~l~ 363 (485)
T PRK14099 294 DALLLGVISRLSWQKGLDLLLEALPTLLG--EGAQLALLGSG--DAELEARFRAAAQAYP---GQIGVVIGY---DEALA 363 (485)
T ss_pred CCcEEEEEecCCccccHHHHHHHHHHHHh--cCcEEEEEecC--CHHHHHHHHHHHHHCC---CCEEEEeCC---CHHHH
Confidence 56789999887 8999999999998876 36899999876 3346677777776654 455 68886 45666
Q ss_pred Hhc-ccccEeecCCCC-CCchhHHHHhhhCCc-eeecCCCccCccchh--HHHhhhC-Ccccc--cCCHHHHHHHHHH--
Q 003891 602 QAY-SLMDISLDTFPY-AGTTTTCESLYMGVP-CVTMAGSVHAHNVGV--SLLTKVG-LKHLI--AKNEDEYVQLALQ-- 671 (788)
Q Consensus 602 ~~~-~~~Dv~Ld~~~~-~g~~t~~eal~~GvP-vvt~~g~~~~~r~~~--~~l~~~g-l~~~i--a~~~~~y~~~a~~-- 671 (788)
..| ..+|+||-|+-+ +.|.+.+|||++|+| |||-.|.. ..-+.. ......| -.+++ ..|++++.+...+
T Consensus 364 ~~~~a~aDifv~PS~~E~fGl~~lEAma~G~ppVvs~~GGl-~d~V~~~~~~~~~~~~~~G~l~~~~d~~~La~ai~~a~ 442 (485)
T PRK14099 364 HLIQAGADALLVPSRFEPCGLTQLCALRYGAVPVVARVGGL-ADTVVDANEMAIATGVATGVQFSPVTADALAAALRKTA 442 (485)
T ss_pred HHHHhcCCEEEECCccCCCcHHHHHHHHCCCCcEEeCCCCc-cceeecccccccccCCCceEEeCCCCHHHHHHHHHHHH
Confidence 665 579999999987 779999999999965 55422211 000000 0000001 12333 2478888887765
Q ss_pred -HhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHH
Q 003891 672 -LASDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRNMWH 714 (788)
Q Consensus 672 -l~~d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~ 714 (788)
+.+|++.+++|+++.+. ..|+++..++++++.|+++..
T Consensus 443 ~l~~d~~~~~~l~~~~~~-----~~fSw~~~a~~y~~lY~~l~~ 481 (485)
T PRK14099 443 ALFADPVAWRRLQRNGMT-----TDVSWRNPAQHYAALYRSLVA 481 (485)
T ss_pred HHhcCHHHHHHHHHHhhh-----hcCChHHHHHHHHHHHHHHHh
Confidence 78899888888876542 359999999999999999875
No 176
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.
Probab=99.19 E-value=4.5e-10 Score=127.48 Aligned_cols=168 Identities=14% Similarity=0.059 Sum_probs=123.8
Q ss_pred CCeEEEecCCC--CcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHHHH
Q 003891 525 GFITFGSFNNL--AKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQ 602 (788)
Q Consensus 525 ~~~~f~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~~~~l~~~~~~~gi~~~rv~~~~~~~~~~~~~~ 602 (788)
+.+++++++|+ .|..+.+++++.++.+. +.+|+++|.|. +...+.+++...+.+ +++.|.+..+ .++...
T Consensus 290 ~~~~i~~vGrl~~~Kg~~~li~a~~~l~~~--~~~lvi~G~g~--~~~~~~l~~~~~~~~---~~v~~~~~~~-~~~~~~ 361 (473)
T TIGR02095 290 DVPLFGVISRLTQQKGVDLLLAALPELLEL--GGQLVVLGTGD--PELEEALRELAERYP---GNVRVIIGYD-EALAHL 361 (473)
T ss_pred CCCEEEEEecCccccChHHHHHHHHHHHHc--CcEEEEECCCC--HHHHHHHHHHHHHCC---CcEEEEEcCC-HHHHHH
Confidence 67789999987 89999999999998864 48999998762 345667777666653 5687777654 455567
Q ss_pred hcccccEeecCCCC-CCchhHHHHhhhCCceeecCCCccCccchh--HHHhh-----hCCcccc--cCCHHHHHHHHHHH
Q 003891 603 AYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGV--SLLTK-----VGLKHLI--AKNEDEYVQLALQL 672 (788)
Q Consensus 603 ~~~~~Dv~Ld~~~~-~g~~t~~eal~~GvPvvt~~g~~~~~r~~~--~~l~~-----~gl~~~i--a~~~~~y~~~a~~l 672 (788)
.|+.+|++|-|+.+ +.|.+.+|||++|+|||+ +++|+ .++.. .+-.+++ ..|++++.+...++
T Consensus 362 ~~~~aDv~l~pS~~E~~gl~~lEAma~G~pvI~-------s~~gg~~e~v~~~~~~~~~~~G~l~~~~d~~~la~~i~~~ 434 (473)
T TIGR02095 362 IYAGADFILMPSRFEPCGLTQLYAMRYGTVPIV-------RRTGGLADTVVDGDPEAESGTGFLFEEYDPGALLAALSRA 434 (473)
T ss_pred HHHhCCEEEeCCCcCCcHHHHHHHHHCCCCeEE-------ccCCCccceEecCCCCCCCCceEEeCCCCHHHHHHHHHHH
Confidence 89999999999988 668999999999999997 44441 00000 0022233 24788888887776
Q ss_pred hc----CHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHH
Q 003891 673 AS----DVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRNM 712 (788)
Q Consensus 673 ~~----d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ 712 (788)
.. |++.+++++++.. ...|+++..++++++.|+++
T Consensus 435 l~~~~~~~~~~~~~~~~~~-----~~~fsw~~~a~~~~~~Y~~l 473 (473)
T TIGR02095 435 LRLYRQDPSLWEALQKNAM-----SQDFSWDKSAKQYVELYRSL 473 (473)
T ss_pred HHHHhcCHHHHHHHHHHHh-----ccCCCcHHHHHHHHHHHHhC
Confidence 66 8888888777553 23599999999999999863
No 177
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.19 E-value=6.1e-10 Score=102.25 Aligned_cols=107 Identities=15% Similarity=0.154 Sum_probs=99.6
Q ss_pred HHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHH
Q 003891 160 LYYN-WHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSL 238 (788)
Q Consensus 160 l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~ 238 (788)
..+. ++..+..+.+|..++..|++++|...|+.+..++|.+...|++||.++..+|++++|+..|.+++.++|+++..+
T Consensus 27 ~~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~ 106 (157)
T PRK15363 27 LDDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAP 106 (157)
T ss_pred HCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHH
Confidence 3455 667788899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 003891 239 NNLGVVYTVQGKMDAAAEMIEKAIAANP 266 (788)
Q Consensus 239 ~~la~~~~~~g~~~eA~~~l~kal~~~p 266 (788)
.++|.++...|+.+.|.+.|+.++....
T Consensus 107 ~~ag~c~L~lG~~~~A~~aF~~Ai~~~~ 134 (157)
T PRK15363 107 WAAAECYLACDNVCYAIKALKAVVRICG 134 (157)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999998863
No 178
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=99.17 E-value=1.5e-09 Score=121.55 Aligned_cols=168 Identities=16% Similarity=0.131 Sum_probs=117.4
Q ss_pred EEEecCCCCcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHH-HHHHHHHHHcCCCC------------CcEEEcCCc
Q 003891 528 TFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVR-HRFLSTLEQLGLES------------LRVDLLPLI 594 (788)
Q Consensus 528 ~f~~~~~~~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~~-~~l~~~~~~~gi~~------------~rv~~~~~~ 594 (788)
++.+..+..|....++++|.++.+..|+.+|+|+|.+ +.+ ..+++.+++.|+.. .+|.+.+.
T Consensus 235 vil~~~~~~~~~~~ll~A~~~l~~~~~~~~liivG~g----~~r~~~l~~~~~~~gl~~~~~~~~~~~~~~~~v~l~~~- 309 (425)
T PRK05749 235 VWIAASTHEGEEELVLDAHRALLKQFPNLLLILVPRH----PERFKEVEELLKKAGLSYVRRSQGEPPSADTDVLLGDT- 309 (425)
T ss_pred EEEEeCCCchHHHHHHHHHHHHHHhCCCcEEEEcCCC----hhhHHHHHHHHHhCCCcEEEccCCCCCCCCCcEEEEec-
Confidence 3444556677777889999999998999999999876 554 67889999999861 12333332
Q ss_pred CCcHHHHHhcccccEe-ecCCC-CCCchhHHHHhhhCCceeecCCCccCccchh--HHHhhhCCcccccCCHHHHHHHHH
Q 003891 595 LLNHDHMQAYSLMDIS-LDTFP-YAGTTTTCESLYMGVPCVTMAGSVHAHNVGV--SLLTKVGLKHLIAKNEDEYVQLAL 670 (788)
Q Consensus 595 ~~~~~~~~~~~~~Dv~-Ld~~~-~~g~~t~~eal~~GvPvvt~~g~~~~~r~~~--~~l~~~gl~~~ia~~~~~y~~~a~ 670 (788)
..+....|+.+||+ +-++- .+||.+.+|||++|+|||+-+. . +..+. ..+...|.- +...|.+++.+...
T Consensus 310 --~~el~~~y~~aDi~~v~~S~~e~~g~~~lEAma~G~PVI~g~~--~-~~~~e~~~~~~~~g~~-~~~~d~~~La~~l~ 383 (425)
T PRK05749 310 --MGELGLLYAIADIAFVGGSLVKRGGHNPLEPAAFGVPVISGPH--T-FNFKEIFERLLQAGAA-IQVEDAEDLAKAVT 383 (425)
T ss_pred --HHHHHHHHHhCCEEEECCCcCCCCCCCHHHHHHhCCCEEECCC--c-cCHHHHHHHHHHCCCe-EEECCHHHHHHHHH
Confidence 35788899999994 53443 4788899999999999997321 1 11111 122222321 12579999999999
Q ss_pred HHhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHH
Q 003891 671 QLASDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRN 711 (788)
Q Consensus 671 ~l~~d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~~ 711 (788)
.|.+|++.+++|+++.++.+.+. .+.++.+-+.+.+
T Consensus 384 ~ll~~~~~~~~m~~~a~~~~~~~-----~~~~~~~~~~l~~ 419 (425)
T PRK05749 384 YLLTDPDARQAYGEAGVAFLKQN-----QGALQRTLQLLEP 419 (425)
T ss_pred HHhcCHHHHHHHHHHHHHHHHhC-----ccHHHHHHHHHHH
Confidence 99999999999999999887543 2444444444444
No 179
>PHA01633 putative glycosyl transferase group 1
Probab=99.15 E-value=7.2e-10 Score=117.29 Aligned_cols=161 Identities=19% Similarity=0.198 Sum_probs=107.7
Q ss_pred CCeEEEecCCC--CcCCHHHHHHHHHHHhHcCC----cEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcC---CcC
Q 003891 525 GFITFGSFNNL--AKITPKVLQVWARILCAVPN----SRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLP---LIL 595 (788)
Q Consensus 525 ~~~~f~~~~~~--~K~~~~~~~~~~~il~~~p~----~~l~l~~~~~~~~~~~~~l~~~~~~~gi~~~rv~~~~---~~~ 595 (788)
+.++|++++|+ .|..+.++++|.++.++.|+ .+|+++|.+ .++++++. ++|.|++ .++
T Consensus 147 ~~~~i~~vGRl~~~KG~~~LI~A~~~L~~~~p~~~~~i~l~ivG~~------------~~~~l~l~-~~V~f~g~~G~~~ 213 (335)
T PHA01633 147 DTIKFGIVSGLTKRKNMDLMLQVFNELNTKYPDIAKKIHFFVISHK------------QFTQLEVP-ANVHFVAEFGHNS 213 (335)
T ss_pred CCeEEEEEeCCccccCHHHHHHHHHHHHHhCCCccccEEEEEEcHH------------HHHHcCCC-CcEEEEecCCCCC
Confidence 34678888876 99999999999999988886 467776521 23556776 8999985 444
Q ss_pred CcHHHHHhcccccEeecCCCC-CCchhHHHHhhhCCceeecCCCccCccchh--HHH-h----------hhCCccc-c-c
Q 003891 596 LNHDHMQAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGV--SLL-T----------KVGLKHL-I-A 659 (788)
Q Consensus 596 ~~~~~~~~~~~~Dv~Ld~~~~-~g~~t~~eal~~GvPvvt~~g~~~~~r~~~--~~l-~----------~~gl~~~-i-a 659 (788)
.++....|+.+|+||-|+-+ +.|.+.+|||+||+|||+-....+..-+|. ++| . .-|. .| + .
T Consensus 214 -~~dl~~~y~~aDifV~PS~~EgfGlvlLEAMA~G~PVVas~~~~l~Ei~g~~~~~Li~~~~v~~~~~~~~g~-g~~~~~ 291 (335)
T PHA01633 214 -REYIFAFYGAMDFTIVPSGTEGFGMPVLESMAMGTPVIHQLMPPLDEFTSWQWNLLIKSSKVEEYYDKEHGQ-KWKIHK 291 (335)
T ss_pred -HHHHHHHHHhCCEEEECCccccCCHHHHHHHHcCCCEEEccCCCceeecCCccceeeCCCCHHHhcCcccCc-eeeecC
Confidence 57888999999999999977 779999999999999998543333222221 111 0 0011 12 2 2
Q ss_pred CCHHHHHHHHHHH--hcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHH
Q 003891 660 KNEDEYVQLALQL--ASDVTALANLRMSLRDLMSKSPVCDGQNFALGLE 706 (788)
Q Consensus 660 ~~~~~y~~~a~~l--~~d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e 706 (788)
.|++++++...++ ..|++.+ ++.++++.. -||.+...++++
T Consensus 292 ~d~~~la~ai~~~~~~~~~~~~---~~~~~~~a~---~f~~~~~~~~~~ 334 (335)
T PHA01633 292 FQIEDMANAIILAFELQDREER---SMKLKELAK---KYDIRNLYTRFL 334 (335)
T ss_pred CCHHHHHHHHHHHHhccChhhh---hHHHHHHHH---hcCHHHHHHHhh
Confidence 3777777776666 3344333 444454432 278888777765
No 180
>PHA01630 putative group 1 glycosyl transferase
Probab=99.15 E-value=7.9e-10 Score=118.32 Aligned_cols=169 Identities=13% Similarity=0.064 Sum_probs=112.6
Q ss_pred CCeEEEecCC--CCcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHHHH
Q 003891 525 GFITFGSFNN--LAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQ 602 (788)
Q Consensus 525 ~~~~f~~~~~--~~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~~~~l~~~~~~~gi~~~rv~~~~~~~~~~~~~~ 602 (788)
+.++++...+ ..|..+.++++|.++.+..|+.+|+++|.+. ...++ .++. . +.+.++ .++...
T Consensus 141 ~~~vl~~~g~~~~~Kg~d~Li~A~~~l~~~~~~~~llivG~~~----~~~~l------~~~~-~---~~~~v~-~~~l~~ 205 (331)
T PHA01630 141 HPCVLAILPHSWDRKGGDIVVKIFHELQNEGYDFYFLIKSSNM----LDPRL------FGLN-G---VKTPLP-DDDIYS 205 (331)
T ss_pred CCEEEEEeccccccCCHHHHHHHHHHHHhhCCCEEEEEEeCcc----cchhh------cccc-c---eeccCC-HHHHHH
Confidence 3445555544 4899999999999999888999999998542 11111 1332 2 233455 578889
Q ss_pred hcccccEeecCCCC-CCchhHHHHhhhCCceeecCCCccCccchh---HHHhh------------hCCcccccCCHHHHH
Q 003891 603 AYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGV---SLLTK------------VGLKHLIAKNEDEYV 666 (788)
Q Consensus 603 ~~~~~Dv~Ld~~~~-~g~~t~~eal~~GvPvvt~~g~~~~~r~~~---~~l~~------------~gl~~~ia~~~~~y~ 666 (788)
.|+.+|+++-|+.+ +.|.+.+|||++|+|||+.....+..-+.. +++-. -+..-++..|.++..
T Consensus 206 ~y~~aDv~v~pS~~E~fgl~~lEAMA~G~PVIas~~gg~~E~i~~~~ng~lv~~~~~~~~~~~~~~~~G~~v~~~~~~~~ 285 (331)
T PHA01630 206 LFAGCDILFYPVRGGAFEIPVIEALALGLDVVVTEKGAWSEWVLSNLDVYWIKSGRKPKLWYTNPIHVGYFLDPDIEDAY 285 (331)
T ss_pred HHHhCCEEEECCccccCChHHHHHHHcCCCEEEeCCCCchhhccCCCceEEeeecccccccccCCcccccccCCCHHHHH
Confidence 99999999999977 569999999999999998443211111100 00000 011123345788888
Q ss_pred HHHHHHhcC---HHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHH
Q 003891 667 QLALQLASD---VTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRN 711 (788)
Q Consensus 667 ~~a~~l~~d---~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~~ 711 (788)
+.++++..| ++.++.++.+.+.. . .-|+.+..++++++.|++
T Consensus 286 ~~ii~~l~~~~~~~~~~~~~~~~~~~-~--~~fs~~~ia~k~~~l~~~ 330 (331)
T PHA01630 286 QKLLEALANWTPEKKKENLEGRAILY-R--ENYSYNAIAKMWEKILEK 330 (331)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHH-H--HhCCHHHHHHHHHHHHhc
Confidence 899998887 34555555554433 3 348999999999999964
No 181
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.14 E-value=2.6e-09 Score=105.29 Aligned_cols=266 Identities=15% Similarity=0.118 Sum_probs=173.4
Q ss_pred HHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHH
Q 003891 35 KLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIAC 114 (788)
Q Consensus 35 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 114 (788)
.+..+|..|++++..-.+.+|.+-..+..+|.||+...+|..|..+|++.-...|.........+..+++.+.+..|+..
T Consensus 21 I~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALrV 100 (459)
T KOG4340|consen 21 IRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALRV 100 (459)
T ss_pred HHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 56788999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred HHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 003891 115 YERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAF 194 (788)
Q Consensus 115 ~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 194 (788)
....... ++ .. ..++...+-+....+++..+....++.- ..+.++...+.|-+.++.|+++.|++-|+.++
T Consensus 101 ~~~~~D~-~~---L~---~~~lqLqaAIkYse~Dl~g~rsLveQlp--~en~Ad~~in~gCllykegqyEaAvqkFqaAl 171 (459)
T KOG4340|consen 101 AFLLLDN-PA---LH---SRVLQLQAAIKYSEGDLPGSRSLVEQLP--SENEADGQINLGCLLYKEGQYEAAVQKFQAAL 171 (459)
T ss_pred HHHhcCC-HH---HH---HHHHHHHHHHhcccccCcchHHHHHhcc--CCCccchhccchheeeccccHHHHHHHHHHHH
Confidence 7665432 11 11 1222222333344455555544443321 11455666777777777777777777777777
Q ss_pred hcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh----CCCC-------------------------HHHHHHHHHHH
Q 003891 195 HFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSI----KPNF-------------------------SQSLNNLGVVY 245 (788)
Q Consensus 195 ~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~----~p~~-------------------------~~~~~~la~~~ 245 (788)
+...-++-.-++++.++++.+++..|+++..+.++. .|+. .++++..+-++
T Consensus 172 qvsGyqpllAYniALaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIe 251 (459)
T KOG4340|consen 172 QVSGYQPLLAYNLALAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIE 251 (459)
T ss_pred hhcCCCchhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhh
Confidence 776666677777777777777777777776665543 2211 12444555666
Q ss_pred HHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhhHHhHH
Q 003891 246 TVQGKMDAAAEMIEKAIAAN--PTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRL 310 (788)
Q Consensus 246 ~~~g~~~eA~~~l~kal~~~--p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~a~~~~l 310 (788)
++.++++.|.+.+...--.. .-+|..+.+++..- ..+++.+..+-++-.++++|-.++...|++
T Consensus 252 yq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~nPfP~ETFANlL 317 (459)
T KOG4340|consen 252 YQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQNPFPPETFANLL 317 (459)
T ss_pred hhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcCCCChHHHHHHH
Confidence 67777776665443221000 01233444444322 233444445555555555554445444443
No 182
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.
Probab=99.14 E-value=9.6e-10 Score=120.67 Aligned_cols=169 Identities=15% Similarity=0.158 Sum_probs=127.8
Q ss_pred CCCCCeEEEecCCC--CcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHH
Q 003891 522 LTNGFITFGSFNNL--AKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHD 599 (788)
Q Consensus 522 ~~~~~~~f~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~~~~l~~~~~~~gi~~~rv~~~~~~~~~~~ 599 (788)
...+.++|+++++. .|..+.+++++.++... |+.+|+++|.+ .....+.+.....++ ++|.|.|.++ .++
T Consensus 216 ~~~~~~~i~~~G~~~~~k~~~~l~~~~~~l~~~-~~~~l~i~G~~----~~~~~~~~~~~~~~~--~~v~~~g~~~-~~~ 287 (394)
T cd03794 216 GLDDKFVVLYAGNIGRAQGLDTLLEAAALLKDR-PDIRFLIVGDG----PEKEELKELAKALGL--DNVTFLGRVP-KEE 287 (394)
T ss_pred CCCCcEEEEEecCcccccCHHHHHHHHHHHhhc-CCeEEEEeCCc----ccHHHHHHHHHHcCC--CcEEEeCCCC-hHH
Confidence 44566778888866 88999999999999887 99999999876 445556665566666 4799999876 688
Q ss_pred HHHhcccccEeecCCCCCC------chhHHHHhhhCCceeecCCCccCccchhHHHhhhCCccccc-CCHHHHHHHHHHH
Q 003891 600 HMQAYSLMDISLDTFPYAG------TTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIA-KNEDEYVQLALQL 672 (788)
Q Consensus 600 ~~~~~~~~Dv~Ld~~~~~g------~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l~~~gl~~~ia-~~~~~y~~~a~~l 672 (788)
....|+.+|+++-|+...+ +++++|||++|+|||+........-+ ...+..-++. .|.+++++...++
T Consensus 288 ~~~~~~~~di~i~~~~~~~~~~~~~p~~~~Ea~~~G~pvi~~~~~~~~~~~-----~~~~~g~~~~~~~~~~l~~~i~~~ 362 (394)
T cd03794 288 LPELLAAADVGLVPLKPGPAFEGVSPSKLFEYMAAGKPVLASVDGESAELV-----EEAGAGLVVPPGDPEALAAAILEL 362 (394)
T ss_pred HHHHHHhhCeeEEeccCcccccccCchHHHHHHHCCCcEEEecCCCchhhh-----ccCCcceEeCCCCHHHHHHHHHHH
Confidence 9999999999998886643 45689999999999986544322211 1111222232 3899999999999
Q ss_pred hcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHH
Q 003891 673 ASDVTALANLRMSLRDLMSKSPVCDGQNFALGL 705 (788)
Q Consensus 673 ~~d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~ 705 (788)
..|++.+..++++.++...+. |+++.+++++
T Consensus 363 ~~~~~~~~~~~~~~~~~~~~~--~s~~~~~~~~ 393 (394)
T cd03794 363 LDDPEERAEMGENGRRYVEEK--FSREKLAERL 393 (394)
T ss_pred HhChHHHHHHHHHHHHHHHHh--hcHHHHHHhc
Confidence 999999999999988876533 7888887765
No 183
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=99.12 E-value=7.1e-09 Score=109.78 Aligned_cols=158 Identities=17% Similarity=0.150 Sum_probs=145.5
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 003891 164 WHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGV 243 (788)
Q Consensus 164 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~ 243 (788)
|....+++..+..++..|++++|+..++..++..|+++..+...+.++.+.++.++|.+.+++++...|+.+....++|.
T Consensus 303 ~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~ 382 (484)
T COG4783 303 RGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQ 382 (484)
T ss_pred ccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHH
Confidence 67788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhhHHhHHHHhhhccCCCc
Q 003891 244 VYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHD 321 (788)
Q Consensus 244 ~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~a~~~~lla~~~l~~g~~ 321 (788)
+|.+.|++.+|+..++..+..+|+++..|..|+..|..+|+..+|...+.+.+.+......+...+..+......|..
T Consensus 383 all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~~~G~~~~A~~~l~~A~~~~~~~~~ 460 (484)
T COG4783 383 ALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGYALAGRLEQAIIFLMRASQQVKLGFP 460 (484)
T ss_pred HHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhccCCcH
Confidence 999999999999999999999999999999999999999999999999999998888877776655555555555544
No 184
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=99.11 E-value=3.1e-08 Score=105.04 Aligned_cols=153 Identities=20% Similarity=0.151 Sum_probs=105.8
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHH
Q 003891 55 PHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAI 134 (788)
Q Consensus 55 p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 134 (788)
|....++|..+..++..|++++|+..+...+...|+|+..+...+.++...++..+|.+.+++++.++|+......+++.
T Consensus 303 ~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~ 382 (484)
T COG4783 303 RGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQ 382 (484)
T ss_pred ccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHH
Confidence 56677777777777777777777777777777777777777777777777777777777777777777776555544444
Q ss_pred HHHHhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Q 003891 135 ALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDR 214 (788)
Q Consensus 135 ~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 214 (788)
++.. .|++++|+..++..+..+|+++..|..++..|..+|+..+|...+ +..|...
T Consensus 383 all~-------~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~-----------------AE~~~~~ 438 (484)
T COG4783 383 ALLK-------GGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLAR-----------------AEGYALA 438 (484)
T ss_pred HHHh-------cCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHH-----------------HHHHHhC
Confidence 4444 446667777777777777777777777777777777665554433 3445556
Q ss_pred CCHHHHHHHHHHHHhhC
Q 003891 215 DNLDKAVECYQMALSIK 231 (788)
Q Consensus 215 g~~~eA~~~~~~al~~~ 231 (788)
|++++|+..+..+.+..
T Consensus 439 G~~~~A~~~l~~A~~~~ 455 (484)
T COG4783 439 GRLEQAIIFLMRASQQV 455 (484)
T ss_pred CCHHHHHHHHHHHHHhc
Confidence 66777776666666554
No 185
>cd03804 GT1_wbaZ_like This family is most closely related to the GT1 family of glycosyltransferases. wbaZ in Salmonella enterica has been shown to possess the mannosyl transferase activity. The members of this family are found in certain bacteria and Archaea.
Probab=99.11 E-value=1.6e-09 Score=118.05 Aligned_cols=144 Identities=12% Similarity=0.091 Sum_probs=102.3
Q ss_pred CCCcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHHHHhcccccEeecC
Q 003891 534 NLAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDT 613 (788)
Q Consensus 534 ~~~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~~~~l~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~~Dv~Ld~ 613 (788)
...|..+.+++++.+ .| .+|+++|.+ +..+.+++ +.. ++|.|+|.++ .++....|..+|+++-|
T Consensus 205 ~~~K~~~~li~a~~~----~~-~~l~ivG~g----~~~~~l~~-----~~~-~~V~~~g~~~-~~~~~~~~~~ad~~v~p 268 (351)
T cd03804 205 VPYKRIDLAIEAFNK----LG-KRLVVIGDG----PELDRLRA-----KAG-PNVTFLGRVS-DEELRDLYARARAFLFP 268 (351)
T ss_pred ccccChHHHHHHHHH----CC-CcEEEEECC----hhHHHHHh-----hcC-CCEEEecCCC-HHHHHHHHHhCCEEEEC
Confidence 347888888888765 45 789999877 44445444 454 8999999997 68899999999999998
Q ss_pred CCCCCchhHHHHhhhCCceeecCCCccCccchhHHHhhhCCcccc--cCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHhh
Q 003891 614 FPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLI--AKNEDEYVQLALQLASDVTALANLRMSLRDLMS 691 (788)
Q Consensus 614 ~~~~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l~~~gl~~~i--a~~~~~y~~~a~~l~~d~~~~~~~r~~~~~~~~ 691 (788)
+..+.|.+.+|||+||+|||+........-+ . -|-.+++ ..|++++++....+.+|++ .+++.++++..
T Consensus 269 s~e~~g~~~~Eama~G~Pvi~~~~~~~~e~i-----~-~~~~G~~~~~~~~~~la~~i~~l~~~~~---~~~~~~~~~~~ 339 (351)
T cd03804 269 AEEDFGIVPVEAMASGTPVIAYGKGGALETV-----I-DGVTGILFEEQTVESLAAAVERFEKNED---FDPQAIRAHAE 339 (351)
T ss_pred CcCCCCchHHHHHHcCCCEEEeCCCCCccee-----e-CCCCEEEeCCCCHHHHHHHHHHHHhCcc---cCHHHHHHHHH
Confidence 8877789999999999999985432221111 1 1223333 3578999999999999984 23333333322
Q ss_pred cCCCCChHHHHHHH
Q 003891 692 KSPVCDGQNFALGL 705 (788)
Q Consensus 692 ~~~~~~~~~~~~~~ 705 (788)
.|+.++|.+++
T Consensus 340 ---~~~~~~~~~~~ 350 (351)
T cd03804 340 ---RFSESRFREKI 350 (351)
T ss_pred ---hcCHHHHHHHh
Confidence 27888888765
No 186
>PLN02605 monogalactosyldiacylglycerol synthase
Probab=99.10 E-value=3.8e-09 Score=116.40 Aligned_cols=265 Identities=12% Similarity=0.090 Sum_probs=153.1
Q ss_pred HHHHHHHHhCCCcEEEeCCCCCCCCccc--ccc-c-----CCCCeEEecccC---CCCCCCCCccEEEecCCCCCcCc-c
Q 003891 423 KKVAAMVREDKIDILVELTGHTANNKLG--MMA-C-----QPAPVQVTWIGY---PNTTGLPTIDYRITDSLADPPET-K 490 (788)
Q Consensus 423 ~~~a~~i~~d~idilvdl~g~t~~~~~~--~~a-~-----r~Apvq~~~~g~---~~ttg~~~~Dy~i~d~~~~p~~~-~ 490 (788)
..+.+.|++.++||+|-. |.-.++.. ++. + ...|+=+..-.+ ....-.+.+|++++-.-...... +
T Consensus 90 ~~l~~~i~~~~pDvIi~t--hp~~~~~~~~~l~~~~~~~~~~~p~~~~~tD~~~~~~~w~~~~~d~~~~~s~~~~~~l~~ 167 (382)
T PLN02605 90 REVAKGLMKYKPDIIVSV--HPLMQHVPLRVLRWQGKELGKKIPFTTVVTDLGTCHPTWFHKGVTRCFCPSEEVAKRALK 167 (382)
T ss_pred HHHHHHHHhcCcCEEEEe--CcCcccCHHHHHHHHhhccCCCCCEEEEECCCCCcCcccccCCCCEEEECCHHHHHHHHH
Confidence 467789999999999863 43323221 221 1 134542211111 12234567888885321111111 1
Q ss_pred CCC-ccceEEcCCCc-cccCCCC-CCCCCCCCCCCCCCCeEEEecCCC--CcCCHHHHHHHHHHHh----HcCCcEE-EE
Q 003891 491 QKH-VEELIRLPECF-LCYTPSP-EAGPVCPTPALTNGFITFGSFNNL--AKITPKVLQVWARILC----AVPNSRL-VV 560 (788)
Q Consensus 491 ~~~-~e~l~~lp~~~-~~~~~~~-~~~~~~~~~~~~~~~~~f~~~~~~--~K~~~~~~~~~~~il~----~~p~~~l-~l 560 (788)
... .+++...+... -.|.++. .....+...+++++.++++.+++. .|....+++.+.+++. ..|+.++ ++
T Consensus 168 ~g~~~~ki~v~g~~v~~~f~~~~~~~~~~r~~~gl~~~~~~il~~Gg~~g~~~~~~li~~l~~~~~~~~~~~~~~~~~vi 247 (382)
T PLN02605 168 RGLEPSQIRVYGLPIRPSFARAVRPKDELRRELGMDEDLPAVLLMGGGEGMGPLEETARALGDSLYDKNLGKPIGQVVVI 247 (382)
T ss_pred cCCCHHHEEEECcccCHhhccCCCCHHHHHHHcCCCCCCcEEEEECCCcccccHHHHHHHHHHhhccccccCCCceEEEE
Confidence 112 35565554221 0121111 111122345677777777777754 7777888888877652 2366654 44
Q ss_pred ecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHHHHhcccccEeecCCCCCCchhHHHHhhhCCceeecCCCcc
Q 003891 561 KCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVH 640 (788)
Q Consensus 561 ~~~~~~~~~~~~~l~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~~Dv~Ld~~~~~g~~t~~eal~~GvPvvt~~g~~~ 640 (788)
.|.+ ...++++++ .... .+|.|+|.+. +...+|+.+|+++.+ +|+.|++|||++|+|||+..--.-
T Consensus 248 ~G~~---~~~~~~L~~----~~~~-~~v~~~G~~~---~~~~l~~aaDv~V~~---~g~~ti~EAma~g~PvI~~~~~pg 313 (382)
T PLN02605 248 CGRN---KKLQSKLES----RDWK-IPVKVRGFVT---NMEEWMGACDCIITK---AGPGTIAEALIRGLPIILNGYIPG 313 (382)
T ss_pred ECCC---HHHHHHHHh----hccc-CCeEEEeccc---cHHHHHHhCCEEEEC---CCcchHHHHHHcCCCEEEecCCCc
Confidence 4543 233444443 3333 5799999975 466677779999963 367899999999999998652111
Q ss_pred CccchhHHHhhhCCcccccCCHHHHHHHHHHHhcC-HHHHHHHHHHHHHHhhcCCCCChHHHHHHHHH
Q 003891 641 AHNVGVSLLTKVGLKHLIAKNEDEYVQLALQLASD-VTALANLRMSLRDLMSKSPVCDGQNFALGLES 707 (788)
Q Consensus 641 ~~r~~~~~l~~~gl~~~ia~~~~~y~~~a~~l~~d-~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~ 707 (788)
....++-.+...|.. +...|+++..+...+|..| ++.+++|+++.++.... ......+..+.+
T Consensus 314 qe~gn~~~i~~~g~g-~~~~~~~~la~~i~~ll~~~~~~~~~m~~~~~~~~~~---~a~~~i~~~l~~ 377 (382)
T PLN02605 314 QEEGNVPYVVDNGFG-AFSESPKEIARIVAEWFGDKSDELEAMSENALKLARP---EAVFDIVHDLHE 377 (382)
T ss_pred cchhhHHHHHhCCce-eecCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC---chHHHHHHHHHH
Confidence 112233445555654 3458999999999999988 99999999998876432 245666655543
No 187
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.08 E-value=3.5e-08 Score=97.50 Aligned_cols=275 Identities=18% Similarity=0.134 Sum_probs=210.7
Q ss_pred HHHHHHHHHHcCCCChhhHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 003891 2 LVASYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCY 81 (788)
Q Consensus 2 Ai~~~~kaL~~~P~~~~a~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 81 (788)
||+++..-.+.+|.+... +..+|.+|+...+|..|..+|++.-...|......+..+..+++.+.+..|+...
T Consensus 29 aI~~l~s~~Er~p~~rAg-------LSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALrV~ 101 (459)
T KOG4340|consen 29 AIQLLGSELERSPRSRAG-------LSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALRVA 101 (459)
T ss_pred HHHHHHHHHhcCccchHH-------HHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHHHH
Confidence 566677777778876655 7778899999999999999999999999999999999999999999999999988
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHH
Q 003891 82 EKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALY 161 (788)
Q Consensus 82 ~kal~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~ 161 (788)
........-..++...-+-+.+..+++..+....++.-. .+. +....+.|.+..+.|++++|++-|+.+++
T Consensus 102 ~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~---en~------Ad~~in~gCllykegqyEaAvqkFqaAlq 172 (459)
T KOG4340|consen 102 FLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPS---ENE------ADGQINLGCLLYKEGQYEAAVQKFQAALQ 172 (459)
T ss_pred HHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccC---CCc------cchhccchheeeccccHHHHHHHHHHHHh
Confidence 776543222345555667777788888887776665421 111 34556677777888999999999999999
Q ss_pred hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc----CCC-------------------------CHHHHHHHHHHHH
Q 003891 162 YNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHF----NPH-------------------------CAEACNNLGVIYK 212 (788)
Q Consensus 162 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~----~p~-------------------------~~~~~~~la~~~~ 212 (788)
...-++-.-++++.++++.++++.|+++..+.++. .|+ -.++++..+.+++
T Consensus 173 vsGyqpllAYniALaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIey 252 (459)
T KOG4340|consen 173 VSGYQPLLAYNLALAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEY 252 (459)
T ss_pred hcCCCchhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhh
Confidence 99888889999999999999999999998887764 332 1345667788899
Q ss_pred HcCCHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 003891 213 DRDNLDKAVECYQMALSIK--PNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAID 290 (788)
Q Consensus 213 ~~g~~~eA~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~~eA~~ 290 (788)
+.++++.|.+.+...--.+ .-++..+.+++..- ..+++.+...-++=.+.++|--++.+.++-.+|.+..-++-|..
T Consensus 253 q~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~nPfP~ETFANlLllyCKNeyf~lAAD 331 (459)
T KOG4340|consen 253 QLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQNPFPPETFANLLLLYCKNEYFDLAAD 331 (459)
T ss_pred hcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcCCCChHHHHHHHHHHhhhHHHhHHHH
Confidence 9999999887664321111 12355677776543 34667777777788888899778889999999998888887776
Q ss_pred HHH
Q 003891 291 AYE 293 (788)
Q Consensus 291 ~~~ 293 (788)
.+-
T Consensus 332 vLA 334 (459)
T KOG4340|consen 332 VLA 334 (459)
T ss_pred HHh
Confidence 543
No 188
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.08 E-value=2.7e-09 Score=115.40 Aligned_cols=109 Identities=19% Similarity=0.221 Sum_probs=102.0
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC
Q 003891 27 LTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRG 106 (788)
Q Consensus 27 l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g 106 (788)
+...|..++..|++++|+.+|+++++.+|++..+++++|.+|..+|++++|+..++++++++|.++.+++.+|.++..+|
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg 84 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLE 84 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhC
Confidence 56678889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Q 003891 107 DLESAIACYERCLAVSPNFEIAKNNMAIA 135 (788)
Q Consensus 107 ~~~~A~~~~~~al~~~p~~~~~~~~la~~ 135 (788)
++++|+..|+++++++|++......+..+
T Consensus 85 ~~~eA~~~~~~al~l~P~~~~~~~~l~~~ 113 (356)
T PLN03088 85 EYQTAKAALEKGASLAPGDSRFTKLIKEC 113 (356)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 99999999999999999998665554433
No 189
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=99.06 E-value=1e-08 Score=107.71 Aligned_cols=182 Identities=22% Similarity=0.274 Sum_probs=119.2
Q ss_pred HHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 003891 99 GVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYG 178 (788)
Q Consensus 99 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 178 (788)
|.+|...+++++|.+.|.++.+...+.. .....+..+...+.++... ++++|+.+|++++. +|.
T Consensus 42 a~~fk~~~~~~~A~~ay~kAa~~~~~~~-~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~--------------~y~ 105 (282)
T PF14938_consen 42 ANCFKLAKDWEKAAEAYEKAADCYEKLG-DKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIE--------------IYR 105 (282)
T ss_dssp HHHHHHTT-CHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHH--------------HHH
T ss_pred HHHHHHHhccchhHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHH--------------HHH
Confidence 5666777777777777777765533211 1223345555555555444 77777777777763 455
Q ss_pred HcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhhCC--CC----HHHHHHHHHHHHHcCCH
Q 003891 179 EMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDR-DNLDKAVECYQMALSIKP--NF----SQSLNNLGVVYTVQGKM 251 (788)
Q Consensus 179 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-g~~~eA~~~~~~al~~~p--~~----~~~~~~la~~~~~~g~~ 251 (788)
..|++..|-. .+..+|.+|... |++++|+++|++|++... +. ...+..+|.++...|+|
T Consensus 106 ~~G~~~~aA~--------------~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y 171 (282)
T PF14938_consen 106 EAGRFSQAAK--------------CLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRY 171 (282)
T ss_dssp HCT-HHHHHH--------------HHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-H
T ss_pred hcCcHHHHHH--------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCH
Confidence 6666666543 444567777777 788888888888877632 11 33667888999999999
Q ss_pred HHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhhHHhHH
Q 003891 252 DAAAEMIEKAIAANPTY-------AEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRL 310 (788)
Q Consensus 252 ~eA~~~l~kal~~~p~~-------~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~a~~~~l 310 (788)
++|++.|++.....-++ ...++..+.|+...|+...|...+++....+|......-..+
T Consensus 172 ~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~ 237 (282)
T PF14938_consen 172 EEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKF 237 (282)
T ss_dssp HHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHH
T ss_pred HHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHH
Confidence 99999999988753221 245667888999999999999999999999998766554443
No 190
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.05 E-value=3.8e-09 Score=114.26 Aligned_cols=105 Identities=16% Similarity=0.165 Sum_probs=52.0
Q ss_pred HHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHH
Q 003891 174 GVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDA 253 (788)
Q Consensus 174 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~e 253 (788)
|..++..|++++|+..|+++++.+|++..++.++|.++..+|++++|+..++++++++|+++.+++.+|.++..+|++++
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~e 88 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQT 88 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHH
Confidence 44444445555555555555555555445555555555555555555555555555555444445555555555555555
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHH
Q 003891 254 AAEMIEKAIAANPTYAEAYNNLGVL 278 (788)
Q Consensus 254 A~~~l~kal~~~p~~~~~~~~la~~ 278 (788)
|+..|+++++++|++..+...++.+
T Consensus 89 A~~~~~~al~l~P~~~~~~~~l~~~ 113 (356)
T PLN03088 89 AKAALEKGASLAPGDSRFTKLIKEC 113 (356)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 5555555555555444444444444
No 191
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.05 E-value=2.4e-07 Score=100.48 Aligned_cols=271 Identities=14% Similarity=0.177 Sum_probs=144.7
Q ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC---------------------------------------------
Q 003891 22 CLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPH--------------------------------------------- 56 (788)
Q Consensus 22 ~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~--------------------------------------------- 56 (788)
.++.++..||..|...|.+++|...|++++..--.
T Consensus 246 q~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~ 325 (835)
T KOG2047|consen 246 QLGFLWCSLADYYIRSGLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMAR 325 (835)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHH
Confidence 35667888999999999999999999999875211
Q ss_pred ----------------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hCCC-----CHHHHHHHHHHHHHCCCH
Q 003891 57 ----------------------YAPAYYNLGVVYSELMQYDTALGCYEKAAL-ERPM-----YAEAYCNMGVIYKNRGDL 108 (788)
Q Consensus 57 ----------------------~~~~~~~lg~~~~~~g~~~~A~~~~~kal~-~~p~-----~~~~~~~la~~~~~~g~~ 108 (788)
+..-|... +-+..|+..+-+..|.+|++ .+|. -...|..+|..|...|+.
T Consensus 326 ~e~lm~rr~~~lNsVlLRQn~~nV~eW~kR--V~l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l 403 (835)
T KOG2047|consen 326 FESLMNRRPLLLNSVLLRQNPHNVEEWHKR--VKLYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDL 403 (835)
T ss_pred HHHHHhccchHHHHHHHhcCCccHHHHHhh--hhhhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcH
Confidence 11111110 11122334444444444443 2332 124555566666666666
Q ss_pred HHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHhCCC------------------CHHHH
Q 003891 109 ESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWH------------------YADAM 170 (788)
Q Consensus 109 ~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~------------------~~~~~ 170 (788)
+.|...|+++.+..-... ..++.++..-|.......+++.|.++.+++...-.. ...+|
T Consensus 404 ~~aRvifeka~~V~y~~v---~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiW 480 (835)
T KOG2047|consen 404 DDARVIFEKATKVPYKTV---EDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIW 480 (835)
T ss_pred HHHHHHHHHhhcCCccch---HHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHH
Confidence 666666666655433222 233445555555555555666666666555432111 11234
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCHHHHHHHHHHH---
Q 003891 171 YNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIK--PNFSQSLNNLGVVY--- 245 (788)
Q Consensus 171 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~--p~~~~~~~~la~~~--- 245 (788)
..++.+....|-++.....|++.+.+.--.+....|.|..+....-++++.+.|++.+.+. |.-.++|...-..+
T Consensus 481 s~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~r 560 (835)
T KOG2047|consen 481 SMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKR 560 (835)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHH
Confidence 4555555555666666666666666555555666666666666666666666666665553 23333333322221
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 003891 246 TVQGKMDAAAEMIEKAIAANPTY--AEAYNNLGVLYRDAGSISLAIDAYEQCLK 297 (788)
Q Consensus 246 ~~~g~~~eA~~~l~kal~~~p~~--~~~~~~la~~~~~~g~~~eA~~~~~~al~ 297 (788)
+.....+.|..+|++|++..|.. ..++...+.+-.+-|-...|+..|+++-.
T Consensus 561 ygg~klEraRdLFEqaL~~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~ 614 (835)
T KOG2047|consen 561 YGGTKLERARDLFEQALDGCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATS 614 (835)
T ss_pred hcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 22234556666666666655422 12344455555555666666666665543
No 192
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=99.05 E-value=6.1e-09 Score=114.89 Aligned_cols=266 Identities=11% Similarity=0.094 Sum_probs=149.7
Q ss_pred HHHHHHHHhCCCcEEEeCCCCCCCCcccccccCC--CCeE--EecccCCCCCCCCCccEEEecCCCCCcCc--cCCCccc
Q 003891 423 KKVAAMVREDKIDILVELTGHTANNKLGMMACQP--APVQ--VTWIGYPNTTGLPTIDYRITDSLADPPET--KQKHVEE 496 (788)
Q Consensus 423 ~~~a~~i~~d~idilvdl~g~t~~~~~~~~a~r~--Apvq--~~~~g~~~ttg~~~~Dy~i~d~~~~p~~~--~~~~~e~ 496 (788)
..+.+.|++.++||+|-..+.. +-..+.+.+- -|+= ++..|.+...-.+.+|.+++-.-..-... ...-.|+
T Consensus 94 ~~l~~~l~~~~pD~Vi~~~~~~--~~~~~~~~~~~~ip~~~~~td~~~~~~~~~~~ad~i~~~s~~~~~~l~~~gi~~~k 171 (380)
T PRK13609 94 KRLKLLLQAEKPDIVINTFPII--AVPELKKQTGISIPTYNVLTDFCLHKIWVHREVDRYFVATDHVKKVLVDIGVPPEQ 171 (380)
T ss_pred HHHHHHHHHhCcCEEEEcChHH--HHHHHHHhcCCCCCeEEEeCCCCCCcccccCCCCEEEECCHHHHHHHHHcCCChhH
Confidence 5677889999999999532222 1111112222 2332 11123233333456777665321000000 0112245
Q ss_pred eEEcCCCcc-ccCCCCCCCCCCCCCCCCCC-CeEEEecCCC--CcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHH
Q 003891 497 LIRLPECFL-CYTPSPEAGPVCPTPALTNG-FITFGSFNNL--AKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRH 572 (788)
Q Consensus 497 l~~lp~~~~-~~~~~~~~~~~~~~~~~~~~-~~~f~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~~~ 572 (788)
+...+.... .|.+.......+...+++.+ .+++...++. .|....+++.+ ...|+.++++++++ ....++
T Consensus 172 i~v~G~p~~~~f~~~~~~~~~~~~~~l~~~~~~il~~~G~~~~~k~~~~li~~l----~~~~~~~~viv~G~--~~~~~~ 245 (380)
T PRK13609 172 VVETGIPIRSSFELKINPDIIYNKYQLCPNKKILLIMAGAHGVLGNVKELCQSL----MSVPDLQVVVVCGK--NEALKQ 245 (380)
T ss_pred EEEECcccChHHcCcCCHHHHHHHcCCCCCCcEEEEEcCCCCCCcCHHHHHHHH----hhCCCcEEEEEeCC--CHHHHH
Confidence 554432110 11111111011122345433 4444333443 35555555544 34588898877542 134677
Q ss_pred HHHHHHHHcCCCCCcEEEcCCcCCcHHHHHhcccccEeecCCCCCCchhHHHHhhhCCceeecC-CCccCccchhHHHhh
Q 003891 573 RFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMA-GSVHAHNVGVSLLTK 651 (788)
Q Consensus 573 ~l~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~~Dv~Ld~~~~~g~~t~~eal~~GvPvvt~~-g~~~~~r~~~~~l~~ 651 (788)
.+++..+..+ ++|+|+|.+. +....|..+|+++. -+||.|++|||++|+|||+.. ... .....+.++..
T Consensus 246 ~l~~~~~~~~---~~v~~~g~~~---~~~~l~~~aD~~v~---~~gg~t~~EA~a~g~PvI~~~~~~g-~~~~n~~~~~~ 315 (380)
T PRK13609 246 SLEDLQETNP---DALKVFGYVE---NIDELFRVTSCMIT---KPGGITLSEAAALGVPVILYKPVPG-QEKENAMYFER 315 (380)
T ss_pred HHHHHHhcCC---CcEEEEechh---hHHHHHHhccEEEe---CCCchHHHHHHHhCCCEEECCCCCC-cchHHHHHHHh
Confidence 7777766655 6899999864 44567778999983 357889999999999999843 111 11222334444
Q ss_pred hCCcccccCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHH
Q 003891 652 VGLKHLIAKNEDEYVQLALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYR 710 (788)
Q Consensus 652 ~gl~~~ia~~~~~y~~~a~~l~~d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~ 710 (788)
.|.. ++..|.+++.+...++.+|++.+++|+++.++.. .-++.+.+++.+++.+.
T Consensus 316 ~G~~-~~~~~~~~l~~~i~~ll~~~~~~~~m~~~~~~~~---~~~s~~~i~~~i~~~~~ 370 (380)
T PRK13609 316 KGAA-VVIRDDEEVFAKTEALLQDDMKLLQMKEAMKSLY---LPEPADHIVDDILAENH 370 (380)
T ss_pred CCcE-EEECCHHHHHHHHHHHHCCHHHHHHHHHHHHHhC---CCchHHHHHHHHHHhhh
Confidence 4543 3457999999999999999999999999887542 22578888888877654
No 193
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.05 E-value=3.5e-09 Score=110.52 Aligned_cols=232 Identities=15% Similarity=-0.005 Sum_probs=169.1
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHH
Q 003891 25 IVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERP--MYAEAYCNMGVIY 102 (788)
Q Consensus 25 ~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p--~~~~~~~~la~~~ 102 (788)
.....+.+++..+|+++..+.-... ..+....+...++..+...++.+.++..++..+.... .+.......|.++
T Consensus 36 e~~~~~~Rs~iAlg~~~~vl~ei~~---~~~~~l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~ 112 (290)
T PF04733_consen 36 ERDFYQYRSYIALGQYDSVLSEIKK---SSSPELQAVRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAATIL 112 (290)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHS-T---TSSCCCHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChhHHHHHhcc---CCChhHHHHHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHHHH
Confidence 3455667788888998876655433 2233455666677666555666777776665543322 3455666778888
Q ss_pred HHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-
Q 003891 103 KNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEML- 181 (788)
Q Consensus 103 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g- 181 (788)
...|++++|++.+.+. .+.+..... -.++...++++.|.+.++++.+.+.+..-.....+++....|
T Consensus 113 ~~~~~~~~AL~~l~~~-----~~lE~~al~-------Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~ 180 (290)
T PF04733_consen 113 FHEGDYEEALKLLHKG-----GSLELLALA-------VQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATGG 180 (290)
T ss_dssp CCCCHHHHHHCCCTTT-----TCHHHHHHH-------HHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTT
T ss_pred HHcCCHHHHHHHHHcc-----CcccHHHHH-------HHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCc
Confidence 8899999999888764 233333222 234555779999999999998887776655555666666666
Q ss_pred -ChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH-HHHHHHHH
Q 003891 182 -KFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKM-DAAAEMIE 259 (788)
Q Consensus 182 -~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~-~eA~~~l~ 259 (788)
++.+|...|++.....+.++..++.++.++..+|++++|.+.++++++.+|.+++++.+++.+....|+. +.+.+++.
T Consensus 181 e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~ 260 (290)
T PF04733_consen 181 EKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLS 260 (290)
T ss_dssp TCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHH
Confidence 6999999999988888889999999999999999999999999999999999999999999999999998 66778888
Q ss_pred HHHHhCCCCHHH
Q 003891 260 KAIAANPTYAEA 271 (788)
Q Consensus 260 kal~~~p~~~~~ 271 (788)
+....+|+++-.
T Consensus 261 qL~~~~p~h~~~ 272 (290)
T PF04733_consen 261 QLKQSNPNHPLV 272 (290)
T ss_dssp HCHHHTTTSHHH
T ss_pred HHHHhCCCChHH
Confidence 888889987643
No 194
>PRK10125 putative glycosyl transferase; Provisional
Probab=99.05 E-value=2.8e-09 Score=117.69 Aligned_cols=149 Identities=14% Similarity=0.098 Sum_probs=105.4
Q ss_pred CCCeEEEecCC----CCcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHH
Q 003891 524 NGFITFGSFNN----LAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHD 599 (788)
Q Consensus 524 ~~~~~f~~~~~----~~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~~~~l~~~~~~~gi~~~rv~~~~~~~~~~~ 599 (788)
.+..+++++++ ..|..+.+++++.++ .++.+|+++|.+. + .. .+++.+.|...+..+
T Consensus 239 ~~~~~il~v~~~~~~~~Kg~~~li~A~~~l---~~~~~L~ivG~g~---~-~~------------~~~v~~~g~~~~~~~ 299 (405)
T PRK10125 239 QGKPKIAVVAHDLRYDGKTDQQLVREMMAL---GDKIELHTFGKFS---P-FT------------AGNVVNHGFETDKRK 299 (405)
T ss_pred CCCCEEEEEEeccccCCccHHHHHHHHHhC---CCCeEEEEEcCCC---c-cc------------ccceEEecCcCCHHH
Confidence 34445666665 246668888887764 3678999998751 1 10 256888888766788
Q ss_pred HHHhcccccEeecCCCC-CCchhHHHHhhhCCceeecCCCccCccchhHHHhhhCCcccc---------cCCHHHHHHHH
Q 003891 600 HMQAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLI---------AKNEDEYVQLA 669 (788)
Q Consensus 600 ~~~~~~~~Dv~Ld~~~~-~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l~~~gl~~~i---------a~~~~~y~~~a 669 (788)
....|+.+|+|+-|+-+ +.+++.+|||+||+|||+ +++| |++|+| ..|.+++++
T Consensus 300 l~~~y~~aDvfV~pS~~Egfp~vilEAmA~G~PVVa-------t~~g-------G~~Eiv~~~~G~lv~~~d~~~La~-- 363 (405)
T PRK10125 300 LMSALNQMDALVFSSRVDNYPLILCEALSIGVPVIA-------THSD-------AAREVLQKSGGKTVSEEEVLQLAQ-- 363 (405)
T ss_pred HHHHHHhCCEEEECCccccCcCHHHHHHHcCCCEEE-------eCCC-------ChHHhEeCCcEEEECCCCHHHHHh--
Confidence 89999999999999977 779999999999999998 7777 555544 235666654
Q ss_pred HHHhcCHHHHHH-HH---HHHHHHhhcCCCCChHHHHHHHHHHHHHH
Q 003891 670 LQLASDVTALAN-LR---MSLRDLMSKSPVCDGQNFALGLESTYRNM 712 (788)
Q Consensus 670 ~~l~~d~~~~~~-~r---~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ 712 (788)
+.+++.+.+ ++ +..|++.. ..|+.+.+++++++.|+++
T Consensus 364 ---~~~~~~~~~~~~~~~~~~r~~~~--~~fs~~~~~~~y~~lY~~l 405 (405)
T PRK10125 364 ---LSKPEIAQAVFGTTLAEFSQRSR--AAYSGQQMLEEYVNFYQNL 405 (405)
T ss_pred ---ccCHHHHHHhhhhHHHHHHHHHH--HhCCHHHHHHHHHHHHHhC
Confidence 245554443 22 33444443 3499999999999999863
No 195
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=99.05 E-value=5.7e-08 Score=99.01 Aligned_cols=178 Identities=12% Similarity=0.069 Sum_probs=131.9
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHH
Q 003891 25 IVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPA---YYNLGVVYSELMQYDTALGCYEKAALERPMY---AEAYCNM 98 (788)
Q Consensus 25 ~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~---~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~---~~~~~~l 98 (788)
..++..|......|++++|++.|++++...|....+ .+.+|.++++.+++++|+..+++.++..|++ +.+++.+
T Consensus 33 ~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~ 112 (243)
T PRK10866 33 SEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMR 112 (243)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHH
Confidence 347788999999999999999999999999987554 4999999999999999999999999998875 5688999
Q ss_pred HHHHHHCC---------------C---HHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHH
Q 003891 99 GVIYKNRG---------------D---LESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKAL 160 (788)
Q Consensus 99 a~~~~~~g---------------~---~~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al 160 (788)
|.++...+ + ..+|+..|++.++..|+..-.... ... +..++..+
T Consensus 113 g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A----~~r--------------l~~l~~~l 174 (243)
T PRK10866 113 GLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDA----TKR--------------LVFLKDRL 174 (243)
T ss_pred HHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHH----HHH--------------HHHHHHHH
Confidence 98865443 1 357889999999999987522110 000 01111111
Q ss_pred HhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 003891 161 YYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHC---AEACNNLGVIYKDRDNLDKAVECYQM 226 (788)
Q Consensus 161 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~eA~~~~~~ 226 (788)
..--+..|..|.+.|.|..|+.-++.+++..|+. .+++..++..|..+|..++|.+....
T Consensus 175 ------a~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~ 237 (243)
T PRK10866 175 ------AKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKI 237 (243)
T ss_pred ------HHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 1223456777777778888888888877776654 56777777888888888777766544
No 196
>cd03791 GT1_Glycogen_synthase_DULL1_like This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms.
Probab=99.02 E-value=4.4e-09 Score=119.77 Aligned_cols=168 Identities=16% Similarity=0.032 Sum_probs=119.3
Q ss_pred CCCeEEEecCCC--CcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHHH
Q 003891 524 NGFITFGSFNNL--AKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHM 601 (788)
Q Consensus 524 ~~~~~f~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~~~~l~~~~~~~gi~~~rv~~~~~~~~~~~~~ 601 (788)
++.++++.++|+ .|..+.+++++.++.+. +.+|+++|.| .+...+.+++...+. .++++|.+... .+...
T Consensus 294 ~~~~~i~~vGrl~~~Kg~~~li~a~~~l~~~--~~~lvi~G~g--~~~~~~~~~~~~~~~---~~~v~~~~~~~-~~~~~ 365 (476)
T cd03791 294 PDAPLFGFVGRLTEQKGIDLLLEALPELLEL--GGQLVILGSG--DPEYEEALRELAARY---PGRVAVLIGYD-EALAH 365 (476)
T ss_pred CCCCEEEEEeeccccccHHHHHHHHHHHHHc--CcEEEEEecC--CHHHHHHHHHHHHhC---CCcEEEEEeCC-HHHHH
Confidence 567788888877 89999999999988864 3899999876 334556666666555 47888776654 45555
Q ss_pred HhcccccEeecCCCC-CCchhHHHHhhhCCceeecCCCccCccchhHHHhhhCC------cccc--cCCHHHHHHHHHHH
Q 003891 602 QAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGL------KHLI--AKNEDEYVQLALQL 672 (788)
Q Consensus 602 ~~~~~~Dv~Ld~~~~-~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l~~~gl------~~~i--a~~~~~y~~~a~~l 672 (788)
..|+.+|++|-|+.+ +.|.+.+|||++|+|||+.....+..-+. -|- .+++ ..|.+++.+...++
T Consensus 366 ~~~~~aDv~l~pS~~E~~gl~~lEAma~G~pvI~~~~gg~~e~v~------~~~~~~~~~~G~~~~~~~~~~l~~~i~~~ 439 (476)
T cd03791 366 LIYAGADFFLMPSRFEPCGLTQMYAMRYGTVPIVRATGGLADTVI------DYNEDTGEGTGFVFEGYNADALLAALRRA 439 (476)
T ss_pred HHHHhCCEEECCCCCCCCcHHHHHHhhCCCCCEECcCCCccceEe------CCcCCCCCCCeEEeCCCCHHHHHHHHHHH
Confidence 788999999999977 66899999999999999733221111110 011 2333 24678888777766
Q ss_pred h---cCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHH
Q 003891 673 A---SDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYR 710 (788)
Q Consensus 673 ~---~d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~ 710 (788)
. .+++.+.+++++..+ ..|+++..++++++.|+
T Consensus 440 l~~~~~~~~~~~~~~~~~~-----~~fsw~~~a~~~~~~y~ 475 (476)
T cd03791 440 LALYRDPEAWRKLQRNAMA-----QDFSWDRSAKEYLELYR 475 (476)
T ss_pred HHHHcCHHHHHHHHHHHhc-----cCCChHHHHHHHHHHHh
Confidence 5 467666666665442 24999999999999986
No 197
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=99.02 E-value=2.7e-08 Score=94.09 Aligned_cols=198 Identities=17% Similarity=0.114 Sum_probs=135.7
Q ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 003891 22 CLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVI 101 (788)
Q Consensus 22 ~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~ 101 (788)
..|..++..|..|-..|-+.-|..-|.+++.+.|+-+++++.+|..+...|+|+.|.+.|...++++|.+..+..+.|..
T Consensus 63 eRA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~ 142 (297)
T COG4785 63 ERAQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIA 142 (297)
T ss_pred HHHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhcccee
Confidence 35677888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 003891 102 YKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEML 181 (788)
Q Consensus 102 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 181 (788)
++--|++.-|.+-+.+..+.+|+++--.. +.|.. ...-+..+|...+.+-.+...+....+...+ +..|
T Consensus 143 ~YY~gR~~LAq~d~~~fYQ~D~~DPfR~L---WLYl~-----E~k~dP~~A~tnL~qR~~~~d~e~WG~~iV~---~yLg 211 (297)
T COG4785 143 LYYGGRYKLAQDDLLAFYQDDPNDPFRSL---WLYLN-----EQKLDPKQAKTNLKQRAEKSDKEQWGWNIVE---FYLG 211 (297)
T ss_pred eeecCchHhhHHHHHHHHhcCCCChHHHH---HHHHH-----HhhCCHHHHHHHHHHHHHhccHhhhhHHHHH---HHHh
Confidence 99999999999999999999998873221 11211 1133666666554433322222222222211 1222
Q ss_pred ChHHHHHHHHHHHhcCCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 003891 182 KFDMAIVFYELAFHFNPHC-------AEACNNLGVIYKDRDNLDKAVECYQMALSIK 231 (788)
Q Consensus 182 ~~~~A~~~~~~al~~~p~~-------~~~~~~la~~~~~~g~~~eA~~~~~~al~~~ 231 (788)
+..+ ...++++.....++ .+.++.+|..+...|+.++|...|+-++..+
T Consensus 212 kiS~-e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiann 267 (297)
T COG4785 212 KISE-ETLMERLKADATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANN 267 (297)
T ss_pred hccH-HHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh
Confidence 2211 12223332222221 3566677777777777777777777766543
No 198
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=99.01 E-value=4.9e-08 Score=97.06 Aligned_cols=173 Identities=20% Similarity=0.217 Sum_probs=116.5
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHH
Q 003891 24 AIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHY---APAYYNLGVVYSELMQYDTALGCYEKAALERPMY---AEAYCN 97 (788)
Q Consensus 24 a~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~---~~~~~~ 97 (788)
+..++..|...+..|++.+|+..|++++...|.. ..+.+.+|.+++..|++++|+..+++.++..|++ ..+++.
T Consensus 5 ~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~ 84 (203)
T PF13525_consen 5 AEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYM 84 (203)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHH
Confidence 3458899999999999999999999999998774 6789999999999999999999999999998885 468888
Q ss_pred HHHHHHHC-----------CCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHhCCCC
Q 003891 98 MGVIYKNR-----------GDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHY 166 (788)
Q Consensus 98 la~~~~~~-----------g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 166 (788)
+|.++..+ +...+|+..|+..++..|++..+. +|...+..+-+ ..
T Consensus 85 ~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~---------------------~A~~~l~~l~~---~l 140 (203)
T PF13525_consen 85 LGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAE---------------------EAKKRLAELRN---RL 140 (203)
T ss_dssp HHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHH---------------------HHHHHHHHHHH---HH
T ss_pred HHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHH---------------------HHHHHHHHHHH---HH
Confidence 88887654 334689999999999999975221 11111111000 00
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCCHHHH
Q 003891 167 ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHC---AEACNNLGVIYKDRDNLDKA 220 (788)
Q Consensus 167 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~eA 220 (788)
..--+.+|..|.+.|.+..|+..++.+++..|+. .+++..++..|.++|..+.|
T Consensus 141 a~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a 197 (203)
T PF13525_consen 141 AEHELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAA 197 (203)
T ss_dssp HHHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHH
Confidence 1222345566666666666666666666666654 34555666666666665533
No 199
>PRK13608 diacylglycerol glucosyltransferase; Provisional
Probab=99.01 E-value=1.3e-08 Score=112.45 Aligned_cols=176 Identities=13% Similarity=0.122 Sum_probs=121.5
Q ss_pred CCCC-CCeEEEecCCC--CcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCc
Q 003891 521 ALTN-GFITFGSFNNL--AKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLN 597 (788)
Q Consensus 521 ~~~~-~~~~f~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~~~~l~~~~~~~gi~~~rv~~~~~~~~~ 597 (788)
+++. ..+++...++. .|....+++.+ ++..|+.++++++++ ....++.+.+.+ +.. ++|.|.|.+.
T Consensus 197 ~l~~~~~~ilv~~G~lg~~k~~~~li~~~---~~~~~~~~~vvv~G~--~~~l~~~l~~~~---~~~-~~v~~~G~~~-- 265 (391)
T PRK13608 197 NLDPDKQTILMSAGAFGVSKGFDTMITDI---LAKSANAQVVMICGK--SKELKRSLTAKF---KSN-ENVLILGYTK-- 265 (391)
T ss_pred CCCCCCCEEEEECCCcccchhHHHHHHHH---HhcCCCceEEEEcCC--CHHHHHHHHHHh---ccC-CCeEEEeccc--
Confidence 4443 34444444554 46666676654 344578888776543 123445555433 333 5899999863
Q ss_pred HHHHHhcccccEeecCCCCCCchhHHHHhhhCCceeecCCCccCccchhHHHhhhCCcccccCCHHHHHHHHHHHhcCHH
Q 003891 598 HDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIAKNEDEYVQLALQLASDVT 677 (788)
Q Consensus 598 ~~~~~~~~~~Dv~Ld~~~~~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l~~~gl~~~ia~~~~~y~~~a~~l~~d~~ 677 (788)
+...+|+.+|+++-. +||.|+.|||++|+|||+..-..-.....+-++...|.. ++..|.+++++...+|.+|++
T Consensus 266 -~~~~~~~~aDl~I~k---~gg~tl~EA~a~G~PvI~~~~~pgqe~~N~~~~~~~G~g-~~~~~~~~l~~~i~~ll~~~~ 340 (391)
T PRK13608 266 -HMNEWMASSQLMITK---PGGITISEGLARCIPMIFLNPAPGQELENALYFEEKGFG-KIADTPEEAIKIVASLTNGNE 340 (391)
T ss_pred -hHHHHHHhhhEEEeC---CchHHHHHHHHhCCCEEECCCCCCcchhHHHHHHhCCcE-EEeCCHHHHHHHHHHHhcCHH
Confidence 566677889999852 578899999999999999742111234555666777775 446799999999999999999
Q ss_pred HHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHH
Q 003891 678 ALANLRMSLRDLMSKSPVCDGQNFALGLESTYRNMWHR 715 (788)
Q Consensus 678 ~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~ 715 (788)
.+++|+++.++.. .-++....++.+++.+..+-+.
T Consensus 341 ~~~~m~~~~~~~~---~~~s~~~i~~~l~~l~~~~~~~ 375 (391)
T PRK13608 341 QLTNMISTMEQDK---IKYATQTICRDLLDLIGHSSQP 375 (391)
T ss_pred HHHHHHHHHHHhc---CCCCHHHHHHHHHHHhhhhhhh
Confidence 9999999998753 2378899999999887765553
No 200
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=99.00 E-value=1.8e-07 Score=109.20 Aligned_cols=224 Identities=16% Similarity=0.130 Sum_probs=195.5
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh-hCCCcHHHHHHHHHHHHHhhhhhhhcCCHHHH
Q 003891 74 YDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLA-VSPNFEIAKNNMAIALTDLGTKVKLEGDINQG 152 (788)
Q Consensus 74 ~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~-~~p~~~~~~~~la~~l~~lg~~~~~~g~~~~A 152 (788)
-.+..+-|++.+..+|+....|..+...+.+.++.++|.+..++|+. +++...+-..++..+|.++-..| |.-+.-
T Consensus 1440 ~pesaeDferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~y---G~eesl 1516 (1710)
T KOG1070|consen 1440 APESAEDFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAY---GTEESL 1516 (1710)
T ss_pred CCcCHHHHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhh---CcHHHH
Confidence 34456778888999999999999999999999999999999999997 45655555666666666665444 466677
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 003891 153 VAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKP 232 (788)
Q Consensus 153 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p 232 (788)
.+.|++|.+.. +-..++..|..+|...+++++|.++|+..++...+....|..++..++++++-++|...+++|++.-|
T Consensus 1517 ~kVFeRAcqyc-d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lP 1595 (1710)
T KOG1070|consen 1517 KKVFERACQYC-DAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLP 1595 (1710)
T ss_pred HHHHHHHHHhc-chHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcc
Confidence 78888888765 33457888999999999999999999999999888899999999999999999999999999999988
Q ss_pred C--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 003891 233 N--FSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPD 301 (788)
Q Consensus 233 ~--~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~ 301 (788)
. +.+.....|.+-++.|+.+.+...|+..+..+|...+.|.-+...-.+.|+.+.+...|++++.+.=.
T Consensus 1596 k~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~ 1666 (1710)
T KOG1070|consen 1596 KQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLS 1666 (1710)
T ss_pred hhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCC
Confidence 7 67788899999999999999999999999999999999999999999999999999999999877443
No 201
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=98.99 E-value=1.3e-06 Score=95.05 Aligned_cols=303 Identities=18% Similarity=0.166 Sum_probs=220.1
Q ss_pred HHHcCCCChhhHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHh-CCC-----CHHHHHHHHHHHHHcCCHHHHHHHHH
Q 003891 9 ALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKI-DPH-----YAPAYYNLGVVYSELMQYDTALGCYE 82 (788)
Q Consensus 9 aL~~~P~~~~a~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~-~p~-----~~~~~~~lg~~~~~~g~~~~A~~~~~ 82 (788)
+|+.+|.+.+-|.... -...|+..+-+..|.++++. +|. -...|..+|..|...|+.+.|...|+
T Consensus 341 lLRQn~~nV~eW~kRV---------~l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvife 411 (835)
T KOG2047|consen 341 LLRQNPHNVEEWHKRV---------KLYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFE 411 (835)
T ss_pred HHhcCCccHHHHHhhh---------hhhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHH
Confidence 4567777777654433 34568899999999999875 554 35689999999999999999999999
Q ss_pred HHHHhCCC----CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHH---------H---HHHHHHHHHHhhhhhhhc
Q 003891 83 KAALERPM----YAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEI---------A---KNNMAIALTDLGTKVKLE 146 (788)
Q Consensus 83 kal~~~p~----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~---------~---~~~la~~l~~lg~~~~~~ 146 (788)
++.+..-. .+.+|..-|..-....+++.|+++.++|... |..+. + ...-..++...+......
T Consensus 412 ka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~v-P~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~ 490 (835)
T KOG2047|consen 412 KATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHV-PTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESL 490 (835)
T ss_pred HhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcC-CCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHh
Confidence 99986533 3678999999999999999999999998765 22211 1 112234455556666677
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC--CCHHHHHHHHHH---HHHcCCHHHHH
Q 003891 147 GDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNP--HCAEACNNLGVI---YKDRDNLDKAV 221 (788)
Q Consensus 147 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~la~~---~~~~g~~~eA~ 221 (788)
|-++.....|++.+.+.--.+....+.|..+....-++++.+.|++.+.+.+ .-.++|+..-.- -+..-+.+.|.
T Consensus 491 gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraR 570 (835)
T KOG2047|consen 491 GTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERAR 570 (835)
T ss_pred ccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHH
Confidence 8999999999999999888999999999999999999999999999999854 445555543322 33345789999
Q ss_pred HHHHHHHhhCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-----HcCCHHHHHHHHHH
Q 003891 222 ECYQMALSIKPNFS--QSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYR-----DAGSISLAIDAYEQ 294 (788)
Q Consensus 222 ~~~~~al~~~p~~~--~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~-----~~g~~~eA~~~~~~ 294 (788)
.+|++|++..|... .++...+..-.+-|-...|++.|+++-..-+.. -.+.+-.+|. ..| ...-...|++
T Consensus 571 dLFEqaL~~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~~a--~~l~myni~I~kaae~yG-v~~TR~iYek 647 (835)
T KOG2047|consen 571 DLFEQALDGCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVKEA--QRLDMYNIYIKKAAEIYG-VPRTREIYEK 647 (835)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCHH--HHHHHHHHHHHHHHHHhC-CcccHHHHHH
Confidence 99999999988432 256667777778899999999999986653321 1222222222 222 3345788999
Q ss_pred HHhhCCCChhhHHhHHHHhhhccCCCchHH
Q 003891 295 CLKIDPDSRNAGQNRLLAMNYINEGHDDKL 324 (788)
Q Consensus 295 al~l~p~~~~a~~~~lla~~~l~~g~~~~~ 324 (788)
|++.-|+...-...+-++..-...|+-+.+
T Consensus 648 aIe~Lp~~~~r~mclrFAdlEtklGEidRA 677 (835)
T KOG2047|consen 648 AIESLPDSKAREMCLRFADLETKLGEIDRA 677 (835)
T ss_pred HHHhCChHHHHHHHHHHHHHhhhhhhHHHH
Confidence 999988876554444444443344544443
No 202
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=98.97 E-value=9.7e-08 Score=96.82 Aligned_cols=299 Identities=17% Similarity=0.181 Sum_probs=214.4
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CC--CCHHHHHH
Q 003891 27 LTDLGTSLKLAGNTQDGIQKYYEALKIDPHY---APAYYNLGVVYSELMQYDTALGCYEKAALE----RP--MYAEAYCN 97 (788)
Q Consensus 27 l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~kal~~----~p--~~~~~~~~ 97 (788)
....|..++...++++|+..+.+.+..-.+. ...+-.+..+...+|.|++++.+--..+.. +. ...+++.+
T Consensus 9 q~~~g~~Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~ln 88 (518)
T KOG1941|consen 9 QIEKGLQLYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLN 88 (518)
T ss_pred HHHHHHhHhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566788889999999999999988765443 234445567778888888887765544432 11 13568899
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHhCCCCH------HHHH
Q 003891 98 MGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYA------DAMY 171 (788)
Q Consensus 98 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~------~~~~ 171 (788)
++..+....++.+++.+-+..+.+-...+. ..-+.....++..+.-.+.++++++.|++++++..++. .++.
T Consensus 89 lar~~e~l~~f~kt~~y~k~~l~lpgt~~~--~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv 166 (518)
T KOG1941|consen 89 LARSNEKLCEFHKTISYCKTCLGLPGTRAG--QLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCV 166 (518)
T ss_pred HHHHHHHHHHhhhHHHHHHHHhcCCCCCcc--cccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhh
Confidence 999999999999999999888876433221 00123344456666667799999999999998865443 3678
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhcCCC----C------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC------CCCH
Q 003891 172 NLGVAYGEMLKFDMAIVFYELAFHFNPH----C------AEACNNLGVIYKDRDNLDKAVECYQMALSIK------PNFS 235 (788)
Q Consensus 172 ~la~~~~~~g~~~~A~~~~~~al~~~p~----~------~~~~~~la~~~~~~g~~~eA~~~~~~al~~~------p~~~ 235 (788)
.+|.++....++++|..+..++.++... + ..+++.++..+..+|+..+|.++.+++.++. +-..
T Consensus 167 ~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~a 246 (518)
T KOG1941|consen 167 SLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQA 246 (518)
T ss_pred hHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHH
Confidence 8999999999999999999999886322 1 3467888999999999999999999998763 2234
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCCHHH-----HHHHHHHHHhhCCC---
Q 003891 236 QSLNNLGVVYTVQGKMDAAAEMIEKAIAANPT------YAEAYNNLGVLYRDAGSISL-----AIDAYEQCLKIDPD--- 301 (788)
Q Consensus 236 ~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~------~~~~~~~la~~~~~~g~~~e-----A~~~~~~al~l~p~--- 301 (788)
.....+|.+|...|+.+.|..-|++|...... ..++....++++....-..+ |++.-++++++...
T Consensus 247 rc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~~gdrmgqv~al~g~Akc~~~~r~~~k~~~Crale~n~r~levA~~IG~ 326 (518)
T KOG1941|consen 247 RCLLCFADIYRSRGDLERAFRRYEQAMGTMASLGDRMGQVEALDGAAKCLETLRLQNKICNCRALEFNTRLLEVASSIGA 326 (518)
T ss_pred HHHHHHHHHHHhcccHhHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHhhh
Confidence 56778999999999999999999999876322 13456666666655443333 88888888776443
Q ss_pred -ChhhHHhHHHHhhhccCCCchHHHHH
Q 003891 302 -SRNAGQNRLLAMNYINEGHDDKLFEA 327 (788)
Q Consensus 302 -~~~a~~~~lla~~~l~~g~~~~~~~~ 327 (788)
.........++..|-..|..++.-+.
T Consensus 327 K~~vlK~hcrla~iYrs~gl~d~~~~h 353 (518)
T KOG1941|consen 327 KLSVLKLHCRLASIYRSKGLQDELRAH 353 (518)
T ss_pred hHHHHHHHHHHHHHHHhccchhHHHHH
Confidence 22223334566777666665554433
No 203
>cd03788 GT1_TPS Trehalose-6-Phosphate Synthase (TPS) is a glycosyltransferase that catalyses the synthesis of alpha,alpha-1,1-trehalose-6-phosphate from glucose-6-phosphate using a UDP-glucose donor. It is a key enzyme in the trehalose synthesis pathway. Trehalose is a nonreducing disaccharide present in a wide variety of organisms and may serve as a source of energy and carbon. It is characterized most notably in insect, plant, and microbial cells. Its production is often associated with a variety of stress conditions, including desiccation, dehydration, heat, cold, and oxidation. This family represents the catalytic domain of the TPS. Some members of this domain family coexist with a C-terminal trehalose phosphatase domain.
Probab=98.97 E-value=7.7e-09 Score=116.16 Aligned_cols=172 Identities=16% Similarity=0.076 Sum_probs=120.6
Q ss_pred CCCeEEEecCCC--CcCCHHHHHHHHHHHhHcCC----cEEEEecCCC-CCHHHHHHHHHHHH----HcCCC-----CCc
Q 003891 524 NGFITFGSFNNL--AKITPKVLQVWARILCAVPN----SRLVVKCKPF-CCDSVRHRFLSTLE----QLGLE-----SLR 587 (788)
Q Consensus 524 ~~~~~f~~~~~~--~K~~~~~~~~~~~il~~~p~----~~l~l~~~~~-~~~~~~~~l~~~~~----~~gi~-----~~r 587 (788)
.+..++++++|+ .|..+..++++.++++..|+ .+|+++|.+. ++.+....+++.++ +.+.. -..
T Consensus 262 ~~~~~il~vgRl~~~Kgi~~ll~A~~~ll~~~p~~~~~v~Lv~vg~~~~g~~~~~~~l~~~l~~~v~~in~~~g~~~~~~ 341 (460)
T cd03788 262 GGRKLIVGVDRLDYSKGIPERLLAFERLLERYPEWRGKVVLVQIAVPSRTDVPEYQELRREVEELVGRINGKFGTLDWTP 341 (460)
T ss_pred CCCEEEEEecCccccCCHHHHHHHHHHHHHhChhhcCCEEEEEEccCCCcCcHHHHHHHHHHHHHHHHHHhccCCCCcee
Confidence 455678888887 89999999999999999997 5688876543 22233333433333 32221 123
Q ss_pred EEEc-CCcCCcHHHHHhcccccEeecCCCC-CCchhHHHHhhhCCc----eeecCCCccCccchhHHHhhhCCccccc--
Q 003891 588 VDLL-PLILLNHDHMQAYSLMDISLDTFPY-AGTTTTCESLYMGVP----CVTMAGSVHAHNVGVSLLTKVGLKHLIA-- 659 (788)
Q Consensus 588 v~~~-~~~~~~~~~~~~~~~~Dv~Ld~~~~-~g~~t~~eal~~GvP----vvt~~g~~~~~r~~~~~l~~~gl~~~ia-- 659 (788)
|++. +.++ .++...+|+.+|||+-|+.. +-+.+++|||++|+| ||+ ++.+++.-. |...++.
T Consensus 342 v~~~~g~v~-~~el~~~y~~aDv~v~pS~~Eg~~lv~lEAma~g~p~~g~vV~-------S~~~G~~~~--~~~g~lv~p 411 (460)
T cd03788 342 VRYLYRSLP-REELAALYRAADVALVTPLRDGMNLVAKEYVACQDDDPGVLIL-------SEFAGAAEE--LSGALLVNP 411 (460)
T ss_pred EEEEeCCCC-HHHHHHHHHhccEEEeCccccccCcccceeEEEecCCCceEEE-------eccccchhh--cCCCEEECC
Confidence 5554 5555 78999999999999999987 559999999999999 654 443321111 3344543
Q ss_pred CCHHHHHHHHHHHhcCH-HHHHHHHHHHHHHhhcCCCCChHHHHHHHHHH
Q 003891 660 KNEDEYVQLALQLASDV-TALANLRMSLRDLMSKSPVCDGQNFALGLEST 708 (788)
Q Consensus 660 ~~~~~y~~~a~~l~~d~-~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~ 708 (788)
.|.+++++...++.+++ +.++.+.++.++.+. -||...++.++...
T Consensus 412 ~d~~~la~ai~~~l~~~~~e~~~~~~~~~~~v~---~~~~~~w~~~~l~~ 458 (460)
T cd03788 412 YDIDEVADAIHRALTMPLEERRERHRKLREYVR---THDVQAWANSFLDD 458 (460)
T ss_pred CCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH---hCCHHHHHHHHHHh
Confidence 58999999999988855 677777777777764 37999998887643
No 204
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=98.97 E-value=2.1e-06 Score=85.98 Aligned_cols=223 Identities=30% Similarity=0.406 Sum_probs=129.9
Q ss_pred CCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--hCCCcHHHHHHHHHHHHHhhhhhhhcC
Q 003891 72 MQYDTALGCYEKAALERPM--YAEAYCNMGVIYKNRGDLESAIACYERCLA--VSPNFEIAKNNMAIALTDLGTKVKLEG 147 (788)
Q Consensus 72 g~~~~A~~~~~kal~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~la~~l~~lg~~~~~~g 147 (788)
+.+..+...+...+...+. ........+..+...+++..+...+...+. ..+... ..+...+..+...+
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~ 109 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLA-------EALLNLGLLLEALG 109 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchH-------HHHHHHHHHHHHHh
Confidence 3444444444444444443 244555555555555555555555555554 222222 22222333333334
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHH-HHHHcCChHHHHHHHHHHHhcCC---CCHHHHHHHHHHHHHcCCHHHHHHH
Q 003891 148 DINQGVAYYKKALYYNWHYADAMYNLGV-AYGEMLKFDMAIVFYELAFHFNP---HCAEACNNLGVIYKDRDNLDKAVEC 223 (788)
Q Consensus 148 ~~~~A~~~~~~al~~~p~~~~~~~~la~-~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~~la~~~~~~g~~~eA~~~ 223 (788)
++.++++.+.+++...+.........+. ++...|++++|...+++++...| .........+..+...+++++|+..
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 189 (291)
T COG0457 110 KYEEALELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALEL 189 (291)
T ss_pred hHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHH
Confidence 4555555555555554444333333333 56666666666666666665544 2344555555556666777777777
Q ss_pred HHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 003891 224 YQMALSIKPN-FSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPD 301 (788)
Q Consensus 224 ~~~al~~~p~-~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~ 301 (788)
+.+++...+. ....+..++..+...+++++|+..+.+++...|.....+..++..+...++++++...+.++++..|.
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 190 LEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred HHHHHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 7777777666 56677777777777777777777777777777766666666666666666677777777777777776
No 205
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.96 E-value=1.6e-08 Score=91.08 Aligned_cols=105 Identities=24% Similarity=0.303 Sum_probs=80.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHH
Q 003891 202 EACNNLGVIYKDRDNLDKAVECYQMALSIKPNF---SQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTY---AEAYNNL 275 (788)
Q Consensus 202 ~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~---~~~~~~l 275 (788)
..++.+|..+...|++++|++.|+++++.+|++ ..+++.+|.++...|++++|+.++++++...|++ +.+++.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 456777777777888888888888887777665 4577778888888888888888888888777664 5677888
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCChhhH
Q 003891 276 GVLYRDAGSISLAIDAYEQCLKIDPDSRNAG 306 (788)
Q Consensus 276 a~~~~~~g~~~eA~~~~~~al~l~p~~~~a~ 306 (788)
|.++.++|++++|..+++++++..|++..+.
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 113 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVIKRYPGSSAAK 113 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHHHHCcCChhHH
Confidence 8888888888888888888888888766543
No 206
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.96 E-value=1.1e-07 Score=96.90 Aligned_cols=189 Identities=12% Similarity=0.029 Sum_probs=141.6
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH---HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHH---H
Q 003891 56 HYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEA---YCNMGVIYKNRGDLESAIACYERCLAVSPNFEIA---K 129 (788)
Q Consensus 56 ~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~~---~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~---~ 129 (788)
..+..++..|..++..|+|++|+..|++++...|....+ .+.+|.+|.+.+++++|+..+++.++..|+++.. .
T Consensus 30 ~~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~ 109 (243)
T PRK10866 30 NPPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVL 109 (243)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHH
Confidence 467788999999999999999999999999999987654 4899999999999999999999999999988643 3
Q ss_pred HHHHHHHHHhhhh-----------hhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC
Q 003891 130 NNMAIALTDLGTK-----------VKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNP 198 (788)
Q Consensus 130 ~~la~~l~~lg~~-----------~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 198 (788)
+.++.++..++.. ...+....+|+..|++.++..|+...+- +|...+..+ ..
T Consensus 110 Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~--------------~A~~rl~~l---~~ 172 (243)
T PRK10866 110 YMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTT--------------DATKRLVFL---KD 172 (243)
T ss_pred HHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHH--------------HHHHHHHHH---HH
Confidence 3333333222211 0111224578889999999999875321 111111111 00
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003891 199 HCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNF---SQSLNNLGVVYTVQGKMDAAAEMIEKA 261 (788)
Q Consensus 199 ~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~eA~~~l~ka 261 (788)
.-..--+.+|..|.+.|.|..|+.-++.+++..|+. .+++..++..|...|..++|.+.....
T Consensus 173 ~la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l 238 (243)
T PRK10866 173 RLAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKII 238 (243)
T ss_pred HHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 112334578899999999999999999999998876 568999999999999999998877654
No 207
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=98.96 E-value=1.3e-06 Score=87.40 Aligned_cols=225 Identities=30% Similarity=0.460 Sum_probs=195.7
Q ss_pred cCChHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHH
Q 003891 37 AGNTQDGIQKYYEALKIDPH--YAPAYYNLGVVYSELMQYDTALGCYEKAAL--ERPMYAEAYCNMGVIYKNRGDLESAI 112 (788)
Q Consensus 37 ~g~~~~A~~~~~~al~~~p~--~~~~~~~lg~~~~~~g~~~~A~~~~~kal~--~~p~~~~~~~~la~~~~~~g~~~~A~ 112 (788)
.+.+..+...+...+...+. ........+..+...+++..+...+..... ..+.....+...+..+...+++.+++
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (291)
T COG0457 36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEAL 115 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHH
Confidence 46778888888888888876 478889999999999999999999999997 68888999999999999999999999
Q ss_pred HHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHcCChHHHHHH
Q 003891 113 ACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNW---HYADAMYNLGVAYGEMLKFDMAIVF 189 (788)
Q Consensus 113 ~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~~la~~~~~~g~~~~A~~~ 189 (788)
+.+.+++...+........... + ++...+++++|...+.+++...+ .........+..+...+++++|+..
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~-----~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 189 (291)
T COG0457 116 ELLEKALALDPDPDLAEALLAL-----G-ALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALEL 189 (291)
T ss_pred HHHHHHHcCCCCcchHHHHHHH-----H-HHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHH
Confidence 9999999988776322222222 1 56667899999999999988776 3556677777778899999999999
Q ss_pred HHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 003891 190 YELAFHFNPH-CAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPT 267 (788)
Q Consensus 190 ~~~al~~~p~-~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~ 267 (788)
+.+++...+. ....+..++..+...+++++|+..+.+++...|.....+..++..+...++++++...+.+++...|.
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 190 LEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred HHHHHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 9999999999 79999999999999999999999999999999997788888888888888899999999999999987
No 208
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.96 E-value=2e-08 Score=96.88 Aligned_cols=122 Identities=22% Similarity=0.223 Sum_probs=101.4
Q ss_pred cCChHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHCCCHHHH
Q 003891 37 AGNTQDGIQKYYEALKIDPHY--APAYYNLGVVYSELMQYDTALGCYEKAALERPM---YAEAYCNMGVIYKNRGDLESA 111 (788)
Q Consensus 37 ~g~~~~A~~~~~~al~~~p~~--~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~---~~~~~~~la~~~~~~g~~~~A 111 (788)
.+.+..+...+...++.++.. ...++.+|.++..+|++++|+..|++++.+.|+ .+.++.++|.++...|++++|
T Consensus 12 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA 91 (168)
T CHL00033 12 DKTFTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKA 91 (168)
T ss_pred ccccccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHH
Confidence 345666777776665555554 677899999999999999999999999988765 346899999999999999999
Q ss_pred HHHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHH
Q 003891 112 IACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKK 158 (788)
Q Consensus 112 ~~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~ 158 (788)
+.++++++++.|.....+.+++.++..+|..+...|++++|+..+++
T Consensus 92 ~~~~~~Al~~~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~ 138 (168)
T CHL00033 92 LEYYFQALERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQ 138 (168)
T ss_pred HHHHHHHHHhCcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHH
Confidence 99999999999999999999999999888888888887755544443
No 209
>TIGR02400 trehalose_OtsA alpha,alpha-trehalose-phosphate synthase [UDP-forming]. This enzyme catalyzes the key, penultimate step in biosynthesis of trehalose, a compatible solute made as an osmoprotectant in some species in all three domains of life. The gene symbol OtsA stands for osmotically regulated trehalose synthesis A. Trehalose helps protect against both osmotic and thermal stresses, and is made from two glucose subunits. This model excludes glucosylglycerol-phosphate synthase, an enzyme of an analogous osmoprotectant system in many cyanobacterial strains. This model does not identify archaeal examples, as they are more divergent than glucosylglycerol-phosphate synthase. Sequences that score in the gray zone between the trusted and noise cutoffs include a number of yeast multidomain proteins in which the N-terminal domain may be functionally equivalent to this family. The gray zone also includes the OtsA of Cornyebacterium glutamicum (and related species), shown to be responsib
Probab=98.93 E-value=3.4e-08 Score=110.12 Aligned_cols=173 Identities=17% Similarity=0.127 Sum_probs=122.6
Q ss_pred CCeEEEecCCC--CcCCHHHHHHHHHHHhHcCC----cEEEEecCCC-CCHHHHHHHHHHHHHc--------CC-CCCcE
Q 003891 525 GFITFGSFNNL--AKITPKVLQVWARILCAVPN----SRLVVKCKPF-CCDSVRHRFLSTLEQL--------GL-ESLRV 588 (788)
Q Consensus 525 ~~~~f~~~~~~--~K~~~~~~~~~~~il~~~p~----~~l~l~~~~~-~~~~~~~~l~~~~~~~--------gi-~~~rv 588 (788)
+..+++++.|+ .|..+..++++.++++..|+ .+|++++.+. .+.+....+++.+++. |- +-.-+
T Consensus 258 ~~~vIl~VgRLd~~KGi~~ll~A~~~ll~~~p~~~~~v~Lv~v~~p~rg~~~~~~~l~~~i~~lv~~in~~~~~~~~~pv 337 (456)
T TIGR02400 258 GRKLIIGVDRLDYSKGLPERLLAFERFLEEHPEWRGKVVLVQIAVPSRGDVPEYQQLRRQVEELVGRINGRFGTLDWTPI 337 (456)
T ss_pred CCeEEEEccccccccCHHHHHHHHHHHHHhCccccCceEEEEEecCCccCchHHHHHHHHHHHHHHHHHhccCCCCCccE
Confidence 45678898987 89999999999999999997 4577776443 2224455566666554 21 10114
Q ss_pred EEcCCcCCcHHHHHhcccccEeecCCCC-CCchhHHHHhhhCCc----eeecCCCccCccchhHHHhhhCCcccc--cCC
Q 003891 589 DLLPLILLNHDHMQAYSLMDISLDTFPY-AGTTTTCESLYMGVP----CVTMAGSVHAHNVGVSLLTKVGLKHLI--AKN 661 (788)
Q Consensus 589 ~~~~~~~~~~~~~~~~~~~Dv~Ld~~~~-~g~~t~~eal~~GvP----vvt~~g~~~~~r~~~~~l~~~gl~~~i--a~~ 661 (788)
++++...+.++..+.|+.+||||-|+-+ +-+.+++|||+||+| ||. |+.+++ ...++ ..++ ..|
T Consensus 338 ~~l~~~~~~~el~aly~aaDv~vv~S~~EG~~Lv~lEamA~g~P~~g~vVl-------S~~~G~-~~~l~-~gllVnP~d 408 (456)
T TIGR02400 338 RYLNRSYDREELMALYRAADVGLVTPLRDGMNLVAKEYVAAQDPKDGVLIL-------SEFAGA-AQELN-GALLVNPYD 408 (456)
T ss_pred EEEcCCCCHHHHHHHHHhCcEEEECccccccCccHHHHHHhcCCCCceEEE-------eCCCCC-hHHhC-CcEEECCCC
Confidence 4544333378999999999999999988 559999999999999 665 444321 11122 3333 368
Q ss_pred HHHHHHHHHHHhc-CHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHH
Q 003891 662 EDEYVQLALQLAS-DVTALANLRMSLRDLMSKSPVCDGQNFALGLESTY 709 (788)
Q Consensus 662 ~~~y~~~a~~l~~-d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~ 709 (788)
.++..+...++.+ +++.++++.+++++++.+ +|...+++.+.+.+
T Consensus 409 ~~~lA~aI~~aL~~~~~er~~r~~~~~~~v~~---~~~~~W~~~~l~~l 454 (456)
T TIGR02400 409 IDGMADAIARALTMPLEEREERHRAMMDKLRK---NDVQRWREDFLSDL 454 (456)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhh---CCHHHHHHHHHHHh
Confidence 8999888888776 667888888888888654 79999998877654
No 210
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=98.92 E-value=1.2e-07 Score=94.26 Aligned_cols=183 Identities=20% Similarity=0.190 Sum_probs=131.1
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHH---HHH
Q 003891 57 YAPAYYNLGVVYSELMQYDTALGCYEKAALERPMY---AEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEI---AKN 130 (788)
Q Consensus 57 ~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~---~~~ 130 (788)
.+..++..|..++..|+|.+|+..|++++...|.. ..+.+.+|.++...|++++|+..+++.++..|+++. +.+
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y 83 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALY 83 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHH
Confidence 46788999999999999999999999999988764 678999999999999999999999999999998763 444
Q ss_pred HHHHHHHHhhhh----hhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHH
Q 003891 131 NMAIALTDLGTK----VKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNN 206 (788)
Q Consensus 131 ~la~~l~~lg~~----~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 206 (788)
.++.++..+..- ....+...+|+..|+..++..|++..+- +|...+..+-. ....--+.
T Consensus 84 ~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~--------------~A~~~l~~l~~---~la~~e~~ 146 (203)
T PF13525_consen 84 MLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAE--------------EAKKRLAELRN---RLAEHELY 146 (203)
T ss_dssp HHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHH--------------HHHHHHHHHHH---HHHHHHHH
T ss_pred HHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHH--------------HHHHHHHHHHH---HHHHHHHH
Confidence 455554444322 3344556788888888888888765321 11111111100 01234456
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCH---HHHHHHHHHHHHcCCHHHHHH
Q 003891 207 LGVIYKDRDNLDKAVECYQMALSIKPNFS---QSLNNLGVVYTVQGKMDAAAE 256 (788)
Q Consensus 207 la~~~~~~g~~~eA~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~eA~~ 256 (788)
+|..|.+.|.+..|+..++.+++..|+.. +++..++.+|.++|..+.|..
T Consensus 147 ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~~ 199 (203)
T PF13525_consen 147 IARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAADT 199 (203)
T ss_dssp HHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHHH
Confidence 89999999999999999999999999885 478899999999999985543
No 211
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.92 E-value=7e-08 Score=93.43 Aligned_cols=87 Identities=30% Similarity=0.465 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 003891 26 VLTDLGTSLKLAGNTQDGIQKYYEALKIDPHY---APAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIY 102 (788)
Q Consensus 26 ~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~ 102 (788)
.++.+|..+...|++++|+.+|+++++..|+. ..++..+|.++...|++++|+..++++++..|.+...+..+|.++
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 116 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIY 116 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 34444444445555555555555554443321 234444455555555555555555555544444444444444444
Q ss_pred HHCCCHHHHH
Q 003891 103 KNRGDLESAI 112 (788)
Q Consensus 103 ~~~g~~~~A~ 112 (788)
...|+...+.
T Consensus 117 ~~~g~~~~a~ 126 (172)
T PRK02603 117 HKRGEKAEEA 126 (172)
T ss_pred HHcCChHhHh
Confidence 4444444333
No 212
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.91 E-value=3e-08 Score=89.29 Aligned_cols=103 Identities=24% Similarity=0.281 Sum_probs=95.6
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHH
Q 003891 25 IVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHY---APAYYNLGVVYSELMQYDTALGCYEKAALERPMY---AEAYCNM 98 (788)
Q Consensus 25 ~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~---~~~~~~l 98 (788)
.+++.+|..+...|++++|++.|.++++.+|++ ..+++.+|.++...|++++|+..|++++...|++ ..++..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 357889999999999999999999999998876 5789999999999999999999999999998875 6789999
Q ss_pred HHHHHHCCCHHHHHHHHHHHHhhCCCcHH
Q 003891 99 GVIYKNRGDLESAIACYERCLAVSPNFEI 127 (788)
Q Consensus 99 a~~~~~~g~~~~A~~~~~~al~~~p~~~~ 127 (788)
|.++...|++++|+.+++++++..|++..
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 111 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVIKRYPGSSA 111 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHHHHCcCChh
Confidence 99999999999999999999999999764
No 213
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.91 E-value=1.9e-08 Score=85.56 Aligned_cols=98 Identities=39% Similarity=0.622 Sum_probs=74.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 003891 203 ACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDA 282 (788)
Q Consensus 203 ~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~ 282 (788)
+++.+|.++...|++++|+..++++++..|.+..++..+|.++...+++++|++.+++++...|.+..++..++.++...
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence 45667777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred CCHHHHHHHHHHHHhhCC
Q 003891 283 GSISLAIDAYEQCLKIDP 300 (788)
Q Consensus 283 g~~~eA~~~~~~al~l~p 300 (788)
|++++|...++++++..|
T Consensus 82 ~~~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 82 GKYEEALEAYEKALELDP 99 (100)
T ss_pred HhHHHHHHHHHHHHccCC
Confidence 777778777777777665
No 214
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.90 E-value=1.8e-07 Score=98.20 Aligned_cols=141 Identities=24% Similarity=0.350 Sum_probs=78.2
Q ss_pred ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--C----CHHHHHHHHHHHHHCCCHHHHH
Q 003891 39 NTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERP--M----YAEAYCNMGVIYKNRGDLESAI 112 (788)
Q Consensus 39 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p--~----~~~~~~~la~~~~~~g~~~~A~ 112 (788)
++++|...|.++ |.+|...+++++|.++|.++....- + -...+...+.+|.+. ++++|+
T Consensus 30 ~~e~Aa~~y~~A--------------a~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai 94 (282)
T PF14938_consen 30 DYEEAADLYEKA--------------ANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAI 94 (282)
T ss_dssp HHHHHHHHHHHH--------------HHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHH
T ss_pred CHHHHHHHHHHH--------------HHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHH
Confidence 555665555554 4555566666666666666644311 1 134555666776666 888999
Q ss_pred HHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhc-CCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCChHH
Q 003891 113 ACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLE-GDINQGVAYYKKALYYNWHY------ADAMYNLGVAYGEMLKFDM 185 (788)
Q Consensus 113 ~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~-g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~ 185 (788)
.+|++++++.-... .....+.++..+|.+|... +++++|+++|+++++..... ...+..+|.++...|+|++
T Consensus 95 ~~~~~A~~~y~~~G-~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~ 173 (282)
T PF14938_consen 95 ECYEKAIEIYREAG-RFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEE 173 (282)
T ss_dssp HHHHHHHHHHHHCT--HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHH
T ss_pred HHHHHHHHHHHhcC-cHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHH
Confidence 99999887643222 1223356667777777776 77777777777776542111 1233444455555555555
Q ss_pred HHHHHHHHHh
Q 003891 186 AIVFYELAFH 195 (788)
Q Consensus 186 A~~~~~~al~ 195 (788)
|++.|++...
T Consensus 174 A~~~~e~~~~ 183 (282)
T PF14938_consen 174 AIEIYEEVAK 183 (282)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5555554443
No 215
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=98.90 E-value=2.4e-08 Score=109.21 Aligned_cols=260 Identities=17% Similarity=0.149 Sum_probs=147.6
Q ss_pred HHHHHHHhCCCcEEEeCCCCCCCCcccccccCCCCeEEecccCCCCCC------CCCccEEEecCCCCCcCccCCCccce
Q 003891 424 KVAAMVREDKIDILVELTGHTANNKLGMMACQPAPVQVTWIGYPNTTG------LPTIDYRITDSLADPPETKQKHVEEL 497 (788)
Q Consensus 424 ~~a~~i~~d~idilvdl~g~t~~~~~~~~a~r~Apvq~~~~g~~~ttg------~~~~Dy~i~d~~~~p~~~~~~~~e~l 497 (788)
.+.+.|++.++||++--+.++ +-...++.|-..+-+.+..+..-.+ ....|.+++.. |.........++
T Consensus 82 ~~~~~ik~~~pDvv~~~~~~~--~~~~~~~~~~~~~p~v~~~~~~~~~~~~r~~~~~~d~ii~~~---~~~~~~~~~~~i 156 (357)
T PRK00726 82 QARKILKRFKPDVVVGFGGYV--SGPGGLAARLLGIPLVIHEQNAVPGLANKLLARFAKKVATAF---PGAFPEFFKPKA 156 (357)
T ss_pred HHHHHHHhcCCCEEEECCCcc--hhHHHHHHHHcCCCEEEEcCCCCccHHHHHHHHHhchheECc---hhhhhccCCCCE
Confidence 466778899999998655443 2223333333333222222211111 12334444321 111001223456
Q ss_pred EEcCCCccccCCCCCCCCCCCCCCCCCCCeEEEecCCC--CcCCHHHH-HHHHHHHhHcCCcEEEEecCCCCCHHHHHHH
Q 003891 498 IRLPECFLCYTPSPEAGPVCPTPALTNGFITFGSFNNL--AKITPKVL-QVWARILCAVPNSRLVVKCKPFCCDSVRHRF 574 (788)
Q Consensus 498 ~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~--~K~~~~~~-~~~~~il~~~p~~~l~l~~~~~~~~~~~~~l 574 (788)
..+|+..-. ... .........+++.+..+++.+++. .|....++ +++.++... | -++++.|.+ . .+.+
T Consensus 157 ~vi~n~v~~-~~~-~~~~~~~~~~~~~~~~~i~~~gg~~~~~~~~~~l~~a~~~~~~~-~-~~~~~~G~g----~-~~~~ 227 (357)
T PRK00726 157 VVTGNPVRE-EIL-ALAAPPARLAGREGKPTLLVVGGSQGARVLNEAVPEALALLPEA-L-QVIHQTGKG----D-LEEV 227 (357)
T ss_pred EEECCCCCh-Hhh-cccchhhhccCCCCCeEEEEECCcHhHHHHHHHHHHHHHHhhhC-c-EEEEEcCCC----c-HHHH
Confidence 666653211 000 000111122344455556666654 34333444 776666543 4 456667766 2 2455
Q ss_pred HHHHHHcCCCCCcEEEcCCcCCcHHHHHhcccccEeecCCCCCCchhHHHHhhhCCceeecCCCccC---ccchhHHHhh
Q 003891 575 LSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHA---HNVGVSLLTK 651 (788)
Q Consensus 575 ~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~~Dv~Ld~~~~~g~~t~~eal~~GvPvvt~~g~~~~---~r~~~~~l~~ 651 (788)
.+..+ .|+. |.|.+.+ +++...+..+|+++-+ +|+.|++|||++|+|||+.+..... ....+.++..
T Consensus 228 ~~~~~-~~~~---v~~~g~~---~~~~~~~~~~d~~i~~---~g~~~~~Ea~~~g~Pvv~~~~~~~~~~~~~~~~~~i~~ 297 (357)
T PRK00726 228 RAAYA-AGIN---AEVVPFI---DDMAAAYAAADLVICR---AGASTVAELAAAGLPAILVPLPHAADDHQTANARALVD 297 (357)
T ss_pred HHHhh-cCCc---EEEeehH---hhHHHHHHhCCEEEEC---CCHHHHHHHHHhCCCEEEecCCCCCcCcHHHHHHHHHH
Confidence 55555 7774 8898885 4667778889999953 3678999999999999997642111 1122445666
Q ss_pred hCCccccc-CC--HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHH
Q 003891 652 VGLKHLIA-KN--EDEYVQLALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYR 710 (788)
Q Consensus 652 ~gl~~~ia-~~--~~~y~~~a~~l~~d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~ 710 (788)
.|..-++. .| ++++.+...++.+|++.++.|++..++.. .-++..+.++.+++..+
T Consensus 298 ~~~g~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~ 356 (357)
T PRK00726 298 AGAALLIPQSDLTPEKLAEKLLELLSDPERLEAMAEAARALG---KPDAAERLADLIEELAR 356 (357)
T ss_pred CCCEEEEEcccCCHHHHHHHHHHHHcCHHHHHHHHHHHHhcC---CcCHHHHHHHHHHHHhh
Confidence 67654443 34 89999999999999999999999987653 33577777777766543
No 216
>PF13692 Glyco_trans_1_4: Glycosyl transferases group 1; PDB: 3OY2_A 3OY7_B 2Q6V_A 2HY7_A 3CV3_A 3CUY_A.
Probab=98.89 E-value=2.8e-09 Score=98.71 Aligned_cols=129 Identities=13% Similarity=0.203 Sum_probs=87.3
Q ss_pred CeEEEecCCC--CcCCHHHHH-HHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHHHH
Q 003891 526 FITFGSFNNL--AKITPKVLQ-VWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQ 602 (788)
Q Consensus 526 ~~~f~~~~~~--~K~~~~~~~-~~~~il~~~p~~~l~l~~~~~~~~~~~~~l~~~~~~~gi~~~rv~~~~~~~~~~~~~~ 602 (788)
.++||.+++. .|....+++ +|.++.++.|+.+|.+.|.+. + ++++. ..++|.|.|.+ +++..
T Consensus 2 ~~~i~~~g~~~~~k~~~~li~~~~~~l~~~~p~~~l~i~G~~~---~---~l~~~------~~~~v~~~g~~---~e~~~ 66 (135)
T PF13692_consen 2 ILYIGYLGRIRPDKGLEELIEAALERLKEKHPDIELIIIGNGP---D---ELKRL------RRPNVRFHGFV---EELPE 66 (135)
T ss_dssp -EEEE--S-SSGGGTHHHHHH-HHHHHHHHSTTEEEEEECESS-------HHCCH------HHCTEEEE-S----HHHHH
T ss_pred cccccccccccccccccchhhhHHHHHHHHCcCEEEEEEeCCH---H---HHHHh------cCCCEEEcCCH---HHHHH
Confidence 4678888877 488888999 999999999999999998742 1 23332 23699999997 47899
Q ss_pred hcccccEeecCCCC--CCchhHHHHhhhCCceeecCCCccCccchhHHHhhhCCcccccCCHHHHHHHHHHHhcC
Q 003891 603 AYSLMDISLDTFPY--AGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIAKNEDEYVQLALQLASD 675 (788)
Q Consensus 603 ~~~~~Dv~Ld~~~~--~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l~~~gl~~~ia~~~~~y~~~a~~l~~d 675 (788)
.++.|||++.|+.. +.+++++|+|++|+|||+... . ...+....|..-++..|.+++++...+|.+|
T Consensus 67 ~l~~~dv~l~p~~~~~~~~~k~~e~~~~G~pvi~~~~-~-----~~~~~~~~~~~~~~~~~~~~l~~~i~~l~~d 135 (135)
T PF13692_consen 67 ILAAADVGLIPSRFNEGFPNKLLEAMAAGKPVIASDN-G-----AEGIVEEDGCGVLVANDPEELAEAIERLLND 135 (135)
T ss_dssp HHHC-SEEEE-BSS-SCC-HHHHHHHCTT--EEEEHH-H-----CHCHS---SEEEE-TT-HHHHHHHHHHHHH-
T ss_pred HHHhCCEEEEEeeCCCcCcHHHHHHHHhCCCEEECCc-c-----hhhheeecCCeEEECCCHHHHHHHHHHHhcC
Confidence 99999999999864 346799999999999998443 1 1223333455567788999999999999876
No 217
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=98.89 E-value=9.7e-08 Score=96.84 Aligned_cols=268 Identities=16% Similarity=0.153 Sum_probs=201.7
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHh----CCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----HHHHHHH
Q 003891 30 LGTSLKLAGNTQDGIQKYYEALKI----DPH--YAPAYYNLGVVYSELMQYDTALGCYEKAALERPMY-----AEAYCNM 98 (788)
Q Consensus 30 lg~~~~~~g~~~~A~~~~~~al~~----~p~--~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~-----~~~~~~l 98 (788)
+..+....|.|++++..--..+.. +.. ..+++.+++..+...-++.+++.+-+-.+.+.... ..+...+
T Consensus 49 l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~ 128 (518)
T KOG1941|consen 49 LVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSM 128 (518)
T ss_pred chhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhH
Confidence 445666778888777665444333 211 25688999999999999999999888777653322 3677789
Q ss_pred HHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHhCCC----C------HH
Q 003891 99 GVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWH----Y------AD 168 (788)
Q Consensus 99 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~----~------~~ 168 (788)
+..+..++.++++++.|+++++...++.+.... -.++..+|..+....++++|.-+..++.++... + ..
T Consensus 129 ~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LE-lqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~ 207 (518)
T KOG1941|consen 129 GNAHLGLSVFQKALESFEKALRYAHNNDDAMLE-LQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAM 207 (518)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHhhccCCceee-eehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHH
Confidence 999999999999999999999986655444333 356677888888889999999999999887432 2 23
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcC------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC------CHH
Q 003891 169 AMYNLGVAYGEMLKFDMAIVFYELAFHFN------PHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPN------FSQ 236 (788)
Q Consensus 169 ~~~~la~~~~~~g~~~~A~~~~~~al~~~------p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~------~~~ 236 (788)
+++.++..+..+|+.-.|.++.+++.++. +-.......+|.+|...|+.+.|..-|+++...... ..+
T Consensus 208 ~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~~gdrmgqv~ 287 (518)
T KOG1941|consen 208 SLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTMASLGDRMGQVE 287 (518)
T ss_pred HHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhhhhhhHHHHH
Confidence 57788999999999999999999998762 224567788999999999999999999999876322 134
Q ss_pred HHHHHHHHHHHcCCHHH-----HHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 003891 237 SLNNLGVVYTVQGKMDA-----AAEMIEKAIAANPTY------AEAYNNLGVLYRDAGSISLAIDAYEQCLKI 298 (788)
Q Consensus 237 ~~~~la~~~~~~g~~~e-----A~~~l~kal~~~p~~------~~~~~~la~~~~~~g~~~eA~~~~~~al~l 298 (788)
++...+.++....-..+ |++.-++++++.... ...+..++.+|..+|.-++=.+.+.++-+.
T Consensus 288 al~g~Akc~~~~r~~~k~~~Crale~n~r~levA~~IG~K~~vlK~hcrla~iYrs~gl~d~~~~h~~ra~~~ 360 (518)
T KOG1941|consen 288 ALDGAAKCLETLRLQNKICNCRALEFNTRLLEVASSIGAKLSVLKLHCRLASIYRSKGLQDELRAHVVRAHEC 360 (518)
T ss_pred HHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHH
Confidence 56666777665544444 888888888764332 357888999999999888877777776554
No 218
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.89 E-value=4.9e-08 Score=98.46 Aligned_cols=124 Identities=22% Similarity=0.252 Sum_probs=110.2
Q ss_pred ChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC---CHHHHHHHH
Q 003891 182 KFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQG---KMDAAAEMI 258 (788)
Q Consensus 182 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g---~~~eA~~~l 258 (788)
+.++.+.-++.-+..+|++.+-|..||.+|..+|++..|...|.+++++.|++++.+..+|.+++.+. ...++...+
T Consensus 137 ~~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll 216 (287)
T COG4235 137 EMEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALL 216 (287)
T ss_pred cHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHH
Confidence 35666777788888899999999999999999999999999999999999999999999999887654 467899999
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhh
Q 003891 259 EKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNA 305 (788)
Q Consensus 259 ~kal~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~a 305 (788)
++++..+|++..+.+.||..++..|+|.+|...++..++..|.+..-
T Consensus 217 ~~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~r 263 (287)
T COG4235 217 RQALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDPR 263 (287)
T ss_pred HHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCch
Confidence 99999999999999999999999999999999999999998876543
No 219
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=98.88 E-value=6.4e-08 Score=106.13 Aligned_cols=302 Identities=14% Similarity=0.116 Sum_probs=167.1
Q ss_pred ccChhHHhhhhhhcccCC-CceEEEEEeccccCChhhHHHHHHHhhhCCeEEEccC--CC--------HHHHHHHHHhCC
Q 003891 365 FTHSVSYFIEAPLVYHDY-QNYKVVVYSAVVKADAKTIRFREKVMKKGGIWRDIYG--ID--------EKKVAAMVREDK 433 (788)
Q Consensus 365 ~~H~v~~~~~~~l~~~dr-~~fev~~Y~~~~~~D~~t~~~r~~~~~~~~~~~~~~~--~~--------~~~~a~~i~~d~ 433 (788)
.+.|---++.+++....+ ..|++.+..++..-+ ....+.....-..+....+.+ -+ -.++++.+++.+
T Consensus 8 gtr~~~~~~~p~~~~l~~~~~~~~~~~~tg~h~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 86 (365)
T TIGR00236 8 GTRPEAIKMAPLIRALKKYPEIDSYVIVTAQHRE-MLDQVLDLFHLPPDYDLNIMSPGQTLGEITSNMLEGLEELLLEEK 86 (365)
T ss_pred ecCHHHHHHHHHHHHHhhCCCCCEEEEEeCCCHH-HHHHHHHhcCCCCCeeeecCCCCCCHHHHHHHHHHHHHHHHHHcC
Confidence 344545567777776664 478888888877643 333333222111122223322 22 145788899999
Q ss_pred CcEEEeCCCCCCCCcccccccC--CCCeEEecccCCCCCCCC--CccE-------EEecCCCCCcCcc-------CCCcc
Q 003891 434 IDILVELTGHTANNKLGMMACQ--PAPVQVTWIGYPNTTGLP--TIDY-------RITDSLADPPETK-------QKHVE 495 (788)
Q Consensus 434 idilvdl~g~t~~~~~~~~a~r--~Apvq~~~~g~~~ttg~~--~~Dy-------~i~d~~~~p~~~~-------~~~~e 495 (788)
+||++=. |.+.....+..+.+ -.|+ +..-|...|.+.. .-|- .++|.++.|.+.. ..-.|
T Consensus 87 pDiv~~~-gd~~~~la~a~aa~~~~ipv-~h~~~g~~s~~~~~~~~~~~~r~~~~~~ad~~~~~s~~~~~~l~~~G~~~~ 164 (365)
T TIGR00236 87 PDIVLVQ-GDTTTTLAGALAAFYLQIPV-GHVEAGLRTGDRYSPMPEEINRQLTGHIADLHFAPTEQAKDNLLRENVKAD 164 (365)
T ss_pred CCEEEEe-CCchHHHHHHHHHHHhCCCE-EEEeCCCCcCCCCCCCccHHHHHHHHHHHHhccCCCHHHHHHHHHcCCCcc
Confidence 9999543 11111111122222 2354 2221222222211 0011 1345555554321 11234
Q ss_pred ceEEcCCCccc--cCCCC-C-CCCCCCCCCCCCCCeEEEecCCC---CcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCH
Q 003891 496 ELIRLPECFLC--YTPSP-E-AGPVCPTPALTNGFITFGSFNNL---AKITPKVLQVWARILCAVPNSRLVVKCKPFCCD 568 (788)
Q Consensus 496 ~l~~lp~~~~~--~~~~~-~-~~~~~~~~~~~~~~~~f~~~~~~---~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~ 568 (788)
++..+++..+. +.+.. . ........+ .++.+++++.++. .|..+.+++++.++.+..|+.++++.+.+. .
T Consensus 165 ~I~vign~~~d~~~~~~~~~~~~~~~~~~~-~~~~~vl~~~hr~~~~~k~~~~ll~a~~~l~~~~~~~~~vi~~~~~--~ 241 (365)
T TIGR00236 165 SIFVTGNTVIDALLTNVEIAYSSPVLSEFG-EDKRYILLTLHRRENVGEPLENIFKAIREIVEEFEDVQIVYPVHLN--P 241 (365)
T ss_pred cEEEeCChHHHHHHHHHhhccchhHHHhcC-CCCCEEEEecCchhhhhhHHHHHHHHHHHHHHHCCCCEEEEECCCC--h
Confidence 56666654322 11110 0 111111122 2345566666543 467789999999998888999988875442 2
Q ss_pred HHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHHHHhcccccEeecCCCCCCchhHHHHhhhCCceeecCCCccCccchhHH
Q 003891 569 SVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSL 648 (788)
Q Consensus 569 ~~~~~l~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~~Dv~Ld~~~~~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~ 648 (788)
..+..+. +..|.. ++|.|++.++ ..+++..+..+|+++-++ | +.++||+++|+|||+..... +|. -
T Consensus 242 ~~~~~~~---~~~~~~-~~v~~~~~~~-~~~~~~~l~~ad~vv~~S---g-~~~~EA~a~g~PvI~~~~~~--~~~---e 307 (365)
T TIGR00236 242 VVREPLH---KHLGDS-KRVHLIEPLE-YLDFLNLAANSHLILTDS---G-GVQEEAPSLGKPVLVLRDTT--ERP---E 307 (365)
T ss_pred HHHHHHH---HHhCCC-CCEEEECCCC-hHHHHHHHHhCCEEEECC---h-hHHHHHHHcCCCEEECCCCC--CCh---H
Confidence 3333333 234654 7899999876 678999999999998543 3 34799999999999963110 111 1
Q ss_pred HhhhCCcccccCCHHHHHHHHHHHhcCHHHHHHHHHHH
Q 003891 649 LTKVGLKHLIAKNEDEYVQLALQLASDVTALANLRMSL 686 (788)
Q Consensus 649 l~~~gl~~~ia~~~~~y~~~a~~l~~d~~~~~~~r~~~ 686 (788)
+...|..-++..|+++..+...++.+|++.+++++...
T Consensus 308 ~~~~g~~~lv~~d~~~i~~ai~~ll~~~~~~~~~~~~~ 345 (365)
T TIGR00236 308 TVEAGTNKLVGTDKENITKAAKRLLTDPDEYKKMSNAS 345 (365)
T ss_pred HHhcCceEEeCCCHHHHHHHHHHHHhChHHHHHhhhcC
Confidence 11235444566799999999999999998877776543
No 220
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.87 E-value=9.2e-09 Score=82.92 Aligned_cols=67 Identities=43% Similarity=0.691 Sum_probs=49.8
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhhCC
Q 003891 234 FSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAG-SISLAIDAYEQCLKIDP 300 (788)
Q Consensus 234 ~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g-~~~eA~~~~~~al~l~p 300 (788)
++..+..+|.++...|++++|+.+|+++++.+|+++.+++++|.++..+| ++++|++.++++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 45667777777777777777777777777777777777777777777777 57777777777777766
No 221
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.87 E-value=5.9e-08 Score=93.60 Aligned_cols=103 Identities=22% Similarity=0.341 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 003891 203 ACNNLGVIYKDRDNLDKAVECYQMALSIKPNF---SQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLY 279 (788)
Q Consensus 203 ~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~ 279 (788)
.++.+|.++...|++++|+..|++++.+.++. +.++.++|.++...|++++|+..+++++.+.|.....+.++|.++
T Consensus 37 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i~ 116 (168)
T CHL00033 37 TYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAVIC 116 (168)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHH
Confidence 34444444444444444444444444443321 224444555555555555555555555555444444444444444
Q ss_pred H-------HcCCHH-------HHHHHHHHHHhhCCCChhh
Q 003891 280 R-------DAGSIS-------LAIDAYEQCLKIDPDSRNA 305 (788)
Q Consensus 280 ~-------~~g~~~-------eA~~~~~~al~l~p~~~~a 305 (788)
. .+|+++ +|+.+|++++..+|++...
T Consensus 117 ~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~~~ 156 (168)
T CHL00033 117 HYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNYIE 156 (168)
T ss_pred HHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccHHH
Confidence 4 444443 5666677777777765433
No 222
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=98.87 E-value=9.8e-06 Score=83.48 Aligned_cols=260 Identities=20% Similarity=0.135 Sum_probs=139.3
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCH
Q 003891 30 LGTSLKLAGNTQDGIQKYYEALKIDPH-YAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDL 108 (788)
Q Consensus 30 lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g~~ 108 (788)
-++.....|+++.|.+.|+.++. +|+ ..-.+..|-.-....|..+.|..+.+++-...|..+.++...-...+..|++
T Consensus 126 eAQaal~eG~~~~Ar~kfeAMl~-dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdW 204 (531)
T COG3898 126 EAQAALLEGDYEDARKKFEAMLD-DPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDW 204 (531)
T ss_pred HHHHHHhcCchHHHHHHHHHHhc-ChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCCh
Confidence 34555667899999888888764 333 1222223333334678888999999998888888888888887888888999
Q ss_pred HHHHHHHHHHHhhCCCcH-HHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHH
Q 003891 109 ESAIACYERCLAVSPNFE-IAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAI 187 (788)
Q Consensus 109 ~~A~~~~~~al~~~p~~~-~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 187 (788)
+.|+++.+...+..--.. .+....+..+..-+. .....+...|...-.++.++.|+...+-..-+..+++.|+..++-
T Consensus 205 d~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~-s~ldadp~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~ 283 (531)
T COG3898 205 DGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAM-SLLDADPASARDDALEANKLAPDLVPAAVVAARALFRDGNLRKGS 283 (531)
T ss_pred HHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHH-HHhcCChHHHHHHHHHHhhcCCccchHHHHHHHHHHhccchhhhh
Confidence 999888876554321111 011111111111111 111234555556666666666666555555566666666666666
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH---HhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 003891 188 VFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMA---LSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAA 264 (788)
Q Consensus 188 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~a---l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~ 264 (788)
.+++.+.+..|.- . ++.+|....--+.++.-++++ ..+.|++.+.....+..-+.-|++..|..--+.+...
T Consensus 284 ~ilE~aWK~ePHP-~----ia~lY~~ar~gdta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~ 358 (531)
T COG3898 284 KILETAWKAEPHP-D----IALLYVRARSGDTALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAARE 358 (531)
T ss_pred hHHHHHHhcCCCh-H----HHHHHHHhcCCCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhh
Confidence 6666665555531 1 122222222222222222222 2334555555555555555555555555555555555
Q ss_pred CCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHh
Q 003891 265 NPTYAEAYNNLGVLYRDA-GSISLAIDAYEQCLK 297 (788)
Q Consensus 265 ~p~~~~~~~~la~~~~~~-g~~~eA~~~~~~al~ 297 (788)
.|. ..++..|+.+-... |+-.+...++-++++
T Consensus 359 ~pr-es~~lLlAdIeeAetGDqg~vR~wlAqav~ 391 (531)
T COG3898 359 APR-ESAYLLLADIEEAETGDQGKVRQWLAQAVK 391 (531)
T ss_pred Cch-hhHHHHHHHHHhhccCchHHHHHHHHHHhc
Confidence 444 23344444444433 555555555554443
No 223
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.86 E-value=7e-08 Score=93.43 Aligned_cols=100 Identities=29% Similarity=0.403 Sum_probs=84.0
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHH
Q 003891 55 PHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMY---AEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNN 131 (788)
Q Consensus 55 p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 131 (788)
+....+++.+|..+...|++++|+.+|+++++..|+. ..++..+|.++...|++++|+.+++++++..|++...+..
T Consensus 32 ~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 111 (172)
T PRK02603 32 AKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNN 111 (172)
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHH
Confidence 3567789999999999999999999999999887653 5789999999999999999999999999999998887777
Q ss_pred HHHHHHHhhhhhhhcCCHHHHHH
Q 003891 132 MAIALTDLGTKVKLEGDINQGVA 154 (788)
Q Consensus 132 la~~l~~lg~~~~~~g~~~~A~~ 154 (788)
++.++..++......+++++|+.
T Consensus 112 lg~~~~~~g~~~~a~~~~~~A~~ 134 (172)
T PRK02603 112 IAVIYHKRGEKAEEAGDQDEAEA 134 (172)
T ss_pred HHHHHHHcCChHhHhhCHHHHHH
Confidence 77777777655555555555443
No 224
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.85 E-value=3.1e-08 Score=84.16 Aligned_cols=99 Identities=39% Similarity=0.653 Sum_probs=93.6
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC
Q 003891 26 VLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNR 105 (788)
Q Consensus 26 ~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~ 105 (788)
+++.+|..+...|++++|+..++++++..|.+..+++.+|.++...+++++|+.++++++...|.+...+..+|.++...
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence 36778888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhhCCC
Q 003891 106 GDLESAIACYERCLAVSPN 124 (788)
Q Consensus 106 g~~~~A~~~~~~al~~~p~ 124 (788)
|++++|...++++++..|+
T Consensus 82 ~~~~~a~~~~~~~~~~~~~ 100 (100)
T cd00189 82 GKYEEALEAYEKALELDPN 100 (100)
T ss_pred HhHHHHHHHHHHHHccCCC
Confidence 9999999999999988763
No 225
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=98.84 E-value=3.5e-08 Score=107.51 Aligned_cols=155 Identities=22% Similarity=0.317 Sum_probs=102.5
Q ss_pred CCCCCCCeEEEecCCC--CcCCHHHH-HHHHHHHhHcCCcEEE-EecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcC
Q 003891 520 PALTNGFITFGSFNNL--AKITPKVL-QVWARILCAVPNSRLV-VKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLIL 595 (788)
Q Consensus 520 ~~~~~~~~~f~~~~~~--~K~~~~~~-~~~~~il~~~p~~~l~-l~~~~~~~~~~~~~l~~~~~~~gi~~~rv~~~~~~~ 595 (788)
.+++++..++.++.+. .|...+++ +++..+. . ++.+++ +.|.+ ..+.+++.++++ . ++|.|.|.+
T Consensus 175 ~~~~~~~~~i~~~~g~~~~~~~~~~l~~a~~~l~-~-~~~~~~~i~G~g-----~~~~l~~~~~~~--~-~~v~~~g~~- 243 (350)
T cd03785 175 LGLRPGKPTLLVFGGSQGARAINEAVPEALAELL-R-KRLQVIHQTGKG-----DLEEVKKAYEEL--G-VNYEVFPFI- 243 (350)
T ss_pred cCCCCCCeEEEEECCcHhHHHHHHHHHHHHHHhh-c-cCeEEEEEcCCc-----cHHHHHHHHhcc--C-CCeEEeehh-
Confidence 4555666556565543 33333333 4444443 2 455544 55554 345666666665 3 789999985
Q ss_pred CcHHHHHhcccccEeecCCCCCCchhHHHHhhhCCceeecCCCcc---CccchhHHHhhhCCcccccC---CHHHHHHHH
Q 003891 596 LNHDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVH---AHNVGVSLLTKVGLKHLIAK---NEDEYVQLA 669 (788)
Q Consensus 596 ~~~~~~~~~~~~Dv~Ld~~~~~g~~t~~eal~~GvPvvt~~g~~~---~~r~~~~~l~~~gl~~~ia~---~~~~y~~~a 669 (788)
.++..+|..||+++.+ +|++|++|||++|+|||+.+-... .....+..+...|..-++.. |.+++.+..
T Consensus 244 --~~~~~~l~~ad~~v~~---sg~~t~~Eam~~G~Pvv~~~~~~~~~~~~~~~~~~l~~~g~g~~v~~~~~~~~~l~~~i 318 (350)
T cd03785 244 --DDMAAAYAAADLVISR---AGASTVAELAALGLPAILIPLPYAADDHQTANARALVKAGAAVLIPQEELTPERLAAAL 318 (350)
T ss_pred --hhHHHHHHhcCEEEEC---CCHhHHHHHHHhCCCEEEeecCCCCCCcHHHhHHHHHhCCCEEEEecCCCCHHHHHHHH
Confidence 5777888889999953 367899999999999998653221 11122345555676655543 799999999
Q ss_pred HHHhcCHHHHHHHHHHHHHHh
Q 003891 670 LQLASDVTALANLRMSLRDLM 690 (788)
Q Consensus 670 ~~l~~d~~~~~~~r~~~~~~~ 690 (788)
..+.+|++.++.|+.+.++..
T Consensus 319 ~~ll~~~~~~~~~~~~~~~~~ 339 (350)
T cd03785 319 LELLSDPERLKAMAEAARSLA 339 (350)
T ss_pred HHHhcCHHHHHHHHHHHHhcC
Confidence 999999999999999887654
No 226
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.83 E-value=1.6e-08 Score=81.50 Aligned_cols=67 Identities=42% Similarity=0.686 Sum_probs=45.1
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC-CHHHHHHHHHHHHhhCC
Q 003891 57 YAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRG-DLESAIACYERCLAVSP 123 (788)
Q Consensus 57 ~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p 123 (788)
++..|..+|.+++..|++++|+.+|+++++.+|+++.+++++|.++..+| ++++|++.++++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 45566666666666666666666666666666666666666666666666 56666666666666665
No 227
>PLN02275 transferase, transferring glycosyl groups
Probab=98.82 E-value=2.8e-08 Score=109.08 Aligned_cols=135 Identities=14% Similarity=0.112 Sum_probs=97.6
Q ss_pred CCeEEEecCCC--CcCCHHHHHHHHHHH-----------------hHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCC
Q 003891 525 GFITFGSFNNL--AKITPKVLQVWARIL-----------------CAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLES 585 (788)
Q Consensus 525 ~~~~f~~~~~~--~K~~~~~~~~~~~il-----------------~~~p~~~l~l~~~~~~~~~~~~~l~~~~~~~gi~~ 585 (788)
..++++..+++ .|..+.+++++..+. +..|+.+|+++|+| +.++.+++.++++|++
T Consensus 212 ~~~~i~~~grl~~~k~~~~li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~i~l~ivG~G----~~~~~l~~~~~~~~l~- 286 (371)
T PLN02275 212 RPALVVSSTSWTPDEDFGILLEAAVMYDRRVAARLNESDSASGKQSLYPRLLFIITGKG----PQKAMYEEKISRLNLR- 286 (371)
T ss_pred CcEEEEEeCceeccCCHHHHHHHHHHHHhhhhhccccccccccccccCCCeEEEEEeCC----CCHHHHHHHHHHcCCC-
Confidence 33455566664 788899999877664 23589999999988 6788999999999997
Q ss_pred CcEEEcC-CcCCcHHHHHhcccccEeecCCC----CCCchhHHHHhhhCCceeecCCCccCccchhHHHhhhCCcccccC
Q 003891 586 LRVDLLP-LILLNHDHMQAYSLMDISLDTFP----YAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIAK 660 (788)
Q Consensus 586 ~rv~~~~-~~~~~~~~~~~~~~~Dv~Ld~~~----~~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l~~~gl~~~ia~ 660 (788)
+ ++|.+ .++ .++....|+.+|+++-+++ .+-+++++|||+||+|||+....... .++ .-|..+++..
T Consensus 287 ~-v~~~~~~~~-~~~~~~~l~~aDv~v~~~~s~~~e~~p~~llEAmA~G~PVVa~~~gg~~-----eiv-~~g~~G~lv~ 358 (371)
T PLN02275 287 H-VAFRTMWLE-AEDYPLLLGSADLGVSLHTSSSGLDLPMKVVDMFGCGLPVCAVSYSCIG-----ELV-KDGKNGLLFS 358 (371)
T ss_pred c-eEEEcCCCC-HHHHHHHHHhCCEEEEeccccccccccHHHHHHHHCCCCEEEecCCChH-----HHc-cCCCCeEEEC
Confidence 5 77765 566 7889999999999985432 23478999999999999984322111 122 2255566667
Q ss_pred CHHHHHHHHHHH
Q 003891 661 NEDEYVQLALQL 672 (788)
Q Consensus 661 ~~~~y~~~a~~l 672 (788)
|.+++++...+|
T Consensus 359 ~~~~la~~i~~l 370 (371)
T PLN02275 359 SSSELADQLLEL 370 (371)
T ss_pred CHHHHHHHHHHh
Confidence 778777666554
No 228
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.82 E-value=2.1e-07 Score=87.25 Aligned_cols=117 Identities=22% Similarity=0.174 Sum_probs=91.7
Q ss_pred HcCChHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHH
Q 003891 179 EMLKFDMAIVFYELAFHFNPHC---AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNF---SQSLNNLGVVYTVQGKMD 252 (788)
Q Consensus 179 ~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~ 252 (788)
..++...+...+++.++.+|+. ..+.+.+|.++...|++++|+..|++++...|+. ..+...++.++...|+++
T Consensus 23 ~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d 102 (145)
T PF09976_consen 23 QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYD 102 (145)
T ss_pred HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHH
Confidence 5677888888888888888877 5567778888888888888888888888877554 346778888888888888
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003891 253 AAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCL 296 (788)
Q Consensus 253 eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al 296 (788)
+|+..++.. ...+-.+.++..+|.+|..+|++++|+..|++++
T Consensus 103 ~Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 103 EALATLQQI-PDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHHHhc-cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 888888662 3333446677788889999999999998888874
No 229
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.80 E-value=1.5e-06 Score=101.78 Aligned_cols=232 Identities=10% Similarity=0.034 Sum_probs=195.1
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCC----CHHHHHHHHHHHHHCCCHHHHHHHH
Q 003891 41 QDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALE-RPM----YAEAYCNMGVIYKNRGDLESAIACY 115 (788)
Q Consensus 41 ~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~-~p~----~~~~~~~la~~~~~~g~~~~A~~~~ 115 (788)
.+..+-|++.+..+|+..-.|........+.++.++|.+.+++|+.. ++. ....|..+-++...-|.-+.-.+.|
T Consensus 1441 pesaeDferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVF 1520 (1710)
T KOG1070|consen 1441 PESAEDFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVF 1520 (1710)
T ss_pred CcCHHHHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHH
Confidence 34567788888899999999999999999999999999999999874 333 2345555555555667777888899
Q ss_pred HHHHhhCCCcHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 003891 116 ERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFH 195 (788)
Q Consensus 116 ~~al~~~p~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 195 (788)
++|.+..... .+|..|..+|...+.+++|.++++..++...+...+|..++..++.+++-+.|...+++|++
T Consensus 1521 eRAcqycd~~--------~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~ 1592 (1710)
T KOG1070|consen 1521 ERACQYCDAY--------TVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALK 1592 (1710)
T ss_pred HHHHHhcchH--------HHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 9998765432 35667777888888999999999999999988899999999999999999999999999999
Q ss_pred cCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHH
Q 003891 196 FNPH--CAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAAN--PTYAEA 271 (788)
Q Consensus 196 ~~p~--~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~--p~~~~~ 271 (788)
.-|. +.+.....|.+-++.|+.+.+..+|+..+...|...+.|.-+...-.+.|+.+.+...|++++.+. +.....
T Consensus 1593 ~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKf 1672 (1710)
T KOG1070|consen 1593 SLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKF 1672 (1710)
T ss_pred hcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHH
Confidence 9887 788888999999999999999999999999999999999999999999999999999999999874 333444
Q ss_pred HHHHHHHHH
Q 003891 272 YNNLGVLYR 280 (788)
Q Consensus 272 ~~~la~~~~ 280 (788)
++..=.-|.
T Consensus 1673 ffKkwLeyE 1681 (1710)
T KOG1070|consen 1673 FFKKWLEYE 1681 (1710)
T ss_pred HHHHHHHHH
Confidence 444333333
No 230
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.80 E-value=1.5e-07 Score=95.07 Aligned_cols=122 Identities=20% Similarity=0.141 Sum_probs=114.0
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC---CHHHHHHHH
Q 003891 148 DINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRD---NLDKAVECY 224 (788)
Q Consensus 148 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g---~~~eA~~~~ 224 (788)
+.++.+.-++.-+..+|++.+-|..||.+|..+|+++.|...|.+++++.|++++.+..+|.++..+. ...++...+
T Consensus 137 ~~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll 216 (287)
T COG4235 137 EMEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALL 216 (287)
T ss_pred cHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHH
Confidence 46777888889999999999999999999999999999999999999999999999999999888754 467899999
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 003891 225 QMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYA 269 (788)
Q Consensus 225 ~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~ 269 (788)
++++..+|.+..+.+.||..++.+|+|.+|...+++.++..|.+.
T Consensus 217 ~~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~ 261 (287)
T COG4235 217 RQALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADD 261 (287)
T ss_pred HHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCC
Confidence 999999999999999999999999999999999999999987653
No 231
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.79 E-value=2.2e-07 Score=104.70 Aligned_cols=142 Identities=22% Similarity=0.200 Sum_probs=118.2
Q ss_pred CCCCHHHH--HHHHHHHHHcCC---hHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC--------CHHHHHHHHHHHHh
Q 003891 163 NWHYADAM--YNLGVAYGEMLK---FDMAIVFYELAFHFNPHCAEACNNLGVIYKDRD--------NLDKAVECYQMALS 229 (788)
Q Consensus 163 ~p~~~~~~--~~la~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g--------~~~eA~~~~~~al~ 229 (788)
.|.+.++| +..|.-+...++ .++|+.+|+++++.+|++..++..++.++.... +..++.+..++++.
T Consensus 333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~a 412 (517)
T PRK10153 333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVA 412 (517)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhh
Confidence 45555554 455666655544 789999999999999999999998888775542 34566666777666
Q ss_pred h--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhh
Q 003891 230 I--KPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNA 305 (788)
Q Consensus 230 ~--~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~a 305 (788)
. .+..+.++..+|..+...|++++|...+++++.++| +..+|..+|.++...|++++|++.|++|+.++|.++..
T Consensus 413 l~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt~ 489 (517)
T PRK10153 413 LPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENTL 489 (517)
T ss_pred cccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchH
Confidence 4 677788999999999999999999999999999999 48899999999999999999999999999999998853
No 232
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=98.79 E-value=4.4e-09 Score=105.53 Aligned_cols=241 Identities=15% Similarity=0.067 Sum_probs=158.4
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC
Q 003891 27 LTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRG 106 (788)
Q Consensus 27 l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g 106 (788)
+-..|+.|+++|+|++|+.||.+++..+|.|+..+.+.+..|++++.|..|...++.++.++..+..+|...+..-..+|
T Consensus 100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg 179 (536)
T KOG4648|consen 100 IKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLG 179 (536)
T ss_pred HHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence 45567778888888888888888888888888888888888888888888888888888887777778888888888888
Q ss_pred CHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHH
Q 003891 107 DLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMA 186 (788)
Q Consensus 107 ~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A 186 (788)
+..+|.+.++.++++.|++.+....++. +. ...++ +-+.+..|. +-.|
T Consensus 180 ~~~EAKkD~E~vL~LEP~~~ELkK~~a~----i~-------Sl~E~----~I~~KsT~G-----------------~~~A 227 (536)
T KOG4648|consen 180 NNMEAKKDCETVLALEPKNIELKKSLAR----IN-------SLRER----KIATKSTPG-----------------FTPA 227 (536)
T ss_pred hHHHHHHhHHHHHhhCcccHHHHHHHHH----hc-------chHhh----hHHhhcCCC-----------------CCcc
Confidence 8888888888888888776543322221 11 11111 001111111 1112
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 003891 187 IVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANP 266 (788)
Q Consensus 187 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p 266 (788)
.+-..+++.+ -.-|..+...|.++.++.++-+-+....++...-.+ +..|.+..++++++.-..+++..+|
T Consensus 228 ~Q~~~Q~l~~--------K~~G~~Fsk~~~~~~~i~~~~~~~A~~~~~~~L~~~-~~~~~KI~~~~~~~~~~~~~~~~~~ 298 (536)
T KOG4648|consen 228 RQGMIQILPI--------KKPGYKFSKKAMRSVPVVDVVSPRATIDDSNQLRIS-DEDIDKIFNSNCGIIEEVKKTNPKP 298 (536)
T ss_pred ccchhhhccc--------cCcchhhhhhhccccceeEeeccccccCccccCccc-HHHHHHHhhcchhHHHHHHhcCCCC
Confidence 2222222211 112455666677777777777766555444444344 6667777888888888888888877
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhhHHh
Q 003891 267 TYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQN 308 (788)
Q Consensus 267 ~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~a~~~ 308 (788)
........-+..---.|...++...++.++.+.|.+..+...
T Consensus 299 s~~~~~s~~~~A~T~~~~~~E~K~~~~T~~~~~P~~~~~~~~ 340 (536)
T KOG4648|consen 299 TPMPDTSGPPKAETIAKTSKEVKPTKQTAVKVAPAVETPKET 340 (536)
T ss_pred CcCcccCCCchhHHHHhhhhhcCcchhheeeeccccccchhh
Confidence 765555555555556677788999999999999998876543
No 233
>cd03786 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase family are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc). The enzyme serves to produce an activated form of ManNAc residues (UDP-ManNAc) for use in the biosynthesis of a variety of cell surface polysaccharides; The mammalian enzyme is bifunctional, catalyzing both the inversion of stereochemistry at C-2 and the hydrolysis of the UDP-sugar linkage to generate free ManNAc. It also catalyzes the phosphorylation of ManNAc to generate ManNAc 6-phosphate, a precursor to salic acids. In mammals, sialic acids are found at the termini of oligosaccharides in a large variety of cell surface glycoconjugates and are key mediators of cell-cell recognition events. Mutations in human members of this family have been associated with Sialuria, a rare disease caused by the disorders of sialic acid metabolism. This family belongs to the GT-B st
Probab=98.78 E-value=8e-08 Score=105.29 Aligned_cols=295 Identities=14% Similarity=0.109 Sum_probs=164.1
Q ss_pred hhhhhhcccCC-CceEEEEEeccccCChhh-HHHHHH-HhhhCCeEEEccCCC----------HHHHHHHHHhCCCcEEE
Q 003891 372 FIEAPLVYHDY-QNYKVVVYSAVVKADAKT-IRFREK-VMKKGGIWRDIYGID----------EKKVAAMVREDKIDILV 438 (788)
Q Consensus 372 ~~~~~l~~~dr-~~fev~~Y~~~~~~D~~t-~~~r~~-~~~~~~~~~~~~~~~----------~~~~a~~i~~d~idilv 438 (788)
.+.+++..... .++++.+..++..-|..- ..+..- .....+++-.+.+.+ ..++.+.|++.++||++
T Consensus 14 ~~~pl~~~l~~~~~~~~~~~~tg~h~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~pDvV~ 93 (363)
T cd03786 14 KLAPLIRALKKDPGFELVLVVTGQHYDMEMGVTFFEILFIIKPDYDLLLGSDSQSLGAQTAGLLIGLEAVLLEEKPDLVL 93 (363)
T ss_pred HHHHHHHHHhcCCCCCEEEEEeCCCCChhhhHHHHHhhCCCCCCEEEecCCCCCCHHHHHHHHHHHHHHHHHHhCCCEEE
Confidence 34455555444 488998888876555331 111211 111123333344331 14567778899999986
Q ss_pred eCCCCCCCCcccccccCCCCeEEecccC-CCCCCCCCccE-------EEecCCCCCcCccCCC-------ccceEEcCCC
Q 003891 439 ELTGHTANNKLGMMACQPAPVQVTWIGY-PNTTGLPTIDY-------RITDSLADPPETKQKH-------VEELIRLPEC 503 (788)
Q Consensus 439 dl~g~t~~~~~~~~a~r~Apvq~~~~g~-~~ttg~~~~Dy-------~i~d~~~~p~~~~~~~-------~e~l~~lp~~ 503 (788)
=. |++...-...++.|..-+.+...-+ -.|.-.+.++. .++|.++.|.+....+ .+++...++.
T Consensus 94 ~~-g~~~~~~~~~~aa~~~~iPvv~~~~g~~s~~~~~~~~~~r~~~~~~ad~~~~~s~~~~~~l~~~G~~~~kI~vign~ 172 (363)
T cd03786 94 VL-GDTNETLAAALAAFKLGIPVAHVEAGLRSFDRGMPDEENRHAIDKLSDLHFAPTEEARRNLLQEGEPPERIFVVGNT 172 (363)
T ss_pred Ee-CCchHHHHHHHHHHHcCCCEEEEecccccCCCCCCchHHHHHHHHHhhhccCCCHHHHHHHHHcCCCcccEEEECch
Confidence 43 3332222233444444444433211 01100011111 1345555554332211 3446566654
Q ss_pred ccc---cCCCCC-CCCCCCCCCCCCCCeEEEecCCC-----CcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHH
Q 003891 504 FLC---YTPSPE-AGPVCPTPALTNGFITFGSFNNL-----AKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRF 574 (788)
Q Consensus 504 ~~~---~~~~~~-~~~~~~~~~~~~~~~~f~~~~~~-----~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~~~~l 574 (788)
... +.+... ....+...+++++.+++.++++. .|..+.+++++.++... +.++++.+.+ ..+..+
T Consensus 173 v~d~~~~~~~~~~~~~~~~~~~~~~~~~vlv~~~r~~~~~~~k~~~~l~~al~~l~~~--~~~vi~~~~~----~~~~~l 246 (363)
T cd03786 173 MIDALLRLLELAKKELILELLGLLPKKYILVTLHRVENVDDGEQLEEILEALAELAEE--DVPVVFPNHP----RTRPRI 246 (363)
T ss_pred HHHHHHHHHHhhccchhhhhcccCCCCEEEEEeCCccccCChHHHHHHHHHHHHHHhc--CCEEEEECCC----ChHHHH
Confidence 321 111111 11111234556666666666664 46777888888777543 4555554444 456778
Q ss_pred HHHHHHcCCCCCcEEEcCCcCCcHHHHHhcccccEeecCCCCCCchhHHHHhhhCCceeecCCCccCccchhHHHhhhCC
Q 003891 575 LSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGL 654 (788)
Q Consensus 575 ~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~~Dv~Ld~~~~~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l~~~gl 654 (788)
++.+.+.|...++|.|.+... ..++...|..||+++-++. +.+.||+++|+|||+..... ..-.+...|.
T Consensus 247 ~~~~~~~~~~~~~v~~~~~~~-~~~~~~l~~~ad~~v~~Sg----gi~~Ea~~~g~PvI~~~~~~-----~~~~~~~~g~ 316 (363)
T cd03786 247 REAGLEFLGHHPNVLLISPLG-YLYFLLLLKNADLVLTDSG----GIQEEASFLGVPVLNLRDRT-----ERPETVESGT 316 (363)
T ss_pred HHHHHhhccCCCCEEEECCcC-HHHHHHHHHcCcEEEEcCc----cHHhhhhhcCCCEEeeCCCC-----ccchhhheee
Confidence 888888887347899998765 5677778899999996642 35789999999999975321 1112333466
Q ss_pred cccccCCHHHHHHHHHHHhcCHHHHHHHH
Q 003891 655 KHLIAKNEDEYVQLALQLASDVTALANLR 683 (788)
Q Consensus 655 ~~~ia~~~~~y~~~a~~l~~d~~~~~~~r 683 (788)
.-++..|.++.++....+.+|+..++.++
T Consensus 317 ~~~~~~~~~~i~~~i~~ll~~~~~~~~~~ 345 (363)
T cd03786 317 NVLVGTDPEAILAAIEKLLSDEFAYSLMS 345 (363)
T ss_pred EEecCCCHHHHHHHHHHHhcCchhhhcCC
Confidence 55555678999999999999987766654
No 234
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=98.78 E-value=5.7e-07 Score=85.30 Aligned_cols=196 Identities=18% Similarity=0.179 Sum_probs=126.3
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Q 003891 57 YAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIAL 136 (788)
Q Consensus 57 ~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l 136 (788)
.+..++..|..|-..|-..-|...|.+++.+.|+.+.+++.+|..+...|+++.|.+.|...++++|.+.-+..+.+..+
T Consensus 64 RA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~ 143 (297)
T COG4785 64 RAQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIAL 143 (297)
T ss_pred HHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceee
Confidence 35567778888888888889999999999999999999999999999999999999999999999998876555554444
Q ss_pred HHhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHH-HHHhcCCCCHHHHHHHHHHHHHcC
Q 003891 137 TDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYE-LAFHFNPHCAEACNNLGVIYKDRD 215 (788)
Q Consensus 137 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~-~al~~~p~~~~~~~~la~~~~~~g 215 (788)
+. -|++.-|.+-+.+-.+.+|+++---..+-.. ...-+..+|...+. ++...+.+ ...|+..+.. .|
T Consensus 144 YY-------~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~-E~k~dP~~A~tnL~qR~~~~d~e-~WG~~iV~~y---Lg 211 (297)
T COG4785 144 YY-------GGRYKLAQDDLLAFYQDDPNDPFRSLWLYLN-EQKLDPKQAKTNLKQRAEKSDKE-QWGWNIVEFY---LG 211 (297)
T ss_pred ee-------cCchHhhHHHHHHHHhcCCCChHHHHHHHHH-HhhCCHHHHHHHHHHHHHhccHh-hhhHHHHHHH---Hh
Confidence 43 4688888888888888888887532222111 22335556655443 33333322 2222222111 12
Q ss_pred CHHHHHHHHHHHHhhCCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 003891 216 NLDKAVECYQMALSIKPNF-------SQSLNNLGVVYTVQGKMDAAAEMIEKAIAAN 265 (788)
Q Consensus 216 ~~~eA~~~~~~al~~~p~~-------~~~~~~la~~~~~~g~~~eA~~~l~kal~~~ 265 (788)
+..+ ...++++..-..++ .+.++.+|..+...|+.++|...|+-++..+
T Consensus 212 kiS~-e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiann 267 (297)
T COG4785 212 KISE-ETLMERLKADATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANN 267 (297)
T ss_pred hccH-HHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh
Confidence 2211 12233333322222 3466777777777777777777777776653
No 235
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=98.78 E-value=7.9e-08 Score=106.06 Aligned_cols=138 Identities=22% Similarity=0.221 Sum_probs=95.1
Q ss_pred cCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHc-CCCCCcEEEcCCcCCcHHHHHhcccccEeecCCC
Q 003891 537 KITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQL-GLESLRVDLLPLILLNHDHMQAYSLMDISLDTFP 615 (788)
Q Consensus 537 K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~~~~l~~~~~~~-gi~~~rv~~~~~~~~~~~~~~~~~~~Dv~Ld~~~ 615 (788)
++.+.+++++.++.+..|+.++++.+++ ...++.+++.+.+. |+. +.+.. .+...+|+.+|+++-++
T Consensus 202 ~~~~~l~~a~~~l~~~~~~~~~ii~~~~---~~~~~~~~~~~~~~~~~~---v~~~~-----~~~~~~~~~aDl~v~~s- 269 (380)
T PRK00025 202 RLLPPFLKAAQLLQQRYPDLRFVLPLVN---PKRREQIEEALAEYAGLE---VTLLD-----GQKREAMAAADAALAAS- 269 (380)
T ss_pred HHHHHHHHHHHHHHHhCCCeEEEEecCC---hhhHHHHHHHHhhcCCCC---eEEEc-----ccHHHHHHhCCEEEECc-
Confidence 4578888999988888899998888652 14566777777777 664 44432 35677888899999753
Q ss_pred CCCchhHHHHhhhCCceeecCCCccCccchhHHH---hhhC----------Cccccc--CCHHHHHHHHHHHhcCHHHHH
Q 003891 616 YAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLL---TKVG----------LKHLIA--KNEDEYVQLALQLASDVTALA 680 (788)
Q Consensus 616 ~~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l---~~~g----------l~~~ia--~~~~~y~~~a~~l~~d~~~~~ 680 (788)
|++++|||++|+|||+.+.-..-....+..+ ...| .++++. .|+++..+...++.+|++.++
T Consensus 270 ---G~~~lEa~a~G~PvI~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ll~~~~~~~ 346 (380)
T PRK00025 270 ---GTVTLELALLKVPMVVGYKVSPLTFWIAKRLVKVPYVSLPNLLAGRELVPELLQEEATPEKLARALLPLLADGARRQ 346 (380)
T ss_pred ---cHHHHHHHHhCCCEEEEEccCHHHHHHHHHHHcCCeeehHHHhcCCCcchhhcCCCCCHHHHHHHHHHHhcCHHHHH
Confidence 6777799999999998643211111111111 0112 234443 468899999999999999999
Q ss_pred HHHHHHHHH
Q 003891 681 NLRMSLRDL 689 (788)
Q Consensus 681 ~~r~~~~~~ 689 (788)
.|++++++.
T Consensus 347 ~~~~~~~~~ 355 (380)
T PRK00025 347 ALLEGFTEL 355 (380)
T ss_pred HHHHHHHHH
Confidence 999987544
No 236
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.77 E-value=2.7e-07 Score=103.95 Aligned_cols=142 Identities=16% Similarity=0.109 Sum_probs=82.4
Q ss_pred hCCCCHHHH--HHHHHHHHHcCC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC--------CCHHHHHHHHHHHH
Q 003891 53 IDPHYAPAY--YNLGVVYSELMQ---YDTALGCYEKAALERPMYAEAYCNMGVIYKNR--------GDLESAIACYERCL 119 (788)
Q Consensus 53 ~~p~~~~~~--~~lg~~~~~~g~---~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~--------g~~~~A~~~~~~al 119 (788)
..|.+..+| +..|..+...++ ..+|+.+|+++++++|+++.++..++.+|... .+..++.+..++++
T Consensus 332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~ 411 (517)
T PRK10153 332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIV 411 (517)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhh
Confidence 344443333 344444444333 55666666666666666666666665555432 12344555555555
Q ss_pred hh--CCCcHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC
Q 003891 120 AV--SPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFN 197 (788)
Q Consensus 120 ~~--~p~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 197 (788)
.+ ++..+.. +..+|..+...|++++|...+++++.++| +..+|..+|.++...|++++|++.|++++.++
T Consensus 412 al~~~~~~~~~-------~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~ 483 (517)
T PRK10153 412 ALPELNVLPRI-------YEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLR 483 (517)
T ss_pred hcccCcCChHH-------HHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 53 3333322 22233333345677777777777777777 46677777777777777777777777777777
Q ss_pred CCCHH
Q 003891 198 PHCAE 202 (788)
Q Consensus 198 p~~~~ 202 (788)
|.++.
T Consensus 484 P~~pt 488 (517)
T PRK10153 484 PGENT 488 (517)
T ss_pred CCCch
Confidence 77654
No 237
>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional
Probab=98.77 E-value=9.2e-08 Score=113.67 Aligned_cols=178 Identities=16% Similarity=0.130 Sum_probs=125.6
Q ss_pred CCeEEEecCCC--CcCCHHHHHHHHHHHhHcCC----cEEEEecCCCCCH-HHHHHHHHHHHHc--------CCC-CC-c
Q 003891 525 GFITFGSFNNL--AKITPKVLQVWARILCAVPN----SRLVVKCKPFCCD-SVRHRFLSTLEQL--------GLE-SL-R 587 (788)
Q Consensus 525 ~~~~f~~~~~~--~K~~~~~~~~~~~il~~~p~----~~l~l~~~~~~~~-~~~~~l~~~~~~~--------gi~-~~-r 587 (788)
+..+++++.|+ .|..+..++++.++++..|+ .+|++++.|..+. +..+.+++.+.+. |.. -. .
T Consensus 264 ~~~~il~VgRl~~~Kgi~~~l~A~~~ll~~~p~~~~~v~lv~v~~~sr~~~~~~~~l~~~~~~~v~~in~~~~~~~~~pv 343 (726)
T PRK14501 264 GRKIILSIDRLDYTKGIPRRLLAFERFLEKNPEWRGKVRLVQVAVPSRTGVPQYQEMKREIDELVGRINGEFGTVDWTPI 343 (726)
T ss_pred CCEEEEEecCcccccCHHHHHHHHHHHHHhCccccCCEEEEEEecCCCcchHHHHHHHHHHHHHHHHHHhhcCCCCcceE
Confidence 45578888988 89999999999999999996 6888887553222 3334444444432 221 11 2
Q ss_pred EEEcCCcCCcHHHHHhcccccEeecCCCC-CCchhHHHHhhh-----CCceeecCCCccCccchhH-HHhhhCCcccc--
Q 003891 588 VDLLPLILLNHDHMQAYSLMDISLDTFPY-AGTTTTCESLYM-----GVPCVTMAGSVHAHNVGVS-LLTKVGLKHLI-- 658 (788)
Q Consensus 588 v~~~~~~~~~~~~~~~~~~~Dv~Ld~~~~-~g~~t~~eal~~-----GvPvvt~~g~~~~~r~~~~-~l~~~gl~~~i-- 658 (788)
+.|.+.++ .++..+.|+.+||||.|+-+ +-+.+++|||++ |+|||+ ...|++ -|. ..++
T Consensus 344 ~~~~~~~~-~~~l~~ly~~aDv~v~~S~~EG~~lv~~Eama~~~~~~g~~vls-------~~~G~~~~l~----~~llv~ 411 (726)
T PRK14501 344 HYFYRSLP-FEELVALYRAADVALVTPLRDGMNLVAKEYVASRTDGDGVLILS-------EMAGAAAELA----EALLVN 411 (726)
T ss_pred EEEeCCCC-HHHHHHHHHhccEEEecccccccCcccceEEEEcCCCCceEEEe-------cccchhHHhC----cCeEEC
Confidence 34556666 79999999999999999988 559999999999 556664 222211 111 1222
Q ss_pred cCCHHHHHHHHHHHhcCH-HHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHHHh
Q 003891 659 AKNEDEYVQLALQLASDV-TALANLRMSLRDLMSKSPVCDGQNFALGLESTYRNMWHRYC 717 (788)
Q Consensus 659 a~~~~~y~~~a~~l~~d~-~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~ 717 (788)
..|.+++++...++.+++ +.+....+++++++. -||...+++.+.+.|+++|...-
T Consensus 412 P~d~~~la~ai~~~l~~~~~e~~~r~~~~~~~v~---~~~~~~w~~~~l~~l~~~~~~~~ 468 (726)
T PRK14501 412 PNDIEGIAAAIKRALEMPEEEQRERMQAMQERLR---RYDVHKWASDFLDELREAAEKNK 468 (726)
T ss_pred CCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH---hCCHHHHHHHHHHHHHHHHhhhh
Confidence 358999999998888754 444444456777754 37999999999999999998654
No 238
>PRK11906 transcriptional regulator; Provisional
Probab=98.76 E-value=5.5e-07 Score=96.35 Aligned_cols=166 Identities=11% Similarity=0.071 Sum_probs=120.0
Q ss_pred HHHHHHHHHCC---CHHHHHHHHHHHH---hhCCCcHHHHHHHHHHHHHhhhh--hhhcCCHHHHHHHHHHHHHhCCCCH
Q 003891 96 CNMGVIYKNRG---DLESAIACYERCL---AVSPNFEIAKNNMAIALTDLGTK--VKLEGDINQGVAYYKKALYYNWHYA 167 (788)
Q Consensus 96 ~~la~~~~~~g---~~~~A~~~~~~al---~~~p~~~~~~~~la~~l~~lg~~--~~~~g~~~~A~~~~~~al~~~p~~~ 167 (788)
+..|......+ ..+.|+.+|.+++ +++|++..++..++.++...... .....+..+|.+..+++++++|.++
T Consensus 259 ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da 338 (458)
T PRK11906 259 MLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDG 338 (458)
T ss_pred HHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCH
Confidence 55565555544 3567888899999 88888888888777777654221 1134566778888888888888888
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH-HH
Q 003891 168 DAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVV-YT 246 (788)
Q Consensus 168 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~-~~ 246 (788)
.++..+|.++...++++.|...|++++.++|+.+.+++..|.+....|+.++|.+.++++++++|....+-...-.+ .+
T Consensus 339 ~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~ 418 (458)
T PRK11906 339 KILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMY 418 (458)
T ss_pred HHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHH
Confidence 88888888888888888888888888888888888888888888888888888888888888888765543333333 33
Q ss_pred HcCCHHHHHHHHHHH
Q 003891 247 VQGKMDAAAEMIEKA 261 (788)
Q Consensus 247 ~~g~~~eA~~~l~ka 261 (788)
-....++|+..|-+-
T Consensus 419 ~~~~~~~~~~~~~~~ 433 (458)
T PRK11906 419 VPNPLKNNIKLYYKE 433 (458)
T ss_pred cCCchhhhHHHHhhc
Confidence 445566666665443
No 239
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.75 E-value=2.1e-07 Score=97.14 Aligned_cols=72 Identities=24% Similarity=0.350 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhhHHh
Q 003891 237 SLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQN 308 (788)
Q Consensus 237 ~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~a~~~ 308 (788)
++.|++.++.++++|.+|+....++|.++|++..+++..|.++..+|+++.|+..|+++++++|+|..+...
T Consensus 259 ~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~e 330 (397)
T KOG0543|consen 259 CHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAE 330 (397)
T ss_pred HhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHH
Confidence 344555555555555555555555555555555555555555555555555555555555555555444443
No 240
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=98.75 E-value=1e-07 Score=103.80 Aligned_cols=155 Identities=22% Similarity=0.288 Sum_probs=101.7
Q ss_pred CCCCCCeEEEecCCC--CcCCHH-HHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCc
Q 003891 521 ALTNGFITFGSFNNL--AKITPK-VLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLN 597 (788)
Q Consensus 521 ~~~~~~~~f~~~~~~--~K~~~~-~~~~~~~il~~~p~~~l~l~~~~~~~~~~~~~l~~~~~~~gi~~~rv~~~~~~~~~ 597 (788)
+++++.++++++++. .|.... +++++.++.+ ++.++++++++ ...+.+++.+++.|+. +++.|. . .
T Consensus 174 ~~~~~~~~i~~~gg~~~~~~~~~~l~~a~~~l~~--~~~~~~~~~g~----~~~~~l~~~~~~~~l~-~~v~~~-~---~ 242 (348)
T TIGR01133 174 GLREGKPTILVLGGSQGAKILNELVPKALAKLAE--KGIQIVHQTGK----NDLEKVKNVYQELGIE-AIVTFI-D---E 242 (348)
T ss_pred CCCCCCeEEEEECCchhHHHHHHHHHHHHHHHhh--cCcEEEEECCc----chHHHHHHHHhhCCce-EEecCc-c---c
Confidence 556667777777654 333333 2355555443 23455444332 1236788888888885 666665 1 2
Q ss_pred HHHHHhcccccEeecCCCCCCchhHHHHhhhCCceeecCCCccC--ccchhHHHhhhCCccccc-C--CHHHHHHHHHHH
Q 003891 598 HDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHA--HNVGVSLLTKVGLKHLIA-K--NEDEYVQLALQL 672 (788)
Q Consensus 598 ~~~~~~~~~~Dv~Ld~~~~~g~~t~~eal~~GvPvvt~~g~~~~--~r~~~~~l~~~gl~~~ia-~--~~~~y~~~a~~l 672 (788)
+....|..||+++-+ +|++|++|||++|+|||+.+-.... .+..+.++...|..-++. . +.+++++...++
T Consensus 243 -~~~~~l~~ad~~v~~---~g~~~l~Ea~~~g~Pvv~~~~~~~~~~~~~~~~~i~~~~~G~~~~~~~~~~~~l~~~i~~l 318 (348)
T TIGR01133 243 -NMAAAYAAADLVISR---AGASTVAELAAAGVPAILIPYPYAADDQYYNAKFLEDLGAGLVIRQKELLPEKLLEALLKL 318 (348)
T ss_pred -CHHHHHHhCCEEEEC---CChhHHHHHHHcCCCEEEeeCCCCccchhhHHHHHHHCCCEEEEecccCCHHHHHHHHHHH
Confidence 566777889999953 4678899999999999986432211 122334566655554443 2 499999999999
Q ss_pred hcCHHHHHHHHHHHHHHh
Q 003891 673 ASDVTALANLRMSLRDLM 690 (788)
Q Consensus 673 ~~d~~~~~~~r~~~~~~~ 690 (788)
.+|++.+++|+++.++..
T Consensus 319 l~~~~~~~~~~~~~~~~~ 336 (348)
T TIGR01133 319 LLDPANLEAMAEAARKLA 336 (348)
T ss_pred HcCHHHHHHHHHHHHhcC
Confidence 999999999999887654
No 241
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.75 E-value=2.4e-07 Score=96.65 Aligned_cols=137 Identities=16% Similarity=0.153 Sum_probs=113.7
Q ss_pred HHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC---------------CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003891 20 AECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPH---------------YAPAYYNLGVVYSELMQYDTALGCYEKA 84 (788)
Q Consensus 20 ~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~---------------~~~~~~~lg~~~~~~g~~~~A~~~~~ka 84 (788)
....|......|+.+++.|+|..|...|+++++.-.. ...++.+++.|+.++++|.+|+..+.++
T Consensus 204 ~l~~A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kv 283 (397)
T KOG0543|consen 204 RLEAADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKV 283 (397)
T ss_pred HHHHHHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHH
Confidence 3445666788899999999999999999999876331 1347899999999999999999999999
Q ss_pred HHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHh
Q 003891 85 ALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYY 162 (788)
Q Consensus 85 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~ 162 (788)
|..+|+|..+++..|.++..+|+|+.|+..|++++++.|++..+...+..+-.... ...+...+.|.+++..
T Consensus 284 Le~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~------~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 284 LELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIR------EYEEKEKKMYANMFAK 355 (397)
T ss_pred HhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHH------HHHHHHHHHHHHHhhc
Confidence 99999999999999999999999999999999999999999877766655544432 2334446667766654
No 242
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=98.74 E-value=7.1e-09 Score=104.06 Aligned_cols=209 Identities=13% Similarity=0.053 Sum_probs=111.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhh
Q 003891 63 NLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTK 142 (788)
Q Consensus 63 ~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~~ 142 (788)
..|+-|+++|.|++|+.+|.+++..+|.++..+.+.+..|+++..|..|...++.++.++..+..++...+.+-.
T Consensus 102 E~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~----- 176 (536)
T KOG4648|consen 102 ERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARE----- 176 (536)
T ss_pred HhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHH-----
Confidence 345555555555555555555555555555555555555555555555555555555554443333322222222
Q ss_pred hhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 003891 143 VKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVE 222 (788)
Q Consensus 143 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~ 222 (788)
..|+..+|.+-++.++++.|++.+....++.+-. ..++. -+.+..| | +-+|.+
T Consensus 177 --~Lg~~~EAKkD~E~vL~LEP~~~ELkK~~a~i~S----l~E~~----I~~KsT~----------------G-~~~A~Q 229 (536)
T KOG4648|consen 177 --SLGNNMEAKKDCETVLALEPKNIELKKSLARINS----LRERK----IATKSTP----------------G-FTPARQ 229 (536)
T ss_pred --HHhhHHHHHHhHHHHHhhCcccHHHHHHHHHhcc----hHhhh----HHhhcCC----------------C-CCcccc
Confidence 2335555555555555555554333222222111 10000 0000011 1 112222
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 003891 223 CYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDS 302 (788)
Q Consensus 223 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~ 302 (788)
-..+++.+ -.-|..+...|.++.++..+..-+....++.....+ +..|.+.-++++++.-..+++..+|..
T Consensus 230 ~~~Q~l~~--------K~~G~~Fsk~~~~~~~i~~~~~~~A~~~~~~~L~~~-~~~~~KI~~~~~~~~~~~~~~~~~~s~ 300 (536)
T KOG4648|consen 230 GMIQILPI--------KKPGYKFSKKAMRSVPVVDVVSPRATIDDSNQLRIS-DEDIDKIFNSNCGIIEEVKKTNPKPTP 300 (536)
T ss_pred chhhhccc--------cCcchhhhhhhccccceeEeeccccccCccccCccc-HHHHHHHhhcchhHHHHHHhcCCCCCc
Confidence 22222211 223566788899999999998887776665555445 777888888999999988988888877
Q ss_pred hhhHHhHHHH
Q 003891 303 RNAGQNRLLA 312 (788)
Q Consensus 303 ~~a~~~~lla 312 (788)
..+...+--+
T Consensus 301 ~~~~s~~~~A 310 (536)
T KOG4648|consen 301 MPDTSGPPKA 310 (536)
T ss_pred CcccCCCchh
Confidence 6655444333
No 243
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.74 E-value=6.7e-07 Score=83.87 Aligned_cols=116 Identities=24% Similarity=0.152 Sum_probs=101.5
Q ss_pred cCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCCHHH
Q 003891 146 EGDINQGVAYYKKALYYNWHY---ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHC---AEACNNLGVIYKDRDNLDK 219 (788)
Q Consensus 146 ~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~e 219 (788)
.++..++...+++.++.+|+. ..+.+.+|.++...|++++|...|+.++...|+. ..+.+.++.++...|++++
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~ 103 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDE 103 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 678888988999999999998 4578889999999999999999999999987654 4578889999999999999
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003891 220 AVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAI 262 (788)
Q Consensus 220 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal 262 (788)
|+..++. +...+-.+.++..+|.+|...|++++|+..|++++
T Consensus 104 Al~~L~~-~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 104 ALATLQQ-IPDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHHh-ccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 9999976 33344556788899999999999999999999874
No 244
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.73 E-value=2.8e-08 Score=83.61 Aligned_cols=81 Identities=25% Similarity=0.375 Sum_probs=73.0
Q ss_pred cCChHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHH
Q 003891 37 AGNTQDGIQKYYEALKIDPH--YAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIAC 114 (788)
Q Consensus 37 ~g~~~~A~~~~~~al~~~p~--~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 114 (788)
+|++++|+..|+++++.+|. +...++.+|.++++.|+|++|+..+++ .+.++.+....+.+|.++..+|++++|++.
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 68999999999999999995 466788899999999999999999999 888888889999999999999999999999
Q ss_pred HHHH
Q 003891 115 YERC 118 (788)
Q Consensus 115 ~~~a 118 (788)
++++
T Consensus 81 l~~~ 84 (84)
T PF12895_consen 81 LEKA 84 (84)
T ss_dssp HHHH
T ss_pred HhcC
Confidence 9875
No 245
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.73 E-value=5.3e-06 Score=81.58 Aligned_cols=255 Identities=16% Similarity=0.097 Sum_probs=178.1
Q ss_pred HHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHH
Q 003891 34 LKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIA 113 (788)
Q Consensus 34 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g~~~~A~~ 113 (788)
++-.|+|.+++..-.+.-... ...+....+.+.|..+|++...+.-....- .....+...++.....-++.++-+.
T Consensus 18 ~fY~Gnyq~~ine~~~~~~~~-~~~e~d~y~~raylAlg~~~~~~~eI~~~~---~~~lqAvr~~a~~~~~e~~~~~~~~ 93 (299)
T KOG3081|consen 18 YFYLGNYQQCINEAEKFSSSK-TDVELDVYMYRAYLALGQYQIVISEIKEGK---ATPLQAVRLLAEYLELESNKKSILA 93 (299)
T ss_pred HHHhhHHHHHHHHHHhhcccc-chhHHHHHHHHHHHHccccccccccccccc---CChHHHHHHHHHHhhCcchhHHHHH
Confidence 444588888888777654433 667777888888888888876555443322 1123445555555555555555554
Q ss_pred HHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 003891 114 CYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELA 193 (788)
Q Consensus 114 ~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 193 (788)
-..+.+........ ...+..-+.++...+++++|.+...+. .+.++...--.++.++.+.+-|.+.+++.
T Consensus 94 ~l~E~~a~~~~~sn-----~i~~l~aa~i~~~~~~~deAl~~~~~~-----~~lE~~Al~VqI~lk~~r~d~A~~~lk~m 163 (299)
T KOG3081|consen 94 SLYELVADSTDGSN-----LIDLLLAAIIYMHDGDFDEALKALHLG-----ENLEAAALNVQILLKMHRFDLAEKELKKM 163 (299)
T ss_pred HHHHHHHhhccchh-----HHHHHHhhHHhhcCCChHHHHHHHhcc-----chHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44443332222111 112233356677788999999888763 34556666677888899999999999998
Q ss_pred HhcCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 003891 194 FHFNPHCAEACNNLGVIYKD----RDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYA 269 (788)
Q Consensus 194 l~~~p~~~~~~~~la~~~~~----~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~ 269 (788)
.+++.+ ..+..||..+.+ .+++.+|.-+|++.-+..+..+..+..++.+...+++|++|...++.++..+++++
T Consensus 164 q~ided--~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dp 241 (299)
T KOG3081|consen 164 QQIDED--ATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDP 241 (299)
T ss_pred HccchH--HHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCH
Confidence 887654 344445555443 35788999999999888888899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCHHHHHH-HHHHHHhhCCCChh
Q 003891 270 EAYNNLGVLYRDAGSISLAID-AYEQCLKIDPDSRN 304 (788)
Q Consensus 270 ~~~~~la~~~~~~g~~~eA~~-~~~~al~l~p~~~~ 304 (788)
+.+.++..+-...|...++.+ ...+....+|+++-
T Consensus 242 etL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h~~ 277 (299)
T KOG3081|consen 242 ETLANLIVLALHLGKDAEVTERNLSQLKLSHPEHPF 277 (299)
T ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCcchH
Confidence 999999999888888766554 45555566676543
No 246
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.73 E-value=4.2e-08 Score=78.00 Aligned_cols=64 Identities=31% Similarity=0.490 Sum_probs=45.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCh
Q 003891 240 NLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSR 303 (788)
Q Consensus 240 ~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~ 303 (788)
.+|..+...|++++|+..|+++++.+|+++.+++.+|.++..+|++++|+.+|+++++++|+++
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 4566777777777777777777777777777777777777777777777777777777777653
No 247
>PRK11906 transcriptional regulator; Provisional
Probab=98.73 E-value=3.3e-07 Score=98.05 Aligned_cols=153 Identities=14% Similarity=0.102 Sum_probs=125.6
Q ss_pred HHHHHHHHH---HcCCCChhhHHHHHHHHHHHHHHHH--HcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Q 003891 2 LVASYHKAL---SADPSYKPAAECLAIVLTDLGTSLK--LAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDT 76 (788)
Q Consensus 2 Ai~~~~kaL---~~~P~~~~a~~~la~~l~~lg~~~~--~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~ 76 (788)
|+.++.+++ ..+|+...++..+|.+++.....-. ...+..+|.+..+++++++|.++.++..+|.++...++++.
T Consensus 277 Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~~~~ 356 (458)
T PRK11906 277 AMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLSGQAKV 356 (458)
T ss_pred HHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcchhh
Confidence 678899999 9999999999999988877633111 34567789999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHH
Q 003891 77 ALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYY 156 (788)
Q Consensus 77 A~~~~~kal~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~ 156 (788)
|...|++++.++|+.+.+++..|.+....|+.++|.+.++++++++|.-..+-.. ++-.-.+.....++|++.|
T Consensus 357 a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~------~~~~~~~~~~~~~~~~~~~ 430 (458)
T PRK11906 357 SHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVI------KECVDMYVPNPLKNNIKLY 430 (458)
T ss_pred HHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHH------HHHHHHHcCCchhhhHHHH
Confidence 9999999999999999999999999999999999999999999999985432211 1111011234677788777
Q ss_pred HHHH
Q 003891 157 KKAL 160 (788)
Q Consensus 157 ~~al 160 (788)
-+-.
T Consensus 431 ~~~~ 434 (458)
T PRK11906 431 YKET 434 (458)
T ss_pred hhcc
Confidence 6543
No 248
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.72 E-value=3.3e-08 Score=83.16 Aligned_cols=81 Identities=28% Similarity=0.420 Sum_probs=54.9
Q ss_pred cCCHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 003891 214 RDNLDKAVECYQMALSIKPN--FSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDA 291 (788)
Q Consensus 214 ~g~~~eA~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~~eA~~~ 291 (788)
+|++++|+.+++++++..|. +...++.+|.+|+..|++++|+..+++ .+.++.+...++.+|.++.++|++++|++.
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 46677777777777777664 344566677777777777777777777 666666666666777777777777777777
Q ss_pred HHHH
Q 003891 292 YEQC 295 (788)
Q Consensus 292 ~~~a 295 (788)
|+++
T Consensus 81 l~~~ 84 (84)
T PF12895_consen 81 LEKA 84 (84)
T ss_dssp HHHH
T ss_pred HhcC
Confidence 7654
No 249
>PRK15331 chaperone protein SicA; Provisional
Probab=98.69 E-value=2.2e-07 Score=85.87 Aligned_cols=105 Identities=10% Similarity=0.030 Sum_probs=79.2
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 003891 197 NPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLG 276 (788)
Q Consensus 197 ~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~la 276 (788)
.++..+..+..|.-++..|++++|...|+-..-.++.+++.+..||.++..+++|++|+..|..+..++++++...+..|
T Consensus 33 s~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~ag 112 (165)
T PRK15331 33 PQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTG 112 (165)
T ss_pred CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHH
Confidence 44445666777777777777777777777777777777777777788887788888888888877777777777777888
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCC
Q 003891 277 VLYRDAGSISLAIDAYEQCLKIDPDS 302 (788)
Q Consensus 277 ~~~~~~g~~~eA~~~~~~al~l~p~~ 302 (788)
.||..+|+.++|+.+|+.+++ .|.+
T Consensus 113 qC~l~l~~~~~A~~~f~~a~~-~~~~ 137 (165)
T PRK15331 113 QCQLLMRKAAKARQCFELVNE-RTED 137 (165)
T ss_pred HHHHHhCCHHHHHHHHHHHHh-Ccch
Confidence 888888888888888777776 3443
No 250
>PLN03063 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=98.69 E-value=3.9e-07 Score=108.20 Aligned_cols=179 Identities=15% Similarity=0.069 Sum_probs=130.7
Q ss_pred CCeEEEecCCC--CcCCHHHHHHHHHHHhHcCCcE----EEEecCCC-CCHHHHHHHHHHHHHcC--CCCCc--------
Q 003891 525 GFITFGSFNNL--AKITPKVLQVWARILCAVPNSR----LVVKCKPF-CCDSVRHRFLSTLEQLG--LESLR-------- 587 (788)
Q Consensus 525 ~~~~f~~~~~~--~K~~~~~~~~~~~il~~~p~~~----l~l~~~~~-~~~~~~~~l~~~~~~~g--i~~~r-------- 587 (788)
+..++.++.|+ .|..+..+++|.++++..|+.+ |+.++.+. ...+..+.+++.+.+.+ |. .+
T Consensus 278 ~~~lIl~VgRLd~~KGi~~lL~Afe~lL~~~P~~~~kvvLvqia~psr~~~~~y~~l~~~v~~l~g~In-~~~g~~~~~p 356 (797)
T PLN03063 278 GRKVILGVDRLDMIKGIPQKYLAFEKFLEENPEWRDKVMLVQIAVPTRNDVPEYQKLKSQVHELVGRIN-GRFGSVSSVP 356 (797)
T ss_pred CCeEEEEecccccccCHHHHHHHHHHHHHhCccccCcEEEEEEecCCCCchHHHHHHHHHHHHHHHHhh-cccccCCCce
Confidence 44567788877 8999999999999999999863 44444432 23356677888887775 43 22
Q ss_pred EEEcC-CcCCcHHHHHhcccccEeecCCCC-CCchhHHHHhhhCCc----eeecCCCccCccchhHHHhhhCCcccc--c
Q 003891 588 VDLLP-LILLNHDHMQAYSLMDISLDTFPY-AGTTTTCESLYMGVP----CVTMAGSVHAHNVGVSLLTKVGLKHLI--A 659 (788)
Q Consensus 588 v~~~~-~~~~~~~~~~~~~~~Dv~Ld~~~~-~g~~t~~eal~~GvP----vvt~~g~~~~~r~~~~~l~~~gl~~~i--a 659 (788)
|++++ .++ .++..++|+.+||||-|+-+ |-+.+++|||+||+| +|. |++++.- ..+|-..++ .
T Consensus 357 v~~l~~~v~-~~el~aly~~ADvfvvtSlrEGmnLv~lEamA~g~p~~gvlVl-------Se~~G~~-~~l~~~allVnP 427 (797)
T PLN03063 357 IHHLDCSVD-FNYLCALYAITDVMLVTSLRDGMNLVSYEFVACQKAKKGVLVL-------SEFAGAG-QSLGAGALLVNP 427 (797)
T ss_pred eEEecCCCC-HHHHHHHHHhCCEEEeCccccccCcchhhHheeecCCCCCEEe-------eCCcCch-hhhcCCeEEECC
Confidence 33333 344 68999999999999999988 669999999999998 554 5444211 112333333 3
Q ss_pred CCHHHHHHHHHHHhc-CHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHHH
Q 003891 660 KNEDEYVQLALQLAS-DVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRNMWHRY 716 (788)
Q Consensus 660 ~~~~~y~~~a~~l~~-d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~ 716 (788)
.|.++..+...++.+ +++++++..+++++.+.+ +|...+++.+.+.+..++...
T Consensus 428 ~D~~~lA~AI~~aL~m~~~er~~r~~~~~~~v~~---~~~~~Wa~~fl~~l~~~~~~~ 482 (797)
T PLN03063 428 WNITEVSSAIKEALNMSDEERETRHRHNFQYVKT---HSAQKWADDFMSELNDIIVEA 482 (797)
T ss_pred CCHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhh---CCHHHHHHHHHHHHHHHhhhh
Confidence 689999998888888 777887777777777654 589999999999999998754
No 251
>cd04950 GT1_like_1 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=98.68 E-value=3e-07 Score=101.05 Aligned_cols=189 Identities=15% Similarity=0.117 Sum_probs=115.5
Q ss_pred ccceEEcCCCcc--ccCCCCCCCCCCCCCCCCCCCeEEEecCCCC-cCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHH
Q 003891 494 VEELIRLPECFL--CYTPSPEAGPVCPTPALTNGFITFGSFNNLA-KITPKVLQVWARILCAVPNSRLVVKCKPFCCDSV 570 (788)
Q Consensus 494 ~e~l~~lp~~~~--~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~-K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~ 570 (788)
.+++..+|+..- .|.+....+. .+......+.+++|.++++. |... ++..++.+..|+.+|+|+|.+... ..
T Consensus 172 ~~~i~~i~ngvd~~~f~~~~~~~~-~~~~~~~~~~~~i~y~G~l~~~~d~---~ll~~la~~~p~~~~vliG~~~~~-~~ 246 (373)
T cd04950 172 NPNVVLVPNGVDYEHFAAARDPPP-PPADLAALPRPVIGYYGAIAEWLDL---ELLEALAKARPDWSFVLIGPVDVS-ID 246 (373)
T ss_pred CCCEEEcccccCHHHhhcccccCC-ChhHHhcCCCCEEEEEeccccccCH---HHHHHHHHHCCCCEEEEECCCcCc-cC
Confidence 377888886421 1222221110 01112234566788888775 4443 455566778899999999975111 11
Q ss_pred HHHHHHHHHHcCCCCCcEEEcCCcCCcHHHHHhcccccEeecCCCC------CCchhHHHHhhhCCceeecCCCccCccc
Q 003891 571 RHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPY------AGTTTTCESLYMGVPCVTMAGSVHAHNV 644 (788)
Q Consensus 571 ~~~l~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~~Dv~Ld~~~~------~g~~t~~eal~~GvPvvt~~g~~~~~r~ 644 (788)
... + .. .++|.|+|.++ .++...+++.+||++-|+.. +.++.++|+|++|+|||+.. +
T Consensus 247 ~~~----~--~~--~~nV~~~G~~~-~~~l~~~l~~~Dv~l~P~~~~~~~~~~~P~Kl~EylA~G~PVVat~-------~ 310 (373)
T cd04950 247 PSA----L--LR--LPNVHYLGPKP-YKELPAYLAGFDVAILPFRLNELTRATSPLKLFEYLAAGKPVVATP-------L 310 (373)
T ss_pred hhH----h--cc--CCCEEEeCCCC-HHHHHHHHHhCCEEecCCccchhhhcCCcchHHHHhccCCCEEecC-------c
Confidence 111 1 11 36899999987 78899999999999998843 22567999999999999843 2
Q ss_pred hhHHHhhhCCcccccCCHHHHHHHHHHH-hcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHH
Q 003891 645 GVSLLTKVGLKHLIAKNEDEYVQLALQL-ASDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYR 710 (788)
Q Consensus 645 ~~~~l~~~gl~~~ia~~~~~y~~~a~~l-~~d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~ 710 (788)
+ .+....+..-+++.|.+++++...+. ..+...+...+. . +.+. ++++..+..+++..+
T Consensus 311 ~-~~~~~~~~~~~~~~d~~~~~~ai~~~l~~~~~~~~~~~~---~-~~~~--~sW~~~a~~~~~~l~ 370 (373)
T cd04950 311 P-EVRRYEDEVVLIADDPEEFVAAIEKALLEDGPARERRRL---R-LAAQ--NSWDARAAEMLEALQ 370 (373)
T ss_pred H-HHHhhcCcEEEeCCCHHHHHHHHHHHHhcCCchHHHHHH---H-HHHH--CCHHHHHHHHHHHHH
Confidence 2 22222232224567899999999985 444322222111 1 2222 688888888886554
No 252
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.67 E-value=7.6e-08 Score=76.48 Aligned_cols=62 Identities=34% Similarity=0.503 Sum_probs=33.3
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 003891 30 LGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMY 91 (788)
Q Consensus 30 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~ 91 (788)
+|..++..|++++|+..|+++++.+|++..+++.+|.++..+|++++|+..|+++++.+|++
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~ 64 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDN 64 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 44455555555555555555555555555555555555555555555555555555555544
No 253
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.67 E-value=6.2e-07 Score=92.04 Aligned_cols=106 Identities=25% Similarity=0.343 Sum_probs=84.5
Q ss_pred HHHHHHHHHHH-HHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHH
Q 003891 201 AEACNNLGVIY-KDRDNLDKAVECYQMALSIKPNF---SQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTY---AEAYN 273 (788)
Q Consensus 201 ~~~~~~la~~~-~~~g~~~eA~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~---~~~~~ 273 (788)
....+..+..+ .+.|+|++|+..|++.++..|++ +.+++.+|.+|+..|++++|+..|+++++..|++ +++++
T Consensus 142 e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~ 221 (263)
T PRK10803 142 ANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMF 221 (263)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHH
Confidence 45556666654 55688888888888888888877 4688888888888888888888888888887764 67888
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCChhhH
Q 003891 274 NLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAG 306 (788)
Q Consensus 274 ~la~~~~~~g~~~eA~~~~~~al~l~p~~~~a~ 306 (788)
.+|.++..+|++++|...|+++++..|+...+.
T Consensus 222 klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a~ 254 (263)
T PRK10803 222 KVGVIMQDKGDTAKAKAVYQQVIKKYPGTDGAK 254 (263)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHH
Confidence 888888888888888888888888888876553
No 254
>PRK15331 chaperone protein SicA; Provisional
Probab=98.66 E-value=3.6e-07 Score=84.45 Aligned_cols=100 Identities=14% Similarity=-0.037 Sum_probs=94.1
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC
Q 003891 26 VLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNR 105 (788)
Q Consensus 26 ~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~ 105 (788)
..+..|..++.+|++++|...|+-..-.+|.+.+.++.||.++..+++|++|+..|..+..++++++...+..|.||..+
T Consensus 39 ~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l 118 (165)
T PRK15331 39 GLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLM 118 (165)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHh
Confidence 36778889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhhCCCcH
Q 003891 106 GDLESAIACYERCLAVSPNFE 126 (788)
Q Consensus 106 g~~~~A~~~~~~al~~~p~~~ 126 (788)
|+.++|+.+|+.+++ .|.+.
T Consensus 119 ~~~~~A~~~f~~a~~-~~~~~ 138 (165)
T PRK15331 119 RKAAKARQCFELVNE-RTEDE 138 (165)
T ss_pred CCHHHHHHHHHHHHh-CcchH
Confidence 999999999999998 45543
No 255
>TIGR00215 lpxB lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA
Probab=98.65 E-value=1.4e-07 Score=103.66 Aligned_cols=250 Identities=16% Similarity=0.121 Sum_probs=140.5
Q ss_pred HHHHHHHHhCCCcEEEeCCCCCCCCcccccccCCCCeEEec------ccCCCC---CCCCCccEEEecCCCCCcCccCCC
Q 003891 423 KKVAAMVREDKIDILVELTGHTANNKLGMMACQPAPVQVTW------IGYPNT---TGLPTIDYRITDSLADPPETKQKH 493 (788)
Q Consensus 423 ~~~a~~i~~d~idilvdl~g~t~~~~~~~~a~r~Apvq~~~------~g~~~t---tg~~~~Dy~i~d~~~~p~~~~~~~ 493 (788)
.++.+.|++.++|++|=.+| .+.+-....+.|..-|-+.+ |.++.- .-....|.+++-- |....+|
T Consensus 79 ~~~~~~l~~~kPd~vi~~g~-~~~~~~~a~aa~~~gip~v~~i~P~~waw~~~~~r~l~~~~d~v~~~~----~~e~~~~ 153 (385)
T TIGR00215 79 KEVVQLAKQAKPDLLVGIDA-PDFNLTKELKKKDPGIKIIYYISPQVWAWRKWRAKKIEKATDFLLAIL----PFEKAFY 153 (385)
T ss_pred HHHHHHHHhcCCCEEEEeCC-CCccHHHHHHHhhCCCCEEEEeCCcHhhcCcchHHHHHHHHhHhhccC----CCcHHHH
Confidence 46788899999999986665 44332211122222221111 333321 2224456555432 2222223
Q ss_pred cc---ceEEcCCCccccCCC--CCCCCCCCCCCCCCCCeEEEecC--CC---CcCCHHHHHHHHHHHhHcCCcEEEEecC
Q 003891 494 VE---ELIRLPECFLCYTPS--PEAGPVCPTPALTNGFITFGSFN--NL---AKITPKVLQVWARILCAVPNSRLVVKCK 563 (788)
Q Consensus 494 ~e---~l~~lp~~~~~~~~~--~~~~~~~~~~~~~~~~~~f~~~~--~~---~K~~~~~~~~~~~il~~~p~~~l~l~~~ 563 (788)
.+ +.....+......+. +.....+...+++.+..+++.+. +. .|+.+.++++...+.+..|+.++++.+.
T Consensus 154 ~~~g~~~~~vGnPv~~~~~~~~~~~~~~r~~lgl~~~~~~Ilvl~GSR~aei~k~~~~ll~a~~~l~~~~p~~~~vi~~~ 233 (385)
T TIGR00215 154 QKKNVPCRFVGHPLLDAIPLYKPDRKSAREKLGIDHNGETLALLPGSRGSEVEKLFPLFLKAAQLLEQQEPDLRRVLPVV 233 (385)
T ss_pred HhcCCCEEEECCchhhhccccCCCHHHHHHHcCCCCCCCEEEEECCCCHHHHHHhHHHHHHHHHHHHHhCCCeEEEEEeC
Confidence 22 333333322111010 00001112345665655555442 43 4688999999889988889988866433
Q ss_pred CCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHHHHhcccccEeecCCCCCCchhHHHHhhhCCceeecCCCccCcc
Q 003891 564 PFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHN 643 (788)
Q Consensus 564 ~~~~~~~~~~l~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~~Dv~Ld~~~~~g~~t~~eal~~GvPvvt~~g~~~~~r 643 (788)
+. .....+.+..+..|.. .+|.+.+. +....|..+|+++-++ |++|+|++++|+|+|....-..-+.
T Consensus 234 ~~---~~~~~~~~~~~~~~~~-~~v~~~~~-----~~~~~l~aADl~V~~S----Gt~tlEa~a~G~P~Vv~yk~~pl~~ 300 (385)
T TIGR00215 234 NF---KRRLQFEQIKAEYGPD-LQLHLIDG-----DARKAMFAADAALLAS----GTAALEAALIKTPMVVGYRMKPLTF 300 (385)
T ss_pred Cc---hhHHHHHHHHHHhCCC-CcEEEECc-----hHHHHHHhCCEEeecC----CHHHHHHHHcCCCEEEEEcCCHHHH
Confidence 21 2344555555666665 57766543 2234778899999776 7777799999999888643222222
Q ss_pred chhHH-------------HhhhCCccccc--CCHHHHHHHHHHHhcCH----HHHHHHHHHHHHHh
Q 003891 644 VGVSL-------------LTKVGLKHLIA--KNEDEYVQLALQLASDV----TALANLRMSLRDLM 690 (788)
Q Consensus 644 ~~~~~-------------l~~~gl~~~ia--~~~~~y~~~a~~l~~d~----~~~~~~r~~~~~~~ 690 (788)
..+.. ...--.+|++- -+++...+.+.+|..|+ +.++.+++.+++..
T Consensus 301 ~~~~~~~~~~~~~~~nil~~~~~~pel~q~~~~~~~l~~~~~~ll~~~~~~~~~~~~~~~~~~~~~ 366 (385)
T TIGR00215 301 LIARRLVKTDYISLPNILANRLLVPELLQEECTPHPLAIALLLLLENGLKAYKEMHRERQFFEELR 366 (385)
T ss_pred HHHHHHHcCCeeeccHHhcCCccchhhcCCCCCHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHH
Confidence 22221 11222356663 35888999999999999 99999998887654
No 256
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.63 E-value=9.4e-07 Score=90.72 Aligned_cols=103 Identities=22% Similarity=0.267 Sum_probs=93.0
Q ss_pred HHHHHHHHHH-HHcCChHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHH
Q 003891 25 IVLTDLGTSL-KLAGNTQDGIQKYYEALKIDPHY---APAYYNLGVVYSELMQYDTALGCYEKAALERPM---YAEAYCN 97 (788)
Q Consensus 25 ~~l~~lg~~~-~~~g~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~---~~~~~~~ 97 (788)
...+..+..+ +..|+|++|+..|++.++..|+. +.+++.+|.+|+..|++++|+..|+++++..|+ .+++++.
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~k 222 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFK 222 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHH
Confidence 3456666665 56799999999999999999997 579999999999999999999999999998776 5789999
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCCCcHH
Q 003891 98 MGVIYKNRGDLESAIACYERCLAVSPNFEI 127 (788)
Q Consensus 98 la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 127 (788)
+|.++..+|++++|...|+++++..|+...
T Consensus 223 lg~~~~~~g~~~~A~~~~~~vi~~yP~s~~ 252 (263)
T PRK10803 223 VGVIMQDKGDTAKAKAVYQQVIKKYPGTDG 252 (263)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCcCCHH
Confidence 999999999999999999999999999764
No 257
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.63 E-value=8.6e-07 Score=95.61 Aligned_cols=122 Identities=23% Similarity=0.229 Sum_probs=111.0
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC
Q 003891 171 YNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGK 250 (788)
Q Consensus 171 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 250 (788)
..+-.++...++++.|++.+++..+.+|+ +...++.++...++..+|++.++++++.+|.+...+...+..+...++
T Consensus 173 ~~Ll~~l~~t~~~~~ai~lle~L~~~~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~ 249 (395)
T PF09295_consen 173 DTLLKYLSLTQRYDEAIELLEKLRERDPE---VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKK 249 (395)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHhcCCc---HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCC
Confidence 34556667778999999999999988875 566789999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003891 251 MDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQC 295 (788)
Q Consensus 251 ~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~a 295 (788)
++.|++..+++++..|++...|+.|+.+|..+|++++|+..++.+
T Consensus 250 ~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 250 YELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred HHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999877754
No 258
>cd01635 Glycosyltransferase_GTB_type Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. The structures of the formed glycoconjugates are extremely diverse, reflecting a wide range of biological functions. The members of this family share a common GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=98.62 E-value=6.3e-07 Score=90.42 Aligned_cols=105 Identities=16% Similarity=0.065 Sum_probs=80.2
Q ss_pred EEEecCCCCcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHHHHhcccc
Q 003891 528 TFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLM 607 (788)
Q Consensus 528 ~f~~~~~~~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~~~~l~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~~ 607 (788)
.+|.++. .|..+.+++++.++.++.|+.+++++|.+. ............+.. ++|.+.+.++..++....+..+
T Consensus 109 ~~g~~~~-~k~~~~~~~a~~~l~~~~~~~~~~i~G~~~----~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~ 182 (229)
T cd01635 109 FVGRLAP-EKGLDDLIEAFALLKERGPDLKLVIAGDGP----EREYLEELLAALLLL-DRVIFLGGLDPEELLALLLAAA 182 (229)
T ss_pred EEEeecc-cCCHHHHHHHHHHHHHhCCCeEEEEEeCCC----ChHHHHHHHHhcCCc-ccEEEeCCCCcHHHHHHHhhcC
Confidence 4555443 599999999999999999999999998763 223333335566776 8999999975444555555669
Q ss_pred cEeecCCCC-CCchhHHHHhhhCCceeecCCC
Q 003891 608 DISLDTFPY-AGTTTTCESLYMGVPCVTMAGS 638 (788)
Q Consensus 608 Dv~Ld~~~~-~g~~t~~eal~~GvPvvt~~g~ 638 (788)
|++|-|+.. +.+++++|||++|+|||+-...
T Consensus 183 di~l~~~~~e~~~~~~~Eam~~g~pvi~s~~~ 214 (229)
T cd01635 183 DVFVLPSLREGFGLVVLEAMACGLPVIATDVG 214 (229)
T ss_pred CEEEecccccCcChHHHHHHhCCCCEEEcCCC
Confidence 999999866 6689999999999999985544
No 259
>KOG1387 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=98.60 E-value=5.4e-07 Score=91.06 Aligned_cols=271 Identities=15% Similarity=0.178 Sum_probs=175.1
Q ss_pred HHHHHHhCCCcEEEeCCCCCCCCcccccccCCCCeE-EecccCCCCCC-------------C------------------
Q 003891 425 VAAMVREDKIDILVELTGHTANNKLGMMACQPAPVQ-VTWIGYPNTTG-------------L------------------ 472 (788)
Q Consensus 425 ~a~~i~~d~idilvdl~g~t~~~~~~~~a~r~Apvq-~~~~g~~~ttg-------------~------------------ 472 (788)
.-+.|-+--+||-||.+|+.- ..++|. |++-+- ++|.-||.-+- +
T Consensus 142 ~~Eai~r~~Pdi~IDtMGY~f--s~p~~r-~l~~~~V~aYvHYP~iS~DML~~l~qrq~s~~l~~~KlaY~rlFa~lY~~ 218 (465)
T KOG1387|consen 142 AFEAIIRFPPDIFIDTMGYPF--SYPIFR-RLRRIPVVAYVHYPTISTDMLKKLFQRQKSGILVWGKLAYWRLFALLYQS 218 (465)
T ss_pred HHHHHHhCCchheEecCCCcc--hhHHHH-HHccCceEEEEecccccHHHHHHHHhhhhcchhhhHHHHHHHHHHHHHHh
Confidence 456677888999999999985 456664 244443 45666774321 0
Q ss_pred --CCccEEEecCCCCCcCccCCCccceEEcCCCccccCCCCCCCCCCCCCC-CCCCCeEEEecC--CCCcCCHHHHHHHH
Q 003891 473 --PTIDYRITDSLADPPETKQKHVEELIRLPECFLCYTPSPEAGPVCPTPA-LTNGFITFGSFN--NLAKITPKVLQVWA 547 (788)
Q Consensus 473 --~~~Dy~i~d~~~~p~~~~~~~~e~l~~lp~~~~~~~~~~~~~~~~~~~~-~~~~~~~f~~~~--~~~K~~~~~~~~~~ 547 (788)
...|++++...- ...+--.++.--.|.+.|.|-... ......+ .....++..+.+ |+.|.++ ++++++
T Consensus 219 ~G~~ad~vm~NssW-----T~nHI~qiW~~~~~~iVyPPC~~e-~lks~~~te~~r~~~ll~l~Q~RPEKnH~-~Lql~A 291 (465)
T KOG1387|consen 219 AGSKADIVMTNSSW-----TNNHIKQIWQSNTCSIVYPPCSTE-DLKSKFGTEGERENQLLSLAQFRPEKNHK-ILQLFA 291 (465)
T ss_pred ccccceEEEecchh-----hHHHHHHHhhccceeEEcCCCCHH-HHHHHhcccCCcceEEEEEeecCcccccH-HHHHHH
Confidence 013333332100 011111122222333334332211 1000011 123334455555 7899999 888888
Q ss_pred HHHhHc------CCcEEEEecCCC--CCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHHHHhcccccEeecCCC-CCC
Q 003891 548 RILCAV------PNSRLVVKCKPF--CCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFP-YAG 618 (788)
Q Consensus 548 ~il~~~------p~~~l~l~~~~~--~~~~~~~~l~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~~Dv~Ld~~~-~~g 618 (788)
--+... ++.+|+++|.-. .+..-...|+.+.+.+.|+ +.|.|.-.+| .++....++.|-+-+.+-. ...
T Consensus 292 l~~~~~pl~a~~~~iKL~ivGScRneeD~ervk~Lkd~a~~L~i~-~~v~F~~N~P-y~~lv~lL~~a~iGvh~MwNEHF 369 (465)
T KOG1387|consen 292 LYLKNEPLEASVSPIKLIIVGSCRNEEDEERVKSLKDLAEELKIP-KHVQFEKNVP-YEKLVELLGKATIGVHTMWNEHF 369 (465)
T ss_pred HHHhcCchhhccCCceEEEEeccCChhhHHHHHHHHHHHHhcCCc-cceEEEecCC-HHHHHHHhccceeehhhhhhhhc
Confidence 666655 458899987543 2344557888999999998 7799999988 8999999999999999984 488
Q ss_pred chhHHHHhhhCC-ceeecCCCccCccchhHHHhhhC-CcccccCCHHHHHHHHHHHh-cCHHHHHHHHHHHHHHhhcCCC
Q 003891 619 TTTTCESLYMGV-PCVTMAGSVHAHNVGVSLLTKVG-LKHLIAKNEDEYVQLALQLA-SDVTALANLRMSLRDLMSKSPV 695 (788)
Q Consensus 619 ~~t~~eal~~Gv-Pvvt~~g~~~~~r~~~~~l~~~g-l~~~ia~~~~~y~~~a~~l~-~d~~~~~~~r~~~~~~~~~~~~ 695 (788)
|.+..|+|++|+ ||+--.|...-.=|. .-.| ..++.+.+.+||++..+... .|.+.|..+|...|....+
T Consensus 370 GIsVVEyMAAGlIpi~h~SgGP~lDIV~----~~~G~~tGFla~t~~EYaE~iLkIv~~~~~~r~~~r~~AR~s~~R--- 442 (465)
T KOG1387|consen 370 GISVVEYMAAGLIPIVHNSGGPLLDIVT----PWDGETTGFLAPTDEEYAEAILKIVKLNYDERNMMRRNARKSLAR--- 442 (465)
T ss_pred chhHHHHHhcCceEEEeCCCCCceeeee----ccCCccceeecCChHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHH---
Confidence 999999999995 666544432211111 1123 34688999999999998887 4677799999999987643
Q ss_pred CChHHHHHHHHHHHHHHHH
Q 003891 696 CDGQNFALGLESTYRNMWH 714 (788)
Q Consensus 696 ~~~~~~~~~~e~~~~~~~~ 714 (788)
|+...|-+.++..+..+.+
T Consensus 443 FsE~~F~kd~~~~i~kll~ 461 (465)
T KOG1387|consen 443 FGELKFDKDWENPICKLLE 461 (465)
T ss_pred hhHHHHHHhHhHHHHHhhc
Confidence 7888899998877776654
No 260
>TIGR03713 acc_sec_asp1 accessory Sec system protein Asp1. This protein is designated Asp1 because, along with SecY2, SecA2, and other proteins it is part of the accessory secretory protein system. The system is involved in the export of serine-rich glycoproteins important for virulence in a number of Gram-positive species, including Streptococcus gordonii and Staphylococcus aureus. This protein family is assigned to transport rather than glycosylation function, but the specific molecular role is unknown.
Probab=98.60 E-value=3.2e-07 Score=103.59 Aligned_cols=159 Identities=13% Similarity=0.104 Sum_probs=120.3
Q ss_pred CCcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCC----------------------------CC
Q 003891 535 LAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLE----------------------------SL 586 (788)
Q Consensus 535 ~~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~~~~l~~~~~~~gi~----------------------------~~ 586 (788)
+.|-....++++.+++..+|++.|.+.|.+.. ......+++..++.+.. .+
T Consensus 331 ~ek~~~~~I~av~~~~~~~p~~~L~~~gy~~~-~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (519)
T TIGR03713 331 SDEELQQILQQLLQYILKNPDYELKILTYNND-NDITQLLEDILEQINEEYNQDKNFFSLSEQDENQPILQTDEEQKEKE 409 (519)
T ss_pred ChHHHHHHHHHHHHHHhhCCCeEEEEEEecCc-hhHHHHHHHHHHHHHhhhchhhhccccchhhhhhhcccchhhccccc
Confidence 58999999999999999999999999886622 23445565555665554 16
Q ss_pred cEEEcCCcCCcHHHHHhcccccEeecCCCCCCchhHHHHhhhCCceeecCCCccCccchhHHHhhhCCcccccCCHHHHH
Q 003891 587 RVDLLPLILLNHDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIAKNEDEYV 666 (788)
Q Consensus 587 rv~~~~~~~~~~~~~~~~~~~Dv~Ld~~~~~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l~~~gl~~~ia~~~~~y~ 666 (788)
||.|.+... ..+....|+.+.|++|++...|-.|.+||+..|||+|-. | .+-+..-|..+.|..|.+++.
T Consensus 410 ~v~f~gy~~-e~dl~~~~~~arl~id~s~~eg~~~~ieAiS~GiPqIny-g--------~~~~V~d~~NG~li~d~~~l~ 479 (519)
T TIGR03713 410 RIAFTTLTN-EEDLISALDKLRLIIDLSKEPDLYTQISGISAGIPQINK-V--------ETDYVEHNKNGYIIDDISELL 479 (519)
T ss_pred EEEEEecCC-HHHHHHHHhhheEEEECCCCCChHHHHHHHHcCCCeeec-C--------CceeeEcCCCcEEeCCHHHHH
Confidence 999999755 458889999999999999885544999999999999921 1 112233377888889999999
Q ss_pred HHHHHHhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHH
Q 003891 667 QLALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALGLES 707 (788)
Q Consensus 667 ~~a~~l~~d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~ 707 (788)
+.++.+..|+...+++....-+.+. -|+.+....++++
T Consensus 480 ~al~~~L~~~~~wn~~~~~sy~~~~---~yS~~~i~~kW~~ 517 (519)
T TIGR03713 480 KALDYYLDNLKNWNYSLAYSIKLID---DYSSENIIERLNE 517 (519)
T ss_pred HHHHHHHhCHHHHHHHHHHHHHHHH---HhhHHHHHHHHHh
Confidence 9999999999888887777665542 3566655444443
No 261
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=98.55 E-value=3.4e-05 Score=76.49 Aligned_cols=188 Identities=21% Similarity=0.177 Sum_probs=128.4
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHH
Q 003891 23 LAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHY---APAYYNLGVVYSELMQYDTALGCYEKAALERPMYA---EAYC 96 (788)
Q Consensus 23 la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~---~~~~ 96 (788)
-+..++..|...++.|++++|+..|+.+....|.. ..+...++.++++.+++++|+...++-+.+.|.++ .+++
T Consensus 33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Y 112 (254)
T COG4105 33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYY 112 (254)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHH
Confidence 45668999999999999999999999999988764 67899999999999999999999999999988764 5677
Q ss_pred HHHHHHHHCC--------CHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHhCCCCHH
Q 003891 97 NMGVIYKNRG--------DLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYAD 168 (788)
Q Consensus 97 ~la~~~~~~g--------~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~ 168 (788)
..|.++...= -..+|+..|++.++..|+..-+..... =+..++..+ ..
T Consensus 113 lkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~------------------~i~~~~d~L------A~ 168 (254)
T COG4105 113 LKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKA------------------RIVKLNDAL------AG 168 (254)
T ss_pred HHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHH------------------HHHHHHHHH------HH
Confidence 8888876542 246788889999999998652211100 011111111 11
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 003891 169 AMYNLGVAYGEMLKFDMAIVFYELAFHFNPHC---AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNF 234 (788)
Q Consensus 169 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~ 234 (788)
--..+|..|.+.|.+..|+..++..++..|+. .+++..+..+|..+|-.++|.+.-.-.-...|++
T Consensus 169 ~Em~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~p~s 237 (254)
T COG4105 169 HEMAIARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGANYPDS 237 (254)
T ss_pred HHHHHHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCC
Confidence 12344666666666666666666666654443 4556666666666666666665443333333443
No 262
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.53 E-value=1.9e-05 Score=88.01 Aligned_cols=131 Identities=18% Similarity=0.224 Sum_probs=74.6
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc------CCCC--HH------------HHHHHHHHHHHcC-CHHHHHHH
Q 003891 165 HYADAMYNLGVAYGEMLKFDMAIVFYELAFHF------NPHC--AE------------ACNNLGVIYKDRD-NLDKAVEC 223 (788)
Q Consensus 165 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~------~p~~--~~------------~~~~la~~~~~~g-~~~eA~~~ 223 (788)
.+..+-+.+|..|...|+..+|+..|.++-.. ..++ .+ -....+..|...| +...|..+
T Consensus 965 gd~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~g~~~~~AVmL 1044 (1416)
T KOG3617|consen 965 GDKAACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEELGGYAHKAVML 1044 (1416)
T ss_pred ccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHcchhhhHHHHH
Confidence 34456677777777777777777777665432 1110 01 1111233333333 44445444
Q ss_pred HHHH------Hh-----------------hCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHH------HHh---------
Q 003891 224 YQMA------LS-----------------IKP-NFSQSLNNLGVVYTVQGKMDAAAEMIEKA------IAA--------- 264 (788)
Q Consensus 224 ~~~a------l~-----------------~~p-~~~~~~~~la~~~~~~g~~~eA~~~l~ka------l~~--------- 264 (788)
|.+| ++ +++ .++..+..-+..+....+|++|...+-.+ +.+
T Consensus 1045 YHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~~~~AlqlC~~~nv~vt 1124 (1416)
T KOG3617|consen 1045 YHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLAREFSGALQLCKNRNVRVT 1124 (1416)
T ss_pred HHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchh
Confidence 4332 11 122 45667777778888888888887765443 332
Q ss_pred -------CCC---------CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003891 265 -------NPT---------YAEAYNNLGVLYRDAGSISLAIDAYEQC 295 (788)
Q Consensus 265 -------~p~---------~~~~~~~la~~~~~~g~~~eA~~~~~~a 295 (788)
.|. ...++..+|.++.++|.|..|-+-|.+|
T Consensus 1125 ee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQA 1171 (1416)
T KOG3617|consen 1125 EEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQA 1171 (1416)
T ss_pred HHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHHhhh
Confidence 111 0346677888888888888887777665
No 263
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.52 E-value=2.2e-05 Score=77.36 Aligned_cols=234 Identities=17% Similarity=0.084 Sum_probs=168.7
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhh
Q 003891 65 GVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVK 144 (788)
Q Consensus 65 g~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~ 144 (788)
.+-++..|+|..++..-++.-... ...+....+.+.|..+|++..-+.-....- .|. ..+...++....
T Consensus 15 iRn~fY~Gnyq~~ine~~~~~~~~-~~~e~d~y~~raylAlg~~~~~~~eI~~~~--~~~--------lqAvr~~a~~~~ 83 (299)
T KOG3081|consen 15 IRNYFYLGNYQQCINEAEKFSSSK-TDVELDVYMYRAYLALGQYQIVISEIKEGK--ATP--------LQAVRLLAEYLE 83 (299)
T ss_pred HHHHHHhhHHHHHHHHHHhhcccc-chhHHHHHHHHHHHHccccccccccccccc--CCh--------HHHHHHHHHHhh
Confidence 345667899999988887765443 667788888899999998876554433321 111 112223333333
Q ss_pred hcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 003891 145 LEGDINQGVAYYKKALYYN--WHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVE 222 (788)
Q Consensus 145 ~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~ 222 (788)
..++.++-+.-..+.+... ..+.-....-+.++...+++++|++..... .+.++...--.++.+..+.+-|.+
T Consensus 84 ~e~~~~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~-----~~lE~~Al~VqI~lk~~r~d~A~~ 158 (299)
T KOG3081|consen 84 LESNKKSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLG-----ENLEAAALNVQILLKMHRFDLAEK 158 (299)
T ss_pred CcchhHHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhcc-----chHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445454444444433322 223345566688999999999999988763 345666666788889999999999
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 003891 223 CYQMALSIKPNFSQSLNNLGVVYTV----QGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKI 298 (788)
Q Consensus 223 ~~~~al~~~p~~~~~~~~la~~~~~----~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l 298 (788)
.++++.+++.+ ..+..||..+.+ .+++.+|.-+|+..-+..|..+.....++.+...+|++++|...++.++..
T Consensus 159 ~lk~mq~ided--~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~k 236 (299)
T KOG3081|consen 159 ELKKMQQIDED--ATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDK 236 (299)
T ss_pred HHHHHHccchH--HHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 99999887654 445555555543 357899999999999988888999999999999999999999999999999
Q ss_pred CCCChhhHHhHHHHhhhc
Q 003891 299 DPDSRNAGQNRLLAMNYI 316 (788)
Q Consensus 299 ~p~~~~a~~~~lla~~~l 316 (788)
++++++...|+..+..+.
T Consensus 237 d~~dpetL~Nliv~a~~~ 254 (299)
T KOG3081|consen 237 DAKDPETLANLIVLALHL 254 (299)
T ss_pred cCCCHHHHHHHHHHHHHh
Confidence 999999999976655443
No 264
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.52 E-value=2.5e-06 Score=92.03 Aligned_cols=117 Identities=17% Similarity=0.143 Sum_probs=108.2
Q ss_pred hhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHH
Q 003891 142 KVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAV 221 (788)
Q Consensus 142 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~ 221 (788)
.....+++++|++.+++..+.+|+ +...++.++...++..+|++.+.++++.+|.+...+...+..+...++++.|+
T Consensus 178 ~l~~t~~~~~ai~lle~L~~~~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~lAL 254 (395)
T PF09295_consen 178 YLSLTQRYDEAIELLEKLRERDPE---VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYELAL 254 (395)
T ss_pred HHhhcccHHHHHHHHHHHHhcCCc---HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHH
Confidence 344567999999999999988865 66778999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003891 222 ECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKA 261 (788)
Q Consensus 222 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~ka 261 (788)
++.+++.+..|++...|..|+.+|...|++++|+..++.+
T Consensus 255 ~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 255 EIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred HHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 9999999999999999999999999999999999887755
No 265
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.47 E-value=0.00039 Score=79.23 Aligned_cols=226 Identities=13% Similarity=0.030 Sum_probs=164.2
Q ss_pred HHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHH
Q 003891 35 KLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIAC 114 (788)
Q Consensus 35 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 114 (788)
...+++.+|.+...+.++..|+...+....|.++.++|+.++|..+++..-...+++...+..+-.+|..++++++|..+
T Consensus 20 ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~ 99 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHL 99 (932)
T ss_pred hhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHH
Confidence 45689999999999999999999999999999999999999999888888778888889999999999999999999999
Q ss_pred HHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHH-HHHHHHHHHHcCChH---------
Q 003891 115 YERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADA-MYNLGVAYGEMLKFD--------- 184 (788)
Q Consensus 115 ~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~-~~~la~~~~~~g~~~--------- 184 (788)
|++++..+|+ .+....+-.++.. .++|.+-.+.--+..+..|+++.. |..+..+.......+
T Consensus 100 Ye~~~~~~P~-eell~~lFmayvR-------~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~ 171 (932)
T KOG2053|consen 100 YERANQKYPS-EELLYHLFMAYVR-------EKSYKKQQKAALQLYKNFPKRAYYFWSVISLILQSIFSENELLDPILLA 171 (932)
T ss_pred HHHHHhhCCc-HHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHhccCCcccccchhHH
Confidence 9999999999 5555444444444 335555444444444567776654 333344443333333
Q ss_pred HHHHHHHHHHhcC-CCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHH--hhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 003891 185 MAIVFYELAFHFN-PHCA-EACNNLGVIYKDRDNLDKAVECYQMAL--SIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEK 260 (788)
Q Consensus 185 ~A~~~~~~al~~~-p~~~-~~~~~la~~~~~~g~~~eA~~~~~~al--~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~k 260 (788)
-|....++.++.. +-.. .=....-.++..+|++++|.+.+..-+ ...+.+..........+...+++.+-.+...+
T Consensus 172 LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~ 251 (932)
T KOG2053|consen 172 LAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSR 251 (932)
T ss_pred HHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHH
Confidence 3445555555554 2211 112223356677899999999984332 33344455555667778889999999999999
Q ss_pred HHHhCCCC
Q 003891 261 AIAANPTY 268 (788)
Q Consensus 261 al~~~p~~ 268 (788)
++..++++
T Consensus 252 Ll~k~~Dd 259 (932)
T KOG2053|consen 252 LLEKGNDD 259 (932)
T ss_pred HHHhCCcc
Confidence 99998887
No 266
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.47 E-value=3.9e-06 Score=74.82 Aligned_cols=93 Identities=20% Similarity=0.186 Sum_probs=44.4
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC---CHHHHHHHHH
Q 003891 170 MYNLGVAYGEMLKFDMAIVFYELAFHFNPHC---AEACNNLGVIYKDRDNLDKAVECYQMALSIKPN---FSQSLNNLGV 243 (788)
Q Consensus 170 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~---~~~~~~~la~ 243 (788)
.+.+|.++-..|+.++|+.+|++++...... ..++..+|..+...|++++|+..+++++...|+ +......++.
T Consensus 4 ~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al 83 (120)
T PF12688_consen 4 LYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLAL 83 (120)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHH
Confidence 3444455555555555555555554432221 334444555555555555555555555544444 3344444444
Q ss_pred HHHHcCCHHHHHHHHHHHH
Q 003891 244 VYTVQGKMDAAAEMIEKAI 262 (788)
Q Consensus 244 ~~~~~g~~~eA~~~l~kal 262 (788)
++...|++++|++.+-.++
T Consensus 84 ~L~~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 84 ALYNLGRPKEALEWLLEAL 102 (120)
T ss_pred HHHHCCCHHHHHHHHHHHH
Confidence 5555555555555444443
No 267
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.46 E-value=3.1e-05 Score=86.33 Aligned_cols=173 Identities=18% Similarity=0.200 Sum_probs=119.3
Q ss_pred HHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHH
Q 003891 34 LKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIA 113 (788)
Q Consensus 34 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g~~~~A~~ 113 (788)
....|-.++|..+|.+.-.. -.+-..|...|.+++|.+..+.--.+ ..-..|++.+..+...++.+.|++
T Consensus 810 AieLgMlEeA~~lYr~ckR~--------DLlNKlyQs~g~w~eA~eiAE~~DRi--HLr~Tyy~yA~~Lear~Di~~Ale 879 (1416)
T KOG3617|consen 810 AIELGMLEEALILYRQCKRY--------DLLNKLYQSQGMWSEAFEIAETKDRI--HLRNTYYNYAKYLEARRDIEAALE 879 (1416)
T ss_pred HHHHhhHHHHHHHHHHHHHH--------HHHHHHHHhcccHHHHHHHHhhccce--ehhhhHHHHHHHHHhhccHHHHHH
Confidence 34557788899888886542 34566788889999988876543221 234678999999999999999999
Q ss_pred HHHHHH----------hhCCCcHHHHHHH---HHHHHHhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 003891 114 CYERCL----------AVSPNFEIAKNNM---AIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEM 180 (788)
Q Consensus 114 ~~~~al----------~~~p~~~~~~~~l---a~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 180 (788)
+|+++- .-+|...+.+.+. -..|...|......|+.+.|+.+|..+- -|+.+..+..-+
T Consensus 880 yyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~--------D~fs~VrI~C~q 951 (1416)
T KOG3617|consen 880 YYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAK--------DYFSMVRIKCIQ 951 (1416)
T ss_pred HHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhh--------hhhhheeeEeec
Confidence 999862 2223222111111 1234445555666777777777777653 355666677777
Q ss_pred CChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 003891 181 LKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALS 229 (788)
Q Consensus 181 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~ 229 (788)
|+.++|-.+-++ ..+..+.+.+|..|...|+..+|+..|.+|-.
T Consensus 952 Gk~~kAa~iA~e-----sgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqa 995 (1416)
T KOG3617|consen 952 GKTDKAARIAEE-----SGDKAACYHLARMYENDGDVVKAVKFFTRAQA 995 (1416)
T ss_pred cCchHHHHHHHh-----cccHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 777777665554 35677889999999999999999999887643
No 268
>KOG0853 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=98.45 E-value=3.1e-06 Score=92.19 Aligned_cols=181 Identities=18% Similarity=0.128 Sum_probs=131.9
Q ss_pred CCCCCCCeEEEecCCC--CcCCHHHHHHHHHHHhHc-----CCcEEEEecC-CCC-----CHHHHHHHHHHHHHcCCCCC
Q 003891 520 PALTNGFITFGSFNNL--AKITPKVLQVWARILCAV-----PNSRLVVKCK-PFC-----CDSVRHRFLSTLEQLGLESL 586 (788)
Q Consensus 520 ~~~~~~~~~f~~~~~~--~K~~~~~~~~~~~il~~~-----p~~~l~l~~~-~~~-----~~~~~~~l~~~~~~~gi~~~ 586 (788)
.+..+..+.|.++|+. -|...-.+..+.+..... +.-++.+.|. |.. .-.....+++.+++.++..+
T Consensus 267 ~~v~~~d~~~~siN~~~pgkd~~l~l~a~~~~~~~i~~~~~~~~hl~~~g~~G~d~~~sen~~~~~el~~lie~~~l~g~ 346 (495)
T KOG0853|consen 267 RGVSGIDRFFPSINRFEPGKDQDLALPAFTLLHDSIPEPSISSEHLVVAGSRGYDERDSENVEYLKELLSLIEEYDLLGQ 346 (495)
T ss_pred eeecccceEeeeeeecCCCCCceeehhhHHhhhcccCCCCCCceEEEEecCCCccccchhhHHHHHHHHHHHHHhCccCc
Confidence 3556667789999965 677767777777777766 4556666652 222 11345678889999999768
Q ss_pred cEEEcCCcCCcHHHHHhcccccEeecCCCC-CCchhHHHHhhhCCceeecC-CCccCccchhHHHhhhCCccc-ccCCHH
Q 003891 587 RVDLLPLILLNHDHMQAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMA-GSVHAHNVGVSLLTKVGLKHL-IAKNED 663 (788)
Q Consensus 587 rv~~~~~~~~~~~~~~~~~~~Dv~Ld~~~~-~g~~t~~eal~~GvPvvt~~-g~~~~~r~~~~~l~~~gl~~~-ia~~~~ 663 (788)
.+.|++... +.+-..++..+...+-+... ..|.|++|||++|+|||+.. |.+.-.-+. |..+| +..+.+
T Consensus 347 ~v~~~~s~~-~~~~yrl~adt~~v~~qPa~E~FGiv~IEAMa~glPvvAt~~GGP~EiV~~-------~~tG~l~dp~~e 418 (495)
T KOG0853|consen 347 FVWFLPSTT-RVAKYRLAADTKGVLYQPANEHFGIVPIEAMACGLPVVATNNGGPAEIVVH-------GVTGLLIDPGQE 418 (495)
T ss_pred eEEEecCCc-hHHHHHHHHhcceEEecCCCCCccceeHHHHhcCCCEEEecCCCceEEEEc-------CCcceeeCCchH
Confidence 899988876 45556677778888888766 88999999999999999654 433222111 44343 334555
Q ss_pred ---HHHHHHHHHhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHH
Q 003891 664 ---EYVQLALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYR 710 (788)
Q Consensus 664 ---~y~~~a~~l~~d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~ 710 (788)
.+.+..+++.+||+.+.+++++.++++.+. |++..|..++.+...
T Consensus 419 ~~~~~a~~~~kl~~~p~l~~~~~~~G~~rV~e~--fs~~~~~~ri~~~~~ 466 (495)
T KOG0853|consen 419 AVAELADALLKLRRDPELWARMGKNGLKRVKEM--FSWQHYSERIASVLG 466 (495)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH--HhHHHHHHHHHHHhH
Confidence 599999999999999999999999999765 778777777777665
No 269
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.45 E-value=1.8e-06 Score=80.91 Aligned_cols=104 Identities=27% Similarity=0.321 Sum_probs=87.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH-----HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 003891 205 NNLGVIYKDRDNLDKAVECYQMALSIKPNFSQ-----SLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLY 279 (788)
Q Consensus 205 ~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~-----~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~ 279 (788)
-.-|.-++..|+|++|..-|..|+...|..+. .|.+.|.++.+++.++.|++...++++++|.+..++...|.+|
T Consensus 99 K~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeay 178 (271)
T KOG4234|consen 99 KKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAY 178 (271)
T ss_pred HHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHH
Confidence 34466677788888888888888888776543 6778888899999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHhhCCCChhhHHh
Q 003891 280 RDAGSISLAIDAYEQCLKIDPDSRNAGQN 308 (788)
Q Consensus 280 ~~~g~~~eA~~~~~~al~l~p~~~~a~~~ 308 (788)
.++..+++|++-|++.++++|....++..
T Consensus 179 ek~ek~eealeDyKki~E~dPs~~ear~~ 207 (271)
T KOG4234|consen 179 EKMEKYEEALEDYKKILESDPSRREAREA 207 (271)
T ss_pred HhhhhHHHHHHHHHHHHHhCcchHHHHHH
Confidence 99999999999999999999998877654
No 270
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=98.45 E-value=0.00078 Score=69.86 Aligned_cols=295 Identities=18% Similarity=0.078 Sum_probs=203.6
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCC
Q 003891 30 LGTSLKLAGNTQDGIQKYYEALKIDPHY--APAYYNLGVVYSELMQYDTALGCYEKAALERPM-YAEAYCNMGVIYKNRG 106 (788)
Q Consensus 30 lg~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~-~~~~~~~la~~~~~~g 106 (788)
.|.+....|+-..|.+.-.++-++-..+ +-++..-++.-.-.|+++.|.+-|+.++. +|+ ..-.+..|-.--...|
T Consensus 90 tGliAagAGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~-dPEtRllGLRgLyleAqr~G 168 (531)
T COG3898 90 TGLIAAGAGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD-DPETRLLGLRGLYLEAQRLG 168 (531)
T ss_pred hhhhhhccCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc-ChHHHHHhHHHHHHHHHhcc
Confidence 3555666788889999888877554443 44556667788889999999999998875 333 2222333333445689
Q ss_pred CHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHhC---CCCHH---HHHHHHHHH-HH
Q 003891 107 DLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYN---WHYAD---AMYNLGVAY-GE 179 (788)
Q Consensus 107 ~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~---p~~~~---~~~~la~~~-~~ 179 (788)
..+.|+.|-+++-...|....++...-.. ....|+++.|+++.+...... ++-.+ +...-+... ..
T Consensus 169 areaAr~yAe~Aa~~Ap~l~WA~~AtLe~-------r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~l 241 (531)
T COG3898 169 AREAARHYAERAAEKAPQLPWAARATLEA-------RCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLL 241 (531)
T ss_pred cHHHHHHHHHHHHhhccCCchHHHHHHHH-------HHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHh
Confidence 99999999999999999987554433222 334789999999998766432 22211 111112221 23
Q ss_pred cCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 003891 180 MLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIE 259 (788)
Q Consensus 180 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~ 259 (788)
.-+...|...-.++.++.|+...+-..-+..+++.|+..++-++++.+.+..|.- + ++.+|....--+.++.-++
T Consensus 242 dadp~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP-~----ia~lY~~ar~gdta~dRlk 316 (531)
T COG3898 242 DADPASARDDALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHP-D----IALLYVRARSGDTALDRLK 316 (531)
T ss_pred cCChHHHHHHHHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCCh-H----HHHHHHHhcCCCcHHHHHH
Confidence 3468889999999999999999999999999999999999999999999998863 2 3334444333334444444
Q ss_pred ---HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhhHHhHHHHhhhc-cCCCchHHHHHHHHHHHHH
Q 003891 260 ---KAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYI-NEGHDDKLFEAHRDWGKRF 335 (788)
Q Consensus 260 ---kal~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~a~~~~lla~~~l-~~g~~~~~~~~~~~~~~~~ 335 (788)
+...+.|++.+..+..+..-..-|++..|...-+.+....|... ..++++..-- +.|+..+ .|.|..+-
T Consensus 317 Ra~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pres---~~lLlAdIeeAetGDqg~----vR~wlAqa 389 (531)
T COG3898 317 RAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPRES---AYLLLADIEEAETGDQGK----VRQWLAQA 389 (531)
T ss_pred HHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCchhh---HHHHHHHHHhhccCchHH----HHHHHHHH
Confidence 44556899999999999999999999999999999999888632 2334443322 3355544 34555442
Q ss_pred hhhccCCCCC
Q 003891 336 MRLYSQYTSW 345 (788)
Q Consensus 336 ~~~~~~~~~~ 345 (788)
.+ .|+.|.|
T Consensus 390 v~-APrdPaW 398 (531)
T COG3898 390 VK-APRDPAW 398 (531)
T ss_pred hc-CCCCCcc
Confidence 21 3444555
No 271
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.44 E-value=4.3e-06 Score=78.49 Aligned_cols=116 Identities=25% Similarity=0.274 Sum_probs=102.3
Q ss_pred ChhhHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 003891 16 YKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHY-----APAYYNLGVVYSELMQYDTALGCYEKAALERPM 90 (788)
Q Consensus 16 ~~~a~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~ 90 (788)
..+.....+.-+..-|.-++..|+|++|...|..+|...|.. .-.|.+.|.++++++.++.|+..+.++++++|.
T Consensus 87 ek~k~~~kad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pt 166 (271)
T KOG4234|consen 87 EKDKAIEKADSLKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPT 166 (271)
T ss_pred HHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCch
Confidence 334444556667788999999999999999999999999875 346788999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHH
Q 003891 91 YAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNN 131 (788)
Q Consensus 91 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 131 (788)
+..++...|.+|.++..+++|++-|++.++.+|....+...
T Consensus 167 y~kAl~RRAeayek~ek~eealeDyKki~E~dPs~~ear~~ 207 (271)
T KOG4234|consen 167 YEKALERRAEAYEKMEKYEEALEDYKKILESDPSRREAREA 207 (271)
T ss_pred hHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCcchHHHHHH
Confidence 99999999999999999999999999999999987655433
No 272
>COG0438 RfaG Glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=98.42 E-value=1.1e-05 Score=86.70 Aligned_cols=176 Identities=15% Similarity=0.110 Sum_probs=127.1
Q ss_pred eEEEecCCC--CcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHHHHhc
Q 003891 527 ITFGSFNNL--AKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAY 604 (788)
Q Consensus 527 ~~f~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~~~~l~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~ 604 (788)
+++.++++. .|..+.+++++..+....|+..++++|.+... ...+...+...+.. +.+.|.|.++ ..+....+
T Consensus 200 ~~i~~~g~~~~~k~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~---~~~~~~~~~~~~~~-~~v~~~g~~~-~~~~~~~~ 274 (381)
T COG0438 200 FVVLYVGRLDPEKGLDLLIEAAAKLKKRGPDIKLVIVGDGPER---REELEKLAKKLGLE-DNVKFLGYVP-DEELAELL 274 (381)
T ss_pred eEEEEeeccChhcCHHHHHHHHHHhhhhcCCeEEEEEcCCCcc---HHHHHHHHHHhCCC-CcEEEecccC-HHHHHHHH
Confidence 456666654 68889999999999888888888888876322 34555567777775 7899999877 45677788
Q ss_pred ccccEeecCCCC-CCchhHHHHhhhCCceeecCCCccCccchhHHHhhhCCcccccC-CHHHHHHHHHHHhcCHHHHHHH
Q 003891 605 SLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIAK-NEDEYVQLALQLASDVTALANL 682 (788)
Q Consensus 605 ~~~Dv~Ld~~~~-~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l~~~gl~~~ia~-~~~~y~~~a~~l~~d~~~~~~~ 682 (788)
..+|+++-|+.+ +.|.+++|||++|+|||+........ ++...+..-++.. +.++++.....+..+.+.++.+
T Consensus 275 ~~~~~~v~ps~~e~~~~~~~Ea~a~g~pvi~~~~~~~~e-----~~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 349 (381)
T COG0438 275 ASADVFVLPSLSEGFGLVLLEAMAAGTPVIASDVGGIPE-----VVEDGETGLLVPPGDVEELADALEQLLEDPELREEL 349 (381)
T ss_pred HhCCEEEeccccccchHHHHHHHhcCCcEEECCCCChHH-----HhcCCCceEecCCCCHHHHHHHHHHHhcCHHHHHHH
Confidence 889999999876 67888999999999999843322211 2222210112332 5899999999999999777777
Q ss_pred HHHHHHHhhcCCCCChHHHHHHHHHHHHHHHH
Q 003891 683 RMSLRDLMSKSPVCDGQNFALGLESTYRNMWH 714 (788)
Q Consensus 683 r~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~ 714 (788)
....++... ..|+++.++..+++.|.....
T Consensus 350 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 379 (381)
T COG0438 350 GEAARERVE--EEFSWERIAEQLLELYEELLA 379 (381)
T ss_pred HHHHHHHHH--HhcCHHHHHHHHHHHHHHHHh
Confidence 765555443 458999999888888877654
No 273
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.42 E-value=0.00056 Score=78.01 Aligned_cols=285 Identities=14% Similarity=0.039 Sum_probs=186.6
Q ss_pred HHHHHHHHHHcCCCChhhHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 003891 2 LVASYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCY 81 (788)
Q Consensus 2 Ai~~~~kaL~~~P~~~~a~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 81 (788)
|++...+.++..|+..-+ ....|..+.+.|+.++|..+++..-...+++...+-.+-.+|..++++++|..+|
T Consensus 28 al~~~~kllkk~Pn~~~a-------~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Y 100 (932)
T KOG2053|consen 28 ALAKLGKLLKKHPNALYA-------KVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHLY 100 (932)
T ss_pred HHHHHHHHHHHCCCcHHH-------HHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHHH
Confidence 677788889999987666 3445666778899999998888877778888889999999999999999999999
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhc----CCHHHHHHHHH
Q 003891 82 EKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLE----GDINQGVAYYK 157 (788)
Q Consensus 82 ~kal~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~----g~~~~A~~~~~ 157 (788)
++++..+|. .+.++.+-.+|.+.++|.+-.+.--+..+..|+.+........ +...+.--... --..-|...++
T Consensus 101 e~~~~~~P~-eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~S-lilqs~~~~~~~~~~i~l~LA~~m~~ 178 (932)
T KOG2053|consen 101 ERANQKYPS-EELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVIS-LILQSIFSENELLDPILLALAEKMVQ 178 (932)
T ss_pred HHHHhhCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHH-HHHHhccCCcccccchhHHHHHHHHH
Confidence 999999999 8888888899999999888777666666777876633222211 11111100000 11234555666
Q ss_pred HHHHhC-CCCHH-HHHHHHHHHHHcCChHHHHHHHHHH-H-hcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 003891 158 KALYYN-WHYAD-AMYNLGVAYGEMLKFDMAIVFYELA-F-HFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPN 233 (788)
Q Consensus 158 ~al~~~-p~~~~-~~~~la~~~~~~g~~~~A~~~~~~a-l-~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~ 233 (788)
+.++.. +-... -....-.++..+|++++|.+.+..- . ...+.+...-......+...+++.+-.+...+++...++
T Consensus 179 ~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~~D 258 (932)
T KOG2053|consen 179 KLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKGND 258 (932)
T ss_pred HHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhCCc
Confidence 666655 22211 1222335667889999999998433 2 334445555566778888899999999999999999888
Q ss_pred CHHHHHH-HH------------HHHHHcCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003891 234 FSQSLNN-LG------------VVYTVQGKMDAAAEMIEKAIAANPTYA-EAYNNLGVLYRDAGSISLAIDAYEQC 295 (788)
Q Consensus 234 ~~~~~~~-la------------~~~~~~g~~~eA~~~l~kal~~~p~~~-~~~~~la~~~~~~g~~~eA~~~~~~a 295 (788)
+...+.. .- ..+...+..+..++..++.+.-+...+ -+++.+-.-+...|+.+++.-.|-+-
T Consensus 259 dy~~~~~sv~klLe~~~~~~a~~~~s~~~~l~~~~ek~~~~i~~~~Rgp~LA~lel~kr~~~~gd~ee~~~~y~~k 334 (932)
T KOG2053|consen 259 DYKIYTDSVFKLLELLNKEPAEAAHSLSKSLDECIEKAQKNIGSKSRGPYLARLELDKRYKLIGDSEEMLSYYFKK 334 (932)
T ss_pred chHHHHHHHHHHHHhcccccchhhhhhhhhHHHHHHHHHHhhcccccCcHHHHHHHHHHhcccCChHHHHHHHHHH
Confidence 7222111 11 112222334444444455444422222 23334444445668888876665443
No 274
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.41 E-value=5.8e-06 Score=73.75 Aligned_cols=96 Identities=20% Similarity=0.191 Sum_probs=86.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHH
Q 003891 202 EACNNLGVIYKDRDNLDKAVECYQMALSIKPNF---SQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPT---YAEAYNNL 275 (788)
Q Consensus 202 ~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~---~~~~~~~l 275 (788)
.+++.+|.++-..|+.++|+.+|++++...... ..++..+|..+...|++++|+..+++++...|+ +......+
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~ 81 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFL 81 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHH
Confidence 467899999999999999999999999975444 458999999999999999999999999999888 77888889
Q ss_pred HHHHHHcCCHHHHHHHHHHHHh
Q 003891 276 GVLYRDAGSISLAIDAYEQCLK 297 (788)
Q Consensus 276 a~~~~~~g~~~eA~~~~~~al~ 297 (788)
+.++...|+.++|+..+-.++.
T Consensus 82 Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 82 ALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 9999999999999999988775
No 275
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=98.41 E-value=5e-05 Score=75.33 Aligned_cols=192 Identities=19% Similarity=0.188 Sum_probs=142.5
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHH
Q 003891 57 YAPAYYNLGVVYSELMQYDTALGCYEKAALERPMY---AEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMA 133 (788)
Q Consensus 57 ~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 133 (788)
.+..++.-|...++.|++++|+..|+++....|.. ..+...++.++++.+++++|+...++.+.+.|.++.+-
T Consensus 33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~d---- 108 (254)
T COG4105 33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNAD---- 108 (254)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChh----
Confidence 47789999999999999999999999999987764 67899999999999999999999999999999987542
Q ss_pred HHHHHhhhhh--------hhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHH
Q 003891 134 IALTDLGTKV--------KLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACN 205 (788)
Q Consensus 134 ~~l~~lg~~~--------~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 205 (788)
.+++..|..+ ..+.-..+|+..++..+...|+..-+-.....+ ..++.. ...--.
T Consensus 109 Y~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i-----------~~~~d~------LA~~Em 171 (254)
T COG4105 109 YAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARI-----------VKLNDA------LAGHEM 171 (254)
T ss_pred HHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHH-----------HHHHHH------HHHHHH
Confidence 2233333222 222335677788888888888764322111111 111111 123335
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 003891 206 NLGVIYKDRDNLDKAVECYQMALSIKPNF---SQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYA 269 (788)
Q Consensus 206 ~la~~~~~~g~~~eA~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~ 269 (788)
.+|..|.+.|.+..|+..++++++..|+. .+++..+..+|..+|-.++|.+.-+-.-...|++.
T Consensus 172 ~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~p~s~ 238 (254)
T COG4105 172 AIARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGANYPDSQ 238 (254)
T ss_pred HHHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCc
Confidence 67899999999999999999999987665 45888899999999999999887655555556654
No 276
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.40 E-value=6.5e-06 Score=82.33 Aligned_cols=103 Identities=22% Similarity=0.313 Sum_probs=95.7
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHH
Q 003891 27 LTDLGTSLKLAGNTQDGIQKYYEALKIDPHY---APAYYNLGVVYSELMQYDTALGCYEKAALERPM---YAEAYCNMGV 100 (788)
Q Consensus 27 l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~---~~~~~~~la~ 100 (788)
+++.+..++..|+|.+|...|.+-++..|+. +.++|.||.+++.+|+|++|...|..+.+..|+ -+++++.+|.
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~ 223 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV 223 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence 7888999999999999999999999999885 789999999999999999999999999998776 4789999999
Q ss_pred HHHHCCCHHHHHHHHHHHHhhCCCcHHHH
Q 003891 101 IYKNRGDLESAIACYERCLAVSPNFEIAK 129 (788)
Q Consensus 101 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 129 (788)
+...+|+.++|...|+++++..|+...+.
T Consensus 224 ~~~~l~~~d~A~atl~qv~k~YP~t~aA~ 252 (262)
T COG1729 224 SLGRLGNTDEACATLQQVIKRYPGTDAAK 252 (262)
T ss_pred HHHHhcCHHHHHHHHHHHHHHCCCCHHHH
Confidence 99999999999999999999999987543
No 277
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.40 E-value=8.2e-07 Score=71.17 Aligned_cols=66 Identities=23% Similarity=0.206 Sum_probs=41.8
Q ss_pred HHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 003891 35 KLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGV 100 (788)
Q Consensus 35 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~ 100 (788)
...|++++|++.|+++++.+|++..+++.+|.+|...|++++|...+++++..+|+++..+..++.
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~ 67 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQ 67 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhc
Confidence 345666666666666666666666666666666666666666666666666666666555555443
No 278
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.40 E-value=3.7e-05 Score=74.16 Aligned_cols=106 Identities=15% Similarity=0.211 Sum_probs=67.1
Q ss_pred HHHHHHHHc-CCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-------HH
Q 003891 206 NLGVIYKDR-DNLDKAVECYQMALSIKPNF------SQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYA-------EA 271 (788)
Q Consensus 206 ~la~~~~~~-g~~~eA~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~-------~~ 271 (788)
.+|.+|..- .++++|+.+|+++-+..... ...+...+..-...++|.+|+..|++.....-++. ..
T Consensus 118 ~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~Kdy 197 (288)
T KOG1586|consen 118 EIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDY 197 (288)
T ss_pred hHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHH
Confidence 344444432 55666666666655443221 12444555556667778888888877766544432 34
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhhHHhHHH
Q 003891 272 YNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLL 311 (788)
Q Consensus 272 ~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~a~~~~ll 311 (788)
++.-|.|+....+.-.+...+++..+++|...+.+-..++
T Consensus 198 flkAgLChl~~~D~v~a~~ALeky~~~dP~F~dsREckfl 237 (288)
T KOG1586|consen 198 FLKAGLCHLCKADEVNAQRALEKYQELDPAFTDSRECKFL 237 (288)
T ss_pred HHHHHHHhHhcccHHHHHHHHHHHHhcCCcccccHHHHHH
Confidence 5566777777788888888888888899988777665444
No 279
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.39 E-value=5.7e-06 Score=82.74 Aligned_cols=104 Identities=21% Similarity=0.249 Sum_probs=79.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHH
Q 003891 204 CNNLGVIYKDRDNLDKAVECYQMALSIKPNF---SQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTY---AEAYNNLGV 277 (788)
Q Consensus 204 ~~~la~~~~~~g~~~eA~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~---~~~~~~la~ 277 (788)
.++.|.-++..|+|.+|...|..-++..|+. +++++.||.+++.+|++++|...|..+.+..|+. +++++.+|.
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~ 223 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV 223 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence 5666667777777777777777777777765 5577778888888888888888888777776655 677888888
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCChhhHH
Q 003891 278 LYRDAGSISLAIDAYEQCLKIDPDSRNAGQ 307 (788)
Q Consensus 278 ~~~~~g~~~eA~~~~~~al~l~p~~~~a~~ 307 (788)
+...+|+.++|...|+++++..|+...+..
T Consensus 224 ~~~~l~~~d~A~atl~qv~k~YP~t~aA~~ 253 (262)
T COG1729 224 SLGRLGNTDEACATLQQVIKRYPGTDAAKL 253 (262)
T ss_pred HHHHhcCHHHHHHHHHHHHHHCCCCHHHHH
Confidence 888888888888888888888887766543
No 280
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.39 E-value=1e-06 Score=70.64 Aligned_cols=54 Identities=41% Similarity=0.514 Sum_probs=23.6
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 003891 248 QGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPD 301 (788)
Q Consensus 248 ~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~ 301 (788)
.|++++|++.|++++..+|++..+++.+|.+|.+.|++++|.+.+++++..+|+
T Consensus 4 ~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~ 57 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPD 57 (68)
T ss_dssp TTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTT
T ss_pred ccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 344444444444444444444444444444444444444444444444444444
No 281
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.36 E-value=2e-06 Score=91.97 Aligned_cols=68 Identities=24% Similarity=0.245 Sum_probs=49.3
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 003891 231 KPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEA---YNNLGVLYRDAGSISLAIDAYEQCLKI 298 (788)
Q Consensus 231 ~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~---~~~la~~~~~~g~~~eA~~~~~~al~l 298 (788)
+|+++..++++|.+|..+|+|++|+..|+++++++|++.++ |+++|.+|..+|++++|++++++++++
T Consensus 71 dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 71 DVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 46667777777777777777777777777777777777643 777777777777777777777777776
No 282
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.35 E-value=5.7e-05 Score=70.35 Aligned_cols=148 Identities=18% Similarity=0.156 Sum_probs=119.0
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh-cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 003891 148 DINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFH-FNPHCAEACNNLGVIYKDRDNLDKAVECYQM 226 (788)
Q Consensus 148 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~-~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~ 226 (788)
+.+....-..+.+...|... -.+.+|..+.+.|++.+|...|++++. +.-+++..+..++...+..+++.+|...+++
T Consensus 71 dP~R~~Rea~~~~~~ApTvq-nr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~ 149 (251)
T COG4700 71 DPERHLREATEELAIAPTVQ-NRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLED 149 (251)
T ss_pred ChhHHHHHHHHHHhhchhHH-HHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHH
Confidence 44444455555555555433 357789999999999999999999886 4667888999999999999999999999999
Q ss_pred HHhhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 003891 227 ALSIKPN--FSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLK 297 (788)
Q Consensus 227 al~~~p~--~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~ 297 (788)
..+.+|. .++....+|.+|..+|++.+|...|+.++...|+ +.+....+..+.++|+..+|..-+....+
T Consensus 150 l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~aq~~~v~d 221 (251)
T COG4700 150 LMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREANAQYVAVVD 221 (251)
T ss_pred HhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 9988875 4667888899999999999999999999998886 67777888899999988888776665543
No 283
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.29 E-value=4e-06 Score=68.19 Aligned_cols=63 Identities=24% Similarity=0.399 Sum_probs=37.1
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhh
Q 003891 243 VVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNA 305 (788)
Q Consensus 243 ~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~a 305 (788)
.+|...+++++|++++++++.++|+++..+..+|.++..+|++++|.+.++++++..|++..+
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~ 65 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDA 65 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHH
Confidence 445555566666666666666666655566666666666666666666666666666655544
No 284
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.29 E-value=0.00016 Score=69.98 Aligned_cols=182 Identities=16% Similarity=0.205 Sum_probs=108.2
Q ss_pred cCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CC--CCHHHHHHHHHHHHHCCCHHH
Q 003891 37 AGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALE----RP--MYAEAYCNMGVIYKNRGDLES 110 (788)
Q Consensus 37 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~----~p--~~~~~~~~la~~~~~~g~~~~ 110 (788)
.+++++|.++|.++ |+.|...++++.|=..|.++-+. +. +.+..|...+.+|.+. +.++
T Consensus 27 ~~k~eeAadl~~~A--------------an~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~cykk~-~~~e 91 (288)
T KOG1586|consen 27 SNKYEEAAELYERA--------------ANMYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANCYKKV-DPEE 91 (288)
T ss_pred CcchHHHHHHHHHH--------------HHHHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhcc-ChHH
Confidence 35788888888776 34455555666666666665432 11 2345566666666555 8999
Q ss_pred HHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhc-CCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHcCCh
Q 003891 111 AIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLE-GDINQGVAYYKKALYYNWHYA------DAMYNLGVAYGEMLKF 183 (788)
Q Consensus 111 A~~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~-g~~~~A~~~~~~al~~~p~~~------~~~~~la~~~~~~g~~ 183 (788)
|..++++++++..+... ...-+..+..+|.+|... .++++|+.+|+++-+...... ..+...+..-...++|
T Consensus 92 Av~cL~~aieIyt~~Gr-f~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY 170 (288)
T KOG1586|consen 92 AVNCLEKAIEIYTDMGR-FTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQY 170 (288)
T ss_pred HHHHHHHHHHHHHhhhH-HHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHH
Confidence 99999999887655432 112244455666666655 778888888888766543321 2344555666666777
Q ss_pred HHHHHHHHHHHhcCCCCH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 003891 184 DMAIVFYELAFHFNPHCA-------EACNNLGVIYKDRDNLDKAVECYQMALSIKPNF 234 (788)
Q Consensus 184 ~~A~~~~~~al~~~p~~~-------~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~ 234 (788)
.+|+..|++.....-++. ..++.-|.+++-..+.-.+...+++..+++|..
T Consensus 171 ~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F 228 (288)
T KOG1586|consen 171 SKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAF 228 (288)
T ss_pred HHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCcc
Confidence 777777777665433332 122334445555455555555555555555554
No 285
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.27 E-value=4.5e-06 Score=67.88 Aligned_cols=65 Identities=18% Similarity=0.194 Sum_probs=36.5
Q ss_pred HHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 003891 33 SLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCN 97 (788)
Q Consensus 33 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~ 97 (788)
++...+++++|+++++++++.+|+++..+..+|.++..+|++++|...++++++..|++..+...
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~ 68 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARAL 68 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHH
Confidence 44555555555555555555555555555555555555555555555555555555555444433
No 286
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.27 E-value=0.00053 Score=67.42 Aligned_cols=227 Identities=13% Similarity=0.121 Sum_probs=166.6
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------------------H-HHHHHHHHHHHHCCCHHHHHHHHHH
Q 003891 57 YAPAYYNLGVVYSELMQYDTALGCYEKAALERPMY------------------A-EAYCNMGVIYKNRGDLESAIACYER 117 (788)
Q Consensus 57 ~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~------------------~-~~~~~la~~~~~~g~~~~A~~~~~~ 117 (788)
....|...-.++.++..+++|..-++..-+.+..+ + ......|.+....|+..+.+.-+..
T Consensus 68 ~lq~wT~r~~~l~kLR~~~~a~~EL~~f~~lD~pdl~Yey~p~iyp~rrGSmVPFsmR~lhAe~~~~lgnpqesLdRl~~ 147 (366)
T KOG2796|consen 68 SLQLWTVRLALLVKLRLFQNAEMELEPFGNLDQPDLYYEYYPHVYPGRRGSMVPFSMRILHAELQQYLGNPQESLDRLHK 147 (366)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHhhhhhhccCCCcceeeeeccccCCCCcCccccHHHHHHHHHHHHhcCCcHHHHHHHHH
Confidence 34556666667777778888877666554432111 1 1223345666667777766655554
Q ss_pred HHhhCCCcHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC
Q 003891 118 CLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFN 197 (788)
Q Consensus 118 al~~~p~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 197 (788)
....-.+ +-.........+..++.+++-+ ..+.+.+..++...|+|.-.+..+.+.++.+
T Consensus 148 L~~~V~~--------------ii~~~e~~~~~ESsv~lW~KRl------~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~ 207 (366)
T KOG2796|consen 148 LKTVVSK--------------ILANLEQGLAEESSIRLWRKRL------GRVMYSMANCLLGMKEYVLSVDAYHSVIKYY 207 (366)
T ss_pred HHHHHHH--------------HHHHHHhccchhhHHHHHHHHH------HHHHHHHHHHHhcchhhhhhHHHHHHHHHhC
Confidence 4322110 1111111223355666666654 3567888899999999999999999999987
Q ss_pred -CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 003891 198 -PHCAEACNNLGVIYKDRDNLDKAVECYQMALSIK------PNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAE 270 (788)
Q Consensus 198 -p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~------p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~ 270 (788)
|..+.....+|.+..+.|+.+.|..+|++.-+.. .....+..+.+.+|.-.+++.+|...+.+++..+|.++.
T Consensus 208 ~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~ 287 (366)
T KOG2796|consen 208 PEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAV 287 (366)
T ss_pred CcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchh
Confidence 5678888999999999999999999999665432 233446778889999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCh
Q 003891 271 AYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSR 303 (788)
Q Consensus 271 ~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~ 303 (788)
+..+.|.|+.-.|+..+|++.++.++++.|...
T Consensus 288 a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~ 320 (366)
T KOG2796|consen 288 ANNNKALCLLYLGKLKDALKQLEAMVQQDPRHY 320 (366)
T ss_pred hhchHHHHHHHHHHHHHHHHHHHHHhccCCccc
Confidence 999999999999999999999999999999754
No 287
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.26 E-value=0.00011 Score=71.45 Aligned_cols=199 Identities=23% Similarity=0.199 Sum_probs=116.4
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 003891 93 EAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYN 172 (788)
Q Consensus 93 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 172 (788)
..|..-+.+|...+++++|..++.++.+-..++. .++.-+..+...+........+.++..+++++..
T Consensus 32 s~yekAAvafRnAk~feKakdcLlkA~~~yEnnr-slfhAAKayEqaamLake~~klsEvvdl~eKAs~----------- 99 (308)
T KOG1585|consen 32 SLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNR-SLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASE----------- 99 (308)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcc-cHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH-----------
Confidence 3455556677777778888887777776655544 3444566666666666666777777777777753
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHH
Q 003891 173 LGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNF------SQSLNNLGVVYT 246 (788)
Q Consensus 173 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~------~~~~~~la~~~~ 246 (788)
.|.+.|..+.|-..++++-+. .+..+.++|+.+|++++.+-... .+.+...++++.
T Consensus 100 ---lY~E~GspdtAAmaleKAak~---------------lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lV 161 (308)
T KOG1585|consen 100 ---LYVECGSPDTAAMALEKAAKA---------------LENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLV 161 (308)
T ss_pred ---HHHHhCCcchHHHHHHHHHHH---------------hhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhh
Confidence 455556666655555555332 23345566666666665542221 224445566677
Q ss_pred HcCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh----CCCChhhHHhHHHHhhhc
Q 003891 247 VQGKMDAAAEMIEKAIAA------NPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKI----DPDSRNAGQNRLLAMNYI 316 (788)
Q Consensus 247 ~~g~~~eA~~~l~kal~~------~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l----~p~~~~a~~~~lla~~~l 316 (788)
+..++++|-..+.+-... .++-...+.....+|.-..+|..|..+|+...++ .|++..+..+++-+ .
T Consensus 162 rl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~a---y 238 (308)
T KOG1585|consen 162 RLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTA---Y 238 (308)
T ss_pred hhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHH---h
Confidence 777777776666554332 2333344555556666666788888887776654 33334444443322 3
Q ss_pred cCCCchHH
Q 003891 317 NEGHDDKL 324 (788)
Q Consensus 317 ~~g~~~~~ 324 (788)
..|+.++.
T Consensus 239 d~gD~E~~ 246 (308)
T KOG1585|consen 239 DEGDIEEI 246 (308)
T ss_pred ccCCHHHH
Confidence 55665544
No 288
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.25 E-value=0.0019 Score=68.90 Aligned_cols=301 Identities=17% Similarity=0.110 Sum_probs=195.7
Q ss_pred HHHHHHHHHHHHHcC--ChHHHHHHHHHHHHhCCCC---HHHHHHHHHHH-HHcCCHHHHHHHHHHHHHhC---CC----
Q 003891 24 AIVLTDLGTSLKLAG--NTQDGIQKYYEALKIDPHY---APAYYNLGVVY-SELMQYDTALGCYEKAALER---PM---- 90 (788)
Q Consensus 24 a~~l~~lg~~~~~~g--~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~-~~~g~~~~A~~~~~kal~~~---p~---- 90 (788)
+..+..+++.+...| +..+++++++..+...|.. +.....+|.++ ...++.+.|...++++..+. |.
T Consensus 7 a~aLlGlAe~~rt~~PPkIkk~IkClqA~~~~~is~~veart~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~fydv 86 (629)
T KOG2300|consen 7 AEALLGLAEHFRTSGPPKIKKCIKCLQAIFQFQISFLVEARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSFYDV 86 (629)
T ss_pred HHHHHHHHHHHhhcCChhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccHHhh
Confidence 455777788888888 8899999999998887763 55677788665 46789999999999997653 22
Q ss_pred CHHHHHHHHHHHHHCC-CHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHh-------
Q 003891 91 YAEAYCNMGVIYKNRG-DLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYY------- 162 (788)
Q Consensus 91 ~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~------- 162 (788)
..+++..++.+|.... .+..|...+.+++++..+.+.. -...++++++++.-..++..|++.+.-..+.
T Consensus 87 Kf~a~SlLa~lh~~~~~s~~~~KalLrkaielsq~~p~w---sckllfQLaql~~idkD~~sA~elLavga~sAd~~~~~ 163 (629)
T KOG2300|consen 87 KFQAASLLAHLHHQLAQSFPPAKALLRKAIELSQSVPYW---SCKLLFQLAQLHIIDKDFPSALELLAVGAESADHICFP 163 (629)
T ss_pred hhHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCchh---hHHHHHHHHHHHhhhccchhHHHHHhccccccchhhhH
Confidence 2457788899998877 7889999999999998887722 2456677787877788888887764322111
Q ss_pred ----------------CCCCHHHH---HHHHH-------------------------HHHHcCChHHHHHHHHHH---Hh
Q 003891 163 ----------------NWHYADAM---YNLGV-------------------------AYGEMLKFDMAIVFYELA---FH 195 (788)
Q Consensus 163 ----------------~p~~~~~~---~~la~-------------------------~~~~~g~~~~A~~~~~~a---l~ 195 (788)
.++..++. ...+. .|...|+...+...+++. +.
T Consensus 164 ylr~~ftls~~~ll~me~d~~dV~~ll~~~~qi~~n~~sdk~~~E~LkvFyl~lql~yy~~~gq~rt~k~~lkQLQ~siq 243 (629)
T KOG2300|consen 164 YLRMLFTLSMLMLLIMERDDYDVEKLLQRCGQIWQNISSDKTQKEMLKVFYLVLQLSYYLLPGQVRTVKPALKQLQDSIQ 243 (629)
T ss_pred HHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHhcccchhhhHHHHHHHHHHHh
Confidence 11111110 00000 012334444433333322 21
Q ss_pred c-CCC------------CH-----------HHHHHH--HHHHHHcCCHHHHHHHHHHHHhhCCC------CHH-------
Q 003891 196 F-NPH------------CA-----------EACNNL--GVIYKDRDNLDKAVECYQMALSIKPN------FSQ------- 236 (788)
Q Consensus 196 ~-~p~------------~~-----------~~~~~l--a~~~~~~g~~~eA~~~~~~al~~~p~------~~~------- 236 (788)
. .+. .+ .++..+ -.--...|-+++|.++-++++..... ...
T Consensus 244 tist~~~~h~e~ilgsps~~l~~wlpkeqicaLV~l~tv~hsm~~gy~~~~~K~tDe~i~q~eklkq~d~~srilsm~km 323 (629)
T KOG2300|consen 244 TISTSSRGHDEKILGSPSPILFEWLPKEQICALVYLVTVIHSMPAGYFKKAQKYTDEAIKQTEKLKQADLMSRILSMFKM 323 (629)
T ss_pred ccCCCCCCccccccCCCChHHHhhccHhhhHhhhhhhHHhhhhhhHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHH
Confidence 1 110 00 011111 11112346678888888887765211 111
Q ss_pred -HHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCC-------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CCCChh
Q 003891 237 -SLNNLGVVYTVQGKMDAAAEMIEKAIAA---NPT-------YAEAYNNLGVLYRDAGSISLAIDAYEQCLKI-DPDSRN 304 (788)
Q Consensus 237 -~~~~la~~~~~~g~~~eA~~~l~kal~~---~p~-------~~~~~~~la~~~~~~g~~~eA~~~~~~al~l-~p~~~~ 304 (788)
.+-.+..+-.-.|++.+|++....+.+. .|. .+.++..+|......+.++.|...|..|.++ ...+..
T Consensus 324 ~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~ 403 (629)
T KOG2300|consen 324 ILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQ 403 (629)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHH
Confidence 3345566667789999999988877765 343 2567778888888899999999999999876 344567
Q ss_pred hHHhHHHHhhhccCCCchHHHHH
Q 003891 305 AGQNRLLAMNYINEGHDDKLFEA 327 (788)
Q Consensus 305 a~~~~lla~~~l~~g~~~~~~~~ 327 (788)
+..+.-++..|+..++.+...+.
T Consensus 404 a~~nlnlAi~YL~~~~~ed~y~~ 426 (629)
T KOG2300|consen 404 AFCNLNLAISYLRIGDAEDLYKA 426 (629)
T ss_pred HHHHHhHHHHHHHhccHHHHHHH
Confidence 77788889999998887765543
No 289
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.24 E-value=3.4e-05 Score=70.00 Aligned_cols=105 Identities=21% Similarity=0.234 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHH
Q 003891 202 EACNNLGVIYKDRDNLDKAVECYQMALSIKPNF---SQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYA---EAYNNL 275 (788)
Q Consensus 202 ~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~---~~~~~l 275 (788)
..++.-|...++.|+|++|++.|+......|.. ..+...++.+|++.+++++|+..+++.++++|+++ .+++..
T Consensus 11 ~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~ 90 (142)
T PF13512_consen 11 QELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMR 90 (142)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHH
Confidence 344444555555555555555555555544432 33555555555555555555555555555555442 345555
Q ss_pred HHHHHHcCC---------------HHHHHHHHHHHHhhCCCChhhH
Q 003891 276 GVLYRDAGS---------------ISLAIDAYEQCLKIDPDSRNAG 306 (788)
Q Consensus 276 a~~~~~~g~---------------~~eA~~~~~~al~l~p~~~~a~ 306 (788)
|.++..+.. ..+|...|++.++..|++.-+.
T Consensus 91 gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ya~ 136 (142)
T PF13512_consen 91 GLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEYAA 136 (142)
T ss_pred HHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChhHH
Confidence 555555443 6788899999999999876553
No 290
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.23 E-value=0.00016 Score=67.42 Aligned_cols=154 Identities=19% Similarity=0.237 Sum_probs=113.4
Q ss_pred HHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHH
Q 003891 101 IYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALY-YNWHYADAMYNLGVAYGE 179 (788)
Q Consensus 101 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~-~~p~~~~~~~~la~~~~~ 179 (788)
...+.=+.+....-..+.++..|... ....++..+.. .|++.+|...|++++. +.-.++..+..+++..+.
T Consensus 65 a~~q~ldP~R~~Rea~~~~~~ApTvq-nr~rLa~al~e-------lGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa 136 (251)
T COG4700 65 ALQQKLDPERHLREATEELAIAPTVQ-NRYRLANALAE-------LGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFA 136 (251)
T ss_pred HHHHhcChhHHHHHHHHHHhhchhHH-HHHHHHHHHHH-------hhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHh
Confidence 33444455555566666666666643 23334444444 5588888888888875 455677888888899999
Q ss_pred cCChHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 003891 180 MLKFDMAIVFYELAFHFNPH--CAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEM 257 (788)
Q Consensus 180 ~g~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~ 257 (788)
.+++..|...+++..+.+|. .++....+|..+..+|++.+|...|+.++...|+ +.+....+..+.++|+.++|..-
T Consensus 137 ~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~aq 215 (251)
T COG4700 137 IQEFAAAQQTLEDLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREANAQ 215 (251)
T ss_pred hccHHHHHHHHHHHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHHH
Confidence 99999999999998888775 4677888888999999999999999999888776 56677778888888888887766
Q ss_pred HHHHHH
Q 003891 258 IEKAIA 263 (788)
Q Consensus 258 l~kal~ 263 (788)
+....+
T Consensus 216 ~~~v~d 221 (251)
T COG4700 216 YVAVVD 221 (251)
T ss_pred HHHHHH
Confidence 655543
No 291
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.23 E-value=3.4e-05 Score=69.95 Aligned_cols=102 Identities=21% Similarity=0.257 Sum_probs=92.0
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHH
Q 003891 26 VLTDLGTSLKLAGNTQDGIQKYYEALKIDPHY---APAYYNLGVVYSELMQYDTALGCYEKAALERPMYA---EAYCNMG 99 (788)
Q Consensus 26 ~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~---~~~~~la 99 (788)
.++..|...+..|+|++|++.|+.+....|.. ..+.+.++.+|+..+++++|+..+++-++++|.++ .+++..|
T Consensus 12 ~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~g 91 (142)
T PF13512_consen 12 ELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRG 91 (142)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHH
Confidence 47888999999999999999999999987764 67899999999999999999999999999999864 5889999
Q ss_pred HHHHHCCC---------------HHHHHHHHHHHHhhCCCcHH
Q 003891 100 VIYKNRGD---------------LESAIACYERCLAVSPNFEI 127 (788)
Q Consensus 100 ~~~~~~g~---------------~~~A~~~~~~al~~~p~~~~ 127 (788)
.+++.+.. ..+|...|++.++..|++.-
T Consensus 92 L~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~y 134 (142)
T PF13512_consen 92 LSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEY 134 (142)
T ss_pred HHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChh
Confidence 99998876 88999999999999999763
No 292
>TIGR02398 gluc_glyc_Psyn glucosylglycerol-phosphate synthase. Glucosylglycerol-phosphate synthase catalyzes the key step in the biosynthesis of the osmolyte glucosylglycerol. It is known in several cyanobacteria and in Pseudomonas anguilliseptica. The enzyme is closely related to the alpha,alpha-trehalose-phosphate synthase, likewise involved in osmolyte biosynthesis, of E. coli and many other bacteria. A close homolog from Xanthomonas campestris is excluded from this model and scores between trusted and noise.
Probab=98.17 E-value=6.7e-05 Score=83.56 Aligned_cols=171 Identities=13% Similarity=0.079 Sum_probs=118.5
Q ss_pred CCeEEEecCCC--CcCCHHHHHHHHHHHhHcCC----cEEEEecCCCCC-----HHHHHHHHHHHHH-------cCCCCC
Q 003891 525 GFITFGSFNNL--AKITPKVLQVWARILCAVPN----SRLVVKCKPFCC-----DSVRHRFLSTLEQ-------LGLESL 586 (788)
Q Consensus 525 ~~~~f~~~~~~--~K~~~~~~~~~~~il~~~p~----~~l~l~~~~~~~-----~~~~~~l~~~~~~-------~gi~~~ 586 (788)
+..++.++.|+ .|..+.-++++.++|+..|+ .+|++++.|..+ ...+..+.+.+.+ .|.. .
T Consensus 284 ~~kiIl~VDRLDy~KGI~~kl~Afe~~L~~~Pe~~gkv~Lvqi~~psr~~v~~y~~l~~~v~~~v~~IN~~fg~~~~~-p 362 (487)
T TIGR02398 284 GVKLILSAERVDYTKGILEKLNAYERLLERRPELLGKVTLVTACVPAASGMTIYDELQGQIEQAVGRINGRFARIGWT-P 362 (487)
T ss_pred CceEEEEecccccccCHHHHHHHHHHHHHhCccccCceEEEEEeCCCcccchHHHHHHHHHHHHHHHHhhccCCCCCc-c
Confidence 45567788888 89999999999999999996 688888876432 1244444444443 3555 3
Q ss_pred cEEEcCCcCCcHHHHHhcccccEeecCCCCCC-chhHHHHhhhCC----ceeecCCCccCccchhHHHhhhCCcccc--c
Q 003891 587 RVDLLPLILLNHDHMQAYSLMDISLDTFPYAG-TTTTCESLYMGV----PCVTMAGSVHAHNVGVSLLTKVGLKHLI--A 659 (788)
Q Consensus 587 rv~~~~~~~~~~~~~~~~~~~Dv~Ld~~~~~g-~~t~~eal~~Gv----Pvvt~~g~~~~~r~~~~~l~~~gl~~~i--a 659 (788)
.+.|.+.++ .++..++|+.+||+|.|+-.-| +.++.|+++++. |+|. |+.+++- ..+. ..++ .
T Consensus 363 v~~~~~~v~-~~el~alYr~ADV~lvT~lrDGmNLVa~Eyva~~~~~~GvLIL-------SefaGaa-~~l~-~AllVNP 432 (487)
T TIGR02398 363 LQFFTRSLP-YEEVSAWFAMADVMWITPLRDGLNLVAKEYVAAQGLLDGVLVL-------SEFAGAA-VELK-GALLTNP 432 (487)
T ss_pred EEEEcCCCC-HHHHHHHHHhCCEEEECccccccCcchhhHHhhhcCCCCCEEE-------eccccch-hhcC-CCEEECC
Confidence 556777777 7999999999999999998854 779999999988 6664 6665322 1111 1222 4
Q ss_pred CCHHHHHHHHHHHhcCHH-HHHHHHHHHHHHhhcCCCCChHHHHHHHHHHH
Q 003891 660 KNEDEYVQLALQLASDVT-ALANLRMSLRDLMSKSPVCDGQNFALGLESTY 709 (788)
Q Consensus 660 ~~~~~y~~~a~~l~~d~~-~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~ 709 (788)
.|.++.++...+-.+.+. ++++.-+++++.+.+ +|...|++.+-+.+
T Consensus 433 ~d~~~~A~ai~~AL~m~~~Er~~R~~~l~~~v~~---~d~~~W~~~fl~~l 480 (487)
T TIGR02398 433 YDPVRMDETIYVALAMPKAEQQARMREMFDAVNY---YDVQRWADEFLAAV 480 (487)
T ss_pred CCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhh---CCHHHHHHHHHHHh
Confidence 688888877666665554 555555556666554 47788777665444
No 293
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.16 E-value=1.1e-05 Score=86.57 Aligned_cols=68 Identities=26% Similarity=0.303 Sum_probs=36.8
Q ss_pred CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 003891 163 NWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEA---CNNLGVIYKDRDNLDKAVECYQMALSI 230 (788)
Q Consensus 163 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~---~~~la~~~~~~g~~~eA~~~~~~al~~ 230 (788)
+|+++.+++++|.+|..+|+|++|+..|+++++++|++..+ |+++|.+|..+|++++|+.+++++++.
T Consensus 71 dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 71 DVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 44455555555555555555555555555555555555432 555555555555555555555555554
No 294
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.16 E-value=2.6e-06 Score=70.37 Aligned_cols=73 Identities=29% Similarity=0.472 Sum_probs=57.6
Q ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHh
Q 003891 90 MYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYY 162 (788)
Q Consensus 90 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~ 162 (788)
+...++.++|.+|..+|++++|+.+|++++++...........+.++..+|.++...|++++|++++++++++
T Consensus 3 ~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 3 DTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 3467889999999999999999999999998732233334456788888888888888888888888888765
No 295
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.15 E-value=0.00042 Score=67.52 Aligned_cols=203 Identities=19% Similarity=0.155 Sum_probs=103.5
Q ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCC
Q 003891 22 CLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHY------APAYYNLGVVYSELMQYDTALGCYEKAALE-----RPM 90 (788)
Q Consensus 22 ~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~g~~~~A~~~~~kal~~-----~p~ 90 (788)
.-+..|..-+..+...++|++|..++.++.+-..++ +.++-..+........+.++..+|+++..+ .|+
T Consensus 29 gaas~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~Gspd 108 (308)
T KOG1585|consen 29 GAASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPD 108 (308)
T ss_pred hhHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcc
Confidence 345667777777788888888888888887554333 334555566666667777777777777543 122
Q ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHH
Q 003891 91 YAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAM 170 (788)
Q Consensus 91 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 170 (788)
.+..-...+--..+.-+.++|+.+|++++.+-.+..... .| .+.+
T Consensus 109 tAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~---------------------ma--------------~el~ 153 (308)
T KOG1585|consen 109 TAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQ---------------------MA--------------FELY 153 (308)
T ss_pred hHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHH---------------------HH--------------HHHH
Confidence 222222222223333445555555555544432222111 11 1223
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhc------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh----CCCCHHHHHH
Q 003891 171 YNLGVAYGEMLKFDMAIVFYELAFHF------NPHCAEACNNLGVIYKDRDNLDKAVECYQMALSI----KPNFSQSLNN 240 (788)
Q Consensus 171 ~~la~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~----~p~~~~~~~~ 240 (788)
-..++++.+..++++|-..+.+-... .++....+.....+|....+|..|.++++...++ .+++..++.+
T Consensus 154 gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~len 233 (308)
T KOG1585|consen 154 GKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLEN 233 (308)
T ss_pred HHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHH
Confidence 33445555555555555544443221 2222334444444555555666666666665554 2333444444
Q ss_pred HHHHHHHcCCHHHHHHHHHH
Q 003891 241 LGVVYTVQGKMDAAAEMIEK 260 (788)
Q Consensus 241 la~~~~~~g~~~eA~~~l~k 260 (788)
|-..| ..|+.++..+.+..
T Consensus 234 LL~ay-d~gD~E~~~kvl~s 252 (308)
T KOG1585|consen 234 LLTAY-DEGDIEEIKKVLSS 252 (308)
T ss_pred HHHHh-ccCCHHHHHHHHcC
Confidence 44433 45666665555443
No 296
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=98.14 E-value=0.00015 Score=78.42 Aligned_cols=99 Identities=26% Similarity=0.320 Sum_probs=88.2
Q ss_pred HcCCHHHHHHHHHHHHhhCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 003891 213 DRDNLDKAVECYQMALSIKPNFSQ-SLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDA 291 (788)
Q Consensus 213 ~~g~~~eA~~~~~~al~~~p~~~~-~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~~eA~~~ 291 (788)
..|+...|++++..|+...|.... ...+||.++.+.|-...|-..+.+++.+....+-.++.+|..|..+.+.+.|++.
T Consensus 619 ~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~~ 698 (886)
T KOG4507|consen 619 AVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALEA 698 (886)
T ss_pred ecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHHH
Confidence 358889999999999988886544 6789999999999999999999999999988899999999999999999999999
Q ss_pred HHHHHhhCCCChhhHHhHHH
Q 003891 292 YEQCLKIDPDSRNAGQNRLL 311 (788)
Q Consensus 292 ~~~al~l~p~~~~a~~~~ll 311 (788)
|++|++++|+++.....+++
T Consensus 699 ~~~a~~~~~~~~~~~~~l~~ 718 (886)
T KOG4507|consen 699 FRQALKLTTKCPECENSLKL 718 (886)
T ss_pred HHHHHhcCCCChhhHHHHHH
Confidence 99999999999887665544
No 297
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=98.11 E-value=0.0002 Score=62.67 Aligned_cols=92 Identities=24% Similarity=0.303 Sum_probs=45.2
Q ss_pred HHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC----HHHHHHHHHHHHHcC
Q 003891 174 GVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNF----SQSLNNLGVVYTVQG 249 (788)
Q Consensus 174 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~----~~~~~~la~~~~~~g 249 (788)
|..+...|+.+.|++.|.+++.+.|..+.+|++.+..+.-+|+.++|+.-+++++++.... ..++...|.+|..+|
T Consensus 50 ~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g 129 (175)
T KOG4555|consen 50 AIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLG 129 (175)
T ss_pred HHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhC
Confidence 3444444555555555555555555555555555555555555555555555555443222 124444555555555
Q ss_pred CHHHHHHHHHHHHHhC
Q 003891 250 KMDAAAEMIEKAIAAN 265 (788)
Q Consensus 250 ~~~eA~~~l~kal~~~ 265 (788)
+-+.|..-|+.+-++.
T Consensus 130 ~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 130 NDDAARADFEAAAQLG 145 (175)
T ss_pred chHHHHHhHHHHHHhC
Confidence 5555555555554443
No 298
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=98.11 E-value=0.00017 Score=63.17 Aligned_cols=104 Identities=22% Similarity=0.235 Sum_probs=92.8
Q ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHH
Q 003891 22 CLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMY----AEAYCN 97 (788)
Q Consensus 22 ~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~----~~~~~~ 97 (788)
.....+-..|..+...|+.+.|++.|.+++.+.|.++.+|.+.+..+.-+|+.++|++-+++++++.... ..++..
T Consensus 41 e~S~~LEl~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQ 120 (175)
T KOG4555|consen 41 KASRELELKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQ 120 (175)
T ss_pred HHHHHHHHHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHH
Confidence 4445566778888999999999999999999999999999999999999999999999999999986543 457889
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCCCc
Q 003891 98 MGVIYKNRGDLESAIACYERCLAVSPNF 125 (788)
Q Consensus 98 la~~~~~~g~~~~A~~~~~~al~~~p~~ 125 (788)
.|.+|..+|+.+.|..-|+.+-++....
T Consensus 121 Rg~lyRl~g~dd~AR~DFe~AA~LGS~F 148 (175)
T KOG4555|consen 121 RGLLYRLLGNDDAARADFEAAAQLGSKF 148 (175)
T ss_pred HHHHHHHhCchHHHHHhHHHHHHhCCHH
Confidence 9999999999999999999998886654
No 299
>TIGR02919 accessory Sec system glycosyltransferase GtfB. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus.
Probab=98.08 E-value=9.7e-05 Score=81.67 Aligned_cols=162 Identities=10% Similarity=0.116 Sum_probs=107.7
Q ss_pred ccceEEcCCCccccCCCCCCCCCCCCCCCCCCCeEEEecCCCCcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHH
Q 003891 494 VEELIRLPECFLCYTPSPEAGPVCPTPALTNGFITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHR 573 (788)
Q Consensus 494 ~e~l~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~~~~ 573 (788)
.+++...|.+++ |.++. ....+...++++ ....++.+.++.+++|++.|-| |.+. ++..+
T Consensus 261 ~~~~~~ip~g~i-~~~~~-------~~r~~~~~l~~t--------~s~~I~~i~~Lv~~lPd~~f~I-ga~t---e~s~k 320 (438)
T TIGR02919 261 EYQEQISQLGYL-YPFKK-------DNKYRKQALILT--------NSDQIEHLEEIVQALPDYHFHI-AALT---EMSSK 320 (438)
T ss_pred ccCceEEEEEEE-Eeecc-------ccCCcccEEEEC--------CHHHHHHHHHHHHhCCCcEEEE-EecC---cccHH
Confidence 345666776655 43211 111234455555 2899999999999999999999 5432 22356
Q ss_pred HHHHHHHcCCCCCcEEEcCCcCCcHHHHHhcccccEeecCCCCCC-chhHHHHhhhCCceeecCCCccCccchhHHHhhh
Q 003891 574 FLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPYAG-TTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKV 652 (788)
Q Consensus 574 l~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~~Dv~Ld~~~~~g-~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l~~~ 652 (788)
|.+. .+. .+-+.+-+.. ..+.-..|..||++||++...| +.++.||+..|+|||+..-.........
T Consensus 321 L~~L-~~y---~nvvly~~~~--~~~l~~ly~~~dlyLdin~~e~~~~al~eA~~~G~pI~afd~t~~~~~~i~------ 388 (438)
T TIGR02919 321 LMSL-DKY---DNVKLYPNIT--TQKIQELYQTCDIYLDINHGNEILNAVRRAFEYNLLILGFEETAHNRDFIA------ 388 (438)
T ss_pred HHHH-Hhc---CCcEEECCcC--hHHHHHHHHhccEEEEccccccHHHHHHHHHHcCCcEEEEecccCCccccc------
Confidence 6555 555 3555555443 3467789999999999999855 8899999999999998764433222211
Q ss_pred CCcccc-cCCHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 003891 653 GLKHLI-AKNEDEYVQLALQLASDVTALANLRMSLRD 688 (788)
Q Consensus 653 gl~~~i-a~~~~~y~~~a~~l~~d~~~~~~~r~~~~~ 688 (788)
. ..++ ..+.++++++.+.+.+|++.++..-.+-++
T Consensus 389 ~-g~l~~~~~~~~m~~~i~~lL~d~~~~~~~~~~q~~ 424 (438)
T TIGR02919 389 S-ENIFEHNEVDQLISKLKDLLNDPNQFRELLEQQRE 424 (438)
T ss_pred C-CceecCCCHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 0 1222 368999999999999999765554444333
No 300
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.08 E-value=9.6e-06 Score=66.92 Aligned_cols=64 Identities=30% Similarity=0.402 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC---C----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003891 23 LAIVLTDLGTSLKLAGNTQDGIQKYYEALKID---P----HYAPAYYNLGVVYSELMQYDTALGCYEKAAL 86 (788)
Q Consensus 23 la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~---p----~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~ 86 (788)
++.++..+|.++...|++++|+.+|+++++.. + ..+.++.++|.++...|++++|+++++++++
T Consensus 4 ~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 4 TANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 34445555555555555555555555555431 1 1133444445555555555555555544443
No 301
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=98.05 E-value=3.9e-05 Score=71.71 Aligned_cols=74 Identities=26% Similarity=0.228 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhh---hcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 003891 108 LESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVK---LEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEML 181 (788)
Q Consensus 108 ~~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~---~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 181 (788)
|+.|.+.++.....+|.+.+...+.+.++..++.... ...-+++|+.-|++++.++|+..++++.+|.+|...+
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A 83 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLA 83 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHH
Confidence 5677777777788888888877777877777775532 3346788899999999999999999999999987665
No 302
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.05 E-value=0.028 Score=61.20 Aligned_cols=150 Identities=11% Similarity=0.032 Sum_probs=91.2
Q ss_pred HHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcC---ChHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHcCCHHHHHHH
Q 003891 149 INQGVAYYKKALYYNW-HYADAMYNLGVAYGEML---KFDMAIVFYELAFHFNPHC-AEACNNLGVIYKDRDNLDKAVEC 223 (788)
Q Consensus 149 ~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~eA~~~ 223 (788)
.+++.++|++++...- .+...++.++..-...- +++.....+++++.+...+ .-++..+-..-.+..-.+.|...
T Consensus 309 t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~i 388 (656)
T KOG1914|consen 309 TDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKI 388 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHH
Confidence 3455555555554321 12223333333222222 2555566666666553322 23445555555556667777777
Q ss_pred HHHHHhhCCCCHHHHHHHHHH-HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 003891 224 YQMALSIKPNFSQSLNNLGVV-YTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKI 298 (788)
Q Consensus 224 ~~~al~~~p~~~~~~~~la~~-~~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l 298 (788)
|.++-+..-....++..-|.+ |...++.+-|...|+-.++..++.+..-......+...++-..|...|++++..
T Consensus 389 F~kaR~~~r~~hhVfVa~A~mEy~cskD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s 464 (656)
T KOG1914|consen 389 FKKAREDKRTRHHVFVAAALMEYYCSKDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTS 464 (656)
T ss_pred HHHHhhccCCcchhhHHHHHHHHHhcCChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhc
Confidence 777765543333333333332 556788888888888888888888888777888888888888888888888876
No 303
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.05 E-value=0.0011 Score=70.47 Aligned_cols=267 Identities=15% Similarity=0.118 Sum_probs=185.7
Q ss_pred HHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH-HHhC------CC--CHHHHHHHHHHHH
Q 003891 33 SLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKA-ALER------PM--YAEAYCNMGVIYK 103 (788)
Q Consensus 33 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ka-l~~~------p~--~~~~~~~la~~~~ 103 (788)
.+.+..+...+..-.+.+.....+.+.+++..+..++..|++.+|.+.+... +... |. ....|+++|.+++
T Consensus 215 ~llq~~~Lk~~krevK~vmn~a~~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~ 294 (696)
T KOG2471|consen 215 FLLQTRNLKLAKREVKHVMNIAQDSSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHY 294 (696)
T ss_pred HHHHHHHHHHHHHhhhhhhhhcCCCcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEee
Confidence 3455566667777777777777788999999999999999999999988654 2222 22 2345789999999
Q ss_pred HCCCHHHHHHHHHHHHhh---------CC--CcHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 003891 104 NRGDLESAIACYERCLAV---------SP--NFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYN 172 (788)
Q Consensus 104 ~~g~~~~A~~~~~~al~~---------~p--~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 172 (788)
+.+.|.-+..+|.++++. .| ...-....-..++++.|..+...|+...|.++|.++......++..|..
T Consensus 295 ~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLR 374 (696)
T KOG2471|consen 295 QLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLR 374 (696)
T ss_pred ehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHH
Confidence 999999999999999961 11 1111122234567888888888999999999999999999999999999
Q ss_pred HHHHHHHcCC-------------------------------------------------hHHHHHHHHHHHhcC------
Q 003891 173 LGVAYGEMLK-------------------------------------------------FDMAIVFYELAFHFN------ 197 (788)
Q Consensus 173 la~~~~~~g~-------------------------------------------------~~~A~~~~~~al~~~------ 197 (788)
++.+.....+ .+-|.-+++.++-+-
T Consensus 375 lAEcCima~~~~l~ee~~~s~s~~~i~~~vig~g~rr~~m~~~nt~~~~~qS~~~p~~slefA~vCLrnal~Ll~e~q~~ 454 (696)
T KOG2471|consen 375 LAECCIMALQKGLLEEGNSSLSRSEIRVHVIGKGNRRQLMIEENTYVELAQSNQLPKLSLEFARVCLRNALYLLNEKQDL 454 (696)
T ss_pred HHHHHHHHhhhhhhhhccCCcccccceeeeecccchhheeecccceeccccccCCCccccHHHHHHHHhhhhcCchhhcc
Confidence 9988742110 123444444444220
Q ss_pred ---------------------------------------C-CC-----------HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 003891 198 ---------------------------------------P-HC-----------AEACNNLGVIYKDRDNLDKAVECYQM 226 (788)
Q Consensus 198 ---------------------------------------p-~~-----------~~~~~~la~~~~~~g~~~eA~~~~~~ 226 (788)
| .. ..++.+.+.+-.++|+.-.|+..-.+
T Consensus 455 ~~~~~~a~ns~~~g~~~e~~e~~~t~~Sk~h~gd~~~~~p~ssp~~~e~leNm~~ai~A~~ayV~L~Lgd~i~AL~~a~k 534 (696)
T KOG2471|consen 455 GSILSVAMNSTKEGSSSEHEEGNTTTDSKEHKGDMSQEIPQSSPSAFEDLENMRQAIFANMAYVELELGDPIKALSAATK 534 (696)
T ss_pred hhhhhhhccccccCCCCcCCCCCCCcchhcCCCCCCccCCCCCcchHHHHHHHHHHHHHHHHHHHHHhcChhhHHHHHHH
Confidence 1 00 12344556666778888888888888
Q ss_pred HHhhCCCCHHHHHHHHHHH-----HHcCCHHHHHHHHHHHHH-----------------------hCCC----------C
Q 003891 227 ALSIKPNFSQSLNNLGVVY-----TVQGKMDAAAEMIEKAIA-----------------------ANPT----------Y 268 (788)
Q Consensus 227 al~~~p~~~~~~~~la~~~-----~~~g~~~eA~~~l~kal~-----------------------~~p~----------~ 268 (788)
.++. ++...++..+|.+| ..+.+..+|..++.-.+- ++|. .
T Consensus 535 LLq~-~~lS~~~kfLGHiYAaEAL~lldr~seA~~HL~p~~~~~~~f~~~~n~~Df~~~~~~~e~l~~s~~r~~q~~~~s 613 (696)
T KOG2471|consen 535 LLQL-ADLSKIYKFLGHIYAAEALCLLDRPSEAGAHLSPYLLGQDDFKLPYNQEDFDQWWKHTETLDPSTGRTRQSVFLS 613 (696)
T ss_pred HHhh-hhhhhHHHHHHHHHHHHHHHHcCChhhhhhccChhhcCCcccccccchhhhhhhhccccccCCcCCCCcccccCC
Confidence 8765 44455555555554 456777777766544210 0110 0
Q ss_pred -----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 003891 269 -----AEAYNNLGVLYRDAGSISLAIDAYEQCLKIDP 300 (788)
Q Consensus 269 -----~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p 300 (788)
...+++||.++.-+|++++|...+..+..+-+
T Consensus 614 v~~Ar~v~~~nLa~a~alq~~~dqAk~ll~~aatl~h 650 (696)
T KOG2471|consen 614 VEEARGVLFANLAAALALQGHHDQAKSLLTHAATLLH 650 (696)
T ss_pred HHHHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhh
Confidence 13578899999999999999999999888877
No 304
>cd03793 GT1_Glycogen_synthase_GSY2_like Glycogen synthase, which is most closely related to the GT1 family of glycosyltransferases, catalyzes the transfer of a glucose molecule from UDP-glucose to a terminal branch of a glycogen molecule, a rate-limit step of glycogen biosynthesis. GSY2, the member of this family in S. cerevisiae, has been shown to possess glycogen synthase activity.
Probab=98.04 E-value=1.7e-05 Score=88.41 Aligned_cols=111 Identities=14% Similarity=0.028 Sum_probs=76.0
Q ss_pred HHHHHhcccccEeecCCCC-CCchhHHHHhhhCCceeecCCCccCccchhHHHhhhCC----cccc--------cCCHHH
Q 003891 598 HDHMQAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGL----KHLI--------AKNEDE 664 (788)
Q Consensus 598 ~~~~~~~~~~Dv~Ld~~~~-~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l~~~gl----~~~i--------a~~~~~ 664 (788)
.++...|+.||+++-|+.| +.|.|.+|||+||+||||-....+.. .+-...|- .-+| ..+.++
T Consensus 466 ~~y~E~~~g~dl~v~PS~yE~fG~~~lEAma~G~PvI~t~~~gf~~----~v~E~v~~~~~~gi~V~~r~~~~~~e~v~~ 541 (590)
T cd03793 466 LDYEEFVRGCHLGVFPSYYEPWGYTPAECTVMGIPSITTNLSGFGC----FMEEHIEDPESYGIYIVDRRFKSPDESVQQ 541 (590)
T ss_pred cchHHHhhhceEEEeccccCCCCcHHHHHHHcCCCEEEccCcchhh----hhHHHhccCCCceEEEecCCccchHHHHHH
Confidence 3466678889999999988 55999999999999999955443311 11111111 1122 346778
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHH
Q 003891 665 YVQLALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRNMWH 714 (788)
Q Consensus 665 y~~~a~~l~~d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~ 714 (788)
+.+...++++. +.++++.++.+.. ..+..|+++.++....+||..+.+
T Consensus 542 La~~m~~~~~~-~~r~~~~~r~~~~-r~s~~f~W~~~~~~Y~~A~~~Al~ 589 (590)
T cd03793 542 LTQYMYEFCQL-SRRQRIIQRNRTE-RLSDLLDWRNLGRYYRKARQLALS 589 (590)
T ss_pred HHHHHHHHhCC-cHHHHHHHHHHHH-HHHHhCCHHHHHHHHHHHHHHHhh
Confidence 88888888855 4555555554322 224679999999999999988765
No 305
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=98.03 E-value=3.7e-05 Score=71.86 Aligned_cols=91 Identities=25% Similarity=0.300 Sum_probs=67.5
Q ss_pred HHHHHHHHHHcCCCChhhHHHHHHHHHHHHHHHH---HcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-----
Q 003891 2 LVASYHKALSADPSYKPAAECLAIVLTDLGTSLK---LAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQ----- 73 (788)
Q Consensus 2 Ai~~~~kaL~~~P~~~~a~~~la~~l~~lg~~~~---~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~----- 73 (788)
|.+.++.....+|.+.+++.+-+.++..++.... ...-+++|+.-|++++.++|+..++++.+|.+|...+.
T Consensus 10 ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~ 89 (186)
T PF06552_consen 10 ARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTPDT 89 (186)
T ss_dssp HHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---H
T ss_pred HHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCCh
Confidence 5678888999999999999999999999887633 33567899999999999999999999999999987653
Q ss_pred ------HHHHHHHHHHHHHhCCCCH
Q 003891 74 ------YDTALGCYEKAALERPMYA 92 (788)
Q Consensus 74 ------~~~A~~~~~kal~~~p~~~ 92 (788)
|++|..+|+++...+|++.
T Consensus 90 ~~A~~~F~kA~~~FqkAv~~~P~ne 114 (186)
T PF06552_consen 90 AEAEEYFEKATEYFQKAVDEDPNNE 114 (186)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-TT-H
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCcH
Confidence 5556666666666666653
No 306
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.03 E-value=0.00024 Score=75.47 Aligned_cols=282 Identities=12% Similarity=0.007 Sum_probs=186.4
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHh-----C----------CCCHH
Q 003891 30 LGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVY-SELMQYDTALGCYEKAALE-----R----------PMYAE 93 (788)
Q Consensus 30 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~-~~~g~~~~A~~~~~kal~~-----~----------p~~~~ 93 (788)
.+...+..+.++...+.++..-.++......+++.+.+. ++.|.+.. ...++....+ . .+...
T Consensus 23 ~a~~~f~~~~~d~cl~~l~~l~t~~~~~~~v~~n~av~~~~kt~~tq~-~~ll~el~aL~~~~~~~~~~~~gld~~~~t~ 101 (696)
T KOG2471|consen 23 QAHEQFNNSEFDRCLELLQELETRGESSGPVLHNRAVVSYYKTGCTQH-SVLLKELEALTADADAPGDVSSGLSLKQGTV 101 (696)
T ss_pred HHHhccCCcchHHHHHHHHHHHhccccccceeeehhhHHHHhcccchh-HHHHHHHHHHHHhhccccchhcchhhhcchH
Confidence 344456678999999999888888777766666666554 44444322 2222222111 1 12345
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHh------CC--C
Q 003891 94 AYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYY------NW--H 165 (788)
Q Consensus 94 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~------~p--~ 165 (788)
.+++.|.+|+...++.+|++.................. ......-..+......++|+.++.-.-++ .+ +
T Consensus 102 ~~yn~aVi~yh~~~~g~a~~~~~~lv~r~e~le~~~aa--~v~~l~~~l~~~t~q~e~al~~l~vL~~~~~~~~~~~~gn 179 (696)
T KOG2471|consen 102 MDYNFAVIFYHHEENGSAMQLSSNLVSRTESLESSSAA--SVTLLSDLLAAETSQCEEALDYLNVLAEIEAEKRMKLVGN 179 (696)
T ss_pred HhhhhheeeeeHhhcchHHHhhhhHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccc
Confidence 78888999998888988888777665543332221111 11111122333344556666554332221 00 0
Q ss_pred C-------------------------HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHH
Q 003891 166 Y-------------------------ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKA 220 (788)
Q Consensus 166 ~-------------------------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA 220 (788)
+ ..+.......|..+.+...+..-.+.++....+.+.+....+..++..|++.+|
T Consensus 180 ~~~~nn~~kt~s~~aAe~s~~~a~~k~~~~~ykVr~llq~~~Lk~~krevK~vmn~a~~s~~~l~LKsq~eY~~gn~~kA 259 (696)
T KOG2471|consen 180 HIPANNLLKTLSPSAAERSFSTADLKLELQLYKVRFLLQTRNLKLAKREVKHVMNIAQDSSMALLLKSQLEYAHGNHPKA 259 (696)
T ss_pred ccchhhhcccCCcchhcccchhhccchhhhHhhHHHHHHHHHHHHHHHhhhhhhhhcCCCcHHHHHHHHHHHHhcchHHH
Confidence 0 012333344556667777777777777777788899999999999999999999
Q ss_pred HHHHHHHH-hhCCC--------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---------C---------CCCHHHHH
Q 003891 221 VECYQMAL-SIKPN--------FSQSLNNLGVVYTVQGKMDAAAEMIEKAIAA---------N---------PTYAEAYN 273 (788)
Q Consensus 221 ~~~~~~al-~~~p~--------~~~~~~~la~~~~~~g~~~eA~~~l~kal~~---------~---------p~~~~~~~ 273 (788)
.+.+...- ...+. ....++++|.+++..|.|..+..+|.+|++. . ....++.+
T Consensus 260 ~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilY 339 (696)
T KOG2471|consen 260 MKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILY 339 (696)
T ss_pred HHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHH
Confidence 99886542 22222 1235789999999999999999999999961 1 12357899
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCChhhHHhHHHHhh
Q 003891 274 NLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMN 314 (788)
Q Consensus 274 ~la~~~~~~g~~~eA~~~~~~al~l~p~~~~a~~~~lla~~ 314 (788)
+.|..|...|+.-.|.++|.++.+..-.++..|..+.-++.
T Consensus 340 NcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCi 380 (696)
T KOG2471|consen 340 NCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCI 380 (696)
T ss_pred hhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 99999999999999999999999999888888877554443
No 307
>TIGR01426 MGT glycosyltransferase, MGT family. This model describes the MGT (macroside glycosyltransferase) subfamily of the UDP-glucuronosyltransferase family. Members include a number of glucosyl transferases for macrolide antibiotic inactivation, but also include transferases of glucose-related sugars for macrolide antibiotic production.
Probab=98.02 E-value=0.00014 Score=80.44 Aligned_cols=165 Identities=14% Similarity=0.176 Sum_probs=107.6
Q ss_pred CCCCeEEEecCCCCcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHHHH
Q 003891 523 TNGFITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQ 602 (788)
Q Consensus 523 ~~~~~~f~~~~~~~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~~~~l~~~~~~~gi~~~rv~~~~~~~~~~~~~~ 602 (788)
.+..++|.++++.....+.+++...+.+...+.-.++..|.+.. ...+. .+ +++|.+.++++ ..+
T Consensus 223 ~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~g~~~~----~~~~~------~~-~~~v~~~~~~p-~~~--- 287 (392)
T TIGR01426 223 DGRPVVLISLGTVFNNQPSFYRTCVEAFRDLDWHVVLSVGRGVD----PADLG------EL-PPNVEVRQWVP-QLE--- 287 (392)
T ss_pred CCCCEEEEecCccCCCCHHHHHHHHHHHhcCCCeEEEEECCCCC----hhHhc------cC-CCCeEEeCCCC-HHH---
Confidence 34567888999887777777777777777777555555554311 11111 23 37888888886 344
Q ss_pred hcccccEeecCCCCCCchhHHHHhhhCCceeecCCCccCccchhHHHhhhCCccccc---CCHHHHHHHHHHHhcCHHHH
Q 003891 603 AYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIA---KNEDEYVQLALQLASDVTAL 679 (788)
Q Consensus 603 ~~~~~Dv~Ld~~~~~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l~~~gl~~~ia---~~~~~y~~~a~~l~~d~~~~ 679 (788)
.+..||+++. .+|..|++|||.+|+|+|+++... ....-+..+...|....+- -+.++..+...++..|++.+
T Consensus 288 ll~~~~~~I~---hgG~~t~~Eal~~G~P~v~~p~~~-dq~~~a~~l~~~g~g~~l~~~~~~~~~l~~ai~~~l~~~~~~ 363 (392)
T TIGR01426 288 ILKKADAFIT---HGGMNSTMEALFNGVPMVAVPQGA-DQPMTARRIAELGLGRHLPPEEVTAEKLREAVLAVLSDPRYA 363 (392)
T ss_pred HHhhCCEEEE---CCCchHHHHHHHhCCCEEecCCcc-cHHHHHHHHHHCCCEEEeccccCCHHHHHHHHHHHhcCHHHH
Confidence 4556999982 366678999999999999987542 2334455666677765443 25678888888899999866
Q ss_pred HHHHHHHHHHhhcCCCCChHHHHHHHHHHH
Q 003891 680 ANLRMSLRDLMSKSPVCDGQNFALGLESTY 709 (788)
Q Consensus 680 ~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~ 709 (788)
+.++ .+++.+... ...+..++.+|+.+
T Consensus 364 ~~~~-~l~~~~~~~--~~~~~aa~~i~~~~ 390 (392)
T TIGR01426 364 ERLR-KMRAEIREA--GGARRAADEIEGFL 390 (392)
T ss_pred HHHH-HHHHHHHHc--CCHHHHHHHHHHhh
Confidence 6653 334444322 24566666676654
No 308
>TIGR03492 conserved hypothetical protein. This protein family is restricted to the Cyanobacteria, in one or two copies, save for instances in the genus Deinococcus. This protein shows some sequence similarity, especially toward the C-terminus, to lipid-A-disaccharide synthase (TIGR00215 or pfam02684). The function is unknown.
Probab=98.02 E-value=5e-05 Score=83.61 Aligned_cols=156 Identities=15% Similarity=0.165 Sum_probs=99.8
Q ss_pred CcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCC-------------cEEEcCCcCCcHHHHH
Q 003891 536 AKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESL-------------RVDLLPLILLNHDHMQ 602 (788)
Q Consensus 536 ~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~~~~l~~~~~~~gi~~~-------------rv~~~~~~~~~~~~~~ 602 (788)
.+.-|.++++..++.++ |+.++++...+. ...+.+++.+.+.|+... .+.+.+. ..+...
T Consensus 220 ~~~lp~~l~al~~L~~~-~~~~~v~~~~~~---~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~v~~~---~~~~~~ 292 (396)
T TIGR03492 220 YRNLKLLLRALEALPDS-QPFVFLAAIVPS---LSLEKLQAILEDLGWQLEGSSEDQTSLFQKGTLEVLLG---RGAFAE 292 (396)
T ss_pred HccHHHHHHHHHHHhhC-CCeEEEEEeCCC---CCHHHHHHHHHhcCceecCCccccchhhccCceEEEec---hHhHHH
Confidence 34556888887777655 777777654221 234556666666676521 2444433 346777
Q ss_pred hcccccEeecCCCCCCchhHHHHhhhCCceeecCCCccCccchhHHHhhh----CCccc-ccCCHHHHHHHHHHHhcCHH
Q 003891 603 AYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKV----GLKHL-IAKNEDEYVQLALQLASDVT 677 (788)
Q Consensus 603 ~~~~~Dv~Ld~~~~~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l~~~----gl~~~-ia~~~~~y~~~a~~l~~d~~ 677 (788)
.|+.||++|-. .||+|.|++.+|+|+|..+++.+ ...+.++... |-... +-.+.+...+...+|..|++
T Consensus 293 ~l~~ADlvI~r----SGt~T~E~a~lg~P~Ilip~~~~--q~na~~~~~~~~l~g~~~~l~~~~~~~l~~~l~~ll~d~~ 366 (396)
T TIGR03492 293 ILHWADLGIAM----AGTATEQAVGLGKPVIQLPGKGP--QFTYGFAEAQSRLLGGSVFLASKNPEQAAQVVRQLLADPE 366 (396)
T ss_pred HHHhCCEEEEC----cCHHHHHHHHhCCCEEEEeCCCC--HHHHHHHHhhHhhcCCEEecCCCCHHHHHHHHHHHHcCHH
Confidence 88899999954 45666999999999999986533 3455555542 43333 34567888899999999999
Q ss_pred HHHHHHHHHHHHhhcCCCCChHHHHHHHH
Q 003891 678 ALANLRMSLRDLMSKSPVCDGQNFALGLE 706 (788)
Q Consensus 678 ~~~~~r~~~~~~~~~~~~~~~~~~~~~~e 706 (788)
.+.++++..+.++... ...++.++.++
T Consensus 367 ~~~~~~~~~~~~lg~~--~a~~~ia~~i~ 393 (396)
T TIGR03492 367 LLERCRRNGQERMGPP--GASARIAESIL 393 (396)
T ss_pred HHHHHHHHHHHhcCCC--CHHHHHHHHHH
Confidence 9888886555554321 23444444443
No 309
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.96 E-value=0.00068 Score=68.88 Aligned_cols=152 Identities=13% Similarity=-0.041 Sum_probs=124.3
Q ss_pred hcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc-CCCC---HHHHHHHHHHHHHcCCHHHH
Q 003891 145 LEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHF-NPHC---AEACNNLGVIYKDRDNLDKA 220 (788)
Q Consensus 145 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~---~~~~~~la~~~~~~g~~~eA 220 (788)
..|++.+|....++.++..|.+.-++..--.+++.+|+.+.-...+++.+.. +++. ..+.-.++..+.+.|-|++|
T Consensus 115 ~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~dA 194 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDDA 194 (491)
T ss_pred ccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchhH
Confidence 3678889999999999999998888888888889999999999999998877 6655 44555677888899999999
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003891 221 VECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTY----AEAYNNLGVLYRDAGSISLAIDAYEQCL 296 (788)
Q Consensus 221 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~----~~~~~~la~~~~~~g~~~eA~~~~~~al 296 (788)
.+.-++++++++.+..+...++.++...|+++++.++..+--..-... ..-|..-+.++...+.|+.|++.|.+-+
T Consensus 195 Ek~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD~ei 274 (491)
T KOG2610|consen 195 EKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYDREI 274 (491)
T ss_pred HHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHHHHH
Confidence 999999999999999999999999999999999999887764432221 1234557788888899999999998654
No 310
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.95 E-value=0.00045 Score=67.95 Aligned_cols=196 Identities=14% Similarity=0.120 Sum_probs=142.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhhh
Q 003891 64 LGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKV 143 (788)
Q Consensus 64 lg~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~~~ 143 (788)
-+.+....|+..+.+.-+...... -..+-.........+..++.++|-+. .+.+.+..++
T Consensus 128 hAe~~~~lgnpqesLdRl~~L~~~-------V~~ii~~~e~~~~~ESsv~lW~KRl~-------------~Vmy~~~~~l 187 (366)
T KOG2796|consen 128 HAELQQYLGNPQESLDRLHKLKTV-------VSKILANLEQGLAEESSIRLWRKRLG-------------RVMYSMANCL 187 (366)
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHH-------HHHHHHHHHhccchhhHHHHHHHHHH-------------HHHHHHHHHH
Confidence 355556677777766655554321 11122222223333555555555432 2333334444
Q ss_pred hhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC------CCCHHHHHHHHHHHHHcCC
Q 003891 144 KLEGDINQGVAYYKKALYYN-WHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFN------PHCAEACNNLGVIYKDRDN 216 (788)
Q Consensus 144 ~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~------p~~~~~~~~la~~~~~~g~ 216 (788)
.-.+.|.-....+.+.++.+ |..+.....+|.+..+.|+.+.|..++++.-+.+ .....+..+.+.+|.-.++
T Consensus 188 lG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn 267 (366)
T KOG2796|consen 188 LGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNN 267 (366)
T ss_pred hcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccc
Confidence 44679999999999999988 5677888899999999999999999999655432 2345677788899999999
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHH
Q 003891 217 LDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYA---EAYNNLGVLY 279 (788)
Q Consensus 217 ~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~---~~~~~la~~~ 279 (788)
+.+|...|.+.+..++.++.+.++.|.|+.-.|+...|++.++.++...|... ...++|..+|
T Consensus 268 ~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~l~es~~~nL~tmy 333 (366)
T KOG2796|consen 268 FAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRHYLHESVLFNLTTMY 333 (366)
T ss_pred hHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCccchhhhHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999998753 2344444443
No 311
>PF13524 Glyco_trans_1_2: Glycosyl transferases group 1
Probab=97.93 E-value=5.7e-05 Score=64.53 Aligned_cols=90 Identities=14% Similarity=0.160 Sum_probs=66.0
Q ss_pred EeecCCCCCC-chhHHHHhhhCCceeecCCCccCccchhHHHhhhCCcccccCCHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 003891 609 ISLDTFPYAG-TTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIAKNEDEYVQLALQLASDVTALANLRMSLR 687 (788)
Q Consensus 609 v~Ld~~~~~g-~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l~~~gl~~~ia~~~~~y~~~a~~l~~d~~~~~~~r~~~~ 687 (788)
|+|.+..++| +...+|+|++|+|||+-.-. +..-+-.-|...+...|+++.+++...|.+||++++.++++.+
T Consensus 1 i~Ln~~~~~~~~~r~~E~~a~G~~vi~~~~~------~~~~~~~~~~~~~~~~~~~el~~~i~~ll~~~~~~~~ia~~a~ 74 (92)
T PF13524_consen 1 INLNPSRSDGPNMRIFEAMACGTPVISDDSP------GLREIFEDGEHIITYNDPEELAEKIEYLLENPEERRRIAKNAR 74 (92)
T ss_pred CEeeCCCCCCCchHHHHHHHCCCeEEECChH------HHHHHcCCCCeEEEECCHHHHHHHHHHHHCCHHHHHHHHHHHH
Confidence 4566665544 66899999999999983321 1111111144456677999999999999999999999999999
Q ss_pred HHhhcCCCCChHHHHHHHH
Q 003891 688 DLMSKSPVCDGQNFALGLE 706 (788)
Q Consensus 688 ~~~~~~~~~~~~~~~~~~e 706 (788)
+.+.+. ++.+..++++.
T Consensus 75 ~~v~~~--~t~~~~~~~il 91 (92)
T PF13524_consen 75 ERVLKR--HTWEHRAEQIL 91 (92)
T ss_pred HHHHHh--CCHHHHHHHHH
Confidence 998755 67777776653
No 312
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.90 E-value=3.6e-05 Score=74.55 Aligned_cols=99 Identities=20% Similarity=0.235 Sum_probs=93.1
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 003891 24 AIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYK 103 (788)
Q Consensus 24 a~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~ 103 (788)
+.-+...|+.++....|..|+.+|.+++.++|..+..|.+.+.++++.++++.+.....+++++.|+....++.+|....
T Consensus 10 a~qlkE~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l 89 (284)
T KOG4642|consen 10 AEQLKEQGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLL 89 (284)
T ss_pred HHHHHhccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHH
Confidence 44467778888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HCCCHHHHHHHHHHHHhhC
Q 003891 104 NRGDLESAIACYERCLAVS 122 (788)
Q Consensus 104 ~~g~~~~A~~~~~~al~~~ 122 (788)
....|++|+..++++..+.
T Consensus 90 ~s~~~~eaI~~Lqra~sl~ 108 (284)
T KOG4642|consen 90 QSKGYDEAIKVLQRAYSLL 108 (284)
T ss_pred hhccccHHHHHHHHHHHHH
Confidence 9999999999999997664
No 313
>COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]
Probab=97.88 E-value=0.00059 Score=73.36 Aligned_cols=148 Identities=20% Similarity=0.275 Sum_probs=105.6
Q ss_pred CCeEEEecCCC---CcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHHH
Q 003891 525 GFITFGSFNNL---AKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHM 601 (788)
Q Consensus 525 ~~~~f~~~~~~---~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~~~~l~~~~~~~gi~~~rv~~~~~~~~~~~~~ 601 (788)
+.+|...++-. .+++..+-+++..+.+ +..++..++. ....++.....+.|+ +.+.|.. ++..
T Consensus 182 ~~~~ilV~GGS~Ga~~ln~~v~~~~~~l~~---~~~v~~~~G~----~~~~~~~~~~~~~~~----~~v~~f~---~dm~ 247 (357)
T COG0707 182 DKKTILVTGGSQGAKALNDLVPEALAKLAN---RIQVIHQTGK----NDLEELKSAYNELGV----VRVLPFI---DDMA 247 (357)
T ss_pred CCcEEEEECCcchhHHHHHHHHHHHHHhhh---CeEEEEEcCc----chHHHHHHHHhhcCc----EEEeeHH---hhHH
Confidence 44555554422 4455555554444443 4555555443 225677777777777 5666663 5677
Q ss_pred HhcccccEeecCCCC-CCchhHHHHhhhCCceeecCCCcc---CccchhHHHhhhCCcccccC---CHHHHHHHHHHHhc
Q 003891 602 QAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVH---AHNVGVSLLTKVGLKHLIAK---NEDEYVQLALQLAS 674 (788)
Q Consensus 602 ~~~~~~Dv~Ld~~~~-~g~~t~~eal~~GvPvvt~~g~~~---~~r~~~~~l~~~gl~~~ia~---~~~~y~~~a~~l~~ 674 (788)
.+|..+|+++ + +|++|..|.+++|+|+|-.+=..- .....|-.|...|..-++.. +.+.+++...++.+
T Consensus 248 ~~~~~ADLvI----sRaGa~Ti~E~~a~g~P~IliP~p~~~~~~Q~~NA~~l~~~gaa~~i~~~~lt~~~l~~~i~~l~~ 323 (357)
T COG0707 248 ALLAAADLVI----SRAGALTIAELLALGVPAILVPYPPGADGHQEYNAKFLEKAGAALVIRQSELTPEKLAELILRLLS 323 (357)
T ss_pred HHHHhccEEE----eCCcccHHHHHHHhCCCEEEeCCCCCccchHHHHHHHHHhCCCEEEeccccCCHHHHHHHHHHHhc
Confidence 8888899999 6 899999999999999998875443 45567888888888766643 46899999999999
Q ss_pred CHHHHHHHHHHHHHHh
Q 003891 675 DVTALANLRMSLRDLM 690 (788)
Q Consensus 675 d~~~~~~~r~~~~~~~ 690 (788)
+++.+++|+++.++..
T Consensus 324 ~~~~l~~m~~~a~~~~ 339 (357)
T COG0707 324 NPEKLKAMAENAKKLG 339 (357)
T ss_pred CHHHHHHHHHHHHhcC
Confidence 9999999999988653
No 314
>PLN02670 transferase, transferring glycosyl groups
Probab=97.88 E-value=0.00041 Score=77.51 Aligned_cols=175 Identities=11% Similarity=0.041 Sum_probs=108.6
Q ss_pred CCCeEEEecCCCCcCCHHHHHHHHHHHhHcCCcEEEEecCCCCC-----HHHHHHHHHHHHHcCCCCCcEEEcCCcCCcH
Q 003891 524 NGFITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFCC-----DSVRHRFLSTLEQLGLESLRVDLLPLILLNH 598 (788)
Q Consensus 524 ~~~~~f~~~~~~~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~-----~~~~~~l~~~~~~~gi~~~rv~~~~~~~~~~ 598 (788)
...|+|.||++...++++-++-.+.-|...|..-||.+..+... +...+.+.++.+..| +++.+++| +.
T Consensus 277 ~~sVvyvsfGS~~~l~~~q~~ela~gl~~s~~~FlWv~r~~~~~~~~~~~~lp~~f~~~~~~rG-----~vv~~W~P-Q~ 350 (472)
T PLN02670 277 VNSVVYVALGTEASLRREEVTELALGLEKSETPFFWVLRNEPGTTQNALEMLPDGFEERVKGRG-----MIHVGWVP-QV 350 (472)
T ss_pred CCceEEEEecccccCCHHHHHHHHHHHHHCCCCEEEEEcCCcccccchhhcCChHHHHhccCCC-----eEEeCcCC-HH
Confidence 35689999999999999999999999999999999987643111 012233443332222 56678888 56
Q ss_pred HHHHhcccccEeecCCCCCCchhHHHHhhhCCceeecCCCccCccchhHHHhhhCCccccc-------CCHHHHHHHHHH
Q 003891 599 DHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIA-------KNEDEYVQLALQ 671 (788)
Q Consensus 599 ~~~~~~~~~Dv~Ld~~~~~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l~~~gl~~~ia-------~~~~~y~~~a~~ 671 (788)
+.+.- ..+..|+ ..+|.+|++||+++|||+|+++-- .-....+.++...|+.--+. -+.++..+...+
T Consensus 351 ~IL~H-~~v~~Fv---tHcGwnS~~Eai~~GVP~l~~P~~-~DQ~~Na~~v~~~g~Gv~l~~~~~~~~~~~e~i~~av~~ 425 (472)
T PLN02670 351 KILSH-ESVGGFL---THCGWNSVVEGLGFGRVLILFPVL-NEQGLNTRLLHGKKLGLEVPRDERDGSFTSDSVAESVRL 425 (472)
T ss_pred HHhcC-cccceee---ecCCcchHHHHHHcCCCEEeCcch-hccHHHHHHHHHcCeeEEeeccccCCcCcHHHHHHHHHH
Confidence 65533 4445566 247888999999999999999831 11223344444455553331 256677777777
Q ss_pred HhcCHHHHHHHHHHHH---HHhhcCCCCChHHHHHHHHHHHHHH
Q 003891 672 LASDVTALANLRMSLR---DLMSKSPVCDGQNFALGLESTYRNM 712 (788)
Q Consensus 672 l~~d~~~~~~~r~~~~---~~~~~~~~~~~~~~~~~~e~~~~~~ 712 (788)
+..|++ -..+|++++ +.+... -.....++.+++.+..+
T Consensus 426 vm~~~~-g~~~r~~a~~l~~~~~~~--~~~~~~~~~~~~~l~~~ 466 (472)
T PLN02670 426 AMVDDA-GEEIRDKAKEMRNLFGDM--DRNNRYVDELVHYLREN 466 (472)
T ss_pred HhcCcc-hHHHHHHHHHHHHHHhCc--chhHHHHHHHHHHHHHh
Confidence 776642 123344333 333222 24567777777766553
No 315
>COG1819 Glycosyl transferases, related to UDP-glucuronosyltransferase [Carbohydrate transport and metabolism / Signal transduction mechanisms]
Probab=97.88 E-value=0.00083 Score=74.09 Aligned_cols=165 Identities=15% Similarity=0.146 Sum_probs=110.1
Q ss_pred CCCCCeEEEecCCCCcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHHH
Q 003891 522 LTNGFITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHM 601 (788)
Q Consensus 522 ~~~~~~~f~~~~~~~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~~~~l~~~~~~~gi~~~rv~~~~~~~~~~~~~ 601 (788)
..+..++|-++++..-. .++++...+.+...|...++-.+.. +. ...++ ++.+...++++ ..+
T Consensus 234 ~~d~~~vyvslGt~~~~-~~l~~~~~~a~~~l~~~vi~~~~~~------~~------~~~~~-p~n~~v~~~~p-~~~-- 296 (406)
T COG1819 234 PADRPIVYVSLGTVGNA-VELLAIVLEALADLDVRVIVSLGGA------RD------TLVNV-PDNVIVADYVP-QLE-- 296 (406)
T ss_pred cCCCCeEEEEcCCcccH-HHHHHHHHHHHhcCCcEEEEecccc------cc------ccccC-CCceEEecCCC-HHH--
Confidence 34566777777766433 7777777777777765555544321 00 12244 47888888887 444
Q ss_pred HhcccccEeecCCCCCCchhHHHHhhhCCceeecCCCccCccchhHHHhhhCCccccc---CCHHHHHHHHHHHhcCHHH
Q 003891 602 QAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIA---KNEDEYVQLALQLASDVTA 678 (788)
Q Consensus 602 ~~~~~~Dv~Ld~~~~~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l~~~gl~~~ia---~~~~~y~~~a~~l~~d~~~ 678 (788)
.+..+|+++ .-||.+||.|||..|||+|.+++. +-.-.-|.-+..+|....+- .+++...+...++.+|...
T Consensus 297 -~l~~ad~vI---~hGG~gtt~eaL~~gvP~vv~P~~-~DQ~~nA~rve~~G~G~~l~~~~l~~~~l~~av~~vL~~~~~ 371 (406)
T COG1819 297 -LLPRADAVI---HHGGAGTTSEALYAGVPLVVIPDG-ADQPLNAERVEELGAGIALPFEELTEERLRAAVNEVLADDSY 371 (406)
T ss_pred -HhhhcCEEE---ecCCcchHHHHHHcCCCEEEecCC-cchhHHHHHHHHcCCceecCcccCCHHHHHHHHHHHhcCHHH
Confidence 455599998 237788999999999999999976 33444667777888886664 5778888888888888877
Q ss_pred HHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHH
Q 003891 679 LANLRMSLRDLMSKSPVCDGQNFALGLESTYRN 711 (788)
Q Consensus 679 ~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~~ 711 (788)
++..+.-. +.+... ...+..++.+|+..++
T Consensus 372 ~~~~~~~~-~~~~~~--~g~~~~a~~le~~~~~ 401 (406)
T COG1819 372 RRAAERLA-EEFKEE--DGPAKAADLLEEFARE 401 (406)
T ss_pred HHHHHHHH-HHhhhc--ccHHHHHHHHHHHHhc
Confidence 66644443 333322 2355577777776543
No 316
>PLN03064 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=97.84 E-value=0.00051 Score=81.78 Aligned_cols=177 Identities=16% Similarity=0.116 Sum_probs=122.6
Q ss_pred CCeEEEecCCC--CcCCHHHHHHHHHHHhHcCCcE----EEEecCCCC-CHHHHHHHHHHHH--------HcCCC-CCcE
Q 003891 525 GFITFGSFNNL--AKITPKVLQVWARILCAVPNSR----LVVKCKPFC-CDSVRHRFLSTLE--------QLGLE-SLRV 588 (788)
Q Consensus 525 ~~~~f~~~~~~--~K~~~~~~~~~~~il~~~p~~~----l~l~~~~~~-~~~~~~~l~~~~~--------~~gi~-~~rv 588 (788)
|..++.++.++ .|..+.-+.+|.+.|...|+-+ |+-+..|.. .-+..+.+++.+. ++|-. -.-|
T Consensus 362 g~kiIlgVDRLD~~KGI~~kL~AfE~fL~~~Pe~r~kVVLvQIa~psr~~v~eY~~l~~~V~~~V~rIN~~fg~~~w~Pv 441 (934)
T PLN03064 362 GRKVMLGVDRLDMIKGIPQKILAFEKFLEENPEWRDKVVLLQIAVPTRTDVPEYQKLTSQVHEIVGRINGRFGTLTAVPI 441 (934)
T ss_pred CceEEEEeeccccccCHHHHHHHHHHHHHhCccccCCEEEEEEcCCCCCCcHHHHHHHHHHHHHHHHHhhhccCCCcceE
Confidence 34467788887 8999999999999999999843 443443322 2133344444442 23322 1125
Q ss_pred EEcCCcCCcHHHHHhcccccEeecCCCC-CCchhHHHHhhh-----CCceeecCCCccCccch-h-HHHhhhCCcccc--
Q 003891 589 DLLPLILLNHDHMQAYSLMDISLDTFPY-AGTTTTCESLYM-----GVPCVTMAGSVHAHNVG-V-SLLTKVGLKHLI-- 658 (788)
Q Consensus 589 ~~~~~~~~~~~~~~~~~~~Dv~Ld~~~~-~g~~t~~eal~~-----GvPvvt~~g~~~~~r~~-~-~~l~~~gl~~~i-- 658 (788)
++....-+.+++.++|+.+||||.|+-. |-+.++.|+++| |++|+. .++ + ..| |-..++
T Consensus 442 ~~~~~~l~~eeL~AlY~~ADV~lvTslrDGmNLva~Eyva~~~~~~GvLILS--------EfaGaa~~L---~~~AllVN 510 (934)
T PLN03064 442 HHLDRSLDFHALCALYAVTDVALVTSLRDGMNLVSYEFVACQDSKKGVLILS--------EFAGAAQSL---GAGAILVN 510 (934)
T ss_pred EEeccCCCHHHHHHHHHhCCEEEeCccccccCchHHHHHHhhcCCCCCeEEe--------CCCchHHHh---CCceEEEC
Confidence 5554433479999999999999999988 558899999999 677773 333 2 122 222333
Q ss_pred cCCHHHHHHHHHHHhc-CHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHH
Q 003891 659 AKNEDEYVQLALQLAS-DVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRNMWHR 715 (788)
Q Consensus 659 a~~~~~y~~~a~~l~~-d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~ 715 (788)
..|.++.++...+.++ ++++++++.+++++.+.+ +|...|++.|.+.+...|..
T Consensus 511 P~D~~~vA~AI~~AL~M~~~Er~~r~~~~~~~V~~---~d~~~Wa~~fl~~L~~~~~~ 565 (934)
T PLN03064 511 PWNITEVAASIAQALNMPEEEREKRHRHNFMHVTT---HTAQEWAETFVSELNDTVVE 565 (934)
T ss_pred CCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccc---CCHHHHHHHHHHHHHHHHhh
Confidence 3588888888877776 888888888888887654 68999999988888888754
No 317
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=97.84 E-value=0.0014 Score=70.64 Aligned_cols=190 Identities=14% Similarity=0.070 Sum_probs=114.5
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 003891 96 CNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGV 175 (788)
Q Consensus 96 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 175 (788)
..+..-..+..+.+.-++.-.+|++++|+...++..++. .......+|.++|+++++...... ....
T Consensus 172 q~IMq~AWRERnp~aRIkaA~eALei~pdCAdAYILLAE---------EeA~Ti~Eae~l~rqAvkAgE~~l----g~s~ 238 (539)
T PF04184_consen 172 QEIMQKAWRERNPQARIKAAKEALEINPDCADAYILLAE---------EEASTIVEAEELLRQAVKAGEASL----GKSQ 238 (539)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhhhhhhHHHhhccc---------ccccCHHHHHHHHHHHHHHHHHhh----chhh
Confidence 344445566677788888888888888877655443322 112346777788887776532211 0111
Q ss_pred HHHHcCChHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHcCCH
Q 003891 176 AYGEMLKFDMAIVFYELAFHFNPH--CAEACNNLGVIYKDRDNLDKAVECYQMALSIKPN--FSQSLNNLGVVYTVQGKM 251 (788)
Q Consensus 176 ~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~ 251 (788)
.....|.. -+....... ...+...+|.+..++|+.+||++.++..++..|. +..++.+|..++..++.|
T Consensus 239 ~~~~~g~~-------~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Y 311 (539)
T PF04184_consen 239 FLQHHGHF-------WEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAY 311 (539)
T ss_pred hhhcccch-------hhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCH
Confidence 11111111 011111111 1345567888888888888888888888877664 355788888888888888
Q ss_pred HHHHHHHHHHHHh-CCCCHHHHHHHHHHHHH-cCC---------------HHHHHHHHHHHHhhCCCChhh
Q 003891 252 DAAAEMIEKAIAA-NPTYAEAYNNLGVLYRD-AGS---------------ISLAIDAYEQCLKIDPDSRNA 305 (788)
Q Consensus 252 ~eA~~~l~kal~~-~p~~~~~~~~la~~~~~-~g~---------------~~eA~~~~~~al~l~p~~~~a 305 (788)
.++...+.+.-++ -|+.+...+.-+.+..+ .++ -..|.+.+.+|++.+|.-+..
T Consensus 312 ad~q~lL~kYdDi~lpkSAti~YTaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~Y 382 (539)
T PF04184_consen 312 ADVQALLAKYDDISLPKSATICYTAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKY 382 (539)
T ss_pred HHHHHHHHHhccccCCchHHHHHHHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchh
Confidence 8888888886443 25555555555444322 111 234678888888888886654
No 318
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=97.84 E-value=0.015 Score=63.10 Aligned_cols=260 Identities=12% Similarity=0.087 Sum_probs=146.7
Q ss_pred HHHHHcCChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHH
Q 003891 32 TSLKLAGNTQDGIQKYYEALKIDP-HYAPAYYNLGVVYSELMQYDTALGCYEKAALER--------PMYAEAYCNMGVIY 102 (788)
Q Consensus 32 ~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~--------p~~~~~~~~la~~~ 102 (788)
.+....|+++. +.+.+...+ +..+..+..+......++++++..+.+++...- .......+..-..+
T Consensus 6 eaaWrl~~Wd~----l~~~~~~~~~~~~~~~~~~al~~l~~~~~~~~~~~i~~~r~~~~~~l~~~~~~s~~~~y~~l~~l 81 (352)
T PF02259_consen 6 EAAWRLGDWDL----LEEYLSQSNEDSPEYSFYRALLALRQGDYDEAKKYIEKARQLLLDELSALSSESYQRAYPSLVKL 81 (352)
T ss_pred HHHHhcCChhh----HHHHHhhccCCChhHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 45566788888 333333322 233566666777778899999999998886531 11111111111122
Q ss_pred HHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhcCCH--HHHHHHHHHHHHh----CCCCHHHHHHHHHH
Q 003891 103 KNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDI--NQGVAYYKKALYY----NWHYADAMYNLGVA 176 (788)
Q Consensus 103 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~g~~--~~A~~~~~~al~~----~p~~~~~~~~la~~ 176 (788)
....+.+++..+....... ......+...+...-. ....++ -+-+-.++..+-. .......+...+.+
T Consensus 82 q~L~Elee~~~~~~~~~~~----~~~~~~l~~~W~~Rl~--~~~~~~~~~~~il~~R~~~l~~~~~~~~~~~~~l~~a~~ 155 (352)
T PF02259_consen 82 QQLVELEEIIELKSNLSQN----PQDLKSLLKRWRSRLP--NMQDDFSVWEPILSLRRLVLSLILLPEELAETWLKFAKL 155 (352)
T ss_pred hHHHHHHHHHHHHHhhccc----HHHHHHHHHHHHHHHH--HhccchHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHH
Confidence 2223334444433221110 1111111111111000 001111 1111122222222 33455678888888
Q ss_pred HHHcCChHHHHHHHHHHHhcCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CC-C-----------------
Q 003891 177 YGEMLKFDMAIVFYELAFHFNPH----CAEACNNLGVIYKDRDNLDKAVECYQMALSI-KP-N----------------- 233 (788)
Q Consensus 177 ~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~la~~~~~~g~~~eA~~~~~~al~~-~p-~----------------- 233 (788)
..+.|+++.|...+.++...++. .+.+....+.++...|+..+|+..++..++. .. .
T Consensus 156 aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (352)
T PF02259_consen 156 ARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNAELKSGLLESL 235 (352)
T ss_pred HHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHHHHhhcccccc
Confidence 88999999998888888876421 4677778888888889989998888887761 10 0
Q ss_pred ---------------CHHHHHHHHHHHHHc------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC--------
Q 003891 234 ---------------FSQSLNNLGVVYTVQ------GKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGS-------- 284 (788)
Q Consensus 234 ---------------~~~~~~~la~~~~~~------g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~-------- 284 (788)
...++..+|...... ++.++++..|+++++.+|+...+|+.+|..+...=+
T Consensus 236 ~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~~~~~~~~~~~~ 315 (352)
T PF02259_consen 236 EVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFNDKLLESDPREKEE 315 (352)
T ss_pred ccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHhhhhcccc
Confidence 022555666666666 778888888888888888888888888877654311
Q ss_pred ---------HHHHHHHHHHHHhhCCC
Q 003891 285 ---------ISLAIDAYEQCLKIDPD 301 (788)
Q Consensus 285 ---------~~eA~~~~~~al~l~p~ 301 (788)
...|+..|-+++...++
T Consensus 316 ~~~~~~~~~~~~ai~~y~~al~~~~~ 341 (352)
T PF02259_consen 316 SSQEDRSEYLEQAIEGYLKALSLGSK 341 (352)
T ss_pred cchhHHHHHHHHHHHHHHHHHhhCCC
Confidence 12355666666666555
No 319
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.83 E-value=0.0004 Score=72.66 Aligned_cols=135 Identities=9% Similarity=0.041 Sum_probs=106.6
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 003891 169 AMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKD-RDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTV 247 (788)
Q Consensus 169 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~ 247 (788)
+|..+.....+.+..+.|...|+++.+..+....+|...|.+-.. .++.+.|.+.|+.+++..|.+...|......+..
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~ 82 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIK 82 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 455666667777778889999999986666678888888888666 4556669999999999999999988888888889
Q ss_pred cCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCh
Q 003891 248 QGKMDAAAEMIEKAIAANPTYA---EAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSR 303 (788)
Q Consensus 248 ~g~~~eA~~~l~kal~~~p~~~---~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~ 303 (788)
.++.+.|...|++++..-+... .+|......-.+.|+.+...+.++++.+..|++.
T Consensus 83 ~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~ 141 (280)
T PF05843_consen 83 LNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDN 141 (280)
T ss_dssp TT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-
T ss_pred hCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhh
Confidence 9999999999999988766554 5788888888899999999999999999988843
No 320
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.83 E-value=0.0014 Score=66.71 Aligned_cols=162 Identities=14% Similarity=-0.008 Sum_probs=126.8
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHh-CCCC---HHHH
Q 003891 95 YCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYY-NWHY---ADAM 170 (788)
Q Consensus 95 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~-~p~~---~~~~ 170 (788)
....+.+....|++.+|....++.++-.|.+..++..--.+++. .|+...-...+++.+.. +++. ..+.
T Consensus 106 ~h~~aai~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy-------~G~~~~~k~ai~kIip~wn~dlp~~sYv~ 178 (491)
T KOG2610|consen 106 RHAKAAILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFY-------NGNQIGKKNAIEKIIPKWNADLPCYSYVH 178 (491)
T ss_pred hhhhHHHhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHh-------ccchhhhhhHHHHhccccCCCCcHHHHHH
Confidence 34456677788999999999999999999987555444444444 55888888888888876 6555 3445
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC----HHHHHHHHHHHH
Q 003891 171 YNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNF----SQSLNNLGVVYT 246 (788)
Q Consensus 171 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~----~~~~~~la~~~~ 246 (788)
-.++..+.+.|-|++|.+.-++++++++.+..+...++.++...++++++.+++.+.-..-... ..-|...+.++.
T Consensus 179 GmyaFgL~E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~i 258 (491)
T KOG2610|consen 179 GMYAFGLEECGIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHI 258 (491)
T ss_pred HHHHhhHHHhccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhh
Confidence 5677888999999999999999999999999999999999999999999999988754332211 113456678888
Q ss_pred HcCCHHHHHHHHHHHHH
Q 003891 247 VQGKMDAAAEMIEKAIA 263 (788)
Q Consensus 247 ~~g~~~eA~~~l~kal~ 263 (788)
+.+.|+.|+++|.+-+-
T Consensus 259 E~aeye~aleIyD~ei~ 275 (491)
T KOG2610|consen 259 EGAEYEKALEIYDREIW 275 (491)
T ss_pred cccchhHHHHHHHHHHH
Confidence 88999999999987653
No 321
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.82 E-value=0.0088 Score=68.91 Aligned_cols=252 Identities=24% Similarity=0.294 Sum_probs=172.2
Q ss_pred HcCChHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC
Q 003891 36 LAGNTQDGIQKYYEALKI-----DPHYAPAYYNLGVVYSELM-----QYDTALGCYEKAALERPMYAEAYCNMGVIYKNR 105 (788)
Q Consensus 36 ~~g~~~~A~~~~~~al~~-----~p~~~~~~~~lg~~~~~~g-----~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~ 105 (788)
...|.++|+.+|+.+.+. .-.++.+.+.+|.+|.+.. +++.|+.+|.++-+.. ++.+.+.+|.++..-
T Consensus 261 ~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g--~~~a~~~lg~~~~~g 338 (552)
T KOG1550|consen 261 VTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELG--NPDAQYLLGVLYETG 338 (552)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcC--CchHHHHHHHHHHcC
Confidence 346899999999998771 1225667889999998743 7788999999987764 567888899988876
Q ss_pred C---CHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-C
Q 003891 106 G---DLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEM-L 181 (788)
Q Consensus 106 g---~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-g 181 (788)
. ++..|.++|..|.+.. +..+.+.++.++.. | .....+...|..+++++.+.+ .+.+...++..+... +
T Consensus 339 ~~~~d~~~A~~yy~~Aa~~G--~~~A~~~la~~y~~-G--~gv~r~~~~A~~~~k~aA~~g--~~~A~~~~~~~~~~g~~ 411 (552)
T KOG1550|consen 339 TKERDYRRAFEYYSLAAKAG--HILAIYRLALCYEL-G--LGVERNLELAFAYYKKAAEKG--NPSAAYLLGAFYEYGVG 411 (552)
T ss_pred CccccHHHHHHHHHHHHHcC--ChHHHHHHHHHHHh-C--CCcCCCHHHHHHHHHHHHHcc--ChhhHHHHHHHHHHccc
Confidence 6 6789999999987653 44566666655543 3 334568899999999999887 455555555544333 7
Q ss_pred ChHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc----C
Q 003891 182 KFDMAIVFYELAFHFNPHC----AEACNNLGVIYKD----RDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQ----G 249 (788)
Q Consensus 182 ~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~----~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~----g 249 (788)
.++.+.-.+.......-.. ...+......... ..+...+...+.++.. ..+..+...+|.+|..- .
T Consensus 412 ~~~~~~~~~~~~a~~g~~~~q~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~--~g~~~a~~~lgd~y~~g~g~~~ 489 (552)
T KOG1550|consen 412 RYDTALALYLYLAELGYEVAQSNAAYLLDQSEEDLFSRGVISTLERAFSLYSRAAA--QGNADAILKLGDYYYYGLGTGR 489 (552)
T ss_pred cccHHHHHHHHHHHhhhhHHhhHHHHHHHhccccccccccccchhHHHHHHHHHHh--ccCHHHHhhhcceeeecCCCCC
Confidence 7777766665554432221 1111111111111 1245556666666543 45677888888888764 4
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc---CCHHHHHHHHHHHHhhCCC
Q 003891 250 KMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDA---GSISLAIDAYEQCLKIDPD 301 (788)
Q Consensus 250 ~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~---g~~~eA~~~~~~al~l~p~ 301 (788)
+++.|...|.++.... ....+++|.++..- .....|..+|.++.+.+..
T Consensus 490 d~~~a~~~y~~a~~~~---~~~~~nlg~~~e~g~g~~~~~~a~~~~~~~~~~~~~ 541 (552)
T KOG1550|consen 490 DPEKAAAQYARASEQG---AQALFNLGYMHEHGEGIKVLHLAKRYYDQASEEDSR 541 (552)
T ss_pred ChHHHHHHHHHHHHhh---hHHHhhhhhHHhcCcCcchhHHHHHHHHHHHhcCch
Confidence 6999999999998877 88899999988752 1278899999998877654
No 322
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=97.81 E-value=0.033 Score=65.29 Aligned_cols=286 Identities=14% Similarity=0.026 Sum_probs=185.6
Q ss_pred CHHHHHHHHHHcCCCChhhHHHHHHHHHHHHHHHH-HcCChHHHHHHHHHHHHhCCC--C----HHHHHHHHHHHHHcCC
Q 003891 1 MLVASYHKALSADPSYKPAAECLAIVLTDLGTSLK-LAGNTQDGIQKYYEALKIDPH--Y----APAYYNLGVVYSELMQ 73 (788)
Q Consensus 1 ~Ai~~~~kaL~~~P~~~~a~~~la~~l~~lg~~~~-~~g~~~~A~~~~~~al~~~p~--~----~~~~~~lg~~~~~~g~ 73 (788)
+|+++++-+++..+=. ...-+.+.+.+|.+++ ...++++|..++++++.+... . ..+.+.++.++.+.+.
T Consensus 39 ~ai~CL~~~~~~~~l~---p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~ 115 (608)
T PF10345_consen 39 TAIKCLEAVLKQFKLS---PRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNP 115 (608)
T ss_pred HHHHHHHHHhccCCCC---HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCH
Confidence 4788888888622222 2345677888898887 678999999999999887643 2 2345677888888887
Q ss_pred HHHHHHHHHHHHHhCCC---C-HHHHHHH--HHHHHHCCCHHHHHHHHHHHHhhCC--CcHHHHHHHHHHHHHhhhhhhh
Q 003891 74 YDTALGCYEKAALERPM---Y-AEAYCNM--GVIYKNRGDLESAIACYERCLAVSP--NFEIAKNNMAIALTDLGTKVKL 145 (788)
Q Consensus 74 ~~~A~~~~~kal~~~p~---~-~~~~~~l--a~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~la~~l~~lg~~~~~ 145 (788)
.. |...+++.++.... . ....+.+ ...+...+++..|++.++....... .+.... ..+....+.+...
T Consensus 116 ~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~---v~~~l~~~~l~l~ 191 (608)
T PF10345_consen 116 KA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVF---VLASLSEALLHLR 191 (608)
T ss_pred HH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHH---HHHHHHHHHHHhc
Confidence 77 99999999886544 1 2222222 3333334799999999999988763 333222 2233334455566
Q ss_pred cCCHHHHHHHHHHHHHhCC------C----CHHHHHHHHH--HHHHcCChHHHHHHHHHHHh---c---CC---C---C-
Q 003891 146 EGDINQGVAYYKKALYYNW------H----YADAMYNLGV--AYGEMLKFDMAIVFYELAFH---F---NP---H---C- 200 (788)
Q Consensus 146 ~g~~~~A~~~~~~al~~~p------~----~~~~~~~la~--~~~~~g~~~~A~~~~~~al~---~---~p---~---~- 200 (788)
.+..+++++..+++..... + ...++..+-. ++...|+++.+...+++.-+ . .+ . +
T Consensus 192 ~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~~~~~~w~~~~~d~ 271 (608)
T PF10345_consen 192 RGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDEIKKSPSWPSWDEDG 271 (608)
T ss_pred CCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCccCCCcCCCe
Confidence 7777788888877744321 1 1223333332 44566776666665544322 1 11 0 0
Q ss_pred -----------------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC----------C-------
Q 003891 201 -----------------------------AEACNNLGVIYKDRDNLDKAVECYQMALSIKPN----------F------- 234 (788)
Q Consensus 201 -----------------------------~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~----------~------- 234 (788)
.-+|..-|......+..++|.++++++++.-.+ .
T Consensus 272 ~i~l~~~~~~~~~~~~~~~f~wl~~~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~ 351 (608)
T PF10345_consen 272 SIPLNIGEGSSNSGGTPLVFSWLPKEELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASE 351 (608)
T ss_pred eEEeecccccccCCCceeEEeecCHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHH
Confidence 112333355666677777888888888764111 0
Q ss_pred ---------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CC------CHHHHHHHHHHHHHcCCHHHHHHHHH
Q 003891 235 ---------SQSLNNLGVVYTVQGKMDAAAEMIEKAIAAN---PT------YAEAYNNLGVLYRDAGSISLAIDAYE 293 (788)
Q Consensus 235 ---------~~~~~~la~~~~~~g~~~eA~~~l~kal~~~---p~------~~~~~~~la~~~~~~g~~~eA~~~~~ 293 (788)
......++.+..-.+++.+|....+.+.... |. .+..++..|..+...|+.+.|..+|.
T Consensus 352 ~~~~~~~l~~~~~~y~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~ 428 (608)
T PF10345_consen 352 RIQWLRYLQCYLLFYQIWCNFIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQ 428 (608)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHh
Confidence 0134556677778999999999988877653 22 36788999999999999999999998
No 323
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=97.80 E-value=0.0014 Score=70.71 Aligned_cols=224 Identities=14% Similarity=0.010 Sum_probs=148.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhh
Q 003891 62 YNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGT 141 (788)
Q Consensus 62 ~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~ 141 (788)
..+..-..+..+.++-++...+|++++|+.+.+|..|+.- ......+|+++|+++++.....-. .......
T Consensus 172 q~IMq~AWRERnp~aRIkaA~eALei~pdCAdAYILLAEE--eA~Ti~Eae~l~rqAvkAgE~~lg----~s~~~~~--- 242 (539)
T PF04184_consen 172 QEIMQKAWRERNPQARIKAAKEALEINPDCADAYILLAEE--EASTIVEAEELLRQAVKAGEASLG----KSQFLQH--- 242 (539)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhhhhhhHHHhhcccc--cccCHHHHHHHHHHHHHHHHHhhc----hhhhhhc---
Confidence 3445555678889999999999999999999999888752 234578899999998876443210 0000000
Q ss_pred hhhhcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHcCCH
Q 003891 142 KVKLEGDINQGVAYYKKALYYNWH--YADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPH--CAEACNNLGVIYKDRDNL 217 (788)
Q Consensus 142 ~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~ 217 (788)
.|.. -........ ...+...+|.+..+.|+.++|++.++..++.+|. +..++.++..++...+.|
T Consensus 243 ----~g~~-------~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Y 311 (539)
T PF04184_consen 243 ----HGHF-------WEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAY 311 (539)
T ss_pred ----ccch-------hhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCH
Confidence 1111 111111111 2345567888899999999999999999887764 466888999999999999
Q ss_pred HHHHHHHHHHHhh-CCCCHHHHHHHHHHHHH-cCC---------------HHHHHHHHHHHHHhCCCCHHHHHHHHH---
Q 003891 218 DKAVECYQMALSI-KPNFSQSLNNLGVVYTV-QGK---------------MDAAAEMIEKAIAANPTYAEAYNNLGV--- 277 (788)
Q Consensus 218 ~eA~~~~~~al~~-~p~~~~~~~~la~~~~~-~g~---------------~~eA~~~l~kal~~~p~~~~~~~~la~--- 277 (788)
.++...+.+.-++ -|..+...+.-+.+..+ .++ -..|.+.+.+|++.+|.-+..+..+-.
T Consensus 312 ad~q~lL~kYdDi~lpkSAti~YTaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~YLLe~K~Lil 391 (539)
T PF04184_consen 312 ADVQALLAKYDDISLPKSATICYTAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKYLLEMKSLIL 391 (539)
T ss_pred HHHHHHHHHhccccCCchHHHHHHHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchhhhccCCCCC
Confidence 9999888886443 25556655555544322 111 234778899999999988776554322
Q ss_pred ---HHHHcCCHHHHHHHHHHHHhhCCCChhhH
Q 003891 278 ---LYRDAGSISLAIDAYEQCLKIDPDSRNAG 306 (788)
Q Consensus 278 ---~~~~~g~~~eA~~~~~~al~l~p~~~~a~ 306 (788)
-+.+.|+ .||+.+---.++.-.+-..+.
T Consensus 392 PPehilkrGD-SEAiaYAf~hL~hWk~veGAL 422 (539)
T PF04184_consen 392 PPEHILKRGD-SEAIAYAFFHLQHWKRVEGAL 422 (539)
T ss_pred ChHHhcCCCc-HHHHHHHHHHHHHHhcCHhHH
Confidence 2445565 788888777777665555554
No 324
>PLN02410 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=97.75 E-value=0.00083 Score=74.95 Aligned_cols=141 Identities=16% Similarity=0.076 Sum_probs=91.6
Q ss_pred CCCeEEEecCCCCcCCHHHHHHHHHHHhHcCCcEEEEecCCCC-CHH----HHHHHHHHHHHcCCCCCcEEEcCCcCCcH
Q 003891 524 NGFITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFC-CDS----VRHRFLSTLEQLGLESLRVDLLPLILLNH 598 (788)
Q Consensus 524 ~~~~~f~~~~~~~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~-~~~----~~~~l~~~~~~~gi~~~rv~~~~~~~~~~ 598 (788)
.+.|+|.||++..+++++.++-.+.-|...+..-||.+..+.. ++. ....+.++ + .+|..+.+++| +.
T Consensus 263 ~~sVvyvsfGS~~~~~~~q~~ela~gLe~s~~~FlWv~r~~~~~~~~~~~~lp~~f~er-----~-~~~g~v~~w~P-Q~ 335 (451)
T PLN02410 263 KNSVIFVSLGSLALMEINEVMETASGLDSSNQQFLWVIRPGSVRGSEWIESLPKEFSKI-----I-SGRGYIVKWAP-QK 335 (451)
T ss_pred CCcEEEEEccccccCCHHHHHHHHHHHHhcCCCeEEEEccCcccccchhhcCChhHHHh-----c-cCCeEEEccCC-HH
Confidence 4569999999999999999999999999999988998763311 111 12233332 2 26777789988 56
Q ss_pred HHHHhcccccEeecCCCCCCchhHHHHhhhCCceeecCCCccCccchhHHHhhh-CCcccc--cCCHHHHHHHHHHHhcC
Q 003891 599 DHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKV-GLKHLI--AKNEDEYVQLALQLASD 675 (788)
Q Consensus 599 ~~~~~~~~~Dv~Ld~~~~~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l~~~-gl~~~i--a~~~~~y~~~a~~l~~d 675 (788)
+.+. ...+..|+ ..+|-+|++||+++|||+|+++--. -....+..+... |+.--+ .-+.++..+...++..|
T Consensus 336 ~iL~-h~~v~~fv---tH~G~nS~~Ea~~~GvP~l~~P~~~-DQ~~na~~~~~~~~~G~~~~~~~~~~~v~~av~~lm~~ 410 (451)
T PLN02410 336 EVLS-HPAVGGFW---SHCGWNSTLESIGEGVPMICKPFSS-DQKVNARYLECVWKIGIQVEGDLDRGAVERAVKRLMVE 410 (451)
T ss_pred HHhC-CCccCeee---ecCchhHHHHHHHcCCCEEeccccc-cCHHHHHHHHHHhCeeEEeCCcccHHHHHHHHHHHHcC
Confidence 6554 34455676 2477889999999999999988411 122333333221 332111 12666776666677766
Q ss_pred H
Q 003891 676 V 676 (788)
Q Consensus 676 ~ 676 (788)
+
T Consensus 411 ~ 411 (451)
T PLN02410 411 E 411 (451)
T ss_pred C
Confidence 5
No 325
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.74 E-value=0.0083 Score=64.07 Aligned_cols=192 Identities=15% Similarity=0.064 Sum_probs=122.5
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHH---CCCHHHHHHHHHHHH-hhCCCcHHH
Q 003891 57 YAPAYYNLGVVYSELMQYDTALGCYEKAALE----RPMYAEAYCNMGVIYKN---RGDLESAIACYERCL-AVSPNFEIA 128 (788)
Q Consensus 57 ~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~----~p~~~~~~~~la~~~~~---~g~~~~A~~~~~~al-~~~p~~~~~ 128 (788)
.++...++-.+|....+|+.-+++.+..-.. -++...+.+.+|.++.+ .|+.++|+..+..++ ...+.+++.
T Consensus 140 s~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~ 219 (374)
T PF13281_consen 140 SPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDT 219 (374)
T ss_pred ChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHH
Confidence 4567778888899999999999999887665 44567788889999999 999999999999944 455666777
Q ss_pred HHHHHHHHHHhhhh--hhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHH
Q 003891 129 KNNMAIALTDLGTK--VKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNN 206 (788)
Q Consensus 129 ~~~la~~l~~lg~~--~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 206 (788)
+...+.+|..+-.. +......++|+..|.++.+.+|+. ..-.|++.++...|...+....+++.. ..
T Consensus 220 ~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~-Y~GIN~AtLL~~~g~~~~~~~el~~i~----------~~ 288 (374)
T PF13281_consen 220 LGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDY-YSGINAATLLMLAGHDFETSEELRKIG----------VK 288 (374)
T ss_pred HHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccc-cchHHHHHHHHHcCCcccchHHHHHHH----------HH
Confidence 77777777665322 122345788888888888888543 333455555555554333222222211 11
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 003891 207 LGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEA 271 (788)
Q Consensus 207 la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~ 271 (788)
+...+.+.|..+ .-.+...+..++.+..-.|++++|++++++++++.|.....
T Consensus 289 l~~llg~kg~~~------------~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W~l 341 (374)
T PF13281_consen 289 LSSLLGRKGSLE------------KMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPAWEL 341 (374)
T ss_pred HHHHHHhhcccc------------ccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcchhH
Confidence 111222222111 12233444556666777778888888888887777665443
No 326
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.72 E-value=0.00038 Score=70.81 Aligned_cols=117 Identities=21% Similarity=0.159 Sum_probs=100.4
Q ss_pred HHHHcCCCChhhHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 003891 8 KALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPH----YAPAYYNLGVVYSELMQYDTALGCYEK 83 (788)
Q Consensus 8 kaL~~~P~~~~a~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~lg~~~~~~g~~~~A~~~~~k 83 (788)
++|+.+|...+- ...|.-+-.-|+-|++.++|..|+.+|.+.|+..-. ++..|.+.+-+.+..|+|..|+.-..+
T Consensus 66 qslK~da~E~ep-~E~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~ 144 (390)
T KOG0551|consen 66 QSLKADAEEGEP-HEQAENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSA 144 (390)
T ss_pred HHhhhccccCCh-HHHHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 445555443332 237888999999999999999999999999998433 467889999999999999999999999
Q ss_pred HHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCc
Q 003891 84 AALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNF 125 (788)
Q Consensus 84 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 125 (788)
++..+|.+..+++.-+.|++.+.++.+|...++..++++.+.
T Consensus 145 al~~~P~h~Ka~~R~Akc~~eLe~~~~a~nw~ee~~~~d~e~ 186 (390)
T KOG0551|consen 145 ALKLKPTHLKAYIRGAKCLLELERFAEAVNWCEEGLQIDDEA 186 (390)
T ss_pred HHhcCcchhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhHHH
Confidence 999999999999999999999999999999999998776543
No 327
>PHA03392 egt ecdysteroid UDP-glucosyltransferase; Provisional
Probab=97.71 E-value=0.00091 Score=75.96 Aligned_cols=163 Identities=15% Similarity=0.131 Sum_probs=107.6
Q ss_pred CeEEEecCCCC---cCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHHHH
Q 003891 526 FITFGSFNNLA---KITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQ 602 (788)
Q Consensus 526 ~~~f~~~~~~~---K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~~~~l~~~~~~~gi~~~rv~~~~~~~~~~~~~~ 602 (788)
.++|.+|++.. +..++.++...+.+++.|.-.+|-.++.. .. .++ +++|.+.+++| +.+.+
T Consensus 297 g~V~vS~GS~~~~~~~~~~~~~~~l~a~~~l~~~viw~~~~~~-----~~--------~~~-p~Nv~i~~w~P-q~~lL- 360 (507)
T PHA03392 297 GVVYVSFGSSIDTNDMDNEFLQMLLRTFKKLPYNVLWKYDGEV-----EA--------INL-PANVLTQKWFP-QRAVL- 360 (507)
T ss_pred cEEEEECCCCCcCCCCCHHHHHHHHHHHHhCCCeEEEEECCCc-----Cc--------ccC-CCceEEecCCC-HHHHh-
Confidence 46788887764 56789999999999999975445433221 00 234 48999999988 56555
Q ss_pred hcccccEeecCCCCCCchhHHHHhhhCCceeecCCCccCccchhHHHhhhCCccccc---CCHHHHHHHHHHHhcCHHHH
Q 003891 603 AYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIA---KNEDEYVQLALQLASDVTAL 679 (788)
Q Consensus 603 ~~~~~Dv~Ld~~~~~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l~~~gl~~~ia---~~~~~y~~~a~~l~~d~~~~ 679 (788)
....+++|+ ..+|..|+.||+++|||+|.++--. -....+..+...|+...+- -+.++..+...++.+|+..+
T Consensus 361 ~hp~v~~fI---tHGG~~s~~Eal~~GvP~v~iP~~~-DQ~~Na~rv~~~G~G~~l~~~~~t~~~l~~ai~~vl~~~~y~ 436 (507)
T PHA03392 361 KHKNVKAFV---TQGGVQSTDEAIDALVPMVGLPMMG-DQFYNTNKYVELGIGRALDTVTVSAAQLVLAIVDVIENPKYR 436 (507)
T ss_pred cCCCCCEEE---ecCCcccHHHHHHcCCCEEECCCCc-cHHHHHHHHHHcCcEEEeccCCcCHHHHHHHHHHHhCCHHHH
Confidence 335688888 2477789999999999999988421 1223344455667654332 26788888888899998776
Q ss_pred HHHHHHHHHHhhcCCCCChHHHHHHHHHHH
Q 003891 680 ANLRMSLRDLMSKSPVCDGQNFALGLESTY 709 (788)
Q Consensus 680 ~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~ 709 (788)
+..++ +++.+...|.--.+..+..+|.+.
T Consensus 437 ~~a~~-ls~~~~~~p~~~~~~av~~iE~v~ 465 (507)
T PHA03392 437 KNLKE-LRHLIRHQPMTPLHKAIWYTEHVI 465 (507)
T ss_pred HHHHH-HHHHHHhCCCCHHHHHHHHHHHHH
Confidence 66544 333444444434466666666654
No 328
>PLN03004 UDP-glycosyltransferase
Probab=97.71 E-value=0.00074 Score=75.11 Aligned_cols=141 Identities=14% Similarity=0.110 Sum_probs=91.4
Q ss_pred CCCeEEEecCCCCcCCHHHHHHHHHHHhHcCCcEEEEecCCCCC-------HH-HHHHHHHHHHHcCCCCCcEEEcCCcC
Q 003891 524 NGFITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFCC-------DS-VRHRFLSTLEQLGLESLRVDLLPLIL 595 (788)
Q Consensus 524 ~~~~~f~~~~~~~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~-------~~-~~~~l~~~~~~~gi~~~rv~~~~~~~ 595 (788)
.+.|+|.||++...+.++-++-.+.-|...+..-||.+..+... .. ....+.++. ....+++.+++|
T Consensus 269 ~~sVvyvsfGS~~~~~~~q~~ela~gL~~s~~~FlW~~r~~~~~~~~~~~~~~~lp~gf~er~-----~~~g~~v~~W~P 343 (451)
T PLN03004 269 EKSVVFLCFGSLGLFSKEQVIEIAVGLEKSGQRFLWVVRNPPELEKTELDLKSLLPEGFLSRT-----EDKGMVVKSWAP 343 (451)
T ss_pred CCceEEEEecccccCCHHHHHHHHHHHHHCCCCEEEEEcCCccccccccchhhhCChHHHHhc-----cCCcEEEEeeCC
Confidence 45689999999999999999999999999999999988643110 00 112233332 214567778887
Q ss_pred CcHHHHHhcccccE--eecCCCCCCchhHHHHhhhCCceeecCCCccCccchhHHHh-hhCCccccc------CCHHHHH
Q 003891 596 LNHDHMQAYSLMDI--SLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLT-KVGLKHLIA------KNEDEYV 666 (788)
Q Consensus 596 ~~~~~~~~~~~~Dv--~Ld~~~~~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l~-~~gl~~~ia------~~~~~y~ 666 (788)
+.+.+.- .++ |+ ..+|.+|++||+++|||+|+++-- .-....+..+. .+|+.--+. -+.++..
T Consensus 344 -Q~~iL~H---~~v~~Fv---TH~G~nS~lEal~~GVP~v~~P~~-~DQ~~na~~~~~~~g~g~~l~~~~~~~~~~e~l~ 415 (451)
T PLN03004 344 -QVPVLNH---KAVGGFV---THCGWNSILEAVCAGVPMVAWPLY-AEQRFNRVMIVDEIKIAISMNESETGFVSSTEVE 415 (451)
T ss_pred -HHHHhCC---CccceEe---ccCcchHHHHHHHcCCCEEecccc-ccchhhHHHHHHHhCceEEecCCcCCccCHHHHH
Confidence 5665543 555 66 237788999999999999998831 11223333443 345442221 2566666
Q ss_pred HHHHHHhcCHH
Q 003891 667 QLALQLASDVT 677 (788)
Q Consensus 667 ~~a~~l~~d~~ 677 (788)
+...++..|++
T Consensus 416 ~av~~vm~~~~ 426 (451)
T PLN03004 416 KRVQEIIGECP 426 (451)
T ss_pred HHHHHHhcCHH
Confidence 66666666643
No 329
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.69 E-value=9.2e-05 Score=71.79 Aligned_cols=90 Identities=22% Similarity=0.226 Sum_probs=46.9
Q ss_pred HHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHH
Q 003891 174 GVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDA 253 (788)
Q Consensus 174 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~e 253 (788)
|..++...+|..|+..|.+++.++|..+..+.+.+.++++.++++.+..-..+++++.|+....++.+|.++.....|++
T Consensus 17 gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~e 96 (284)
T KOG4642|consen 17 GNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDE 96 (284)
T ss_pred cccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccH
Confidence 44444444555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHHHHHHHHH
Q 003891 254 AAEMIEKAIA 263 (788)
Q Consensus 254 A~~~l~kal~ 263 (788)
|+..++++..
T Consensus 97 aI~~Lqra~s 106 (284)
T KOG4642|consen 97 AIKVLQRAYS 106 (284)
T ss_pred HHHHHHHHHH
Confidence 5555555543
No 330
>PLN02992 coniferyl-alcohol glucosyltransferase
Probab=97.69 E-value=0.0012 Score=74.00 Aligned_cols=154 Identities=17% Similarity=0.138 Sum_probs=97.3
Q ss_pred CCCeEEEecCCCCcCCHHHHHHHHHHHhHcCCcEEEEecCCCCC---------------H----HHHHHHHHHHHHcCCC
Q 003891 524 NGFITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFCC---------------D----SVRHRFLSTLEQLGLE 584 (788)
Q Consensus 524 ~~~~~f~~~~~~~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~---------------~----~~~~~l~~~~~~~gi~ 584 (788)
.+.|+|.||++...++++-++-.+.-|...|...||.+..+... + ..-+.+.++.+.
T Consensus 262 ~~sVvyvsfGS~~~l~~~q~~ela~gL~~s~~~flW~~r~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~f~eR~~~---- 337 (481)
T PLN02992 262 NESVLYISFGSGGSLSAKQLTELAWGLEMSQQRFVWVVRPPVDGSACSAYFSANGGETRDNTPEYLPEGFVSRTHD---- 337 (481)
T ss_pred CCceEEEeecccccCCHHHHHHHHHHHHHcCCCEEEEEeCCcccccccccccCcccccccchhhhCCHHHHHHhcC----
Confidence 45689999999999999999999999999999999998432100 0 111233433322
Q ss_pred CCcEEEcCCcCCcHHHHHhcccccEeecCCCCCCchhHHHHhhhCCceeecCC--CccCccchhHHH-hhhCCccccc--
Q 003891 585 SLRVDLLPLILLNHDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAG--SVHAHNVGVSLL-TKVGLKHLIA-- 659 (788)
Q Consensus 585 ~~rv~~~~~~~~~~~~~~~~~~~Dv~Ld~~~~~g~~t~~eal~~GvPvvt~~g--~~~~~r~~~~~l-~~~gl~~~ia-- 659 (788)
..+++.+++| +.+.+.- ..+..|+ ..+|.+|++||+++|||+|+++- +.+ ..+..+ ..+|+.-.+.
T Consensus 338 -rg~vv~~W~P-Q~~iL~h-~~vg~Fi---tH~G~nS~~Eal~~GVP~l~~P~~~DQ~---~na~~~~~~~g~gv~~~~~ 408 (481)
T PLN02992 338 -RGFVVPSWAP-QAEILAH-QAVGGFL---THCGWSSTLESVVGGVPMIAWPLFAEQN---MNAALLSDELGIAVRSDDP 408 (481)
T ss_pred -CCEEEeecCC-HHHHhCC-cccCeeE---ecCchhHHHHHHHcCCCEEecCccchhH---HHHHHHHHHhCeeEEecCC
Confidence 3467788887 5555543 3333455 24778899999999999999883 322 233344 3555543331
Q ss_pred ---CCHHHHHHHHHHHhcCHH------HHHHHHHHHHHHh
Q 003891 660 ---KNEDEYVQLALQLASDVT------ALANLRMSLRDLM 690 (788)
Q Consensus 660 ---~~~~~y~~~a~~l~~d~~------~~~~~r~~~~~~~ 690 (788)
-+.++..+...++..+++ .-+++|+.+++.+
T Consensus 409 ~~~~~~~~l~~av~~vm~~~~g~~~r~~a~~~~~~a~~Av 448 (481)
T PLN02992 409 KEVISRSKIEALVRKVMVEEEGEEMRRKVKKLRDTAEMSL 448 (481)
T ss_pred CCcccHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHh
Confidence 256666666667766532 3344444455444
No 331
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.68 E-value=0.12 Score=55.65 Aligned_cols=291 Identities=15% Similarity=0.067 Sum_probs=175.1
Q ss_pred HHHHHHHHcCCCChhhHHHHHHHHHHHHHHHH-HcCChHHHHHHHHHHHHh----CCC-----------C-H--------
Q 003891 4 ASYHKALSADPSYKPAAECLAIVLTDLGTSLK-LAGNTQDGIQKYYEALKI----DPH-----------Y-A-------- 58 (788)
Q Consensus 4 ~~~~kaL~~~P~~~~a~~~la~~l~~lg~~~~-~~g~~~~A~~~~~~al~~----~p~-----------~-~-------- 58 (788)
....+..+....++.-...+-..|..+-.+|+ ..|+...+...+++.-.. .+. + +
T Consensus 191 ~~~~qi~~n~~sdk~~~E~LkvFyl~lql~yy~~~gq~rt~k~~lkQLQ~siqtist~~~~h~e~ilgsps~~l~~wlpk 270 (629)
T KOG2300|consen 191 QRCGQIWQNISSDKTQKEMLKVFYLVLQLSYYLLPGQVRTVKPALKQLQDSIQTISTSSRGHDEKILGSPSPILFEWLPK 270 (629)
T ss_pred HHHHHHHhccCCChHHHHHHHHHHHHHHHHHHhcccchhhhHHHHHHHHHHHhccCCCCCCccccccCCCChHHHhhccH
Confidence 34445555555555555556565655555544 457776666665543221 110 0 0
Q ss_pred ---HHHHHHH--HHHHHcCCHHHHHHHHHHHHHhCCC------C--------HHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q 003891 59 ---PAYYNLG--VVYSELMQYDTALGCYEKAALERPM------Y--------AEAYCNMGVIYKNRGDLESAIACYERCL 119 (788)
Q Consensus 59 ---~~~~~lg--~~~~~~g~~~~A~~~~~kal~~~p~------~--------~~~~~~la~~~~~~g~~~~A~~~~~~al 119 (788)
.++..+- .--...|-+++|.++-++++..... . ...+-.+..|-.-.|++.+|++....+.
T Consensus 271 eqicaLV~l~tv~hsm~~gy~~~~~K~tDe~i~q~eklkq~d~~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~ 350 (629)
T KOG2300|consen 271 EQICALVYLVTVIHSMPAGYFKKAQKYTDEAIKQTEKLKQADLMSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMK 350 (629)
T ss_pred hhhHhhhhhhHHhhhhhhHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 1111111 1112457788888888888764211 1 1234456677778899999999888877
Q ss_pred hhC---CCcHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHhCCC-C--HHHHHHHHHHHHHcCChHHHHHHHHHH
Q 003891 120 AVS---PNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWH-Y--ADAMYNLGVAYGEMLKFDMAIVFYELA 193 (788)
Q Consensus 120 ~~~---p~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~--~~~~~~la~~~~~~g~~~~A~~~~~~a 193 (788)
+.. |.-......-+.+..-+|......+.++.|...|..+.+.-.. + .....++|..|...++-+.-.+.++..
T Consensus 351 ~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~YL~~~~~ed~y~~ld~i 430 (629)
T KOG2300|consen 351 NWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAISYLRIGDAEDLYKALDLI 430 (629)
T ss_pred HHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHhccHHHHHHHHHhc
Confidence 654 4422334444667777787777788999999999988876433 2 234567888888877766544444433
Q ss_pred HhcCCC-------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 003891 194 FHFNPH-------CAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNF------SQSLNNLGVVYTVQGKMDAAAEMIEK 260 (788)
Q Consensus 194 l~~~p~-------~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~eA~~~l~k 260 (788)
-..+.. ...+++..|...+.++++.||...+.+.++..... .-.+..++.+....|+..++.+...-
T Consensus 431 ~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanaed~~rL~a~~LvLLs~v~lslgn~~es~nmvrp 510 (629)
T KOG2300|consen 431 GPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMANAEDLNRLTACSLVLLSHVFLSLGNTVESRNMVRP 510 (629)
T ss_pred CCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHhcchHHHHhccch
Confidence 222111 13466677777788888999988888888775211 22556677778888888888888777
Q ss_pred HHHhC---CCCHHH---HHHHHHHHHHcCC--HHHHHHHHHH
Q 003891 261 AIAAN---PTYAEA---YNNLGVLYRDAGS--ISLAIDAYEQ 294 (788)
Q Consensus 261 al~~~---p~~~~~---~~~la~~~~~~g~--~~eA~~~~~~ 294 (788)
++++. |+.+.. ...+-.+|...|+ .+...+.|.+
T Consensus 511 amqlAkKi~Di~vqLws~si~~~L~~a~g~~~~~~e~e~~~~ 552 (629)
T KOG2300|consen 511 AMQLAKKIPDIPVQLWSSSILTDLYQALGEKGNEMENEAFRK 552 (629)
T ss_pred HHHHHhcCCCchHHHHHHHHHHHHHHHhCcchhhHHHHHHHH
Confidence 77664 333322 2234556666666 4444444443
No 332
>PLN02863 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=97.67 E-value=0.00097 Score=75.00 Aligned_cols=104 Identities=13% Similarity=0.095 Sum_probs=75.2
Q ss_pred CCCeEEEecCCCCcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCH----HHHHHHHHHHHHcCCCCCcEEEcCCcCCcHH
Q 003891 524 NGFITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFCCD----SVRHRFLSTLEQLGLESLRVDLLPLILLNHD 599 (788)
Q Consensus 524 ~~~~~f~~~~~~~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~----~~~~~l~~~~~~~gi~~~rv~~~~~~~~~~~ 599 (788)
.+.|+|.||++...+.++.++-.+.-|...+...||.++.+.... .....+.++.. ...+++.+++| +.+
T Consensus 282 ~~svVyvsfGS~~~~~~~~~~ela~gL~~~~~~flw~~~~~~~~~~~~~~lp~~~~~r~~-----~~g~~v~~w~P-Q~~ 355 (477)
T PLN02863 282 DHKVVYVCFGSQVVLTKEQMEALASGLEKSGVHFIWCVKEPVNEESDYSNIPSGFEDRVA-----GRGLVIRGWAP-QVA 355 (477)
T ss_pred CCceEEEEeeceecCCHHHHHHHHHHHHhCCCcEEEEECCCcccccchhhCCHHHHHHhc-----cCCEEecCCCC-HHH
Confidence 356899999999999999999999999999998999887432110 11123333322 24577778987 555
Q ss_pred HHHhcccccEeecCCCCCCchhHHHHhhhCCceeecCC
Q 003891 600 HMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAG 637 (788)
Q Consensus 600 ~~~~~~~~Dv~Ld~~~~~g~~t~~eal~~GvPvvt~~g 637 (788)
.+. ...+++|+ ..+|.+|++||+++|||+|+++-
T Consensus 356 vL~-h~~v~~fv---tH~G~nS~~Eal~~GvP~l~~P~ 389 (477)
T PLN02863 356 ILS-HRAVGAFL---THCGWNSVLEGLVAGVPMLAWPM 389 (477)
T ss_pred Hhc-CCCcCeEE---ecCCchHHHHHHHcCCCEEeCCc
Confidence 554 34577887 24788899999999999999883
No 333
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=97.66 E-value=0.047 Score=63.11 Aligned_cols=234 Identities=15% Similarity=0.023 Sum_probs=154.1
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHhCCC---------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----HH
Q 003891 28 TDLGTSLKLAGNTQDGIQKYYEALKIDPH---------YAPAYYNLGVVYSELMQYDTALGCYEKAALERPMY-----AE 93 (788)
Q Consensus 28 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~---------~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~-----~~ 93 (788)
...+.....+.++.+|..+..++...-+. .++..-..|.+....|+.++|++..+.++..-|.+ ..
T Consensus 419 ll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~ 498 (894)
T COG2909 419 LLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIV 498 (894)
T ss_pred HHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhh
Confidence 33456667789999999999887765433 23455667888899999999999999999877653 46
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhcCCH--HHHHHHHHHHH----HhCCCCH
Q 003891 94 AYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDI--NQGVAYYKKAL----YYNWHYA 167 (788)
Q Consensus 94 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~g~~--~~A~~~~~~al----~~~p~~~ 167 (788)
++..+|.+..-.|++++|..+...+.+....+. .++....+....+.+...+|+. .+....+...- ...|...
T Consensus 499 ~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~-~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~ 577 (894)
T COG2909 499 ALSVLGEAAHIRGELTQALALMQQAEQMARQHD-VYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHE 577 (894)
T ss_pred hhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcc-cHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccch
Confidence 788899999999999999999999988865544 3333345556667777778832 33333333222 2233333
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhc----CCCC--H-HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HH-
Q 003891 168 DAMYNLGVAYGEMLKFDMAIVFYELAFHF----NPHC--A-EACNNLGVIYKDRDNLDKAVECYQMALSIKPNF---SQ- 236 (788)
Q Consensus 168 ~~~~~la~~~~~~g~~~~A~~~~~~al~~----~p~~--~-~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~---~~- 236 (788)
......+.++...-+++.+.....+.++. .|.. . -.++.++.++...|++++|...+.+....-.+. ..
T Consensus 578 f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~ 657 (894)
T COG2909 578 FLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDY 657 (894)
T ss_pred hHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchH
Confidence 33333333333333366666665555544 2322 2 233589999999999999999998887653222 11
Q ss_pred ---HHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003891 237 ---SLNNLGVVYTVQGKMDAAAEMIEKAI 262 (788)
Q Consensus 237 ---~~~~la~~~~~~g~~~eA~~~l~kal 262 (788)
++.-.......+|+.++|.....+..
T Consensus 658 ~a~~~~v~~~lwl~qg~~~~a~~~l~~s~ 686 (894)
T COG2909 658 LAAAYKVKLILWLAQGDKELAAEWLLKSG 686 (894)
T ss_pred HHHHHHhhHHHhcccCCHHHHHHHHHhcc
Confidence 22222233456899999988888743
No 334
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=97.65 E-value=7e-05 Score=80.11 Aligned_cols=110 Identities=20% Similarity=0.225 Sum_probs=100.7
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC
Q 003891 26 VLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNR 105 (788)
Q Consensus 26 ~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~ 105 (788)
.+-..+...+..++|+.|+..|.++++++|+++..+.+.+..+.+.+++..|+.-+.++++.+|....+|+..|.+....
T Consensus 6 e~k~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l 85 (476)
T KOG0376|consen 6 ELKNEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMAL 85 (476)
T ss_pred hhhhHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhH
Confidence 35556777888899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Q 003891 106 GDLESAIACYERCLAVSPNFEIAKNNMAIA 135 (788)
Q Consensus 106 g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 135 (788)
+++.+|...|++...+.|+.+.+...+..+
T Consensus 86 ~~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec 115 (476)
T KOG0376|consen 86 GEFKKALLDLEKVKKLAPNDPDATRKIDEC 115 (476)
T ss_pred HHHHHHHHHHHHhhhcCcCcHHHHHHHHHH
Confidence 999999999999999999998665544433
No 335
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.62 E-value=0.14 Score=54.83 Aligned_cols=49 Identities=16% Similarity=0.144 Sum_probs=30.6
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 003891 245 YTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQ 294 (788)
Q Consensus 245 ~~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~ 294 (788)
++.+|+|.++.-+-.=..++.| .+.++..+|.++...++|++|..++..
T Consensus 472 Lysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~ 520 (549)
T PF07079_consen 472 LYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQK 520 (549)
T ss_pred HHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHh
Confidence 4456666666666555566666 566666666666666666666666554
No 336
>PLN02764 glycosyltransferase family protein
Probab=97.61 E-value=0.0013 Score=73.12 Aligned_cols=156 Identities=10% Similarity=0.011 Sum_probs=95.9
Q ss_pred CCCCeEEEecCCCCcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCH----HHHHHHHHHHHHcCCCCCcEEEcCCcCCcH
Q 003891 523 TNGFITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFCCD----SVRHRFLSTLEQLGLESLRVDLLPLILLNH 598 (788)
Q Consensus 523 ~~~~~~f~~~~~~~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~----~~~~~l~~~~~~~gi~~~rv~~~~~~~~~~ 598 (788)
+.+.|+|.||++...++++-+.-.+.=|...-.--+|++..+.+.+ .+.+.+..+.+..| +++.+++| +.
T Consensus 255 ~~~sVvyvsfGS~~~~~~~q~~ela~gL~~s~~pflwv~r~~~~~~~~~~~lp~~f~~r~~grG-----~v~~~W~P-Q~ 328 (453)
T PLN02764 255 EPDSVVFCALGSQVILEKDQFQELCLGMELTGSPFLVAVKPPRGSSTIQEALPEGFEERVKGRG-----VVWGGWVQ-QP 328 (453)
T ss_pred CCCceEEEeecccccCCHHHHHHHHHHHHhCCCCeEEEEeCCCCCcchhhhCCcchHhhhccCC-----cEEeCCCC-HH
Confidence 4567999999999898887666666666666666888886432111 12233443332222 56668887 56
Q ss_pred HHHHhcccccEeecCCCCCCchhHHHHhhhCCceeecCCCccCccchhHHH-hhhCCcccc------cCCHHHHHHHHHH
Q 003891 599 DHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLL-TKVGLKHLI------AKNEDEYVQLALQ 671 (788)
Q Consensus 599 ~~~~~~~~~Dv~Ld~~~~~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l-~~~gl~~~i------a~~~~~y~~~a~~ 671 (788)
+.+. ...++.|+ ..+|.+|++||+++|||+|+++-- ......+.++ ..+|+.--+ .-+.++..+...+
T Consensus 329 ~vL~-h~~v~~Fv---tH~G~nS~~Eal~~GVP~l~~P~~-~DQ~~na~~l~~~~g~gv~~~~~~~~~~~~e~i~~av~~ 403 (453)
T PLN02764 329 LILS-HPSVGCFV---SHCGFGSMWESLLSDCQIVLVPQL-GDQVLNTRLLSDELKVSVEVAREETGWFSKESLRDAINS 403 (453)
T ss_pred HHhc-CcccCeEE---ecCCchHHHHHHHcCCCEEeCCcc-cchHHHHHHHHHHhceEEEeccccCCccCHHHHHHHHHH
Confidence 6553 35566777 247888999999999999999842 1122333444 234433111 1266777777777
Q ss_pred HhcCH-HHHHHHHHHHHHH
Q 003891 672 LASDV-TALANLRMSLRDL 689 (788)
Q Consensus 672 l~~d~-~~~~~~r~~~~~~ 689 (788)
+..+. +..+++|+++++.
T Consensus 404 vm~~~~~~g~~~r~~a~~~ 422 (453)
T PLN02764 404 VMKRDSEIGNLVKKNHTKW 422 (453)
T ss_pred HhcCCchhHHHHHHHHHHH
Confidence 77665 4556666666543
No 337
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.61 E-value=0.00099 Score=64.91 Aligned_cols=106 Identities=15% Similarity=0.097 Sum_probs=82.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhh--------CCCC----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 003891 203 ACNNLGVIYKDRDNLDKAVECYQMALSI--------KPNF----------SQSLNNLGVVYTVQGKMDAAAEMIEKAIAA 264 (788)
Q Consensus 203 ~~~~la~~~~~~g~~~eA~~~~~~al~~--------~p~~----------~~~~~~la~~~~~~g~~~eA~~~l~kal~~ 264 (788)
++..-|+-+++.|+|++|...|..|+.. .|.. ...+.|++.|+...|+|-++++.....+..
T Consensus 180 ~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~~ 259 (329)
T KOG0545|consen 180 VLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILRH 259 (329)
T ss_pred HHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhc
Confidence 4444555555555555555555555422 3333 336889999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhhHHh
Q 003891 265 NPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQN 308 (788)
Q Consensus 265 ~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~a~~~ 308 (788)
.|.+..+++..|.+....=+..+|..-|.++++++|.-..+...
T Consensus 260 ~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasvVsr 303 (329)
T KOG0545|consen 260 HPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASVVSR 303 (329)
T ss_pred CCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHHHHH
Confidence 99999999999999999999999999999999999986665443
No 338
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=97.60 E-value=0.07 Score=58.21 Aligned_cols=61 Identities=7% Similarity=0.038 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 003891 26 VLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALE 87 (788)
Q Consensus 26 ~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~ 87 (788)
.|+.+-..+..+ .+++..+.|++.+...|..+.+|.......+..++|+.-..+|.+++..
T Consensus 22 sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvk 82 (656)
T KOG1914|consen 22 SWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVK 82 (656)
T ss_pred HHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 355554444443 7777777777777777777777777777777777777777777777654
No 339
>PLN03007 UDP-glucosyltransferase family protein
Probab=97.60 E-value=0.0014 Score=74.13 Aligned_cols=103 Identities=15% Similarity=0.025 Sum_probs=70.4
Q ss_pred CCCeEEEecCCCCcCCHHHHHHHHHHHhHcCCcEEEEecCCCCC-H---HHHHHHHHHHHHcCCCCCcEEEcCCcCCcHH
Q 003891 524 NGFITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFCC-D---SVRHRFLSTLEQLGLESLRVDLLPLILLNHD 599 (788)
Q Consensus 524 ~~~~~f~~~~~~~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~-~---~~~~~l~~~~~~~gi~~~rv~~~~~~~~~~~ 599 (788)
++.++|.||++...+++.-+.-.+.-|...+...||.++.+... + ...+.+.++. .+..+++.+++| +.+
T Consensus 284 ~~svvyvsfGS~~~~~~~~~~~~~~~l~~~~~~flw~~~~~~~~~~~~~~lp~~~~~r~-----~~~g~~v~~w~P-Q~~ 357 (482)
T PLN03007 284 PDSVIYLSFGSVASFKNEQLFEIAAGLEGSGQNFIWVVRKNENQGEKEEWLPEGFEERT-----KGKGLIIRGWAP-QVL 357 (482)
T ss_pred CCceEEEeecCCcCCCHHHHHHHHHHHHHCCCCEEEEEecCCcccchhhcCCHHHHHHh-----ccCCEEEecCCC-HHH
Confidence 45689999999988877777666777888888889988753211 0 1112333322 135778889987 555
Q ss_pred HHHhcccccEeecCCCCCCchhHHHHhhhCCceeecC
Q 003891 600 HMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMA 636 (788)
Q Consensus 600 ~~~~~~~~Dv~Ld~~~~~g~~t~~eal~~GvPvvt~~ 636 (788)
.+.- ..+..|+ ..+|.+|++||+++|||+|+++
T Consensus 358 iL~h-~~v~~fv---tH~G~nS~~Eal~~GVP~v~~P 390 (482)
T PLN03007 358 ILDH-QATGGFV---THCGWNSLLEGVAAGLPMVTWP 390 (482)
T ss_pred Hhcc-Cccceee---ecCcchHHHHHHHcCCCeeecc
Confidence 5543 2234466 2477889999999999999988
No 340
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.60 E-value=0.0014 Score=68.52 Aligned_cols=129 Identities=10% Similarity=0.021 Sum_probs=106.7
Q ss_pred hhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHH
Q 003891 141 TKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGE-MLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDK 219 (788)
Q Consensus 141 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~e 219 (788)
+...+.+..+.|...|.++.+..+....+|...|.+.+. .++.+.|.++|+.+++..|.+...|......+...++.+.
T Consensus 9 ~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~~~d~~~ 88 (280)
T PF05843_consen 9 RFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIKLNDINN 88 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-HHH
T ss_pred HHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhCcHHH
Confidence 334444568999999999997666678899999999777 5666669999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 003891 220 AVECYQMALSIKPNFS---QSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYA 269 (788)
Q Consensus 220 A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~ 269 (788)
|..+|++++..-+... .+|......-.+.|+.+...+..+++.+..|+..
T Consensus 89 aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~ 141 (280)
T PF05843_consen 89 ARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDN 141 (280)
T ss_dssp HHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-
T ss_pred HHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhh
Confidence 9999999998866654 5888888888899999999999999999988743
No 341
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=97.60 E-value=0.023 Score=63.91 Aligned_cols=151 Identities=16% Similarity=0.073 Sum_probs=92.5
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHH-H------HHHHHHHHH----HcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Q 003891 146 EGDINQGVAYYKKALYYNWHYAD-A------MYNLGVAYG----EMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDR 214 (788)
Q Consensus 146 ~g~~~~A~~~~~~al~~~p~~~~-~------~~~la~~~~----~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 214 (788)
.|+-+.+++.+.++.+...-... + |+.....+. .....+.|.+.++...+..|+..-.++..|.++...
T Consensus 201 ~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~ 280 (468)
T PF10300_consen 201 SGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPNSALFLFFEGRLERLK 280 (468)
T ss_pred CCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHh
Confidence 46777777777777652211111 1 111111111 234566777777777777777777777777777777
Q ss_pred CCHHHHHHHHHHHHhhCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCCH----
Q 003891 215 DNLDKAVECYQMALSIKPNFS----QSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTY-AEAYNNLGVLYRDAGSI---- 285 (788)
Q Consensus 215 g~~~eA~~~~~~al~~~p~~~----~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~-~~~~~~la~~~~~~g~~---- 285 (788)
|+.++|++.|++++....... -.++.+++++..+.+|++|.+++.+..+.+.-. .-..+..|.++...|+.
T Consensus 281 g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~ 360 (468)
T PF10300_consen 281 GNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAAACLLMLGREEEAK 360 (468)
T ss_pred cCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccchhhh
Confidence 777777777777764332222 256677777777777777777777777765443 33445566777777777
Q ss_pred ---HHHHHHHHHHH
Q 003891 286 ---SLAIDAYEQCL 296 (788)
Q Consensus 286 ---~eA~~~~~~al 296 (788)
++|.++|+++-
T Consensus 361 ~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 361 EHKKEAEELFRKVP 374 (468)
T ss_pred hhHHHHHHHHHHHH
Confidence 55555555543
No 342
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.60 E-value=0.0012 Score=64.38 Aligned_cols=104 Identities=20% Similarity=0.201 Sum_probs=92.6
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHh--------CCCC----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003891 25 IVLTDLGTSLKLAGNTQDGIQKYYEALKI--------DPHY----------APAYYNLGVVYSELMQYDTALGCYEKAAL 86 (788)
Q Consensus 25 ~~l~~lg~~~~~~g~~~~A~~~~~~al~~--------~p~~----------~~~~~~lg~~~~~~g~~~~A~~~~~kal~ 86 (788)
.++...|+-++..|+|.+|...|+.|+.. .|.. ...+.+.+.|+...|+|-++++.....+.
T Consensus 179 ~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~ 258 (329)
T KOG0545|consen 179 PVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILR 258 (329)
T ss_pred HHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHh
Confidence 45778899999999999999999998753 3443 44678999999999999999999999999
Q ss_pred hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHH
Q 003891 87 ERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIA 128 (788)
Q Consensus 87 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 128 (788)
..|.+..+|+..|.+....=+..+|..-|.++++++|.....
T Consensus 259 ~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasv 300 (329)
T KOG0545|consen 259 HHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASV 300 (329)
T ss_pred cCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHH
Confidence 999999999999999999999999999999999999986543
No 343
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=97.57 E-value=0.18 Score=56.05 Aligned_cols=280 Identities=11% Similarity=0.024 Sum_probs=161.7
Q ss_pred HHHHHHHHcCCCChhhHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHH-HHcCCHHHHHHHHH
Q 003891 4 ASYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVY-SELMQYDTALGCYE 82 (788)
Q Consensus 4 ~~~~kaL~~~P~~~~a~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~-~~~g~~~~A~~~~~ 82 (788)
..|...|...|--... |...+...++.|..+++.+.|++++.--|-....|...-... ...|+.+.-...|+
T Consensus 66 ~~y~~fL~kyPl~~gy-------W~kfA~~E~klg~~~~s~~Vfergv~aip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe 138 (577)
T KOG1258|consen 66 EVYDIFLSKYPLCYGY-------WKKFADYEYKLGNAENSVKVFERGVQAIPLSVDLWLSYLAFLKNNNGDPETLRDLFE 138 (577)
T ss_pred HHHHHHHhhCccHHHH-------HHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccCCCHHHHHHHHH
Confidence 4555666666654444 444556667778899999999999998888777776554333 34567777777888
Q ss_pred HHHHhCCCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHH----HH-----------HHHHHh----h
Q 003891 83 KAALERPMY---AEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNN----MA-----------IALTDL----G 140 (788)
Q Consensus 83 kal~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~----la-----------~~l~~l----g 140 (788)
+|......+ ...|-.+-..-..++++..-...|++.++.--..-..++. .. ..+..+ .
T Consensus 139 ~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP~~~~~~~f~~f~~~l~~~~~~~l~~~d~~~~l~~~~~ 218 (577)
T KOG1258|consen 139 RAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIPLHQLNRHFDRFKQLLNQNEEKILLSIDELIQLRSDVA 218 (577)
T ss_pred HHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhcCChhhhcCHHHHHHHhhhHH
Confidence 887754432 2334334444455556666666666655441110000000 00 000000 0
Q ss_pred --------------------hhhhhcCCHHHHHHHHHHHHHh-----------------------------CCC---CHH
Q 003891 141 --------------------TKVKLEGDINQGVAYYKKALYY-----------------------------NWH---YAD 168 (788)
Q Consensus 141 --------------------~~~~~~g~~~~A~~~~~~al~~-----------------------------~p~---~~~ 168 (788)
.+-...+.++++...+.+...+ .|. ...
T Consensus 219 ~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~ 298 (577)
T KOG1258|consen 219 ERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEEEEEKRWGFEEGIKRPYFHVKPLDQAQLK 298 (577)
T ss_pred hhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhhhhccccccccCcccHHHHH
Confidence 0000112223333222222211 111 122
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHH
Q 003891 169 AMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIK-PNFSQSLNNLGVVYTV 247 (788)
Q Consensus 169 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~la~~~~~ 247 (788)
.|......-...|+++...-.|++++--.....+.|...+......|+.+-|...+..+.++. +..+.+...-+..-..
T Consensus 299 nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~ 378 (577)
T KOG1258|consen 299 NWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFEES 378 (577)
T ss_pred HHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHh
Confidence 344555555667777777777777776666667777777777777777777777777776653 4556666666666667
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 003891 248 QGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAID 290 (788)
Q Consensus 248 ~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~~eA~~ 290 (788)
.|++..|..++++..+..|+...+-.........+|+.+.+..
T Consensus 379 ~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~~ 421 (577)
T KOG1258|consen 379 NGNFDDAKVILQRIESEYPGLVEVVLRKINWERRKGNLEDANY 421 (577)
T ss_pred hccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHhcchhhhhH
Confidence 7777777777777777667776666666666777777776663
No 344
>PLN02210 UDP-glucosyl transferase
Probab=97.57 E-value=0.0014 Score=73.44 Aligned_cols=139 Identities=13% Similarity=0.090 Sum_probs=89.5
Q ss_pred CCCeEEEecCCCCcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHHHHh
Q 003891 524 NGFITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQA 603 (788)
Q Consensus 524 ~~~~~f~~~~~~~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~~~~l~~~~~~~gi~~~rv~~~~~~~~~~~~~~~ 603 (788)
+..|+|.||++..+..++.++..+.-|...+...||.++..... .....+.++.. .+|..+.+++| +.+.+.-
T Consensus 268 ~~svvyvsfGS~~~~~~~~~~e~a~~l~~~~~~flw~~~~~~~~-~~~~~~~~~~~-----~~~g~v~~w~P-Q~~iL~h 340 (456)
T PLN02210 268 RSSVVYISFGSMLESLENQVETIAKALKNRGVPFLWVIRPKEKA-QNVQVLQEMVK-----EGQGVVLEWSP-QEKILSH 340 (456)
T ss_pred CCceEEEEecccccCCHHHHHHHHHHHHhCCCCEEEEEeCCccc-cchhhHHhhcc-----CCCeEEEecCC-HHHHhcC
Confidence 45689999999999999999999999999999888887643211 11122222211 25556678887 5655543
Q ss_pred cccccEeecCCCCCCchhHHHHhhhCCceeecCC--CccCccchhHHHhh-hCCccccc-------CCHHHHHHHHHHHh
Q 003891 604 YSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAG--SVHAHNVGVSLLTK-VGLKHLIA-------KNEDEYVQLALQLA 673 (788)
Q Consensus 604 ~~~~Dv~Ld~~~~~g~~t~~eal~~GvPvvt~~g--~~~~~r~~~~~l~~-~gl~~~ia-------~~~~~y~~~a~~l~ 673 (788)
..+..|| ..+|.+|++||+++|||+|+++- +.+ ..+.++.. +|+.-.+. -+.++..+...++.
T Consensus 341 -~~vg~Fi---tH~G~nS~~Eai~~GVP~v~~P~~~DQ~---~na~~~~~~~g~G~~l~~~~~~~~~~~~~l~~av~~~m 413 (456)
T PLN02210 341 -MAISCFV---THCGWNSTIETVVAGVPVVAYPSWTDQP---IDARLLVDVFGIGVRMRNDAVDGELKVEEVERCIEAVT 413 (456)
T ss_pred -cCcCeEE---eeCCcccHHHHHHcCCCEEecccccccH---HHHHHHHHHhCeEEEEeccccCCcCCHHHHHHHHHHHh
Confidence 3345776 23777899999999999999984 322 33444433 44432221 25566666666666
Q ss_pred cCH
Q 003891 674 SDV 676 (788)
Q Consensus 674 ~d~ 676 (788)
.++
T Consensus 414 ~~~ 416 (456)
T PLN02210 414 EGP 416 (456)
T ss_pred cCc
Confidence 554
No 345
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics.
Probab=97.56 E-value=0.0028 Score=70.43 Aligned_cols=141 Identities=9% Similarity=0.020 Sum_probs=90.4
Q ss_pred CCCeEEEecCCCCc-CCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHHHH
Q 003891 524 NGFITFGSFNNLAK-ITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQ 602 (788)
Q Consensus 524 ~~~~~f~~~~~~~K-~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~~~~l~~~~~~~gi~~~rv~~~~~~~~~~~~~~ 602 (788)
+..++|.++++... ....+.+...+.+...+.-.++..|..... . ..+ +++|.+.++++ ..++
T Consensus 238 ~~~~v~v~~Gs~~~~~~~~~~~~~~~a~~~~~~~~i~~~g~~~~~----~--------~~~-~~~v~~~~~~p-~~~l-- 301 (401)
T cd03784 238 GRPPVYVGFGSMVVRDPEALARLDVEAVATLGQRAILSLGWGGLG----A--------EDL-PDNVRVVDFVP-HDWL-- 301 (401)
T ss_pred CCCcEEEeCCCCcccCHHHHHHHHHHHHHHcCCeEEEEccCcccc----c--------cCC-CCceEEeCCCC-HHHH--
Confidence 45677778877643 445677777777777655555555543111 0 123 47899999876 4444
Q ss_pred hcccccEeecCCCCCCchhHHHHhhhCCceeecCCCccCccchhHHHhhhCCcccccC---CHHHHHHHHHHHhcCHHHH
Q 003891 603 AYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIAK---NEDEYVQLALQLASDVTAL 679 (788)
Q Consensus 603 ~~~~~Dv~Ld~~~~~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l~~~gl~~~ia~---~~~~y~~~a~~l~~d~~~~ 679 (788)
+..||+++ ..+|..|+.|||++|||+|.++-.. -.-..+..+...|..-.+.. +.++..+...++.+++ .+
T Consensus 302 -l~~~d~~I---~hgG~~t~~eal~~GvP~v~~P~~~-dQ~~~a~~~~~~G~g~~l~~~~~~~~~l~~al~~~l~~~-~~ 375 (401)
T cd03784 302 -LPRCAAVV---HHGGAGTTAAALRAGVPQLVVPFFG-DQPFWAARVAELGAGPALDPRELTAERLAAALRRLLDPP-SR 375 (401)
T ss_pred -hhhhheee---ecCCchhHHHHHHcCCCEEeeCCCC-CcHHHHHHHHHCCCCCCCCcccCCHHHHHHHHHHHhCHH-HH
Confidence 45599999 3477789999999999999987432 13334556677776654433 6777777777777754 44
Q ss_pred HHHHHHH
Q 003891 680 ANLRMSL 686 (788)
Q Consensus 680 ~~~r~~~ 686 (788)
++.++..
T Consensus 376 ~~~~~~~ 382 (401)
T cd03784 376 RRAAALL 382 (401)
T ss_pred HHHHHHH
Confidence 4444433
No 346
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.54 E-value=0.0095 Score=58.96 Aligned_cols=232 Identities=14% Similarity=0.120 Sum_probs=131.3
Q ss_pred HcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHH-HHHH
Q 003891 36 LAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELM-QYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLE-SAIA 113 (788)
Q Consensus 36 ~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g-~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g~~~-~A~~ 113 (788)
+...-..|+++-..++.++|.+..+|...-.++..++ +..+-++++.+.++.+|++.++|...-.+....|+.. .-++
T Consensus 55 ~~E~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rELe 134 (318)
T KOG0530|consen 55 KNEKSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFRELE 134 (318)
T ss_pred ccccCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccchHH
Confidence 3345566777777777777777666666555554433 4566666777777777777777777666666666666 6666
Q ss_pred HHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cC-----ChHHHH
Q 003891 114 CYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGE-ML-----KFDMAI 187 (788)
Q Consensus 114 ~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~g-----~~~~A~ 187 (788)
..++++..+.++-.+|.....++...+ .++.-+.+..+.++.+-.+-.+|...-.+... .| ..+.-+
T Consensus 135 f~~~~l~~DaKNYHaWshRqW~~r~F~-------~~~~EL~y~~~Lle~Di~NNSAWN~Ryfvi~~~~~~~~~~~le~El 207 (318)
T KOG0530|consen 135 FTKLMLDDDAKNYHAWSHRQWVLRFFK-------DYEDELAYADELLEEDIRNNSAWNQRYFVITNTKGVISKAELEREL 207 (318)
T ss_pred HHHHHHhccccchhhhHHHHHHHHHHh-------hHHHHHHHHHHHHHHhhhccchhheeeEEEEeccCCccHHHHHHHH
Confidence 677777766666666666665555543 56666677777776665555554432222111 11 223345
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHH-cC--CHHHHHHHHHHHH-hhCCCCHHHHHHHHHHHHH------cCCHH---HH
Q 003891 188 VFYELAFHFNPHCAEACNNLGVIYKD-RD--NLDKAVECYQMAL-SIKPNFSQSLNNLGVVYTV------QGKMD---AA 254 (788)
Q Consensus 188 ~~~~~al~~~p~~~~~~~~la~~~~~-~g--~~~eA~~~~~~al-~~~p~~~~~~~~la~~~~~------~g~~~---eA 254 (788)
.+..+.+...|++..+|+.|.-++.. .| .+.+-.......+ +.....+..+..+..+|.. .+.-+ +|
T Consensus 208 ~yt~~~I~~vP~NeSaWnYL~G~l~~d~gl~s~s~vv~f~~~l~~~~~~~sP~lla~l~d~~~e~~l~~~~~~~~~a~~a 287 (318)
T KOG0530|consen 208 NYTKDKILLVPNNESAWNYLKGLLELDSGLSSDSKVVSFVENLYLQLPKRSPFLLAFLLDLYAEDALAYKSSAEELARKA 287 (318)
T ss_pred HHHHHHHHhCCCCccHHHHHHHHHHhccCCcCCchHHHHHHHHhhccCCCChhHHHHHHHHHHHHHhhccccchHHHHHH
Confidence 55666666777777777776666654 33 2333333333333 3333445555445444421 12222 46
Q ss_pred HHHHHHHH-HhCCCCHHHHHH
Q 003891 255 AEMIEKAI-AANPTYAEAYNN 274 (788)
Q Consensus 255 ~~~l~kal-~~~p~~~~~~~~ 274 (788)
.+.|+..- +.+|-....|..
T Consensus 288 ~~ly~~La~~~DpiR~nyW~~ 308 (318)
T KOG0530|consen 288 VKLYEDLAIKVDPIRKNYWRH 308 (318)
T ss_pred HHHHHHHhhccCcHHHHHHHH
Confidence 66666554 556655554443
No 347
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.54 E-value=0.00019 Score=51.73 Aligned_cols=39 Identities=28% Similarity=0.452 Sum_probs=17.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 003891 238 LNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLG 276 (788)
Q Consensus 238 ~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~la 276 (788)
+..+|.+|..+|++++|++.|+++++.+|+++.++..+|
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La 42 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALA 42 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhh
Confidence 344444444444444444444444444444444444443
No 348
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=97.53 E-value=0.057 Score=56.54 Aligned_cols=122 Identities=20% Similarity=0.074 Sum_probs=92.4
Q ss_pred HHHHHHHHHHcC-CCChhhHHHHHHHHHHHHHHHHHcC-ChHHHHHHHHHHHHh----CCC----------CHHHHHHHH
Q 003891 2 LVASYHKALSAD-PSYKPAAECLAIVLTDLGTSLKLAG-NTQDGIQKYYEALKI----DPH----------YAPAYYNLG 65 (788)
Q Consensus 2 Ai~~~~kaL~~~-P~~~~a~~~la~~l~~lg~~~~~~g-~~~~A~~~~~~al~~----~p~----------~~~~~~~lg 65 (788)
|..++.|+=... ..++.....++.++++.|...+..+ ++++|..+++++.+. .+. ...++..++
T Consensus 12 A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL~~La 91 (278)
T PF08631_consen 12 AEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSILRLLA 91 (278)
T ss_pred HHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHHHHHH
Confidence 566677776655 5566677789999999999999999 999999999999887 211 144677888
Q ss_pred HHHHHcCCHH---HHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCC
Q 003891 66 VVYSELMQYD---TALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSP 123 (788)
Q Consensus 66 ~~~~~~g~~~---~A~~~~~kal~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 123 (788)
.+|...+.++ +|....+.+-...|+.+..+...-.+..+.++.+++.+.+.+++...+
T Consensus 92 ~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~ 152 (278)
T PF08631_consen 92 NAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVD 152 (278)
T ss_pred HHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcc
Confidence 8888877654 455556666666788777776666666668889999999998887644
No 349
>COG0297 GlgA Glycogen synthase [Carbohydrate transport and metabolism]
Probab=97.53 E-value=0.0028 Score=70.49 Aligned_cols=165 Identities=17% Similarity=0.082 Sum_probs=116.8
Q ss_pred CCeEEEecCCC--CcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHHHH
Q 003891 525 GFITFGSFNNL--AKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQ 602 (788)
Q Consensus 525 ~~~~f~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~~~~l~~~~~~~gi~~~rv~~~~~~~~~~~~~~ 602 (788)
..+.||.++|+ .|.-+-++++...++... .+|+++|.| +......++...+.+- +++.+.-... ..-...
T Consensus 293 ~~pl~~~vsRl~~QKG~dl~~~~i~~~l~~~--~~~vilG~g--d~~le~~~~~la~~~~---~~~~~~i~~~-~~la~~ 364 (487)
T COG0297 293 PGPLFGFVSRLTAQKGLDLLLEAIDELLEQG--WQLVLLGTG--DPELEEALRALASRHP---GRVLVVIGYD-EPLAHL 364 (487)
T ss_pred CCcEEEEeeccccccchhHHHHHHHHHHHhC--ceEEEEecC--cHHHHHHHHHHHHhcC---ceEEEEeeec-HHHHHH
Confidence 45789999988 999999999999999876 899999987 5567777777777663 3554443332 344456
Q ss_pred hcccccEeecCCCC-CCchhHHHHhhhCCceeecCCCccCccchhHHHhhhCCccccc------------------CCHH
Q 003891 603 AYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIA------------------KNED 663 (788)
Q Consensus 603 ~~~~~Dv~Ld~~~~-~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l~~~gl~~~ia------------------~~~~ 663 (788)
.|..+|++|=|+-| ..|.|-++||..|++.|. .++| ||.+.|. .+++
T Consensus 365 i~agaD~~lmPSrfEPcGL~ql~amryGtvpIv-------~~tG-------GLadTV~~~~~~~~~~~gtGf~f~~~~~~ 430 (487)
T COG0297 365 IYAGADVILMPSRFEPCGLTQLYAMRYGTLPIV-------RETG-------GLADTVVDRNEWLIQGVGTGFLFLQTNPD 430 (487)
T ss_pred HHhcCCEEEeCCcCcCCcHHHHHHHHcCCcceE-------cccC-------CccceecCccchhccCceeEEEEecCCHH
Confidence 78999999999998 779999999999965553 3444 5544443 2444
Q ss_pred HH---HHHHHHHhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHH
Q 003891 664 EY---VQLALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRNMWHR 715 (788)
Q Consensus 664 ~y---~~~a~~l~~d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~ 715 (788)
++ +.+|+.+..+++.. +|.-.+..|. ..|+++.-+....+.|+.+...
T Consensus 431 ~l~~al~rA~~~y~~~~~~--w~~~~~~~m~--~d~sw~~sa~~y~~lY~~~~~~ 481 (487)
T COG0297 431 HLANALRRALVLYRAPPLL--WRKVQPNAMG--ADFSWDLSAKEYVELYKPLLSK 481 (487)
T ss_pred HHHHHHHHHHHHhhCCHHH--HHHHHHhhcc--cccCchhHHHHHHHHHHHHhcc
Confidence 44 34566666666542 3333334443 5588999999999999987653
No 350
>PLN02167 UDP-glycosyltransferase family protein
Probab=97.52 E-value=0.002 Score=72.74 Aligned_cols=103 Identities=17% Similarity=0.130 Sum_probs=72.6
Q ss_pred CCCeEEEecCCCCcCCHHHHHHHHHHHhHcCCcEEEEecCCCCC-----HHHHHHHHHHHHHcCCCCCcEEEcCCcCCcH
Q 003891 524 NGFITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFCC-----DSVRHRFLSTLEQLGLESLRVDLLPLILLNH 598 (788)
Q Consensus 524 ~~~~~f~~~~~~~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~-----~~~~~~l~~~~~~~gi~~~rv~~~~~~~~~~ 598 (788)
.+.|+|.||++...+.++.++-.+.-|...+..-||.++.+... ....+.+.++. . +|..+.+++| +.
T Consensus 279 ~~svvyvsfGS~~~~~~~~~~ela~~l~~~~~~flw~~~~~~~~~~~~~~~lp~~~~er~-----~-~rg~v~~w~P-Q~ 351 (475)
T PLN02167 279 ESSVVFLCFGSLGSLPAPQIKEIAQALELVGCRFLWSIRTNPAEYASPYEPLPEGFMDRV-----M-GRGLVCGWAP-QV 351 (475)
T ss_pred CCceEEEeecccccCCHHHHHHHHHHHHhCCCcEEEEEecCcccccchhhhCChHHHHHh-----c-cCeeeeccCC-HH
Confidence 35688999999888899889888999999999888887643111 01122333332 1 4566678887 55
Q ss_pred HHHHhcccccEeecCCCCCCchhHHHHhhhCCceeecCC
Q 003891 599 DHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAG 637 (788)
Q Consensus 599 ~~~~~~~~~Dv~Ld~~~~~g~~t~~eal~~GvPvvt~~g 637 (788)
+.+ ....++.|| ..+|.+|++||+++|||+|+++-
T Consensus 352 ~iL-~h~~vg~fv---tH~G~nS~~Eal~~GvP~l~~P~ 386 (475)
T PLN02167 352 EIL-AHKAIGGFV---SHCGWNSVLESLWFGVPIATWPM 386 (475)
T ss_pred HHh-cCcccCeEE---eeCCcccHHHHHHcCCCEEeccc
Confidence 555 334466776 24778899999999999999883
No 351
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.51 E-value=0.018 Score=57.08 Aligned_cols=247 Identities=15% Similarity=0.146 Sum_probs=179.9
Q ss_pred CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC-CHHHHHHHHH
Q 003891 38 GNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRG-DLESAIACYE 116 (788)
Q Consensus 38 g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~ 116 (788)
.+|.++..+|+..+..+.. -..|+++-+.++.++|.+..+|...-.++..++ +..+-++++.
T Consensus 40 e~fr~~m~YfRAI~~~~E~-----------------S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~ 102 (318)
T KOG0530|consen 40 EDFRDVMDYFRAIIAKNEK-----------------SPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLD 102 (318)
T ss_pred hhHHHHHHHHHHHHhcccc-----------------CHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 4567777777776655543 466778888899999999999988887777664 6788899999
Q ss_pred HHHhhCCCcHHHHHHHHHHHHHhhhhhhhcCCHH-HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 003891 117 RCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDIN-QGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFH 195 (788)
Q Consensus 117 ~al~~~p~~~~~~~~la~~l~~lg~~~~~~g~~~-~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 195 (788)
+.++-+|++-..|...-.+...++ +.. .-++..+.++..+.++..+|...-.+...-+.++.-+.+..+.++
T Consensus 103 eI~e~npKNYQvWHHRr~ive~l~-------d~s~rELef~~~~l~~DaKNYHaWshRqW~~r~F~~~~~EL~y~~~Lle 175 (318)
T KOG0530|consen 103 EIIEDNPKNYQVWHHRRVIVELLG-------DPSFRELEFTKLMLDDDAKNYHAWSHRQWVLRFFKDYEDELAYADELLE 175 (318)
T ss_pred HHHHhCccchhHHHHHHHHHHHhc-------CcccchHHHHHHHHhccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 999999999999888777766655 555 678889999999999999999999999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHHHH-cC-----CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH-cC--CHHHHHHHHHHHH-HhC
Q 003891 196 FNPHCAEACNNLGVIYKD-RD-----NLDKAVECYQMALSIKPNFSQSLNNLGVVYTV-QG--KMDAAAEMIEKAI-AAN 265 (788)
Q Consensus 196 ~~p~~~~~~~~la~~~~~-~g-----~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~-~g--~~~eA~~~l~kal-~~~ 265 (788)
.+-.+-.+|+..-.+... .| ..+.-+.+..+.+...|++..+|..|.-++.. .| .+.+-.......+ ...
T Consensus 176 ~Di~NNSAWN~Ryfvi~~~~~~~~~~~le~El~yt~~~I~~vP~NeSaWnYL~G~l~~d~gl~s~s~vv~f~~~l~~~~~ 255 (318)
T KOG0530|consen 176 EDIRNNSAWNQRYFVITNTKGVISKAELERELNYTKDKILLVPNNESAWNYLKGLLELDSGLSSDSKVVSFVENLYLQLP 255 (318)
T ss_pred HhhhccchhheeeEEEEeccCCccHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhccCCcCCchHHHHHHHHhhccC
Confidence 877666666543222222 11 24556778889999999999999999888876 44 2344445555544 334
Q ss_pred CCCHHHHHHHHHHHH------HcCCHH---HHHHHHHHHH-hhCCCChhhHHh
Q 003891 266 PTYAEAYNNLGVLYR------DAGSIS---LAIDAYEQCL-KIDPDSRNAGQN 308 (788)
Q Consensus 266 p~~~~~~~~la~~~~------~~g~~~---eA~~~~~~al-~l~p~~~~a~~~ 308 (788)
...+..+-.+..+|. +.+.-+ +|.+.|+..- +.+|=..+.+..
T Consensus 256 ~~sP~lla~l~d~~~e~~l~~~~~~~~~a~~a~~ly~~La~~~DpiR~nyW~~ 308 (318)
T KOG0530|consen 256 KRSPFLLAFLLDLYAEDALAYKSSAEELARKAVKLYEDLAIKVDPIRKNYWRH 308 (318)
T ss_pred CCChhHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhhccCcHHHHHHHH
Confidence 455666666666662 223334 5777777654 777765555443
No 352
>PLN02554 UDP-glycosyltransferase family protein
Probab=97.49 E-value=0.0046 Score=69.94 Aligned_cols=103 Identities=14% Similarity=0.072 Sum_probs=73.9
Q ss_pred CCCeEEEecCCCCcCCHHHHHHHHHHHhHcCCcEEEEecCCCC-----------C-HH-HHHHHHHHHHHcCCCCCcEEE
Q 003891 524 NGFITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFC-----------C-DS-VRHRFLSTLEQLGLESLRVDL 590 (788)
Q Consensus 524 ~~~~~f~~~~~~~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~-----------~-~~-~~~~l~~~~~~~gi~~~rv~~ 590 (788)
.+.|+|.||++...++++.++..+.-|...+.-.||.+..+.. + .. ....+.++. .+|+.+
T Consensus 273 ~~svvyvsfGS~~~~~~~~~~~la~~l~~~~~~flW~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~r~------~~~g~v 346 (481)
T PLN02554 273 PKSVVFLCFGSMGGFSEEQAREIAIALERSGHRFLWSLRRASPNIMKEPPGEFTNLEEILPEGFLDRT------KDIGKV 346 (481)
T ss_pred CCcEEEEeccccccCCHHHHHHHHHHHHHcCCCeEEEEcCCcccccccccccccchhhhCChHHHHHh------ccCceE
Confidence 3458899999999999999999999999999988888754210 0 00 112333222 267777
Q ss_pred cCCcCCcHHHHHhcccccEeecCCCCCCchhHHHHhhhCCceeecCC
Q 003891 591 LPLILLNHDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAG 637 (788)
Q Consensus 591 ~~~~~~~~~~~~~~~~~Dv~Ld~~~~~g~~t~~eal~~GvPvvt~~g 637 (788)
.+++| +.+.+. ...++.|+ ..+|-+|++||+++|||+|+++-
T Consensus 347 ~~W~P-Q~~iL~-H~~v~~Fv---tH~G~nS~~Ea~~~GVP~l~~P~ 388 (481)
T PLN02554 347 IGWAP-QVAVLA-KPAIGGFV---THCGWNSILESLWFGVPMAAWPL 388 (481)
T ss_pred EeeCC-HHHHhC-CcccCccc---ccCccchHHHHHHcCCCEEecCc
Confidence 89987 566553 35566676 24778899999999999999983
No 353
>PF00201 UDPGT: UDP-glucoronosyl and UDP-glucosyl transferase; InterPro: IPR002213 UDP glycosyltransferases (UGT) are a superfamily of enzymes that catalyzes the addition of the glycosyl group from a UTP-sugar to a small hydrophobic molecule. This family currently consist of: Mammalian UDP-glucuronosyl transferases (2.4.1.17 from EC) (UDPGT) []. A large family of membrane-bound microsomal enzymes which catalyze the transfer of glucuronic acid to a wide variety of exogenous and endogenous lipophilic substrates. These enzymes are of major importance in the detoxification and subsequent elimination of xenobiotics such as drugs and carcinogens. A large number of putative UDPGT from Caenorhabditis elegans. Mammalian 2-hydroxyacylsphingosine 1-beta-galactosyltransferase [] (2.4.1.45 from EC) (also known as UDP-galactose-ceramide galactosyltransferase). This enzyme catalyzes the transfer of galactose to ceramide, a key enzymatic step in the biosynthesis of galactocerebrosides, which are abundant sphingolipids of the myelin membrane of the central nervous system and peripheral nervous system. Plants flavonol O(3)-glucosyltransferase (2.4.1.91 from EC). An enzyme [] that catalyzes the transfer of glucose from UDP-glucose to a flavanol. This reaction is essential and one of the last steps in anthocyanin pigment biosynthesis. Baculoviruses ecdysteroid UDP-glucosyltransferase (2.4.1 from EC) [] (egt). This enzyme catalyzes the transfer of glucose from UDP-glucose to ectysteroids which are insect molting hormones. The expression of egt in the insect host interferes with the normal insect development by blocking the molting process. Prokaryotic zeaxanthin glucosyltransferase (2.4.1 from EC) (gene crtX), an enzyme involved in carotenoid biosynthesis and that catalyses the glycosylation reaction which converts zeaxanthin to zeaxanthin-beta-diglucoside. Streptomyces macrolide glycosyltransferases (2.4.1 from EC) []. These enzymes specifically inactivates macrolide anitibiotics via 2'-O-glycosylation using UDP-glucose. These enzymes share a conserved domain of about 50 amino acid residues located in their C-terminal section.; GO: 0016758 transferase activity, transferring hexosyl groups, 0008152 metabolic process; PDB: 3HBJ_A 3HBF_A 2PQ6_A 3IA7_B 3RSC_A 3IAA_B 2IYA_A 2IYF_B 2O6L_A 2VCH_A ....
Probab=97.49 E-value=0.00054 Score=78.57 Aligned_cols=162 Identities=16% Similarity=0.214 Sum_probs=90.1
Q ss_pred CCCeEEEecCCCCcCCHH-HHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHHHH
Q 003891 524 NGFITFGSFNNLAKITPK-VLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQ 602 (788)
Q Consensus 524 ~~~~~f~~~~~~~K~~~~-~~~~~~~il~~~p~~~l~l~~~~~~~~~~~~~l~~~~~~~gi~~~rv~~~~~~~~~~~~~~ 602 (788)
...++|-||++..+..|+ ..+..++.+++.|...||-..+. .... + ++.+.+..++| +.+.++
T Consensus 275 ~~~vv~vsfGs~~~~~~~~~~~~~~~~~~~~~~~~iW~~~~~-----~~~~---------l-~~n~~~~~W~P-Q~~lL~ 338 (500)
T PF00201_consen 275 KKGVVYVSFGSIVSSMPEEKLKEIAEAFENLPQRFIWKYEGE-----PPEN---------L-PKNVLIVKWLP-QNDLLA 338 (500)
T ss_dssp TTEEEEEE-TSSSTT-HHHHHHHHHHHHHCSTTEEEEEETCS-----HGCH---------H-HTTEEEESS---HHHHHT
T ss_pred CCCEEEEecCcccchhHHHHHHHHHHHHhhCCCccccccccc-----cccc---------c-cceEEEecccc-chhhhh
Confidence 456889999988665554 48889999999999666655431 1111 1 25678889998 677765
Q ss_pred hcccccEeecCCCCCCchhHHHHhhhCCceeecC--CCccCccchhHHHhhhCCccccc---CCHHHHHHHHHHHhcCHH
Q 003891 603 AYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMA--GSVHAHNVGVSLLTKVGLKHLIA---KNEDEYVQLALQLASDVT 677 (788)
Q Consensus 603 ~~~~~Dv~Ld~~~~~g~~t~~eal~~GvPvvt~~--g~~~~~r~~~~~l~~~gl~~~ia---~~~~~y~~~a~~l~~d~~ 677 (788)
...+++|+ ..+|.+|+.||+++|||+|+++ |+.+ ..+..+...|....+- -+.++..+...++.+|+.
T Consensus 339 -hp~v~~fi---tHgG~~s~~Ea~~~gvP~l~~P~~~DQ~---~na~~~~~~G~g~~l~~~~~~~~~l~~ai~~vl~~~~ 411 (500)
T PF00201_consen 339 -HPRVKLFI---THGGLNSTQEALYHGVPMLGIPLFGDQP---RNAARVEEKGVGVVLDKNDLTEEELRAAIREVLENPS 411 (500)
T ss_dssp -STTEEEEE---ES--HHHHHHHHHCT--EEE-GCSTTHH---HHHHHHHHTTSEEEEGGGC-SHHHHHHHHHHHHHSHH
T ss_pred -cccceeee---eccccchhhhhhhccCCccCCCCcccCC---ccceEEEEEeeEEEEEecCCcHHHHHHHHHHHHhhhH
Confidence 45577787 1377779999999999999988 4432 2345566667654332 267888888889999987
Q ss_pred HHHHHHHHHHHHhhcCCCCChHHHHHHHHHHH
Q 003891 678 ALANLRMSLRDLMSKSPVCDGQNFALGLESTY 709 (788)
Q Consensus 678 ~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~ 709 (788)
.++..++ ++..+...|.--.++.+..+|-+.
T Consensus 412 y~~~a~~-ls~~~~~~p~~p~~~~~~~ie~v~ 442 (500)
T PF00201_consen 412 YKENAKR-LSSLFRDRPISPLERAVWWIEYVA 442 (500)
T ss_dssp HHHHHHH-HHHTTT------------------
T ss_pred HHHHHHH-HHHHHhcCCCCHHHHHHHHHHHHH
Confidence 5555433 333444334333344445555443
No 354
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.48 E-value=0.00027 Score=50.88 Aligned_cols=40 Identities=28% Similarity=0.265 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 003891 60 AYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMG 99 (788)
Q Consensus 60 ~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~la 99 (788)
+++.+|..|...|++++|++.|+++++.+|+++.++..+|
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La 42 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALA 42 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhh
Confidence 4445555555555555555555555555555555554444
No 355
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=97.47 E-value=0.011 Score=65.78 Aligned_cols=174 Identities=12% Similarity=0.115 Sum_probs=84.5
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHH------HHHh----CCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 003891 25 IVLTDLGTSLKLAGNTQDGIQKYYE------ALKI----DPHYA-PAYYNLGVVYSELMQYDTALGCYEKAALERPMYAE 93 (788)
Q Consensus 25 ~~l~~lg~~~~~~g~~~~A~~~~~~------al~~----~p~~~-~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~ 93 (788)
+.|-..|..+.+..++++|+++|++ ++++ .|... ..-...|.-+...|+++.|+..|-++-
T Consensus 662 elydkagdlfeki~d~dkale~fkkgdaf~kaielarfafp~evv~lee~wg~hl~~~~q~daainhfiea~-------- 733 (1636)
T KOG3616|consen 662 ELYDKAGDLFEKIHDFDKALECFKKGDAFGKAIELARFAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEAN-------- 733 (1636)
T ss_pred HHHHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhh--------
Confidence 3344455666666667777777654 2222 12211 112233555556666666666665431
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 003891 94 AYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNL 173 (788)
Q Consensus 94 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 173 (788)
....-........++.+|+..++........ ...|-.++.-|...|+++-|.+.|.++- .....
T Consensus 734 ~~~kaieaai~akew~kai~ildniqdqk~~--------s~yy~~iadhyan~~dfe~ae~lf~e~~--------~~~da 797 (1636)
T KOG3616|consen 734 CLIKAIEAAIGAKEWKKAISILDNIQDQKTA--------SGYYGEIADHYANKGDFEIAEELFTEAD--------LFKDA 797 (1636)
T ss_pred hHHHHHHHHhhhhhhhhhHhHHHHhhhhccc--------cccchHHHHHhccchhHHHHHHHHHhcc--------hhHHH
Confidence 1122222333444555555555544332211 1123334445555667777766665542 12223
Q ss_pred HHHHHHcCChHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHH
Q 003891 174 GVAYGEMLKFDMAIVFYELAFHFNPH-CAEACNNLGVIYKDRDNLDKAVECY 224 (788)
Q Consensus 174 a~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~eA~~~~ 224 (788)
..+|.+.|++++|.++-+++.. |. ....|...+.-+-+.|++.+|.++|
T Consensus 798 i~my~k~~kw~da~kla~e~~~--~e~t~~~yiakaedldehgkf~eaeqly 847 (1636)
T KOG3616|consen 798 IDMYGKAGKWEDAFKLAEECHG--PEATISLYIAKAEDLDEHGKFAEAEQLY 847 (1636)
T ss_pred HHHHhccccHHHHHHHHHHhcC--chhHHHHHHHhHHhHHhhcchhhhhhee
Confidence 3455666677666666555432 22 2334444555555556655555444
No 356
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=97.46 E-value=0.052 Score=61.14 Aligned_cols=162 Identities=13% Similarity=-0.005 Sum_probs=122.1
Q ss_pred HHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhh---hhh--hcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 003891 102 YKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGT---KVK--LEGDINQGVAYYKKALYYNWHYADAMYNLGVA 176 (788)
Q Consensus 102 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~---~~~--~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 176 (788)
.--.||-+.+++.+.++.+ ..+.......+....+...- +-. ...+.+.|.+.++...+..|+..-..+..|.+
T Consensus 198 vGF~gdR~~GL~~L~~~~~-~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~ 276 (468)
T PF10300_consen 198 VGFSGDRELGLRLLWEASK-SENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPNSALFLFFEGRL 276 (468)
T ss_pred cCcCCcHHHHHHHHHHHhc-cCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 3346899999999999887 33322222222222222111 111 35688999999999999999999999999999
Q ss_pred HHHcCChHHHHHHHHHHHhcCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHHcCCH
Q 003891 177 YGEMLKFDMAIVFYELAFHFNPH----CAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNF-SQSLNNLGVVYTVQGKM 251 (788)
Q Consensus 177 ~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~ 251 (788)
+...|+.++|++.|++++..... ..-.++.++.++..+.+|++|..++.+..+.+.-. ....+..|.++...++.
T Consensus 277 ~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~ 356 (468)
T PF10300_consen 277 ERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAAACLLMLGRE 356 (468)
T ss_pred HHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccc
Confidence 99999999999999998854332 24567889999999999999999999999876543 33556778899999999
Q ss_pred -------HHHHHHHHHHHHh
Q 003891 252 -------DAAAEMIEKAIAA 264 (788)
Q Consensus 252 -------~eA~~~l~kal~~ 264 (788)
++|.++++++-..
T Consensus 357 ~~~~~~~~~a~~l~~~vp~l 376 (468)
T PF10300_consen 357 EEAKEHKKEAEELFRKVPKL 376 (468)
T ss_pred hhhhhhHHHHHHHHHHHHHH
Confidence 7777777776544
No 357
>PLN02208 glycosyltransferase family protein
Probab=97.44 E-value=0.0019 Score=71.84 Aligned_cols=152 Identities=12% Similarity=0.063 Sum_probs=92.9
Q ss_pred CCCCeEEEecCCCCcCCHH-HHHHHHHH-HhHcCCcEEEEecCCCC--C--HHHHHHHHHHHHHcCCCCCcEEEcCCcCC
Q 003891 523 TNGFITFGSFNNLAKITPK-VLQVWARI-LCAVPNSRLVVKCKPFC--C--DSVRHRFLSTLEQLGLESLRVDLLPLILL 596 (788)
Q Consensus 523 ~~~~~~f~~~~~~~K~~~~-~~~~~~~i-l~~~p~~~l~l~~~~~~--~--~~~~~~l~~~~~~~gi~~~rv~~~~~~~~ 596 (788)
+.+.|+|-||++..++.++ +.++...+ ....|. +|+...+.+ . +...+.+..+... ..+++.++.|
T Consensus 249 ~~~sVvyvSfGS~~~l~~~q~~e~~~~l~~s~~pf--~wv~r~~~~~~~~~~~lp~~f~~r~~~-----~g~~v~~W~P- 320 (442)
T PLN02208 249 PPKSVVFCSLGSQIILEKDQFQELCLGMELTGLPF--LIAVKPPRGSSTVQEGLPEGFEERVKG-----RGVVWGGWVQ- 320 (442)
T ss_pred CCCcEEEEeccccccCCHHHHHHHHHHHHhCCCcE--EEEEeCCCcccchhhhCCHHHHHHHhc-----CCcEeeccCC-
Confidence 3467899999999998887 77777776 777775 565542211 0 1223344444432 3456678887
Q ss_pred cHHHHHhcccccEeecCCCCCCchhHHHHhhhCCceeecCC--CccCccchhHHHh-hhCCccccc------CCHHHHHH
Q 003891 597 NHDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAG--SVHAHNVGVSLLT-KVGLKHLIA------KNEDEYVQ 667 (788)
Q Consensus 597 ~~~~~~~~~~~Dv~Ld~~~~~g~~t~~eal~~GvPvvt~~g--~~~~~r~~~~~l~-~~gl~~~ia------~~~~~y~~ 667 (788)
+.+.+. ...+..|+ ..+|-++++||+++|||+|+++- +.+ ..+.++. .+|+.--+- -+.++..+
T Consensus 321 Q~~iL~-H~~v~~Fv---tHcG~nS~~Eai~~GVP~l~~P~~~DQ~---~na~~~~~~~g~gv~~~~~~~~~~~~~~l~~ 393 (442)
T PLN02208 321 QPLILD-HPSIGCFV---NHCGPGTIWESLVSDCQMVLIPFLSDQV---LFTRLMTEEFEVSVEVSREKTGWFSKESLSN 393 (442)
T ss_pred HHHHhc-CCccCeEE---ccCCchHHHHHHHcCCCEEecCcchhhH---HHHHHHHHHhceeEEeccccCCcCcHHHHHH
Confidence 666664 34455676 23778899999999999999883 332 2333333 255543221 15566666
Q ss_pred HHHHHhcCH-HHHHHHHHHHHHH
Q 003891 668 LALQLASDV-TALANLRMSLRDL 689 (788)
Q Consensus 668 ~a~~l~~d~-~~~~~~r~~~~~~ 689 (788)
...++..++ +..+++|+++++.
T Consensus 394 ai~~~m~~~~e~g~~~r~~~~~~ 416 (442)
T PLN02208 394 AIKSVMDKDSDLGKLVRSNHTKL 416 (442)
T ss_pred HHHHHhcCCchhHHHHHHHHHHH
Confidence 666666655 4556666666543
No 358
>PLN02207 UDP-glycosyltransferase
Probab=97.44 E-value=0.0049 Score=68.91 Aligned_cols=103 Identities=18% Similarity=0.151 Sum_probs=74.9
Q ss_pred CCCCeEEEecCCCCcCCHHHHHHHHHHHhHcCCcEEEEecCCCC--CHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHH
Q 003891 523 TNGFITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFC--CDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDH 600 (788)
Q Consensus 523 ~~~~~~f~~~~~~~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~--~~~~~~~l~~~~~~~gi~~~rv~~~~~~~~~~~~ 600 (788)
+.+.|+|.||++..++.++.++..+.-|...+...||.+..+.. .+.+.+.+.++ + .+|..+.++.| +.+.
T Consensus 273 ~~~sVVyvSfGS~~~~~~~q~~ela~~l~~~~~~flW~~r~~~~~~~~~lp~~f~er-----~-~~~g~i~~W~P-Q~~I 345 (468)
T PLN02207 273 PEASVVFLCFGSMGRLRGPLVKEIAHGLELCQYRFLWSLRTEEVTNDDLLPEGFLDR-----V-SGRGMICGWSP-QVEI 345 (468)
T ss_pred CCCcEEEEEeccCcCCCHHHHHHHHHHHHHCCCcEEEEEeCCCccccccCCHHHHhh-----c-CCCeEEEEeCC-HHHH
Confidence 34579999999999999999999999999999988998864311 01111233322 2 26777778987 5666
Q ss_pred HHhcccccEeecCCCCCCchhHHHHhhhCCceeecC
Q 003891 601 MQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMA 636 (788)
Q Consensus 601 ~~~~~~~Dv~Ld~~~~~g~~t~~eal~~GvPvvt~~ 636 (788)
+.- ..+..|+ ..+|.++++||+++|||+|+++
T Consensus 346 L~H-~~vg~Fv---TH~GwnS~~Eai~~GVP~l~~P 377 (468)
T PLN02207 346 LAH-KAVGGFV---SHCGWNSIVESLWFGVPIVTWP 377 (468)
T ss_pred hcc-cccceee---ecCccccHHHHHHcCCCEEecC
Confidence 643 4455566 2377889999999999999988
No 359
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.42 E-value=0.016 Score=61.88 Aligned_cols=189 Identities=19% Similarity=0.144 Sum_probs=110.8
Q ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh----CCCcHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHH-HHHhCCC
Q 003891 91 YAEAYCNMGVIYKNRGDLESAIACYERCLAV----SPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKK-ALYYNWH 165 (788)
Q Consensus 91 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~-al~~~p~ 165 (788)
.+++..++-..|....+|+.-++..+..-.+ .++.......++.++... ...|+.++|+..+.. .....+.
T Consensus 140 s~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRr----n~~gdre~Al~il~~~l~~~~~~ 215 (374)
T PF13281_consen 140 SPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRR----NKPGDREKALQILLPVLESDENP 215 (374)
T ss_pred ChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhc----ccCCCHHHHHHHHHHHHhccCCC
Confidence 4567778888899999999999999887666 333444444555555441 237899999999999 4455677
Q ss_pred CHHHHHHHHHHHHHc---------CChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH
Q 003891 166 YADAMYNLGVAYGEM---------LKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQ 236 (788)
Q Consensus 166 ~~~~~~~la~~~~~~---------g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~ 236 (788)
+++.+..+|.+|-.. ...++|+..|.++.+.+|+. ..-.|++.++...|...+...-+++..
T Consensus 216 ~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~-Y~GIN~AtLL~~~g~~~~~~~el~~i~-------- 286 (374)
T PF13281_consen 216 DPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDY-YSGINAATLLMLAGHDFETSEELRKIG-------- 286 (374)
T ss_pred ChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccc-cchHHHHHHHHHcCCcccchHHHHHHH--------
Confidence 889999999888542 12344444444444444321 222223333333332211111111110
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhhH
Q 003891 237 SLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAG 306 (788)
Q Consensus 237 ~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~a~ 306 (788)
..+...+.+.|.. -.-.+...+-.++.+..-.|++++|.+++++++++.|......
T Consensus 287 --~~l~~llg~kg~~------------~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W~l~ 342 (374)
T PF13281_consen 287 --VKLSSLLGRKGSL------------EKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPAWELE 342 (374)
T ss_pred --HHHHHHHHhhccc------------cccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcchhHH
Confidence 0111111111111 1112233445677788889999999999999999988876543
No 360
>PLN02448 UDP-glycosyltransferase family protein
Probab=97.42 E-value=0.006 Score=68.70 Aligned_cols=135 Identities=14% Similarity=0.089 Sum_probs=86.8
Q ss_pred CCCeEEEecCCCCcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHHHHh
Q 003891 524 NGFITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQA 603 (788)
Q Consensus 524 ~~~~~f~~~~~~~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~~~~l~~~~~~~gi~~~rv~~~~~~~~~~~~~~~ 603 (788)
.+.++|.||++...+.++.++...+-|...+...+|..... ...+.+. ..+++.+.+++| +.+.+..
T Consensus 273 ~~~vvyvsfGs~~~~~~~~~~~~~~~l~~~~~~~lw~~~~~------~~~~~~~------~~~~~~v~~w~p-Q~~iL~h 339 (459)
T PLN02448 273 EGSVLYVSLGSFLSVSSAQMDEIAAGLRDSGVRFLWVARGE------ASRLKEI------CGDMGLVVPWCD-QLKVLCH 339 (459)
T ss_pred CCceEEEeecccccCCHHHHHHHHHHHHhCCCCEEEEEcCc------hhhHhHh------ccCCEEEeccCC-HHHHhcc
Confidence 45688999999988999999999999999888777755422 1112211 136788889987 5666643
Q ss_pred cccccEeecCCCCCCchhHHHHhhhCCceeecCCCccCccchhHHHhh-hCCcccc--------cCCHHHHHHHHHHHhc
Q 003891 604 YSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTK-VGLKHLI--------AKNEDEYVQLALQLAS 674 (788)
Q Consensus 604 ~~~~Dv~Ld~~~~~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l~~-~gl~~~i--------a~~~~~y~~~a~~l~~ 674 (788)
..+..|+ ..+|.+|++||+++|||+|+++-- .-....+..+.. +|+.--+ .-+.++..+...++..
T Consensus 340 -~~v~~fv---tHgG~nS~~eal~~GvP~l~~P~~-~DQ~~na~~v~~~~g~G~~~~~~~~~~~~~~~~~l~~av~~vl~ 414 (459)
T PLN02448 340 -SSVGGFW---THCGWNSTLEAVFAGVPMLTFPLF-WDQPLNSKLIVEDWKIGWRVKREVGEETLVGREEIAELVKRFMD 414 (459)
T ss_pred -CccceEE---ecCchhHHHHHHHcCCCEEecccc-ccchhhHHHHHHHhCceEEEecccccCCcCcHHHHHHHHHHHhc
Confidence 3344466 247788999999999999999831 112222333322 2332212 1256777777777776
Q ss_pred CH
Q 003891 675 DV 676 (788)
Q Consensus 675 d~ 676 (788)
|+
T Consensus 415 ~~ 416 (459)
T PLN02448 415 LE 416 (459)
T ss_pred CC
Confidence 64
No 361
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=97.42 E-value=0.14 Score=53.50 Aligned_cols=226 Identities=13% Similarity=-0.022 Sum_probs=131.1
Q ss_pred HHcCCHHHHHHHHHHHHHhC----CC----CHHHHHHHHHHHHHCC-CHHHHHHHHHHHHhhC-------CCcHHHHHHH
Q 003891 69 SELMQYDTALGCYEKAALER----PM----YAEAYCNMGVIYKNRG-DLESAIACYERCLAVS-------PNFEIAKNNM 132 (788)
Q Consensus 69 ~~~g~~~~A~~~~~kal~~~----p~----~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~-------p~~~~~~~~l 132 (788)
...|+++.|..++.|+-... |+ ....+++.|......+ ++++|...++++.++- ...++.....
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr 83 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR 83 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence 34566666666666664432 22 1345666677677777 7777777777777662 2223333444
Q ss_pred HHHHHHhhhhhhhcCCH---HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC---CCHHHHHH
Q 003891 133 AIALTDLGTKVKLEGDI---NQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNP---HCAEACNN 206 (788)
Q Consensus 133 a~~l~~lg~~~~~~g~~---~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~~ 206 (788)
..++..++..+...+.. ++|..+.+.+....|+.+..+...-.++.+.++.+++.+.+.+++...+ .+......
T Consensus 84 ~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~l~ 163 (278)
T PF08631_consen 84 LSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSESNFDSILH 163 (278)
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcccccchHHHHHH
Confidence 56677777777766654 4566666667677788888776666666668999999999999987644 22222222
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHH---HHHHHcC--C------HHHHHHHHHHHHHh--CCCCH--
Q 003891 207 LGVIYKDRDNLDKAVECYQMALSI--KPNFSQSLNNLG---VVYTVQG--K------MDAAAEMIEKAIAA--NPTYA-- 269 (788)
Q Consensus 207 la~~~~~~g~~~eA~~~~~~al~~--~p~~~~~~~~la---~~~~~~g--~------~~eA~~~l~kal~~--~p~~~-- 269 (788)
....+.. .....|..++.+.+.. .|.... +.... .++...+ + .+...+.+....+. .|-..
T Consensus 164 ~i~~l~~-~~~~~a~~~ld~~l~~r~~~~~~~-~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~~~ 241 (278)
T PF08631_consen 164 HIKQLAE-KSPELAAFCLDYLLLNRFKSSEDQ-WLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSAEA 241 (278)
T ss_pred HHHHHHh-hCcHHHHHHHHHHHHHHhCCChhH-HHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCHHH
Confidence 2222222 3445677777776654 222221 22222 2222222 2 22233333322221 22222
Q ss_pred -----HHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003891 270 -----EAYNNLGVLYRDAGSISLAIDAYEQCL 296 (788)
Q Consensus 270 -----~~~~~la~~~~~~g~~~eA~~~~~~al 296 (788)
..+.+.|.-.++.++|++|.++|+-++
T Consensus 242 ~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 242 ASAIHTLLWNKGKKHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 234567888899999999999999776
No 362
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.39 E-value=0.00018 Score=48.48 Aligned_cols=32 Identities=34% Similarity=0.649 Sum_probs=18.0
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Q 003891 47 YYEALKIDPHYAPAYYNLGVVYSELMQYDTAL 78 (788)
Q Consensus 47 ~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~ 78 (788)
|+++++++|+++.+|+++|.+|...|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 45555555555555555555555555555553
No 363
>PRK09814 beta-1,6-galactofuranosyltransferase; Provisional
Probab=97.39 E-value=0.00083 Score=72.50 Aligned_cols=132 Identities=10% Similarity=0.039 Sum_probs=86.9
Q ss_pred eEEEecCCCCcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHHHHhccc
Q 003891 527 ITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSL 606 (788)
Q Consensus 527 ~~f~~~~~~~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~~~~l~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~ 606 (788)
.+++..+++.|.. . +....|+.+|++.|.|. .+. ... ++|.|.|+++ .++....|+.
T Consensus 170 ~~i~yaG~l~k~~--~------l~~~~~~~~l~i~G~g~----~~~---------~~~-~~V~f~G~~~-~eel~~~l~~ 226 (333)
T PRK09814 170 KKINFAGNLEKSP--F------LKNWSQGIKLTVFGPNP----EDL---------ENS-ANISYKGWFD-PEELPNELSK 226 (333)
T ss_pred ceEEEecChhhch--H------HHhcCCCCeEEEECCCc----ccc---------ccC-CCeEEecCCC-HHHHHHHHhc
Confidence 3566667887642 1 11135788999998772 211 233 7999999998 6788777776
Q ss_pred ccEeecCC------------CCCCchhHHHHhhhCCceeecCCCccCccchhHHHhhhCCcccccCCHHHHHHHHHHHhc
Q 003891 607 MDISLDTF------------PYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIAKNEDEYVQLALQLAS 674 (788)
Q Consensus 607 ~Dv~Ld~~------------~~~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l~~~gl~~~ia~~~~~y~~~a~~l~~ 674 (788)
|+.|-+. .++...-+.++|++|+|||+....... .++.. +-.++++++.++..+....+
T Consensus 227 -~~gLv~~~~~~~~~~~~y~~~~~P~K~~~ymA~G~PVI~~~~~~~~-----~~V~~-~~~G~~v~~~~el~~~l~~~-- 297 (333)
T PRK09814 227 -GFGLVWDGDTNDGEYGEYYKYNNPHKLSLYLAAGLPVIVWSKAAIA-----DFIVE-NGLGFVVDSLEELPEIIDNI-- 297 (333)
T ss_pred -CcCeEEcCCCCCccchhhhhccchHHHHHHHHCCCCEEECCCccHH-----HHHHh-CCceEEeCCHHHHHHHHHhc--
Confidence 6544222 356667789999999999984432211 22333 44456667888888888775
Q ss_pred CHHHHHHHHHHHHHHh
Q 003891 675 DVTALANLRMSLRDLM 690 (788)
Q Consensus 675 d~~~~~~~r~~~~~~~ 690 (788)
+.+.+.+|+++.++..
T Consensus 298 ~~~~~~~m~~n~~~~~ 313 (333)
T PRK09814 298 TEEEYQEMVENVKKIS 313 (333)
T ss_pred CHHHHHHHHHHHHHHH
Confidence 4577888998887653
No 364
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.38 E-value=0.00018 Score=48.40 Aligned_cols=32 Identities=53% Similarity=0.701 Sum_probs=18.6
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Q 003891 258 IEKAIAANPTYAEAYNNLGVLYRDAGSISLAI 289 (788)
Q Consensus 258 l~kal~~~p~~~~~~~~la~~~~~~g~~~eA~ 289 (788)
|+++++++|+++.+|+++|.+|...|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 45555555655666666666665555555554
No 365
>PLN02562 UDP-glycosyltransferase
Probab=97.38 E-value=0.0065 Score=67.99 Aligned_cols=143 Identities=12% Similarity=0.083 Sum_probs=89.7
Q ss_pred CCeEEEecCCCC-cCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHHHHh
Q 003891 525 GFITFGSFNNLA-KITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQA 603 (788)
Q Consensus 525 ~~~~f~~~~~~~-K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~~~~l~~~~~~~gi~~~rv~~~~~~~~~~~~~~~ 603 (788)
+.++|-||++.. .+.++.++..+..+...+.-.||.+..+.. +.....+.++ + ++|+.+.+++| +.+.+.-
T Consensus 273 ~svvyvsfGS~~~~~~~~~~~~l~~~l~~~g~~fiW~~~~~~~-~~l~~~~~~~-----~-~~~~~v~~w~P-Q~~iL~h 344 (448)
T PLN02562 273 NSVIYISFGSWVSPIGESNVRTLALALEASGRPFIWVLNPVWR-EGLPPGYVER-----V-SKQGKVVSWAP-QLEVLKH 344 (448)
T ss_pred CceEEEEecccccCCCHHHHHHHHHHHHHCCCCEEEEEcCCch-hhCCHHHHHH-----h-ccCEEEEecCC-HHHHhCC
Confidence 457899999864 789999999999999999988887754311 0111122222 2 36888889987 5665543
Q ss_pred cccccEeecCCCCCCchhHHHHhhhCCceeecC--CCccCccchhHHHh-hhCCcccc-cCCHHHHHHHHHHHhcCHHHH
Q 003891 604 YSLMDISLDTFPYAGTTTTCESLYMGVPCVTMA--GSVHAHNVGVSLLT-KVGLKHLI-AKNEDEYVQLALQLASDVTAL 679 (788)
Q Consensus 604 ~~~~Dv~Ld~~~~~g~~t~~eal~~GvPvvt~~--g~~~~~r~~~~~l~-~~gl~~~i-a~~~~~y~~~a~~l~~d~~~~ 679 (788)
..+-.|+ ..+|-+|++||+++|||+|+++ ++.+. .+..+. .+|+.=-+ .-+.++..+...++..|++.+
T Consensus 345 -~~v~~fv---tH~G~nS~~Eal~~GvP~l~~P~~~DQ~~---na~~~~~~~g~g~~~~~~~~~~l~~~v~~~l~~~~~r 417 (448)
T PLN02562 345 -QAVGCYL---THCGWNSTMEAIQCQKRLLCYPVAGDQFV---NCAYIVDVWKIGVRISGFGQKEVEEGLRKVMEDSGMG 417 (448)
T ss_pred -CccceEE---ecCcchhHHHHHHcCCCEEeCCcccchHH---HHHHHHHHhCceeEeCCCCHHHHHHHHHHHhCCHHHH
Confidence 3344566 2477889999999999999987 33222 222221 12332101 126677666666666777655
Q ss_pred HHH
Q 003891 680 ANL 682 (788)
Q Consensus 680 ~~~ 682 (788)
++.
T Consensus 418 ~~a 420 (448)
T PLN02562 418 ERL 420 (448)
T ss_pred HHH
Confidence 443
No 366
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=97.38 E-value=0.0042 Score=67.65 Aligned_cols=102 Identities=19% Similarity=0.168 Sum_probs=89.3
Q ss_pred HcCChHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 003891 179 EMLKFDMAIVFYELAFHFNPHC-AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEM 257 (788)
Q Consensus 179 ~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~ 257 (788)
..|+...|++++..++...|.. .....+++.++.+.|-..+|-.++.+++.++...+-.++.+|+.+..+.+.++|++.
T Consensus 619 ~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~~ 698 (886)
T KOG4507|consen 619 AVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALEA 698 (886)
T ss_pred ecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHHH
Confidence 4578888999999998887764 346788999999999999999999999999988889999999999999999999999
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHH
Q 003891 258 IEKAIAANPTYAEAYNNLGVLYR 280 (788)
Q Consensus 258 l~kal~~~p~~~~~~~~la~~~~ 280 (788)
+++|++++|+++..-..|-.+-.
T Consensus 699 ~~~a~~~~~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 699 FRQALKLTTKCPECENSLKLIRC 721 (886)
T ss_pred HHHHHhcCCCChhhHHHHHHHHH
Confidence 99999999999887766655543
No 367
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=97.36 E-value=0.098 Score=60.63 Aligned_cols=64 Identities=25% Similarity=0.286 Sum_probs=28.8
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHh
Q 003891 97 NMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYY 162 (788)
Q Consensus 97 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~ 162 (788)
..|.+....|++++|++..+.++..-|.+. +.....++..+|....-.|++++|..+...+.+.
T Consensus 463 L~a~val~~~~~e~a~~lar~al~~L~~~~--~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~ 526 (894)
T COG2909 463 LRAQVALNRGDPEEAEDLARLALVQLPEAA--YRSRIVALSVLGEAAHIRGELTQALALMQQAEQM 526 (894)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhccccc--chhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHH
Confidence 334444445555555555555554444332 2222333444444444445555555444444443
No 368
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.34 E-value=0.055 Score=62.82 Aligned_cols=63 Identities=21% Similarity=0.226 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhhHHhHHHHhhhccCCCchHHHHHHHHHHHH
Q 003891 269 AEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHRDWGKR 334 (788)
Q Consensus 269 ~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~a~~~~lla~~~l~~g~~~~~~~~~~~~~~~ 334 (788)
++-+-.+...|...|-+++-+..++.++-+...+...+..+ +..|. .-..++..+..+-+..+
T Consensus 1279 adeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTEL--aiLYs-kykp~km~EHl~LFwsR 1341 (1666)
T KOG0985|consen 1279 ADELEELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTEL--AILYS-KYKPEKMMEHLKLFWSR 1341 (1666)
T ss_pred hHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHH--HHHHH-hcCHHHHHHHHHHHHHh
Confidence 34455677778888888888888888887766555554442 33332 23455555554444433
No 369
>PLN00414 glycosyltransferase family protein
Probab=97.34 E-value=0.0063 Score=67.89 Aligned_cols=155 Identities=10% Similarity=0.036 Sum_probs=92.9
Q ss_pred CCCCeEEEecCCCCcCCH-HHHHHHHHHHhHcCCcEEEEecCCCC----CHHHHHHHHHHHHHcCCCCCcEEEcCCcCCc
Q 003891 523 TNGFITFGSFNNLAKITP-KVLQVWARILCAVPNSRLVVKCKPFC----CDSVRHRFLSTLEQLGLESLRVDLLPLILLN 597 (788)
Q Consensus 523 ~~~~~~f~~~~~~~K~~~-~~~~~~~~il~~~p~~~l~l~~~~~~----~~~~~~~l~~~~~~~gi~~~rv~~~~~~~~~ 597 (788)
+.+.|+|.||++...+++ ++.++ +.=|...-.--||++..+.+ .+...+.+.++.+..| +++.+++| +
T Consensus 250 ~~~sVvyvsfGS~~~~~~~q~~e~-a~gL~~s~~~Flwvvr~~~~~~~~~~~lp~~f~~r~~~~g-----~vv~~w~P-Q 322 (446)
T PLN00414 250 EPGSVVFCAFGTQFFFEKDQFQEF-CLGMELTGLPFLIAVMPPKGSSTVQEALPEGFEERVKGRG-----IVWEGWVE-Q 322 (446)
T ss_pred CCCceEEEeecccccCCHHHHHHH-HHHHHHcCCCeEEEEecCCCcccchhhCChhHHHHhcCCC-----eEEeccCC-H
Confidence 456799999999999985 45554 43344444445788754311 1123345555553322 45568887 5
Q ss_pred HHHHHhcccccEeecCCCCCCchhHHHHhhhCCceeecCCCccCccchhHHH-hhhCCccccc------CCHHHHHHHHH
Q 003891 598 HDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLL-TKVGLKHLIA------KNEDEYVQLAL 670 (788)
Q Consensus 598 ~~~~~~~~~~Dv~Ld~~~~~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l-~~~gl~~~ia------~~~~~y~~~a~ 670 (788)
.+.+. ...++.|| ..+|.+|++||+++|||+|+++-- .-....+.++ ..+|+.--+. -+.++..+...
T Consensus 323 ~~vL~-h~~v~~fv---tH~G~nS~~Ea~~~GvP~l~~P~~-~dQ~~na~~~~~~~g~g~~~~~~~~~~~~~~~i~~~v~ 397 (446)
T PLN00414 323 PLILS-HPSVGCFV---NHCGFGSMWESLVSDCQIVFIPQL-ADQVLITRLLTEELEVSVKVQREDSGWFSKESLRDTVK 397 (446)
T ss_pred HHHhc-CCccceEE---ecCchhHHHHHHHcCCCEEecCcc-cchHHHHHHHHHHhCeEEEeccccCCccCHHHHHHHHH
Confidence 55553 34456677 247888999999999999999842 1123344445 3455542221 26667777677
Q ss_pred HHhcCH-HHHHHHHHHHHHH
Q 003891 671 QLASDV-TALANLRMSLRDL 689 (788)
Q Consensus 671 ~l~~d~-~~~~~~r~~~~~~ 689 (788)
++..|. +..+++|++.++.
T Consensus 398 ~~m~~~~e~g~~~r~~a~~~ 417 (446)
T PLN00414 398 SVMDKDSEIGNLVKRNHKKL 417 (446)
T ss_pred HHhcCChhhHHHHHHHHHHH
Confidence 766654 4556666666543
No 370
>PLN00164 glucosyltransferase; Provisional
Probab=97.33 E-value=0.0041 Score=70.15 Aligned_cols=150 Identities=15% Similarity=0.100 Sum_probs=91.6
Q ss_pred CCCeEEEecCCCCcCCHHHHHHHHHHHhHcCCcEEEEecCCCC-------CHH----HHHHHHHHHHHcCCCCCcEEEcC
Q 003891 524 NGFITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFC-------CDS----VRHRFLSTLEQLGLESLRVDLLP 592 (788)
Q Consensus 524 ~~~~~f~~~~~~~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~-------~~~----~~~~l~~~~~~~gi~~~rv~~~~ 592 (788)
.+.|+|.||++...++++.++-.+.-|...+..-||++..+.. +.. ..+.+.++.+. ..+++.+
T Consensus 271 ~~svvyvsfGS~~~~~~~q~~ela~gL~~s~~~flWv~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~-----~g~~v~~ 345 (480)
T PLN00164 271 PASVVFLCFGSMGFFDAPQVREIAAGLERSGHRFLWVLRGPPAAGSRHPTDADLDELLPEGFLERTKG-----RGLVWPT 345 (480)
T ss_pred CCceEEEEecccccCCHHHHHHHHHHHHHcCCCEEEEEcCCcccccccccccchhhhCChHHHHHhcC-----CCeEEee
Confidence 3568899999998999988999999999999988888764311 001 11233333222 2355668
Q ss_pred CcCCcHHHHHhcccccEeecCCCCCCchhHHHHhhhCCceeecC--CCccCccchhHHH-hhhCCccccc--------CC
Q 003891 593 LILLNHDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMA--GSVHAHNVGVSLL-TKVGLKHLIA--------KN 661 (788)
Q Consensus 593 ~~~~~~~~~~~~~~~Dv~Ld~~~~~g~~t~~eal~~GvPvvt~~--g~~~~~r~~~~~l-~~~gl~~~ia--------~~ 661 (788)
++| +.+.+.- ..+-.|| ..+|-+|++||+++|||+|+++ ++.+ ..+.++ ..+|+.-.+. -+
T Consensus 346 w~P-Q~~iL~h-~~vg~fv---tH~GwnS~~Eai~~GVP~l~~P~~~DQ~---~Na~~~~~~~gvG~~~~~~~~~~~~~~ 417 (480)
T PLN00164 346 WAP-QKEILAH-AAVGGFV---THCGWNSVLESLWHGVPMAPWPLYAEQH---LNAFELVADMGVAVAMKVDRKRDNFVE 417 (480)
T ss_pred cCC-HHHHhcC-cccCeEE---eecccchHHHHHHcCCCEEeCCccccch---hHHHHHHHHhCeEEEeccccccCCcCc
Confidence 887 5555543 3334566 2477889999999999999988 3322 223223 4455543221 14
Q ss_pred HHHHHHHHHHHhcCHH-HHHHHHHHH
Q 003891 662 EDEYVQLALQLASDVT-ALANLRMSL 686 (788)
Q Consensus 662 ~~~y~~~a~~l~~d~~-~~~~~r~~~ 686 (788)
.++..+...++..|++ ..+++|++.
T Consensus 418 ~e~l~~av~~vm~~~~~~~~~~r~~a 443 (480)
T PLN00164 418 AAELERAVRSLMGGGEEEGRKAREKA 443 (480)
T ss_pred HHHHHHHHHHHhcCCchhHHHHHHHH
Confidence 5666666667666543 233444444
No 371
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=97.33 E-value=0.31 Score=57.12 Aligned_cols=287 Identities=15% Similarity=0.010 Sum_probs=182.6
Q ss_pred hHHHHHHHHHHHHhC-CC---CHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCC--C----HHHHHHHHHHHHHCCCH
Q 003891 40 TQDGIQKYYEALKID-PH---YAPAYYNLGVVYS-ELMQYDTALGCYEKAALERPM--Y----AEAYCNMGVIYKNRGDL 108 (788)
Q Consensus 40 ~~~A~~~~~~al~~~-p~---~~~~~~~lg~~~~-~~g~~~~A~~~~~kal~~~p~--~----~~~~~~la~~~~~~g~~ 108 (788)
...|+++++-+++.. +. .+.+.+.+|.+++ ...++++|..+++|++.+... . ..+.+.++.++.+.+..
T Consensus 37 I~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~ 116 (608)
T PF10345_consen 37 IATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPK 116 (608)
T ss_pred HHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHH
Confidence 346778887777422 11 3668899999888 789999999999999877643 2 23566778999998887
Q ss_pred HHHHHHHHHHHhhCCCcHHH-HHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHhCC--CCHHH----HHHHHHHHHHcC
Q 003891 109 ESAIACYERCLAVSPNFEIA-KNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNW--HYADA----MYNLGVAYGEML 181 (788)
Q Consensus 109 ~~A~~~~~~al~~~p~~~~~-~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p--~~~~~----~~~la~~~~~~g 181 (788)
. |...+++.++........ |...-.. .. .......+++..|++.++....... .++.+ ....+.+....+
T Consensus 117 ~-a~~~l~~~I~~~~~~~~~~w~~~frl-l~-~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~ 193 (608)
T PF10345_consen 117 A-ALKNLDKAIEDSETYGHSAWYYAFRL-LK-IQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRG 193 (608)
T ss_pred H-HHHHHHHHHHHHhccCchhHHHHHHH-HH-HHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCC
Confidence 7 999999999876662221 2211111 11 1112222799999999999988763 44432 334466667778
Q ss_pred ChHHHHHHHHHHHhcC------C----CCHHHHHHHHH--HHHHcCCHHHHHHHHHHH---Hhh---CC---C---C---
Q 003891 182 KFDMAIVFYELAFHFN------P----HCAEACNNLGV--IYKDRDNLDKAVECYQMA---LSI---KP---N---F--- 234 (788)
Q Consensus 182 ~~~~A~~~~~~al~~~------p----~~~~~~~~la~--~~~~~g~~~eA~~~~~~a---l~~---~p---~---~--- 234 (788)
..+++++..+++.... + ....++..+-. ++...|+++.+...+++. ++. .+ . +
T Consensus 194 ~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~~~~~~w~~~~~d~~i 273 (608)
T PF10345_consen 194 SPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDEIKKSPSWPSWDEDGSI 273 (608)
T ss_pred CchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCccCCCcCCCeeE
Confidence 8888888888875431 1 12334444433 445667766666555443 221 11 0 0
Q ss_pred --------------HH-------------HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CCC------------
Q 003891 235 --------------SQ-------------SLNNLGVVYTVQGKMDAAAEMIEKAIAAN-------PTY------------ 268 (788)
Q Consensus 235 --------------~~-------------~~~~la~~~~~~g~~~eA~~~l~kal~~~-------p~~------------ 268 (788)
.. ++.--|......+..++|.++++++++.- +..
T Consensus 274 ~l~~~~~~~~~~~~~~~f~wl~~~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~ 353 (608)
T PF10345_consen 274 PLNIGEGSSNSGGTPLVFSWLPKEELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERI 353 (608)
T ss_pred EeecccccccCCCceeEEeecCHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhH
Confidence 00 22333455566677778888888887641 110
Q ss_pred -------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-------hhhHHhHHHHhhhccCCCchHHHHHHH
Q 003891 269 -------AEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDS-------RNAGQNRLLAMNYINEGHDDKLFEAHR 329 (788)
Q Consensus 269 -------~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~-------~~a~~~~lla~~~l~~g~~~~~~~~~~ 329 (788)
....+.++.+..-.+++.+|....+.+.+..... ......++.++.+...|+.+.+...+.
T Consensus 354 ~~~~~l~~~~~~y~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~ 428 (608)
T PF10345_consen 354 QWLRYLQCYLLFYQIWCNFIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQ 428 (608)
T ss_pred HHHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHh
Confidence 1234556777788999999999999887664322 235556677888888888887776554
No 372
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1
Probab=97.31 E-value=0.0024 Score=68.45 Aligned_cols=109 Identities=17% Similarity=0.235 Sum_probs=76.9
Q ss_pred CCCeEEEecCCCCcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHHHHh
Q 003891 524 NGFITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQA 603 (788)
Q Consensus 524 ~~~~~f~~~~~~~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~~~~l~~~~~~~gi~~~rv~~~~~~~~~~~~~~~ 603 (788)
++..++.+++..... ++ .+++++.|+..++++|.+. ... ..+.|.+.+.. ..++...
T Consensus 191 ~~~~iLv~~gg~~~~-----~~-~~~l~~~~~~~~~v~g~~~----~~~-----------~~~ni~~~~~~--~~~~~~~ 247 (318)
T PF13528_consen 191 DEPKILVYFGGGGPG-----DL-IEALKALPDYQFIVFGPNA----ADP-----------RPGNIHVRPFS--TPDFAEL 247 (318)
T ss_pred CCCEEEEEeCCCcHH-----HH-HHHHHhCCCCeEEEEcCCc----ccc-----------cCCCEEEeecC--hHHHHHH
Confidence 445567777766333 33 4677788988888886541 000 14788887764 2566777
Q ss_pred cccccEeecCCCCCCchhHHHHhhhCCceeecCCCc-cCccchhHHHhhhCCcccc
Q 003891 604 YSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSV-HAHNVGVSLLTKVGLKHLI 658 (788)
Q Consensus 604 ~~~~Dv~Ld~~~~~g~~t~~eal~~GvPvvt~~g~~-~~~r~~~~~l~~~gl~~~i 658 (788)
+..||+++.. +|.+|++||+++|+|+|+++-.. .-.+.-+..|..+|+...+
T Consensus 248 m~~ad~vIs~---~G~~t~~Ea~~~g~P~l~ip~~~~~EQ~~~a~~l~~~G~~~~~ 300 (318)
T PF13528_consen 248 MAAADLVISK---GGYTTISEALALGKPALVIPRPGQDEQEYNARKLEELGLGIVL 300 (318)
T ss_pred HHhCCEEEEC---CCHHHHHHHHHcCCCEEEEeCCCCchHHHHHHHHHHCCCeEEc
Confidence 7779999932 77888999999999999998654 4455668888889988765
No 373
>PLN02173 UDP-glucosyl transferase family protein
Probab=97.31 E-value=0.003 Score=70.28 Aligned_cols=139 Identities=15% Similarity=0.178 Sum_probs=86.8
Q ss_pred CCCeEEEecCCCCcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHHHHh
Q 003891 524 NGFITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQA 603 (788)
Q Consensus 524 ~~~~~f~~~~~~~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~~~~l~~~~~~~gi~~~rv~~~~~~~~~~~~~~~ 603 (788)
.+.++|.||++...++++.++-.+.-|...| -||.+..+. .+...+.+.++ +..+++.+.+++| +.+.+.
T Consensus 263 ~~svvyvsfGS~~~~~~~~~~ela~gLs~~~--flWvvr~~~-~~~lp~~~~~~-----~~~~~~~i~~W~P-Q~~iL~- 332 (449)
T PLN02173 263 QGSVVYIAFGSMAKLSSEQMEEIASAISNFS--YLWVVRASE-ESKLPPGFLET-----VDKDKSLVLKWSP-QLQVLS- 332 (449)
T ss_pred CCceEEEEecccccCCHHHHHHHHHHhcCCC--EEEEEeccc-hhcccchHHHh-----hcCCceEEeCCCC-HHHHhC-
Confidence 4568999999999999999998888886666 677775321 00111122222 2236788889988 566554
Q ss_pred cccccEeecCCCCCCchhHHHHhhhCCceeecCCCccCccchhHHHhh-hCCccccc-------CCHHHHHHHHHHHhcC
Q 003891 604 YSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTK-VGLKHLIA-------KNEDEYVQLALQLASD 675 (788)
Q Consensus 604 ~~~~Dv~Ld~~~~~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l~~-~gl~~~ia-------~~~~~y~~~a~~l~~d 675 (788)
...+..|| ..+|.+|++||+++|||+|+++--. -....+-++.. +|+.--|. -+.++..+...++..|
T Consensus 333 H~~v~~Fv---tHcGwnS~~Eai~~GVP~l~~P~~~-DQ~~Na~~v~~~~g~Gv~v~~~~~~~~~~~e~v~~av~~vm~~ 408 (449)
T PLN02173 333 NKAIGCFM---THCGWNSTMEGLSLGVPMVAMPQWT-DQPMNAKYIQDVWKVGVRVKAEKESGIAKREEIEFSIKEVMEG 408 (449)
T ss_pred CCccceEE---ecCccchHHHHHHcCCCEEecCchh-cchHHHHHHHHHhCceEEEeecccCCcccHHHHHHHHHHHhcC
Confidence 34455666 2478889999999999999988311 12233444432 13321111 1567777777776666
Q ss_pred H
Q 003891 676 V 676 (788)
Q Consensus 676 ~ 676 (788)
.
T Consensus 409 ~ 409 (449)
T PLN02173 409 E 409 (449)
T ss_pred C
Confidence 4
No 374
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=97.30 E-value=0.00042 Score=46.67 Aligned_cols=32 Identities=44% Similarity=0.768 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 003891 270 EAYNNLGVLYRDAGSISLAIDAYEQCLKIDPD 301 (788)
Q Consensus 270 ~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~ 301 (788)
.+|+++|.+|..+|++++|+.+|+++++++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 45667777777777777777777777777765
No 375
>PLN03015 UDP-glucosyl transferase
Probab=97.30 E-value=0.0028 Score=70.70 Aligned_cols=104 Identities=18% Similarity=0.111 Sum_probs=74.8
Q ss_pred CCCeEEEecCCCCcCCHHHHHHHHHHHhHcCCcEEEEecCCCC--------CH----HHHHHHHHHHHHcCCCCCcEEEc
Q 003891 524 NGFITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFC--------CD----SVRHRFLSTLEQLGLESLRVDLL 591 (788)
Q Consensus 524 ~~~~~f~~~~~~~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~--------~~----~~~~~l~~~~~~~gi~~~rv~~~ 591 (788)
.+.|+|.||++...+.++-++-.+.-|...+..-||.+..+.. .+ ...+++.++.+..| +++.
T Consensus 266 ~~sVvyvsFGS~~~~~~~q~~ela~gl~~s~~~FlWv~r~~~~~~~~~~~~~~~~~~~lp~~f~er~~~rG-----l~v~ 340 (470)
T PLN03015 266 ERSVVYVCLGSGGTLTFEQTVELAWGLELSGQRFVWVLRRPASYLGASSSDDDQVSASLPEGFLDRTRGVG-----LVVT 340 (470)
T ss_pred CCCEEEEECCcCCcCCHHHHHHHHHHHHhCCCcEEEEEecCccccccccccccchhhcCChHHHHhhccCc-----eEEE
Confidence 4568999999999999999999999999999999998853210 00 11233444333222 4566
Q ss_pred CCcCCcHHHHHhcccccEeecCCCCCCchhHHHHhhhCCceeecCC
Q 003891 592 PLILLNHDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAG 637 (788)
Q Consensus 592 ~~~~~~~~~~~~~~~~Dv~Ld~~~~~g~~t~~eal~~GvPvvt~~g 637 (788)
+++| +.+.+. ...+..|+ ..+|.+|++||+++|||+|+++-
T Consensus 341 ~W~P-Q~~vL~-h~~vg~fv---tH~GwnS~~Eai~~GvP~v~~P~ 381 (470)
T PLN03015 341 QWAP-QVEILS-HRSIGGFL---SHCGWSSVLESLTKGVPIVAWPL 381 (470)
T ss_pred ecCC-HHHHhc-cCccCeEE---ecCCchhHHHHHHcCCCEEeccc
Confidence 8887 566665 34455676 24778899999999999999883
No 376
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=97.29 E-value=0.004 Score=67.59 Aligned_cols=229 Identities=12% Similarity=0.092 Sum_probs=118.8
Q ss_pred HHHHHHHHhCCCcEEEeCCCCCCCCcccccccCCCCeEEecccCCCCCCC------CCccEEEecCCCCCcCccCCCc-c
Q 003891 423 KKVAAMVREDKIDILVELTGHTANNKLGMMACQPAPVQVTWIGYPNTTGL------PTIDYRITDSLADPPETKQKHV-E 495 (788)
Q Consensus 423 ~~~a~~i~~d~idilvdl~g~t~~~~~~~~a~r~Apvq~~~~g~~~ttg~------~~~Dy~i~d~~~~p~~~~~~~~-e 495 (788)
-++...++..++||+|=..|+.+ -+.+++.|...+-+...-.-.+.|+ +..|-+.++- | +....+. +
T Consensus 81 ~~~~~i~~~~kPdvvi~~Ggy~s--~p~~~aa~~~~~p~~i~e~n~~~g~~nr~~~~~a~~v~~~f---~-~~~~~~~~~ 154 (352)
T PRK12446 81 MDAYVRIRKLKPDVIFSKGGFVS--VPVVIGGWLNRVPVLLHESDMTPGLANKIALRFASKIFVTF---E-EAAKHLPKE 154 (352)
T ss_pred HHHHHHHHhcCCCEEEecCchhh--HHHHHHHHHcCCCEEEECCCCCccHHHHHHHHhhCEEEEEc---c-chhhhCCCC
Confidence 45677899999999997777764 2334444444433333222223343 4456655441 1 2222333 3
Q ss_pred ceEEcCCCccccCCCCCCC---CCCCCCCCCCCCeEEEecCC---CCcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHH
Q 003891 496 ELIRLPECFLCYTPSPEAG---PVCPTPALTNGFITFGSFNN---LAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDS 569 (788)
Q Consensus 496 ~l~~lp~~~~~~~~~~~~~---~~~~~~~~~~~~~~f~~~~~---~~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~ 569 (788)
+++..-. +..+..... ......+++++..++..++- ...++..+.+++..+. ++.++++..+.. .
T Consensus 155 k~~~tG~---Pvr~~~~~~~~~~~~~~~~l~~~~~~iLv~GGS~Ga~~in~~~~~~l~~l~---~~~~vv~~~G~~---~ 225 (352)
T PRK12446 155 KVIYTGS---PVREEVLKGNREKGLAFLGFSRKKPVITIMGGSLGAKKINETVREALPELL---LKYQIVHLCGKG---N 225 (352)
T ss_pred CeEEECC---cCCcccccccchHHHHhcCCCCCCcEEEEECCccchHHHHHHHHHHHHhhc---cCcEEEEEeCCc---h
Confidence 3322110 001100000 00112234444333433332 2334333334444332 234555443321 1
Q ss_pred HHHHHHHHHHHcCCCCCcEEEcCCcCCcHHHHHhcccccEeecCCCC-CCchhHHHHhhhCCceeecCCCc----cCccc
Q 003891 570 VRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSV----HAHNV 644 (788)
Q Consensus 570 ~~~~l~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~~Dv~Ld~~~~-~g~~t~~eal~~GvPvvt~~g~~----~~~r~ 644 (788)
....+ .. . ..+...+... ++.-..|..||+++ . +|++|+.|++++|+|.|..+-.. .....
T Consensus 226 ~~~~~----~~--~--~~~~~~~f~~--~~m~~~~~~adlvI----sr~G~~t~~E~~~~g~P~I~iP~~~~~~~~~Q~~ 291 (352)
T PRK12446 226 LDDSL----QN--K--EGYRQFEYVH--GELPDILAITDFVI----SRAGSNAIFEFLTLQKPMLLIPLSKFASRGDQIL 291 (352)
T ss_pred HHHHH----hh--c--CCcEEecchh--hhHHHHHHhCCEEE----ECCChhHHHHHHHcCCCEEEEcCCCCCCCchHHH
Confidence 22111 11 1 1233335431 34556778899998 6 78999999999999999886432 23445
Q ss_pred hhHHHhhhCCcccccC---CHHHHHHHHHHHhcCHHHHH
Q 003891 645 GVSLLTKVGLKHLIAK---NEDEYVQLALQLASDVTALA 680 (788)
Q Consensus 645 ~~~~l~~~gl~~~ia~---~~~~y~~~a~~l~~d~~~~~ 680 (788)
.+..+...|....+.. +.+...+...++.+|++.++
T Consensus 292 Na~~l~~~g~~~~l~~~~~~~~~l~~~l~~ll~~~~~~~ 330 (352)
T PRK12446 292 NAESFERQGYASVLYEEDVTVNSLIKHVEELSHNNEKYK 330 (352)
T ss_pred HHHHHHHCCCEEEcchhcCCHHHHHHHHHHHHcCHHHHH
Confidence 6777888887655533 56788888888989987654
No 377
>PLN02152 indole-3-acetate beta-glucosyltransferase
Probab=97.28 E-value=0.0089 Score=66.68 Aligned_cols=143 Identities=15% Similarity=0.168 Sum_probs=88.6
Q ss_pred CCCeEEEecCCCCcCCHHHHHHHHHHHhHcCCcEEEEecCCCCC-----HHHHHHH--HHHHHHcCCCCCcEEEcCCcCC
Q 003891 524 NGFITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFCC-----DSVRHRF--LSTLEQLGLESLRVDLLPLILL 596 (788)
Q Consensus 524 ~~~~~f~~~~~~~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~-----~~~~~~l--~~~~~~~gi~~~rv~~~~~~~~ 596 (788)
.+.|+|.||++...+..+.++-.+.-|...|...||.+..+... ......+ -+.+.+. + .+|..+.+++|
T Consensus 260 ~~sVvyvsfGS~~~l~~~q~~ela~gL~~s~~~flWv~r~~~~~~~~~~~~~~~~~~~~~~f~e~-~-~~~g~v~~W~P- 336 (455)
T PLN02152 260 ESSVIYVSFGTMVELSKKQIEELARALIEGKRPFLWVITDKLNREAKIEGEEETEIEKIAGFRHE-L-EEVGMIVSWCS- 336 (455)
T ss_pred CCceEEEEecccccCCHHHHHHHHHHHHHcCCCeEEEEecCcccccccccccccccccchhHHHh-c-cCCeEEEeeCC-
Confidence 45689999999999999999999999999999999987642110 0000000 0112111 2 36777789987
Q ss_pred cHHHHHhcccccEeecCCCCCCchhHHHHhhhCCceeecCC--CccCccchhHHHhh---hCCcccc----cCCHHHHHH
Q 003891 597 NHDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAG--SVHAHNVGVSLLTK---VGLKHLI----AKNEDEYVQ 667 (788)
Q Consensus 597 ~~~~~~~~~~~Dv~Ld~~~~~g~~t~~eal~~GvPvvt~~g--~~~~~r~~~~~l~~---~gl~~~i----a~~~~~y~~ 667 (788)
+.+.+.- ..+-.|+ ..+|.+|++||+++|||+|+++- +.+ ..+..+.. .|+.-.. .-+.++..+
T Consensus 337 Q~~iL~h-~~vg~fv---tH~G~nS~~Ea~~~GvP~l~~P~~~DQ~---~na~~~~~~~~~G~~~~~~~~~~~~~e~l~~ 409 (455)
T PLN02152 337 QIEVLRH-RAVGCFV---THCGWSSSLESLVLGVPVVAFPMWSDQP---ANAKLLEEIWKTGVRVRENSEGLVERGEIRR 409 (455)
T ss_pred HHHHhCC-cccceEE---eeCCcccHHHHHHcCCCEEeccccccch---HHHHHHHHHhCceEEeecCcCCcCcHHHHHH
Confidence 5665543 3333565 24788899999999999999883 322 22233322 2332111 115566666
Q ss_pred HHHHHhcCH
Q 003891 668 LALQLASDV 676 (788)
Q Consensus 668 ~a~~l~~d~ 676 (788)
...++..|+
T Consensus 410 av~~vm~~~ 418 (455)
T PLN02152 410 CLEAVMEEK 418 (455)
T ss_pred HHHHHHhhh
Confidence 666666554
No 378
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=97.27 E-value=0.026 Score=60.37 Aligned_cols=171 Identities=12% Similarity=0.082 Sum_probs=117.0
Q ss_pred HHHHHHHHcCCCChhhHHHHHHHHHHHHH-----HHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Q 003891 4 ASYHKALSADPSYKPAAECLAIVLTDLGT-----SLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTAL 78 (788)
Q Consensus 4 ~~~~kaL~~~P~~~~a~~~la~~l~~lg~-----~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~ 78 (788)
..+++.++.+|.+.++|..++...-.+.. ......-.+.-+.+|++|++.+|++...+..+-....+..+.++..
T Consensus 6 ~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~ 85 (321)
T PF08424_consen 6 AELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLA 85 (321)
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHH
Confidence 46899999999999998888765544432 1222233567889999999999999999998888888999999999
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHH---CCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhcCCHHHHHHH
Q 003891 79 GCYEKAALERPMYAEAYCNMGVIYKN---RGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAY 155 (788)
Q Consensus 79 ~~~~kal~~~p~~~~~~~~la~~~~~---~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~ 155 (788)
+-+++++..+|++...|..+-..... .-.+++....|.++++.-....... . ........
T Consensus 86 ~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~~----------~-------~~~~~~~~ 148 (321)
T PF08424_consen 86 KKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRSGR----------M-------TSHPDLPE 148 (321)
T ss_pred HHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhccc----------c-------ccccchhh
Confidence 99999999999998888766554443 3467888888888876532211000 0 00000000
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC
Q 003891 156 YKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFN 197 (788)
Q Consensus 156 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 197 (788)
.+. ....++..+.......|..+.|+..++..++.+
T Consensus 149 ~e~------~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n 184 (321)
T PF08424_consen 149 LEE------FMLYVFLRLCRFLRQAGYTERAVALWQALLEFN 184 (321)
T ss_pred HHH------HHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHH
Confidence 000 012344556666777777777777777777764
No 379
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.27 E-value=0.00063 Score=45.72 Aligned_cols=33 Identities=36% Similarity=0.668 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 003891 270 EAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDS 302 (788)
Q Consensus 270 ~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~ 302 (788)
.+++.+|.++..+|++++|+++|+++++++|++
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 456677777777777777777777777777764
No 380
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=97.24 E-value=0.007 Score=63.39 Aligned_cols=223 Identities=13% Similarity=0.070 Sum_probs=110.1
Q ss_pred CceEEEEEeccccCChhhHHHHHHHhhhCCeEEEccCC-----CHHHHHHHHHhCCCcEEEeCCCCCCCCcccccccCCC
Q 003891 383 QNYKVVVYSAVVKADAKTIRFREKVMKKGGIWRDIYGI-----DEKKVAAMVREDKIDILVELTGHTANNKLGMMACQPA 457 (788)
Q Consensus 383 ~~fev~~Y~~~~~~D~~t~~~r~~~~~~~~~~~~~~~~-----~~~~~a~~i~~d~idilvdl~g~t~~~~~~~~a~r~A 457 (788)
.+++|+.++..... ..-+.++. .+.....+.+- +..++.+.|.+.++|++|=-.-.+.. .. .-..|..
T Consensus 30 ~g~~v~f~~~~~~~-~~~~~i~~----~g~~v~~~~~~~~~~~d~~~~~~~l~~~~~d~vV~D~y~~~~-~~-~~~~k~~ 102 (279)
T TIGR03590 30 QGAEVAFACKPLPG-DLIDLLLS----AGFPVYELPDESSRYDDALELINLLEEEKFDILIVDHYGLDA-DW-EKLIKEF 102 (279)
T ss_pred CCCEEEEEeCCCCH-HHHHHHHH----cCCeEEEecCCCchhhhHHHHHHHHHhcCCCEEEEcCCCCCH-HH-HHHHHHh
Confidence 46788777655332 22223333 11122233322 23468899999999999843222221 11 1123322
Q ss_pred CeEEecccCCCCCCCCCccEEEecCCCCCcCccCCCcc-----ceEEcCCCccccCCCCC--CCCCCCCCCCCCCCeEEE
Q 003891 458 PVQVTWIGYPNTTGLPTIDYRITDSLADPPETKQKHVE-----ELIRLPECFLCYTPSPE--AGPVCPTPALTNGFITFG 530 (788)
Q Consensus 458 pvq~~~~g~~~ttg~~~~Dy~i~d~~~~p~~~~~~~~e-----~l~~lp~~~~~~~~~~~--~~~~~~~~~~~~~~~~f~ 530 (788)
-..+..+.-.+.-+. ..|++|-.... . ....|.+ +.+.+ |. -|.|-.+ ..........++...++-
T Consensus 103 ~~~l~~iDD~~~~~~-~~D~vin~~~~-~--~~~~y~~~~~~~~~~l~-G~--~Y~~lr~eF~~~~~~~~~~~~~~~iLi 175 (279)
T TIGR03590 103 GRKILVIDDLADRPH-DCDLLLDQNLG-A--DASDYQGLVPANCRLLL-GP--SYALLREEFYQLATANKRRKPLRRVLV 175 (279)
T ss_pred CCeEEEEecCCCCCc-CCCEEEeCCCC-c--CHhHhcccCcCCCeEEe-cc--hHHhhhHHHHHhhHhhhcccccCeEEE
Confidence 224444444433222 67888865332 1 1111221 11111 11 1222100 000000000011223344
Q ss_pred ecC--CCCcCCHHHHHHHHHHHhHcCCcEE-EEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHHHHhcccc
Q 003891 531 SFN--NLAKITPKVLQVWARILCAVPNSRL-VVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLM 607 (788)
Q Consensus 531 ~~~--~~~K~~~~~~~~~~~il~~~p~~~l-~l~~~~~~~~~~~~~l~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~~ 607 (788)
+++ ...+++..+++...++. ++..+ ++.|.+. +..+.+++..+.. .++.+.+.+ .+....+..|
T Consensus 176 ~~GG~d~~~~~~~~l~~l~~~~---~~~~i~vv~G~~~---~~~~~l~~~~~~~----~~i~~~~~~---~~m~~lm~~a 242 (279)
T TIGR03590 176 SFGGADPDNLTLKLLSALAESQ---INISITLVTGSSN---PNLDELKKFAKEY----PNIILFIDV---ENMAELMNEA 242 (279)
T ss_pred EeCCcCCcCHHHHHHHHHhccc---cCceEEEEECCCC---cCHHHHHHHHHhC----CCEEEEeCH---HHHHHHHHHC
Confidence 555 33556677777665532 33333 4555543 2345566655542 478877764 4566777779
Q ss_pred cEeecCCCCCCchhHHHHhhhCCceeecC
Q 003891 608 DISLDTFPYAGTTTTCESLYMGVPCVTMA 636 (788)
Q Consensus 608 Dv~Ld~~~~~g~~t~~eal~~GvPvvt~~ 636 (788)
|+++. .||+|+.|++++|+|+|+++
T Consensus 243 Dl~Is----~~G~T~~E~~a~g~P~i~i~ 267 (279)
T TIGR03590 243 DLAIG----AAGSTSWERCCLGLPSLAIC 267 (279)
T ss_pred CEEEE----CCchHHHHHHHcCCCEEEEE
Confidence 99995 47799999999999999764
No 381
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.23 E-value=0.15 Score=58.84 Aligned_cols=246 Identities=21% Similarity=0.235 Sum_probs=169.9
Q ss_pred hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHCC---
Q 003891 40 TQDGIQKYYEALKIDPHYAPAYYNLGVVYSEL-----MQYDTALGCYEKAALE-----RPMYAEAYCNMGVIYKNRG--- 106 (788)
Q Consensus 40 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~-----g~~~~A~~~~~kal~~-----~p~~~~~~~~la~~~~~~g--- 106 (788)
..+|..+++.+.+. .+..+.+.+|.+|..- .+.+.|+.+|+.+.+. .-.++.+.+.+|.+|.+..
T Consensus 228 ~~~a~~~~~~~a~~--g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~ 305 (552)
T KOG1550|consen 228 LSEAFKYYREAAKL--GHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVE 305 (552)
T ss_pred hhHHHHHHHHHHhh--cchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCc
Confidence 46788888887654 5678888889888754 6899999999999771 1125567889999999853
Q ss_pred --CHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc----
Q 003891 107 --DLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEM---- 180 (788)
Q Consensus 107 --~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~---- 180 (788)
+.+.|..+|.++-+....+ ..+.++.++..-. ...++..|.++|..+.+. .+..+.+.++.+|..-
T Consensus 306 ~~d~~~A~~~~~~aA~~g~~~--a~~~lg~~~~~g~----~~~d~~~A~~yy~~Aa~~--G~~~A~~~la~~y~~G~gv~ 377 (552)
T KOG1550|consen 306 KIDYEKALKLYTKAAELGNPD--AQYLLGVLYETGT----KERDYRRAFEYYSLAAKA--GHILAIYRLALCYELGLGVE 377 (552)
T ss_pred cccHHHHHHHHHHHHhcCCch--HHHHHHHHHHcCC----ccccHHHHHHHHHHHHHc--CChHHHHHHHHHHHhCCCcC
Confidence 7888999999998876543 4455555544322 235788999999999865 4678888888888653
Q ss_pred CChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhhCCCCHH----HHHHHHHHHHH----cCCH
Q 003891 181 LKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDR-DNLDKAVECYQMALSIKPNFSQ----SLNNLGVVYTV----QGKM 251 (788)
Q Consensus 181 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-g~~~eA~~~~~~al~~~p~~~~----~~~~la~~~~~----~g~~ 251 (788)
.+.+.|..+++++.+.. .+.+...++.++... +.+..+...+....+..-..+. .+......... ..+.
T Consensus 378 r~~~~A~~~~k~aA~~g--~~~A~~~~~~~~~~g~~~~~~~~~~~~~~a~~g~~~~q~~a~~l~~~~~~~~~~~~~~~~~ 455 (552)
T KOG1550|consen 378 RNLELAFAYYKKAAEKG--NPSAAYLLGAFYEYGVGRYDTALALYLYLAELGYEVAQSNAAYLLDQSEEDLFSRGVISTL 455 (552)
T ss_pred CCHHHHHHHHHHHHHcc--ChhhHHHHHHHHHHccccccHHHHHHHHHHHhhhhHHhhHHHHHHHhccccccccccccch
Confidence 47899999999999887 455555555554433 7777776666655544322221 11111111111 1255
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHHhhC
Q 003891 252 DAAAEMIEKAIAANPTYAEAYNNLGVLYRDA----GSISLAIDAYEQCLKID 299 (788)
Q Consensus 252 ~eA~~~l~kal~~~p~~~~~~~~la~~~~~~----g~~~eA~~~~~~al~l~ 299 (788)
..+...+.++.. ..+..+...||.+|..- .+++.|...|.++....
T Consensus 456 ~~~~~~~~~a~~--~g~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~ 505 (552)
T KOG1550|consen 456 ERAFSLYSRAAA--QGNADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG 505 (552)
T ss_pred hHHHHHHHHHHh--ccCHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh
Confidence 666666666643 45677888899998765 46999999999998776
No 382
>PLN02555 limonoid glucosyltransferase
Probab=97.23 E-value=0.0052 Score=69.06 Aligned_cols=153 Identities=14% Similarity=0.088 Sum_probs=92.2
Q ss_pred CCeEEEecCCCCcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCH-HHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHHHHh
Q 003891 525 GFITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFCCD-SVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQA 603 (788)
Q Consensus 525 ~~~~f~~~~~~~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~-~~~~~l~~~~~~~gi~~~rv~~~~~~~~~~~~~~~ 603 (788)
..|+|.||++...+.++.+.-.+..+...+...||.+..+.... .....+-+.+.+ .+ .+|+.+.+++| +.+.+ .
T Consensus 277 ~sVvyvsfGS~~~~~~~q~~ela~~l~~~~~~flW~~~~~~~~~~~~~~~lp~~~~~-~~-~~~g~v~~W~P-Q~~iL-~ 352 (480)
T PLN02555 277 SSVVYISFGTVVYLKQEQIDEIAYGVLNSGVSFLWVMRPPHKDSGVEPHVLPEEFLE-KA-GDKGKIVQWCP-QEKVL-A 352 (480)
T ss_pred CceeEEEeccccCCCHHHHHHHHHHHHhcCCeEEEEEecCcccccchhhcCChhhhh-hc-CCceEEEecCC-HHHHh-C
Confidence 45789999999899998888888888888887788765321100 000111111211 12 36788889987 55555 3
Q ss_pred cccccEeecCCCCCCchhHHHHhhhCCceeecCC--CccCccchhHHHh-hhCCccccc--------CCHHHHHHHHHHH
Q 003891 604 YSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAG--SVHAHNVGVSLLT-KVGLKHLIA--------KNEDEYVQLALQL 672 (788)
Q Consensus 604 ~~~~Dv~Ld~~~~~g~~t~~eal~~GvPvvt~~g--~~~~~r~~~~~l~-~~gl~~~ia--------~~~~~y~~~a~~l 672 (788)
...+..|+ ..+|.+|++||+++|||+|+++- +.+ ..+.++. .+|+.--+. -+.++..+...++
T Consensus 353 H~~v~~Fv---tH~G~nS~~Eai~~GVP~l~~P~~~DQ~---~Na~~~~~~~gvGv~l~~~~~~~~~v~~~~v~~~v~~v 426 (480)
T PLN02555 353 HPSVACFV---THCGWNSTMEALSSGVPVVCFPQWGDQV---TDAVYLVDVFKTGVRLCRGEAENKLITREEVAECLLEA 426 (480)
T ss_pred CCccCeEE---ecCCcchHHHHHHcCCCEEeCCCccccH---HHHHHHHHHhCceEEccCCccccCcCcHHHHHHHHHHH
Confidence 45677777 24778899999999999999873 322 2222232 224442221 1456666666666
Q ss_pred hcCHHHHHHHHHHHHH
Q 003891 673 ASDVTALANLRMSLRD 688 (788)
Q Consensus 673 ~~d~~~~~~~r~~~~~ 688 (788)
..+++ -+.+|+++++
T Consensus 427 m~~~~-g~~~r~ra~~ 441 (480)
T PLN02555 427 TVGEK-AAELKQNALK 441 (480)
T ss_pred hcCch-HHHHHHHHHH
Confidence 65532 2445555443
No 383
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=97.20 E-value=0.18 Score=53.28 Aligned_cols=174 Identities=24% Similarity=0.274 Sum_probs=112.5
Q ss_pred HHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----
Q 003891 33 SLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSEL----MQYDTALGCYEKAALERPMYAEAYCNMGVIYKN---- 104 (788)
Q Consensus 33 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~----g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~---- 104 (788)
.....+++..|...+.++-.. ........++.+|... .+..+|..+|+.+. ...++.+.+.+|.+|..
T Consensus 50 ~~~~~~~~~~a~~~~~~a~~~--~~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a--~~g~~~a~~~lg~~~~~G~gv 125 (292)
T COG0790 50 GSAYPPDYAKALKSYEKAAEL--GDAAALALLGQMYGAGKGVSRDKTKAADWYRCAA--ADGLAEALFNLGLMYANGRGV 125 (292)
T ss_pred cccccccHHHHHHHHHHhhhc--CChHHHHHHHHHHHhccCccccHHHHHHHHHHHh--hcccHHHHHhHHHHHhcCCCc
Confidence 334567888999999887662 3347788888888753 46889999999554 45678899999999998
Q ss_pred CCCHHHHHHHHHHHHhhCCCcH-HHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----
Q 003891 105 RGDLESAIACYERCLAVSPNFE-IAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGE---- 179 (788)
Q Consensus 105 ~g~~~~A~~~~~~al~~~p~~~-~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~---- 179 (788)
..+..+|..+|+++.+..-... .....++..+..=........+..+|...|.++.... +..+...+|.+|..
T Consensus 126 ~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~--~~~a~~~lg~~y~~G~Gv 203 (292)
T COG0790 126 PLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG--NPDAQLLLGRMYEKGLGV 203 (292)
T ss_pred ccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc--CHHHHHHHHHHHHcCCCC
Confidence 5599999999999998754432 2244444443331100011113346777777776554 56666666666543
Q ss_pred cCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC
Q 003891 180 MLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRD 215 (788)
Q Consensus 180 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 215 (788)
..++++|...|.++.+... ....+.++ ++...|
T Consensus 204 ~~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g 236 (292)
T COG0790 204 PRDLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNG 236 (292)
T ss_pred CcCHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcC
Confidence 2356677777777666554 55666666 444444
No 384
>PLN02534 UDP-glycosyltransferase
Probab=97.19 E-value=0.004 Score=70.07 Aligned_cols=106 Identities=15% Similarity=0.100 Sum_probs=71.9
Q ss_pred CCCeEEEecCCCCcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHH-HHHHHHcCCCCCcEEEcCCcCCcHHHHH
Q 003891 524 NGFITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRF-LSTLEQLGLESLRVDLLPLILLNHDHMQ 602 (788)
Q Consensus 524 ~~~~~f~~~~~~~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~~~~l-~~~~~~~gi~~~rv~~~~~~~~~~~~~~ 602 (788)
...|+|.||++...+.++-+.-.+.-|...+..-||.+..+...+.....+ -+-|.+. +...++++.+++| +.+.+.
T Consensus 282 ~~sVvyvsfGS~~~~~~~q~~e~a~gl~~~~~~flW~~r~~~~~~~~~~~~~p~gf~~~-~~~~g~~v~~w~p-q~~iL~ 359 (491)
T PLN02534 282 PRSVIYACLGSLCRLVPSQLIELGLGLEASKKPFIWVIKTGEKHSELEEWLVKENFEER-IKGRGLLIKGWAP-QVLILS 359 (491)
T ss_pred CCceEEEEecccccCCHHHHHHHHHHHHhCCCCEEEEEecCccccchhhhcCchhhHHh-hccCCeeccCCCC-HHHHhc
Confidence 356899999999999988877777899999999999986321111111111 0122221 1235677789988 555554
Q ss_pred hcccccE--eecCCCCCCchhHHHHhhhCCceeecCC
Q 003891 603 AYSLMDI--SLDTFPYAGTTTTCESLYMGVPCVTMAG 637 (788)
Q Consensus 603 ~~~~~Dv--~Ld~~~~~g~~t~~eal~~GvPvvt~~g 637 (788)
- .++ |+ ..+|.+|++||+++|||+|+++-
T Consensus 360 h---~~v~~fv---tH~G~ns~~ea~~~GvP~v~~P~ 390 (491)
T PLN02534 360 H---PAIGGFL---THCGWNSTIEGICSGVPMITWPL 390 (491)
T ss_pred C---CccceEE---ecCccHHHHHHHHcCCCEEeccc
Confidence 3 444 55 24788899999999999999985
No 385
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.17 E-value=0.023 Score=57.74 Aligned_cols=137 Identities=15% Similarity=0.075 Sum_probs=96.6
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH-HHHHHHHHHH
Q 003891 167 ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFS-QSLNNLGVVY 245 (788)
Q Consensus 167 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~-~~~~~la~~~ 245 (788)
.+.-+..+.-....|++.+|...+..++...|++..+...++.+|...|+.+.|...+...-....+.. ..+......+
T Consensus 134 ~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll 213 (304)
T COG3118 134 EEEALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELL 213 (304)
T ss_pred HHHHHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHH
Confidence 334455566778889999999999999999999999999999999999999998888766322211111 1111111222
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChh
Q 003891 246 TVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRN 304 (788)
Q Consensus 246 ~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~ 304 (788)
.+.....+. ..+++.+..+|++.++.+.++..+...|+.++|.+.+-..++.+-...+
T Consensus 214 ~qaa~~~~~-~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d 271 (304)
T COG3118 214 EQAAATPEI-QDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFED 271 (304)
T ss_pred HHHhcCCCH-HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccC
Confidence 222222222 3355666779999999999999999999999999999888887665443
No 386
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=97.17 E-value=0.00067 Score=72.79 Aligned_cols=103 Identities=23% Similarity=0.267 Sum_probs=71.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Q 003891 207 LGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSIS 286 (788)
Q Consensus 207 la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~~ 286 (788)
-+.-.+.-+.++.|+..|.++++++|+++..+.+.+..+.+.+++..|+.-+.++++.+|....+|+..|......+++.
T Consensus 10 ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~ 89 (476)
T KOG0376|consen 10 EANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFK 89 (476)
T ss_pred HHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHH
Confidence 34445555667777777777777777777766677777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHHHHhhCCCChhhHHhH
Q 003891 287 LAIDAYEQCLKIDPDSRNAGQNR 309 (788)
Q Consensus 287 eA~~~~~~al~l~p~~~~a~~~~ 309 (788)
+|...|++...+.|+++.+....
T Consensus 90 ~A~~~l~~~~~l~Pnd~~~~r~~ 112 (476)
T KOG0376|consen 90 KALLDLEKVKKLAPNDPDATRKI 112 (476)
T ss_pred HHHHHHHHhhhcCcCcHHHHHHH
Confidence 77777777777777776665443
No 387
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=97.13 E-value=0.12 Score=54.45 Aligned_cols=129 Identities=27% Similarity=0.326 Sum_probs=74.0
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHcC-------
Q 003891 148 DINQGVAYYKKALYYNWHYADAMYNLGVAYGE----MLKFDMAIVFYELAFHFNPHC-AEACNNLGVIYKDRD------- 215 (788)
Q Consensus 148 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g------- 215 (788)
+..+|..+|+.+. ....+.+.+.+|.+|.. ..+..+|..+|+++.+..... ..+.+.++.+|..-.
T Consensus 92 ~~~~A~~~~~~~a--~~g~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~ 169 (292)
T COG0790 92 DKTKAADWYRCAA--ADGLAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAY 169 (292)
T ss_pred cHHHHHHHHHHHh--hcccHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccH
Confidence 3455555555222 23344455555555544 235555555555555543322 233555555554431
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 003891 216 NLDKAVECYQMALSIKPNFSQSLNNLGVVYTV----QGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAG 283 (788)
Q Consensus 216 ~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g 283 (788)
+...|...|.++.... ++.+...+|.+|.. ..++++|..+|+++-+... ....+.++ ++...|
T Consensus 170 ~~~~A~~~~~~aa~~~--~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g 236 (292)
T COG0790 170 DDKKALYLYRKAAELG--NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNG 236 (292)
T ss_pred HHHhHHHHHHHHHHhc--CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcC
Confidence 2236777777776554 66777777877754 3478888888888877765 67777777 555555
No 388
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=97.07 E-value=0.0012 Score=44.38 Aligned_cols=32 Identities=44% Similarity=0.803 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCC
Q 003891 93 EAYCNMGVIYKNRGDLESAIACYERCLAVSPN 124 (788)
Q Consensus 93 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 124 (788)
.+|+++|.+|..+|++++|+.+|+++++++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 34455555555555555555555555555544
No 389
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=97.05 E-value=0.17 Score=54.90 Aligned_cols=238 Identities=12% Similarity=0.063 Sum_probs=140.2
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHH--HHHHHHHHHhhhh
Q 003891 65 GVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAK--NNMAIALTDLGTK 142 (788)
Q Consensus 65 g~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~--~~la~~l~~lg~~ 142 (788)
+.+...+|+++.-.++.... ..+..+..+..+......++++++..+.+++...--+..... ......|-.+..
T Consensus 5 ~eaaWrl~~Wd~l~~~~~~~---~~~~~~~~~~~al~~l~~~~~~~~~~~i~~~r~~~~~~l~~~~~~s~~~~y~~l~~- 80 (352)
T PF02259_consen 5 AEAAWRLGDWDLLEEYLSQS---NEDSPEYSFYRALLALRQGDYDEAKKYIEKARQLLLDELSALSSESYQRAYPSLVK- 80 (352)
T ss_pred HHHHHhcCChhhHHHHHhhc---cCCChhHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH-
Confidence 56778899999833333322 122345666667777799999999999988876522111000 000111111100
Q ss_pred hhhcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCChHHHH--HHHHHHHh----cCCCCHHHHHHHHHHHH
Q 003891 143 VKLEGDINQGVAYYKKALYYNWHY----ADAMYNLGVAYGEMLKFDMAI--VFYELAFH----FNPHCAEACNNLGVIYK 212 (788)
Q Consensus 143 ~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~--~~~~~al~----~~p~~~~~~~~la~~~~ 212 (788)
.....+.+++..+....... +.. ...|...- -....+++--. -.++..+- ........+...+.+..
T Consensus 81 lq~L~Elee~~~~~~~~~~~-~~~~~~l~~~W~~Rl--~~~~~~~~~~~~il~~R~~~l~~~~~~~~~~~~~l~~a~~aR 157 (352)
T PF02259_consen 81 LQQLVELEEIIELKSNLSQN-PQDLKSLLKRWRSRL--PNMQDDFSVWEPILSLRRLVLSLILLPEELAETWLKFAKLAR 157 (352)
T ss_pred HhHHHHHHHHHHHHHhhccc-HHHHHHHHHHHHHHH--HHhccchHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHH
Confidence 00112333333333211100 000 00111110 00111111111 11112211 13455778999999999
Q ss_pred HcCCHHHHHHHHHHHHhhCC----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CC-C-------------------
Q 003891 213 DRDNLDKAVECYQMALSIKP----NFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAA-NP-T------------------- 267 (788)
Q Consensus 213 ~~g~~~eA~~~~~~al~~~p----~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~-~p-~------------------- 267 (788)
+.|+++.|...+.++...++ ..+.+....+.++...|+..+|+..++..+.. .. .
T Consensus 158 k~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (352)
T PF02259_consen 158 KAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNAELKSGLLESLEV 237 (352)
T ss_pred HCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHHHHhhcccccccc
Confidence 99999999999999988652 25678888999999999999999999888871 10 0
Q ss_pred -------------CHHHHHHHHHHHHHc------CCHHHHHHHHHHHHhhCCCChhhHHhH
Q 003891 268 -------------YAEAYNNLGVLYRDA------GSISLAIDAYEQCLKIDPDSRNAGQNR 309 (788)
Q Consensus 268 -------------~~~~~~~la~~~~~~------g~~~eA~~~~~~al~l~p~~~~a~~~~ 309 (788)
...++..+|...... +..+++...|+++.+++|+...++...
T Consensus 238 ~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~ 298 (352)
T PF02259_consen 238 ISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSW 298 (352)
T ss_pred ccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHH
Confidence 134566777777777 889999999999999999988876654
No 390
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=96.98 E-value=0.0018 Score=43.36 Aligned_cols=31 Identities=35% Similarity=0.688 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCCC
Q 003891 94 AYCNMGVIYKNRGDLESAIACYERCLAVSPN 124 (788)
Q Consensus 94 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 124 (788)
+++.+|.++..+|++++|+++|+++++++|+
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence 4444555555555555555555555554443
No 391
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=96.93 E-value=0.0041 Score=63.52 Aligned_cols=98 Identities=21% Similarity=0.192 Sum_probs=55.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 003891 205 NNLGVIYKDRDNLDKAVECYQMALSIKPNF----SQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYR 280 (788)
Q Consensus 205 ~~la~~~~~~g~~~eA~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~ 280 (788)
-.-|+-|++.++|..|+.+|.+.|+..-.+ ...|.+.+-+....|+|..|+.-..+++..+|.+..+++.=+.|+.
T Consensus 85 KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc~~ 164 (390)
T KOG0551|consen 85 KEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKCLL 164 (390)
T ss_pred HHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHHHH
Confidence 334555555555666666666655553322 2245555666666666666666666666666666666666666666
Q ss_pred HcCCHHHHHHHHHHHHhhCCCC
Q 003891 281 DAGSISLAIDAYEQCLKIDPDS 302 (788)
Q Consensus 281 ~~g~~~eA~~~~~~al~l~p~~ 302 (788)
.+.++.+|..+.+..++++-+.
T Consensus 165 eLe~~~~a~nw~ee~~~~d~e~ 186 (390)
T KOG0551|consen 165 ELERFAEAVNWCEEGLQIDDEA 186 (390)
T ss_pred HHHHHHHHHHHHhhhhhhhHHH
Confidence 6666666666666555554443
No 392
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=96.91 E-value=0.088 Score=59.00 Aligned_cols=148 Identities=14% Similarity=0.238 Sum_probs=73.2
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHH------HhhCC-CcHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHhCCCC
Q 003891 94 AYCNMGVIYKNRGDLESAIACYERC------LAVSP-NFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHY 166 (788)
Q Consensus 94 ~~~~la~~~~~~g~~~~A~~~~~~a------l~~~p-~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 166 (788)
.|-.-|.+|.+..++++|+++|++. +++.. ..+. .....-...|.-....|+++.|+..|-++--
T Consensus 663 lydkagdlfeki~d~dkale~fkkgdaf~kaielarfafp~---evv~lee~wg~hl~~~~q~daainhfiea~~----- 734 (1636)
T KOG3616|consen 663 LYDKAGDLFEKIHDFDKALECFKKGDAFGKAIELARFAFPE---EVVKLEEAWGDHLEQIGQLDAAINHFIEANC----- 734 (1636)
T ss_pred HHHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhhCcH---HHhhHHHHHhHHHHHHHhHHHHHHHHHHhhh-----
Confidence 4555566777777888888887653 22210 0000 0011112234444556677777777655421
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 003891 167 ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYT 246 (788)
Q Consensus 167 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~ 246 (788)
......+....+++.+|+..++.....+. -...|-.++.-|...|+++.|.++|.++- ....-...|-
T Consensus 735 ---~~kaieaai~akew~kai~ildniqdqk~-~s~yy~~iadhyan~~dfe~ae~lf~e~~--------~~~dai~my~ 802 (1636)
T KOG3616|consen 735 ---LIKAIEAAIGAKEWKKAISILDNIQDQKT-ASGYYGEIADHYANKGDFEIAEELFTEAD--------LFKDAIDMYG 802 (1636)
T ss_pred ---HHHHHHHHhhhhhhhhhHhHHHHhhhhcc-ccccchHHHHHhccchhHHHHHHHHHhcc--------hhHHHHHHHh
Confidence 11222333444566666665554433221 12334455566666666666666665541 1122233455
Q ss_pred HcCCHHHHHHHHHHH
Q 003891 247 VQGKMDAAAEMIEKA 261 (788)
Q Consensus 247 ~~g~~~eA~~~l~ka 261 (788)
+.|+++.|.+.-+++
T Consensus 803 k~~kw~da~kla~e~ 817 (1636)
T KOG3616|consen 803 KAGKWEDAFKLAEEC 817 (1636)
T ss_pred ccccHHHHHHHHHHh
Confidence 556666665555444
No 393
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.91 E-value=0.036 Score=56.33 Aligned_cols=142 Identities=15% Similarity=0.064 Sum_probs=102.2
Q ss_pred hhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHcCCHHHH
Q 003891 142 KVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHC-AEACNNLGVIYKDRDNLDKA 220 (788)
Q Consensus 142 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~eA 220 (788)
-....+++.+|...+..++...|++.++...++.+|...|+.+.|...+...=....+. ..........+.+.....+.
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~ 222 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPEI 222 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCCH
Confidence 34457899999999999999999999999999999999999999988887642222221 11111112233333332222
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCC
Q 003891 221 VECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPT--YAEAYNNLGVLYRDAGS 284 (788)
Q Consensus 221 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~--~~~~~~~la~~~~~~g~ 284 (788)
..+++.+..+|++.++-+.++..+...|+.++|.+.+-..+..+-. +..+...+-.++...|.
T Consensus 223 -~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~ 287 (304)
T COG3118 223 -QDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGP 287 (304)
T ss_pred -HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCC
Confidence 3455667789999999999999999999999999999988887543 34555556666655553
No 394
>PF02350 Epimerase_2: UDP-N-acetylglucosamine 2-epimerase; InterPro: IPR003331 UDP-N-acetylglucosamine 2-epimerase 5.1.3.14 from EC catalyses the production of UDP-ManNAc from UDP-GlcNAc. Some of the enzymes is this family are bifunctional. In microorganisms the epimerase is involved in in the synthesis of the capsule precursor UDP-ManNAcA [, ]. The protein from rat liver displays both epimerase and kinase activity [].; GO: 0008761 UDP-N-acetylglucosamine 2-epimerase activity, 0006047 UDP-N-acetylglucosamine metabolic process, 0009103 lipopolysaccharide biosynthetic process; PDB: 1V4V_B 3BEO_B 3DZC_B 3OT5_B 1O6C_B 1VGV_D 1F6D_C.
Probab=96.91 E-value=0.0086 Score=64.66 Aligned_cols=136 Identities=13% Similarity=0.150 Sum_probs=86.6
Q ss_pred CCCCeEEEecCCCCcCC-H----HHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCc
Q 003891 523 TNGFITFGSFNNLAKIT-P----KVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLN 597 (788)
Q Consensus 523 ~~~~~~f~~~~~~~K~~-~----~~~~~~~~il~~~p~~~l~l~~~~~~~~~~~~~l~~~~~~~gi~~~rv~~~~~~~~~ 597 (788)
..+.+++.++.+..... + .+.++..++... ++..+++...+ .+.....+.+.+.+. +++.+.+..+ .
T Consensus 178 ~~~~~iLvt~H~~t~~~~~~~~~~i~~~l~~L~~~-~~~~vi~~~hn--~p~~~~~i~~~l~~~----~~v~~~~~l~-~ 249 (346)
T PF02350_consen 178 APKPYILVTLHPVTNEDNPERLEQILEALKALAER-QNVPVIFPLHN--NPRGSDIIIEKLKKY----DNVRLIEPLG-Y 249 (346)
T ss_dssp TTSEEEEEE-S-CCCCTHH--HHHHHHHHHHHHHH-TTEEEEEE--S---HHHHHHHHHHHTT-----TTEEEE-----H
T ss_pred cCCCEEEEEeCcchhcCChHHHHHHHHHHHHHHhc-CCCcEEEEecC--CchHHHHHHHHhccc----CCEEEECCCC-H
Confidence 45667788888887777 5 455555555555 67767776542 235667776666655 2999999987 8
Q ss_pred HHHHHhcccccEeecCCCCCCchhHH-HHhhhCCceeecC--CCccCccchhHHHhhhCCcccccCCHHHHHHHHHHHhc
Q 003891 598 HDHMQAYSLMDISLDTFPYAGTTTTC-ESLYMGVPCVTMA--GSVHAHNVGVSLLTKVGLKHLIAKNEDEYVQLALQLAS 674 (788)
Q Consensus 598 ~~~~~~~~~~Dv~Ld~~~~~g~~t~~-eal~~GvPvvt~~--g~~~~~r~~~~~l~~~gl~~~ia~~~~~y~~~a~~l~~ 674 (788)
.+|+..++.|++++ -+.| +.. ||.++|+|||++. |+...+|.. |-.-++..+.++-.+.+.+...
T Consensus 250 ~~~l~ll~~a~~vv----gdSs-GI~eEa~~lg~P~v~iR~~geRqe~r~~-------~~nvlv~~~~~~I~~ai~~~l~ 317 (346)
T PF02350_consen 250 EEYLSLLKNADLVV----GDSS-GIQEEAPSLGKPVVNIRDSGERQEGRER-------GSNVLVGTDPEAIIQAIEKALS 317 (346)
T ss_dssp HHHHHHHHHESEEE----ESSH-HHHHHGGGGT--EEECSSS-S-HHHHHT-------TSEEEETSSHHHHHHHHHHHHH
T ss_pred HHHHHHHhcceEEE----EcCc-cHHHHHHHhCCeEEEecCCCCCHHHHhh-------cceEEeCCCHHHHHHHHHHHHh
Confidence 99999999999998 6666 888 9999999999984 444444443 5555666777777777777776
Q ss_pred CHHH
Q 003891 675 DVTA 678 (788)
Q Consensus 675 d~~~ 678 (788)
+.+.
T Consensus 318 ~~~~ 321 (346)
T PF02350_consen 318 DKDF 321 (346)
T ss_dssp -HHH
T ss_pred ChHH
Confidence 6433
No 395
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.90 E-value=0.025 Score=52.78 Aligned_cols=94 Identities=23% Similarity=0.216 Sum_probs=73.5
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHhCCCC----------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003891 28 TDLGTSLKLAGNTQDGIQKYYEALKIDPHY----------------------APAYYNLGVVYSELMQYDTALGCYEKAA 85 (788)
Q Consensus 28 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~----------------------~~~~~~lg~~~~~~g~~~~A~~~~~kal 85 (788)
...|......++...++..+++++.+.... ..+...++..+...|++++|+..+++++
T Consensus 10 ~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~l 89 (146)
T PF03704_consen 10 VREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQRAL 89 (146)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 344555667789999999999999873221 3355667788889999999999999999
Q ss_pred HhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh
Q 003891 86 LERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAV 121 (788)
Q Consensus 86 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 121 (788)
..+|.+..++..+..+|...|+..+|++.|++..+.
T Consensus 90 ~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~ 125 (146)
T PF03704_consen 90 ALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRR 125 (146)
T ss_dssp HHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred hcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999887543
No 396
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.87 E-value=0.031 Score=52.18 Aligned_cols=62 Identities=24% Similarity=0.360 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 003891 236 QSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLK 297 (788)
Q Consensus 236 ~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~ 297 (788)
.+...++..+...|++++|+..+++++..+|.+..++..+..+|...|+..+|++.|+++.+
T Consensus 63 ~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 63 DALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 35667778888899999999999999999999999999999999999999999999988754
No 397
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.84 E-value=0.061 Score=51.31 Aligned_cols=117 Identities=24% Similarity=0.144 Sum_probs=86.1
Q ss_pred HHHHHHHHHHhcCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHH
Q 003891 185 MAIVFYELAFHFNPHCA---EACNNLGVIYKDRDNLDKAVECYQMALSIKPNF---SQSLNNLGVVYTVQGKMDAAAEMI 258 (788)
Q Consensus 185 ~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~eA~~~l 258 (788)
+.....++....++... .+...++..+...+++++|+..++.++....+. .-+-.+++.+...+|++++|+..+
T Consensus 70 ~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L 149 (207)
T COG2976 70 KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTL 149 (207)
T ss_pred hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 44444555555554443 345667888999999999999999998654433 236678999999999999999988
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 003891 259 EKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDS 302 (788)
Q Consensus 259 ~kal~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~ 302 (788)
....... =.+..-...|.++...|+.++|+..|+++++..++.
T Consensus 150 ~t~~~~~-w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~ 192 (207)
T COG2976 150 DTIKEES-WAAIVAELRGDILLAKGDKQEARAAYEKALESDASP 192 (207)
T ss_pred hcccccc-HHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCCh
Confidence 7653211 012335568999999999999999999999987543
No 398
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.82 E-value=0.12 Score=60.26 Aligned_cols=225 Identities=13% Similarity=0.114 Sum_probs=135.2
Q ss_pred HcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Q 003891 36 LAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACY 115 (788)
Q Consensus 36 ~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 115 (788)
.-++.+.|.++.++. +.+..|..+|....+.|...+|++.|-++ +++..|.....+..+.|.|++-++++
T Consensus 1087 ~i~~ldRA~efAe~~-----n~p~vWsqlakAQL~~~~v~dAieSyika-----dDps~y~eVi~~a~~~~~~edLv~yL 1156 (1666)
T KOG0985|consen 1087 NIGSLDRAYEFAERC-----NEPAVWSQLAKAQLQGGLVKDAIESYIKA-----DDPSNYLEVIDVASRTGKYEDLVKYL 1156 (1666)
T ss_pred HhhhHHHHHHHHHhh-----CChHHHHHHHHHHHhcCchHHHHHHHHhc-----CCcHHHHHHHHHHHhcCcHHHHHHHH
Confidence 346777777776664 55789999999999999999999988775 56778888888889999999999998
Q ss_pred HHHHhhCCCcHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 003891 116 ERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFH 195 (788)
Q Consensus 116 ~~al~~~p~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 195 (788)
.-+-+...+.. .-..+..+|.. .++..+-.+.. ..|+.+. ....|.-++..|.|+.|.-+|..
T Consensus 1157 ~MaRkk~~E~~-id~eLi~AyAk-------t~rl~elE~fi-----~gpN~A~-i~~vGdrcf~~~~y~aAkl~y~~--- 1219 (1666)
T KOG0985|consen 1157 LMARKKVREPY-IDSELIFAYAK-------TNRLTELEEFI-----AGPNVAN-IQQVGDRCFEEKMYEAAKLLYSN--- 1219 (1666)
T ss_pred HHHHHhhcCcc-chHHHHHHHHH-------hchHHHHHHHh-----cCCCchh-HHHHhHHHhhhhhhHHHHHHHHH---
Confidence 88776543321 11112222222 22332222211 1222222 23344444455555555444432
Q ss_pred cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC---------------------C----CCHHHHHHHHHHHHHcCC
Q 003891 196 FNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIK---------------------P----NFSQSLNNLGVVYTVQGK 250 (788)
Q Consensus 196 ~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~---------------------p----~~~~~~~~la~~~~~~g~ 250 (788)
..-|..++..+..+|+|..|...-++|-... . -+++-+-.+...|...|-
T Consensus 1220 -----vSN~a~La~TLV~LgeyQ~AVD~aRKAns~ktWK~VcfaCvd~~EFrlAQiCGL~iivhadeLeeli~~Yq~rGy 1294 (1666)
T KOG0985|consen 1220 -----VSNFAKLASTLVYLGEYQGAVDAARKANSTKTWKEVCFACVDKEEFRLAQICGLNIIVHADELEELIEYYQDRGY 1294 (1666)
T ss_pred -----hhhHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHhchhhhhHHHhcCceEEEehHhHHHHHHHHHhcCc
Confidence 2233444444555555555554444432210 0 113345566777888899
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 003891 251 MDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYE 293 (788)
Q Consensus 251 ~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~ 293 (788)
+++-+..++.++.+...+...+..||.+|.+-+ +++-.++++
T Consensus 1295 FeElIsl~Ea~LGLERAHMgmfTELaiLYskyk-p~km~EHl~ 1336 (1666)
T KOG0985|consen 1295 FEELISLLEAGLGLERAHMGMFTELAILYSKYK-PEKMMEHLK 1336 (1666)
T ss_pred HHHHHHHHHhhhchhHHHHHHHHHHHHHHHhcC-HHHHHHHHH
Confidence 999999999888887777777778887776543 444444444
No 399
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.77 E-value=0.0017 Score=66.70 Aligned_cols=97 Identities=18% Similarity=0.162 Sum_probs=89.9
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC
Q 003891 28 TDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGD 107 (788)
Q Consensus 28 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g~ 107 (788)
...+...+..|.+++|++.|..+++++|..+..+...+.++.++++...|+.-+..+++++|+....|-..+.....+|+
T Consensus 118 k~~A~eAln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~ 197 (377)
T KOG1308|consen 118 KVQASEALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGN 197 (377)
T ss_pred HHHHHHHhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhc
Confidence 33455667889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhCCC
Q 003891 108 LESAIACYERCLAVSPN 124 (788)
Q Consensus 108 ~~~A~~~~~~al~~~p~ 124 (788)
+++|...+..+.+++-+
T Consensus 198 ~e~aa~dl~~a~kld~d 214 (377)
T KOG1308|consen 198 WEEAAHDLALACKLDYD 214 (377)
T ss_pred hHHHHHHHHHHHhcccc
Confidence 99999999999988654
No 400
>TIGR00661 MJ1255 conserved hypothetical protein. This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases.
Probab=96.74 E-value=0.013 Score=62.75 Aligned_cols=69 Identities=12% Similarity=0.198 Sum_probs=52.9
Q ss_pred CcEEEcCCcCCcHHHHHhcccccEeecCCCCCCchhHHHHhhhCCceeecCCCc-cCccchhHHHhhhCCccccc
Q 003891 586 LRVDLLPLILLNHDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSV-HAHNVGVSLLTKVGLKHLIA 659 (788)
Q Consensus 586 ~rv~~~~~~~~~~~~~~~~~~~Dv~Ld~~~~~g~~t~~eal~~GvPvvt~~g~~-~~~r~~~~~l~~~gl~~~ia 659 (788)
+++.+.+..+ +++...+..||+++.. +|.+|++||+++|+|+|..+-.. +.....+..+...|+...+-
T Consensus 229 ~~v~~~~~~~--~~~~~~l~~ad~vI~~---~G~~t~~Ea~~~g~P~l~ip~~~~~eQ~~na~~l~~~g~~~~l~ 298 (321)
T TIGR00661 229 ENVEIRRITT--DNFKELIKNAELVITH---GGFSLISEALSLGKPLIVIPDLGQFEQGNNAVKLEDLGCGIALE 298 (321)
T ss_pred CCEEEEECCh--HHHHHHHHhCCEEEEC---CChHHHHHHHHcCCCEEEEcCCCcccHHHHHHHHHHCCCEEEcC
Confidence 6788887754 5677888889999942 56678999999999999988643 34556777888888875553
No 401
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=96.70 E-value=0.12 Score=55.29 Aligned_cols=148 Identities=15% Similarity=0.082 Sum_probs=117.6
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCC------------hHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHH
Q 003891 154 AYYKKALYYNWHYADAMYNLGVAYGEMLK------------FDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAV 221 (788)
Q Consensus 154 ~~~~~al~~~p~~~~~~~~la~~~~~~g~------------~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~ 221 (788)
.-+++.++.+|.+.++|..+.......-. .+.-+.+|++|++.+|++...+..+-.+..+..+.++..
T Consensus 6 ~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~ 85 (321)
T PF08424_consen 6 AELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLA 85 (321)
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHH
Confidence 45778888999999999988776654432 456788999999999999999999988999999999999
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHhCC----C--------------CHHHHHHHHHHHH
Q 003891 222 ECYQMALSIKPNFSQSLNNLGVVYTV---QGKMDAAAEMIEKAIAANP----T--------------YAEAYNNLGVLYR 280 (788)
Q Consensus 222 ~~~~~al~~~p~~~~~~~~la~~~~~---~g~~~eA~~~l~kal~~~p----~--------------~~~~~~~la~~~~ 280 (788)
+-+++++..+|++...|..+-..... .-.+++....|.+++..-. . ...++..+.....
T Consensus 86 ~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~ 165 (321)
T PF08424_consen 86 KKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLR 165 (321)
T ss_pred HHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHH
Confidence 99999999999999888766554433 3457788888888876411 0 1345667888889
Q ss_pred HcCCHHHHHHHHHHHHhhCCC
Q 003891 281 DAGSISLAIDAYEQCLKIDPD 301 (788)
Q Consensus 281 ~~g~~~eA~~~~~~al~l~p~ 301 (788)
+.|..+.|+..++-.++++=-
T Consensus 166 ~aG~~E~Ava~~Qa~lE~n~~ 186 (321)
T PF08424_consen 166 QAGYTERAVALWQALLEFNFF 186 (321)
T ss_pred HCCchHHHHHHHHHHHHHHcC
Confidence 999999999999999988543
No 402
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=96.68 E-value=0.0029 Score=42.47 Aligned_cols=32 Identities=41% Similarity=0.817 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 003891 270 EAYNNLGVLYRDAGSISLAIDAYEQCLKIDPD 301 (788)
Q Consensus 270 ~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~ 301 (788)
.+++.+|.+|..+|++++|.++|+++++++|+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 45677777777777777777777777777764
No 403
>PRK02797 4-alpha-L-fucosyltransferase; Provisional
Probab=96.58 E-value=0.061 Score=55.39 Aligned_cols=168 Identities=17% Similarity=0.126 Sum_probs=101.8
Q ss_pred CCeEEEecC--CCCcCCHHHHHHHHHHHhHcCCcEEEE-ecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHHH
Q 003891 525 GFITFGSFN--NLAKITPKVLQVWARILCAVPNSRLVV-KCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHM 601 (788)
Q Consensus 525 ~~~~f~~~~--~~~K~~~~~~~~~~~il~~~p~~~l~l-~~~~~~~~~~~~~l~~~~~~~gi~~~rv~~~~~~~~~~~~~ 601 (788)
+.+|+-.-| .+.-.|-+.++...+.. ..+.++++ +|-|.+++..++++++...++.-. +++..+.....-++|+
T Consensus 145 ~~~tIlvGNSgd~SN~Hie~L~~l~~~~--~~~v~ii~PlsYp~gn~~Yi~~V~~~~~~lF~~-~~~~~L~e~l~f~eYl 221 (322)
T PRK02797 145 GKMTILVGNSGDRSNRHIEALRALHQQF--GDNVKIIVPMGYPANNQAYIEEVRQAGLALFGA-ENFQILTEKLPFDDYL 221 (322)
T ss_pred CceEEEEeCCCCCcccHHHHHHHHHHHh--CCCeEEEEECCcCCCCHHHHHHHHHHHHHhcCc-ccEEehhhhCCHHHHH
Confidence 445554433 44444445555444433 34555555 344446778888998888887653 6776655544479999
Q ss_pred HhcccccEeecCCCC-CCchhHHHHhhhCCceeecCCCccCccchhHHHhhhCCcccccCCHHHHHHHHHHHhcCHHHHH
Q 003891 602 QAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIAKNEDEYVQLALQLASDVTALA 680 (788)
Q Consensus 602 ~~~~~~Dv~Ld~~~~-~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l~~~gl~~~ia~~~~~y~~~a~~l~~d~~~~~ 680 (788)
+.++.||+..--|.= -|--|+|=.+.+|+||+.....++ -..|...|++=+... +.. |.....
T Consensus 222 ~lL~~~Dl~~f~~~RQQgiGnl~lLi~~G~~v~l~r~n~f-----wqdl~e~gv~Vlf~~--d~L---------~~~~v~ 285 (322)
T PRK02797 222 ALLRQCDLGYFIFARQQGIGTLCLLIQLGKPVVLSRDNPF-----WQDLTEQGLPVLFTG--DDL---------DEDIVR 285 (322)
T ss_pred HHHHhCCEEEEeechhhHHhHHHHHHHCCCcEEEecCCch-----HHHHHhCCCeEEecC--Ccc---------cHHHHH
Confidence 999999999977755 444588899999999997433222 345778888865322 211 322223
Q ss_pred HHHHHHHHHhhcCCCCChHHHHHHHHHHHHH
Q 003891 681 NLRMSLRDLMSKSPVCDGQNFALGLESTYRN 711 (788)
Q Consensus 681 ~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~~ 711 (788)
+.++++...-.+.-.|..+.++..+.++|..
T Consensus 286 e~~rql~~~dk~~I~Ff~pn~~~~W~~~l~~ 316 (322)
T PRK02797 286 EAQRQLASVDKNIIAFFSPNYLQGWRNALAI 316 (322)
T ss_pred HHHHHHHhhCcceeeecCHhHHHHHHHHHHH
Confidence 3333333222222237777877777776654
No 404
>PF02684 LpxB: Lipid-A-disaccharide synthetase; InterPro: IPR003835 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. These enzymes belong to the glycosyltransferase family 19 GT19 from CAZY. Lipid-A-disaccharide synthetase 2.4.1.182 from EC is involved with acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase 2.3.1.129 from EC and tetraacyldisaccharide 4'-kinase 2.7.1.130 from EC in the biosynthesis of the phosphorylated glycolipid, lipid A, in the outer membrane of Escherichia coli and other bacteria. These enzymes catalyse the first disaccharide step in the synthesis of lipid-A-disaccharide.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process
Probab=96.55 E-value=0.02 Score=61.83 Aligned_cols=136 Identities=18% Similarity=0.226 Sum_probs=88.0
Q ss_pred CcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHHHHhcccccEeecCCC
Q 003891 536 AKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFP 615 (788)
Q Consensus 536 ~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~~~~l~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~~Dv~Ld~~~ 615 (788)
.++.|.++++..++.+..|+.++++-..+ ....+.+.+.+...+... .+.+.. .+-...++.||+.|
T Consensus 199 ~rllP~~l~aa~~l~~~~p~l~fvvp~a~---~~~~~~i~~~~~~~~~~~-~~~~~~-----~~~~~~m~~ad~al---- 265 (373)
T PF02684_consen 199 KRLLPIFLEAAKLLKKQRPDLQFVVPVAP---EVHEELIEEILAEYPPDV-SIVIIE-----GESYDAMAAADAAL---- 265 (373)
T ss_pred HHHHHHHHHHHHHHHHhCCCeEEEEecCC---HHHHHHHHHHHHhhCCCC-eEEEcC-----CchHHHHHhCcchh----
Confidence 56679999999999999999999986543 223334555666665543 233221 12344556699998
Q ss_pred CCCchhHHHHhhhCCceeecCCCccCccchhHHHh------hhCCcc----------ccc--CCHHHHHHHHHHHhcCHH
Q 003891 616 YAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLT------KVGLKH----------LIA--KNEDEYVQLALQLASDVT 677 (788)
Q Consensus 616 ~~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l~------~~gl~~----------~ia--~~~~~y~~~a~~l~~d~~ 677 (788)
-..||.|+|+..+|+|.|...-- +..+.-+.+ .+||+. ++- -+++...+.+..+..|++
T Consensus 266 ~~SGTaTLE~Al~g~P~Vv~Yk~---~~lt~~iak~lvk~~~isL~Niia~~~v~PEliQ~~~~~~~i~~~~~~ll~~~~ 342 (373)
T PF02684_consen 266 AASGTATLEAALLGVPMVVAYKV---SPLTYFIAKRLVKVKYISLPNIIAGREVVPELIQEDATPENIAAELLELLENPE 342 (373)
T ss_pred hcCCHHHHHHHHhCCCEEEEEcC---cHHHHHHHHHhhcCCEeechhhhcCCCcchhhhcccCCHHHHHHHHHHHhcCHH
Confidence 67899999999999997765432 222222222 235554 442 368888888889999987
Q ss_pred HHHHHHHHHH
Q 003891 678 ALANLRMSLR 687 (788)
Q Consensus 678 ~~~~~r~~~~ 687 (788)
.+.......+
T Consensus 343 ~~~~~~~~~~ 352 (373)
T PF02684_consen 343 KRKKQKELFR 352 (373)
T ss_pred HHHHHHHHHH
Confidence 7555444443
No 405
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=96.55 E-value=1.9 Score=48.33 Aligned_cols=169 Identities=13% Similarity=0.030 Sum_probs=134.6
Q ss_pred hhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHcCCHHHHH
Q 003891 143 VKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHF-NPHCAEACNNLGVIYKDRDNLDKAV 221 (788)
Q Consensus 143 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~la~~~~~~g~~~eA~ 221 (788)
....|+++...-.|++++--...+.+.|...+......|+.+-|...+..+.+. .|+.+.+...-+.+-...|++..|.
T Consensus 307 ~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~~~n~~~A~ 386 (577)
T KOG1258|consen 307 EITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFEESNGNFDDAK 386 (577)
T ss_pred hhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHhhccHHHHH
Confidence 345789999999999999888888999999999999999999999999998887 4667788888888888999999999
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHH---HHHHHHHhCCCC---HHHHHHHHHH-HHHcCCHHHHHHHHHH
Q 003891 222 ECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAE---MIEKAIAANPTY---AEAYNNLGVL-YRDAGSISLAIDAYEQ 294 (788)
Q Consensus 222 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~---~l~kal~~~p~~---~~~~~~la~~-~~~~g~~~eA~~~~~~ 294 (788)
..+++..+..|...++-...+.....+|+.+.+.. ++.....-..+. ...+...+.. +.-.++.+.|...+.+
T Consensus 387 ~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~ 466 (577)
T KOG1258|consen 387 VILQRIESEYPGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYKIREDADLARIILLE 466 (577)
T ss_pred HHHHHHHhhCCchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 99999999889988888888888899999998884 333222211111 2334444444 3446789999999999
Q ss_pred HHhhCCCChhhHHhHHH
Q 003891 295 CLKIDPDSRNAGQNRLL 311 (788)
Q Consensus 295 al~l~p~~~~a~~~~ll 311 (788)
+++..|++...+..+.-
T Consensus 467 ~~~~~~~~k~~~~~~~~ 483 (577)
T KOG1258|consen 467 ANDILPDCKVLYLELIR 483 (577)
T ss_pred hhhcCCccHHHHHHHHH
Confidence 99999998877665443
No 406
>TIGR02094 more_P_ylases alpha-glucan phosphorylases. This family consists of known phosphorylases, and homologs believed to share the function of using inorganic phosphate to cleave an alpha 1,4 linkage between the terminal glucose residue and the rest of the polymer (maltodextrin, glycogen, etc.). The name of the glucose storage polymer substrate, and therefore the name of this enzyme, depends on the chain lengths and branching patterns. A number of the members of this family have been shown to operate on small maltodextrins, as may be obtained by utilization of exogenous sources. This family represents a distinct clade from the related family modeled by TIGR02093/PF00343.
Probab=96.53 E-value=0.087 Score=60.89 Aligned_cols=171 Identities=13% Similarity=0.124 Sum_probs=105.4
Q ss_pred CCeEEEecCCC--CcCCHHHHHHHHHHHh--Hc--CCcEEEEecCCCCCHH----HHHHHHHHHHHcCCCCCcEEEcCCc
Q 003891 525 GFITFGSFNNL--AKITPKVLQVWARILC--AV--PNSRLVVKCKPFCCDS----VRHRFLSTLEQLGLESLRVDLLPLI 594 (788)
Q Consensus 525 ~~~~f~~~~~~--~K~~~~~~~~~~~il~--~~--p~~~l~l~~~~~~~~~----~~~~l~~~~~~~gi~~~rv~~~~~~ 594 (788)
+.+++|...|+ +|..+-++....++++ .. ...++++.|++...+. ....+....++-.+ ++||+|+..-
T Consensus 388 d~~~ig~v~Rl~~yKr~dLil~~i~~l~~i~~~~~~pvq~V~~Gka~p~d~~gk~~i~~i~~la~~~~~-~~kv~f~~~Y 466 (601)
T TIGR02094 388 DVLTIGFARRFATYKRADLIFRDLERLARILNNPERPVQIVFAGKAHPADGEGKEIIQRIVEFSKRPEF-RGRIVFLENY 466 (601)
T ss_pred CCcEEEEEEcchhhhhHHHHHHHHHHHHHHhhCCCCCeEEEEEEecCcccchHHHHHHHHHHHHhcccC-CCCEEEEcCC
Confidence 45678888887 9998888888777765 21 3578888887743222 33444443333223 4799997653
Q ss_pred CCcHHHH--HhcccccEeec-CCC-C-CCchhHHHHhhhCCceeecCCCccCccchhHHHhhhCCcccc-----------
Q 003891 595 LLNHDHM--QAYSLMDISLD-TFP-Y-AGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLI----------- 658 (788)
Q Consensus 595 ~~~~~~~--~~~~~~Dv~Ld-~~~-~-~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l~~~gl~~~i----------- 658 (788)
..-+ ..+..+||+|- |+. + ..||+-+=||.-|.+.+|....-...-.. |-.+|.
T Consensus 467 ---d~~lA~~i~aG~Dv~L~~Psr~~EacGtsqMka~~nGgL~~sv~DG~~~E~~~-------~~nGf~f~~~~~~~~~~ 536 (601)
T TIGR02094 467 ---DINLARYLVSGVDVWLNNPRRPLEASGTSGMKAAMNGVLNLSILDGWWGEGYD-------GDNGWAIGDGEEYDDEE 536 (601)
T ss_pred ---CHHHHHHHhhhheeEEeCCCCCcCCchHHHHHHHHcCCceeecccCcccccCC-------CCcEEEECCCccccccc
Confidence 3333 35789999999 774 8 78999999999999999865421111000 112221
Q ss_pred ---cCCHHHHHHH---HH-HHhcC-H------HHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHH
Q 003891 659 ---AKNEDEYVQL---AL-QLASD-V------TALANLRMSLRDLMSKSPVCDGQNFALGLESTY 709 (788)
Q Consensus 659 ---a~~~~~y~~~---a~-~l~~d-~------~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~ 709 (788)
..|.+++.+. ++ .+-.+ + .+.+.+|+.++. ..|.|++.+++++..+.|
T Consensus 537 ~~d~~da~~l~~~L~~ai~~~yy~~~~~~~p~~W~~~~k~am~~---~~~~fsw~r~a~~Y~~~y 598 (601)
T TIGR02094 537 EQDRLDAEALYDLLENEVIPLYYDRDEKGIPADWVEMMKESIAT---IAPRFSTNRMVREYVDKF 598 (601)
T ss_pred cccCCCHHHHHHHHHHHHHHHHhcCCcccCcHHHHHHHHHHHhc---cCCCCCHHHHHHHHHHHh
Confidence 1345554443 34 43433 2 244444444432 246799999999988876
No 407
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.50 E-value=0.0026 Score=65.28 Aligned_cols=89 Identities=25% Similarity=0.291 Sum_probs=64.5
Q ss_pred HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 003891 213 DRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAY 292 (788)
Q Consensus 213 ~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~~eA~~~~ 292 (788)
..|.+++|++.|..++.++|.....+...+.++.++++...|+.-+..+++++|+...-|-..+.....+|++++|...+
T Consensus 126 n~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl 205 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHDL 205 (377)
T ss_pred cCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHHH
Confidence 44667777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHhhCCC
Q 003891 293 EQCLKIDPD 301 (788)
Q Consensus 293 ~~al~l~p~ 301 (788)
..+.+++-+
T Consensus 206 ~~a~kld~d 214 (377)
T KOG1308|consen 206 ALACKLDYD 214 (377)
T ss_pred HHHHhcccc
Confidence 777776544
No 408
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.46 E-value=0.12 Score=49.45 Aligned_cols=99 Identities=23% Similarity=0.147 Sum_probs=79.0
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 003891 27 LTDLGTSLKLAGNTQDGIQKYYEALKIDPHY---APAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYK 103 (788)
Q Consensus 27 l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~ 103 (788)
...++..+...+++++|+..++.++....+. .-+-.+++.+...+|++++|+..+...... .-.+..-...|.++.
T Consensus 92 aL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~-~w~~~~~elrGDill 170 (207)
T COG2976 92 ALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEE-SWAAIVAELRGDILL 170 (207)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccc-cHHHHHHHHhhhHHH
Confidence 4567888999999999999999998654332 345688999999999999999988765321 112345667899999
Q ss_pred HCCCHHHHHHHHHHHHhhCCCcH
Q 003891 104 NRGDLESAIACYERCLAVSPNFE 126 (788)
Q Consensus 104 ~~g~~~~A~~~~~~al~~~p~~~ 126 (788)
..|+-++|...|+++++..++..
T Consensus 171 ~kg~k~~Ar~ay~kAl~~~~s~~ 193 (207)
T COG2976 171 AKGDKQEARAAYEKALESDASPA 193 (207)
T ss_pred HcCchHHHHHHHHHHHHccCChH
Confidence 99999999999999999875543
No 409
>KOG2941 consensus Beta-1,4-mannosyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=96.41 E-value=0.027 Score=57.96 Aligned_cols=125 Identities=17% Similarity=0.263 Sum_probs=97.2
Q ss_pred cCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHHHHhcccccEe--ecCCCCCC--chhHHHHhhh
Q 003891 553 VPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDIS--LDTFPYAG--TTTTCESLYM 628 (788)
Q Consensus 553 ~p~~~l~l~~~~~~~~~~~~~l~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~~Dv~--Ld~~~~~g--~~t~~eal~~ 628 (788)
.|+...++-|+| +.++...+...++....=+| .+++.. -++|...+..||+- |.|+..|= .+-++|..-+
T Consensus 291 lP~llciITGKG----PlkE~Y~~~I~~~~~~~v~~-~tpWL~-aEDYP~ll~saDlGVcLHtSSSGLDLPMKVVDMFGc 364 (444)
T KOG2941|consen 291 LPSLLCIITGKG----PLKEKYSQEIHEKNLQHVQV-CTPWLE-AEDYPKLLASADLGVCLHTSSSGLDLPMKVVDMFGC 364 (444)
T ss_pred CCcEEEEEcCCC----chhHHHHHHHHHhcccceee-eecccc-cccchhHhhccccceEeeecCcccCcchhHHHhhcC
Confidence 477667777887 89999999999988863233 356766 68999999999965 55544432 4578999999
Q ss_pred CCceeecCCCccCccchhHHHhhhCCcccccCCHHHHHHHHHHHhc----CHHHHHHHHHHHHHH
Q 003891 629 GVPCVTMAGSVHAHNVGVSLLTKVGLKHLIAKNEDEYVQLALQLAS----DVTALANLRMSLRDL 689 (788)
Q Consensus 629 GvPvvt~~g~~~~~r~~~~~l~~~gl~~~ia~~~~~y~~~a~~l~~----d~~~~~~~r~~~~~~ 689 (788)
|+||+++.=.+... |-.-|-++++-.|.++..+...-|-+ +...+.++++++++.
T Consensus 365 glPvcA~~fkcl~E------LVkh~eNGlvF~Ds~eLa~ql~~lf~~fp~~a~~l~~lkkn~~e~ 423 (444)
T KOG2941|consen 365 GLPVCAVNFKCLDE------LVKHGENGLVFEDSEELAEQLQMLFKNFPDNADELNQLKKNLREE 423 (444)
T ss_pred CCceeeecchhHHH------HHhcCCCceEeccHHHHHHHHHHHHhcCCCCHHHHHHHHHhhHHH
Confidence 99999876554443 33448889999999999999998888 899999999999876
No 410
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=96.40 E-value=0.14 Score=55.41 Aligned_cols=107 Identities=14% Similarity=0.063 Sum_probs=73.8
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------------CC------------CC---HHHHHHHH
Q 003891 49 EALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALE--------------RP------------MY---AEAYCNMG 99 (788)
Q Consensus 49 ~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~--------------~p------------~~---~~~~~~la 99 (788)
..++.+|-+.+++..++.++..+|+++.|.+++++|+-. ++ .| ..+++...
T Consensus 31 ~ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i 110 (360)
T PF04910_consen 31 NLLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYI 110 (360)
T ss_pred HHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHH
Confidence 345679999999999999999999999999999998631 11 11 23556667
Q ss_pred HHHHHCCCHHHHHHHHHHHHhhCCC-cHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHH
Q 003891 100 VIYKNRGDLESAIACYERCLAVSPN-FEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALY 161 (788)
Q Consensus 100 ~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~ 161 (788)
..+.+.|-+..|.++.+-.+.++|. ++-... ..+-....+.++++--++.++....
T Consensus 111 ~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~l------l~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 111 QSLGRRGCWRTALEWCKLLLSLDPDEDPLGVL------LFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred HHHHhcCcHHHHHHHHHHHHhcCCCCCcchhH------HHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 7788888888888888888888888 553222 2222222334566655555554433
No 411
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]
Probab=96.40 E-value=0.14 Score=54.92 Aligned_cols=145 Identities=17% Similarity=0.187 Sum_probs=93.7
Q ss_pred CcCCHH-HHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCC------------cEEEcCCcCCcHHHHH
Q 003891 536 AKITPK-VLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESL------------RVDLLPLILLNHDHMQ 602 (788)
Q Consensus 536 ~K~~~~-~~~~~~~il~~~p~~~l~l~~~~~~~~~~~~~l~~~~~~~gi~~~------------rv~~~~~~~~~~~~~~ 602 (788)
....++ .++++.+++++.||..|+++-.. ++--..+.+.++++|+... .|.+... ..+...
T Consensus 240 H~GEeei~l~~~~~l~~~~~~~llIlVPRH---pERf~~v~~l~~~~gl~~~~rS~~~~~~~~tdV~l~Dt---mGEL~l 313 (419)
T COG1519 240 HEGEEEIILDAHQALKKQFPNLLLILVPRH---PERFKAVENLLKRKGLSVTRRSQGDPPFSDTDVLLGDT---MGELGL 313 (419)
T ss_pred CCchHHHHHHHHHHHHhhCCCceEEEecCC---hhhHHHHHHHHHHcCCeEEeecCCCCCCCCCcEEEEec---HhHHHH
Confidence 444444 88999999999999999997433 1223456677777776532 4444333 357888
Q ss_pred hcccccEeec--CCCCCCchhHHHHhhhCCceeecCCCccC--ccchhHHHhhhCCcccccCCHHHHHHHHHHHh-cCHH
Q 003891 603 AYSLMDISLD--TFPYAGTTTTCESLYMGVPCVTMAGSVHA--HNVGVSLLTKVGLKHLIAKNEDEYVQLALQLA-SDVT 677 (788)
Q Consensus 603 ~~~~~Dv~Ld--~~~~~g~~t~~eal~~GvPvvt~~g~~~~--~r~~~~~l~~~gl~~~ia~~~~~y~~~a~~l~-~d~~ 677 (788)
.|.++||+.- |+--.||.-.+|++++|+|||+ |+... +-....++.+ |-. ++++| ++.+..++.+. .|++
T Consensus 314 ~y~~adiAFVGGSlv~~GGHN~LEpa~~~~pvi~--Gp~~~Nf~ei~~~l~~~-ga~-~~v~~-~~~l~~~v~~l~~~~~ 388 (419)
T COG1519 314 LYGIADIAFVGGSLVPIGGHNPLEPAAFGTPVIF--GPYTFNFSDIAERLLQA-GAG-LQVED-ADLLAKAVELLLADED 388 (419)
T ss_pred HHhhccEEEECCcccCCCCCChhhHHHcCCCEEe--CCccccHHHHHHHHHhc-CCe-EEECC-HHHHHHHHHHhcCCHH
Confidence 9999999842 3322777789999999999998 44322 2222222222 322 34566 66666666655 5588
Q ss_pred HHHHHHHHHHHHhh
Q 003891 678 ALANLRMSLRDLMS 691 (788)
Q Consensus 678 ~~~~~r~~~~~~~~ 691 (788)
.+.+++++..+-+.
T Consensus 389 ~r~~~~~~~~~~v~ 402 (419)
T COG1519 389 KREAYGRAGLEFLA 402 (419)
T ss_pred HHHHHHHHHHHHHH
Confidence 88888877765544
No 412
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.39 E-value=0.13 Score=56.43 Aligned_cols=249 Identities=12% Similarity=0.015 Sum_probs=144.4
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHCCCHHHHHHHHH
Q 003891 41 QDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPM----YAEAYCNMGVIYKNRGDLESAIACYE 116 (788)
Q Consensus 41 ~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~----~~~~~~~la~~~~~~g~~~~A~~~~~ 116 (788)
+...+.+....+..|+++-.....+..+...|+.+.|+..++..++ +. ..-.++.+|.++..+.+|..|...+.
T Consensus 250 ~~~~~~Ll~~~~~~p~ga~wll~~ar~l~~~g~~eaa~~~~~~~v~--~~~kQ~~~l~~fE~aw~~v~~~~~~~aad~~~ 327 (546)
T KOG3783|consen 250 EECEKALKKYRKRYPKGALWLLMEARILSIKGNSEAAIDMESLSIP--IRMKQVKSLMVFERAWLSVGQHQYSRAADSFD 327 (546)
T ss_pred HHHHHHhHHHHHhCCCCccHHHHHHHHHHHcccHHHHHHHHHhccc--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 4455555556667899999999999999999998888888888776 22 23467788999999999999999999
Q ss_pred HHHhhCCCcHHHHHHHH-HHHHHhhh-hhhhcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 003891 117 RCLAVSPNFEIAKNNMA-IALTDLGT-KVKLEGDINQGVAYYKKALYY---NWHYADAMYNLGVAYGEMLKFDMAIVFYE 191 (788)
Q Consensus 117 ~al~~~p~~~~~~~~la-~~l~~lg~-~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 191 (788)
...+.+.=..-.+..++ -++..-.. +....++-++|..+++...++ .|.+...-. .-..++.+.-.
T Consensus 328 ~L~desdWS~a~Y~Yfa~cc~l~~~~~~q~~~~ne~~a~~~~k~~~~l~~~a~K~~P~E~---------f~~RKverf~~ 398 (546)
T KOG3783|consen 328 LLRDESDWSHAFYTYFAGCCLLQNWEVNQGAGGNEEKAQLYFKVGEELLANAGKNLPLEK---------FIVRKVERFVK 398 (546)
T ss_pred HHHhhhhhhHHHHHHHHHHHHhccHHHHHhcccchhHHHHHHHHHHHHHHhccccCchhH---------HHHHHHHHHhc
Confidence 88876543332222222 22211111 112234666666555544332 222211100 00111111111
Q ss_pred HHHhcCCCCHH--HHHHHHHHHHH--cCCHHHHHHHHHHHHh---h-CCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003891 192 LAFHFNPHCAE--ACNNLGVIYKD--RDNLDKAVECYQMALS---I-KPNFS-QSLNNLGVVYTVQGKMDAAAEMIEKAI 262 (788)
Q Consensus 192 ~al~~~p~~~~--~~~~la~~~~~--~g~~~eA~~~~~~al~---~-~p~~~-~~~~~la~~~~~~g~~~eA~~~l~kal 262 (788)
+.- .++.... -++.++.++-. ....++.. -++..++ . ++++. --+..+|.++..+|+...|..+|+..+
T Consensus 399 ~~~-~~~~~~la~P~~El~Y~Wngf~~~s~~~l~-k~~~~~~~~~~~d~Dd~~lk~lL~g~~lR~Lg~~~~a~~~f~i~~ 476 (546)
T KOG3783|consen 399 RGP-LNASILLASPYYELAYFWNGFSRMSKNELE-KMRAELENPKIDDSDDEGLKYLLKGVILRNLGDSEVAPKCFKIQV 476 (546)
T ss_pred ccc-ccccccccchHHHHHHHHhhcccCChhhHH-HHHHHHhccCCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 110 1111111 12333333221 11222222 1111111 1 12211 145678999999999999999999888
Q ss_pred Hh---CCC----CHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhhCCCC
Q 003891 263 AA---NPT----YAEAYNNLGVLYRDAGS-ISLAIDAYEQCLKIDPDS 302 (788)
Q Consensus 263 ~~---~p~----~~~~~~~la~~~~~~g~-~~eA~~~~~~al~l~p~~ 302 (788)
+. ... .|.+++.+|.+|..+|. ..++.+++.+|-+...++
T Consensus 477 ~~e~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~~dY 524 (546)
T KOG3783|consen 477 EKESKRTEDLWAVPFALYELALLYWDLGGGLKEARALLLKAREYASDY 524 (546)
T ss_pred HHHHhhccccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhhcccc
Confidence 43 122 26789999999999999 999999999998776543
No 413
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=96.36 E-value=0.013 Score=59.12 Aligned_cols=66 Identities=27% Similarity=0.359 Sum_probs=60.8
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhhHHhHH
Q 003891 245 YTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRL 310 (788)
Q Consensus 245 ~~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~a~~~~l 310 (788)
..+.|+.++|...|+.|+.+.|++++++..+|......++.-+|-++|-+|+.++|.+..+..++.
T Consensus 126 ~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~ 191 (472)
T KOG3824|consen 126 SRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRA 191 (472)
T ss_pred HHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhh
Confidence 567899999999999999999999999999999999999999999999999999999999877754
No 414
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=96.36 E-value=1.4 Score=56.64 Aligned_cols=108 Identities=13% Similarity=0.141 Sum_probs=82.7
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CC----------
Q 003891 199 HCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAAN-PT---------- 267 (788)
Q Consensus 199 ~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~-p~---------- 267 (788)
...+.|...|.+....|+++.|..++-+|.+.. -++++...|..+..+|+-..|+..+++.++.+ |+
T Consensus 1668 ~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r--~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~p~ 1745 (2382)
T KOG0890|consen 1668 RLGECWLQSARIARLAGHLQRAQNALLNAKESR--LPEIVLERAKLLWQTGDELNALSVLQEILSKNFPDLHTPYTDTPQ 1745 (2382)
T ss_pred hhHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc--cchHHHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCccccch
Confidence 347889999999999999999999998888766 57888999999999999999999999999663 22
Q ss_pred C------HHHHHHHHHHHHHcCCHH--HHHHHHHHHHhhCCCChhhHHh
Q 003891 268 Y------AEAYNNLGVLYRDAGSIS--LAIDAYEQCLKIDPDSRNAGQN 308 (788)
Q Consensus 268 ~------~~~~~~la~~~~~~g~~~--eA~~~~~~al~l~p~~~~a~~~ 308 (788)
. ..+.+.++......++++ .-+++|+.+.++.|...+.++.
T Consensus 1746 ~~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~ewe~~hy~ 1794 (2382)
T KOG0890|consen 1746 SVNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAILPEWEDKHYH 1794 (2382)
T ss_pred hhhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcccccCceee
Confidence 1 123455556666666643 4567889999999866555443
No 415
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=96.33 E-value=1 Score=48.34 Aligned_cols=238 Identities=11% Similarity=0.068 Sum_probs=127.1
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcH
Q 003891 47 YYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFE 126 (788)
Q Consensus 47 ~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 126 (788)
+++++..-+-.++.|+.....+...++-++|+...++++...|. ....++.+|...++-+.-..+|+++.+.-
T Consensus 291 ~~q~~~y~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~sps---L~~~lse~yel~nd~e~v~~~fdk~~q~L---- 363 (660)
T COG5107 291 HNQILDYFYYAEEVWFDYSEYLIGISDKQKALKTVERGIEMSPS---LTMFLSEYYELVNDEEAVYGCFDKCTQDL---- 363 (660)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccCCCc---hheeHHHHHhhcccHHHHhhhHHHHHHHH----
Confidence 45555555556666666666666666666666666666555554 45556666666666555555565554310
Q ss_pred HHHHHHHHHHHHhhhhh---hhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHH
Q 003891 127 IAKNNMAIALTDLGTKV---KLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEA 203 (788)
Q Consensus 127 ~~~~~la~~l~~lg~~~---~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 203 (788)
..-+.. +..- ...|+++...+++-+-.. ...-++..+-+.-.+..-.+.|...|-++-+..-....+
T Consensus 364 ------~r~ys~-~~s~~~s~~D~N~e~~~Ell~kr~~---k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~v 433 (660)
T COG5107 364 ------KRKYSM-GESESASKVDNNFEYSKELLLKRIN---KLTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHV 433 (660)
T ss_pred ------HHHHhh-hhhhhhccccCCccccHHHHHHHHh---hhhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcce
Confidence 000000 0000 012233222222211111 222233333344444555666777777765543222222
Q ss_pred HHHHH-HHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHH
Q 003891 204 CNNLG-VIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTY--AEAYNNLGVLYR 280 (788)
Q Consensus 204 ~~~la-~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~--~~~~~~la~~~~ 280 (788)
+..-| .-+...|++.-|-..|+-.+...|+.+......-..+...++-+.|...|++++..-... ..+|..+...-.
T Consensus 434 yi~~A~~E~~~~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs 513 (660)
T COG5107 434 YIYCAFIEYYATGDRATAYNIFELGLLKFPDSTLYKEKYLLFLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYES 513 (660)
T ss_pred eeeHHHHHHHhcCCcchHHHHHHHHHHhCCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHH
Confidence 22222 224456778888888888888888877766666667777788888888888776543222 344444555555
Q ss_pred HcCCHHHHHHHHHHHHhhCCC
Q 003891 281 DAGSISLAIDAYEQCLKIDPD 301 (788)
Q Consensus 281 ~~g~~~eA~~~~~~al~l~p~ 301 (788)
.-|+...+...-++..++.|.
T Consensus 514 ~~G~lN~v~sLe~rf~e~~pQ 534 (660)
T COG5107 514 MVGSLNNVYSLEERFRELVPQ 534 (660)
T ss_pred hhcchHHHHhHHHHHHHHcCc
Confidence 556666555555555555554
No 416
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=96.30 E-value=1.5 Score=47.15 Aligned_cols=281 Identities=11% Similarity=0.015 Sum_probs=171.5
Q ss_pred HHHHHHcCCCChhhHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003891 6 YHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAA 85 (788)
Q Consensus 6 ~~kaL~~~P~~~~a~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal 85 (788)
++.-++.+|.+.-. |+.+-..+..++.+++-.+.|++...-.|-...+|...-..-...++|.....+|.+++
T Consensus 31 LRerIkdNPtnI~S-------~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL 103 (660)
T COG5107 31 LRERIKDNPTNILS-------YFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCL 103 (660)
T ss_pred HHHHhhcCchhHHH-------HHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHH
Confidence 45567788887766 66667777788999999999999888888777777665555556678888888888887
Q ss_pred HhCCCCHHHHHHHHHHHHHCC---------CHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhh--hhhhhcCCHHHHHH
Q 003891 86 LERPMYAEAYCNMGVIYKNRG---------DLESAIACYERCLAVSPNFEIAKNNMAIALTDLG--TKVKLEGDINQGVA 154 (788)
Q Consensus 86 ~~~p~~~~~~~~la~~~~~~g---------~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg--~~~~~~g~~~~A~~ 154 (788)
...-+ .+.|...-..-.+.+ ..-+|.+..-.+.-..|.....|...+..+...- .....+.+.+.-..
T Consensus 104 ~k~l~-ldLW~lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~ 182 (660)
T COG5107 104 KKSLN-LDLWMLYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRN 182 (660)
T ss_pred hhhcc-HhHHHHHHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHH
Confidence 65433 344433322222222 1223333333333456666666666555443321 11225567777888
Q ss_pred HHHHHHHhCCCCHH-HHHH---------HHHHHHHcC----ChHHHHHHHHHHHhc-------CCCCHHH----------
Q 003891 155 YYKKALYYNWHYAD-AMYN---------LGVAYGEML----KFDMAIVFYELAFHF-------NPHCAEA---------- 203 (788)
Q Consensus 155 ~~~~al~~~p~~~~-~~~~---------la~~~~~~g----~~~~A~~~~~~al~~-------~p~~~~~---------- 203 (788)
.|.+++..--.+.+ .|.. ...+---.| -|-.|...|++...+ +|-+...
T Consensus 183 ~Y~ral~tP~~nleklW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~~r~s~S 262 (660)
T COG5107 183 GYMRALQTPMGNLEKLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINLRTANKAARTSDS 262 (660)
T ss_pred HHHHHHcCccccHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccccCchhhhhhccccccccc
Confidence 88888865444332 1111 111111112 255677777766543 2222111
Q ss_pred -HHHHHHHHHHc-----CC-HHH-HHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 003891 204 -CNNLGVIYKDR-----DN-LDK-AVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNL 275 (788)
Q Consensus 204 -~~~la~~~~~~-----g~-~~e-A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~l 275 (788)
|.+....-... |+ ..+ ---.+++++...+-.++.|+.....+...++-+.|+...++++...|. ....+
T Consensus 263 ~WlNwIkwE~en~l~L~~~~~~qRi~y~~~q~~~y~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~sps---L~~~l 339 (660)
T COG5107 263 NWLNWIKWEMENGLKLGGRPHEQRIHYIHNQILDYFYYAEEVWFDYSEYLIGISDKQKALKTVERGIEMSPS---LTMFL 339 (660)
T ss_pred hhhhHhhHhhcCCcccCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccCCCc---hheeH
Confidence 22222221111 11 222 223567778888888899999988888999999999998888777766 67778
Q ss_pred HHHHHHcCCHHHHHHHHHHHHh
Q 003891 276 GVLYRDAGSISLAIDAYEQCLK 297 (788)
Q Consensus 276 a~~~~~~g~~~eA~~~~~~al~ 297 (788)
+.+|....+-++-..+|+++.+
T Consensus 340 se~yel~nd~e~v~~~fdk~~q 361 (660)
T COG5107 340 SEYYELVNDEEAVYGCFDKCTQ 361 (660)
T ss_pred HHHHhhcccHHHHhhhHHHHHH
Confidence 8888888887777777777654
No 417
>PF06258 Mito_fiss_Elm1: Mitochondrial fission ELM1; InterPro: IPR009367 This family consists of several hypothetical eukaryotic and prokaryotic proteins. The function of this family is unknown.
Probab=96.29 E-value=0.044 Score=57.93 Aligned_cols=202 Identities=13% Similarity=0.041 Sum_probs=120.8
Q ss_pred HHhCCCcEEEeCCCCCCCCcccccccCCCCeEEecccCCCCCCCCCccEEEecCCCCCcCccCCCccceEEcCCCccccC
Q 003891 429 VREDKIDILVELTGHTANNKLGMMACQPAPVQVTWIGYPNTTGLPTIDYRITDSLADPPETKQKHVEELIRLPECFLCYT 508 (788)
Q Consensus 429 i~~d~idilvdl~g~t~~~~~~~~a~r~Apvq~~~~g~~~ttg~~~~Dy~i~d~~~~p~~~~~~~~e~l~~lp~~~~~~~ 508 (788)
+....+|++|=..+.|...-+.+-.....++....++.|..- ...+|.+|+-.+-.++ -...++..++.....+
T Consensus 53 ~~~~~pdLiIsaGr~t~~~~~~l~r~~gg~~~~V~i~~P~~~-~~~FDlvi~p~HD~~~-----~~~Nvl~t~ga~~~i~ 126 (311)
T PF06258_consen 53 LEPPWPDLIISAGRRTAPAALALRRASGGRTKTVQIMDPRLP-PRPFDLVIVPEHDRLP-----RGPNVLPTLGAPNRIT 126 (311)
T ss_pred ccCCCCcEEEECCCchHHHHHHHHHHcCCCceEEEEcCCCCC-ccccCEEEECcccCcC-----CCCceEecccCCCcCC
Confidence 444678999877766653333322223455678888999665 8889999975443331 2245666665433333
Q ss_pred CCCCCCCC----CCCCC--CCCCCeEEEecCCCCcCCHH----HHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHH
Q 003891 509 PSPEAGPV----CPTPA--LTNGFITFGSFNNLAKITPK----VLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTL 578 (788)
Q Consensus 509 ~~~~~~~~----~~~~~--~~~~~~~f~~~~~~~K~~~~----~~~~~~~il~~~p~~~l~l~~~~~~~~~~~~~l~~~~ 578 (788)
|....... ..... -+-..|.+|--++.++++++ +++...++.+..+ ..++|.......+.....|++.+
T Consensus 127 ~~~l~~a~~~~~~~~~~l~~p~~avLIGG~s~~~~~~~~~~~~l~~~l~~~~~~~~-~~~~vttSRRTp~~~~~~L~~~~ 205 (311)
T PF06258_consen 127 PERLAEAAAAWAPRLAALPRPRVAVLIGGDSKHYRWDEEDAERLLDQLAALAAAYG-GSLLVTTSRRTPPEAEAALRELL 205 (311)
T ss_pred HHHHHHHHHhhhhhhccCCCCeEEEEECcCCCCcccCHHHHHHHHHHHHHHHHhCC-CeEEEEcCCCCcHHHHHHHHHhh
Confidence 22111100 00111 23346678888888999998 4444556666666 66777655545556666666655
Q ss_pred HHcCCCCCcEEEcCCcCCcHHHHHhcccccEeecCCCCCCchhHHHHhhhCCceeecCCCccCccc
Q 003891 579 EQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNV 644 (788)
Q Consensus 579 ~~~gi~~~rv~~~~~~~~~~~~~~~~~~~Dv~Ld~~~~~g~~t~~eal~~GvPvvt~~g~~~~~r~ 644 (788)
+ ....+.+....+ ..-|.+.+..||.++-|--+ -.=+.||++.|+||.++.-+.-.+|+
T Consensus 206 ~----~~~~~~~~~~~~-~nPy~~~La~ad~i~VT~DS--vSMvsEA~~tG~pV~v~~l~~~~~r~ 264 (311)
T PF06258_consen 206 K----DNPGVYIWDGTG-ENPYLGFLAAADAIVVTEDS--VSMVSEAAATGKPVYVLPLPGRSGRF 264 (311)
T ss_pred c----CCCceEEecCCC-CCcHHHHHHhCCEEEEcCcc--HHHHHHHHHcCCCEEEecCCCcchHH
Confidence 4 235663334434 34588888999999855322 12368999999999987765433444
No 418
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=96.28 E-value=0.17 Score=54.86 Aligned_cols=141 Identities=16% Similarity=0.047 Sum_probs=80.3
Q ss_pred HHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC--------------------------CCC---HHHHHHHHHH
Q 003891 160 LYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFN--------------------------PHC---AEACNNLGVI 210 (788)
Q Consensus 160 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--------------------------p~~---~~~~~~la~~ 210 (788)
++.+|-+.+++..++.++..+|+.+.|.+.+++|+-.. +.| ..+.+.....
T Consensus 33 l~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~ 112 (360)
T PF04910_consen 33 LQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQS 112 (360)
T ss_pred HHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHH
Confidence 45677778888888888888888888877777775320 111 2233444555
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCC-CHHHH-HHHHHHHHHcCCHHHHHHHHHHHHHhCC-----CCHHHHHHHHHHHHHcC
Q 003891 211 YKDRDNLDKAVECYQMALSIKPN-FSQSL-NNLGVVYTVQGKMDAAAEMIEKAIAANP-----TYAEAYNNLGVLYRDAG 283 (788)
Q Consensus 211 ~~~~g~~~eA~~~~~~al~~~p~-~~~~~-~~la~~~~~~g~~~eA~~~l~kal~~~p-----~~~~~~~~la~~~~~~g 283 (788)
+.+.|-+..|.++.+-.+.++|. ++-.. +.+=....+.++++--++.++....... ..|...+..+.++...+
T Consensus 113 L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn~a~S~aLA~~~l~ 192 (360)
T PF04910_consen 113 LGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPNFAFSIALAYFRLE 192 (360)
T ss_pred HHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCccHHHHHHHHHHHhc
Confidence 56666666666666666666666 44422 2222333445555555555554443111 12334555555555555
Q ss_pred CH---------------HHHHHHHHHHHhhCC
Q 003891 284 SI---------------SLAIDAYEQCLKIDP 300 (788)
Q Consensus 284 ~~---------------~eA~~~~~~al~l~p 300 (788)
+. ++|.+.+++|+...|
T Consensus 193 ~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP 224 (360)
T PF04910_consen 193 KEESSQSSAQSGRSENSESADEALQKAILRFP 224 (360)
T ss_pred CccccccccccccccchhHHHHHHHHHHHHhH
Confidence 55 566666666666555
No 419
>TIGR03568 NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing. This family of enzymes catalyzes the combined epimerization and UDP-hydrolysis of UDP-N-acetylglucosamine to N-acetylmannosamine. This is in contrast to the related enzyme WecB (TIGR00236) which retains the UDP moiety. NeuC acts in concert with NeuA and NeuB to synthesize CMP-N5-acetyl-neuraminate.
Probab=96.24 E-value=0.11 Score=56.75 Aligned_cols=77 Identities=12% Similarity=0.138 Sum_probs=56.1
Q ss_pred CcEEEcCCcCCcHHHHHhcccccEeecCCCCCCchhHHHHhhhCCceeecCCCccCccchhHHHhhhCCccc-ccCCHHH
Q 003891 586 LRVDLLPLILLNHDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHL-IAKNEDE 664 (788)
Q Consensus 586 ~rv~~~~~~~~~~~~~~~~~~~Dv~Ld~~~~~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l~~~gl~~~-ia~~~~~ 664 (788)
++|.+.+.++ ..+++..+..||+++ .+++...-||..+|+|||++.+ ...+|.. |-.-+ |..+.++
T Consensus 262 ~~v~l~~~l~-~~~~l~Ll~~a~~vi----tdSSggi~EA~~lg~Pvv~l~~-R~e~~~~-------g~nvl~vg~~~~~ 328 (365)
T TIGR03568 262 PNFRLFKSLG-QERYLSLLKNADAVI----GNSSSGIIEAPSFGVPTINIGT-RQKGRLR-------ADSVIDVDPDKEE 328 (365)
T ss_pred CCEEEECCCC-hHHHHHHHHhCCEEE----EcChhHHHhhhhcCCCEEeecC-Cchhhhh-------cCeEEEeCCCHHH
Confidence 6899999987 799999999999999 4443445899999999998753 2233322 33334 5568888
Q ss_pred HHHHHHHHhcCH
Q 003891 665 YVQLALQLASDV 676 (788)
Q Consensus 665 y~~~a~~l~~d~ 676 (788)
-++.+.+ +.++
T Consensus 329 I~~a~~~-~~~~ 339 (365)
T TIGR03568 329 IVKAIEK-LLDP 339 (365)
T ss_pred HHHHHHH-HhCh
Confidence 8887777 4555
No 420
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=96.16 E-value=0.0096 Score=39.84 Aligned_cols=30 Identities=43% Similarity=0.874 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCC
Q 003891 94 AYCNMGVIYKNRGDLESAIACYERCLAVSP 123 (788)
Q Consensus 94 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p 123 (788)
+|+.+|.+|..+|++++|+++|+++++++|
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 455555555555555555555555555544
No 421
>cd04299 GT1_Glycogen_Phosphorylase_like This family is most closely related to the oligosaccharide phosphorylase domain family and other unidentified sequences. Oligosaccharide phosphorylase catalyzes the breakdown of oligosaccharides into glucose-1-phosphate units. They are important allosteric enzymes in carbohydrate metabolism. The members of this family are found in bacteria and Archaea.
Probab=96.12 E-value=0.15 Score=60.27 Aligned_cols=179 Identities=14% Similarity=0.116 Sum_probs=107.5
Q ss_pred CCCCeEEEecCCC--CcCCHHHHHHHHHHHhHc----CCcEEEEecCCCCCHHHHHHHHHHHHH----cCCCCCcEEEcC
Q 003891 523 TNGFITFGSFNNL--AKITPKVLQVWARILCAV----PNSRLVVKCKPFCCDSVRHRFLSTLEQ----LGLESLRVDLLP 592 (788)
Q Consensus 523 ~~~~~~f~~~~~~--~K~~~~~~~~~~~il~~~----p~~~l~l~~~~~~~~~~~~~l~~~~~~----~gi~~~rv~~~~ 592 (788)
..+.+++|..-|+ +|...-+++...++.+-. ....+++.|++...+..-..+.+.+.+ -.+. +||+|++
T Consensus 475 dpd~ltigfarRfa~YKR~~Lil~dl~rl~~il~~~~~pvQ~IfaGKAhP~d~~gK~iIk~i~~~a~~p~~~-~kVvfle 553 (778)
T cd04299 475 DPNVLTIGFARRFATYKRATLLLRDPERLKRLLNDPERPVQFIFAGKAHPADEPGKELIQEIVEFSRRPEFR-GRIVFLE 553 (778)
T ss_pred CCCccEEeeeecchhhhhHHHHHHHHHHHHHHhhCCCCCeEEEEEEecCccchHHHHHHHHHHHHHhCcCCC-CcEEEEc
Confidence 3466788888887 898888777766554321 237888888765333332333333332 2343 6999987
Q ss_pred CcCCcHHHHH--hcccccEeecCCC--C-CCchhHHHHhhhCCceeecCCCccCccchhHHHhhhCCcccccC-------
Q 003891 593 LILLNHDHMQ--AYSLMDISLDTFP--Y-AGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIAK------- 660 (788)
Q Consensus 593 ~~~~~~~~~~--~~~~~Dv~Ld~~~--~-~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l~~~gl~~~ia~------- 660 (788)
. ...-++ .+..|||+|.|+- + ..||+-+=|+.-|++-++.-..-...-.. |-.+|.-.
T Consensus 554 ~---Yd~~lA~~LvaG~DvwLn~prrp~EAsGTSgMKA~~NG~LnlSvlDGww~E~~~-------g~nGwaig~~~~~~~ 623 (778)
T cd04299 554 D---YDMALARHLVQGVDVWLNTPRRPLEASGTSGMKAALNGGLNLSVLDGWWDEGYD-------GENGWAIGDGDEYED 623 (778)
T ss_pred C---CCHHHHHHHHhhhhhcccCCCCCCCCCccchHHHHHcCCeeeecccCccccccC-------CCCceEeCCCccccC
Confidence 6 334443 5689999999994 7 78999999999999999755422111111 22233311
Q ss_pred -------CHH---HHHHHHHH-HhcC------H-HHHHHHHHHHHHHhhcCCCCChHHHHHHH-HHHHHHHHHH
Q 003891 661 -------NED---EYVQLALQ-LASD------V-TALANLRMSLRDLMSKSPVCDGQNFALGL-ESTYRNMWHR 715 (788)
Q Consensus 661 -------~~~---~y~~~a~~-l~~d------~-~~~~~~r~~~~~~~~~~~~~~~~~~~~~~-e~~~~~~~~~ 715 (788)
+.+ +-++.+|. +--+ | .+.+.+|+.++.. .|.|++.++++.. +..|.-+-++
T Consensus 624 ~~~~d~~da~~Ly~~Le~~i~p~yy~r~~~g~p~~W~~~~k~sm~~~---~p~fs~~Rmv~eY~~~~Y~p~~~~ 694 (778)
T cd04299 624 DEYQDAEEAEALYDLLENEVIPLFYDRDEGGYPPGWVAMMKHSMATL---GPRFSAERMVREYVERFYLPAARR 694 (778)
T ss_pred hhhcchhhHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhc---ccCCCHHHHHHHHHHHhHHHHHHH
Confidence 111 11222222 3322 3 4777777776643 6889999999765 4555544333
No 422
>PRK11619 lytic murein transglycosylase; Provisional
Probab=96.02 E-value=4.6 Score=47.44 Aligned_cols=268 Identities=12% Similarity=0.018 Sum_probs=142.1
Q ss_pred HHHHHHHcCCCChhhHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003891 5 SYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKA 84 (788)
Q Consensus 5 ~~~kaL~~~P~~~~a~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ka 84 (788)
.++..|+.+|+.+.........+..++ +.+++..-+..+. ..|.+.......+......|+.++|.....++
T Consensus 84 ev~~Fl~~~~~~P~~~~Lr~~~l~~La----~~~~w~~~~~~~~----~~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~l 155 (644)
T PRK11619 84 QVTNFIRANPTLPPARSLQSRFVNELA----RREDWRGLLAFSP----EKPKPVEARCNYYYAKWATGQQQEAWQGAKEL 155 (644)
T ss_pred HHHHHHHHCCCCchHHHHHHHHHHHHH----HccCHHHHHHhcC----CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 455666677776666555544444443 3456665555221 23666666667777777778877777666666
Q ss_pred HHhCCCCHHHHHHHHHHHHH------------------CCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhc
Q 003891 85 ALERPMYAEAYCNMGVIYKN------------------RGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLE 146 (788)
Q Consensus 85 l~~~p~~~~~~~~la~~~~~------------------~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~ 146 (788)
.......+.....+-..+.+ .|+...|....... .++. ..++..+..+ .
T Consensus 156 W~~g~~~p~~cd~l~~~~~~~g~lt~~d~w~R~~~al~~~~~~lA~~l~~~l---~~~~----~~~a~a~~al------~ 222 (644)
T PRK11619 156 WLTGKSLPNACDKLFSVWQQSGKQDPLAYLERIRLAMKAGNTGLVTYLAKQL---PADY----QTIASALIKL------Q 222 (644)
T ss_pred hccCCCCChHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHhc---ChhH----HHHHHHHHHH------H
Confidence 54443333333333333333 33333332222211 0000 0011111111 0
Q ss_pred CCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHHcCCHHHHH
Q 003891 147 GDINQGVAYYKKALYYNWHY-ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHC----AEACNNLGVIYKDRDNLDKAV 221 (788)
Q Consensus 147 g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~eA~ 221 (788)
.+...+...+.. ..+.. ......++..-....+.+.|...+.+......-+ ..+...+|.-....+...+|.
T Consensus 223 ~~p~~~~~~~~~---~~~~~~~~~~~~~~l~Rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~ 299 (644)
T PRK11619 223 NDPNTVETFART---TGPTDFTRQMAAVAFASVARQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQA 299 (644)
T ss_pred HCHHHHHHHhhc---cCCChhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHH
Confidence 112222111111 11111 1122333444445667788888888764444322 233444554444443367788
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 003891 222 ECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLK 297 (788)
Q Consensus 222 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~ 297 (788)
..+..+..... +.+.......+....++++.+..++...-....+.....+.+|..+..+|+.++|..+|+++..
T Consensus 300 ~w~~~~~~~~~-~~~~~e~r~r~Al~~~dw~~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~ 374 (644)
T PRK11619 300 KWRDDVIMRSQ-STSLLERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ 374 (644)
T ss_pred HHHHhcccccC-CcHHHHHHHHHHHHccCHHHHHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 88877654332 3333444444555888998888888776444445678889999999999999999999999844
No 423
>KOG1192 consensus UDP-glucuronosyl and UDP-glucosyl transferase [Carbohydrate transport and metabolism; Energy production and conversion]
Probab=95.96 E-value=0.078 Score=60.69 Aligned_cols=144 Identities=18% Similarity=0.149 Sum_probs=87.6
Q ss_pred CeEEEecCCCC---cCCHHHHHHHHHHHhHcCCcE-EEEecCCCCCHHHHHHHHHHHHHcCCC---CCcEEEcCCcCCcH
Q 003891 526 FITFGSFNNLA---KITPKVLQVWARILCAVPNSR-LVVKCKPFCCDSVRHRFLSTLEQLGLE---SLRVDLLPLILLNH 598 (788)
Q Consensus 526 ~~~f~~~~~~~---K~~~~~~~~~~~il~~~p~~~-l~l~~~~~~~~~~~~~l~~~~~~~gi~---~~rv~~~~~~~~~~ 598 (788)
.++|.||+... .+.++.....+..+...|+.. +|..... .... +.+ |+. ...|++.+++| +.
T Consensus 278 ~vvyvSfGS~~~~~~lp~~~~~~l~~~l~~~~~~~FiW~~~~~-~~~~----~~~-----~~~~~~~~nV~~~~W~P-Q~ 346 (496)
T KOG1192|consen 278 SVVYISFGSMVNSADLPEEQKKELAKALESLQGVTFLWKYRPD-DSIY----FPE-----GLPNRGRGNVVLSKWAP-QN 346 (496)
T ss_pred CeEEEECCcccccccCCHHHHHHHHHHHHhCCCceEEEEecCC-cchh----hhh-----cCCCCCcCceEEecCCC-cH
Confidence 57788899887 899999999999999887776 4544322 1100 111 332 34588889998 66
Q ss_pred HHHHhcccccEeecCCCCCCchhHHHHhhhCCceeecC--CCccCccchhHHHhhhCCcc-ccc--CCHHHHHHHHHHHh
Q 003891 599 DHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMA--GSVHAHNVGVSLLTKVGLKH-LIA--KNEDEYVQLALQLA 673 (788)
Q Consensus 599 ~~~~~~~~~Dv~Ld~~~~~g~~t~~eal~~GvPvvt~~--g~~~~~r~~~~~l~~~gl~~-~ia--~~~~~y~~~a~~l~ 673 (788)
+.+.....+..|+ -.+|-++++|+++.|||+|+++ |+.+.. +-++..-|... ++. -+.++..+....+.
T Consensus 347 ~lll~H~~v~~Fv---THgG~nSt~E~~~~GvP~v~~Plf~DQ~~N---a~~i~~~g~~~v~~~~~~~~~~~~~~~~~il 420 (496)
T KOG1192|consen 347 DLLLDHPAVGGFV---THGGWNSTLESIYSGVPMVCVPLFGDQPLN---ARLLVRHGGGGVLDKRDLVSEELLEAIKEIL 420 (496)
T ss_pred HHhcCCCcCcEEE---ECCcccHHHHHHhcCCceecCCccccchhH---HHHHHhCCCEEEEehhhcCcHHHHHHHHHHH
Confidence 7663344455555 2366678999999999999765 554432 23333333322 111 12222455566667
Q ss_pred cCHHHHHHHHHHH
Q 003891 674 SDVTALANLRMSL 686 (788)
Q Consensus 674 ~d~~~~~~~r~~~ 686 (788)
.+++..+..++-.
T Consensus 421 ~~~~y~~~~~~l~ 433 (496)
T KOG1192|consen 421 ENEEYKEAAKRLS 433 (496)
T ss_pred cChHHHHHHHHHH
Confidence 7776655554443
No 424
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=95.86 E-value=0.0076 Score=41.11 Aligned_cols=26 Identities=50% Similarity=0.792 Sum_probs=14.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh
Q 003891 272 YNNLGVLYRDAGSISLAIDAYEQCLK 297 (788)
Q Consensus 272 ~~~la~~~~~~g~~~eA~~~~~~al~ 297 (788)
+.+||.+|.++|++++|+++|++++.
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45566666666666666666666443
No 425
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=95.85 E-value=0.63 Score=52.35 Aligned_cols=64 Identities=16% Similarity=0.060 Sum_probs=39.3
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--------CHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q 003891 54 DPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPM--------YAEAYCNMGVIYKNRGDLESAIACYERC 118 (788)
Q Consensus 54 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~--------~~~~~~~la~~~~~~g~~~~A~~~~~~a 118 (788)
+| ++..|..++......-.++.|...|-+.-....- ...--...+.+-.--|++++|.+.|-.+
T Consensus 689 nP-HprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~ 760 (1189)
T KOG2041|consen 689 NP-HPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDA 760 (1189)
T ss_pred CC-chHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhcc
Confidence 44 5889999999888888888888877765321100 0001123344444557888888777554
No 426
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=95.83 E-value=0.034 Score=56.22 Aligned_cols=69 Identities=22% Similarity=0.260 Sum_probs=45.6
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Q 003891 67 VYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIA 135 (788)
Q Consensus 67 ~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 135 (788)
-....|+.++|..+|+.++.+.|.+++++..+|......++.-+|-.+|-+++.+.|.+.++..+.+..
T Consensus 125 ~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~RT 193 (472)
T KOG3824|consen 125 RSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRART 193 (472)
T ss_pred HHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhcc
Confidence 344566667777777777777777777777777666666666677777777777777666665554433
No 427
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=95.78 E-value=0.017 Score=38.15 Aligned_cols=31 Identities=29% Similarity=0.415 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 003891 271 AYNNLGVLYRDAGSISLAIDAYEQCLKIDPD 301 (788)
Q Consensus 271 ~~~~la~~~~~~g~~~eA~~~~~~al~l~p~ 301 (788)
+++.+|.++.+.|++++|++.|+++++..|+
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 4556666666666666666666666666665
No 428
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=95.76 E-value=0.038 Score=59.02 Aligned_cols=143 Identities=12% Similarity=0.011 Sum_probs=118.8
Q ss_pred HHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 003891 178 GEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEM 257 (788)
Q Consensus 178 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~ 257 (788)
...|+.-.|-+-...++...|..+......+.++..+|.|+.+...+..+-..-.....+...+-.....+|++++|...
T Consensus 300 ~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s~ 379 (831)
T PRK15180 300 LADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALST 379 (831)
T ss_pred hhccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHHH
Confidence 45688888888889999999999999999999999999999999888776655444445555666777889999999999
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhhHHhHHHHhhhccCCC
Q 003891 258 IEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGH 320 (788)
Q Consensus 258 l~kal~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~a~~~~lla~~~l~~g~ 320 (788)
.+-.+...-+++++..--+..-..+|-+++|.-++++.+.++|.....+.+.+-...|...|.
T Consensus 380 a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~~g~v~~~~~~~~~~~~~ 442 (831)
T PRK15180 380 AEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQSGWVNFLSSTQYFNDGN 442 (831)
T ss_pred HHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCChhcccceeeeccceeccCcc
Confidence 998888777778777777777788899999999999999999988888888777777777765
No 429
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=95.66 E-value=4.4 Score=47.12 Aligned_cols=240 Identities=13% Similarity=0.045 Sum_probs=158.3
Q ss_pred CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH---HCCCHHHHHHH
Q 003891 38 GNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYK---NRGDLESAIAC 114 (788)
Q Consensus 38 g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~---~~g~~~~A~~~ 114 (788)
+.-++-+..+++-+.+++.+...+..|-.++...|++++-...-.++.++.|..+..|.....-.. ..++-.++...
T Consensus 93 ~~~~~ei~t~~ee~ai~~y~~~~~v~Li~llrk~~dl~kl~~ar~~~~~~~pl~~~lWl~Wl~d~~~mt~s~~~~~v~~~ 172 (881)
T KOG0128|consen 93 GGGNQEIRTLEEELAINSYKYAQMVQLIGLLRKLGDLEKLRQARLEMSEIAPLPPHLWLEWLKDELSMTQSEERKEVEEL 172 (881)
T ss_pred ccchhHHHHHHHHhcccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccCcchhHHHHH
Confidence 344556677777777888888889999999999999999888888888888888887766554333 23677788888
Q ss_pred HHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHhCCC-------CHHHHHHHHHHHHHcCChHHHH
Q 003891 115 YERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWH-------YADAMYNLGVAYGEMLKFDMAI 187 (788)
Q Consensus 115 ~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~-------~~~~~~~la~~~~~~g~~~~A~ 187 (788)
|++++.-. +....|...+......+..+...++++.-...|.+++..-.. ....+......|...-..++-+
T Consensus 173 ~ekal~dy-~~v~iw~e~~~y~~~~~~~~~~~~d~k~~R~vf~ral~s~g~~~t~G~~~we~~~E~e~~~l~n~~~~qv~ 251 (881)
T KOG0128|consen 173 FEKALGDY-NSVPIWEEVVNYLVGFGNVAKKSEDYKKERSVFERALRSLGSHITEGAAIWEMYREFEVTYLCNVEQRQVI 251 (881)
T ss_pred HHHHhccc-ccchHHHHHHHHHHhccccccccccchhhhHHHHHHHhhhhhhhcccHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 99988644 344467777777777777777788999999999998865322 2334555666666666667777
Q ss_pred HHHHHHHhcCCCC---HHHHHHHH--H-HHHHcCCHHHHHHHH-------HHHHhhCCCCHHHHHHHHHHHHHcCCHHHH
Q 003891 188 VFYELAFHFNPHC---AEACNNLG--V-IYKDRDNLDKAVECY-------QMALSIKPNFSQSLNNLGVVYTVQGKMDAA 254 (788)
Q Consensus 188 ~~~~~al~~~p~~---~~~~~~la--~-~~~~~g~~~eA~~~~-------~~al~~~p~~~~~~~~la~~~~~~g~~~eA 254 (788)
.++...+...-+. ...+.... . ......+++.|.+-+ ++.++..+.....|..+-......|+.-.-
T Consensus 252 a~~~~el~~~~D~~~~~~~~~~~sk~h~~~~~~~~~~~a~~~l~~~~~~~e~~~q~~~~~~q~~~~yidfe~~~G~p~ri 331 (881)
T KOG0128|consen 252 ALFVRELKQPLDEDTRGWDLSEQSKAHVYDVETKKLDDALKNLAKILFKFERLVQKEPIKDQEWMSYIDFEKKSGDPVRI 331 (881)
T ss_pred HHHHHHHhccchhhhhHHHHHHHHhcchHHHHhccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCchHH
Confidence 7777776654111 11111111 1 112233444444443 333344444455666666777777887777
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHH
Q 003891 255 AEMIEKAIAANPTYAEAYNNLGVL 278 (788)
Q Consensus 255 ~~~l~kal~~~p~~~~~~~~la~~ 278 (788)
...+++++...+.+...|...+..
T Consensus 332 ~l~~eR~~~E~~~~~~~wi~y~~~ 355 (881)
T KOG0128|consen 332 QLIEERAVAEMVLDRALWIGYGVY 355 (881)
T ss_pred HHHHHHHHHhccccHHHHhhhhhh
Confidence 777888877777766666665544
No 430
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=95.55 E-value=0.47 Score=47.45 Aligned_cols=113 Identities=17% Similarity=0.141 Sum_probs=68.2
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhcCC------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH--H
Q 003891 171 YNLGVAYGEMLKFDMAIVFYELAFHFNP------------HCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFS--Q 236 (788)
Q Consensus 171 ~~la~~~~~~g~~~~A~~~~~~al~~~p------------~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~--~ 236 (788)
..+|.+|+..++|.+-.+.+++.-.... ...++|..-..+|..+++-.+-...|++++.+...-+ .
T Consensus 149 tKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPl 228 (440)
T KOG1464|consen 149 TKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPL 228 (440)
T ss_pred chHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchH
Confidence 3578888888887777666665543311 1234555556677777777777888888887654322 2
Q ss_pred HH----HHHHHHHHHcCCHHHHHHHHHHHHHhCC-----CCHH--HHHHHHHHHHHcC
Q 003891 237 SL----NNLGVVYTVQGKMDAAAEMIEKAIAANP-----TYAE--AYNNLGVLYRDAG 283 (788)
Q Consensus 237 ~~----~~la~~~~~~g~~~eA~~~l~kal~~~p-----~~~~--~~~~la~~~~~~g 283 (788)
+. -.=|..+.+.|++++|-.-|-.|++... .... -|.-||..+.+.|
T Consensus 229 ImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttCLKYLVLANMLmkS~ 286 (440)
T KOG1464|consen 229 IMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLANMLMKSG 286 (440)
T ss_pred HHhHHHHcCCccccccchHHHHHhHHHHHHhcccccCCcchhHHHHHHHHHHHHHHcC
Confidence 21 1224556777888888877777776532 2222 2444566665554
No 431
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=95.52 E-value=3 Score=45.10 Aligned_cols=190 Identities=12% Similarity=0.040 Sum_probs=112.2
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH------HHHHH-HCCCHHHH---HHHHHHHHhhCCCcHHHHHHHHH
Q 003891 65 GVVYSELMQYDTALGCYEKAALERPMYAEAYCNM------GVIYK-NRGDLESA---IACYERCLAVSPNFEIAKNNMAI 134 (788)
Q Consensus 65 g~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~l------a~~~~-~~g~~~~A---~~~~~~al~~~p~~~~~~~~la~ 134 (788)
-....+.++..+|.+++.-...++|+.....-.+ -.+.. .-.++.+- +..++.+-..+-+ ...+..
T Consensus 305 Ls~~Vk~~~T~~a~q~l~lL~~ldp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiD----rqQLvh 380 (549)
T PF07079_consen 305 LSFKVKQVQTEEAKQYLALLKILDPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDID----RQQLVH 380 (549)
T ss_pred HHHHHHHHhHHHHHHHHHHHHhcCCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhccc----HHHHHH
Confidence 3344567778888888877777777754211111 11111 11112222 2222222222222 223344
Q ss_pred HHHHhhhhhhhcCC-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHH--HHHHHHhc---------CC---C
Q 003891 135 ALTDLGTKVKLEGD-INQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIV--FYELAFHF---------NP---H 199 (788)
Q Consensus 135 ~l~~lg~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~--~~~~al~~---------~p---~ 199 (788)
-+...+.-+...|. -++|++.++.+++..+.+.......-. +-...|.+|+. .+.+.+++ .| .
T Consensus 381 ~L~~~Ak~lW~~g~~dekalnLLk~il~ft~yD~ec~n~v~~--fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~ 458 (549)
T PF07079_consen 381 YLVFGAKHLWEIGQCDEKALNLLKLILQFTNYDIECENIVFL--FVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITIS 458 (549)
T ss_pred HHHHHHHHHHhcCCccHHHHHHHHHHHHhccccHHHHHHHHH--HHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCccccc
Confidence 44555566666666 788999999999998887754332211 11122333321 12222211 12 2
Q ss_pred CHHHHHHHH--HHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003891 200 CAEACNNLG--VIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKA 261 (788)
Q Consensus 200 ~~~~~~~la--~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~ka 261 (788)
+.+.-+.++ ..++.+|+|.++.-+-.=..++.| ++.++..+|.++...++|++|..++.+.
T Consensus 459 e~eian~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 459 EEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred HHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 344555554 557789999999999888889999 8999999999999999999999998875
No 432
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=95.48 E-value=0.11 Score=44.93 Aligned_cols=92 Identities=13% Similarity=0.130 Sum_probs=74.3
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCC-----------HHHHHHHHHHHHHhCCCCHHHH
Q 003891 30 LGTSLKLAGNTQDGIQKYYEALKIDPHYA---PAYYNLGVVYSELMQ-----------YDTALGCYEKAALERPMYAEAY 95 (788)
Q Consensus 30 lg~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~lg~~~~~~g~-----------~~~A~~~~~kal~~~p~~~~~~ 95 (788)
++..++..|++-+|+++.++.+..++++. ..+...|.++..+.. .-.++++|.++..+.|..+..+
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~L 81 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHSL 81 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHHH
Confidence 35667889999999999999999988765 556677877765432 3568889999999999998889
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhh
Q 003891 96 CNMGVIYKNRGDLESAIACYERCLAV 121 (788)
Q Consensus 96 ~~la~~~~~~g~~~~A~~~~~~al~~ 121 (788)
+.+|.-+-....|+++..-.++++.+
T Consensus 82 ~~la~~l~s~~~Ykk~v~kak~~Lsv 107 (111)
T PF04781_consen 82 FELASQLGSVKYYKKAVKKAKRGLSV 107 (111)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence 99988877777888888888887765
No 433
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=95.40 E-value=0.029 Score=37.00 Aligned_cols=29 Identities=28% Similarity=0.541 Sum_probs=12.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 003891 61 YYNLGVVYSELMQYDTALGCYEKAALERP 89 (788)
Q Consensus 61 ~~~lg~~~~~~g~~~~A~~~~~kal~~~p 89 (788)
++.+|.++...|++++|+..|+++++..|
T Consensus 3 ~~~~a~~~~~~g~~~~A~~~~~~~~~~~P 31 (33)
T PF13174_consen 3 LYRLARCYYKLGDYDEAIEYFQRLIKRYP 31 (33)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHCc
Confidence 34444444444444444444444444444
No 434
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.33 E-value=0.93 Score=50.03 Aligned_cols=241 Identities=14% Similarity=0.107 Sum_probs=140.2
Q ss_pred HHHHHHHHHcCCCChhhHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCHHHHHHH
Q 003891 3 VASYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPH--YAPAYYNLGVVYSELMQYDTALGC 80 (788)
Q Consensus 3 i~~~~kaL~~~P~~~~a~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~lg~~~~~~g~~~~A~~~ 80 (788)
.+.+.+.....|+++-. +...+..+...|+.+.|+..++..++..-. ..-.++.+|.++..+.+|..|...
T Consensus 253 ~~~Ll~~~~~~p~ga~w-------ll~~ar~l~~~g~~eaa~~~~~~~v~~~~kQ~~~l~~fE~aw~~v~~~~~~~aad~ 325 (546)
T KOG3783|consen 253 EKALKKYRKRYPKGALW-------LLMEARILSIKGNSEAAIDMESLSIPIRMKQVKSLMVFERAWLSVGQHQYSRAADS 325 (546)
T ss_pred HHHhHHHHHhCCCCccH-------HHHHHHHHHHcccHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 34555666777877655 455566667778888888888887761111 244678889999999999999999
Q ss_pred HHHHHHhCCCCHHHHHHHH-HHHHH--------CCCHHHHHHHHHHHHh---hCCCcHHHHHHHHHHHHHhhhhhhhcCC
Q 003891 81 YEKAALERPMYAEAYCNMG-VIYKN--------RGDLESAIACYERCLA---VSPNFEIAKNNMAIALTDLGTKVKLEGD 148 (788)
Q Consensus 81 ~~kal~~~p~~~~~~~~la-~~~~~--------~g~~~~A~~~~~~al~---~~p~~~~~~~~la~~l~~lg~~~~~~g~ 148 (788)
+....+.+.-.--.|..++ .|+.. .|+-++|..+++...+ ..|++..... .-
T Consensus 326 ~~~L~desdWS~a~Y~Yfa~cc~l~~~~~~q~~~~ne~~a~~~~k~~~~l~~~a~K~~P~E~----------------f~ 389 (546)
T KOG3783|consen 326 FDLLRDESDWSHAFYTYFAGCCLLQNWEVNQGAGGNEEKAQLYFKVGEELLANAGKNLPLEK----------------FI 389 (546)
T ss_pred HHHHHhhhhhhHHHHHHHHHHHHhccHHHHHhcccchhHHHHHHHHHHHHHHhccccCchhH----------------HH
Confidence 9999887766554555544 44432 2355555555544332 2222211100 01
Q ss_pred HHHHHHHHHHHHHhCCCCHH--HHHHHHHHHHH--cCChHHHHHHHHHHH---hc-CCCC-HHHHHHHHHHHHHcCCHHH
Q 003891 149 INQGVAYYKKALYYNWHYAD--AMYNLGVAYGE--MLKFDMAIVFYELAF---HF-NPHC-AEACNNLGVIYKDRDNLDK 219 (788)
Q Consensus 149 ~~~A~~~~~~al~~~p~~~~--~~~~la~~~~~--~g~~~~A~~~~~~al---~~-~p~~-~~~~~~la~~~~~~g~~~e 219 (788)
..++.++-.+.- .++.... .++.++..+.. ....++.+ -++..+ +. ++++ .--+..+|.++..+|+...
T Consensus 390 ~RKverf~~~~~-~~~~~~la~P~~El~Y~Wngf~~~s~~~l~-k~~~~~~~~~~~d~Dd~~lk~lL~g~~lR~Lg~~~~ 467 (546)
T KOG3783|consen 390 VRKVERFVKRGP-LNASILLASPYYELAYFWNGFSRMSKNELE-KMRAELENPKIDDSDDEGLKYLLKGVILRNLGDSEV 467 (546)
T ss_pred HHHHHHHhcccc-ccccccccchHHHHHHHHhhcccCChhhHH-HHHHHHhccCCCCchHHHHHHHHHHHHHHHcCCHHH
Confidence 112222111110 1111111 12333333221 11222222 111111 11 2222 2345678999999999999
Q ss_pred HHHHHHHHHhhC---CC----CHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCC
Q 003891 220 AVECYQMALSIK---PN----FSQSLNNLGVVYTVQGK-MDAAAEMIEKAIAANPTY 268 (788)
Q Consensus 220 A~~~~~~al~~~---p~----~~~~~~~la~~~~~~g~-~~eA~~~l~kal~~~p~~ 268 (788)
|..+|+..++.. .. .|.+++.+|..+..++. ..++.+++.+|-+...++
T Consensus 468 a~~~f~i~~~~e~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~~dY 524 (546)
T KOG3783|consen 468 APKCFKIQVEKESKRTEDLWAVPFALYELALLYWDLGGGLKEARALLLKAREYASDY 524 (546)
T ss_pred HHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhhcccc
Confidence 999999887431 11 25689999999999998 999999999998776543
No 435
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=95.26 E-value=0.67 Score=51.54 Aligned_cols=138 Identities=17% Similarity=0.081 Sum_probs=105.7
Q ss_pred CChHHHHHHHHHHHHhCCCCHHHHHH--HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Q 003891 38 GNTQDGIQKYYEALKIDPHYAPAYYN--LGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACY 115 (788)
Q Consensus 38 g~~~~A~~~~~~al~~~p~~~~~~~~--lg~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 115 (788)
+....++..+...+..++.++..+.. +...+...+....+...+..++..+|.+..+..+|+......|....+...+
T Consensus 45 ~~~~~~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~ 124 (620)
T COG3914 45 GLQALAIYALLLGIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADI 124 (620)
T ss_pred CchhHHHHHHHccCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHH
Confidence 33344677777777778888776443 4777778888889999999999999999999999999888888776666655
Q ss_pred HH-HHhhCCCcHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 003891 116 ER-CLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVA 176 (788)
Q Consensus 116 ~~-al~~~p~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 176 (788)
.. +....|++......+...+. ++......++..++....+++....|.++.+...+...
T Consensus 125 ~~~a~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~l~~~~d~~p~~~~~~~~~~~~ 185 (620)
T COG3914 125 SEIAEWLSPDNAEFLGHLIRFYQ-LGRYLKLLGRTAEAELALERAVDLLPKYPRVLGALMTA 185 (620)
T ss_pred HHHHHhcCcchHHHHhhHHHHHH-HHHHHHHhccHHHHHHHHHHHHHhhhhhhhhHhHHHHH
Confidence 55 88888888877666666665 78888888888888888888888888876655554444
No 436
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=95.23 E-value=1.2 Score=44.56 Aligned_cols=193 Identities=15% Similarity=0.143 Sum_probs=118.5
Q ss_pred CCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHhC-----CCCH-HHHHHHHHHHHH
Q 003891 106 GDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYN-----WHYA-DAMYNLGVAYGE 179 (788)
Q Consensus 106 g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~-----p~~~-~~~~~la~~~~~ 179 (788)
.+.++|+..|++.+++.+...+.-+ .++.++-.++...+++++-.+.|++.+..- .+.. .....+-..-..
T Consensus 41 ~~p~~Al~sF~kVlelEgEKgeWGF---KALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiSt 117 (440)
T KOG1464|consen 41 DEPKEALSSFQKVLELEGEKGEWGF---KALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYIST 117 (440)
T ss_pred cCHHHHHHHHHHHHhcccccchhHH---HHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhh
Confidence 4788889999999888877553322 344555566666778888888877776431 1111 122222222223
Q ss_pred cCChHHHHHHHHHHHhc--CCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC------------CHHHHHHH
Q 003891 180 MLKFDMAIVFYELAFHF--NPHC----AEACNNLGVIYKDRDNLDKAVECYQMALSIKPN------------FSQSLNNL 241 (788)
Q Consensus 180 ~g~~~~A~~~~~~al~~--~p~~----~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~------------~~~~~~~l 241 (788)
..+.+--.+.|+..+.. +..+ ......+|.+|+..++|.+-.+.+++.-+.+.. ..++|..-
T Consensus 118 S~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlE 197 (440)
T KOG1464|consen 118 SKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALE 197 (440)
T ss_pred hhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhH
Confidence 33444444444444332 1122 233456899999999988887777766544221 12355555
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCH--HH----HHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 003891 242 GVVYTVQGKMDAAAEMIEKAIAANPTYA--EA----YNNLGVLYRDAGSISLAIDAYEQCLKIDPD 301 (788)
Q Consensus 242 a~~~~~~g~~~eA~~~l~kal~~~p~~~--~~----~~~la~~~~~~g~~~eA~~~~~~al~l~p~ 301 (788)
...|..+++-.+-...|++++.+....| .+ .-.=|..+.+.|++++|-.-|-+|++-..+
T Consensus 198 IQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDE 263 (440)
T KOG1464|consen 198 IQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDE 263 (440)
T ss_pred hhhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHHHHHhcccc
Confidence 6778888998888899999998754332 22 122355677889999999888888876443
No 437
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=95.20 E-value=0.18 Score=42.54 Aligned_cols=50 Identities=28% Similarity=0.292 Sum_probs=37.5
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCh
Q 003891 254 AAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSR 303 (788)
Q Consensus 254 A~~~l~kal~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~ 303 (788)
.+..+++.++.+|++..+.+.+|..+...|++++|++.+-.+++.++++.
T Consensus 7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~ 56 (90)
T PF14561_consen 7 DIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYE 56 (90)
T ss_dssp HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCC
T ss_pred cHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccc
Confidence 35567778888888888888888888888888888888888888877763
No 438
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=95.19 E-value=0.039 Score=37.57 Aligned_cols=28 Identities=50% Similarity=0.845 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhh
Q 003891 94 AYCNMGVIYKNRGDLESAIACYERCLAV 121 (788)
Q Consensus 94 ~~~~la~~~~~~g~~~~A~~~~~~al~~ 121 (788)
++.+||.+|...|++++|+++|++++.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4678888888888888888888886644
No 439
>cd03789 GT1_LPS_heptosyltransferase Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=95.17 E-value=0.23 Score=51.96 Aligned_cols=95 Identities=19% Similarity=0.208 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHHHHhcccccEeecCCCCCCc
Q 003891 540 PKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPYAGT 619 (788)
Q Consensus 540 ~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~~~~l~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~~Dv~Ld~~~~~g~ 619 (788)
++.+...++.+... +.++++.|.+ ..++..++..+..| ...-+.+.+... -.+....++.+|+++.+- +|
T Consensus 139 ~~~~~~l~~~l~~~-~~~ivl~g~~----~e~~~~~~i~~~~~-~~~~~~~~~~~~-l~e~~~li~~~~l~I~~D--sg- 208 (279)
T cd03789 139 AERFAALADRLLAR-GARVVLTGGP----AERELAEEIAAALG-GPRVVNLAGKTS-LRELAALLARADLVVTND--SG- 208 (279)
T ss_pred HHHHHHHHHHHHHC-CCEEEEEech----hhHHHHHHHHHhcC-CCccccCcCCCC-HHHHHHHHHhCCEEEeeC--CH-
Confidence 34444445444444 6788888765 33333333333333 223345666654 688999999999998432 22
Q ss_pred hhHHHHhhhCCceeecCCCccCccch
Q 003891 620 TTTCESLYMGVPCVTMAGSVHAHNVG 645 (788)
Q Consensus 620 ~t~~eal~~GvPvvt~~g~~~~~r~~ 645 (788)
++-=|.++|+|+|++-|.+...+.+
T Consensus 209 -~~HlA~a~~~p~i~l~g~~~~~~~~ 233 (279)
T cd03789 209 -PMHLAAALGTPTVALFGPTDPARTG 233 (279)
T ss_pred -HHHHHHHcCCCEEEEECCCCccccC
Confidence 2333458899999999988777654
No 440
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=95.16 E-value=8.7 Score=46.73 Aligned_cols=123 Identities=14% Similarity=0.073 Sum_probs=80.7
Q ss_pred HHHHHHHHHHcCCCChh---hHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Q 003891 2 LVASYHKALSADPSYKP---AAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTAL 78 (788)
Q Consensus 2 Ai~~~~kaL~~~P~~~~---a~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~ 78 (788)
|+..|++.-...|+-.+ +....+.++...+........+++|+..|++.- -.|.-+--|...|.+|..+|+|++-+
T Consensus 494 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 572 (932)
T PRK13184 494 ALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLH-GGVGAPLEYLGKALVYQRLGEYNEEI 572 (932)
T ss_pred HHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhc-CCCCCchHHHhHHHHHHHhhhHHHHH
Confidence 56667777777887554 545555555555544433346788888887743 35666778889999999999999999
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHC-----CCHHHHHHHHHHHHhhCCCc
Q 003891 79 GCYEKAALERPMYAEAYCNMGVIYKNR-----GDLESAIACYERCLAVSPNF 125 (788)
Q Consensus 79 ~~~~kal~~~p~~~~~~~~la~~~~~~-----g~~~~A~~~~~~al~~~p~~ 125 (788)
++|.-+++..|+.+..-...-.+-.++ .+-..|....--++...|..
T Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 624 (932)
T PRK13184 573 KSLLLALKRYSQHPEISRLRDHLVYRLHESLYKHRREALVFMLLALWIAPEK 624 (932)
T ss_pred HHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccc
Confidence 999999999988765432222221111 12334555555666666654
No 441
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=95.09 E-value=8.9 Score=46.66 Aligned_cols=108 Identities=13% Similarity=0.086 Sum_probs=82.4
Q ss_pred HHHHHHcCChHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHc----C---CHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 003891 31 GTSLKLAGNTQDGIQKYYEALKIDPHY---APAYYNLGVVYSEL----M---QYDTALGCYEKAALERPMYAEAYCNMGV 100 (788)
Q Consensus 31 g~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~----g---~~~~A~~~~~kal~~~p~~~~~~~~la~ 100 (788)
..++...+.|++|+..|++.-...|.. -++.+..|.....+ | .+++|+..|++.- -.|.-+--|...|.
T Consensus 482 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 560 (932)
T PRK13184 482 PDAFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLH-GGVGAPLEYLGKAL 560 (932)
T ss_pred cHHHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhc-CCCCCchHHHhHHH
Confidence 355667788999999999999888775 56778888877653 2 4667777776643 35666778899999
Q ss_pred HHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHh
Q 003891 101 IYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDL 139 (788)
Q Consensus 101 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~l 139 (788)
+|..+|++++-+++|..|++..|+++......-.+.+.+
T Consensus 561 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 599 (932)
T PRK13184 561 VYQRLGEYNEEIKSLLLALKRYSQHPEISRLRDHLVYRL 599 (932)
T ss_pred HHHHhhhHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHH
Confidence 999999999999999999999999886544333333333
No 442
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=95.07 E-value=4.1 Score=41.33 Aligned_cols=272 Identities=11% Similarity=0.053 Sum_probs=153.5
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHhCC--------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCHHH
Q 003891 28 TDLGTSLKLAGNTQDGIQKYYEALKIDP--------HYAPAYYNLGVVYSELMQYDTALGCYEKAALE-----RPMYAEA 94 (788)
Q Consensus 28 ~~lg~~~~~~g~~~~A~~~~~~al~~~p--------~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~-----~p~~~~~ 94 (788)
..+++-..+.+++++|+..|.+.+...- +...+...++.+|...|++..--+.....-+. .|....+
T Consensus 7 le~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Ki 86 (421)
T COG5159 7 LELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKI 86 (421)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHH
Confidence 3456666778999999999999987621 13457788999999999887655544433221 1222222
Q ss_pred HHHHHHHH-HHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHh------CCCCH
Q 003891 95 YCNMGVIY-KNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYY------NWHYA 167 (788)
Q Consensus 95 ~~~la~~~-~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~------~p~~~ 167 (788)
...+...+ .....++.-+..+...++........... -..-..+...+.+.|.|.+|+....-.+.. .+...
T Consensus 87 irtLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr-~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li 165 (421)
T COG5159 87 IRTLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLR-LELECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLI 165 (421)
T ss_pred HHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCcccee
Confidence 22222221 12345666666666666654332222111 122344566677788999998877666532 23344
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhc-----CCCCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC---CCHHH
Q 003891 168 DAMYNLGVAYGEMLKFDMAIVFYELAFHF-----NPHCAE--ACNNLGVIYKDRDNLDKAVECYQMALSIKP---NFSQS 237 (788)
Q Consensus 168 ~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~~~~--~~~~la~~~~~~g~~~eA~~~~~~al~~~p---~~~~~ 237 (788)
.++..-..+|....+..++...+..+-.. .|.... .-..-|...+.-.+|.-|..+|-++++-.. .+..+
T Consensus 166 ~vhllESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~lDL~sGIlhcdd~dyktA~SYF~Ea~Egft~l~~d~kA 245 (421)
T COG5159 166 TVHLLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQLDLLSGILHCDDRDYKTASSYFIEALEGFTLLKMDVKA 245 (421)
T ss_pred ehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHHHHhccceeeccccchhHHHHHHHHHhccccccchHHH
Confidence 56777778888888888877777665443 232222 223335666777889999999998887532 23333
Q ss_pred HHHHHHHH---HHcCCHHHHHHHHH--HHHH-hCCCCHHHHHHHHHHHH--HcCCHHHHHHHHHHHHhhCC
Q 003891 238 LNNLGVVY---TVQGKMDAAAEMIE--KAIA-ANPTYAEAYNNLGVLYR--DAGSISLAIDAYEQCLKIDP 300 (788)
Q Consensus 238 ~~~la~~~---~~~g~~~eA~~~l~--kal~-~~p~~~~~~~~la~~~~--~~g~~~eA~~~~~~al~l~p 300 (788)
...+-..+ ...+..++-...++ ..++ .+....++....+..+. .+.+|..|++.|+.-+..+|
T Consensus 246 c~sLkYmlLSkIMlN~~~evk~vl~~K~t~~~y~~r~I~am~avaea~~NRsL~df~~aL~qY~~el~~D~ 316 (421)
T COG5159 246 CVSLKYMLLSKIMLNRREEVKAVLRNKNTLKHYDDRMIRAMLAVAEAFGNRSLKDFSDALAQYSDELHQDS 316 (421)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHccchhHhhhhhhhHHHHHHHHHHhCCCcHhhHHHHHHHhhHHhccCH
Confidence 32222211 12233333222221 1222 12233445555555553 34567777777777665554
No 443
>PF05693 Glycogen_syn: Glycogen synthase; InterPro: IPR008631 This family consists of the eukaryotic glycogen synthase proteins GYS1, GYS2 and GYS3. Glycogen synthase (GS) is the enzyme responsible for the synthesis of -1,4-linked glucose chains in glycogen. It is the rate limiting enzyme in the synthesis of the polysaccharide, and its activity is highly regulated through phosphorylation at multiple sites and also by allosteric effectors, mainly glucose 6-phosphate (G6P) [].; GO: 0004373 glycogen (starch) synthase activity, 0005978 glycogen biosynthetic process; PDB: 3NB0_C 3RT1_C 3RSZ_D 3O3C_B 3NAZ_B 3NCH_D.
Probab=95.06 E-value=0.033 Score=62.42 Aligned_cols=113 Identities=17% Similarity=0.117 Sum_probs=64.9
Q ss_pred HHHHHhcccccEeecCCCC-CCchhHHHHhhhCCceeecCCCccCccchhHHHhhhC---Ccc--cccC-------CHHH
Q 003891 598 HDHMQAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVG---LKH--LIAK-------NEDE 664 (788)
Q Consensus 598 ~~~~~~~~~~Dv~Ld~~~~-~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l~~~g---l~~--~ia~-------~~~~ 664 (788)
-+|-.....||+.+-|+-| .=|-|-+|+.+||||.||-.-..| |.-+...++ -.+ .|-. +.++
T Consensus 461 l~Y~dfv~GcdLgvFPSYYEPWGYTPlE~~a~gVPsITTnLsGF----G~~~~~~~~~~~~~GV~VvdR~~~n~~e~v~~ 536 (633)
T PF05693_consen 461 LDYYDFVRGCDLGVFPSYYEPWGYTPLECTAFGVPSITTNLSGF----GCWMQEHIEDPEEYGVYVVDRRDKNYDESVNQ 536 (633)
T ss_dssp S-HHHHHHHSSEEEE--SSBSS-HHHHHHHHTT--EEEETTBHH----HHHHHTTS-HHGGGTEEEE-SSSS-HHHHHHH
T ss_pred CCHHHHhccCceeeeccccccccCChHHHhhcCCceeeccchhH----HHHHHHhhccCcCCcEEEEeCCCCCHHHHHHH
Confidence 3455566679999999988 779999999999999999332111 101111111 011 2222 3444
Q ss_pred HHHHHHHHhc-CHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHHHh
Q 003891 665 YVQLALQLAS-DVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRNMWHRYC 717 (788)
Q Consensus 665 y~~~a~~l~~-d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~ 717 (788)
+.+....++. +...+..+|.+.+ + -|.++|++.|....+++|.-+.++-.
T Consensus 537 la~~l~~f~~~~~rqri~~Rn~ae-~--LS~~~dW~~~~~yY~~Ay~~AL~~a~ 587 (633)
T PF05693_consen 537 LADFLYKFCQLSRRQRIIQRNRAE-R--LSDLADWKNFGKYYEKAYDLALRRAY 587 (633)
T ss_dssp HHHHHHHHHT--HHHHHHHHHHHH-H--HGGGGBHHHHCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHH-H--HHHhCCHHHHHHHHHHHHHHHHHhcC
Confidence 4444444443 4445555555543 2 26778999999999999999988753
No 444
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=94.99 E-value=13 Score=48.55 Aligned_cols=81 Identities=11% Similarity=0.165 Sum_probs=66.1
Q ss_pred HHHHHHHHHHHHhh-------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Q 003891 217 LDKAVECYQMALSI-------KPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAI 289 (788)
Q Consensus 217 ~~eA~~~~~~al~~-------~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~~eA~ 289 (788)
..+-+-.+++++-. +....+.|...|++....|+++.|..++-+|.+.. -++++...|+.+...|+-..|+
T Consensus 1645 ~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r--~~~i~~E~AK~lW~~gd~~~Al 1722 (2382)
T KOG0890|consen 1645 IKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNALLNAKESR--LPEIVLERAKLLWQTGDELNAL 1722 (2382)
T ss_pred HHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc--cchHHHHHHHHHHhhccHHHHH
Confidence 45555555555422 23346799999999999999999999999998776 5789999999999999999999
Q ss_pred HHHHHHHhhC
Q 003891 290 DAYEQCLKID 299 (788)
Q Consensus 290 ~~~~~al~l~ 299 (788)
..+++.++.+
T Consensus 1723 ~~Lq~~l~~~ 1732 (2382)
T KOG0890|consen 1723 SVLQEILSKN 1732 (2382)
T ss_pred HHHHHHHHhh
Confidence 9999999653
No 445
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=94.95 E-value=7.3 Score=42.87 Aligned_cols=39 Identities=13% Similarity=0.121 Sum_probs=26.4
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 003891 243 VVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRD 281 (788)
Q Consensus 243 ~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~ 281 (788)
.-|....++++|+..+...++.+..+..+..++...+..
T Consensus 213 ~~Ys~~eN~~eai~Ilk~il~~d~k~~~ar~~~i~~lRd 251 (711)
T COG1747 213 KKYSENENWTEAIRILKHILEHDEKDVWARKEIIENLRD 251 (711)
T ss_pred HHhccccCHHHHHHHHHHHhhhcchhhhHHHHHHHHHHH
Confidence 335556778888888888888777776666665555444
No 446
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=94.90 E-value=0.069 Score=39.85 Aligned_cols=36 Identities=25% Similarity=0.282 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhhH
Q 003891 271 AYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAG 306 (788)
Q Consensus 271 ~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~a~ 306 (788)
.++.+|..+.++|+|++|..+.+.+++++|+|..+.
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~ 38 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQ 38 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHH
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHH
Confidence 456677777777777777777777777777776664
No 447
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=94.88 E-value=5.6 Score=41.51 Aligned_cols=273 Identities=11% Similarity=0.020 Sum_probs=167.8
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHh--CCCC--------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CC--CCH
Q 003891 28 TDLGTSLKLAGNTQDGIQKYYEALKI--DPHY--------APAYYNLGVVYSELMQYDTALGCYEKAALE---RP--MYA 92 (788)
Q Consensus 28 ~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~--------~~~~~~lg~~~~~~g~~~~A~~~~~kal~~---~p--~~~ 92 (788)
...+......+++++++..|.+.+.. .|.+ ......+|..|.+.|++++-....+..-.. -+ ...
T Consensus 8 ~e~~~~~~~~~~~~~~~~il~~vl~~~~~~~s~e~~i~~kE~~Ilel~~ll~~~~~~~~lr~li~~~Rpf~~~v~Kakaa 87 (411)
T KOG1463|consen 8 LERAQNLVSVNQVEEAINILKSVLNKAQGASSDEARIKEKEQSILELGDLLAKEGDAEELRDLITSLRPFLSSVSKAKAA 87 (411)
T ss_pred HHHHHHhcccchhhhhHHHHHHHhhhhccccCCHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHhhhHHHH
Confidence 44455556667789999999998874 2221 346788999999999988776666554322 11 112
Q ss_pred HHHHHHHHHHH-HCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHh----C--CC
Q 003891 93 EAYCNMGVIYK-NRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYY----N--WH 165 (788)
Q Consensus 93 ~~~~~la~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~----~--p~ 165 (788)
.....+-.... ..+..+.-+..+..+++.......... .-..-..+...|...++|.+|+......+.. + +.
T Consensus 88 KlvR~Lvd~~~~~~~~~~~~i~l~~~cIeWA~~ekRtFL-Rq~Learli~Ly~d~~~YteAlaL~~~L~rElKKlDDK~l 166 (411)
T KOG1463|consen 88 KLVRSLVDMFLKIDDGTGDQIELCTECIEWAKREKRTFL-RQSLEARLIRLYNDTKRYTEALALINDLLRELKKLDDKIL 166 (411)
T ss_pred HHHHHHHHHHccCCCCcchHHHHHHHHHHHHHHHhHHHH-HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccc
Confidence 22222222222 234455566666666665433322211 1223345666777888999999887776643 2 12
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-----CCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC---CCH
Q 003891 166 YADAMYNLGVAYGEMLKFDMAIVFYELAFHFN-----PHC--AEACNNLGVIYKDRDNLDKAVECYQMALSIKP---NFS 235 (788)
Q Consensus 166 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-----p~~--~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p---~~~ 235 (788)
-.+++..-..+|+...+..+|...+..|-... |.. ...-..-|.++....+|.-|..+|-+|++-.. ++.
T Consensus 167 Lvev~llESK~y~~l~Nl~KakasLTsART~AnaiYcpPqlQa~lDLqSGIlha~ekDykTafSYFyEAfEgf~s~~~~v 246 (411)
T KOG1463|consen 167 LVEVHLLESKAYHALRNLPKAKASLTSARTTANAIYCPPQLQATLDLQSGILHAAEKDYKTAFSYFYEAFEGFDSLDDDV 246 (411)
T ss_pred eeeehhhhhHHHHHHhcchhHHHHHHHHHHhhcccccCHHHHHHHHHhccceeecccccchHHHHHHHHHccccccCCcH
Confidence 23456667788888899999888887765431 211 22233346667777899999999999987632 223
Q ss_pred HHH---HHHHHHHHHcCCHHHH--HHHHHHHHHhCCCCHHHHHHHHHHHHH--cCCHHHHHHHHHHHHhhCCC
Q 003891 236 QSL---NNLGVVYTVQGKMDAA--AEMIEKAIAANPTYAEAYNNLGVLYRD--AGSISLAIDAYEQCLKIDPD 301 (788)
Q Consensus 236 ~~~---~~la~~~~~~g~~~eA--~~~l~kal~~~p~~~~~~~~la~~~~~--~g~~~eA~~~~~~al~l~p~ 301 (788)
.+. -.+-.+-...+..++- +-.-+.+++....+.++....+..+.+ +.+|+.|+.-|+.-+..+|=
T Consensus 247 ~A~~sLKYMlLcKIMln~~ddv~~lls~K~~l~y~g~~i~AmkavAeA~~nRSLkdF~~AL~~yk~eL~~D~i 319 (411)
T KOG1463|consen 247 KALTSLKYMLLCKIMLNLPDDVAALLSAKLALKYAGRDIDAMKAVAEAFGNRSLKDFEKALADYKKELAEDPI 319 (411)
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHhhHHHHhccCcchHHHHHHHHHhcCCcHHHHHHHHHHhHHHHhcChH
Confidence 332 2333333445555543 334455666666677888888888754 56788999988888877663
No 448
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=94.85 E-value=1 Score=50.70 Aligned_cols=192 Identities=11% Similarity=0.079 Sum_probs=102.4
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHH---HHhhhhhhhcCCHH
Q 003891 74 YDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIAL---TDLGTKVKLEGDIN 150 (788)
Q Consensus 74 ~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l---~~lg~~~~~~g~~~ 150 (788)
.++|+++. +.+| ++..|..+|......-.++.|...|-++-.. +... ....+..++ .+.+.+-.--|+++
T Consensus 679 ledA~qfi----EdnP-HprLWrllAe~Al~Kl~l~tAE~AFVrc~dY-~Gik-~vkrl~~i~s~~~q~aei~~~~g~fe 751 (1189)
T KOG2041|consen 679 LEDAIQFI----EDNP-HPRLWRLLAEYALFKLALDTAEHAFVRCGDY-AGIK-LVKRLRTIHSKEQQRAEISAFYGEFE 751 (1189)
T ss_pred hHHHHHHH----hcCC-chHHHHHHHHHHHHHHhhhhHhhhhhhhccc-cchh-HHHHhhhhhhHHHHhHhHhhhhcchh
Confidence 45555443 3445 4899999999998888888888887765322 1111 111111111 11222333346888
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003891 151 QGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNP--HCAEACNNLGVIYKDRDNLDKAVECYQMAL 228 (788)
Q Consensus 151 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~~g~~~eA~~~~~~al 228 (788)
+|.+.|-.+-..+ ....++.+.|+|-...++++..-.-.. ....++.++|..+..+..|++|.++|.+.-
T Consensus 752 eaek~yld~drrD--------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~ 823 (1189)
T KOG2041|consen 752 EAEKLYLDADRRD--------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCG 823 (1189)
T ss_pred Hhhhhhhccchhh--------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 8888775442211 112344556666666555554322111 124577788888888888888888877642
Q ss_pred hhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 003891 229 SIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAY 292 (788)
Q Consensus 229 ~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~~eA~~~~ 292 (788)
. .-++..+++...+|++-. .....-|++...+-.+|..+...|.-++|.+.|
T Consensus 824 ~--------~e~~~ecly~le~f~~LE----~la~~Lpe~s~llp~~a~mf~svGMC~qAV~a~ 875 (1189)
T KOG2041|consen 824 D--------TENQIECLYRLELFGELE----VLARTLPEDSELLPVMADMFTSVGMCDQAVEAY 875 (1189)
T ss_pred c--------hHhHHHHHHHHHhhhhHH----HHHHhcCcccchHHHHHHHHHhhchHHHHHHHH
Confidence 2 123444555555544432 222223444444555555555555555555444
No 449
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=94.82 E-value=0.25 Score=53.63 Aligned_cols=90 Identities=12% Similarity=0.074 Sum_probs=0.0
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhhC
Q 003891 221 VECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGS-ISLAIDAYEQCLKID 299 (788)
Q Consensus 221 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~-~~eA~~~~~~al~l~ 299 (788)
...|+.++...+.+...|........+.+.+.+-...|.+++..+|++++.|..-|.-.+.-+. .+.|...|.++++.+
T Consensus 91 v~lyr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR~n 170 (568)
T KOG2396|consen 91 VFLYRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLRFN 170 (568)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhhcC
Q ss_pred CCChhhHHhHH
Q 003891 300 PDSRNAGQNRL 310 (788)
Q Consensus 300 p~~~~a~~~~l 310 (788)
|+++..+..+.
T Consensus 171 pdsp~Lw~eyf 181 (568)
T KOG2396|consen 171 PDSPKLWKEYF 181 (568)
T ss_pred CCChHHHHHHH
No 450
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=94.80 E-value=0.54 Score=43.85 Aligned_cols=97 Identities=13% Similarity=0.058 Sum_probs=74.6
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC
Q 003891 26 VLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNR 105 (788)
Q Consensus 26 ~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~ 105 (788)
.+......-...++.+++...+...--+.|+.++.-..-|.++...|++.+|+..++.+.+..|..+.+--.++.|+..+
T Consensus 12 gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~ 91 (160)
T PF09613_consen 12 GLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYAL 91 (160)
T ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHc
Confidence 35555566677788888888888888888999888888899999999999999999998888888888888888888888
Q ss_pred CCHHHHHHHHHHHHhhCC
Q 003891 106 GDLESAIACYERCLAVSP 123 (788)
Q Consensus 106 g~~~~A~~~~~~al~~~p 123 (788)
++.+ =..+-+++++..+
T Consensus 92 ~D~~-Wr~~A~evle~~~ 108 (160)
T PF09613_consen 92 GDPS-WRRYADEVLESGA 108 (160)
T ss_pred CChH-HHHHHHHHHhcCC
Confidence 7743 2223344444443
No 451
>PF04101 Glyco_tran_28_C: Glycosyltransferase family 28 C-terminal domain; InterPro: IPR007235 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC). Structural analysis suggests the C-terminal domain contains the UDP-GlcNAc binding site.; GO: 0016758 transferase activity, transferring hexosyl groups, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2KS6_A 2JZC_A 1NLM_B 1F0K_B.
Probab=94.73 E-value=0.038 Score=52.95 Aligned_cols=93 Identities=19% Similarity=0.251 Sum_probs=58.9
Q ss_pred CcEEEcCCcCCcHHHHHhcccccEeecCCCC-CCchhHHHHhhhCCceeecCCCcc---CccchhHHHhhhCCccccc--
Q 003891 586 LRVDLLPLILLNHDHMQAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVH---AHNVGVSLLTKVGLKHLIA-- 659 (788)
Q Consensus 586 ~rv~~~~~~~~~~~~~~~~~~~Dv~Ld~~~~-~g~~t~~eal~~GvPvvt~~g~~~---~~r~~~~~l~~~gl~~~ia-- 659 (788)
.+|.+.+..++ +..++..+|+++ . +|+.|+.|++++|+|.|..+-... ....-+..+...|....+.
T Consensus 55 ~~v~~~~~~~~---m~~~m~~aDlvI----s~aG~~Ti~E~l~~g~P~I~ip~~~~~~~~q~~na~~~~~~g~~~~~~~~ 127 (167)
T PF04101_consen 55 PNVKVFGFVDN---MAELMAAADLVI----SHAGAGTIAEALALGKPAIVIPLPGAADNHQEENAKELAKKGAAIMLDES 127 (167)
T ss_dssp CCCEEECSSSS---HHHHHHHHSEEE----ECS-CHHHHHHHHCT--EEEE--TTT-T-CHHHHHHHHHHCCCCCCSECC
T ss_pred CcEEEEechhh---HHHHHHHcCEEE----eCCCccHHHHHHHcCCCeeccCCCCcchHHHHHHHHHHHHcCCccccCcc
Confidence 57888888664 445555599998 5 667899999999999888775541 2333445566666654442
Q ss_pred -CCHHHHHHHHHHHhcCHHHHHHHHHH
Q 003891 660 -KNEDEYVQLALQLASDVTALANLRMS 685 (788)
Q Consensus 660 -~~~~~y~~~a~~l~~d~~~~~~~r~~ 685 (788)
.+++...+....+..++..+..+.+.
T Consensus 128 ~~~~~~L~~~i~~l~~~~~~~~~~~~~ 154 (167)
T PF04101_consen 128 ELNPEELAEAIEELLSDPEKLKEMAKA 154 (167)
T ss_dssp C-SCCCHHHHHHCHCCCHH-SHHHCCC
T ss_pred cCCHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 23667788888888888775555444
No 452
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=94.68 E-value=0.28 Score=42.50 Aligned_cols=46 Identities=15% Similarity=0.205 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 003891 253 AAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKI 298 (788)
Q Consensus 253 eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l 298 (788)
.+++.+.++..+.|..+..++.+|.-+.....|+++..-.++++.+
T Consensus 62 ~sve~~s~a~~Lsp~~A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv 107 (111)
T PF04781_consen 62 GSVECFSRAVELSPDSAHSLFELASQLGSVKYYKKAVKKAKRGLSV 107 (111)
T ss_pred HhHHHHHHHhccChhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence 4567777777777777777777777666666667777666666654
No 453
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.65 E-value=1.8 Score=40.64 Aligned_cols=115 Identities=10% Similarity=0.001 Sum_probs=46.7
Q ss_pred CHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC--C--HHHHHHHHHHHHHcCCHHHHH
Q 003891 148 DINQGVAYYKKALYYNWHYA--DAMYNLGVAYGEMLKFDMAIVFYELAFHFNPH--C--AEACNNLGVIYKDRDNLDKAV 221 (788)
Q Consensus 148 ~~~~A~~~~~~al~~~p~~~--~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~--~~~~~~la~~~~~~g~~~eA~ 221 (788)
..++|+..|...-+..-... -+.+..+.+..+.|+...|+..|.++-...+- - ..+...-+.++...|.|++-.
T Consensus 73 k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy~dV~ 152 (221)
T COG4649 73 KTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSYDDVS 152 (221)
T ss_pred CchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccHHHHH
Confidence 44444444444443322221 13344455555555555555555554433221 1 112233344444445444443
Q ss_pred HHHHHHH-hhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003891 222 ECYQMAL-SIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAI 262 (788)
Q Consensus 222 ~~~~~al-~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal 262 (788)
...+..- ..+|-...+.-.||..-.+.|++.+|.++|++..
T Consensus 153 srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia 194 (221)
T COG4649 153 SRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIA 194 (221)
T ss_pred HHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHH
Confidence 3333211 1122222233344444444444444444444443
No 454
>PRK10941 hypothetical protein; Provisional
Probab=94.64 E-value=0.19 Score=51.87 Aligned_cols=70 Identities=14% Similarity=0.212 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhhH
Q 003891 237 SLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAG 306 (788)
Q Consensus 237 ~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~a~ 306 (788)
.+.++-.+|.+.++++.|+.+.+..+.+.|+++.-+...|.+|.++|.+..|..-++..++..|+++.+.
T Consensus 183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~ 252 (269)
T PRK10941 183 LLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISE 252 (269)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHH
Confidence 4556667777888888888888888888888887777888888888888888888888888888777664
No 455
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=94.60 E-value=0.16 Score=37.87 Aligned_cols=32 Identities=19% Similarity=0.188 Sum_probs=12.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 003891 62 YNLGVVYSELMQYDTALGCYEKAALERPMYAE 93 (788)
Q Consensus 62 ~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~ 93 (788)
+.+|..++++|+|++|..+.+.+++..|++.+
T Consensus 5 Y~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Q 36 (53)
T PF14853_consen 5 YYLAIGHYKLGEYEKARRYCDALLEIEPDNRQ 36 (53)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHH
Confidence 33444444444444444444444444444333
No 456
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=94.55 E-value=0.6 Score=43.57 Aligned_cols=83 Identities=16% Similarity=0.128 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 003891 203 ACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDA 282 (788)
Q Consensus 203 ~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~ 282 (788)
.+..+...-...++.+++...+.-.--+.|..++.-..-|+++...|++.+|+..++......|..+.+--.++.|+..+
T Consensus 12 gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~ 91 (160)
T PF09613_consen 12 GLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYAL 91 (160)
T ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHc
Confidence 33444444455566666666666666666666666666666667777777777777766666666666666666666666
Q ss_pred CCH
Q 003891 283 GSI 285 (788)
Q Consensus 283 g~~ 285 (788)
|+.
T Consensus 92 ~D~ 94 (160)
T PF09613_consen 92 GDP 94 (160)
T ss_pred CCh
Confidence 664
No 457
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=94.44 E-value=7.4 Score=40.64 Aligned_cols=48 Identities=13% Similarity=0.112 Sum_probs=28.0
Q ss_pred HHHHHHHHHHc--CCC-ChhhHHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 003891 2 LVASYHKALSA--DPS-YKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYE 49 (788)
Q Consensus 2 Ai~~~~kaL~~--~P~-~~~a~~~la~~l~~lg~~~~~~g~~~~A~~~~~~ 49 (788)
++..|.+.+.. -|. +.......-.....+|..+.+.|+.++-......
T Consensus 23 ~~~il~~vl~~~~~~~s~e~~i~~kE~~Ilel~~ll~~~~~~~~lr~li~~ 73 (411)
T KOG1463|consen 23 AINILKSVLNKAQGASSDEARIKEKEQSILELGDLLAKEGDAEELRDLITS 73 (411)
T ss_pred hHHHHHHHhhhhccccCCHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHH
Confidence 45566666653 222 2233333445567888999999988765544433
No 458
>COG4370 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.44 E-value=0.038 Score=55.84 Aligned_cols=118 Identities=16% Similarity=0.174 Sum_probs=85.6
Q ss_pred cCCCCCcEEEcCCcCCcHHHHHhcccccEeecCCCCCCchhHHHHhhhCCceeecCCC--ccCccchhHHHhhhCCcccc
Q 003891 581 LGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGS--VHAHNVGVSLLTKVGLKHLI 658 (788)
Q Consensus 581 ~gi~~~rv~~~~~~~~~~~~~~~~~~~Dv~Ld~~~~~g~~t~~eal~~GvPvvt~~g~--~~~~r~~~~~l~~~gl~~~i 658 (788)
+|-+.-+++|. ++.|-.+++.+|+.| =..||.+=++.-.|+|||..+|. .+.-=.+..-.+-+|+.=..
T Consensus 291 ~~kdnc~l~ls-----qqsfadiLH~adaal----gmAGTAtEQavGLGkPvi~fPg~GPQy~pgFA~rQ~rLLG~sltl 361 (412)
T COG4370 291 FGKDNCSLWLS-----QQSFADILHAADAAL----GMAGTATEQAVGLGKPVIGFPGQGPQYNPGFAERQQRLLGASLTL 361 (412)
T ss_pred hccCceEEEEe-----HHHHHHHHHHHHHHH----HhccchHHHhhccCCceeecCCCCCCcChHHHHHHHHHhcceeee
Confidence 34443455542 567778888899987 46789999999999999999974 22222233334667777655
Q ss_pred cCCHHHHHHHHHH-HhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHH
Q 003891 659 AKNEDEYVQLALQ-LASDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRNMW 713 (788)
Q Consensus 659 a~~~~~y~~~a~~-l~~d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ 713 (788)
...++.-.+.+++ +..|++.+.++|.+-++|+.+ .+.++++.+...+||
T Consensus 362 v~~~aq~a~~~~q~ll~dp~r~~air~nGqrRiGq------aGaa~rIAe~l~e~a 411 (412)
T COG4370 362 VRPEAQAAAQAVQELLGDPQRLTAIRHNGQRRIGQ------AGAARRIAEELGEMA 411 (412)
T ss_pred cCCchhhHHHHHHHHhcChHHHHHHHhcchhhccC------cchHHHHHHHHHHhc
Confidence 6666666777777 999999999999998888753 457778887777776
No 459
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=94.36 E-value=0.065 Score=34.33 Aligned_cols=31 Identities=39% Similarity=0.673 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 003891 271 AYNNLGVLYRDAGSISLAIDAYEQCLKIDPD 301 (788)
Q Consensus 271 ~~~~la~~~~~~g~~~eA~~~~~~al~l~p~ 301 (788)
++..+|.++..+|++++|...++++++++|+
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 4566677777777777777777777666654
No 460
>PRK10941 hypothetical protein; Provisional
Probab=94.36 E-value=0.56 Score=48.39 Aligned_cols=70 Identities=19% Similarity=0.103 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHH
Q 003891 60 AYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAK 129 (788)
Q Consensus 60 ~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 129 (788)
.+.++-.+|.+.++++.|+.+.+..+...|+++.-+...|.+|.+.|.+..|..-++..++..|+++.+.
T Consensus 183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~ 252 (269)
T PRK10941 183 LLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISE 252 (269)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHH
Confidence 3455566677777777777777777777777777777777777777777777777777777777766543
No 461
>TIGR02201 heptsyl_trn_III lipopolysaccharide heptosyltransferase III, putative. This family consists of examples of the putative ADP-heptose:LPS heptosyltransferase III, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria. This enzyme may be less widely distributed than heptosyltransferases I and II.
Probab=94.20 E-value=0.88 Score=49.27 Aligned_cols=112 Identities=12% Similarity=0.045 Sum_probs=62.3
Q ss_pred CCCeEEEecCC-CCcCCH-HHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCc-EEEcCCcCCcHHH
Q 003891 524 NGFITFGSFNN-LAKITP-KVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLR-VDLLPLILLNHDH 600 (788)
Q Consensus 524 ~~~~~f~~~~~-~~K~~~-~~~~~~~~il~~~p~~~l~l~~~~~~~~~~~~~l~~~~~~~gi~~~r-v~~~~~~~~~~~~ 600 (788)
...|+++...+ ..|.=| +-+...++.+.. .+..++|.|++.. ..++.. +.+.+. ....+ +.+.|... -.+.
T Consensus 181 ~~~i~i~p~a~~~~K~Wp~e~~~~l~~~l~~-~~~~ivl~g~p~~--~e~~~~-~~i~~~-~~~~~~~~l~g~~s-L~el 254 (344)
T TIGR02201 181 QNYIVIQPTSRWFFKCWDNDRFSALIDALHA-RGYEVVLTSGPDK--DELAMV-NEIAQG-CQTPRVTSLAGKLT-LPQL 254 (344)
T ss_pred CCEEEEeCCCCccccCCCHHHHHHHHHHHHh-CCCeEEEecCCCH--HHHHHH-HHHHhh-CCCCcccccCCCCC-HHHH
Confidence 34555655443 334333 333333333322 3567788776521 122222 223222 22233 44677765 6899
Q ss_pred HHhcccccEeecCCCCCCchhHHHHhhhCCceeecCCCccCccch
Q 003891 601 MQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVG 645 (788)
Q Consensus 601 ~~~~~~~Dv~Ld~~~~~g~~t~~eal~~GvPvvt~~g~~~~~r~~ 645 (788)
.+.++.||+++.. -+| .+==|-++|+|+|++-|.+...+++
T Consensus 255 ~ali~~a~l~Vs~--DSG--p~HlAaA~g~p~v~Lfgpt~p~~~~ 295 (344)
T TIGR02201 255 AALIDHARLFIGV--DSV--PMHMAAALGTPLVALFGPSKHIFWR 295 (344)
T ss_pred HHHHHhCCEEEec--CCH--HHHHHHHcCCCEEEEECCCCccccc
Confidence 9999999999832 222 3334778999999999987666554
No 462
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=94.18 E-value=11 Score=41.58 Aligned_cols=228 Identities=11% Similarity=0.032 Sum_probs=130.1
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHH
Q 003891 54 DPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMA 133 (788)
Q Consensus 54 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 133 (788)
.|-+...+..+-.++.....+.-....+.+++.... +..+++.++.+|... ..++-...+++..+.+-++...-..++
T Consensus 62 ~~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e-~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa 139 (711)
T COG1747 62 QLLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGE-SKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELA 139 (711)
T ss_pred ccccchHHHHHHHHhccchHHHHHHHHHHHHHHhcc-hHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHH
Confidence 445555666666666666666777777777777653 467788888888887 556667777887777766654333333
Q ss_pred HHHHHhhhhhhhcCCHHHHHHHHHHHHHhC-CCC--H---HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-CHH-HHH
Q 003891 134 IALTDLGTKVKLEGDINQGVAYYKKALYYN-WHY--A---DAMYNLGVAYGEMLKFDMAIVFYELAFHFNPH-CAE-ACN 205 (788)
Q Consensus 134 ~~l~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~--~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~-~~~ 205 (788)
..| .+ .+.+++..+|.+++... |.. . +.|..+-. +--.+.+.-+....+.-..... ... ++.
T Consensus 140 ~~y-------Ek-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~--~i~dD~D~fl~l~~kiqt~lg~~~~~Vl~q 209 (711)
T COG1747 140 DKY-------EK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPE--LIGDDKDFFLRLQKKIQTKLGEGRGSVLMQ 209 (711)
T ss_pred HHH-------HH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHH--hccccHHHHHHHHHHHHHhhccchHHHHHH
Confidence 332 22 57778888888877542 211 1 12222111 1122333333333333222211 122 222
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Q 003891 206 NLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSI 285 (788)
Q Consensus 206 ~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~ 285 (788)
.+-.-|....++++|+..+...++.+..+..+.-++..-+...-+ +-.+.+-|.....+-..-.++
T Consensus 210 dv~~~Ys~~eN~~eai~Ilk~il~~d~k~~~ar~~~i~~lRd~y~--------------~~~~~e~yl~~s~i~~~~rnf 275 (711)
T COG1747 210 DVYKKYSENENWTEAIRILKHILEHDEKDVWARKEIIENLRDKYR--------------GHSQLEEYLKISNISQSGRNF 275 (711)
T ss_pred HHHHHhccccCHHHHHHHHHHHhhhcchhhhHHHHHHHHHHHHhc--------------cchhHHHHHHhcchhhccccH
Confidence 233455667789999999998888887776666555544332110 111223344444444455678
Q ss_pred HHHHHHHHHHHhhCCCChhhHH
Q 003891 286 SLAIDAYEQCLKIDPDSRNAGQ 307 (788)
Q Consensus 286 ~eA~~~~~~al~l~p~~~~a~~ 307 (788)
.+++.-|++.+..+..|--.++
T Consensus 276 ~~~l~dFek~m~f~eGnFVfHq 297 (711)
T COG1747 276 FEALNDFEKLMHFDEGNFVFHQ 297 (711)
T ss_pred HHHHHHHHHHheeccCceEEec
Confidence 8888899999888877655443
No 463
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=94.17 E-value=0.43 Score=40.25 Aligned_cols=64 Identities=16% Similarity=0.238 Sum_probs=34.7
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCC
Q 003891 221 VECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTY--AEAYNNLGVLYRDAGS 284 (788)
Q Consensus 221 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~--~~~~~~la~~~~~~g~ 284 (788)
+..+++.++.+|++..+.+.+|..+...|++++|++.+-.+++.+++. ..+...+-.++..+|.
T Consensus 8 ~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~ 73 (90)
T PF14561_consen 8 IAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGP 73 (90)
T ss_dssp HHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-T
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCC
Confidence 445566666666666666666666666666666666666666665543 3333344444444443
No 464
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=94.17 E-value=0.41 Score=47.70 Aligned_cols=54 Identities=20% Similarity=0.137 Sum_probs=28.1
Q ss_pred CCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHH
Q 003891 105 RGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKK 158 (788)
Q Consensus 105 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~ 158 (788)
...+++|++.|.-|+-...-.......+|.++..++.+|...++.++...++++
T Consensus 90 ~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~ 143 (214)
T PF09986_consen 90 ERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRK 143 (214)
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHH
Confidence 446777777777766432111111124456666666666666664444333333
No 465
>PF01075 Glyco_transf_9: Glycosyltransferase family 9 (heptosyltransferase); InterPro: IPR002201 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 9 GT9 from CAZY comprises enzymes with two known activity; lipopolysaccharide N-acetylglucosaminyltransferase (2.4.1.56 from EC), heptosyltransferase (2.4 from EC). Heptosyltransferase I is thought to add L-glycero-D-manno-heptose to the inner 3-deoxy-D-manno-octulosonic acid (Kdo) residue of the lipopolysaccharide core []. Heptosyltransferase II is a glycosyltransferase involved in the synthesis of the inner core region of lipopolysaccharide []. Lipopolysaccharide is a major component of the outer leaflet of the outer membrane in Gram-negative bacteria. It is composed of three domains; lipid A, Core oligosaccharide and the O-antigen. These enzymes transfer heptose to the lipopolysaccharide core [].; GO: 0016757 transferase activity, transferring glycosyl groups, 0008152 metabolic process; PDB: 1PSW_A 2H1F_A 2GT1_A 3TOV_A 2H1H_A.
Probab=94.11 E-value=0.086 Score=54.09 Aligned_cols=206 Identities=14% Similarity=0.150 Sum_probs=89.5
Q ss_pred HHHHHHHhCCCcEEEeCCCCCCCCccccccc-CCCCeEEecccCCCCCCCCCccEEEecCCCCCcCccCCC--ccceEEc
Q 003891 424 KVAAMVREDKIDILVELTGHTANNKLGMMAC-QPAPVQVTWIGYPNTTGLPTIDYRITDSLADPPETKQKH--VEELIRL 500 (788)
Q Consensus 424 ~~a~~i~~d~idilvdl~g~t~~~~~~~~a~-r~Apvq~~~~g~~~ttg~~~~Dy~i~d~~~~p~~~~~~~--~e~l~~l 500 (788)
.+.+.||+.+.|++||+.+.. +..+++. --||.-+.+-+... .+.-..+..+.... .+...+.++ -+.++-+
T Consensus 3 ~l~~~Lr~~~yD~vid~~~~~---~s~~l~~~~~a~~riG~~~~~~-~~~~~~~~~~~~~~-~~~~v~~~~~ll~~~~~~ 77 (247)
T PF01075_consen 3 ALIKKLRKEKYDLVIDLQGSF---RSALLARLSGAKIRIGFGKDDR-GRSLFYNRKVDRPP-NKHMVDRYLSLLSELLGI 77 (247)
T ss_dssp HHHHHHCTSB-SEEEE-S-SH---HHHHHTCCCSBSEEEEE-TTTS-GGGGGESEEE-TTS-SSSHHHHHHHHHHHHHTS
T ss_pred HHHHHHhCCCCCEEEECCCCc---cHHHHHHHHhhccccccCccch-hhhhcccccccccc-cchHHHHHHHHHHHhcCC
Confidence 478899999999999997753 3333332 45677777644433 11112222222211 111111110 1111111
Q ss_pred CCCcc--ccCCCCCC-CCCCCCC-CCCCCCeEEEecCCC-CcC-CHHHHHHHHHHHhHcCCcEEEEecCCCCCHHH-HHH
Q 003891 501 PECFL--CYTPSPEA-GPVCPTP-ALTNGFITFGSFNNL-AKI-TPKVLQVWARILCAVPNSRLVVKCKPFCCDSV-RHR 573 (788)
Q Consensus 501 p~~~~--~~~~~~~~-~~~~~~~-~~~~~~~~f~~~~~~-~K~-~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~-~~~ 573 (788)
|.... .+.++.+. ....... ......|+|.-.++. .|. ..+.+..+++-+.... ..++|.|++ .. ...
T Consensus 78 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~i~~~a~~~~k~wp~e~~~~l~~~l~~~~-~~vvl~g~~----~~~~~~ 152 (247)
T PF01075_consen 78 PYPSTKPELPLSEEEEAAARELLKSKDKPYIGINPGASWPSKRWPAEKWAELIERLKERG-YRVVLLGGP----EEQEKE 152 (247)
T ss_dssp -SSSSSS----THHHHTTHHTTTT-TTSSEEEEE---SSGGGS--HHHHHHHHHHHCCCT--EEEE--SS----HHHHHH
T ss_pred CCCCCCcCCcCCHHHHHHHHHhhhhccCCeEEEeecCCCccccCCHHHHHHHHHHHHhhC-ceEEEEccc----hHHHHH
Confidence 11100 00000000 0000111 123344545443333 444 3344444444444333 567777766 22 122
Q ss_pred HHHHHHHcCCCCCcEEEcCCcCCcHHHHHhcccccEeecCCCCCCchhHHHHhhhCCceeecCCCccCccch
Q 003891 574 FLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVG 645 (788)
Q Consensus 574 l~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~~Dv~Ld~~~~~g~~t~~eal~~GvPvvt~~g~~~~~r~~ 645 (788)
..+.+.+ +.....+.+.+... -.+..+....||+++ .+-+-.+==|-++|+|+|++-|.+...+.+
T Consensus 153 ~~~~~~~-~~~~~~~~~~~~~~-l~e~~ali~~a~~~I----~~Dtg~~HlA~a~~~p~v~lfg~t~~~~~~ 218 (247)
T PF01075_consen 153 IADQIAA-GLQNPVINLAGKTS-LRELAALISRADLVI----GNDTGPMHLAAALGTPTVALFGPTNPERWG 218 (247)
T ss_dssp HHHHHHT-THTTTTEEETTTS--HHHHHHHHHTSSEEE----EESSHHHHHHHHTT--EEEEESSS-HHHHS
T ss_pred HHHHHHH-hcccceEeecCCCC-HHHHHHHHhcCCEEE----ecCChHHHHHHHHhCCEEEEecCCCHHHhC
Confidence 2222222 33323577778765 789999999999997 222223334677999999999988766655
No 466
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=94.08 E-value=0.083 Score=51.49 Aligned_cols=66 Identities=29% Similarity=0.504 Sum_probs=58.7
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhhHHh
Q 003891 243 VVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQN 308 (788)
Q Consensus 243 ~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~a~~~ 308 (788)
....+.++.+.|.+.|.+++.+.|+....|+.+|....+.|+++.|.+.|++.++++|++.....-
T Consensus 3 ~~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~~gaa~ 68 (287)
T COG4976 3 YMLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDHGGAAL 68 (287)
T ss_pred chhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccccchhh
Confidence 345678899999999999999999999999999999999999999999999999999998765443
No 467
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=94.05 E-value=0.45 Score=57.70 Aligned_cols=162 Identities=20% Similarity=0.197 Sum_probs=122.1
Q ss_pred HHhhhhhhhcCCHHHHHH------HHHHH-HHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--------CCCCH
Q 003891 137 TDLGTKVKLEGDINQGVA------YYKKA-LYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHF--------NPHCA 201 (788)
Q Consensus 137 ~~lg~~~~~~g~~~~A~~------~~~~a-l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~~~ 201 (788)
...|......+.+.+|.+ ++... -.+.|+....+..++.++...+++++|+..-.++.-+ .|+..
T Consensus 936 ~e~gq~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~ 1015 (1236)
T KOG1839|consen 936 PEQGQEALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTK 1015 (1236)
T ss_pred hhhhhhhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHH
Confidence 334444455667776666 44422 2346777888999999999999999999988877654 34557
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------
Q 003891 202 EACNNLGVIYKDRDNLDKAVECYQMALSI--------KPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPT------ 267 (788)
Q Consensus 202 ~~~~~la~~~~~~g~~~eA~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~------ 267 (788)
..+.+++...+..++...|...+.++..+ .|.-.....+++.++...++++.|+.+++.|++.+..
T Consensus 1016 ~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~ 1095 (1236)
T KOG1839|consen 1016 LAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKE 1095 (1236)
T ss_pred HHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccc
Confidence 78889998888999999999999988775 3555567788899999999999999999999986422
Q ss_pred --CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 003891 268 --YAEAYNNLGVLYRDAGSISLAIDAYEQCLKI 298 (788)
Q Consensus 268 --~~~~~~~la~~~~~~g~~~eA~~~~~~al~l 298 (788)
....+..++.++..++++..|....+....+
T Consensus 1096 l~~~~~~~~~a~l~~s~~dfr~al~~ek~t~~i 1128 (1236)
T KOG1839|consen 1096 LETALSYHALARLFESMKDFRNALEHEKVTYGI 1128 (1236)
T ss_pred hhhhhHHHHHHHHHhhhHHHHHHHHHHhhHHHH
Confidence 2455667788888888888777776666543
No 468
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=93.97 E-value=1.9 Score=37.70 Aligned_cols=99 Identities=16% Similarity=0.134 Sum_probs=72.9
Q ss_pred HHHHHHHH--HHHHHHcCChHHHHHHHHHHHHhCCC------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--
Q 003891 23 LAIVLTDL--GTSLKLAGNTQDGIQKYYEALKIDPH------------YAPAYYNLGVVYSELMQYDTALGCYEKAAL-- 86 (788)
Q Consensus 23 la~~l~~l--g~~~~~~g~~~~A~~~~~~al~~~p~------------~~~~~~~lg~~~~~~g~~~~A~~~~~kal~-- 86 (788)
.+..|..+ |...+..|.|++|...++++.+.... ++-++..|+..+..+|+|++++...++++.
T Consensus 6 Va~aY~aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YF 85 (144)
T PF12968_consen 6 VAMAYMALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYF 85 (144)
T ss_dssp HHHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHH
Confidence 34445544 44556779999999999999987422 255778899999999999999988888875
Q ss_pred -----hCCCC----HHHHHHHHHHHHHCCCHHHHHHHHHHHHhh
Q 003891 87 -----ERPMY----AEAYCNMGVIYKNRGDLESAIACYERCLAV 121 (788)
Q Consensus 87 -----~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 121 (788)
++.+. ..+.+..+..+...|+.++|+..|+.+-+.
T Consensus 86 NRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM 129 (144)
T PF12968_consen 86 NRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEM 129 (144)
T ss_dssp HHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred hhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 34443 345577888999999999999999988654
No 469
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.89 E-value=0.86 Score=50.95 Aligned_cols=104 Identities=21% Similarity=0.167 Sum_probs=86.9
Q ss_pred hHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 003891 19 AAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHY------APAYYNLGVVYSELMQYDTALGCYEKAALERPMYA 92 (788)
Q Consensus 19 a~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~ 92 (788)
....+-.++.+.+...++..+|..+++.|...+..-|.+ +.....++.||..+.+.+.|.+++++|-+.+|.++
T Consensus 349 ~~~~iH~iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~ 428 (872)
T KOG4814|consen 349 AISCIHTLLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSP 428 (872)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccH
Confidence 333455567778888889999999999999998876654 55677889999999999999999999999999998
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhC
Q 003891 93 EAYCNMGVIYKNRGDLESAIACYERCLAVS 122 (788)
Q Consensus 93 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 122 (788)
-.....-.+....++-++|+....+.....
T Consensus 429 l~q~~~~~~~~~E~~Se~AL~~~~~~~s~~ 458 (872)
T KOG4814|consen 429 LCQLLMLQSFLAEDKSEEALTCLQKIKSSE 458 (872)
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHHhhh
Confidence 888888888888999999999888776553
No 470
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=93.75 E-value=0.98 Score=39.47 Aligned_cols=62 Identities=13% Similarity=0.148 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH-------hCCCCHH----HHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 003891 237 SLNNLGVVYTVQGKMDAAAEMIEKAIA-------ANPTYAE----AYNNLGVLYRDAGSISLAIDAYEQCLKI 298 (788)
Q Consensus 237 ~~~~la~~~~~~g~~~eA~~~l~kal~-------~~p~~~~----~~~~la~~~~~~g~~~eA~~~~~~al~l 298 (788)
.+..|+..+..+|+|++++...++++. ++.+... +-++.+..+...|+.++|+..|+++-++
T Consensus 57 chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM 129 (144)
T PF12968_consen 57 CHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEM 129 (144)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 444555556666666655555554443 3444333 3456777788888888888888877653
No 471
>PRK14089 ipid-A-disaccharide synthase; Provisional
Probab=93.69 E-value=0.36 Score=51.96 Aligned_cols=78 Identities=15% Similarity=0.174 Sum_probs=48.3
Q ss_pred CcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHHHHhcccccEeecCCC
Q 003891 536 AKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFP 615 (788)
Q Consensus 536 ~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~~~~l~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~~Dv~Ld~~~ 615 (788)
.++.|.++++..++.+.. .++++.+.. . .+.+++..... ..+.+.+ +-...+..||++|
T Consensus 182 ~~llP~~~~aa~~L~~~~--~~~~i~~a~----~-~~~i~~~~~~~----~~~~~~~------~~~~~m~~aDlal---- 240 (347)
T PRK14089 182 KRLMPIFKELAKKLEGKE--KILVVPSFF----K-GKDLKEIYGDI----SEFEISY------DTHKALLEAEFAF---- 240 (347)
T ss_pred HHHHHHHHHHHHHHhhcC--cEEEEeCCC----c-HHHHHHHHhcC----CCcEEec------cHHHHHHhhhHHH----
Confidence 356677788877776653 455554432 1 14444444321 1233433 1234567799999
Q ss_pred CCCchhHHHHhhhCCceee
Q 003891 616 YAGTTTTCESLYMGVPCVT 634 (788)
Q Consensus 616 ~~g~~t~~eal~~GvPvvt 634 (788)
...||+|+|++.+|+|.|.
T Consensus 241 ~~SGT~TLE~al~g~P~Vv 259 (347)
T PRK14089 241 ICSGTATLEAALIGTPFVL 259 (347)
T ss_pred hcCcHHHHHHHHhCCCEEE
Confidence 6678888899999999887
No 472
>PF05159 Capsule_synth: Capsule polysaccharide biosynthesis protein; InterPro: IPR007833 This family includes export proteins involved in capsule polysaccharide biosynthesis, such as KpsS P42218 from SWISSPROT and LipB P57038 from SWISSPROT. Capsule polysaccharide modification protein lipB/A is involved in the phospholipid modification of the capsular polysaccharide and is a strong requirement for its translocation to the cell surface. The capsule of Neisseria meningitidis serogroup B and of other meningococcal serogroups and other Gram-negative bacterial pathogens, are anchored in the outer membrane through a 1,2-diacylglycerol moiety. The lipA and lipB genes are located on the 3' end of the ctr operon. lipA and lipB do not encode proteins responsible for diacylglycerophosphatidic acid substitution of the meningococcal capsule polymer, but they are required for proper translocation and surface expression of the lipidated polymer []. KpsS is an unusual sulphate-modified form of the capsular polysaccharide in Rhizobium loti (Mesorhizobium loti). Many plants, including R. loti, enter into symbiotic relationships with bacteria that allow survival in nutrient-limiting environments. KpsS functions as a fucosyl sulphotransferase in vitro. The kpsS gene product shares no significant amino acid similarity with previously identified sulphotransferases []. Sulphated cell surface polysaccharides are required for optimum nodule formation but limit growth rate and nodule colonisation in M. loti [].; GO: 0000271 polysaccharide biosynthetic process, 0015774 polysaccharide transport
Probab=93.69 E-value=0.2 Score=52.19 Aligned_cols=91 Identities=21% Similarity=0.178 Sum_probs=57.7
Q ss_pred CCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHc-CCCCCcEEEcCCcCCcHHHHHhcccccEeecCCCC
Q 003891 538 ITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQL-GLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPY 616 (788)
Q Consensus 538 ~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~~~~l~~~~~~~-gi~~~rv~~~~~~~~~~~~~~~~~~~Dv~Ld~~~~ 616 (788)
....+.++...+++..|+..|+++-.|........ +.+.+. +.. .++.+..... ..+ ++..||.++ .
T Consensus 138 ~~~~~~~~l~~~~~~~p~~~lvvK~HP~~~~~~~~---~~~~~~~~~~-~~~~~~~~~~-~~~---Ll~~s~~Vv----t 205 (269)
T PF05159_consen 138 SQADFLDMLESFAKENPDAKLVVKPHPDERGGNKY---SYLEELPNLP-NVVIIDDDVN-LYE---LLEQSDAVV----T 205 (269)
T ss_pred cHhHHHHHHHHHHHHCCCCEEEEEECchhhCCCCh---hHhhhhhcCC-CeEEECCCCC-HHH---HHHhCCEEE----E
Confidence 44567788888889999999999876621111111 222222 222 4454444433 344 445588887 5
Q ss_pred CCchhHHHHhhhCCceeecCCCcc
Q 003891 617 AGTTTTCESLYMGVPCVTMAGSVH 640 (788)
Q Consensus 617 ~g~~t~~eal~~GvPvvt~~g~~~ 640 (788)
-.+|+.+|||.+|.||||+.-..+
T Consensus 206 inStvGlEAll~gkpVi~~G~~~Y 229 (269)
T PF05159_consen 206 INSTVGLEALLHGKPVIVFGRAFY 229 (269)
T ss_pred ECCHHHHHHHHcCCceEEecCccc
Confidence 678899999999999999544433
No 473
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=93.61 E-value=0.65 Score=46.25 Aligned_cols=67 Identities=21% Similarity=0.268 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHcCCHH-------HHHHHHHHHHHhCC------CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCC
Q 003891 58 APAYYNLGVVYSELMQYD-------TALGCYEKAALERP------MYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPN 124 (788)
Q Consensus 58 ~~~~~~lg~~~~~~g~~~-------~A~~~~~kal~~~p------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 124 (788)
+..+..+|.+|...|+.+ .|++.|+++++... +.....+.+|.++.+.|++++|.++|.+++.....
T Consensus 118 A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~ 197 (214)
T PF09986_consen 118 AGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKA 197 (214)
T ss_pred HHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCC
Confidence 456667777777777744 34444444444321 12457777888888888888888888888775433
No 474
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=93.57 E-value=0.83 Score=44.08 Aligned_cols=103 Identities=14% Similarity=0.043 Sum_probs=70.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHH
Q 003891 58 APAYYNLGVVYSELMQYDTALGCYEKAALERPM---YAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAI 134 (788)
Q Consensus 58 ~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 134 (788)
-.++..+|..|.+.|+.++|++.|.++.+.... ..+.+..+..+....+++.....+..++-....... .+.....
T Consensus 36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~-d~~~~nr 114 (177)
T PF10602_consen 36 RMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGG-DWERRNR 114 (177)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccc-hHHHHHH
Confidence 457889999999999999999999998775433 356778888899999999999999988876644321 1222222
Q ss_pred HHHHhhhhhhhcCCHHHHHHHHHHHHH
Q 003891 135 ALTDLGTKVKLEGDINQGVAYYKKALY 161 (788)
Q Consensus 135 ~l~~lg~~~~~~g~~~~A~~~~~~al~ 161 (788)
+....|..+...++|.+|.+.|-.+..
T Consensus 115 lk~~~gL~~l~~r~f~~AA~~fl~~~~ 141 (177)
T PF10602_consen 115 LKVYEGLANLAQRDFKEAAELFLDSLS 141 (177)
T ss_pred HHHHHHHHHHHhchHHHHHHHHHccCc
Confidence 222233334446677777666665543
No 475
>COG0763 LpxB Lipid A disaccharide synthetase [Cell envelope biogenesis, outer membrane]
Probab=93.55 E-value=0.72 Score=49.16 Aligned_cols=136 Identities=17% Similarity=0.229 Sum_probs=80.7
Q ss_pred CcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHHHHhcccccEeecCCC
Q 003891 536 AKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFP 615 (788)
Q Consensus 536 ~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~~~~l~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~~Dv~Ld~~~ 615 (788)
.+..|-++++..++..+.|+.++++-..+ ..-++++..+.......-.+++.. .+-...+..||+.|
T Consensus 203 ~rl~~~f~~a~~~l~~~~~~~~~vlp~~~----~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~a~~~aD~al---- 269 (381)
T COG0763 203 RRLLPPFVQAAQELKARYPDLKFVLPLVN----AKYRRIIEEALKWEVAGLSLILID-----GEKRKAFAAADAAL---- 269 (381)
T ss_pred HHHHHHHHHHHHHHHhhCCCceEEEecCc----HHHHHHHHHHhhccccCceEEecC-----chHHHHHHHhhHHH----
Confidence 56778889998888889999999996443 332344444333222111222222 23344566699998
Q ss_pred CCCchhHHHHhhhCCceeecCCCccCccchhHHH------hhhCCcccccC------------CHHHHHHHHHHHhcCHH
Q 003891 616 YAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLL------TKVGLKHLIAK------------NEDEYVQLALQLASDVT 677 (788)
Q Consensus 616 ~~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l------~~~gl~~~ia~------------~~~~y~~~a~~l~~d~~ 677 (788)
-..||.++|++.+|+|.|...--.. ++.-|. ...+||.+++. .++...+....|..|..
T Consensus 270 ~aSGT~tLE~aL~g~P~Vv~Yk~~~---it~~iak~lvk~~yisLpNIi~~~~ivPEliq~~~~pe~la~~l~~ll~~~~ 346 (381)
T COG0763 270 AASGTATLEAALAGTPMVVAYKVKP---ITYFIAKRLVKLPYVSLPNILAGREIVPELIQEDCTPENLARALEELLLNGD 346 (381)
T ss_pred HhccHHHHHHHHhCCCEEEEEeccH---HHHHHHHHhccCCcccchHHhcCCccchHHHhhhcCHHHHHHHHHHHhcChH
Confidence 5679999999999999775332111 111121 23455544433 46666666677777775
Q ss_pred HHHHHHHHHH
Q 003891 678 ALANLRMSLR 687 (788)
Q Consensus 678 ~~~~~r~~~~ 687 (788)
.++++.+..+
T Consensus 347 ~~~~~~~~~~ 356 (381)
T COG0763 347 RREALKEKFR 356 (381)
T ss_pred hHHHHHHHHH
Confidence 5555555443
No 476
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=93.54 E-value=3.6 Score=46.20 Aligned_cols=217 Identities=14% Similarity=0.100 Sum_probs=110.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh--------------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcH
Q 003891 61 YYNLGVVYSELMQYDTALGCYEKAALE--------------RPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFE 126 (788)
Q Consensus 61 ~~~lg~~~~~~g~~~~A~~~~~kal~~--------------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 126 (788)
|..++......=+++-|.+.|.++-.+ ....+ --..+|.++...|++.+|.+.|.+.=..+...
T Consensus 588 W~~LA~~ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P-~~iLlA~~~Ay~gKF~EAAklFk~~G~enRAl- 665 (1081)
T KOG1538|consen 588 WRELAMEALEALDFETARKAYIRVRDLRYLELISELEERKKRGETP-NDLLLADVFAYQGKFHEAAKLFKRSGHENRAL- 665 (1081)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCc-hHHHHHHHHHhhhhHHHHHHHHHHcCchhhHH-
Confidence 455555555555666666666554211 11111 12456777777888888888876532111100
Q ss_pred HHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHH----------HHH
Q 003891 127 IAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYY--NWHYADAMYNLGVAYGEMLKFDMAIVFYE----------LAF 194 (788)
Q Consensus 127 ~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~----------~al 194 (788)
+.+.. .-.+..+.-+...|.-++-....++-.+- +-+.+ ...+.++...|+.++|+...- -+-
T Consensus 666 EmyTD--lRMFD~aQE~~~~g~~~eKKmL~RKRA~WAr~~keP---kaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~r 740 (1081)
T KOG1538|consen 666 EMYTD--LRMFDYAQEFLGSGDPKEKKMLIRKRADWARNIKEP---KAAAEMLISAGEHVKAIEICGDHGWVDMLIDIAR 740 (1081)
T ss_pred HHHHH--HHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhcCCc---HHHHHHhhcccchhhhhhhhhcccHHHHHHHHHh
Confidence 00000 01122333333444544444444432221 11111 123556666777777765432 222
Q ss_pred hcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 003891 195 HFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNN 274 (788)
Q Consensus 195 ~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~ 274 (788)
+++....+.+..++..+.....+.-|.+.|++.-. ...+..++...+++++|....++--+.- ++.|+-
T Consensus 741 kld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD--------~ksiVqlHve~~~W~eAFalAe~hPe~~---~dVy~p 809 (1081)
T KOG1538|consen 741 KLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGD--------LKSLVQLHVETQRWDEAFALAEKHPEFK---DDVYMP 809 (1081)
T ss_pred hcchhhhhHHHHHHHHHhhccccchHHHHHHHhcc--------HHHHhhheeecccchHhHhhhhhCcccc---ccccch
Confidence 33444455555666666666666666666665422 1233445566777777776665543322 345666
Q ss_pred HHHHHHHcCCHHHHHHHHHHH
Q 003891 275 LGVLYRDAGSISLAIDAYEQC 295 (788)
Q Consensus 275 la~~~~~~g~~~eA~~~~~~a 295 (788)
.|+.+.+..+++||.+.|.+|
T Consensus 810 yaqwLAE~DrFeEAqkAfhkA 830 (1081)
T KOG1538|consen 810 YAQWLAENDRFEEAQKAFHKA 830 (1081)
T ss_pred HHHHhhhhhhHHHHHHHHHHh
Confidence 677777777777777766655
No 477
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=93.49 E-value=4.5 Score=43.28 Aligned_cols=61 Identities=26% Similarity=0.408 Sum_probs=40.7
Q ss_pred HHHHhcccccEeecCCCCCCchhHHHHhhhCCceeec-CCCccCccchhHHHhhhCCcccccCCHHHHHH
Q 003891 599 DHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTM-AGSVHAHNVGVSLLTKVGLKHLIAKNEDEYVQ 667 (788)
Q Consensus 599 ~~~~~~~~~Dv~Ld~~~~~g~~t~~eal~~GvPvvt~-~g~~~~~r~~~~~l~~~gl~~~ia~~~~~y~~ 667 (788)
+.+.++.-||+++ .+|||.+.||-.+|+|+|.. +|.... + --.|...|+ =+-..|+++-++
T Consensus 241 d~~~Ll~~a~l~I----g~ggTMa~EAA~LGtPaIs~~~g~~~~--v-d~~L~~~Gl-l~~~~~~~ei~~ 302 (335)
T PF04007_consen 241 DGLDLLYYADLVI----GGGGTMAREAALLGTPAISCFPGKLLA--V-DKYLIEKGL-LYHSTDPDEIVE 302 (335)
T ss_pred CHHHHHHhcCEEE----eCCcHHHHHHHHhCCCEEEecCCcchh--H-HHHHHHCCC-eEecCCHHHHHH
Confidence 4445666699998 88999999999999999974 333110 1 134556676 233567776665
No 478
>COG4671 Predicted glycosyl transferase [General function prediction only]
Probab=93.38 E-value=2 Score=45.01 Aligned_cols=126 Identities=15% Similarity=0.271 Sum_probs=82.5
Q ss_pred CCCCeEEEecCCCCcCCHHHHHHHHHHHhHcCCcE--EEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHH
Q 003891 523 TNGFITFGSFNNLAKITPKVLQVWARILCAVPNSR--LVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDH 600 (788)
Q Consensus 523 ~~~~~~f~~~~~~~K~~~~~~~~~~~il~~~p~~~--l~l~~~~~~~~~~~~~l~~~~~~~gi~~~rv~~~~~~~~~~~~ 600 (788)
++++.+.++++-.. ...+++......-...|+.. -+|+.+|+.....++.+...+.. ...|.+... ..++
T Consensus 217 pE~~~Ilvs~GGG~-dG~eLi~~~l~A~~~l~~l~~~~~ivtGP~MP~~~r~~l~~~A~~----~p~i~I~~f---~~~~ 288 (400)
T COG4671 217 PEGFDILVSVGGGA-DGAELIETALAAAQLLAGLNHKWLIVTGPFMPEAQRQKLLASAPK----RPHISIFEF---RNDF 288 (400)
T ss_pred CccceEEEecCCCh-hhHHHHHHHHHHhhhCCCCCcceEEEeCCCCCHHHHHHHHHhccc----CCCeEEEEh---hhhH
Confidence 67777777776543 23456666665555556655 45556778777777777665432 256776666 4577
Q ss_pred HHhcccccEeecCCCCCCchhHHHHhhhCCceeecCCCccC--ccchhHHHhhhCCccccc
Q 003891 601 MQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHA--HNVGVSLLTKVGLKHLIA 659 (788)
Q Consensus 601 ~~~~~~~Dv~Ld~~~~~g~~t~~eal~~GvPvvt~~g~~~~--~r~~~~~l~~~gl~~~ia 659 (788)
..++..||+.+. -+|-+|+||-|..|+|-+..+-..-+ .-+-|--|..+||-+.+-
T Consensus 289 ~~ll~gA~~vVS---m~GYNTvCeILs~~k~aLivPr~~p~eEQliRA~Rl~~LGL~dvL~ 346 (400)
T COG4671 289 ESLLAGARLVVS---MGGYNTVCEILSFGKPALIVPRAAPREEQLIRAQRLEELGLVDVLL 346 (400)
T ss_pred HHHHHhhheeee---cccchhhhHHHhCCCceEEeccCCCcHHHHHHHHHHHhcCcceeeC
Confidence 777788999882 27788999999999998876632211 223345567788877664
No 479
>PRK10017 colanic acid biosynthesis protein; Provisional
Probab=93.31 E-value=2.8 Score=46.56 Aligned_cols=84 Identities=8% Similarity=0.211 Sum_probs=61.3
Q ss_pred CCcEEEc-CCcCCcHHHHHhcccccEeecCCCCCCchhHHHHhhhCCceeecCCCccCccchhHHHhhhCCcccccC---
Q 003891 585 SLRVDLL-PLILLNHDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIAK--- 660 (788)
Q Consensus 585 ~~rv~~~-~~~~~~~~~~~~~~~~Dv~Ld~~~~~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l~~~gl~~~ia~--- 660 (788)
+++++++ +... ..+....++.||+++-+ =-.+++=|+.+|||+|.+.= +.=..+++..+|+++++.+
T Consensus 306 ~~~~~vi~~~~~-~~e~~~iIs~~dl~ig~----RlHa~I~a~~~gvP~i~i~Y----~~K~~~~~~~lg~~~~~~~~~~ 376 (426)
T PRK10017 306 PARYHVVMDELN-DLEMGKILGACELTVGT----RLHSAIISMNFGTPAIAINY----EHKSAGIMQQLGLPEMAIDIRH 376 (426)
T ss_pred ccceeEecCCCC-hHHHHHHHhhCCEEEEe----cchHHHHHHHcCCCEEEeee----hHHHHHHHHHcCCccEEechhh
Confidence 4555443 3323 46888889999999832 23478999999999998662 3445678899999998543
Q ss_pred -CHHHHHHHHHHHhcCHH
Q 003891 661 -NEDEYVQLALQLASDVT 677 (788)
Q Consensus 661 -~~~~y~~~a~~l~~d~~ 677 (788)
+.++.++...++..|.+
T Consensus 377 l~~~~Li~~v~~~~~~r~ 394 (426)
T PRK10017 377 LLDGSLQAMVADTLGQLP 394 (426)
T ss_pred CCHHHHHHHHHHHHhCHH
Confidence 56789998888888874
No 480
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=93.31 E-value=0.7 Score=41.44 Aligned_cols=73 Identities=21% Similarity=0.190 Sum_probs=54.7
Q ss_pred CHHHHHHHHHHHHHcC---CHHHHHHHHHHHHH-hCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhhH
Q 003891 234 FSQSLNNLGVVYTVQG---KMDAAAEMIEKAIA-ANPTY-AEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAG 306 (788)
Q Consensus 234 ~~~~~~~la~~~~~~g---~~~eA~~~l~kal~-~~p~~-~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~a~ 306 (788)
..+..+++++++.... +..+.+.+++..++ -.|.. -+..+.|+..+.+.|+|++++.+.+..++..|+|.++.
T Consensus 31 s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~ 108 (149)
T KOG3364|consen 31 SKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQAL 108 (149)
T ss_pred hHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHH
Confidence 3556777888777654 45567788888886 34433 46677888888889999999999999999888887764
No 481
>PF00982 Glyco_transf_20: Glycosyltransferase family 20; InterPro: IPR001830 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 20 GT20 from CAZY comprises enzymes with only one known activity; alpha, alpha-trehalose-phosphate synthase [UDP-forming] (2.4.1.15 from EC). Synthesis of trehalose in the yeast Saccharomyces cerevisiae is catalysed by the trehalose-6-phosphate (Tre6P) synthase/phosphatase complex, which is composed of at least three different subunits encoded by the genes TPS1, TPS2, and TSL1. Tps1 and Tps2 carry the catalytic activities of trehalose synthesis, namely Tre6P synthase (Tps1) and Tre6P phosphatase (Tps2), while TsI1 has regulatory functions. There is some evidence that TsI1 and Tps3 may share a common function with respect to regulation and/or structural stabilisation of the Tre6P synthase/phosphatase complex in exponentially growing, heat-shocked cells []. OtsA (trehalose-6-phosphate synthase) from Escherichia coli has homology to the full-length TPS1, the N-terminal part of TPS2 and an internal region of TPS3 (TSL1) of yeast [].; GO: 0003824 catalytic activity, 0005992 trehalose biosynthetic process; PDB: 1UQU_A 2WTX_A 1UQT_B 1GZ5_B.
Probab=93.29 E-value=1.5 Score=49.27 Aligned_cols=177 Identities=15% Similarity=0.108 Sum_probs=95.1
Q ss_pred CCCeEEEecCCC--CcCCHHHHHHHHHHHhHcCC----cEEEEecCCCCC-HH----HHHHHHHHHH----HcCCCC-Cc
Q 003891 524 NGFITFGSFNNL--AKITPKVLQVWARILCAVPN----SRLVVKCKPFCC-DS----VRHRFLSTLE----QLGLES-LR 587 (788)
Q Consensus 524 ~~~~~f~~~~~~--~K~~~~~~~~~~~il~~~p~----~~l~l~~~~~~~-~~----~~~~l~~~~~----~~gi~~-~r 587 (788)
++..++.++-++ .|..+.-++++.+.|...|. .+|+-++.+... .+ .++.+.+... ++|-.. .-
T Consensus 274 ~~~~ii~gvDrld~~kGi~~kl~Afe~fL~~~P~~~~kv~liQi~~psr~~~~~y~~~~~~v~~~v~~IN~~~g~~~~~P 353 (474)
T PF00982_consen 274 GKRKIIVGVDRLDYTKGIPEKLRAFERFLERYPEYRGKVVLIQIAVPSREDVPEYQELRREVEELVGRINGKYGTPDWTP 353 (474)
T ss_dssp T-SEEEEEE--B-GGG-HHHHHHHHHHHHHH-GGGTTTEEEEEE--B-STTSHHHHHHHHHHHHHHHHHHHHH-BTTB-S
T ss_pred CCcEEEEEeccchhhcCHHHHHHHHHHHHHhCcCccCcEEEEEEeeccCccchhHHHHHHHHHHHHHHHHhhcccCCcee
Confidence 334567777877 89999999999999999987 455555544321 12 3333333322 244331 13
Q ss_pred EEEcCCcCCcHHHHHhcccccEeecCCCCCC-chhHHHHhhhCCceeecCCCccCccchhHHHhhhCCcc--c-c-cCCH
Q 003891 588 VDLLPLILLNHDHMQAYSLMDISLDTFPYAG-TTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKH--L-I-AKNE 662 (788)
Q Consensus 588 v~~~~~~~~~~~~~~~~~~~Dv~Ld~~~~~g-~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l~~~gl~~--~-i-a~~~ 662 (788)
|++.....+.++.+++|+.+||+|.|+---| ..++.|-.++-.+ -+|...-|+.+++ -. .|.+ + | ..|.
T Consensus 354 I~~~~~~~~~~~~~aly~~aDv~lvTslrDGmNLva~Eyva~q~~---~~GvLiLSefaGa-a~--~L~~~al~VNP~d~ 427 (474)
T PF00982_consen 354 IIYIYRSLSFEELLALYRAADVALVTSLRDGMNLVAKEYVACQDD---NPGVLILSEFAGA-AE--QLSEAALLVNPWDI 427 (474)
T ss_dssp EEEE-S---HHHHHHHHHH-SEEEE--SSBS--HHHHHHHHHS-T---S--EEEEETTBGG-GG--T-TTS-EEE-TT-H
T ss_pred EEEEecCCCHHHHHHHHHhhhhEEecchhhccCCcceEEEEEecC---CCCceEeeccCCH-HH--HcCCccEEECCCCh
Confidence 6666554448999999999999999998866 5589999998766 2222223444322 11 2221 1 1 3466
Q ss_pred HHHHHHHHHHh-cCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHH
Q 003891 663 DEYVQLALQLA-SDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTY 709 (788)
Q Consensus 663 ~~y~~~a~~l~-~d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~ 709 (788)
++.++...+-. ..+++++...+.+++.+.+. |...|++.+-+.+
T Consensus 428 ~~~A~ai~~AL~M~~~Er~~r~~~~~~~v~~~---~~~~W~~~~l~~L 472 (474)
T PF00982_consen 428 EEVADAIHEALTMPPEERKERHARLREYVREH---DVQWWAESFLRDL 472 (474)
T ss_dssp HHHHHHHHHHHT--HHHHHHHHHHHHHHHHHT----HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhHhC---CHHHHHHHHHHHh
Confidence 66666544433 35667777677777777654 7778877765543
No 482
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=93.19 E-value=0.15 Score=32.49 Aligned_cols=26 Identities=54% Similarity=0.719 Sum_probs=10.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh
Q 003891 62 YNLGVVYSELMQYDTALGCYEKAALE 87 (788)
Q Consensus 62 ~~lg~~~~~~g~~~~A~~~~~kal~~ 87 (788)
+.+|.++...+++++|+..++++++.
T Consensus 5 ~~~a~~~~~~~~~~~a~~~~~~~~~~ 30 (34)
T smart00028 5 YNLGNAYLKLGDYDEALEYYEKALEL 30 (34)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence 33444444444444444444444333
No 483
>PRK10117 trehalose-6-phosphate synthase; Provisional
Probab=93.13 E-value=3.2 Score=46.35 Aligned_cols=179 Identities=17% Similarity=0.148 Sum_probs=111.7
Q ss_pred CeEEEecCCC--CcCCHHHHHHHHHHHhHcCC----cEEEEecCCCCCH-----HHHHHHHHHHH----HcCCCC-CcEE
Q 003891 526 FITFGSFNNL--AKITPKVLQVWARILCAVPN----SRLVVKCKPFCCD-----SVRHRFLSTLE----QLGLES-LRVD 589 (788)
Q Consensus 526 ~~~f~~~~~~--~K~~~~~~~~~~~il~~~p~----~~l~l~~~~~~~~-----~~~~~l~~~~~----~~gi~~-~rv~ 589 (788)
..++.++-|+ .|..++=+.+|.+.|...|. .+|+-++.+.... .++.++.+... ++|-.. .=|.
T Consensus 255 ~~lilgVDRLDytKGi~~rl~Afe~fL~~~Pe~~gkvvlvQia~psR~~v~~Y~~l~~~v~~~vg~INg~fg~~~w~Pv~ 334 (474)
T PRK10117 255 VQNIFSVERLDYSKGLPERFLAYEALLEKYPQHHGKIRYTQIAPTSRGDVQAYQDIRHQLETEAGRINGKYGQLGWTPLY 334 (474)
T ss_pred CeEEEEecccccccCHHHHHHHHHHHHHhChhhcCCEEEEEEcCCCCCccHHHHHHHHHHHHHHHHHHhccCCCCceeEE
Confidence 3456677877 89999999999999999986 5566666554221 23333333332 234321 1255
Q ss_pred EcCCcCCcHHHHHhcccccEeecCCCCCC-chhHHHHhhhCCceeecCCCccCccchh--HHHhhhCCcccc--cCCHHH
Q 003891 590 LLPLILLNHDHMQAYSLMDISLDTFPYAG-TTTTCESLYMGVPCVTMAGSVHAHNVGV--SLLTKVGLKHLI--AKNEDE 664 (788)
Q Consensus 590 ~~~~~~~~~~~~~~~~~~Dv~Ld~~~~~g-~~t~~eal~~GvPvvt~~g~~~~~r~~~--~~l~~~gl~~~i--a~~~~~ 664 (788)
++...-+.++.++.|+.+||+|.|+---| -.++-|-.++--| .-+|-..-|+.++ ..|. | -++ ..|.++
T Consensus 335 y~~~~~~~~~l~alyr~ADv~lVTplRDGMNLVAkEyva~q~~--~~~GvLILSefAGaA~~L~--~--AllVNP~d~~~ 408 (474)
T PRK10117 335 YLNQHFDRKLLMKIFRYSDVGLVTPLRDGMNLVAKEYVAAQDP--ANPGVLVLSQFAGAANELT--S--ALIVNPYDRDE 408 (474)
T ss_pred EecCCCCHHHHHHHHHhccEEEecccccccccccchheeeecC--CCCccEEEecccchHHHhC--C--CeEECCCCHHH
Confidence 55554447899999999999999998766 4488898888543 0111112244431 2221 1 111 357777
Q ss_pred HHHHHHH-HhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHH
Q 003891 665 YVQLALQ-LASDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRNMW 713 (788)
Q Consensus 665 y~~~a~~-l~~d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ 713 (788)
.++...+ |...++++++.-+.+++.+.+ +|...|++.+-+.+..+.
T Consensus 409 ~A~Ai~~AL~Mp~~Er~~R~~~l~~~v~~---~dv~~W~~~fL~~L~~~~ 455 (474)
T PRK10117 409 VAAALDRALTMPLAERISRHAEMLDVIVK---NDINHWQECFISDLKQIV 455 (474)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHhhh---CCHHHHHHHHHHHHHHhh
Confidence 7765443 445666777767777777655 488888888887776654
No 484
>PRK10916 ADP-heptose:LPS heptosyltransferase II; Provisional
Probab=93.09 E-value=1.6 Score=47.38 Aligned_cols=111 Identities=14% Similarity=0.022 Sum_probs=63.9
Q ss_pred CCeEEEecCC--CCcCCH-HHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCC-CCc-EEEcCCcCCcHH
Q 003891 525 GFITFGSFNN--LAKITP-KVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLE-SLR-VDLLPLILLNHD 599 (788)
Q Consensus 525 ~~~~f~~~~~--~~K~~~-~~~~~~~~il~~~p~~~l~l~~~~~~~~~~~~~l~~~~~~~gi~-~~r-v~~~~~~~~~~~ 599 (788)
..|+|.-..+ ..|.=| +-+...++-+.. .+.+++|.|++ ..++...+..+..+-. ..+ +.+.|..+ -.+
T Consensus 181 ~~i~i~pga~~~~~K~Wp~e~~a~l~~~l~~-~~~~vvl~Gg~----~e~~~~~~i~~~~~~~~~~~~~~l~g~~s-L~e 254 (348)
T PRK10916 181 PIIGFCPGAEFGPAKRWPHYHYAELAQQLID-EGYQVVLFGSA----KDHEAGNEILAALNTEQQAWCRNLAGETQ-LEQ 254 (348)
T ss_pred CEEEEeCCCCCccccCCCHHHHHHHHHHHHH-CCCeEEEEeCH----HhHHHHHHHHHhcccccccceeeccCCCC-HHH
Confidence 3565655443 345444 444444443432 46677777765 3333333333332211 123 45666655 688
Q ss_pred HHHhcccccEeecCCCCCCchhHHHHhhhCCceeecCCCccCccch
Q 003891 600 HMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVG 645 (788)
Q Consensus 600 ~~~~~~~~Dv~Ld~~~~~g~~t~~eal~~GvPvvt~~g~~~~~r~~ 645 (788)
..+.++.||+++-. -+| .+==|-++|+|+|++-|.+...+.+
T Consensus 255 l~ali~~a~l~I~n--DTG--p~HlAaA~g~P~valfGpt~p~~~~ 296 (348)
T PRK10916 255 AVILIAACKAIVTN--DSG--LMHVAAALNRPLVALYGPSSPDFTP 296 (348)
T ss_pred HHHHHHhCCEEEec--CCh--HHHHHHHhCCCEEEEECCCCccccC
Confidence 99999999999722 122 2334778999999999987665554
No 485
>PF07429 Glyco_transf_56: 4-alpha-L-fucosyltransferase glycosyl transferase group 56; InterPro: IPR009993 This family contains the bacterial enzyme 4-alpha-L-fucosyltransferase (Fuc4NAc transferase) (approximately 360 residues long). This catalyses the synthesis of Fuc4NAc-ManNAcA-GlcNAc-PP-Und (lipid III) as part of the biosynthetic pathway of enterobacterial common antigen (ECA), a polysaccharide comprised of the trisaccharide repeat unit Fuc4NAc-ManNAcA-GlcNAc [].; GO: 0008417 fucosyltransferase activity, 0009246 enterobacterial common antigen biosynthetic process, 0009276 Gram-negative-bacterium-type cell wall
Probab=93.06 E-value=3.6 Score=43.39 Aligned_cols=123 Identities=12% Similarity=0.097 Sum_probs=80.7
Q ss_pred CeEEEecCCCCcCCHHHHHHHHHHHhHc-CCcEEEE-ecCCCCCHHHHHHHHHHHHHcCCCCCcEEEc-CCcCCcHHHHH
Q 003891 526 FITFGSFNNLAKITPKVLQVWARILCAV-PNSRLVV-KCKPFCCDSVRHRFLSTLEQLGLESLRVDLL-PLILLNHDHMQ 602 (788)
Q Consensus 526 ~~~f~~~~~~~K~~~~~~~~~~~il~~~-p~~~l~l-~~~~~~~~~~~~~l~~~~~~~gi~~~rv~~~-~~~~~~~~~~~ 602 (788)
.|..|+-+...-.|-+.++ +|.+.. .+.++++ +|-|...+..++++++...++--+ +++..+ ..++ .+||+.
T Consensus 187 tILvGNSgd~sNnHieaL~---~L~~~~~~~~kIivPLsYg~~n~~Yi~~V~~~~~~lF~~-~~~~iL~e~mp-f~eYl~ 261 (360)
T PF07429_consen 187 TILVGNSGDPSNNHIEALE---ALKQQFGDDVKIIVPLSYGANNQAYIQQVIQAGKELFGA-ENFQILTEFMP-FDEYLA 261 (360)
T ss_pred EEEEcCCCCCCccHHHHHH---HHHHhcCCCeEEEEECCCCCchHHHHHHHHHHHHHhcCc-cceeEhhhhCC-HHHHHH
Confidence 4555555555555555555 444433 3455544 233323456788888888776444 566544 4555 799999
Q ss_pred hcccccEeecCCCC-CCchhHHHHhhhCCceeecCCCccCccchhHHHhhhCCcccc
Q 003891 603 AYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLI 658 (788)
Q Consensus 603 ~~~~~Dv~Ld~~~~-~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l~~~gl~~~i 658 (788)
.++.||++.-.+.= -|--|+|=.|++|+||+.-...+ -...|...|++=+.
T Consensus 262 lL~~cDl~if~~~RQQgiGnI~lLl~~G~~v~L~~~np-----~~~~l~~~~ipVlf 313 (360)
T PF07429_consen 262 LLSRCDLGIFNHNRQQGIGNICLLLQLGKKVFLSRDNP-----FWQDLKEQGIPVLF 313 (360)
T ss_pred HHHhCCEEEEeechhhhHhHHHHHHHcCCeEEEecCCh-----HHHHHHhCCCeEEe
Confidence 99999999988765 45558899999999999744322 33567788887654
No 486
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=92.99 E-value=1.2 Score=42.90 Aligned_cols=98 Identities=17% Similarity=0.054 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCH----HHH
Q 003891 202 EACNNLGVIYKDRDNLDKAVECYQMALSIKPNF---SQSLNNLGVVYTVQGKMDAAAEMIEKAIAANP--TYA----EAY 272 (788)
Q Consensus 202 ~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p--~~~----~~~ 272 (788)
.++..+|..|.+.|+.++|++.|.++.+..... .+.+.++..+....+++.....++.++-..-. .+. ...
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 345555666666666666666666655443222 23455555556666666666666666554421 122 123
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 003891 273 NNLGVLYRDAGSISLAIDAYEQCLKID 299 (788)
Q Consensus 273 ~~la~~~~~~g~~~eA~~~~~~al~l~ 299 (788)
..-|..+...++|.+|.+.|-.+..-.
T Consensus 117 ~~~gL~~l~~r~f~~AA~~fl~~~~t~ 143 (177)
T PF10602_consen 117 VYEGLANLAQRDFKEAAELFLDSLSTF 143 (177)
T ss_pred HHHHHHHHHhchHHHHHHHHHccCcCC
Confidence 345666677888888888877665433
No 487
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=92.80 E-value=1 Score=54.86 Aligned_cols=136 Identities=18% Similarity=0.201 Sum_probs=98.7
Q ss_pred HHHHHHHHHHHHHcCChHHHHH------HHHH-HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------C
Q 003891 24 AIVLTDLGTSLKLAGNTQDGIQ------KYYE-ALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALE--------R 88 (788)
Q Consensus 24 a~~l~~lg~~~~~~g~~~~A~~------~~~~-al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~--------~ 88 (788)
+.-....|......|.+.+|.+ .+.. .-.+.|.....+..++.++...+++++|+..-.++.-+ .
T Consensus 932 a~~~~e~gq~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds 1011 (1236)
T KOG1839|consen 932 AKDSPEQGQEALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDS 1011 (1236)
T ss_pred hhhhhhhhhhhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCC
Confidence 3445667777777888887777 5542 23347888999999999999999999999998887543 3
Q ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC-----CCcHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHhC
Q 003891 89 PMYAEAYCNMGVIYKNRGDLESAIACYERCLAVS-----PNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYN 163 (788)
Q Consensus 89 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-----p~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~ 163 (788)
|+....+.+++...+..++...|+..+.++..+. |.++. .+.+..+++.++...++++.|+++.+.|...+
T Consensus 1012 ~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~----~a~~~~nle~l~~~v~e~d~al~~le~A~a~~ 1087 (1236)
T KOG1839|consen 1012 PNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPP----TALSFINLELLLLGVEEADTALRYLESALAKN 1087 (1236)
T ss_pred HHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCc----hhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 4567788999999999999999999999887752 22221 12223333444444568999999999988743
No 488
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=92.74 E-value=7.7 Score=43.78 Aligned_cols=210 Identities=10% Similarity=0.048 Sum_probs=118.9
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHh-------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH------HhC
Q 003891 28 TDLGTSLKLAGNTQDGIQKYYEALKI-------------DPHYAPAYYNLGVVYSELMQYDTALGCYEKAA------LER 88 (788)
Q Consensus 28 ~~lg~~~~~~g~~~~A~~~~~~al~~-------------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal------~~~ 88 (788)
..++......=+++-|.+.|.++-.+ ......--..++.++...|++.+|.+.|.+.- ++.
T Consensus 589 ~~LA~~ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~iLlA~~~Ay~gKF~EAAklFk~~G~enRAlEmy 668 (1081)
T KOG1538|consen 589 RELAMEALEALDFETARKAYIRVRDLRYLELISELEERKKRGETPNDLLLADVFAYQGKFHEAAKLFKRSGHENRALEMY 668 (1081)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchHHHHHHHHHhhhhHHHHHHHHHHcCchhhHHHHH
Confidence 34455555555666676666654221 11111223456788888899999998887642 211
Q ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHH----------
Q 003891 89 PMYAEAYCNMGVIYKNRGDLESAIACYERCLAV--SPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYY---------- 156 (788)
Q Consensus 89 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~---------- 156 (788)
.+ .-.+.+++-+...|.-++-....++--+- +-+.+.+ .++.....|+.++|+...
T Consensus 669 TD--lRMFD~aQE~~~~g~~~eKKmL~RKRA~WAr~~kePka----------AAEmLiSaGe~~KAi~i~~d~gW~d~li 736 (1081)
T KOG1538|consen 669 TD--LRMFDYAQEFLGSGDPKEKKMLIRKRADWARNIKEPKA----------AAEMLISAGEHVKAIEICGDHGWVDMLI 736 (1081)
T ss_pred HH--HHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhcCCcHH----------HHHHhhcccchhhhhhhhhcccHHHHHH
Confidence 11 12344455555555555444444332221 1111111 122333456777766542
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-H
Q 003891 157 KKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNF-S 235 (788)
Q Consensus 157 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~-~ 235 (788)
+-+-+++....+.+..++..+.....+.-|.+.|++.-. ...+..++.+.++|.+|....++- |+. +
T Consensus 737 dI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD--------~ksiVqlHve~~~W~eAFalAe~h----Pe~~~ 804 (1081)
T KOG1538|consen 737 DIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGD--------LKSLVQLHVETQRWDEAFALAEKH----PEFKD 804 (1081)
T ss_pred HHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhcc--------HHHHhhheeecccchHhHhhhhhC----ccccc
Confidence 222233444555666677777777777777777766422 223455667788999988776653 333 4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003891 236 QSLNNLGVVYTVQGKMDAAAEMIEKA 261 (788)
Q Consensus 236 ~~~~~la~~~~~~g~~~eA~~~l~ka 261 (788)
..++..|..+.+..++++|.+.|.+|
T Consensus 805 dVy~pyaqwLAE~DrFeEAqkAfhkA 830 (1081)
T KOG1538|consen 805 DVYMPYAQWLAENDRFEEAQKAFHKA 830 (1081)
T ss_pred cccchHHHHhhhhhhHHHHHHHHHHh
Confidence 47788888889999999988777665
No 489
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=92.70 E-value=3.3 Score=44.42 Aligned_cols=170 Identities=14% Similarity=0.137 Sum_probs=123.1
Q ss_pred HHHHHHHHHcCCCChhhHHHHHHHHHHHHH-----HHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC--HH
Q 003891 3 VASYHKALSADPSYKPAAECLAIVLTDLGT-----SLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQ--YD 75 (788)
Q Consensus 3 i~~~~kaL~~~P~~~~a~~~la~~l~~lg~-----~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~--~~ 75 (788)
++.=.+.+..+|+....|...-.++...-. -..++.-.++-+.+...+++.+|+...+|+....++.+.+. +.
T Consensus 49 l~lt~~ll~~npe~~t~wN~Rr~~~~~r~~~~~~~~~ek~~~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~~~~ 128 (421)
T KOG0529|consen 49 LELTSELLEKNPEFYTVWNYRRLIIEERLTRAQLEPLEKQALLDEELKYVESALKVNPKSYGAWHHRKWVLQKNPHSDWN 128 (421)
T ss_pred HHHHHHHHhhCchhhhhhhhHHHHHHHhhhhhcCCHHHHHHhhHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCCchHH
Confidence 455567788888887777655555444333 33444567788888999999999999999999999998764 68
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhcC----
Q 003891 76 TALGCYEKAALERPMYAEAYCNMGVIYKNRG----DLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEG---- 147 (788)
Q Consensus 76 ~A~~~~~kal~~~p~~~~~~~~la~~~~~~g----~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~g---- 147 (788)
.=+++.+++++.+|.+..+|...=.+..... ...+-+++..+++..++.+-.+|.....++..+-.- ...|
T Consensus 129 ~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~~~El~ftt~~I~~nfSNYsaWhyRs~lL~~l~~~-~~~g~~~~ 207 (421)
T KOG0529|consen 129 TELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLEKEELEFTTKLINDNFSNYSAWHYRSLLLSTLHPK-EADGNFMP 207 (421)
T ss_pred HHHHHHHHHHhcCcccccchHHHHHHHHHHhcccccchhHHHHHHHHHhccchhhhHHHHHHHHHHHhccc-cccCccCC
Confidence 8899999999999998888766655544432 356778889999999999888888877766543210 1112
Q ss_pred --CHHHHHHHHHHHHHhCCCCHHHHHHH
Q 003891 148 --DINQGVAYYKKALYYNWHYADAMYNL 173 (788)
Q Consensus 148 --~~~~A~~~~~~al~~~p~~~~~~~~l 173 (788)
...+-++.-..++-.+|++..+|...
T Consensus 208 ~~~l~sEle~v~saiFTdp~DqS~WfY~ 235 (421)
T KOG0529|consen 208 KELLQSELEMVHSAIFTDPEDQSCWFYH 235 (421)
T ss_pred HHHHHHHHHHHHHHHhcCccccceeeeh
Confidence 23455666677777889888877653
No 490
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.65 E-value=11 Score=42.69 Aligned_cols=98 Identities=18% Similarity=0.137 Sum_probs=75.0
Q ss_pred HHHHHHhhhhhhhcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHH
Q 003891 133 AIALTDLGTKVKLEGDINQGVAYYKKALYYNWHY------ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNN 206 (788)
Q Consensus 133 a~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 206 (788)
-.++.+.+....+..+|..+++.|+..+...|.+ ......++.+|..+.+.+.|.+++++|-+.+|.++-....
T Consensus 354 H~iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~ 433 (872)
T KOG4814|consen 354 HTLLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLL 433 (872)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHH
Confidence 3445555666667778888888888888776654 2356678888888888888888888888888888887777
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhh
Q 003891 207 LGVIYKDRDNLDKAVECYQMALSI 230 (788)
Q Consensus 207 la~~~~~~g~~~eA~~~~~~al~~ 230 (788)
+-.+....++-++|+.+..+....
T Consensus 434 ~~~~~~~E~~Se~AL~~~~~~~s~ 457 (872)
T KOG4814|consen 434 MLQSFLAEDKSEEALTCLQKIKSS 457 (872)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhh
Confidence 777778888888888888776654
No 491
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.44 E-value=6.8 Score=43.74 Aligned_cols=156 Identities=10% Similarity=0.055 Sum_probs=98.5
Q ss_pred cCChHHHHHHHHHHHHh------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----------------
Q 003891 37 AGNTQDGIQKYYEALKI------------DPHYAPAYYNLGVVYSELMQYDTALGCYEKAALE----------------- 87 (788)
Q Consensus 37 ~g~~~~A~~~~~~al~~------------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~----------------- 87 (788)
...|++|...|.-+... .|-+.+.+..++.+...+|+.+.|....++++-.
T Consensus 251 s~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cR 330 (665)
T KOG2422|consen 251 SNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCR 330 (665)
T ss_pred chHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhcccccccccccc
Confidence 45677888888877665 4567889999999999999999888888887631
Q ss_pred ----CCCCHH---HHHHHHHHHHHCCCHHHHHHHHHHHHhhCCC-cHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHH
Q 003891 88 ----RPMYAE---AYCNMGVIYKNRGDLESAIACYERCLAVSPN-FEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKA 159 (788)
Q Consensus 88 ----~p~~~~---~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~a 159 (788)
.|.+-. +++..-..+.+.|=+..|.++++-.+.++|. ++-....+...|...+ .+|+=-++.++..
T Consensus 331 L~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALra------reYqwiI~~~~~~ 404 (665)
T KOG2422|consen 331 LPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRA------REYQWIIELSNEP 404 (665)
T ss_pred CcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHH------HhHHHHHHHHHHH
Confidence 222222 3344455667789999999999999999998 7755444444444433 3444444444333
Q ss_pred H-----HhCCCCHHHHHHHHHHHHHcCC---hHHHHHHHHHHHhcCCC
Q 003891 160 L-----YYNWHYADAMYNLGVAYGEMLK---FDMAIVFYELAFHFNPH 199 (788)
Q Consensus 160 l-----~~~p~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~p~ 199 (788)
- ..-|+.. .-..++..|..... -+.|...+.+|++..|.
T Consensus 405 e~~n~l~~~PN~~-yS~AlA~f~l~~~~~~~rqsa~~~l~qAl~~~P~ 451 (665)
T KOG2422|consen 405 ENMNKLSQLPNFG-YSLALARFFLRKNEEDDRQSALNALLQALKHHPL 451 (665)
T ss_pred HhhccHhhcCCch-HHHHHHHHHHhcCChhhHHHHHHHHHHHHHhCcH
Confidence 1 2223322 12234444444443 45566666666666653
No 492
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=92.24 E-value=29 Score=40.79 Aligned_cols=260 Identities=12% Similarity=0.015 Sum_probs=154.9
Q ss_pred HHHHHHHHcCCCChhhHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHH---HcCCHHHHHHH
Q 003891 4 ASYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYS---ELMQYDTALGC 80 (788)
Q Consensus 4 ~~~~kaL~~~P~~~~a~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~---~~g~~~~A~~~ 80 (788)
.-+++-+.+++.+... +..|-..+...|++++-...-.++.++.|..+..|.....-.. ..++-.++...
T Consensus 100 ~t~~ee~ai~~y~~~~-------~v~Li~llrk~~dl~kl~~ar~~~~~~~pl~~~lWl~Wl~d~~~mt~s~~~~~v~~~ 172 (881)
T KOG0128|consen 100 RTLEEELAINSYKYAQ-------MVQLIGLLRKLGDLEKLRQARLEMSEIAPLPPHLWLEWLKDELSMTQSEERKEVEEL 172 (881)
T ss_pred HHHHHHhcccccchHH-------HHHHHHHHHHhcchHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccCcchhHHHHH
Confidence 3444555555554444 4445556677889888888888888888888888876654433 23667788888
Q ss_pred HHHHHHhCCCCHHHHHHHHHH-------HHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhcCCHHHHH
Q 003891 81 YEKAALERPMYAEAYCNMGVI-------YKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGV 153 (788)
Q Consensus 81 ~~kal~~~p~~~~~~~~la~~-------~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~g~~~~A~ 153 (788)
|++++... +....|...+.. +...++++.-...|.+++..-.....--..+...+......|...-..++-+
T Consensus 173 ~ekal~dy-~~v~iw~e~~~y~~~~~~~~~~~~d~k~~R~vf~ral~s~g~~~t~G~~~we~~~E~e~~~l~n~~~~qv~ 251 (881)
T KOG0128|consen 173 FEKALGDY-NSVPIWEEVVNYLVGFGNVAKKSEDYKKERSVFERALRSLGSHITEGAAIWEMYREFEVTYLCNVEQRQVI 251 (881)
T ss_pred HHHHhccc-ccchHHHHHHHHHHhccccccccccchhhhHHHHHHHhhhhhhhcccHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 99987643 334444444433 3455678888889999987644332222233444555555555555557777
Q ss_pred HHHHHHHHhCCCCHHH----HHHHH---HHHHHcCChHHHHHHHHH-------HHhcCCCCHHHHHHHHHHHHHcCCHHH
Q 003891 154 AYYKKALYYNWHYADA----MYNLG---VAYGEMLKFDMAIVFYEL-------AFHFNPHCAEACNNLGVIYKDRDNLDK 219 (788)
Q Consensus 154 ~~~~~al~~~p~~~~~----~~~la---~~~~~~g~~~~A~~~~~~-------al~~~p~~~~~~~~la~~~~~~g~~~e 219 (788)
.++...+... -+.++ +.... .......+++.|.+-+.+ .++..+.....|..+-......|....
T Consensus 252 a~~~~el~~~-~D~~~~~~~~~~~sk~h~~~~~~~~~~~a~~~l~~~~~~~e~~~q~~~~~~q~~~~yidfe~~~G~p~r 330 (881)
T KOG0128|consen 252 ALFVRELKQP-LDEDTRGWDLSEQSKAHVYDVETKKLDDALKNLAKILFKFERLVQKEPIKDQEWMSYIDFEKKSGDPVR 330 (881)
T ss_pred HHHHHHHhcc-chhhhhHHHHHHHHhcchHHHHhccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCchH
Confidence 7777777654 22211 11111 111233445555444333 333344445566777777778888888
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCCHHHH
Q 003891 220 AVECYQMALSIKPNFSQSLNNLGVVYTV-QGKMDAAAEMIEKAIAANPTYAEAY 272 (788)
Q Consensus 220 A~~~~~~al~~~p~~~~~~~~la~~~~~-~g~~~eA~~~l~kal~~~p~~~~~~ 272 (788)
-...++++....+.+...|...+...-. ++-.+.+...+-+++...|-....|
T Consensus 331 i~l~~eR~~~E~~~~~~~wi~y~~~~d~eLkv~~~~~~~~~ra~R~cp~tgdL~ 384 (881)
T KOG0128|consen 331 IQLIEERAVAEMVLDRALWIGYGVYLDTELKVPQRGVSVHPRAVRSCPWTGDLW 384 (881)
T ss_pred HHHHHHHHHHhccccHHHHhhhhhhcccccccccccccccchhhcCCchHHHHH
Confidence 8888999988888888888777765432 3333344455555555555444333
No 493
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=92.24 E-value=0.84 Score=49.25 Aligned_cols=124 Identities=12% Similarity=-0.012 Sum_probs=104.3
Q ss_pred hcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 003891 145 LEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECY 224 (788)
Q Consensus 145 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~ 224 (788)
..|+...|-.-...++...|..+......+.+...+|+|+.+...+..+-..-.....+...+-.....+|++++|....
T Consensus 301 ~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s~a 380 (831)
T PRK15180 301 ADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALSTA 380 (831)
T ss_pred hccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHHHH
Confidence 36888888888999999999999999999999999999999999887766654444555666667778899999999999
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 003891 225 QMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTY 268 (788)
Q Consensus 225 ~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~ 268 (788)
+-.+...-+++++..--+.....+|-+++|..++++.+.++|..
T Consensus 381 ~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~ 424 (831)
T PRK15180 381 EMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPET 424 (831)
T ss_pred HHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCChh
Confidence 99888877888877777777778899999999999999998754
No 494
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=92.24 E-value=1.9 Score=39.68 Aligned_cols=71 Identities=17% Similarity=0.055 Sum_probs=32.5
Q ss_pred cCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC
Q 003891 180 MLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGK 250 (788)
Q Consensus 180 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 250 (788)
.++.+++...+...--+.|+..+.-..-|.++...|+|.+|+..++...+..+..+...-.++.|+..+|+
T Consensus 23 ~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~D 93 (153)
T TIGR02561 23 SADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGD 93 (153)
T ss_pred cCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCC
Confidence 44444444444444444444444444444444444444444444444444444444444444444444433
No 495
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=92.23 E-value=2.6 Score=37.94 Aligned_cols=73 Identities=12% Similarity=0.149 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHcC---CHHHHHHHHHHHHh-hCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 003891 201 AEACNNLGVIYKDRD---NLDKAVECYQMALS-IKPN-FSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYN 273 (788)
Q Consensus 201 ~~~~~~la~~~~~~g---~~~eA~~~~~~al~-~~p~-~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~ 273 (788)
....+++++++.... +..+.+.+++..++ -.|. .-+..+.|+..+++.++|++++.+.+..++..|++.++..
T Consensus 32 ~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~ 109 (149)
T KOG3364|consen 32 KQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALE 109 (149)
T ss_pred HHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHH
Confidence 455666666666554 34556777777775 3332 2446677777777778888888888777777777766543
No 496
>PRK01021 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=92.22 E-value=1.5 Score=50.08 Aligned_cols=139 Identities=15% Similarity=0.157 Sum_probs=78.7
Q ss_pred CcCCHHHHHHHH-HHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHHHHhcccccEeecCC
Q 003891 536 AKITPKVLQVWA-RILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTF 614 (788)
Q Consensus 536 ~K~~~~~~~~~~-~il~~~p~~~l~l~~~~~~~~~~~~~l~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~~Dv~Ld~~ 614 (788)
.++-|.++++.. +.++ ++.++++-.. .+..++.+++.++..++- .+.+... . +-...++.||++|
T Consensus 428 ~rllPv~l~aa~~~~l~--~~l~fvvp~a---~~~~~~~i~~~~~~~~~~--~~~ii~~---~-~~~~~m~aaD~aL--- 493 (608)
T PRK01021 428 LRNLTIQVQAFLASSLA--STHQLLVSSA---NPKYDHLILEVLQQEGCL--HSHIVPS---Q-FRYELMRECDCAL--- 493 (608)
T ss_pred HHHHHHHHHHHHHHHhc--cCeEEEEecC---chhhHHHHHHHHhhcCCC--CeEEecC---c-chHHHHHhcCeee---
Confidence 455677777654 1222 2455555322 223345556655443321 1223221 1 1135566699999
Q ss_pred CCCCchhHHHHhhhCCceeecCCCccCcc-chhHHHh----hhC----------Ccccc----cCCHHHHHHHHHHHhcC
Q 003891 615 PYAGTTTTCESLYMGVPCVTMAGSVHAHN-VGVSLLT----KVG----------LKHLI----AKNEDEYVQLALQLASD 675 (788)
Q Consensus 615 ~~~g~~t~~eal~~GvPvvt~~g~~~~~r-~~~~~l~----~~g----------l~~~i----a~~~~~y~~~a~~l~~d 675 (788)
-..||.|+|++.+|+|.|+.---..-+. ++--+++ .+| .||++ .-+++...+. +++..|
T Consensus 494 -aaSGTaTLEaAL~g~PmVV~YK~s~Lty~Iak~Lvki~i~yIsLpNIIagr~VvPEllqgQ~~~tpe~La~~-l~lL~d 571 (608)
T PRK01021 494 -AKCGTIVLETALNQTPTIVTCQLRPFDTFLAKYIFKIILPAYSLPNIILGSTIFPEFIGGKKDFQPEEVAAA-LDILKT 571 (608)
T ss_pred -ecCCHHHHHHHHhCCCEEEEEecCHHHHHHHHHHHhccCCeeehhHHhcCCCcchhhcCCcccCCHHHHHHH-HHHhcC
Confidence 6679999999999999776442211111 1111122 123 36777 3456776665 699999
Q ss_pred HHHHHHHHHHHHHHh
Q 003891 676 VTALANLRMSLRDLM 690 (788)
Q Consensus 676 ~~~~~~~r~~~~~~~ 690 (788)
++.++++++.+++..
T Consensus 572 ~~~r~~~~~~l~~lr 586 (608)
T PRK01021 572 SQSKEKQKDACRDLY 586 (608)
T ss_pred HHHHHHHHHHHHHHH
Confidence 998888888886543
No 497
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=92.18 E-value=0.22 Score=48.71 Aligned_cols=58 Identities=24% Similarity=0.402 Sum_probs=35.0
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcH
Q 003891 69 SELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFE 126 (788)
Q Consensus 69 ~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 126 (788)
.+.++.+.|.+.|.+++++.|+....|+.+|....+.|+++.|.+.|++.++++|.+.
T Consensus 6 ~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~ 63 (287)
T COG4976 6 AESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDH 63 (287)
T ss_pred cccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccc
Confidence 3455556666666666666666666666666666666666666666666666665543
No 498
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=92.14 E-value=2.2 Score=39.18 Aligned_cols=81 Identities=10% Similarity=-0.001 Sum_probs=64.1
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC
Q 003891 28 TDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGD 107 (788)
Q Consensus 28 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g~ 107 (788)
......-...++.+++...+...--+.|+.++.-..-|.++...|++.+|+..++...+..+..+.+--.++.|+..+|+
T Consensus 14 i~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~D 93 (153)
T TIGR02561 14 IEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGD 93 (153)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCC
Confidence 33334444578888888888888888888888888888888888888888888888887777777777788888888877
Q ss_pred H
Q 003891 108 L 108 (788)
Q Consensus 108 ~ 108 (788)
.
T Consensus 94 p 94 (153)
T TIGR02561 94 A 94 (153)
T ss_pred h
Confidence 4
No 499
>COG0381 WecB UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]
Probab=92.12 E-value=5.3 Score=42.86 Aligned_cols=297 Identities=16% Similarity=0.147 Sum_probs=169.3
Q ss_pred cccChhHHhhhhhhcccCCCc-eEEEEEeccccCC-hhhHHHHHHHhhh-CCeEEEcc--CCC--------HHHHHHHHH
Q 003891 364 YFTHSVSYFIEAPLVYHDYQN-YKVVVYSAVVKAD-AKTIRFREKVMKK-GGIWRDIY--GID--------EKKVAAMVR 430 (788)
Q Consensus 364 f~~H~v~~~~~~~l~~~dr~~-fev~~Y~~~~~~D-~~t~~~r~~~~~~-~~~~~~~~--~~~--------~~~~a~~i~ 430 (788)
|...|-..-+.++....+... |+.++..++...| ++...+-.-..-. .|..-++. +-+ -..+-+.+.
T Consensus 10 ~GTRPE~iKmapli~~~~~~~~~~~~vi~TGQH~d~em~~~~le~~~i~~pdy~L~i~~~~~tl~~~t~~~i~~~~~vl~ 89 (383)
T COG0381 10 FGTRPEAIKMAPLVKALEKDPDFELIVIHTGQHRDYEMLDQVLELFGIRKPDYDLNIMKPGQTLGEITGNIIEGLSKVLE 89 (383)
T ss_pred EecCHHHHHHhHHHHHHHhCCCCceEEEEecccccHHHHHHHHHHhCCCCCCcchhccccCCCHHHHHHHHHHHHHHHHH
Confidence 456677777778887777665 9999998888776 4444444322111 23333332 211 134666778
Q ss_pred hCCCcEEEeCCCCCCCCcc-cccc-cCCCCeEEecccCCCCCCCCCccEE------------EecCCCCCcCc------c
Q 003891 431 EDKIDILVELTGHTANNKL-GMMA-CQPAPVQVTWIGYPNTTGLPTIDYR------------ITDSLADPPET------K 490 (788)
Q Consensus 431 ~d~idilvdl~g~t~~~~~-~~~a-~r~Apvq~~~~g~~~ttg~~~~Dy~------------i~d~~~~p~~~------~ 490 (788)
+.++|+++=. |.|...-. .+.| ++==|| ||.- -|+.+.|-+ +|+-.+.|-+. +
T Consensus 90 ~~kPD~VlVh-GDT~t~lA~alaa~~~~IpV-----~HvE-AGlRt~~~~~PEE~NR~l~~~~S~~hfapte~ar~nLl~ 162 (383)
T COG0381 90 EEKPDLVLVH-GDTNTTLAGALAAFYLKIPV-----GHVE-AGLRTGDLYFPEEINRRLTSHLSDLHFAPTEIARKNLLR 162 (383)
T ss_pred hhCCCEEEEe-CCcchHHHHHHHHHHhCCce-----EEEe-cccccCCCCCcHHHHHHHHHHhhhhhcCChHHHHHHHHH
Confidence 8899977632 22221111 1111 111122 3321 266655544 33334444332 1
Q ss_pred CCCccceEEcCCCccc----cC--CCCCCCCCCC-CCCCCCCCeEEEecCCCC---cCCHHHHHHHHHHHhHcCCcEEEE
Q 003891 491 QKHVEELIRLPECFLC----YT--PSPEAGPVCP-TPALTNGFITFGSFNNLA---KITPKVLQVWARILCAVPNSRLVV 560 (788)
Q Consensus 491 ~~~~e~l~~lp~~~~~----~~--~~~~~~~~~~-~~~~~~~~~~f~~~~~~~---K~~~~~~~~~~~il~~~p~~~l~l 560 (788)
.-+.|+-|.+-|.... +. .......... .....+..+...++.|.. +.-...++...+|+...|+..++.
T Consensus 163 EG~~~~~IfvtGnt~iDal~~~~~~~~~~~~~~~~~~~~~~~~~iLvT~HRreN~~~~~~~i~~al~~i~~~~~~~~viy 242 (383)
T COG0381 163 EGVPEKRIFVTGNTVIDALLNTRDRVLEDSKILAKGLDDKDKKYILVTAHRRENVGEPLEEICEALREIAEEYPDVIVIY 242 (383)
T ss_pred cCCCccceEEeCChHHHHHHHHHhhhccchhhHHhhhccccCcEEEEEcchhhcccccHHHHHHHHHHHHHhCCCceEEE
Confidence 2233433333322110 00 0000000000 022334446677777553 445677888889999998888777
Q ss_pred ecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHHHHhcccccEeecCCCCCCchhHHHHhhhCCceeecCCC-c
Q 003891 561 KCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGS-V 639 (788)
Q Consensus 561 ~~~~~~~~~~~~~l~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~~Dv~Ld~~~~~g~~t~~eal~~GvPvvt~~g~-~ 639 (788)
-..+. +.+++.. ...+|=. +||.+.+++. ..++..+...|=++| ...|.-.=||-..|+||+++... .
T Consensus 243 p~H~~--~~v~e~~---~~~L~~~-~~v~li~pl~-~~~f~~L~~~a~~il----tDSGgiqEEAp~lg~Pvl~lR~~TE 311 (383)
T COG0381 243 PVHPR--PRVRELV---LKRLKNV-ERVKLIDPLG-YLDFHNLMKNAFLIL----TDSGGIQEEAPSLGKPVLVLRDTTE 311 (383)
T ss_pred eCCCC--hhhhHHH---HHHhCCC-CcEEEeCCcc-hHHHHHHHHhceEEE----ecCCchhhhHHhcCCcEEeeccCCC
Confidence 44332 2233222 2444544 7899999887 788888888887776 45566678999999999998754 3
Q ss_pred cCccchhHHHhhhCCcccccCCHHHHHHHHHHHhcCHHHHHHHHH
Q 003891 640 HAHNVGVSLLTKVGLKHLIAKNEDEYVQLALQLASDVTALANLRM 684 (788)
Q Consensus 640 ~~~r~~~~~l~~~gl~~~ia~~~~~y~~~a~~l~~d~~~~~~~r~ 684 (788)
-..++.+ |-.-+|..+.+.-++.+..+.+|++..++|+.
T Consensus 312 RPE~v~a------gt~~lvg~~~~~i~~~~~~ll~~~~~~~~m~~ 350 (383)
T COG0381 312 RPEGVEA------GTNILVGTDEENILDAATELLEDEEFYERMSN 350 (383)
T ss_pred Cccceec------CceEEeCccHHHHHHHHHHHhhChHHHHHHhc
Confidence 4456655 55557777889999999999999988777765
No 500
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.99 E-value=8.6 Score=42.99 Aligned_cols=155 Identities=16% Similarity=0.134 Sum_probs=98.2
Q ss_pred cCCHHHHHHHHHHHHHh------------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc-----------------
Q 003891 146 EGDINQGVAYYKKALYY------------NWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHF----------------- 196 (788)
Q Consensus 146 ~g~~~~A~~~~~~al~~------------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~----------------- 196 (788)
...|++|...|.-+... .|-+.+.+..++.+...+|+.+.|....++++-.
T Consensus 251 s~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cR 330 (665)
T KOG2422|consen 251 SNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCR 330 (665)
T ss_pred chHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhcccccccccccc
Confidence 45678888888877765 3445678889999999999998888888777632
Q ss_pred ----CCCCHH---HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHH-HcCCHHHHHHHHHHH-----H
Q 003891 197 ----NPHCAE---ACNNLGVIYKDRDNLDKAVECYQMALSIKPN-FSQSLNNLGVVYT-VQGKMDAAAEMIEKA-----I 262 (788)
Q Consensus 197 ----~p~~~~---~~~~la~~~~~~g~~~eA~~~~~~al~~~p~-~~~~~~~la~~~~-~~g~~~eA~~~l~ka-----l 262 (788)
.|.+-. +++..-..+.+.|-+..|.++.+-.++++|. ++-+...+...|. +..+|+=-++.++.. +
T Consensus 331 L~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l 410 (665)
T KOG2422|consen 331 LPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKL 410 (665)
T ss_pred CcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccH
Confidence 122222 2233344556678888888888888888887 6665555555443 445555555555444 2
Q ss_pred HhCCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhhCCC
Q 003891 263 AANPTYAEAYNNLGVLYRDAGS---ISLAIDAYEQCLKIDPD 301 (788)
Q Consensus 263 ~~~p~~~~~~~~la~~~~~~g~---~~eA~~~~~~al~l~p~ 301 (788)
..-|+.+ .-..+|..|..... .+.|...+.+|++..|.
T Consensus 411 ~~~PN~~-yS~AlA~f~l~~~~~~~rqsa~~~l~qAl~~~P~ 451 (665)
T KOG2422|consen 411 SQLPNFG-YSLALARFFLRKNEEDDRQSALNALLQALKHHPL 451 (665)
T ss_pred hhcCCch-HHHHHHHHHHhcCChhhHHHHHHHHHHHHHhCcH
Confidence 2234322 23345555555544 56677778888877773
Done!