Query 003891
Match_columns 788
No_of_seqs 1359 out of 3769
Neff 9.2
Searched_HMMs 29240
Date Mon Mar 25 07:26:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003891.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003891hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gyw_A UDP-N-acetylglucosamine 100.0 2E-117 6E-122 1042.4 63.7 583 133-725 9-718 (723)
2 3q3e_A HMW1C-like glycosyltran 100.0 1.8E-81 6.3E-86 698.0 32.3 352 350-718 271-629 (631)
3 2vsy_A XCC0866; transferase, g 100.0 2.4E-65 8.2E-70 593.8 66.6 551 146-718 2-565 (568)
4 1w3b_A UDP-N-acetylglucosamine 100.0 2.6E-32 8.8E-37 300.0 42.3 320 2-330 18-364 (388)
5 1w3b_A UDP-N-acetylglucosamine 100.0 6.8E-32 2.3E-36 296.6 42.4 296 25-329 34-329 (388)
6 2y4t_A DNAJ homolog subfamily 100.0 1.1E-29 3.7E-34 284.3 41.0 319 3-330 12-354 (450)
7 3ieg_A DNAJ homolog subfamily 100.0 2.5E-29 8.5E-34 271.2 42.3 294 2-309 22-346 (359)
8 3ieg_A DNAJ homolog subfamily 100.0 8.8E-29 3E-33 266.9 43.1 304 25-330 4-331 (359)
9 2y4t_A DNAJ homolog subfamily 100.0 1.1E-28 3.7E-33 276.2 42.8 295 2-310 45-370 (450)
10 3hym_B Cell division cycle pro 100.0 3.9E-29 1.4E-33 266.7 36.4 291 7-311 12-312 (330)
11 1fch_A Peroxisomal targeting s 100.0 1.1E-28 3.7E-33 268.2 28.7 290 5-298 48-359 (368)
12 2xpi_A Anaphase-promoting comp 100.0 2.8E-27 9.4E-32 275.0 42.5 275 27-308 308-589 (597)
13 4eqf_A PEX5-related protein; a 100.0 6.9E-29 2.4E-33 270.1 26.7 272 26-297 67-355 (365)
14 2gw1_A Mitochondrial precursor 100.0 1.1E-27 3.6E-32 272.5 36.7 321 2-331 25-441 (514)
15 3fp2_A TPR repeat-containing p 100.0 7.2E-28 2.5E-32 275.8 35.0 288 20-308 21-417 (537)
16 3fp2_A TPR repeat-containing p 100.0 1.4E-27 4.9E-32 273.3 36.1 314 2-332 44-489 (537)
17 3hym_B Cell division cycle pro 100.0 3.3E-27 1.1E-31 251.8 32.7 271 2-286 41-322 (330)
18 1fch_A Peroxisomal targeting s 100.0 6.4E-28 2.2E-32 262.1 27.0 294 32-335 33-360 (368)
19 3cv0_A Peroxisome targeting si 100.0 2.8E-27 9.6E-32 252.0 29.7 277 26-302 23-319 (327)
20 2gw1_A Mitochondrial precursor 100.0 4.1E-27 1.4E-31 267.6 30.8 313 2-331 58-475 (514)
21 2xpi_A Anaphase-promoting comp 100.0 9.6E-26 3.3E-30 262.0 41.0 300 24-332 200-577 (597)
22 4eqf_A PEX5-related protein; a 100.0 5.3E-27 1.8E-31 255.2 25.3 252 45-303 48-315 (365)
23 2h6f_A Protein farnesyltransfe 100.0 9.7E-27 3.3E-31 253.7 25.8 247 26-280 99-364 (382)
24 2h6f_A Protein farnesyltransfe 99.9 1E-26 3.5E-31 253.6 24.4 253 51-311 90-361 (382)
25 4g1t_A Interferon-induced prot 99.9 1.7E-25 5.7E-30 252.1 32.6 300 2-304 70-407 (472)
26 4g1t_A Interferon-induced prot 99.9 4.5E-25 1.5E-29 248.6 35.4 302 24-329 51-396 (472)
27 3uq3_A Heat shock protein STI1 99.9 1.3E-24 4.5E-29 222.8 28.7 238 23-276 4-254 (258)
28 3uq3_A Heat shock protein STI1 99.9 1.4E-24 5E-29 222.5 27.3 243 57-308 4-252 (258)
29 3u4t_A TPR repeat-containing p 99.9 6.2E-25 2.1E-29 227.9 24.7 248 58-309 3-261 (272)
30 3cv0_A Peroxisome targeting si 99.9 2.8E-24 9.5E-29 228.7 29.4 263 58-329 21-310 (327)
31 3u4t_A TPR repeat-containing p 99.9 2.7E-24 9.3E-29 223.0 24.3 250 26-283 5-269 (272)
32 2pl2_A Hypothetical conserved 99.9 7.7E-24 2.6E-28 212.9 25.3 210 55-295 2-211 (217)
33 2pl2_A Hypothetical conserved 99.9 7.2E-24 2.5E-28 213.1 24.4 180 148-330 20-210 (217)
34 3sf4_A G-protein-signaling mod 99.9 2E-24 6.9E-29 237.3 21.2 278 24-302 9-340 (406)
35 3mkr_A Coatomer subunit epsilo 99.9 4.7E-23 1.6E-27 216.9 28.1 260 33-307 8-273 (291)
36 3ro2_A PINS homolog, G-protein 99.9 7.4E-24 2.5E-28 225.5 21.6 277 25-302 6-336 (338)
37 4a1s_A PINS, partner of inscut 99.9 1.3E-23 4.5E-28 231.9 23.0 279 22-301 46-375 (411)
38 3sf4_A G-protein-signaling mod 99.9 2E-23 6.8E-28 229.3 17.9 282 2-287 28-365 (406)
39 3mkr_A Coatomer subunit epsilo 99.9 8.9E-22 3E-26 207.1 27.7 247 27-292 37-288 (291)
40 2q7f_A YRRB protein; TPR, prot 99.9 6.3E-22 2.1E-26 201.1 24.6 217 22-245 21-237 (243)
41 1ouv_A Conserved hypothetical 99.9 7.4E-21 2.5E-25 197.8 32.7 232 54-304 2-257 (273)
42 2q7f_A YRRB protein; TPR, prot 99.9 6.3E-22 2.2E-26 201.1 24.0 218 57-281 22-239 (243)
43 2xm6_A Protein corresponding t 99.9 1.3E-19 4.5E-24 205.4 44.8 274 2-298 62-396 (490)
44 1xnf_A Lipoprotein NLPI; TPR, 99.9 6.3E-22 2.2E-26 205.1 21.6 247 34-292 15-269 (275)
45 2xm6_A Protein corresponding t 99.9 1.3E-19 4.6E-24 205.4 42.2 284 2-308 98-445 (490)
46 1ouv_A Conserved hypothetical 99.9 2.4E-20 8.1E-25 194.0 32.9 227 27-272 9-259 (273)
47 3vtx_A MAMA; tetratricopeptide 99.9 3.3E-21 1.1E-25 187.6 23.6 171 133-303 5-175 (184)
48 2ho1_A Type 4 fimbrial biogene 99.9 1E-20 3.5E-25 193.7 27.8 208 92-306 37-246 (252)
49 4a1s_A PINS, partner of inscut 99.9 2.9E-22 9.9E-27 221.2 17.3 262 2-267 67-375 (411)
50 2ho1_A Type 4 fimbrial biogene 99.9 1.2E-20 4E-25 193.2 27.8 209 58-273 37-247 (252)
51 2vq2_A PILW, putative fimbrial 99.9 2.9E-20 9.8E-25 186.0 29.8 211 89-306 5-219 (225)
52 2vq2_A PILW, putative fimbrial 99.9 3.2E-20 1.1E-24 185.7 29.5 214 54-274 4-221 (225)
53 1xnf_A Lipoprotein NLPI; TPR, 99.9 1.6E-20 5.6E-25 194.5 27.3 242 2-258 24-269 (275)
54 2ooe_A Cleavage stimulation fa 99.9 1.3E-19 4.5E-24 207.6 37.2 312 6-329 2-449 (530)
55 4abn_A Tetratricopeptide repea 99.9 2.6E-21 8.9E-26 218.2 22.5 230 39-295 83-318 (474)
56 3ro2_A PINS homolog, G-protein 99.9 1.1E-21 3.7E-26 208.7 17.5 262 2-267 24-335 (338)
57 3vtx_A MAMA; tetratricopeptide 99.9 2E-20 6.8E-25 182.0 24.9 170 57-233 4-173 (184)
58 2ond_A Cleavage stimulation fa 99.9 1.3E-20 4.4E-25 200.1 25.5 228 2-235 35-275 (308)
59 4abn_A Tetratricopeptide repea 99.9 5.3E-21 1.8E-25 215.7 23.8 211 107-327 83-314 (474)
60 2ooe_A Cleavage stimulation fa 99.9 1.4E-19 4.8E-24 207.4 36.0 322 2-334 31-492 (530)
61 3ulq_A Response regulator aspa 99.9 3.3E-21 1.1E-25 211.1 19.9 241 60-301 105-371 (383)
62 4i17_A Hypothetical protein; T 99.9 9E-20 3.1E-24 184.1 27.7 212 26-244 9-223 (228)
63 2ond_A Cleavage stimulation fa 99.9 9.3E-20 3.2E-24 193.4 28.7 248 41-307 33-301 (308)
64 4i17_A Hypothetical protein; T 99.8 4.6E-19 1.6E-23 178.9 28.5 211 55-279 4-224 (228)
65 3nf1_A KLC 1, kinesin light ch 99.8 9.9E-21 3.4E-25 199.6 14.7 244 54-301 23-310 (311)
66 4gyw_A UDP-N-acetylglucosamine 99.8 9.7E-20 3.3E-24 213.7 21.3 171 54-231 5-175 (723)
67 3ulq_A Response regulator aspa 99.8 8.3E-20 2.9E-24 200.0 18.7 239 26-266 105-370 (383)
68 3q15_A PSP28, response regulat 99.8 4.2E-19 1.4E-23 194.1 23.4 239 60-299 103-366 (378)
69 3nf1_A KLC 1, kinesin light ch 99.8 7.3E-20 2.5E-24 192.9 16.7 241 23-267 26-310 (311)
70 3e4b_A ALGK; tetratricopeptide 99.8 2.8E-18 9.7E-23 192.1 27.0 280 2-308 22-359 (452)
71 1hz4_A MALT regulatory protein 99.8 4.5E-18 1.5E-22 185.2 27.9 281 20-300 10-324 (373)
72 1qqe_A Vesicular transport pro 99.8 3.3E-19 1.1E-23 187.6 17.6 245 42-306 3-277 (292)
73 3e4b_A ALGK; tetratricopeptide 99.8 9.4E-18 3.2E-22 187.9 30.0 303 2-335 57-422 (452)
74 3qky_A Outer membrane assembly 99.8 2E-18 7E-23 178.1 22.3 217 51-288 8-251 (261)
75 3dra_A Protein farnesyltransfe 99.8 1.1E-17 3.8E-22 175.2 27.8 235 75-309 50-299 (306)
76 3dra_A Protein farnesyltransfe 99.8 2E-17 7E-22 173.2 29.6 238 34-278 42-302 (306)
77 1qqe_A Vesicular transport pro 99.8 1.4E-18 4.9E-23 182.8 19.7 251 2-279 4-284 (292)
78 3q15_A PSP28, response regulat 99.8 1.8E-18 6.1E-23 189.1 20.4 239 25-265 102-366 (378)
79 3qky_A Outer membrane assembly 99.8 7.2E-18 2.5E-22 174.0 21.2 216 10-256 8-253 (261)
80 2pzi_A Probable serine/threoni 99.8 3.9E-18 1.3E-22 200.8 20.9 187 53-250 389-583 (681)
81 3as5_A MAMA; tetratricopeptide 99.8 1.7E-17 5.7E-22 160.1 21.3 173 133-305 8-180 (186)
82 2pzi_A Probable serine/threoni 99.8 1.3E-17 4.3E-22 196.5 23.9 187 12-216 389-583 (681)
83 4ga2_A E3 SUMO-protein ligase 99.8 2.7E-18 9.3E-23 161.4 11.3 146 139-284 3-149 (150)
84 1hz4_A MALT regulatory protein 99.8 2E-16 7E-21 172.0 27.7 275 58-333 14-321 (373)
85 3edt_B KLC 2, kinesin light ch 99.7 9.7E-18 3.3E-22 173.6 15.9 225 71-299 14-282 (283)
86 3urz_A Uncharacterized protein 99.7 2.2E-17 7.6E-22 164.3 16.7 168 26-199 6-189 (208)
87 3dss_A Geranylgeranyl transfer 99.7 2.3E-15 8E-20 158.4 31.6 240 35-305 40-311 (331)
88 3edt_B KLC 2, kinesin light ch 99.7 1.9E-17 6.5E-22 171.4 15.4 227 35-265 12-282 (283)
89 3as5_A MAMA; tetratricopeptide 99.7 2.3E-16 7.8E-21 152.0 22.0 98 27-124 11-108 (186)
90 3urz_A Uncharacterized protein 99.7 4.1E-17 1.4E-21 162.4 17.0 167 136-303 7-191 (208)
91 4ga2_A E3 SUMO-protein ligase 99.7 8.9E-18 3E-22 157.9 10.4 147 172-320 2-149 (150)
92 2yhc_A BAMD, UPF0169 lipoprote 99.7 4.3E-16 1.5E-20 156.9 22.5 207 58-304 4-219 (225)
93 1xi4_A Clathrin heavy chain; a 99.7 4.7E-15 1.6E-19 176.6 32.8 266 30-334 1055-1342(1630)
94 3dss_A Geranylgeranyl transfer 99.7 4.3E-15 1.5E-19 156.4 29.0 206 70-306 41-275 (331)
95 2yhc_A BAMD, UPF0169 lipoprote 99.7 1.6E-15 5.4E-20 152.8 22.5 187 25-235 5-218 (225)
96 2ifu_A Gamma-SNAP; membrane fu 99.7 2.9E-16 1E-20 166.3 17.6 204 37-267 4-226 (307)
97 3q7a_A Farnesyltransferase alp 99.7 8.9E-15 3E-19 154.6 28.2 190 27-216 57-257 (349)
98 3oy2_A Glycosyltransferase B73 99.7 3.3E-16 1.1E-20 173.2 17.2 338 356-715 2-393 (413)
99 4gco_A Protein STI-1; structur 99.7 4.5E-16 1.5E-20 141.4 14.8 113 196-308 8-120 (126)
100 4gco_A Protein STI-1; structur 99.7 6.6E-16 2.3E-20 140.3 15.4 122 158-279 4-125 (126)
101 2ifu_A Gamma-SNAP; membrane fu 99.7 5.6E-16 1.9E-20 164.1 16.6 205 70-307 3-232 (307)
102 1xi4_A Clathrin heavy chain; a 99.7 2E-14 6.7E-19 171.4 31.0 281 3-326 1089-1376(1630)
103 3q7a_A Farnesyltransferase alp 99.7 8.4E-15 2.9E-19 154.8 24.4 244 59-308 55-342 (349)
104 2x6q_A Trehalose-synthase TRET 99.7 4.2E-15 1.4E-19 164.5 23.2 337 353-712 39-414 (416)
105 3okp_A GDP-mannose-dependent a 99.7 2.7E-16 9.4E-21 172.4 12.9 337 354-714 4-381 (394)
106 2r5s_A Uncharacterized protein 99.6 9E-16 3.1E-20 148.2 13.8 161 136-297 9-172 (176)
107 2r5s_A Uncharacterized protein 99.6 1.1E-15 3.6E-20 147.6 13.6 168 55-229 3-172 (176)
108 3qou_A Protein YBBN; thioredox 99.6 7.2E-15 2.5E-19 153.9 20.8 170 53-229 112-283 (287)
109 1b89_A Protein (clathrin heavy 99.6 2.7E-16 9.2E-21 169.8 9.7 262 26-325 34-302 (449)
110 3qou_A Protein YBBN; thioredox 99.6 7.8E-15 2.7E-19 153.7 20.3 169 122-297 113-283 (287)
111 3gyz_A Chaperone protein IPGC; 99.6 4.1E-16 1.4E-20 146.2 9.3 116 188-303 23-138 (151)
112 2vsy_A XCC0866; transferase, g 99.6 1.3E-14 4.3E-19 167.6 21.8 165 37-208 2-169 (568)
113 1b89_A Protein (clathrin heavy 99.6 1.2E-15 4.1E-20 164.7 11.3 238 35-313 14-251 (449)
114 1p5q_A FKBP52, FK506-binding p 99.6 3.6E-16 1.2E-20 167.8 6.2 185 105-298 78-294 (336)
115 2gek_A Phosphatidylinositol ma 99.6 8.4E-15 2.9E-19 161.3 17.0 331 351-715 17-386 (406)
116 3gyz_A Chaperone protein IPGC; 99.6 2.1E-15 7.3E-20 141.3 10.2 121 149-269 18-138 (151)
117 4f3v_A ESX-1 secretion system 99.6 2.3E-15 8E-20 153.9 10.5 217 96-323 11-260 (282)
118 3rjv_A Putative SEL1 repeat pr 99.6 1.2E-13 4E-18 137.7 21.8 173 77-264 5-197 (212)
119 2fo7_A Synthetic consensus TPR 99.6 1E-13 3.4E-18 125.5 19.0 134 168-301 2-135 (136)
120 2vgx_A Chaperone SYCD; alterna 99.6 1.1E-14 3.8E-19 136.2 12.8 120 187-306 7-126 (148)
121 2iuy_A Avigt4, glycosyltransfe 99.6 4.5E-14 1.5E-18 151.8 19.3 300 355-715 4-338 (342)
122 3rjv_A Putative SEL1 repeat pr 99.6 1.6E-13 5.5E-18 136.7 22.0 185 41-242 3-207 (212)
123 4f3v_A ESX-1 secretion system 99.6 9.6E-15 3.3E-19 149.4 12.8 212 62-276 11-248 (282)
124 2c2l_A CHIP, carboxy terminus 99.6 1E-14 3.5E-19 152.3 13.2 193 26-264 6-199 (281)
125 1p5q_A FKBP52, FK506-binding p 99.6 7.1E-16 2.4E-20 165.5 2.7 199 38-264 79-294 (336)
126 3c48_A Predicted glycosyltrans 99.5 4.4E-14 1.5E-18 157.3 16.5 184 521-715 238-428 (438)
127 2vgx_A Chaperone SYCD; alterna 99.5 1.1E-14 3.9E-19 136.1 9.7 121 152-272 6-126 (148)
128 2c2l_A CHIP, carboxy terminus 99.5 2.7E-14 9.2E-19 149.1 13.2 197 91-299 3-200 (281)
129 2jjm_A Glycosyl transferase, g 99.5 3.4E-14 1.2E-18 155.9 14.2 276 423-719 89-392 (394)
130 2xcb_A PCRH, regulatory protei 99.5 5.2E-14 1.8E-18 130.5 12.6 120 188-307 5-124 (142)
131 2fo7_A Synthetic consensus TPR 99.5 4.5E-13 1.5E-17 121.1 18.3 133 135-267 3-135 (136)
132 2xcb_A PCRH, regulatory protei 99.5 5.6E-14 1.9E-18 130.3 12.0 120 4-130 5-124 (142)
133 1hh8_A P67PHOX, NCF-2, neutrop 99.5 5.6E-13 1.9E-17 132.1 19.8 133 169-304 8-156 (213)
134 2qfc_A PLCR protein; TPR, HTH, 99.5 7.4E-13 2.5E-17 138.9 20.8 176 91-298 74-266 (293)
135 1dce_A Protein (RAB geranylger 99.5 1.1E-13 3.6E-18 158.5 14.4 195 108-302 45-271 (567)
136 1a17_A Serine/threonine protei 99.5 1.2E-12 4E-17 123.8 18.8 132 167-298 13-146 (166)
137 3upv_A Heat shock protein STI1 99.5 5.8E-13 2E-17 120.3 15.8 110 169-278 6-121 (126)
138 1hh8_A P67PHOX, NCF-2, neutrop 99.5 6.1E-13 2.1E-17 131.9 17.2 152 134-300 7-174 (213)
139 2qfc_A PLCR protein; TPR, HTH, 99.5 1.7E-12 5.9E-17 136.1 21.5 165 166-330 74-262 (293)
140 4e6h_A MRNA 3'-END-processing 99.5 3.4E-11 1.2E-15 139.6 34.1 112 3-121 52-176 (679)
141 2e2e_A Formate-dependent nitri 99.5 2.8E-13 9.7E-18 130.3 13.9 128 178-305 21-151 (177)
142 2r60_A Glycosyl transferase, g 99.5 6.6E-13 2.2E-17 150.6 19.2 184 522-716 258-463 (499)
143 3upv_A Heat shock protein STI1 99.5 1.3E-12 4.6E-17 117.9 17.4 114 23-136 3-122 (126)
144 2e2e_A Formate-dependent nitri 99.5 3.8E-13 1.3E-17 129.4 14.0 130 143-272 20-152 (177)
145 3u3w_A Transcriptional activat 99.5 1.4E-12 4.6E-17 136.9 19.4 177 95-299 78-267 (293)
146 4gcn_A Protein STI-1; structur 99.5 5.3E-13 1.8E-17 121.1 14.0 113 58-171 8-120 (127)
147 3sz7_A HSC70 cochaperone (SGT) 99.5 7.9E-13 2.7E-17 125.6 15.4 115 198-312 8-122 (164)
148 3s28_A Sucrose synthase 1; gly 99.5 5.4E-13 1.8E-17 156.6 17.0 186 523-718 569-777 (816)
149 3mv2_B Coatomer subunit epsilo 99.5 3.5E-12 1.2E-16 132.1 21.0 246 33-306 22-290 (310)
150 1a17_A Serine/threonine protei 99.5 4.3E-12 1.5E-16 119.8 20.2 138 20-162 9-146 (166)
151 2lni_A Stress-induced-phosphop 99.5 1.2E-12 4E-17 118.6 15.6 121 164-284 13-133 (133)
152 2fbn_A 70 kDa peptidylprolyl i 99.4 1.4E-13 4.8E-18 135.3 9.7 151 146-296 17-184 (198)
153 3u3w_A Transcriptional activat 99.4 1.3E-12 4.5E-17 137.0 17.7 170 27-196 78-266 (293)
154 3qhp_A Type 1 capsular polysac 99.4 5.7E-13 2E-17 127.0 13.2 158 527-703 3-165 (166)
155 2vyi_A SGTA protein; chaperone 99.4 1.3E-12 4.6E-17 117.5 14.5 121 165-285 10-130 (131)
156 1dce_A Protein (RAB geranylger 99.4 4E-12 1.4E-16 145.4 21.9 166 147-312 43-235 (567)
157 2bfw_A GLGA glycogen synthase; 99.4 1.8E-12 6.2E-17 127.6 16.2 155 521-691 32-197 (200)
158 3sz7_A HSC70 cochaperone (SGT) 99.4 1.7E-12 6E-17 123.2 14.7 116 164-279 8-123 (164)
159 3fro_A GLGA glycogen synthase; 99.4 7.2E-13 2.5E-17 147.2 13.9 176 521-714 247-432 (439)
160 1kt0_A FKBP51, 51 kDa FK506-bi 99.4 1.4E-13 4.9E-18 154.0 7.6 152 145-296 246-413 (457)
161 4gcn_A Protein STI-1; structur 99.4 2.5E-12 8.5E-17 116.7 14.5 106 20-125 4-116 (127)
162 1na0_A Designed protein CTPR3; 99.4 1.1E-11 3.9E-16 110.3 18.2 117 167-283 9-125 (125)
163 1hxi_A PEX5, peroxisome target 99.4 2.6E-12 9E-17 115.4 13.0 101 203-303 19-119 (121)
164 2hr2_A Hypothetical protein; a 99.4 2.3E-12 7.9E-17 119.5 12.1 107 202-308 12-141 (159)
165 3q49_B STIP1 homology and U bo 99.4 5.6E-12 1.9E-16 115.2 14.7 104 198-301 6-109 (137)
166 2fbn_A 70 kDa peptidylprolyl i 99.4 7E-13 2.4E-17 130.3 9.2 178 60-262 6-184 (198)
167 2vyi_A SGTA protein; chaperone 99.4 2.8E-11 9.5E-16 108.7 19.1 119 22-140 10-128 (131)
168 2lni_A Stress-induced-phosphop 99.4 1.1E-11 3.6E-16 112.2 15.5 116 24-139 16-131 (133)
169 2f9f_A First mannosyl transfer 99.4 6.6E-13 2.3E-17 128.1 7.7 150 519-686 16-174 (177)
170 2hr2_A Hypothetical protein; a 99.4 3.4E-12 1.2E-16 118.3 12.1 106 23-128 10-138 (159)
171 3rkv_A Putative peptidylprolyl 99.4 1.1E-11 3.8E-16 117.3 16.1 118 22-139 9-145 (162)
172 3gw4_A Uncharacterized protein 99.4 7E-12 2.4E-16 122.8 15.1 157 145-301 4-179 (203)
173 3q49_B STIP1 homology and U bo 99.4 1.2E-11 4.1E-16 113.0 15.5 124 161-284 3-131 (137)
174 1hxi_A PEX5, peroxisome target 99.4 5E-12 1.7E-16 113.6 12.5 100 27-126 20-119 (121)
175 3mv2_B Coatomer subunit epsilo 99.4 5.8E-11 2E-15 123.0 22.0 221 27-272 48-290 (310)
176 1elw_A TPR1-domain of HOP; HOP 99.4 2.1E-11 7.2E-16 107.4 16.1 104 203-306 6-109 (118)
177 3rkv_A Putative peptidylprolyl 99.3 7.1E-12 2.4E-16 118.7 13.1 112 169-280 13-143 (162)
178 2qzs_A Glycogen synthase; glyc 99.3 9.7E-12 3.3E-16 140.3 16.5 170 525-715 291-479 (485)
179 3gw4_A Uncharacterized protein 99.3 4.1E-12 1.4E-16 124.5 11.7 159 35-196 3-176 (203)
180 1elw_A TPR1-domain of HOP; HOP 99.3 4.6E-11 1.6E-15 105.1 17.5 112 24-135 4-115 (118)
181 2iw1_A Lipopolysaccharide core 99.3 3.1E-12 1E-16 139.0 11.6 174 520-711 190-370 (374)
182 1kt0_A FKBP51, 51 kDa FK506-bi 99.3 1.2E-12 4E-17 146.5 8.2 145 37-188 247-406 (457)
183 2dba_A Smooth muscle cell asso 99.3 3E-11 1E-15 111.6 16.1 109 198-306 25-136 (148)
184 1na0_A Designed protein CTPR3; 99.3 7.3E-11 2.5E-15 104.9 18.1 115 24-138 9-123 (125)
185 1rzu_A Glycogen synthase 1; gl 99.3 1.3E-11 4.5E-16 139.2 16.4 168 526-714 291-477 (485)
186 1wao_1 Serine/threonine protei 99.3 3.7E-13 1.3E-17 151.3 3.5 137 169-305 8-157 (477)
187 2kck_A TPR repeat; tetratricop 99.3 9.7E-12 3.3E-16 108.6 11.5 107 197-303 2-111 (112)
188 4e6h_A MRNA 3'-END-processing 99.3 3.2E-10 1.1E-14 131.5 27.4 246 41-305 326-577 (679)
189 1f0k_A MURG, UDP-N-acetylgluco 99.3 4.8E-11 1.6E-15 129.1 19.3 317 355-716 7-361 (364)
190 1wao_1 Serine/threonine protei 99.3 4E-12 1.4E-16 142.9 10.9 136 133-268 6-154 (477)
191 4b4t_Q 26S proteasome regulato 99.3 4.6E-11 1.6E-15 132.2 19.2 170 94-264 57-245 (434)
192 2dba_A Smooth muscle cell asso 99.3 5E-11 1.7E-15 110.0 15.9 120 162-281 23-145 (148)
193 2if4_A ATFKBP42; FKBP-like, al 99.3 3.4E-12 1.2E-16 136.8 8.9 157 131-304 177-334 (338)
194 2xev_A YBGF; tetratricopeptide 99.3 6.1E-11 2.1E-15 106.9 15.7 102 204-305 5-112 (129)
195 2xev_A YBGF; tetratricopeptide 99.3 6.3E-11 2.1E-15 106.8 15.4 105 26-130 4-114 (129)
196 4b4t_Q 26S proteasome regulato 99.3 8E-11 2.7E-15 130.2 18.2 204 95-298 7-245 (434)
197 1elr_A TPR2A-domain of HOP; HO 99.3 3.8E-11 1.3E-15 107.9 12.5 112 168-280 5-123 (131)
198 2kck_A TPR repeat; tetratricop 99.2 5.4E-11 1.8E-15 103.7 12.6 106 13-125 2-110 (112)
199 1ihg_A Cyclophilin 40; ppiase 99.2 5.4E-11 1.8E-15 128.9 15.2 123 169-291 225-363 (370)
200 2if4_A ATFKBP42; FKBP-like, al 99.2 1.9E-11 6.5E-16 130.9 10.7 102 168-269 231-333 (338)
201 1elr_A TPR2A-domain of HOP; HO 99.2 2.5E-10 8.4E-15 102.5 16.2 115 24-139 4-125 (131)
202 1zu2_A Mitochondrial import re 99.2 2.5E-11 8.4E-16 112.3 9.3 91 36-126 14-125 (158)
203 1zu2_A Mitochondrial import re 99.2 3E-11 1E-15 111.8 9.8 94 215-308 16-130 (158)
204 1ihg_A Cyclophilin 40; ppiase 99.2 1.5E-10 5.2E-15 125.3 17.1 125 16-140 215-355 (370)
205 3ro3_A PINS homolog, G-protein 99.2 7.3E-11 2.5E-15 110.1 12.6 133 169-301 11-161 (164)
206 3ro3_A PINS homolog, G-protein 99.2 7.5E-11 2.6E-15 110.0 12.6 141 22-163 7-159 (164)
207 3k9i_A BH0479 protein; putativ 99.2 4.1E-11 1.4E-15 106.6 8.7 93 214-306 3-98 (117)
208 2uy1_A Cleavage stimulation fa 99.2 1.6E-08 5.5E-13 113.7 32.0 253 38-295 28-380 (493)
209 2xci_A KDO-transferase, 3-deox 99.2 4E-11 1.4E-15 130.2 9.9 245 422-691 100-361 (374)
210 3k9i_A BH0479 protein; putativ 99.2 3.6E-11 1.2E-15 107.0 7.8 93 180-272 3-98 (117)
211 3vue_A GBSS-I, granule-bound s 99.2 5.3E-11 1.8E-15 135.1 11.0 162 524-713 325-512 (536)
212 1uqt_A Alpha, alpha-trehalose- 99.1 9.3E-10 3.2E-14 122.7 16.3 175 525-712 254-454 (482)
213 3otg_A CALG1; calicheamicin, T 99.1 4.6E-09 1.6E-13 115.5 19.8 166 523-710 240-408 (412)
214 2uy1_A Cleavage stimulation fa 99.0 1.8E-07 6.2E-12 105.1 31.5 209 76-297 197-412 (493)
215 1vgv_A UDP-N-acetylglucosamine 99.0 6.5E-10 2.2E-14 121.1 11.0 170 524-713 204-377 (384)
216 2x0d_A WSAF; GT4 family, trans 99.0 1.6E-10 5.4E-15 127.1 5.1 151 535-712 253-409 (413)
217 3beo_A UDP-N-acetylglucosamine 99.0 1.2E-09 4E-14 118.6 11.9 167 523-709 203-373 (375)
218 2l6j_A TPR repeat-containing p 99.0 4.6E-10 1.6E-14 98.0 5.5 94 201-294 4-103 (111)
219 2kat_A Uncharacterized protein 99.0 3.7E-09 1.3E-13 93.3 11.3 81 186-266 4-84 (115)
220 2kat_A Uncharacterized protein 99.0 4.7E-09 1.6E-13 92.7 11.8 85 41-125 2-86 (115)
221 3tsa_A SPNG, NDP-rhamnosyltran 98.9 1.3E-08 4.4E-13 111.1 17.4 165 523-710 216-388 (391)
222 1na3_A Designed protein CTPR2; 98.9 9.1E-09 3.1E-13 86.0 12.0 84 200-283 8-91 (91)
223 2l6j_A TPR repeat-containing p 98.9 6.1E-10 2.1E-14 97.2 4.7 94 24-117 4-103 (111)
224 3t5t_A Putative glycosyltransf 98.9 2.2E-08 7.4E-13 110.5 16.2 176 525-715 280-476 (496)
225 2hy7_A Glucuronosyltransferase 98.9 3.6E-09 1.2E-13 116.2 9.4 143 527-711 223-378 (406)
226 1na3_A Designed protein CTPR2; 98.9 2.6E-08 9E-13 83.1 12.5 81 25-105 10-90 (91)
227 3n71_A Histone lysine methyltr 98.8 9.7E-09 3.3E-13 114.6 11.5 127 172-298 314-464 (490)
228 3u64_A Protein TP_0956; tetrat 98.8 9.4E-08 3.2E-12 96.4 17.3 108 195-302 146-273 (301)
229 4fzr_A SSFS6; structural genom 98.8 2E-08 6.9E-13 109.9 13.4 162 523-707 225-397 (398)
230 1klx_A Cysteine rich protein B 98.8 8.5E-08 2.9E-12 87.8 15.5 109 148-264 10-126 (138)
231 2kc7_A BFR218_protein; tetratr 98.8 7.7E-09 2.6E-13 88.4 7.8 91 205-303 4-95 (99)
232 1v4v_A UDP-N-acetylglucosamine 98.8 5.1E-08 1.8E-12 105.7 16.0 144 524-684 197-343 (376)
233 3rsc_A CALG2; TDP, enediyne, s 98.8 8.2E-07 2.8E-11 97.6 25.8 167 522-711 244-414 (415)
234 3ia7_A CALG4; glycosysltransfe 98.8 4.3E-07 1.5E-11 99.2 23.2 169 522-711 228-399 (402)
235 3n71_A Histone lysine methyltr 98.8 2.7E-08 9.3E-13 111.0 13.0 129 136-264 312-464 (490)
236 3ma5_A Tetratricopeptide repea 98.8 1.7E-08 5.8E-13 86.8 8.7 72 231-302 3-74 (100)
237 1klx_A Cysteine rich protein B 98.8 1E-07 3.4E-12 87.4 14.3 111 181-299 9-127 (138)
238 2kc7_A BFR218_protein; tetratr 98.7 1.5E-08 5.2E-13 86.5 7.5 90 28-125 4-94 (99)
239 3s2u_A UDP-N-acetylglucosamine 98.7 3.1E-08 1.1E-12 106.9 11.5 158 536-711 193-357 (365)
240 3ma5_A Tetratricopeptide repea 98.7 6.5E-08 2.2E-12 83.0 11.2 72 53-124 2-73 (100)
241 3oti_A CALG3; calicheamicin, T 98.7 4.8E-07 1.6E-11 98.9 20.0 160 523-709 230-396 (398)
242 3u64_A Protein TP_0956; tetrat 98.7 5.6E-07 1.9E-11 90.8 17.1 183 42-233 50-272 (301)
243 3ly7_A Transcriptional activat 98.7 6.2E-07 2.1E-11 94.4 17.9 57 8-69 185-244 (372)
244 3ly7_A Transcriptional activat 98.6 6.1E-07 2.1E-11 94.4 16.4 146 158-304 185-345 (372)
245 3nb0_A Glycogen [starch] synth 98.6 1.1E-07 3.7E-12 106.9 11.2 135 572-716 473-637 (725)
246 2o6l_A UDP-glucuronosyltransfe 98.5 1.4E-06 4.7E-11 82.8 15.6 138 524-682 20-161 (170)
247 2iyf_A OLED, oleandomycin glyc 98.5 2.8E-07 9.6E-12 101.8 12.0 170 523-714 230-403 (430)
248 3dzc_A UDP-N-acetylglucosamine 98.5 9.2E-07 3.2E-11 96.4 15.1 147 523-685 228-377 (396)
249 3ot5_A UDP-N-acetylglucosamine 98.5 7.3E-07 2.5E-11 97.4 13.1 147 523-685 222-371 (403)
250 1pc2_A Mitochondria fission pr 98.4 1.4E-06 4.7E-11 79.5 10.6 92 216-307 13-109 (152)
251 3bee_A Putative YFRE protein; 98.4 1.7E-06 5.7E-11 73.0 10.2 72 231-302 2-76 (93)
252 2p6p_A Glycosyl transferase; X 98.4 5.9E-06 2E-10 89.6 16.8 162 524-709 209-378 (384)
253 3bee_A Putative YFRE protein; 98.3 3.5E-06 1.2E-10 70.9 10.2 72 54-125 2-76 (93)
254 1pc2_A Mitochondria fission pr 98.3 6.1E-06 2.1E-10 75.3 12.3 92 40-131 14-110 (152)
255 4amg_A Snogd; transferase, pol 98.3 1.1E-05 3.9E-10 87.8 16.6 163 522-708 234-398 (400)
256 3qww_A SET and MYND domain-con 98.3 4.2E-06 1.4E-10 91.7 12.4 93 213-305 310-423 (433)
257 3qwp_A SET and MYND domain-con 98.2 3E-06 1E-10 93.0 10.8 87 178-264 298-400 (429)
258 4hwg_A UDP-N-acetylglucosamine 98.2 9.4E-07 3.2E-11 95.7 6.1 169 520-709 198-374 (385)
259 2v5f_A Prolyl 4-hydroxylase su 98.2 1.2E-05 3.9E-10 69.4 11.5 75 235-309 5-86 (104)
260 3qww_A SET and MYND domain-con 98.2 4.2E-06 1.4E-10 91.7 10.4 96 31-126 305-421 (433)
261 2iya_A OLEI, oleandomycin glyc 98.2 3.3E-05 1.1E-09 84.9 17.6 165 523-710 253-421 (424)
262 2v5f_A Prolyl 4-hydroxylase su 98.2 1.5E-05 5.1E-10 68.7 11.7 76 201-276 5-87 (104)
263 2yjn_A ERYCIII, glycosyltransf 98.1 1.1E-05 3.7E-10 89.4 12.9 160 524-710 266-435 (441)
264 3qwp_A SET and MYND domain-con 98.1 9.1E-06 3.1E-10 89.2 11.4 101 27-127 290-411 (429)
265 4g26_A Pentatricopeptide repea 98.0 0.00081 2.8E-08 75.3 25.4 159 140-298 33-204 (501)
266 1iir_A Glycosyltransferase GTF 98.0 5E-05 1.7E-09 83.2 15.2 157 526-708 239-398 (415)
267 4g26_A Pentatricopeptide repea 97.9 0.0014 4.9E-08 73.3 24.9 182 94-277 28-218 (501)
268 3rhz_A GTF3, nucleotide sugar 97.9 4.1E-05 1.4E-09 81.0 10.7 132 525-689 177-316 (339)
269 1rrv_A Glycosyltransferase GTF 97.8 0.00012 4.1E-09 80.2 13.5 138 526-685 238-379 (416)
270 3hbf_A Flavonoid 3-O-glucosylt 97.8 0.00027 9.4E-09 77.7 16.0 148 523-686 271-424 (454)
271 2c1x_A UDP-glucose flavonoid 3 97.8 0.00013 4.5E-09 80.7 13.5 151 523-687 269-423 (456)
272 3h4t_A Glycosyltransferase GTF 97.8 0.00023 7.8E-09 77.6 15.2 158 524-709 220-381 (404)
273 1nzn_A CGI-135 protein, fissio 97.7 0.00016 5.6E-09 63.4 9.9 92 216-307 16-112 (126)
274 2pq6_A UDP-glucuronosyl/UDP-gl 97.7 0.00038 1.3E-08 77.7 15.4 152 524-688 294-451 (482)
275 1nzn_A CGI-135 protein, fissio 97.6 0.00073 2.5E-08 59.2 11.7 86 187-272 21-111 (126)
276 2acv_A Triterpene UDP-glucosyl 97.4 0.0022 7.6E-08 71.0 16.9 139 524-674 275-424 (463)
277 4h7y_A Dual specificity protei 97.4 0.0024 8.3E-08 57.1 12.9 108 197-305 9-130 (161)
278 4h7y_A Dual specificity protei 97.4 0.002 6.8E-08 57.7 12.3 109 162-271 8-130 (161)
279 2vch_A Hydroquinone glucosyltr 97.2 0.0033 1.1E-07 69.9 15.2 137 524-674 267-428 (480)
280 3ffl_A Anaphase-promoting comp 97.1 0.004 1.4E-07 57.1 11.3 132 169-315 22-165 (167)
281 1y8m_A FIS1; mitochondria, unk 96.9 0.012 4E-07 52.4 12.6 76 232-307 36-115 (144)
282 3ffl_A Anaphase-promoting comp 96.9 0.0056 1.9E-07 56.1 10.7 92 27-118 23-148 (167)
283 1qsa_A Protein (soluble lytic 96.7 0.37 1.3E-05 54.7 26.3 124 173-297 220-347 (618)
284 3o48_A Mitochondria fission 1 96.7 0.012 4E-07 51.7 10.2 75 233-307 38-116 (134)
285 4gns_B Protein CSD3, chitin bi 96.5 0.49 1.7E-05 54.7 25.6 112 2-118 268-397 (754)
286 1y8m_A FIS1; mitochondria, unk 96.5 0.077 2.6E-06 47.2 14.7 76 55-130 36-115 (144)
287 1psw_A ADP-heptose LPS heptosy 96.3 0.02 6.8E-07 60.5 11.9 100 535-645 193-296 (348)
288 3o48_A Mitochondria fission 1 96.3 0.034 1.2E-06 48.8 10.8 74 201-274 40-117 (134)
289 3txn_A 26S proteasome regulato 95.9 0.45 1.5E-05 50.7 19.9 94 171-264 103-210 (394)
290 3mkq_A Coatomer beta'-subunit; 95.8 0.47 1.6E-05 56.0 21.5 97 69-193 610-707 (814)
291 3txn_A 26S proteasome regulato 95.7 0.17 5.8E-06 53.9 15.5 167 133-299 19-211 (394)
292 4gns_B Protein CSD3, chitin bi 95.7 0.071 2.4E-06 61.7 13.2 115 180-295 261-397 (754)
293 3kae_A CDC27, possible protein 95.4 1.5 5.1E-05 39.9 19.6 126 35-168 13-149 (242)
294 3kae_A CDC27, possible protein 95.2 1.7 5.9E-05 39.5 18.3 95 29-128 38-150 (242)
295 3mkq_A Coatomer beta'-subunit; 95.2 0.79 2.7E-05 53.9 20.8 97 35-159 610-707 (814)
296 3tov_A Glycosyl transferase fa 95.0 0.027 9.1E-07 59.7 6.2 98 536-645 198-296 (349)
297 4b4t_P 26S proteasome regulato 94.9 2.1 7.3E-05 46.5 21.3 52 37-88 29-86 (445)
298 2gt1_A Lipopolysaccharide hept 94.6 0.06 2.1E-06 56.3 7.7 95 536-644 191-287 (326)
299 3mkq_B Coatomer subunit alpha; 94.5 0.94 3.2E-05 42.1 14.7 102 177-296 15-116 (177)
300 3hbm_A UDP-sugar hydrolase; PS 94.4 0.13 4.6E-06 52.2 9.5 86 557-657 186-271 (282)
301 3mkq_B Coatomer subunit alpha; 94.2 1.5 5.2E-05 40.7 15.4 45 69-118 16-60 (177)
302 2jzc_A UDP-N-acetylglucosamine 94.2 0.11 3.9E-06 50.7 8.1 62 587-655 115-181 (224)
303 1zbp_A Hypothetical protein VP 93.8 0.94 3.2E-05 44.9 13.8 121 177-304 7-135 (273)
304 1zbp_A Hypothetical protein VP 93.7 0.95 3.2E-05 44.9 13.5 61 210-270 6-66 (273)
305 1qsa_A Protein (soluble lytic 93.3 8.4 0.00029 43.6 22.6 251 4-263 56-347 (618)
306 4b4t_P 26S proteasome regulato 93.2 11 0.00038 40.8 23.3 187 72-263 30-246 (445)
307 2ff4_A Probable regulatory pro 93.2 1.6 5.3E-05 46.6 15.7 92 28-119 119-232 (388)
308 1ya0_A SMG-7 transcript varian 92.6 0.79 2.7E-05 50.5 12.5 81 59-139 153-233 (497)
309 2ff4_A Probable regulatory pro 92.5 1.2 4.1E-05 47.6 13.6 111 174-297 122-233 (388)
310 1ya0_A SMG-7 transcript varian 92.4 0.57 1.9E-05 51.6 11.0 79 203-281 154-232 (497)
311 3spa_A Mtrpol, DNA-directed RN 91.8 2.4 8.4E-05 50.2 15.6 98 168-265 128-231 (1134)
312 4fhn_B Nucleoporin NUP120; pro 91.7 4.9 0.00017 49.4 19.5 139 63-226 817-963 (1139)
313 4ady_A RPN2, 26S proteasome re 91.6 6.7 0.00023 46.3 19.1 274 36-322 386-680 (963)
314 3spa_A Mtrpol, DNA-directed RN 91.3 3.5 0.00012 48.9 16.2 100 24-123 127-232 (1134)
315 4b4t_R RPN7, 26S proteasome re 91.2 0.62 2.1E-05 50.6 9.6 104 58-162 131-237 (429)
316 2gj4_A Glycogen phosphorylase, 91.1 1.2 3.9E-05 51.6 11.9 112 525-638 549-684 (824)
317 4b4t_S RPN3, 26S proteasome re 91.0 0.35 1.2E-05 52.9 7.3 127 176-304 145-305 (523)
318 4b4t_S RPN3, 26S proteasome re 89.8 1.8 6E-05 47.4 11.4 142 144-287 147-329 (523)
319 4ady_A RPN2, 26S proteasome re 89.6 19 0.00065 42.5 20.5 251 61-321 379-644 (963)
320 4fhn_B Nucleoporin NUP120; pro 89.4 3.8 0.00013 50.4 15.6 103 159-261 834-964 (1139)
321 4b4t_R RPN7, 26S proteasome re 89.3 2.8 9.4E-05 45.4 12.8 98 27-124 134-240 (429)
322 2wpv_A GET4, UPF0363 protein Y 82.3 46 0.0016 33.8 20.7 81 165-263 132-216 (312)
323 1l5w_A Maltodextrin phosphoryl 77.8 16 0.00054 42.1 12.5 107 525-633 525-654 (796)
324 2c4m_A Glycogen phosphorylase; 76.8 17 0.00059 41.8 12.5 107 525-633 515-644 (796)
325 2wpv_A GET4, UPF0363 protein Y 73.7 81 0.0028 32.0 18.5 27 233-259 132-158 (312)
326 2l2q_A PTS system, cellobiose- 70.4 16 0.00054 30.7 8.0 76 556-636 5-83 (109)
327 1wy6_A Hypothetical protein ST 66.7 48 0.0016 29.1 9.9 55 244-298 100-154 (172)
328 1e2b_A Enzyme IIB-cellobiose; 65.1 17 0.00059 30.4 7.0 74 558-636 7-80 (106)
329 1wy6_A Hypothetical protein ST 64.0 76 0.0026 27.9 14.9 124 102-229 17-153 (172)
330 2f62_A Nucleoside 2-deoxyribos 63.6 49 0.0017 30.0 10.2 78 557-638 11-107 (161)
331 3nbm_A PTS system, lactose-spe 62.9 3.5 0.00012 34.8 2.2 82 554-640 5-89 (108)
332 2qx5_A Nucleoporin NIC96; mRNA 60.6 1.2E+02 0.0041 34.3 14.9 30 272-302 539-570 (661)
333 4gq2_M Nucleoporin NUP120; bet 59.5 58 0.002 38.9 12.9 36 269-304 897-933 (950)
334 4gq2_M Nucleoporin NUP120; bet 56.9 54 0.0018 39.2 12.0 93 30-126 816-932 (950)
335 2crb_A Nuclear receptor bindin 55.2 25 0.00085 28.3 5.6 34 19-52 10-43 (97)
336 3ax2_A Mitochondrial import re 54.3 20 0.0007 27.6 5.0 32 28-59 21-52 (73)
337 2pln_A HP1043, response regula 53.8 1E+02 0.0034 26.0 10.8 106 554-672 17-130 (137)
338 3lpz_A GET4 (YOR164C homolog); 52.9 2E+02 0.0069 29.3 28.4 82 164-263 133-215 (336)
339 3ksm_A ABC-type sugar transpor 52.3 12 0.0004 37.0 4.5 38 355-392 1-38 (276)
340 1tvm_A PTS system, galactitol- 52.2 25 0.00087 29.7 5.9 65 557-634 23-90 (113)
341 1om2_A Protein (mitochondrial 50.0 38 0.0013 27.6 6.2 43 14-56 10-52 (95)
342 3mm4_A Histidine kinase homolo 49.3 90 0.0031 29.0 10.2 110 555-673 61-194 (206)
343 3lpz_A GET4 (YOR164C homolog); 48.2 2.4E+02 0.0082 28.8 30.0 83 200-282 185-295 (336)
344 3uzd_A 14-3-3 protein gamma; s 46.5 2.1E+02 0.0073 27.7 13.0 46 218-263 148-202 (248)
345 3j20_B 30S ribosomal protein S 45.4 29 0.001 32.7 5.6 88 547-638 56-143 (202)
346 2br9_A 14-3-3E, 14-3-3 protein 44.2 2.2E+02 0.0077 27.3 11.9 164 95-263 8-201 (234)
347 3sho_A Transcriptional regulat 43.1 1.1E+02 0.0038 27.8 9.6 96 537-638 23-123 (187)
348 3t5v_B Nuclear mRNA export pro 41.3 36 0.0012 36.7 6.3 28 271-298 222-249 (455)
349 3t5v_B Nuclear mRNA export pro 41.3 1.5E+02 0.005 31.9 11.1 63 63-125 181-254 (455)
350 3o1i_D Periplasmic protein TOR 41.2 1E+02 0.0035 30.3 9.8 92 352-465 3-94 (304)
351 3p9z_A Uroporphyrinogen III co 40.9 15 0.00051 35.6 3.0 98 571-675 122-227 (229)
352 3esl_A Checkpoint serine/threo 40.3 2.4E+02 0.0081 26.4 12.7 79 45-124 58-147 (202)
353 3kht_A Response regulator; PSI 40.2 1.7E+02 0.0058 24.7 10.1 77 555-638 5-90 (144)
354 3lvg_A Clathrin heavy chain 1; 39.9 0.00096 3.3E-08 71.4 -28.7 60 57-121 53-112 (624)
355 3goe_A DNA repair protein RAD6 39.8 28 0.00095 27.1 3.6 55 554-612 20-82 (82)
356 3esl_A Checkpoint serine/threo 38.7 2.5E+02 0.0086 26.3 14.0 49 251-299 95-145 (202)
357 2w2u_A Hypothetical P60 katani 37.9 52 0.0018 26.0 5.2 17 246-262 30-46 (83)
358 2npm_A 14-3-3 domain containin 37.3 3E+02 0.01 26.8 14.7 28 95-122 31-58 (260)
359 1k68_A Phytochrome response re 37.3 1.8E+02 0.0061 24.1 10.8 96 556-660 3-114 (140)
360 3heb_A Response regulator rece 37.3 2E+02 0.0067 24.6 11.6 75 557-638 6-98 (152)
361 1ygp_A Yeast glycogen phosphor 37.1 1.4E+02 0.0049 34.5 10.5 97 536-634 612-738 (879)
362 2ijq_A Hypothetical protein; s 37.1 1.7E+02 0.0058 26.3 9.1 68 95-162 35-104 (161)
363 2qx5_A Nucleoporin NIC96; mRNA 36.6 4.9E+02 0.017 29.3 14.9 31 237-268 538-570 (661)
364 1o9d_A 14-3-3-like protein C; 36.5 3.1E+02 0.011 26.8 14.8 46 218-263 152-206 (260)
365 2v6y_A AAA family ATPase, P60 36.4 56 0.0019 25.8 5.2 16 246-261 22-37 (83)
366 3td3_A Outer membrane protein 36.2 67 0.0023 27.3 6.2 53 541-593 31-94 (123)
367 2hqs_H Peptidoglycan-associate 34.8 62 0.0021 27.4 5.7 74 541-614 23-113 (118)
368 3ubw_A 14-3-3E, 14-3-3 protein 34.8 3.3E+02 0.011 26.5 16.0 164 95-263 34-227 (261)
369 2w2u_A Hypothetical P60 katani 34.2 1.7E+02 0.0058 23.0 8.0 31 22-52 17-47 (83)
370 4erh_A Outer membrane protein 33.8 48 0.0016 29.4 5.0 60 534-593 29-103 (148)
371 2cwy_A Hypothetical protein TT 33.7 1.6E+02 0.0056 23.7 7.7 62 97-161 6-67 (94)
372 1o9d_A 14-3-3-like protein C; 33.2 3.5E+02 0.012 26.4 13.0 46 252-297 152-206 (260)
373 4es6_A Uroporphyrinogen-III sy 32.7 51 0.0017 32.2 5.5 109 552-671 130-252 (254)
374 1vi6_A 30S ribosomal protein S 32.7 44 0.0015 31.6 4.7 88 547-638 60-147 (208)
375 3t5x_A PCI domain-containing p 32.5 80 0.0027 29.7 6.6 31 94-124 16-46 (203)
376 3h1g_A Chemotaxis protein CHEY 32.3 2.1E+02 0.0073 23.5 11.0 106 556-671 6-123 (129)
377 3en0_A Cyanophycinase; serine 32.2 96 0.0033 31.1 7.4 81 534-621 35-121 (291)
378 2aiz_P Outer membrane protein 32.1 64 0.0022 28.1 5.4 58 536-593 39-109 (134)
379 1hym_A CMTI-V, hydrolyzed cucu 31.9 17 0.00057 25.1 1.2 27 412-438 8-34 (45)
380 4had_A Probable oxidoreductase 31.7 80 0.0027 32.4 7.2 75 547-634 40-115 (350)
381 2ijq_A Hypothetical protein; s 31.7 2E+02 0.0069 25.9 8.7 22 276-297 82-103 (161)
382 3ax2_A Mitochondrial import re 31.3 1.1E+02 0.0037 23.5 5.8 27 207-233 23-49 (73)
383 3lvg_A Clathrin heavy chain 1; 31.2 0.17 5.9E-06 54.4 -13.3 168 30-222 150-325 (624)
384 3uzd_A 14-3-3 protein gamma; s 30.4 3.8E+02 0.013 25.9 13.9 46 252-297 148-202 (248)
385 2iz6_A Molybdenum cofactor car 30.4 62 0.0021 29.7 5.2 64 606-674 107-173 (176)
386 2kgw_A Outer membrane protein 30.3 68 0.0023 27.6 5.3 67 525-593 24-103 (129)
387 3uuw_A Putative oxidoreductase 29.8 71 0.0024 32.1 6.2 73 546-634 22-95 (308)
388 1g60_A Adenine-specific methyl 29.7 21 0.00071 35.3 2.0 29 605-634 211-239 (260)
389 1om2_A Protein (mitochondrial 29.1 1.1E+02 0.0039 24.8 5.8 30 136-165 23-52 (95)
390 3t5x_A PCI domain-containing p 28.8 1.3E+02 0.0044 28.2 7.4 33 24-56 14-46 (203)
391 1s2d_A Purine trans deoxyribos 28.6 73 0.0025 29.0 5.3 36 601-636 76-116 (167)
392 2v6y_A AAA family ATPase, P60 28.0 2.2E+02 0.0074 22.3 8.1 30 23-52 10-39 (83)
393 3re2_A Predicted protein; meni 28.0 2.6E+02 0.009 28.7 9.4 93 171-278 239-345 (472)
394 1i3c_A Response regulator RCP1 28.0 2.8E+02 0.0095 23.5 10.5 96 556-660 9-120 (149)
395 2crb_A Nuclear receptor bindin 27.4 93 0.0032 25.0 4.9 33 128-160 10-42 (97)
396 3l7i_A Teichoic acid biosynthe 27.2 3.1E+02 0.011 31.2 11.9 117 586-713 598-719 (729)
397 3db2_A Putative NADPH-dependen 27.0 1.2E+02 0.004 31.2 7.4 76 545-634 19-95 (354)
398 3kuu_A Phosphoribosylaminoimid 26.9 3.6E+02 0.012 24.5 12.2 98 557-656 15-117 (174)
399 3oon_A Outer membrane protein 26.8 97 0.0033 26.2 5.6 54 541-594 34-98 (123)
400 1e5p_A Aphrodisin; lipocalin, 26.7 66 0.0022 28.3 4.7 38 556-593 107-145 (151)
401 3v5n_A Oxidoreductase; structu 26.5 93 0.0032 33.0 6.6 78 547-634 56-139 (417)
402 2k1s_A Inner membrane lipoprot 26.4 1E+02 0.0034 27.3 5.8 58 536-593 43-113 (149)
403 2j48_A Two-component sensor ki 26.4 2.4E+02 0.0082 22.2 9.3 99 557-669 3-112 (119)
404 3re2_A Predicted protein; meni 26.0 3.2E+02 0.011 28.0 9.6 79 204-297 238-324 (472)
405 3mv2_A Coatomer subunit alpha; 25.9 5.2E+02 0.018 26.0 15.4 28 276-303 214-241 (325)
406 1wfd_A Hypothetical protein 15 25.8 1E+02 0.0035 24.8 5.2 16 246-261 26-41 (93)
407 2hlv_A Odorant-binding protein 25.7 77 0.0026 28.2 5.0 39 556-594 114-153 (160)
408 3to5_A CHEY homolog; alpha(5)b 25.5 3.2E+02 0.011 23.4 10.7 108 555-672 12-130 (134)
409 1jr2_A Uroporphyrinogen-III sy 25.4 67 0.0023 32.0 5.0 110 554-673 156-280 (286)
410 2ixa_A Alpha-N-acetylgalactosa 25.2 1.7E+02 0.0058 31.2 8.5 84 547-634 36-120 (444)
411 1qkk_A DCTD, C4-dicarboxylate 24.9 3.2E+02 0.011 23.2 13.1 136 556-718 4-148 (155)
412 3egc_A Putative ribose operon 24.9 1.5E+02 0.0052 28.9 7.7 103 352-481 6-108 (291)
413 3u5c_A 40S ribosomal protein S 24.9 90 0.0031 30.4 5.4 79 556-638 71-149 (252)
414 4a5x_A MITD1, MIT domain-conta 24.6 96 0.0033 24.6 4.7 29 24-52 16-44 (86)
415 4f3y_A DHPR, dihydrodipicolina 24.5 50 0.0017 32.8 3.7 30 605-634 72-102 (272)
416 1k66_A Phytochrome response re 24.1 3.1E+02 0.011 22.8 10.5 96 556-660 7-121 (149)
417 1bj7_A D 2; allergen, lipocali 24.0 73 0.0025 28.2 4.5 38 556-593 112-150 (156)
418 2hqr_A Putative transcriptiona 24.0 3E+02 0.01 25.4 9.3 96 568-673 10-113 (223)
419 1boo_A Protein (N-4 cytosine-s 23.7 37 0.0013 34.8 2.6 29 605-634 251-279 (323)
420 4b4t_O 26S proteasome regulato 23.7 3.8E+02 0.013 27.9 10.7 59 238-296 130-196 (393)
421 3ldt_A Outer membrane protein, 23.6 1.4E+02 0.0046 27.1 6.2 53 541-593 71-133 (169)
422 3rot_A ABC sugar transporter, 23.0 1.2E+02 0.0042 29.8 6.5 40 353-392 2-41 (297)
423 2cpt_A SKD1 protein, vacuolar 22.9 1.1E+02 0.0038 25.9 5.1 33 217-264 15-47 (117)
424 1wfd_A Hypothetical protein 15 22.7 1.4E+02 0.0047 24.1 5.4 28 24-51 15-42 (93)
425 3ors_A N5-carboxyaminoimidazol 22.6 4.2E+02 0.014 23.8 11.4 94 564-658 12-110 (163)
426 3cyp_B Chemotaxis protein MOTB 22.5 1.3E+02 0.0044 26.2 5.7 58 536-593 12-88 (138)
427 3mz0_A Inositol 2-dehydrogenas 22.5 1.3E+02 0.0044 30.7 6.7 77 546-634 17-95 (344)
428 3iz6_A 40S ribosomal protein S 22.4 87 0.003 31.3 4.8 79 554-637 75-153 (305)
429 3jy6_A Transcriptional regulat 22.4 2.1E+02 0.0072 27.6 8.1 42 352-393 5-46 (276)
430 1dzk_A PIG OBP, odorant-bindin 22.4 88 0.003 27.6 4.7 38 556-593 113-151 (157)
431 3czc_A RMPB; alpha/beta sandwi 22.4 2.2E+02 0.0076 23.5 6.9 58 556-617 19-78 (110)
432 3u84_A Menin; MLL, JUND, ledgf 22.3 3.6E+02 0.012 28.2 9.4 79 171-264 261-347 (550)
433 2yvq_A Carbamoyl-phosphate syn 22.3 3.8E+02 0.013 23.2 8.8 91 528-634 27-130 (143)
434 2xzm_B RPS0E; ribosome, transl 22.2 1.6E+02 0.0055 28.5 6.6 88 547-638 57-146 (241)
435 2npm_A 14-3-3 domain containin 22.1 5.5E+02 0.019 25.0 16.1 28 61-88 31-58 (260)
436 3gyb_A Transcriptional regulat 22.1 1.6E+02 0.0053 28.6 7.0 66 352-442 3-68 (280)
437 2i2x_B MTAC, methyltransferase 22.1 3.2E+02 0.011 26.5 9.1 106 570-684 139-253 (258)
438 2v6x_A Vacuolar protein sortin 22.0 1.4E+02 0.0047 23.5 5.2 17 246-262 24-40 (85)
439 3dty_A Oxidoreductase, GFO/IDH 22.0 84 0.0029 33.0 5.2 77 548-634 32-114 (398)
440 1r1m_A Outer membrane protein 21.8 1.6E+02 0.0056 26.5 6.3 58 536-593 24-94 (164)
441 2khz_A C-MYC-responsive protei 21.7 1.9E+02 0.0064 26.1 6.8 39 601-639 72-113 (165)
442 4gq4_A Menin; tumor suppressor 21.6 5.2E+02 0.018 27.1 10.4 93 171-278 246-352 (489)
443 3u84_A Menin; MLL, JUND, ledgf 21.5 6.2E+02 0.021 26.5 10.9 80 27-121 260-347 (550)
444 2qvg_A Two component response 21.0 2.8E+02 0.0097 23.0 7.8 103 557-668 9-128 (143)
445 1ydw_A AX110P-like protein; st 20.9 2.2E+02 0.0074 29.2 8.1 78 547-634 22-100 (362)
446 2v6x_A Vacuolar protein sortin 20.8 1.6E+02 0.0055 23.1 5.4 29 24-52 13-41 (85)
447 3hdv_A Response regulator; PSI 20.7 3.5E+02 0.012 22.2 10.0 107 556-673 8-125 (136)
448 3l6u_A ABC-type sugar transpor 20.7 1.5E+02 0.005 29.0 6.5 42 352-393 6-47 (293)
449 1eg2_A Modification methylase 20.6 46 0.0016 34.0 2.6 29 605-634 241-269 (319)
450 3e9m_A Oxidoreductase, GFO/IDH 20.5 1.4E+02 0.005 30.1 6.5 76 546-634 20-96 (330)
451 1h6d_A Precursor form of gluco 20.4 91 0.0031 33.3 5.0 80 546-634 99-179 (433)
452 3re1_A Uroporphyrinogen-III sy 20.2 83 0.0029 31.0 4.4 112 552-673 138-262 (269)
No 1
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=100.00 E-value=1.7e-117 Score=1042.41 Aligned_cols=583 Identities=28% Similarity=0.422 Sum_probs=515.2
Q ss_pred HHHHHHhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 003891 133 AIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYK 212 (788)
Q Consensus 133 a~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 212 (788)
+.++.++|.++..+|++++|+++|+++++++|++..+++++|.+|..+|++++|++.|+++++++|++..+++++|.++.
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg~~l~ 88 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLK 88 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 34556667777778899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 003891 213 DRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAY 292 (788)
Q Consensus 213 ~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~~eA~~~~ 292 (788)
.+|++++|+++|+++++++|++..++.++|.+|..+|++++|++.|+++++++|+++.++.++|.+|..+|++++|.+.|
T Consensus 89 ~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A~~~~ 168 (723)
T 4gyw_A 89 EMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERM 168 (723)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhCCCChhhHH----hHHHHhhhccCCCchHHHHHHHHHHHHHhh----hc-cCCCCCCCCCCCCCCeeEeeccCC
Q 003891 293 EQCLKIDPDSRNAGQ----NRLLAMNYINEGHDDKLFEAHRDWGKRFMR----LY-SQYTSWDNTKDPERPLVIGYVSPD 363 (788)
Q Consensus 293 ~~al~l~p~~~~a~~----~~lla~~~l~~g~~~~~~~~~~~~~~~~~~----~~-~~~~~~~~~~~~~~~lriGyvS~d 363 (788)
++++++.|+...... .......+........ ...+++...... .. ++.....+.+.++++|||||+|+|
T Consensus 169 ~kal~l~~~~~~~~~l~~~~~~~~l~~~~~~~~~~--aia~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~klrIGyvS~d 246 (723)
T 4gyw_A 169 KKLVSIVADQLEKNRLPSVHPHHSMLYPLSHGFRK--AIAERHGNLCLDKINVLHKPPYEHPKDLKLSDGRLRVGYVSSD 246 (723)
T ss_dssp HHHHHHHHHHHHTTCCCSSCTTGGGGSCCCHHHHH--HHHHHHHHHHHHHHHTTTCCCCCCCCSSTTTTTCEEEEEEESC
T ss_pred HHHHHhChhHHhhccCcccchhhhhhhhcCHHHHH--HHHHHHHHhhhhhhhcccCccccCccccccccccceeeeechh
Confidence 999998776433210 0001111111111111 122233322211 11 122223344567899999999999
Q ss_pred cccChhHHhhhhhhcccCCCceEEEEEecccc-CChhhHHHHHHHhhhCCeEEEccCC-CHHHHHHHHHhCCCcEEEeCC
Q 003891 364 YFTHSVSYFIEAPLVYHDYQNYKVVVYSAVVK-ADAKTIRFREKVMKKGGIWRDIYGI-DEKKVAAMVREDKIDILVELT 441 (788)
Q Consensus 364 f~~H~v~~~~~~~l~~~dr~~fev~~Y~~~~~-~D~~t~~~r~~~~~~~~~~~~~~~~-~~~~~a~~i~~d~idilvdl~ 441 (788)
|++|||++|+.+++++||+++|||++|++++. .|..+.+++.. +++|+++.++ ++.+++++|++|+|||||||+
T Consensus 247 f~~H~v~~~~~~~~~~~d~~~fei~~y~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~d~~~a~~i~~d~iDIlidl~ 322 (723)
T 4gyw_A 247 FGNHPTSHLMQSIPGMHNPDKFEVFCYALSPDDGTNFRVKVMAE----ANHFIDLSQIPCNGKAADRIHQDGIHILVNMN 322 (723)
T ss_dssp SSSSHHHHHHTTHHHHSCTTTEEEEEEESSCCCSCHHHHHHHHH----SSEEEEGGGCCCHHHHHHHHHHTTCSEEEESC
T ss_pred hccCcHHHHHHHHHHHhccCceeEEEEEcCCCCccHHHHHHHHh----hccccccccCCcHHHHHHHHHhccceeEEecc
Confidence 99999999999999999999999999998864 35555555553 5899999998 689999999999999999999
Q ss_pred CCCCCCcccccccCCCCeEEecccCCCCCCCCCccEEEecCCCCCcCccCCCccceEEcCCCccccCCCCCCC-------
Q 003891 442 GHTANNKLGMMACQPAPVQVTWIGYPNTTGLPTIDYRITDSLADPPETKQKHVEELIRLPECFLCYTPSPEAG------- 514 (788)
Q Consensus 442 g~t~~~~~~~~a~r~Apvq~~~~g~~~ttg~~~~Dy~i~d~~~~p~~~~~~~~e~l~~lp~~~~~~~~~~~~~------- 514 (788)
|||.++|+.||++|||||||+|||||+|||+++|||+|+|.+++|++.+.+|||||+|||++|+|++|....|
T Consensus 323 g~t~~~r~~i~a~r~APvQv~~lG~p~TtG~~~iDY~i~D~~~~P~~~~~~ysEklirLP~~~~~~d~~~~~p~~~~~~~ 402 (723)
T 4gyw_A 323 GYTKGARNELFALRPAPIQAMWLGYPGTSGALFMDYIITDQETSPAEVAEQYSEKLAYMPHTFFIGDHANMFPHLKKKAV 402 (723)
T ss_dssp SSBTTCCTHHHHTCCSSEEEECSSCSSCCCCTTCCEEEECTTTSCGGGGGGCSSEEEECSSCSCCCCHHHHCGGGSSCEE
T ss_pred CCCCCCcchhhhcCCCCceeeeccCCCCCCCCcCCEEEeCCCCCCchhhhcceeeeeeCCCccccCCccccccccccccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999986321000
Q ss_pred --------------------------------------------------------------------------------
Q 003891 515 -------------------------------------------------------------------------------- 514 (788)
Q Consensus 515 -------------------------------------------------------------------------------- 514 (788)
T Consensus 403 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~~~~~~~~ 482 (723)
T 4gyw_A 403 IDFKSNGHIYDNRIVLNGIDLKAFLDSLPDVKIVKMKCPDGGDNADSSNTALNMPVIPMNTIAEAVIEMINRGQIQITIN 482 (723)
T ss_dssp ECCC---CCCSSSEEEECTTHHHHHHTSSSCEEEC-----------------CEEEECSSHHHHHHHHHHHHTCCEEEET
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence
Q ss_pred -----------------------------CCCCCCCCCCCCeEEEecCCCCcCCHHHHHHHHHHHhHcCCcEEEEecCCC
Q 003891 515 -----------------------------PVCPTPALTNGFITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPF 565 (788)
Q Consensus 515 -----------------------------~~~~~~~~~~~~~~f~~~~~~~K~~~~~~~~~~~il~~~p~~~l~l~~~~~ 565 (788)
+.+..++|+++.|||||||+++||+|+++++|++||++||+|+|||+..+.
T Consensus 483 g~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~R~~~gLp~~~v~f~~fN~~~Ki~p~~~~~W~~IL~~vP~S~L~Ll~~~~ 562 (723)
T 4gyw_A 483 GFSISNGLATTQINNKAATGEEVPRTIIVTTRSQYGLPEDAIVYCNFNQLYKIDPSTLQMWANILKRVPNSVLWLLRFPA 562 (723)
T ss_dssp TEEEEETTCHHHHCHHHHHTSSCCCSEEEEEGGGGTCCTTSEEEECCSCGGGCCHHHHHHHHHHHHHCSSEEEEEEETTG
T ss_pred ccccccccccccccccccccccccccccccchhhcCCCCCCEEEEeCCccccCCHHHHHHHHHHHHhCCCCeEEEEeCcH
Confidence 012345799999999999999999999999999999999999999987652
Q ss_pred CCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHHHHhcccccEeecCCCCCCchhHHHHhhhCCceeecCCCccCccch
Q 003891 566 CCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVG 645 (788)
Q Consensus 566 ~~~~~~~~l~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~~Dv~Ld~~~~~g~~t~~eal~~GvPvvt~~g~~~~~r~~ 645 (788)
..+.++++.++++||+++||+|.+..+ ..+|++.|+.+||+|||||||||||++|||||||||||++|.+|+||+|
T Consensus 563 ---~~~~~l~~~~~~~gi~~~r~~f~~~~~-~~~~l~~~~~~Di~LDt~p~~g~tT~~eal~~GvPvvt~~g~~~~sR~~ 638 (723)
T 4gyw_A 563 ---VGEPNIQQYAQNMGLPQNRIIFSPVAP-KEEHVRRGQLADVCLDTPLCNGHTTGMDVLWAGTPMVTMPGETLASRVA 638 (723)
T ss_dssp ---GGHHHHHHHHHHTTCCGGGEEEEECCC-HHHHHHHGGGCSEEECCSSSCCSHHHHHHHHTTCCEEBCCCSSGGGTHH
T ss_pred ---HHHHHHHHHHHhcCCCcCeEEECCCCC-HHHHHHHhCCCeEEeCCCCcCCHHHHHHHHHcCCCEEEccCCCccHhHH
Confidence 456789999999999999999999987 7999999999999999999999999999999999999999999999999
Q ss_pred hHHHhhhCCcccccCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHHHhcCCCCCch
Q 003891 646 VSLLTKVGLKHLIAKNEDEYVQLALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRNMWHRYCKGDVPSLK 725 (788)
Q Consensus 646 ~~~l~~~gl~~~ia~~~~~y~~~a~~l~~d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~p~~~ 725 (788)
+|||+++|++|||+.|+++||++|++|++|++.|+++|++||+++.+|||||.++|+++||++|++||+|||+|++|..+
T Consensus 639 ~s~l~~~gl~e~ia~~~~~Y~~~a~~la~d~~~l~~lr~~l~~~~~~s~l~d~~~~~~~le~a~~~~w~r~~~G~~p~~~ 718 (723)
T 4gyw_A 639 ASQLTCLGCLELIAKNRQEYEDIAVKLGTDLEYLKKVRGKVWKQRISSPLFNTKQYTMELERLYLQMWEHYAAGNKPDHM 718 (723)
T ss_dssp HHHHHHHTCGGGBCSSHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHSSTTCHHHHHHHHHHHHHHHHHHHHTTCCCCCB
T ss_pred HHHHHHcCCcccccCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCcCcCHHHHHHHHHHHHHHHHHHHHcCCCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999875
No 2
>3q3e_A HMW1C-like glycosyltransferase; N-glycosylation; 2.10A {Actinobacillus pleuropneumoniae serovaorganism_taxid} PDB: 3q3h_A* 3q3i_A
Probab=100.00 E-value=1.8e-81 Score=697.97 Aligned_cols=352 Identities=17% Similarity=0.194 Sum_probs=318.1
Q ss_pred CCCCCeeEeeccCCcccChhHHhhhhhhcccCCCceEEEEEeccccCChhhHHHHHHHhhhCCeEEEccCCC----HHHH
Q 003891 350 DPERPLVIGYVSPDYFTHSVSYFIEAPLVYHDYQNYKVVVYSAVVKADAKTIRFREKVMKKGGIWRDIYGID----EKKV 425 (788)
Q Consensus 350 ~~~~~lriGyvS~df~~H~v~~~~~~~l~~~dr~~fev~~Y~~~~~~D~~t~~~r~~~~~~~~~~~~~~~~~----~~~~ 425 (788)
.++++++|||+|.+|++|+|++++.+++.+ ||++|||+||+ ++..|+.|+ + .+++|+++.+++ ++++
T Consensus 271 ~~~K~l~ig~ls~f~~~HsV~r~~~~~l~~-dR~~FEV~~Ys-~~~~D~~tr---~----~~d~f~~l~~~s~~~~~~~i 341 (631)
T 3q3e_A 271 RNNKPVMVVLLEHFHSAHSIYRTHSTSMIA-AREHFYLIGLG-SPSVDQAGQ---E----VFDEFHLVAGDNMKQKLEFI 341 (631)
T ss_dssp ETTEEEEEEECSSCCTTSHHHHHHHHHHHH-HTTTSEEEEEE-CTTSCHHHH---T----TSSEEEECCCSSHHHHHHHH
T ss_pred CCCCeEEEEEeCcccCCCcHHHHHHHHHHh-hhhcEEEEEEe-CCCCCHHHH---h----cCcEEEECCCCCccccHHHH
Confidence 457889999999999999999999999987 99999999999 777787762 2 358999999998 7899
Q ss_pred HHHHHhCCCcEEEeCCCCCCCCcccccccCCCCeEEecccCCCCCCCCCccEEEecCCCCCcCccCCCccceEEcCCCcc
Q 003891 426 AAMVREDKIDILVELTGHTANNKLGMMACQPAPVQVTWIGYPNTTGLPTIDYRITDSLADPPETKQKHVEELIRLPECFL 505 (788)
Q Consensus 426 a~~i~~d~idilvdl~g~t~~~~~~~~a~r~Apvq~~~~g~~~ttg~~~~Dy~i~d~~~~p~~~~~~~~e~l~~lp~~~~ 505 (788)
+++|++|+|||||||+|||.+.++.++++|||||||+|||||+|||+++|||+|+|+.+.| .+.+|+|+|+|||++++
T Consensus 342 a~~Ir~d~IDILVdL~g~t~~~~i~~aa~RpAPVQvs~lGyp~TTGl~~iDY~i~D~~~~~--~~~~ysEklirLP~~~~ 419 (631)
T 3q3e_A 342 RSVCESNGAAIFYMPSIGMDMTTIFASNTRLAPIQAIALGHPATTHSDFIEYVIVEDDYVG--SEECFSETLLRLPKDAL 419 (631)
T ss_dssp HHHHHHHTCSEEEESCCSSSHHHHHHTTSCCSSEEEEECSSCSCCCCTTCCEEEEEGGGCC--CGGGCSSEEEEECTTSS
T ss_pred HHHHHhcCCCEEEECCCCCCchhHHHHhCCCchheEeccCCCcccCcccCCEEEeCCCCCC--cccCceeeEEECCCCcc
Confidence 9999999999999999999877777778999999999999999999999999999997665 58899999999999999
Q ss_pred ccCCCCCCCCCCCCCCCCC--CCeEEEecCCCCcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCC
Q 003891 506 CYTPSPEAGPVCPTPALTN--GFITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGL 583 (788)
Q Consensus 506 ~~~~~~~~~~~~~~~~~~~--~~~~f~~~~~~~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~~~~l~~~~~~~gi 583 (788)
||+|+...|.+. .+++++ |+|||||||+++|++|+++++|++||+++|+++||++..|. .+....++.+++.++||
T Consensus 420 ~~~p~~~~p~r~-~~~lp~~~G~v~Fg~fn~~~Ki~p~~l~~WarIL~~vP~s~L~l~~~g~-~~g~~~~~~~~~~~~GI 497 (631)
T 3q3e_A 420 PYVPSALAPEKV-DYLLRENPEVVNIGIASTTMKLNPYFLEALKAIRDRAKVKVHFHFALGQ-SNGITHPYVERFIKSYL 497 (631)
T ss_dssp CCCCCTTCCSSC-CCCCCSCCSEEEEEEEECSTTCCHHHHHHHHHHHHHCSSEEEEEEEESS-CCGGGHHHHHHHHHHHH
T ss_pred ccCCcccCCccc-cccCCcCCCeEEEEECCccccCCHHHHHHHHHHHHhCCCcEEEEEecCC-CchhhHHHHHHHHHcCC
Confidence 999987765443 345554 69999999999999999999999999999999998642111 11334555667788999
Q ss_pred CCCcEEEcCCcCCcHHHHHhcccccEeecCCCCCCchhHHHHhhhCCceeecCCCccCccchhHHHhhhCCccc-ccCCH
Q 003891 584 ESLRVDLLPLILLNHDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHL-IAKNE 662 (788)
Q Consensus 584 ~~~rv~~~~~~~~~~~~~~~~~~~Dv~Ld~~~~~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l~~~gl~~~-ia~~~ 662 (788)
+ +||+|.|.++ ..+|++.|+.+|||||||||+||||++|||||||||||++|+.+++|+|+|+|+++|++|| |+.|+
T Consensus 498 ~-~Rv~F~g~~p-~~e~la~y~~aDIfLDpfpy~GgtTtlEALwmGVPVVTl~G~~~asRvgaSlL~~~GLpE~LIA~d~ 575 (631)
T 3q3e_A 498 G-DSATAHPHSP-YHQYLRILHNCDMMVNPFPFGNTNGIIDMVTLGLVGVCKTGAEVHEHIDEGLFKRLGLPEWLIANTV 575 (631)
T ss_dssp G-GGEEEECCCC-HHHHHHHHHTCSEEECCSSSCCSHHHHHHHHTTCCEEEECCSSHHHHHHHHHHHHTTCCGGGEESSH
T ss_pred C-ccEEEcCCCC-HHHHHHHHhcCcEEEeCCcccCChHHHHHHHcCCCEEeccCCcHHHHhHHHHHHhcCCCcceecCCH
Confidence 8 8999999988 7999999999999999999999999999999999999999999999999999999999995 99999
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHHHhc
Q 003891 663 DEYVQLALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRNMWHRYCK 718 (788)
Q Consensus 663 ~~y~~~a~~l~~d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~ 718 (788)
++|+++|++|++|+++|+++|+++++++.++++|| ++++.+|+.|+++|++|..
T Consensus 576 eeYv~~Av~La~D~~~l~~LR~~Lr~~~~~spLFd--~~~~~~e~~ye~~~~~w~~ 629 (631)
T 3q3e_A 576 DEYVERAVRLAENHQERLELRRYIIENNGLNTLFT--GDPRPMGQVFLEKLNAFLK 629 (631)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHSCCHHHHTC--SCCTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHhhhCCCcc--hhHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999 8899999999999999975
No 3
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=100.00 E-value=2.4e-65 Score=593.77 Aligned_cols=551 Identities=21% Similarity=0.257 Sum_probs=471.9
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 003891 146 EGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQ 225 (788)
Q Consensus 146 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~ 225 (788)
.|++++|+..|+++++.+|++..++..+|.++...|++++|++.|+++++.+|++..++.++|.++..+|++++|+++|+
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 81 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQ 81 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc---CCHHHHHHHHHHHHhhCCCC
Q 003891 226 MALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDA---GSISLAIDAYEQCLKIDPDS 302 (788)
Q Consensus 226 ~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~---g~~~eA~~~~~~al~l~p~~ 302 (788)
++++.+|++..++.++|.++...|++++|++.|+++++.+|++..++.+++.++..+ |++++|.+.|+++++.+|++
T Consensus 82 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~p~~ 161 (568)
T 2vsy_A 82 QASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGA 161 (568)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHTCCC
T ss_pred HHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcCCcc
Confidence 999999999999999999999999999999999999999999999999999999999 99999999999999999998
Q ss_pred hhhHHhHHHHhhhccCCCchHHHHHHHHHHHHH-hhhccCCCCCCCCCCCCCCeeEeeccCCcccChhHHhhhhhhcc--
Q 003891 303 RNAGQNRLLAMNYINEGHDDKLFEAHRDWGKRF-MRLYSQYTSWDNTKDPERPLVIGYVSPDYFTHSVSYFIEAPLVY-- 379 (788)
Q Consensus 303 ~~a~~~~lla~~~l~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~lriGyvS~df~~H~v~~~~~~~l~~-- 379 (788)
...+..+. ..+.+......+.|..+. .....+ ..+++..+++++||||++++|..|+++.++..+++.
T Consensus 162 ~~~~~~l~-------~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~rI~~~~~~~~~~g~~~~~~~l~~~L~ 232 (568)
T 2vsy_A 162 VEPFAFLS-------EDASAAEQLACARTRAQAIAASVRP--LAPTRVRSKGPLRVGFVSNGFGAHPTGLLTVALFEALQ 232 (568)
T ss_dssp SCHHHHTT-------SCCCHHHHHHHHHHHHHHHHTTCCC--CCCCCCCSSSCEEEEEEESCSSSSHHHHHHHHHHHHHH
T ss_pred cChHHHhC-------CCCHHHHHHHHHHHHHhccCcccCC--CCCCCCCCCCCeEEEEECcccccChHHHHHHHHHhhcc
Confidence 87654321 334444444445555433 222222 122334467899999999999999999999999999
Q ss_pred cCCCceEEEEEecccc-CChhhHHHHHHHhhhCCeEEEccCCCHHHHHHHHHhCCCcEEEeCCCCCCCCcccccccCCCC
Q 003891 380 HDYQNYKVVVYSAVVK-ADAKTIRFREKVMKKGGIWRDIYGIDEKKVAAMVREDKIDILVELTGHTANNKLGMMACQPAP 458 (788)
Q Consensus 380 ~dr~~fev~~Y~~~~~-~D~~t~~~r~~~~~~~~~~~~~~~~~~~~~a~~i~~d~idilvdl~g~t~~~~~~~~a~r~Ap 458 (788)
+++.+|||++|+.++. .+..+.+++. .. .|+.+..++..++.+.|+++++||+++..||+.++++.+++.|++|
T Consensus 233 ~~~~~~~v~~~~~~~~~~~~~~~~~~~----~~-~~~~~~~~~~~~l~~~i~~~~~Div~~~~~~~~~~~~~~~~~~~~~ 307 (568)
T 2vsy_A 233 RRQPDLQMHLFATSGDDGSTLRTRLAQ----AS-TLHDVTALGHLATAKHIRHHGIDLLFDLRGWGGGGRPEVFALRPAP 307 (568)
T ss_dssp HHCTTEEEEEEESSCCCSCHHHHHHHH----TS-EEEECTTCCHHHHHHHHHHTTCSEEEECSSCTTCSSCHHHHTCCSS
T ss_pred CCcccEEEEEEECCCCCccHHHHHHHh----cC-eEEECCCCCHHHHHHHHHhCCCCEEEECCCCCCcchHHHHhcCCCc
Confidence 9999999999998653 3555555544 23 6888888888999999999999999999999999999999999999
Q ss_pred eEEecccCCCCCCCCCccEEEecCCCCCcCccCCCccceEEcCCCccccCCCCCCC-----CCCCCCCCCCCCeEEEecC
Q 003891 459 VQVTWIGYPNTTGLPTIDYRITDSLADPPETKQKHVEELIRLPECFLCYTPSPEAG-----PVCPTPALTNGFITFGSFN 533 (788)
Q Consensus 459 vq~~~~g~~~ttg~~~~Dy~i~d~~~~p~~~~~~~~e~l~~lp~~~~~~~~~~~~~-----~~~~~~~~~~~~~~f~~~~ 533 (788)
+|++|+|||.|+|++.+||+++|.++.|.+....|.|++..+|+ +|.|.+..+ +.+...+++++.++|++.+
T Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~d~~i~~s~~~~~~~~~i~~ipn---~~~~~~~~~~~~~~~~r~~~~~~~~~~v~~~g~ 384 (568)
T 2vsy_A 308 VQVNWLAYPGTSGAPWMDYVLGDAFALPPALEPFYSEHVLRLQG---AFQPSDTSRVVAEPPSRTQCGLPEQGVVLCCFN 384 (568)
T ss_dssp EEEEESSSSSCCCCTTCCEEEECTTTSCTTTGGGCSSEEEECSS---CSCCCCTTCCCCCCCCTGGGTCCTTSCEEEECC
T ss_pred eeEeeecCCcccCCCCceEEEECCCcCCcccccCCcceeEcCCC---cCCCCCCCCCCCCCCCccccCCCCCCEEEEeCC
Confidence 99999999999999999999999999998888889999999998 455543222 2233346778888888877
Q ss_pred CCCcCCHHHHHHHHHHHhHcCCcEEEEec-CCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHHHHhcccccEeec
Q 003891 534 NLAKITPKVLQVWARILCAVPNSRLVVKC-KPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLD 612 (788)
Q Consensus 534 ~~~K~~~~~~~~~~~il~~~p~~~l~l~~-~~~~~~~~~~~l~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~~Dv~Ld 612 (788)
...|..+.++++|.+|++..|+++|+|+| .| +.++.+++.++++|++++||+|+|.++ .+++...|+.+||||+
T Consensus 385 ~~~K~~~~li~a~~~l~~~~~~~~l~i~G~~g----~~~~~l~~~~~~~~l~~~~v~~~g~~~-~~~~~~~~~~adv~v~ 459 (568)
T 2vsy_A 385 NSYKLNPQSMARMLAVLREVPDSVLWLLSGPG----EADARLRAFAHAQGVDAQRLVFMPKLP-HPQYLARYRHADLFLD 459 (568)
T ss_dssp CGGGCCHHHHHHHHHHHHHCTTCEEEEECCST----THHHHHHHHHHHTTCCGGGEEEECCCC-HHHHHHHGGGCSEEEC
T ss_pred ccccCCHHHHHHHHHHHHhCCCcEEEEecCCH----HHHHHHHHHHHHcCCChhHEEeeCCCC-HHHHHHHHhcCCEEee
Confidence 66799999999999999999999999999 55 678899999999999878999999987 6789999999999999
Q ss_pred CCCCCCchhHHHHhhhCCceeecCCCccCccchhHHHhhhCCcccccCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhc
Q 003891 613 TFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIAKNEDEYVQLALQLASDVTALANLRMSLRDLMSK 692 (788)
Q Consensus 613 ~~~~~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l~~~gl~~~ia~~~~~y~~~a~~l~~d~~~~~~~r~~~~~~~~~ 692 (788)
|+++++|+|++|||+||+|||+++|..+.++++++++..+|++|+|.+|+++|++.+.+|++|++.++.|+++.++++..
T Consensus 460 ps~~~~g~~~lEAma~G~Pvv~~~g~~~~s~~~~~~l~~~g~~e~v~~~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~ 539 (568)
T 2vsy_A 460 THPYNAHTTASDALWTGCPVLTTPGETFAARVAGSLNHHLGLDEMNVADDAAFVAKAVALASDPAALTALHARVDVLRRA 539 (568)
T ss_dssp CSSSCCSHHHHHHHHTTCCEEBCCCSSGGGSHHHHHHHHHTCGGGBCSSHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCcHHHHHHHhCCCCEEeccCCCchHHHHHHHHHHCCChhhhcCCHHHHHHHHHHHhcCHHHHHHHHHHHHHhhhc
Confidence 99998899999999999999999999999999999999999999999999999999999999999999999999988755
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHHhc
Q 003891 693 SPVCDGQNFALGLESTYRNMWHRYCK 718 (788)
Q Consensus 693 ~~~~~~~~~~~~~e~~~~~~~~~~~~ 718 (788)
...|+++.+++.++++|+++|++||+
T Consensus 540 ~~~f~~~~~~~~~~~~y~~~~~~~~~ 565 (568)
T 2vsy_A 540 SGVFHMDGFADDFGALLQALARRHGW 565 (568)
T ss_dssp SSTTCHHHHHHHHHHHHHHHHHTTTC
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 67799999999999999999999986
No 4
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=100.00 E-value=2.6e-32 Score=299.98 Aligned_cols=320 Identities=26% Similarity=0.420 Sum_probs=239.9
Q ss_pred HHHHHHHHHHcCCCChhhHHHHHHH---------------------------HHHHHHHHHHcCChHHHHHHHHHHHHhC
Q 003891 2 LVASYHKALSADPSYKPAAECLAIV---------------------------LTDLGTSLKLAGNTQDGIQKYYEALKID 54 (788)
Q Consensus 2 Ai~~~~kaL~~~P~~~~a~~~la~~---------------------------l~~lg~~~~~~g~~~~A~~~~~~al~~~ 54 (788)
|++.|+++++.+|++..++..++.+ ++.+|.++...|++++|+..|+++++.+
T Consensus 18 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 97 (388)
T 1w3b_A 18 AERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLK 97 (388)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC
Confidence 5666777777777776654333322 4445556666666666666666666666
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHH
Q 003891 55 PHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAI 134 (788)
Q Consensus 55 p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 134 (788)
|++..++..+|.++...|++++|+..|+++++.+|+...++..+|.++...|++++|++.|+++++..|++...+.
T Consensus 98 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~---- 173 (388)
T 1w3b_A 98 PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWS---- 173 (388)
T ss_dssp TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHH----
T ss_pred cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHH----
Confidence 6666666666666666666666666666666666666666666666666666666666666666666666554333
Q ss_pred HHHHhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Q 003891 135 ALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDR 214 (788)
Q Consensus 135 ~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 214 (788)
.+|.++...|++++|+..|+++++.+|++..++..+|.++...|++++|+..|++++..+|++..++.++|.++...
T Consensus 174 ---~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 250 (388)
T 1w3b_A 174 ---NLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQ 250 (388)
T ss_dssp ---HHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred ---HHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHc
Confidence 34455555678888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 003891 215 DNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQ 294 (788)
Q Consensus 215 g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~ 294 (788)
|++++|+..|+++++.+|+++.++..+|.++...|++++|++.|+++++..|+++.++..+|.++...|++++|+..|++
T Consensus 251 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 330 (388)
T 1w3b_A 251 GLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRK 330 (388)
T ss_dssp TCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 88888888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHhhCCCChhhHHhHHHHhhhccCCCchHHHHHHHH
Q 003891 295 CLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHRD 330 (788)
Q Consensus 295 al~l~p~~~~a~~~~lla~~~l~~g~~~~~~~~~~~ 330 (788)
+++++|++..++.+ ++..+...|+.+++.+.+++
T Consensus 331 al~~~p~~~~~~~~--l~~~~~~~g~~~~A~~~~~~ 364 (388)
T 1w3b_A 331 ALEVFPEFAAAHSN--LASVLQQQGKLQEALMHYKE 364 (388)
T ss_dssp HTTSCTTCHHHHHH--HHHHHHTTTCCHHHHHHHHH
T ss_pred HHhcCCCcHHHHHH--HHHHHHHcCCHHHHHHHHHH
Confidence 88888887777665 45666777888777765543
No 5
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=100.00 E-value=6.8e-32 Score=296.61 Aligned_cols=296 Identities=30% Similarity=0.417 Sum_probs=267.8
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 003891 25 IVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKN 104 (788)
Q Consensus 25 ~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~ 104 (788)
.++..+|.++...|++++|+..++++++.+|.++.+++.+|.++...|++++|+..|+++++.+|++..++..+|.++..
T Consensus 34 ~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 113 (388)
T 1w3b_A 34 GVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVA 113 (388)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCcchHHHHHHHHHHHHH
Confidence 45677888888889999999999888888888888899999999999999999999999988888888888889999999
Q ss_pred CCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChH
Q 003891 105 RGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFD 184 (788)
Q Consensus 105 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 184 (788)
.|++++|++.|+++++.+|+....+.. +|.++...|++++|++.|+++++.+|++..++..+|.++...|+++
T Consensus 114 ~g~~~~A~~~~~~al~~~p~~~~~~~~-------l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~ 186 (388)
T 1w3b_A 114 AGDMEGAVQAYVSALQYNPDLYCVRSD-------LGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIW 186 (388)
T ss_dssp HSCSSHHHHHHHHHHHHCTTCTHHHHH-------HHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHH
T ss_pred cCCHHHHHHHHHHHHHhCCCcHHHHHH-------HHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Confidence 999999999999999888887655444 4555556779999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 003891 185 MAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAA 264 (788)
Q Consensus 185 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~ 264 (788)
+|+..|+++++.+|++..++..+|.++...|++++|+..|+++++.+|++..++.++|.++...|++++|++.|+++++.
T Consensus 187 ~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 266 (388)
T 1w3b_A 187 LAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIEL 266 (388)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhhHHhHHHHhhhccCCCchHHHHHHH
Q 003891 265 NPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHR 329 (788)
Q Consensus 265 ~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~a~~~~lla~~~l~~g~~~~~~~~~~ 329 (788)
+|+++.++..+|.++...|++++|++.|+++++++|++..++.+ ++..+...|+.+++.+..+
T Consensus 267 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~--l~~~~~~~g~~~~A~~~~~ 329 (388)
T 1w3b_A 267 QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNN--LANIKREQGNIEEAVRLYR 329 (388)
T ss_dssp CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHH--HHHHHHTTTCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHH--HHHHHHHcCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999888765 5667778888887766544
No 6
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.98 E-value=1.1e-29 Score=284.32 Aligned_cols=319 Identities=17% Similarity=0.189 Sum_probs=285.9
Q ss_pred HHHHHHHHHcCCCChhhHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 003891 3 VASYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYE 82 (788)
Q Consensus 3 i~~~~kaL~~~P~~~~a~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 82 (788)
...+.+++..+|++... ++.+|..+...|++++|+..|+++++.+|++..+++.+|.++...|++++|+..|+
T Consensus 12 ~~~~~~~~~~~p~~~~~-------~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 84 (450)
T 2y4t_A 12 DLGTENLYFQSMADVEK-------HLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLT 84 (450)
T ss_dssp -----------CHHHHH-------HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cccccccccccHHHHHH-------HHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 34567788888877665 78888889999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcH---HHHHHHHHH-----HHHhhhhhhhcCCHHHHHH
Q 003891 83 KAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFE---IAKNNMAIA-----LTDLGTKVKLEGDINQGVA 154 (788)
Q Consensus 83 kal~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~la~~-----l~~lg~~~~~~g~~~~A~~ 154 (788)
++++.+|++..++..+|.+|...|++++|+..|+++++.+|++. ..+..++.. +..+|..+...|++++|+.
T Consensus 85 ~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~ 164 (450)
T 2y4t_A 85 KVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIA 164 (450)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 99999999999999999999999999999999999999999988 777666554 5677888999999999999
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 003891 155 YYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNF 234 (788)
Q Consensus 155 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~ 234 (788)
.|+++++..|.+..++..+|.+|...|++++|+..|+++++.+|.+..++..+|.++...|++++|+..|+++++..|++
T Consensus 165 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 244 (450)
T 2y4t_A 165 FLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDH 244 (450)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHH------------HHHHHHcCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 003891 235 SQSLNNL------------GVVYTVQGKMDAAAEMIEKAIAANPTYA----EAYNNLGVLYRDAGSISLAIDAYEQCLKI 298 (788)
Q Consensus 235 ~~~~~~l------------a~~~~~~g~~~eA~~~l~kal~~~p~~~----~~~~~la~~~~~~g~~~eA~~~~~~al~l 298 (788)
...+..+ |.++...|++++|+.+|+++++..|+++ ..+..+|.++...|++++|+..+++++++
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 324 (450)
T 2y4t_A 245 KRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQM 324 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 9887666 9999999999999999999999999985 47889999999999999999999999999
Q ss_pred CCCChhhHHhHHHHhhhccCCCchHHHHHHHH
Q 003891 299 DPDSRNAGQNRLLAMNYINEGHDDKLFEAHRD 330 (788)
Q Consensus 299 ~p~~~~a~~~~lla~~~l~~g~~~~~~~~~~~ 330 (788)
+|++..++.. ++..+...|+.+++....++
T Consensus 325 ~p~~~~~~~~--l~~~~~~~~~~~~A~~~~~~ 354 (450)
T 2y4t_A 325 EPDNVNALKD--RAEAYLIEEMYDEAIQDYET 354 (450)
T ss_dssp CTTCHHHHHH--HHHHHHHTTCHHHHHHHHHH
T ss_pred CcccHHHHHH--HHHHHHHhcCHHHHHHHHHH
Confidence 9999888766 56667778888877765544
No 7
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.98 E-value=2.5e-29 Score=271.23 Aligned_cols=294 Identities=14% Similarity=0.175 Sum_probs=244.0
Q ss_pred HHHHHHHHHHcCCCChhhHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 003891 2 LVASYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCY 81 (788)
Q Consensus 2 Ai~~~~kaL~~~P~~~~a~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 81 (788)
|+..|+++++.+|++..+ ++.+|.++...|++++|+..|+++++.+|++..++..+|.++...|++++|+..|
T Consensus 22 A~~~~~~~l~~~p~~~~~-------~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 94 (359)
T 3ieg_A 22 ALSQFHAAVDGDPDNYIA-------YYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDF 94 (359)
T ss_dssp HHHHHHHHHHHCTTCHHH-------HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHhhCcccHHH-------HHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHcCChHHHHHHH
Confidence 678888888888887765 6666777777888888888888888888888888888888888888888888888
Q ss_pred HHHHHhCC---CCHHHHHHH------------HHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhc
Q 003891 82 EKAALERP---MYAEAYCNM------------GVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLE 146 (788)
Q Consensus 82 ~kal~~~p---~~~~~~~~l------------a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~ 146 (788)
+++++.+| ++..++..+ |.++...|++++|+..++++++..|++...+..+ |.++...
T Consensus 95 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~ 167 (359)
T 3ieg_A 95 KKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELR-------AECFIKE 167 (359)
T ss_dssp HHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH-------HHHHHHT
T ss_pred HHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHH-------HHHHHHC
Confidence 88888888 777777666 6888888888888888888888888876554444 4444456
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHH------------HHHHHHHHc
Q 003891 147 GDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACN------------NLGVIYKDR 214 (788)
Q Consensus 147 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~------------~la~~~~~~ 214 (788)
|++++|+..++++++..|.+..++..+|.++...|++++|+..++++++..|++..++. .+|.++...
T Consensus 168 ~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 247 (359)
T 3ieg_A 168 GEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRD 247 (359)
T ss_dssp TCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 68888888888888888888888888888888888888888888888888888877554 347778888
Q ss_pred CCHHHHHHHHHHHHhhCCCCHH----HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 003891 215 DNLDKAVECYQMALSIKPNFSQ----SLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAID 290 (788)
Q Consensus 215 g~~~eA~~~~~~al~~~p~~~~----~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~~eA~~ 290 (788)
|++++|+..++++++..|++.. ++..+|.++...|++++|+..++++++.+|+++.++..+|.++...|++++|+.
T Consensus 248 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~ 327 (359)
T 3ieg_A 248 GRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQ 327 (359)
T ss_dssp TCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHH
Confidence 8888888888888888888764 456788888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHhhCCCChhhHHhH
Q 003891 291 AYEQCLKIDPDSRNAGQNR 309 (788)
Q Consensus 291 ~~~~al~l~p~~~~a~~~~ 309 (788)
+|+++++++|++..++..+
T Consensus 328 ~~~~a~~~~p~~~~~~~~l 346 (359)
T 3ieg_A 328 DYEAAQEHNENDQQIREGL 346 (359)
T ss_dssp HHHHHHTTCTTCHHHHHHH
T ss_pred HHHHHHhcCCCChHHHHHH
Confidence 8888888888888776553
No 8
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.97 E-value=8.8e-29 Score=266.91 Aligned_cols=304 Identities=17% Similarity=0.200 Sum_probs=280.3
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 003891 25 IVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKN 104 (788)
Q Consensus 25 ~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~ 104 (788)
..++.+|..+...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..++++++.+|++..++..+|.++..
T Consensus 4 ~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 83 (359)
T 3ieg_A 4 EKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLK 83 (359)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHH
Confidence 45888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhhCC---CcHHHHHHHHH-----HHHHhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 003891 105 RGDLESAIACYERCLAVSP---NFEIAKNNMAI-----ALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVA 176 (788)
Q Consensus 105 ~g~~~~A~~~~~~al~~~p---~~~~~~~~la~-----~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 176 (788)
.|++++|+..|+++++..| ++...+..++. .+..++.++...|++++|+..++++++..|.+..++..+|.+
T Consensus 84 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 163 (359)
T 3ieg_A 84 QGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAEC 163 (359)
T ss_dssp HTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred cCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 9999999999999999999 77777666543 345567888899999999999999999999999999999999
Q ss_pred HHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHH------------HHHHH
Q 003891 177 YGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLN------------NLGVV 244 (788)
Q Consensus 177 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~------------~la~~ 244 (788)
+...|++++|+..++++++..|.+..++..+|.++...|++++|+..++++++..|++...+. .+|.+
T Consensus 164 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 243 (359)
T 3ieg_A 164 FIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEE 243 (359)
T ss_dssp HHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999988654 44888
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHH----HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhhHHhHHHHhhhccCCC
Q 003891 245 YTVQGKMDAAAEMIEKAIAANPTYAE----AYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGH 320 (788)
Q Consensus 245 ~~~~g~~~eA~~~l~kal~~~p~~~~----~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~a~~~~lla~~~l~~g~ 320 (788)
+...|++++|+..++++++..|+++. ++..+|.++...|++++|+..|+++++++|++..++.. ++..+...|+
T Consensus 244 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~ 321 (359)
T 3ieg_A 244 LIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKD--RAEAYLIEEM 321 (359)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH--HHHHHHHTTC
T ss_pred HHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHH--HHHHHHHcCC
Confidence 99999999999999999999999874 46679999999999999999999999999999887665 5677788888
Q ss_pred chHHHHHHHH
Q 003891 321 DDKLFEAHRD 330 (788)
Q Consensus 321 ~~~~~~~~~~ 330 (788)
.+++.+.+++
T Consensus 322 ~~~A~~~~~~ 331 (359)
T 3ieg_A 322 YDEAIQDYEA 331 (359)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8887766554
No 9
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.97 E-value=1.1e-28 Score=276.24 Aligned_cols=295 Identities=14% Similarity=0.187 Sum_probs=273.2
Q ss_pred HHHHHHHHHHcCCCChhhHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 003891 2 LVASYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCY 81 (788)
Q Consensus 2 Ai~~~~kaL~~~P~~~~a~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 81 (788)
|+..|+++++.+|++..+ ++.+|.++...|++++|+..|+++++.+|++..++..+|.+|...|++++|+..|
T Consensus 45 A~~~~~~~l~~~p~~~~~-------~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 117 (450)
T 2y4t_A 45 ALSQFHAAVDGDPDNYIA-------YYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDF 117 (450)
T ss_dssp HHHHHHHHHHHCTTCHHH-------HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHhCCccHHH-------HHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 789999999999998766 7778888889999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCCH---HHHHHH------------HHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhc
Q 003891 82 EKAALERPMYA---EAYCNM------------GVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLE 146 (788)
Q Consensus 82 ~kal~~~p~~~---~~~~~l------------a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~ 146 (788)
+++++.+|.+. .++..+ |.++...|++++|+..|+++++..|.+...+..+ |.++...
T Consensus 118 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~ 190 (450)
T 2y4t_A 118 KKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELR-------AECFIKE 190 (450)
T ss_dssp HHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHH-------HHHHHHT
T ss_pred HHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHH-------HHHHHHC
Confidence 99999999988 776555 6679999999999999999999999987655554 4555557
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHH------------HHHHHHc
Q 003891 147 GDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNL------------GVIYKDR 214 (788)
Q Consensus 147 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l------------a~~~~~~ 214 (788)
|++++|+..|+++++.+|++..++..+|.++...|++++|+..|++++...|++...+..+ |.++...
T Consensus 191 g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (450)
T 2y4t_A 191 GEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRD 270 (450)
T ss_dssp TCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 7999999999999999999999999999999999999999999999999999998887766 9999999
Q ss_pred CCHHHHHHHHHHHHhhCCCCHH----HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 003891 215 DNLDKAVECYQMALSIKPNFSQ----SLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAID 290 (788)
Q Consensus 215 g~~~eA~~~~~~al~~~p~~~~----~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~~eA~~ 290 (788)
|++++|+.+|+++++..|+++. .+..+|.++...|++++|+..++++++.+|+++.++..+|.++...|++++|+.
T Consensus 271 g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~ 350 (450)
T 2y4t_A 271 GRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQ 350 (450)
T ss_dssp TCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHH
Confidence 9999999999999999999854 788999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhCCCChhhHHhHH
Q 003891 291 AYEQCLKIDPDSRNAGQNRL 310 (788)
Q Consensus 291 ~~~~al~l~p~~~~a~~~~l 310 (788)
.|+++++++|++..++..+.
T Consensus 351 ~~~~al~~~p~~~~~~~~l~ 370 (450)
T 2y4t_A 351 DYETAQEHNENDQQIREGLE 370 (450)
T ss_dssp HHHHHHTTSSSCHHHHHHHH
T ss_pred HHHHHHHhCcchHHHHHHHH
Confidence 99999999999988876654
No 10
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.97 E-value=3.9e-29 Score=266.73 Aligned_cols=291 Identities=17% Similarity=0.144 Sum_probs=265.6
Q ss_pred HHHHHcCCCChhhHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003891 7 HKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAAL 86 (788)
Q Consensus 7 ~kaL~~~P~~~~a~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~ 86 (788)
.+.+...|++... +..+|..++..|++++|+..|+++++.+|.+..++..++.++...|++++|+..++++++
T Consensus 12 ~~~~~~~~~~~~~-------~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 84 (330)
T 3hym_B 12 PESVDGLQENLDV-------VVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVD 84 (330)
T ss_dssp --------CCCTT-------HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHhhchhhHHH-------HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3455566666666 677788888999999999999999999999999999999999999999999999999999
Q ss_pred hCCCCHHHHHHHHHHHHHCC-CHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHhCCC
Q 003891 87 ERPMYAEAYCNMGVIYKNRG-DLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWH 165 (788)
Q Consensus 87 ~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 165 (788)
.+|.++.++..+|.++...| ++++|+.+|+++++.+|++...+..++. ++...|++++|+..++++++..|+
T Consensus 85 ~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~-------~~~~~~~~~~A~~~~~~a~~~~~~ 157 (330)
T 3hym_B 85 LYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGH-------SFAVESEHDQAMAAYFTAAQLMKG 157 (330)
T ss_dssp HCTTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHH-------HHHHHTCHHHHHHHHHHHHHHTTT
T ss_pred hCcCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHH-------HHHHccCHHHHHHHHHHHHHhccc
Confidence 99999999999999999999 9999999999999999998766555544 455567999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC---------CCCHH
Q 003891 166 YADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIK---------PNFSQ 236 (788)
Q Consensus 166 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~---------p~~~~ 236 (788)
+...+..+|.++...|++++|+..++++++.+|++..++..+|.++...|++++|+.+++++++.. |....
T Consensus 158 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 237 (330)
T 3hym_B 158 CHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEP 237 (330)
T ss_dssp CSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999986 66778
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhhHHhHHH
Q 003891 237 SLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLL 311 (788)
Q Consensus 237 ~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~a~~~~ll 311 (788)
++..+|.++...|++++|+.+++++++.+|++..++..+|.++..+|++++|+++|+++++++|++..++..+..
T Consensus 238 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 312 (330)
T 3hym_B 238 LLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGH 312 (330)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999988776443
No 11
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.97 E-value=1.1e-28 Score=268.23 Aligned_cols=290 Identities=18% Similarity=0.191 Sum_probs=259.4
Q ss_pred HHHHHHHcCCCChhhHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003891 5 SYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKA 84 (788)
Q Consensus 5 ~~~kaL~~~P~~~~a~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ka 84 (788)
.|+++++..|+++.. .+..++.+|..+...|++++|+..|+++++.+|++..+++.+|.++...|++++|+..|+++
T Consensus 48 ~~~~a~~~~~~~~~~---~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 124 (368)
T 1fch_A 48 TYDKGYQFEEENPLR---DHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRC 124 (368)
T ss_dssp HHHCCCCCCSSCTTT---TCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhhHHHhcCCCCccc---chHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 667777777776521 12236788999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHH---------HHHHHHhhhhhhhcCCHHHHHHH
Q 003891 85 ALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNM---------AIALTDLGTKVKLEGDINQGVAY 155 (788)
Q Consensus 85 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l---------a~~l~~lg~~~~~~g~~~~A~~~ 155 (788)
++.+|.+..++..+|.++...|++++|+..++++++..|++...+... ...+..++.++ ..|++++|+.+
T Consensus 125 l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~ 203 (368)
T 1fch_A 125 LELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLL-SDSLFLEVKEL 203 (368)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHH-HHHHHHHHHHH
T ss_pred HhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHh-hcccHHHHHHH
Confidence 999999999999999999999999999999999999999876544311 11112344444 67899999999
Q ss_pred HHHHHHhCCC--CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 003891 156 YKKALYYNWH--YADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPN 233 (788)
Q Consensus 156 ~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~ 233 (788)
++++++.+|. ...++..+|.++...|++++|+..|+++++.+|++..++..+|.++...|++++|+.+|+++++.+|+
T Consensus 204 ~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 283 (368)
T 1fch_A 204 FLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPG 283 (368)
T ss_dssp HHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 9999999999 89999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 003891 234 FSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTY-----------AEAYNNLGVLYRDAGSISLAIDAYEQCLKI 298 (788)
Q Consensus 234 ~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~-----------~~~~~~la~~~~~~g~~~eA~~~~~~al~l 298 (788)
+..++..+|.++...|++++|+.+|++++++.|++ ..++..+|.++..+|++++|...++++++.
T Consensus 284 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 359 (368)
T 1fch_A 284 YIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDLST 359 (368)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCHHH
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHHHHH
Confidence 99999999999999999999999999999998887 899999999999999999999998887764
No 12
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.97 E-value=2.8e-27 Score=275.01 Aligned_cols=275 Identities=18% Similarity=0.197 Sum_probs=191.6
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC
Q 003891 27 LTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRG 106 (788)
Q Consensus 27 l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g 106 (788)
+..+|..+...|++++|+..|+++++.+|++..++..++.++...|++++|+..++++++..|.+..++..+|.+|...|
T Consensus 308 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 387 (597)
T 2xpi_A 308 LLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVN 387 (597)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhc
Confidence 45566666677777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred CHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHH
Q 003891 107 DLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMA 186 (788)
Q Consensus 107 ~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A 186 (788)
++++|+++|++++++.|++...+..++ ..+...|++++|++.|+++++..|++..++..++.+|...|++++|
T Consensus 388 ~~~~A~~~~~~~~~~~~~~~~~~~~l~-------~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 460 (597)
T 2xpi_A 388 KISEARRYFSKSSTMDPQFGPAWIGFA-------HSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLA 460 (597)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHH-------HHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHH
T ss_pred cHHHHHHHHHHHHHhCCCCHHHHHHHH-------HHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHH
Confidence 777777777777777776654444333 3333455777777777777777777777777777777777777777
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh------CCCC-HHHHHHHHHHHHHcCCHHHHHHHHH
Q 003891 187 IVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSI------KPNF-SQSLNNLGVVYTVQGKMDAAAEMIE 259 (788)
Q Consensus 187 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~------~p~~-~~~~~~la~~~~~~g~~~eA~~~l~ 259 (788)
++.|+++++..|.+..++..+|.++.+.|++++|+++|+++++. +|+. ..++..+|.++...|++++|++.++
T Consensus 461 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 540 (597)
T 2xpi_A 461 NEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALN 540 (597)
T ss_dssp HHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 77777777777777777777777777777777777777777666 4443 5667777777777777777777777
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhhHHh
Q 003891 260 KAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQN 308 (788)
Q Consensus 260 kal~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~a~~~ 308 (788)
++++.+|+++.++..++.+|...|++++|.++|+++++++|++..++..
T Consensus 541 ~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~ 589 (597)
T 2xpi_A 541 QGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDL 589 (597)
T ss_dssp HHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHH
Confidence 7777777777777777777777777777777777777777776665543
No 13
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.97 E-value=6.9e-29 Score=270.07 Aligned_cols=272 Identities=21% Similarity=0.193 Sum_probs=244.1
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC
Q 003891 26 VLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNR 105 (788)
Q Consensus 26 ~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~ 105 (788)
.++.+|..+...|++++|+..|+++++.+|++..+++.+|.++...|++++|+..|+++++.+|++..++..+|.+|...
T Consensus 67 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 146 (365)
T 4eqf_A 67 GAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNT 146 (365)
T ss_dssp THHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHcc
Confidence 37788889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhhCCCcHHHHHHH---HHHHHHhhhhhhhcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHc
Q 003891 106 GDLESAIACYERCLAVSPNFEIAKNNM---AIALTDLGTKVKLEGDINQGVAYYKKALYYNWH--YADAMYNLGVAYGEM 180 (788)
Q Consensus 106 g~~~~A~~~~~~al~~~p~~~~~~~~l---a~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~ 180 (788)
|++++|+.+|++++++.|++...+..+ +.++..+|.++...|++++|+.+|+++++.+|+ ++.++..+|.++...
T Consensus 147 g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~ 226 (365)
T 4eqf_A 147 SHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLS 226 (365)
T ss_dssp TCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHC
Confidence 999999999999999998876655544 556667788889999999999999999999999 899999999999999
Q ss_pred CChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 003891 181 LKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEK 260 (788)
Q Consensus 181 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~k 260 (788)
|++++|+..|+++++.+|++..++.++|.++...|++++|+.+|+++++.+|++..++.++|.+|...|++++|+.+|++
T Consensus 227 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 306 (365)
T 4eqf_A 227 GEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLT 306 (365)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCC------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 003891 261 AIAANPT------------YAEAYNNLGVLYRDAGSISLAIDAYEQCLK 297 (788)
Q Consensus 261 al~~~p~------------~~~~~~~la~~~~~~g~~~eA~~~~~~al~ 297 (788)
++++.|+ +..+|..++.++..+|+.+.+....++.+.
T Consensus 307 al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~l~ 355 (365)
T 4eqf_A 307 ALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLGDLD 355 (365)
T ss_dssp HHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTTCCG
T ss_pred HHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHhhHH
Confidence 9999876 357899999999999999999887776544
No 14
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.96 E-value=1.1e-27 Score=272.49 Aligned_cols=321 Identities=14% Similarity=0.116 Sum_probs=289.7
Q ss_pred HHHHHHHHHHcCCCChhhHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 003891 2 LVASYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCY 81 (788)
Q Consensus 2 Ai~~~~kaL~~~P~~~~a~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 81 (788)
|++.|+++++.+|+ ..+ +..+|.++...|++++|+..|+++++.+|++..+++.+|.++...|++++|+..|
T Consensus 25 A~~~~~~al~~~p~-~~~-------~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 96 (514)
T 2gw1_A 25 AIKYYNWALELKED-PVF-------YSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEGLGKFADAMFDL 96 (514)
T ss_dssp HHHHHHHHHHHCCC-HHH-------HHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHhcCcc-HHH-------HHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 78999999999984 443 7778888889999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCC-----------------------------------------------------------------------
Q 003891 82 EKAALERPM----------------------------------------------------------------------- 90 (788)
Q Consensus 82 ~kal~~~p~----------------------------------------------------------------------- 90 (788)
+++++..|.
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (514)
T 2gw1_A 97 SVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELT 176 (514)
T ss_dssp HHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHHHHTTSCCCCC
T ss_pred HHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHHH
Confidence 999887763
Q ss_pred --------CHHHHHHHHHHHHH---CCCHHHHHHHHHHHHh-----h--CCCcHHHHHHHHHHHHHhhhhhhhcCCHHHH
Q 003891 91 --------YAEAYCNMGVIYKN---RGDLESAIACYERCLA-----V--SPNFEIAKNNMAIALTDLGTKVKLEGDINQG 152 (788)
Q Consensus 91 --------~~~~~~~la~~~~~---~g~~~~A~~~~~~al~-----~--~p~~~~~~~~la~~l~~lg~~~~~~g~~~~A 152 (788)
+...+..+|.++.. .|++++|+..|+++++ + .|++.........++..+|.++...|++++|
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A 256 (514)
T 2gw1_A 177 FANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGA 256 (514)
T ss_dssp CSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHH
T ss_pred HHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHH
Confidence 26677888888876 8999999999999999 6 7777655556677888899999999999999
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 003891 153 VAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKP 232 (788)
Q Consensus 153 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p 232 (788)
+.+++++++.+|. ..++..+|.++...|++++|+..++++++.+|.+..++..+|.++...|++++|+..|+++++..|
T Consensus 257 ~~~~~~~l~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 335 (514)
T 2gw1_A 257 HEDIKKAIELFPR-VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDP 335 (514)
T ss_dssp HHHHHHHHHHCCC-HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCS
T ss_pred HHHHHHHHhhCcc-HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCh
Confidence 9999999999999 999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChh----hHHh
Q 003891 233 NFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRN----AGQN 308 (788)
Q Consensus 233 ~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~----a~~~ 308 (788)
.+..++..+|.++...|++++|+..++++++..|+++.++..+|.++...|++++|+.+|++++++.|++.. +...
T Consensus 336 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 415 (514)
T 2gw1_A 336 ENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPL 415 (514)
T ss_dssp SCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999998866 2233
Q ss_pred HHHHhhhcc---CCCchHHHHHHHHH
Q 003891 309 RLLAMNYIN---EGHDDKLFEAHRDW 331 (788)
Q Consensus 309 ~lla~~~l~---~g~~~~~~~~~~~~ 331 (788)
..++..+.. .|+.+++....+..
T Consensus 416 ~~l~~~~~~~~~~~~~~~A~~~~~~a 441 (514)
T 2gw1_A 416 VGKATLLTRNPTVENFIEATNLLEKA 441 (514)
T ss_dssp HHHHHHHHTSCCTTHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhhcCCHHHHHHHHHHH
Confidence 446777777 78877777655543
No 15
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.96 E-value=7.2e-28 Score=275.84 Aligned_cols=288 Identities=18% Similarity=0.231 Sum_probs=267.2
Q ss_pred HHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 003891 20 AECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMG 99 (788)
Q Consensus 20 ~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~la 99 (788)
....+..++.+|..++..|++++|+..|+++++.+|+++.+++.+|.++..+|++++|+..|+++++.+|++..++..+|
T Consensus 21 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 100 (537)
T 3fp2_A 21 RQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRA 100 (537)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHH
Confidence 34567889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHCCCHHHHHHHH----------------------------------------------------------------
Q 003891 100 VIYKNRGDLESAIACY---------------------------------------------------------------- 115 (788)
Q Consensus 100 ~~~~~~g~~~~A~~~~---------------------------------------------------------------- 115 (788)
.++...|++++|+..|
T Consensus 101 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (537)
T 3fp2_A 101 SANESLGNFTDAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEV 180 (537)
T ss_dssp HHHHHHTCHHHHHHHHHHHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHH
Confidence 9999999888887655
Q ss_pred ---------------------------------------------HHHHhhCCCcHHHHHHHHHHHHHhhhhhhhcCCHH
Q 003891 116 ---------------------------------------------ERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDIN 150 (788)
Q Consensus 116 ---------------------------------------------~~al~~~p~~~~~~~~la~~l~~lg~~~~~~g~~~ 150 (788)
+++++.+|++...+..++.++..+|.++...|+++
T Consensus 181 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~ 260 (537)
T 3fp2_A 181 SSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLL 260 (537)
T ss_dssp HTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHH
Confidence 33444566666666677888999999999999999
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 003891 151 QGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSI 230 (788)
Q Consensus 151 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~ 230 (788)
+|+..++++++.+|+ ..++..+|.++...|++++|+..++++++.+|++..++..+|.++...|++++|+..|+++++.
T Consensus 261 ~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 339 (537)
T 3fp2_A 261 DAQVLLQESINLHPT-PNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSL 339 (537)
T ss_dssp HHHHHHHHHHHHCCC-HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCC-chHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 999999999999999 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhhHHh
Q 003891 231 KPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQN 308 (788)
Q Consensus 231 ~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~a~~~ 308 (788)
+|++..++..+|.++...|++++|+..++++++.+|+++.++..+|.++...|++++|+..|++++++.|++...+..
T Consensus 340 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 417 (537)
T 3fp2_A 340 NPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVG 417 (537)
T ss_dssp CTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSST
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999887665443
No 16
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.96 E-value=1.4e-27 Score=273.32 Aligned_cols=314 Identities=16% Similarity=0.183 Sum_probs=278.9
Q ss_pred HHHHHHHHHHcCCCChhhHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 003891 2 LVASYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCY 81 (788)
Q Consensus 2 Ai~~~~kaL~~~P~~~~a~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 81 (788)
|++.|+++++.+|++..+ +..+|.++...|++++|+..|+++++.+|++..+++.+|.++...|++++|+..|
T Consensus 44 A~~~~~~al~~~p~~~~~-------~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 116 (537)
T 3fp2_A 44 AIKYYQYAIELDPNEPVF-------YSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFDL 116 (537)
T ss_dssp CHHHHHHHHHHCTTCHHH-------HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHhhCCCCcHH-------HHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 789999999999999876 7777888888899999999999999999999999999999999999988887755
Q ss_pred H-------------------------------------------------------------------------------
Q 003891 82 E------------------------------------------------------------------------------- 82 (788)
Q Consensus 82 ~------------------------------------------------------------------------------- 82 (788)
+
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (537)
T 3fp2_A 117 SVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALL 196 (537)
T ss_dssp HHHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHH
T ss_pred HHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhccccccHHHHH
Confidence 2
Q ss_pred ------------------------------HHHHhCCCCHH-------HHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCc
Q 003891 83 ------------------------------KAALERPMYAE-------AYCNMGVIYKNRGDLESAIACYERCLAVSPNF 125 (788)
Q Consensus 83 ------------------------------kal~~~p~~~~-------~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 125 (788)
++++.+|++.. ++..+|.++...|++++|+..|+++++.+|+
T Consensus 197 ~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~- 275 (537)
T 3fp2_A 197 SDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPT- 275 (537)
T ss_dssp HHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCC-
Confidence 23344566533 5788899999999999999999999999998
Q ss_pred HHHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHH
Q 003891 126 EIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACN 205 (788)
Q Consensus 126 ~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 205 (788)
.. ++..+|.++...|++++|+.+++++++.+|++..++..+|.++...|++++|+..++++++.+|++..++.
T Consensus 276 ~~-------~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~ 348 (537)
T 3fp2_A 276 PN-------SYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYI 348 (537)
T ss_dssp HH-------HHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHH
T ss_pred ch-------HHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 43 34556777777899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHH
Q 003891 206 NLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYA------EAYNNLGVLY 279 (788)
Q Consensus 206 ~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~------~~~~~la~~~ 279 (788)
.+|.++...|++++|+.+++++++..|++..++..+|.++...|++++|+..|+++++..|++. ..+..+|.++
T Consensus 349 ~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~ 428 (537)
T 3fp2_A 349 QLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATIL 428 (537)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999876553 3466778999
Q ss_pred HHc----------CCHHHHHHHHHHHHhhCCCChhhHHhHHHHhhhccCCCchHHHHHHHHHH
Q 003891 280 RDA----------GSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHRDWG 332 (788)
Q Consensus 280 ~~~----------g~~~eA~~~~~~al~l~p~~~~a~~~~lla~~~l~~g~~~~~~~~~~~~~ 332 (788)
... |++++|+.+|+++++++|++..++.+ ++..|...|+.+++.+.+++..
T Consensus 429 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~--l~~~~~~~g~~~~A~~~~~~al 489 (537)
T 3fp2_A 429 ARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIG--LAQLKLQMEKIDEAIELFEDSA 489 (537)
T ss_dssp HHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHH--HHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHH--HHHHHHHhccHHHHHHHHHHHH
Confidence 999 99999999999999999999887655 6777888899888777655433
No 17
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.96 E-value=3.3e-27 Score=251.76 Aligned_cols=271 Identities=15% Similarity=0.169 Sum_probs=251.3
Q ss_pred HHHHHHHHHHcCCCChhhHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-CHHHHHHH
Q 003891 2 LVASYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELM-QYDTALGC 80 (788)
Q Consensus 2 Ai~~~~kaL~~~P~~~~a~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g-~~~~A~~~ 80 (788)
|++.|+++++.+|.+... +..++.++...|++++|+..++++++.+|+++.+++.+|.++...| ++++|+.+
T Consensus 41 A~~~~~~~l~~~p~~~~~-------~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~ 113 (330)
T 3hym_B 41 CYKLTSVVMEKDPFHASC-------LPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRY 113 (330)
T ss_dssp HHHHHHHHHHHCTTCTTT-------HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHHHSCSCHHHHHHH
T ss_pred HHHHHHHHHHcCCCChhh-------HHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 789999999999999887 4555666778899999999999999999999999999999999999 99999999
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHH
Q 003891 81 YEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKAL 160 (788)
Q Consensus 81 ~~kal~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al 160 (788)
|+++++.+|.+..++..+|.++...|++++|+..++++++..|++...+.. +|.++...|++++|+.++++++
T Consensus 114 ~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~-------l~~~~~~~~~~~~A~~~~~~al 186 (330)
T 3hym_B 114 LSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLY-------IGLEYGLTNNSKLAERFFSQAL 186 (330)
T ss_dssp HHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHH-------HHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHH-------HHHHHHHHhhHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999997655544 4555556779999999999999
Q ss_pred HhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC---------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 003891 161 YYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFN---------PHCAEACNNLGVIYKDRDNLDKAVECYQMALSIK 231 (788)
Q Consensus 161 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~---------p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~ 231 (788)
+.+|++..++..+|.++...|++++|+..++++++.. |....++..+|.++...|++++|+.+|+++++.+
T Consensus 187 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 266 (330)
T 3hym_B 187 SIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLI 266 (330)
T ss_dssp TTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HhCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhC
Confidence 9999999999999999999999999999999999985 6668899999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-HHcCCHH
Q 003891 232 PNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLY-RDAGSIS 286 (788)
Q Consensus 232 p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~-~~~g~~~ 286 (788)
|++..++..+|.++...|++++|+++++++++++|+++.++..++.++ ...|+.+
T Consensus 267 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 267 PQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC--
T ss_pred ccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhCchh
Confidence 999999999999999999999999999999999999999999999998 5566643
No 18
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.96 E-value=6.4e-28 Score=262.14 Aligned_cols=294 Identities=21% Similarity=0.268 Sum_probs=252.2
Q ss_pred HHHHHcCChHHHHH-HHHHHHHhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC
Q 003891 32 TSLKLAGNTQDGIQ-KYYEALKIDPHY----APAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRG 106 (788)
Q Consensus 32 ~~~~~~g~~~~A~~-~~~~al~~~p~~----~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g 106 (788)
.++...|++++|+. .|+++++..|++ ...++.+|.++...|++++|+..|+++++.+|.+..++..+|.++...|
T Consensus 33 ~~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g 112 (368)
T 1fch_A 33 EAHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENE 112 (368)
T ss_dssp -------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTT
T ss_pred hhhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCc
Confidence 35667799999999 999999988876 4569999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHH---------------
Q 003891 107 DLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMY--------------- 171 (788)
Q Consensus 107 ~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~--------------- 171 (788)
++++|+..|+++++++|++...+..+ |.++...|++++|+..++++++..|++...+.
T Consensus 113 ~~~~A~~~~~~al~~~~~~~~~~~~l-------~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (368)
T 1fch_A 113 QELLAISALRRCLELKPDNQTALMAL-------AVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSK 185 (368)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHH-------HHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------
T ss_pred CHHHHHHHHHHHHhcCCCCHHHHHHH-------HHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHH
Confidence 99999999999999999987655554 45555577999999999999999998876654
Q ss_pred -HHHHHHHHcCChHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Q 003891 172 -NLGVAYGEMLKFDMAIVFYELAFHFNPH--CAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQ 248 (788)
Q Consensus 172 -~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~ 248 (788)
.++.++ ..|++++|+..++++++.+|. +..++..+|.++...|++++|+.+|+++++.+|+++.++..+|.++...
T Consensus 186 ~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~ 264 (368)
T 1fch_A 186 RILGSLL-SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANG 264 (368)
T ss_dssp CTTHHHH-HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHh-hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHc
Confidence 466666 999999999999999999999 8999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-----------hhhHHhHHHHhhhcc
Q 003891 249 GKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDS-----------RNAGQNRLLAMNYIN 317 (788)
Q Consensus 249 g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~-----------~~a~~~~lla~~~l~ 317 (788)
|++++|+..|+++++++|++..++..+|.+|..+|++++|+.+|++++++.|++ ..++.+ ++..+..
T Consensus 265 g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~--l~~~~~~ 342 (368)
T 1fch_A 265 NQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWST--LRLALSM 342 (368)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHH--HHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHH--HHHHHHH
Confidence 999999999999999999999999999999999999999999999999999988 555544 5666777
Q ss_pred CCCchHHHHHHHHHHHHH
Q 003891 318 EGHDDKLFEAHRDWGKRF 335 (788)
Q Consensus 318 ~g~~~~~~~~~~~~~~~~ 335 (788)
.|+.+++....++-...+
T Consensus 343 ~g~~~~A~~~~~~~l~~~ 360 (368)
T 1fch_A 343 LGQSDAYGAADARDLSTL 360 (368)
T ss_dssp HTCGGGHHHHHTTCHHHH
T ss_pred hCChHhHHHhHHHHHHHH
Confidence 788777766554433333
No 19
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.96 E-value=2.8e-27 Score=251.96 Aligned_cols=277 Identities=19% Similarity=0.207 Sum_probs=253.5
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC
Q 003891 26 VLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNR 105 (788)
Q Consensus 26 ~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~ 105 (788)
.++.+|..+...|++++|+..|+++++.+|++..++..+|.++...|++++|+..++++++.+|.+..++..+|.++...
T Consensus 23 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~ 102 (327)
T 3cv0_A 23 NPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 102 (327)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHc
Confidence 37788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhhCCCcHHHHHHHH------HHHHHh-hh-hhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 003891 106 GDLESAIACYERCLAVSPNFEIAKNNMA------IALTDL-GT-KVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAY 177 (788)
Q Consensus 106 g~~~~A~~~~~~al~~~p~~~~~~~~la------~~l~~l-g~-~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 177 (788)
|++++|+..++++++..|++...+..+. .....+ +. ++...|++++|+.+++++++..|.+..++..+|.++
T Consensus 103 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 182 (327)
T 3cv0_A 103 HNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLY 182 (327)
T ss_dssp TCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Confidence 9999999999999999998765443331 111122 33 477788999999999999999999999999999999
Q ss_pred HHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 003891 178 GEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEM 257 (788)
Q Consensus 178 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~ 257 (788)
...|++++|+..++++++.+|++..++..+|.++...|++++|+.+|+++++..|++..++..+|.++...|++++|++.
T Consensus 183 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 262 (327)
T 3cv0_A 183 NLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQ 262 (327)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCC------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 003891 258 IEKAIAANPT------------YAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDS 302 (788)
Q Consensus 258 l~kal~~~p~------------~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~ 302 (788)
++++++..|+ +..++..++.++..+|++++|...++++++..|+.
T Consensus 263 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~ 319 (327)
T 3cv0_A 263 LVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVEPFAKE 319 (327)
T ss_dssp HHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSHHHHHH
T ss_pred HHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcchh
Confidence 9999999999 79999999999999999999999999988876653
No 20
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.96 E-value=4.1e-27 Score=267.61 Aligned_cols=313 Identities=17% Similarity=0.134 Sum_probs=274.6
Q ss_pred HHHHHHHHHHcCCCChhhHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC------------------------
Q 003891 2 LVASYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHY------------------------ 57 (788)
Q Consensus 2 Ai~~~~kaL~~~P~~~~a~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~------------------------ 57 (788)
|++.|+++++.+|++..+ ++.+|.++...|++++|+..|+++++..|.+
T Consensus 58 A~~~~~~al~~~p~~~~~-------~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 130 (514)
T 2gw1_A 58 VVEMSTKALELKPDYSKV-------LLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKF 130 (514)
T ss_dssp HHHHHHHHHHHCSCCHHH-------HHHHHHHHHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHhccChHHHHH-------HHHHHHHHHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHH
Confidence 789999999999999877 6777888888999999999999998887632
Q ss_pred -------------------------------------------------------HHHHHHHHHHHHH---cCCHHHHHH
Q 003891 58 -------------------------------------------------------APAYYNLGVVYSE---LMQYDTALG 79 (788)
Q Consensus 58 -------------------------------------------------------~~~~~~lg~~~~~---~g~~~~A~~ 79 (788)
...++.+|.+++. .|++++|+.
T Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~ 210 (514)
T 2gw1_A 131 GDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADE 210 (514)
T ss_dssp --------------------------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHH
T ss_pred HHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHH
Confidence 6677888888776 899999999
Q ss_pred HHHHHHH-----h--C-------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhh
Q 003891 80 CYEKAAL-----E--R-------PMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKL 145 (788)
Q Consensus 80 ~~~kal~-----~--~-------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~ 145 (788)
.|+++++ . + |....++..+|.++...|++++|+..++++++..|+ ...+ ..+|.++..
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~-------~~l~~~~~~ 282 (514)
T 2gw1_A 211 SFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR-VNSY-------IYMALIMAD 282 (514)
T ss_dssp HHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC-HHHH-------HHHHHHHHT
T ss_pred HHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc-HHHH-------HHHHHHHHH
Confidence 9999998 5 3 445678999999999999999999999999999998 5444 445555666
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 003891 146 EGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQ 225 (788)
Q Consensus 146 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~ 225 (788)
.|++++|+..++++++.+|.+..++..+|.++...|++++|+..++++++..|.+..++..+|.++...|++++|+.+++
T Consensus 283 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 362 (514)
T 2gw1_A 283 RNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFS 362 (514)
T ss_dssp SSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 77999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH------HHHHHHHHHHH---cCCHHHHHHHHHHHH
Q 003891 226 MALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAE------AYNNLGVLYRD---AGSISLAIDAYEQCL 296 (788)
Q Consensus 226 ~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~------~~~~la~~~~~---~g~~~eA~~~~~~al 296 (788)
++++..|++..++..+|.++...|++++|+.+++++++..|++.. ++..+|.++.. .|++++|+..|++++
T Consensus 363 ~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~ 442 (514)
T 2gw1_A 363 EAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKAS 442 (514)
T ss_dssp HHHHHSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHH
T ss_pred HHHHHcccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999888754 89999999999 999999999999999
Q ss_pred hhCCCChhhHHhHHHHhhhccCCCchHHHHHHHHH
Q 003891 297 KIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHRDW 331 (788)
Q Consensus 297 ~l~p~~~~a~~~~lla~~~l~~g~~~~~~~~~~~~ 331 (788)
+++|++..++.. ++..|...|+.+++.+.+++.
T Consensus 443 ~~~~~~~~~~~~--la~~~~~~g~~~~A~~~~~~a 475 (514)
T 2gw1_A 443 KLDPRSEQAKIG--LAQMKLQQEDIDEAITLFEES 475 (514)
T ss_dssp HHCTTCHHHHHH--HHHHHHHTTCHHHHHHHHHHH
T ss_pred HhCcccHHHHHH--HHHHHHHhcCHHHHHHHHHHH
Confidence 999998877654 677778888888877665543
No 21
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.95 E-value=9.6e-26 Score=262.00 Aligned_cols=300 Identities=19% Similarity=0.144 Sum_probs=249.3
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHH-------------------------------------------
Q 003891 24 AIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPA------------------------------------------- 60 (788)
Q Consensus 24 a~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~------------------------------------------- 60 (788)
+.+++.+|..+...|++++|++.|+++++.+|++..+
T Consensus 200 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 279 (597)
T 2xpi_A 200 ASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKL 279 (597)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHH
Confidence 5568899999999999999999999999988876554
Q ss_pred ----------------------------HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHH
Q 003891 61 ----------------------------YYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAI 112 (788)
Q Consensus 61 ----------------------------~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g~~~~A~ 112 (788)
+..++.+|...|++++|+..|+++++.+|.+..++..++.++...|++++|+
T Consensus 280 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 359 (597)
T 2xpi_A 280 NKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLY 359 (597)
T ss_dssp CTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHH
T ss_pred HHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHH
Confidence 4445555556666666666666666666666666666666666666666666
Q ss_pred HHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Q 003891 113 ACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYEL 192 (788)
Q Consensus 113 ~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 192 (788)
..++++++..|++... +..++..+...|++++|+++|+++++.+|.+..++..++.+|...|++++|++.|++
T Consensus 360 ~~~~~~~~~~~~~~~~-------~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 432 (597)
T 2xpi_A 360 LISNDLVDRHPEKAVT-------WLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTT 432 (597)
T ss_dssp HHHHHHHHHCTTSHHH-------HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHhhCcccHHH-------HHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 6666666666665443 344556666778999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CC
Q 003891 193 AFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAA------NP 266 (788)
Q Consensus 193 al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~------~p 266 (788)
+++..|++..++..+|.+|...|++++|+++|+++++..|.++.++..+|.++...|++++|++.|+++++. +|
T Consensus 433 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p 512 (597)
T 2xpi_A 433 AARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNE 512 (597)
T ss_dssp HHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCS
T ss_pred HHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccch
Confidence 999999999999999999999999999999999999999999999999999999999999999999999998 56
Q ss_pred CC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhhHHhHHHHhhhccCCCchHHHHHHHHHH
Q 003891 267 TY-AEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHRDWG 332 (788)
Q Consensus 267 ~~-~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~a~~~~lla~~~l~~g~~~~~~~~~~~~~ 332 (788)
+. ..++..+|.+|...|++++|++.|+++++++|++..++.. ++..|...|+.+++.+..++..
T Consensus 513 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~--l~~~~~~~g~~~~A~~~~~~~l 577 (597)
T 2xpi_A 513 KPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTA--IALVYLHKKIPGLAITHLHESL 577 (597)
T ss_dssp GGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHH--HHHHHHHTTCHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHH--HHHHHHHhCCHHHHHHHHHHHH
Confidence 64 7899999999999999999999999999999998877655 5677788888888776655433
No 22
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.95 E-value=5.3e-27 Score=255.15 Aligned_cols=252 Identities=19% Similarity=0.257 Sum_probs=220.5
Q ss_pred HHHHHHHHhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Q 003891 45 QKYYEALKIDPHY----APAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLA 120 (788)
Q Consensus 45 ~~~~~al~~~p~~----~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 120 (788)
..+.+.+...+.+ ...++.+|..+...|++++|+..|+++++.+|++..++..+|.++...|++++|+..|+++++
T Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 127 (365)
T 4eqf_A 48 SASEKGYYFHTENPFKDWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLE 127 (365)
T ss_dssp -----CCCCCSSCTTTTCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhhhcccCCcccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 4445544444444 445999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCcHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHH----------HHHHHHHcCChHHHHHHH
Q 003891 121 VSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYN----------LGVAYGEMLKFDMAIVFY 190 (788)
Q Consensus 121 ~~p~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~----------la~~~~~~g~~~~A~~~~ 190 (788)
++|++...+..+ |.++...|++++|+.+|+++++..|++...+.. +|.++...|++++|+..|
T Consensus 128 ~~p~~~~~~~~l-------~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 200 (365)
T 4eqf_A 128 LQPNNLKALMAL-------AVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELY 200 (365)
T ss_dssp HCTTCHHHHHHH-------HHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHH
T ss_pred cCCCCHHHHHHH-------HHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHH
Confidence 999987655554 555555779999999999999999876665554 499999999999999999
Q ss_pred HHHHhcCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 003891 191 ELAFHFNPH--CAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTY 268 (788)
Q Consensus 191 ~~al~~~p~--~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~ 268 (788)
+++++.+|. ++.++..+|.++...|++++|+.+|+++++..|+++.++..+|.++...|++++|+..|+++++++|++
T Consensus 201 ~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 280 (365)
T 4eqf_A 201 LEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGF 280 (365)
T ss_dssp HHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc
Confidence 999999999 899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCh
Q 003891 269 AEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSR 303 (788)
Q Consensus 269 ~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~ 303 (788)
+.++..+|.+|..+|++++|+.+|+++++++|++.
T Consensus 281 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 315 (365)
T 4eqf_A 281 IRSRYNLGISCINLGAYREAVSNFLTALSLQRKSR 315 (365)
T ss_dssp HHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC-
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccC
Confidence 99999999999999999999999999999998853
No 23
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.95 E-value=9.7e-27 Score=253.73 Aligned_cols=247 Identities=12% Similarity=0.075 Sum_probs=149.9
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 003891 26 VLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQ-YDTALGCYEKAALERPMYAEAYCNMGVIYKN 104 (788)
Q Consensus 26 ~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~-~~~A~~~~~kal~~~p~~~~~~~~la~~~~~ 104 (788)
++..+|.++...|++++|+..|+++++++|++..+|+++|.++..+|+ +++|+.+|+++++++|++..+|+++|.++..
T Consensus 99 a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~ 178 (382)
T 2h6f_A 99 VYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEW 178 (382)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 355556666666666666666666666666666666666666666665 6666666666666666666666666666666
Q ss_pred CCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCCh
Q 003891 105 RGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGE-MLKF 183 (788)
Q Consensus 105 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~g~~ 183 (788)
+|++++|+..|+++++++|++..++.+++.++..+ |++++|+.+|+++++++|++..+|+++|.++.. .|..
T Consensus 179 ~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~-------g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l~~~~ 251 (382)
T 2h6f_A 179 LRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEF-------KLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYN 251 (382)
T ss_dssp HTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHH-------TCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSC
T ss_pred ccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHc-------CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcc
Confidence 66666666666666666666655555444444443 356666666666666666666666666666666 3333
Q ss_pred HHH-----HHHHHHHHhcCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC-------
Q 003891 184 DMA-----IVFYELAFHFNPHCAEACNNLGVIYKDRD--NLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQG------- 249 (788)
Q Consensus 184 ~~A-----~~~~~~al~~~p~~~~~~~~la~~~~~~g--~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g------- 249 (788)
++| +.+|++++.++|++..+|++++.++...| ++++|++.++++ +.+|++..++..+|.+|..+|
T Consensus 252 ~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~ 330 (382)
T 2h6f_A 252 DRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNK 330 (382)
T ss_dssp SHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSH
T ss_pred hHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccch
Confidence 555 35555566666655556655555555555 455555555555 555555555555555555542
Q ss_pred --CHHHHHHHHHHH-HHhCCCCHHHHHHHHHHHH
Q 003891 250 --KMDAAAEMIEKA-IAANPTYAEAYNNLGVLYR 280 (788)
Q Consensus 250 --~~~eA~~~l~ka-l~~~p~~~~~~~~la~~~~ 280 (788)
.+++|+++|+++ ++++|.....|..++..+.
T Consensus 331 ~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~ 364 (382)
T 2h6f_A 331 EDILNKALELCEILAKEKDTIRKEYWRYIGRSLQ 364 (382)
T ss_dssp HHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHH
Confidence 135555555555 5555555555555555444
No 24
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.95 E-value=1e-26 Score=253.59 Aligned_cols=253 Identities=11% Similarity=0.046 Sum_probs=234.8
Q ss_pred HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC-HHHHHHHHHHHHhhCCCcHHHH
Q 003891 51 LKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGD-LESAIACYERCLAVSPNFEIAK 129 (788)
Q Consensus 51 l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~ 129 (788)
+..+|++..++..+|.++...|++++|+..|+++++++|++..+|+++|.++..+|+ +++|+..|+++++++|++..++
T Consensus 90 i~~~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~ 169 (382)
T 2h6f_A 90 IIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVW 169 (382)
T ss_dssp ECCCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred hhCChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHH
Confidence 455777889999999999999999999999999999999999999999999999997 9999999999999999998877
Q ss_pred HHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 003891 130 NNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGV 209 (788)
Q Consensus 130 ~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 209 (788)
.+++.++.. .|++++|+..|+++++++|++..+|+++|.++..+|++++|+..|+++++++|++..+|+++|.
T Consensus 170 ~~~g~~~~~-------~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~ 242 (382)
T 2h6f_A 170 HHRRVLVEW-------LRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYF 242 (382)
T ss_dssp HHHHHHHHH-------HTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHH-------ccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 777666666 4599999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHH-cCCHHHH-----HHHHHHHHhhCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 003891 210 IYKD-RDNLDKA-----VECYQMALSIKPNFSQSLNNLGVVYTVQG--KMDAAAEMIEKAIAANPTYAEAYNNLGVLYRD 281 (788)
Q Consensus 210 ~~~~-~g~~~eA-----~~~~~~al~~~p~~~~~~~~la~~~~~~g--~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~ 281 (788)
++.. .|..++| +.+|++++.++|++..+|++++.++...| ++++|++.++++ +.+|++..++..+|.+|.+
T Consensus 243 ~l~~l~~~~~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~ 321 (382)
T 2h6f_A 243 VISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYED 321 (382)
T ss_dssp HHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHH
T ss_pred HHHHhcCcchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHH
Confidence 9999 5665888 59999999999999999999999999988 699999999998 9999999999999999999
Q ss_pred cC---------CHHHHHHHHHHH-HhhCCCChhhHHhHHH
Q 003891 282 AG---------SISLAIDAYEQC-LKIDPDSRNAGQNRLL 311 (788)
Q Consensus 282 ~g---------~~~eA~~~~~~a-l~l~p~~~~a~~~~ll 311 (788)
+| .+++|+++|+++ ++++|.....|..+..
T Consensus 322 ~~~~~~~~~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~ 361 (382)
T 2h6f_A 322 MLENQCDNKEDILNKALELCEILAKEKDTIRKEYWRYIGR 361 (382)
T ss_dssp HHHTTCSSHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred HhcccccchHHHHHHHHHHHHHHHHHhCchhHHHHHHHHH
Confidence 85 359999999999 9999998888776543
No 25
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.95 E-value=1.7e-25 Score=252.14 Aligned_cols=300 Identities=16% Similarity=0.128 Sum_probs=252.5
Q ss_pred HHHHHHHHHHcCCCCh--hhHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHc
Q 003891 2 LVASYHKALSADPSYK--PAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKI--------DPHYAPAYYNLGVVYSEL 71 (788)
Q Consensus 2 Ai~~~~kaL~~~P~~~--~a~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~ 71 (788)
|++.|++++++.+... ......+.++.++|.+|...|++++|+.+|++++++ .+..+.++..+|.++...
T Consensus 70 Al~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~ 149 (472)
T 4g1t_A 70 ALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKC 149 (472)
T ss_dssp HHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHH
Confidence 7899999998733211 111123455888999999999999999999999987 345678899999888765
Q ss_pred --CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH---HCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhc
Q 003891 72 --MQYDTALGCYEKAALERPMYAEAYCNMGVIYK---NRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLE 146 (788)
Q Consensus 72 --g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~---~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~ 146 (788)
++|++|+.+|+++++++|+++.++..++.++. ..++.++|++.++++++++|++...+..++..+..+ +...
T Consensus 150 ~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~~~~l~~~~~~~---~~~~ 226 (472)
T 4g1t_A 150 GGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKM---REEG 226 (472)
T ss_dssp CTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHHHHHHHHHHHHC---C---
T ss_pred ccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHH---Hhhh
Confidence 47999999999999999999999999998855 467889999999999999999988877776655443 4556
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc------------
Q 003891 147 GDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDR------------ 214 (788)
Q Consensus 147 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~------------ 214 (788)
+++++|++++++++..+|....++..+|.+|...|++++|+..++++++.+|++..++.++|.+|...
T Consensus 227 ~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~ 306 (472)
T 4g1t_A 227 EEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGM 306 (472)
T ss_dssp ---CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred hHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 78999999999999999999999999999999999999999999999999999999999999988653
Q ss_pred -------CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---HHHHHHHHH-HHcC
Q 003891 215 -------DNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAE---AYNNLGVLY-RDAG 283 (788)
Q Consensus 215 -------g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~---~~~~la~~~-~~~g 283 (788)
+.+++|+..++++++.+|.+..++..+|.++...|++++|+++|++++++.+++.. ++..+|.++ ...|
T Consensus 307 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (472)
T 4g1t_A 307 YGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMK 386 (472)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSS
T ss_pred HHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCC
Confidence 34678999999999999999999999999999999999999999999999887643 466677654 5789
Q ss_pred CHHHHHHHHHHHHhhCCCChh
Q 003891 284 SISLAIDAYEQCLKIDPDSRN 304 (788)
Q Consensus 284 ~~~eA~~~~~~al~l~p~~~~ 304 (788)
++++|+.+|+++++++|++..
T Consensus 387 ~~~~Ai~~y~kal~i~~~~~~ 407 (472)
T 4g1t_A 387 CEDKAIHHFIEGVKINQKSRE 407 (472)
T ss_dssp CHHHHHHHHHHHHHSCCCCHH
T ss_pred CHHHHHHHHHHHHhcCcccHH
Confidence 999999999999998887654
No 26
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.95 E-value=4.5e-25 Score=248.63 Aligned_cols=302 Identities=17% Similarity=0.126 Sum_probs=258.2
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHh---------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------
Q 003891 24 AIVLTDLGTSLKLAGNTQDGIQKYYEALKI---------DPHYAPAYYNLGVVYSELMQYDTALGCYEKAALE------- 87 (788)
Q Consensus 24 a~~l~~lg~~~~~~g~~~~A~~~~~~al~~---------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~------- 87 (788)
+.++..+|.++..+|++++|+++|++++++ +|....+|.++|.+|..+|++++|+.++++++++
T Consensus 51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~ 130 (472)
T 4g1t_A 51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSP 130 (472)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccc
Confidence 556888999999999999999999999986 6777889999999999999999999999999886
Q ss_pred -CCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHhCC
Q 003891 88 -RPMYAEAYCNMGVIYKNR--GDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNW 164 (788)
Q Consensus 88 -~p~~~~~~~~la~~~~~~--g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p 164 (788)
.+..+.++..+|.++... +++++|+++|+++++++|+++..+..++.++..++ ..++.++|++.++++++++|
T Consensus 131 ~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~----~~~~~~~al~~~~~al~l~p 206 (472)
T 4g1t_A 131 YRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLD----NWPPSQNAIDPLRQAIRLNP 206 (472)
T ss_dssp SCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHH----HSCCCCCTHHHHHHHHHHCS
T ss_pred cchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc----CchHHHHHHHHHHHHhhcCC
Confidence 345688999998877664 57999999999999999999988888877766554 35788899999999999999
Q ss_pred CCHHHHHHHHHHHHH----cCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHH
Q 003891 165 HYADAMYNLGVAYGE----MLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNN 240 (788)
Q Consensus 165 ~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~ 240 (788)
++..++..+|..+.. .+++++|++++++++..+|....++.++|.+|...|++++|+..|+++++.+|++..++..
T Consensus 207 ~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 286 (472)
T 4g1t_A 207 DNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQ 286 (472)
T ss_dssp SCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHH
T ss_pred cchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHH
Confidence 999999988877655 4678899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHc-------------------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 003891 241 LGVVYTVQ-------------------GKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPD 301 (788)
Q Consensus 241 la~~~~~~-------------------g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~ 301 (788)
+|.+|... +.+++|+..++++++.+|.+..++..+|.+|...|++++|+++|+++++++|+
T Consensus 287 lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~ 366 (472)
T 4g1t_A 287 IGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELT 366 (472)
T ss_dssp HHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCC
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCC
Confidence 99998653 34788999999999999999999999999999999999999999999999988
Q ss_pred ChhhHHh-HHHH-hhhccCCCchHHHHHHH
Q 003891 302 SRNAGQN-RLLA-MNYINEGHDDKLFEAHR 329 (788)
Q Consensus 302 ~~~a~~~-~lla-~~~l~~g~~~~~~~~~~ 329 (788)
+.....- ..++ ..+...++.+++.+.++
T Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~ 396 (472)
T 4g1t_A 367 PVAKQLLHLRYGNFQLYQMKCEDKAIHHFI 396 (472)
T ss_dssp HHHHHHHHHHHHHHHHHTSSCHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 6553211 1111 22335677777665544
No 27
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.94 E-value=1.3e-24 Score=222.79 Aligned_cols=238 Identities=17% Similarity=0.176 Sum_probs=152.4
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------HHHH
Q 003891 23 LAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMY-------AEAY 95 (788)
Q Consensus 23 la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~-------~~~~ 95 (788)
.+..+..+|..+...|++++|+.+|+++++.+ .+..++..+|.++...|++++|+..++++++..|.. ..++
T Consensus 4 ~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 4 MADKEKAEGNKFYKARQFDEAIEHYNKAWELH-KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 35567777777777788888888888887777 777777788888888888888888888777776655 5777
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 003891 96 CNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGV 175 (788)
Q Consensus 96 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 175 (788)
..+|.++...|++++|+.+|++++++.|.. .++.. .|++++|+..+++++..+|.+..++..+|.
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~--------~~~~~-------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 147 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYYQKSLTEHRTA--------DILTK-------LRNAEKELKKAEAEAYVNPEKAEEARLEGK 147 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCCH--------HHHHH-------HHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcCchh--------HHHHH-------HhHHHHHHHHHHHHHHcCcchHHHHHHHHH
Confidence 777777777777777777777777776651 12222 235566666666666655555555555555
Q ss_pred HHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHH
Q 003891 176 AYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAA 255 (788)
Q Consensus 176 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~ 255 (788)
++...|++++|+..|+++++.+|.+..++..+|.++...|++++|+.+++++++.+|++..++..+|.++...|++++|+
T Consensus 148 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~ 227 (258)
T 3uq3_A 148 EYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASAL 227 (258)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 55555555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHHHHHHHhC------CCCHHHHHHHH
Q 003891 256 EMIEKAIAAN------PTYAEAYNNLG 276 (788)
Q Consensus 256 ~~l~kal~~~------p~~~~~~~~la 276 (788)
.+++++++++ |++..++..++
T Consensus 228 ~~~~~a~~~~~~~~~~p~~~~~~~~l~ 254 (258)
T 3uq3_A 228 ETLDAARTKDAEVNNGSSAREIDQLYY 254 (258)
T ss_dssp HHHHHHHHHHHHHHTTTTHHHHHHHHH
T ss_pred HHHHHHHHhChhhcCCCchHHHHHHHH
Confidence 5555555555 54444444443
No 28
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.93 E-value=1.4e-24 Score=222.48 Aligned_cols=243 Identities=18% Similarity=0.206 Sum_probs=224.7
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Q 003891 57 YAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIAL 136 (788)
Q Consensus 57 ~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l 136 (788)
.+..+..+|.++...|++++|+.+|+++++.+ .+..++..+|.++...|++++|+.++++++++.|+..........++
T Consensus 4 ~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 4 MADKEKAEGNKFYKARQFDEAIEHYNKAWELH-KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 46789999999999999999999999999999 88999999999999999999999999999999876532233345677
Q ss_pred HHhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC
Q 003891 137 TDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDN 216 (788)
Q Consensus 137 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 216 (788)
..+|.++...|++++|+.+++++++..|. +.++...|++++|+..+++++..+|.+..++..+|.++...|+
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~~~a~~~~~~--------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYYQKSLTEHRT--------ADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSD 154 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCC--------HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcCch--------hHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcC
Confidence 78888888899999999999999999987 5677888899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003891 217 LDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCL 296 (788)
Q Consensus 217 ~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al 296 (788)
+++|+.+|+++++.+|.+..++..+|.++...|++++|+.+++++++.+|+++.++..+|.++..+|++++|+.+|++++
T Consensus 155 ~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 234 (258)
T 3uq3_A 155 WPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAAR 234 (258)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhC------CCChhhHHh
Q 003891 297 KID------PDSRNAGQN 308 (788)
Q Consensus 297 ~l~------p~~~~a~~~ 308 (788)
+++ |++..+...
T Consensus 235 ~~~~~~~~~p~~~~~~~~ 252 (258)
T 3uq3_A 235 TKDAEVNNGSSAREIDQL 252 (258)
T ss_dssp HHHHHHHTTTTHHHHHHH
T ss_pred HhChhhcCCCchHHHHHH
Confidence 999 777665543
No 29
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.93 E-value=6.2e-25 Score=227.90 Aligned_cols=248 Identities=17% Similarity=0.151 Sum_probs=206.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHH
Q 003891 58 APAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALT 137 (788)
Q Consensus 58 ~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~ 137 (788)
++.++.+|.+++..|++++|+..|+++++.+|.+..++..+|.++...|++++|+..++++++ .+.+... .+.++.
T Consensus 3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~---~~~~~~ 78 (272)
T 3u4t_A 3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATKA---KSADFE 78 (272)
T ss_dssp --CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTC---CHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchhH---HHHHHH
Confidence 456777888888888888888888888888888888888888888888888888888888887 3332211 234556
Q ss_pred HhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCH
Q 003891 138 DLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNL 217 (788)
Q Consensus 138 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 217 (788)
.+|.++...|++++|+.+|+++++.+|.+..++..+|.++...|++++|+..|+++++.+|.+..++..+|......+++
T Consensus 79 ~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~ 158 (272)
T 3u4t_A 79 YYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEY 158 (272)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHH
Confidence 66777777788888888888888888888899999999999999999999999999999999999999999445555699
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhC---CC-----CHHHHHHHHHHHHHcCCHH
Q 003891 218 DKAVECYQMALSIKPNFSQSLNNLGVVYTVQGK---MDAAAEMIEKAIAAN---PT-----YAEAYNNLGVLYRDAGSIS 286 (788)
Q Consensus 218 ~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~---~~eA~~~l~kal~~~---p~-----~~~~~~~la~~~~~~g~~~ 286 (788)
++|+.+|+++++.+|++..++..+|.++...|+ +++|+..++++++.. |+ ...++..+|.+|...|+++
T Consensus 159 ~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 238 (272)
T 3u4t_A 159 VKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKV 238 (272)
T ss_dssp HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHH
Confidence 999999999999999999999999999999998 888999999999885 44 2368889999999999999
Q ss_pred HHHHHHHHHHhhCCCChhhHHhH
Q 003891 287 LAIDAYEQCLKIDPDSRNAGQNR 309 (788)
Q Consensus 287 eA~~~~~~al~l~p~~~~a~~~~ 309 (788)
+|+++|+++++++|++..++..+
T Consensus 239 ~A~~~~~~al~~~p~~~~a~~~l 261 (272)
T 3u4t_A 239 KADAAWKNILALDPTNKKAIDGL 261 (272)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHhcCccHHHHHHHh
Confidence 99999999999999999887653
No 30
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.93 E-value=2.8e-24 Score=228.70 Aligned_cols=263 Identities=18% Similarity=0.209 Sum_probs=235.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHH
Q 003891 58 APAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALT 137 (788)
Q Consensus 58 ~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~ 137 (788)
...++.+|..+...|++++|+..|+++++.+|++..++..+|.++...|++++|+.+++++++..|++...+..
T Consensus 21 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~------ 94 (327)
T 3cv0_A 21 HENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAA------ 94 (327)
T ss_dssp SSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH------
T ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHH------
Confidence 45689999999999999999999999999999999999999999999999999999999999999998765554
Q ss_pred HhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHH--------------HH-HHHHcCChHHHHHHHHHHHhcCCCCHH
Q 003891 138 DLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNL--------------GV-AYGEMLKFDMAIVFYELAFHFNPHCAE 202 (788)
Q Consensus 138 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l--------------a~-~~~~~g~~~~A~~~~~~al~~~p~~~~ 202 (788)
+|.++...|++++|+..++++++..|.+...+..+ +. ++...|++++|+..++++++..|.+..
T Consensus 95 -la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 173 (327)
T 3cv0_A 95 -LAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQ 173 (327)
T ss_dssp -HHHHHHHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTTCHH
T ss_pred -HHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHH
Confidence 45555557799999999999999999988777766 66 688899999999999999999999999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 003891 203 ACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDA 282 (788)
Q Consensus 203 ~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~ 282 (788)
++..+|.++...|++++|+.+++++++.+|++..++..+|.++...|++++|+..++++++..|++..++..+|.++..+
T Consensus 174 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~ 253 (327)
T 3cv0_A 174 LHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNM 253 (327)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhhCCC------------ChhhHHhHHHHhhhccCCCchHHHHHHH
Q 003891 283 GSISLAIDAYEQCLKIDPD------------SRNAGQNRLLAMNYINEGHDDKLFEAHR 329 (788)
Q Consensus 283 g~~~eA~~~~~~al~l~p~------------~~~a~~~~lla~~~l~~g~~~~~~~~~~ 329 (788)
|++++|+++|++++++.|+ +..++. .++..+...|+.+++.+..+
T Consensus 254 g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~g~~~~A~~~~~ 310 (327)
T 3cv0_A 254 SQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWD--FFRMLLNVMNRPDLVELTYA 310 (327)
T ss_dssp TCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHH--HHHHHHHHTTCHHHHHHHTT
T ss_pred ccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHH--HHHHHHHhcCCHHHHHHHHH
Confidence 9999999999999999998 455544 46677777888877665543
No 31
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.93 E-value=2.7e-24 Score=223.01 Aligned_cols=250 Identities=16% Similarity=0.145 Sum_probs=221.1
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHH
Q 003891 26 VLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMY----AEAYCNMGVI 101 (788)
Q Consensus 26 ~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~----~~~~~~la~~ 101 (788)
.++.+|..++..|++++|+..|+++++.+|++..+++.+|.++...|++++|+..++++++ .|.+ ..++..+|.+
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~lg~~ 83 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATKAKSADFEYYGKI 83 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHHHHH
Confidence 3778899999999999999999999999999999999999999999999999999999999 3333 5569999999
Q ss_pred HHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 003891 102 YKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEML 181 (788)
Q Consensus 102 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 181 (788)
+...|++++|+.+|+++++.+|++...+.. +|.++...|++++|+.+++++++.+|.+..++..+|...+..+
T Consensus 84 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~-------l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~ 156 (272)
T 3u4t_A 84 LMKKGQDSLAIQQYQAAVDRDTTRLDMYGQ-------IGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNK 156 (272)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCTHHHHH-------HHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHcccHHHHHHHHHHHHhcCcccHHHHHH-------HHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHH
Confidence 999999999999999999999998765554 4555555779999999999999999999999999995555567
Q ss_pred ChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhhC---CC-----CHHHHHHHHHHHHHcCC
Q 003891 182 KFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDN---LDKAVECYQMALSIK---PN-----FSQSLNNLGVVYTVQGK 250 (788)
Q Consensus 182 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~---~~eA~~~~~~al~~~---p~-----~~~~~~~la~~~~~~g~ 250 (788)
++++|+..|+++++.+|++..++..+|.++...|+ +++|+..|+++++.. |+ ...++..+|.+|...|+
T Consensus 157 ~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 236 (272)
T 3u4t_A 157 EYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRD 236 (272)
T ss_dssp CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999 999999999999885 44 23688999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 003891 251 MDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAG 283 (788)
Q Consensus 251 ~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g 283 (788)
+++|+++++++++++|+++.++..++.+....+
T Consensus 237 ~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~ 269 (272)
T 3u4t_A 237 KVKADAAWKNILALDPTNKKAIDGLKMKLEHHH 269 (272)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHC-------
T ss_pred HHHHHHHHHHHHhcCccHHHHHHHhhhhhcccc
Confidence 999999999999999999999988887765443
No 32
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.92 E-value=7.7e-24 Score=212.85 Aligned_cols=210 Identities=21% Similarity=0.178 Sum_probs=134.5
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHH
Q 003891 55 PHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAI 134 (788)
Q Consensus 55 p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 134 (788)
|.++.+++.+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++++|++...+..++.
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~ 81 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSE 81 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 56777888888888888888888888888888888888888888888888888888888888888888888877777766
Q ss_pred HHHHhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Q 003891 135 ALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDR 214 (788)
Q Consensus 135 ~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 214 (788)
++..++.. .+. .....|++++|+..|+++++.+|++..++.++|.++...
T Consensus 82 ~~~~~~~~---~~~---------------------------~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~ 131 (217)
T 2pl2_A 82 AYVALYRQ---AED---------------------------RERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALL 131 (217)
T ss_dssp HHHHHHHT---CSS---------------------------HHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHhhhh---hhh---------------------------hcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHc
Confidence 66554200 000 112335556666666666666666666666666666666
Q ss_pred CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 003891 215 DNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQ 294 (788)
Q Consensus 215 g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~ 294 (788)
|++++|+..|+++++++ +++.++.++|.++...|++++|+..|+++++.+|+++.++..+|.++..+|++++|++.|++
T Consensus 132 g~~~~A~~~~~~al~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~ 210 (217)
T 2pl2_A 132 GERDKAEASLKQALALE-DTPEIRSALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAAL 210 (217)
T ss_dssp TCHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC-------------
T ss_pred CChHHHHHHHHHHHhcc-cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 66666666666666666 56666666666666666666666666666666666666666666666666666666666655
Q ss_pred H
Q 003891 295 C 295 (788)
Q Consensus 295 a 295 (788)
+
T Consensus 211 ~ 211 (217)
T 2pl2_A 211 E 211 (217)
T ss_dssp -
T ss_pred H
Confidence 4
No 33
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.92 E-value=7.2e-24 Score=213.07 Aligned_cols=180 Identities=19% Similarity=0.238 Sum_probs=131.4
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc-----------CC
Q 003891 148 DINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDR-----------DN 216 (788)
Q Consensus 148 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-----------g~ 216 (788)
++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++.+|++..++.++|.++... |+
T Consensus 20 ~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~ 99 (217)
T 2pl2_A 20 RYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGY 99 (217)
T ss_dssp CHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTCSSHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhcccccC
Confidence 4444444444444444444445555555555555555555555555555555555555555555555 99
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003891 217 LDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCL 296 (788)
Q Consensus 217 ~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al 296 (788)
+++|+..|+++++.+|+++.++.++|.++...|++++|+..|+++++++ +++.++.++|.+|..+|++++|+..|++++
T Consensus 100 ~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al 178 (217)
T 2pl2_A 100 LEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE-DTPEIRSALAELYLSMGRLDEALAQYAKAL 178 (217)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cchHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999 999999999999999999999999999999
Q ss_pred hhCCCChhhHHhHHHHhhhccCCCchHHHHHHHH
Q 003891 297 KIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHRD 330 (788)
Q Consensus 297 ~l~p~~~~a~~~~lla~~~l~~g~~~~~~~~~~~ 330 (788)
+++|++..++.+ ++..+...|+.+++.+..++
T Consensus 179 ~~~P~~~~~~~~--la~~~~~~g~~~~A~~~~~~ 210 (217)
T 2pl2_A 179 EQAPKDLDLRVR--YASALLLKGKAEEAARAAAL 210 (217)
T ss_dssp HHSTTCHHHHHH--HHHHHTC-------------
T ss_pred HhCCCChHHHHH--HHHHHHHccCHHHHHHHHHH
Confidence 999999988776 56677888888887765543
No 34
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.92 E-value=2e-24 Score=237.28 Aligned_cols=278 Identities=25% Similarity=0.310 Sum_probs=242.0
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCCHH
Q 003891 24 AIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHY----APAYYNLGVVYSELMQYDTALGCYEKAALE------RPMYAE 93 (788)
Q Consensus 24 a~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~lg~~~~~~g~~~~A~~~~~kal~~------~p~~~~ 93 (788)
+..+..+|..+...|++++|+.+|+++++..|++ ..++..+|.++...|++++|+.+++++++. .|....
T Consensus 9 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 88 (406)
T 3sf4_A 9 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAK 88 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHH
Confidence 3457889999999999999999999999999998 468999999999999999999999999876 344577
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhcCC--------------------HHHHH
Q 003891 94 AYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGD--------------------INQGV 153 (788)
Q Consensus 94 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~g~--------------------~~~A~ 153 (788)
++..+|.++...|++++|+.++++++++.+.... ....+.++..+|.++...|+ +++|+
T Consensus 89 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~ 167 (406)
T 3sf4_A 89 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELND-KVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAV 167 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccc-ccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHH
Confidence 8999999999999999999999999998765322 12346677788888888889 99999
Q ss_pred HHHHHHHHhC------CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHcCCHHHHH
Q 003891 154 AYYKKALYYN------WHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHC------AEACNNLGVIYKDRDNLDKAV 221 (788)
Q Consensus 154 ~~~~~al~~~------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~eA~ 221 (788)
.++++++++. +....++..+|.++...|++++|+..++++++..+.. ..++.++|.++...|++++|+
T Consensus 168 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 247 (406)
T 3sf4_A 168 DFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETAS 247 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHH
Confidence 9999998762 3335678999999999999999999999999875543 348999999999999999999
Q ss_pred HHHHHHHhhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHH
Q 003891 222 ECYQMALSIKPNF------SQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTY------AEAYNNLGVLYRDAGSISLAI 289 (788)
Q Consensus 222 ~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~------~~~~~~la~~~~~~g~~~eA~ 289 (788)
.+++++++..+.. ..++..+|.++...|++++|+.++++++++.+.. ..++..+|.+|..+|++++|+
T Consensus 248 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 327 (406)
T 3sf4_A 248 EYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAM 327 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 9999999886655 6689999999999999999999999999885443 678999999999999999999
Q ss_pred HHHHHHHhhCCCC
Q 003891 290 DAYEQCLKIDPDS 302 (788)
Q Consensus 290 ~~~~~al~l~p~~ 302 (788)
.+|++++++.+..
T Consensus 328 ~~~~~al~~~~~~ 340 (406)
T 3sf4_A 328 HFAEKHLEISREV 340 (406)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHh
Confidence 9999999885543
No 35
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.92 E-value=4.7e-23 Score=216.89 Aligned_cols=260 Identities=12% Similarity=0.017 Sum_probs=228.7
Q ss_pred HHHHcCChHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHH
Q 003891 33 SLKLAGNTQDGIQKYYEALKIDPHY-APAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESA 111 (788)
Q Consensus 33 ~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g~~~~A 111 (788)
..+..|+|.+|+..+++....+|++ .+....++.+|..+|++++|+..++. .+|....++..++..+...++.++|
T Consensus 8 ~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~~~~~~~a~~~la~~~~~~~~~~~A 84 (291)
T 3mkr_A 8 NAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP---SSAPELQAVRMFAEYLASHSRRDAI 84 (291)
T ss_dssp HHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---TSCHHHHHHHHHHHHHHCSTTHHHH
T ss_pred HHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---cCChhHHHHHHHHHHHcCCCcHHHH
Confidence 4567899999999999887777776 46788899999999999999998866 2565678899999999999999999
Q ss_pred HHHHHHHHhh--CCCcHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHH
Q 003891 112 IACYERCLAV--SPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVF 189 (788)
Q Consensus 112 ~~~~~~al~~--~p~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 189 (788)
++.+++++.. +|++...+.. +|.++...|++++|++.+++ |.+.+++..+|.++..+|++++|++.
T Consensus 85 ~~~l~~ll~~~~~P~~~~~~~~-------la~~~~~~g~~~~Al~~l~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~ 152 (291)
T 3mkr_A 85 VAELDREMSRSVDVTNTTFLLM-------AASIYFYDQNPDAALRTLHQ-----GDSLECMAMTVQILLKLDRLDLARKE 152 (291)
T ss_dssp HHHHHHHHHSCCCCSCHHHHHH-------HHHHHHHTTCHHHHHHHHTT-----CCSHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHhcccCCCCHHHHHH-------HHHHHHHCCCHHHHHHHHhC-----CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 9999999876 5888765544 45555557799999999998 89999999999999999999999999
Q ss_pred HHHHHhcCCCCHHHHHHHH--HHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 003891 190 YELAFHFNPHCAEACNNLG--VIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPT 267 (788)
Q Consensus 190 ~~~al~~~p~~~~~~~~la--~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~ 267 (788)
++++++.+|++.......+ .++...|++++|+.+|+++++..|+++.+++++|.++..+|++++|+..|+++++.+|+
T Consensus 153 l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~ 232 (291)
T 3mkr_A 153 LKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSG 232 (291)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHhhCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 9999999999865444433 44445689999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCHHH-HHHHHHHHHhhCCCChhhHH
Q 003891 268 YAEAYNNLGVLYRDAGSISL-AIDAYEQCLKIDPDSRNAGQ 307 (788)
Q Consensus 268 ~~~~~~~la~~~~~~g~~~e-A~~~~~~al~l~p~~~~a~~ 307 (788)
+++++.++|.++...|+..+ +.++++++++++|+++.+..
T Consensus 233 ~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~d 273 (291)
T 3mkr_A 233 HPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIKE 273 (291)
T ss_dssp CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHHH
Confidence 99999999999999999976 57899999999999987643
No 36
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.92 E-value=7.4e-24 Score=225.46 Aligned_cols=277 Identities=25% Similarity=0.304 Sum_probs=237.1
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCCHHH
Q 003891 25 IVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHY----APAYYNLGVVYSELMQYDTALGCYEKAALE------RPMYAEA 94 (788)
Q Consensus 25 ~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~lg~~~~~~g~~~~A~~~~~kal~~------~p~~~~~ 94 (788)
..++..|..+...|++++|+..|+++++..|++ ..++..+|.++...|++++|+.+++++++. .+....+
T Consensus 6 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 85 (338)
T 3ro2_A 6 LELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKA 85 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHH
Confidence 347788999999999999999999999999998 478899999999999999999999999876 3445778
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhcCC--------------------HHHHHH
Q 003891 95 YCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGD--------------------INQGVA 154 (788)
Q Consensus 95 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~g~--------------------~~~A~~ 154 (788)
+..+|.++...|++++|+.++++++++.+.... ....+.++..+|.++...|+ +++|+.
T Consensus 86 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~ 164 (338)
T 3ro2_A 86 SGNLGNTLKVLGNFDEAIVCCQRHLDISRELND-KVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVD 164 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcC-chHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHH
Confidence 999999999999999999999999988654322 12345677778888888888 999999
Q ss_pred HHHHHHHhC------CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHcCCHHHHHH
Q 003891 155 YYKKALYYN------WHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHC------AEACNNLGVIYKDRDNLDKAVE 222 (788)
Q Consensus 155 ~~~~al~~~------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~eA~~ 222 (788)
++++++... +....++..+|.++...|++++|+..++++++..+.. ..++..+|.++...|++++|+.
T Consensus 165 ~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 244 (338)
T 3ro2_A 165 LYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASE 244 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 999998762 2334578999999999999999999999999875432 3489999999999999999999
Q ss_pred HHHHHHhhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHH
Q 003891 223 CYQMALSIKPNF------SQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTY------AEAYNNLGVLYRDAGSISLAID 290 (788)
Q Consensus 223 ~~~~al~~~p~~------~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~------~~~~~~la~~~~~~g~~~eA~~ 290 (788)
+++++++..+.. ..++..+|.++...|++++|+.+++++++..+.. ..++..+|.+|..+|++++|..
T Consensus 245 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 324 (338)
T 3ro2_A 245 YYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMH 324 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHH
Confidence 999999886554 6688999999999999999999999999885432 5588899999999999999999
Q ss_pred HHHHHHhhCCCC
Q 003891 291 AYEQCLKIDPDS 302 (788)
Q Consensus 291 ~~~~al~l~p~~ 302 (788)
++++++++.++.
T Consensus 325 ~~~~a~~~~~~~ 336 (338)
T 3ro2_A 325 FAEKHLEISREV 336 (338)
T ss_dssp HHHHHHHC----
T ss_pred HHHHHHHHHHhh
Confidence 999999987753
No 37
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.91 E-value=1.3e-23 Score=231.94 Aligned_cols=279 Identities=24% Similarity=0.297 Sum_probs=242.4
Q ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCC
Q 003891 22 CLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYA----PAYYNLGVVYSELMQYDTALGCYEKAALE------RPMY 91 (788)
Q Consensus 22 ~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~lg~~~~~~g~~~~A~~~~~kal~~------~p~~ 91 (788)
..+..+..+|..+...|++++|+..|+++++..|++. .++..+|.++...|++++|+.+++++++. .+..
T Consensus 46 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 125 (411)
T 4a1s_A 46 SMCLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGE 125 (411)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHH
Confidence 4566688999999999999999999999999999986 58999999999999999999999999987 4667
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhcCC-----------------HHHHHH
Q 003891 92 AEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGD-----------------INQGVA 154 (788)
Q Consensus 92 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~g~-----------------~~~A~~ 154 (788)
..++..+|.+|...|++++|+.++++++++.+... .....+.++..+|.++...|+ +++|+.
T Consensus 126 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~ 204 (411)
T 4a1s_A 126 AKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLG-DRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVE 204 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhh-chHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHH
Confidence 78999999999999999999999999998843321 112345667777777777888 999999
Q ss_pred HHHHHHHhC------CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHcCCHHHHHH
Q 003891 155 YYKKALYYN------WHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHC------AEACNNLGVIYKDRDNLDKAVE 222 (788)
Q Consensus 155 ~~~~al~~~------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~eA~~ 222 (788)
++++++++. +....++..+|.++...|++++|+.+++++++..+.. ..++.++|.++...|++++|+.
T Consensus 205 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 284 (411)
T 4a1s_A 205 FYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAE 284 (411)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHH
Confidence 999998764 2234588999999999999999999999999886543 3488999999999999999999
Q ss_pred HHHHHHhhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHH
Q 003891 223 CYQMALSIKPNF------SQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTY------AEAYNNLGVLYRDAGSISLAID 290 (788)
Q Consensus 223 ~~~~al~~~p~~------~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~------~~~~~~la~~~~~~g~~~eA~~ 290 (788)
+|+++++..+.. ..++..+|.++...|++++|+.++++++.+.+.. ..++..+|.+|..+|++++|.+
T Consensus 285 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 364 (411)
T 4a1s_A 285 HYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALK 364 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHH
Confidence 999999987644 6689999999999999999999999999885432 5689999999999999999999
Q ss_pred HHHHHHhhCCC
Q 003891 291 AYEQCLKIDPD 301 (788)
Q Consensus 291 ~~~~al~l~p~ 301 (788)
+|++++++.+.
T Consensus 365 ~~~~al~~~~~ 375 (411)
T 4a1s_A 365 YAEQHLQLAXX 375 (411)
T ss_dssp HHHHHHHHCCH
T ss_pred HHHHHHHHHhh
Confidence 99999998775
No 38
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.90 E-value=2e-23 Score=229.34 Aligned_cols=282 Identities=23% Similarity=0.299 Sum_probs=242.9
Q ss_pred HHHHHHHHHHcCCCChhhHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHcCCHH
Q 003891 2 LVASYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKI------DPHYAPAYYNLGVVYSELMQYD 75 (788)
Q Consensus 2 Ai~~~~kaL~~~P~~~~a~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~lg~~~~~~g~~~ 75 (788)
|+..|+++++..|++... .+.++..+|.++...|++++|+.+|+++++. .|....++..+|.++...|+++
T Consensus 28 A~~~~~~al~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 104 (406)
T 3sf4_A 28 GVSFFEAAVQVGTEDLKT---LSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFD 104 (406)
T ss_dssp HHHHHHHHHHHCCSCHHH---HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHhcCcccHHH---HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHcCCHH
Confidence 789999999999987653 5677999999999999999999999999887 3445778999999999999999
Q ss_pred HHHHHHHHHHHhCCCC------HHHHHHHHHHHHHCCC--------------------HHHHHHHHHHHHhhCCCcHHHH
Q 003891 76 TALGCYEKAALERPMY------AEAYCNMGVIYKNRGD--------------------LESAIACYERCLAVSPNFEIAK 129 (788)
Q Consensus 76 ~A~~~~~kal~~~p~~------~~~~~~la~~~~~~g~--------------------~~~A~~~~~~al~~~p~~~~~~ 129 (788)
+|+.+++++++..+.. ..++..+|.+|...|+ +++|+.++++++++.+... ..
T Consensus 105 ~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~-~~ 183 (406)
T 3sf4_A 105 EAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALG-DR 183 (406)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTT-CH
T ss_pred HHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhcc-Cc
Confidence 9999999999876542 5689999999999999 9999999999988743321 12
Q ss_pred HHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC---
Q 003891 130 NNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYA------DAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHC--- 200 (788)
Q Consensus 130 ~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~------~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--- 200 (788)
...+.++..+|.++...|++++|+.+++++++..+... .++..+|.++...|++++|+.++++++...+..
T Consensus 184 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 263 (406)
T 3sf4_A 184 AAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDR 263 (406)
T ss_dssp HHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCc
Confidence 33467788889999999999999999999998865543 389999999999999999999999999886654
Q ss_pred ---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-----
Q 003891 201 ---AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNF------SQSLNNLGVVYTVQGKMDAAAEMIEKAIAANP----- 266 (788)
Q Consensus 201 ---~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p----- 266 (788)
..++..+|.++...|++++|+.+|+++++..+.. ..++..+|.+|...|++++|+.++++++++.+
T Consensus 264 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 343 (406)
T 3sf4_A 264 AVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDK 343 (406)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred hHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC
Confidence 7789999999999999999999999999885443 56889999999999999999999999998843
Q ss_pred -CCHHHHHHHHHHHHHcCCHHH
Q 003891 267 -TYAEAYNNLGVLYRDAGSISL 287 (788)
Q Consensus 267 -~~~~~~~~la~~~~~~g~~~e 287 (788)
....++..++.++...|+...
T Consensus 344 ~~~~~~~~~l~~~~~~~g~~~~ 365 (406)
T 3sf4_A 344 SGELTARLNLSDLQMVLGLSYS 365 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSC
T ss_pred cchhHHHHHHHHHHHHhhHhHH
Confidence 336788999999999987744
No 39
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.90 E-value=8.9e-22 Score=207.15 Aligned_cols=247 Identities=9% Similarity=-0.062 Sum_probs=212.8
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHH
Q 003891 27 LTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALE--RPMYAEAYCNMGVIYKN 104 (788)
Q Consensus 27 l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~--~p~~~~~~~~la~~~~~ 104 (788)
...++.++...|++++|+..++. .+|....++..++..+...+++++|++.+++++.. +|+++.+++.+|.++..
T Consensus 37 ~~~l~r~yi~~g~~~~al~~~~~---~~~~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~ 113 (291)
T 3mkr_A 37 DVFLYRAYLAQRKYGVVLDEIKP---SSAPELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFY 113 (291)
T ss_dssp HHHHHHHHHHTTCHHHHHHHSCT---TSCHHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHhcc---cCChhHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHH
Confidence 45567889999999999998866 25667788899999999999999999999999876 69999999999999999
Q ss_pred CCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHH--HHHHHcCC
Q 003891 105 RGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLG--VAYGEMLK 182 (788)
Q Consensus 105 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la--~~~~~~g~ 182 (788)
.|++++|++.+++ |.+...+.. ++.++...|++++|++.++++++.+|++.......+ .++...|+
T Consensus 114 ~g~~~~Al~~l~~-----~~~~~~~~~-------l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~ 181 (291)
T 3mkr_A 114 DQNPDAALRTLHQ-----GDSLECMAM-------TVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEK 181 (291)
T ss_dssp TTCHHHHHHHHTT-----CCSHHHHHH-------HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTH
T ss_pred CCCHHHHHHHHhC-----CCCHHHHHH-------HHHHHHHCCCHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhCchH
Confidence 9999999999998 777655544 455555577999999999999999999865544333 34445689
Q ss_pred hHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHH-HHHHHHHH
Q 003891 183 FDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDA-AAEMIEKA 261 (788)
Q Consensus 183 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~e-A~~~l~ka 261 (788)
+++|+..|+++++..|+++.+++++|.++..+|++++|+..|+++++.+|+++.++.++|.++...|+.++ +.++++++
T Consensus 182 ~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~ 261 (291)
T 3mkr_A 182 LQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQL 261 (291)
T ss_dssp HHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999976 57899999
Q ss_pred HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 003891 262 IAANPTYAEAYNNLGVLYRDAGSISLAIDAY 292 (788)
Q Consensus 262 l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~ 292 (788)
++++|+++.+. .+..+.+.++++..-|
T Consensus 262 ~~~~P~~~~~~----d~~~~~~~fd~~~~~~ 288 (291)
T 3mkr_A 262 KDAHRSHPFIK----EYRAKENDFDRLVLQY 288 (291)
T ss_dssp HHHCTTCHHHH----HHHHHHHHHHHHHHHH
T ss_pred HHhCCCChHHH----HHHHHHHHHHHHHHHc
Confidence 99999998765 3455666666666554
No 40
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.89 E-value=6.3e-22 Score=201.12 Aligned_cols=217 Identities=20% Similarity=0.242 Sum_probs=130.8
Q ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 003891 22 CLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVI 101 (788)
Q Consensus 22 ~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~ 101 (788)
..+..++.+|..+...|++++|+..|+++++.+|.+..++..+|.++...|++++|+..++++++.+|.+..++..+|.+
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 100 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNV 100 (243)
T ss_dssp ---------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 34556777777778888888888888888888888888888888888888888888888888888888777888888888
Q ss_pred HHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 003891 102 YKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEML 181 (788)
Q Consensus 102 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 181 (788)
+...|++++|+++++++++..|++...+.. +|.++...|++++|+.+++++++..|++..++..+|.++...|
T Consensus 101 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~-------~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 173 (243)
T 2q7f_A 101 YVVKEMYKEAKDMFEKALRAGMENGDLFYM-------LGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEG 173 (243)
T ss_dssp HHHTTCHHHHHHHHHHHHHHTCCSHHHHHH-------HHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT
T ss_pred HHHhccHHHHHHHHHHHHHhCCCCHHHHHH-------HHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcC
Confidence 888888887777777777777766543333 3333334456666666666666666666666666666666666
Q ss_pred ChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 003891 182 KFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVY 245 (788)
Q Consensus 182 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~ 245 (788)
++++|+..++++++..|++..++..+|.++...|++++|+.+|+++++.+|++..++..++.+.
T Consensus 174 ~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~ 237 (243)
T 2q7f_A 174 MLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKLLG 237 (243)
T ss_dssp CCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHHTC--
T ss_pred CHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHHHHHHH
Confidence 6666666666666665555555555666655556666666666555555555555555554443
No 41
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.89 E-value=7.4e-21 Score=197.80 Aligned_cols=232 Identities=22% Similarity=0.324 Sum_probs=198.5
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHhhCCCcHHHH
Q 003891 54 DPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKN----RGDLESAIACYERCLAVSPNFEIAK 129 (788)
Q Consensus 54 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~ 129 (788)
+|+++.+++.+|.++...|++++|+.+|+++++ +.+..+++.+|.+|.. .+++++|+.+|+++++.. +..
T Consensus 2 ~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~-- 75 (273)
T 1ouv_A 2 AEQDPKELVGLGAKSYKEKDFTQAKKYFEKACD--LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSN-- 75 (273)
T ss_dssp ---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHH--
T ss_pred CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--CHH--
Confidence 467788888999999999999999999998888 6778888899999998 899999999999988874 333
Q ss_pred HHHHHHHHHhhhhhhh----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHhcCCCCH
Q 003891 130 NNMAIALTDLGTKVKL----EGDINQGVAYYKKALYYNWHYADAMYNLGVAYGE----MLKFDMAIVFYELAFHFNPHCA 201 (788)
Q Consensus 130 ~~la~~l~~lg~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~ 201 (788)
++..+|.++.. .+++++|+.+|+++++. +++.++..+|.+|.. .+++++|+.+|+++++.. +.
T Consensus 76 -----a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~ 146 (273)
T 1ouv_A 76 -----GCHLLGNLYYSGQGVSQNTNKALQYYSKACDL--KYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN--DG 146 (273)
T ss_dssp -----HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--CH
T ss_pred -----HHHHHHHHHhCCCCcccCHHHHHHHHHHHHHc--CCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC--cH
Confidence 34445555555 77999999999999887 478899999999999 999999999999999875 67
Q ss_pred HHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHH
Q 003891 202 EACNNLGVIYKD----RDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTV----QGKMDAAAEMIEKAIAANPTYAEAYN 273 (788)
Q Consensus 202 ~~~~~la~~~~~----~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~eA~~~l~kal~~~p~~~~~~~ 273 (788)
.++.++|.++.. .+++++|+.+|+++++. .++.++..+|.+|.. .+++++|+++|+++++..+ +.+++
T Consensus 147 ~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~--~~a~~ 222 (273)
T 1ouv_A 147 DGCTILGSLYDAGRGTPKDLKKALASYDKACDL--KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN--GGGCF 222 (273)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC--HHHHH
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC--HHHHH
Confidence 889999999998 99999999999999987 467899999999999 9999999999999999866 78899
Q ss_pred HHHHHHHH----cCCHHHHHHHHHHHHhhCCCChh
Q 003891 274 NLGVLYRD----AGSISLAIDAYEQCLKIDPDSRN 304 (788)
Q Consensus 274 ~la~~~~~----~g~~~eA~~~~~~al~l~p~~~~ 304 (788)
.+|.+|.. .+++++|+++|++++++.|++..
T Consensus 223 ~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~ 257 (273)
T 1ouv_A 223 NLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKGAC 257 (273)
T ss_dssp HHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHcCCCcccCHHHHHHHHHHHHHcCCHHHH
Confidence 99999999 99999999999999999886443
No 42
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.89 E-value=6.3e-22 Score=201.09 Aligned_cols=218 Identities=22% Similarity=0.274 Sum_probs=136.2
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Q 003891 57 YAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIAL 136 (788)
Q Consensus 57 ~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l 136 (788)
.+..++.+|.++...|++++|+..|+++++.+|.+..++..+|.++...|++++|+..++++++..|++...+..+
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l---- 97 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGA---- 97 (243)
T ss_dssp --------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH----
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHH----
Confidence 3566777888888888888888888888888888888888888888888888888888888888777765444333
Q ss_pred HHhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC
Q 003891 137 TDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDN 216 (788)
Q Consensus 137 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 216 (788)
|.++...|++++|+.+++++++..|.+..++..+|.++...|++++|+..++++++..|++..++..+|.++...|+
T Consensus 98 ---a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 174 (243)
T 2q7f_A 98 ---GNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGM 174 (243)
T ss_dssp ---HHHHHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC
T ss_pred ---HHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCC
Confidence 33334455777777777777777777766666777777777777777777777666666666666666666666666
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 003891 217 LDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRD 281 (788)
Q Consensus 217 ~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~ 281 (788)
+++|+.+++++++..|++..++..+|.++...|++++|+.+++++++.+|++..++..++.+...
T Consensus 175 ~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~ 239 (243)
T 2q7f_A 175 LDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKLLGHH 239 (243)
T ss_dssp CHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHHTC----
T ss_pred HHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHHHHHHHhh
Confidence 66666666666666666666666666666666666666666666666666666666665555443
No 43
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.89 E-value=1.3e-19 Score=205.44 Aligned_cols=274 Identities=19% Similarity=0.174 Sum_probs=158.8
Q ss_pred HHHHHHHHHHcCCCChhhHHHHHHHHHHHHHHHHH----cCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCC
Q 003891 2 LVASYHKALSADPSYKPAAECLAIVLTDLGTSLKL----AGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSE----LMQ 73 (788)
Q Consensus 2 Ai~~~~kaL~~~P~~~~a~~~la~~l~~lg~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~----~g~ 73 (788)
|++.|+++++. +++.+ ++.+|..+.. .+++++|+.+|+++.+. .++.+++.+|.+|.. .++
T Consensus 62 A~~~~~~a~~~--~~~~a-------~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~ 130 (490)
T 2xm6_A 62 AMDWFRRAAEQ--GYTPA-------EYVLGLRYMNGEGVPQDYAQAVIWYKKAALK--GLPQAQQNLGVMYHEGNGVKVD 130 (490)
T ss_dssp HHHHHHHHHHT--TCHHH-------HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCC
T ss_pred HHHHHHHHHHC--CCHHH-------HHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCC
Confidence 56777777765 44444 5566666666 77778888888877664 467777777777777 677
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH-----------
Q 003891 74 YDTALGCYEKAALERPMYAEAYCNMGVIYKN----RGDLESAIACYERCLAVSPNFEIAKNNMAIALTD----------- 138 (788)
Q Consensus 74 ~~~A~~~~~kal~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~----------- 138 (788)
+++|+.+|+++.+. .++.+++.+|.+|.. .+++++|+++|+++++. .+..++..++.++..
T Consensus 131 ~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A 206 (490)
T 2xm6_A 131 KAESVKWFRLAAEQ--GRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ--GNVWSCNQLGYMYSRGLGVERNDAIS 206 (490)
T ss_dssp HHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHH
T ss_pred HHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCCCcCHHHH
Confidence 77777777777664 457777777777776 67777777777777765 234444444333322
Q ss_pred ------------------hhhhhhh----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCChHHHHHHHHH
Q 003891 139 ------------------LGTKVKL----EGDINQGVAYYKKALYYNWHYADAMYNLGVAYGE----MLKFDMAIVFYEL 192 (788)
Q Consensus 139 ------------------lg~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~ 192 (788)
+|.++.. .+++++|+.+|+++++. .+..+++.+|.+|.. .+++++|+.+|++
T Consensus 207 ~~~~~~a~~~~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~ 284 (490)
T 2xm6_A 207 AQWYRKSATSGDELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQ--GNSIAQFRLGYILEQGLAGAKEPLKALEWYRK 284 (490)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTT--TCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH
Confidence 2222222 34444444444444432 234444555555544 4555555555555
Q ss_pred HHhcCCCCHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHh
Q 003891 193 AFHFNPHCAEACNNLGVIYKDR-----DNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQG---KMDAAAEMIEKAIAA 264 (788)
Q Consensus 193 al~~~p~~~~~~~~la~~~~~~-----g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g---~~~eA~~~l~kal~~ 264 (788)
+.+. .+..+++.+|.+|... +++++|+.+|+++++. .++.+++++|.+|...| ++++|+++|+++++.
T Consensus 285 a~~~--~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~ 360 (490)
T 2xm6_A 285 SAEQ--GNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ--GDATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK 360 (490)
T ss_dssp HHTT--TCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT
T ss_pred HHHc--CCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC
Confidence 5433 3344555555555554 5555555555555543 33455555555555544 555555555555554
Q ss_pred CCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhh
Q 003891 265 NPTYAEAYNNLGVLYRD----AGSISLAIDAYEQCLKI 298 (788)
Q Consensus 265 ~p~~~~~~~~la~~~~~----~g~~~eA~~~~~~al~l 298 (788)
.++.+++++|.+|.. .+++++|+.+|+++.+.
T Consensus 361 --~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~ 396 (490)
T 2xm6_A 361 --GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQ 396 (490)
T ss_dssp --TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred --CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhC
Confidence 345555556666555 55566666666665554
No 44
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.89 E-value=6.3e-22 Score=205.14 Aligned_cols=247 Identities=17% Similarity=0.149 Sum_probs=208.7
Q ss_pred HHHcCChHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHH
Q 003891 34 LKLAGNTQDGIQKYYEALKID----PHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLE 109 (788)
Q Consensus 34 ~~~~g~~~~A~~~~~~al~~~----p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g~~~ 109 (788)
+...|++++|+..|+++++.. |.++.+++.+|.++...|++++|+..|+++++.+|.+..++..+|.++...|+++
T Consensus 15 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~ 94 (275)
T 1xnf_A 15 LQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFD 94 (275)
T ss_dssp CCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHH
T ss_pred cCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHH
Confidence 345688999999999999873 4568899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHH
Q 003891 110 SAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVF 189 (788)
Q Consensus 110 ~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 189 (788)
+|+.+|+++++++|++...+..+ |.++...|++++|+.+++++++.+|++......++.. ...|++++|+..
T Consensus 95 ~A~~~~~~al~~~~~~~~~~~~l-------a~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~~A~~~ 166 (275)
T 1xnf_A 95 AAYEAFDSVLELDPTYNYAHLNR-------GIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLA-EQKLDEKQAKEV 166 (275)
T ss_dssp HHHHHHHHHHHHCTTCTHHHHHH-------HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH-HHHHCHHHHHHH
T ss_pred HHHHHHHHHHhcCccccHHHHHH-------HHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHH-HHhcCHHHHHHH
Confidence 99999999999999987655554 4455556799999999999999999998766666544 666999999999
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 003891 190 YELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNF----SQSLNNLGVVYTVQGKMDAAAEMIEKAIAAN 265 (788)
Q Consensus 190 ~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~eA~~~l~kal~~~ 265 (788)
+++++...|.+...+. ++.++...++.++|+..++++++..|.. ..++..+|.++...|++++|+.+|+++++.+
T Consensus 167 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 245 (275)
T 1xnf_A 167 LKQHFEKSDKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN 245 (275)
T ss_dssp HHHHHHHSCCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHhcCCcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Confidence 9999999888765544 7777888889999999999998876643 6788999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 003891 266 PTYAEAYNNLGVLYRDAGSISLAIDAY 292 (788)
Q Consensus 266 p~~~~~~~~la~~~~~~g~~~eA~~~~ 292 (788)
|++... .+.++..+|++++|++.|
T Consensus 246 p~~~~~---~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 246 VHNFVE---HRYALLELSLLGQDQDDL 269 (275)
T ss_dssp CTTCHH---HHHHHHHHHHHHHC----
T ss_pred chhHHH---HHHHHHHHHHHHhhHHHH
Confidence 876443 377888889999998877
No 45
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.88 E-value=1.3e-19 Score=205.36 Aligned_cols=284 Identities=21% Similarity=0.206 Sum_probs=216.6
Q ss_pred HHHHHHHHHHcCCCChhhHHHHHHHHHHHHHHHHH----cCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCC
Q 003891 2 LVASYHKALSADPSYKPAAECLAIVLTDLGTSLKL----AGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSE----LMQ 73 (788)
Q Consensus 2 Ai~~~~kaL~~~P~~~~a~~~la~~l~~lg~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~----~g~ 73 (788)
|+++|+++.+. +++.+ ++.+|.++.. .+++++|+.+|+++.+. .++.+++.+|.+|.. .++
T Consensus 98 A~~~~~~a~~~--~~~~a-------~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~d 166 (490)
T 2xm6_A 98 AVIWYKKAALK--GLPQA-------QQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ--GRDSGQQSMGDAYFEGDGVTRD 166 (490)
T ss_dssp HHHHHHHHHHT--TCHHH-------HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCC
T ss_pred HHHHHHHHHHC--CCHHH-------HHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCC
Confidence 56777777664 34444 4455555555 56677777777766554 456666666666666 566
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHhhCCCcHHHHHHHHH---------------
Q 003891 74 YDTALGCYEKAALERPMYAEAYCNMGVIYKN----RGDLESAIACYERCLAVSPNFEIAKNNMAI--------------- 134 (788)
Q Consensus 74 ~~~A~~~~~kal~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~--------------- 134 (788)
+++|+.+|+++++. .++.+++.+|.+|.. .+++++|+++|+++.+.. +..+...++.
T Consensus 167 ~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~y~~g~g~~~~~~~A 242 (490)
T 2xm6_A 167 YVMAREWYSKAAEQ--GNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG--DELGQLHLADMYYFGIGVTQDYTQS 242 (490)
T ss_dssp HHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHH
T ss_pred HHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHcCCCCCCCHHHH
Confidence 66666666666654 356666666666666 566666666666665542 2223333332
Q ss_pred --------------HHHHhhhhhhh----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-----CChHHHHHHHH
Q 003891 135 --------------ALTDLGTKVKL----EGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEM-----LKFDMAIVFYE 191 (788)
Q Consensus 135 --------------~l~~lg~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-----g~~~~A~~~~~ 191 (788)
++..+|.++.. .+++++|+.+|+++.+. .++.+++.+|.+|... +++++|+.+|+
T Consensus 243 ~~~~~~a~~~~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~ 320 (490)
T 2xm6_A 243 RVLFSQSAEQGNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQ--GNSDGQYYLAHLYDKGAEGVAKNREQAISWYT 320 (490)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTT--TCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHH
Confidence 23345666666 78999999999999865 6789999999999998 99999999999
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHh
Q 003891 192 LAFHFNPHCAEACNNLGVIYKDRD---NLDKAVECYQMALSIKPNFSQSLNNLGVVYTV----QGKMDAAAEMIEKAIAA 264 (788)
Q Consensus 192 ~al~~~p~~~~~~~~la~~~~~~g---~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~eA~~~l~kal~~ 264 (788)
++.+. .+..+++++|.+|...| ++++|+.+|+++++. .++.+++++|.+|.. .+++++|+++|+++.+.
T Consensus 321 ~a~~~--~~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~ 396 (490)
T 2xm6_A 321 KSAEQ--GDATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK--GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQ 396 (490)
T ss_dssp HHHHT--TCHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred HHHhc--CCHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhC
Confidence 99986 46789999999999877 899999999999987 679999999999999 89999999999999986
Q ss_pred CCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCC---ChhhHHh
Q 003891 265 NPTYAEAYNNLGVLYRD----AGSISLAIDAYEQCLKIDPD---SRNAGQN 308 (788)
Q Consensus 265 ~p~~~~~~~~la~~~~~----~g~~~eA~~~~~~al~l~p~---~~~a~~~ 308 (788)
. ++.+++++|.+|.. .+++++|..+|+++++.+|+ +..+..+
T Consensus 397 ~--~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~ 445 (490)
T 2xm6_A 397 G--LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMNLFGTENRNIT 445 (490)
T ss_dssp T--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred C--CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCCCcCCHHHHHH
Confidence 4 68999999999999 89999999999999999955 5555443
No 46
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.88 E-value=2.4e-20 Score=193.97 Aligned_cols=227 Identities=21% Similarity=0.287 Sum_probs=206.1
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 003891 27 LTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSE----LMQYDTALGCYEKAALERPMYAEAYCNMGVIY 102 (788)
Q Consensus 27 l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~----~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~ 102 (788)
++.+|..+...|++++|+.+|+++++ |++..+++.+|.++.. .+++++|+.+|+++++.+ ++.+++.+|.+|
T Consensus 9 ~~~lg~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~ 84 (273)
T 1ouv_A 9 LVGLGAKSYKEKDFTQAKKYFEKACD--LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGCHLLGNLY 84 (273)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHH
Confidence 78888889999999999999999998 7889999999999999 999999999999999985 799999999999
Q ss_pred HH----CCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhh----cCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 003891 103 KN----RGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKL----EGDINQGVAYYKKALYYNWHYADAMYNLG 174 (788)
Q Consensus 103 ~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la 174 (788)
.. .+++++|+.+|+++++.. +.. ++..+|.++.. .+++++|+.+|+++++.. +..++..+|
T Consensus 85 ~~g~~~~~~~~~A~~~~~~a~~~~--~~~-------a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg 153 (273)
T 1ouv_A 85 YSGQGVSQNTNKALQYYSKACDLK--YAE-------GCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN--DGDGCTILG 153 (273)
T ss_dssp HHTSSSCCCHHHHHHHHHHHHHTT--CHH-------HHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHH
T ss_pred hCCCCcccCHHHHHHHHHHHHHcC--Ccc-------HHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC--cHHHHHHHH
Confidence 99 999999999999999874 444 44555666666 789999999999999976 688999999
Q ss_pred HHHHH----cCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 003891 175 VAYGE----MLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKD----RDNLDKAVECYQMALSIKPNFSQSLNNLGVVYT 246 (788)
Q Consensus 175 ~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~ 246 (788)
.+|.. .+++++|+.+|+++++. .+..++..+|.+|.. .+++++|+.+|+++++..+ +.++..+|.+|.
T Consensus 154 ~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~ 229 (273)
T 1ouv_A 154 SLYDAGRGTPKDLKKALASYDKACDL--KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN--GGGCFNLGAMQY 229 (273)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHH
T ss_pred HHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC--HHHHHHHHHHHH
Confidence 99999 99999999999999987 468999999999999 9999999999999999865 889999999999
Q ss_pred H----cCCHHHHHHHHHHHHHhCCCCHHHH
Q 003891 247 V----QGKMDAAAEMIEKAIAANPTYAEAY 272 (788)
Q Consensus 247 ~----~g~~~eA~~~l~kal~~~p~~~~~~ 272 (788)
. .+++++|+++|+++++..|+++..+
T Consensus 230 ~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~ 259 (273)
T 1ouv_A 230 NGEGVTRNEKQAIENFKKGCKLGAKGACDI 259 (273)
T ss_dssp TTSSSSCCSTTHHHHHHHHHHHTCHHHHHH
T ss_pred cCCCcccCHHHHHHHHHHHHHcCCHHHHHH
Confidence 9 9999999999999999988754433
No 47
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.88 E-value=3.3e-21 Score=187.60 Aligned_cols=171 Identities=25% Similarity=0.383 Sum_probs=165.6
Q ss_pred HHHHHHhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 003891 133 AIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYK 212 (788)
Q Consensus 133 a~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 212 (788)
+.+|..+|.++..+|++++|++.|+++++.+|++..++..+|.++...|++++|+..+++++...|++..++..+|.++.
T Consensus 5 ~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (184)
T 3vtx_A 5 TTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSANF 84 (184)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHH
Confidence 35677788888889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 003891 213 DRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAY 292 (788)
Q Consensus 213 ~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~~eA~~~~ 292 (788)
..+++++|...++++++..|.+..++..+|.++..+|++++|++.|+++++++|+++.+++++|.+|..+|++++|+++|
T Consensus 85 ~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 164 (184)
T 3vtx_A 85 MIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAVKYF 164 (184)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhCCCCh
Q 003891 293 EQCLKIDPDSR 303 (788)
Q Consensus 293 ~~al~l~p~~~ 303 (788)
+++++++|++.
T Consensus 165 ~~al~~~p~~a 175 (184)
T 3vtx_A 165 KKALEKEEKKA 175 (184)
T ss_dssp HHHHHTTHHHH
T ss_pred HHHHhCCccCH
Confidence 99999999764
No 48
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.88 E-value=1e-20 Score=193.67 Aligned_cols=208 Identities=18% Similarity=0.141 Sum_probs=135.1
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 003891 92 AEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMY 171 (788)
Q Consensus 92 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 171 (788)
+.++..+|.++...|++++|+.+|+++++..|++...+.. +|.++...|++++|+++++++++.+|.+..++.
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~-------la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~ 109 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAA-------LAVVFQTEMEPKLADEEYRKALASDSRNARVLN 109 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHH-------HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHH-------HHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHH
Confidence 3444445555555555555555555555554444332222 222223334555555555555555555556666
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC
Q 003891 172 NLGVAYGEMLKFDMAIVFYELAFH--FNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQG 249 (788)
Q Consensus 172 ~la~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g 249 (788)
.+|.++...|++++|+++++++++ ..|.+..++..+|.++...|++++|+.+++++++..|.+..++..+|.++...|
T Consensus 110 ~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g 189 (252)
T 2ho1_A 110 NYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKER 189 (252)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcC
Confidence 666666677777777777777766 566667777777777777777777777777777777777777777777777777
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhhH
Q 003891 250 KMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAG 306 (788)
Q Consensus 250 ~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~a~ 306 (788)
++++|+.+++++++..|++...+..++.++...|++++|.+++++++++.|++..+.
T Consensus 190 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 246 (252)
T 2ho1_A 190 EYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEYQ 246 (252)
T ss_dssp CHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSHHHH
T ss_pred CHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHH
Confidence 777777777777777777777777777777777777777777777777777766553
No 49
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.88 E-value=2.9e-22 Score=221.17 Aligned_cols=262 Identities=21% Similarity=0.285 Sum_probs=229.4
Q ss_pred HHHHHHHHHHcCCCChhhHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHcCCHH
Q 003891 2 LVASYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKI------DPHYAPAYYNLGVVYSELMQYD 75 (788)
Q Consensus 2 Ai~~~~kaL~~~P~~~~a~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~lg~~~~~~g~~~ 75 (788)
|+..|+++++..|++... .+.++..+|.++...|++++|+.+|+++++. .+....++..+|.+|...|+++
T Consensus 67 A~~~~~~al~~~~~~~~~---~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 143 (411)
T 4a1s_A 67 GVAFFQAAIQAGTEDLRT---LSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFD 143 (411)
T ss_dssp HHHHHHHHHHHCCSCHHH---HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHhcccChhH---HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCHH
Confidence 789999999999997653 5667899999999999999999999999988 5667889999999999999999
Q ss_pred HHHHHHHHHHHh------CCCCHHHHHHHHHHHHHCCC-----------------HHHHHHHHHHHHhhCCCcHHHHHHH
Q 003891 76 TALGCYEKAALE------RPMYAEAYCNMGVIYKNRGD-----------------LESAIACYERCLAVSPNFEIAKNNM 132 (788)
Q Consensus 76 ~A~~~~~kal~~------~p~~~~~~~~la~~~~~~g~-----------------~~~A~~~~~~al~~~p~~~~~~~~l 132 (788)
+|+.+++++++. .+....++..+|.+|...|+ +++|+.++++++++.+... .....
T Consensus 144 ~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~-~~~~~ 222 (411)
T 4a1s_A 144 EAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLG-DRGAQ 222 (411)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHT-CHHHH
T ss_pred HHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcC-CHHHH
Confidence 999999999987 45567899999999999999 9999999999988754321 11334
Q ss_pred HHHHHHhhhhhhhcCCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC------
Q 003891 133 AIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYA------DAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHC------ 200 (788)
Q Consensus 133 a~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~------~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------ 200 (788)
+.++..+|.++...|++++|+.+++++++..+... .++..+|.++...|++++|+..+++++...+..
T Consensus 223 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 302 (411)
T 4a1s_A 223 GRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVE 302 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 66788889999999999999999999998876433 388999999999999999999999999886643
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 003891 201 AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNF------SQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPT 267 (788)
Q Consensus 201 ~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~ 267 (788)
..++..+|.++...|++++|+.+++++++..+.. ..++..+|.+|...|++++|+.++++++++.+.
T Consensus 303 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 375 (411)
T 4a1s_A 303 AQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLAXX 375 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhh
Confidence 6789999999999999999999999999875432 458899999999999999999999999998765
No 50
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.88 E-value=1.2e-20 Score=193.23 Aligned_cols=209 Identities=18% Similarity=0.096 Sum_probs=140.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHH
Q 003891 58 APAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALT 137 (788)
Q Consensus 58 ~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~ 137 (788)
+.+++.+|.++...|++++|+.+|+++++.+|.+..++..+|.++...|++++|++.++++++..|.+...+..+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l----- 111 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNY----- 111 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH-----
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHH-----
Confidence 455666666666666666666666666666666666666666666666666666666666666666554333333
Q ss_pred HhhhhhhhcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC
Q 003891 138 DLGTKVKLEGDINQGVAYYKKALY--YNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRD 215 (788)
Q Consensus 138 ~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 215 (788)
+.++...|++++|+++++++++ ..|.+..++..+|.++...|++++|+..++++++..|.+..++..+|.++...|
T Consensus 112 --a~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g 189 (252)
T 2ho1_A 112 --GGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKER 189 (252)
T ss_dssp --HHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTT
T ss_pred --HHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcC
Confidence 3333334566666666666666 556666667777777777777777777777777777777777777777777777
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 003891 216 NLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYN 273 (788)
Q Consensus 216 ~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~ 273 (788)
++++|+.+++++++..|.+...+..++.++...|++++|..+++++++..|+++....
T Consensus 190 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 247 (252)
T 2ho1_A 190 EYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEYQE 247 (252)
T ss_dssp CHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSHHHHH
T ss_pred CHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHHH
Confidence 7777777777777777777777777777777777777777777777777777766544
No 51
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.88 E-value=2.9e-20 Score=186.05 Aligned_cols=211 Identities=16% Similarity=0.105 Sum_probs=134.7
Q ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHhCCCCHH
Q 003891 89 PMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYAD 168 (788)
Q Consensus 89 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~ 168 (788)
|.++.++..+|.++...|++++|++.++++++..|++...+.. +|.++...|++++|+.+++++++.+|.+..
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~-------l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~ 77 (225)
T 2vq2_A 5 NQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLV-------RAEIYQYLKVNDKAQESFRQALSIKPDSAE 77 (225)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH-------HHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHH-------HHHHHHHcCChHHHHHHHHHHHHhCCCChH
Confidence 3334444444444555555555555555554444444332222 222223334555555555555555555555
Q ss_pred HHHHHHHHHHHc-CChHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 003891 169 AMYNLGVAYGEM-LKFDMAIVFYELAFH--FNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVY 245 (788)
Q Consensus 169 ~~~~la~~~~~~-g~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~ 245 (788)
++..+|.++... |++++|+..++++++ ..|....++..+|.++...|++++|+.+++++++..|.+..++..+|.++
T Consensus 78 ~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 157 (225)
T 2vq2_A 78 INNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTK 157 (225)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHH
Confidence 566666666666 666666666666666 44555677777777777777777777777777777777777777777777
Q ss_pred HHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhhH
Q 003891 246 TVQGKMDAAAEMIEKAIAANP-TYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAG 306 (788)
Q Consensus 246 ~~~g~~~eA~~~l~kal~~~p-~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~a~ 306 (788)
...|++++|+..++++++..| .+...+..++.++...|+.++|..+++.+.+.+|++..+.
T Consensus 158 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 219 (225)
T 2vq2_A 158 MLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEELQ 219 (225)
T ss_dssp HHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHH
Confidence 777777777777777777777 7777777777777777777777777777777777776654
No 52
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.88 E-value=3.2e-20 Score=185.68 Aligned_cols=214 Identities=18% Similarity=0.114 Sum_probs=145.8
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHH
Q 003891 54 DPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMA 133 (788)
Q Consensus 54 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 133 (788)
.|+++.+++.+|.++...|++++|+..++++++.+|.+..++..+|.++...|++++|+++++++++..|++...+.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~--- 80 (225)
T 2vq2_A 4 ANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINN--- 80 (225)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH---
T ss_pred CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHH---
Confidence 44555666666666666666666666666666666666666666666666666666666666666666666544333
Q ss_pred HHHHHhhhhhhhc-CCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 003891 134 IALTDLGTKVKLE-GDINQGVAYYKKALY--YNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVI 210 (788)
Q Consensus 134 ~~l~~lg~~~~~~-g~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 210 (788)
.+|.++... |++++|+.+++++++ ..|....++..+|.++...|++++|+..++++++..|.+..++..+|.+
T Consensus 81 ----~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 156 (225)
T 2vq2_A 81 ----NYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELART 156 (225)
T ss_dssp ----HHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred ----HHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHH
Confidence 333334445 566666666666666 4455566777777777777777777777777777777777777777777
Q ss_pred HHHcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 003891 211 YKDRDNLDKAVECYQMALSIKP-NFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNN 274 (788)
Q Consensus 211 ~~~~g~~~eA~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~ 274 (788)
+...|++++|+.+++++++..| .+...+..++.++...|++++|..+++.+.+.+|+++.+...
T Consensus 157 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~ 221 (225)
T 2vq2_A 157 KMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEELQTV 221 (225)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 7777777777777777777777 777777777777777777777777777777777777665543
No 53
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.87 E-value=1.6e-20 Score=194.46 Aligned_cols=242 Identities=15% Similarity=0.095 Sum_probs=209.9
Q ss_pred HHHHHHHHHHcCCCChhhHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 003891 2 LVASYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCY 81 (788)
Q Consensus 2 Ai~~~~kaL~~~P~~~~a~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 81 (788)
|++.|+++++..+.+.. ..+.+++.+|.++...|++++|+..|+++++.+|++..++..+|.++...|++++|+.+|
T Consensus 24 A~~~~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 100 (275)
T 1xnf_A 24 ILARMEQILASRALTDD---ERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAF 100 (275)
T ss_dssp HHHHHHHHHTSSCCCHH---HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHhcccccCc---hhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHHHHHH
Confidence 78899999998664432 346678999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHH
Q 003891 82 EKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALY 161 (788)
Q Consensus 82 ~kal~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~ 161 (788)
+++++.+|.+..++..+|.++...|++++|+.+|++++++.|++......... ....|++++|+..+++++.
T Consensus 101 ~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~--------~~~~~~~~~A~~~~~~~~~ 172 (275)
T 1xnf_A 101 DSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYL--------AEQKLDEKQAKEVLKQHFE 172 (275)
T ss_dssp HHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH--------HHHHHCHHHHHHHHHHHHH
T ss_pred HHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHH--------HHHhcCHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999998754433221 1335799999999999999
Q ss_pred hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH
Q 003891 162 YNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPH----CAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQS 237 (788)
Q Consensus 162 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~ 237 (788)
..|.+...+. ++.++...++.++|+..+++++...|. +..++..+|.++...|++++|+.+|+++++.+|++...
T Consensus 173 ~~~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 251 (275)
T 1xnf_A 173 KSDKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVE 251 (275)
T ss_dssp HSCCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHH
T ss_pred cCCcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHHH
Confidence 9988766554 777888899999999999999987764 37899999999999999999999999999999977443
Q ss_pred HHHHHHHHHHcCCHHHHHHHH
Q 003891 238 LNNLGVVYTVQGKMDAAAEMI 258 (788)
Q Consensus 238 ~~~la~~~~~~g~~~eA~~~l 258 (788)
.+.++...|++++|++.+
T Consensus 252 ---~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 252 ---HRYALLELSLLGQDQDDL 269 (275)
T ss_dssp ---HHHHHHHHHHHHHC----
T ss_pred ---HHHHHHHHHHHHhhHHHH
Confidence 477888999999999887
No 54
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.87 E-value=1.3e-19 Score=207.61 Aligned_cols=312 Identities=13% Similarity=0.039 Sum_probs=244.2
Q ss_pred HHHHHHcCCCChhhHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003891 6 YHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAA 85 (788)
Q Consensus 6 ~~kaL~~~P~~~~a~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal 85 (788)
++++|+.+|.+..+|..++ . +...|++++|...|+++++..|.+...|..++..+...|++++|...|++++
T Consensus 2 le~al~~~P~~~~~w~~l~-------~-~~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral 73 (530)
T 2ooe_A 2 AEKKLEENPYDLDAWSILI-------R-EAQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCL 73 (530)
T ss_dssp HHHHHHHCTTCHHHHHHHH-------H-HHHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred hhhHhhhCCCCHHHHHHHH-------H-HHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 7899999999998855444 3 2457999999999999999999999999999999999999999999999999
Q ss_pred HhCCCCHHHHHHHHHH------------------------------------------HHH---------CCCHHHHHHH
Q 003891 86 LERPMYAEAYCNMGVI------------------------------------------YKN---------RGDLESAIAC 114 (788)
Q Consensus 86 ~~~p~~~~~~~~la~~------------------------------------------~~~---------~g~~~~A~~~ 114 (788)
...| +...|..++.. ... .|++++|...
T Consensus 74 ~~~p-~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 152 (530)
T 2ooe_A 74 MKVL-HIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRV 152 (530)
T ss_dssp TTCC-CHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHH
T ss_pred hcCC-ChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHH
Confidence 9988 45555544421 111 4567777788
Q ss_pred HHHHHhhCCCcH--HHHHHHHHHHH---------------------------------Hhh------------------h
Q 003891 115 YERCLAVSPNFE--IAKNNMAIALT---------------------------------DLG------------------T 141 (788)
Q Consensus 115 ~~~al~~~p~~~--~~~~~la~~l~---------------------------------~lg------------------~ 141 (788)
|+++++ .|... ..+........ .+. .
T Consensus 153 y~~al~-~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~ 231 (530)
T 2ooe_A 153 YQRGCV-NPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVD 231 (530)
T ss_dssp HHHHTT-SCCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHH
T ss_pred HHHHHh-chhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHH
Confidence 888877 45432 11111111000 000 0
Q ss_pred hh-----hh------cCC----HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-------cCChH-------HHHHHHHH
Q 003891 142 KV-----KL------EGD----INQGVAYYKKALYYNWHYADAMYNLGVAYGE-------MLKFD-------MAIVFYEL 192 (788)
Q Consensus 142 ~~-----~~------~g~----~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-------~g~~~-------~A~~~~~~ 192 (788)
.+ .. .++ .++++..|++++..+|.++.+|+.+|..+.. .|+++ +|+..|++
T Consensus 232 ~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~ 311 (530)
T 2ooe_A 232 MWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYER 311 (530)
T ss_dssp HHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHH
Confidence 00 00 011 1367789999999999999999999999886 79987 89999999
Q ss_pred HHh-cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 003891 193 AFH-FNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFS-QSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAE 270 (788)
Q Consensus 193 al~-~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~-~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~ 270 (788)
+++ ..|++..+|..++.++...|++++|...|+++++..|.++ .+|..++.++...|++++|.+.|+++++..|....
T Consensus 312 Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~ 391 (530)
T 2ooe_A 312 AISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHH 391 (530)
T ss_dssp HTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTH
T ss_pred HHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchH
Confidence 997 7999999999999999999999999999999999999885 68999999999999999999999999999888777
Q ss_pred HHHHHHHH-HHHcCCHHHHHHHHHHHHhhCCCChhhHHhHHHHhhhccCCCchHHHHHHH
Q 003891 271 AYNNLGVL-YRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHR 329 (788)
Q Consensus 271 ~~~~la~~-~~~~g~~~eA~~~~~~al~l~p~~~~a~~~~lla~~~l~~g~~~~~~~~~~ 329 (788)
.+...+.+ +...|++++|...|+++++..|++..++.+ ++..+...|+.+++...++
T Consensus 392 ~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~--~~~~~~~~g~~~~Ar~~~~ 449 (530)
T 2ooe_A 392 VYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLA--YIDYLSHLNEDNNTRVLFE 449 (530)
T ss_dssp HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHH--HHHHHTTTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHH--HHHHHHhCCCHhhHHHHHH
Confidence 77766665 346899999999999999999999888765 3445566777776655444
No 55
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.87 E-value=2.6e-21 Score=218.23 Aligned_cols=230 Identities=20% Similarity=0.249 Sum_probs=168.6
Q ss_pred ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Q 003891 39 NTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQY-DTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYER 117 (788)
Q Consensus 39 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~-~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 117 (788)
++++++..+++.....|.++.+++.+|.++...|++ ++|+.+|+++++.+|++..++..+|.+|...|++++|+.+|++
T Consensus 83 ~~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~ 162 (474)
T 4abn_A 83 EMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSG 162 (474)
T ss_dssp HHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 367788888888888999999999999999999999 9999999999999999999999999999999999999999999
Q ss_pred HHhhCCCcHHHHHHHHHHHHHh--hhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 003891 118 CLAVSPNFEIAKNNMAIALTDL--GTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFH 195 (788)
Q Consensus 118 al~~~p~~~~~~~~la~~l~~l--g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 195 (788)
+++++|+ ...+..++.++..+ +......|++++|+.+|+++++++|++..++..+|.+|... +|
T Consensus 163 al~~~p~-~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~--------~~----- 228 (474)
T 4abn_A 163 ALTHCKN-KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSL--------YF----- 228 (474)
T ss_dssp HHTTCCC-HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH--------HH-----
T ss_pred HHhhCCC-HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH--------HH-----
Confidence 9999998 45555555554443 11111115566666666666666665555555555555544 00
Q ss_pred cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 003891 196 FNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKP---NFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAY 272 (788)
Q Consensus 196 ~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p---~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~ 272 (788)
..+. ..|++++|+.+|+++++++| +++.++.++|.+|...|++++|++.|+++++++|++..++
T Consensus 229 ----------~~~~---~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~ 295 (474)
T 4abn_A 229 ----------NTGQ---NPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQ 295 (474)
T ss_dssp ----------HTTC---CHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred ----------hhcc---ccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 0000 00556666666666666666 6677777777777777777777777777777777777777
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHH
Q 003891 273 NNLGVLYRDAGSISLAIDAYEQC 295 (788)
Q Consensus 273 ~~la~~~~~~g~~~eA~~~~~~a 295 (788)
..++.++..+|++++|++.+.+.
T Consensus 296 ~~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 296 QREQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHHHHHHHhccc
Confidence 77777777777777777766554
No 56
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.87 E-value=1.1e-21 Score=208.65 Aligned_cols=262 Identities=23% Similarity=0.328 Sum_probs=223.3
Q ss_pred HHHHHHHHHHcCCCChhhHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHcCCHH
Q 003891 2 LVASYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKI------DPHYAPAYYNLGVVYSELMQYD 75 (788)
Q Consensus 2 Ai~~~~kaL~~~P~~~~a~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~lg~~~~~~g~~~ 75 (788)
|+..|+++++..|++... .+.++..+|.++...|++++|+..++++++. .+....++..+|.++...|+++
T Consensus 24 A~~~~~~al~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 100 (338)
T 3ro2_A 24 GVSFFEAAVQVGTEDLKT---LSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFD 100 (338)
T ss_dssp HHHHHHHHHHHCCSCHHH---HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHhhCcccHHH---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHccCHH
Confidence 789999999999987654 5667899999999999999999999999887 4445788999999999999999
Q ss_pred HHHHHHHHHHHhCCCC------HHHHHHHHHHHHHCCC--------------------HHHHHHHHHHHHhhCCCcHHHH
Q 003891 76 TALGCYEKAALERPMY------AEAYCNMGVIYKNRGD--------------------LESAIACYERCLAVSPNFEIAK 129 (788)
Q Consensus 76 ~A~~~~~kal~~~p~~------~~~~~~la~~~~~~g~--------------------~~~A~~~~~~al~~~p~~~~~~ 129 (788)
+|+..++++++..+.. ..++..+|.++...|+ +++|+.++++++++.+... ..
T Consensus 101 ~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~-~~ 179 (338)
T 3ro2_A 101 EAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALG-DR 179 (338)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHT-CH
T ss_pred HHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcC-CH
Confidence 9999999999875433 4589999999999999 9999999999987643221 12
Q ss_pred HHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC---
Q 003891 130 NNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHY------ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHC--- 200 (788)
Q Consensus 130 ~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--- 200 (788)
...+.++..+|.++...|++++|+.+++++++..+.. ..++..+|.++...|++++|+..+++++...+..
T Consensus 180 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 259 (338)
T 3ro2_A 180 AAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDR 259 (338)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcch
Confidence 2346678888999999999999999999999875442 2388999999999999999999999999876554
Q ss_pred ---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 003891 201 ---AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNF------SQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPT 267 (788)
Q Consensus 201 ---~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~ 267 (788)
..++..+|.++...|++++|+.+++++++..+.. ..++..+|.++...|++++|..++++++++.+.
T Consensus 260 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 335 (338)
T 3ro2_A 260 AVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 335 (338)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC---
T ss_pred hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Confidence 6788999999999999999999999999875432 458889999999999999999999999998765
No 57
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.87 E-value=2e-20 Score=182.04 Aligned_cols=170 Identities=23% Similarity=0.341 Sum_probs=88.5
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Q 003891 57 YAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIAL 136 (788)
Q Consensus 57 ~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l 136 (788)
++.+|+++|.+|..+|++++|+..|+++++.+|+++.++..+|.+|...|++++|+..+++++...|+....+..++.
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~-- 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGS-- 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHH--
Confidence 345555555555555555555555555555555555555555555555555555555555555555554433322222
Q ss_pred HHhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC
Q 003891 137 TDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDN 216 (788)
Q Consensus 137 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 216 (788)
.+...+++++|...+.++++.+|++..++..+|.++..+|++++|++.|+++++.+|.+..++.++|.+|..+|+
T Consensus 82 -----~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~ 156 (184)
T 3vtx_A 82 -----ANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGL 156 (184)
T ss_dssp -----HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred -----HHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCC
Confidence 222233445555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHHHHHHHHHHHhhCCC
Q 003891 217 LDKAVECYQMALSIKPN 233 (788)
Q Consensus 217 ~~eA~~~~~~al~~~p~ 233 (788)
+++|+.+|+++++++|+
T Consensus 157 ~~~A~~~~~~al~~~p~ 173 (184)
T 3vtx_A 157 RDEAVKYFKKALEKEEK 173 (184)
T ss_dssp HHHHHHHHHHHHHTTHH
T ss_pred HHHHHHHHHHHHhCCcc
Confidence 55555555555554443
No 58
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.87 E-value=1.3e-20 Score=200.09 Aligned_cols=228 Identities=10% Similarity=0.049 Sum_probs=188.0
Q ss_pred HHHHHHHHHHcCCCChhhHHHHHHHHHHHHHHHHHcCCh-------HHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHcCC
Q 003891 2 LVASYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNT-------QDGIQKYYEALK-IDPHYAPAYYNLGVVYSELMQ 73 (788)
Q Consensus 2 Ai~~~~kaL~~~P~~~~a~~~la~~l~~lg~~~~~~g~~-------~~A~~~~~~al~-~~p~~~~~~~~lg~~~~~~g~ 73 (788)
|+..|+++++.+|.++++|..++..+...+..+...|++ ++|+..|+++++ .+|++..+|..+|.++...|+
T Consensus 35 a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~ 114 (308)
T 2ond_A 35 VMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMK 114 (308)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCC
Confidence 568999999999999999888888877766666677886 899999999999 699999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhcCCHHHH
Q 003891 74 YDTALGCYEKAALERPMYAE-AYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQG 152 (788)
Q Consensus 74 ~~~A~~~~~kal~~~p~~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~g~~~~A 152 (788)
+++|...|+++++..|.++. +|..+|.++...|++++|+..|+++++..|.....+...+... +...|++++|
T Consensus 115 ~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~------~~~~~~~~~A 188 (308)
T 2ond_A 115 YEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALME------YYCSKDKSVA 188 (308)
T ss_dssp HHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHH------HHTSCCHHHH
T ss_pred HHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH------HHHcCCHHHH
Confidence 99999999999999999886 8999999999999999999999999999888754443222111 1125788888
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc---CC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003891 153 VAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHF---NP-HCAEACNNLGVIYKDRDNLDKAVECYQMAL 228 (788)
Q Consensus 153 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~p-~~~~~~~~la~~~~~~g~~~eA~~~~~~al 228 (788)
...|+++++.+|+++.++..++.++...|++++|+..|++++.. .| +...+|..++..+...|++++|..++++++
T Consensus 189 ~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~ 268 (308)
T 2ond_A 189 FKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRF 268 (308)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 88888888888888888888888888888888888888888875 44 356777777777777888888888888888
Q ss_pred hhCCCCH
Q 003891 229 SIKPNFS 235 (788)
Q Consensus 229 ~~~p~~~ 235 (788)
+..|++.
T Consensus 269 ~~~p~~~ 275 (308)
T 2ond_A 269 TAFREEY 275 (308)
T ss_dssp HHTTTTT
T ss_pred HHccccc
Confidence 8777654
No 59
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.87 E-value=5.3e-21 Score=215.74 Aligned_cols=211 Identities=17% Similarity=0.111 Sum_probs=178.2
Q ss_pred CHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhcCCH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHH
Q 003891 107 DLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDI-NQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDM 185 (788)
Q Consensus 107 ~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~g~~-~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 185 (788)
++++++..+++.....|.....+..++.++... |++ ++|+++|+++++.+|++..++..+|.+|...|++++
T Consensus 83 ~~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~-------g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~ 155 (474)
T 4abn_A 83 EMEKTLQQMEEVLGSAQVEAQALMLKGKALNVT-------PDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTS 155 (474)
T ss_dssp HHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSS-------SSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHHhccCchhHHHHHHHHHHHHhc-------cccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHH
Confidence 356666677777777777777777777776653 477 777777777777778888888888888888888888
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc--------
Q 003891 186 AIVFYELAFHFNPHCAEACNNLGVIYKDR---------DNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQ-------- 248 (788)
Q Consensus 186 A~~~~~~al~~~p~~~~~~~~la~~~~~~---------g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~-------- 248 (788)
|+.+|+++++.+|+ ..++.++|.++... |++++|+.+|+++++++|++..++.++|.+|...
T Consensus 156 A~~~~~~al~~~p~-~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~ 234 (474)
T 4abn_A 156 AHTCFSGALTHCKN-KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNP 234 (474)
T ss_dssp HHHHHHHHHTTCCC-HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCH
T ss_pred HHHHHHHHHhhCCC-HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhcccc
Confidence 88888888888888 68888899998888 9999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhhHHhHHHHhhhccCCCchHHH
Q 003891 249 GKMDAAAEMIEKAIAANP---TYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLF 325 (788)
Q Consensus 249 g~~~eA~~~l~kal~~~p---~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~a~~~~lla~~~l~~g~~~~~~ 325 (788)
|++++|+.+|+++++++| +++.+++++|.+|..+|++++|++.|+++++++|++..++.++.. .+...|+.++++
T Consensus 235 g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~--~~~~lg~~~eAi 312 (474)
T 4abn_A 235 KISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQ--LLEFLSRLTSLL 312 (474)
T ss_dssp HHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH--HHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH--HHHHHHHHHHHH
Confidence 999999999999999999 999999999999999999999999999999999999988877544 344445555555
Q ss_pred HH
Q 003891 326 EA 327 (788)
Q Consensus 326 ~~ 327 (788)
+.
T Consensus 313 ~~ 314 (474)
T 4abn_A 313 ES 314 (474)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 60
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.87 E-value=1.4e-19 Score=207.35 Aligned_cols=322 Identities=10% Similarity=0.035 Sum_probs=248.2
Q ss_pred HHHHHHHHHHcCCCChhhHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHH---------------
Q 003891 2 LVASYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGV--------------- 66 (788)
Q Consensus 2 Ai~~~~kaL~~~P~~~~a~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~--------------- 66 (788)
|...|+++++.+|.+... +..++..+...|++++|+..|+++++..| +...|..++.
T Consensus 31 a~~~~e~al~~~P~~~~~-------w~~~~~~~~~~~~~~~a~~~~~ral~~~p-~~~lw~~~~~~~~~~~~~~~~a~~~ 102 (530)
T 2ooe_A 31 ARKTYERLVAQFPSSGRF-------WKLYIEAEIKAKNYDKVEKLFQRCLMKVL-HIDLWKCYLSYVRETKGKLPSYKEK 102 (530)
T ss_dssp HHHHHHHHHTTCTTCHHH-------HHHHHHHHHHTTCHHHHHHHHHHHTTTCC-CHHHHHHHHHHHHHHTTTSTTHHHH
T ss_pred HHHHHHHHHHHCCCCHHH-------HHHHHHHHHhcCCHHHHHHHHHHHHhcCC-ChHHHHHHHHHHHHHccchhhHHHH
Confidence 678999999999999887 55556666778999999999999999888 4555554442
Q ss_pred ---------------------------HHHH---------cCCHHHHHHHHHHHHHhCCCCH--HHHHHHHHH-------
Q 003891 67 ---------------------------VYSE---------LMQYDTALGCYEKAALERPMYA--EAYCNMGVI------- 101 (788)
Q Consensus 67 ---------------------------~~~~---------~g~~~~A~~~~~kal~~~p~~~--~~~~~la~~------- 101 (788)
.... .|++++|..+|+++++ .|... ..|......
T Consensus 103 ~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~-~P~~~~~~~~~~~~~~e~~~~~~ 181 (530)
T 2ooe_A 103 MAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCV-NPMINIEQLWRDYNKYEEGINIH 181 (530)
T ss_dssp HHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTT-SCCTTHHHHHHHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHh-chhhhHHHHHHHHHHHHHhhchh
Confidence 1111 4677888888888887 45431 222111110
Q ss_pred --------------------------------------------------------HHH------CCC----HHHHHHHH
Q 003891 102 --------------------------------------------------------YKN------RGD----LESAIACY 115 (788)
Q Consensus 102 --------------------------------------------------------~~~------~g~----~~~A~~~~ 115 (788)
... .++ ..+++..|
T Consensus 182 ~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y 261 (530)
T 2ooe_A 182 LAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAY 261 (530)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHH
Confidence 000 011 13567789
Q ss_pred HHHHhhCCCcHHHHHHHHHHHHHhhhhhhhcCCHH-------HHHHHHHHHHH-hCCCCHHHHHHHHHHHHHcCChHHHH
Q 003891 116 ERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDIN-------QGVAYYKKALY-YNWHYADAMYNLGVAYGEMLKFDMAI 187 (788)
Q Consensus 116 ~~al~~~p~~~~~~~~la~~l~~lg~~~~~~g~~~-------~A~~~~~~al~-~~p~~~~~~~~la~~~~~~g~~~~A~ 187 (788)
++++..+|.++..|..++..+..........|+++ +|+..|+++++ ..|++..++..++.++...|++++|.
T Consensus 262 ~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~ 341 (530)
T 2ooe_A 262 EQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVH 341 (530)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHH
Confidence 99999999988888887777665322222357876 99999999997 89999999999999999999999999
Q ss_pred HHHHHHHhcCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH-HHHcCCHHHHHHHHHHHHHhC
Q 003891 188 VFYELAFHFNPHCA-EACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVV-YTVQGKMDAAAEMIEKAIAAN 265 (788)
Q Consensus 188 ~~~~~al~~~p~~~-~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~-~~~~g~~~eA~~~l~kal~~~ 265 (788)
..|+++++..|.+. .+|..++.++.+.|++++|+..|+++++..|.....+...+.+ +...|++++|..+|+++++..
T Consensus 342 ~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~ 421 (530)
T 2ooe_A 342 SIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY 421 (530)
T ss_dssp HHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC
Confidence 99999999999985 6999999999999999999999999999998887777776665 446999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChh----hHHhHHHHhhhccCCCchHHHHHHHHHHHH
Q 003891 266 PTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRN----AGQNRLLAMNYINEGHDDKLFEAHRDWGKR 334 (788)
Q Consensus 266 p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~----a~~~~lla~~~l~~g~~~~~~~~~~~~~~~ 334 (788)
|+++.+|..++.++...|+.++|...|+++++..|.++. .+.. +.......|+.+.+....++..+.
T Consensus 422 p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~--~~~~e~~~G~~~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 422 GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWAR--FLAFESNIGDLASILKVEKRRFTA 492 (530)
T ss_dssp TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHH--HHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHH--HHHHHHHcCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999877654 3322 122233457777665555444433
No 61
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.86 E-value=3.3e-21 Score=211.14 Aligned_cols=241 Identities=13% Similarity=0.131 Sum_probs=207.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHH
Q 003891 60 AYYNLGVVYSELMQYDTALGCYEKAALE---RPM---YAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMA 133 (788)
Q Consensus 60 ~~~~lg~~~~~~g~~~~A~~~~~kal~~---~p~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 133 (788)
.++.+|..+...|++++|+.+|+++++. .++ .+.++..+|.+|...|++++|+.++++++++.+.........+
T Consensus 105 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 184 (383)
T 3ulq_A 105 FNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLL 184 (383)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHH
Confidence 3455999999999999999999999986 222 4689999999999999999999999999998776543344567
Q ss_pred HHHHHhhhhhhhcCCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHcCChHHHHHHHHHHHh-----cC-CCCH
Q 003891 134 IALTDLGTKVKLEGDINQGVAYYKKALYYNWHYA------DAMYNLGVAYGEMLKFDMAIVFYELAFH-----FN-PHCA 201 (788)
Q Consensus 134 ~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~------~~~~~la~~~~~~g~~~~A~~~~~~al~-----~~-p~~~ 201 (788)
.++..+|.++...|++++|+.+|+++++..+... .++.++|.+|..+|++++|+.+++++++ .+ |...
T Consensus 185 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 264 (383)
T 3ulq_A 185 QCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLP 264 (383)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHH
Confidence 8899999999999999999999999998755332 4899999999999999999999999999 45 7778
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-----CCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCCCHHHHH
Q 003891 202 EACNNLGVIYKDRDNLDKAVECYQMALSIK-----PNFSQSLNNLGVVYTVQGK---MDAAAEMIEKAIAANPTYAEAYN 273 (788)
Q Consensus 202 ~~~~~la~~~~~~g~~~eA~~~~~~al~~~-----p~~~~~~~~la~~~~~~g~---~~eA~~~l~kal~~~p~~~~~~~ 273 (788)
.++.++|.++..+|++++|+.++++++++. +.....+..+|.++...|+ +++|+.++++. ...+....++.
T Consensus 265 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~ 343 (383)
T 3ulq_A 265 QAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADLEDFAI 343 (383)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHHHHHHHH
Confidence 999999999999999999999999999874 3333346779999999999 88888888876 33344567889
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 003891 274 NLGVLYRDAGSISLAIDAYEQCLKIDPD 301 (788)
Q Consensus 274 ~la~~~~~~g~~~eA~~~~~~al~l~p~ 301 (788)
.+|.+|..+|++++|.++|++++++...
T Consensus 344 ~la~~y~~~g~~~~A~~~~~~al~~~~~ 371 (383)
T 3ulq_A 344 DVAKYYHERKNFQKASAYFLKVEQVRQL 371 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999987654
No 62
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.86 E-value=9e-20 Score=184.08 Aligned_cols=212 Identities=23% Similarity=0.244 Sum_probs=167.0
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 003891 26 VLTDLGTSLKLAGNTQDGIQKYYEALKIDP-HYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKN 104 (788)
Q Consensus 26 ~l~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~ 104 (788)
.++.+|..++..|++++|+..|+++++.+| .+..+++.+|.++...|++++|+..|+++++.+|++..++..+|.+|..
T Consensus 9 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 88 (228)
T 4i17_A 9 QLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAAYRD 88 (228)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHHHHH
Confidence 488899999999999999999999999999 8999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCC
Q 003891 105 RGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWH--YADAMYNLGVAYGEMLK 182 (788)
Q Consensus 105 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~ 182 (788)
+|++++|+..|+++++++|++......++.++..+|.++...|++++|+..|+++++.+|+ +..++..+|.++...|
T Consensus 89 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~- 167 (228)
T 4i17_A 89 MKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVLFYNNG- 167 (228)
T ss_dssp TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHH-
T ss_pred cccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHH-
Confidence 9999999999999999999999887777788888888887788888888888888888877 7777777777776543
Q ss_pred hHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 003891 183 FDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVV 244 (788)
Q Consensus 183 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~ 244 (788)
...++++..+.+.....+ .+......+.+++|+.+|+++++++|++..+...++.+
T Consensus 168 ----~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i 223 (228)
T 4i17_A 168 ----ADVLRKATPLASSNKEKY--ASEKAKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQV 223 (228)
T ss_dssp ----HHHHHHHGGGTTTCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred ----HHHHHHHHhcccCCHHHH--HHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHH
Confidence 334455555554443322 22223333445555555555555555555544444443
No 63
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.86 E-value=9.3e-20 Score=193.44 Aligned_cols=248 Identities=13% Similarity=0.058 Sum_probs=199.3
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-------cCCH-------HHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHC
Q 003891 41 QDGIQKYYEALKIDPHYAPAYYNLGVVYSE-------LMQY-------DTALGCYEKAAL-ERPMYAEAYCNMGVIYKNR 105 (788)
Q Consensus 41 ~~A~~~~~~al~~~p~~~~~~~~lg~~~~~-------~g~~-------~~A~~~~~kal~-~~p~~~~~~~~la~~~~~~ 105 (788)
++|+..|+++++.+|.++.+|+.+|..+.. .|++ ++|+..|+++++ ++|++..+|..+|.++...
T Consensus 33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~ 112 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR 112 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence 689999999999999999999999998874 5775 899999999999 6999999999999999999
Q ss_pred CCHHHHHHHHHHHHhhCCCcHH-HHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCCh
Q 003891 106 GDLESAIACYERCLAVSPNFEI-AKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGE-MLKF 183 (788)
Q Consensus 106 g~~~~A~~~~~~al~~~p~~~~-~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~g~~ 183 (788)
|++++|...|++++++.|.+.. ++..++.++ ...|++++|...|+++++..|....++...+.+... .|++
T Consensus 113 ~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~-------~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~ 185 (308)
T 2ond_A 113 MKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFA-------RRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDK 185 (308)
T ss_dssp TCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHH-------HHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCH
T ss_pred CCHHHHHHHHHHHHhccccCccHHHHHHHHHH-------HHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCH
Confidence 9999999999999999988764 454444444 445688999999999999888887777766665443 6889
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---CC-CCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 003891 184 DMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSI---KP-NFSQSLNNLGVVYTVQGKMDAAAEMIE 259 (788)
Q Consensus 184 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~---~p-~~~~~~~~la~~~~~~g~~~eA~~~l~ 259 (788)
++|+..|+++++.+|++..++..++.++...|++++|+.+|+++++. .| ....+|..++..+...|++++|...++
T Consensus 186 ~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~ 265 (308)
T 2ond_A 186 SVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEK 265 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 99999999999888888888888888888889999999999998885 44 367788888888888888888888888
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhhHH
Q 003891 260 KAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQ 307 (788)
Q Consensus 260 kal~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~a~~ 307 (788)
++++..|++..... ++.+ ....+.+.++|+++.+..
T Consensus 266 ~a~~~~p~~~~~~~-~~~~-----------~~r~~~l~~~P~~~~~ln 301 (308)
T 2ond_A 266 RRFTAFREEYEGKE-TALL-----------VDRYKFMDLYPCSASELK 301 (308)
T ss_dssp HHHHHTTTTTSSCH-HHHH-----------HTTTCBTTBCSSCHHHHH
T ss_pred HHHHHcccccccch-HHHH-----------HHHHHhcccCCCCHHHHH
Confidence 88888887543221 1111 111256778888877643
No 64
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.85 E-value=4.6e-19 Score=178.89 Aligned_cols=211 Identities=13% Similarity=0.075 Sum_probs=171.0
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHH
Q 003891 55 PHYAPAYYNLGVVYSELMQYDTALGCYEKAALERP-MYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMA 133 (788)
Q Consensus 55 p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 133 (788)
+.++..++.+|.++...|++++|+..|+++++.+| .+..+++.+|.++...|++++|+.+|+++++.+|++...+..
T Consensus 4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~-- 81 (228)
T 4i17_A 4 TTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIG-- 81 (228)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHH--
T ss_pred ccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHH--
Confidence 45679999999999999999999999999999999 899999999999999999999999999999999998765555
Q ss_pred HHHHHhhhhhhhcCCHHHHHHHHHHHHHhCCCCH-------HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC--CHHHH
Q 003891 134 IALTDLGTKVKLEGDINQGVAYYKKALYYNWHYA-------DAMYNLGVAYGEMLKFDMAIVFYELAFHFNPH--CAEAC 204 (788)
Q Consensus 134 ~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~-------~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~ 204 (788)
+|.++...|++++|+..++++++.+|++. .++..+|.++...|++++|++.|+++++.+|+ +..++
T Consensus 82 -----l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 156 (228)
T 4i17_A 82 -----KSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDAL 156 (228)
T ss_dssp -----HHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHH
T ss_pred -----HHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHH
Confidence 45555557799999999999999999998 56888888888888888888888888888888 77888
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 003891 205 NNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLY 279 (788)
Q Consensus 205 ~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~ 279 (788)
.++|.++...| ...++++..+.+.....+ .+......+.+++|+.+++++++++|++..+...++.+.
T Consensus 157 ~~l~~~~~~~~-----~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~ 224 (228)
T 4i17_A 157 YSLGVLFYNNG-----ADVLRKATPLASSNKEKY--ASEKAKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVK 224 (228)
T ss_dssp HHHHHHHHHHH-----HHHHHHHGGGTTTCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-----HHHHHHHHhcccCCHHHH--HHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHH
Confidence 88888886543 445666666666554433 233344556677777777777777777777766666554
No 65
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.84 E-value=9.9e-21 Score=199.59 Aligned_cols=244 Identities=19% Similarity=0.259 Sum_probs=194.2
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC---
Q 003891 54 DPHYAPAYYNLGVVYSELMQYDTALGCYEKAALE--------RPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVS--- 122 (788)
Q Consensus 54 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--- 122 (788)
+|....++..+|.++...|++++|+.+++++++. .|....++..+|.++...|++++|+.++++++++.
T Consensus 23 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 102 (311)
T 3nf1_A 23 IPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKT 102 (311)
T ss_dssp SCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence 4556788899999999999999999999999884 56667889999999999999999999999999874
Q ss_pred --CCcHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHcCChHHHHHHHHH
Q 003891 123 --PNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYN--------WHYADAMYNLGVAYGEMLKFDMAIVFYEL 192 (788)
Q Consensus 123 --p~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 192 (788)
++.+ ....++..+|.++...|++++|+.+++++++.. +....++..+|.++...|++++|+.++++
T Consensus 103 ~~~~~~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 178 (311)
T 3nf1_A 103 LGKDHP----AVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQR 178 (311)
T ss_dssp HCTTCH----HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred hCCCCh----HHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 2222 235677788888888999999999999999874 44567899999999999999999999999
Q ss_pred HHhc--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC---------C------HHHHHHHHHHHHHcC
Q 003891 193 AFHF--------NPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPN---------F------SQSLNNLGVVYTVQG 249 (788)
Q Consensus 193 al~~--------~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~---------~------~~~~~~la~~~~~~g 249 (788)
+++. .|....++..+|.++...|++++|+.+++++++..+. . ...+..++..+...+
T Consensus 179 a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (311)
T 3nf1_A 179 ALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGT 258 (311)
T ss_dssp HHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------C
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHH
Confidence 9988 6666789999999999999999999999999976332 1 223444555566677
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 003891 250 KMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPD 301 (788)
Q Consensus 250 ~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~ 301 (788)
.+.+|...++++....|....++..+|.+|..+|++++|+++|++++++.|+
T Consensus 259 ~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 259 SFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp CSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 7888888999999999999999999999999999999999999999998875
No 66
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.83 E-value=9.7e-20 Score=213.66 Aligned_cols=171 Identities=26% Similarity=0.307 Sum_probs=121.3
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHH
Q 003891 54 DPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMA 133 (788)
Q Consensus 54 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 133 (788)
.|+++++++++|.+|.++|++++|+.+|+++++++|++..+++++|.+|..+|++++|+++|+++++++|++..++.+++
T Consensus 5 ~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg 84 (723)
T 4gyw_A 5 CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMG 84 (723)
T ss_dssp -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 56667777777777777777777777777777777777777777777777777777777777777777777655444443
Q ss_pred HHHHHhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 003891 134 IALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKD 213 (788)
Q Consensus 134 ~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 213 (788)
.+ +..+|++++|++.|+++++++|++..++.++|.+|..+|++++|++.|+++++++|++..++.++|.++..
T Consensus 85 ~~-------l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~ 157 (723)
T 4gyw_A 85 NT-------LKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQI 157 (723)
T ss_dssp HH-------HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHH
T ss_pred HH-------HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHh
Confidence 33 33345777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred cCCHHHHHHHHHHHHhhC
Q 003891 214 RDNLDKAVECYQMALSIK 231 (788)
Q Consensus 214 ~g~~~eA~~~~~~al~~~ 231 (788)
+|++++|++.+++++++.
T Consensus 158 ~g~~~~A~~~~~kal~l~ 175 (723)
T 4gyw_A 158 VCDWTDYDERMKKLVSIV 175 (723)
T ss_dssp TTCCTTHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhC
Confidence 777777777777776654
No 67
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.83 E-value=8.3e-20 Score=199.96 Aligned_cols=239 Identities=10% Similarity=0.083 Sum_probs=204.8
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHh---CCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-------CH
Q 003891 26 VLTDLGTSLKLAGNTQDGIQKYYEALKI---DPH---YAPAYYNLGVVYSELMQYDTALGCYEKAALERPM-------YA 92 (788)
Q Consensus 26 ~l~~lg~~~~~~g~~~~A~~~~~~al~~---~p~---~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~-------~~ 92 (788)
.++.+|..+...|++++|+..|+++++. .++ .+.+++.+|.+|...|++++|+.+++++++..+. ..
T Consensus 105 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 184 (383)
T 3ulq_A 105 FNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLL 184 (383)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHH
Confidence 4566899999999999999999999987 222 5689999999999999999999999999987433 35
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHH-----hC-CCC
Q 003891 93 EAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALY-----YN-WHY 166 (788)
Q Consensus 93 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~-----~~-p~~ 166 (788)
.++..+|.+|...|++++|+.+|++++++.+... .....+.++..+|.++...|++++|+.+++++++ .+ |..
T Consensus 185 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 263 (383)
T 3ulq_A 185 QCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEK-QPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSL 263 (383)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcC-ChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhH
Confidence 6899999999999999999999999998866442 1234577888999999999999999999999999 45 777
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-----CCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhhCCCCHHHH
Q 003891 167 ADAMYNLGVAYGEMLKFDMAIVFYELAFHFN-----PHCAEACNNLGVIYKDRDN---LDKAVECYQMALSIKPNFSQSL 238 (788)
Q Consensus 167 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-----p~~~~~~~~la~~~~~~g~---~~eA~~~~~~al~~~p~~~~~~ 238 (788)
..++.++|.++...|++++|+.+++++++.. +.....+..+|.++...|+ +++|+.++++. ...+....++
T Consensus 264 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~~~ 342 (383)
T 3ulq_A 264 PQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADLEDFA 342 (383)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHHHHHHH
Confidence 8899999999999999999999999999873 3334446789999999999 88888888876 3334456688
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 003891 239 NNLGVVYTVQGKMDAAAEMIEKAIAANP 266 (788)
Q Consensus 239 ~~la~~~~~~g~~~eA~~~l~kal~~~p 266 (788)
..+|.+|...|++++|..++++++++..
T Consensus 343 ~~la~~y~~~g~~~~A~~~~~~al~~~~ 370 (383)
T 3ulq_A 343 IDVAKYYHERKNFQKASAYFLKVEQVRQ 370 (383)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999998743
No 68
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.82 E-value=4.2e-19 Score=194.08 Aligned_cols=239 Identities=15% Similarity=0.131 Sum_probs=205.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHH
Q 003891 60 AYYNLGVVYSELMQYDTALGCYEKAALERP------MYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMA 133 (788)
Q Consensus 60 ~~~~lg~~~~~~g~~~~A~~~~~kal~~~p------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 133 (788)
.++.+|..+...|++++|+.+|+++++..+ ..+.++..+|.+|...|++++|+.++++++++.+.........+
T Consensus 103 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 182 (378)
T 3q15_A 103 SLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTI 182 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHH
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHH
Confidence 677899999999999999999999998632 24678999999999999999999999999998776443233567
Q ss_pred HHHHHhhhhhhhcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCChHHHHHHHHHHHh-----cCCCCHH
Q 003891 134 IALTDLGTKVKLEGDINQGVAYYKKALYYNWH------YADAMYNLGVAYGEMLKFDMAIVFYELAFH-----FNPHCAE 202 (788)
Q Consensus 134 ~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~g~~~~A~~~~~~al~-----~~p~~~~ 202 (788)
.++..+|.++...|++++|+++|++++++.+. ...++.++|.+|...|++++|+.+++++++ .+|....
T Consensus 183 ~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 262 (378)
T 3q15_A 183 QSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPK 262 (378)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHH
Confidence 88999999999999999999999999987431 245788999999999999999999999999 6787889
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-----CCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCCCHHHHHH
Q 003891 203 ACNNLGVIYKDRDNLDKAVECYQMALSIKP-----NFSQSLNNLGVVYTVQGK---MDAAAEMIEKAIAANPTYAEAYNN 274 (788)
Q Consensus 203 ~~~~la~~~~~~g~~~eA~~~~~~al~~~p-----~~~~~~~~la~~~~~~g~---~~eA~~~l~kal~~~p~~~~~~~~ 274 (788)
++.++|.++..+|++++|+.++++++++.+ .....+..++.++...++ +.+|+.++++. ...+.....+..
T Consensus 263 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~ 341 (378)
T 3q15_A 263 VLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK-NLHAYIEACARS 341 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC-CChhHHHHHHHH
Confidence 999999999999999999999999999843 334466778888888888 88888888872 223344677889
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhC
Q 003891 275 LGVLYRDAGSISLAIDAYEQCLKID 299 (788)
Q Consensus 275 la~~~~~~g~~~eA~~~~~~al~l~ 299 (788)
+|.+|...|++++|..+|++++++.
T Consensus 342 la~~y~~~g~~~~A~~~~~~al~~~ 366 (378)
T 3q15_A 342 AAAVFESSCHFEQAAAFYRKVLKAQ 366 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 9999999999999999999998764
No 69
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.82 E-value=7.3e-20 Score=192.90 Aligned_cols=241 Identities=24% Similarity=0.296 Sum_probs=194.9
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------
Q 003891 23 LAIVLTDLGTSLKLAGNTQDGIQKYYEALKI--------DPHYAPAYYNLGVVYSELMQYDTALGCYEKAALE------- 87 (788)
Q Consensus 23 la~~l~~lg~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~------- 87 (788)
.+.++..+|..+...|++++|+.+|+++++. .|....++..+|.++...|++++|+.+++++++.
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 4566899999999999999999999999995 5667889999999999999999999999999987
Q ss_pred -CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC-----CCcHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHH
Q 003891 88 -RPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVS-----PNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALY 161 (788)
Q Consensus 88 -~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-----p~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~ 161 (788)
.|....++..+|.++...|++++|+.++++++++. ++.+ ....++..+|.++...|++++|+.+++++++
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~----~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~ 181 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHP----DVAKQLNNLALLCQNQGKYEEVEYYYQRALE 181 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCCh----HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 35567899999999999999999999999999875 3333 2356777888888889999999999999999
Q ss_pred h--------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC---------C------HHHHHHHHHHHHHcCCHH
Q 003891 162 Y--------NWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPH---------C------AEACNNLGVIYKDRDNLD 218 (788)
Q Consensus 162 ~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---------~------~~~~~~la~~~~~~g~~~ 218 (788)
. .|....++..+|.++...|++++|+..++++++..+. . ...+...+..+...+.+.
T Consensus 182 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (311)
T 3nf1_A 182 IYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFG 261 (311)
T ss_dssp HHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSC
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHH
Confidence 8 5666778999999999999999999999999975322 1 334444555566677788
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 003891 219 KAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPT 267 (788)
Q Consensus 219 eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~ 267 (788)
+|...++++....|....++..+|.+|...|++++|+++|++++++.|+
T Consensus 262 ~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 262 EYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp CCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 8888999999989999999999999999999999999999999998764
No 70
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.81 E-value=2.8e-18 Score=192.12 Aligned_cols=280 Identities=15% Similarity=0.118 Sum_probs=175.7
Q ss_pred HHHHHHHHHHcCCCChhhHHHHHHHHHHHHHHHHHcCCh---HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-----C
Q 003891 2 LVASYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNT---QDGIQKYYEALKIDPHYAPAYYNLGVVYSELM-----Q 73 (788)
Q Consensus 2 Ai~~~~kaL~~~P~~~~a~~~la~~l~~lg~~~~~~g~~---~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g-----~ 73 (788)
|++.|+++.+. ++.++ ++.+|.++...|++ ++|+.+|+++++. ++.+++.+|.++...+ +
T Consensus 22 A~~~~~~aa~~--g~~~A-------~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~---~~~A~~~Lg~~~~~~~~~~~~~ 89 (452)
T 3e4b_A 22 AQQNYQQLAEL--GYSEA-------QVGLADIQVGTRDPAQIKQAEATYRAAADT---SPRAQARLGRLLAAKPGATEAE 89 (452)
T ss_dssp HHHHHHHHHHH--TCCTG-------GGTCC-------------------------------CHHHHHHHHHTC--CCHHH
T ss_pred HHHHHHHHHHC--CCHHH-------HHHHHHHHHccCCCCCHHHHHHHHHHHHhC---CHHHHHHHHHHHHhCCCCCCcC
Confidence 56777777665 45566 34444455555666 8888888888865 6677888888666655 7
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHH---HHHHHHHHHhhCCCcHHHHHHHH-----------------
Q 003891 74 YDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLES---AIACYERCLAVSPNFEIAKNNMA----------------- 133 (788)
Q Consensus 74 ~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g~~~~---A~~~~~~al~~~p~~~~~~~~la----------------- 133 (788)
+++|+.+|+++++..+ +.+++.+|.+|...+..++ +.+.+.++..... +.+...++
T Consensus 90 ~~~A~~~~~~Aa~~g~--~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~--~~a~~~Lg~~y~~~~~~~~~~~~a~ 165 (452)
T 3e4b_A 90 HHEAESLLKKAFANGE--GNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGY--PEAGLAQVLLYRTQGTYDQHLDDVE 165 (452)
T ss_dssp HHHHHHHHHHHHHTTC--SSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTC--TTHHHHHHHHHHHHTCGGGGHHHHH
T ss_pred HHHHHHHHHHHHHCCC--HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCC--HHHHHHHHHHHHcCCCcccCHHHHH
Confidence 7888888888877433 3356666666665543222 2222222221111 11111111
Q ss_pred -----------HHHHHhhhhhhhcC---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc----CChHHHHHHHHHHHh
Q 003891 134 -----------IALTDLGTKVKLEG---DINQGVAYYKKALYYNWHYADAMYNLGVAYGEM----LKFDMAIVFYELAFH 195 (788)
Q Consensus 134 -----------~~l~~lg~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~----g~~~~A~~~~~~al~ 195 (788)
.++..+|.++...| ++++|+.+|+++.+..+.....++++|.+|... +++++|+.+|+++.
T Consensus 166 ~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa- 244 (452)
T 3e4b_A 166 RICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA- 244 (452)
T ss_dssp HHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-
Confidence 13344555666667 888888888888888888888888888888665 68888888888887
Q ss_pred cCCCCHHHHHHHHHH-H--HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHHhCCC
Q 003891 196 FNPHCAEACNNLGVI-Y--KDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQG-----KMDAAAEMIEKAIAANPT 267 (788)
Q Consensus 196 ~~p~~~~~~~~la~~-~--~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g-----~~~eA~~~l~kal~~~p~ 267 (788)
|.++.+++++|.+ + ...+++++|+.+|+++.+. .++.+++++|.+|. .| ++++|+.+|+++. +.
T Consensus 245 --~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa---~g 316 (452)
T 3e4b_A 245 --PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA--DQPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV---GR 316 (452)
T ss_dssp --GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT---TT
T ss_pred --CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh---CC
Confidence 7788888888888 4 4678888888888888754 47888888888887 55 8888888888887 77
Q ss_pred CHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCCChhhHHh
Q 003891 268 YAEAYNNLGVLYRD----AGSISLAIDAYEQCLKIDPDSRNAGQN 308 (788)
Q Consensus 268 ~~~~~~~la~~~~~----~g~~~eA~~~~~~al~l~p~~~~a~~~ 308 (788)
++.++++||.+|.. ..++++|+.+|+++.+. .+..+..+
T Consensus 317 ~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~A~~~ 359 (452)
T 3e4b_A 317 EVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARN--GQNSADFA 359 (452)
T ss_dssp CHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTT--TCTTHHHH
T ss_pred CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhh--ChHHHHHH
Confidence 88888888888876 34888888888888764 44555554
No 71
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.81 E-value=4.5e-18 Score=185.22 Aligned_cols=281 Identities=12% Similarity=-0.019 Sum_probs=229.2
Q ss_pred HHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---
Q 003891 20 AECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYA-----PAYYNLGVVYSELMQYDTALGCYEKAALERPMY--- 91 (788)
Q Consensus 20 ~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~-----~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~--- 91 (788)
....+.++..+|..+...|++++|+..+++++...|... .++..+|.++...|++++|...++++++..+..
T Consensus 10 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 89 (373)
T 1hz4_A 10 DTMHAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVW 89 (373)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcH
Confidence 345677788899999999999999999999999887653 267899999999999999999999999875432
Q ss_pred ---HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHH-HHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHhCCC--
Q 003891 92 ---AEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIA-KNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWH-- 165 (788)
Q Consensus 92 ---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~-~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~-- 165 (788)
..++..+|.++...|++++|+.++++++++.+..... ....+.++..+|.++...|++++|..+++++++..+.
T Consensus 90 ~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 169 (373)
T 1hz4_A 90 HYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQ 169 (373)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSC
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccC
Confidence 2457889999999999999999999999875321100 0122456667788888899999999999999998775
Q ss_pred ---CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC--C-HHHH----HHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-
Q 003891 166 ---YADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPH--C-AEAC----NNLGVIYKDRDNLDKAVECYQMALSIKPNF- 234 (788)
Q Consensus 166 ---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~-~~~~----~~la~~~~~~g~~~eA~~~~~~al~~~p~~- 234 (788)
...++..+|.++...|++++|...+++++...+. . .... ..++.++...|++++|..++++++...+..
T Consensus 170 ~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~ 249 (373)
T 1hz4_A 170 PQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANN 249 (373)
T ss_dssp GGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTC
T ss_pred cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcc
Confidence 2467889999999999999999999999876322 2 1111 134566889999999999999998876643
Q ss_pred ---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 003891 235 ---SQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPT------YAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDP 300 (788)
Q Consensus 235 ---~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~------~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p 300 (788)
...+..++.++...|++++|...+++++...+. ...++..+|.++...|++++|...+++++.+.+
T Consensus 250 ~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~ 324 (373)
T 1hz4_A 250 HFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLAN 324 (373)
T ss_dssp GGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhc
Confidence 336788999999999999999999999887432 235788899999999999999999999998755
No 72
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.81 E-value=3.3e-19 Score=187.61 Aligned_cols=245 Identities=15% Similarity=0.119 Sum_probs=180.2
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHc--C-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q 003891 42 DGIQKYYEALKIDPHYAPAYYNLGVVYSEL--M-QYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERC 118 (788)
Q Consensus 42 ~A~~~~~~al~~~p~~~~~~~~lg~~~~~~--g-~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 118 (788)
+|.++++++-+.-+.....+ .++.. . ++++|+.+|+++ |.+|...|++++|+.+|+++
T Consensus 3 ~a~~~~~~a~k~~~~~~~~~-----~~~~~~~~~~~~~A~~~~~~a--------------~~~~~~~g~~~~A~~~~~~a 63 (292)
T 1qqe_A 3 DPVELLKRAEKKGVPSSGFM-----KLFSGSDSYKFEEAADLCVQA--------------ATIYRLRKELNLAGDSFLKA 63 (292)
T ss_dssp CHHHHHHHHHHHSSCCCTHH-----HHHSCCSHHHHHHHHHHHHHH--------------HHHHHHTTCTHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhCcCCCcc-----hhcCCCCCccHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHHHH
Confidence 46666777766655432211 11122 1 478888888776 55677888888888888888
Q ss_pred HhhCCCcHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHc-CChHHHHHHHH
Q 003891 119 LAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHY------ADAMYNLGVAYGEM-LKFDMAIVFYE 191 (788)
Q Consensus 119 l~~~p~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~-g~~~~A~~~~~ 191 (788)
+++.+... .....+.++..+|.++...|++++|+.+|++++++.+.. ..++.++|.+|... |++++|+.+|+
T Consensus 64 l~~~~~~~-~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~ 142 (292)
T 1qqe_A 64 ADYQKKAG-NEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYE 142 (292)
T ss_dssp HHHHHHTT-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHhC-CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHH
Confidence 87754321 112335677777888888888888888888888876543 45788899999996 99999999999
Q ss_pred HHHhcCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH-------HHHHHHHHHHHcCCHHHHHHHH
Q 003891 192 LAFHFNPHC------AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQ-------SLNNLGVVYTVQGKMDAAAEMI 258 (788)
Q Consensus 192 ~al~~~p~~------~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~-------~~~~la~~~~~~g~~~eA~~~l 258 (788)
+++++.|.. ..++.++|.++..+|++++|+.+|+++++..|++.. ++.++|.++..+|++++|+.+|
T Consensus 143 ~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~ 222 (292)
T 1qqe_A 143 LAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTL 222 (292)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 999887643 567889999999999999999999999998877643 6788999999999999999999
Q ss_pred HHHHHhCCCCHHH-----HHHHHHHHH--HcCCHHHHHHHHHHHHhhCCCChhhH
Q 003891 259 EKAIAANPTYAEA-----YNNLGVLYR--DAGSISLAIDAYEQCLKIDPDSRNAG 306 (788)
Q Consensus 259 ~kal~~~p~~~~~-----~~~la~~~~--~~g~~~eA~~~~~~al~l~p~~~~a~ 306 (788)
+++++++|+.... +..++..+. ..+++++|+..|++++.++|.+....
T Consensus 223 ~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~~~~~ 277 (292)
T 1qqe_A 223 QEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWKITIL 277 (292)
T ss_dssp HGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHHHHHH
T ss_pred HHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHHHHHH
Confidence 9999998886543 445666664 45789999999999999988764443
No 73
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.81 E-value=9.4e-18 Score=187.89 Aligned_cols=303 Identities=14% Similarity=0.066 Sum_probs=216.2
Q ss_pred HHHHHHHHHHcCCCChhhHHHHHHHHHHHHHHHHHcC-----ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-------
Q 003891 2 LVASYHKALSADPSYKPAAECLAIVLTDLGTSLKLAG-----NTQDGIQKYYEALKIDPHYAPAYYNLGVVYS------- 69 (788)
Q Consensus 2 Ai~~~~kaL~~~P~~~~a~~~la~~l~~lg~~~~~~g-----~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~------- 69 (788)
|++.|+++++. ++.+ ++.+|.++...+ ++++|+.+|+++++..+ +.+++.+|.+|.
T Consensus 57 A~~~~~~A~~~---~~~A-------~~~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~~g~--~~A~~~Lg~~y~~~~~~~~ 124 (452)
T 3e4b_A 57 AEATYRAAADT---SPRA-------QARLGRLLAAKPGATEAEHHEAESLLKKAFANGE--GNTLIPLAMLYLQYPHSFP 124 (452)
T ss_dssp -----------------C-------HHHHHHHHHTC--CCHHHHHHHHHHHHHHHHTTC--SSCHHHHHHHHHHCGGGCT
T ss_pred HHHHHHHHHhC---CHHH-------HHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHHHHHHhCCCCCC
Confidence 66778888765 4445 455565444444 77889999998887533 334555555544
Q ss_pred ----------------------------HcCCH----HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC---CHHHHHHH
Q 003891 70 ----------------------------ELMQY----DTALGCYEKAALERPMYAEAYCNMGVIYKNRG---DLESAIAC 114 (788)
Q Consensus 70 ----------------------------~~g~~----~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g---~~~~A~~~ 114 (788)
..+.+ +++..+++.+... ++.+++.+|.+|...| ++++|+++
T Consensus 125 ~~~a~~~~~~a~~~g~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~---~~~a~~~Lg~~~~~~g~~~~~~~A~~~ 201 (452)
T 3e4b_A 125 NVNAQQQISQWQAAGYPEAGLAQVLLYRTQGTYDQHLDDVERICKAALNT---TDICYVELATVYQKKQQPEQQAELLKQ 201 (452)
T ss_dssp TCCHHHHHHHHHHHTCTTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTT---CTTHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcC---CHHHHHHHHHHHHHcCCcccHHHHHHH
Confidence 44422 2333333333333 3449999999999999 99999999
Q ss_pred HHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH-H--HHcCChHHHHHHHH
Q 003891 115 YERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVA-Y--GEMLKFDMAIVFYE 191 (788)
Q Consensus 115 ~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~-~--~~~g~~~~A~~~~~ 191 (788)
|+++.+..+.....+++++.++... ....+++++|+.+|+++. |.++.+++++|.+ + ...+++++|+.+|+
T Consensus 202 ~~~aa~~g~~~a~~~~~Lg~~y~~g---~~~~~d~~~A~~~~~~aa---~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~ 275 (452)
T 3e4b_A 202 MEAGVSRGTVTAQRVDSVARVLGDA---TLGTPDEKTAQALLEKIA---PGYPASWVSLAQLLYDFPELGDVEQMMKYLD 275 (452)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHTCG---GGSSCCHHHHHHHHHHHG---GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCC---CCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Confidence 9999999998876556666555321 123479999999999998 8999999999998 4 57899999999999
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHH
Q 003891 192 LAFHFNPHCAEACNNLGVIYKDRD-----NLDKAVECYQMALSIKPNFSQSLNNLGVVYTV----QGKMDAAAEMIEKAI 262 (788)
Q Consensus 192 ~al~~~p~~~~~~~~la~~~~~~g-----~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~eA~~~l~kal 262 (788)
++.+. .++.+++++|.+|. .| ++++|+.+|+++. +.++.+++++|.+|.. ..++++|+.+|+++.
T Consensus 276 ~Aa~~--g~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa---~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa 349 (452)
T 3e4b_A 276 NGRAA--DQPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV---GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAA 349 (452)
T ss_dssp HHHHT--TCHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT---TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHH
T ss_pred HHHHC--CCHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh---CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHH
Confidence 99865 48999999999998 55 9999999999998 8999999999999887 459999999999998
Q ss_pred HhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCCChhhHHhHHHHhhhccCCCchHHHHHHHHHHHHH
Q 003891 263 AANPTYAEAYNNLGVLYRD----AGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHRDWGKRF 335 (788)
Q Consensus 263 ~~~p~~~~~~~~la~~~~~----~g~~~eA~~~~~~al~l~p~~~~a~~~~lla~~~l~~g~~~~~~~~~~~~~~~~ 335 (788)
+. .++.+.++||.+|.. ..++++|..+|+++.+..+ ..+...+......+...+..++....++|...-
T Consensus 350 ~~--g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~--~~a~~~l~~l~~~~~~~~~~~a~~~~~~~~~~~ 422 (452)
T 3e4b_A 350 RN--GQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDT--PEANDLATQLEAPLTPAQRAEGQRLVQQELAAR 422 (452)
T ss_dssp TT--TCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCC--HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHH
T ss_pred hh--ChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCC--HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhc
Confidence 74 567889999999985 5699999999999998754 444443333333333333445555666665543
No 74
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.80 E-value=2e-18 Score=178.12 Aligned_cols=217 Identities=12% Similarity=0.060 Sum_probs=168.7
Q ss_pred HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHH
Q 003891 51 LKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMY---AEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEI 127 (788)
Q Consensus 51 l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 127 (788)
.+.+|.++..++.+|..++..|++++|+..|+++++..|.+ ..+++.+|.+|...|++++|+..|+++++..|+++.
T Consensus 8 ~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~ 87 (261)
T 3qky_A 8 GRLRHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPR 87 (261)
T ss_dssp ---CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTT
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCch
Confidence 35678899999999999999999999999999999999998 899999999999999999999999999999886542
Q ss_pred HHHHHHHHHHHhhhhhhh--------cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC
Q 003891 128 AKNNMAIALTDLGTKVKL--------EGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPH 199 (788)
Q Consensus 128 ~~~~la~~l~~lg~~~~~--------~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 199 (788)
. ..+++.+|.++.. .|++++|+..|+++++.+|++..+...+..+....++
T Consensus 88 ~----~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~----------------- 146 (261)
T 3qky_A 88 V----PQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAK----------------- 146 (261)
T ss_dssp H----HHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHH-----------------
T ss_pred h----HHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHH-----------------
Confidence 1 3445556666666 7799999999999999998876554443332221111
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC---CHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHHhCC
Q 003891 200 CAEACNNLGVIYKDRDNLDKAVECYQMALSIKPN---FSQSLNNLGVVYTVQ----------GKMDAAAEMIEKAIAANP 266 (788)
Q Consensus 200 ~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~---~~~~~~~la~~~~~~----------g~~~eA~~~l~kal~~~p 266 (788)
....++.+|.+|...|++++|+..|+++++..|+ ...+++.+|.+|..+ |++++|+..|+++++..|
T Consensus 147 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p 226 (261)
T 3qky_A 147 LARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFP 226 (261)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCC
Confidence 1234678888888888888888888888888887 456888888888866 888888888888888888
Q ss_pred CCH---HHHHHHHHHHHHcCCHHHH
Q 003891 267 TYA---EAYNNLGVLYRDAGSISLA 288 (788)
Q Consensus 267 ~~~---~~~~~la~~~~~~g~~~eA 288 (788)
+++ .+...++.++..+++++++
T Consensus 227 ~~~~~~~a~~~l~~~~~~~~~~~~~ 251 (261)
T 3qky_A 227 DSPLLRTAEELYTRARQRLTELEGD 251 (261)
T ss_dssp TCTHHHHHHHHHHHHHHHHHHHHTC
T ss_pred CChHHHHHHHHHHHHHHHHHHhhhh
Confidence 874 4555666666666665543
No 75
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.80 E-value=1.1e-17 Score=175.22 Aligned_cols=235 Identities=11% Similarity=-0.004 Sum_probs=203.6
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhcCCHHHH
Q 003891 75 DTALGCYEKAALERPMYAEAYCNMGVIYKNRG--DLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQG 152 (788)
Q Consensus 75 ~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~g~~~~A 152 (788)
++|+..+++++.++|++..+|+..+.++...+ +++++++.+++++..+|++..+|.....++..+.......++++++
T Consensus 50 ~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~E 129 (306)
T 3dra_A 50 ERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYRE 129 (306)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHHH
T ss_pred HHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHHH
Confidence 57777777788888887778888887777777 8888888888888888888888877777773332211113688999
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCChH--HHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC------HHHHHHHH
Q 003891 153 VAYYKKALYYNWHYADAMYNLGVAYGEMLKFD--MAIVFYELAFHFNPHCAEACNNLGVIYKDRDN------LDKAVECY 224 (788)
Q Consensus 153 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~--~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~------~~eA~~~~ 224 (788)
+++++++++.+|.+..+|...+.++...|.++ +++++++++++.+|.+..+|...+.++...++ ++++++++
T Consensus 130 L~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~ 209 (306)
T 3dra_A 130 FDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKHLATDNTIDEELNYV 209 (306)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccchhhhHHHHHHHH
Confidence 99999999999999999999999999999998 99999999999999999999999999999987 99999999
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHHcCCHHH-HHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-hC
Q 003891 225 QMALSIKPNFSQSLNNLGVVYTVQGKMDA-AAEMIEKAIAAN---PTYAEAYNNLGVLYRDAGSISLAIDAYEQCLK-ID 299 (788)
Q Consensus 225 ~~al~~~p~~~~~~~~la~~~~~~g~~~e-A~~~l~kal~~~---p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~-l~ 299 (788)
++++..+|++..+|+.++.++...|+..+ ...+++++++++ +.++.++..++.+|.+.|+.++|+++|+++.+ ++
T Consensus 210 ~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~~~D 289 (306)
T 3dra_A 210 KDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKSKYN 289 (306)
T ss_dssp HHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhccC
Confidence 99999999999999999999999998555 556778777776 88899999999999999999999999999996 89
Q ss_pred CCChhhHHhH
Q 003891 300 PDSRNAGQNR 309 (788)
Q Consensus 300 p~~~~a~~~~ 309 (788)
|-....+..+
T Consensus 290 pir~~yW~~~ 299 (306)
T 3dra_A 290 PIRSNFWDYQ 299 (306)
T ss_dssp GGGHHHHHHH
T ss_pred hHHHHHHHHH
Confidence 9888777654
No 76
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.80 E-value=2e-17 Score=173.23 Aligned_cols=238 Identities=13% Similarity=0.028 Sum_probs=217.8
Q ss_pred HHHcCCh-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHH----HHC-
Q 003891 34 LKLAGNT-QDGIQKYYEALKIDPHYAPAYYNLGVVYSELM--QYDTALGCYEKAALERPMYAEAYCNMGVIY----KNR- 105 (788)
Q Consensus 34 ~~~~g~~-~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g--~~~~A~~~~~kal~~~p~~~~~~~~la~~~----~~~- 105 (788)
....|.+ ++|+.++.+++.++|++..+|+..+.++..++ ++++++.++++++..+|++..+|+..+.++ ...
T Consensus 42 ~~~~~e~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~ 121 (306)
T 3dra_A 42 LMKAEEYSERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNN 121 (306)
T ss_dssp HHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTT
T ss_pred HHHcCCCCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhcc
Confidence 3445555 79999999999999999999999999999999 999999999999999999999999999999 777
Q ss_pred --CCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhcCCHH--HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 003891 106 --GDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDIN--QGVAYYKKALYYNWHYADAMYNLGVAYGEML 181 (788)
Q Consensus 106 --g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~g~~~--~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 181 (788)
+++++++++++++++.+|++..+|.....++..++ .++ +++++++++++.+|.+..+|...+.++...+
T Consensus 122 ~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~-------~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~ 194 (306)
T 3dra_A 122 NDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFD-------LHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKK 194 (306)
T ss_dssp TCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT-------CTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSG
T ss_pred ccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc-------ccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcc
Confidence 89999999999999999999999998888887765 566 9999999999999999999999999999998
Q ss_pred C------hHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHH-HHHHHHHHHhhC---CCCHHHHHHHHHHHHHcCCH
Q 003891 182 K------FDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDK-AVECYQMALSIK---PNFSQSLNNLGVVYTVQGKM 251 (788)
Q Consensus 182 ~------~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~e-A~~~~~~al~~~---p~~~~~~~~la~~~~~~g~~ 251 (788)
+ ++++++++++++..+|++..+|+.++.++...|+..+ ...+++++++.. +.++.++..++.++.+.|+.
T Consensus 195 ~~~~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~ 274 (306)
T 3dra_A 195 HLATDNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKY 274 (306)
T ss_dssp GGCCHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCH
T ss_pred ccchhhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCH
Confidence 7 9999999999999999999999999999999998555 556777777766 88999999999999999999
Q ss_pred HHHHHHHHHHHH-hCCCCHHHHHHHHHH
Q 003891 252 DAAAEMIEKAIA-ANPTYAEAYNNLGVL 278 (788)
Q Consensus 252 ~eA~~~l~kal~-~~p~~~~~~~~la~~ 278 (788)
++|+++|+++.+ .+|-....|...+..
T Consensus 275 ~~A~~~~~~l~~~~Dpir~~yW~~~~~~ 302 (306)
T 3dra_A 275 NESRTVYDLLKSKYNPIRSNFWDYQISK 302 (306)
T ss_dssp HHHHHHHHHHHHTTCGGGHHHHHHHHHT
T ss_pred HHHHHHHHHHHhccChHHHHHHHHHHhh
Confidence 999999999997 799999988877654
No 77
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.80 E-value=1.4e-18 Score=182.76 Aligned_cols=251 Identities=13% Similarity=0.042 Sum_probs=197.7
Q ss_pred HHHHHHHHHHcCCCChhhHHHHHHHHHHHHHHHHHc--C-ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Q 003891 2 LVASYHKALSADPSYKPAAECLAIVLTDLGTSLKLA--G-NTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTAL 78 (788)
Q Consensus 2 Ai~~~~kaL~~~P~~~~a~~~la~~l~~lg~~~~~~--g-~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~ 78 (788)
|.++++++-+..+..... + .++.. + ++++|+.+|+++ |.+|...|++++|+
T Consensus 4 a~~~~~~a~k~~~~~~~~--------~----~~~~~~~~~~~~~A~~~~~~a--------------~~~~~~~g~~~~A~ 57 (292)
T 1qqe_A 4 PVELLKRAEKKGVPSSGF--------M----KLFSGSDSYKFEEAADLCVQA--------------ATIYRLRKELNLAG 57 (292)
T ss_dssp HHHHHHHHHHHSSCCCTH--------H----HHHSCCSHHHHHHHHHHHHHH--------------HHHHHHTTCTHHHH
T ss_pred HHHHHHHHHHHhCcCCCc--------c----hhcCCCCCccHHHHHHHHHHH--------------HHHHHHcCCHHHHH
Confidence 556777777776653222 1 11222 2 589999999987 66788999999999
Q ss_pred HHHHHHHHhCCC------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhc-CCHHH
Q 003891 79 GCYEKAALERPM------YAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLE-GDINQ 151 (788)
Q Consensus 79 ~~~~kal~~~p~------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~-g~~~~ 151 (788)
.+|++++++.+. .+.++.++|.+|..+|++++|+.+|++++++.+.... ....+.++..+|.++... |++++
T Consensus 58 ~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~-~~~~a~~~~~lg~~~~~~lg~~~~ 136 (292)
T 1qqe_A 58 DSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQ-FRRGANFKFELGEILENDLHDYAK 136 (292)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHTTCCHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHhhcCHHH
Confidence 999999987432 2678999999999999999999999999998765321 223466788899999986 99999
Q ss_pred HHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHH-------HHHHHHHHHHHcCCHH
Q 003891 152 GVAYYKKALYYNWHY------ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAE-------ACNNLGVIYKDRDNLD 218 (788)
Q Consensus 152 A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~-------~~~~la~~~~~~g~~~ 218 (788)
|+.+|++++++.|.. ..++.++|.++..+|++++|+.+|+++++..|++.. ++.++|.++..+|+++
T Consensus 137 A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~ 216 (292)
T 1qqe_A 137 AIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAV 216 (292)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHH
Confidence 999999999987754 467899999999999999999999999999887543 6889999999999999
Q ss_pred HHHHHHHHHHhhCCCCHH-----HHHHHHHHHH--HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 003891 219 KAVECYQMALSIKPNFSQ-----SLNNLGVVYT--VQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLY 279 (788)
Q Consensus 219 eA~~~~~~al~~~p~~~~-----~~~~la~~~~--~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~ 279 (788)
+|+.+|+++++++|+... .+..++..+. ..+++++|+..|++++.++|....++..+-..+
T Consensus 217 ~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~~~~~~~~k~~~ 284 (292)
T 1qqe_A 217 AAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWKITILNKIKESI 284 (292)
T ss_dssp HHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHHHHHHHHHHHHh
Confidence 999999999999998655 3455666654 457899999999999999887766666655544
No 78
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.79 E-value=1.8e-18 Score=189.08 Aligned_cols=239 Identities=15% Similarity=0.146 Sum_probs=203.2
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-------C
Q 003891 25 IVLTDLGTSLKLAGNTQDGIQKYYEALKIDP------HYAPAYYNLGVVYSELMQYDTALGCYEKAALERPM-------Y 91 (788)
Q Consensus 25 ~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p------~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~-------~ 91 (788)
..++.+|..+...|++++|+..|+++++..+ ..+.+++.+|.+|...|++++|+.+++++++..+. .
T Consensus 102 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 181 (378)
T 3q15_A 102 YSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRT 181 (378)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHH
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhH
Confidence 3577889999999999999999999998732 24678999999999999999999999999986432 2
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHH-----hCCCC
Q 003891 92 AEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALY-----YNWHY 166 (788)
Q Consensus 92 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~-----~~p~~ 166 (788)
..++..+|.+|...|++++|+++|++++++.+.... ....+.++..+|.++...|++++|+.+++++++ .+|..
T Consensus 182 ~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~ 260 (378)
T 3q15_A 182 IQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQN-DRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLL 260 (378)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhH
Confidence 568899999999999999999999999997543221 124577888999999999999999999999999 67777
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-----CCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhhCCCCHHHH
Q 003891 167 ADAMYNLGVAYGEMLKFDMAIVFYELAFHFN-----PHCAEACNNLGVIYKDRDN---LDKAVECYQMALSIKPNFSQSL 238 (788)
Q Consensus 167 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-----p~~~~~~~~la~~~~~~g~---~~eA~~~~~~al~~~p~~~~~~ 238 (788)
..++..+|.++...|++++|+.+++++++.. +.....+..++.++...++ +.+|+.++++. ...+.....+
T Consensus 261 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~-~~~~~~~~~~ 339 (378)
T 3q15_A 261 PKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK-NLHAYIEACA 339 (378)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT-TCHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC-CChhHHHHHH
Confidence 8899999999999999999999999999984 3345567788888888888 88888888872 2233445678
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 003891 239 NNLGVVYTVQGKMDAAAEMIEKAIAAN 265 (788)
Q Consensus 239 ~~la~~~~~~g~~~eA~~~l~kal~~~ 265 (788)
..+|.+|...|++++|+.+|+++++..
T Consensus 340 ~~la~~y~~~g~~~~A~~~~~~al~~~ 366 (378)
T 3q15_A 340 RSAAAVFESSCHFEQAAAFYRKVLKAQ 366 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 899999999999999999999998753
No 79
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.78 E-value=7.2e-18 Score=174.01 Aligned_cols=216 Identities=18% Similarity=0.172 Sum_probs=176.1
Q ss_pred HHcCCCChhhHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003891 10 LSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHY---APAYYNLGVVYSELMQYDTALGCYEKAAL 86 (788)
Q Consensus 10 L~~~P~~~~a~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~kal~ 86 (788)
.+.+|.+... ++.+|..++..|++++|+..|+++++.+|++ ..+++.+|.++...|++++|+..|+++++
T Consensus 8 ~~~~~~~~~~-------~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~ 80 (261)
T 3qky_A 8 GRLRHSSPQE-------AFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQ 80 (261)
T ss_dssp ---CCSSHHH-------HHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCCCCCCHHH-------HHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 3456666655 7888999999999999999999999999998 99999999999999999999999999999
Q ss_pred hCCCC---HHHHHHHHHHHHH--------CCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhcCCHHHHHHH
Q 003891 87 ERPMY---AEAYCNMGVIYKN--------RGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAY 155 (788)
Q Consensus 87 ~~p~~---~~~~~~la~~~~~--------~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~ 155 (788)
..|++ ..+++.+|.++.. .|++++|+..|+++++.+|++......+..+...
T Consensus 81 ~~p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~----------------- 143 (261)
T 3qky_A 81 IYQIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIREL----------------- 143 (261)
T ss_dssp HCTTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHH-----------------
T ss_pred HCCCCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHH-----------------
Confidence 98854 6789999999999 9999999999999999999876443222111100
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC---CHHHHHHHHHHHHHc----------CCHHHHHH
Q 003891 156 YKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPH---CAEACNNLGVIYKDR----------DNLDKAVE 222 (788)
Q Consensus 156 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~la~~~~~~----------g~~~eA~~ 222 (788)
.+.....++.+|.+|...|++++|+..|+++++..|+ ...+++.+|.+|... |++++|+.
T Consensus 144 -------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~ 216 (261)
T 3qky_A 144 -------RAKLARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVE 216 (261)
T ss_dssp -------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHH
T ss_pred -------HHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHH
Confidence 0111234778889999999999999999999988887 467888999988876 88899999
Q ss_pred HHHHHHhhCCCCH---HHHHHHHHHHHHcCCHHHHHH
Q 003891 223 CYQMALSIKPNFS---QSLNNLGVVYTVQGKMDAAAE 256 (788)
Q Consensus 223 ~~~~al~~~p~~~---~~~~~la~~~~~~g~~~eA~~ 256 (788)
.|+++++..|+++ .+...++.++...++++++..
T Consensus 217 ~~~~~~~~~p~~~~~~~a~~~l~~~~~~~~~~~~~~~ 253 (261)
T 3qky_A 217 LYERLLQIFPDSPLLRTAEELYTRARQRLTELEGDAS 253 (261)
T ss_dssp HHHHHHHHCTTCTHHHHHHHHHHHHHHHHHHHHTCTT
T ss_pred HHHHHHHHCCCChHHHHHHHHHHHHHHHHHHhhhhhH
Confidence 9999999999884 466777888888887776543
No 80
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.78 E-value=3.9e-18 Score=200.85 Aligned_cols=187 Identities=14% Similarity=-0.011 Sum_probs=158.2
Q ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH--------HhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCC
Q 003891 53 IDPHYAPAYYNLGVVYSELMQYDTALGCYEKAA--------LERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPN 124 (788)
Q Consensus 53 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal--------~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 124 (788)
.+|+++.+++..+ ...|++++|++.+++++ +.+|++..++..+|.++...|++++|+..|+++++.+|+
T Consensus 389 ~~p~~~~a~~~~a---~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~ 465 (681)
T 2pzi_A 389 VDPTDVAASVLQA---TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGW 465 (681)
T ss_dssp CCTTSTTHHHHHH---TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCC
T ss_pred CCCCCcchHHhhc---ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcc
Confidence 3677777777766 77889999999999999 888999999999999999999999999999999999998
Q ss_pred cHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHH
Q 003891 125 FEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEAC 204 (788)
Q Consensus 125 ~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 204 (788)
+..++..++.++.. .|++++|+..|+++++++|++..+++++|.++...|++++ ++.|+++++.+|++..++
T Consensus 466 ~~~a~~~lg~~~~~-------~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~ 537 (681)
T 2pzi_A 466 RWRLVWYRAVAELL-------TGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAA 537 (681)
T ss_dssp CHHHHHHHHHHHHH-------HTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHH
T ss_pred hHHHHHHHHHHHHH-------cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHH
Confidence 87666555555444 5699999999999999999999999999999999999999 999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC
Q 003891 205 NNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGK 250 (788)
Q Consensus 205 ~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 250 (788)
+++|.++..+|++++|+..|+++++++|++..++.++|.++...++
T Consensus 538 ~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 538 FGLARARSAEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred HHHHHHHHHcCCHHHHHHHHHhhcccCcccHHHHHHHHHHHHccCC
Confidence 9999999999999999999999999999989999999998877665
No 81
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.77 E-value=1.7e-17 Score=160.09 Aligned_cols=173 Identities=18% Similarity=0.235 Sum_probs=165.8
Q ss_pred HHHHHHhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 003891 133 AIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYK 212 (788)
Q Consensus 133 a~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 212 (788)
+..+..+|..+...|++++|+..++++++..|.+..++..+|.++...|++++|+..++++++..|.+..++..+|.++.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 45667778888889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 003891 213 DRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAY 292 (788)
Q Consensus 213 ~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~~eA~~~~ 292 (788)
..|++++|+.+++++++..|.+..++..+|.++...|++++|+.+++++++..|+++.++..+|.++...|++++|..++
T Consensus 88 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 167 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHF 167 (186)
T ss_dssp HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhCCCChhh
Q 003891 293 EQCLKIDPDSRNA 305 (788)
Q Consensus 293 ~~al~l~p~~~~a 305 (788)
+++++++|++...
T Consensus 168 ~~~~~~~~~~~~~ 180 (186)
T 3as5_A 168 KKANELDEGASVE 180 (186)
T ss_dssp HHHHHHHHCCCGG
T ss_pred HHHHHcCCCchhh
Confidence 9999999987654
No 82
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.77 E-value=1.3e-17 Score=196.51 Aligned_cols=187 Identities=14% Similarity=-0.011 Sum_probs=167.6
Q ss_pred cCCCChhhHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHH--------HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 003891 12 ADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEAL--------KIDPHYAPAYYNLGVVYSELMQYDTALGCYEK 83 (788)
Q Consensus 12 ~~P~~~~a~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al--------~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~k 83 (788)
.+|+++.+.. ..| ...|++++|++.|++++ +.+|++..+++.+|.++...|++++|+..|++
T Consensus 389 ~~p~~~~a~~-------~~a---~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~ 458 (681)
T 2pzi_A 389 VDPTDVAASV-------LQA---TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDD 458 (681)
T ss_dssp CCTTSTTHHH-------HHH---TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred CCCCCcchHH-------hhc---ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 4677766633 233 67899999999999999 89999999999999999999999999999999
Q ss_pred HHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHhC
Q 003891 84 AALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYN 163 (788)
Q Consensus 84 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~ 163 (788)
+++.+|++..+++++|.++...|++++|++.|+++++++|++...+.+++.++.. .|++++ +..|+++++.+
T Consensus 459 al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~-------~g~~~~-~~~~~~al~~~ 530 (681)
T 2pzi_A 459 LAERVGWRWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLALAATAEL-------AGNTDE-HKFYQTVWSTN 530 (681)
T ss_dssp HHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHH-------HTCCCT-TCHHHHHHHHC
T ss_pred HhccCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH-------cCChHH-HHHHHHHHHhC
Confidence 9999999999999999999999999999999999999999998776666555554 569999 99999999999
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC
Q 003891 164 WHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDN 216 (788)
Q Consensus 164 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 216 (788)
|++..+++++|.++..+|++++|++.|+++++++|++..++.++|.++...++
T Consensus 531 P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 531 DGVISAAFGLARARSAEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred CchHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCcccHHHHHHHHHHHHccCC
Confidence 99999999999999999999999999999999999999999999999988666
No 83
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.75 E-value=2.7e-18 Score=161.40 Aligned_cols=146 Identities=20% Similarity=0.282 Sum_probs=98.0
Q ss_pred hhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHH
Q 003891 139 LGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLD 218 (788)
Q Consensus 139 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 218 (788)
||.++..+|++++|+..+++++..+|+++..++.+|.+|...|++++|++.|+++++++|+++.++..+|.++...|+++
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~ 82 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTD 82 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred hHHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchH
Confidence 45556666677777777777776666666666677777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHH-HHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 003891 219 KAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEM-IEKAIAANPTYAEAYNNLGVLYRDAGS 284 (788)
Q Consensus 219 eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~-l~kal~~~p~~~~~~~~la~~~~~~g~ 284 (788)
+|+.+|+++++++|+++.++.++|.+|...|++++|.+. ++++++++|+++.++..++.++..+|+
T Consensus 83 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 83 KAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 777777777777777777777777777777766655543 466777777777766666666666554
No 84
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.75 E-value=2e-16 Score=172.04 Aligned_cols=275 Identities=14% Similarity=0.005 Sum_probs=220.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHH
Q 003891 58 APAYYNLGVVYSELMQYDTALGCYEKAALERPMYA-----EAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNM 132 (788)
Q Consensus 58 ~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~-----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 132 (788)
..++..+|.++...|++++|+..+++++...|... .++..+|.++...|++++|+..+++++++.+..... ...
T Consensus 14 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~~ 92 (373)
T 1hz4_A 14 AEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVW-HYA 92 (373)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCH-HHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcH-HHH
Confidence 45677889999999999999999999999877542 368899999999999999999999999986654322 234
Q ss_pred HHHHHHhhhhhhhcCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-----
Q 003891 133 AIALTDLGTKVKLEGDINQGVAYYKKALYYN--------WHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPH----- 199 (788)
Q Consensus 133 a~~l~~lg~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~----- 199 (788)
+.++..+|.++...|++++|+.+++++++.. |....++.++|.++...|++++|...+++++...+.
T Consensus 93 ~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 172 (373)
T 1hz4_A 93 LWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQ 172 (373)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGG
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHH
Confidence 5667888999999999999999999999874 234557888999999999999999999999998764
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC--CC-HHHH----HHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----
Q 003891 200 CAEACNNLGVIYKDRDNLDKAVECYQMALSIKP--NF-SQSL----NNLGVVYTVQGKMDAAAEMIEKAIAANPTY---- 268 (788)
Q Consensus 200 ~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p--~~-~~~~----~~la~~~~~~g~~~eA~~~l~kal~~~p~~---- 268 (788)
...++..+|.++...|++++|..++++++...+ .. .... ..++.++...|++++|..++++++...+..
T Consensus 173 ~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 252 (373)
T 1hz4_A 173 QLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFL 252 (373)
T ss_dssp GHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGG
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhh
Confidence 356788999999999999999999999987732 22 2211 134566889999999999999998876643
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCh----hhHHhHHHHhhhccCCCchHHHHHHHHHHH
Q 003891 269 AEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSR----NAGQNRLLAMNYINEGHDDKLFEAHRDWGK 333 (788)
Q Consensus 269 ~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~----~a~~~~lla~~~l~~g~~~~~~~~~~~~~~ 333 (788)
...+..++.++...|++++|...+++++...+... .......++..+...|+.+++....++...
T Consensus 253 ~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 253 QGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 34678899999999999999999999988755422 112334567777888888887766555443
No 85
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.75 E-value=9.7e-18 Score=173.59 Aligned_cols=225 Identities=18% Similarity=0.233 Sum_probs=175.6
Q ss_pred cCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC-----CCcHHHHHHHHHHHH
Q 003891 71 LMQYDTALGCYEKAALE--------RPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVS-----PNFEIAKNNMAIALT 137 (788)
Q Consensus 71 ~g~~~~A~~~~~kal~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-----p~~~~~~~~la~~l~ 137 (788)
.|++++|+.+|+++++. .|....++..+|.++...|++++|+.++++++++. ++.+ ..+.++.
T Consensus 14 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~----~~~~~~~ 89 (283)
T 3edt_B 14 LVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHP----AVAATLN 89 (283)
T ss_dssp CSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCH----HHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcch----HHHHHHH
Confidence 45555666666666552 24557788889999999999999999999988874 3333 2356778
Q ss_pred HhhhhhhhcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--------CCCCH
Q 003891 138 DLGTKVKLEGDINQGVAYYKKALYY--------NWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHF--------NPHCA 201 (788)
Q Consensus 138 ~lg~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~~~ 201 (788)
.+|.++...|++++|+.+++++++. +|....++..+|.++...|++++|+.+++++++. .|...
T Consensus 90 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 169 (283)
T 3edt_B 90 NLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVA 169 (283)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHH
Confidence 8888888999999999999999988 4566778999999999999999999999999998 66678
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh---------CCCCHHHHHHHHHHHHHcCC------HHHHHHHHHHHHHhCC
Q 003891 202 EACNNLGVIYKDRDNLDKAVECYQMALSI---------KPNFSQSLNNLGVVYTVQGK------MDAAAEMIEKAIAANP 266 (788)
Q Consensus 202 ~~~~~la~~~~~~g~~~eA~~~~~~al~~---------~p~~~~~~~~la~~~~~~g~------~~eA~~~l~kal~~~p 266 (788)
.++..+|.++...|++++|+.+++++++. .+.....+..++..+...+. +.++...++......|
T Consensus 170 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (283)
T 3edt_B 170 KTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSP 249 (283)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCH
Confidence 89999999999999999999999999986 34455577777777665444 4444444444444456
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 003891 267 TYAEAYNNLGVLYRDAGSISLAIDAYEQCLKID 299 (788)
Q Consensus 267 ~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~ 299 (788)
....++..+|.+|..+|++++|+.+|++++++.
T Consensus 250 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 282 (283)
T 3edt_B 250 TVNTTLRSLGALYRRQGKLEAAHTLEDCASRNR 282 (283)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 667889999999999999999999999998763
No 86
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.74 E-value=2.2e-17 Score=164.32 Aligned_cols=168 Identities=16% Similarity=0.145 Sum_probs=123.9
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHH----------------HHHHHHHcCCHHHHHHHHHHHHHhCC
Q 003891 26 VLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYN----------------LGVVYSELMQYDTALGCYEKAALERP 89 (788)
Q Consensus 26 ~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~----------------lg~~~~~~g~~~~A~~~~~kal~~~p 89 (788)
.++..|..+...|++++|+..|+++++.+|+++.+++. +|.++...|++++|+..|+++++.+|
T Consensus 6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 85 (208)
T 3urz_A 6 EMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAP 85 (208)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC
Confidence 46778888888999999999999999999999888888 88888888888888888888888888
Q ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHH
Q 003891 90 MYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADA 169 (788)
Q Consensus 90 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 169 (788)
++..++..+|.++...|++++|+..|+++++++|++..++..++.++...+ ..+...+...+++++...| ...+
T Consensus 86 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~-----~~~~~~~~~~~~~~~~~~~-~~~a 159 (208)
T 3urz_A 86 NNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTA-----EQEKKKLETDYKKLSSPTK-MQYA 159 (208)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-----HHHHHHHHHHHC---CCCH-HHHH
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHh-----HHHHHHHHHHHHHHhCCCc-hhHH
Confidence 888888888888888888888888888888888888777777776665544 1234455666666543221 1234
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhcCCC
Q 003891 170 MYNLGVAYGEMLKFDMAIVFYELAFHFNPH 199 (788)
Q Consensus 170 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 199 (788)
++.+|.++...|++++|+..|+++++++|+
T Consensus 160 ~~~~g~~~~~~~~~~~A~~~~~~al~l~P~ 189 (208)
T 3urz_A 160 RYRDGLSKLFTTRYEKARNSLQKVILRFPS 189 (208)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHHHHTTTSCC
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence 566676777777777777777777777775
No 87
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=99.73 E-value=2.3e-15 Score=158.38 Aligned_cols=240 Identities=11% Similarity=0.065 Sum_probs=149.3
Q ss_pred HHcCChH-HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 003891 35 KLAGNTQ-DGIQKYYEALKIDPHYAPAYYNLGVVYSELMQ----------YDTALGCYEKAALERPMYAEAYCNMGVIYK 103 (788)
Q Consensus 35 ~~~g~~~-~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~----------~~~A~~~~~kal~~~p~~~~~~~~la~~~~ 103 (788)
...|.+. +|+.++.+++..+|++..+|+..+.++...+. +++++.++++++..+|.+..+|...+.++.
T Consensus 40 ~~~~e~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~ 119 (331)
T 3dss_A 40 RQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLS 119 (331)
T ss_dssp HHTTCCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHh
Confidence 3456654 67888888888888888888888888776665 567777777777777777777777777777
Q ss_pred HCCC--HHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhcCC-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 003891 104 NRGD--LESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGD-INQGVAYYKKALYYNWHYADAMYNLGVAYGEM 180 (788)
Q Consensus 104 ~~g~--~~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 180 (788)
..++ +++++.++.++++.+|.+..+|.....++..++ . ++++++++.++++.+|.+..+|..++.++...
T Consensus 120 ~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~-------~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l 192 (331)
T 3dss_A 120 RLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAA-------VAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQL 192 (331)
T ss_dssp HCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT-------CCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHH
T ss_pred ccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhC-------cCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHh
Confidence 7773 777777777777777777777766666665544 3 46777777777777777777777777776665
Q ss_pred --------------CChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 003891 181 --------------LKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDR-DNLDKAVECYQMALSIKPNFSQSLNNLGVVY 245 (788)
Q Consensus 181 --------------g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-g~~~eA~~~~~~al~~~p~~~~~~~~la~~~ 245 (788)
+.++++++++.+++..+|++..+|+.+..++... |... ++ -
T Consensus 193 ~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~----------------------~~--~ 248 (331)
T 3dss_A 193 HPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCE----------------------LS--V 248 (331)
T ss_dssp SCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGG----------------------CC--H
T ss_pred hhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccc----------------------cc--h
Confidence 3355555555555555555555555444443333 1000 00 0
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH---HcCCHHHHHHHHHHHHhhCCCChhh
Q 003891 246 TVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYR---DAGSISLAIDAYEQCLKIDPDSRNA 305 (788)
Q Consensus 246 ~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~---~~g~~~eA~~~~~~al~l~p~~~~a 305 (788)
...+.++++++.+++++++.|++.-.+..++.+.. ..|..++...++.+.+++||-....
T Consensus 249 ~~~~~l~~el~~~~elle~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~ 311 (331)
T 3dss_A 249 EKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAY 311 (331)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHH
T ss_pred HHHHHHHHHHHHHHHHHhhCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhH
Confidence 00133555555555555555555433333332222 2345566666666666666654443
No 88
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.73 E-value=1.9e-17 Score=171.40 Aligned_cols=227 Identities=22% Similarity=0.259 Sum_probs=182.5
Q ss_pred HHcCChHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHH
Q 003891 35 KLAGNTQDGIQKYYEALKI--------DPHYAPAYYNLGVVYSELMQYDTALGCYEKAALE--------RPMYAEAYCNM 98 (788)
Q Consensus 35 ~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~--------~p~~~~~~~~l 98 (788)
...|++++|+.+|+++++. .|....++..+|.++...|++++|+.+++++++. .|....++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 3568888899999988884 3556889999999999999999999999999987 35567899999
Q ss_pred HHHHHHCCCHHHHHHHHHHHHhhC-----CCcHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHh--------CCC
Q 003891 99 GVIYKNRGDLESAIACYERCLAVS-----PNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYY--------NWH 165 (788)
Q Consensus 99 a~~~~~~g~~~~A~~~~~~al~~~-----p~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~--------~p~ 165 (788)
|.++...|++++|+.+|++++++. ++++ ....++..+|.++...|++++|+.+++++++. .|.
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 167 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHP----DVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPN 167 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCCh----HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHH
Confidence 999999999999999999999883 3322 23566777888888899999999999999998 666
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHhc---------CCCCHHHHHHHHHHHHHcCC------HHHHHHHHHHHHhh
Q 003891 166 YADAMYNLGVAYGEMLKFDMAIVFYELAFHF---------NPHCAEACNNLGVIYKDRDN------LDKAVECYQMALSI 230 (788)
Q Consensus 166 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---------~p~~~~~~~~la~~~~~~g~------~~eA~~~~~~al~~ 230 (788)
...++..+|.++...|++++|+..++++++. .+.....+..++..+...+. +.++...++.....
T Consensus 168 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (283)
T 3edt_B 168 VAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVD 247 (283)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCC
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCC
Confidence 6788999999999999999999999999986 44556677777777766554 33444444444334
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 003891 231 KPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAAN 265 (788)
Q Consensus 231 ~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~ 265 (788)
.|....++..+|.+|..+|++++|+.+++++++..
T Consensus 248 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 282 (283)
T 3edt_B 248 SPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRNR 282 (283)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 45667789999999999999999999999998753
No 89
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.73 E-value=2.3e-16 Score=152.01 Aligned_cols=98 Identities=16% Similarity=0.216 Sum_probs=42.1
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC
Q 003891 27 LTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRG 106 (788)
Q Consensus 27 l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g 106 (788)
+..+|..+...|++++|+..|+++++..|.+..++..+|.++...|++++|+.+++++++..|.+..++..+|.++...|
T Consensus 11 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 90 (186)
T 3as5_A 11 YRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQVQ 90 (186)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhc
Confidence 34444444444444444444444444444444444444444444444444444444444444444444444444444444
Q ss_pred CHHHHHHHHHHHHhhCCC
Q 003891 107 DLESAIACYERCLAVSPN 124 (788)
Q Consensus 107 ~~~~A~~~~~~al~~~p~ 124 (788)
++++|+++++++++..|+
T Consensus 91 ~~~~A~~~~~~~~~~~~~ 108 (186)
T 3as5_A 91 KYDLAVPLLIKVAEANPI 108 (186)
T ss_dssp CHHHHHHHHHHHHHHCTT
T ss_pred CHHHHHHHHHHHHhcCcH
Confidence 444444444444433333
No 90
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.73 E-value=4.1e-17 Score=162.41 Aligned_cols=167 Identities=16% Similarity=0.186 Sum_probs=147.6
Q ss_pred HHHhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHH----------------HHHHHHHcCChHHHHHHHHHHHhcCCC
Q 003891 136 LTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYN----------------LGVAYGEMLKFDMAIVFYELAFHFNPH 199 (788)
Q Consensus 136 l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~----------------la~~~~~~g~~~~A~~~~~~al~~~p~ 199 (788)
+...|..+...|++++|+..|+++++.+|+++.+++. +|.++...|++++|+..|+++++.+|+
T Consensus 7 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 86 (208)
T 3urz_A 7 MLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAPN 86 (208)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC
Confidence 4455666677889999999999999999999999999 999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 003891 200 CAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGK--MDAAAEMIEKAIAANPTYAEAYNNLGV 277 (788)
Q Consensus 200 ~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~--~~eA~~~l~kal~~~p~~~~~~~~la~ 277 (788)
+..++.++|.++...|++++|+.+|+++++++|+++.+++++|.+|...|+ .+++...+++++...|. ..+++.+|.
T Consensus 87 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~a~~~~g~ 165 (208)
T 3urz_A 87 NVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKM-QYARYRDGL 165 (208)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCHH-HHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCch-hHHHHHHHH
Confidence 999999999999999999999999999999999999999999999987764 45677788877643332 346788999
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCCh
Q 003891 278 LYRDAGSISLAIDAYEQCLKIDPDSR 303 (788)
Q Consensus 278 ~~~~~g~~~eA~~~~~~al~l~p~~~ 303 (788)
++..+|++++|+.+|+++++++|+..
T Consensus 166 ~~~~~~~~~~A~~~~~~al~l~P~~~ 191 (208)
T 3urz_A 166 SKLFTTRYEKARNSLQKVILRFPSTE 191 (208)
T ss_dssp HHHHHHTHHHHHHHHHHHTTTSCCHH
T ss_pred HHHHccCHHHHHHHHHHHHHhCCCHH
Confidence 99999999999999999999999743
No 91
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.73 E-value=8.9e-18 Score=157.86 Aligned_cols=147 Identities=15% Similarity=0.109 Sum_probs=130.5
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH
Q 003891 172 NLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKM 251 (788)
Q Consensus 172 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 251 (788)
.||.++...|++++|+..+++++..+|+++..++.+|.+|...|++++|+++|+++++++|+++.++..+|.+|...|++
T Consensus 2 ~LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~ 81 (150)
T 4ga2_A 2 PLGSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENT 81 (150)
T ss_dssp -----CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HhHHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCch
Confidence 47888889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH-HHHHHhhCCCChhhHHhHHHHhhhccCCC
Q 003891 252 DAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDA-YEQCLKIDPDSRNAGQNRLLAMNYINEGH 320 (788)
Q Consensus 252 ~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~~eA~~~-~~~al~l~p~~~~a~~~~lla~~~l~~g~ 320 (788)
++|+..|+++++++|+++.+++++|.+|..+|++++|.+. ++++++++|+++.++.. .+..+...|+
T Consensus 82 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l--~~~ll~~~G~ 149 (150)
T 4ga2_A 82 DKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKL--KEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHH--HHHHHHTCCC
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHH--HHHHHHHhCc
Confidence 9999999999999999999999999999999999887765 59999999999887643 3444444443
No 92
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.72 E-value=4.3e-16 Score=156.93 Aligned_cols=207 Identities=13% Similarity=0.094 Sum_probs=120.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHH---HHHH
Q 003891 58 APAYYNLGVVYSELMQYDTALGCYEKAALERPMY---AEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEI---AKNN 131 (788)
Q Consensus 58 ~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~---~~~~ 131 (788)
+..++.+|..++..|++++|+..|+++++..|.+ ..+++.+|.+|...|++++|+..|+++++.+|++.. +++.
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~ 83 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence 4455666666666666666666666666665544 245666666666666666666666666666665542 2333
Q ss_pred HHHHHHHhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 003891 132 MAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIY 211 (788)
Q Consensus 132 la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 211 (788)
++.++..++ . .....+..++..+...|++++|+..|+++++..|++..+...+..+.
T Consensus 84 ~g~~~~~~~-------~----------------~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~ 140 (225)
T 2yhc_A 84 RGLTNMALD-------D----------------SALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLV 140 (225)
T ss_dssp HHHHHHHHH-------C------------------------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHH
T ss_pred HHHHHHhhh-------h----------------hhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHH
Confidence 333333222 1 01112233445555566666777777777766666544332221111
Q ss_pred HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCCHHHH
Q 003891 212 KDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYA---EAYNNLGVLYRDAGSISLA 288 (788)
Q Consensus 212 ~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~---~~~~~la~~~~~~g~~~eA 288 (788)
...+ ........+|.+|...|++++|+..|+++++..|+++ ++++.+|.+|.++|++++|
T Consensus 141 ~~~~-----------------~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A 203 (225)
T 2yhc_A 141 FLKD-----------------RLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQA 203 (225)
T ss_dssp HHHH-----------------HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHH-----------------HHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHH
Confidence 1000 0112335678888888888888888888888888875 6788888888888888888
Q ss_pred HHHHHHHHhhCCCChh
Q 003891 289 IDAYEQCLKIDPDSRN 304 (788)
Q Consensus 289 ~~~~~~al~l~p~~~~ 304 (788)
++.++++....|++.+
T Consensus 204 ~~~~~~l~~~~~~~~~ 219 (225)
T 2yhc_A 204 EKVAKIIAANSSNTLE 219 (225)
T ss_dssp HHHHHHHHHCCSCCCC
T ss_pred HHHHHHHHhhCCCchh
Confidence 8888888888877644
No 93
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.71 E-value=4.7e-15 Score=176.64 Aligned_cols=266 Identities=12% Similarity=0.063 Sum_probs=149.8
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHh----------------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 003891 30 LGTSLKLAGNTQDGIQKYYEALKI----------------------DPHYAPAYYNLGVVYSELMQYDTALGCYEKAALE 87 (788)
Q Consensus 30 lg~~~~~~g~~~~A~~~~~~al~~----------------------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~ 87 (788)
.|.++...|.+++|..+|+++-.. ..+.+.+|+.+|.++...|++++|+..|.++
T Consensus 1055 IA~Iai~lglyEEAf~IYkKa~~~~~A~~VLie~i~nldrAiE~Aervn~p~vWsqLAKAql~~G~~kEAIdsYiKA--- 1131 (1630)
T 1xi4_A 1055 IANIAISNELFEEAFAIFRKFDVNTSAVQVLIEHIGNLDRAYEFAERCNEPAVWSQLAKAQLQKGMVKEAIDSYIKA--- 1131 (1630)
T ss_pred HHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHHHHHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCHHHHHHHHHhc---
Confidence 488888899999999998886210 1233444555555555555555555555443
Q ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHhCCCCH
Q 003891 88 RPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYA 167 (788)
Q Consensus 88 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~ 167 (788)
+++..|..+|.++.+.|++++|+++|+.+.+..++.. ... .+|..|.+.+++++ ++.|. ...+.
T Consensus 1132 --dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~-Idt-------~LafaYAKl~rlee-le~fI-----~~~n~ 1195 (1630)
T 1xi4_A 1132 --DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESY-VET-------ELIFALAKTNRLAE-LEEFI-----NGPNN 1195 (1630)
T ss_pred --CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccccc-ccH-------HHHHHHHhhcCHHH-HHHHH-----hCCCH
Confidence 4444555555555555555555555555554443211 011 12222333334442 22221 11122
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 003891 168 DAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTV 247 (788)
Q Consensus 168 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~ 247 (788)
..+..+|..+...|+|++|..+|.++ ..|..++.++.++|++++|+++++++ .+..+|...+.++..
T Consensus 1196 ad~~~iGd~le~eg~YeeA~~~Y~kA--------~ny~rLA~tLvkLge~q~AIEaarKA-----~n~~aWkev~~acve 1262 (1630)
T 1xi4_A 1196 AHIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVD 1262 (1630)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhh--------hHHHHHHHHHHHhCCHHHHHHHHHHh-----CCHHHHHHHHHHHhh
Confidence 34445666666666666666666553 35555666666666666666666655 334555566666666
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhhHHhHHHHhhhccCCCchHHHHH
Q 003891 248 QGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEA 327 (788)
Q Consensus 248 ~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~a~~~~lla~~~l~~g~~~~~~~~ 327 (788)
.|++..|..+... +.. +++.+..++..|...|.+++|+.++++++.+++.+...+..+...... -..++..+.
T Consensus 1263 ~~Ef~LA~~cgl~-Iiv---~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaK---y~peklmEh 1335 (1630)
T 1xi4_A 1263 GKEFRLAQMCGLH-IVV---HADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSK---FKPQKMREH 1335 (1630)
T ss_pred hhHHHHHHHHHHh-hhc---CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHh---CCHHHHHHH
Confidence 6666666555543 222 355666889999999999999999999999999888877664333322 234555554
Q ss_pred HHHHHHH
Q 003891 328 HRDWGKR 334 (788)
Q Consensus 328 ~~~~~~~ 334 (788)
.+-+..+
T Consensus 1336 lk~f~~r 1342 (1630)
T 1xi4_A 1336 LELFWSR 1342 (1630)
T ss_pred HHHHHHh
Confidence 4444443
No 94
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=99.71 E-value=4.3e-15 Score=156.41 Aligned_cols=206 Identities=7% Similarity=0.053 Sum_probs=142.6
Q ss_pred HcCCHH-HHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhcCC
Q 003891 70 ELMQYD-TALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGD 148 (788)
Q Consensus 70 ~~g~~~-~A~~~~~kal~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~g~ 148 (788)
..|+++ +|+.++.+++..+|++..+|+..+.++...+.. ..|+ .....
T Consensus 41 ~~~e~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~------------~~~~-------------------~~~~~ 89 (331)
T 3dss_A 41 QAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETE------------KSPE-------------------ESAAL 89 (331)
T ss_dssp HTTCCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHH------------SCHH-------------------HHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhccc------------ccch-------------------hhhHH
Confidence 344443 677777777777777777777777766554431 0000 00123
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC--hHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC-HHHHHHHHH
Q 003891 149 INQGVAYYKKALYYNWHYADAMYNLGVAYGEMLK--FDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDN-LDKAVECYQ 225 (788)
Q Consensus 149 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~--~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~-~~eA~~~~~ 225 (788)
+++++.++++++..+|++..+|...+.++...++ +++++.++.++++.+|.+..+|...+.++...|. ++++++++.
T Consensus 90 l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~ 169 (331)
T 3dss_A 90 VKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTD 169 (331)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHH
Confidence 5566666777777777777777777777666663 6677777777777777777777777777777776 467777777
Q ss_pred HHHhhCCCCHHHHHHHHHHHHHc--------------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc---------
Q 003891 226 MALSIKPNFSQSLNNLGVVYTVQ--------------GKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDA--------- 282 (788)
Q Consensus 226 ~al~~~p~~~~~~~~la~~~~~~--------------g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~--------- 282 (788)
++++.+|.+..+|..++.++... +.++++++++++++..+|++..+|+.+..++...
T Consensus 170 ~~I~~~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~ 249 (331)
T 3dss_A 170 SLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVE 249 (331)
T ss_dssp HHHHHCSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHH
T ss_pred HHHHHCCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchH
Confidence 77777777777777777776665 4578888888888888888888887665555544
Q ss_pred --CCHHHHHHHHHHHHhhCCCChhhH
Q 003891 283 --GSISLAIDAYEQCLKIDPDSRNAG 306 (788)
Q Consensus 283 --g~~~eA~~~~~~al~l~p~~~~a~ 306 (788)
+.++++++++++++++.|++.-..
T Consensus 250 ~~~~l~~el~~~~elle~~pd~~w~l 275 (331)
T 3dss_A 250 KSTVLQSELESCKELQELEPENKWCL 275 (331)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHHHHHHHHhhCcccchHH
Confidence 468999999999999999985443
No 95
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.69 E-value=1.6e-15 Score=152.82 Aligned_cols=187 Identities=12% Similarity=0.049 Sum_probs=154.9
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---HHHHH
Q 003891 25 IVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHY---APAYYNLGVVYSELMQYDTALGCYEKAALERPMYAE---AYCNM 98 (788)
Q Consensus 25 ~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~---~~~~l 98 (788)
..++.+|..++..|++++|+..|+++++..|.+ ..+++.+|.++...|++++|+..|+++++.+|++.. +++.+
T Consensus 5 ~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~ 84 (225)
T 2yhc_A 5 NEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMR 84 (225)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHH
Confidence 457888999999999999999999999999876 479999999999999999999999999999998754 88999
Q ss_pred HHHHHH------------------CCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHH
Q 003891 99 GVIYKN------------------RGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKAL 160 (788)
Q Consensus 99 a~~~~~------------------~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al 160 (788)
|.++.. .|++++|+..|+++++..|++..+.... ..++.+. .
T Consensus 85 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~----~~l~~~~-------~--------- 144 (225)
T 2yhc_A 85 GLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDAT----KRLVFLK-------D--------- 144 (225)
T ss_dssp HHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHH----HHHHHHH-------H---------
T ss_pred HHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHH----HHHHHHH-------H---------
Confidence 999886 6799999999999999999987543221 1111110 0
Q ss_pred HhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Q 003891 161 YYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCA---EACNNLGVIYKDRDNLDKAVECYQMALSIKPNFS 235 (788)
Q Consensus 161 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~ 235 (788)
........+|.+|...|++++|+..|+++++..|+++ .++..+|.++.++|++++|++.++++....|++.
T Consensus 145 ----~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~ 218 (225)
T 2yhc_A 145 ----RLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTL 218 (225)
T ss_dssp ----HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCC
T ss_pred ----HHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCch
Confidence 0112345778899999999999999999999988875 6789999999999999999999998888877653
No 96
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.69 E-value=2.9e-16 Score=166.30 Aligned_cols=204 Identities=21% Similarity=0.174 Sum_probs=125.3
Q ss_pred cCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Q 003891 37 AGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSE-LMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACY 115 (788)
Q Consensus 37 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~-~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 115 (788)
.|++++|.++++++.+..+.. ++. .+++++|..+|.++ |.+|...|++++|+.+|
T Consensus 4 ~~~~~eA~~~~~~a~k~~~~~----------~~~~~~~~~~A~~~~~~a--------------~~~~~~~g~~~~A~~~~ 59 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLKTS----------FMKWKPDYDSAASEYAKA--------------AVAFKNAKQLEQAKDAY 59 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHCCC----------SSSCSCCHHHHHHHHHHH--------------HHHHHHTTCHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHcccc----------ccCCCCCHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHH
Confidence 477888999998888776642 111 57888888888876 56788889999999999
Q ss_pred HHHHhhCCCcHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCChHHHHHH
Q 003891 116 ERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHY------ADAMYNLGVAYGEMLKFDMAIVF 189 (788)
Q Consensus 116 ~~al~~~p~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~ 189 (788)
++++++.+.... ....+.++..+|.++...|++++|+.+|++++++.+.. ..++.++|.+|.. |++++|+.+
T Consensus 60 ~~al~~~~~~~~-~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~ 137 (307)
T 2ifu_A 60 LQEAEAHANNRS-LFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHL 137 (307)
T ss_dssp HHHHHHHHHTTC-HHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHH
T ss_pred HHHHHHHHHcCC-HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHH
Confidence 998887554321 22345566677777777777777777777777653221 2345556666655 666666666
Q ss_pred HHHHHhcCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHcCCHHHHHHH
Q 003891 190 YELAFHFNPHC------AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNF------SQSLNNLGVVYTVQGKMDAAAEM 257 (788)
Q Consensus 190 ~~~al~~~p~~------~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~eA~~~ 257 (788)
|++++++.+.. ..++.++|.++..+|++++|+.+|++++++.+.+ ...+..+|.++..+|++++|+.+
T Consensus 138 ~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~ 217 (307)
T 2ifu_A 138 YQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKC 217 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 66666554321 3445555555555555555555555555543322 12444455555555555555555
Q ss_pred HHHHHHhCCC
Q 003891 258 IEKAIAANPT 267 (788)
Q Consensus 258 l~kal~~~p~ 267 (788)
|++++ ++|.
T Consensus 218 ~~~al-~~p~ 226 (307)
T 2ifu_A 218 VRESY-SIPG 226 (307)
T ss_dssp HHHHT-TSTT
T ss_pred HHHHh-CCCC
Confidence 55555 5443
No 97
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.69 E-value=8.9e-15 Score=154.57 Aligned_cols=190 Identities=11% Similarity=0.039 Sum_probs=157.2
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC
Q 003891 27 LTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELM-QYDTALGCYEKAALERPMYAEAYCNMGVIYKNR 105 (788)
Q Consensus 27 l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g-~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~ 105 (788)
+..........+..++|++++.+++..+|++..+|+..+.++...+ .+++++.++++++..+|++..+|...+.++...
T Consensus 57 ~~~~r~~~~~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l 136 (349)
T 3q7a_A 57 MDYFRAIAAKEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRI 136 (349)
T ss_dssp HHHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHh
Confidence 4444445555667789999999999999999999999999999999 599999999999999999999999999999998
Q ss_pred -C-CHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhh-hcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 003891 106 -G-DLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVK-LEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLK 182 (788)
Q Consensus 106 -g-~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 182 (788)
+ ++++++++++++++.+|++..+|.....++..++..-. ....+.+++++++++++.+|.+..+|...+.++...++
T Consensus 137 ~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l~~ 216 (349)
T 3q7a_A 137 SPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSRPG 216 (349)
T ss_dssp CCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTSTT
T ss_pred cCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccc
Confidence 7 89999999999999999999999999888888763210 00113478888888888888888888888888887776
Q ss_pred -------hHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC
Q 003891 183 -------FDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDN 216 (788)
Q Consensus 183 -------~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 216 (788)
++++++++++++..+|++..+|+.+..++...|+
T Consensus 217 ~~~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 217 AETSSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred cccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCC
Confidence 5777777777777777777777777777666554
No 98
>3oy2_A Glycosyltransferase B736L; rossmann fold, GDP-mannose, sugar, VIRU proteins, viral protein,transferase; 2.31A {Paramecium bursaria chlorella virus NY} PDB: 3oy7_A*
Probab=99.68 E-value=3.3e-16 Score=173.16 Aligned_cols=338 Identities=11% Similarity=0.067 Sum_probs=211.4
Q ss_pred eEeeccCCccc-ChhHHhhhhhhcccCCCceEEEEEeccccCCh-----h--hHHHHHHHhhhCCeEEEccCCCHHHHHH
Q 003891 356 VIGYVSPDYFT-HSVSYFIEAPLVYHDYQNYKVVVYSAVVKADA-----K--TIRFREKVMKKGGIWRDIYGIDEKKVAA 427 (788)
Q Consensus 356 riGyvS~df~~-H~v~~~~~~~l~~~dr~~fev~~Y~~~~~~D~-----~--t~~~r~~~~~~~~~~~~~~~~~~~~~a~ 427 (788)
||.++++.+.. --+..+...+...+.+. .+|.+++....... . ........ . +.....+....+.+
T Consensus 2 kI~~v~~~~p~~gG~~~~~~~l~~~L~~~-~~V~v~~~~~~g~~~~~~~~~~~~~~~~~~----~-~~~~~~~~~~~l~~ 75 (413)
T 3oy2_A 2 KLIIVGAHSSVPSGYGRVMRAIVPRISKA-HEVIVFGIHAFGRSVHANIEEFDAQTAEHV----R-GLNEQGFYYSGLSE 75 (413)
T ss_dssp EEEEEEECTTCCSHHHHHHHHHHHHHTTT-SEEEEEEESCCSCCSCSSSEEEEHHHHHHH----T-TCCSTTCCHHHHHH
T ss_pred eEEEecCCCCCCCCHHHHHHHHHHHHHhc-CCeEEEeecCCCcccccccccCCccccccc----c-ccccccchHHHHHH
Confidence 57777654421 12345555566666655 77877764332100 0 11111111 1 11112445567899
Q ss_pred HHHhCCCcEEEeCCCCCC-CCcccccccCCCCeE-EecccCCCCC-------CCCC--ccEEEecCCCCCcCccCCC-cc
Q 003891 428 MVREDKIDILVELTGHTA-NNKLGMMACQPAPVQ-VTWIGYPNTT-------GLPT--IDYRITDSLADPPETKQKH-VE 495 (788)
Q Consensus 428 ~i~~d~idilvdl~g~t~-~~~~~~~a~r~Apvq-~~~~g~~~tt-------g~~~--~Dy~i~d~~~~p~~~~~~~-~e 495 (788)
.|+..++||++--..... ......+...|-... +.++...... -+.. +|.+|+-.-..-....... .+
T Consensus 76 ~l~~~~~Div~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~S~~~~~~~~~~~~~~ 155 (413)
T 3oy2_A 76 FIDVHKPDIVMIYNDPIVIGNYLLAMGKCSHRTKIVLYVDLVSKNIRENLWWIFSHPKVVGVMAMSKCWISDICNYGCKV 155 (413)
T ss_dssp HHHHHCCSEEEEEECHHHHHHHHHHGGGCCSCCEEEEEECCCSBSCCGGGGGGGGCTTEEEEEESSTHHHHHHHHTTCCS
T ss_pred HHHhcCCCEEEEcchHHHHHHHHHHhccCCCCCceeeeccccchhhHHHHHHHHhccCCceEEEcCHHHHHHHHHcCCCC
Confidence 999999999974310000 000000111111111 1111111111 1123 3376654321111111221 46
Q ss_pred ceEEcCCCccccCCCCCCCCCCCCCCCCC--CCeEEEecCCC--CcCCHHHHHHHHHHHhHcCCcEEEEecCCCCC--HH
Q 003891 496 ELIRLPECFLCYTPSPEAGPVCPTPALTN--GFITFGSFNNL--AKITPKVLQVWARILCAVPNSRLVVKCKPFCC--DS 569 (788)
Q Consensus 496 ~l~~lp~~~~~~~~~~~~~~~~~~~~~~~--~~~~f~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~--~~ 569 (788)
++..+|+.. .+... ...+...++++ +.++|++++++ .|..+.++++|.++.+..|+.+|+++|.+... ..
T Consensus 156 ~~~vi~ngv---d~~~~-~~~~~~~~~~~~~~~~~il~vGr~~~~Kg~~~li~a~~~l~~~~~~~~l~ivG~g~~~~~~~ 231 (413)
T 3oy2_A 156 PINIVSHFV---DTKTI-YDARKLVGLSEYNDDVLFLNMNRNTARKRLDIYVLAAARFISKYPDAKVRFLCNSHHESKFD 231 (413)
T ss_dssp CEEECCCCC---CCCCC-TTHHHHTTCGGGTTSEEEECCSCSSGGGTHHHHHHHHHHHHHHCTTCCEEEEEECCTTCSCC
T ss_pred ceEEeCCCC---CHHHH-HHHHHhcCCCcccCceEEEEcCCCchhcCcHHHHHHHHHHHHhCCCcEEEEEeCCcccchhh
Confidence 777777642 11111 11222345555 78899999987 99999999999999999999999999876321 12
Q ss_pred HHHHHHHHHHHcCCCCCc-------EEEcCCcCCcHHHHHhcccccEeecCCCC-CCchhHHHHhhhCCceeecCCCccC
Q 003891 570 VRHRFLSTLEQLGLESLR-------VDLLPLILLNHDHMQAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHA 641 (788)
Q Consensus 570 ~~~~l~~~~~~~gi~~~r-------v~~~~~~~~~~~~~~~~~~~Dv~Ld~~~~-~g~~t~~eal~~GvPvvt~~g~~~~ 641 (788)
....+++.+++.|++ ++ +.|.|.++ .++....|+.+|+++-|+.+ +.|.+++|||++|+|||+
T Consensus 232 l~~~~~~~~~~~~l~-~~v~~l~~vv~~~g~~~-~~~~~~~~~~adv~v~pS~~E~~~~~~lEAma~G~PvI~------- 302 (413)
T 3oy2_A 232 LHSIALRELVASGVD-NVFTHLNKIMINRTVLT-DERVDMMYNACDVIVNCSSGEGFGLCSAEGAVLGKPLII------- 302 (413)
T ss_dssp HHHHHHHHHHHHTCS-CHHHHHTTEEEECSCCC-HHHHHHHHHHCSEEEECCSCCSSCHHHHHHHTTTCCEEE-------
T ss_pred HHHHHHHHHHHcCcc-cccccccceeeccCcCC-HHHHHHHHHhCCEEEeCCCcCCCCcHHHHHHHcCCCEEE-------
Confidence 458888889999998 76 78889887 68899999999999999977 779999999999999998
Q ss_pred ccchh--HHHhh-----------------hCCccccc-CCHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCCCCChHHH
Q 003891 642 HNVGV--SLLTK-----------------VGLKHLIA-KNEDEYVQLALQLASDVTALANLRMSLRDLMSKSPVCDGQNF 701 (788)
Q Consensus 642 ~r~~~--~~l~~-----------------~gl~~~ia-~~~~~y~~~a~~l~~d~~~~~~~r~~~~~~~~~~~~~~~~~~ 701 (788)
+++++ .++.. .|+.+++. .|++++++.. ++..|++.+++++++.++.+.+ .|+++.+
T Consensus 303 s~~~g~~e~v~~~~~~~i~~~~~~~~~~~~G~~gl~~~~d~~~la~~i-~l~~~~~~~~~~~~~a~~~~~~--~fs~~~~ 379 (413)
T 3oy2_A 303 SAVGGADDYFSGDCVYKIKPSAWISVDDRDGIGGIEGIIDVDDLVEAF-TFFKDEKNRKEYGKRVQDFVKT--KPTWDDI 379 (413)
T ss_dssp ECCHHHHHHSCTTTSEEECCCEEEECTTTCSSCCEEEECCHHHHHHHH-HHTTSHHHHHHHHHHHHHHHTT--SCCHHHH
T ss_pred cCCCChHHHHccCcccccccccccccccccCcceeeCCCCHHHHHHHH-HHhcCHHHHHHHHHHHHHHHHH--hCCHHHH
Confidence 44442 11110 02222333 5899999999 9999999999999999988653 4999999
Q ss_pred HHHHHHHHHHHHHH
Q 003891 702 ALGLESTYRNMWHR 715 (788)
Q Consensus 702 ~~~~e~~~~~~~~~ 715 (788)
++++++.|+++.++
T Consensus 380 ~~~~~~~~~~~~~~ 393 (413)
T 3oy2_A 380 SSDIIDFFNSLLRV 393 (413)
T ss_dssp HHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999998764
No 99
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.68 E-value=4.5e-16 Score=141.39 Aligned_cols=113 Identities=21% Similarity=0.284 Sum_probs=64.7
Q ss_pred cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 003891 196 FNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNL 275 (788)
Q Consensus 196 ~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~l 275 (788)
++|+.+..+.++|..+++.|++++|+.+|+++++.+|.++.++.++|.++..+|++++|+..++++++++|+++.+++.+
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l 87 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRK 87 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence 45555555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCChhhHHh
Q 003891 276 GVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQN 308 (788)
Q Consensus 276 a~~~~~~g~~~eA~~~~~~al~l~p~~~~a~~~ 308 (788)
|.++..+|++++|++.|+++++++|++..+..+
T Consensus 88 g~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~ 120 (126)
T 4gco_A 88 AACLVAMREWSKAQRAYEDALQVDPSNEEAREG 120 (126)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHH
Confidence 555555555555555555555555555555444
No 100
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.67 E-value=6.6e-16 Score=140.28 Aligned_cols=122 Identities=16% Similarity=0.189 Sum_probs=116.0
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH
Q 003891 158 KALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQS 237 (788)
Q Consensus 158 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~ 237 (788)
++..++|+..+.+.++|..++..|++++|++.|+++++.+|.++.++.++|.++..+|++++|+..|+++++++|++..+
T Consensus 4 r~a~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a 83 (126)
T 4gco_A 4 RLAYINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKG 83 (126)
T ss_dssp ---CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHH
Confidence 44567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 003891 238 LNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLY 279 (788)
Q Consensus 238 ~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~ 279 (788)
++++|.++..+|++++|++.|+++++++|++.+++..++.++
T Consensus 84 ~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~l 125 (126)
T 4gco_A 84 YIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNCL 125 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHC
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHhc
Confidence 999999999999999999999999999999999999998874
No 101
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.67 E-value=5.6e-16 Score=164.15 Aligned_cols=205 Identities=17% Similarity=0.140 Sum_probs=171.6
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-CCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhcCC
Q 003891 70 ELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKN-RGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGD 148 (788)
Q Consensus 70 ~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~g~ 148 (788)
..|++++|.++++++.+..+.. ++. .+++++|..+|+++ +.++...|+
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~~~----------~~~~~~~~~~A~~~~~~a---------------------~~~~~~~g~ 51 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLKTS----------FMKWKPDYDSAASEYAKA---------------------AVAFKNAKQ 51 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHCCC----------SSSCSCCHHHHHHHHHHH---------------------HHHHHHTTC
T ss_pred ccchHHHHHHHHHHHHHHcccc----------ccCCCCCHHHHHHHHHHH---------------------HHHHHHcCC
Confidence 3578899999999998876642 122 58899999998876 234445789
Q ss_pred HHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC------CHHHHHHHHHHHHHcCC
Q 003891 149 INQGVAYYKKALYYNWHY------ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPH------CAEACNNLGVIYKDRDN 216 (788)
Q Consensus 149 ~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~g~ 216 (788)
+++|+.+|.+++++.+.. ..++.++|.+|..+|++++|+.+|++++++.+. ...++.++|.+|.. |+
T Consensus 52 ~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~ 130 (307)
T 2ifu_A 52 LEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LD 130 (307)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TC
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CC
Confidence 999999999999886532 457889999999999999999999999987432 25688999999999 99
Q ss_pred HHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCC
Q 003891 217 LDKAVECYQMALSIKPNF------SQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTY------AEAYNNLGVLYRDAGS 284 (788)
Q Consensus 217 ~~eA~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~------~~~~~~la~~~~~~g~ 284 (788)
+++|+.+|++++++.+.. ..++.++|.+|..+|++++|+.+|++++++.+++ ..++..+|.++..+|+
T Consensus 131 ~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~ 210 (307)
T 2ifu_A 131 LSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRAD 210 (307)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCC
Confidence 999999999999987643 5689999999999999999999999999986543 3478889999999999
Q ss_pred HHHHHHHHHHHHhhCCCChhhHH
Q 003891 285 ISLAIDAYEQCLKIDPDSRNAGQ 307 (788)
Q Consensus 285 ~~eA~~~~~~al~l~p~~~~a~~ 307 (788)
+++|+.+|++++ ++|+......
T Consensus 211 ~~~A~~~~~~al-~~p~~~~~~e 232 (307)
T 2ifu_A 211 YVAAQKCVRESY-SIPGFSGSED 232 (307)
T ss_dssp HHHHHHHHHHHT-TSTTSTTSHH
T ss_pred HHHHHHHHHHHh-CCCCCCCCHH
Confidence 999999999999 9998765543
No 102
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.67 E-value=2e-14 Score=171.39 Aligned_cols=281 Identities=12% Similarity=0.158 Sum_probs=224.1
Q ss_pred HHHHHHHHHcCCCChhhHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 003891 3 VASYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYE 82 (788)
Q Consensus 3 i~~~~kaL~~~P~~~~a~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 82 (788)
+..+++|++..+.- ....+|+.+|.++...|++++|+..|.++ +++..|..+|.++.+.|++++|+++|.
T Consensus 1089 i~nldrAiE~Aerv-----n~p~vWsqLAKAql~~G~~kEAIdsYiKA-----dD~say~eVa~~~~~lGkyEEAIeyL~ 1158 (1630)
T 1xi4_A 1089 IGNLDRAYEFAERC-----NEPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQ 1158 (1630)
T ss_pred HhhHHHHHHHHHhc-----CCHHHHHHHHHHHHhCCCHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 44556665544211 11345888999999999999999999886 789999999999999999999999999
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHh
Q 003891 83 KAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYY 162 (788)
Q Consensus 83 kal~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~ 162 (788)
.+.+..++ +.+...+|.+|.+++++++ ++.|. ..++. . .+..+|..+...|++++|+.+|.++
T Consensus 1159 mArk~~~e-~~Idt~LafaYAKl~rlee-le~fI----~~~n~-a-------d~~~iGd~le~eg~YeeA~~~Y~kA--- 1221 (1630)
T 1xi4_A 1159 MARKKARE-SYVETELIFALAKTNRLAE-LEEFI----NGPNN-A-------HIQQVGDRCYDEKMYDAAKLLYNNV--- 1221 (1630)
T ss_pred HHHhhccc-ccccHHHHHHHHhhcCHHH-HHHHH----hCCCH-H-------HHHHHHHHHHhcCCHHHHHHHHHhh---
Confidence 99988744 3344469999999999885 44442 12322 2 2335677777788999999999996
Q ss_pred CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 003891 163 NWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLG 242 (788)
Q Consensus 163 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la 242 (788)
..|..++.++.++|++++|++.++++ .+..+|...+.++...|++..|..+... +..+ ++.+..++
T Consensus 1222 -----~ny~rLA~tLvkLge~q~AIEaarKA-----~n~~aWkev~~acve~~Ef~LA~~cgl~-Iiv~---~deLeeli 1287 (1630)
T 1xi4_A 1222 -----SNFGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVDGKEFRLAQMCGLH-IVVH---ADELEELI 1287 (1630)
T ss_pred -----hHHHHHHHHHHHhCCHHHHHHHHHHh-----CCHHHHHHHHHHHhhhhHHHHHHHHHHh-hhcC---HHHHHHHH
Confidence 47899999999999999999999999 5578999999999999999999998875 4333 55666899
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHhhCC-----CChhhHHhHHHHhhh
Q 003891 243 VVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDA--GSISLAIDAYEQCLKIDP-----DSRNAGQNRLLAMNY 315 (788)
Q Consensus 243 ~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~--g~~~eA~~~~~~al~l~p-----~~~~a~~~~lla~~~ 315 (788)
..|...|.+++|+.++++++.+++.+...+..++.+|.+- ++..+++++|...+.+.| ++...|.. +...|
T Consensus 1288 ~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~~rini~k~~r~~e~~~lW~e--lv~LY 1365 (1630)
T 1xi4_A 1288 NYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAE--LVFLY 1365 (1630)
T ss_pred HHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcccchHhHHHHHHHHHHH--HHHHH
Confidence 9999999999999999999999999999998899888764 577889999998888776 44444444 45666
Q ss_pred ccCCCchHHHH
Q 003891 316 INEGHDDKLFE 326 (788)
Q Consensus 316 l~~g~~~~~~~ 326 (788)
...++.+++..
T Consensus 1366 ~~~~e~dnA~~ 1376 (1630)
T 1xi4_A 1366 DKYEEYDNAII 1376 (1630)
T ss_pred HhcccHHHHHH
Confidence 67777766653
No 103
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.66 E-value=8.4e-15 Score=154.75 Aligned_cols=244 Identities=10% Similarity=0.007 Sum_probs=206.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC-CHHHHHHHHHHHHhhCCCcHHHHHHHHHHHH
Q 003891 59 PAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRG-DLESAIACYERCLAVSPNFEIAKNNMAIALT 137 (788)
Q Consensus 59 ~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~la~~l~ 137 (788)
.++..+..+....+..++|++++++++.++|++..+|+..+.++...+ .++++++.+++++..+|++..+|.....++.
T Consensus 55 ~~~~~~r~~~~~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~ 134 (349)
T 3q7a_A 55 DAMDYFRAIAAKEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLD 134 (349)
T ss_dssp HHHHHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 344444445555566689999999999999999999999999999999 5999999999999999999999999888887
Q ss_pred HhhhhhhhcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChH--------HHHHHHHHHHhcCCCCHHHHHHHH
Q 003891 138 DLGTKVKLEG-DINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFD--------MAIVFYELAFHFNPHCAEACNNLG 208 (788)
Q Consensus 138 ~lg~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~--------~A~~~~~~al~~~p~~~~~~~~la 208 (788)
.+. + +++++++++.++++.+|.+..+|...+.++...+.++ +++++++++++.+|.+..+|+..+
T Consensus 135 ~l~------~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~ 208 (349)
T 3q7a_A 135 RIS------PQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRW 208 (349)
T ss_dssp HHC------CSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred Hhc------CCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 761 3 6789999999999999999999999999999988888 999999999999999999999999
Q ss_pred HHHHHcCC-------HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH--------------------HHHHHHHHHH
Q 003891 209 VIYKDRDN-------LDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKM--------------------DAAAEMIEKA 261 (788)
Q Consensus 209 ~~~~~~g~-------~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~--------------------~eA~~~l~ka 261 (788)
.++...++ ++++++++++++..+|++..+|+.+..++...|+. .+-.+...+.
T Consensus 209 ~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (349)
T 3q7a_A 209 YLRVSRPGAETSSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPM 288 (349)
T ss_dssp HHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCC
T ss_pred HHHHhccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHH
Confidence 99999987 79999999999999999999999999999887764 2223333333
Q ss_pred HHhC------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-hhCCCChhhHHh
Q 003891 262 IAAN------PTYAEAYNNLGVLYRDAGSISLAIDAYEQCL-KIDPDSRNAGQN 308 (788)
Q Consensus 262 l~~~------p~~~~~~~~la~~~~~~g~~~eA~~~~~~al-~l~p~~~~a~~~ 308 (788)
+... +..+.++..|+.+|.+.|+.++|.++++... +.||-....+..
T Consensus 289 ~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dpir~~yw~~ 342 (349)
T 3q7a_A 289 PSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQMRAGYWEF 342 (349)
T ss_dssp CC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhChHHHHHHHH
Confidence 2222 4668899999999999999999999999987 678865555544
No 104
>2x6q_A Trehalose-synthase TRET; biosynthetic protein; 2.20A {Pyrococcus horikoshii} PDB: 2x6r_A 2xa1_A 2xa2_A* 2xa9_A* 2xmp_A*
Probab=99.66 E-value=4.2e-15 Score=164.53 Aligned_cols=337 Identities=12% Similarity=0.093 Sum_probs=214.4
Q ss_pred CCeeEeeccCCcccChhHHhhhhhhcccCCCceEEEEEeccccCChh--hHHHHHHHhhhCCeEEEccCCCH--------
Q 003891 353 RPLVIGYVSPDYFTHSVSYFIEAPLVYHDYQNYKVVVYSAVVKADAK--TIRFREKVMKKGGIWRDIYGIDE-------- 422 (788)
Q Consensus 353 ~~lriGyvS~df~~H~v~~~~~~~l~~~dr~~fev~~Y~~~~~~D~~--t~~~r~~~~~~~~~~~~~~~~~~-------- 422 (788)
++.||.+++..+..--+...+..+...+.+.+++|.+++.....+.. ...+..... +. . ...+..
T Consensus 39 ~~mkIl~v~~~~~~GG~~~~~~~l~~~L~~~G~~v~v~~~~~~~~~~~~~~~~~~~~~---~~-~-~~~~~~~~~~~~~~ 113 (416)
T 2x6q_A 39 KGRSFVHVNSTSFGGGVAEILHSLVPLLRSIGIEARWFVIEGPTEFFNVTKTFHNALQ---GN-E-SLKLTEEMKELYLN 113 (416)
T ss_dssp TTCEEEEEESCSSSSTHHHHHHHHHHHHHHTTCEEEEEECCCCHHHHHHHHHHHHHHT---TC-C-SCCCCHHHHHHHHH
T ss_pred hccEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCeEEEEEccCCcchhhhhcccceeec---cc-c-cccccHHHHHHHHH
Confidence 44788888877643334445555556666667888877654332111 111111111 00 0 111111
Q ss_pred --HHHHHHHHhCCCcEEEeCCCCCCCCcccccccCCCCeEEecccCCCCCC----------CCCccEEEecCCCCCcCcc
Q 003891 423 --KKVAAMVREDKIDILVELTGHTANNKLGMMACQPAPVQVTWIGYPNTTG----------LPTIDYRITDSLADPPETK 490 (788)
Q Consensus 423 --~~~a~~i~~d~idilvdl~g~t~~~~~~~~a~r~Apvq~~~~g~~~ttg----------~~~~Dy~i~d~~~~p~~~~ 490 (788)
..+.+.|+..++||++--+.+.. .+..++.+-.|+-++.-+...... +...|.+|.. ......
T Consensus 114 ~~~~~~~~l~~~~~Dvv~~~~~~~~--~~~~~~~~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~i~~---~s~~~~ 188 (416)
T 2x6q_A 114 VNRENSKFIDLSSFDYVLVHDPQPA--ALIEFYEKKSPWLWRCHIDLSSPNREFWEFLRRFVEKYDRYIFH---LPEYVQ 188 (416)
T ss_dssp HHHHHHHSSCGGGSSEEEEESSTTG--GGGGGSCCCSCEEEECCSCCSSCCHHHHHHHHHHHTTSSEEEES---SGGGSC
T ss_pred HHHHHHHHHhhcCCCEEEEeccchh--hHHHHHHhcCCEEEEEccccCCccHHHHHHHHHHHHhCCEEEEe---chHHHH
Confidence 12344566679999975433322 122222233676555444322111 1234554421 112222
Q ss_pred CCCc-cceEEcCCCccccCCCCCCC-CC--------CCCCCCCCCCeEEEecCCC--CcCCHHHHHHHHHHHhHcCCcEE
Q 003891 491 QKHV-EELIRLPECFLCYTPSPEAG-PV--------CPTPALTNGFITFGSFNNL--AKITPKVLQVWARILCAVPNSRL 558 (788)
Q Consensus 491 ~~~~-e~l~~lp~~~~~~~~~~~~~-~~--------~~~~~~~~~~~~f~~~~~~--~K~~~~~~~~~~~il~~~p~~~l 558 (788)
..+. +++..+|+.. .+....+ +. +...+++++.+++++++++ .|..+.++++|.++.+..|+.+|
T Consensus 189 ~~~~~~~~~vi~ngv---d~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~vGrl~~~Kg~~~li~a~~~l~~~~~~~~l 265 (416)
T 2x6q_A 189 PELDRNKAVIMPPSI---DPLSEKNVELKQTEILRILERFDVDPEKPIITQVSRFDPWKGIFDVIEIYRKVKEKIPGVQL 265 (416)
T ss_dssp TTSCTTTEEECCCCB---CTTSTTTSCCCHHHHHHHHHHTTCCTTSCEEEEECCCCTTSCHHHHHHHHHHHHHHCTTCEE
T ss_pred hhCCccceEEeCCCC---ChhhhcccccChhhHHHHHHHhCCCCCCcEEEEEeccccccCHHHHHHHHHHHHHhCCCeEE
Confidence 3333 6777888642 1111100 00 1123456677788888876 88999999999999999999999
Q ss_pred EEecCCCCC-HHHHHHHHHHHHHcCCCCCcEEEcCCcCC--cHHHHHhcccccEeecCCCC-CCchhHHHHhhhCCceee
Q 003891 559 VVKCKPFCC-DSVRHRFLSTLEQLGLESLRVDLLPLILL--NHDHMQAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVT 634 (788)
Q Consensus 559 ~l~~~~~~~-~~~~~~l~~~~~~~gi~~~rv~~~~~~~~--~~~~~~~~~~~Dv~Ld~~~~-~g~~t~~eal~~GvPvvt 634 (788)
+++|.+... +.....+++..++.|+. ++|.|+|.++. .++....|+.+|+++-|+.+ +.|++++|||++|+|||+
T Consensus 266 ~i~G~g~~~~~~~~~~l~~~~~~~~~~-~~V~~~G~~~~~~~~~~~~~~~~ad~~v~ps~~E~~~~~~lEAma~G~PvI~ 344 (416)
T 2x6q_A 266 LLVGVMAHDDPEGWIYFEKTLRKIGED-YDVKVLTNLIGVHAREVNAFQRASDVILQMSIREGFGLTVTEAMWKGKPVIG 344 (416)
T ss_dssp EEEECCCTTCHHHHHHHHHHHHHHTTC-TTEEEEEGGGTCCHHHHHHHHHHCSEEEECCSSCSSCHHHHHHHHTTCCEEE
T ss_pred EEEecCcccchhHHHHHHHHHHHhCCC-CcEEEecccCCCCHHHHHHHHHhCCEEEECCCcCCCccHHHHHHHcCCCEEE
Confidence 999977322 34467788888899997 89999996542 45788889999999999977 669999999999999998
Q ss_pred cCCCccCccchh-HHHhhhCCcccccCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHH
Q 003891 635 MAGSVHAHNVGV-SLLTKVGLKHLIAKNEDEYVQLALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRNM 712 (788)
Q Consensus 635 ~~g~~~~~r~~~-~~l~~~gl~~~ia~~~~~y~~~a~~l~~d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ 712 (788)
+++++ .-+-.-|-.+++.+|.+++++...++.+|++.+++++++.++.+.+. |+++.+++.+++.|+++
T Consensus 345 -------~~~~g~~e~i~~~~~g~l~~d~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~--fs~~~~~~~~~~~~~~l 414 (416)
T 2x6q_A 345 -------RAVGGIKFQIVDGETGFLVRDANEAVEVVLYLLKHPEVSKEMGAKAKERVRKN--FIITKHMERYLDILNSL 414 (416)
T ss_dssp -------ESCHHHHHHCCBTTTEEEESSHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHH--TBHHHHHHHHHHHHHTC
T ss_pred -------ccCCCChhheecCCCeEEECCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHH--cCHHHHHHHHHHHHHHh
Confidence 44432 11111244566677999999999999999999999999998877543 89999999999999865
No 105
>3okp_A GDP-mannose-dependent alpha-(1-6)-phosphatidylino monomannoside mannosyltransferase...; GT-B fold, alpha-mannosyltransferase; HET: GDD; 2.00A {Corynebacterium glutamicum} PDB: 3okc_A* 3oka_A*
Probab=99.66 E-value=2.7e-16 Score=172.39 Aligned_cols=337 Identities=13% Similarity=0.091 Sum_probs=214.0
Q ss_pred CeeEeeccCCcccC--hhHHhhhhhhcccCCCceEEEEEeccccCChhhHHHHHHHhhhCCeEEEccCC-------CHHH
Q 003891 354 PLVIGYVSPDYFTH--SVSYFIEAPLVYHDYQNYKVVVYSAVVKADAKTIRFREKVMKKGGIWRDIYGI-------DEKK 424 (788)
Q Consensus 354 ~lriGyvS~df~~H--~v~~~~~~~l~~~dr~~fev~~Y~~~~~~D~~t~~~r~~~~~~~~~~~~~~~~-------~~~~ 424 (788)
+.+|.+++..|..+ .+...+..+...+ .+.+|++++....... ...+.. ...-....+... ....
T Consensus 4 ~mkIl~v~~~~~p~~gG~~~~~~~l~~~L--~g~~v~v~~~~~~~~~-~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 77 (394)
T 3okp_A 4 SRKTLVVTNDFPPRIGGIQSYLRDFIATQ--DPESIVVFASTQNAEE-AHAYDK---TLDYEVIRWPRSVMLPTPTTAHA 77 (394)
T ss_dssp CCCEEEEESCCTTSCSHHHHHHHHHHTTS--CGGGEEEEEECSSHHH-HHHHHT---TCSSEEEEESSSSCCSCHHHHHH
T ss_pred CceEEEEeCccCCccchHHHHHHHHHHHh--cCCeEEEEECCCCccc-hhhhcc---ccceEEEEccccccccchhhHHH
Confidence 46788888877633 3345555666666 3567777665443211 122221 111223333221 1357
Q ss_pred HHHHHHhCCCcEEEeCCCCCCCCccccccc-CCCC-eEEecccCCCCCC------------CCCccEEEecCCCCCcCcc
Q 003891 425 VAAMVREDKIDILVELTGHTANNKLGMMAC-QPAP-VQVTWIGYPNTTG------------LPTIDYRITDSLADPPETK 490 (788)
Q Consensus 425 ~a~~i~~d~idilvdl~g~t~~~~~~~~a~-r~Ap-vq~~~~g~~~ttg------------~~~~Dy~i~d~~~~p~~~~ 490 (788)
+.+.|+..++||++--..... ..+..++. .-.| +-+++.|+..... +...|.+|+-.-..-....
T Consensus 78 l~~~~~~~~~Dvv~~~~~~~~-~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~ 156 (394)
T 3okp_A 78 MAEIIREREIDNVWFGAAAPL-ALMAGTAKQAGASKVIASTHGHEVGWSMLPGSRQSLRKIGTEVDVLTYISQYTLRRFK 156 (394)
T ss_dssp HHHHHHHTTCSEEEESSCTTG-GGGHHHHHHTTCSEEEEECCSTHHHHTTSHHHHHHHHHHHHHCSEEEESCHHHHHHHH
T ss_pred HHHHHHhcCCCEEEECCcchH-HHHHHHHHhcCCCcEEEEeccchhhhhhcchhhHHHHHHHHhCCEEEEcCHHHHHHHH
Confidence 888899999999973221111 11111111 2233 4444444321110 1235666653211111111
Q ss_pred CC--CccceEEcCCCccc--cCCCCCC--CCCCCCCCCCCCCeEEEecCCC--CcCCHHHHHHHHHHHhHcCCcEEEEec
Q 003891 491 QK--HVEELIRLPECFLC--YTPSPEA--GPVCPTPALTNGFITFGSFNNL--AKITPKVLQVWARILCAVPNSRLVVKC 562 (788)
Q Consensus 491 ~~--~~e~l~~lp~~~~~--~~~~~~~--~~~~~~~~~~~~~~~f~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~l~~ 562 (788)
.. ..+++..+|+..-. |.|.... ...+...+++++.+++++++++ .|..+.++++|.++.+..|+.+|+++|
T Consensus 157 ~~~~~~~~~~vi~ngv~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~~~Kg~~~li~a~~~l~~~~~~~~l~i~G 236 (394)
T 3okp_A 157 SAFGSHPTFEHLPSGVDVKRFTPATPEDKSATRKKLGFTDTTPVIACNSRLVPRKGQDSLIKAMPQVIAARPDAQLLIVG 236 (394)
T ss_dssp HHHCSSSEEEECCCCBCTTTSCCCCHHHHHHHHHHTTCCTTCCEEEEESCSCGGGCHHHHHHHHHHHHHHSTTCEEEEEC
T ss_pred HhcCCCCCeEEecCCcCHHHcCCCCchhhHHHHHhcCCCcCceEEEEEeccccccCHHHHHHHHHHHHhhCCCeEEEEEc
Confidence 11 24677888864210 1110000 0001123566777788888886 899999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHHHHhcccccEeecCCCC--------CCchhHHHHhhhCCceee
Q 003891 563 KPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPY--------AGTTTTCESLYMGVPCVT 634 (788)
Q Consensus 563 ~~~~~~~~~~~l~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~~Dv~Ld~~~~--------~g~~t~~eal~~GvPvvt 634 (788)
.+ +....+++.+ .|+. ++|.|.|.++ .++....|+.+|+++-|+.+ +.+++++|||++|+|||+
T Consensus 237 ~g----~~~~~l~~~~--~~~~-~~v~~~g~~~-~~~~~~~~~~ad~~v~ps~~~~~~~~~e~~~~~~~Ea~a~G~PvI~ 308 (394)
T 3okp_A 237 SG----RYESTLRRLA--TDVS-QNVKFLGRLE-YQDMINTLAAADIFAMPARTRGGGLDVEGLGIVYLEAQACGVPVIA 308 (394)
T ss_dssp CC----TTHHHHHHHT--GGGG-GGEEEEESCC-HHHHHHHHHHCSEEEECCCCBGGGTBCCSSCHHHHHHHHTTCCEEE
T ss_pred Cc----hHHHHHHHHH--hccc-CeEEEcCCCC-HHHHHHHHHhCCEEEecCccccccccccccCcHHHHHHHcCCCEEE
Confidence 77 4556666655 6776 8999999987 68999999999999999975 558899999999999998
Q ss_pred cCCCccCccchhHHHhhhCCcccccC--CHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHH
Q 003891 635 MAGSVHAHNVGVSLLTKVGLKHLIAK--NEDEYVQLALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRNM 712 (788)
Q Consensus 635 ~~g~~~~~r~~~~~l~~~gl~~~ia~--~~~~y~~~a~~l~~d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ 712 (788)
.....+..-+ .-| .+++.. |.+++++...++.+|++.+++++++.++...+. |+++.+++.+++.|+++
T Consensus 309 ~~~~~~~e~i------~~~-~g~~~~~~d~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~--~s~~~~~~~~~~~~~~~ 379 (394)
T 3okp_A 309 GTSGGAPETV------TPA-TGLVVEGSDVDKLSELLIELLDDPIRRAAMGAAGRAHVEAE--WSWEIMGERLTNILQSE 379 (394)
T ss_dssp CSSTTGGGGC------CTT-TEEECCTTCHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH--TBHHHHHHHHHHHHHSC
T ss_pred eCCCChHHHH------hcC-CceEeCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHh--CCHHHHHHHHHHHHHHh
Confidence 5433222211 124 455554 999999999999999999999999998877543 89999999999999875
Q ss_pred HH
Q 003891 713 WH 714 (788)
Q Consensus 713 ~~ 714 (788)
-+
T Consensus 380 ~r 381 (394)
T 3okp_A 380 PR 381 (394)
T ss_dssp CC
T ss_pred cc
Confidence 44
No 106
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.65 E-value=9e-16 Score=148.15 Aligned_cols=161 Identities=12% Similarity=0.057 Sum_probs=138.9
Q ss_pred HHHhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHH-Hc
Q 003891 136 LTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYK-DR 214 (788)
Q Consensus 136 l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~-~~ 214 (788)
+..+|..+...|++++|+..|+++++.+|++..++..+|.++...|++++|+..+++++...| ++..+..++.+.. ..
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~~~ 87 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKSLIAKLELHQQ 87 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHHHHHHHHHHhh
Confidence 344566666688999999999999999999999999999999999999999999999999999 7777666665533 33
Q ss_pred CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCCHHHHHHHH
Q 003891 215 DNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTY--AEAYNNLGVLYRDAGSISLAIDAY 292 (788)
Q Consensus 215 g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~--~~~~~~la~~~~~~g~~~eA~~~~ 292 (788)
++..+|+..++++++.+|+++.+++.+|.++...|++++|+..|+++++.+|+. ..++..++.++..+|+.++|+..|
T Consensus 88 ~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y 167 (176)
T 2r5s_A 88 AAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKY 167 (176)
T ss_dssp HTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHH
T ss_pred cccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHH
Confidence 344568999999999999999999999999999999999999999999999875 568999999999999999999999
Q ss_pred HHHHh
Q 003891 293 EQCLK 297 (788)
Q Consensus 293 ~~al~ 297 (788)
++++.
T Consensus 168 ~~al~ 172 (176)
T 2r5s_A 168 RRQLY 172 (176)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98875
No 107
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.64 E-value=1.1e-15 Score=147.64 Aligned_cols=168 Identities=11% Similarity=-0.043 Sum_probs=121.0
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHH
Q 003891 55 PHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAI 134 (788)
Q Consensus 55 p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 134 (788)
|...+.++.+|..+...|++++|+..|+++++.+|++..++..+|.++...|++++|+..++++++..| ++......+.
T Consensus 3 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~~ 81 (176)
T 2r5s_A 3 ASPDEQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKSLIAK 81 (176)
T ss_dssp ---CTTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHHHHHH
Confidence 444556788888888889999999999998888888888899999999999999999999988888888 6543322221
Q ss_pred HHHHhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC--HHHHHHHHHHHH
Q 003891 135 ALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHC--AEACNNLGVIYK 212 (788)
Q Consensus 135 ~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~ 212 (788)
+... ..+...+|+..++++++.+|++..+++.+|.++...|++++|+..|+++++.+|+. ..++.++|.++.
T Consensus 82 ~~~~------~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~ 155 (176)
T 2r5s_A 82 LELH------QQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILS 155 (176)
T ss_dssp HHHH------HHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHH
T ss_pred HHHH------hhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHH
Confidence 1110 11122346777777777777777777777777777777777777777777777654 457777777777
Q ss_pred HcCCHHHHHHHHHHHHh
Q 003891 213 DRDNLDKAVECYQMALS 229 (788)
Q Consensus 213 ~~g~~~eA~~~~~~al~ 229 (788)
..|+.++|+..|++++.
T Consensus 156 ~~g~~~~A~~~y~~al~ 172 (176)
T 2r5s_A 156 ALGQGNAIASKYRRQLY 172 (176)
T ss_dssp HHCSSCHHHHHHHHHHH
T ss_pred HhCCCCcHHHHHHHHHH
Confidence 77777777777777654
No 108
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.64 E-value=7.2e-15 Score=153.95 Aligned_cols=170 Identities=11% Similarity=-0.010 Sum_probs=134.2
Q ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHH
Q 003891 53 IDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNM 132 (788)
Q Consensus 53 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 132 (788)
..|.+...++.+|..+...|++++|+..|+++++.+|++..++..+|.++...|++++|+..+++++..+|+........
T Consensus 112 ~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~ 191 (287)
T 3qou_A 112 VLPREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVA 191 (287)
T ss_dssp HSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHH
T ss_pred HcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHH
Confidence 34888888999999999999999999999999999999999999999999999999999999999988888654332222
Q ss_pred HHHHHHhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC--HHHHHHHHHH
Q 003891 133 AIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHC--AEACNNLGVI 210 (788)
Q Consensus 133 a~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~la~~ 210 (788)
+. .+...++.++|+..++++++.+|++..+++.+|.++...|++++|+..|+++++.+|++ ..++.+++.+
T Consensus 192 ~~-------~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~ 264 (287)
T 3qou_A 192 QI-------ELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEI 264 (287)
T ss_dssp HH-------HHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHH
T ss_pred HH-------HHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHH
Confidence 22 22334466777788888888888888888888888888888888888888888877776 6777777777
Q ss_pred HHHcCCHHHHHHHHHHHHh
Q 003891 211 YKDRDNLDKAVECYQMALS 229 (788)
Q Consensus 211 ~~~~g~~~eA~~~~~~al~ 229 (788)
+...|+.++|...|++++.
T Consensus 265 ~~~~g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 265 LAALGTGDALASXYRRQLY 283 (287)
T ss_dssp HHHHCTTCHHHHHHHHHHH
T ss_pred HHHcCCCCcHHHHHHHHHH
Confidence 7777777777777777764
No 109
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.64 E-value=2.7e-16 Score=169.79 Aligned_cols=262 Identities=13% Similarity=0.166 Sum_probs=123.5
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC
Q 003891 26 VLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNR 105 (788)
Q Consensus 26 ~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~ 105 (788)
+|..+|..+...|++++|++.|.++ .+...+...+..+...|++++|+.+++.+.+..++ +.+...++.+|.+.
T Consensus 34 vWs~La~A~l~~g~~~eAIdsfika-----~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~~~~-~~i~~~Li~~Y~Kl 107 (449)
T 1b89_A 34 VWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARE-SYVETELIFALAKT 107 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHcC-----CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCcc-chhHHHHHHHHHHh
Confidence 4677777778888888888888663 35557778888888888888888888877775333 66677788888888
Q ss_pred CCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHH
Q 003891 106 GDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDM 185 (788)
Q Consensus 106 g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 185 (788)
|++.++.++++. |+. ..+..+|..+...|++++|+.+|.++ ..+..+|.++.++|++++
T Consensus 108 g~l~e~e~f~~~-----pn~--------~a~~~IGd~~~~~g~yeeA~~~Y~~a--------~n~~~LA~~L~~Lg~yq~ 166 (449)
T 1b89_A 108 NRLAELEEFING-----PNN--------AHIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQA 166 (449)
T ss_dssp -CHHHHTTTTTC-----C------------------------CTTTHHHHHHHT--------TCHHHHHHHHHTTTCHHH
T ss_pred CCHHHHHHHHcC-----CcH--------HHHHHHHHHHHHcCCHHHHHHHHHHh--------hhHHHHHHHHHHhccHHH
Confidence 888887777642 322 15556666677777888888888866 357788888888888888
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 003891 186 AIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAAN 265 (788)
Q Consensus 186 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~ 265 (788)
|++.++++ .++..|...+.++...|+++.|..+... +.. +++-...+..+|.+.|++++|+.++++++.++
T Consensus 167 AVea~~KA-----~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-L~~---~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le 237 (449)
T 1b89_A 167 AVDGARKA-----NSTRTWKEVCFACVDGKEFRLAQMCGLH-IVV---HADELEELINYYQDRGYFEELITMLEAALGLE 237 (449)
T ss_dssp HHHHHHHH-----TCHHHHHHHHHHHHHTTCHHHHHHTTTT-TTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST
T ss_pred HHHHHHHc-----CCchhHHHHHHHHHHcCcHHHHHHHHHH-HHh---CHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCc
Confidence 88888888 3677888888888888888888776664 223 33445567778888888888888888888888
Q ss_pred CCCHHHHHHHHHHHHH--cCCHHHHHHHHHHHHhhCC-----CChhhHHhHHHHhhhccCCCchHHH
Q 003891 266 PTYAEAYNNLGVLYRD--AGSISLAIDAYEQCLKIDP-----DSRNAGQNRLLAMNYINEGHDDKLF 325 (788)
Q Consensus 266 p~~~~~~~~la~~~~~--~g~~~eA~~~~~~al~l~p-----~~~~a~~~~lla~~~l~~g~~~~~~ 325 (788)
+.+..++..+|.+|.+ .++..+.++.|...+.+.| ++...|.. +...|...++.+.+.
T Consensus 238 ~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e--~~~ly~~~~e~d~A~ 302 (449)
T 1b89_A 238 RAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAE--LVFLYDKYEEYDNAI 302 (449)
T ss_dssp TCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHH--HHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH--HHHHHHhhchHHHHH
Confidence 8888888888887765 3466677777777777766 55555554 344455555555444
No 110
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.63 E-value=7.8e-15 Score=153.70 Aligned_cols=169 Identities=9% Similarity=0.026 Sum_probs=144.7
Q ss_pred CCCcHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCH
Q 003891 122 SPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCA 201 (788)
Q Consensus 122 ~p~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 201 (788)
.|++...+ ..+|..+...|++++|+..|+++++.+|++..+++.+|.++...|++++|+..+++++..+|+..
T Consensus 113 lp~~~~~~-------~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~ 185 (287)
T 3qou_A 113 LPREEELX-------AQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTR 185 (287)
T ss_dssp SCCHHHHH-------HHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHH
T ss_pred cCCchhhH-------HHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchH
Confidence 36655444 34455555577999999999999999999999999999999999999999999999998888777
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHH
Q 003891 202 EACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTY--AEAYNNLGVLY 279 (788)
Q Consensus 202 ~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~--~~~~~~la~~~ 279 (788)
......+..+...++.++|+..|+++++.+|++..+++++|.++...|++++|+..|+++++.+|++ ..++..++.++
T Consensus 186 ~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~ 265 (287)
T 3qou_A 186 YQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEIL 265 (287)
T ss_dssp HHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHH
Confidence 7777777778888888889999999999999999999999999999999999999999999999988 88899999999
Q ss_pred HHcCCHHHHHHHHHHHHh
Q 003891 280 RDAGSISLAIDAYEQCLK 297 (788)
Q Consensus 280 ~~~g~~~eA~~~~~~al~ 297 (788)
..+|+.++|...|++++.
T Consensus 266 ~~~g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 266 AALGTGDALASXYRRQLY 283 (287)
T ss_dssp HHHCTTCHHHHHHHHHHH
T ss_pred HHcCCCCcHHHHHHHHHH
Confidence 999999999999988875
No 111
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.63 E-value=4.1e-16 Score=146.19 Aligned_cols=116 Identities=9% Similarity=0.089 Sum_probs=104.5
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 003891 188 VFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPT 267 (788)
Q Consensus 188 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~ 267 (788)
..++++++++|++..+++.+|.++...|++++|+.+|+++++.+|+++.+|.++|.++..+|++++|+..|+++++++|+
T Consensus 23 ~~l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~ 102 (151)
T 3gyz_A 23 ATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN 102 (151)
T ss_dssp CCTGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSS
T ss_pred CCHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCC
Confidence 44667778888889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCh
Q 003891 268 YAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSR 303 (788)
Q Consensus 268 ~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~ 303 (788)
++.+++++|.+|..+|++++|+.+|++++++.|+..
T Consensus 103 ~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 103 DYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 999999999999999999999999999999998764
No 112
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.62 E-value=1.3e-14 Score=167.60 Aligned_cols=165 Identities=12% Similarity=0.032 Sum_probs=115.3
Q ss_pred cCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Q 003891 37 AGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYE 116 (788)
Q Consensus 37 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 116 (788)
.|++++|+..|+++++.+|++..+++.+|.++...|++++|+..|+++++.+|++..++..+|.+|...|++++|+++|+
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 81 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQ 81 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 47788888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHhhCCCcHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc---CChHHHHHHHHHH
Q 003891 117 RCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEM---LKFDMAIVFYELA 193 (788)
Q Consensus 117 ~al~~~p~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~---g~~~~A~~~~~~a 193 (788)
++++++|++...+.++ |.++...|++++|+++|+++++.+|++..++..+|.++... |++++|++.++++
T Consensus 82 ~al~~~p~~~~~~~~l-------a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~a 154 (568)
T 2vsy_A 82 QASDAAPEHPGIALWL-------GHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAA 154 (568)
T ss_dssp HHHHHCTTCHHHHHHH-------HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHH
T ss_pred HHHhcCCCCHHHHHHH-------HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence 8888888876544444 34444456778888888888877777777777777777777 7777777777777
Q ss_pred HhcCCCCHHHHHHHH
Q 003891 194 FHFNPHCAEACNNLG 208 (788)
Q Consensus 194 l~~~p~~~~~~~~la 208 (788)
++.+|.+...+..++
T Consensus 155 l~~~p~~~~~~~~l~ 169 (568)
T 2vsy_A 155 VAQGVGAVEPFAFLS 169 (568)
T ss_dssp HHHTCCCSCHHHHTT
T ss_pred HhcCCcccChHHHhC
Confidence 777777666555544
No 113
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.61 E-value=1.2e-15 Score=164.72 Aligned_cols=238 Identities=13% Similarity=0.095 Sum_probs=110.0
Q ss_pred HHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHH
Q 003891 35 KLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIAC 114 (788)
Q Consensus 35 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 114 (788)
...|+.++|.+++++. +++.+|..+|.++...|++++|++.|.++ .++..+...+..+...|++++|+.+
T Consensus 14 ~~~~~ld~A~~fae~~-----~~~~vWs~La~A~l~~g~~~eAIdsfika-----~D~~~y~~V~~~ae~~g~~EeAi~y 83 (449)
T 1b89_A 14 EHIGNLDRAYEFAERC-----NEPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKY 83 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHccCHHHHHHHHHhC-----CChHHHHHHHHHHHHcCCHHHHHHHHHcC-----CCHHHHHHHHHHHHhCCCHHHHHHH
Confidence 4568899999999998 33569999999999999999999999874 4566899999999999999999999
Q ss_pred HHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 003891 115 YERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAF 194 (788)
Q Consensus 115 ~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 194 (788)
++.+.+..++ + .+...++.+|.+.|++.++.++++. | +..++..+|..+...|+|++|..+|.++
T Consensus 84 l~~ark~~~~-~-------~i~~~Li~~Y~Klg~l~e~e~f~~~-----p-n~~a~~~IGd~~~~~g~yeeA~~~Y~~a- 148 (449)
T 1b89_A 84 LQMARKKARE-S-------YVETELIFALAKTNRLAELEEFING-----P-NNAHIQQVGDRCYDEKMYDAAKLLYNNV- 148 (449)
T ss_dssp ---------------------------------CHHHHTTTTTC-----C-----------------CTTTHHHHHHHT-
T ss_pred HHHHHHhCcc-c-------hhHHHHHHHHHHhCCHHHHHHHHcC-----C-cHHHHHHHHHHHHHcCCHHHHHHHHHHh-
Confidence 9999885433 2 2344455666667799998888853 4 3459999999999999999999999977
Q ss_pred hcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 003891 195 HFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNN 274 (788)
Q Consensus 195 ~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~ 274 (788)
..|..+|.++.++|++++|++.++++ .++..|...+.++...|+++.|..+... +..+ ++-...
T Consensus 149 -------~n~~~LA~~L~~Lg~yq~AVea~~KA-----~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-L~~~---ad~l~~ 212 (449)
T 1b89_A 149 -------SNFGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVDGKEFRLAQMCGLH-IVVH---ADELEE 212 (449)
T ss_dssp -------TCHHHHHHHHHTTTCHHHHHHHHHHH-----TCHHHHHHHHHHHHHTTCHHHHHHTTTT-TTTC---HHHHHH
T ss_pred -------hhHHHHHHHHHHhccHHHHHHHHHHc-----CCchhHHHHHHHHHHcCcHHHHHHHHHH-HHhC---HhhHHH
Confidence 47899999999999999999999999 4789999999999999999999887775 2244 444567
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCChhhHHhHHHHh
Q 003891 275 LGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAM 313 (788)
Q Consensus 275 la~~~~~~g~~~eA~~~~~~al~l~p~~~~a~~~~lla~ 313 (788)
+..+|.+.|++++|+.++++++.+++.+...+..+....
T Consensus 213 lv~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel~il~ 251 (449)
T 1b89_A 213 LINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILY 251 (449)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 899999999999999999999999999988888764443
No 114
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.60 E-value=3.6e-16 Score=167.76 Aligned_cols=185 Identities=16% Similarity=0.159 Sum_probs=162.2
Q ss_pred CCCHHHHHHHHHH----HHhhCCCcHHHHHHHHHHHHHhhhhh------------hhcCCHHHHHHHHHHHHHhCCCCHH
Q 003891 105 RGDLESAIACYER----CLAVSPNFEIAKNNMAIALTDLGTKV------------KLEGDINQGVAYYKKALYYNWHYAD 168 (788)
Q Consensus 105 ~g~~~~A~~~~~~----al~~~p~~~~~~~~la~~l~~lg~~~------------~~~g~~~~A~~~~~~al~~~p~~~~ 168 (788)
.+.+++|+..+++ ++.+.|+. + +...|... ...+++++|+..++++++..|+...
T Consensus 78 ~~~~e~al~~~~~Ge~~~l~i~p~~--a-------yg~~g~~~~~i~~~~~l~f~~~L~~~~~A~~~~~~a~~~~p~~a~ 148 (336)
T 1p5q_A 78 PYGLERAIQRMEKGEHSIVYLKPSY--A-------FGSVGKEKFQIPPNAELKYELHLKSFEKAKESWEMNSEEKLEQST 148 (336)
T ss_dssp CHHHHHHHTTCCTTCEEEEEECTTT--T-------TTTTCBGGGTBCSSCCEEEEEEEEEEECCCCGGGCCHHHHHHHHH
T ss_pred chHHHHHHhcCCCCCeEEEEECCcc--c-------cCcCCCCccCCCCCCeEEEEEEEeecccccchhcCCHHHHHHHHH
Confidence 4467778877777 77777764 1 22233222 1456788899999999998999999
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 003891 169 AMYNLGVAYGEMLKFDMAIVFYELAFHFNPHC---------------AEACNNLGVIYKDRDNLDKAVECYQMALSIKPN 233 (788)
Q Consensus 169 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---------------~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~ 233 (788)
++..+|.++...|++++|+..|+++++++|.+ ..++.++|.++..+|++++|+.+|+++++++|+
T Consensus 149 ~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~ 228 (336)
T 1p5q_A 149 IVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSN 228 (336)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999998 699999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH-HHHHHHHHhh
Q 003891 234 FSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLA-IDAYEQCLKI 298 (788)
Q Consensus 234 ~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~~eA-~~~~~~al~l 298 (788)
+..+++++|.+|..+|++++|+..|+++++++|++..++..++.++..+|++++| ...|++++..
T Consensus 229 ~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 294 (336)
T 1p5q_A 229 NEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFER 294 (336)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999 5577777654
No 115
>2gek_A Phosphatidylinositol mannosyltransferase (PIMA); GT4 glycosyltransferase, rossmann fold, complex; HET: GDP; 2.40A {Mycobacterium smegmatis} PDB: 2gej_A*
Probab=99.60 E-value=8.4e-15 Score=161.28 Aligned_cols=331 Identities=13% Similarity=0.091 Sum_probs=212.2
Q ss_pred CCCCeeEeeccCCcccC--hhHHhhhhhhcccCCCceEEEEEeccccCChhh---------HHHHHHHhhhCCeEEEccC
Q 003891 351 PERPLVIGYVSPDYFTH--SVSYFIEAPLVYHDYQNYKVVVYSAVVKADAKT---------IRFREKVMKKGGIWRDIYG 419 (788)
Q Consensus 351 ~~~~lriGyvS~df~~H--~v~~~~~~~l~~~dr~~fev~~Y~~~~~~D~~t---------~~~r~~~~~~~~~~~~~~~ 419 (788)
..++.+|.+++..+... -+...+..+...+...+++|++++......... .++.. . ..+..+ .
T Consensus 17 ~~~~MkIl~i~~~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~--~---~~~~~~-~ 90 (406)
T 2gek_A 17 RGSHMRIGMVCPYSFDVPGGVQSHVLQLAEVLRDAGHEVSVLAPASPHVKLPDYVVSGGKAVPIPY--N---GSVARL-R 90 (406)
T ss_dssp ----CEEEEECSSCTTSCCHHHHHHHHHHHHHHHTTCEEEEEESCCTTSCCCTTEEECCCCC------------------
T ss_pred CCCcceEEEEeccCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCCccccCCcccccCCcEEeccc--c---CCcccc-c
Confidence 35678999999765433 233455556666666688999887764432100 00000 0 000000 1
Q ss_pred CC---HHHHHHHHHhCCCcEEEeCCCCCCCCcccccccC--CCCeEEecccCCCCC------------CCCCccEEEecC
Q 003891 420 ID---EKKVAAMVREDKIDILVELTGHTANNKLGMMACQ--PAPVQVTWIGYPNTT------------GLPTIDYRITDS 482 (788)
Q Consensus 420 ~~---~~~~a~~i~~d~idilvdl~g~t~~~~~~~~a~r--~Apvq~~~~g~~~tt------------g~~~~Dy~i~d~ 482 (788)
.. ...+.+.|+..++||++--....... ..++.| -.|+-+...+..... .+...|.+|+-.
T Consensus 91 ~~~~~~~~l~~~l~~~~~Dii~~~~~~~~~~--~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s 168 (406)
T 2gek_A 91 FGPATHRKVKKWIAEGDFDVLHIHEPNAPSL--SMLALQAAEGPIVATFHTSTTKSLTLSVFQGILRPYHEKIIGRIAVS 168 (406)
T ss_dssp CCHHHHHHHHHHHHHHCCSEEEEECCCSSSH--HHHHHHHEESSEEEEECCCCCSHHHHHHHHSTTHHHHTTCSEEEESS
T ss_pred ccHHHHHHHHHHHHhcCCCEEEECCccchHH--HHHHHHhcCCCEEEEEcCcchhhhhHHHHHHHHHHHHhhCCEEEECC
Confidence 11 25677888888999998644443322 222222 356655555532221 124567776542
Q ss_pred CCCCcCccCCC-ccceEEcCCCcc--ccCCCCCCCCCCCCCCCCCCCeEEEecCCC---CcCCHHHHHHHHHHHhHcCCc
Q 003891 483 LADPPETKQKH-VEELIRLPECFL--CYTPSPEAGPVCPTPALTNGFITFGSFNNL---AKITPKVLQVWARILCAVPNS 556 (788)
Q Consensus 483 ~~~p~~~~~~~-~e~l~~lp~~~~--~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~---~K~~~~~~~~~~~il~~~p~~ 556 (788)
-..-......| .+++ .+|+..- .|.+.. ....++.+.+++++++++ .|..+.++++|.++.+..|+.
T Consensus 169 ~~~~~~~~~~~~~~~~-vi~~~v~~~~~~~~~------~~~~~~~~~~~i~~~G~~~~~~Kg~~~li~a~~~l~~~~~~~ 241 (406)
T 2gek_A 169 DLARRWQMEALGSDAV-EIPNGVDVASFADAP------LLDGYPREGRTVLFLGRYDEPRKGMAVLLAALPKLVARFPDV 241 (406)
T ss_dssp HHHHHHHHHHHSSCEE-ECCCCBCHHHHHTCC------CCTTCSCSSCEEEEESCTTSGGGCHHHHHHHHHHHHTTSTTC
T ss_pred HHHHHHHHHhcCCCcE-EecCCCChhhcCCCc------hhhhccCCCeEEEEEeeeCccccCHHHHHHHHHHHHHHCCCe
Confidence 11101111122 3456 7775421 022221 112333355678888877 799999999999999999999
Q ss_pred EEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHHHHhcccccEeecCCC-C-CCchhHHHHhhhCCceee
Q 003891 557 RLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFP-Y-AGTTTTCESLYMGVPCVT 634 (788)
Q Consensus 557 ~l~l~~~~~~~~~~~~~l~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~~Dv~Ld~~~-~-~g~~t~~eal~~GvPvvt 634 (788)
+|+++|.+ +. ..+++.++++ .++|.|.|.++ ..+....|+.+|++|-|+. + +.+++++|||++|+|||+
T Consensus 242 ~l~i~G~~----~~-~~l~~~~~~~---~~~v~~~g~~~-~~~~~~~~~~adv~v~ps~~~e~~~~~~~Ea~a~G~PvI~ 312 (406)
T 2gek_A 242 EILIVGRG----DE-DELREQAGDL---AGHLRFLGQVD-DATKASAMRSADVYCAPHLGGESFGIVLVEAMAAGTAVVA 312 (406)
T ss_dssp EEEEESCS----CH-HHHHHHTGGG---GGGEEECCSCC-HHHHHHHHHHSSEEEECCCSCCSSCHHHHHHHHHTCEEEE
T ss_pred EEEEEcCC----cH-HHHHHHHHhc---cCcEEEEecCC-HHHHHHHHHHCCEEEecCCCCCCCchHHHHHHHcCCCEEE
Confidence 99999987 33 6777776665 48999999987 6788999999999999963 4 668999999999999998
Q ss_pred cCCCccCccchh-HHHhhhCCccccc--CCHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHH
Q 003891 635 MAGSVHAHNVGV-SLLTKVGLKHLIA--KNEDEYVQLALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRN 711 (788)
Q Consensus 635 ~~g~~~~~r~~~-~~l~~~gl~~~ia--~~~~~y~~~a~~l~~d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~~ 711 (788)
+++++ .-+-.-|..+++. .|.+++++...++.+|++.+.+++++.++... .|+.+.+++.+++.|++
T Consensus 313 -------~~~~~~~e~i~~~~~g~~~~~~d~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~---~~s~~~~~~~~~~~~~~ 382 (406)
T 2gek_A 313 -------SDLDAFRRVLADGDAGRLVPVDDADGMAAALIGILEDDQLRAGYVARASERVH---RYDWSVVSAQIMRVYET 382 (406)
T ss_dssp -------CCCHHHHHHHTTTTSSEECCTTCHHHHHHHHHHHHHCHHHHHHHHHHHHHHGG---GGBHHHHHHHHHHHHHH
T ss_pred -------ecCCcHHHHhcCCCceEEeCCCCHHHHHHHHHHHHcCHHHHHHHHHHHHHHHH---hCCHHHHHHHHHHHHHH
Confidence 44432 1122224455665 79999999999999999999999999988765 48999999999999998
Q ss_pred HHHH
Q 003891 712 MWHR 715 (788)
Q Consensus 712 ~~~~ 715 (788)
+..+
T Consensus 383 ~~~~ 386 (406)
T 2gek_A 383 VSGA 386 (406)
T ss_dssp HCCT
T ss_pred HHhh
Confidence 7653
No 116
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.60 E-value=2.1e-15 Score=141.30 Aligned_cols=121 Identities=16% Similarity=0.137 Sum_probs=114.1
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003891 149 INQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMAL 228 (788)
Q Consensus 149 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al 228 (788)
+-.+-..++++++++|++..+++.+|.++...|++++|+..|++++..+|+++.+|.++|.++..+|++++|+.+|++++
T Consensus 18 ~~~~~~~l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al 97 (151)
T 3gyz_A 18 AINSGATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAF 97 (151)
T ss_dssp HHHTSCCTGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHCCCCHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHH
Confidence 33444567778888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 003891 229 SIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYA 269 (788)
Q Consensus 229 ~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~ 269 (788)
+++|+++.+++++|.+|..+|++++|+..|++++++.|+.+
T Consensus 98 ~l~P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 98 ALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp HHSSSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred hhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 99999999999999999999999999999999999999865
No 117
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=99.59 E-value=2.3e-15 Score=153.94 Aligned_cols=217 Identities=11% Similarity=0.002 Sum_probs=174.5
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHH-------HHHHHHhhhhhhhcCCHHHHHHHHHHHHHhCCCC--
Q 003891 96 CNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNM-------AIALTDLGTKVKLEGDINQGVAYYKKALYYNWHY-- 166 (788)
Q Consensus 96 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l-------a~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-- 166 (788)
+..|.-+ ..+++..|.+.|.++++++|+..++|..+ +.++..+. +..+++..+++.+.+.|..
T Consensus 11 ~~~~~~~-~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~-------r~~~a~~~~~~~l~l~p~~l~ 82 (282)
T 4f3v_A 11 FESAVSM-LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAW-------YSRRNFGQLSGSVQISMSTLN 82 (282)
T ss_dssp HHHHHHH-TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHH-------HTGGGTTHHHHTTTCCGGGGC
T ss_pred HHHHhcc-cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHH-------HHHHHHHHHHHHhcCChhhhh
Confidence 3344444 57888888888888888888888888877 56666654 5677777888888866543
Q ss_pred -------------------HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003891 167 -------------------ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMA 227 (788)
Q Consensus 167 -------------------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~a 227 (788)
.++...++.++...|++++|.+.|+..+...|++. ..+.+|.++.+.+++++|+.+|+++
T Consensus 83 a~~~~~g~y~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a 161 (282)
T 4f3v_A 83 ARIAIGGLYGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHL-VAWMKAVVYGAAERWTDVIDQVKSA 161 (282)
T ss_dssp CEEECCTTTCCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHHTTCHHHHHHHHTTG
T ss_pred hhhccCCcccccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHHHcCCHHHHHHHHHHh
Confidence 34566689999999999999999999999999888 9999999999999999999999988
Q ss_pred HhhCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 003891 228 LSIKPNF--SQSLNNLGVVYTVQGKMDAAAEMIEKAIAAN--PT-YAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDS 302 (788)
Q Consensus 228 l~~~p~~--~~~~~~la~~~~~~g~~~eA~~~l~kal~~~--p~-~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~ 302 (788)
.+..+.. ..+++.+|.++..+|++++|+.+|++++... |. ..++++.+|.++.++|+.++|...|++++..+|+
T Consensus 162 ~~~~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~- 240 (282)
T 4f3v_A 162 GKWPDKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE- 240 (282)
T ss_dssp GGCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-
T ss_pred hccCCcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-
Confidence 7653221 3589999999999999999999999998654 55 6789999999999999999999999999999999
Q ss_pred hhhHHhHHHHhhhccCCCchH
Q 003891 303 RNAGQNRLLAMNYINEGHDDK 323 (788)
Q Consensus 303 ~~a~~~~lla~~~l~~g~~~~ 323 (788)
..+... +....|...-+..+
T Consensus 241 ~~~~~a-L~~~~~~~~~t~~~ 260 (282)
T 4f3v_A 241 PKVAAA-LKDPSYRLKTTTAE 260 (282)
T ss_dssp HHHHHH-HHCTTCCCCCCCHH
T ss_pred HHHHHH-HhCCCCCCCCCcHH
Confidence 555443 33444433334443
No 118
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.58 E-value=1.2e-13 Score=137.71 Aligned_cols=173 Identities=16% Similarity=0.057 Sum_probs=88.6
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhcC----CHHHH
Q 003891 77 ALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEG----DINQG 152 (788)
Q Consensus 77 A~~~~~kal~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~g----~~~~A 152 (788)
|+.+|+++.+. .++.+++.+|.+|...+++++|+.+|+++.+. .++.+. ..+|.+|.. + ++++|
T Consensus 5 A~~~~~~aa~~--g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--g~~~a~-------~~lg~~y~~-~g~~~~~~~A 72 (212)
T 3rjv_A 5 PGSQYQQQAEA--GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ--GDGDAL-------ALLAQLKIR-NPQQADYPQA 72 (212)
T ss_dssp TTHHHHHHHHT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--TCHHHH-------HHHHHHTTS-STTSCCHHHH
T ss_pred HHHHHHHHHHC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHH-------HHHHHHHHc-CCCCCCHHHH
Confidence 44444444443 34445555555555555555555555554443 122222 222222222 2 45555
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHH----cCCHHHHHH
Q 003891 153 VAYYKKALYYNWHYADAMYNLGVAYGE----MLKFDMAIVFYELAFHFNP--HCAEACNNLGVIYKD----RDNLDKAVE 222 (788)
Q Consensus 153 ~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~----~g~~~eA~~ 222 (788)
+.+|+++.+ +.++.+++++|.+|.. .+++++|+.+|+++.+..+ .++.+++++|.+|.. .+++++|+.
T Consensus 73 ~~~~~~A~~--~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~ 150 (212)
T 3rjv_A 73 RQLAEKAVE--AGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASE 150 (212)
T ss_dssp HHHHHHHHH--TTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHH
T ss_pred HHHHHHHHH--CCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHH
Confidence 555555532 3455555666666555 5566666666666665554 235566666666655 555666666
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHc-C-----CHHHHHHHHHHHHHh
Q 003891 223 CYQMALSIKPNFSQSLNNLGVVYTVQ-G-----KMDAAAEMIEKAIAA 264 (788)
Q Consensus 223 ~~~~al~~~p~~~~~~~~la~~~~~~-g-----~~~eA~~~l~kal~~ 264 (788)
+|+++++. +.++.+++++|.+|... | ++++|+.+|+++.+.
T Consensus 151 ~~~~A~~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~ 197 (212)
T 3rjv_A 151 YFKGSSSL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLE 197 (212)
T ss_dssp HHHHHHHT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHc
Confidence 66666555 44455556666655543 2 566666666666554
No 119
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.58 E-value=1e-13 Score=125.47 Aligned_cols=134 Identities=40% Similarity=0.645 Sum_probs=117.5
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 003891 168 DAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTV 247 (788)
Q Consensus 168 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~ 247 (788)
.+++.+|.++...|++++|+..++++++..|.+...+..+|.++...|++++|+.+++++++..|.+...+..+|.++..
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHH
Confidence 35677888888888888888888888888888888888888888888888889888888888888888888888888888
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 003891 248 QGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPD 301 (788)
Q Consensus 248 ~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~ 301 (788)
.|++++|+..++++++..|.+..++..+|.++...|++++|..+++++++.+|+
T Consensus 82 ~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135 (136)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred hcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence 999999999999998888888888888999999999999999999998888876
No 120
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.58 E-value=1.1e-14 Score=136.21 Aligned_cols=120 Identities=10% Similarity=-0.018 Sum_probs=107.0
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 003891 187 IVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANP 266 (788)
Q Consensus 187 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p 266 (788)
-..|++++..+|++...++.+|.++...|++++|+..|++++..+|.++.++..+|.++...|++++|+..|++++.++|
T Consensus 7 ~~~~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p 86 (148)
T 2vgx_A 7 GGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDI 86 (148)
T ss_dssp CCSHHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred hhhHHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 34578888888888889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhhH
Q 003891 267 TYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAG 306 (788)
Q Consensus 267 ~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~a~ 306 (788)
+++.+++++|.+|..+|++++|+++|+++++++|+++...
T Consensus 87 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 126 (148)
T 2vgx_A 87 XEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFX 126 (148)
T ss_dssp TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGH
T ss_pred CCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcch
Confidence 9999999999999999999999999999999988876653
No 121
>2iuy_A Avigt4, glycosyltransferase; antibiotics, family GT-4, avilamycin A; HET: MES; 2.1A {Streptomyces viridochromogenes} PDB: 2iv3_A*
Probab=99.57 E-value=4.5e-14 Score=151.78 Aligned_cols=300 Identities=11% Similarity=0.048 Sum_probs=185.7
Q ss_pred eeEeeccCC--------c---c---cChhHHhhhhhhcccCCCceEEEEEeccccCChhhHHHHHHHhhhCCeEEEccCC
Q 003891 355 LVIGYVSPD--------Y---F---THSVSYFIEAPLVYHDYQNYKVVVYSAVVKADAKTIRFREKVMKKGGIWRDIYGI 420 (788)
Q Consensus 355 lriGyvS~d--------f---~---~H~v~~~~~~~l~~~dr~~fev~~Y~~~~~~D~~t~~~r~~~~~~~~~~~~~~~~ 420 (788)
.+|.+++.. | . ..-+..++..+...+.+.+++|++++........ +...-+...
T Consensus 4 mkIl~v~~~~~~~~~~~~~p~~p~~~gG~~~~~~~l~~~L~~~G~~v~v~~~~~~~~~~------------~~~~~~~~~ 71 (342)
T 2iuy_A 4 LKVALVNIPLRVPGSDAWISVPPQGYGGIQWVVANLMDGLLELGHEVFLLGAPGSPAGR------------PGLTVVPAG 71 (342)
T ss_dssp CEEEEECCCCBCTTSSSBCCSSCSSSCHHHHHHHHHHHHHHHTTCEEEEESCTTSCCCS------------TTEEECSCC
T ss_pred cEEEEEeccccccCcccccccCcccCChHHHHHHHHHHHHHHcCCeEEEEecCCCCCCC------------CcceeccCC
Confidence 678888877 2 1 1223445556666666678999998776433211 112222222
Q ss_pred CHHHHHHHHHhCCCcEEEeCCCCCCCCcccccccCCCCeEEecccCCCCCCCCCccEEEecCCCCCcCccCCC--ccceE
Q 003891 421 DEKKVAAMVREDKIDILVELTGHTANNKLGMMACQPAPVQVTWIGYPNTTGLPTIDYRITDSLADPPETKQKH--VEELI 498 (788)
Q Consensus 421 ~~~~~a~~i~~d~idilvdl~g~t~~~~~~~~a~r~Apvq~~~~g~~~ttg~~~~Dy~i~d~~~~p~~~~~~~--~e~l~ 498 (788)
....+.+.|+..++||++--..+... ......-.| -++.-+..... ...|.+|+-. +.....+ .+++.
T Consensus 72 ~~~~l~~~l~~~~~Dvi~~~~~~~~~---~~~~~~~~p-v~~~h~~~~~~--~~~d~ii~~S----~~~~~~~~~~~~~~ 141 (342)
T 2iuy_A 72 EPEEIERWLRTADVDVVHDHSGGVIG---PAGLPPGTA-FISSHHFTTRP--VNPVGCTYSS----RAQRAHCGGGDDAP 141 (342)
T ss_dssp SHHHHHHHHHHCCCSEEEECSSSSSC---STTCCTTCE-EEEEECSSSBC--SCCTTEEESC----HHHHHHTTCCTTSC
T ss_pred cHHHHHHHHHhcCCCEEEECCchhhH---HHHhhcCCC-EEEecCCCCCc--ccceEEEEcC----HHHHHHHhcCCceE
Confidence 34578899999999999754433221 111122234 23333332211 1244444322 1111111 35666
Q ss_pred EcCCCccc--cCCCCCCCCCCCCCCCCCCCeEEEecCCC--CcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHH
Q 003891 499 RLPECFLC--YTPSPEAGPVCPTPALTNGFITFGSFNNL--AKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRF 574 (788)
Q Consensus 499 ~lp~~~~~--~~~~~~~~~~~~~~~~~~~~~~f~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~~~~l 574 (788)
.+|+..-. |.|... ..+ +..++++++++ .|..+.+++++.++ +.+|+++|.+ +.+..+
T Consensus 142 vi~ngvd~~~~~~~~~--------~~~-~~~~i~~vG~~~~~Kg~~~li~a~~~~-----~~~l~i~G~g----~~~~~l 203 (342)
T 2iuy_A 142 VIPIPVDPARYRSAAD--------QVA-KEDFLLFMGRVSPHKGALEAAAFAHAC-----GRRLVLAGPA----WEPEYF 203 (342)
T ss_dssp BCCCCBCGGGSCCSTT--------CCC-CCSCEEEESCCCGGGTHHHHHHHHHHH-----TCCEEEESCC----CCHHHH
T ss_pred EEcCCCChhhcCcccc--------cCC-CCCEEEEEeccccccCHHHHHHHHHhc-----CcEEEEEeCc----ccHHHH
Confidence 66654210 111110 111 22346666665 89999999998876 7899999987 355666
Q ss_pred HHHHHHcCCCCCcEEEcCCcCCcHHHHHhcccccEeecCCC----------C-CCchhHHHHhhhCCceeecCCCccCcc
Q 003891 575 LSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFP----------Y-AGTTTTCESLYMGVPCVTMAGSVHAHN 643 (788)
Q Consensus 575 ~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~~Dv~Ld~~~----------~-~g~~t~~eal~~GvPvvt~~g~~~~~r 643 (788)
++..+++| ++|.|.|.++ ..+....|+.+|+++-|+. + +.+++.+|||++|+|||+ ++
T Consensus 204 ~~~~~~~~---~~v~~~g~~~-~~~l~~~~~~adv~v~ps~~~~~~~~~~~~E~~~~~~~EAma~G~PvI~-------s~ 272 (342)
T 2iuy_A 204 DEITRRYG---STVEPIGEVG-GERRLDLLASAHAVLAMSQAVTGPWGGIWCEPGATVVSEAAVSGTPVVG-------TG 272 (342)
T ss_dssp HHHHHHHT---TTEEECCCCC-HHHHHHHHHHCSEEEECCCCCCCTTCSCCCCCCCHHHHHHHHTTCCEEE-------CC
T ss_pred HHHHHHhC---CCEEEeccCC-HHHHHHHHHhCCEEEECCcccccccccccccCccHHHHHHHhcCCCEEE-------cC
Confidence 67777777 7999999987 6788899999999999998 4 779999999999999998 44
Q ss_pred chh-HHHhhh--CCcccccC-CHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHH
Q 003891 644 VGV-SLLTKV--GLKHLIAK-NEDEYVQLALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRNMWHR 715 (788)
Q Consensus 644 ~~~-~~l~~~--gl~~~ia~-~~~~y~~~a~~l~~d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~ 715 (788)
+++ .-+..- |-.+++.+ |.+++++...++.+ .++.|+.++++ |+.+.+++++++.|+++..+
T Consensus 273 ~~~~~e~~~~~~~~~g~~~~~d~~~l~~~i~~l~~----~~~~~~~~~~~------~s~~~~~~~~~~~~~~~~~~ 338 (342)
T 2iuy_A 273 NGCLAEIVPSVGEVVGYGTDFAPDEARRTLAGLPA----SDEVRRAAVRL------WGHVTIAERYVEQYRRLLAG 338 (342)
T ss_dssp TTTHHHHGGGGEEECCSSSCCCHHHHHHHHHTSCC----HHHHHHHHHHH------HBHHHHHHHHHHHHHHHHTT
T ss_pred CCChHHHhcccCCCceEEcCCCHHHHHHHHHHHHH----HHHHHHHHHHh------cCHHHHHHHHHHHHHHHHcc
Confidence 432 111112 44556666 99999999988887 23333333222 78999999999999988653
No 122
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.57 E-value=1.6e-13 Score=136.69 Aligned_cols=185 Identities=15% Similarity=0.096 Sum_probs=156.8
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC----CHHHHHHHHH
Q 003891 41 QDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRG----DLESAIACYE 116 (788)
Q Consensus 41 ~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g----~~~~A~~~~~ 116 (788)
.+|+.+|+++.+. .++.+++.+|.+|...+++++|+.+|+++.+. .++.+++++|.+|.. + ++++|+.+|+
T Consensus 3 ~eA~~~~~~aa~~--g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~ 77 (212)
T 3rjv_A 3 TEPGSQYQQQAEA--GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ--GDGDALALLAQLKIR-NPQQADYPQARQLAE 77 (212)
T ss_dssp -CTTHHHHHHHHT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--TCHHHHHHHHHHTTS-STTSCCHHHHHHHHH
T ss_pred chHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHc-CCCCCCHHHHHHHHH
Confidence 3578899999875 78999999999999999999999999999875 579999999999998 7 9999999999
Q ss_pred HHHhhCCCcHHHHHHHHHHHHHhhhhhhh----cCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHH----cCChHHH
Q 003891 117 RCLAVSPNFEIAKNNMAIALTDLGTKVKL----EGDINQGVAYYKKALYYNW--HYADAMYNLGVAYGE----MLKFDMA 186 (788)
Q Consensus 117 ~al~~~p~~~~~~~~la~~l~~lg~~~~~----~g~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~----~g~~~~A 186 (788)
++.+. .+..+..+ +|.+|.. .+++++|+.+|+++.+..+ .++.+++++|.+|.. .+++++|
T Consensus 78 ~A~~~--g~~~a~~~-------Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A 148 (212)
T 3rjv_A 78 KAVEA--GSKSGEIV-------LARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKA 148 (212)
T ss_dssp HHHHT--TCHHHHHH-------HHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHH
T ss_pred HHHHC--CCHHHHHH-------HHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHH
Confidence 99764 55555444 4555544 7899999999999999887 358999999999999 8999999
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHc-C-----CHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 003891 187 IVFYELAFHFNPHCAEACNNLGVIYKDR-D-----NLDKAVECYQMALSIKPNFSQSLNNLG 242 (788)
Q Consensus 187 ~~~~~~al~~~p~~~~~~~~la~~~~~~-g-----~~~eA~~~~~~al~~~p~~~~~~~~la 242 (788)
+.+|+++++. +.+..+++++|.+|... | ++++|+.+|+++.+... ..+...++
T Consensus 149 ~~~~~~A~~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~--~~A~~~l~ 207 (212)
T 3rjv_A 149 SEYFKGSSSL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF--DTGCEEFD 207 (212)
T ss_dssp HHHHHHHHHT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC--HHHHHHHH
T ss_pred HHHHHHHHHc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC--HHHHHHHH
Confidence 9999999998 66778999999999874 3 89999999999998743 44444443
No 123
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=99.57 E-value=9.6e-15 Score=149.39 Aligned_cols=212 Identities=13% Similarity=0.030 Sum_probs=167.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH-------HHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHH-H-
Q 003891 62 YNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNM-------GVIYKNRGDLESAIACYERCLAVSPNFEIAKNN-M- 132 (788)
Q Consensus 62 ~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~l-------a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~-l- 132 (788)
+..|.-+ ..+++..|.+.|.++++.+|..+++|..+ +.++...++..+++..+++.+.+.|.....++. .
T Consensus 11 ~~~~~~~-~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g 89 (282)
T 4f3v_A 11 FESAVSM-LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGG 89 (282)
T ss_dssp HHHHHHH-TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCT
T ss_pred HHHHhcc-cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCC
Confidence 3334444 46777777777777777777777777777 677777777777777777777776654433333 1
Q ss_pred ------------HHHHHHhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC
Q 003891 133 ------------AIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHC 200 (788)
Q Consensus 133 ------------a~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 200 (788)
-.+....+..+...|++++|.+.|+..+...|++. ..+.+|.++.+.+++++|+..|+++.+..+..
T Consensus 90 ~y~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~ 168 (282)
T 4f3v_A 90 LYGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKWPDKF 168 (282)
T ss_dssp TTCCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHH
T ss_pred cccccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHHHcCCHHHHHHHHHHhhccCCcc
Confidence 12233344556667899999999999999999888 99999999999999999999999887654221
Q ss_pred --HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 003891 201 --AEACNNLGVIYKDRDNLDKAVECYQMALSIK--PN-FSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNL 275 (788)
Q Consensus 201 --~~~~~~la~~~~~~g~~~eA~~~~~~al~~~--p~-~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~l 275 (788)
..+++++|.++..+|++++|+.+|++++... |. ..++++++|.++.++|+.++|...|++++..+|+ ..++..|
T Consensus 169 ~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL 247 (282)
T 4f3v_A 169 LAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAAL 247 (282)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHH
T ss_pred cHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHH
Confidence 4589999999999999999999999998654 55 5679999999999999999999999999999999 7776655
Q ss_pred H
Q 003891 276 G 276 (788)
Q Consensus 276 a 276 (788)
.
T Consensus 248 ~ 248 (282)
T 4f3v_A 248 K 248 (282)
T ss_dssp H
T ss_pred h
Confidence 3
No 124
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.57 E-value=1e-14 Score=152.28 Aligned_cols=193 Identities=14% Similarity=0.085 Sum_probs=131.9
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC
Q 003891 26 VLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNR 105 (788)
Q Consensus 26 ~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~ 105 (788)
.++.+|..++..|++++|+..|+++++.+|++..+++++|.+|...|++++|+..++++++.+|++..+++.+|.+|...
T Consensus 6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~ 85 (281)
T 2c2l_A 6 ELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEM 85 (281)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 47778888888899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHH
Q 003891 106 GDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDM 185 (788)
Q Consensus 106 g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 185 (788)
|++++|+..|+++++++|++............. ..++........
T Consensus 86 g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~----------~~~~~~~~~~~~------------------------- 130 (281)
T 2c2l_A 86 ESYDEAIANLQRAYSLAKEQRLNFGDDIPSALR----------IAKKKRWNSIEE------------------------- 130 (281)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHH----------HHHHHHHHHHHH-------------------------
T ss_pred CCHHHHHHHHHHHHHhCccchhhHHHHHHHHHH----------HHHHHHHHHHHH-------------------------
Confidence 999999999999998877543111111111101 111111111111
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHh
Q 003891 186 AIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQ-GKMDAAAEMIEKAIAA 264 (788)
Q Consensus 186 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~-g~~~eA~~~l~kal~~ 264 (788)
...+.+..+...++.++ .|++++|++.++++++.+|++......++.++... +.+++|.+.|+++.+.
T Consensus 131 ---------~~~~~~~~i~~~l~~l~--~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 131 ---------RRIHQESELHSYLTRLI--AAERERELEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp ---------TCCCCCCHHHHHHHHHH--HHHHHHHHTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred ---------HHHhhhHHHHHHHHHHH--HHHHHHHHHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 23333344444444433 46666666666666666666666555665555554 5566777777766553
No 125
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.55 E-value=7.1e-16 Score=165.51 Aligned_cols=199 Identities=16% Similarity=0.163 Sum_probs=150.8
Q ss_pred CChHHHHHHHHH----HHHhCCCCHHHHHHHHHHHH------------HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 003891 38 GNTQDGIQKYYE----ALKIDPHYAPAYYNLGVVYS------------ELMQYDTALGCYEKAALERPMYAEAYCNMGVI 101 (788)
Q Consensus 38 g~~~~A~~~~~~----al~~~p~~~~~~~~lg~~~~------------~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~ 101 (788)
+.+++|+..+++ ++.+.|.. +|..+|.... .++++++|+..++++++.+|..+.++..+|.+
T Consensus 79 ~~~e~al~~~~~Ge~~~l~i~p~~--ayg~~g~~~~~i~~~~~l~f~~~L~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~ 156 (336)
T 1p5q_A 79 YGLERAIQRMEKGEHSIVYLKPSY--AFGSVGKEKFQIPPNAELKYELHLKSFEKAKESWEMNSEEKLEQSTIVKERGTV 156 (336)
T ss_dssp HHHHHHHTTCCTTCEEEEEECTTT--TTTTTCBGGGTBCSSCCEEEEEEEEEEECCCCGGGCCHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHhcCCCCCeEEEEECCcc--ccCcCCCCccCCCCCCeEEEEEEEeecccccchhcCCHHHHHHHHHHHHHHHHH
Confidence 467788888888 77788876 5555554432 56778889999999999999999999999999
Q ss_pred HHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 003891 102 YKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEML 181 (788)
Q Consensus 102 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 181 (788)
+...|++++|+..|++++++.|++... ..+ ...+..+....++.++|.++..+|
T Consensus 157 ~~~~g~~~~A~~~y~~Al~~~p~~~~~-------------------~~~-------~~~~~~~~~~~~~~nla~~~~~~g 210 (336)
T 1p5q_A 157 YFKEGKYKQALLQYKKIVSWLEYESSF-------------------SNE-------EAQKAQALRLASHLNLAMCHLKLQ 210 (336)
T ss_dssp HHHHTCHHHHHHHHHHHHHHTTTCCCC-------------------CSH-------HHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHCCCHHHHHHHHHHHHHHhhccccC-------------------ChH-------HHHHHHHHHHHHHHHHHHHHHHcC
Confidence 999999999999999999999986310 001 111222233456777777788888
Q ss_pred ChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHH-HHHHHH
Q 003891 182 KFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAA-AEMIEK 260 (788)
Q Consensus 182 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA-~~~l~k 260 (788)
++++|+..|+++++++|++..+++++|.+|..+|++++|+.+|+++++++|++..++..++.++..+|++++| ...|++
T Consensus 211 ~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~ 290 (336)
T 1p5q_A 211 AFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYAN 290 (336)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888888877788888888888888888888888888888888877888888888888887777 456666
Q ss_pred HHHh
Q 003891 261 AIAA 264 (788)
Q Consensus 261 al~~ 264 (788)
++..
T Consensus 291 ~~~~ 294 (336)
T 1p5q_A 291 MFER 294 (336)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6654
No 126
>3c48_A Predicted glycosyltransferases; retaining glycosyltransferase, beta alpha beta, substrate AS catalysis; 2.10A {Corynebacterium glutamicum} PDB: 3c4v_A* 3c4q_A*
Probab=99.54 E-value=4.4e-14 Score=157.30 Aligned_cols=184 Identities=15% Similarity=0.107 Sum_probs=147.7
Q ss_pred CCCCCCeEEEecCCC--CcCCHHHHHHHHHHHhHcC--CcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCC
Q 003891 521 ALTNGFITFGSFNNL--AKITPKVLQVWARILCAVP--NSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILL 596 (788)
Q Consensus 521 ~~~~~~~~f~~~~~~--~K~~~~~~~~~~~il~~~p--~~~l~l~~~~~~~~~~~~~l~~~~~~~gi~~~rv~~~~~~~~ 596 (788)
+++++.+++++++++ .|..+.++++|.++.+..| +.+|+++|.+....+..+.+++.++++|+. ++|.|.|.++
T Consensus 238 ~~~~~~~~i~~~G~~~~~Kg~~~li~a~~~l~~~~p~~~~~l~i~G~~~~~g~~~~~l~~~~~~~~l~-~~v~~~g~~~- 315 (438)
T 3c48_A 238 GIPLHTKVVAFVGRLQPFKGPQVLIKAVAALFDRDPDRNLRVIICGGPSGPNATPDTYRHMAEELGVE-KRIRFLDPRP- 315 (438)
T ss_dssp TCCSSSEEEEEESCBSGGGCHHHHHHHHHHHHHHCTTCSEEEEEECCBC------CHHHHHHHHTTCT-TTEEEECCCC-
T ss_pred CCCCCCcEEEEEeeecccCCHHHHHHHHHHHHhhCCCcceEEEEEeCCCCCCcHHHHHHHHHHHcCCC-CcEEEcCCCC-
Confidence 455677888888876 7999999999999999988 799999987221125677888999999998 8999999987
Q ss_pred cHHHHHhcccccEeecCCCC-CCchhHHHHhhhCCceeecCCCccCccchhHHHhhhCCccccc--CCHHHHHHHHHHHh
Q 003891 597 NHDHMQAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIA--KNEDEYVQLALQLA 673 (788)
Q Consensus 597 ~~~~~~~~~~~Dv~Ld~~~~-~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l~~~gl~~~ia--~~~~~y~~~a~~l~ 673 (788)
.++....|+.+|+++-|+.+ +.+++++|||++|+|||+.....+.. ++ .-|..+++. .|.+++++...++.
T Consensus 316 ~~~~~~~~~~adv~v~ps~~e~~~~~~~Eama~G~PvI~~~~~~~~e-----~i-~~~~~g~~~~~~d~~~la~~i~~l~ 389 (438)
T 3c48_A 316 PSELVAVYRAADIVAVPSFNESFGLVAMEAQASGTPVIAARVGGLPI-----AV-AEGETGLLVDGHSPHAWADALATLL 389 (438)
T ss_dssp HHHHHHHHHHCSEEEECCSCCSSCHHHHHHHHTTCCEEEESCTTHHH-----HS-CBTTTEEEESSCCHHHHHHHHHHHH
T ss_pred hHHHHHHHHhCCEEEECccccCCchHHHHHHHcCCCEEecCCCChhH-----Hh-hCCCcEEECCCCCHHHHHHHHHHHH
Confidence 68899999999999999977 66999999999999999844221111 11 113344454 38999999999999
Q ss_pred cCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHH
Q 003891 674 SDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRNMWHR 715 (788)
Q Consensus 674 ~d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~ 715 (788)
+|++.+.+++++.++...+ |+++.+++.+++.|+++..+
T Consensus 390 ~~~~~~~~~~~~~~~~~~~---~s~~~~~~~~~~~~~~~~~~ 428 (438)
T 3c48_A 390 DDDETRIRMGEDAVEHART---FSWAATAAQLSSLYNDAIAN 428 (438)
T ss_dssp HCHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHT
T ss_pred cCHHHHHHHHHHHHHHHHh---CCHHHHHHHHHHHHHHHhhh
Confidence 9999999999999888653 89999999999999999875
No 127
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.54 E-value=1.1e-14 Score=136.13 Aligned_cols=121 Identities=11% Similarity=0.026 Sum_probs=114.7
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 003891 152 GVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIK 231 (788)
Q Consensus 152 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~ 231 (788)
+-..|++++..+|++...++.+|.++...|++++|+..|++++..+|.+..+++++|.++...|++++|+.+|+++++++
T Consensus 6 ~~~~~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~ 85 (148)
T 2vgx_A 6 GGGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD 85 (148)
T ss_dssp CCCSHHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred hhhhHHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 34568889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 003891 232 PNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAY 272 (788)
Q Consensus 232 p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~ 272 (788)
|+++.+++++|.+|...|++++|+..|++++++.|+++...
T Consensus 86 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 126 (148)
T 2vgx_A 86 IXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFX 126 (148)
T ss_dssp TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGH
T ss_pred CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcch
Confidence 99999999999999999999999999999999998876543
No 128
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.54 E-value=2.7e-14 Score=149.07 Aligned_cols=197 Identities=14% Similarity=0.060 Sum_probs=115.4
Q ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHH
Q 003891 91 YAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAM 170 (788)
Q Consensus 91 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 170 (788)
++..+..+|..+...|++++|+..|+++++.+|++...+.+++. ++...|++++|+..++++++++|++..++
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~-------~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 75 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRAL-------CYLKMQQPEQALADCRRALELDGQSVKAH 75 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHH-------HHHHTTCHHHHHHHHHHHTTSCTTCHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHH-------HHHHhcCHHHHHHHHHHHHHhCCCCHHHH
Confidence 34444455555555555555555555555555544333322222 22223355555555555555555555566
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC
Q 003891 171 YNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGK 250 (788)
Q Consensus 171 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 250 (788)
+.+|.++...|++++|+..|+++++++|++...+........ +..++...........+.+..+...++.++ .|+
T Consensus 76 ~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~i~~~l~~l~--~~~ 150 (281)
T 2c2l_A 76 FFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSAL---RIAKKKRWNSIEERRIHQESELHSYLTRLI--AAE 150 (281)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHH---HHHHHHHHHHHHHTCCCCCCHHHHHHHHHH--HHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHH---HHHHHHHHHHHHHHHHhhhHHHHHHHHHHH--HHH
Confidence 666666666666666666666666665543211111111111 112223333344455677777777777654 689
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhhC
Q 003891 251 MDAAAEMIEKAIAANPTYAEAYNNLGVLYRDA-GSISLAIDAYEQCLKID 299 (788)
Q Consensus 251 ~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~-g~~~eA~~~~~~al~l~ 299 (788)
+++|++.++++++.+|++......++.++.+. +.+++|.+.|+++.+..
T Consensus 151 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~~ 200 (281)
T 2c2l_A 151 RERELEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEKR 200 (281)
T ss_dssp HHHHHTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCTT
T ss_pred HHHHHHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 99999999999999999888888888877776 77889999999887643
No 129
>2jjm_A Glycosyl transferase, group 1 family protein; anthrax, nucleotide, carbohydrate; 3.10A {Bacillus anthracis} PDB: 3mbo_A*
Probab=99.53 E-value=3.4e-14 Score=155.90 Aligned_cols=276 Identities=16% Similarity=0.138 Sum_probs=180.7
Q ss_pred HHHHHHHHhCCCcEEEeCCCCCCCCcccccccC----CCCeEEecccCCC-CCC------------CCCccEEEecCCCC
Q 003891 423 KKVAAMVREDKIDILVELTGHTANNKLGMMACQ----PAPVQVTWIGYPN-TTG------------LPTIDYRITDSLAD 485 (788)
Q Consensus 423 ~~~a~~i~~d~idilvdl~g~t~~~~~~~~a~r----~Apvq~~~~g~~~-ttg------------~~~~Dy~i~d~~~~ 485 (788)
..+.+.|+..++||++--.++.. .....++.+ -.|+-++..|... ..+ +...|.+|+-.-..
T Consensus 89 ~~l~~~l~~~~~Dvv~~~~~~~~-~~~~~~~~~~~~~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~ad~ii~~s~~~ 167 (394)
T 2jjm_A 89 SKMAEVAQRENLDILHVHYAIPH-AICAYLAKQMIGERIKIVTTLHGTDITVLGSDPSLNNLIRFGIEQSDVVTAVSHSL 167 (394)
T ss_dssp HHHHHHHHHHTCSEEEECSSTTH-HHHHHHHHHHTTTCSEEEEECCHHHHHTTTTCTTTHHHHHHHHHHSSEEEESCHHH
T ss_pred HHHHHHHHHcCCCEEEEcchhHH-HHHHHHHHHhhcCCCCEEEEEecCcccccCCCHHHHHHHHHHHhhCCEEEECCHHH
Confidence 35677888899999975333221 112222222 3676555554211 011 12256666532111
Q ss_pred CcCccCCC--ccceEEcCCCccccCCCCCCCCC----CCCCCCCCCCeEEEecCCC--CcCCHHHHHHHHHHHhHcCCcE
Q 003891 486 PPETKQKH--VEELIRLPECFLCYTPSPEAGPV----CPTPALTNGFITFGSFNNL--AKITPKVLQVWARILCAVPNSR 557 (788)
Q Consensus 486 p~~~~~~~--~e~l~~lp~~~~~~~~~~~~~~~----~~~~~~~~~~~~f~~~~~~--~K~~~~~~~~~~~il~~~p~~~ 557 (788)
-......+ .+++..+|++. .+....+.. +...+++++.+++++++++ .|..+.++++|.++.+. ++.+
T Consensus 168 ~~~~~~~~~~~~~~~vi~ngv---~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~~~Kg~~~li~a~~~l~~~-~~~~ 243 (394)
T 2jjm_A 168 INETHELVKPNKDIQTVYNFI---DERVYFKRDMTQLKKEYGISESEKILIHISNFRKVKRVQDVVQAFAKIVTE-VDAK 243 (394)
T ss_dssp HHHHHHHTCCSSCEEECCCCC---CTTTCCCCCCHHHHHHTTCC---CEEEEECCCCGGGTHHHHHHHHHHHHHS-SCCE
T ss_pred HHHHHHhhCCcccEEEecCCc---cHHhcCCcchHHHHHHcCCCCCCeEEEEeeccccccCHHHHHHHHHHHHhh-CCCE
Confidence 00111112 36788888642 111111110 1123454666788888876 79999999999999877 6789
Q ss_pred EEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHHHHhcccccEeecCCCC-CCchhHHHHhhhCCceeecC
Q 003891 558 LVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMA 636 (788)
Q Consensus 558 l~l~~~~~~~~~~~~~l~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~~Dv~Ld~~~~-~g~~t~~eal~~GvPvvt~~ 636 (788)
|+++|.+ +....+++.++++|+. ++|.|.|. .++....|+.+|+++-|+.+ +.+++++|||++|+|||+..
T Consensus 244 l~i~G~g----~~~~~l~~~~~~~~l~-~~v~~~g~---~~~~~~~~~~adv~v~ps~~e~~~~~~~EAma~G~PvI~~~ 315 (394)
T 2jjm_A 244 LLLVGDG----PEFCTILQLVKNLHIE-DRVLFLGK---QDNVAELLAMSDLMLLLSEKESFGLVLLEAMACGVPCIGTR 315 (394)
T ss_dssp EEEECCC----TTHHHHHHHHHTTTCG-GGBCCCBS---CSCTHHHHHTCSEEEECCSCCSCCHHHHHHHHTTCCEEEEC
T ss_pred EEEECCc----hHHHHHHHHHHHcCCC-CeEEEeCc---hhhHHHHHHhCCEEEeccccCCCchHHHHHHhcCCCEEEec
Confidence 9999976 4567888899999997 89999996 35677888889999999977 66999999999999999854
Q ss_pred CCccCccchhHHHhhhCCcccccC--CHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHH
Q 003891 637 GSVHAHNVGVSLLTKVGLKHLIAK--NEDEYVQLALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRNMWH 714 (788)
Q Consensus 637 g~~~~~r~~~~~l~~~gl~~~ia~--~~~~y~~~a~~l~~d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~ 714 (788)
...+..-+. -|-.+++.. |.+++++...++.+|++.+.+++++.++...+. |+.+.+++.+++.|+++..
T Consensus 316 ~~~~~e~v~------~~~~g~~~~~~d~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~--~s~~~~~~~~~~~~~~~~~ 387 (394)
T 2jjm_A 316 VGGIPEVIQ------HGDTGYLCEVGDTTGVADQAIQLLKDEELHRNMGERARESVYEQ--FRSEKIVSQYETIYYDVLR 387 (394)
T ss_dssp CTTSTTTCC------BTTTEEEECTTCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHH--SCHHHHHHHHHHHHHHTC-
T ss_pred CCChHHHhh------cCCceEEeCCCCHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHh--CCHHHHHHHHHHHHHHHHh
Confidence 332222111 123344443 899999999999999999999999998876433 8999999999999999887
Q ss_pred HHhcC
Q 003891 715 RYCKG 719 (788)
Q Consensus 715 ~~~~~ 719 (788)
+...|
T Consensus 388 ~~~~~ 392 (394)
T 2jjm_A 388 DDKNG 392 (394)
T ss_dssp -----
T ss_pred hhhcc
Confidence 76554
No 130
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.53 E-value=5.2e-14 Score=130.49 Aligned_cols=120 Identities=10% Similarity=0.007 Sum_probs=100.2
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 003891 188 VFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPT 267 (788)
Q Consensus 188 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~ 267 (788)
..|++++..+|++...++.+|..+...|++++|+..|++++..+|+++.++..+|.++...|++++|+..|++++.++|+
T Consensus 5 ~~l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 84 (142)
T 2xcb_A 5 GTLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN 84 (142)
T ss_dssp ----CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred hhHHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence 45677777888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhhHH
Q 003891 268 YAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQ 307 (788)
Q Consensus 268 ~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~a~~ 307 (788)
++.+++.+|.+|..+|++++|+++|+++++++|+++....
T Consensus 85 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 124 (142)
T 2xcb_A 85 EPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEA 124 (142)
T ss_dssp CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCGGGHH
T ss_pred CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHH
Confidence 8888888888888888888888888888888887766543
No 131
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.52 E-value=4.5e-13 Score=121.10 Aligned_cols=133 Identities=38% Similarity=0.601 Sum_probs=126.5
Q ss_pred HHHHhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Q 003891 135 ALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDR 214 (788)
Q Consensus 135 ~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 214 (788)
++..+|..+...|++++|+..++++++..|.+...+..+|.++...|++++|+..+++++...|.+...+..+|.++...
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 82 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQ 82 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHh
Confidence 45566777777889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 003891 215 DNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPT 267 (788)
Q Consensus 215 g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~ 267 (788)
|++++|+.+++++++..|.+..++..+|.++...|++++|+.++++++..+|+
T Consensus 83 ~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 83 GDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135 (136)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred cCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence 99999999999999999999999999999999999999999999999999886
No 132
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.52 E-value=5.6e-14 Score=130.25 Aligned_cols=120 Identities=18% Similarity=0.129 Sum_probs=108.2
Q ss_pred HHHHHHHHcCCCChhhHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 003891 4 ASYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEK 83 (788)
Q Consensus 4 ~~~~kaL~~~P~~~~a~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~k 83 (788)
..|+++++.+|++... ++.+|..++..|++++|+..|+++++.+|+++.+|+.+|.++...|++++|+..|++
T Consensus 5 ~~l~~al~~~p~~~~~-------~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 77 (142)
T 2xcb_A 5 GTLAMLRGLSEDTLEQ-------LYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSY 77 (142)
T ss_dssp ----CCTTCCHHHHHH-------HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hhHHHHHcCCHHHHHH-------HHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 4677888888887666 777888889999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHH
Q 003891 84 AALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKN 130 (788)
Q Consensus 84 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 130 (788)
+++.+|+++.+++.+|.++...|++++|+..|+++++++|+++....
T Consensus 78 al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 124 (142)
T 2xcb_A 78 GALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEA 124 (142)
T ss_dssp HHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCGGGHH
T ss_pred HHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHH
Confidence 99999999999999999999999999999999999999988764433
No 133
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.51 E-value=5.6e-13 Score=132.11 Aligned_cols=133 Identities=17% Similarity=0.300 Sum_probs=118.3
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Q 003891 169 AMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQ 248 (788)
Q Consensus 169 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~ 248 (788)
.++.+|..+...|++++|+..|++++ +| ++.+++++|.++...|++++|+.+|+++++.+|++..++.++|.++...
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~--~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~ 84 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQ--DP-HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQT 84 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSS--SC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHc--CC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHc
Confidence 46678888889999999999998885 33 6789999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhCCCCH----------------HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChh
Q 003891 249 GKMDAAAEMIEKAIAANPTYA----------------EAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRN 304 (788)
Q Consensus 249 g~~~eA~~~l~kal~~~p~~~----------------~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~ 304 (788)
|++++|++.|+++++..|++. .+++++|.++..+|++++|+++|+++++++|++..
T Consensus 85 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 156 (213)
T 1hh8_A 85 EKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRH 156 (213)
T ss_dssp TCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSGGG
T ss_pred ccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCccccc
Confidence 999999999999999877765 89999999999999999999999999999998644
No 134
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.50 E-value=7.4e-13 Score=138.93 Aligned_cols=176 Identities=11% Similarity=0.008 Sum_probs=95.8
Q ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHhCCCC----
Q 003891 91 YAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHY---- 166 (788)
Q Consensus 91 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---- 166 (788)
....+...+..+...|++++|++.++++++..+...... .....+..+|.++...|++++|+.+++++++..+..
T Consensus 74 ~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~ 152 (293)
T 2qfc_A 74 RKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQ-QFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVY 152 (293)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHH-HHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTT
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHH-HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchH
Confidence 344566677788888888888888888888777654322 223334445555555666666666666666543322
Q ss_pred --HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH----HHHHH
Q 003891 167 --ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFS----QSLNN 240 (788)
Q Consensus 167 --~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~----~~~~~ 240 (788)
..++..+|.+|...|++++|+.+|+++++.. +..+++. .++++
T Consensus 153 ~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~-------------------------------~~~~~~~~~~~~~~~n 201 (293)
T 2qfc_A 153 QNLYIENAIANIYAENGYLKKGIDLFEQILKQL-------------------------------EALHDNEEFDVKVRYN 201 (293)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-------------------------------HHSCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-------------------------------HhcCccccchHHHHHh
Confidence 2344455555555555555555555554210 2222221 34455
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCCHHHH-HHHHHHHHhh
Q 003891 241 LGVVYTVQGKMDAAAEMIEKAIAANPT------YAEAYNNLGVLYRDAGSISLA-IDAYEQCLKI 298 (788)
Q Consensus 241 la~~~~~~g~~~eA~~~l~kal~~~p~------~~~~~~~la~~~~~~g~~~eA-~~~~~~al~l 298 (788)
+|.+|..+|++++|+.++++++++.++ ...+++++|.+|..+|++++| ..+|++++.+
T Consensus 202 lg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 202 HAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 555555555555555555555544221 144555566666666666666 5555555554
No 135
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.49 E-value=1.1e-13 Score=158.48 Aligned_cols=195 Identities=10% Similarity=0.053 Sum_probs=168.6
Q ss_pred HHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhh---hhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC--C
Q 003891 108 LESAIACYERCLAVSPNFEIAKNNMAIALTDLGTK---VKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEML--K 182 (788)
Q Consensus 108 ~~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~~---~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g--~ 182 (788)
.++|++.+++++.++|++..+|...+.++..++.- ......++++++.++++++.+|++..+|...+.++...+ +
T Consensus 45 ~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~~ 124 (567)
T 1dce_A 45 DESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPN 124 (567)
T ss_dssp SHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCC
T ss_pred CHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccccc
Confidence 35667788888888888777777777777665510 000112899999999999999999999999999999999 6
Q ss_pred hHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc-------------
Q 003891 183 FDMAIVFYELAFHFNPHCAEACNNLGVIYKDRD-NLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQ------------- 248 (788)
Q Consensus 183 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~------------- 248 (788)
++++++.++++++.+|.+..+|...+.++...| .+++++++++++++.+|.+..+|..++.++...
T Consensus 125 ~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~~~~ 204 (567)
T 1dce_A 125 WARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLP 204 (567)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSC
T ss_pred HHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccccccccccc
Confidence 799999999999999999999999999999999 999999999999999999999999999999885
Q ss_pred -CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH------------HHHHHHHHHhhCCCC
Q 003891 249 -GKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISL------------AIDAYEQCLKIDPDS 302 (788)
Q Consensus 249 -g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~~e------------A~~~~~~al~l~p~~ 302 (788)
+.+++|++++++++.++|++..+|+.++.++...+++++ |+.+|.++++++|..
T Consensus 205 ~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~f~~~i~~~~~~ 271 (567)
T 1dce_A 205 ENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDVLCCVHVSREEACLSVCFSRPLTVGSRM 271 (567)
T ss_dssp HHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSCEEEEEEETTTTEEEEEEEEEECTTBTT
T ss_pred HHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccceeeeeeccCCceEEEEeccceeccccc
Confidence 568999999999999999999999999999999988766 566678888887764
No 136
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.49 E-value=1.2e-12 Score=123.79 Aligned_cols=132 Identities=18% Similarity=0.185 Sum_probs=100.7
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 003891 167 ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYT 246 (788)
Q Consensus 167 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~ 246 (788)
...+..+|.++...|++++|+..|+++++.+|.+..++..+|.++...|++++|+.+++++++.+|.+..++..+|.++.
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 34566777777777778888888877777777777778888888888888888888888888888887888888888888
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHH--HHHHHHcCCHHHHHHHHHHHHhh
Q 003891 247 VQGKMDAAAEMIEKAIAANPTYAEAYNNL--GVLYRDAGSISLAIDAYEQCLKI 298 (788)
Q Consensus 247 ~~g~~~eA~~~l~kal~~~p~~~~~~~~l--a~~~~~~g~~~eA~~~~~~al~l 298 (788)
..|++++|+.+++++++.+|++..++..+ +..+...|++++|++.++++..+
T Consensus 93 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 146 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSV 146 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHHH
Confidence 88888888888888888888777776444 44477778888888877776544
No 137
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.49 E-value=5.8e-13 Score=120.30 Aligned_cols=110 Identities=15% Similarity=0.088 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Q 003891 169 AMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQ 248 (788)
Q Consensus 169 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~ 248 (788)
.+..+|..+...|++++|+..|+++++.+|++..++.++|.++...|++++|+..|+++++++|++..++..+|.++..+
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~ 85 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAV 85 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444444444444444444444444444444444444444444444444444
Q ss_pred CCHHHHHHHHHHHHHhC------CCCHHHHHHHHHH
Q 003891 249 GKMDAAAEMIEKAIAAN------PTYAEAYNNLGVL 278 (788)
Q Consensus 249 g~~~eA~~~l~kal~~~------p~~~~~~~~la~~ 278 (788)
|++++|+..|+++++++ |++..++..++.+
T Consensus 86 ~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~ 121 (126)
T 3upv_A 86 KEYASALETLDAARTKDAEVNNGSSAREIDQLYYKA 121 (126)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHH
T ss_pred hCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHH
Confidence 44444444444444444 4444444444443
No 138
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.48 E-value=6.1e-13 Score=131.87 Aligned_cols=152 Identities=17% Similarity=0.205 Sum_probs=133.6
Q ss_pred HHHHHhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 003891 134 IALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKD 213 (788)
Q Consensus 134 ~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 213 (788)
..++.+|..+...|++++|+..|++++ + .++.++..+|.++...|++++|+..|+++++.+|++..+++++|.++..
T Consensus 7 ~~~~~~g~~~~~~~~~~~A~~~~~~a~--~-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~ 83 (213)
T 1hh8_A 7 ISLWNEGVLAADKKDWKGALDAFSAVQ--D-PHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQ 83 (213)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTSS--S-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHc--C-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHH
Confidence 345677788888999999999999996 3 3788999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHhhCCCCH----------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 003891 214 RDNLDKAVECYQMALSIKPNFS----------------QSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGV 277 (788)
Q Consensus 214 ~g~~~eA~~~~~~al~~~p~~~----------------~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~ 277 (788)
.|++++|+.+|+++++..|.+. .++.++|.++...|++++|+..++++++++|++.
T Consensus 84 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~-------- 155 (213)
T 1hh8_A 84 TEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPR-------- 155 (213)
T ss_dssp TTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSGG--------
T ss_pred cccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCcccc--------
Confidence 9999999999999999888766 8999999999999999999999999999999863
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCC
Q 003891 278 LYRDAGSISLAIDAYEQCLKIDP 300 (788)
Q Consensus 278 ~~~~~g~~~eA~~~~~~al~l~p 300 (788)
.+..++|+..+++.....|
T Consensus 156 ----~~~~~~a~~~~~~~~~~~~ 174 (213)
T 1hh8_A 156 ----HSKIDKAMECVWKQKLYEP 174 (213)
T ss_dssp ----GGHHHHHHHHHHTTCCCCC
T ss_pred ----cchHHHHHHHHHhcccccc
Confidence 2445666666665544433
No 139
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.48 E-value=1.7e-12 Score=136.08 Aligned_cols=165 Identities=5% Similarity=-0.058 Sum_probs=128.7
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCH------HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-----
Q 003891 166 YADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCA------EACNNLGVIYKDRDNLDKAVECYQMALSIKPNF----- 234 (788)
Q Consensus 166 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~------~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~----- 234 (788)
....+...+..+...|++++|++.++++++..+... ..++.+|.++...|++++|+.+++++++..+..
T Consensus 74 ~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 153 (293)
T 2qfc_A 74 RKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQ 153 (293)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHH
Confidence 344555667777888888888888888887766543 345678888899999999999999999775433
Q ss_pred -HHHHHHHHHHHHHcCCHHHHHHHHHHHH---HhCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCh---
Q 003891 235 -SQSLNNLGVVYTVQGKMDAAAEMIEKAI---AANPTYA----EAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSR--- 303 (788)
Q Consensus 235 -~~~~~~la~~~~~~g~~~eA~~~l~kal---~~~p~~~----~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~--- 303 (788)
..++.++|.+|..+|++++|+.+|++++ +..+++. .+++++|.+|..+|++++|+.++++++++.++..
T Consensus 154 ~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~ 233 (293)
T 2qfc_A 154 NLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMA 233 (293)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCS
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHH
Confidence 5688999999999999999999999999 4456543 6899999999999999999999999998864321
Q ss_pred -hhHHhHHHHhhhccCCCchHH-HHHHHH
Q 003891 304 -NAGQNRLLAMNYINEGHDDKL-FEAHRD 330 (788)
Q Consensus 304 -~a~~~~lla~~~l~~g~~~~~-~~~~~~ 330 (788)
.+.....++..|...|+.+++ ....++
T Consensus 234 ~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~ 262 (293)
T 2qfc_A 234 LIGQLYYQRGECLRKLEYEEAEIEDAYKK 262 (293)
T ss_dssp SHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 133445578888999999888 443433
No 140
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.48 E-value=3.4e-11 Score=139.62 Aligned_cols=112 Identities=6% Similarity=-0.027 Sum_probs=84.7
Q ss_pred HHHHHHHHHcCCCChhhHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC---HHHHHH
Q 003891 3 VASYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQ---YDTALG 79 (788)
Q Consensus 3 i~~~~kaL~~~P~~~~a~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~---~~~A~~ 79 (788)
+..|++.|..+|.+...|..+ .......++++.+...|++++...|.....|......-...++ ++.+..
T Consensus 52 i~~lE~~l~~np~d~~~W~~y-------i~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~ 124 (679)
T 4e6h_A 52 IGKLNDMIEEQPTDIFLYVKL-------LKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEP 124 (679)
T ss_dssp HHHHHHHHHHCTTCHHHHHHH-------HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHH
T ss_pred HHHHHHHHHHCcCCHHHHHHH-------HHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHH
Confidence 567899999999999985544 4445567899999999999999999999999999888888888 999999
Q ss_pred HHHHHHHhCC--CCHHHHHHHHHHHHHCCCH--------HHHHHHHHHHHhh
Q 003891 80 CYEKAALERP--MYAEAYCNMGVIYKNRGDL--------ESAIACYERCLAV 121 (788)
Q Consensus 80 ~~~kal~~~p--~~~~~~~~la~~~~~~g~~--------~~A~~~~~~al~~ 121 (788)
.|++++...| .+...|..........++. +...+.|++|+..
T Consensus 125 lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~ 176 (679)
T 4e6h_A 125 VLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDK 176 (679)
T ss_dssp HHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHH
Confidence 9999998873 5677777666555544432 2333666776653
No 141
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.48 E-value=2.8e-13 Score=130.32 Aligned_cols=128 Identities=17% Similarity=0.212 Sum_probs=98.6
Q ss_pred HHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH-HHHcCCH--HHH
Q 003891 178 GEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVV-YTVQGKM--DAA 254 (788)
Q Consensus 178 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~-~~~~g~~--~eA 254 (788)
...|++++|+..++++++.+|++..++..+|.++...|++++|+.+|+++++.+|+++.++..+|.+ +...|++ ++|
T Consensus 21 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A 100 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQT 100 (177)
T ss_dssp C-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHH
T ss_pred hhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHH
Confidence 3456777777777777777777777777778877788888888888888888888888888888887 6777887 888
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhh
Q 003891 255 AEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNA 305 (788)
Q Consensus 255 ~~~l~kal~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~a 305 (788)
+..++++++.+|++..+++.+|.++...|++++|+.+|+++++++|++...
T Consensus 101 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 151 (177)
T 2e2e_A 101 RAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINR 151 (177)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCH
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccH
Confidence 888888888888888888888888888888888888888888888876543
No 142
>2r60_A Glycosyl transferase, group 1; rossmann-fold; 1.80A {Halothermothrix orenii} PDB: 2r66_A* 2r68_A*
Probab=99.48 E-value=6.6e-13 Score=150.57 Aligned_cols=184 Identities=10% Similarity=0.066 Sum_probs=148.3
Q ss_pred CCCCCeEEEecCCC--CcCCHHHHHHHHHHHhHcCCc-EEEEecCCCCC--------HHH---HHHHHHHHHHcCCCCCc
Q 003891 522 LTNGFITFGSFNNL--AKITPKVLQVWARILCAVPNS-RLVVKCKPFCC--------DSV---RHRFLSTLEQLGLESLR 587 (788)
Q Consensus 522 ~~~~~~~f~~~~~~--~K~~~~~~~~~~~il~~~p~~-~l~l~~~~~~~--------~~~---~~~l~~~~~~~gi~~~r 587 (788)
++.+.+++++++++ .|..+.++++|.++.+..|+. +|+++|.+.+. ... .+.+++.++++|+. ++
T Consensus 258 ~~~~~~~i~~vGrl~~~Kg~~~li~a~~~l~~~~~~~~~l~i~G~~~~~~~~y~~l~~~~~~y~~~l~~~~~~~~l~-~~ 336 (499)
T 2r60_A 258 ERMELPAIIASSRLDQKKNHYGLVEAYVQNKELQDKANLVLTLRGIENPFEDYSRAGQEEKEILGKIIELIDNNDCR-GK 336 (499)
T ss_dssp GGTTSCEEEECSCCCGGGCHHHHHHHHHTCHHHHHHCEEEEEESSCSBTTTBCTTSCHHHHHHHHHHHHHHHHTTCB-TT
T ss_pred cCCCCcEEEEeecCccccCHHHHHHHHHHHHHhCCCceEEEEECCCCCcccccccccccchHHHHHHHHHHHhcCCC-ce
Confidence 45667789999976 899999999999998877776 67887762111 122 78899999999998 89
Q ss_pred EEEcCCcCCcHHHHHhcccc----cEeecCCCC-CCchhHHHHhhhCCceeecCCCccCccchh-HHHhhhCCccccc--
Q 003891 588 VDLLPLILLNHDHMQAYSLM----DISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGV-SLLTKVGLKHLIA-- 659 (788)
Q Consensus 588 v~~~~~~~~~~~~~~~~~~~----Dv~Ld~~~~-~g~~t~~eal~~GvPvvt~~g~~~~~r~~~-~~l~~~gl~~~ia-- 659 (788)
|.|+|.++ .++....|+.+ |+++-|+.+ +.|.+++|||++|+|||+ +++++ .-+..-|..+++.
T Consensus 337 V~~~G~v~-~~~~~~~~~~a~~~~dv~v~pS~~Eg~~~~~lEAma~G~PvI~-------s~~~g~~e~v~~~~~g~l~~~ 408 (499)
T 2r60_A 337 VSMFPLNS-QQELAGCYAYLASKGSVFALTSFYEPFGLAPVEAMASGLPAVV-------TRNGGPAEILDGGKYGVLVDP 408 (499)
T ss_dssp EEEEECCS-HHHHHHHHHHHHHTTCEEEECCSCBCCCSHHHHHHHTTCCEEE-------ESSBHHHHHTGGGTSSEEECT
T ss_pred EEECCCCC-HHHHHHHHHhcCcCCCEEEECcccCCCCcHHHHHHHcCCCEEE-------ecCCCHHHHhcCCceEEEeCC
Confidence 99999987 68899999999 999999977 679999999999999998 44432 1111223344444
Q ss_pred CCHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHHH
Q 003891 660 KNEDEYVQLALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRNMWHRY 716 (788)
Q Consensus 660 ~~~~~y~~~a~~l~~d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~ 716 (788)
.|.+++++...++.+|++.+.+++++.++...+. |+.+.+++.+++.|+++..+.
T Consensus 409 ~d~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~--fs~~~~~~~~~~~y~~~~~~~ 463 (499)
T 2r60_A 409 EDPEDIARGLLKAFESEETWSAYQEKGKQRVEER--YTWQETARGYLEVIQEIADRK 463 (499)
T ss_dssp TCHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHH--SBHHHHHHHHHHHHHHHHHC-
T ss_pred CCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHh--CCHHHHHHHHHHHHHHHHhhh
Confidence 4899999999999999999999999998877543 899999999999999998754
No 143
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.47 E-value=1.3e-12 Score=117.86 Aligned_cols=114 Identities=18% Similarity=0.161 Sum_probs=105.9
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 003891 23 LAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIY 102 (788)
Q Consensus 23 la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~ 102 (788)
.+..+..+|..++..|++++|+..|+++++.+|+++.+++++|.++...|++++|+..|+++++.+|++..+++.+|.++
T Consensus 3 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 82 (126)
T 3upv_A 3 KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 35668999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHCCCHHHHHHHHHHHHhhC------CCcHHHHHHHHHHH
Q 003891 103 KNRGDLESAIACYERCLAVS------PNFEIAKNNMAIAL 136 (788)
Q Consensus 103 ~~~g~~~~A~~~~~~al~~~------p~~~~~~~~la~~l 136 (788)
...|++++|+..|+++++++ |++......+..+.
T Consensus 83 ~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~ 122 (126)
T 3upv_A 83 IAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKAS 122 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHH
Confidence 99999999999999999999 88776665555443
No 144
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.47 E-value=3.8e-13 Score=129.40 Aligned_cols=130 Identities=15% Similarity=0.132 Sum_probs=119.9
Q ss_pred hhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHH-HHHcCCH--HH
Q 003891 143 VKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVI-YKDRDNL--DK 219 (788)
Q Consensus 143 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~-~~~~g~~--~e 219 (788)
+...|++++|+..++++++.+|++..++..+|.++...|++++|+..|+++++.+|++..++..+|.+ +...|++ ++
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~ 99 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQ 99 (177)
T ss_dssp CC-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHH
T ss_pred hhhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHH
Confidence 45578999999999999999999999999999999999999999999999999999999999999999 8899999 99
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 003891 220 AVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAY 272 (788)
Q Consensus 220 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~ 272 (788)
|+.+|+++++.+|++..++..+|.++...|++++|+..|+++++.+|++....
T Consensus 100 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 152 (177)
T 2e2e_A 100 TRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRT 152 (177)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHH
Confidence 99999999999999999999999999999999999999999999999875543
No 145
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.47 E-value=1.4e-12 Score=136.90 Aligned_cols=177 Identities=11% Similarity=-0.012 Sum_probs=101.2
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHhCCCC------HH
Q 003891 95 YCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHY------AD 168 (788)
Q Consensus 95 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~------~~ 168 (788)
+...+..+...|++++|+..++++++..+..+... .....+..+|.++...+++++|+.+++++++..+.. ..
T Consensus 78 l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 3u3w_A 78 FKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQ-QFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHH-HHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHhccccCChHHH-HHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHH
Confidence 33456677788888888888888888776655432 223344445666666666666666666666643322 12
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Q 003891 169 AMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQ 248 (788)
Q Consensus 169 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~ 248 (788)
++.++|.+|...|++++|+.+|+++++..... . ...+....+++++|.+|..+
T Consensus 157 ~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~--------------~-------------~~~~~~~~~~~nlg~~y~~~ 209 (293)
T 3u3w_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEAL--------------H-------------DNEEFDVKVRYNHAKALYLD 209 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS--------------S-------------CCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhc--------------c-------------cchhHHHHHHHHHHHHHHHH
Confidence 34445555555555555555554444210000 0 00111133556666666666
Q ss_pred CCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcC-CHHHHHHHHHHHHhhC
Q 003891 249 GKMDAAAEMIEKAIAANPTY------AEAYNNLGVLYRDAG-SISLAIDAYEQCLKID 299 (788)
Q Consensus 249 g~~~eA~~~l~kal~~~p~~------~~~~~~la~~~~~~g-~~~eA~~~~~~al~l~ 299 (788)
|++++|++++++++++.+.. +.+++++|.+|..+| ++++|+++|++++.+.
T Consensus 210 ~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~ 267 (293)
T 3u3w_A 210 SRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFF 267 (293)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence 66666666666666653222 566777777777777 3577777777777653
No 146
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.47 E-value=5.3e-13 Score=121.11 Aligned_cols=113 Identities=18% Similarity=0.242 Sum_probs=97.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHH
Q 003891 58 APAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALT 137 (788)
Q Consensus 58 ~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~ 137 (788)
+.++.++|..++..|+|++|+.+|+++++++|+++.++.++|.+|..+|++++|++.++++++++|++...+..++.++.
T Consensus 8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~ 87 (127)
T 4gcn_A 8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMS 87 (127)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence 55678889999999999999999999999999999999999999999999999999999999988877666777788889
Q ss_pred HhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 003891 138 DLGTKVKLEGDINQGVAYYKKALYYNWHYADAMY 171 (788)
Q Consensus 138 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 171 (788)
.+|.++...|++++|+++|+++++..|+ ++...
T Consensus 88 ~lg~~~~~~~~~~~A~~~~~kal~~~~~-~~~~~ 120 (127)
T 4gcn_A 88 RAGNAFQKQNDLSLAVQWFHRSLSEFRD-PELVK 120 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSCC-HHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCcC-HHHHH
Confidence 9999999999999999999999988875 44433
No 147
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.46 E-value=7.9e-13 Score=125.61 Aligned_cols=115 Identities=27% Similarity=0.373 Sum_probs=106.3
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 003891 198 PHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGV 277 (788)
Q Consensus 198 p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~ 277 (788)
+.+...+..+|.++...|++++|+.+|+++++.+|++..++.++|.+|...|++++|+..|+++++++|++..+++.+|.
T Consensus 8 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 87 (164)
T 3sz7_A 8 TPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGL 87 (164)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 44577899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCChhhHHhHHHH
Q 003891 278 LYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLA 312 (788)
Q Consensus 278 ~~~~~g~~~eA~~~~~~al~l~p~~~~a~~~~lla 312 (788)
+|..+|++++|+.+|+++++++|++..++..+.+.
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 122 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLE 122 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 99999999999999999999999999877665444
No 148
>3s28_A Sucrose synthase 1; glycosyltransferase, sucrose metabolism, sugar donar complex rossmann fold, GT-B fold, glycosyltansferase, UDP-glucose; HET: UDP LCN NHF; 2.80A {Arabidopsis thaliana} PDB: 3s27_A* 3s29_A*
Probab=99.46 E-value=5.4e-13 Score=156.59 Aligned_cols=186 Identities=11% Similarity=0.055 Sum_probs=146.7
Q ss_pred CCCCeEEEecCCC--CcCCHHHHHHHHHHHhHcCCcEEEEecCCCC-------CHHHHHHHHHHHHHcCCCCCcEEEcCC
Q 003891 523 TNGFITFGSFNNL--AKITPKVLQVWARILCAVPNSRLVVKCKPFC-------CDSVRHRFLSTLEQLGLESLRVDLLPL 593 (788)
Q Consensus 523 ~~~~~~f~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~-------~~~~~~~l~~~~~~~gi~~~rv~~~~~ 593 (788)
+.+.+++++++++ .|..+.+++++.++.+..|+.+|+|+|++.. .......+++.+++.|+. ++|.|+|.
T Consensus 569 ~~~~~vIl~vGRl~~~KGid~LIeA~~~L~~~~~~v~LvIvG~g~~~~~~~~e~~~~~~~L~~li~~lgL~-~~V~flG~ 647 (816)
T 3s28_A 569 DKKKPILFTMARLDRVKNLSGLVEWYGKNTRLRELANLVVVGGDRRKESKDNEEKAEMKKMYDLIEEYKLN-GQFRWISS 647 (816)
T ss_dssp CTTSCEEEEECCCCTTTTHHHHHHHHHHCHHHHHHCEEEEECCCTTSCCCCHHHHHHHHHHHHHHHHTTCB-BBEEEECC
T ss_pred CCCCeEEEEEccCcccCCHHHHHHHHHHHHhhCCCeEEEEEeCCCcccccchhhHHHHHHHHHHHHHcCCC-CcEEEccC
Confidence 5566788888876 8999999999999998889999999998731 012678899999999998 99999996
Q ss_pred cCC---cHHHHHhcc-cccEeecCCCC-CCchhHHHHhhhCCceeecCCCccCccchh-HHHhhhCCccccc--CCHHHH
Q 003891 594 ILL---NHDHMQAYS-LMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGV-SLLTKVGLKHLIA--KNEDEY 665 (788)
Q Consensus 594 ~~~---~~~~~~~~~-~~Dv~Ld~~~~-~g~~t~~eal~~GvPvvt~~g~~~~~r~~~-~~l~~~gl~~~ia--~~~~~y 665 (788)
+.+ .++....|. .+||++-|+.+ +.|.+.+|||++|+|||+ +++|+ .-+..-|..+++. .|++++
T Consensus 648 ~~~~v~~~eL~~~~~~aaDvfV~PS~~EgfglvllEAMA~G~PVIa-------sd~GG~~EiV~dg~~Gllv~p~D~e~L 720 (816)
T 3s28_A 648 QMDRVRNGELYRYICDTKGAFVQPALYEAFGLTVVEAMTCGLPTFA-------TCKGGPAEIIVHGKSGFHIDPYHGDQA 720 (816)
T ss_dssp CCCHHHHHHHHHHHHHTTCEEEECCSCBSSCHHHHHHHHTTCCEEE-------ESSBTHHHHCCBTTTBEEECTTSHHHH
T ss_pred ccccCCHHHHHHHHHhcCeEEEECCCccCccHHHHHHHHcCCCEEE-------eCCCChHHHHccCCcEEEeCCCCHHHH
Confidence 543 366777776 68999999977 779999999999999998 44542 1111114444443 389999
Q ss_pred HHHHHHHh----cCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHH--HHHHhc
Q 003891 666 VQLALQLA----SDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRNM--WHRYCK 718 (788)
Q Consensus 666 ~~~a~~l~----~d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~~~--~~~~~~ 718 (788)
++...++. .|++.+++++++.++.+.+. |+++.+++++++.|+.. |+....
T Consensus 721 A~aI~~lL~~Ll~d~~~~~~m~~~ar~~a~~~--fSwe~~a~~ll~lY~~~g~wk~vs~ 777 (816)
T 3s28_A 721 ADTLADFFTKCKEDPSHWDEISKGGLQRIEEK--YTWQIYSQRLLTLTGVYGFWKHVSN 777 (816)
T ss_dssp HHHHHHHHHHHHHCTHHHHHHHHHHHHHHHHS--CCHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHHHHHHh--CCHHHHHHHHHHHHHHHhHhhhcch
Confidence 99886665 89999999999999987554 89999999999999974 655443
No 149
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.46 E-value=3.5e-12 Score=132.15 Aligned_cols=246 Identities=14% Similarity=0.009 Sum_probs=188.0
Q ss_pred HHHHcCChHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHH
Q 003891 33 SLKLAGNTQDGIQKYYEALKIDPHY-APAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESA 111 (788)
Q Consensus 33 ~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g~~~~A 111 (788)
-.+-.|+|.+++.-. -+..|.+ ....+.+.++|..+|++.... ..+....+...++..+. ++ |
T Consensus 22 n~fy~G~yq~~i~e~---~~~~~~~~~~~~~~~~Rs~iAlg~~~~~~--------~~~~~~~a~~~la~~~~--~~---a 85 (310)
T 3mv2_B 22 QNYYTGNFVQCLQEI---EKFSKVTDNTLLFYKAKTLLALGQYQSQD--------PTSKLGKVLDLYVQFLD--TK---N 85 (310)
T ss_dssp HHHTTTCHHHHTHHH---HTSSCCCCHHHHHHHHHHHHHTTCCCCCC--------SSSTTHHHHHHHHHHHT--TT---C
T ss_pred HHHHhhHHHHHHHHH---HhcCccchHHHHHHHHHHHHHcCCCccCC--------CCCHHHHHHHHHHHHhc--cc---H
Confidence 345679999999843 3344443 456677788899999887421 12223335555555442 22 8
Q ss_pred HHHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCChHHHHHH
Q 003891 112 IACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNW--HYADAMYNLGVAYGEMLKFDMAIVF 189 (788)
Q Consensus 112 ~~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~~g~~~~A~~~ 189 (788)
+..+++.++..+...... ..+|.++...|++++|++.+.+.+..+| .+.+++..++.++..+|+.+.|.+.
T Consensus 86 ~~~l~~l~~~~~~~~~~~-------~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~ 158 (310)
T 3mv2_B 86 IEELENLLKDKQNSPYEL-------YLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTI 158 (310)
T ss_dssp CHHHHHTTTTSCCCHHHH-------HHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHhcCCCCcHHH-------HHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHH
Confidence 899999887754444332 3456666667899999999999999887 7889999999999999999999999
Q ss_pred HHHHHhcCCC----CHHHHHHH--HHHHHHcC--CHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHH
Q 003891 190 YELAFHFNPH----CAEACNNL--GVIYKDRD--NLDKAVECYQMALSIKPN--FSQSLNNLGVVYTVQGKMDAAAEMIE 259 (788)
Q Consensus 190 ~~~al~~~p~----~~~~~~~l--a~~~~~~g--~~~eA~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~eA~~~l~ 259 (788)
++++.+.+|+ +......+ +++....| ++.+|...|+++.+..|+ ....+++ ++..+|++++|.+.++
T Consensus 159 l~~~~~~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln---~~~~~g~~~eAe~~L~ 235 (310)
T 3mv2_B 159 FDNYTNAIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLN---LHLQQRNIAEAQGIVE 235 (310)
T ss_dssp HHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHH---HHHHHTCHHHHHHHHH
T ss_pred HHHHHhcCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHH---HHHHcCCHHHHHHHHH
Confidence 9999999883 23334444 54466556 999999999999888887 3334444 8999999999999999
Q ss_pred HHHHh----------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhhH
Q 003891 260 KAIAA----------NPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAG 306 (788)
Q Consensus 260 kal~~----------~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~a~ 306 (788)
++++. +|++++++.+++.+...+|+ +|.++++++.+.+|+++-..
T Consensus 236 ~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~ 290 (310)
T 3mv2_B 236 LLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFIK 290 (310)
T ss_dssp HHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHHH
T ss_pred HHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHHH
Confidence 88776 48899999999999999998 89999999999999988654
No 150
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.46 E-value=4.3e-12 Score=119.84 Aligned_cols=138 Identities=21% Similarity=0.192 Sum_probs=122.3
Q ss_pred HHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 003891 20 AECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMG 99 (788)
Q Consensus 20 ~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~la 99 (788)
....+..++.+|..+...|++++|+..|+++++.+|.+..+++.+|.++...|++++|+..++++++.+|.+..++..+|
T Consensus 9 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a 88 (166)
T 1a17_A 9 ALKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRA 88 (166)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHH
Confidence 34567889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHh
Q 003891 100 VIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYY 162 (788)
Q Consensus 100 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~ 162 (788)
.++...|++++|+.+|+++++++|++...+..++. +..+...|++++|+..+++....
T Consensus 89 ~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~-----~~~~~~~~~~~~A~~~~~~~~~~ 146 (166)
T 1a17_A 89 ASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQE-----CNKIVKQKAFERAIAGDEHKRSV 146 (166)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHH-----HHHHHHHHHHHHHHHcccchHHH
Confidence 99999999999999999999999998866543333 33334467888888888876543
No 151
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.45 E-value=1.2e-12 Score=118.57 Aligned_cols=121 Identities=16% Similarity=0.148 Sum_probs=97.8
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 003891 164 WHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGV 243 (788)
Q Consensus 164 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~ 243 (788)
|....++..+|.++...|++++|+..|+++++.+|.+..++..+|.++...|++++|+.+++++++.+|.+..++..+|.
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~ 92 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAA 92 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence 44566778888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 003891 244 VYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGS 284 (788)
Q Consensus 244 ~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~ 284 (788)
++...|++++|+.+++++++.+|++..++..++.++..+|+
T Consensus 93 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 93 ALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 88888888888888888888888888888888888777664
No 152
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.45 E-value=1.4e-13 Score=135.31 Aligned_cols=151 Identities=20% Similarity=0.154 Sum_probs=117.7
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCH----------------HHHHHHHH
Q 003891 146 EGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCA----------------EACNNLGV 209 (788)
Q Consensus 146 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~----------------~~~~~la~ 209 (788)
.++++++.+.++......+.....+..+|..+...|++++|+..|+++++..|.+. .++.++|.
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~ 96 (198)
T 2fbn_A 17 LYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLAT 96 (198)
T ss_dssp -----CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHH
Confidence 45666666666655555555667788888888888999999999998888887776 78889999
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Q 003891 210 IYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAI 289 (788)
Q Consensus 210 ~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~~eA~ 289 (788)
++...|++++|+.+++++++.+|++..+++.+|.++..+|++++|+..|+++++++|++..++..++.++..+++..++.
T Consensus 97 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~ 176 (198)
T 2fbn_A 97 CYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEARKKD 176 (198)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999988888877776
Q ss_pred -HHHHHHH
Q 003891 290 -DAYEQCL 296 (788)
Q Consensus 290 -~~~~~al 296 (788)
..|.+.+
T Consensus 177 ~~~~~~~f 184 (198)
T 2fbn_A 177 KLTFGGMF 184 (198)
T ss_dssp --------
T ss_pred HHHHHHHh
Confidence 4444443
No 153
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.45 E-value=1.3e-12 Score=137.01 Aligned_cols=170 Identities=14% Similarity=0.077 Sum_probs=124.4
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHH------HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHH
Q 003891 27 LTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAP------AYYNLGVVYSELMQYDTALGCYEKAALERPMY------AEA 94 (788)
Q Consensus 27 l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~------~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~------~~~ 94 (788)
+...+..+...|++++|+..++++++..+.... .+..+|.++...+++++|+.+|+++++..+.. ..+
T Consensus 78 l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~ 157 (293)
T 3u3w_A 78 FKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYI 157 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHH
Confidence 455677888999999999999999998776654 33458999999999999999999999964432 447
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHhCCCC------HH
Q 003891 95 YCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHY------AD 168 (788)
Q Consensus 95 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~------~~ 168 (788)
+.++|.+|...|++++|+.+|+++++............+.++..+|.++...|++++|+.++++++++.+.. ..
T Consensus 158 ~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~ 237 (293)
T 3u3w_A 158 ENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQ 237 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHH
Confidence 999999999999999999999999964321111122345566677777777777777777777777654322 45
Q ss_pred HHHHHHHHHHHcCC-hHHHHHHHHHHHhc
Q 003891 169 AMYNLGVAYGEMLK-FDMAIVFYELAFHF 196 (788)
Q Consensus 169 ~~~~la~~~~~~g~-~~~A~~~~~~al~~ 196 (788)
+++.+|.++..+|+ +++|+++|++++.+
T Consensus 238 ~~~~lg~~~~~~g~~~~~A~~~~~~Al~i 266 (293)
T 3u3w_A 238 LYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 66666666666663 46666666666543
No 154
>3qhp_A Type 1 capsular polysaccharide biosynthesis prote (CAPJ); rossmann fold, glycosyltransferase, transferase; 1.50A {Helicobacter pylori}
Probab=99.44 E-value=5.7e-13 Score=126.96 Aligned_cols=158 Identities=8% Similarity=0.071 Sum_probs=119.8
Q ss_pred eEEEecCCC--CcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHHHHhc
Q 003891 527 ITFGSFNNL--AKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAY 604 (788)
Q Consensus 527 ~~f~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~~~~l~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~ 604 (788)
++|++++++ .|..+.++++|.++ +..|+.+|+++|.+ +....+++.+++.|+ ++.| |.++ .++....|
T Consensus 3 ~~i~~~G~~~~~Kg~~~li~a~~~l-~~~~~~~l~i~G~g----~~~~~~~~~~~~~~~---~v~~-g~~~-~~~~~~~~ 72 (166)
T 3qhp_A 3 FKIAMVGRYSNEKNQSVLIKAVALS-KYKQDIVLLLKGKG----PDEKKIKLLAQKLGV---KAEF-GFVN-SNELLEIL 72 (166)
T ss_dssp EEEEEESCCSTTTTHHHHHHHHHTC-TTGGGEEEEEECCS----TTHHHHHHHHHHHTC---EEEC-CCCC-HHHHHHHH
T ss_pred eEEEEEeccchhcCHHHHHHHHHHh-ccCCCeEEEEEeCC----ccHHHHHHHHHHcCC---eEEE-eecC-HHHHHHHH
Confidence 567777765 89999999999886 55699999999976 456788888899888 7888 9987 78999999
Q ss_pred ccccEeecCCCC-CCchhHHHHhhhCC-ceeecC-CCccCccchhHHHhhhCCcccccCCHHHHHHHHHHHhcCHHHHHH
Q 003891 605 SLMDISLDTFPY-AGTTTTCESLYMGV-PCVTMA-GSVHAHNVGVSLLTKVGLKHLIAKNEDEYVQLALQLASDVTALAN 681 (788)
Q Consensus 605 ~~~Dv~Ld~~~~-~g~~t~~eal~~Gv-Pvvt~~-g~~~~~r~~~~~l~~~gl~~~ia~~~~~y~~~a~~l~~d~~~~~~ 681 (788)
+.+|+++-|+.+ +.|.+.+|||++|+ |||+.. +.....-+ ..-+. -+...|.+++++...++.+|++.++.
T Consensus 73 ~~adv~v~ps~~e~~~~~~~Eama~G~vPvi~~~~~~~~~~~~-----~~~~~-~~~~~~~~~l~~~i~~l~~~~~~~~~ 146 (166)
T 3qhp_A 73 KTCTLYVHAANVESEAIACLEAISVGIVPVIANSPLSATRQFA-----LDERS-LFEPNNAKDLSAKIDWWLENKLERER 146 (166)
T ss_dssp TTCSEEEECCCSCCCCHHHHHHHHTTCCEEEECCTTCGGGGGC-----SSGGG-EECTTCHHHHHHHHHHHHHCHHHHHH
T ss_pred HhCCEEEECCcccCccHHHHHHHhcCCCcEEeeCCCCchhhhc-----cCCce-EEcCCCHHHHHHHHHHHHhCHHHHHH
Confidence 999999999977 77999999999996 999832 22221111 11111 23356999999999999999999999
Q ss_pred HHHHHHHHhhcCCCCChHHHHH
Q 003891 682 LRMSLRDLMSKSPVCDGQNFAL 703 (788)
Q Consensus 682 ~r~~~~~~~~~~~~~~~~~~~~ 703 (788)
++++.++... . |+++.+++
T Consensus 147 ~~~~~~~~~~-~--~s~~~~~~ 165 (166)
T 3qhp_A 147 MQNEYAKSAL-N--YTLENSVI 165 (166)
T ss_dssp HHHHHHHHHH-H--HC------
T ss_pred HHHHHHHHHH-H--CChhhhhc
Confidence 9999887653 2 66666553
No 155
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.44 E-value=1.3e-12 Score=117.48 Aligned_cols=121 Identities=22% Similarity=0.281 Sum_probs=94.9
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 003891 165 HYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVV 244 (788)
Q Consensus 165 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~ 244 (788)
.....+..+|..+...|++++|+..+++++...|++..++..+|.++...|++++|+.+++++++..|++..++..+|.+
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 89 (131)
T 2vyi_A 10 AEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLA 89 (131)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHH
Confidence 34556777777777888888888888888877777777788888888888888888888888888888777788888888
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Q 003891 245 YTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSI 285 (788)
Q Consensus 245 ~~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~ 285 (788)
+...|++++|+.+++++++.+|++..++..++.++..+|++
T Consensus 90 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 90 LSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred HHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 88888888888888888888887777788888877777764
No 156
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.44 E-value=4e-12 Score=145.42 Aligned_cols=166 Identities=10% Similarity=0.036 Sum_probs=156.9
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC----------hHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC-
Q 003891 147 GDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLK----------FDMAIVFYELAFHFNPHCAEACNNLGVIYKDRD- 215 (788)
Q Consensus 147 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~----------~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g- 215 (788)
...++|++.++++++.+|++..+|+..+.++...|+ ++++++.++++++.+|++..+|+..+.++.+.+
T Consensus 43 ~~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~ 122 (567)
T 1dce_A 43 ELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPE 122 (567)
T ss_dssp CCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSS
T ss_pred CCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccc
Confidence 345788999999999999999999999999999998 999999999999999999999999999999999
Q ss_pred -CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-----------
Q 003891 216 -NLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQG-KMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDA----------- 282 (788)
Q Consensus 216 -~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g-~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~----------- 282 (788)
++++++++++++++.+|.+..+|...+.++...| .+++++++++++++.+|.+..+|..++.++..+
T Consensus 123 ~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~~ 202 (567)
T 1dce_A 123 PNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGR 202 (567)
T ss_dssp CCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCS
T ss_pred ccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccccccccc
Confidence 7799999999999999999999999999999999 999999999999999999999999999999885
Q ss_pred ---CCHHHHHHHHHHHHhhCCCChhhHHhHHHH
Q 003891 283 ---GSISLAIDAYEQCLKIDPDSRNAGQNRLLA 312 (788)
Q Consensus 283 ---g~~~eA~~~~~~al~l~p~~~~a~~~~lla 312 (788)
+.+++|++++++++.++|++..+|.++...
T Consensus 203 ~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~l 235 (567)
T 1dce_A 203 LPENVLLKELELVQNAFFTDPNDQSAWFYHRWL 235 (567)
T ss_dssp SCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHH
Confidence 568999999999999999999998875433
No 157
>2bfw_A GLGA glycogen synthase; glycosyltransferase family 5 UDP/ADP-glucose-glycogen syntha rossman folds, transferase; 1.8A {Pyrococcus abyssi} SCOP: c.87.1.8
Probab=99.43 E-value=1.8e-12 Score=127.56 Aligned_cols=155 Identities=15% Similarity=0.136 Sum_probs=125.0
Q ss_pred CCCCCCeEEEecCC---CCcCCHHHHHHHHHHH--hHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEE-cCCc
Q 003891 521 ALTNGFITFGSFNN---LAKITPKVLQVWARIL--CAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDL-LPLI 594 (788)
Q Consensus 521 ~~~~~~~~f~~~~~---~~K~~~~~~~~~~~il--~~~p~~~l~l~~~~~~~~~~~~~l~~~~~~~gi~~~rv~~-~~~~ 594 (788)
+++++. +++++++ ..|..+.++++|.++. +..|+.+|+++|.+ .+.....+++.+++.| +|.| .|.+
T Consensus 32 ~~~~~~-~i~~~G~~~~~~K~~~~li~a~~~l~~~~~~~~~~l~i~G~~--~~~~~~~l~~~~~~~~----~v~~~~g~~ 104 (200)
T 2bfw_A 32 GMDEGV-TFMFIGRFDRGQKGVDVLLKAIEILSSKKEFQEMRFIIIGKG--DPELEGWARSLEEKHG----NVKVITEML 104 (200)
T ss_dssp TCCSCE-EEEEESCBCSSSSCHHHHHHHHHHHTTSGGGGGEEEEEECCB--CHHHHHHHHHHHHHCT----TEEEECSCC
T ss_pred CCCCCC-EEEEeeccccccCCHHHHHHHHHHHHhhccCCCeEEEEECCC--ChHHHHHHHHHHHhcC----CEEEEeccC
Confidence 444443 5666665 5699999999999998 88899999999876 2236788888888887 8999 9998
Q ss_pred CCcHHHHHhcccccEeecCCCC-CCchhHHHHhhhCCceeecCCCccCccchhHHHhh-hCCcccccC--CHHHHHHHHH
Q 003891 595 LLNHDHMQAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTK-VGLKHLIAK--NEDEYVQLAL 670 (788)
Q Consensus 595 ~~~~~~~~~~~~~Dv~Ld~~~~-~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l~~-~gl~~~ia~--~~~~y~~~a~ 670 (788)
+ .++....|+.+|++|.|+.+ +.+++++|||++|+|||+ +++++ +-.. -|-..++.. |.+++++...
T Consensus 105 ~-~~~~~~~~~~ad~~l~ps~~e~~~~~~~Ea~a~G~PvI~-------~~~~~-~~e~~~~~~g~~~~~~~~~~l~~~i~ 175 (200)
T 2bfw_A 105 S-REFVRELYGSVDFVIIPSYFEPFGLVALEAMCLGAIPIA-------SAVGG-LRDIITNETGILVKAGDPGELANAIL 175 (200)
T ss_dssp C-HHHHHHHHTTCSEEEECCSCCSSCHHHHHHHHTTCEEEE-------ESCHH-HHHHCCTTTCEEECTTCHHHHHHHHH
T ss_pred C-HHHHHHHHHHCCEEEECCCCCCccHHHHHHHHCCCCEEE-------eCCCC-hHHHcCCCceEEecCCCHHHHHHHHH
Confidence 7 68899999999999999977 568999999999999998 44442 1111 255555554 9999999999
Q ss_pred HHhc-CHHHHHHHHHHHHHHhh
Q 003891 671 QLAS-DVTALANLRMSLRDLMS 691 (788)
Q Consensus 671 ~l~~-d~~~~~~~r~~~~~~~~ 691 (788)
++.+ |++.+++++++.++...
T Consensus 176 ~l~~~~~~~~~~~~~~a~~~~~ 197 (200)
T 2bfw_A 176 KALELSRSDLSKFRENCKKRAM 197 (200)
T ss_dssp HHHHCCHHHHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHHHH
Confidence 9999 99999999999887754
No 158
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.42 E-value=1.7e-12 Score=123.19 Aligned_cols=116 Identities=22% Similarity=0.219 Sum_probs=106.6
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 003891 164 WHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGV 243 (788)
Q Consensus 164 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~ 243 (788)
+.....++.+|.++...|++++|+..|+++++.+|++..++.++|.++...|++++|+.+|+++++++|++..+++++|.
T Consensus 8 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 87 (164)
T 3sz7_A 8 TPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGL 87 (164)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 34567889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 003891 244 VYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLY 279 (788)
Q Consensus 244 ~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~ 279 (788)
+|..+|++++|+.+|+++++++|++..+++..+...
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 123 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLET 123 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 999999999999999999999999988776665543
No 159
>3fro_A GLGA glycogen synthase; glycosyltransferase family, UDP/ADP-glucose-glycogen synthas rossman folds, transferase; HET: NHF; 2.50A {Pyrococcus abyssi} SCOP: c.87.1.8 PDB: 2bis_A* 3l01_A*
Probab=99.42 E-value=7.2e-13 Score=147.19 Aligned_cols=176 Identities=13% Similarity=0.101 Sum_probs=143.7
Q ss_pred CCCCCCeEEEecCCC---CcCCHHHHHHHHHHHhHc--CCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcC
Q 003891 521 ALTNGFITFGSFNNL---AKITPKVLQVWARILCAV--PNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLIL 595 (788)
Q Consensus 521 ~~~~~~~~f~~~~~~---~K~~~~~~~~~~~il~~~--p~~~l~l~~~~~~~~~~~~~l~~~~~~~gi~~~rv~~~~~~~ 595 (788)
+++++ +++++++++ .|..+.+++++.++.... |+.+|+++|.+ .......+++..++.| +.+.|.|.++
T Consensus 247 ~~~~~-~~i~~~G~~~~~~Kg~~~li~a~~~l~~~~~~~~~~l~i~G~g--~~~~~~~l~~~~~~~~---~~~~~~g~~~ 320 (439)
T 3fro_A 247 GMDEG-VTFMFIGRFDRGQKGVDVLLKAIEILSSKKEFQEMRFIIIGKG--DPELEGWARSLEEKHG---NVKVITEMLS 320 (439)
T ss_dssp TCCSC-EEEEEECCSSCTTBCHHHHHHHHHHHHTSGGGGGEEEEEECCC--CHHHHHHHHHHHHHCT---TEEEECSCCC
T ss_pred CCCCC-cEEEEEcccccccccHHHHHHHHHHHHhcccCCCeEEEEEcCC--ChhHHHHHHHHHhhcC---CEEEEcCCCC
Confidence 45666 788888875 589999999999999887 99999999976 2334488888888888 6888999877
Q ss_pred CcHHHHHhcccccEeecCCCC-CCchhHHHHhhhCCceeecCCCccCccchh-HHHhhhCCccccc--CCHHHHHHHHHH
Q 003891 596 LNHDHMQAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGV-SLLTKVGLKHLIA--KNEDEYVQLALQ 671 (788)
Q Consensus 596 ~~~~~~~~~~~~Dv~Ld~~~~-~g~~t~~eal~~GvPvvt~~g~~~~~r~~~-~~l~~~gl~~~ia--~~~~~y~~~a~~ 671 (788)
.++....|+.+|+++-|+.+ +.+++.+|||++|+|||+- ++++ .-+..-| .+++. .|++++++...+
T Consensus 321 -~~~~~~~~~~adv~v~ps~~e~~~~~~~EAma~G~Pvi~s-------~~~~~~e~~~~~-~g~~~~~~d~~~la~~i~~ 391 (439)
T 3fro_A 321 -REFVRELYGSVDFVIIPSYFEPFGLVALEAMCLGAIPIAS-------AVGGLRDIITNE-TGILVKAGDPGELANAILK 391 (439)
T ss_dssp -HHHHHHHHTTCSEEEECBSCCSSCHHHHHHHHTTCEEEEE-------SSTHHHHHCCTT-TCEEECTTCHHHHHHHHHH
T ss_pred -HHHHHHHHHHCCEEEeCCCCCCccHHHHHHHHCCCCeEEc-------CCCCcceeEEcC-ceEEeCCCCHHHHHHHHHH
Confidence 68889999999999999977 6689999999999999983 3432 1111124 44444 499999999999
Q ss_pred Hhc-CHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHH
Q 003891 672 LAS-DVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRNMWH 714 (788)
Q Consensus 672 l~~-d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~ 714 (788)
+.+ |++.+++++++.++.. +. |+++.+++++++.|+++.+
T Consensus 392 ll~~~~~~~~~~~~~~~~~~-~~--~s~~~~~~~~~~~~~~~~~ 432 (439)
T 3fro_A 392 ALELSRSDLSKFRENCKKRA-MS--FSWEKSAERYVKAYTGSID 432 (439)
T ss_dssp HHHHTTTTTHHHHHHHHHHH-HT--SCHHHHHHHHHHHHHTCSC
T ss_pred HHhcCHHHHHHHHHHHHHHH-hh--CcHHHHHHHHHHHHHHHHH
Confidence 999 9999999999999887 33 8999999999999988754
No 160
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.41 E-value=1.4e-13 Score=154.00 Aligned_cols=152 Identities=18% Similarity=0.179 Sum_probs=135.2
Q ss_pred hcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC---------------HHHHHHHHH
Q 003891 145 LEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHC---------------AEACNNLGV 209 (788)
Q Consensus 145 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---------------~~~~~~la~ 209 (788)
..+++++|+..++++++..|+....+..+|..+...|++++|+..|+++++++|.+ ..+++++|.
T Consensus 246 ~l~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~ 325 (457)
T 1kt0_A 246 TLKSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAM 325 (457)
T ss_dssp EEEEEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHH
Confidence 45677788888888888888889999999999999999999999999999999988 689999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Q 003891 210 IYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAI 289 (788)
Q Consensus 210 ~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~~eA~ 289 (788)
+|.++|++++|+.+|+++++++|++..+++++|.+|..+|++++|+..|+++++++|++..++..++.++..++++++|.
T Consensus 326 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~ 405 (457)
T 1kt0_A 326 CYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERD 405 (457)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998877
Q ss_pred H-HHHHHH
Q 003891 290 D-AYEQCL 296 (788)
Q Consensus 290 ~-~~~~al 296 (788)
. .|++++
T Consensus 406 ~~~~~~~f 413 (457)
T 1kt0_A 406 RRIYANMF 413 (457)
T ss_dssp HHHHHHC-
T ss_pred HHHHHHHH
Confidence 5 344443
No 161
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.41 E-value=2.5e-12 Score=116.66 Aligned_cols=106 Identities=24% Similarity=0.287 Sum_probs=98.4
Q ss_pred HHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------H
Q 003891 20 AECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMY-------A 92 (788)
Q Consensus 20 ~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~-------~ 92 (788)
....+.++..+|..++.+|+|++|+..|+++++++|+++.++.++|.+|..+|++++|+..++++++++|++ .
T Consensus 4 ~~d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a 83 (127)
T 4gcn_A 4 MTDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIA 83 (127)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHH
Confidence 345677899999999999999999999999999999999999999999999999999999999999987764 4
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCc
Q 003891 93 EAYCNMGVIYKNRGDLESAIACYERCLAVSPNF 125 (788)
Q Consensus 93 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 125 (788)
.++..+|.++..+|++++|+++|+++++..|+.
T Consensus 84 ~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~~ 116 (127)
T 4gcn_A 84 KAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRDP 116 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCCH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCH
Confidence 689999999999999999999999999998863
No 162
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.41 E-value=1.1e-11 Score=110.29 Aligned_cols=117 Identities=42% Similarity=0.622 Sum_probs=84.8
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 003891 167 ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYT 246 (788)
Q Consensus 167 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~ 246 (788)
...+..+|.++...|++++|++.++++++..|.+..++..+|.++...|++++|+.+++++++..|.+...+..+|.++.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 45666777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 003891 247 VQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAG 283 (788)
Q Consensus 247 ~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g 283 (788)
..|++++|+.+++++++.+|++..++..++.++...|
T Consensus 89 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 7777777777777777777777777777777665543
No 163
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.39 E-value=2.6e-12 Score=115.41 Aligned_cols=101 Identities=16% Similarity=0.155 Sum_probs=78.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 003891 203 ACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDA 282 (788)
Q Consensus 203 ~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~ 282 (788)
.++.+|..+...|++++|+..|+++++.+|++..+++.+|.++...|++++|+..|+++++++|+++.+++.+|.++...
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 98 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 45677788888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred CCHHHHHHHHHHHHhhCCCCh
Q 003891 283 GSISLAIDAYEQCLKIDPDSR 303 (788)
Q Consensus 283 g~~~eA~~~~~~al~l~p~~~ 303 (788)
|++++|+..|+++++++|++.
T Consensus 99 g~~~~A~~~~~~al~~~P~~~ 119 (121)
T 1hxi_A 99 HNANAALASLRAWLLSQPQYE 119 (121)
T ss_dssp HHHHHHHHHHHHHHC------
T ss_pred CCHHHHHHHHHHHHHhCcCCC
Confidence 888888888888888888754
No 164
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.38 E-value=2.3e-12 Score=119.50 Aligned_cols=107 Identities=11% Similarity=0.067 Sum_probs=84.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-------CHH-----HHHHHHHHHHHcCCHHHHHHHHHHHHHh-----
Q 003891 202 EACNNLGVIYKDRDNLDKAVECYQMALSIKPN-------FSQ-----SLNNLGVVYTVQGKMDAAAEMIEKAIAA----- 264 (788)
Q Consensus 202 ~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~-------~~~-----~~~~la~~~~~~g~~~eA~~~l~kal~~----- 264 (788)
..+.+.|..+...|++++|+..|+++++++|+ +.. +|.++|.++..+|++++|+..+++++++
T Consensus 12 ~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~ 91 (159)
T 2hr2_A 12 YLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRG 91 (159)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccc
Confidence 44555666666666666666666666666665 333 8888888888888888888888888888
Q ss_pred --CCCCHHHH----HHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhhHHh
Q 003891 265 --NPTYAEAY----NNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQN 308 (788)
Q Consensus 265 --~p~~~~~~----~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~a~~~ 308 (788)
+|++..+| +++|.++..+|++++|+..|+++++++|++..+...
T Consensus 92 e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~ 141 (159)
T 2hr2_A 92 ELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPG 141 (159)
T ss_dssp CTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTT
T ss_pred cCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHH
Confidence 99999999 999999999999999999999999999988766544
No 165
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.38 E-value=5.6e-12 Score=115.20 Aligned_cols=104 Identities=16% Similarity=0.162 Sum_probs=53.7
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 003891 198 PHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGV 277 (788)
Q Consensus 198 p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~ 277 (788)
+.++..+..+|.++...|++++|+.+|+++++.+|++..++..+|.++...|++++|+..++++++++|+++.+++.+|.
T Consensus 6 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 85 (137)
T 3q49_B 6 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 85 (137)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHH
Confidence 33444455555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCC
Q 003891 278 LYRDAGSISLAIDAYEQCLKIDPD 301 (788)
Q Consensus 278 ~~~~~g~~~eA~~~~~~al~l~p~ 301 (788)
++..+|++++|+..|+++++++|+
T Consensus 86 ~~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHChh
Confidence 555555555555555555555444
No 166
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.38 E-value=7e-13 Score=130.27 Aligned_cols=178 Identities=16% Similarity=0.089 Sum_probs=99.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHh
Q 003891 60 AYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDL 139 (788)
Q Consensus 60 ~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~l 139 (788)
.....+......|++++|.+.++......+.....+..+|..+...|++++|+..|++++++.|.++.....
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~-------- 77 (198)
T 2fbn_A 6 HHHHHSSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQ-------- 77 (198)
T ss_dssp ----------------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCH--------
T ss_pred cccchhhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchh--------
Confidence 344455666677788888877776666666677788888888888889999999998888887775411000
Q ss_pred hhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHH
Q 003891 140 GTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDK 219 (788)
Q Consensus 140 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~e 219 (788)
........+ ...++.++|.++...|++++|+..++++++.+|++..+++.+|.++..+|++++
T Consensus 78 ------------~~~~~~~~~-----~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~ 140 (198)
T 2fbn_A 78 ------------ILLDKKKNI-----EISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEE 140 (198)
T ss_dssp ------------HHHHHHHHH-----HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHH
T ss_pred ------------hHHHHHHHH-----HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHH
Confidence 000000000 134556666666666666666666666666666666666666666666666666
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHH-HHHHHHH
Q 003891 220 AVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAA-EMIEKAI 262 (788)
Q Consensus 220 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~-~~l~kal 262 (788)
|+.+|+++++++|++..++..++.++...++.+++. ..+.+.+
T Consensus 141 A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f 184 (198)
T 2fbn_A 141 AKENLYKAASLNPNNLDIRNSYELCVNKLKEARKKDKLTFGGMF 184 (198)
T ss_dssp HHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHC----------
T ss_pred HHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 666666666666666666666666666666666555 3344433
No 167
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.38 E-value=2.8e-11 Score=108.69 Aligned_cols=119 Identities=28% Similarity=0.378 Sum_probs=111.2
Q ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 003891 22 CLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVI 101 (788)
Q Consensus 22 ~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~ 101 (788)
..+..+..+|..+...|++++|+..|+++++.+|++..++..+|.++...|++++|+.+++++++.+|.+..++..+|.+
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 89 (131)
T 2vyi_A 10 AEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLA 89 (131)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHH
Confidence 44567889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhh
Q 003891 102 YKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLG 140 (788)
Q Consensus 102 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg 140 (788)
+...|++++|+.+++++++..|++...+..++.++..++
T Consensus 90 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~ 128 (131)
T 2vyi_A 90 LSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLR 128 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHT
T ss_pred HHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHh
Confidence 999999999999999999999999887777777766654
No 168
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.36 E-value=1.1e-11 Score=112.19 Aligned_cols=116 Identities=20% Similarity=0.364 Sum_probs=108.3
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 003891 24 AIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYK 103 (788)
Q Consensus 24 a~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~ 103 (788)
...++.+|..+...|++++|+..|+++++.+|++..+++.+|.++...|++++|+.+++++++.+|.+..++..+|.++.
T Consensus 16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~ 95 (133)
T 2lni_A 16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALE 95 (133)
T ss_dssp HHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 44588899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHh
Q 003891 104 NRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDL 139 (788)
Q Consensus 104 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~l 139 (788)
..|++++|+.+|+++++.+|++...+..++.++...
T Consensus 96 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 131 (133)
T 2lni_A 96 AMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQ 131 (133)
T ss_dssp HTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHh
Confidence 999999999999999999999887777777666554
No 169
>2f9f_A First mannosyl transferase (WBAZ-1); alpha-beta protein, structural genomics, PSI, protein struct initiative; 1.80A {Archaeoglobus fulgidus} SCOP: c.87.1.8
Probab=99.36 E-value=6.6e-13 Score=128.14 Aligned_cols=150 Identities=13% Similarity=0.013 Sum_probs=112.5
Q ss_pred CCCCCCCCeEEEecCCC--CcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHH--HcCCCCCcEEEcCCc
Q 003891 519 TPALTNGFITFGSFNNL--AKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLE--QLGLESLRVDLLPLI 594 (788)
Q Consensus 519 ~~~~~~~~~~f~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~~~~l~~~~~--~~gi~~~rv~~~~~~ 594 (788)
...++++..+|++++++ .|..+.++++|.++ |+.+|+++|.+.. ...+++.++ ..|+. ++|.|.|.+
T Consensus 16 ~~~~~~~~~~i~~~G~~~~~Kg~~~li~a~~~l----~~~~l~i~G~~~~----~~~l~~~~~~~~~~l~-~~v~~~g~~ 86 (177)
T 2f9f_A 16 KFKFKCYGDFWLSVNRIYPEKRIELQLEVFKKL----QDEKLYIVGWFSK----GDHAERYARKIMKIAP-DNVKFLGSV 86 (177)
T ss_dssp TCCCCCCCSCEEEECCSSGGGTHHHHHHHHHHC----TTSCEEEEBCCCT----TSTHHHHHHHHHHHSC-TTEEEEESC
T ss_pred ccccCCCCCEEEEEeccccccCHHHHHHHHHhC----CCcEEEEEecCcc----HHHHHHHHHhhhcccC-CcEEEeCCC
Confidence 34556666778888876 78888888887765 8999999997632 245666666 77887 899999998
Q ss_pred CCcHHHHHhcccccEeecCCCC-CCchhHHHHhhhCCceeecCCCccCccchh--HHHhhhCCcccc-cCCHHHHHHHHH
Q 003891 595 LLNHDHMQAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGV--SLLTKVGLKHLI-AKNEDEYVQLAL 670 (788)
Q Consensus 595 ~~~~~~~~~~~~~Dv~Ld~~~~-~g~~t~~eal~~GvPvvt~~g~~~~~r~~~--~~l~~~gl~~~i-a~~~~~y~~~a~ 670 (788)
+ .++....|+.+|+++-|+.+ +.+.+.+|||++|+|||+. +.++ .++. -|-..++ ..|.+++++...
T Consensus 87 ~-~~e~~~~~~~adi~v~ps~~e~~~~~~~Eama~G~PvI~~-------~~~~~~e~i~-~~~~g~~~~~d~~~l~~~i~ 157 (177)
T 2f9f_A 87 S-EEELIDLYSRCKGLLCTAKDEDFGLTPIEAMASGKPVIAV-------NEGGFKETVI-NEKTGYLVNADVNEIIDAMK 157 (177)
T ss_dssp C-HHHHHHHHHHCSEEEECCSSCCSCHHHHHHHHTTCCEEEE-------SSHHHHHHCC-BTTTEEEECSCHHHHHHHHH
T ss_pred C-HHHHHHHHHhCCEEEeCCCcCCCChHHHHHHHcCCcEEEe-------CCCCHHHHhc-CCCccEEeCCCHHHHHHHHH
Confidence 8 67889999999999997755 7788999999999999983 3331 1111 1333444 589999999999
Q ss_pred HHhcCHHH-HHHHHHHH
Q 003891 671 QLASDVTA-LANLRMSL 686 (788)
Q Consensus 671 ~l~~d~~~-~~~~r~~~ 686 (788)
++.+|++. ++++|+..
T Consensus 158 ~l~~~~~~~~~~~~~~a 174 (177)
T 2f9f_A 158 KVSKNPDKFKKDCFRRA 174 (177)
T ss_dssp HHHHCTTTTHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHH
Confidence 99999875 44444443
No 170
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.36 E-value=3.4e-12 Score=118.33 Aligned_cols=106 Identities=13% Similarity=0.101 Sum_probs=99.3
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-------CHH-----HHHHHHHHHHHcCCHHHHHHHHHHHHHh---
Q 003891 23 LAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPH-------YAP-----AYYNLGVVYSELMQYDTALGCYEKAALE--- 87 (788)
Q Consensus 23 la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~-------~~~-----~~~~lg~~~~~~g~~~~A~~~~~kal~~--- 87 (788)
.+..+..+|..++..|+|++|+..|+++++++|+ +.. +|.++|.++..+|+|++|+..|++++++
T Consensus 10 ~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~ 89 (159)
T 2hr2_A 10 GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNR 89 (159)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhc
Confidence 4667889999999999999999999999999999 544 9999999999999999999999999999
Q ss_pred ----CCCCHHHH----HHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHH
Q 003891 88 ----RPMYAEAY----CNMGVIYKNRGDLESAIACYERCLAVSPNFEIA 128 (788)
Q Consensus 88 ----~p~~~~~~----~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 128 (788)
+|++..+| +++|.++..+|++++|+..|+++++++|++...
T Consensus 90 ~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~ 138 (159)
T 2hr2_A 90 RGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGE 138 (159)
T ss_dssp HCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSC
T ss_pred cccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHH
Confidence 99999999 999999999999999999999999999887533
No 171
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.36 E-value=1.1e-11 Score=117.28 Aligned_cols=118 Identities=17% Similarity=0.148 Sum_probs=106.8
Q ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHh------------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 003891 22 CLAIVLTDLGTSLKLAGNTQDGIQKYYEALKI------------------DPHYAPAYYNLGVVYSELMQYDTALGCYEK 83 (788)
Q Consensus 22 ~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~------------------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~k 83 (788)
..+..+..+|..++..|++++|+..|.++++. +|.+..+++++|.+|..+|++++|+..+++
T Consensus 9 ~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~ 88 (162)
T 3rkv_A 9 KSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSE 88 (162)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 45677999999999999999999999999999 777789999999999999999999999999
Q ss_pred HHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcH-HHHHHHHHHHHHh
Q 003891 84 AALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFE-IAKNNMAIALTDL 139 (788)
Q Consensus 84 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~la~~l~~l 139 (788)
+++++|.++.+++.+|.+|..+|++++|+..|+++++++|++. .....+..+...+
T Consensus 89 al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~ 145 (162)
T 3rkv_A 89 VLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTERR 145 (162)
T ss_dssp HHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHH
T ss_pred HHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999988 4455555444443
No 172
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.36 E-value=7e-12 Score=122.80 Aligned_cols=157 Identities=19% Similarity=0.180 Sum_probs=130.6
Q ss_pred hcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc------CCCCHHHHHHHHHHHHHcCCHH
Q 003891 145 LEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHF------NPHCAEACNNLGVIYKDRDNLD 218 (788)
Q Consensus 145 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~la~~~~~~g~~~ 218 (788)
..|++++|.+.++......+....++..+|.++...|++++|+..+++++.. .+....++.++|.++...|+++
T Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 83 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD 83 (203)
T ss_dssp ---CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred ccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 4689999999666554433366789999999999999999999999999984 3445778999999999999999
Q ss_pred HHHHHHHHHHhh---CCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CC----HHHHHHHHHHHHHcCCH
Q 003891 219 KAVECYQMALSI---KPNF----SQSLNNLGVVYTVQGKMDAAAEMIEKAIAANP--TY----AEAYNNLGVLYRDAGSI 285 (788)
Q Consensus 219 eA~~~~~~al~~---~p~~----~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p--~~----~~~~~~la~~~~~~g~~ 285 (788)
+|+.+++++++. .+++ ..++.++|.++...|++++|+.++++++...+ .+ ..++..+|.++...|++
T Consensus 84 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 163 (203)
T 3gw4_A 84 AARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNL 163 (203)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCH
Confidence 999999999988 4433 45789999999999999999999999997632 22 34578999999999999
Q ss_pred HHHHHHHHHHHhhCCC
Q 003891 286 SLAIDAYEQCLKIDPD 301 (788)
Q Consensus 286 ~eA~~~~~~al~l~p~ 301 (788)
++|.+++++++++...
T Consensus 164 ~~A~~~~~~al~~~~~ 179 (203)
T 3gw4_A 164 LEAQQHWLRARDIFAE 179 (203)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999987443
No 173
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.36 E-value=1.2e-11 Score=112.99 Aligned_cols=124 Identities=16% Similarity=0.077 Sum_probs=112.5
Q ss_pred HhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHH
Q 003891 161 YYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNN 240 (788)
Q Consensus 161 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~ 240 (788)
..++.++..+..+|.++...|++++|+..|++++..+|++..++.++|.++...|++++|+.+++++++.+|++..++..
T Consensus 3 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 82 (137)
T 3q49_B 3 HMKSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFF 82 (137)
T ss_dssp ---CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CCccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHH
Confidence 35678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCC-----CHHHHHHHHHHHHHcCC
Q 003891 241 LGVVYTVQGKMDAAAEMIEKAIAANPT-----YAEAYNNLGVLYRDAGS 284 (788)
Q Consensus 241 la~~~~~~g~~~eA~~~l~kal~~~p~-----~~~~~~~la~~~~~~g~ 284 (788)
+|.++...|++++|+..|+++++++|+ +..+...+..+..+...
T Consensus 83 l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~~~~~~ 131 (137)
T 3q49_B 83 LGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRWN 131 (137)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999887 66677777766555443
No 174
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.36 E-value=5e-12 Score=113.55 Aligned_cols=100 Identities=18% Similarity=0.223 Sum_probs=92.2
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC
Q 003891 27 LTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRG 106 (788)
Q Consensus 27 l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g 106 (788)
++.+|..+...|++++|+..|+++++.+|++..+|+.+|.++...|++++|+..|+++++++|++..++..+|.++...|
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g 99 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEH 99 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 67789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhhCCCcH
Q 003891 107 DLESAIACYERCLAVSPNFE 126 (788)
Q Consensus 107 ~~~~A~~~~~~al~~~p~~~ 126 (788)
++++|+..|+++++++|++.
T Consensus 100 ~~~~A~~~~~~al~~~P~~~ 119 (121)
T 1hxi_A 100 NANAALASLRAWLLSQPQYE 119 (121)
T ss_dssp HHHHHHHHHHHHHC------
T ss_pred CHHHHHHHHHHHHHhCcCCC
Confidence 99999999999999999764
No 175
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.35 E-value=5.8e-11 Score=122.99 Aligned_cols=221 Identities=11% Similarity=-0.008 Sum_probs=164.2
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC
Q 003891 27 LTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRG 106 (788)
Q Consensus 27 l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g 106 (788)
.+.+.+++...|++.... ..+....+...++..+. ++ |+..+++.++..+.....+..+|.++...|
T Consensus 48 ~~~~~Rs~iAlg~~~~~~--------~~~~~~~a~~~la~~~~--~~---a~~~l~~l~~~~~~~~~~~~~la~i~~~~g 114 (310)
T 3mv2_B 48 LFYKAKTLLALGQYQSQD--------PTSKLGKVLDLYVQFLD--TK---NIEELENLLKDKQNSPYELYLLATAQAILG 114 (310)
T ss_dssp HHHHHHHHHHTTCCCCCC--------SSSTTHHHHHHHHHHHT--TT---CCHHHHHTTTTSCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCCccCC--------CCCHHHHHHHHHHHHhc--cc---HHHHHHHHHhcCCCCcHHHHHHHHHHHHcC
Confidence 444556677778776421 12222334444444432 22 888898888776666777789999999999
Q ss_pred CHHHHHHHHHHHHhhCC--CcHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHhCCC----CHHHHHHH--HHHHH
Q 003891 107 DLESAIACYERCLAVSP--NFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWH----YADAMYNL--GVAYG 178 (788)
Q Consensus 107 ~~~~A~~~~~~al~~~p--~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~l--a~~~~ 178 (788)
++++|++.+.+.+..+| .+.+.. ..+..++..+|+.+.|.+.++++.+.+|+ +......+ +++..
T Consensus 115 ~~eeAL~~l~~~i~~~~~~~~lea~-------~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~~~~~d~~l~~Laea~v~l 187 (310)
T 3mv2_B 115 DLDKSLETCVEGIDNDEAEGTTELL-------LLAIEVALLNNNVSTASTIFDNYTNAIEDTVSGDNEMILNLAESYIKF 187 (310)
T ss_dssp CHHHHHHHHHHHHTSSCSTTHHHHH-------HHHHHHHHHTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhccCCCcCcHHHH-------HHHHHHHHHCCCHHHHHHHHHHHHhcCccccccchHHHHHHHHHHHHH
Confidence 99999999999998887 444443 34445555577999999999999998883 22333343 54466
Q ss_pred HcC--ChHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh----------CCCCHHHHHHHHHH
Q 003891 179 EML--KFDMAIVFYELAFHFNPH--CAEACNNLGVIYKDRDNLDKAVECYQMALSI----------KPNFSQSLNNLGVV 244 (788)
Q Consensus 179 ~~g--~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~eA~~~~~~al~~----------~p~~~~~~~~la~~ 244 (788)
..| ++++|...|+++.+..|+ ....+++ ++..+|++++|.+.++++++. +|+++.++.+++.+
T Consensus 188 ~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln---~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l 264 (310)
T 3mv2_B 188 ATNKETATSNFYYYEELSQTFPTWKTQLGLLN---LHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITL 264 (310)
T ss_dssp HHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHH---HHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHH
T ss_pred HhCCccHHHHHHHHHHHHHhCCCcccHHHHHH---HHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHH
Confidence 666 999999999999888886 2334444 899999999999999988776 48899999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 003891 245 YTVQGKMDAAAEMIEKAIAANPTYAEAY 272 (788)
Q Consensus 245 ~~~~g~~~eA~~~l~kal~~~p~~~~~~ 272 (788)
...+|+ +|.++++++.+.+|+++.+.
T Consensus 265 ~~~lgk--~a~~l~~qL~~~~P~hp~i~ 290 (310)
T 3mv2_B 265 ALMQGL--DTEDLTNQLVKLDHEHAFIK 290 (310)
T ss_dssp HHHTTC--TTHHHHHHHHHTTCCCHHHH
T ss_pred HHHhCh--HHHHHHHHHHHhCCCChHHH
Confidence 999998 89999999999999998654
No 176
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.35 E-value=2.1e-11 Score=107.38 Aligned_cols=104 Identities=20% Similarity=0.298 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 003891 203 ACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDA 282 (788)
Q Consensus 203 ~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~ 282 (788)
.+..+|.++...|++++|+.+|++++...|.+..++..+|.++...|++++|+..++++++..|+++.++..+|.++...
T Consensus 6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 85 (118)
T 1elw_A 6 ELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFL 85 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444444444444444444444444444444444444444444444444444
Q ss_pred CCHHHHHHHHHHHHhhCCCChhhH
Q 003891 283 GSISLAIDAYEQCLKIDPDSRNAG 306 (788)
Q Consensus 283 g~~~eA~~~~~~al~l~p~~~~a~ 306 (788)
|++++|.++|+++++++|++..++
T Consensus 86 ~~~~~A~~~~~~~~~~~~~~~~~~ 109 (118)
T 1elw_A 86 NRFEEAKRTYEEGLKHEANNPQLK 109 (118)
T ss_dssp TCHHHHHHHHHHHHTTCTTCHHHH
T ss_pred hhHHHHHHHHHHHHHcCCCCHHHH
Confidence 444444444444444444444433
No 177
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.34 E-value=7.1e-12 Score=118.68 Aligned_cols=112 Identities=17% Similarity=0.131 Sum_probs=61.8
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhc------------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 003891 169 AMYNLGVAYGEMLKFDMAIVFYELAFHF------------------NPHCAEACNNLGVIYKDRDNLDKAVECYQMALSI 230 (788)
Q Consensus 169 ~~~~la~~~~~~g~~~~A~~~~~~al~~------------------~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~ 230 (788)
.+..+|..++..|++++|+..|++++.. +|....++.++|.++..+|++++|+..+++++++
T Consensus 13 ~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~ 92 (162)
T 3rkv_A 13 ALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKR 92 (162)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc
Confidence 4455556666666666666666666555 3344455555555555555555555555555555
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHH
Q 003891 231 KPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYA-EAYNNLGVLYR 280 (788)
Q Consensus 231 ~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~-~~~~~la~~~~ 280 (788)
+|+++.+++.+|.+|..+|++++|+..|+++++++|++. .+...++.+..
T Consensus 93 ~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~ 143 (162)
T 3rkv_A 93 EETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTE 143 (162)
T ss_dssp STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH
T ss_pred CCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 555555555555555555555555555555555555554 33444444433
No 178
>2qzs_A Glycogen synthase; glycosyl-transferase, GT-B fold, rossmann fold, closed-form, ADP and glucose binding, glycogen biosynthesis; HET: GLC ADP 250; 2.20A {Escherichia coli} PDB: 2r4t_A* 2r4u_A* 3guh_A* 3cx4_A* 3cop_A* 3d1j_A
Probab=99.34 E-value=9.7e-12 Score=140.35 Aligned_cols=170 Identities=12% Similarity=0.001 Sum_probs=132.9
Q ss_pred CCeEEEecCCC--CcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEE-EcCCcCCcHHHH
Q 003891 525 GFITFGSFNNL--AKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVD-LLPLILLNHDHM 601 (788)
Q Consensus 525 ~~~~f~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~~~~l~~~~~~~gi~~~rv~-~~~~~~~~~~~~ 601 (788)
+.+++++++++ .|..+.++++|.++.+ ++.+|+|+|.+ .+..++.+++..+++| ++|+ |.|. + .++..
T Consensus 291 ~~~~i~~vGrl~~~Kg~~~li~a~~~l~~--~~~~l~ivG~g--~~~~~~~l~~~~~~~~---~~v~~~~g~-~-~~~~~ 361 (485)
T 2qzs_A 291 KVPLFAVVSRLTSQKGLDLVLEALPGLLE--QGGQLALLGAG--DPVLQEGFLAAAAEYP---GQVGVQIGY-H-EAFSH 361 (485)
T ss_dssp TSCEEEEEEEESGGGCHHHHHHHHHHHHH--TTCEEEEEEEE--CHHHHHHHHHHHHHST---TTEEEEESC-C-HHHHH
T ss_pred CCeEEEEeccCccccCHHHHHHHHHHHhh--CCcEEEEEeCC--chHHHHHHHHHHHhCC---CcEEEeCCC-C-HHHHH
Confidence 56778888865 8999999999999876 58999999876 2346788888888875 6886 7777 3 45557
Q ss_pred HhcccccEeecCCCC-CCchhHHHHhhhCCceeecCCCccCccchh-HHHhhhC---------Cccccc--CCHHHHHHH
Q 003891 602 QAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGV-SLLTKVG---------LKHLIA--KNEDEYVQL 668 (788)
Q Consensus 602 ~~~~~~Dv~Ld~~~~-~g~~t~~eal~~GvPvvt~~g~~~~~r~~~-~~l~~~g---------l~~~ia--~~~~~y~~~ 668 (788)
..|+.+|+++-|+.+ +.|.+.+|||++|+|||+ +++++ .=+..-| ..+++. .|.+++++.
T Consensus 362 ~~~~~adv~v~pS~~E~~g~~~lEAma~G~PvI~-------s~~gg~~e~v~~~~~~~~~~~~~~G~l~~~~d~~~la~~ 434 (485)
T 2qzs_A 362 RIMGGADVILVPSRFEPCGLTQLYGLKYGTLPLV-------RRTGGLADTVSDCSLENLADGVASGFVFEDSNAWSLLRA 434 (485)
T ss_dssp HHHHHCSEEEECCSCCSSCSHHHHHHHHTCEEEE-------ESSHHHHHHCCBCCHHHHHTTCCCBEEECSSSHHHHHHH
T ss_pred HHHHhCCEEEECCccCCCcHHHHHHHHCCCCEEE-------CCCCCccceeccCccccccccccceEEECCCCHHHHHHH
Confidence 889999999999977 779999999999999998 44432 1111112 345554 389999999
Q ss_pred HHHHh---cCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHH
Q 003891 669 ALQLA---SDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRNMWHR 715 (788)
Q Consensus 669 a~~l~---~d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~ 715 (788)
..++. .|++.+++++++.++ ..|+++.+++++++.|+++...
T Consensus 435 i~~ll~~~~~~~~~~~~~~~~~~-----~~fs~~~~~~~~~~ly~~~~~~ 479 (485)
T 2qzs_A 435 IRRAFVLWSRPSLWRFVQRQAMA-----MDFSWQVAAKSYRELYYRLKLE 479 (485)
T ss_dssp HHHHHHHHTSHHHHHHHHHHHHH-----CCCCHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHcCCHHHHHHHHHHHHh-----hcCCHHHHHHHHHHHHHHhhhh
Confidence 99998 799999999887763 4599999999999999988654
No 179
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.34 E-value=4.1e-12 Score=124.52 Aligned_cols=159 Identities=18% Similarity=0.153 Sum_probs=113.1
Q ss_pred HHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHCCCH
Q 003891 35 KLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALE------RPMYAEAYCNMGVIYKNRGDL 108 (788)
Q Consensus 35 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~------~p~~~~~~~~la~~~~~~g~~ 108 (788)
+..|++++|++.++......+....++..+|.++...|++++|+.+++++++. .+....++..+|.++...|++
T Consensus 3 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW 82 (203)
T ss_dssp ----CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred cccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 46799999999665554433367889999999999999999999999999983 344577899999999999999
Q ss_pred HHHHHHHHHHHhh---CCCcHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHhCCC--C----HHHHHHHHHHHHH
Q 003891 109 ESAIACYERCLAV---SPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWH--Y----ADAMYNLGVAYGE 179 (788)
Q Consensus 109 ~~A~~~~~~al~~---~p~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~--~----~~~~~~la~~~~~ 179 (788)
++|+.++++++++ .+++. ...+.++..+|.++...|++++|+.+++++++..+. + ..++..+|.++..
T Consensus 83 ~~A~~~~~~al~~~~~~~~~~---~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~ 159 (203)
T 3gw4_A 83 DAARRCFLEERELLASLPEDP---LAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQ 159 (203)
T ss_dssp HHHHHHHHHHHHHHHHSCCCH---HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCccH---HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHH
Confidence 9999999999988 33222 123556667777777777888888888877754221 1 1234455555555
Q ss_pred cCChHHHHHHHHHHHhc
Q 003891 180 MLKFDMAIVFYELAFHF 196 (788)
Q Consensus 180 ~g~~~~A~~~~~~al~~ 196 (788)
.|++++|+..+++++++
T Consensus 160 ~g~~~~A~~~~~~al~~ 176 (203)
T 3gw4_A 160 EKNLLEAQQHWLRARDI 176 (203)
T ss_dssp TTCHHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHH
Confidence 55555555555555543
No 180
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.34 E-value=4.6e-11 Score=105.13 Aligned_cols=112 Identities=25% Similarity=0.296 Sum_probs=105.1
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 003891 24 AIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYK 103 (788)
Q Consensus 24 a~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~ 103 (788)
+..++.+|..+...|++++|+..|+++++.+|.+..++..+|.++...|++++|+..++++++.+|.+..++..+|.++.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 83 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 45688899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Q 003891 104 NRGDLESAIACYERCLAVSPNFEIAKNNMAIA 135 (788)
Q Consensus 104 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 135 (788)
..|++++|+..++++++.+|++...+..++.+
T Consensus 84 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 115 (118)
T 1elw_A 84 FLNRFEEAKRTYEEGLKHEANNPQLKEGLQNM 115 (118)
T ss_dssp HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence 99999999999999999999998776655543
No 181
>2iw1_A Lipopolysaccharide core biosynthesis protein RFAG; transferase, lipopolysaccharide biosynthesis, family GT-4, glycosyltransferase, LPS; HET: U2F; 1.5A {Escherichia coli} SCOP: c.87.1.8 PDB: 2iv7_A*
Probab=99.33 E-value=3.1e-12 Score=138.98 Aligned_cols=174 Identities=13% Similarity=0.077 Sum_probs=135.5
Q ss_pred CCCCCCCeEEEecCCC--CcCCHHHHHHHHHHHhH-cCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCC
Q 003891 520 PALTNGFITFGSFNNL--AKITPKVLQVWARILCA-VPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILL 596 (788)
Q Consensus 520 ~~~~~~~~~f~~~~~~--~K~~~~~~~~~~~il~~-~p~~~l~l~~~~~~~~~~~~~l~~~~~~~gi~~~rv~~~~~~~~ 596 (788)
.+++++.+++++++++ .|..+.+++++.++... .|+.+|+++|.+. .+.+++.++++|+. ++|.|.|.
T Consensus 190 ~~~~~~~~~i~~~G~~~~~K~~~~li~a~~~l~~~~~~~~~l~i~G~g~-----~~~~~~~~~~~~~~-~~v~~~g~--- 260 (374)
T 2iw1_A 190 NGIKEQQNLLLQVGSDFGRKGVDRSIEALASLPESLRHNTLLFVVGQDK-----PRKFEALAEKLGVR-SNVHFFSG--- 260 (374)
T ss_dssp TTCCTTCEEEEEECSCTTTTTHHHHHHHHHTSCHHHHHTEEEEEESSSC-----CHHHHHHHHHHTCG-GGEEEESC---
T ss_pred hCCCCCCeEEEEeccchhhcCHHHHHHHHHHhHhccCCceEEEEEcCCC-----HHHHHHHHHHcCCC-CcEEECCC---
Confidence 3456677888888876 78999999999988777 5899999999862 25677888889997 89999997
Q ss_pred cHHHHHhcccccEeecCCCC-CCchhHHHHhhhCCceeecCCCccCccchhHHHhhhCCcccccC---CHHHHHHHHHHH
Q 003891 597 NHDHMQAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIAK---NEDEYVQLALQL 672 (788)
Q Consensus 597 ~~~~~~~~~~~Dv~Ld~~~~-~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l~~~gl~~~ia~---~~~~y~~~a~~l 672 (788)
.++....|+.+|+++-|+.+ +.|++++|||++|+|||+....... .++.. |-.+++.. |.+++++...++
T Consensus 261 ~~~~~~~~~~ad~~v~ps~~e~~~~~~~Ea~a~G~Pvi~~~~~~~~-----e~i~~-~~~g~~~~~~~~~~~l~~~i~~l 334 (374)
T 2iw1_A 261 RNDVSELMAAADLLLHPAYQEAAGIVLLEAITAGLPVLTTAVCGYA-----HYIAD-ANCGTVIAEPFSQEQLNEVLRKA 334 (374)
T ss_dssp CSCHHHHHHHCSEEEECCSCCSSCHHHHHHHHHTCCEEEETTSTTT-----HHHHH-HTCEEEECSSCCHHHHHHHHHHH
T ss_pred cccHHHHHHhcCEEEeccccCCcccHHHHHHHCCCCEEEecCCCch-----hhhcc-CCceEEeCCCCCHHHHHHHHHHH
Confidence 35678888889999999976 7799999999999999985432221 22322 33344443 899999999999
Q ss_pred hcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHH
Q 003891 673 ASDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRN 711 (788)
Q Consensus 673 ~~d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~~ 711 (788)
.+|++.+++++++.++...+ +++..+++.+++.++.
T Consensus 335 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~ 370 (374)
T 2iw1_A 335 LTQSPLRMAWAENARHYADT---QDLYSLPEKAADIITG 370 (374)
T ss_dssp HHCHHHHHHHHHHHHHHHHH---SCCSCHHHHHHHHHHC
T ss_pred HcChHHHHHHHHHHHHHHHH---hhHHHHHHHHHHHHHH
Confidence 99999999999999988764 3556667777666653
No 182
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.33 E-value=1.2e-12 Score=146.54 Aligned_cols=145 Identities=16% Similarity=0.122 Sum_probs=101.1
Q ss_pred cCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHH
Q 003891 37 AGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMY---------------AEAYCNMGVI 101 (788)
Q Consensus 37 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~---------------~~~~~~la~~ 101 (788)
.+++++|+..|+++++..|..+..+..+|..++..|+|++|+..|+++++++|.+ ..++.++|.+
T Consensus 247 l~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~ 326 (457)
T 1kt0_A 247 LKSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMC 326 (457)
T ss_dssp EEEEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHH
Confidence 3566778888888888888888888899999999999999999999998888887 5677777777
Q ss_pred HHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 003891 102 YKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEML 181 (788)
Q Consensus 102 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 181 (788)
|..+|++++|+.+|+++++++|++..++++++.++ ...|++++|+..|+++++++|++..++..++.++...+
T Consensus 327 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~-------~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~ 399 (457)
T 1kt0_A 327 YLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQ-------LLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAK 399 (457)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHH-------HHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHH-------HHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence 77777777777777777777776654444333333 33446666666666666666666666666666666666
Q ss_pred ChHHHHH
Q 003891 182 KFDMAIV 188 (788)
Q Consensus 182 ~~~~A~~ 188 (788)
++++|..
T Consensus 400 ~~~~a~~ 406 (457)
T 1kt0_A 400 EHNERDR 406 (457)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6665543
No 183
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.32 E-value=3e-11 Score=111.55 Aligned_cols=109 Identities=16% Similarity=0.165 Sum_probs=53.0
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 003891 198 PHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNF---SQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNN 274 (788)
Q Consensus 198 p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~ 274 (788)
|.....++.+|..+...|++++|+.+|+++++..|++ ..++..+|.++...|++++|+..++++++.+|++..+++.
T Consensus 25 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 104 (148)
T 2dba_A 25 ASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYR 104 (148)
T ss_dssp CCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHH
Confidence 3344444444444444444444444444444444443 4444444555555555555555555555555544445555
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCChhhH
Q 003891 275 LGVLYRDAGSISLAIDAYEQCLKIDPDSRNAG 306 (788)
Q Consensus 275 la~~~~~~g~~~eA~~~~~~al~l~p~~~~a~ 306 (788)
+|.++..+|++++|+.+|+++++++|++..++
T Consensus 105 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 136 (148)
T 2dba_A 105 RSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQ 136 (148)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHH
Confidence 55555555555555555555555555444443
No 184
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.32 E-value=7.3e-11 Score=104.92 Aligned_cols=115 Identities=37% Similarity=0.573 Sum_probs=107.2
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 003891 24 AIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYK 103 (788)
Q Consensus 24 a~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~ 103 (788)
+..++.+|..+...|++++|+..|+++++..|.+..++..+|.++...|++++|+.+++++++..|.+..++..+|.++.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 34578889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH
Q 003891 104 NRGDLESAIACYERCLAVSPNFEIAKNNMAIALTD 138 (788)
Q Consensus 104 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~ 138 (788)
..|++++|+.+++++++..|++...+..++.++..
T Consensus 89 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 123 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQK 123 (125)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh
Confidence 99999999999999999999998877777666544
No 185
>1rzu_A Glycogen synthase 1; glycosyl-transferase, GT-B fold, rossmann fold, ADP-binding, transferase; HET: ADP; 2.30A {Agrobacterium tumefaciens} SCOP: c.87.1.8 PDB: 1rzv_A
Probab=99.32 E-value=1.3e-11 Score=139.21 Aligned_cols=168 Identities=13% Similarity=-0.031 Sum_probs=131.7
Q ss_pred CeEEEecCCC--CcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEE-EcCCcCCcHHHHH
Q 003891 526 FITFGSFNNL--AKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVD-LLPLILLNHDHMQ 602 (788)
Q Consensus 526 ~~~f~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~~~~l~~~~~~~gi~~~rv~-~~~~~~~~~~~~~ 602 (788)
.+++++++++ .|..+.++++|.++.+ ++.+|+++|.+ .+..++.+++..+++| ++|+ |.|. + .++...
T Consensus 291 ~~~i~~vGrl~~~Kg~~~li~a~~~l~~--~~~~l~ivG~g--~~~~~~~l~~~~~~~~---~~v~~~~g~-~-~~~~~~ 361 (485)
T 1rzu_A 291 SPLFCVISRLTWQKGIDLMAEAVDEIVS--LGGRLVVLGAG--DVALEGALLAAASRHH---GRVGVAIGY-N-EPLSHL 361 (485)
T ss_dssp SCEEEEESCBSTTTTHHHHHTTHHHHHH--TTCEEEEEECB--CHHHHHHHHHHHHHTT---TTEEEEESC-C-HHHHHH
T ss_pred CeEEEEEccCccccCHHHHHHHHHHHHh--cCceEEEEeCC--chHHHHHHHHHHHhCC---CcEEEecCC-C-HHHHHH
Confidence 5578888876 8999999999999876 58999999976 2346788888888875 6887 7777 3 455568
Q ss_pred hcccccEeecCCCC-CCchhHHHHhhhCCceeecCCCccCccchh-HHHhhhC---------Cccccc--CCHHHHHHHH
Q 003891 603 AYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGV-SLLTKVG---------LKHLIA--KNEDEYVQLA 669 (788)
Q Consensus 603 ~~~~~Dv~Ld~~~~-~g~~t~~eal~~GvPvvt~~g~~~~~r~~~-~~l~~~g---------l~~~ia--~~~~~y~~~a 669 (788)
.|+.+|+++-|+.+ +.|.+.+|||++|+|||+ +++++ .=+..-| ..+++. .|.+++++..
T Consensus 362 ~~~~adv~v~pS~~E~~~~~~lEAma~G~PvI~-------s~~gg~~e~v~~~~~~~~~~~~~~G~l~~~~d~~~la~~i 434 (485)
T 1rzu_A 362 MQAGCDAIIIPSRFEPCGLTQLYALRYGCIPVV-------ARTGGLADTVIDANHAALASKAATGVQFSPVTLDGLKQAI 434 (485)
T ss_dssp HHHHCSEEEECCSCCSSCSHHHHHHHHTCEEEE-------ESSHHHHHHCCBCCHHHHHTTCCCBEEESSCSHHHHHHHH
T ss_pred HHhcCCEEEECcccCCCCHHHHHHHHCCCCEEE-------eCCCChhheecccccccccccCCcceEeCCCCHHHHHHHH
Confidence 89999999999977 779999999999999998 44432 1111112 344443 3899999999
Q ss_pred HHHh---cCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHH
Q 003891 670 LQLA---SDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRNMWH 714 (788)
Q Consensus 670 ~~l~---~d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~ 714 (788)
.++. +|++.+++++++.++ ..|+++.+++++++.|+++..
T Consensus 435 ~~ll~~~~~~~~~~~~~~~~~~-----~~fs~~~~~~~~~~~y~~~~~ 477 (485)
T 1rzu_A 435 RRTVRYYHDPKLWTQMQKLGMK-----SDVSWEKSAGLYAALYSQLIS 477 (485)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHT-----CCCBHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHhCCHHHHHHHHHHHHH-----HhCChHHHHHHHHHHHHHhhC
Confidence 9998 899999998887752 459999999999999987643
No 186
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=99.32 E-value=3.7e-13 Score=151.32 Aligned_cols=137 Identities=18% Similarity=0.201 Sum_probs=102.8
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Q 003891 169 AMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQ 248 (788)
Q Consensus 169 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~ 248 (788)
.+..+|..+...|++++|++.|+++++.+|++..++.++|.++..+|++++|+.+|+++++++|+++.+++++|.+|..+
T Consensus 8 ~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~ 87 (477)
T 1wao_1 8 ELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMAL 87 (477)
T ss_dssp TSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 34455666677777777777777777777777777788888888888888888888888888888888888888888888
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHH--HHHcCCHHHHHHHHH-----------HHHhhCCCChhh
Q 003891 249 GKMDAAAEMIEKAIAANPTYAEAYNNLGVL--YRDAGSISLAIDAYE-----------QCLKIDPDSRNA 305 (788)
Q Consensus 249 g~~~eA~~~l~kal~~~p~~~~~~~~la~~--~~~~g~~~eA~~~~~-----------~al~l~p~~~~a 305 (788)
|++++|++.|+++++++|++..++..++.+ +..+|++++|++.++ ++++++|+...+
T Consensus 88 g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~al~~~~~~~~~ 157 (477)
T 1wao_1 88 GKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLDIESMTIEDEYSGP 157 (477)
T ss_dssp TCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------CCSTTTCCTTSSCCCCTTCCSC
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccccchhHhhhhhhhcccccccccc
Confidence 888888888888888888887778777777 777788888888888 777777776444
No 187
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=99.31 E-value=9.7e-12 Score=108.56 Aligned_cols=107 Identities=14% Similarity=0.085 Sum_probs=91.6
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHH
Q 003891 197 NPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPT--YAEAYNN 274 (788)
Q Consensus 197 ~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~--~~~~~~~ 274 (788)
+|++..++..+|.++...|++++|+.+|+++++..|.+..++..+|.++...|++++|+.+++++++..|+ +..++..
T Consensus 2 ~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 81 (112)
T 2kck_A 2 VDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAA 81 (112)
T ss_dssp CCSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHH
Confidence 56677778888888888888888888888888888888888888888888888888888888888888888 8888888
Q ss_pred HHHHHHHc-CCHHHHHHHHHHHHhhCCCCh
Q 003891 275 LGVLYRDA-GSISLAIDAYEQCLKIDPDSR 303 (788)
Q Consensus 275 la~~~~~~-g~~~eA~~~~~~al~l~p~~~ 303 (788)
+|.++... |++++|+++++++++..|++.
T Consensus 82 l~~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 82 KADALRYIEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp HHHHHTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred HHHHHHHHhCCHHHHHHHHHHHhhcccCCC
Confidence 88888888 888888888888888888753
No 188
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.31 E-value=3.2e-10 Score=131.46 Aligned_cols=246 Identities=8% Similarity=0.004 Sum_probs=188.0
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH-HHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q 003891 41 QDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTAL-GCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCL 119 (788)
Q Consensus 41 ~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~-~~~~kal~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 119 (788)
+.....|++++...|.++..|+..+..+...|+.++|. ..|++++...|.+...|..++.+....|++++|.+.|++++
T Consensus 326 ~Rv~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l 405 (679)
T 4e6h_A 326 ARMTYVYMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCI 405 (679)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 44678899999999999999999999999999999997 99999999999999999999999999999999999999998
Q ss_pred hhCCCcHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc-CC
Q 003891 120 AVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHF-NP 198 (788)
Q Consensus 120 ~~~p~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p 198 (788)
...+..... +-... ...++.+..+ ......+|...+.+..+.|+.+.|...|.++++. .+
T Consensus 406 ~~l~~~~~~------~~~~~-------p~~~~~~~~~------~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~ 466 (679)
T 4e6h_A 406 DRIHLDLAA------LMEDD-------PTNESAINQL------KSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKL 466 (679)
T ss_dssp HHHHHHHHH------HHHHS-------TTCHHHHHHH------HHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGG
T ss_pred HHHHHHhhh------hhhcc-------Ccchhhhhhh------ccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC
Confidence 753211000 00000 0000111111 1122345666677777777888888888888876 44
Q ss_pred CCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---CCHHHHHH
Q 003891 199 HCAEACNNLGVIYKDRD-NLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANP---TYAEAYNN 274 (788)
Q Consensus 199 ~~~~~~~~la~~~~~~g-~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p---~~~~~~~~ 274 (788)
....+|...+.+....+ +++.|.++|+++++..|+++..+..++......|+.+.|..+|++++...| ....+|..
T Consensus 467 ~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~ 546 (679)
T 4e6h_A 467 VTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQK 546 (679)
T ss_dssp SCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHH
T ss_pred CChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 44566766676666654 488888888888888888888888888888888888888888888888877 34577888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCChhh
Q 003891 275 LGVLYRDAGSISLAIDAYEQCLKIDPDSRNA 305 (788)
Q Consensus 275 la~~~~~~g~~~eA~~~~~~al~l~p~~~~a 305 (788)
........|+.+.+.+.++++.+..|++...
T Consensus 547 ~~~fE~~~G~~~~~~~v~~R~~~~~P~~~~~ 577 (679)
T 4e6h_A 547 VIFFESKVGSLNSVRTLEKRFFEKFPEVNKL 577 (679)
T ss_dssp HHHHHHHTCCSHHHHHHHHHHHHHSTTCCHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCcHH
Confidence 8888888899999999999999999987543
No 189
>1f0k_A MURG, UDP-N-acetylglucosamine-N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol...; rossmann fold, transferase; 1.90A {Escherichia coli} SCOP: c.87.1.2 PDB: 1nlm_A*
Probab=99.31 E-value=4.8e-11 Score=129.11 Aligned_cols=317 Identities=14% Similarity=0.016 Sum_probs=181.0
Q ss_pred eeEeeccCCcccChhHHhhhhhhcccCCCceEEEEEeccccCChhhHHHHHHHhhhCCeEEEccCC--------------
Q 003891 355 LVIGYVSPDYFTHSVSYFIEAPLVYHDYQNYKVVVYSAVVKADAKTIRFREKVMKKGGIWRDIYGI-------------- 420 (788)
Q Consensus 355 lriGyvS~df~~H~v~~~~~~~l~~~dr~~fev~~Y~~~~~~D~~t~~~r~~~~~~~~~~~~~~~~-------------- 420 (788)
.||.+++.....|-. ....+...+.+.+++|.+++...... ...+ ...+-.+..+...
T Consensus 7 mkIl~~~~~~gG~~~--~~~~la~~L~~~G~~V~v~~~~~~~~--~~~~----~~~g~~~~~~~~~~~~~~~~~~~~~~~ 78 (364)
T 1f0k_A 7 KRLMVMAGGTGGHVF--PGLAVAHHLMAQGWQVRWLGTADRME--ADLV----PKHGIEIDFIRISGLRGKGIKALIAAP 78 (364)
T ss_dssp CEEEEECCSSHHHHH--HHHHHHHHHHTTTCEEEEEECTTSTH--HHHG----GGGTCEEEECCCCCCTTCCHHHHHTCH
T ss_pred cEEEEEeCCCccchh--HHHHHHHHHHHcCCEEEEEecCCcch--hhhc----cccCCceEEecCCccCcCccHHHHHHH
Confidence 578888765544432 22344455555678999887643211 1111 1111123332210
Q ss_pred -----CHHHHHHHHHhCCCcEEEeCCCCCCCCccccccc--CCCCeEEecccCCCCCC------CCCccEEEecCCCCCc
Q 003891 421 -----DEKKVAAMVREDKIDILVELTGHTANNKLGMMAC--QPAPVQVTWIGYPNTTG------LPTIDYRITDSLADPP 487 (788)
Q Consensus 421 -----~~~~~a~~i~~d~idilvdl~g~t~~~~~~~~a~--r~Apvq~~~~g~~~ttg------~~~~Dy~i~d~~~~p~ 487 (788)
....+.+.|++.++||++-..+.. +-...++. .-.|+=++..+.. .| ....|.+++.. +.
T Consensus 79 ~~~~~~~~~l~~~l~~~~pDvv~~~~~~~--~~~~~~~~~~~~~p~v~~~~~~~--~~~~~~~~~~~~d~v~~~~---~~ 151 (364)
T 1f0k_A 79 LRIFNAWRQARAIMKAYKPDVVLGMGGYV--SGPGGLAAWSLGIPVVLHEQNGI--AGLTNKWLAKIATKVMQAF---PG 151 (364)
T ss_dssp HHHHHHHHHHHHHHHHHCCSEEEECSSTT--HHHHHHHHHHTTCCEEEEECSSS--CCHHHHHHTTTCSEEEESS---TT
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEEeCCcC--chHHHHHHHHcCCCEEEEecCCC--CcHHHHHHHHhCCEEEecC---hh
Confidence 123467778888999997643321 11122222 2245544433321 12 23467766531 11
Q ss_pred CccCCCccceEEcCCCcc--ccCCCCCCCCCCCCCCCCC-CCeEEEecCCC--CcCCHHHHHHHHHHHhHcCCcE-EEEe
Q 003891 488 ETKQKHVEELIRLPECFL--CYTPSPEAGPVCPTPALTN-GFITFGSFNNL--AKITPKVLQVWARILCAVPNSR-LVVK 561 (788)
Q Consensus 488 ~~~~~~~e~l~~lp~~~~--~~~~~~~~~~~~~~~~~~~-~~~~f~~~~~~--~K~~~~~~~~~~~il~~~p~~~-l~l~ 561 (788)
. +. ++..+|+..- .|.+. ..+...+++. ..+++.+.++. .|..+.+++++.++.. +.+ ++++
T Consensus 152 -~---~~-~~~~i~n~v~~~~~~~~----~~~~~~~~~~~~~~il~~~g~~~~~k~~~~li~a~~~l~~---~~~~l~i~ 219 (364)
T 1f0k_A 152 -A---FP-NAEVVGNPVRTDVLALP----LPQQRLAGREGPVRVLVVGGSQGARILNQTMPQVAAKLGD---SVTIWHQS 219 (364)
T ss_dssp -S---SS-SCEECCCCCCHHHHTSC----CHHHHHTTCCSSEEEEEECTTTCCHHHHHHHHHHHHHHGG---GEEEEEEC
T ss_pred -h---cC-CceEeCCccchhhcccc----hhhhhcccCCCCcEEEEEcCchHhHHHHHHHHHHHHHhcC---CcEEEEEc
Confidence 1 22 3334443210 01110 0001112333 34455555555 5777777788887754 566 5666
Q ss_pred cCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHHHHhcccccEeecCCCCCCchhHHHHhhhCCceeecCCCccC
Q 003891 562 CKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHA 641 (788)
Q Consensus 562 ~~~~~~~~~~~~l~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~~Dv~Ld~~~~~g~~t~~eal~~GvPvvt~~g~~~~ 641 (788)
|.+ + .+.+++.+++.|++ +|.|.|.+. +....|+.+|+++-|+ |++|++|||++|+|||+.+.....
T Consensus 220 G~~----~-~~~l~~~~~~~~~~--~v~~~g~~~---~~~~~~~~ad~~v~~s---g~~~~~EAma~G~Pvi~~~~~g~~ 286 (364)
T 1f0k_A 220 GKG----S-QQSVEQAYAEAGQP--QHKVTEFID---DMAAAYAWADVVVCRS---GALTVSEIAAAGLPALFVPFQHKD 286 (364)
T ss_dssp CTT----C-HHHHHHHHHHTTCT--TSEEESCCS---CHHHHHHHCSEEEECC---CHHHHHHHHHHTCCEEECCCCCTT
T ss_pred CCc----h-HHHHHHHHhhcCCC--ceEEecchh---hHHHHHHhCCEEEECC---chHHHHHHHHhCCCEEEeeCCCCc
Confidence 665 2 36788888888884 799999973 5667777899999885 599999999999999986532211
Q ss_pred c--cchhHHHhhhCCcccccC-C--HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHHH
Q 003891 642 H--NVGVSLLTKVGLKHLIAK-N--EDEYVQLALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRNMWHRY 716 (788)
Q Consensus 642 ~--r~~~~~l~~~gl~~~ia~-~--~~~y~~~a~~l~~d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~ 716 (788)
. ...+..+...|..-++.. | .+++.+...++ |++.+++++++.++.. ..|+++.+++.+++.|+++-..|
T Consensus 287 ~~q~~~~~~~~~~g~g~~~~~~d~~~~~la~~i~~l--~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~y~~~~~~~ 361 (364)
T 1f0k_A 287 RQQYWNALPLEKAGAAKIIEQPQLSVDAVANTLAGW--SRETLLTMAERARAAS---IPDATERVANEVSRVARALEHHH 361 (364)
T ss_dssp CHHHHHHHHHHHTTSEEECCGGGCCHHHHHHHHHTC--CHHHHHHHHHHHHHTC---CTTHHHHHHHHHHHHHTTC----
T ss_pred hhHHHHHHHHHhCCcEEEeccccCCHHHHHHHHHhc--CHHHHHHHHHHHHHhh---ccCHHHHHHHHHHHHHHHHHhhc
Confidence 1 011334555566333332 3 67887777777 9999999999988663 35899999999999998876554
No 190
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=99.31 E-value=4e-12 Score=142.87 Aligned_cols=136 Identities=15% Similarity=0.112 Sum_probs=123.4
Q ss_pred HHHHHHhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 003891 133 AIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYK 212 (788)
Q Consensus 133 a~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 212 (788)
+..+..+|..+...|++++|+++|+++++.+|++..++.++|.++..+|++++|++.++++++.+|++..+++++|.+|.
T Consensus 6 a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~ 85 (477)
T 1wao_1 6 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM 85 (477)
T ss_dssp HTTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 44567788899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH--HHHcCCHHHHHHHHH-----------HHHHhCCCC
Q 003891 213 DRDNLDKAVECYQMALSIKPNFSQSLNNLGVV--YTVQGKMDAAAEMIE-----------KAIAANPTY 268 (788)
Q Consensus 213 ~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~--~~~~g~~~eA~~~l~-----------kal~~~p~~ 268 (788)
.+|++++|+++|+++++.+|++..++..++.+ +..+|++++|++.++ +++.+.|+.
T Consensus 86 ~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~al~~~~~~ 154 (477)
T 1wao_1 86 ALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLDIESMTIEDEY 154 (477)
T ss_dssp HHTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------CCSTTTCCTTSSCCCCTTC
T ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccccchhHhhhhhhhccccccc
Confidence 99999999999999999999999999999988 889999999999999 777777665
No 191
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.30 E-value=4.6e-11 Score=132.21 Aligned_cols=170 Identities=9% Similarity=0.071 Sum_probs=134.7
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHhCC------CCH
Q 003891 94 AYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNW------HYA 167 (788)
Q Consensus 94 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p------~~~ 167 (788)
++..+|.+|...|++++|++++++++...+...... ....+...++.++...|++++|+.++++++...+ ...
T Consensus 57 al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 135 (434)
T 4b4t_Q 57 SILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSK-TVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKH 135 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHH-HHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchH-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHH
Confidence 467888999999999999999998888766543322 2234566678888888999999999999887532 235
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhc------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC---CC----
Q 003891 168 DAMYNLGVAYGEMLKFDMAIVFYELAFHF------NPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKP---NF---- 234 (788)
Q Consensus 168 ~~~~~la~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p---~~---- 234 (788)
.++..+|.+|...|++++|+..+++++.. .+....++..++.+|...|++++|..++++++...+ ..
T Consensus 136 ~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 215 (434)
T 4b4t_Q 136 SLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTV 215 (434)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHH
T ss_pred HHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHH
Confidence 67889999999999999999999998865 233467889999999999999999999999987632 22
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 003891 235 SQSLNNLGVVYTVQGKMDAAAEMIEKAIAA 264 (788)
Q Consensus 235 ~~~~~~la~~~~~~g~~~eA~~~l~kal~~ 264 (788)
...+..+|.++...+++++|..+|.+++..
T Consensus 216 ~~~~~~~g~~~~~~~~y~~A~~~~~~a~~~ 245 (434)
T 4b4t_Q 216 AELDLMSGILHCEDKDYKTAFSYFFESFES 245 (434)
T ss_dssp HHHHHHHHHHTTSSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 346777888888999999999999998875
No 192
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.29 E-value=5e-11 Score=110.01 Aligned_cols=120 Identities=13% Similarity=0.073 Sum_probs=113.7
Q ss_pred hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHH
Q 003891 162 YNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHC---AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSL 238 (788)
Q Consensus 162 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~ 238 (788)
..+.....++.+|..+...|++++|+..|+++++.+|++ ..++.++|.++...|++++|+.+++++++.+|++..++
T Consensus 23 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 102 (148)
T 2dba_A 23 PGASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKAL 102 (148)
T ss_dssp TTCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHH
T ss_pred cchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHH
Confidence 457788999999999999999999999999999999987 89999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 003891 239 NNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRD 281 (788)
Q Consensus 239 ~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~ 281 (788)
+.+|.++...|++++|+.+|+++++++|++..++..++.+...
T Consensus 103 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 145 (148)
T 2dba_A 103 YRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISGP 145 (148)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHCS
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999888877543
No 193
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=99.29 E-value=3.4e-12 Score=136.81 Aligned_cols=157 Identities=15% Similarity=0.131 Sum_probs=87.4
Q ss_pred HHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 003891 131 NMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVI 210 (788)
Q Consensus 131 ~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 210 (788)
..+..+..+|..+...|++++|+.+|++++...|++. .+...++++++...+. ..+++++|.+
T Consensus 177 ~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~--------~~~~~~~~~~~~~~l~---------~~~~~nla~~ 239 (338)
T 2if4_A 177 GAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDF--------MFQLYGKYQDMALAVK---------NPCHLNIAAC 239 (338)
T ss_dssp HHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHH--------HHTCCHHHHHHHHHHH---------THHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccch--------hhhhcccHHHHHHHHH---------HHHHHHHHHH
Confidence 3455566666666666777777777777666666533 1122333333333221 1488999999
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH-HHHcCCHHHHH
Q 003891 211 YKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVL-YRDAGSISLAI 289 (788)
Q Consensus 211 ~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~-~~~~g~~~eA~ 289 (788)
+..+|++++|+.+|+++++++|++..+++++|.+|..+|++++|+..|+++++++|++..++..++.+ ....+..+++.
T Consensus 240 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~ 319 (338)
T 2if4_A 240 LIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQK 319 (338)
T ss_dssp HHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------------------
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999988 44567788889
Q ss_pred HHHHHHHhhCCCChh
Q 003891 290 DAYEQCLKIDPDSRN 304 (788)
Q Consensus 290 ~~~~~al~l~p~~~~ 304 (788)
..|++++...|++..
T Consensus 320 ~~~~~~l~~~p~~~~ 334 (338)
T 2if4_A 320 EMYKGIFKGKDEGGA 334 (338)
T ss_dssp ---------------
T ss_pred HHHHHhhCCCCCCCC
Confidence 999999999988754
No 194
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=99.29 E-value=6.1e-11 Score=106.95 Aligned_cols=102 Identities=22% Similarity=0.215 Sum_probs=51.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHH
Q 003891 204 CNNLGVIYKDRDNLDKAVECYQMALSIKPNFS---QSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTY---AEAYNNLGV 277 (788)
Q Consensus 204 ~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~---~~~~~~la~ 277 (788)
++.+|.++...|++++|+..|+++++..|++. .+++.+|.++...|++++|+..|+++++.+|++ +.+++.+|.
T Consensus 5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~ 84 (129)
T 2xev_A 5 AYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGL 84 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHH
Confidence 34444444445555555555555554444444 444555555555555555555555555555544 444555555
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCChhh
Q 003891 278 LYRDAGSISLAIDAYEQCLKIDPDSRNA 305 (788)
Q Consensus 278 ~~~~~g~~~eA~~~~~~al~l~p~~~~a 305 (788)
++..+|++++|+..|+++++..|++..+
T Consensus 85 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 112 (129)
T 2xev_A 85 SQYGEGKNTEAQQTLQQVATQYPGSDAA 112 (129)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTSHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHCCCChHH
Confidence 5555555555555555555555544443
No 195
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=99.28 E-value=6.3e-11 Score=106.85 Aligned_cols=105 Identities=17% Similarity=0.205 Sum_probs=99.0
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHH
Q 003891 26 VLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYA---PAYYNLGVVYSELMQYDTALGCYEKAALERPMY---AEAYCNMG 99 (788)
Q Consensus 26 ~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~---~~~~~~la 99 (788)
.++.+|..+...|++++|+..|+++++.+|++. .+++.+|.++...|++++|+..|+++++.+|++ +.+++.+|
T Consensus 4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la 83 (129)
T 2xev_A 4 TAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLG 83 (129)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHH
Confidence 467889999999999999999999999999988 899999999999999999999999999999999 89999999
Q ss_pred HHHHHCCCHHHHHHHHHHHHhhCCCcHHHHH
Q 003891 100 VIYKNRGDLESAIACYERCLAVSPNFEIAKN 130 (788)
Q Consensus 100 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 130 (788)
.++...|++++|+..|+++++..|++.....
T Consensus 84 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 114 (129)
T 2xev_A 84 LSQYGEGKNTEAQQTLQQVATQYPGSDAARV 114 (129)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTSHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCCCChHHHH
Confidence 9999999999999999999999999875543
No 196
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.26 E-value=8e-11 Score=130.25 Aligned_cols=204 Identities=13% Similarity=0.059 Sum_probs=159.1
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHH----------HHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHhCC
Q 003891 95 YCNMGVIYKNRGDLESAIACYERCLAVSPNFEI----------AKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNW 164 (788)
Q Consensus 95 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~----------~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p 164 (788)
....|..+...|++++|++.|.++++..++... .......++..+|.+|...|++++|++++.++++..+
T Consensus 7 ~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~ 86 (434)
T 4b4t_Q 7 KLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMM 86 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 344455556666666666666666666554321 1222344567788888889999999999999998755
Q ss_pred CCH------HHHHHHHHHHHHcCChHHHHHHHHHHHhcC------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--
Q 003891 165 HYA------DAMYNLGVAYGEMLKFDMAIVFYELAFHFN------PHCAEACNNLGVIYKDRDNLDKAVECYQMALSI-- 230 (788)
Q Consensus 165 ~~~------~~~~~la~~~~~~g~~~~A~~~~~~al~~~------p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~-- 230 (788)
... .+...++.++...|++++|+.++++++... +....++.++|.++...|++++|+.++++++..
T Consensus 87 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~ 166 (434)
T 4b4t_Q 87 QFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFK 166 (434)
T ss_dssp TSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHT
T ss_pred HccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHH
Confidence 432 245678888888999999999999998752 233678999999999999999999999999876
Q ss_pred ----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---CC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 003891 231 ----KPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANP---TY----AEAYNNLGVLYRDAGSISLAIDAYEQCLKI 298 (788)
Q Consensus 231 ----~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p---~~----~~~~~~la~~~~~~g~~~eA~~~~~~al~l 298 (788)
.+...+++..++.+|...|++++|..++++++...+ .. ...+..+|.++...|++++|..+|.++++.
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~~ 245 (434)
T 4b4t_Q 167 KLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFES 245 (434)
T ss_dssp TSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHH
T ss_pred hcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 233466899999999999999999999999988732 22 356778899999999999999999999875
No 197
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=99.26 E-value=3.8e-11 Score=107.92 Aligned_cols=112 Identities=17% Similarity=0.235 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-------HHHHHH
Q 003891 168 DAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNF-------SQSLNN 240 (788)
Q Consensus 168 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~-------~~~~~~ 240 (788)
..+..+|.++...|++++|+..|+++++.+|.+..++..+|.++...|++++|+.+++++++..|.+ ..++..
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 3445555555555555555555555555555555555555555555555555555555555554443 445555
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 003891 241 LGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYR 280 (788)
Q Consensus 241 la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~ 280 (788)
+|.++...|++++|+++|+++++..| ++.....++.+..
T Consensus 85 la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~ 123 (131)
T 1elr_A 85 IGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEK 123 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHH
Confidence 55555555555555555555555555 3444444444443
No 198
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=99.25 E-value=5.4e-11 Score=103.73 Aligned_cols=106 Identities=16% Similarity=0.152 Sum_probs=99.9
Q ss_pred CCCChhhHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--
Q 003891 13 DPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPM-- 90 (788)
Q Consensus 13 ~P~~~~a~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~-- 90 (788)
+|++... ++.+|.++...|++++|+..|+++++.+|.+..+++.+|.++...|++++|+.+++++++.+|.
T Consensus 2 ~p~~~~~-------~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~ 74 (112)
T 2kck_A 2 VDQNPEE-------YYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEY 74 (112)
T ss_dssp CCSSTTG-------GGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTT
T ss_pred CCCcHHH-------HHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccc
Confidence 5777666 6777888889999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHC-CCHHHHHHHHHHHHhhCCCc
Q 003891 91 YAEAYCNMGVIYKNR-GDLESAIACYERCLAVSPNF 125 (788)
Q Consensus 91 ~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~p~~ 125 (788)
+..++..+|.++... |++++|++++++++...|..
T Consensus 75 ~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~p~~ 110 (112)
T 2kck_A 75 NKDVWAAKADALRYIEGKEVEAEIAEARAKLEHHHH 110 (112)
T ss_dssp CHHHHHHHHHHHTTCSSCSHHHHHHHHHHGGGCCCC
T ss_pred hHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcccCC
Confidence 999999999999999 99999999999999998875
No 199
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=99.25 E-value=5.4e-11 Score=128.95 Aligned_cols=123 Identities=19% Similarity=0.192 Sum_probs=99.7
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHh----------------cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 003891 169 AMYNLGVAYGEMLKFDMAIVFYELAFH----------------FNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKP 232 (788)
Q Consensus 169 ~~~~la~~~~~~g~~~~A~~~~~~al~----------------~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p 232 (788)
.+..+|..+...|++++|+..|+++++ .+|.+..++.++|.++.++|++++|+.+++++++++|
T Consensus 225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p 304 (370)
T 1ihg_A 225 DLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDP 304 (370)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCc
Confidence 345555566666666666666666655 6677788888999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 003891 233 NFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDA 291 (788)
Q Consensus 233 ~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~~eA~~~ 291 (788)
++..+++.+|.+|..+|++++|+..|+++++++|++..++..++.++..+++++++.+.
T Consensus 305 ~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~k~ 363 (370)
T 1ihg_A 305 SNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEKA 363 (370)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999998888888899888888888777653
No 200
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=99.23 E-value=1.9e-11 Score=130.95 Aligned_cols=102 Identities=13% Similarity=0.122 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH-HH
Q 003891 168 DAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVV-YT 246 (788)
Q Consensus 168 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~-~~ 246 (788)
.+++++|.+|..+|++++|+..|+++++.+|++..+++++|.+|..+|++++|+.+|+++++++|++..++..++.+ ..
T Consensus 231 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~ 310 (338)
T 2if4_A 231 PCHLNIAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQ 310 (338)
T ss_dssp HHHHHHHHHHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------------------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999998 44
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCH
Q 003891 247 VQGKMDAAAEMIEKAIAANPTYA 269 (788)
Q Consensus 247 ~~g~~~eA~~~l~kal~~~p~~~ 269 (788)
..+..+++...|++++...|+++
T Consensus 311 ~~~~~~~a~~~~~~~l~~~p~~~ 333 (338)
T 2if4_A 311 EKALYQKQKEMYKGIFKGKDEGG 333 (338)
T ss_dssp -----------------------
T ss_pred HHHHHHHHHHHHHHhhCCCCCCC
Confidence 56778899999999999988765
No 201
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=99.22 E-value=2.5e-10 Score=102.49 Aligned_cols=115 Identities=23% Similarity=0.244 Sum_probs=103.8
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------HHHHH
Q 003891 24 AIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMY-------AEAYC 96 (788)
Q Consensus 24 a~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~-------~~~~~ 96 (788)
+..++.+|..+...|++++|+..|+++++.+|.+..+++.+|.++...|++++|+.+++++++..|.+ ..++.
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 55688999999999999999999999999999999999999999999999999999999999998876 89999
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHh
Q 003891 97 NMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDL 139 (788)
Q Consensus 97 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~l 139 (788)
.+|.++...|++++|+++|+++++..|+ ......++.+...+
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~ 125 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAEHRT-PDVLKKCQQAEKIL 125 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHH
Confidence 9999999999999999999999999984 55555555554443
No 202
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=99.22 E-value=2.5e-11 Score=112.32 Aligned_cols=91 Identities=22% Similarity=0.222 Sum_probs=85.6
Q ss_pred HcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC
Q 003891 36 LAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQY----------DTALGCYEKAALERPMYAEAYCNMGVIYKNR 105 (788)
Q Consensus 36 ~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~----------~~A~~~~~kal~~~p~~~~~~~~la~~~~~~ 105 (788)
+.+.+++|++.++++++++|+++++|+++|.++...+++ ++|+..|+++++++|++..+|+++|.+|..+
T Consensus 14 r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~l 93 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSF 93 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHh
Confidence 346789999999999999999999999999999999875 5999999999999999999999999999988
Q ss_pred C-----------CHHHHHHHHHHHHhhCCCcH
Q 003891 106 G-----------DLESAIACYERCLAVSPNFE 126 (788)
Q Consensus 106 g-----------~~~~A~~~~~~al~~~p~~~ 126 (788)
| ++++|+++|++|++++|++.
T Consensus 94 g~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~ 125 (158)
T 1zu2_A 94 AFLTPDETEAKHNFDLATQFFQQAVDEQPDNT 125 (158)
T ss_dssp HHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred cccCcchhhhhccHHHHHHHHHHHHHhCCCCH
Confidence 5 89999999999999999976
No 203
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=99.22 E-value=3e-11 Score=111.76 Aligned_cols=94 Identities=18% Similarity=0.215 Sum_probs=63.5
Q ss_pred CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc--
Q 003891 215 DNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGK----------MDAAAEMIEKAIAANPTYAEAYNNLGVLYRDA-- 282 (788)
Q Consensus 215 g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~----------~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~-- 282 (788)
+.+++|++.++++++++|+++++++++|.++...++ +++|+..|+++++++|++.++++++|.+|..+
T Consensus 16 ~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~ 95 (158)
T 1zu2_A 16 LLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAF 95 (158)
T ss_dssp HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcc
Confidence 344555555555555555555555555555554443 45777777777777777777777777777766
Q ss_pred ---------CCHHHHHHHHHHHHhhCCCChhhHHh
Q 003891 283 ---------GSISLAIDAYEQCLKIDPDSRNAGQN 308 (788)
Q Consensus 283 ---------g~~~eA~~~~~~al~l~p~~~~a~~~ 308 (788)
|++++|+++|++|++++|++...+..
T Consensus 96 l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~a 130 (158)
T 1zu2_A 96 LTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKS 130 (158)
T ss_dssp HCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred cCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 48999999999999999988765544
No 204
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=99.22 E-value=1.5e-10 Score=125.35 Aligned_cols=125 Identities=14% Similarity=0.190 Sum_probs=114.4
Q ss_pred ChhhHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH----------------hCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 003891 16 YKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALK----------------IDPHYAPAYYNLGVVYSELMQYDTALG 79 (788)
Q Consensus 16 ~~~a~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~----------------~~p~~~~~~~~lg~~~~~~g~~~~A~~ 79 (788)
+.+.....+..+..+|..++..|++++|+..|+++++ .+|.+..+++++|.+|..+|++++|+.
T Consensus 215 ~~~~~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~ 294 (370)
T 1ihg_A 215 DVDKILLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVD 294 (370)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHH
Confidence 4555567788899999999999999999999999998 777888999999999999999999999
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhh
Q 003891 80 CYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLG 140 (788)
Q Consensus 80 ~~~kal~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg 140 (788)
+++++++.+|++..+++.+|.+|..+|++++|+..|+++++++|++...+..++.++..++
T Consensus 295 ~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~ 355 (370)
T 1ihg_A 295 SCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIK 355 (370)
T ss_dssp HHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999887777776666554
No 205
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=99.21 E-value=7.3e-11 Score=110.13 Aligned_cols=133 Identities=26% Similarity=0.269 Sum_probs=80.5
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC------HH
Q 003891 169 AMYNLGVAYGEMLKFDMAIVFYELAFHFNPHC------AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNF------SQ 236 (788)
Q Consensus 169 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~------~~ 236 (788)
++..+|.++...|++++|+..++++++..+.. ..++..+|.++...|++++|+.+++++++..+.. ..
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 34444444444555555555554444432211 2355566666666666666666666666553321 34
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 003891 237 SLNNLGVVYTVQGKMDAAAEMIEKAIAANP------TYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPD 301 (788)
Q Consensus 237 ~~~~la~~~~~~g~~~eA~~~l~kal~~~p------~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~ 301 (788)
++.++|.++...|++++|+.+++++++..+ ....++..+|.++...|++++|++++++++++...
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 161 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 161 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence 566777777777777777777777766522 11456777888888888888888888888776443
No 206
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=99.21 E-value=7.5e-11 Score=110.04 Aligned_cols=141 Identities=26% Similarity=0.310 Sum_probs=99.4
Q ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----
Q 003891 22 CLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHY------APAYYNLGVVYSELMQYDTALGCYEKAALERPMY---- 91 (788)
Q Consensus 22 ~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~---- 91 (788)
..+.++..+|..+...|++++|+..++++++..+.. ..++..+|.++...|++++|+.+++++++..+..
T Consensus 7 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 86 (164)
T 3ro3_A 7 AQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRA 86 (164)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcH
Confidence 456778888888888999999999999888875432 2477888888888888888888888887764332
Q ss_pred --HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHhC
Q 003891 92 --AEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYN 163 (788)
Q Consensus 92 --~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~ 163 (788)
..++..+|.++...|++++|+.++++++++.+.... ....+.++..+|.++...|++++|+.++++++++.
T Consensus 87 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 159 (164)
T 3ro3_A 87 VEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKD-RIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEIS 159 (164)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccc-hHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 557778888888888888888888888776432211 12234455556666666666666666666666543
No 207
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=99.18 E-value=4.1e-11 Score=106.63 Aligned_cols=93 Identities=12% Similarity=0.191 Sum_probs=62.6
Q ss_pred cCCHHHHHHHHHHHHhh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 003891 214 RDNLDKAVECYQMALSI---KPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAID 290 (788)
Q Consensus 214 ~g~~~eA~~~~~~al~~---~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~~eA~~ 290 (788)
+|++++|+.+|+++++. +|++..++.++|.+|..+|++++|+.+|+++++.+|+++.+++.+|.++..+|++++|+.
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence 46666777777777766 366666777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHhhCCCChhhH
Q 003891 291 AYEQCLKIDPDSRNAG 306 (788)
Q Consensus 291 ~~~~al~l~p~~~~a~ 306 (788)
.++++++..|+++...
T Consensus 83 ~~~~al~~~p~~~~~~ 98 (117)
T 3k9i_A 83 LLLKIIAETSDDETIQ 98 (117)
T ss_dssp HHHHHHHHHCCCHHHH
T ss_pred HHHHHHHhCCCcHHHH
Confidence 7777777777666543
No 208
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.18 E-value=1.6e-08 Score=113.66 Aligned_cols=253 Identities=8% Similarity=-0.084 Sum_probs=138.6
Q ss_pred CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHh---CCCCHHHHHHHHHHHH----HCCCHH
Q 003891 38 GNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQ-YDTALGCYEKAALE---RPMYAEAYCNMGVIYK----NRGDLE 109 (788)
Q Consensus 38 g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~-~~~A~~~~~kal~~---~p~~~~~~~~la~~~~----~~g~~~ 109 (788)
|+++.+..+|++++...| +.+.|..........++ .+.....|+.++.. ++.+...|......+. .+++.+
T Consensus 28 ~~~e~~~~iferal~~~p-s~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~ 106 (493)
T 2uy1_A 28 KDYRSLESLFGRCLKKSY-NLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIE 106 (493)
T ss_dssp TCHHHHHHHHHHHSTTCC-CHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHH
T ss_pred CCHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHH
Confidence 566666666666666666 55566555555554442 34455556666553 4555566665555443 234556
Q ss_pred HHHHHHHHHHhhCCCcHHHH-HHHHH-----------------------------------------HHHHhhhhhhhcC
Q 003891 110 SAIACYERCLAVSPNFEIAK-NNMAI-----------------------------------------ALTDLGTKVKLEG 147 (788)
Q Consensus 110 ~A~~~~~~al~~~p~~~~~~-~~la~-----------------------------------------~l~~lg~~~~~~g 147 (788)
.+...|++++..-..+...+ ..... .+..... ...+
T Consensus 107 ~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~--~E~~ 184 (493)
T 2uy1_A 107 KIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWSVKNAARLID--LEME 184 (493)
T ss_dssp HHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHHH--HHHT
T ss_pred HHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhccHHHHHHHHH--HHhc
Confidence 66666666666322211110 00000 0000000 0111
Q ss_pred C---------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHH--------
Q 003891 148 D---------INQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVI-------- 210 (788)
Q Consensus 148 ~---------~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~-------- 210 (788)
+ .+.....|++++...|..+..|...+..+...|+.++|...|++++.. |.+...+...+..
T Consensus 185 ~~~~~~~~~~~~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~~e~~~~~~ 263 (493)
T 2uy1_A 185 NGMKLGGRPHESRMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSLYYGLVMDEEAVYG 263 (493)
T ss_dssp CTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHHHHHHTTCTHHHH
T ss_pred CCccCcchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHHHHHhhcchhHHHH
Confidence 1 345677899999999999999999999999999999999999999988 8875555444332
Q ss_pred --------------------------------HHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC-CHHHHHHH
Q 003891 211 --------------------------------YKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQG-KMDAAAEM 257 (788)
Q Consensus 211 --------------------------------~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g-~~~eA~~~ 257 (788)
..+.++.+.|...|+++ ...+.....+...|.+....+ +.+.|...
T Consensus 264 ~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~~~ar~i 342 (493)
T 2uy1_A 264 DLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATGSRATPYNI 342 (493)
T ss_dssp HHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCSHHHHHH
T ss_pred HHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHCCChHHHHHH
Confidence 11233445555555555 222223334444444433333 35555555
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003891 258 IEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQC 295 (788)
Q Consensus 258 l~kal~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~a 295 (788)
|+.+++..|+.+..+...+......|+.+.|...|+++
T Consensus 343 fe~al~~~~~~~~~~~~yid~e~~~~~~~~aR~l~er~ 380 (493)
T 2uy1_A 343 FSSGLLKHPDSTLLKEEFFLFLLRIGDEENARALFKRL 380 (493)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHS
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 55555555555555555555555555555555555554
No 209
>2xci_A KDO-transferase, 3-deoxy-D-manno-2-octulosonic acid transferase; KDTA, GSEA, glycosyltransferase superfamily B,; HET: PG4; 2.00A {Aquifex aeolicus} PDB: 2xcu_A*
Probab=99.18 E-value=4e-11 Score=130.19 Aligned_cols=245 Identities=16% Similarity=0.102 Sum_probs=149.4
Q ss_pred HHHHHHHHHhCCCcEEEeCCCCCCCCcccccccCCCCeEEecccCCCC-----CCCCCccEEEecCCCCCcCccC-CCcc
Q 003891 422 EKKVAAMVREDKIDILVELTGHTANNKLGMMACQPAPVQVTWIGYPNT-----TGLPTIDYRITDSLADPPETKQ-KHVE 495 (788)
Q Consensus 422 ~~~~a~~i~~d~idilvdl~g~t~~~~~~~~a~r~Apvq~~~~g~~~t-----tg~~~~Dy~i~d~~~~p~~~~~-~~~e 495 (788)
...+.+.|+..++||++-.....-.+-+. .+.+ |+=+. .+.... .-+...|.+++-.-.+-..... ...
T Consensus 100 ~~~l~~~l~~~~pDiv~~~~~~~~~~~~~-~~~~--p~~~~-~~~~~~~~~~~~~~~~~d~ii~~S~~~~~~l~~~g~~- 174 (374)
T 2xci_A 100 PFSVKRFEELSKPKALIVVEREFWPSLII-FTKV--PKILV-NAYAKGSLIEKILSKKFDLIIMRTQEDVEKFKTFGAK- 174 (374)
T ss_dssp HHHHHHHHHHHCCSEEEEESCCCCHHHHH-HCCS--CEEEE-EECCCCCHHHHHHHTTCSEEEESCHHHHHHHHTTTCC-
T ss_pred HHHHHHHHHHhCCCEEEEECccCcHHHHH-HHhC--CEEEE-EeecCchHHHHHHHHhCCEEEECCHHHHHHHHHcCCC-
Confidence 46788899999999998432221111111 1223 64322 121110 0024567766532111000111 122
Q ss_pred ceEEcCCCccccCCCCCCCCCCCCCCCCCCCeEEEecCCCCcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHH-HHH
Q 003891 496 ELIRLPECFLCYTPSPEAGPVCPTPALTNGFITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVR-HRF 574 (788)
Q Consensus 496 ~l~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~~-~~l 574 (788)
++..+|+.. |.+.+.. .. .+..-.+++++ +..|..+.++++|.++.+..|+.+|+|+|.+ +.+ +.+
T Consensus 175 ki~vi~n~~--f~~~~~~---~~--~l~~~vi~~~~--~~~k~~~~ll~A~~~l~~~~p~~~lvivG~g----~~~~~~l 241 (374)
T 2xci_A 175 RVFSCGNLK--FICQKGK---GI--KLKGEFIVAGS--IHTGEVEIILKAFKEIKKTYSSLKLILVPRH----IENAKIF 241 (374)
T ss_dssp SEEECCCGG--GCCCCCS---CC--CCSSCEEEEEE--ECGGGHHHHHHHHHHHHTTCTTCEEEEEESS----GGGHHHH
T ss_pred eEEEcCCCc--cCCCcCh---hh--hhcCCEEEEEe--CCCchHHHHHHHHHHHHhhCCCcEEEEECCC----HHHHHHH
Confidence 677777642 3332211 11 12221233443 5678889999999999999999999999876 444 578
Q ss_pred HHHHHHcCCCC-------CcEEEcCCcCCcHHHHHhcccccEeecCCCC--CCchhHHHHhhhCCceeecCC-CccCccc
Q 003891 575 LSTLEQLGLES-------LRVDLLPLILLNHDHMQAYSLMDISLDTFPY--AGTTTTCESLYMGVPCVTMAG-SVHAHNV 644 (788)
Q Consensus 575 ~~~~~~~gi~~-------~rv~~~~~~~~~~~~~~~~~~~Dv~Ld~~~~--~g~~t~~eal~~GvPvvt~~g-~~~~~r~ 644 (788)
++.+++.|+.. ++|.|.+.. .+...+|+.+||++-++.+ +||.+.+|||++|+|||+-+. ..+..
T Consensus 242 ~~~~~~~gl~~~~~~~~~~~v~~~~~~---~dl~~~y~~aDv~vl~ss~~e~gg~~~lEAmA~G~PVI~~~~~~~~~e-- 316 (374)
T 2xci_A 242 EKKARDFGFKTSFFENLEGDVILVDRF---GILKELYPVGKIAIVGGTFVNIGGHNLLEPTCWGIPVIYGPYTHKVND-- 316 (374)
T ss_dssp HHHHHHTTCCEEETTCCCSSEEECCSS---SCHHHHGGGEEEEEECSSSSSSCCCCCHHHHTTTCCEEECSCCTTSHH--
T ss_pred HHHHHHCCCceEEecCCCCcEEEECCH---HHHHHHHHhCCEEEECCcccCCCCcCHHHHHHhCCCEEECCCccChHH--
Confidence 88899999862 467887753 5778899999996544333 467999999999999996211 11111
Q ss_pred hhHHHhhhCCcccccCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHhh
Q 003891 645 GVSLLTKVGLKHLIAKNEDEYVQLALQLASDVTALANLRMSLRDLMS 691 (788)
Q Consensus 645 ~~~~l~~~gl~~~ia~~~~~y~~~a~~l~~d~~~~~~~r~~~~~~~~ 691 (788)
....+...|.- +...|.+++.+...+|.+| +.+++|+++.|+.+.
T Consensus 317 ~~~~~~~~G~l-~~~~d~~~La~ai~~ll~d-~~r~~mg~~ar~~~~ 361 (374)
T 2xci_A 317 LKEFLEKEGAG-FEVKNETELVTKLTELLSV-KKEIKVEEKSREIKG 361 (374)
T ss_dssp HHHHHHHTTCE-EECCSHHHHHHHHHHHHHS-CCCCCHHHHHHHHHH
T ss_pred HHHHHHHCCCE-EEeCCHHHHHHHHHHHHhH-HHHHHHHHHHHHHHH
Confidence 01111122321 2347999999999999999 999999999887764
No 210
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=99.17 E-value=3.6e-11 Score=107.01 Aligned_cols=93 Identities=19% Similarity=0.179 Sum_probs=71.1
Q ss_pred cCChHHHHHHHHHHHhc---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 003891 180 MLKFDMAIVFYELAFHF---NPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAE 256 (788)
Q Consensus 180 ~g~~~~A~~~~~~al~~---~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~ 256 (788)
+|++++|+..|+++++. +|++..++.++|.++..+|++++|+.+|+++++.+|+++.++..+|.++...|++++|+.
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence 56777788888888877 477777888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHhCCCCHHHH
Q 003891 257 MIEKAIAANPTYAEAY 272 (788)
Q Consensus 257 ~l~kal~~~p~~~~~~ 272 (788)
.+++++...|+++.+.
T Consensus 83 ~~~~al~~~p~~~~~~ 98 (117)
T 3k9i_A 83 LLLKIIAETSDDETIQ 98 (117)
T ss_dssp HHHHHHHHHCCCHHHH
T ss_pred HHHHHHHhCCCcHHHH
Confidence 8888888888776654
No 211
>3vue_A GBSS-I, granule-bound starch synthase 1, chloroplastic/amyloplastic; rossmann fold, glycosyltransferase, transferase; 2.70A {Oryza sativa japonica group} PDB: 3vuf_A*
Probab=99.17 E-value=5.3e-11 Score=135.05 Aligned_cols=162 Identities=10% Similarity=0.059 Sum_probs=117.9
Q ss_pred CCCeEEEecCCC--CcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHHH
Q 003891 524 NGFITFGSFNNL--AKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHM 601 (788)
Q Consensus 524 ~~~~~f~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~~~~l~~~~~~~gi~~~rv~~~~~~~~~~~~~ 601 (788)
.+.++|++++|+ .|..+.+++++.++++. +.+|+|+|.| .......++...... . +++.|.+... .++..
T Consensus 325 ~~~p~i~~vgRl~~~Kg~~~li~a~~~l~~~--~~~l~l~G~G--~~~~~~~~~~~~~~~--~-~~v~~~~~~~-~~~~~ 396 (536)
T 3vue_A 325 RKIPLIAFIGRLEEQKGPDVMAAAIPELMQE--DVQIVLLGTG--KKKFEKLLKSMEEKY--P-GKVRAVVKFN-APLAH 396 (536)
T ss_dssp TTSCEEEEECCBSGGGCHHHHHHHHHHHTTS--SCEEEEECCB--CHHHHHHHHHHHHHS--T-TTEEEECSCC-HHHHH
T ss_pred CCCcEEEEEeeccccCChHHHHHHHHHhHhh--CCeEEEEecc--CchHHHHHHHHHhhc--C-CceEEEEecc-HHHHH
Confidence 466789999987 89999999999999874 5678887765 234445555544443 3 7898888876 56666
Q ss_pred HhcccccEeecCCCC-CCchhHHHHhhhCCceeecCCCccCccchhHHHhhhCCcccccC--------------------
Q 003891 602 QAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIAK-------------------- 660 (788)
Q Consensus 602 ~~~~~~Dv~Ld~~~~-~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l~~~gl~~~ia~-------------------- 660 (788)
..|+.+|+||-|+-+ +.|.+.+|||++|+|||+ +++| |++|.|.+
T Consensus 397 ~~~~~aD~~v~PS~~E~fgl~~lEAma~G~PvI~-------s~~g-------G~~e~V~dg~~G~~~~~~~~~g~l~~~~ 462 (536)
T 3vue_A 397 LIMAGADVLAVPSRFEPCGLIQLQGMRYGTPCAC-------ASTG-------GLVDTVIEGKTGFHMGRLSVDCKVVEPS 462 (536)
T ss_dssp HHHHHCSEEEECCSCCSSCSHHHHHHHTTCCEEE-------CSCT-------HHHHHCCBTTTEEECCCCCSCTTCCCHH
T ss_pred HHHHhhheeecccccCCCCHHHHHHHHcCCCEEE-------cCCC-------CchheeeCCCCccccccCCCceeEECCC
Confidence 789999999999987 779999999999999997 7776 55554422
Q ss_pred CHHHHHHHH---HHHhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHH
Q 003891 661 NEDEYVQLA---LQLASDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRNMW 713 (788)
Q Consensus 661 ~~~~y~~~a---~~l~~d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ 713 (788)
|.+++.+.. +.+..++.++ ++++ ..|.+ -|++++.++++++.|+++.
T Consensus 463 d~~~la~ai~ral~~~~~~~~~-~~~~---~am~~--~fSW~~~A~~y~~ly~~L~ 512 (536)
T 3vue_A 463 DVKKVAATLKRAIKVVGTPAYE-EMVR---NCMNQ--DLSWKGPAKNWENVLLGLG 512 (536)
T ss_dssp HHHHHHHHHHHHHHHTTSHHHH-HHHH---HHHHS--CCSSHHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHHHhcCcHHHH-HHHH---HHHHh--cCCHHHHHHHHHHHHHHhh
Confidence 455555443 4555666443 3332 33333 4999999999999999873
No 212
>1uqt_A Alpha, alpha-trehalose-phosphate synthase; glycosyltransferase, transferase; HET: U2F; 2.0A {Escherichia coli} SCOP: c.87.1.6 PDB: 1uqu_A* 2wtx_A* 1gz5_A*
Probab=99.09 E-value=9.3e-10 Score=122.68 Aligned_cols=175 Identities=14% Similarity=0.068 Sum_probs=128.3
Q ss_pred CCeEEEecCCC--CcCCHHHHHHHHHHHhHcCC----cEEEEecCCCCC-HH----HHHHHHHHHHHc----CCC-CCcE
Q 003891 525 GFITFGSFNNL--AKITPKVLQVWARILCAVPN----SRLVVKCKPFCC-DS----VRHRFLSTLEQL----GLE-SLRV 588 (788)
Q Consensus 525 ~~~~f~~~~~~--~K~~~~~~~~~~~il~~~p~----~~l~l~~~~~~~-~~----~~~~l~~~~~~~----gi~-~~rv 588 (788)
+..++.+++|+ .|..+..++++.++++..|+ .+|+++|.+..+ .+ .++.+.+.+.+. |.. -..|
T Consensus 254 ~~~vil~VgRl~~~Kgi~~ll~A~~~ll~~~p~~~~~v~Lv~vG~p~~~~~~~~~~l~~~l~~l~~~in~~~g~~~~~~v 333 (482)
T 1uqt_A 254 NVQNIFSVERLDYSKGLPERFLAYEALLEKYPQHHGKIRYTQIAPTSRGDVQAYQDIRHQLENEAGRINGKYGQLGWTPL 333 (482)
T ss_dssp TCEEEEEECCBCGGGCHHHHHHHHHHHHHHCGGGTTTEEEEEECCBCSTTSHHHHHHHHHHHHHHHHHHHHHCBTTBCSE
T ss_pred CCEEEEEEeCCcccCCHHHHHHHHHHHHHhCccccCcEEEEEEECCCccchHHHHHHHHHHHHHHHHHhhhcccCCCceE
Confidence 45667788887 89999999999999999986 678888865321 12 344454444332 332 1246
Q ss_pred EE-cCCcCCcHHHHHhcccccEeecCCCC-CCchhHHHHhhhCC-----ceeecCCCccCccchhHHHhhhCCccccc--
Q 003891 589 DL-LPLILLNHDHMQAYSLMDISLDTFPY-AGTTTTCESLYMGV-----PCVTMAGSVHAHNVGVSLLTKVGLKHLIA-- 659 (788)
Q Consensus 589 ~~-~~~~~~~~~~~~~~~~~Dv~Ld~~~~-~g~~t~~eal~~Gv-----Pvvt~~g~~~~~r~~~~~l~~~gl~~~ia-- 659 (788)
+| .+.++ .++...+|+.||||+-|+-+ +-|.+++|||+||+ |||+ |+.++ ....+. ..+++
T Consensus 334 ~~~~g~v~-~~el~~ly~~ADv~v~pS~~EGfgLv~lEAmA~g~~~~~gpvV~-------S~~~G-~~~~l~-~g~lv~p 403 (482)
T 1uqt_A 334 YYLNQHFD-RKLLMKIFRYSDVGLVTPLRDGMNLVAKEYVAAQDPANPGVLVL-------SQFAG-AANELT-SALIVNP 403 (482)
T ss_dssp EEECSCCC-HHHHHHHHHHCSEEEECCSSBSCCHHHHHHHHHSCTTSCCEEEE-------ETTBG-GGGTCT-TSEEECT
T ss_pred EEeCCCCC-HHHHHHHHHHccEEEECCCcccCCchHHHHHHhCCCCCCCCEEE-------ECCCC-CHHHhC-CeEEECC
Confidence 65 56666 78999999999999999987 77999999999998 7776 44321 111111 33443
Q ss_pred CCHHHHHHHHHHHhcC-HHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHH
Q 003891 660 KNEDEYVQLALQLASD-VTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRNM 712 (788)
Q Consensus 660 ~~~~~y~~~a~~l~~d-~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ 712 (788)
.|.+++.+...++.++ ++.++++.+++++++.+ ||...+++.+.+.|+++
T Consensus 404 ~d~~~lA~ai~~lL~~~~~~r~~~~~~~~~~v~~---~s~~~~a~~~l~~l~~~ 454 (482)
T 1uqt_A 404 YDRDEVAAALDRALTMSLAERISRHAEMLDVIVK---NDINHWQECFISDLKQI 454 (482)
T ss_dssp TCHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHH---TCHHHHHHHHHHHHHHS
T ss_pred CCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh---CCHHHHHHHHHHHHHhc
Confidence 4899999999999984 67788888888888754 79999999999999663
No 213
>3otg_A CALG1; calicheamicin, TDP, structural genomics, PSI-2, protein STRU initiative, center for eukaryotic structural genomics, CESG fold; HET: TYD; 2.08A {Micromonospora echinospora} PDB: 3oth_A*
Probab=99.06 E-value=4.6e-09 Score=115.51 Aligned_cols=166 Identities=14% Similarity=0.101 Sum_probs=117.4
Q ss_pred CCCCeEEEecCCCCcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHHHH
Q 003891 523 TNGFITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQ 602 (788)
Q Consensus 523 ~~~~~~f~~~~~~~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~~~~l~~~~~~~gi~~~rv~~~~~~~~~~~~~~ 602 (788)
+++.+++.++++..+.....+....+.+...+...+++.|++. .++.+. ++ +++|.|.|+++ +..
T Consensus 240 ~~~~~vlv~~G~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~----~~~~l~------~~-~~~v~~~~~~~----~~~ 304 (412)
T 3otg_A 240 TARPLVYLTLGTSSGGTVEVLRAAIDGLAGLDADVLVASGPSL----DVSGLG------EV-PANVRLESWVP----QAA 304 (412)
T ss_dssp TTSCEEEEECTTTTCSCHHHHHHHHHHHHTSSSEEEEECCSSC----CCTTCC------CC-CTTEEEESCCC----HHH
T ss_pred CCCCEEEEEcCCCCcCcHHHHHHHHHHHHcCCCEEEEEECCCC----Chhhhc------cC-CCcEEEeCCCC----HHH
Confidence 5667788888888666667777667777766544444444431 111111 23 37999999973 445
Q ss_pred hcccccEeecCCCCCCchhHHHHhhhCCceeecCCCccCccchhHHHhhhCCcccccC---CHHHHHHHHHHHhcCHHHH
Q 003891 603 AYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIAK---NEDEYVQLALQLASDVTAL 679 (788)
Q Consensus 603 ~~~~~Dv~Ld~~~~~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l~~~gl~~~ia~---~~~~y~~~a~~l~~d~~~~ 679 (788)
.+..||+|+.+ +|++|++|||++|+|||+.+.. ......+..+...|..-++.. |.++..+...+|.+|++.+
T Consensus 305 ~l~~ad~~v~~---~g~~t~~Ea~a~G~P~v~~p~~-~~q~~~~~~v~~~g~g~~~~~~~~~~~~l~~ai~~ll~~~~~~ 380 (412)
T 3otg_A 305 LLPHVDLVVHH---GGSGTTLGALGAGVPQLSFPWA-GDSFANAQAVAQAGAGDHLLPDNISPDSVSGAAKRLLAEESYR 380 (412)
T ss_dssp HGGGCSEEEES---CCHHHHHHHHHHTCCEEECCCS-TTHHHHHHHHHHHTSEEECCGGGCCHHHHHHHHHHHHHCHHHH
T ss_pred HHhcCcEEEEC---CchHHHHHHHHhCCCEEecCCc-hhHHHHHHHHHHcCCEEecCcccCCHHHHHHHHHHHHhCHHHH
Confidence 66679999933 4568999999999999997643 112234566777777666654 8899999999999999999
Q ss_pred HHHHHHHHHHhhcCCCCChHHHHHHHHHHHH
Q 003891 680 ANLRMSLRDLMSKSPVCDGQNFALGLESTYR 710 (788)
Q Consensus 680 ~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~ 710 (788)
+++++..++.... ++.++.++.+|+.+.
T Consensus 381 ~~~~~~~~~~~~~---~~~~~~~~~~~~l~~ 408 (412)
T 3otg_A 381 AGARAVAAEIAAM---PGPDEVVRLLPGFAS 408 (412)
T ss_dssp HHHHHHHHHHHHS---CCHHHHHTTHHHHHC
T ss_pred HHHHHHHHHHhcC---CCHHHHHHHHHHHhc
Confidence 9998877765432 478899999988874
No 214
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.03 E-value=1.8e-07 Score=105.08 Aligned_cols=209 Identities=9% Similarity=-0.040 Sum_probs=147.9
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhcCCHHHHHHH
Q 003891 76 TALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAY 155 (788)
Q Consensus 76 ~A~~~~~kal~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~ 155 (788)
.....|++++...|..+..|...+..+...|+.++|...|++++.. |.+...+...+... .+... ++.....
T Consensus 197 Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~~-e~~~~------~~~l~~~ 268 (493)
T 2uy1_A 197 RMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSLYYGLVM-DEEAV------YGDLKRK 268 (493)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHHHHHHT-TCTHH------HHHHHHH
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHHHHHhhc-chhHH------HHHHHHH
Confidence 4556777777777777777887777777778888888888888877 77654433222110 11100 1111000
Q ss_pred HHHHH------HhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHH
Q 003891 156 YKKAL------YYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRD-NLDKAVECYQMAL 228 (788)
Q Consensus 156 ~~~al------~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-~~~eA~~~~~~al 228 (788)
+.... ...+....+|...+....+.++.+.|...|+++ ...+.....+...+.+....+ +.+.|...|++++
T Consensus 269 ~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al 347 (493)
T 2uy1_A 269 YSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGL 347 (493)
T ss_dssp TC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHH
T ss_pred HHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHH
Confidence 00000 000011245666677777788899999999999 443345667777777766666 6999999999999
Q ss_pred hhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 003891 229 SIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLK 297 (788)
Q Consensus 229 ~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~ 297 (788)
+..|+.+..+...+......|+.+.|...|+++ +.....|......-...|+.+.+.+.++++++
T Consensus 348 ~~~~~~~~~~~~yid~e~~~~~~~~aR~l~er~----~k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 348 LKHPDSTLLKEEFFLFLLRIGDEENARALFKRL----EKTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHS----CCBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH----HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 999999998888898889999999999999998 35678888888888899999999999999885
No 215
>1vgv_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, isomerase; HET: UD1; 2.31A {Escherichia coli} SCOP: c.87.1.3 PDB: 1f6d_A*
Probab=99.02 E-value=6.5e-10 Score=121.09 Aligned_cols=170 Identities=12% Similarity=0.058 Sum_probs=123.2
Q ss_pred CCCeEEEecCCCC---cCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHH
Q 003891 524 NGFITFGSFNNLA---KITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDH 600 (788)
Q Consensus 524 ~~~~~f~~~~~~~---K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~~~~l~~~~~~~gi~~~rv~~~~~~~~~~~~ 600 (788)
++.+++++++++. |..+.++++|.++.++.|+.+|++.+++ .+..++.+++.+ +.. ++|.|+|.++ ..+.
T Consensus 204 ~~~~vl~~~gr~~~~~kg~~~li~a~~~l~~~~~~~~l~i~~g~--~~~~~~~l~~~~---~~~-~~v~~~g~~~-~~~~ 276 (384)
T 1vgv_A 204 DKKMILVTGHRRESFGRGFEEICHALADIATTHQDIQIVYPVHL--NPNVREPVNRIL---GHV-KNVILIDPQE-YLPF 276 (384)
T ss_dssp TSEEEEEECCCBSSCCHHHHHHHHHHHHHHHHCTTEEEEEECCB--CHHHHHHHHHHH---TTC-TTEEEECCCC-HHHH
T ss_pred CCCEEEEEeCCccccchHHHHHHHHHHHHHhhCCCeEEEEEcCC--CHHHHHHHHHHh---hcC-CCEEEeCCCC-HHHH
Confidence 4556788888764 7779999999999999999998885332 123555555543 322 6899988876 5788
Q ss_pred HHhcccccEeecCCCCCCchhHHHHhhhCCceeecCC-CccCccchhHHHhhhCCcccccCCHHHHHHHHHHHhcCHHHH
Q 003891 601 MQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAG-SVHAHNVGVSLLTKVGLKHLIAKNEDEYVQLALQLASDVTAL 679 (788)
Q Consensus 601 ~~~~~~~Dv~Ld~~~~~g~~t~~eal~~GvPvvt~~g-~~~~~r~~~~~l~~~gl~~~ia~~~~~y~~~a~~l~~d~~~~ 679 (788)
...|+.||+++-|+ |+ +++|||++|+|||+.+. .. ..-+...|..-++..|.+++.+...++.+|++.+
T Consensus 277 ~~~~~~ad~~v~~S---g~-~~lEA~a~G~PvI~~~~~~~------~~e~v~~g~g~lv~~d~~~la~~i~~ll~d~~~~ 346 (384)
T 1vgv_A 277 VWLMNHAWLILTDS---GG-IQEEAPSLGKPVLVMRDTTE------RPEAVTAGTVRLVGTDKQRIVEEVTRLLKDENEY 346 (384)
T ss_dssp HHHHHHCSEEEESS---ST-GGGTGGGGTCCEEEESSCCS------CHHHHHHTSEEEECSSHHHHHHHHHHHHHCHHHH
T ss_pred HHHHHhCcEEEECC---cc-hHHHHHHcCCCEEEccCCCC------cchhhhCCceEEeCCCHHHHHHHHHHHHhChHHH
Confidence 89999999999877 44 48999999999998642 11 1112334633344359999999999999999999
Q ss_pred HHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHH
Q 003891 680 ANLRMSLRDLMSKSPVCDGQNFALGLESTYRNMW 713 (788)
Q Consensus 680 ~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ 713 (788)
++|+++.++. ..-|+++++++.+++.|.+.-
T Consensus 347 ~~~~~~~~~~---~~~~~~~~i~~~~~~~~~~~~ 377 (384)
T 1vgv_A 347 QAMSRAHNPY---GDGQACSRILEALKNNRISLG 377 (384)
T ss_dssp HHHHSSCCTT---CCSCHHHHHHHHHHHTCCCC-
T ss_pred hhhhhccCCC---cCCCHHHHHHHHHHHHHHhhc
Confidence 9888766533 245788888888888776543
No 216
>2x0d_A WSAF; GT4 family, transferase; HET: MSE; 2.28A {Geobacillus stearothermophilus} PDB: 2x0f_A* 2x0e_A*
Probab=99.00 E-value=1.6e-10 Score=127.07 Aligned_cols=151 Identities=9% Similarity=0.002 Sum_probs=106.1
Q ss_pred CCcCCHHHHHHHHHHHhHcCC---cEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHHHHhcccccEee
Q 003891 535 LAKITPKVLQVWARILCAVPN---SRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISL 611 (788)
Q Consensus 535 ~~K~~~~~~~~~~~il~~~p~---~~l~l~~~~~~~~~~~~~l~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~~Dv~L 611 (788)
..|..+.+++++.++.+..|+ .+|+++|.+... .++|+. ++|.|+|.++ .++....|+.||||+
T Consensus 253 ~~Kg~~~li~A~~~l~~~~~~~~~~~l~ivG~~~~~-----------~~l~~~-~~v~f~G~~~-~~~l~~~~~~adv~v 319 (413)
T 2x0d_A 253 KRNAFTLIVEALKIFVQKYDRSNEWKIISVGEKHKD-----------IALGKG-IHLNSLGKLT-LEDYADLLKRSSIGI 319 (413)
T ss_dssp GGGCHHHHHHHHHHHHHHCTTGGGCEEEEEESCCCC-----------EEEETT-EEEEEEESCC-HHHHHHHHHHCCEEE
T ss_pred hccCHHHHHHHHHHHHHhCCCCCceEEEEEcCCchh-----------hhcCCc-CcEEEcCCCC-HHHHHHHHHhCCEEE
Confidence 468889999999999988886 799999976321 346776 8999999987 789999999999999
Q ss_pred cCCCC-CCchhHHHHhhhCCceeecCCCccCccchhHHHhhhCCccc-c-cCCHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 003891 612 DTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHL-I-AKNEDEYVQLALQLASDVTALANLRMSLRD 688 (788)
Q Consensus 612 d~~~~-~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l~~~gl~~~-i-a~~~~~y~~~a~~l~~d~~~~~~~r~~~~~ 688 (788)
-|+.+ +.|.+.+|||+||+|||+-.|. ... +. .-|-.++ + ..|++++.+...+|.+|++++++ +.++
T Consensus 320 ~pS~~E~~g~~~lEAmA~G~PVV~~~~g-~~e-----~v-~~~~~G~lv~~~d~~~la~ai~~ll~~~~~~~~---~~~~ 389 (413)
T 2x0d_A 320 SLMISPHPSYPPLEMAHFGLRVITNKYE-NKD-----LS-NWHSNIVSLEQLNPENIAETLVELCMSFNNRDV---DKKE 389 (413)
T ss_dssp CCCSSSSCCSHHHHHHHTTCEEEEECBT-TBC-----GG-GTBTTEEEESSCSHHHHHHHHHHHHHHTC----------C
T ss_pred EecCCCCCCcHHHHHHhCCCcEEEeCCC-cch-----hh-hcCCCEEEeCCCCHHHHHHHHHHHHcCHHHHHH---hHHH
Confidence 99975 7799999999999999984332 111 11 2244454 3 36899999999999999887666 2222
Q ss_pred HhhcCCCCChHHHHHHHHHHHHHH
Q 003891 689 LMSKSPVCDGQNFALGLESTYRNM 712 (788)
Q Consensus 689 ~~~~~~~~~~~~~~~~~e~~~~~~ 712 (788)
+ ...|+++..+++ .+.|+++
T Consensus 390 ~---~~~~~W~~~~~~-~~~~~~l 409 (413)
T 2x0d_A 390 S---SNMMFYINEFNE-FSFIKEI 409 (413)
T ss_dssp C---BSCGGGCCCC----TTHHHH
T ss_pred H---HHhCCHHHHHHH-HHHHHHH
Confidence 2 234677666555 3344444
No 217
>3beo_A UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, allosteric, regulation, isomerase; HET: UD1 UDP; 1.70A {Bacillus anthracis} PDB: 1o6c_A
Probab=99.00 E-value=1.2e-09 Score=118.60 Aligned_cols=167 Identities=14% Similarity=0.100 Sum_probs=119.5
Q ss_pred CCCCeEEEecCCCC---cCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHH
Q 003891 523 TNGFITFGSFNNLA---KITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHD 599 (788)
Q Consensus 523 ~~~~~~f~~~~~~~---K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~~~~l~~~~~~~gi~~~rv~~~~~~~~~~~ 599 (788)
+++.++++++++.. |..+.++++|.++.+..|+.++++.+++ ....++.+++.+ +.. ++|.|+|.++ ..+
T Consensus 203 ~~~~~vl~~~gr~~~~~K~~~~li~a~~~l~~~~~~~~~i~~~g~--~~~~~~~~~~~~---~~~-~~v~~~g~~~-~~~ 275 (375)
T 3beo_A 203 GNNRLVLMTAHRRENLGEPMRNMFRAIKRLVDKHEDVQVVYPVHM--NPVVRETANDIL---GDY-GRIHLIEPLD-VID 275 (375)
T ss_dssp TTSEEEEEECCCGGGTTHHHHHHHHHHHHHHHHCTTEEEEEECCS--CHHHHHHHHHHH---TTC-TTEEEECCCC-HHH
T ss_pred cCCCeEEEEecccccchhHHHHHHHHHHHHHhhCCCeEEEEeCCC--CHHHHHHHHHHh---hcc-CCEEEeCCCC-HHH
Confidence 34566788888764 8889999999999988999987663332 222334443332 333 6999999877 568
Q ss_pred HHHhcccccEeecCCCCCCchhHHHHhhhCCceeecCCCccCccchhHHHhhhCCcccc-cCCHHHHHHHHHHHhcCHHH
Q 003891 600 HMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLI-AKNEDEYVQLALQLASDVTA 678 (788)
Q Consensus 600 ~~~~~~~~Dv~Ld~~~~~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l~~~gl~~~i-a~~~~~y~~~a~~l~~d~~~ 678 (788)
....|..+|+++-|+ |.+++|||++|+|||+... ..+ . ..+ ..-| ..++ ..|.+++.+...+|.+|++.
T Consensus 276 ~~~~~~~ad~~v~~s----g~~~lEA~a~G~Pvi~~~~--~~~-~-~e~-v~~g-~g~~v~~d~~~la~~i~~ll~~~~~ 345 (375)
T 3beo_A 276 FHNVAARSYLMLTDS----GGVQEEAPSLGVPVLVLRD--TTE-R-PEG-IEAG-TLKLAGTDEETIFSLADELLSDKEA 345 (375)
T ss_dssp HHHHHHTCSEEEECC----HHHHHHHHHHTCCEEECSS--CCS-C-HHH-HHTT-SEEECCSCHHHHHHHHHHHHHCHHH
T ss_pred HHHHHHhCcEEEECC----CChHHHHHhcCCCEEEecC--CCC-C-cee-ecCC-ceEEcCCCHHHHHHHHHHHHhChHh
Confidence 889999999999776 5559999999999998631 011 1 112 2335 4443 36999999999999999999
Q ss_pred HHHHHHHHHHHhhcCCCCChHHHHHHHHHHH
Q 003891 679 LANLRMSLRDLMSKSPVCDGQNFALGLESTY 709 (788)
Q Consensus 679 ~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~ 709 (788)
+++|+++.++.. .-|+++++++.+++.+
T Consensus 346 ~~~~~~~~~~~~---~~~~~~~i~~~~~~~~ 373 (375)
T 3beo_A 346 HDKMSKASNPYG---DGRASERIVEAILKHF 373 (375)
T ss_dssp HHHHCCCCCTTC---CSCHHHHHHHHHHHHT
T ss_pred HhhhhhcCCCCC---CCcHHHHHHHHHHHHh
Confidence 888887665432 3478888888887765
No 218
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.96 E-value=4.6e-10 Score=97.98 Aligned_cols=94 Identities=16% Similarity=0.247 Sum_probs=71.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHH
Q 003891 201 AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTY------AEAYNN 274 (788)
Q Consensus 201 ~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~------~~~~~~ 274 (788)
...+..+|.++...|++++|+..|+++++.+|+++.++.++|.++..+|++++|++.++++++++|++ ..+++.
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 83 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQYR 83 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 45677777777777777777777777777777777777778888878888888888888887777777 777777
Q ss_pred HHHHHHHcCCHHHHHHHHHH
Q 003891 275 LGVLYRDAGSISLAIDAYEQ 294 (788)
Q Consensus 275 la~~~~~~g~~~eA~~~~~~ 294 (788)
+|.++..+|++++|+..+++
T Consensus 84 ~~~~~~~~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 84 LELAQGAVGSVQIPVVEVDE 103 (111)
T ss_dssp HHHHHHHHHCCCCCSSSSSS
T ss_pred HHHHHHHHHhHhhhHhHHHH
Confidence 77777777776666655443
No 219
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.96 E-value=3.7e-09 Score=93.33 Aligned_cols=81 Identities=22% Similarity=0.254 Sum_probs=38.9
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 003891 186 AIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAAN 265 (788)
Q Consensus 186 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~ 265 (788)
|+..|+++++.+|++..+++.+|.++...|++++|+.+|+++++.+|++..++..+|.++...|++++|+..|++++++.
T Consensus 4 a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 83 (115)
T 2kat_A 4 ITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAAA 83 (115)
T ss_dssp HHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 34444444444444444444444444444444444444444444444444444444444444444444444444444443
Q ss_pred C
Q 003891 266 P 266 (788)
Q Consensus 266 p 266 (788)
|
T Consensus 84 ~ 84 (115)
T 2kat_A 84 Q 84 (115)
T ss_dssp H
T ss_pred c
Confidence 3
No 220
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.95 E-value=4.7e-09 Score=92.66 Aligned_cols=85 Identities=25% Similarity=0.280 Sum_probs=81.2
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Q 003891 41 QDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLA 120 (788)
Q Consensus 41 ~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 120 (788)
++|+..|+++++.+|++..+++.+|.++...|++++|+..|+++++.+|.+..+++.+|.++...|++++|+..|+++++
T Consensus 2 ~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 2 QAITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp CCHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 35889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCc
Q 003891 121 VSPNF 125 (788)
Q Consensus 121 ~~p~~ 125 (788)
+.|..
T Consensus 82 ~~~~~ 86 (115)
T 2kat_A 82 AAQSR 86 (115)
T ss_dssp HHHHH
T ss_pred hcccc
Confidence 87753
No 221
>3tsa_A SPNG, NDP-rhamnosyltransferase; glycosyltransferase; HET: GLC; 1.70A {Saccharopolyspora spinosa} PDB: 3uyk_A* 3uyl_A*
Probab=98.94 E-value=1.3e-08 Score=111.15 Aligned_cols=165 Identities=12% Similarity=0.102 Sum_probs=117.3
Q ss_pred CCCCeEEEecCCC--CcCC-HHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHH
Q 003891 523 TNGFITFGSFNNL--AKIT-PKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHD 599 (788)
Q Consensus 523 ~~~~~~f~~~~~~--~K~~-~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~~~~l~~~~~~~gi~~~rv~~~~~~~~~~~ 599 (788)
++..+++.++++. .|.. ..+++...+. ...|+.++++.+++ ..++.+. ++ +++|.+.++++ ..+
T Consensus 216 ~~~~~vlv~~G~~~~~~~~~~~~~~~~~~~-~~~p~~~~v~~~~~----~~~~~l~------~~-~~~v~~~~~~~-~~~ 282 (391)
T 3tsa_A 216 TSARRVCICMGRMVLNATGPAPLLRAVAAA-TELPGVEAVIAVPP----EHRALLT------DL-PDNARIAESVP-LNL 282 (391)
T ss_dssp CSSEEEEEECCHHHHHHHCSHHHHHHHHHH-HTSTTEEEEEECCG----GGGGGCT------TC-CTTEEECCSCC-GGG
T ss_pred CCCCEEEEEcCCCCCcccchHHHHHHHHHh-ccCCCeEEEEEECC----cchhhcc------cC-CCCEEEeccCC-HHH
Confidence 4556778888877 3445 7888888888 88899999888765 2122221 33 47899999976 444
Q ss_pred HHHhcccccEeecCCCCCCchhHHHHhhhCCceeecCCCccCccchhHHHhhhCCcccccC-----CHHHHHHHHHHHhc
Q 003891 600 HMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIAK-----NEDEYVQLALQLAS 674 (788)
Q Consensus 600 ~~~~~~~~Dv~Ld~~~~~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l~~~gl~~~ia~-----~~~~y~~~a~~l~~ 674 (788)
. +..||+++. -+|+.|++|||++|+|+|+++-. ......+..+...|..-++.. |.++..+...++.+
T Consensus 283 l---l~~ad~~v~---~~G~~t~~Ea~~~G~P~v~~p~~-~~q~~~a~~~~~~g~g~~~~~~~~~~~~~~l~~ai~~ll~ 355 (391)
T 3tsa_A 283 F---LRTCELVIC---AGGSGTAFTATRLGIPQLVLPQY-FDQFDYARNLAAAGAGICLPDEQAQSDHEQFTDSIATVLG 355 (391)
T ss_dssp T---GGGCSEEEE---CCCHHHHHHHHHTTCCEEECCCS-TTHHHHHHHHHHTTSEEECCSHHHHTCHHHHHHHHHHHHT
T ss_pred H---HhhCCEEEe---CCCHHHHHHHHHhCCCEEecCCc-ccHHHHHHHHHHcCCEEecCcccccCCHHHHHHHHHHHHc
Confidence 4 477999992 25667999999999999998541 122334556777787766654 78999999999999
Q ss_pred CHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHH
Q 003891 675 DVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYR 710 (788)
Q Consensus 675 d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~ 710 (788)
|++.++++++..+.... . ...++.++.+|+...
T Consensus 356 ~~~~~~~~~~~~~~~~~-~--~~~~~~~~~i~~~~~ 388 (391)
T 3tsa_A 356 DTGFAAAAIKLSDEITA-M--PHPAALVRTLENTAA 388 (391)
T ss_dssp CTHHHHHHHHHHHHHHT-S--CCHHHHHHHHHHC--
T ss_pred CHHHHHHHHHHHHHHHc-C--CCHHHHHHHHHHHHh
Confidence 99999998876655432 2 467788888876543
No 222
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.92 E-value=9.1e-09 Score=86.02 Aligned_cols=84 Identities=42% Similarity=0.589 Sum_probs=57.4
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 003891 200 CAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLY 279 (788)
Q Consensus 200 ~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~ 279 (788)
+..++..+|.++...|++++|+.+|+++++.+|++..++..+|.++...|++++|+.+++++++.+|++..++..+|.++
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~ 87 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAK 87 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 34566666666667777777777777777766766667777777777777777777777777777777777777777666
Q ss_pred HHcC
Q 003891 280 RDAG 283 (788)
Q Consensus 280 ~~~g 283 (788)
..+|
T Consensus 88 ~~~g 91 (91)
T 1na3_A 88 QKQG 91 (91)
T ss_dssp HHHC
T ss_pred HhcC
Confidence 5543
No 223
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.92 E-value=6.1e-10 Score=97.21 Aligned_cols=94 Identities=13% Similarity=0.175 Sum_probs=78.2
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHH
Q 003891 24 AIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMY------AEAYCN 97 (788)
Q Consensus 24 a~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~------~~~~~~ 97 (788)
+..++.+|..+...|++++|+..|+++++.+|+++.+++++|.++...|++++|+..++++++.+|++ ..++..
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 83 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQYR 83 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 34577888888888888889888888888888888888888888888888888888888888888888 788888
Q ss_pred HHHHHHHCCCHHHHHHHHHH
Q 003891 98 MGVIYKNRGDLESAIACYER 117 (788)
Q Consensus 98 la~~~~~~g~~~~A~~~~~~ 117 (788)
+|.++...|++++|+..+++
T Consensus 84 ~~~~~~~~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 84 LELAQGAVGSVQIPVVEVDE 103 (111)
T ss_dssp HHHHHHHHHCCCCCSSSSSS
T ss_pred HHHHHHHHHhHhhhHhHHHH
Confidence 88888888877766655543
No 224
>3t5t_A Putative glycosyltransferase; GTB fold, pseudoglycosyltransferase; 1.70A {Streptomyces hygroscopicus} PDB: 4f97_A* 4f96_B* 4f9f_A* 3t7d_A*
Probab=98.88 E-value=2.2e-08 Score=110.47 Aligned_cols=176 Identities=10% Similarity=0.011 Sum_probs=128.0
Q ss_pred CCeEEEecCCC--CcCCHHHHHHHHHHHhHcCC---cEEEEecCCCC-CHH----HHHHHHHHHHHc----CCCCCcEEE
Q 003891 525 GFITFGSFNNL--AKITPKVLQVWARILCAVPN---SRLVVKCKPFC-CDS----VRHRFLSTLEQL----GLESLRVDL 590 (788)
Q Consensus 525 ~~~~f~~~~~~--~K~~~~~~~~~~~il~~~p~---~~l~l~~~~~~-~~~----~~~~l~~~~~~~----gi~~~rv~~ 590 (788)
+..++.+++|+ .|..+..++++ +++++.|+ .+|+++|.+.. +.+ +++.+.+.+.+. |.. +|+|
T Consensus 280 ~~~lIl~VgRLd~~KGi~~lL~Af-~ll~~~P~~~~v~Lv~Vg~psr~~~~~y~~l~~~l~~lv~~in~~~g~~--~V~f 356 (496)
T 3t5t_A 280 GHRLVVHSGRTDPIKNAERAVRAF-VLAARGGGLEKTRMLVRMNPNRLYVPANADYVHRVETAVAEANAELGSD--TVRI 356 (496)
T ss_dssp TSEEEEEEEESSGGGCHHHHHHHH-HHHHHTSSCTTEEEEEEEECCCTTSHHHHHHHHHHHHHHHHHHHHHCTT--SEEE
T ss_pred CceEEEEcccCccccCHHHHHHHH-HHHHhCcccceEEEEEEECCCCCCchHHHHHHHHHHHHHHHhccccCCc--CEEE
Confidence 34566677877 99999999999 99999997 45887775432 222 334444443332 443 7999
Q ss_pred cCCcCCcHHHHHhcccccEeecCCCC-CCchhHHHHhhhC---CceeecCCCccCccchhHHHhhhCCcccc--cCCHHH
Q 003891 591 LPLILLNHDHMQAYSLMDISLDTFPY-AGTTTTCESLYMG---VPCVTMAGSVHAHNVGVSLLTKVGLKHLI--AKNEDE 664 (788)
Q Consensus 591 ~~~~~~~~~~~~~~~~~Dv~Ld~~~~-~g~~t~~eal~~G---vPvvt~~g~~~~~r~~~~~l~~~gl~~~i--a~~~~~ 664 (788)
++.++ .++..++|+.+|||+-|+-+ +-|.+++|||+|| .|+|. |..+++ ...+|-..++ ..|.++
T Consensus 357 ~g~v~-~~el~aly~~ADv~vv~SlrEGfgLv~~EamA~~~~~g~lVl-------Se~aGa-~~~l~~~allVnP~D~~~ 427 (496)
T 3t5t_A 357 DNDND-VNHTIACFRRADLLIFNSTVDGQNLSTFEAPLVNERDADVIL-------SETCGA-AEVLGEYCRSVNPFDLVE 427 (496)
T ss_dssp EECCC-HHHHHHHHHHCSEEEECCSSBSCCSHHHHHHHHCSSCCEEEE-------ETTBTT-HHHHGGGSEEECTTBHHH
T ss_pred eCCCC-HHHHHHHHHhccEEEECcccccCChhHHHHHHhCCCCCCEEE-------eCCCCC-HHHhCCCEEEECCCCHHH
Confidence 99876 78999999999999999988 7799999999995 56654 444321 1112222333 358999
Q ss_pred HHHHHHHHhcCH-HHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHH
Q 003891 665 YVQLALQLASDV-TALANLRMSLRDLMSKSPVCDGQNFALGLESTYRNMWHR 715 (788)
Q Consensus 665 y~~~a~~l~~d~-~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~ 715 (788)
..+...++.+++ +.++++.+++++++.+ +|...+++.+.+.++....+
T Consensus 428 lA~AI~~aL~m~~~er~~r~~~~~~~V~~---~d~~~W~~~fl~~L~~~~~~ 476 (496)
T 3t5t_A 428 QAEAISAALAAGPRQRAEAAARRRDAARP---WTLEAWVQAQLDGLAADHAA 476 (496)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHHHHHTT---CBHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHH---CCHHHHHHHHHHHHhhcccc
Confidence 999988888764 6777777888888754 68999999999999888654
No 225
>2hy7_A Glucuronosyltransferase GUMK; glycosyltransferases, xanthan, membrane-associated proteins; 1.90A {Xanthomonas campestris} PDB: 2q6v_A* 3cv3_A* 3cuy_A*
Probab=98.86 E-value=3.6e-09 Score=116.21 Aligned_cols=143 Identities=10% Similarity=0.039 Sum_probs=111.0
Q ss_pred eEEEecCCCCcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHHHHhccc
Q 003891 527 ITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSL 606 (788)
Q Consensus 527 ~~f~~~~~~~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~~~~l~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~ 606 (788)
+++++++++.+.- .+ +..+.+..|+.+|+|+|.| + +++.|+. ++|.|+|.++ .++....|+.
T Consensus 223 ~~i~~vGrl~~~K-g~---~~~l~~~~~~~~l~ivG~g----~--------~~~~~l~-~~V~f~G~~~-~~~l~~~~~~ 284 (406)
T 2hy7_A 223 IHAVAVGSMLFDP-EF---FVVASKAFPQVTFHVIGSG----M--------GRHPGYG-DNVIVYGEMK-HAQTIGYIKH 284 (406)
T ss_dssp EEEEEECCTTBCH-HH---HHHHHHHCTTEEEEEESCS----S--------CCCTTCC-TTEEEECCCC-HHHHHHHHHT
T ss_pred cEEEEEecccccc-CH---HHHHHHhCCCeEEEEEeCc----h--------HHhcCCC-CCEEEcCCCC-HHHHHHHHHh
Confidence 6788888874432 22 6777778899999999976 2 4567887 8999999987 6888999999
Q ss_pred ccEeecCCCC-CCchhHHHHh-------hhCCceeecCCCccCccchhHHHhhhCCcccc---cCCHHHHHHHHHHHhcC
Q 003891 607 MDISLDTFPY-AGTTTTCESL-------YMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLI---AKNEDEYVQLALQLASD 675 (788)
Q Consensus 607 ~Dv~Ld~~~~-~g~~t~~eal-------~~GvPvvt~~g~~~~~r~~~~~l~~~gl~~~i---a~~~~~y~~~a~~l~~d 675 (788)
+|+++-|+.+ +.+.+.+||| ++|+|||+-. + +. -|..+++ ..|.+++++...++.+|
T Consensus 285 adv~v~ps~~E~~~~~~lEAm~Kl~eYla~G~PVIas~-------~----v~-~~~~G~l~v~~~d~~~la~ai~~ll~~ 352 (406)
T 2hy7_A 285 ARFGIAPYASEQVPVYLADSSMKLLQYDFFGLPAVCPN-------A----VV-GPYKSRFGYTPGNADSVIAAITQALEA 352 (406)
T ss_dssp CSEEECCBSCSCCCTTHHHHCHHHHHHHHHTCCEEEEG-------G----GT-CSCSSEEEECTTCHHHHHHHHHHHHHC
T ss_pred cCEEEECCCcccCchHHHHHHHHHHHHhhCCCcEEEeh-------h----cc-cCcceEEEeCCCCHHHHHHHHHHHHhC
Confidence 9999999977 6689999999 9999999843 2 11 1333433 46999999999999998
Q ss_pred HHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHH--HHH
Q 003891 676 VTALANLRMSLRDLMSKSPVCDGQNFALGLEST--YRN 711 (788)
Q Consensus 676 ~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~--~~~ 711 (788)
++ + .....|+++..++++++. |.+
T Consensus 353 ~~---------~---~~~~~~sw~~~a~~~~~~~~y~~ 378 (406)
T 2hy7_A 353 PR---------V---RYRQCLNWSDTTDRVLDPRAYPE 378 (406)
T ss_dssp CC---------C---CCSCCCBHHHHHHHHHCGGGSGG
T ss_pred cc---------h---hhhhcCCHHHHHHHHHHhhcccc
Confidence 86 1 123558999999999888 654
No 226
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.86 E-value=2.6e-08 Score=83.11 Aligned_cols=81 Identities=35% Similarity=0.514 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 003891 25 IVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKN 104 (788)
Q Consensus 25 ~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~ 104 (788)
..++.+|..+...|++++|+..|+++++.+|++..+++.+|.++...|++++|+.+++++++.+|++..++..+|.++..
T Consensus 10 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~ 89 (91)
T 1na3_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQK 89 (91)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh
Confidence 34566666666777777777777777777777777777777777777777777777777777777777777777766655
Q ss_pred C
Q 003891 105 R 105 (788)
Q Consensus 105 ~ 105 (788)
.
T Consensus 90 ~ 90 (91)
T 1na3_A 90 Q 90 (91)
T ss_dssp H
T ss_pred c
Confidence 4
No 227
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.83 E-value=9.7e-09 Score=114.61 Aligned_cols=127 Identities=9% Similarity=-0.038 Sum_probs=105.5
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhc-----CCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----CCCC---H
Q 003891 172 NLGVAYGEMLKFDMAIVFYELAFHF-----NPH---CAEACNNLGVIYKDRDNLDKAVECYQMALSI-----KPNF---S 235 (788)
Q Consensus 172 ~la~~~~~~g~~~~A~~~~~~al~~-----~p~---~~~~~~~la~~~~~~g~~~eA~~~~~~al~~-----~p~~---~ 235 (788)
..+..+..+|+|++|+..+++++++ .++ ...++.++|.+|..+|+|++|+.++++++++ .+++ .
T Consensus 314 e~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a 393 (490)
T 3n71_A 314 EKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLG 393 (490)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHH
Confidence 3445567899999999999999976 233 4678899999999999999999999999976 3444 4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 003891 236 QSLNNLGVVYTVQGKMDAAAEMIEKAIAA-----NPTYA---EAYNNLGVLYRDAGSISLAIDAYEQCLKI 298 (788)
Q Consensus 236 ~~~~~la~~~~~~g~~~eA~~~l~kal~~-----~p~~~---~~~~~la~~~~~~g~~~eA~~~~~~al~l 298 (788)
..+++||.+|..+|++++|+.+|++++++ .|+++ +...+++.++..++.+++|...|+++.+.
T Consensus 394 ~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 394 MAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57889999999999999999999999976 45554 55678999999999999999999988653
No 228
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=98.83 E-value=9.4e-08 Score=96.37 Aligned_cols=108 Identities=18% Similarity=0.107 Sum_probs=94.0
Q ss_pred hcCCCCHHHHHHHHHHHHH-----cC------CHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHc-----CCHHHHHH
Q 003891 195 HFNPHCAEACNNLGVIYKD-----RD------NLDKAVECYQMALSIKPN--FSQSLNNLGVVYTVQ-----GKMDAAAE 256 (788)
Q Consensus 195 ~~~p~~~~~~~~la~~~~~-----~g------~~~eA~~~~~~al~~~p~--~~~~~~~la~~~~~~-----g~~~eA~~ 256 (788)
+.+|++.+.++..|.+... .| ...+|...++++++++|+ +..+|..+|.+|... |+.++|.+
T Consensus 146 ~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~ 225 (301)
T 3u64_A 146 RCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHT 225 (301)
T ss_dssp TCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHH
T ss_pred HcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHH
Confidence 4578888888887776643 13 357899999999999999 566999999999995 99999999
Q ss_pred HHHHHHHhCCCC-HHHHHHHHHHHHH-cCCHHHHHHHHHHHHhhCCCC
Q 003891 257 MIEKAIAANPTY-AEAYNNLGVLYRD-AGSISLAIDAYEQCLKIDPDS 302 (788)
Q Consensus 257 ~l~kal~~~p~~-~~~~~~la~~~~~-~g~~~eA~~~~~~al~l~p~~ 302 (788)
+|+++++++|+. ...++.+|..+.. +|++++|.++++++++.+|..
T Consensus 226 ~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~ 273 (301)
T 3u64_A 226 AFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPES 273 (301)
T ss_dssp HHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGG
T ss_pred HHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCC
Confidence 999999999975 9999999999988 599999999999999998874
No 229
>4fzr_A SSFS6; structural genomics, PSI-biology, protein structure initiati enzyme discovery for natural product biosynthesis, natPro; 2.40A {Streptomyces SP} PDB: 4g2t_A*
Probab=98.82 E-value=2e-08 Score=109.92 Aligned_cols=162 Identities=15% Similarity=0.084 Sum_probs=99.1
Q ss_pred CCCCeEEEecCCCC--cC------CHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCc
Q 003891 523 TNGFITFGSFNNLA--KI------TPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLI 594 (788)
Q Consensus 523 ~~~~~~f~~~~~~~--K~------~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~~~~l~~~~~~~gi~~~rv~~~~~~ 594 (788)
++..+++.++++.. |. ....++...+.+... +.++++.+++ ..++.+. .+ +++|.+.+++
T Consensus 225 ~~~~~v~v~~G~~~~~~~~~~~~~~~~~~~~~~~al~~~-~~~~v~~~~~----~~~~~l~------~~-~~~v~~~~~~ 292 (398)
T 4fzr_A 225 RKQPRLCLTFGTRVPLPNTNTIPGGLSLLQALSQELPKL-GFEVVVAVSD----KLAQTLQ------PL-PEGVLAAGQF 292 (398)
T ss_dssp CSSCEEECC----------------CCSHHHHHHHGGGG-TCEEEECCCC------------------C-CTTEEEESCC
T ss_pred CCCCEEEEEccCcccccccccccchHHHHHHHHHHHHhC-CCEEEEEeCC----cchhhhc------cC-CCcEEEeCcC
Confidence 35567777777663 21 233444445555555 4677776654 2222222 23 4899999997
Q ss_pred CCcHHHHHhcccccEeecCCCCCCchhHHHHhhhCCceeecCCCccCccchhHHHhhhCCcccccC---CHHHHHHHHHH
Q 003891 595 LLNHDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIAK---NEDEYVQLALQ 671 (788)
Q Consensus 595 ~~~~~~~~~~~~~Dv~Ld~~~~~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l~~~gl~~~ia~---~~~~y~~~a~~ 671 (788)
+ ..+ .+..||+++. -+|++|++|||++|||+|+++-. ......+..+...|..-++.. |.++..+...+
T Consensus 293 ~-~~~---ll~~ad~~v~---~gG~~t~~Ea~~~G~P~v~~p~~-~~q~~~a~~~~~~g~g~~~~~~~~~~~~l~~ai~~ 364 (398)
T 4fzr_A 293 P-LSA---IMPACDVVVH---HGGHGTTLTCLSEGVPQVSVPVI-AEVWDSARLLHAAGAGVEVPWEQAGVESVLAACAR 364 (398)
T ss_dssp C-HHH---HGGGCSEEEE---CCCHHHHHHHHHTTCCEEECCCS-GGGHHHHHHHHHTTSEEECC-------CHHHHHHH
T ss_pred C-HHH---HHhhCCEEEe---cCCHHHHHHHHHhCCCEEecCCc-hhHHHHHHHHHHcCCEEecCcccCCHHHHHHHHHH
Confidence 5 444 4455999992 36678999999999999998642 122234556677777766643 67889999999
Q ss_pred HhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHH
Q 003891 672 LASDVTALANLRMSLRDLMSKSPVCDGQNFALGLES 707 (788)
Q Consensus 672 l~~d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~ 707 (788)
+.+|++.++++++..++... ....++.++.+|+
T Consensus 365 ll~~~~~~~~~~~~~~~~~~---~~~~~~~~~~l~~ 397 (398)
T 4fzr_A 365 IRDDSSYVGNARRLAAEMAT---LPTPADIVRLIEQ 397 (398)
T ss_dssp HHHCTHHHHHHHHHHHHHTT---SCCHHHHHHHHTC
T ss_pred HHhCHHHHHHHHHHHHHHHc---CCCHHHHHHHHhc
Confidence 99999999998887765432 2467888877764
No 230
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.82 E-value=8.5e-08 Score=87.84 Aligned_cols=109 Identities=22% Similarity=0.319 Sum_probs=57.4
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----cCCHHHHHHH
Q 003891 148 DINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKD----RDNLDKAVEC 223 (788)
Q Consensus 148 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~eA~~~ 223 (788)
++++|+++|+++.+...... . +|.+|...+..++|+++|+++.+. .++.+++++|.+|.. .+++++|+.+
T Consensus 10 d~~~A~~~~~~aa~~g~~~a--~--lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~ 83 (138)
T 1klx_A 10 DLKKAIQYYVKACELNEMFG--C--LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQY 83 (138)
T ss_dssp HHHHHHHHHHHHHHTTCTTH--H--HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHH
T ss_pred CHHHHHHHHHHHHcCCCHhh--h--HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccHHHHHHH
Confidence 45556666666655542222 2 555555555555555555555544 345555555555555 4555555555
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHh
Q 003891 224 YQMALSIKPNFSQSLNNLGVVYTV----QGKMDAAAEMIEKAIAA 264 (788)
Q Consensus 224 ~~~al~~~p~~~~~~~~la~~~~~----~g~~~eA~~~l~kal~~ 264 (788)
|+++.+. .++.+.+++|.+|.. .+++++|+++|+++.+.
T Consensus 84 ~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~ 126 (138)
T 1klx_A 84 YSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL 126 (138)
T ss_dssp HHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred HHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC
Confidence 5555543 345555555555555 45555555555555444
No 231
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=98.81 E-value=7.7e-09 Score=88.35 Aligned_cols=91 Identities=13% Similarity=0.146 Sum_probs=67.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 003891 205 NNLGVIYKDRDNLDKAVECYQMALSIKPNFSQ-SLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAG 283 (788)
Q Consensus 205 ~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~-~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g 283 (788)
+..|.++...|++++|+..|+++++.+|++.. ++..+|.++...|++++|++.|+++++++|++..++.+ +
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------~ 75 (99)
T 2kc7_A 4 LKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------K 75 (99)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------H
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------H
Confidence 45677777777777777777777777777777 77777777777777777777777777777777766543 5
Q ss_pred CHHHHHHHHHHHHhhCCCCh
Q 003891 284 SISLAIDAYEQCLKIDPDSR 303 (788)
Q Consensus 284 ~~~eA~~~~~~al~l~p~~~ 303 (788)
.+.+++..|+++...+|++.
T Consensus 76 ~~~~a~~~~~~~~~~~p~~~ 95 (99)
T 2kc7_A 76 MVMDILNFYNKDMYNQLEHH 95 (99)
T ss_dssp HHHHHHHHHCCTTHHHHCCS
T ss_pred HHHHHHHHHHHHhccCcccc
Confidence 56677777777777777654
No 232
>1v4v_A UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, two domains, homodimer, riken structural genomics/proteomics initiative, RSGI; HET: MSE; 1.80A {Thermus thermophilus} SCOP: c.87.1.3
Probab=98.80 E-value=5.1e-08 Score=105.68 Aligned_cols=144 Identities=16% Similarity=0.141 Sum_probs=103.6
Q ss_pred CCCeEEEecCCC--CcCCHHHHHHHHHHHhHcCCcEEEEe-cCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHH
Q 003891 524 NGFITFGSFNNL--AKITPKVLQVWARILCAVPNSRLVVK-CKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDH 600 (788)
Q Consensus 524 ~~~~~f~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~l~-~~~~~~~~~~~~l~~~~~~~gi~~~rv~~~~~~~~~~~~ 600 (788)
++.++++++++. .|..+.+++++.++.+..|+.+|++. |.+ +..++.+++.+. . .++|.|+|.++ ..+.
T Consensus 197 ~~~~vl~~~gr~~~~k~~~~ll~a~~~l~~~~~~~~lv~~~g~~---~~~~~~l~~~~~---~-~~~v~~~g~~g-~~~~ 268 (376)
T 1v4v_A 197 EGPYVTVTMHRRENWPLLSDLAQALKRVAEAFPHLTFVYPVHLN---PVVREAVFPVLK---G-VRNFVLLDPLE-YGSM 268 (376)
T ss_dssp SSCEEEECCCCGGGGGGHHHHHHHHHHHHHHCTTSEEEEECCSC---HHHHHHHHHHHT---T-CTTEEEECCCC-HHHH
T ss_pred CCCEEEEEeCcccchHHHHHHHHHHHHHHhhCCCeEEEEECCCC---HHHHHHHHHHhc---c-CCCEEEECCCC-HHHH
Confidence 456677778865 45678899999999888999998886 533 235666665542 2 36999998876 4588
Q ss_pred HHhcccccEeecCCCCCCchhHHHHhhhCCceeecCCCccCccchhHHHhhhCCcccccCCHHHHHHHHHHHhcCHHHHH
Q 003891 601 MQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIAKNEDEYVQLALQLASDVTALA 680 (788)
Q Consensus 601 ~~~~~~~Dv~Ld~~~~~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l~~~gl~~~ia~~~~~y~~~a~~l~~d~~~~~ 680 (788)
...|+.||+++-++ ||. ++|||++|+|||+.... .+... + ...|..-++..|.++..+...++.+|++.++
T Consensus 269 ~~~~~~ad~~v~~S---~g~-~lEA~a~G~PvI~~~~~--~~~~~--~-~~~g~g~lv~~d~~~la~~i~~ll~d~~~~~ 339 (376)
T 1v4v_A 269 AALMRASLLLVTDS---GGL-QEEGAALGVPVVVLRNV--TERPE--G-LKAGILKLAGTDPEGVYRVVKGLLENPEELS 339 (376)
T ss_dssp HHHHHTEEEEEESC---HHH-HHHHHHTTCCEEECSSS--CSCHH--H-HHHTSEEECCSCHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHhCcEEEECC---cCH-HHHHHHcCCCEEeccCC--Ccchh--h-hcCCceEECCCCHHHHHHHHHHHHhChHhhh
Confidence 88999999998765 444 78999999999975311 11111 1 2234333343799999999999999998888
Q ss_pred HHHH
Q 003891 681 NLRM 684 (788)
Q Consensus 681 ~~r~ 684 (788)
+|++
T Consensus 340 ~~~~ 343 (376)
T 1v4v_A 340 RMRK 343 (376)
T ss_dssp HHHH
T ss_pred hhcc
Confidence 8875
No 233
>3rsc_A CALG2; TDP, enediyne, structural genomics, PSI-2, protein structure initiative, center for eukaryotic structural genomics; HET: TYD C0T; 2.19A {Micromonospora echinospora} PDB: 3iaa_A*
Probab=98.80 E-value=8.2e-07 Score=97.56 Aligned_cols=167 Identities=15% Similarity=0.140 Sum_probs=116.4
Q ss_pred CCCCCeEEEecCCCCcCCHHHHHHHHHHHhHcCCcEEEE-ecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHH
Q 003891 522 LTNGFITFGSFNNLAKITPKVLQVWARILCAVPNSRLVV-KCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDH 600 (788)
Q Consensus 522 ~~~~~~~f~~~~~~~K~~~~~~~~~~~il~~~p~~~l~l-~~~~~~~~~~~~~l~~~~~~~gi~~~rv~~~~~~~~~~~~ 600 (788)
.++..+++.++++..+..++.+....+.+...| .++++ .|.+.. .+.+. .+ +++|.+.++++ ..+
T Consensus 244 ~~~~~~v~v~~Gs~~~~~~~~~~~~~~al~~~~-~~~v~~~g~~~~----~~~l~------~~-~~~v~~~~~~~-~~~- 309 (415)
T 3rsc_A 244 ADDLPVVLVSLGTTFNDRPGFFRDCARAFDGQP-WHVVMTLGGQVD----PAALG------DL-PPNVEAHRWVP-HVK- 309 (415)
T ss_dssp SSCCCEEEEECTTTSCCCHHHHHHHHHHHTTSS-CEEEEECTTTSC----GGGGC------CC-CTTEEEESCCC-HHH-
T ss_pred CCCCCEEEEECCCCCCChHHHHHHHHHHHhcCC-cEEEEEeCCCCC----hHHhc------CC-CCcEEEEecCC-HHH-
Confidence 356678899999887777777887778888887 55555 443311 11111 23 47899999987 334
Q ss_pred HHhcccccEeecCCCCCCchhHHHHhhhCCceeecCCCccCccchhHHHhhhCCcccccC---CHHHHHHHHHHHhcCHH
Q 003891 601 MQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIAK---NEDEYVQLALQLASDVT 677 (788)
Q Consensus 601 ~~~~~~~Dv~Ld~~~~~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l~~~gl~~~ia~---~~~~y~~~a~~l~~d~~ 677 (788)
.+..||+++.. +|..|++|||++|+|+|+++- .......+..+...|..-.+.. +.++..+...++.+|++
T Consensus 310 --ll~~ad~~v~~---~G~~t~~Ea~~~G~P~v~~p~-~~~q~~~a~~l~~~g~g~~~~~~~~~~~~l~~~i~~ll~~~~ 383 (415)
T 3rsc_A 310 --VLEQATVCVTH---GGMGTLMEALYWGRPLVVVPQ-SFDVQPMARRVDQLGLGAVLPGEKADGDTLLAAVGAVAADPA 383 (415)
T ss_dssp --HHHHEEEEEES---CCHHHHHHHHHTTCCEEECCC-SGGGHHHHHHHHHHTCEEECCGGGCCHHHHHHHHHHHHTCHH
T ss_pred --HHhhCCEEEEC---CcHHHHHHHHHhCCCEEEeCC-cchHHHHHHHHHHcCCEEEcccCCCCHHHHHHHHHHHHcCHH
Confidence 44559999832 556789999999999999864 2223345667777788765543 78999999999999999
Q ss_pred HHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHH
Q 003891 678 ALANLRMSLRDLMSKSPVCDGQNFALGLESTYRN 711 (788)
Q Consensus 678 ~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~~ 711 (788)
.++++++..+... .. ...++.++.+|+.+++
T Consensus 384 ~~~~~~~~~~~~~-~~--~~~~~~~~~i~~~~~~ 414 (415)
T 3rsc_A 384 LLARVEAMRGHVR-RA--GGAARAADAVEAYLAR 414 (415)
T ss_dssp HHHHHHHHHHHHH-HS--CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-hc--CHHHHHHHHHHHHhhc
Confidence 8888877555432 22 4567788888877653
No 234
>3ia7_A CALG4; glycosysltransferase, calicheamicin, enediyne, transf; 1.91A {Micromonospora echinospora}
Probab=98.80 E-value=4.3e-07 Score=99.20 Aligned_cols=169 Identities=15% Similarity=0.120 Sum_probs=117.9
Q ss_pred CCCCCeEEEecCCCCcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHHH
Q 003891 522 LTNGFITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHM 601 (788)
Q Consensus 522 ~~~~~~~f~~~~~~~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~~~~l~~~~~~~gi~~~rv~~~~~~~~~~~~~ 601 (788)
.++..+++.++++..+..++.+....+.+...|--.++..|.+.. ++.+. .+ +++|.+.++++ ..
T Consensus 228 ~~~~~~v~v~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~----~~~~~------~~-~~~v~~~~~~~-~~--- 292 (402)
T 3ia7_A 228 RPDAPVLLVSLGNQFNEHPEFFRACAQAFADTPWHVVMAIGGFLD----PAVLG------PL-PPNVEAHQWIP-FH--- 292 (402)
T ss_dssp STTCCEEEEECCSCSSCCHHHHHHHHHHHTTSSCEEEEECCTTSC----GGGGC------SC-CTTEEEESCCC-HH---
T ss_pred CCCCCEEEEECCCCCcchHHHHHHHHHHHhcCCcEEEEEeCCcCC----hhhhC------CC-CCcEEEecCCC-HH---
Confidence 356678888999887777777877777787777444444454311 11111 13 47899999986 23
Q ss_pred HhcccccEeecCCCCCCchhHHHHhhhCCceeecCCCccCccchhHHHhhhCCcccccC---CHHHHHHHHHHHhcCHHH
Q 003891 602 QAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIAK---NEDEYVQLALQLASDVTA 678 (788)
Q Consensus 602 ~~~~~~Dv~Ld~~~~~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l~~~gl~~~ia~---~~~~y~~~a~~l~~d~~~ 678 (788)
..+..||+++.. +|+.|++|||++|+|+|+++.........+..+...|..-.+.. |.++..+...+|.+|++.
T Consensus 293 ~ll~~ad~~v~~---~G~~t~~Ea~~~G~P~v~~p~~~~~q~~~a~~~~~~g~g~~~~~~~~~~~~l~~~~~~ll~~~~~ 369 (402)
T 3ia7_A 293 SVLAHARACLTH---GTTGAVLEAFAAGVPLVLVPHFATEAAPSAERVIELGLGSVLRPDQLEPASIREAVERLAADSAV 369 (402)
T ss_dssp HHHTTEEEEEEC---CCHHHHHHHHHTTCCEEECGGGCGGGHHHHHHHHHTTSEEECCGGGCSHHHHHHHHHHHHHCHHH
T ss_pred HHHhhCCEEEEC---CCHHHHHHHHHhCCCEEEeCCCcccHHHHHHHHHHcCCEEEccCCCCCHHHHHHHHHHHHcCHHH
Confidence 566669999832 56678999999999999876422233445667777788766644 789999999999999998
Q ss_pred HHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHH
Q 003891 679 LANLRMSLRDLMSKSPVCDGQNFALGLESTYRN 711 (788)
Q Consensus 679 ~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~~ 711 (788)
++++++..++. .. ....++.++.+|+.++.
T Consensus 370 ~~~~~~~~~~~-~~--~~~~~~~~~~i~~~~~~ 399 (402)
T 3ia7_A 370 RERVRRMQRDI-LS--SGGPARAADEVEAYLGR 399 (402)
T ss_dssp HHHHHHHHHHH-HT--SCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-hh--CChHHHHHHHHHHHHhh
Confidence 88887765543 22 24677888888887653
No 235
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.78 E-value=2.7e-08 Score=110.98 Aligned_cols=129 Identities=12% Similarity=-0.023 Sum_probs=108.8
Q ss_pred HHHhhhhhhhcCCHHHHHHHHHHHHHh-----CCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHhc--------CCC
Q 003891 136 LTDLGTKVKLEGDINQGVAYYKKALYY-----NWHY---ADAMYNLGVAYGEMLKFDMAIVFYELAFHF--------NPH 199 (788)
Q Consensus 136 l~~lg~~~~~~g~~~~A~~~~~~al~~-----~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~ 199 (788)
....+..+..+|++++|+..+++++++ .+++ ..++.++|.+|..+|+|++|+.++++++++ +|+
T Consensus 312 ~le~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~ 391 (490)
T 3n71_A 312 TLEKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQ 391 (490)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHH
Confidence 334445567899999999999999976 3444 457899999999999999999999999976 344
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----CCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 003891 200 CAEACNNLGVIYKDRDNLDKAVECYQMALSI-----KPNFS---QSLNNLGVVYTVQGKMDAAAEMIEKAIAA 264 (788)
Q Consensus 200 ~~~~~~~la~~~~~~g~~~eA~~~~~~al~~-----~p~~~---~~~~~la~~~~~~g~~~eA~~~l~kal~~ 264 (788)
....++++|.+|..+|++++|+.+|++|+++ .|+++ +...+++.++.+++.+++|...|+++.+.
T Consensus 392 ~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 392 LGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678999999999999999999999999986 45554 46778999999999999999999998654
No 236
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.77 E-value=1.7e-08 Score=86.78 Aligned_cols=72 Identities=22% Similarity=0.367 Sum_probs=52.8
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 003891 231 KPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDS 302 (788)
Q Consensus 231 ~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~ 302 (788)
+|+++.+++.+|.++...|++++|+..|+++++++|+++.+++.+|.+|..+|++++|++.|++++++.|++
T Consensus 3 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~ 74 (100)
T 3ma5_A 3 DPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREE 74 (100)
T ss_dssp --CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcC
Confidence 567777777777777777777777777777777777777777777777777777777777777777765543
No 237
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.77 E-value=1e-07 Score=87.37 Aligned_cols=111 Identities=19% Similarity=0.213 Sum_probs=101.3
Q ss_pred CChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----cCCHHHHHH
Q 003891 181 LKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTV----QGKMDAAAE 256 (788)
Q Consensus 181 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~eA~~ 256 (788)
+++++|+++|+++.+....... +|.+|...+..++|+++|+++.+. .++.+++++|.+|.. .+++++|++
T Consensus 9 ~d~~~A~~~~~~aa~~g~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~ 82 (138)
T 1klx_A 9 KDLKKAIQYYVKACELNEMFGC----LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQ 82 (138)
T ss_dssp HHHHHHHHHHHHHHHTTCTTHH----HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHH
T ss_pred cCHHHHHHHHHHHHcCCCHhhh----HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccHHHHHH
Confidence 4789999999999988754443 999999999999999999999986 789999999999999 899999999
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhC
Q 003891 257 MIEKAIAANPTYAEAYNNLGVLYRD----AGSISLAIDAYEQCLKID 299 (788)
Q Consensus 257 ~l~kal~~~p~~~~~~~~la~~~~~----~g~~~eA~~~~~~al~l~ 299 (788)
+|+++.+. .++.+.++||.+|.. .+++++|+++|+++.+..
T Consensus 83 ~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 83 YYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 99999987 679999999999999 999999999999999874
No 238
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=98.75 E-value=1.5e-08 Score=86.50 Aligned_cols=90 Identities=20% Similarity=0.256 Sum_probs=77.8
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC
Q 003891 28 TDLGTSLKLAGNTQDGIQKYYEALKIDPHYAP-AYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRG 106 (788)
Q Consensus 28 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~-~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g 106 (788)
+.+|..+...|++++|+..|+++++.+|++.. +++.+|.++...|++++|+..|+++++.+|++..++.. +
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------~ 75 (99)
T 2kc7_A 4 LKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------K 75 (99)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------H
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------H
Confidence 45678888899999999999999999999999 99999999999999999999999999999998887744 5
Q ss_pred CHHHHHHHHHHHHhhCCCc
Q 003891 107 DLESAIACYERCLAVSPNF 125 (788)
Q Consensus 107 ~~~~A~~~~~~al~~~p~~ 125 (788)
.+.+++..|++++..+|++
T Consensus 76 ~~~~a~~~~~~~~~~~p~~ 94 (99)
T 2kc7_A 76 MVMDILNFYNKDMYNQLEH 94 (99)
T ss_dssp HHHHHHHHHCCTTHHHHCC
T ss_pred HHHHHHHHHHHHhccCccc
Confidence 6777888888877776654
No 239
>3s2u_A UDP-N-acetylglucosamine--N-acetylmuramyl-(pentape pyrophosphoryl-undecaprenol N-acetylglucosamine...; N-acetylglucosaminyl transferase; HET: UD1; 2.23A {Pseudomonas aeruginosa}
Probab=98.74 E-value=3.1e-08 Score=106.92 Aligned_cols=158 Identities=14% Similarity=0.156 Sum_probs=99.5
Q ss_pred CcCCHHHHHHHHHHHhHcCCcEEE-EecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHHHHhcccccEeecCC
Q 003891 536 AKITPKVLQVWARILCAVPNSRLV-VKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTF 614 (788)
Q Consensus 536 ~K~~~~~~~~~~~il~~~p~~~l~-l~~~~~~~~~~~~~l~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~~Dv~Ld~~ 614 (788)
.+++..+.+++.++.... +..++ +.|.+ ..+.+.+.....++. +.+.+.+++ .-..|..||+++..
T Consensus 193 ~~~~~~~~~al~~l~~~~-~~~vi~~~G~~-----~~~~~~~~~~~~~~~---~~v~~f~~d---m~~~l~~aDlvI~r- 259 (365)
T 3s2u_A 193 EPLNKLLPEALAQVPLEI-RPAIRHQAGRQ-----HAEITAERYRTVAVE---ADVAPFISD---MAAAYAWADLVICR- 259 (365)
T ss_dssp SHHHHHHHHHHHTSCTTT-CCEEEEECCTT-----THHHHHHHHHHTTCC---CEEESCCSC---HHHHHHHCSEEEEC-
T ss_pred cccchhhHHHHHhccccc-ceEEEEecCcc-----ccccccceecccccc---cccccchhh---hhhhhccceEEEec-
Confidence 444444444444433222 23343 33332 234556666777664 455677653 44555669999932
Q ss_pred CCCCchhHHHHhhhCCceeecCCCcc---CccchhHHHhhhCCcccccC---CHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 003891 615 PYAGTTTTCESLYMGVPCVTMAGSVH---AHNVGVSLLTKVGLKHLIAK---NEDEYVQLALQLASDVTALANLRMSLRD 688 (788)
Q Consensus 615 ~~~g~~t~~eal~~GvPvvt~~g~~~---~~r~~~~~l~~~gl~~~ia~---~~~~y~~~a~~l~~d~~~~~~~r~~~~~ 688 (788)
+|++|++|++++|+|+|..+-... .....|..|...|...+|.. |.++..+...+|.+|++.+++|++++++
T Consensus 260 --aG~~Tv~E~~a~G~P~Ilip~p~~~~~~Q~~NA~~l~~~G~a~~l~~~~~~~~~L~~~i~~ll~d~~~~~~m~~~a~~ 337 (365)
T 3s2u_A 260 --AGALTVSELTAAGLPAFLVPLPHAIDDHQTRNAEFLVRSGAGRLLPQKSTGAAELAAQLSEVLMHPETLRSMADQARS 337 (365)
T ss_dssp --CCHHHHHHHHHHTCCEEECC-----CCHHHHHHHHHHTTTSEEECCTTTCCHHHHHHHHHHHHHCTHHHHHHHHHHHH
T ss_pred --CCcchHHHHHHhCCCeEEeccCCCCCcHHHHHHHHHHHCCCEEEeecCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHh
Confidence 688999999999999887653221 13344677888888777653 5788999999999999999999999886
Q ss_pred HhhcCCCCChHHHHHHHHHHHHH
Q 003891 689 LMSKSPVCDGQNFALGLESTYRN 711 (788)
Q Consensus 689 ~~~~~~~~~~~~~~~~~e~~~~~ 711 (788)
.. .....++.++.+|++-+.
T Consensus 338 ~~---~~~aa~~ia~~i~~larG 357 (365)
T 3s2u_A 338 LA---KPEATRTVVDACLEVARG 357 (365)
T ss_dssp TC---CTTHHHHHHHHHHHHC--
T ss_pred cC---CccHHHHHHHHHHHHHcc
Confidence 52 222345566666655544
No 240
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.73 E-value=6.5e-08 Score=83.04 Aligned_cols=72 Identities=22% Similarity=0.340 Sum_probs=66.0
Q ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCC
Q 003891 53 IDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPN 124 (788)
Q Consensus 53 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 124 (788)
.+|+++.+++.+|.++...|++++|+..|+++++.+|++..+++.+|.+|...|++++|++.|++++++.|.
T Consensus 2 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~ 73 (100)
T 3ma5_A 2 EDPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVARE 73 (100)
T ss_dssp ---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred CCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhc
Confidence 478999999999999999999999999999999999999999999999999999999999999999988654
No 241
>3oti_A CALG3; calicheamicin, TDP, structural genomics, PSI-2, protein STRU initiative, center for eukaryotic structural genomics, CESG fold; HET: TYD C0T; 1.60A {Micromonospora echinospora} PDB: 3d0q_A* 3d0r_A*
Probab=98.71 E-value=4.8e-07 Score=98.88 Aligned_cols=160 Identities=9% Similarity=0.027 Sum_probs=104.2
Q ss_pred CCCCeEEEecCCCCcC--CHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHH
Q 003891 523 TNGFITFGSFNNLAKI--TPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDH 600 (788)
Q Consensus 523 ~~~~~~f~~~~~~~K~--~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~~~~l~~~~~~~gi~~~rv~~~~~~~~~~~~ 600 (788)
++..+++.++++.... ....+....+.+... +.++++++++.. ++.+. ++ +++|.+.++++ ..+.
T Consensus 230 ~~~~~v~v~~G~~~~~~~~~~~~~~~~~~l~~~-~~~~v~~~g~~~----~~~l~------~~-~~~v~~~~~~~-~~~l 296 (398)
T 3oti_A 230 PARPEVAITMGTIELQAFGIGAVEPIIAAAGEV-DADFVLALGDLD----ISPLG------TL-PRNVRAVGWTP-LHTL 296 (398)
T ss_dssp CSSCEEEECCTTTHHHHHCGGGHHHHHHHHHTS-SSEEEEECTTSC----CGGGC------SC-CTTEEEESSCC-HHHH
T ss_pred CCCCEEEEEcCCCccccCcHHHHHHHHHHHHcC-CCEEEEEECCcC----hhhhc------cC-CCcEEEEccCC-HHHH
Confidence 4567888888887321 334444444555555 567777765522 11111 33 47899999984 5555
Q ss_pred HHhcccccEeecCCCCCCchhHHHHhhhCCceeecCCCccCccchh--HHHhhhCCcccccC---CHHHHHHHHHHHhcC
Q 003891 601 MQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGV--SLLTKVGLKHLIAK---NEDEYVQLALQLASD 675 (788)
Q Consensus 601 ~~~~~~~Dv~Ld~~~~~g~~t~~eal~~GvPvvt~~g~~~~~r~~~--~~l~~~gl~~~ia~---~~~~y~~~a~~l~~d 675 (788)
+. .||+|+. -+|+.|++|||++|||+|+++-.. .....+ ..+...|..-++.. +.+... ++.+|
T Consensus 297 l~---~ad~~v~---~~G~~t~~Eal~~G~P~v~~p~~~-dq~~~a~~~~~~~~g~g~~~~~~~~~~~~l~----~ll~~ 365 (398)
T 3oti_A 297 LR---TCTAVVH---HGGGGTVMTAIDAGIPQLLAPDPR-DQFQHTAREAVSRRGIGLVSTSDKVDADLLR----RLIGD 365 (398)
T ss_dssp HT---TCSEEEE---CCCHHHHHHHHHHTCCEEECCCTT-CCSSCTTHHHHHHHTSEEECCGGGCCHHHHH----HHHHC
T ss_pred Hh---hCCEEEE---CCCHHHHHHHHHhCCCEEEcCCCc-hhHHHHHHHHHHHCCCEEeeCCCCCCHHHHH----HHHcC
Confidence 54 4999992 266789999999999999976421 122334 66777787765543 334333 88899
Q ss_pred HHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHH
Q 003891 676 VTALANLRMSLRDLMSKSPVCDGQNFALGLESTY 709 (788)
Q Consensus 676 ~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~ 709 (788)
++.++++++..++... . ...+..+..+|+..
T Consensus 366 ~~~~~~~~~~~~~~~~-~--~~~~~~~~~l~~l~ 396 (398)
T 3oti_A 366 ESLRTAAREVREEMVA-L--PTPAETVRRIVERI 396 (398)
T ss_dssp HHHHHHHHHHHHHHHT-S--CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh-C--CCHHHHHHHHHHHh
Confidence 9999998877765433 2 46788888888764
No 242
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=98.67 E-value=5.6e-07 Score=90.76 Aligned_cols=183 Identities=11% Similarity=-0.006 Sum_probs=113.4
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC---------------------CHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 003891 42 DGIQKYYEALKIDPHYAPAYYNLGVVYSELM---------------------QYDTALGCYEKAALERPMYAEAYCNMGV 100 (788)
Q Consensus 42 ~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g---------------------~~~~A~~~~~kal~~~p~~~~~~~~la~ 100 (788)
-.+..++-.+..+|++...+...|..|..-. ++..|.++|.++.+. ...+.
T Consensus 50 ~~Lk~~e~Ll~~~P~~~~Ll~~~a~ly~~Ya~afV~~~a~~~~~~~~~~~~~~~~RA~~Ly~ra~~y--------~~raL 121 (301)
T 3u64_A 50 LVLKVYEALHLQNPAHRGLSLAVGRLYIMYANAFVQTPAQYLPEDEFEAQNEAYSRARKLYLRGARY--------ALSSL 121 (301)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHTHHHHHTSCGGGHHHHHHHHHHHHHHHHHHHHH--------HHHHH
T ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHhcCchhhcchhhHhhhhhhHHHHHHHHHHHHHH--------HHHHH
Confidence 4566777788889999777666665554321 233455555554331 11111
Q ss_pred HHHHCCCHHHHHH-----HHHH-HHhhCCCcHHHHHHHHHHHHHhhhh----hhhcCCHHHHHHHHHHHHHhCCC--CHH
Q 003891 101 IYKNRGDLESAIA-----CYER-CLAVSPNFEIAKNNMAIALTDLGTK----VKLEGDINQGVAYYKKALYYNWH--YAD 168 (788)
Q Consensus 101 ~~~~~g~~~~A~~-----~~~~-al~~~p~~~~~~~~la~~l~~lg~~----~~~~g~~~~A~~~~~~al~~~p~--~~~ 168 (788)
+ .....+.+++. -+.+ .-+.+|++.+.++..+.++...... ....+...+|...++++++++|+ +..
T Consensus 122 ~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~Gs 200 (301)
T 3u64_A 122 E-TAYPGFTREVFSGDEQRLHKVLSRCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQEGA 200 (301)
T ss_dssp H-HHSTTHHHHHTSSCHHHHHHHHTTCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHHHH
T ss_pred H-HhCccHHHHHHhcchhhHHHHHHHcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcccCH
Confidence 1 11122222222 1222 3345677777777766665443221 22334567788888888888888 455
Q ss_pred HHHHHHHHHHHc-----CChHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHc-CCHHHHHHHHHHHHhhCCC
Q 003891 169 AMYNLGVAYGEM-----LKFDMAIVFYELAFHFNPHC-AEACNNLGVIYKDR-DNLDKAVECYQMALSIKPN 233 (788)
Q Consensus 169 ~~~~la~~~~~~-----g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~-g~~~eA~~~~~~al~~~p~ 233 (788)
++..+|.+|... |+.++|.++|+++++++|+. ...++.+|..++.. |++++|..+++++++..|.
T Consensus 201 A~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 201 VWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGG
T ss_pred HHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCC
Confidence 788888888774 78888888888888888864 77777788777774 7788888888888776654
No 243
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=98.66 E-value=6.2e-07 Score=94.37 Aligned_cols=57 Identities=12% Similarity=0.019 Sum_probs=30.0
Q ss_pred HHHHcCCCChhhHHHHHHHHHHHHHHHHHcC---ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 003891 8 KALSADPSYKPAAECLAIVLTDLGTSLKLAG---NTQDGIQKYYEALKIDPHYAPAYYNLGVVYS 69 (788)
Q Consensus 8 kaL~~~P~~~~a~~~la~~l~~lg~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 69 (788)
++...-|.+.+++.. +..|..+...+ +..+|+.+|+++++++|+++.++..++.+|.
T Consensus 185 r~~~~~p~~~~Aydl-----~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~ 244 (372)
T 3ly7_A 185 TLQKILPHRGALLTN-----FYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDI 244 (372)
T ss_dssp HHHHHSCSSGGGHHH-----HHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHhccCCCCHHHHHH-----HHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 344455555555442 22333333332 2356666666666666666666666665554
No 244
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=98.62 E-value=6.1e-07 Score=94.44 Aligned_cols=146 Identities=18% Similarity=0.125 Sum_probs=111.6
Q ss_pred HHHHhCCCCHHHH--HHHHHHHHHcCC---hHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC----CHHHHHH----HH
Q 003891 158 KALYYNWHYADAM--YNLGVAYGEMLK---FDMAIVFYELAFHFNPHCAEACNNLGVIYKDRD----NLDKAVE----CY 224 (788)
Q Consensus 158 ~al~~~p~~~~~~--~~la~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g----~~~eA~~----~~ 224 (788)
++....|.+.++| +..|..+...++ ..+|+.+|+++++++|++..++..++.+|.... ....... .+
T Consensus 185 r~~~~~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~ 264 (372)
T 3ly7_A 185 TLQKILPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEI 264 (372)
T ss_dssp HHHHHSCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHH
T ss_pred HHhccCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHH
Confidence 3444566665543 445565655544 578999999999999999998888887775311 1111111 22
Q ss_pred HH--HHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 003891 225 QM--ALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDS 302 (788)
Q Consensus 225 ~~--al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~ 302 (788)
+. ++...|.++.++..++..+...|++++|+..+++++.++|+ ..++..+|.++...|++++|++.|++|+.++|..
T Consensus 265 ~a~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~ 343 (372)
T 3ly7_A 265 DNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGA 343 (372)
T ss_dssp HHHHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSH
T ss_pred HHHHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence 21 22457899999999999999999999999999999999975 7788999999999999999999999999999987
Q ss_pred hh
Q 003891 303 RN 304 (788)
Q Consensus 303 ~~ 304 (788)
+.
T Consensus 344 ~t 345 (372)
T 3ly7_A 344 NT 345 (372)
T ss_dssp HH
T ss_pred Ch
Confidence 53
No 245
>3nb0_A Glycogen [starch] synthase isoform 2; glycogen synthase, glucose-6-phosphate, yeast, allosteric AC transferase; HET: G6P; 2.41A {Saccharomyces cerevisiae} PDB: 3rt1_A* 3nch_A 3naz_A 3o3c_A* 3rsz_A*
Probab=98.61 E-value=1.1e-07 Score=106.91 Aligned_cols=135 Identities=21% Similarity=0.157 Sum_probs=91.1
Q ss_pred HHHHHHHHHcCCCC---Cc--EEEcCCcCCcH------HHHHhcccccEeecCCCC-CCchhHHHHhhhCCceeecCCCc
Q 003891 572 HRFLSTLEQLGLES---LR--VDLLPLILLNH------DHMQAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSV 639 (788)
Q Consensus 572 ~~l~~~~~~~gi~~---~r--v~~~~~~~~~~------~~~~~~~~~Dv~Ld~~~~-~g~~t~~eal~~GvPvvt~~g~~ 639 (788)
+.+...+++.|+.. +| |+|.|.-.+.. ++...|+.||+|+-|+-| +.|.|.+|||+||+||||
T Consensus 473 D~Il~~~r~l~L~N~~~drVKVIf~P~~L~~~d~lf~~d~~~~~~~advfV~PS~~EgfGl~~LEAmA~G~PvI~----- 547 (725)
T 3nb0_A 473 DLILNKIRQVQLFNSPSDRVKMIFHPEFLNANNPILGLDYDEFVRGCHLGVFPSYYEPWGYTPAECTVMGVPSIT----- 547 (725)
T ss_dssp CHHHHHHHHHTCCCCTTCSEEEEECCSCCCTTCSSSCCCHHHHHHHCSEEECCCSSBSSCHHHHHHHHTTCCEEE-----
T ss_pred cHHHHHHHhcCCCCCcCCceeEEEeccccCCCCccchhHHHHHHhhceEEEeccccCCCCHHHHHHHHcCCCEEE-----
Confidence 34555666667652 23 56776544333 577888899999999988 779999999999999998
Q ss_pred cCccchhH--HHhh-hC-----Ccc-ccc----CCHHHHHHHHHH----Hh-cCHHHHHHHHHHHHHHhhcCCCCChHHH
Q 003891 640 HAHNVGVS--LLTK-VG-----LKH-LIA----KNEDEYVQLALQ----LA-SDVTALANLRMSLRDLMSKSPVCDGQNF 701 (788)
Q Consensus 640 ~~~r~~~~--~l~~-~g-----l~~-~ia----~~~~~y~~~a~~----l~-~d~~~~~~~r~~~~~~~~~~~~~~~~~~ 701 (788)
+++++- ++.. .+ -.+ +|. .+.++.++...+ +. .|+..+..+|++.++.. ..|+++.+
T Consensus 548 --s~~gG~~d~V~dg~~~~~~~~tG~lV~~rd~~d~ee~aeaLa~aL~~f~~~d~~~r~~mr~~ar~~A---~~FSWe~i 622 (725)
T 3nb0_A 548 --TNVSGFGSYMEDLIETNQAKDYGIYIVDRRFKAPDESVEQLVDYMEEFVKKTRRQRINQRNATEALS---DLLDWKRM 622 (725)
T ss_dssp --ETTBHHHHHHHTTSCHHHHHHTTEEEECCSSSCHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHGG---GGGBHHHH
T ss_pred --eCCCChhhhhhccccccCCCCceEEEeCCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH---HhCCHHHH
Confidence 555531 1111 11 123 331 245555444333 33 37888889998776443 35999999
Q ss_pred HHHHHHHHHHHHHHH
Q 003891 702 ALGLESTYRNMWHRY 716 (788)
Q Consensus 702 ~~~~e~~~~~~~~~~ 716 (788)
++.++++|+.+..+.
T Consensus 623 A~~Yl~~Ye~aL~~~ 637 (725)
T 3nb0_A 623 GLEYVKARQLALRRG 637 (725)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhc
Confidence 999999999998754
No 246
>2o6l_A UDP-glucuronosyltransferase 2B7; drug metabolism, rossman, MAD, enzyme, nucleotide binding, sugar,UDP-glucuronosyltransferase, UGT; 1.80A {Homo sapiens}
Probab=98.55 E-value=1.4e-06 Score=82.78 Aligned_cols=138 Identities=14% Similarity=0.172 Sum_probs=92.9
Q ss_pred CCCeEEEecCCCC-cCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHHHH
Q 003891 524 NGFITFGSFNNLA-KITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQ 602 (788)
Q Consensus 524 ~~~~~f~~~~~~~-K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~~~~l~~~~~~~gi~~~rv~~~~~~~~~~~~~~ 602 (788)
+..++|.++++.. ......+....+.+...| .++++++++... .++. ++|.|.++++ ..+.+.
T Consensus 20 ~~~~vlv~~Gs~~~~~~~~~~~~~~~al~~~~-~~~~~~~g~~~~-------------~~~~-~~v~~~~~~~-~~~~l~ 83 (170)
T 2o6l_A 20 ENGVVVFSLGSMVSNMTEERANVIASALAQIP-QKVLWRFDGNKP-------------DTLG-LNTRLYKWIP-QNDLLG 83 (170)
T ss_dssp TTCEEEEECCSCCTTCCHHHHHHHHHHHTTSS-SEEEEECCSSCC-------------TTCC-TTEEEESSCC-HHHHHT
T ss_pred CCCEEEEECCCCcccCCHHHHHHHHHHHHhCC-CeEEEEECCcCc-------------ccCC-CcEEEecCCC-HHHHhc
Confidence 3456788888774 445556666666666666 455554443211 1343 7899999987 455554
Q ss_pred hcccccEeecCCCCCCchhHHHHhhhCCceeecCCCccCccchhHHHhhhCCcccccC---CHHHHHHHHHHHhcCHHHH
Q 003891 603 AYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIAK---NEDEYVQLALQLASDVTAL 679 (788)
Q Consensus 603 ~~~~~Dv~Ld~~~~~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l~~~gl~~~ia~---~~~~y~~~a~~l~~d~~~~ 679 (788)
+..||+++. .+|++|++|||++|+|+|+.+-. ......+..+...|..-++.. +.++..+...++..|++.+
T Consensus 84 -~~~ad~~I~---~~G~~t~~Ea~~~G~P~i~~p~~-~~Q~~na~~l~~~g~g~~~~~~~~~~~~l~~~i~~ll~~~~~~ 158 (170)
T 2o6l_A 84 -HPKTRAFIT---HGGANGIYEAIYHGIPMVGIPLF-ADQPDNIAHMKARGAAVRVDFNTMSSTDLLNALKRVINDPSYK 158 (170)
T ss_dssp -STTEEEEEE---CCCHHHHHHHHHHTCCEEECCCS-TTHHHHHHHHHTTTSEEECCTTTCCHHHHHHHHHHHHHCHHHH
T ss_pred -CCCcCEEEE---cCCccHHHHHHHcCCCEEeccch-hhHHHHHHHHHHcCCeEEeccccCCHHHHHHHHHHHHcCHHHH
Confidence 488999994 37889999999999999998742 112234556666777655432 7889999999999998644
Q ss_pred HHH
Q 003891 680 ANL 682 (788)
Q Consensus 680 ~~~ 682 (788)
+++
T Consensus 159 ~~a 161 (170)
T 2o6l_A 159 ENV 161 (170)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 247
>2iyf_A OLED, oleandomycin glycosyltransferase; antibiotic resistance, glycosylation, enzyme, macrolide, carbohydrate; HET: ERY UDP; 1.7A {Streptomyces antibioticus}
Probab=98.54 E-value=2.8e-07 Score=101.83 Aligned_cols=170 Identities=15% Similarity=0.158 Sum_probs=113.2
Q ss_pred CCCCeEEEecCCCCcCCHHHHHHHHHHHhHcCCcEE-EEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHHH
Q 003891 523 TNGFITFGSFNNLAKITPKVLQVWARILCAVPNSRL-VVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHM 601 (788)
Q Consensus 523 ~~~~~~f~~~~~~~K~~~~~~~~~~~il~~~p~~~l-~l~~~~~~~~~~~~~l~~~~~~~gi~~~rv~~~~~~~~~~~~~ 601 (788)
+++.++|.++++..+...+.+....+.+...|+.++ |++|.+.. .+.+ + .+ +++|.|.|+++ ..
T Consensus 230 ~~~~~v~v~~Gs~~~~~~~~~~~~~~~l~~~~~~~~~~~~G~~~~----~~~l----~--~~-~~~v~~~~~~~-~~--- 294 (430)
T 2iyf_A 230 GAEKVVLVSLGSAFTKQPAFYRECVRAFGNLPGWHLVLQIGRKVT----PAEL----G--EL-PDNVEVHDWVP-QL--- 294 (430)
T ss_dssp TCSEEEEEECTTTCC-CHHHHHHHHHHHTTCTTEEEEEECC---C----GGGG----C--SC-CTTEEEESSCC-HH---
T ss_pred CCCCeEEEEcCCCCCCcHHHHHHHHHHHhcCCCeEEEEEeCCCCC----hHHh----c--cC-CCCeEEEecCC-HH---
Confidence 356678999998876566777777777766667676 45665411 1122 1 23 37899999986 22
Q ss_pred HhcccccEeecCCCCCCchhHHHHhhhCCceeecCCCccCccchhHHHhhhCCcccccC---CHHHHHHHHHHHhcCHHH
Q 003891 602 QAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIAK---NEDEYVQLALQLASDVTA 678 (788)
Q Consensus 602 ~~~~~~Dv~Ld~~~~~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l~~~gl~~~ia~---~~~~y~~~a~~l~~d~~~ 678 (788)
..|..+|+|+. -+|++|++|||++|+|+|+.+-.. .....+..+...|..-++.. |.++..+...++.+|++.
T Consensus 295 ~~l~~ad~~v~---~~G~~t~~Ea~~~G~P~i~~p~~~-~q~~~a~~~~~~g~g~~~~~~~~~~~~l~~~i~~ll~~~~~ 370 (430)
T 2iyf_A 295 AILRQADLFVT---HAGAGGSQEGLATATPMIAVPQAV-DQFGNADMLQGLGVARKLATEEATADLLRETALALVDDPEV 370 (430)
T ss_dssp HHHTTCSEEEE---CCCHHHHHHHHHTTCCEEECCCSH-HHHHHHHHHHHTTSEEECCCC-CCHHHHHHHHHHHHHCHHH
T ss_pred HHhhccCEEEE---CCCccHHHHHHHhCCCEEECCCcc-chHHHHHHHHHcCCEEEcCCCCCCHHHHHHHHHHHHcCHHH
Confidence 56778999985 256689999999999999976421 11123445566676544432 789999999999999998
Q ss_pred HHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHH
Q 003891 679 LANLRMSLRDLMSKSPVCDGQNFALGLESTYRNMWH 714 (788)
Q Consensus 679 ~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~ 714 (788)
++++++..+..... +..+..++.+|+.+++...
T Consensus 371 ~~~~~~~~~~~~~~---~~~~~~~~~i~~~~~~~~~ 403 (430)
T 2iyf_A 371 ARRLRRIQAEMAQE---GGTRRAADLIEAELPARHE 403 (430)
T ss_dssp HHHHHHHHHHHHHH---CHHHHHHHHHHTTSCC---
T ss_pred HHHHHHHHHHHHhc---CcHHHHHHHHHHHhhcccc
Confidence 88888776654332 3667777777777665443
No 248
>3dzc_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, in diseases, isomerase, center for structural genomics of INFE diseases, csgid; 2.35A {Vibrio cholerae}
Probab=98.51 E-value=9.2e-07 Score=96.40 Aligned_cols=147 Identities=13% Similarity=0.095 Sum_probs=103.3
Q ss_pred CCCCeEEEecCC---CCcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHH
Q 003891 523 TNGFITFGSFNN---LAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHD 599 (788)
Q Consensus 523 ~~~~~~f~~~~~---~~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~~~~l~~~~~~~gi~~~rv~~~~~~~~~~~ 599 (788)
+++.+++.+..| ..|..+.+++++.++.++.|+.++++..++ .+..++.+++. .+.. ++|.|.+.+. ..+
T Consensus 228 ~~~~~vlv~~hR~~~~~~~~~~ll~A~~~l~~~~~~~~~v~~~g~--~~~~~~~l~~~---~~~~-~~v~~~~~lg-~~~ 300 (396)
T 3dzc_A 228 ASKKLILVTGHRRESFGGGFERICQALITTAEQHPECQILYPVHL--NPNVREPVNKL---LKGV-SNIVLIEPQQ-YLP 300 (396)
T ss_dssp TTSEEEEEECSCBCCCTTHHHHHHHHHHHHHHHCTTEEEEEECCB--CHHHHHHHHHH---TTTC-TTEEEECCCC-HHH
T ss_pred CCCCEEEEEECCcccchhHHHHHHHHHHHHHHhCCCceEEEEeCC--ChHHHHHHHHH---HcCC-CCEEEeCCCC-HHH
Confidence 345555666644 335567899999999988999988875332 12345555443 2444 6899998876 578
Q ss_pred HHHhcccccEeecCCCCCCchhHHHHhhhCCceeecCCCccCccchhHHHhhhCCcccccCCHHHHHHHHHHHhcCHHHH
Q 003891 600 HMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIAKNEDEYVQLALQLASDVTAL 679 (788)
Q Consensus 600 ~~~~~~~~Dv~Ld~~~~~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l~~~gl~~~ia~~~~~y~~~a~~l~~d~~~~ 679 (788)
+..+|+.||+++-++ ||.+ +||+++|+|||+.... .+|. . +...|..-+|..|.++.++...+|.+|++.+
T Consensus 301 ~~~l~~~ad~vv~~S---Gg~~-~EA~a~G~PvV~~~~~--~~~~--e-~v~~G~~~lv~~d~~~l~~ai~~ll~d~~~~ 371 (396)
T 3dzc_A 301 FVYLMDRAHIILTDS---GGIQ-EEAPSLGKPVLVMRET--TERP--E-AVAAGTVKLVGTNQQQICDALSLLLTDPQAY 371 (396)
T ss_dssp HHHHHHHCSEEEESC---SGGG-TTGGGGTCCEEECCSS--CSCH--H-HHHHTSEEECTTCHHHHHHHHHHHHHCHHHH
T ss_pred HHHHHHhcCEEEECC---ccHH-HHHHHcCCCEEEccCC--Ccch--H-HHHcCceEEcCCCHHHHHHHHHHHHcCHHHH
Confidence 889999999998665 4444 9999999999985321 1221 1 2334655455568999999999999999888
Q ss_pred HHHHHH
Q 003891 680 ANLRMS 685 (788)
Q Consensus 680 ~~~r~~ 685 (788)
++|++.
T Consensus 372 ~~m~~~ 377 (396)
T 3dzc_A 372 QAMSQA 377 (396)
T ss_dssp HHHHTS
T ss_pred HHHhhc
Confidence 877764
No 249
>3ot5_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, center for structural genomics of infec diseases, csgid, alpha beta; HET: PGE; 2.20A {Listeria monocytogenes}
Probab=98.48 E-value=7.3e-07 Score=97.36 Aligned_cols=147 Identities=16% Similarity=0.193 Sum_probs=104.7
Q ss_pred CCCCeEEEecCCC---CcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHH
Q 003891 523 TNGFITFGSFNNL---AKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHD 599 (788)
Q Consensus 523 ~~~~~~f~~~~~~---~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~~~~l~~~~~~~gi~~~rv~~~~~~~~~~~ 599 (788)
+++.+++.+.++. -|..+.+++++.++.++.|+.++++.+++ .+..++.+++. .+.. ++|.|++.+. ..+
T Consensus 222 ~~~~~vlv~~~r~~~~~~~l~~ll~a~~~l~~~~~~~~~v~~~~~--~~~~~~~l~~~---~~~~-~~v~l~~~l~-~~~ 294 (403)
T 3ot5_A 222 GDNRLILMTAHRRENLGEPMQGMFEAVREIVESREDTELVYPMHL--NPAVREKAMAI---LGGH-ERIHLIEPLD-AID 294 (403)
T ss_dssp TTCEEEEECCCCHHHHTTHHHHHHHHHHHHHHHCTTEEEEEECCS--CHHHHHHHHHH---HTTC-TTEEEECCCC-HHH
T ss_pred cCCCEEEEEeCcccccCcHHHHHHHHHHHHHHhCCCceEEEecCC--CHHHHHHHHHH---hCCC-CCEEEeCCCC-HHH
Confidence 4555667777764 35458899999999999999888876433 12344444433 3444 6899999876 678
Q ss_pred HHHhcccccEeecCCCCCCchhHHHHhhhCCceeecCCCccCccchhHHHhhhCCcccccCCHHHHHHHHHHHhcCHHHH
Q 003891 600 HMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIAKNEDEYVQLALQLASDVTAL 679 (788)
Q Consensus 600 ~~~~~~~~Dv~Ld~~~~~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l~~~gl~~~ia~~~~~y~~~a~~l~~d~~~~ 679 (788)
+..+|..||+++-++ ||.+ +||+++|+|||+.+.. .+|.- +...|-.-+|..|.++.++...++.+|++.+
T Consensus 295 ~~~l~~~ad~vv~~S---Gg~~-~EA~a~g~PvV~~~~~--~~~~e---~v~~g~~~lv~~d~~~l~~ai~~ll~~~~~~ 365 (403)
T 3ot5_A 295 FHNFLRKSYLVFTDS---GGVQ-EEAPGMGVPVLVLRDT--TERPE---GIEAGTLKLIGTNKENLIKEALDLLDNKESH 365 (403)
T ss_dssp HHHHHHHEEEEEECC---HHHH-HHGGGTTCCEEECCSS--CSCHH---HHHHTSEEECCSCHHHHHHHHHHHHHCHHHH
T ss_pred HHHHHHhcCEEEECC---ccHH-HHHHHhCCCEEEecCC--Ccchh---heeCCcEEEcCCCHHHHHHHHHHHHcCHHHH
Confidence 999999999998554 4444 9999999999997421 12221 1234644455569999999999999999888
Q ss_pred HHHHHH
Q 003891 680 ANLRMS 685 (788)
Q Consensus 680 ~~~r~~ 685 (788)
++|++.
T Consensus 366 ~~m~~~ 371 (403)
T 3ot5_A 366 DKMAQA 371 (403)
T ss_dssp HHHHHS
T ss_pred HHHHhh
Confidence 887653
No 250
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=98.40 E-value=1.4e-06 Score=79.55 Aligned_cols=92 Identities=11% Similarity=0.047 Sum_probs=81.9
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhC-C-CCHHHHHHHHHHHHHcCCHHHHHH
Q 003891 216 NLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQG---KMDAAAEMIEKAIAAN-P-TYAEAYNNLGVLYRDAGSISLAID 290 (788)
Q Consensus 216 ~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g---~~~eA~~~l~kal~~~-p-~~~~~~~~la~~~~~~g~~~eA~~ 290 (788)
....+.+.|.+.++.++.+.++.+++|+++.+.+ +.++++.+++..++.+ | +..+.+++||..+.++|+|++|++
T Consensus 13 ~l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~ 92 (152)
T 1pc2_A 13 DLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALK 92 (152)
T ss_dssp HHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHH
Confidence 3456778888888888889999999999999988 6779999999999998 6 568999999999999999999999
Q ss_pred HHHHHHhhCCCChhhHH
Q 003891 291 AYEQCLKIDPDSRNAGQ 307 (788)
Q Consensus 291 ~~~~al~l~p~~~~a~~ 307 (788)
+++++++++|+|..+..
T Consensus 93 y~~~lL~ieP~n~QA~~ 109 (152)
T 1pc2_A 93 YVRGLLQTEPQNNQAKE 109 (152)
T ss_dssp HHHHHHHHCTTCHHHHH
T ss_pred HHHHHHhcCCCCHHHHH
Confidence 99999999999988754
No 251
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.39 E-value=1.7e-06 Score=72.96 Aligned_cols=72 Identities=15% Similarity=0.080 Sum_probs=59.7
Q ss_pred CCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 003891 231 KPNFSQSLNNLGVVYTVQGK---MDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDS 302 (788)
Q Consensus 231 ~p~~~~~~~~la~~~~~~g~---~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~ 302 (788)
+|++++.+..+|.+++..++ .++|...++++++.+|+++.+++.+|..+++.|+|++|+.+|+++++.+|++
T Consensus 2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~ 76 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPN 76 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTT
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 57778888888888876655 6888888888888888888888888888888888888888888888888873
No 252
>2p6p_A Glycosyl transferase; X-RAY-diffraction,urdamycina-biosynthesis; 1.88A {Streptomyces fradiae}
Probab=98.37 E-value=5.9e-06 Score=89.63 Aligned_cols=162 Identities=13% Similarity=0.067 Sum_probs=102.7
Q ss_pred CCCeEEEecCCCCcC-----CHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcH
Q 003891 524 NGFITFGSFNNLAKI-----TPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNH 598 (788)
Q Consensus 524 ~~~~~f~~~~~~~K~-----~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~~~~l~~~~~~~gi~~~rv~~~~~~~~~~ 598 (788)
+..++|.++++.... ....+....+.+... +.++++++++ ...+.+. . + +++|.+ ++++ ..
T Consensus 209 ~~~~v~v~~Gs~~~~~~~~~~~~~~~~~~~al~~~-~~~~~~~~g~----~~~~~l~----~--~-~~~v~~-~~~~-~~ 274 (384)
T 2p6p_A 209 TRQRVLVTSGSRVAKESYDRNFDFLRGLAKDLVRW-DVELIVAAPD----TVAEALR----A--E-VPQARV-GWTP-LD 274 (384)
T ss_dssp SSCEEEEECSSSSSCCSSCCCCTTHHHHHHHHHTT-TCEEEEECCH----HHHHHHH----H--H-CTTSEE-ECCC-HH
T ss_pred CCCEEEEECCCCCccccccccHHHHHHHHHHHhcC-CcEEEEEeCC----CCHHhhC----C--C-CCceEE-cCCC-HH
Confidence 446778888877543 223344334444443 5666665433 2333332 2 2 478999 9875 44
Q ss_pred HHHHhcccccEeecCCCCCCchhHHHHhhhCCceeecCCCccCccchhHHHhhhCCcccccC---CHHHHHHHHHHHhcC
Q 003891 599 DHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIAK---NEDEYVQLALQLASD 675 (788)
Q Consensus 599 ~~~~~~~~~Dv~Ld~~~~~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l~~~gl~~~ia~---~~~~y~~~a~~l~~d 675 (788)
+ .+..||+|+.. +|+.|++|||++|||+|+.+-.. .....+..+...|..-++.. +.++..+...++.+|
T Consensus 275 ~---~l~~~d~~v~~---~G~~t~~Ea~~~G~P~v~~p~~~-dq~~~a~~~~~~g~g~~~~~~~~~~~~l~~~i~~ll~~ 347 (384)
T 2p6p_A 275 V---VAPTCDLLVHH---AGGVSTLTGLSAGVPQLLIPKGS-VLEAPARRVADYGAAIALLPGEDSTEAIADSCQELQAK 347 (384)
T ss_dssp H---HGGGCSEEEEC---SCTTHHHHHHHTTCCEEECCCSH-HHHHHHHHHHHHTSEEECCTTCCCHHHHHHHHHHHHHC
T ss_pred H---HHhhCCEEEeC---CcHHHHHHHHHhCCCEEEccCcc-cchHHHHHHHHCCCeEecCcCCCCHHHHHHHHHHHHcC
Confidence 4 45679999953 56679999999999999987421 01223445566676554532 788999988899999
Q ss_pred HHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHH
Q 003891 676 VTALANLRMSLRDLMSKSPVCDGQNFALGLESTY 709 (788)
Q Consensus 676 ~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~ 709 (788)
++.++++++..+... ..+ ..++.+..+|...
T Consensus 348 ~~~~~~~~~~~~~~~-~~~--~~~~~~~~i~~~~ 378 (384)
T 2p6p_A 348 DTYARRAQDLSREIS-GMP--LPATVVTALEQLA 378 (384)
T ss_dssp HHHHHHHHHHHHHHH-TSC--CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-hCC--CHHHHHHHHHHHh
Confidence 998888877665443 222 4666666666654
No 253
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.30 E-value=3.5e-06 Score=70.93 Aligned_cols=72 Identities=14% Similarity=-0.049 Sum_probs=65.0
Q ss_pred CCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCc
Q 003891 54 DPHYAPAYYNLGVVYSELMQ---YDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNF 125 (788)
Q Consensus 54 ~p~~~~~~~~lg~~~~~~g~---~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 125 (788)
+|+++..+..+|.+++..++ .++|...++++++.+|++..+++.+|..++..|+|++|+.+++++++.+|..
T Consensus 2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~ 76 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPN 76 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTT
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 68889999999999987666 7999999999999999999999999999999999999999999999998883
No 254
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=98.29 E-value=6.1e-06 Score=75.27 Aligned_cols=92 Identities=10% Similarity=-0.012 Sum_probs=83.0
Q ss_pred hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhC-C-CCHHHHHHHHHHHHHCCCHHHHHHH
Q 003891 40 TQDGIQKYYEALKIDPHYAPAYYNLGVVYSELM---QYDTALGCYEKAALER-P-MYAEAYCNMGVIYKNRGDLESAIAC 114 (788)
Q Consensus 40 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g---~~~~A~~~~~kal~~~-p-~~~~~~~~la~~~~~~g~~~~A~~~ 114 (788)
...+.+.|.+.++.++.+.++.+++|.++.+.+ +.++++..++.+++.+ | ...++++++|..+++.|+|++|.++
T Consensus 14 l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y 93 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKY 93 (152)
T ss_dssp HHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHH
Confidence 456788888888888999999999999999988 6779999999999998 7 5689999999999999999999999
Q ss_pred HHHHHhhCCCcHHHHHH
Q 003891 115 YERCLAVSPNFEIAKNN 131 (788)
Q Consensus 115 ~~~al~~~p~~~~~~~~ 131 (788)
+++++++.|++..+...
T Consensus 94 ~~~lL~ieP~n~QA~~L 110 (152)
T 1pc2_A 94 VRGLLQTEPQNNQAKEL 110 (152)
T ss_dssp HHHHHHHCTTCHHHHHH
T ss_pred HHHHHhcCCCCHHHHHH
Confidence 99999999998765443
No 255
>4amg_A Snogd; transferase, polyketide biosynthesis, GT1 family, nogalamyci; HET: MLY; 2.59A {Streptomyces nogalater} PDB: 4an4_A* 4amb_A*
Probab=98.28 E-value=1.1e-05 Score=87.77 Aligned_cols=163 Identities=15% Similarity=0.057 Sum_probs=103.8
Q ss_pred CCCCCeEEEecCCCC--cCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHH
Q 003891 522 LTNGFITFGSFNNLA--KITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHD 599 (788)
Q Consensus 522 ~~~~~~~f~~~~~~~--K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~~~~l~~~~~~~gi~~~rv~~~~~~~~~~~ 599 (788)
.++..++|.+|++.. +...+.+....+.+...+.-.+|..+.... ...+--++++.+.++++ ..+
T Consensus 234 ~~~~~~v~vs~Gs~~~~~~~~~~~~~~~~~l~~~~~~~v~~~~~~~~------------~~~~~~~~~v~~~~~~p-~~~ 300 (400)
T 4amg_A 234 AAGRRRIAVTLGSIDALSGGIAKLAPLFSEVADVDAEFVLTLGGGDL------------ALLGELPANVRVVEWIP-LGA 300 (400)
T ss_dssp CTTCCEEEECCCSCC--CCSSSTTHHHHHHGGGSSSEEEEECCTTCC------------CCCCCCCTTEEEECCCC-HHH
T ss_pred cCCCcEEEEeCCcccccCccHHHHHHHHHHhhccCceEEEEecCccc------------cccccCCCCEEEEeecC-HHH
Confidence 356678888888763 333455666677777777666665543311 11122358999999987 455
Q ss_pred HHHhcccccEeecCCCCCCchhHHHHhhhCCceeecCCCccCccchhHHHhhhCCcccccCCHHHHHHHHHHHhcCHHHH
Q 003891 600 HMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIAKNEDEYVQLALQLASDVTAL 679 (788)
Q Consensus 600 ~~~~~~~~Dv~Ld~~~~~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l~~~gl~~~ia~~~~~y~~~a~~l~~d~~~~ 679 (788)
.+ ..+|+|+. .+|.+|++|||++|||+|+++-.. -....+..+...|+.-.+ .+.+.-.+...++.+|++.+
T Consensus 301 lL---~~~~~~v~---h~G~~s~~Eal~~GvP~v~~P~~~-dQ~~na~~v~~~G~g~~l-~~~~~~~~al~~lL~d~~~r 372 (400)
T 4amg_A 301 LL---ETCDAIIH---HGGSGTLLTALAAGVPQCVIPHGS-YQDTNRDVLTGLGIGFDA-EAGSLGAEQCRRLLDDAGLR 372 (400)
T ss_dssp HH---TTCSEEEE---CCCHHHHHHHHHHTCCEEECCC----CHHHHHHHHHHTSEEEC-CTTTCSHHHHHHHHHCHHHH
T ss_pred Hh---hhhhheec---cCCccHHHHHHHhCCCEEEecCcc-cHHHHHHHHHHCCCEEEc-CCCCchHHHHHHHHcCHHHH
Confidence 44 55999882 477889999999999999987421 233345566667775333 23333345666788999877
Q ss_pred HHHHHHHHHHhhcCCCCChHHHHHHHHHH
Q 003891 680 ANLRMSLRDLMSKSPVCDGQNFALGLEST 708 (788)
Q Consensus 680 ~~~r~~~~~~~~~~~~~~~~~~~~~~e~~ 708 (788)
++.++ +++.+...+ .....++.||+.
T Consensus 373 ~~a~~-l~~~~~~~~--~~~~~a~~le~l 398 (400)
T 4amg_A 373 EAALR-VRQEMSEMP--PPAETAAXLVAL 398 (400)
T ss_dssp HHHHH-HHHHHHTSC--CHHHHHHHHHHH
T ss_pred HHHHH-HHHHHHcCC--CHHHHHHHHHHh
Confidence 77554 444554443 567788888764
No 256
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=98.26 E-value=4.2e-06 Score=91.73 Aligned_cols=93 Identities=14% Similarity=0.096 Sum_probs=59.8
Q ss_pred HcCCHHHHHHHHHHHHhh-----CCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCC---HHHHHHHH
Q 003891 213 DRDNLDKAVECYQMALSI-----KPNFS---QSLNNLGVVYTVQGKMDAAAEMIEKAIAA-----NPTY---AEAYNNLG 276 (788)
Q Consensus 213 ~~g~~~eA~~~~~~al~~-----~p~~~---~~~~~la~~~~~~g~~~eA~~~l~kal~~-----~p~~---~~~~~~la 276 (788)
..|+|++|+..+++++++ .|+++ ..+.++|.+|..+|+|++|+.++++++++ .|++ ...+++||
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 346677777777777664 33443 35667777777777777777777777654 2333 44566777
Q ss_pred HHHHHcCCHHHHHHHHHHHHhh-----CCCChhh
Q 003891 277 VLYRDAGSISLAIDAYEQCLKI-----DPDSRNA 305 (788)
Q Consensus 277 ~~~~~~g~~~eA~~~~~~al~l-----~p~~~~a 305 (788)
.+|..+|++++|+.+|++|+++ .|+++..
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~ 423 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYI 423 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHH
T ss_pred HHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHH
Confidence 7777777777777777777664 5555544
No 257
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=98.24 E-value=3e-06 Score=93.01 Aligned_cols=87 Identities=9% Similarity=0.018 Sum_probs=45.0
Q ss_pred HHcCChHHHHHHHHHHHhc-----CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----CCCC---HHHHHHH
Q 003891 178 GEMLKFDMAIVFYELAFHF-----NPHC---AEACNNLGVIYKDRDNLDKAVECYQMALSI-----KPNF---SQSLNNL 241 (788)
Q Consensus 178 ~~~g~~~~A~~~~~~al~~-----~p~~---~~~~~~la~~~~~~g~~~eA~~~~~~al~~-----~p~~---~~~~~~l 241 (788)
..+|++++|+..++++++. .|++ ..++.++|.+|..+|+|++|+.++++++++ .+++ ...++++
T Consensus 298 ~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nL 377 (429)
T 3qwp_A 298 KAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKV 377 (429)
T ss_dssp HHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHH
T ss_pred HhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHH
Confidence 3455555555555555543 1222 344555555555555555555555555543 2222 2245555
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHh
Q 003891 242 GVVYTVQGKMDAAAEMIEKAIAA 264 (788)
Q Consensus 242 a~~~~~~g~~~eA~~~l~kal~~ 264 (788)
|.+|..+|++++|+.+|++|+++
T Consensus 378 a~~~~~~g~~~eA~~~~~~Al~i 400 (429)
T 3qwp_A 378 GKLQLHQGMFPQAMKNLRLAFDI 400 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHHHHH
Confidence 55555555555555555555543
No 258
>4hwg_A UDP-N-acetylglucosamine 2-epimerase; ssgcid, structural genomics, seattle structural genomics center for infectious disease, isomerase; 2.00A {Rickettsia bellii}
Probab=98.22 E-value=9.4e-07 Score=95.68 Aligned_cols=169 Identities=14% Similarity=0.071 Sum_probs=110.4
Q ss_pred CCCCCCCeEEEecCCCC-----cCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHc-C-CC-CCcEEEc
Q 003891 520 PALTNGFITFGSFNNLA-----KITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQL-G-LE-SLRVDLL 591 (788)
Q Consensus 520 ~~~~~~~~~f~~~~~~~-----K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~~~~l~~~~~~~-g-i~-~~rv~~~ 591 (788)
.+++.+.+++.+.++.. |..+.+++++.++.+.. +..+++...+ . +++.+++. | +. .++|.+.
T Consensus 198 lgl~~~~~iLvt~hr~e~~~~~~~l~~ll~al~~l~~~~-~~~vv~p~~p----~----~~~~l~~~~~~~~~~~~v~l~ 268 (385)
T 4hwg_A 198 LSLTPKQYFLISSHREENVDVKNNLKELLNSLQMLIKEY-NFLIIFSTHP----R----TKKRLEDLEGFKELGDKIRFL 268 (385)
T ss_dssp TTCCTTSEEEEEECCC-----CHHHHHHHHHHHHHHHHH-CCEEEEEECH----H----HHHHHHTSGGGGGTGGGEEEC
T ss_pred cCCCcCCEEEEEeCCchhcCcHHHHHHHHHHHHHHHhcC-CeEEEEECCh----H----HHHHHHHHHHHhcCCCCEEEE
Confidence 34555566677777653 44568888888887765 6666654332 2 44555555 5 42 3689998
Q ss_pred CCcCCcHHHHHhcccccEeecCCCCCCchhHHHHhhhCCceeecCCCccCccchhHHHhhhCCcccccCCHHHHHHHHHH
Q 003891 592 PLILLNHDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIAKNEDEYVQLALQ 671 (788)
Q Consensus 592 ~~~~~~~~~~~~~~~~Dv~Ld~~~~~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l~~~gl~~~ia~~~~~y~~~a~~ 671 (788)
+... ..++..++..||+++..+ || .+.||+++|+|||++...+ .|.-. ...|-.-+|..|.++.++...+
T Consensus 269 ~~lg-~~~~~~l~~~adlvvt~S---Gg-v~~EA~alG~Pvv~~~~~t--er~e~---v~~G~~~lv~~d~~~i~~ai~~ 338 (385)
T 4hwg_A 269 PAFS-FTDYVKLQMNAFCILSDS---GT-ITEEASILNLPALNIREAH--ERPEG---MDAGTLIMSGFKAERVLQAVKT 338 (385)
T ss_dssp CCCC-HHHHHHHHHHCSEEEECC---TT-HHHHHHHTTCCEEECSSSC--SCTHH---HHHTCCEECCSSHHHHHHHHHH
T ss_pred cCCC-HHHHHHHHHhCcEEEECC---cc-HHHHHHHcCCCEEEcCCCc--cchhh---hhcCceEEcCCCHHHHHHHHHH
Confidence 8876 678899999999999433 44 4699999999999976532 12221 2336555565699999999999
Q ss_pred HhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHH
Q 003891 672 LASDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTY 709 (788)
Q Consensus 672 l~~d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~ 709 (788)
|.+|+..++.|++...... ..-...++.++.++..+
T Consensus 339 ll~d~~~~~~m~~~~~~~~--g~g~aa~rI~~~l~~~~ 374 (385)
T 4hwg_A 339 ITEEHDNNKRTQGLVPDYN--EAGLVSKKILRIVLSYV 374 (385)
T ss_dssp HHTTCBTTBCCSCCCHHHH--TCCCHHHHHHHHHHHHH
T ss_pred HHhChHHHHHhhccCCCCC--CCChHHHHHHHHHHHHh
Confidence 9999877666554333210 11124566666666654
No 259
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=98.20 E-value=1.2e-05 Score=69.40 Aligned_cols=75 Identities=17% Similarity=0.200 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhhHH
Q 003891 235 SQSLNNLGVVYTVQGKMDAAAEMIEKAIAAN-------PTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQ 307 (788)
Q Consensus 235 ~~~~~~la~~~~~~g~~~eA~~~l~kal~~~-------p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~a~~ 307 (788)
+.-.+.+|..++..|+|..|+.+|++|++.. +....++..+|.++.++|++++|+.+++++++++|++..+..
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~ 84 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANG 84 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHh
Confidence 3344556666666666666666666665542 234566666777777777777777777777777777666655
Q ss_pred hH
Q 003891 308 NR 309 (788)
Q Consensus 308 ~~ 309 (788)
++
T Consensus 85 n~ 86 (104)
T 2v5f_A 85 NL 86 (104)
T ss_dssp HH
T ss_pred hH
Confidence 43
No 260
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=98.18 E-value=4.2e-06 Score=91.72 Aligned_cols=96 Identities=10% Similarity=0.069 Sum_probs=80.4
Q ss_pred HHHHHHcCChHHHHHHHHHHHHh-----CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCC---HHH
Q 003891 31 GTSLKLAGNTQDGIQKYYEALKI-----DPHY---APAYYNLGVVYSELMQYDTALGCYEKAALE-----RPMY---AEA 94 (788)
Q Consensus 31 g~~~~~~g~~~~A~~~~~~al~~-----~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~kal~~-----~p~~---~~~ 94 (788)
.......|+|++|+..|++++++ .|++ ..++.++|.+|..+|+|++|+.+++++++. .|++ +..
T Consensus 305 ~~~~~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~ 384 (433)
T 3qww_A 305 FRRAKHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASM 384 (433)
T ss_dssp HHHHTTTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHhhhccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHH
Confidence 44444568999999999999986 3444 567899999999999999999999999874 3444 567
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhh-----CCCcH
Q 003891 95 YCNMGVIYKNRGDLESAIACYERCLAV-----SPNFE 126 (788)
Q Consensus 95 ~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~~~ 126 (788)
+++||.+|..+|++++|+.+|++|+++ .|+++
T Consensus 385 l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp 421 (433)
T 3qww_A 385 WLKLGRLYMGLENKAAGEKALKKAIAIMEVAHGKDHP 421 (433)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCh
Confidence 999999999999999999999999986 45555
No 261
>2iya_A OLEI, oleandomycin glycosyltransferase; carbohydrate, glycosylation, enzyme, macrolide; HET: UDP ZIO; 1.7A {Streptomyces antibioticus}
Probab=98.18 E-value=3.3e-05 Score=84.92 Aligned_cols=165 Identities=12% Similarity=0.100 Sum_probs=107.8
Q ss_pred CCCCeEEEecCCCCcCCHHHHHHHHHHHhHcCCcEE-EEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHHH
Q 003891 523 TNGFITFGSFNNLAKITPKVLQVWARILCAVPNSRL-VVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHM 601 (788)
Q Consensus 523 ~~~~~~f~~~~~~~K~~~~~~~~~~~il~~~p~~~l-~l~~~~~~~~~~~~~l~~~~~~~gi~~~rv~~~~~~~~~~~~~ 601 (788)
+++.++|.++++......+.+....+.+.. ++.++ |+.|.+... +.+ . .+ +++|.+.++++ ..
T Consensus 253 ~~~~~v~v~~Gs~~~~~~~~~~~~~~al~~-~~~~~~~~~g~~~~~----~~~----~--~~-~~~v~~~~~~~-~~--- 316 (424)
T 2iya_A 253 DGRPVLLIALGSAFTDHLDFYRTCLSAVDG-LDWHVVLSVGRFVDP----ADL----G--EV-PPNVEVHQWVP-QL--- 316 (424)
T ss_dssp SSCCEEEEECCSSSCCCHHHHHHHHHHHTT-CSSEEEEECCTTSCG----GGG----C--SC-CTTEEEESSCC-HH---
T ss_pred CCCCEEEEEcCCCCcchHHHHHHHHHHHhc-CCcEEEEEECCcCCh----HHh----c--cC-CCCeEEecCCC-HH---
Confidence 345688888888765556666655555654 44555 445543211 111 1 23 47899999987 33
Q ss_pred HhcccccEeecCCCCCCchhHHHHhhhCCceeecCCCccCccchhHHHhhhCCcccccC---CHHHHHHHHHHHhcCHHH
Q 003891 602 QAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIAK---NEDEYVQLALQLASDVTA 678 (788)
Q Consensus 602 ~~~~~~Dv~Ld~~~~~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l~~~gl~~~ia~---~~~~y~~~a~~l~~d~~~ 678 (788)
..+..+|+|+. -+|.+|++||+++|||+|+.+-.. .....+..+...|..-.+.. +.++..+...++.+|++.
T Consensus 317 ~~l~~~d~~v~---~~G~~t~~Ea~~~G~P~i~~p~~~-dQ~~na~~l~~~g~g~~~~~~~~~~~~l~~~i~~ll~~~~~ 392 (424)
T 2iya_A 317 DILTKASAFIT---HAGMGSTMEALSNAVPMVAVPQIA-EQTMNAERIVELGLGRHIPRDQVTAEKLREAVLAVASDPGV 392 (424)
T ss_dssp HHHTTCSEEEE---CCCHHHHHHHHHTTCCEEECCCSH-HHHHHHHHHHHTTSEEECCGGGCCHHHHHHHHHHHHHCHHH
T ss_pred HHHhhCCEEEE---CCchhHHHHHHHcCCCEEEecCcc-chHHHHHHHHHCCCEEEcCcCCCCHHHHHHHHHHHHcCHHH
Confidence 45677999984 367789999999999999987531 12334455666777554432 789999999999999988
Q ss_pred HHHHHHHHHHHhhcCCCCChHHHHHHHHHHHH
Q 003891 679 LANLRMSLRDLMSKSPVCDGQNFALGLESTYR 710 (788)
Q Consensus 679 ~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~ 710 (788)
++++++..+.. .. ....+..++.+|+..+
T Consensus 393 ~~~~~~~~~~~-~~--~~~~~~~~~~i~~~~~ 421 (424)
T 2iya_A 393 AERLAAVRQEI-RE--AGGARAAADILEGILA 421 (424)
T ss_dssp HHHHHHHHHHH-HT--SCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-Hh--cCcHHHHHHHHHHHHh
Confidence 77776655433 22 1345666777776643
No 262
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=98.17 E-value=1.5e-05 Score=68.71 Aligned_cols=76 Identities=24% Similarity=0.250 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 003891 201 AEACNNLGVIYKDRDNLDKAVECYQMALSIK-------PNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYN 273 (788)
Q Consensus 201 ~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-------p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~ 273 (788)
+.-++.+|..++..++|..|+..|++|++.. .....++..+|.++.++|++++|+.++++++++.|++..+..
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~ 84 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANG 84 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHh
Confidence 4455667777777777777777777776642 234567777777777777777777777777777777777766
Q ss_pred HHH
Q 003891 274 NLG 276 (788)
Q Consensus 274 ~la 276 (788)
+++
T Consensus 85 n~~ 87 (104)
T 2v5f_A 85 NLK 87 (104)
T ss_dssp HHH
T ss_pred hHH
Confidence 665
No 263
>2yjn_A ERYCIII, glycosyltransferase; transferase, cytochrome P450; 3.09A {Saccharopolyspora erythraea}
Probab=98.14 E-value=1.1e-05 Score=89.40 Aligned_cols=160 Identities=10% Similarity=0.039 Sum_probs=103.6
Q ss_pred CCCeEEEecCCCC-------cCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCC
Q 003891 524 NGFITFGSFNNLA-------KITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILL 596 (788)
Q Consensus 524 ~~~~~f~~~~~~~-------K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~~~~l~~~~~~~gi~~~rv~~~~~~~~ 596 (788)
+..++|.++++.. |....+++.+.+ . +.++++.+++.. .+.+ . ++ +++|.+.++++
T Consensus 266 ~~~~v~v~~Gs~~~~~~~~~~~~~~~~~al~~----~-~~~~v~~~g~~~----~~~l----~--~~-~~~v~~~~~~~- 328 (441)
T 2yjn_A 266 ERRRVCLTLGISSRENSIGQVSIEELLGAVGD----V-DAEIIATFDAQQ----LEGV----A--NI-PDNVRTVGFVP- 328 (441)
T ss_dssp SSCEEEEEC----------CCSTTTTHHHHHT----S-SSEEEECCCTTT----TSSC----S--SC-CSSEEECCSCC-
T ss_pred CCCEEEEECCCCcccccChHHHHHHHHHHHHc----C-CCEEEEEECCcc----hhhh----c--cC-CCCEEEecCCC-
Confidence 4456677777653 555566655433 2 466666554311 1111 1 33 47899999987
Q ss_pred cHHHHHhcccccEeecCCCCCCchhHHHHhhhCCceeecCCCccCccchhHHHhhhCCcccccC---CHHHHHHHHHHHh
Q 003891 597 NHDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIAK---NEDEYVQLALQLA 673 (788)
Q Consensus 597 ~~~~~~~~~~~Dv~Ld~~~~~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l~~~gl~~~ia~---~~~~y~~~a~~l~ 673 (788)
..+ .+..||+++. -+|..|++|||++|||+|+.+-.. .....+..+...|..-.+.. +.++..+...++.
T Consensus 329 ~~~---ll~~ad~~V~---~~G~~t~~Ea~~~G~P~i~~p~~~-dQ~~na~~l~~~g~g~~~~~~~~~~~~l~~~i~~ll 401 (441)
T 2yjn_A 329 MHA---LLPTCAATVH---HGGPGSWHTAAIHGVPQVILPDGW-DTGVRAQRTQEFGAGIALPVPELTPDQLRESVKRVL 401 (441)
T ss_dssp HHH---HGGGCSEEEE---CCCHHHHHHHHHTTCCEEECCCSH-HHHHHHHHHHHHTSEEECCTTTCCHHHHHHHHHHHH
T ss_pred HHH---HHhhCCEEEE---CCCHHHHHHHHHhCCCEEEeCCcc-cHHHHHHHHHHcCCEEEcccccCCHHHHHHHHHHHh
Confidence 343 4677999994 367789999999999999987521 11233455666777655542 7889999999999
Q ss_pred cCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHH
Q 003891 674 SDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYR 710 (788)
Q Consensus 674 ~d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~ 710 (788)
+|++.++++++..+.... ....+..++.+|+...
T Consensus 402 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~i~~~~~ 435 (441)
T 2yjn_A 402 DDPAHRAGAARMRDDMLA---EPSPAEVVGICEELAA 435 (441)
T ss_dssp HCHHHHHHHHHHHHHHHT---SCCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHc---CCCHHHHHHHHHHHHH
Confidence 999988888776654432 2357788888887654
No 264
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=98.12 E-value=9.1e-06 Score=89.21 Aligned_cols=101 Identities=8% Similarity=-0.067 Sum_probs=83.9
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHh-----CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCC--
Q 003891 27 LTDLGTSLKLAGNTQDGIQKYYEALKI-----DPHY---APAYYNLGVVYSELMQYDTALGCYEKAALE-----RPMY-- 91 (788)
Q Consensus 27 l~~lg~~~~~~g~~~~A~~~~~~al~~-----~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~kal~~-----~p~~-- 91 (788)
.......+..+|++++|+..++++++. .|++ ..++.++|.+|..+|+|++|+.+++++++. .|++
T Consensus 290 ll~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~ 369 (429)
T 3qwp_A 290 SLKKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPV 369 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHH
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChH
Confidence 334445567889999999999999976 3444 568899999999999999999999999874 3444
Q ss_pred -HHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-----CCCcHH
Q 003891 92 -AEAYCNMGVIYKNRGDLESAIACYERCLAV-----SPNFEI 127 (788)
Q Consensus 92 -~~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~~~~ 127 (788)
...++++|.+|..+|++++|+.+|++++++ .|+++.
T Consensus 370 ~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~ 411 (429)
T 3qwp_A 370 RGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSL 411 (429)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChH
Confidence 567999999999999999999999999976 566663
No 265
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=98.03 E-value=0.00081 Score=75.27 Aligned_cols=159 Identities=9% Similarity=0.005 Sum_probs=131.0
Q ss_pred hhhhhhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCC---------hHHHHHHHHHHHhcC-CCCHHHHHHHH
Q 003891 140 GTKVKLEGDINQGVAYYKKALYYN-WHYADAMYNLGVAYGEMLK---------FDMAIVFYELAFHFN-PHCAEACNNLG 208 (788)
Q Consensus 140 g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~---------~~~A~~~~~~al~~~-p~~~~~~~~la 208 (788)
-..+.+.|+.++|++.|++..+.. .-+...|..+-.++...+. .++|.+.|++..... .-+...|..+.
T Consensus 33 id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI 112 (501)
T 4g26_A 33 LDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEATFTNGA 112 (501)
T ss_dssp HHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 356678899999999999998764 2355667767666655443 688999999887653 23678899999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHH
Q 003891 209 VIYKDRDNLDKAVECYQMALSIK-PNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAAN-PTYAEAYNNLGVLYRDAGSIS 286 (788)
Q Consensus 209 ~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~-p~~~~~~~~la~~~~~~g~~~ 286 (788)
..|.+.|++++|.++|++..+.. ..+...|..+-..|.+.|+.++|.+.+++..+.. .-+...|..+...|.+.|+.+
T Consensus 113 ~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d 192 (501)
T 4g26_A 113 RLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNAD 192 (501)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHH
Confidence 99999999999999999988763 3467889999999999999999999999998763 224778999999999999999
Q ss_pred HHHHHHHHHHhh
Q 003891 287 LAIDAYEQCLKI 298 (788)
Q Consensus 287 eA~~~~~~al~l 298 (788)
+|.+.+++..+.
T Consensus 193 ~A~~ll~~Mr~~ 204 (501)
T 4g26_A 193 KVYKTLQRLRDL 204 (501)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999998764
No 266
>1iir_A Glycosyltransferase GTFB; rossmann fold; 1.80A {Amycolatopsis orientalis} SCOP: c.87.1.5
Probab=98.03 E-value=5e-05 Score=83.24 Aligned_cols=157 Identities=9% Similarity=-0.012 Sum_probs=98.5
Q ss_pred CeEEEecCCCCcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHHHHhcc
Q 003891 526 FITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYS 605 (788)
Q Consensus 526 ~~~f~~~~~~~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~~~~l~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~ 605 (788)
.++|.++++.. .....++...+.+...+.-.+|+.|.+.. . ..++ +++|.+.++++ ..+ .+.
T Consensus 239 ~~v~v~~Gs~~-~~~~~~~~~~~al~~~~~~~v~~~g~~~~--~----------~~~~-~~~v~~~~~~~-~~~---~l~ 300 (415)
T 1iir_A 239 PPVYLGFGSLG-APADAVRVAIDAIRAHGRRVILSRGWADL--V----------LPDD-GADCFAIGEVN-HQV---LFG 300 (415)
T ss_dssp CCEEEECC----CCHHHHHHHHHHHHHTTCCEEECTTCTTC--C----------CSSC-GGGEEECSSCC-HHH---HGG
T ss_pred CeEEEeCCCCC-CcHHHHHHHHHHHHHCCCeEEEEeCCCcc--c----------ccCC-CCCEEEeCcCC-hHH---HHh
Confidence 46777888765 44566666666666666444454454311 0 0133 37899999987 344 358
Q ss_pred cccEeecCCCCCCchhHHHHhhhCCceeecCCCccCccchhHHHhhhCCcccccC---CHHHHHHHHHHHhcCHHHHHHH
Q 003891 606 LMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIAK---NEDEYVQLALQLASDVTALANL 682 (788)
Q Consensus 606 ~~Dv~Ld~~~~~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l~~~gl~~~ia~---~~~~y~~~a~~l~~d~~~~~~~ 682 (788)
.||+|+. -+|.+|++||+++|||+|+++-. ......+..+...|..-.+.. +.++..+...++ +|++.++++
T Consensus 301 ~~d~~v~---~~G~~t~~Ea~~~G~P~i~~p~~-~dQ~~na~~l~~~g~g~~~~~~~~~~~~l~~~i~~l-~~~~~~~~~ 375 (415)
T 1iir_A 301 RVAAVIH---HGGAGTTHVAARAGAPQILLPQM-ADQPYYAGRVAELGVGVAHDGPIPTFDSLSAALATA-LTPETHARA 375 (415)
T ss_dssp GSSEEEE---CCCHHHHHHHHHHTCCEEECCCS-TTHHHHHHHHHHHTSEEECSSSSCCHHHHHHHHHHH-TSHHHHHHH
T ss_pred hCCEEEe---CCChhHHHHHHHcCCCEEECCCC-CccHHHHHHHHHCCCcccCCcCCCCHHHHHHHHHHH-cCHHHHHHH
Confidence 8999994 36677999999999999998742 112234555667777655532 788998988899 998877777
Q ss_pred HHHHHHHhhcCCCCChHHHHHHHHHH
Q 003891 683 RMSLRDLMSKSPVCDGQNFALGLEST 708 (788)
Q Consensus 683 r~~~~~~~~~~~~~~~~~~~~~~e~~ 708 (788)
++..+.. . ..-..+..++.+|+.
T Consensus 376 ~~~~~~~-~--~~~~~~~~~~~i~~~ 398 (415)
T 1iir_A 376 TAVAGTI-R--TDGAAVAARLLLDAV 398 (415)
T ss_dssp HHHHHHS-C--SCHHHHHHHHHHHHH
T ss_pred HHHHHHH-h--hcChHHHHHHHHHHH
Confidence 6655432 1 122334455555554
No 267
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=97.93 E-value=0.0014 Score=73.27 Aligned_cols=182 Identities=10% Similarity=0.032 Sum_probs=135.6
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCcHHHHHHHHHHHHHhhh--hhhhcCCHHHHHHHHHHHHHhCC-CCHH
Q 003891 94 AYCNMGVIYKNRGDLESAIACYERCLAVS--PNFEIAKNNMAIALTDLGT--KVKLEGDINQGVAYYKKALYYNW-HYAD 168 (788)
Q Consensus 94 ~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~l~~lg~--~~~~~g~~~~A~~~~~~al~~~p-~~~~ 168 (788)
.+..+-..+.+.|+.++|++.|+++.+.. |+ ...+..+..++...+. .....+..++|.+.|++..+..- -+..
T Consensus 28 ~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd-~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ 106 (501)
T 4g26_A 28 LLKQKLDMCSKKGDVLEALRLYDEARRNGVQLS-QYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEA 106 (501)
T ss_dssp HHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCC-HHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC-HhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHH
Confidence 35556677888999999999999887753 43 2233333322222111 11233458899999999887642 3677
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHH
Q 003891 169 AMYNLGVAYGEMLKFDMAIVFYELAFHFN-PHCAEACNNLGVIYKDRDNLDKAVECYQMALSIK-PNFSQSLNNLGVVYT 246 (788)
Q Consensus 169 ~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~la~~~~ 246 (788)
.|..+...|.+.|++++|.+++++..+.. .-+...|..+-..|.+.|+.++|.++|++..+.. ..+...|..+...|.
T Consensus 107 tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~ 186 (501)
T 4g26_A 107 TFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSM 186 (501)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHh
Confidence 89999999999999999999999988753 3358889999999999999999999999998763 335778999999999
Q ss_pred HcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Q 003891 247 VQGKMDAAAEMIEKAIAA--NPTYAEAYNNLGV 277 (788)
Q Consensus 247 ~~g~~~eA~~~l~kal~~--~p~~~~~~~~la~ 277 (788)
+.|+.++|.+++++..+. .|+ ...+..+-.
T Consensus 187 ~~g~~d~A~~ll~~Mr~~g~~ps-~~T~~~l~~ 218 (501)
T 4g26_A 187 DTKNADKVYKTLQRLRDLVRQVS-KSTFDMIEE 218 (501)
T ss_dssp HTTCHHHHHHHHHHHHHHTSSBC-HHHHHHHHH
T ss_pred hCCCHHHHHHHHHHHHHhCCCcC-HHHHHHHHH
Confidence 999999999999998775 344 334443433
No 268
>3rhz_A GTF3, nucleotide sugar synthetase-like protein; glycosyltransferase, transferase; HET: UDP; 1.90A {Streptococcus parasanguinis} PDB: 3qkw_A*
Probab=97.88 E-value=4.1e-05 Score=81.00 Aligned_cols=132 Identities=14% Similarity=0.094 Sum_probs=92.4
Q ss_pred CCeEEEecCCCCcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHHHHhc
Q 003891 525 GFITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAY 604 (788)
Q Consensus 525 ~~~~f~~~~~~~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~~~~l~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~ 604 (788)
+.++++-++++.|. ..+..+ .|+.+|+|+|.|... .+ .+|.|.|+++ .++....+
T Consensus 177 ~~~~i~yaG~l~k~--~~L~~l------~~~~~f~ivG~G~~~--------------~l--~nV~f~G~~~-~~el~~~l 231 (339)
T 3rhz_A 177 LKREIHFPGNPERF--SFVKEW------KYDIPLKVYTWQNVE--------------LP--QNVHKINYRP-DEQLLMEM 231 (339)
T ss_dssp EEEEEEECSCTTTC--GGGGGC------CCSSCEEEEESCCCC--------------CC--TTEEEEECCC-HHHHHHHH
T ss_pred CCcEEEEeCCcchh--hHHHhC------CCCCeEEEEeCCccc--------------Cc--CCEEEeCCCC-HHHHHHHH
Confidence 44677888888873 222211 389999999987321 23 2899999998 78888888
Q ss_pred ccccEeecCC-C-------CCCchhHHHHhhhCCceeecCCCccCccchhHHHhhhCCcccccCCHHHHHHHHHHHhcCH
Q 003891 605 SLMDISLDTF-P-------YAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIAKNEDEYVQLALQLASDV 676 (788)
Q Consensus 605 ~~~Dv~Ld~~-~-------~~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l~~~gl~~~ia~~~~~y~~~a~~l~~d~ 676 (788)
+.+|+.|-.. + ++....+.|+|++|+|||+....... .++..-|+ ++++++.++.++....+ ++
T Consensus 232 ~~~~~~lv~~~~~~~~y~~~~~P~Kl~eymA~G~PVI~~~~~~~~-----~~v~~~~~-G~~~~~~~e~~~~i~~l--~~ 303 (339)
T 3rhz_A 232 SQGGFGLVWMDDKDKEYQSLYCSYKLGSFLAAGIPVIVQEGIANQ-----ELIENNGL-GWIVKDVEEAIMKVKNV--NE 303 (339)
T ss_dssp HTEEEEECCCCGGGHHHHTTCCCHHHHHHHHHTCCEEEETTCTTT-----HHHHHHTC-EEEESSHHHHHHHHHHC--CH
T ss_pred HhCCEEEEECCCchhHHHHhcChHHHHHHHHcCCCEEEccChhHH-----HHHHhCCe-EEEeCCHHHHHHHHHHh--CH
Confidence 7777776541 1 34467899999999999985533222 23444344 46678899998888876 46
Q ss_pred HHHHHHHHHHHHH
Q 003891 677 TALANLRMSLRDL 689 (788)
Q Consensus 677 ~~~~~~r~~~~~~ 689 (788)
+.+++|+++.++.
T Consensus 304 ~~~~~m~~na~~~ 316 (339)
T 3rhz_A 304 DEYIELVKNVRSF 316 (339)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 7789999988765
No 269
>1rrv_A Glycosyltransferase GTFD; GT-B, glycosyltransferase, rossmann fold, glycopeptide, VACO antibiotic, transferase-antibiotic complex; HET: OMZ GHP OMY 3FG TYD BGC; 2.00A {Amycolatopsis orientalis} SCOP: c.87.1.5
Probab=97.82 E-value=0.00012 Score=80.20 Aligned_cols=138 Identities=7% Similarity=-0.061 Sum_probs=88.8
Q ss_pred CeEEEecCCCCc-CCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHHHHhc
Q 003891 526 FITFGSFNNLAK-ITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAY 604 (788)
Q Consensus 526 ~~~f~~~~~~~K-~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~~~~l~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~ 604 (788)
.++|.++++... .....++...+.+...+--.+|..|.+.. . . ..+ ++++.+.++++ ..+ .+
T Consensus 238 ~~v~v~~Gs~~~~~~~~~~~~~~~al~~~~~~~v~~~g~~~~--~----~------~~~-~~~v~~~~~~~-~~~---ll 300 (416)
T 1rrv_A 238 PPVHIGFGSSSGRGIADAAKVAVEAIRAQGRRVILSRGWTEL--V----L------PDD-RDDCFAIDEVN-FQA---LF 300 (416)
T ss_dssp CCEEECCTTCCSHHHHHHHHHHHHHHHHTTCCEEEECTTTTC--C----C------SCC-CTTEEEESSCC-HHH---HG
T ss_pred CeEEEecCCCCccChHHHHHHHHHHHHHCCCeEEEEeCCccc--c----c------cCC-CCCEEEeccCC-hHH---Hh
Confidence 567778887643 23344555555555555334444454311 0 0 133 37899999986 444 45
Q ss_pred ccccEeecCCCCCCchhHHHHhhhCCceeecCCCccCccchhHHHhhhCCccccc---CCHHHHHHHHHHHhcCHHHHHH
Q 003891 605 SLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIA---KNEDEYVQLALQLASDVTALAN 681 (788)
Q Consensus 605 ~~~Dv~Ld~~~~~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l~~~gl~~~ia---~~~~~y~~~a~~l~~d~~~~~~ 681 (788)
..||+|+. -+|..|++||+++|||+|+++-.. .....+..+...|..-.+. -+.++..+...++ .|++.+++
T Consensus 301 ~~~d~~v~---~~G~~t~~Ea~~~G~P~i~~p~~~-dQ~~na~~l~~~g~g~~~~~~~~~~~~l~~~i~~l-~~~~~~~~ 375 (416)
T 1rrv_A 301 RRVAAVIH---HGSAGTEHVATRAGVPQLVIPRNT-DQPYFAGRVAALGIGVAHDGPTPTFESLSAALTTV-LAPETRAR 375 (416)
T ss_dssp GGSSEEEE---CCCHHHHHHHHHHTCCEEECCCSB-THHHHHHHHHHHTSEEECSSSCCCHHHHHHHHHHH-TSHHHHHH
T ss_pred ccCCEEEe---cCChhHHHHHHHcCCCEEEccCCC-CcHHHHHHHHHCCCccCCCCCCCCHHHHHHHHHHh-hCHHHHHH
Confidence 77999994 467779999999999999987521 1223445566677765553 3788898888899 99876666
Q ss_pred HHHH
Q 003891 682 LRMS 685 (788)
Q Consensus 682 ~r~~ 685 (788)
+++.
T Consensus 376 ~~~~ 379 (416)
T 1rrv_A 376 AEAV 379 (416)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6543
No 270
>3hbf_A Flavonoid 3-O-glucosyltransferase; glycosyltransferase, GT-B fold, GT1, phenylpropanoid metabolism; HET: UDP MYC; 2.10A {Medicago truncatula} SCOP: c.87.1.0 PDB: 3hbj_A*
Probab=97.81 E-value=0.00027 Score=77.67 Aligned_cols=148 Identities=11% Similarity=0.068 Sum_probs=97.1
Q ss_pred CCCCeEEEecCCCCcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHHHH
Q 003891 523 TNGFITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQ 602 (788)
Q Consensus 523 ~~~~~~f~~~~~~~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~~~~l~~~~~~~gi~~~rv~~~~~~~~~~~~~~ 602 (788)
+++.++|.||++.....++.+...+.-|...+.-.||..+.. ....+-+.+.+. + ++|+.+.++++ +.+.+
T Consensus 271 ~~~~vVyvsfGS~~~~~~~~~~el~~~l~~~~~~flw~~~~~-----~~~~lp~~~~~~-~-~~~~~vv~w~P-q~~vL- 341 (454)
T 3hbf_A 271 ENSSVVYISFGSVVTPPPHELTALAESLEECGFPFIWSFRGD-----PKEKLPKGFLER-T-KTKGKIVAWAP-QVEIL- 341 (454)
T ss_dssp CTTCEEEEECCSSCCCCHHHHHHHHHHHHHHCCCEEEECCSC-----HHHHSCTTHHHH-T-TTTEEEESSCC-HHHHH-
T ss_pred CCCceEEEecCCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCc-----chhcCCHhHHhh-c-CCceEEEeeCC-HHHHH-
Confidence 456889999999988888888888888888777788887653 111121111111 2 37888889987 44444
Q ss_pred hccccc--EeecCCCCCCchhHHHHhhhCCceeecCCCccCccchhHHHhh-hCCccccc---CCHHHHHHHHHHHhcCH
Q 003891 603 AYSLMD--ISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTK-VGLKHLIA---KNEDEYVQLALQLASDV 676 (788)
Q Consensus 603 ~~~~~D--v~Ld~~~~~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l~~-~gl~~~ia---~~~~~y~~~a~~l~~d~ 676 (788)
..+| +|+ ..+|.+|++||+++|||+|+++-. .-....+..+.. +|..-.+. -+.++..+...++..|+
T Consensus 342 --~h~~v~~fv---tH~G~~S~~Eal~~GvP~i~~P~~-~DQ~~Na~~v~~~~g~Gv~l~~~~~~~~~l~~av~~ll~~~ 415 (454)
T 3hbf_A 342 --KHSSVGVFL---THSGWNSVLECIVGGVPMISRPFF-GDQGLNTILTESVLEIGVGVDNGVLTKESIKKALELTMSSE 415 (454)
T ss_dssp --HSTTEEEEE---ECCCHHHHHHHHHHTCCEEECCCS-TTHHHHHHHHHTTSCSEEECGGGSCCHHHHHHHHHHHHSSH
T ss_pred --hhcCcCeEE---ecCCcchHHHHHHcCCCEecCccc-ccHHHHHHHHHHhhCeeEEecCCCCCHHHHHHHHHHHHCCC
Confidence 3355 776 247788999999999999998842 113334455555 46654442 36788887777888774
Q ss_pred HHHHHHHHHH
Q 003891 677 TALANLRMSL 686 (788)
Q Consensus 677 ~~~~~~r~~~ 686 (788)
..+.+|+++
T Consensus 416 -~~~~~r~~a 424 (454)
T 3hbf_A 416 -KGGIMRQKI 424 (454)
T ss_dssp -HHHHHHHHH
T ss_pred -hHHHHHHHH
Confidence 233444444
No 271
>2c1x_A UDP-glucose flavonoid 3-O glycosyltransferase; WINE, catalysis, glycosylation; HET: UDP B3P; 1.9A {Vitis vinifera} SCOP: c.87.1.10 PDB: 2c1z_A* 2c9z_A*
Probab=97.80 E-value=0.00013 Score=80.75 Aligned_cols=151 Identities=15% Similarity=0.081 Sum_probs=98.2
Q ss_pred CCCCeEEEecCCCCcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHHHH
Q 003891 523 TNGFITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQ 602 (788)
Q Consensus 523 ~~~~~~f~~~~~~~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~~~~l~~~~~~~gi~~~rv~~~~~~~~~~~~~~ 602 (788)
+++.++|.||+......++.+...++.+...+.-.+|..|.... +...+.+.++. ++++.+.++++ +.+.+
T Consensus 269 ~~~~vv~vs~GS~~~~~~~~~~~~~~~l~~~~~~~lw~~~~~~~-~~l~~~~~~~~------~~~~~v~~w~p-q~~vL- 339 (456)
T 2c1x_A 269 KPTSVVYISFGTVTTPPPAEVVALSEALEASRVPFIWSLRDKAR-VHLPEGFLEKT------RGYGMVVPWAP-QAEVL- 339 (456)
T ss_dssp CTTCEEEEECCSSCCCCHHHHHHHHHHHHHHTCCEEEECCGGGG-GGSCTTHHHHH------TTTEEEESCCC-HHHHH-
T ss_pred CCcceEEEecCccccCCHHHHHHHHHHHHhcCCeEEEEECCcch-hhCCHHHHhhc------CCceEEecCCC-HHHHh-
Confidence 35678899999887777777776666676666566777664310 01111222221 36888889987 33332
Q ss_pred hcccccEeecCCCCCCchhHHHHhhhCCceeecCCCccCccchhHHHhhh-CCccccc---CCHHHHHHHHHHHhcCHHH
Q 003891 603 AYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKV-GLKHLIA---KNEDEYVQLALQLASDVTA 678 (788)
Q Consensus 603 ~~~~~Dv~Ld~~~~~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l~~~-gl~~~ia---~~~~~y~~~a~~l~~d~~~ 678 (788)
....+|+|+. .+|.+|++||+++|||+|+++-. .-....+..+... |..-.+. -+.++..+...++..|++
T Consensus 340 ~h~~~~~fvt---h~G~~S~~Eal~~GvP~i~~P~~-~dQ~~Na~~l~~~~g~g~~l~~~~~~~~~l~~~i~~ll~~~~- 414 (456)
T 2c1x_A 340 AHEAVGAFVT---HCGWNSLWESVAGGVPLICRPFF-GDQRLNGRMVEDVLEIGVRIEGGVFTKSGLMSCFDQILSQEK- 414 (456)
T ss_dssp TSTTEEEEEE---CCCHHHHHHHHHHTCCEEECCCS-TTHHHHHHHHHHTSCCEEECGGGSCCHHHHHHHHHHHHHSHH-
T ss_pred cCCcCCEEEe---cCCcchHHHHHHhCceEEecCCh-hhHHHHHHHHHHHhCeEEEecCCCcCHHHHHHHHHHHHCCCc-
Confidence 2236899982 48888999999999999999852 2233455566665 7665443 267888888888888875
Q ss_pred HHHHHHHHH
Q 003891 679 LANLRMSLR 687 (788)
Q Consensus 679 ~~~~r~~~~ 687 (788)
...+|++++
T Consensus 415 ~~~~r~~a~ 423 (456)
T 2c1x_A 415 GKKLRENLR 423 (456)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 445555544
No 272
>3h4t_A Glycosyltransferase GTFA, glycosyltransferase; vancomycin, teicoplanin, ORF1, natural products, antibiotic; HET: UDP; 1.15A {Amycolatopsis orientalis} SCOP: c.87.1.5 PDB: 3h4i_A* 1pn3_A* 1pnv_A*
Probab=97.80 E-value=0.00023 Score=77.65 Aligned_cols=158 Identities=8% Similarity=-0.052 Sum_probs=99.1
Q ss_pred CCCeEEEecCCCCcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHHHHh
Q 003891 524 NGFITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQA 603 (788)
Q Consensus 524 ~~~~~f~~~~~~~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~~~~l~~~~~~~gi~~~rv~~~~~~~~~~~~~~~ 603 (788)
+..+++.++++... ..+.++...+.+...+--.+|..|.+. . ...+. +++|.+.++++ ..+.+
T Consensus 220 ~~~~Vlv~~Gs~~~-~~~~~~~~~~al~~~~~~vv~~~g~~~-~-----------~~~~~-~~~v~~~~~~~-~~~ll-- 282 (404)
T 3h4t_A 220 GSPPVYVGFGSGPA-PAEAARVAIEAVRAQGRRVVLSSGWAG-L-----------GRIDE-GDDCLVVGEVN-HQVLF-- 282 (404)
T ss_dssp SSCCEEECCTTSCC-CTTHHHHHHHHHHHTTCCEEEECTTTT-C-----------CCSSC-CTTEEEESSCC-HHHHG--
T ss_pred CCCeEEEECCCCCC-cHHHHHHHHHHHHhCCCEEEEEeCCcc-c-----------ccccC-CCCEEEecCCC-HHHHH--
Confidence 44567888887765 556666666666666544444433221 0 01123 47899999986 44444
Q ss_pred cccccEeecCCCC-CCchhHHHHhhhCCceeecCCCccCccchhHHHhhhCCcccccC---CHHHHHHHHHHHhcCHHHH
Q 003891 604 YSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIAK---NEDEYVQLALQLASDVTAL 679 (788)
Q Consensus 604 ~~~~Dv~Ld~~~~-~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l~~~gl~~~ia~---~~~~y~~~a~~l~~d~~~~ 679 (788)
..||+++ . +|..|+.||+++|||+|.++-. ......+..+...|..-.+.. +.++..+...++.+ ++.+
T Consensus 283 -~~~d~~v----~~gG~~t~~Eal~~GvP~v~~p~~-~dQ~~na~~~~~~G~g~~l~~~~~~~~~l~~ai~~ll~-~~~~ 355 (404)
T 3h4t_A 283 -GRVAAVV----HHGGAGTTTAVTRAGAPQVVVPQK-ADQPYYAGRVADLGVGVAHDGPTPTVESLSAALATALT-PGIR 355 (404)
T ss_dssp -GGSSEEE----ECCCHHHHHHHHHHTCCEEECCCS-TTHHHHHHHHHHHTSEEECSSSSCCHHHHHHHHHHHTS-HHHH
T ss_pred -hhCcEEE----ECCcHHHHHHHHHcCCCEEEcCCc-ccHHHHHHHHHHCCCEeccCcCCCCHHHHHHHHHHHhC-HHHH
Confidence 5699999 5 5557999999999999998632 112234556677787655532 78899999889888 8766
Q ss_pred HHHHHHHHHHhhcCCCCChHHHHHHHHHHH
Q 003891 680 ANLRMSLRDLMSKSPVCDGQNFALGLESTY 709 (788)
Q Consensus 680 ~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~ 709 (788)
+++++..+ .+. . -..++.++.+|+.+
T Consensus 356 ~~~~~~~~-~~~--~-~~~~~~~~~i~~~~ 381 (404)
T 3h4t_A 356 ARAAAVAG-TIR--T-DGTTVAAKLLLEAI 381 (404)
T ss_dssp HHHHHHHT-TCC--C-CHHHHHHHHHHHHH
T ss_pred HHHHHHHH-HHh--h-hHHHHHHHHHHHHH
Confidence 66555432 211 1 23445555555544
No 273
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=97.72 E-value=0.00016 Score=63.36 Aligned_cols=92 Identities=12% Similarity=0.039 Sum_probs=66.5
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHH---HHHHHHHHHHhC-C-CCHHHHHHHHHHHHHcCCHHHHHH
Q 003891 216 NLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDA---AAEMIEKAIAAN-P-TYAEAYNNLGVLYRDAGSISLAID 290 (788)
Q Consensus 216 ~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~e---A~~~l~kal~~~-p-~~~~~~~~la~~~~~~g~~~eA~~ 290 (788)
....+.+.|.+.+..++.+.++.+++|+++.+..+... ++.+++..+... | ..-+.++.||..+.++|+|++|..
T Consensus 16 ~l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~ 95 (126)
T 1nzn_A 16 DLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALK 95 (126)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHH
Confidence 34455666666666666777777777777777766555 777777777665 3 345677888888888888888888
Q ss_pred HHHHHHhhCCCChhhHH
Q 003891 291 AYEQCLKIDPDSRNAGQ 307 (788)
Q Consensus 291 ~~~~al~l~p~~~~a~~ 307 (788)
+++.++++.|+|..+..
T Consensus 96 ~~~~lL~~eP~n~QA~~ 112 (126)
T 1nzn_A 96 YVRGLLQTEPQNNQAKE 112 (126)
T ss_dssp HHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHhCCCCHHHHH
Confidence 88888888888777643
No 274
>2pq6_A UDP-glucuronosyl/UDP-glucosyltransferase; glycosylation, isoflavonoid, uridine diphosphate glycosyltransferase; 2.10A {Medicago truncatula} SCOP: c.87.1.10
Probab=97.70 E-value=0.00038 Score=77.69 Aligned_cols=152 Identities=14% Similarity=0.137 Sum_probs=98.3
Q ss_pred CCCeEEEecCCCCcCCHHHHHHHHHHHhHcCCcEEEEecCCCC-C-H-HHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHH
Q 003891 524 NGFITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFC-C-D-SVRHRFLSTLEQLGLESLRVDLLPLILLNHDH 600 (788)
Q Consensus 524 ~~~~~f~~~~~~~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~-~-~-~~~~~l~~~~~~~gi~~~rv~~~~~~~~~~~~ 600 (788)
+..++|.||++.....+..+...++-+...+.-.+|..+.... + . ...+.+.++. ++++.+.++++ +.+.
T Consensus 294 ~~~vv~vs~GS~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~------~~~~~v~~~~p-q~~~ 366 (482)
T 2pq6_A 294 PGSVVYVNFGSTTVMTPEQLLEFAWGLANCKKSFLWIIRPDLVIGGSVIFSSEFTNEI------ADRGLIASWCP-QDKV 366 (482)
T ss_dssp TTCEEEEECCSSSCCCHHHHHHHHHHHHHTTCEEEEECCGGGSTTTGGGSCHHHHHHH------TTTEEEESCCC-HHHH
T ss_pred CCceEEEecCCcccCCHHHHHHHHHHHHhcCCcEEEEEcCCccccccccCcHhHHHhc------CCCEEEEeecC-HHHH
Confidence 4568899999887667776777777777777666677654310 0 0 0122333322 37888899987 4433
Q ss_pred HHhcccccEeecCCCCCCchhHHHHhhhCCceeecCCCccCccchhHHHh-hhCCccccc--CCHHHHHHHHHHHhcCHH
Q 003891 601 MQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLT-KVGLKHLIA--KNEDEYVQLALQLASDVT 677 (788)
Q Consensus 601 ~~~~~~~Dv~Ld~~~~~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l~-~~gl~~~ia--~~~~~y~~~a~~l~~d~~ 677 (788)
+ ....+|+|+. .+|.+|++||+++|||+|+++-. ......+..+. ..|..-.+. -+.++..+...++..|++
T Consensus 367 L-~h~~~~~~vt---h~G~~s~~Eal~~GvP~i~~P~~-~dQ~~na~~~~~~~G~g~~l~~~~~~~~l~~~i~~ll~~~~ 441 (482)
T 2pq6_A 367 L-NHPSIGGFLT---HCGWNSTTESICAGVPMLCWPFF-ADQPTDCRFICNEWEIGMEIDTNVKREELAKLINEVIAGDK 441 (482)
T ss_dssp H-TSTTEEEEEE---CCCHHHHHHHHHHTCCEEECCCS-TTHHHHHHHHHHTSCCEEECCSSCCHHHHHHHHHHHHTSHH
T ss_pred h-cCCCCCEEEe---cCCcchHHHHHHcCCCEEecCcc-cchHHHHHHHHHHhCEEEEECCCCCHHHHHHHHHHHHcCCc
Confidence 2 2244566872 48888999999999999999853 22334455454 577765553 378888888888888886
Q ss_pred HHHHHHHHHHH
Q 003891 678 ALANLRMSLRD 688 (788)
Q Consensus 678 ~~~~~r~~~~~ 688 (788)
.+.+|+++++
T Consensus 442 -~~~~r~~a~~ 451 (482)
T 2pq6_A 442 -GKKMKQKAME 451 (482)
T ss_dssp -HHHHHHHHHH
T ss_pred -HHHHHHHHHH
Confidence 3555555543
No 275
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=97.56 E-value=0.00073 Score=59.23 Aligned_cols=86 Identities=8% Similarity=-0.038 Sum_probs=39.9
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHH---HHHHHHHHHhhC-C-CCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003891 187 IVFYELAFHFNPHCAEACNNLGVIYKDRDNLDK---AVECYQMALSIK-P-NFSQSLNNLGVVYTVQGKMDAAAEMIEKA 261 (788)
Q Consensus 187 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~e---A~~~~~~al~~~-p-~~~~~~~~la~~~~~~g~~~eA~~~l~ka 261 (788)
.+.|.+.+..++....+.+++|+++.+..+..+ ++.+++..+..+ | ..-+.++.+|..+++.|+|++|..+++.+
T Consensus 21 ~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~l 100 (126)
T 1nzn_A 21 EKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGL 100 (126)
T ss_dssp HHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 333333333334444444444444444443333 444444444433 2 22334555555555555555555555555
Q ss_pred HHhCCCCHHHH
Q 003891 262 IAANPTYAEAY 272 (788)
Q Consensus 262 l~~~p~~~~~~ 272 (788)
++..|++..+.
T Consensus 101 L~~eP~n~QA~ 111 (126)
T 1nzn_A 101 LQTEPQNNQAK 111 (126)
T ss_dssp HHHCTTCHHHH
T ss_pred HHhCCCCHHHH
Confidence 55555554443
No 276
>2acv_A Triterpene UDP-glucosyl transferase UGT71G1; glycosyltransferase; HET: UDP; 2.00A {Medicago truncatula} SCOP: c.87.1.10 PDB: 2acw_A*
Probab=97.45 E-value=0.0022 Score=71.01 Aligned_cols=139 Identities=14% Similarity=0.091 Sum_probs=89.2
Q ss_pred CCCeEEEecCCCC-cCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHHHH
Q 003891 524 NGFITFGSFNNLA-KITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQ 602 (788)
Q Consensus 524 ~~~~~f~~~~~~~-K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~~~~l~~~~~~~gi~~~rv~~~~~~~~~~~~~~ 602 (788)
++.++|.||++.. .++++.+...++-|...+.-.+|..+.+ .+...+.+.++... ++++.+.++++ +.+.+
T Consensus 275 ~~~vv~vs~GS~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~--~~~l~~~~~~~~~~----~~~~~v~~w~p-q~~vL- 346 (463)
T 2acv_A 275 DKSVVFLCFGSMGVSFGPSQIREIALGLKHSGVRFLWSNSAE--KKVFPEGFLEWMEL----EGKGMICGWAP-QVEVL- 346 (463)
T ss_dssp TTCEEEEECCSSCCCCCHHHHHHHHHHHHHHTCEEEEECCCC--GGGSCTTHHHHHHH----HCSEEEESSCC-HHHHH-
T ss_pred CCceEEEEeccccccCCHHHHHHHHHHHHhCCCcEEEEECCC--cccCChhHHHhhcc----CCCEEEEccCC-HHHHh-
Confidence 4568899999888 7787777777777777666666776642 00011122222210 25778888887 33332
Q ss_pred hcccccEeecCCCCCCchhHHHHhhhCCceeecCCCccCccchhHH-HhhhCCccccc---------CCHHHHHHHHHHH
Q 003891 603 AYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSL-LTKVGLKHLIA---------KNEDEYVQLALQL 672 (788)
Q Consensus 603 ~~~~~Dv~Ld~~~~~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~-l~~~gl~~~ia---------~~~~~y~~~a~~l 672 (788)
....+|+|+. -+|.+|++||+++|||+|+++-. ......+.. ....|..-.+. -+.++..+...++
T Consensus 347 ~h~~~~~fvt---h~G~~s~~Eal~~GvP~i~~P~~-~dQ~~Na~~lv~~~g~g~~l~~~~~~~~~~~~~~~l~~ai~~l 422 (463)
T 2acv_A 347 AHKAIGGFVS---HCGWNSILESMWFGVPILTWPIY-AEQQLNAFRLVKEWGVGLGLRVDYRKGSDVVAAEEIEKGLKDL 422 (463)
T ss_dssp HSTTEEEEEE---CCCHHHHHHHHHTTCCEEECCCS-TTHHHHHHHHHHTSCCEEESCSSCCTTCCCCCHHHHHHHHHHH
T ss_pred CCCccCeEEe---cCCchhHHHHHHcCCCeeeccch-hhhHHHHHHHHHHcCeEEEEecccCCCCccccHHHHHHHHHHH
Confidence 2346899982 48888999999999999999852 122334455 36777765551 2567777777777
Q ss_pred hc
Q 003891 673 AS 674 (788)
Q Consensus 673 ~~ 674 (788)
.+
T Consensus 423 l~ 424 (463)
T 2acv_A 423 MD 424 (463)
T ss_dssp TC
T ss_pred Hh
Confidence 76
No 277
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=97.39 E-value=0.0024 Score=57.12 Aligned_cols=108 Identities=11% Similarity=0.071 Sum_probs=75.1
Q ss_pred CCCCHHHHHHHHHHHHHcCCH------HHHHHHHHHHHhhCCCC--------HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003891 197 NPHCAEACNNLGVIYKDRDNL------DKAVECYQMALSIKPNF--------SQSLNNLGVVYTVQGKMDAAAEMIEKAI 262 (788)
Q Consensus 197 ~p~~~~~~~~la~~~~~~g~~------~eA~~~~~~al~~~p~~--------~~~~~~la~~~~~~g~~~eA~~~l~kal 262 (788)
.|.+++.|........+.|+. ++-++.|++|+..-|.. ...|...|.. ...++.++|.+.|+.++
T Consensus 9 ~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~a~ 87 (161)
T 4h7y_A 9 MANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEPDDARDYFQMAR 87 (161)
T ss_dssp -CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHHHH
Confidence 455566666666655555665 55666666666554432 2345555544 45578888888888888
Q ss_pred HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhh
Q 003891 263 AANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNA 305 (788)
Q Consensus 263 ~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~a 305 (788)
++....+.+|...|+...++|+..+|.+.+.+++.+.|.....
T Consensus 88 ~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~ 130 (161)
T 4h7y_A 88 ANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEM 130 (161)
T ss_dssp HHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHH
T ss_pred HHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHH
Confidence 8877778888888888888888888888888888888875543
No 278
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=97.39 E-value=0.002 Score=57.70 Aligned_cols=109 Identities=17% Similarity=0.119 Sum_probs=93.4
Q ss_pred hCCCCHHHHHHHHHHHHHcCCh------HHHHHHHHHHHhcCCC--------CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003891 162 YNWHYADAMYNLGVAYGEMLKF------DMAIVFYELAFHFNPH--------CAEACNNLGVIYKDRDNLDKAVECYQMA 227 (788)
Q Consensus 162 ~~p~~~~~~~~la~~~~~~g~~------~~A~~~~~~al~~~p~--------~~~~~~~la~~~~~~g~~~eA~~~~~~a 227 (788)
..|++++.|........+.|+. ++-++.|++++..-|. ....|...|.. ...++.++|.+.|+.+
T Consensus 8 ~~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~a 86 (161)
T 4h7y_A 8 MMANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEPDDARDYFQMA 86 (161)
T ss_dssp --CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHHH
T ss_pred eCCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHHH
Confidence 5789999999999999988999 8999999999987654 24566667755 5669999999999999
Q ss_pred HhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 003891 228 LSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEA 271 (788)
Q Consensus 228 l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~ 271 (788)
++++...+.+|...|..-..+|+..+|.+.+.+++.+.|...+.
T Consensus 87 ~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~ 130 (161)
T 4h7y_A 87 RANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEM 130 (161)
T ss_dssp HHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHH
T ss_pred HHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHH
Confidence 99988889999999999999999999999999999999886554
No 279
>2vch_A Hydroquinone glucosyltransferase; glycosyltransferase, N-glucosyltransferase, UDP-glucose- dependent, plant glycosyltransferase; HET: UDP; 1.45A {Arabidopsis thaliana} SCOP: c.87.1.10 PDB: 2vce_A* 2vg8_A*
Probab=97.24 E-value=0.0033 Score=69.91 Aligned_cols=137 Identities=18% Similarity=0.100 Sum_probs=87.1
Q ss_pred CCCeEEEecCCCCcCCHHHHHHHHHHHhHcCCcEEEEecCCCC------------C---HHHHHHHHHHHHHcCCCCCc-
Q 003891 524 NGFITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFC------------C---DSVRHRFLSTLEQLGLESLR- 587 (788)
Q Consensus 524 ~~~~~f~~~~~~~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~------------~---~~~~~~l~~~~~~~gi~~~r- 587 (788)
++.++|.||++.....++.+...++-+...+.-.||.++.+.. . +...+++.++. . +|
T Consensus 267 ~~~vvyvs~GS~~~~~~~~~~~~~~al~~~~~~~lw~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~-----~-~~g 340 (480)
T 2vch_A 267 LGSVLYVSFGSGGTLTCEQLNELALGLADSEQRFLWVIRSPSGIANSSYFDSHSQTDPLTFLPPGFLERT-----K-KRG 340 (480)
T ss_dssp TTCEEEEECTTTCCCCHHHHHHHHHHHHHTTCEEEEEECCCCSSTTTTTTCC--CSCGGGGSCTTHHHHT-----T-TTE
T ss_pred CCceEEEecccccCCCHHHHHHHHHHHHhcCCcEEEEECCccccccccccccccccchhhhcCHHHHHHh-----C-CCe
Confidence 4568899999988788888888888888877777777764321 0 01122333221 2 33
Q ss_pred EEEcCCcCCcHHHHHhccccc--EeecCCCCCCchhHHHHhhhCCceeecCCCccCccchhHHH-hhhCCccccc-----
Q 003891 588 VDLLPLILLNHDHMQAYSLMD--ISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLL-TKVGLKHLIA----- 659 (788)
Q Consensus 588 v~~~~~~~~~~~~~~~~~~~D--v~Ld~~~~~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l-~~~gl~~~ia----- 659 (788)
+++.+++| +.+. +..+| +|+ ..+|.+|++||+++|||+|+++-. .-....+..+ ..+|+.-.+.
T Consensus 341 ~~v~~w~P-q~~v---L~h~~v~~fv---tHgG~~S~~Eal~~GvP~i~~P~~-~DQ~~na~~l~~~~G~g~~l~~~~~~ 412 (480)
T 2vch_A 341 FVIPFWAP-QAQV---LAHPSTGGFL---THCGWNSTLESVVSGIPLIAWPLY-AEQKMNAVLLSEDIRAALRPRAGDDG 412 (480)
T ss_dssp EEEESCCC-HHHH---HHSTTEEEEE---ECCCHHHHHHHHHHTCCEEECCCS-TTHHHHHHHHHHTTCCEECCCCCTTS
T ss_pred EEEeCccC-HHHH---hCCCCcCeEE---ecccchhHHHHHHcCCCEEecccc-ccchHHHHHHHHHhCeEEEeecccCC
Confidence 34445876 4443 44455 566 247888999999999999999852 2233444454 5667654442
Q ss_pred -CCHHHHHHHHHHHhc
Q 003891 660 -KNEDEYVQLALQLAS 674 (788)
Q Consensus 660 -~~~~~y~~~a~~l~~ 674 (788)
-+.++..+...++..
T Consensus 413 ~~~~~~l~~av~~vl~ 428 (480)
T 2vch_A 413 LVRREEVARVVKGLME 428 (480)
T ss_dssp CCCHHHHHHHHHHHHT
T ss_pred ccCHHHHHHHHHHHhc
Confidence 256777777777776
No 280
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=97.09 E-value=0.004 Score=57.06 Aligned_cols=132 Identities=17% Similarity=0.089 Sum_probs=80.6
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcC---CCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC---CCHH
Q 003891 169 AMYNLGVAYGEMLKFDMAIVFYELAFHFN---PHC------AEACNNLGVIYKDRDNLDKAVECYQMALSIKP---NFSQ 236 (788)
Q Consensus 169 ~~~~la~~~~~~g~~~~A~~~~~~al~~~---p~~------~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p---~~~~ 236 (788)
+++.-...+...|.|+.|+-....++... ++- ..++..+|..++..++|..|...|+++++... ....
T Consensus 22 ~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s 101 (167)
T 3ffl_A 22 NVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSK 101 (167)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC-----
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 45566677788888988888888866553 331 34778888888888888888888888876532 1111
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhhHHhHHHHhhh
Q 003891 237 SLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNY 315 (788)
Q Consensus 237 ~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~a~~~~lla~~~ 315 (788)
....++. ... ...... .+.+.+..+.++.||.++|++++|+..++.. -+.......|++++..|
T Consensus 102 ~~~~~~~----~ss-------~p~s~~-~~~e~Elkykia~C~~~l~~~~~Ai~~Le~I---p~k~Rt~kvnm~LakLy 165 (167)
T 3ffl_A 102 VRPSTGN----SAS-------TPQSQC-LPSEIEVKYKLAECYTVLKQDKDAIAILDGI---PSRQRTPKINMLLANLY 165 (167)
T ss_dssp --------------------------C-CCCHHHHHHHHHHHHHHTTCHHHHHHHHHTS---CGGGCCHHHHHHHHHHC
T ss_pred ccccccc----cCC-------Cccccc-ccchHHHHHHHHHHHHHHCCHHHHHHHHhcC---CchhcCHHHHHHHHHHh
Confidence 1001100 000 000011 1334678888999999999999999887653 23334455666666554
No 281
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=96.94 E-value=0.012 Score=52.44 Aligned_cols=76 Identities=12% Similarity=0.089 Sum_probs=64.8
Q ss_pred CCCHHHHHHHHHHHHHcCCH---HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhhHH
Q 003891 232 PNFSQSLNNLGVVYTVQGKM---DAAAEMIEKAIAANPT-YAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQ 307 (788)
Q Consensus 232 p~~~~~~~~la~~~~~~g~~---~eA~~~l~kal~~~p~-~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~a~~ 307 (788)
....++.+++|+++.+..+. .+++.+++..+...|. .-+.++.||..+.++|+|++|..+.+.+++..|+|..+..
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~ 115 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA 115 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHH
Confidence 45678889999999887754 4788899999988884 5678899999999999999999999999999999988753
No 282
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=96.92 E-value=0.0056 Score=56.09 Aligned_cols=92 Identities=14% Similarity=0.035 Sum_probs=75.9
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhCCCC---------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------C--
Q 003891 27 LTDLGTSLKLAGNTQDGIQKYYEALKIDPHY---------APAYYNLGVVYSELMQYDTALGCYEKAALER------P-- 89 (788)
Q Consensus 27 l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---------~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~------p-- 89 (788)
++.....++..|.|+.|+-....++....++ ..++..+|..++..++|..|...|+++++.. +
T Consensus 23 l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~ 102 (167)
T 3ffl_A 23 VIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKV 102 (167)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC------
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 6677788899999999999999977764322 3488999999999999999999999997631 1
Q ss_pred -----------------CCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q 003891 90 -----------------MYAEAYCNMGVIYKNRGDLESAIACYERC 118 (788)
Q Consensus 90 -----------------~~~~~~~~la~~~~~~g~~~~A~~~~~~a 118 (788)
...++.+.++.||.+.+++++|+..++..
T Consensus 103 ~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~I 148 (167)
T 3ffl_A 103 RPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGI 148 (167)
T ss_dssp --------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTS
T ss_pred cccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcC
Confidence 11268899999999999999999998764
No 283
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=96.73 E-value=0.37 Score=54.73 Aligned_cols=124 Identities=9% Similarity=-0.044 Sum_probs=83.6
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhcCCCCHH----HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Q 003891 173 LGVAYGEMLKFDMAIVFYELAFHFNPHCAE----ACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQ 248 (788)
Q Consensus 173 la~~~~~~g~~~~A~~~~~~al~~~p~~~~----~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~ 248 (788)
.+.......+.+.|...+.+..+...-+.. ....++.-+...+...++...+.+......+ ......++......
T Consensus 220 ~~~~rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~e~~~r~Alr~ 298 (618)
T 1qsa_A 220 VAFASVARQDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQS-TSLIERRVRMALGT 298 (618)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCC-HHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccCCC-hHHHHHHHHHHHHC
Confidence 344445556888999988877554332322 2223333333445466777788776654443 33333444445577
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 003891 249 GKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLK 297 (788)
Q Consensus 249 g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~ 297 (788)
|+++.|..++++.-..........+.+|..+..+|+.++|..+|+++.+
T Consensus 299 ~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 299 GDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp TCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 9999999999876554445678899999999999999999999999975
No 284
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=96.67 E-value=0.012 Score=51.75 Aligned_cols=75 Identities=12% Similarity=0.090 Sum_probs=59.9
Q ss_pred CCHHHHHHHHHHHHHcCCH---HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhhHH
Q 003891 233 NFSQSLNNLGVVYTVQGKM---DAAAEMIEKAIAANPT-YAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQ 307 (788)
Q Consensus 233 ~~~~~~~~la~~~~~~g~~---~eA~~~l~kal~~~p~-~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~a~~ 307 (788)
-.+.+.+++|+++.+..+. .+++.+++..++..|. .-+.++.||..+.++|+|++|..+.+.++++.|+|..+..
T Consensus 38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~ 116 (134)
T 3o48_A 38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA 116 (134)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHH
T ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHH
Confidence 3567888888888877654 4688888888888774 4678888888899999999999999999999998887754
No 285
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=96.53 E-value=0.49 Score=54.72 Aligned_cols=112 Identities=13% Similarity=0.062 Sum_probs=76.2
Q ss_pred HHHHHHHHHHcCCCChhhHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHh--------CCCC----------HHHHHH
Q 003891 2 LVASYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKI--------DPHY----------APAYYN 63 (788)
Q Consensus 2 Ai~~~~kaL~~~P~~~~a~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~--------~p~~----------~~~~~~ 63 (788)
|++.+++..+.+|..... ++.++.. .......+--+|++...+.++. .+.+ ...+..
T Consensus 268 a~~~le~L~~~~p~~~~~---~~~~~i~--~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~LL~~ 342 (754)
T 4gns_B 268 TIDYLKGLTKKDPIHDIY---YKTAMIT--ILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSARLMNCMSDLLNI 342 (754)
T ss_dssp HHHHHHHHHHHCGGGHHH---HHHHHHH--HHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhCCchhHH---HHHHHHH--HHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccccccCcchHHHHH
Confidence 456677777777654321 1111111 1111112334677777777642 2222 234556
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q 003891 64 LGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERC 118 (788)
Q Consensus 64 lg~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 118 (788)
.+..+...|+|+-|+++.++++...|.....|+.|+.+|..+|+|+.|+-.++.+
T Consensus 343 Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 343 QTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 6777888999999999999999999999999999999999999999999877665
No 286
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=96.52 E-value=0.077 Score=47.18 Aligned_cols=76 Identities=8% Similarity=-0.033 Sum_probs=66.9
Q ss_pred CCCHHHHHHHHHHHHHcCCH---HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHH
Q 003891 55 PHYAPAYYNLGVVYSELMQY---DTALGCYEKAALERPM-YAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKN 130 (788)
Q Consensus 55 p~~~~~~~~lg~~~~~~g~~---~~A~~~~~kal~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 130 (788)
.-...+.+++|.++....+. .+++.+++..+...|. .-++++.+|..+++.|+|++|.++.+.+++..|++..+..
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~ 115 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA 115 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHH
Confidence 45788999999999988765 5799999999998884 5789999999999999999999999999999999976543
No 287
>1psw_A ADP-heptose LPS heptosyltransferase II; structural genomics, NYSGXRC, LPS biosynthetic pathway, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.87.1.7
Probab=96.32 E-value=0.02 Score=60.55 Aligned_cols=100 Identities=10% Similarity=-0.000 Sum_probs=60.0
Q ss_pred CCcCCH--HHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcC--CCCCcEEEcCCcCCcHHHHHhcccccEe
Q 003891 535 LAKITP--KVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLG--LESLRVDLLPLILLNHDHMQAYSLMDIS 610 (788)
Q Consensus 535 ~~K~~~--~~~~~~~~il~~~p~~~l~l~~~~~~~~~~~~~l~~~~~~~g--i~~~rv~~~~~~~~~~~~~~~~~~~Dv~ 610 (788)
..|.-| .+.++...+.++ +.++++.|.+ ..++...+..+..+ ....-+.+.|... ..+..+.++.||++
T Consensus 193 ~~k~wp~~~~~~l~~~L~~~--~~~vvl~g~~----~e~~~~~~i~~~~~~~~~~~~~~l~g~~s-l~e~~ali~~a~l~ 265 (348)
T 1psw_A 193 PAKRWPHYHYAELAKQLIDE--GYQVVLFGSA----KDHEAGNEILAALNTEQQAWCRNLAGETQ-LDQAVILIAACKAI 265 (348)
T ss_dssp GGGSCCHHHHHHHHHHHHHT--TCEEEECCCG----GGHHHHHHHHTTSCHHHHTTEEECTTTSC-HHHHHHHHHTSSEE
T ss_pred ccCCCCHHHHHHHHHHHHHC--CCeEEEEeCh----hhHHHHHHHHHhhhhccccceEeccCcCC-HHHHHHHHHhCCEE
Confidence 456665 444444334333 6788887765 22322222221111 0112345667654 68899999999999
Q ss_pred ecCCCCCCchhHHHHhhhCCceeecCCCccCccch
Q 003891 611 LDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVG 645 (788)
Q Consensus 611 Ld~~~~~g~~t~~eal~~GvPvvt~~g~~~~~r~~ 645 (788)
+-.- .|+..+ |.++|+|+|++-|.+...|.+
T Consensus 266 I~~D---sg~~Hl-Aaa~g~P~v~lfg~t~~~~~~ 296 (348)
T 1psw_A 266 VTND---SGLMHV-AAALNRPLVALYGPSSPDFTP 296 (348)
T ss_dssp EEES---SHHHHH-HHHTTCCEEEEESSSCTTSSC
T ss_pred EecC---CHHHHH-HHHcCCCEEEEECCCCccccC
Confidence 8432 344444 888999999999987766654
No 288
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=96.28 E-value=0.034 Score=48.79 Aligned_cols=74 Identities=8% Similarity=-0.017 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHcCCH---HHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 003891 201 AEACNNLGVIYKDRDNL---DKAVECYQMALSIKPN-FSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNN 274 (788)
Q Consensus 201 ~~~~~~la~~~~~~g~~---~eA~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~ 274 (788)
..+.+++|+++.+..+. .+++.+++..++.+|. .-+.++.+|..+.+.|+|++|.++.+.+++..|++..+...
T Consensus 40 ~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~L 117 (134)
T 3o48_A 40 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGAL 117 (134)
T ss_dssp HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHHH
T ss_pred hhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHHH
Confidence 45555566555555433 3456666666655553 34566666666666666666666666666666666554433
No 289
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=95.95 E-value=0.45 Score=50.66 Aligned_cols=94 Identities=14% Similarity=-0.002 Sum_probs=68.9
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhcCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC---CCCH----HH
Q 003891 171 YNLGVAYGEMLKFDMAIVFYELAFHFNPH------CAEACNNLGVIYKDRDNLDKAVECYQMALSIK---PNFS----QS 237 (788)
Q Consensus 171 ~~la~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~---p~~~----~~ 237 (788)
..+|..|+..|+|.+|.+.+.+..+.-.. ..+++..-..+|...+++.++...|.++.... +.++ ..
T Consensus 103 ~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i 182 (394)
T 3txn_A 103 ARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGAL 182 (394)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHH
Confidence 47888899999999998888887764211 24567777788888899999998888886552 1222 24
Q ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHh
Q 003891 238 LNNLGVVYT-VQGKMDAAAEMIEKAIAA 264 (788)
Q Consensus 238 ~~~la~~~~-~~g~~~eA~~~l~kal~~ 264 (788)
...-|..+. ..++|.+|...|-++++.
T Consensus 183 ~~~~Gi~~l~~~rdyk~A~~~F~eaf~~ 210 (394)
T 3txn_A 183 DLQSGILHAADERDFKTAFSYFYEAFEG 210 (394)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHhccCHHHHHHHHHHHHhc
Confidence 455677777 789999998888888754
No 290
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=95.75 E-value=0.47 Score=55.96 Aligned_cols=97 Identities=12% Similarity=0.035 Sum_probs=55.6
Q ss_pred HHcCCHHHHHH-HHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhcC
Q 003891 69 SELMQYDTALG-CYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEG 147 (788)
Q Consensus 69 ~~~g~~~~A~~-~~~kal~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~g 147 (788)
...+++++|.+ .+.. -+ +......+...+...|.+++|++..+ ++...+. .....|
T Consensus 610 ~~~~~~~~a~~~~l~~----i~-~~~~~~~~~~~l~~~~~~~~a~~~~~--------~~~~~f~----------~~l~~~ 666 (814)
T 3mkq_A 610 TLRGEIEEAIENVLPN----VE-GKDSLTKIARFLEGQEYYEEALNISP--------DQDQKFE----------LALKVG 666 (814)
T ss_dssp HHTTCHHHHHHHTGGG----CC-CHHHHHHHHHHHHHTTCHHHHHHHCC--------CHHHHHH----------HHHHHT
T ss_pred HHhCCHHHHHHHHHhc----CC-chHHHHHHHHHHHhCCChHHheecCC--------Ccchhee----------hhhhcC
Confidence 45677777655 3310 01 01122555666667777777665442 1111111 112245
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 003891 148 DINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELA 193 (788)
Q Consensus 148 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 193 (788)
++++|.+..+. .++...|..+|..+.+.++++.|+++|.++
T Consensus 667 ~~~~A~~~~~~-----~~~~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 667 QLTLARDLLTD-----ESAEMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp CHHHHHHHHTT-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHh-----hCcHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 77777776542 356677888888888888888888888765
No 291
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=95.74 E-value=0.17 Score=53.93 Aligned_cols=167 Identities=11% Similarity=0.021 Sum_probs=116.5
Q ss_pred HHHHHHhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHH-----HHHHHHHHHH-cCChHHHHHHHHHHHhcCCCC--H--H
Q 003891 133 AIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADA-----MYNLGVAYGE-MLKFDMAIVFYELAFHFNPHC--A--E 202 (788)
Q Consensus 133 a~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~-----~~~la~~~~~-~g~~~~A~~~~~~al~~~p~~--~--~ 202 (788)
-.+...+|..|...|+.++-.+++......-+.-+.+ ...+-..+.. .+..+.-++.+.++++...+. . .
T Consensus 19 e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr 98 (394)
T 3txn_A 19 EQGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLR 98 (394)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566778888888999999888887765543333222 2233333322 244555666666666542222 1 2
Q ss_pred --HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC--C----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCC---
Q 003891 203 --ACNNLGVIYKDRDNLDKAVECYQMALSIKPN--F----SQSLNNLGVVYTVQGKMDAAAEMIEKAIAAN---PTY--- 268 (788)
Q Consensus 203 --~~~~la~~~~~~g~~~eA~~~~~~al~~~p~--~----~~~~~~la~~~~~~g~~~eA~~~l~kal~~~---p~~--- 268 (788)
.-..+|.+|...|+|.+|.+.+.+..+.... + .+++..-..+|...+++.++...+.++.... +.+
T Consensus 99 ~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i 178 (394)
T 3txn_A 99 QSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKV 178 (394)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHH
Confidence 3348999999999999999999988875222 1 3467777889999999999999999997653 122
Q ss_pred -HHHHHHHHHHHH-HcCCHHHHHHHHHHHHhhC
Q 003891 269 -AEAYNNLGVLYR-DAGSISLAIDAYEQCLKID 299 (788)
Q Consensus 269 -~~~~~~la~~~~-~~g~~~eA~~~~~~al~l~ 299 (788)
+.....-|..+. ..++|.+|..+|-++++-.
T Consensus 179 ~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f 211 (394)
T 3txn_A 179 QGALDLQSGILHAADERDFKTAFSYFYEAFEGF 211 (394)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHhccCHHHHHHHHHHHHhcc
Confidence 344566788888 8999999999999987543
No 292
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=95.68 E-value=0.071 Score=61.65 Aligned_cols=115 Identities=14% Similarity=0.038 Sum_probs=81.1
Q ss_pred cCC-hHHHHHHHHHHHhcCCCCHHHHHHHHHHHH--H-cCCHHHHHHHHHHHHhh--------CCCC----------HHH
Q 003891 180 MLK-FDMAIVFYELAFHFNPHCAEACNNLGVIYK--D-RDNLDKAVECYQMALSI--------KPNF----------SQS 237 (788)
Q Consensus 180 ~g~-~~~A~~~~~~al~~~p~~~~~~~~la~~~~--~-~g~~~eA~~~~~~al~~--------~p~~----------~~~ 237 (788)
.++ ++.|+..+++..+.+|.....+ ..+.+.. . ..+--+|+..+.++++. .+.+ ...
T Consensus 261 t~~~~~~a~~~le~L~~~~p~~~~~~-~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~L 339 (754)
T 4gns_B 261 TPSLVDFTIDYLKGLTKKDPIHDIYY-KTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSARLMNCMSDL 339 (754)
T ss_dssp CGGGHHHHHHHHHHHHHHCGGGHHHH-HHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhhCCchhHHH-HHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccccccCcchHH
Confidence 444 5778888888877777653322 2222211 1 12344566666666632 2222 235
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003891 238 LNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQC 295 (788)
Q Consensus 238 ~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~a 295 (788)
+...+..+...|+++-|+++.++++...|.....|+.|+.+|..+|+++.|+-.+..+
T Consensus 340 L~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 340 LNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 5566778888999999999999999999999999999999999999999999777665
No 293
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=95.43 E-value=1.5 Score=39.87 Aligned_cols=126 Identities=17% Similarity=0.133 Sum_probs=80.9
Q ss_pred HHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHH
Q 003891 35 KLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIAC 114 (788)
Q Consensus 35 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 114 (788)
++-.+|+.++-+-.-. -|..++.-..++.+++-.|.|..|+-.+.+ -+.....+..+.||...+++.+|+..
T Consensus 13 ~kY~dYdt~~fLsa~L---~~~~~eY~lL~~I~LyyngEY~R~Lf~L~~-----lNT~Ts~YYk~LCy~klKdYkkA~~~ 84 (242)
T 3kae_A 13 IRYRDYETAIFLAACL---LPCKPEYRMLMSIVLYLNGEYTRALFHLHK-----LNTCTSKYYESLCYKKKKDYKKAIKS 84 (242)
T ss_dssp HHTTCHHHHHHHHHHH---C----CTHHHHHHHHHHTTCHHHHHHHHHT-----CCBHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hhcccccHHHHHHHHH---ccCChHHHhhhhhhhhhcchHhHHHHHHHh-----cchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3446777665433322 344456667788899999999999887653 35577788889999999999999999
Q ss_pred HHHHHhh--C--CCc-HHHH------HHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHhCCCCHH
Q 003891 115 YERCLAV--S--PNF-EIAK------NNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYAD 168 (788)
Q Consensus 115 ~~~al~~--~--p~~-~~~~------~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~ 168 (788)
+++.++- + |+- .... ...-..+..+|.+....|+.++|+.++.......+-.+.
T Consensus 85 le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~~~lf~~ 149 (242)
T 3kae_A 85 LESILEGKVERDPDVDARIQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGKSFLFSP 149 (242)
T ss_dssp HHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHH
T ss_pred HHHHHhcccccCcccccccceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCCccccch
Confidence 9999932 2 221 1000 000123344555556667888888888887777665443
No 294
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=95.23 E-value=1.7 Score=39.46 Aligned_cols=95 Identities=19% Similarity=0.183 Sum_probs=76.4
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----------------CCCC
Q 003891 29 DLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALE-----------------RPMY 91 (788)
Q Consensus 29 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~-----------------~p~~ 91 (788)
.++..++-.|.|..++-.+.+ -+...+.+..+.||...++|.+|+..+++.++- +|.+
T Consensus 38 L~~I~LyyngEY~R~Lf~L~~-----lNT~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~D 112 (242)
T 3kae_A 38 LMSIVLYLNGEYTRALFHLHK-----LNTCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGD 112 (242)
T ss_dssp HHHHHHHHTTCHHHHHHHHHT-----CCBHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTC
T ss_pred hhhhhhhhcchHhHHHHHHHh-----cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccch
Confidence 356667778999888776643 355778888999999999999999999999841 2334
Q ss_pred HH-HHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHH
Q 003891 92 AE-AYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIA 128 (788)
Q Consensus 92 ~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 128 (788)
.+ .+..+|.++.+.|+-++|+.++.......+-.+..
T Consensus 113 kEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~~~lf~~v 150 (242)
T 3kae_A 113 EEFFESLLGDLCTLSGYREEGIGHYVRSFGKSFLFSPV 150 (242)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHhhhHhhhhcCCccccchH
Confidence 33 56778999999999999999999999998876543
No 295
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=95.20 E-value=0.79 Score=53.94 Aligned_cols=97 Identities=13% Similarity=0.080 Sum_probs=49.1
Q ss_pred HHcCChHHHHH-HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHH
Q 003891 35 KLAGNTQDGIQ-KYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIA 113 (788)
Q Consensus 35 ~~~g~~~~A~~-~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g~~~~A~~ 113 (788)
...+++++|.+ ++.. -+ +......+...+...|.+++|++..+ ++..- .......|++++|.+
T Consensus 610 ~~~~~~~~a~~~~l~~----i~-~~~~~~~~~~~l~~~~~~~~a~~~~~--------~~~~~---f~~~l~~~~~~~A~~ 673 (814)
T 3mkq_A 610 TLRGEIEEAIENVLPN----VE-GKDSLTKIARFLEGQEYYEEALNISP--------DQDQK---FELALKVGQLTLARD 673 (814)
T ss_dssp HHTTCHHHHHHHTGGG----CC-CHHHHHHHHHHHHHTTCHHHHHHHCC--------CHHHH---HHHHHHHTCHHHHHH
T ss_pred HHhCCHHHHHHHHHhc----CC-chHHHHHHHHHHHhCCChHHheecCC--------Ccchh---eehhhhcCCHHHHHH
Confidence 45677777766 3310 11 01122455556666777776665442 12111 223455677777766
Q ss_pred HHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHH
Q 003891 114 CYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKA 159 (788)
Q Consensus 114 ~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~a 159 (788)
..+.. ++...| ..+|..+.+.++++.|+++|.++
T Consensus 674 ~~~~~-----~~~~~W-------~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 674 LLTDE-----SAEMKW-------RALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHTTC-----CCHHHH-------HHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHhh-----CcHhHH-------HHHHHHHHHcCCHHHHHHHHHHc
Confidence 64321 233333 33444444466777777766654
No 296
>3tov_A Glycosyl transferase family 9; structural genomics, PSI-BIOL protein structure initiative, midwest center for structural genomics, MCSG; 2.98A {Veillonella parvula}
Probab=94.97 E-value=0.027 Score=59.71 Aligned_cols=98 Identities=14% Similarity=0.102 Sum_probs=60.5
Q ss_pred CcCCH-HHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHHHHhcccccEeecCC
Q 003891 536 AKITP-KVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTF 614 (788)
Q Consensus 536 ~K~~~-~~~~~~~~il~~~p~~~l~l~~~~~~~~~~~~~l~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~~Dv~Ld~~ 614 (788)
.|.=| +.+...++.|.+. +.++++.|++ ..++..++..+..+ ..-+.+.|... -.+..+.++.||+++-.
T Consensus 198 ~k~wp~~~~~~l~~~l~~~-g~~vvl~g~~----~e~~~~~~i~~~~~--~~~~~l~g~~s-l~e~~ali~~a~~~i~~- 268 (349)
T 3tov_A 198 EKRWPAERFAHVADYFGRL-GYKTVFFGGP----MDLEMVQPVVEQME--TKPIVATGKFQ-LGPLAAAMNRCNLLITN- 268 (349)
T ss_dssp GGCCCHHHHHHHHHHHHHH-TCEEEECCCT----TTHHHHHHHHHTCS--SCCEECTTCCC-HHHHHHHHHTCSEEEEE-
T ss_pred cCCCCHHHHHHHHHHHHhC-CCeEEEEeCc----chHHHHHHHHHhcc--cccEEeeCCCC-HHHHHHHHHhCCEEEEC-
Confidence 55543 3343334444333 5677777765 23333333333333 23466777655 67899999999999832
Q ss_pred CCCCchhHHHHhhhCCceeecCCCccCccch
Q 003891 615 PYAGTTTTCESLYMGVPCVTMAGSVHAHNVG 645 (788)
Q Consensus 615 ~~~g~~t~~eal~~GvPvvt~~g~~~~~r~~ 645 (788)
-.|+.-+ |.++|+|+|++-|.+...+.+
T Consensus 269 --DsG~~Hl-Aaa~g~P~v~lfg~t~p~~~~ 296 (349)
T 3tov_A 269 --DSGPMHV-GISQGVPIVALYGPSNPFFYG 296 (349)
T ss_dssp --SSHHHHH-HHTTTCCEEEECSSCCHHHHS
T ss_pred --CCCHHHH-HHhcCCCEEEEECCCCccccC
Confidence 2455555 889999999999987765543
No 297
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.86 E-value=2.1 Score=46.50 Aligned_cols=52 Identities=4% Similarity=-0.051 Sum_probs=36.2
Q ss_pred cCChHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 003891 37 AGNTQDGIQKYYEALKI------DPHYAPAYYNLGVVYSELMQYDTALGCYEKAALER 88 (788)
Q Consensus 37 ~g~~~~A~~~~~~al~~------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~ 88 (788)
.|++++|++.+...-+. .+....+...+..++...++++...+.+.-..+..
T Consensus 29 ~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr 86 (445)
T 4b4t_P 29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKH 86 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTT
T ss_pred cCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHh
Confidence 36788888877554443 23356778888889999999988877765544433
No 298
>2gt1_A Lipopolysaccharide heptosyltransferase-1; GT-B fold; 1.90A {Escherichia coli UTI89} PDB: 2h1f_A* 2h1h_A*
Probab=94.57 E-value=0.06 Score=56.26 Aligned_cols=95 Identities=14% Similarity=0.226 Sum_probs=56.5
Q ss_pred CcCCHHHHHHHHHHHhHc--CCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHHHHhcccccEeecC
Q 003891 536 AKITPKVLQVWARILCAV--PNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDT 613 (788)
Q Consensus 536 ~K~~~~~~~~~~~il~~~--p~~~l~l~~~~~~~~~~~~~l~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~~Dv~Ld~ 613 (788)
.|.=|. +-|+++.+.. .+.++++.+++ +..++...+ +.+ +.. .+.+.|... -.+..+.++.||+++-.
T Consensus 191 ~k~wp~--~~~~~l~~~L~~~~~~vvl~~g~---~~e~~~~~~-i~~-~~~--~~~l~g~~s-l~el~ali~~a~l~I~~ 260 (326)
T 2gt1_A 191 DKHWPE--EHWRELIGLLADSGIRIKLPWGA---PHEEERAKR-LAE-GFA--YVEVLPKMS-LEGVARVLAGAKFVVSV 260 (326)
T ss_dssp GGSCCH--HHHHHHHHHTTTTCCEEEECCSS---HHHHHHHHH-HHT-TCT--TEEECCCCC-HHHHHHHHHTCSEEEEE
T ss_pred cccCCH--HHHHHHHHHHHHCCCcEEEecCC---HHHHHHHHH-HHh-hCC--cccccCCCC-HHHHHHHHHhCCEEEec
Confidence 455442 4444444443 36677776332 133333333 322 222 356777655 68899999999999822
Q ss_pred CCCCCchhHHHHhhhCCceeecCCCccCccc
Q 003891 614 FPYAGTTTTCESLYMGVPCVTMAGSVHAHNV 644 (788)
Q Consensus 614 ~~~~g~~t~~eal~~GvPvvt~~g~~~~~r~ 644 (788)
-.|+.-+ |.++|+|+|++-|.+...+.
T Consensus 261 ---DSG~~Hl-Aaa~g~P~v~lfg~t~p~~~ 287 (326)
T 2gt1_A 261 ---DTGLSHL-TAALDRPNITVYGPTDPGLI 287 (326)
T ss_dssp ---SSHHHHH-HHHTTCCEEEEESSSCHHHH
T ss_pred ---CCcHHHH-HHHcCCCEEEEECCCChhhc
Confidence 1455555 66699999999887755544
No 299
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=94.55 E-value=0.94 Score=42.06 Aligned_cols=102 Identities=16% Similarity=0.062 Sum_probs=70.2
Q ss_pred HHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 003891 177 YGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAE 256 (788)
Q Consensus 177 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~ 256 (788)
..+.|+++.|.+..++. ++...|..+|......|+++-|..+|+++-. +..+..+|...|+.++-.+
T Consensus 15 AL~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D--------~~~L~~Ly~~tg~~e~L~k 81 (177)
T 3mkq_B 15 ALEYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQHS--------FDKLSFLYLVTGDVNKLSK 81 (177)
T ss_dssp HHHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC--------HHHHHHHHHHHTCHHHHHH
T ss_pred HHhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC--------HHHHHHHHHHhCCHHHHHH
Confidence 35678888888877655 5677888888888888888888888887632 2344555666777766665
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003891 257 MIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCL 296 (788)
Q Consensus 257 ~l~kal~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al 296 (788)
..+.+..... +.....++..+|+++++++.|.+.-
T Consensus 82 la~iA~~~g~-----~n~af~~~l~lGdv~~~i~lL~~~~ 116 (177)
T 3mkq_B 82 MQNIAQTRED-----FGSMLLNTFYNNSTKERSSIFAEGG 116 (177)
T ss_dssp HHHHHHHTTC-----HHHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred HHHHHHHCcc-----HHHHHHHHHHcCCHHHHHHHHHHCC
Confidence 5555544332 2233455677888888888887653
No 300
>3hbm_A UDP-sugar hydrolase; PSEG; 1.80A {Campylobacter jejuni subsp} PDB: 3hbn_A*
Probab=94.37 E-value=0.13 Score=52.23 Aligned_cols=86 Identities=7% Similarity=-0.018 Sum_probs=54.4
Q ss_pred EEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHHHHhcccccEeecCCCCCCchhHHHHhhhCCceeecC
Q 003891 557 RLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMA 636 (788)
Q Consensus 557 ~l~l~~~~~~~~~~~~~l~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~~Dv~Ld~~~~~g~~t~~eal~~GvPvvt~~ 636 (788)
..++.|.+. +..+++++..+.. .++.+.+.+. +....+..+|+++. .||+|+.|++++|+|+|..+
T Consensus 186 i~vv~G~~~---~~~~~l~~~~~~~----~~v~v~~~~~---~m~~~m~~aDlvI~----~gG~T~~E~~~~g~P~i~ip 251 (282)
T 3hbm_A 186 ISIATSSSN---PNLKKLQKFAKLH----NNIRLFIDHE---NIAKLMNESNKLII----SASSLVNEALLLKANFKAIC 251 (282)
T ss_dssp EEEEECTTC---TTHHHHHHHHHTC----SSEEEEESCS---CHHHHHHTEEEEEE----ESSHHHHHHHHTTCCEEEEC
T ss_pred EEEEECCCc---hHHHHHHHHHhhC----CCEEEEeCHH---HHHHHHHHCCEEEE----CCcHHHHHHHHcCCCEEEEe
Confidence 334445442 3456666655442 3688888765 44556666999996 35689999999999998865
Q ss_pred CCccCccchhHHHhhhCCccc
Q 003891 637 GSVHAHNVGVSLLTKVGLKHL 657 (788)
Q Consensus 637 g~~~~~r~~~~~l~~~gl~~~ 657 (788)
-... .+..+..|...|...+
T Consensus 252 ~~~~-Q~~nA~~l~~~G~~~~ 271 (282)
T 3hbm_A 252 YVKN-QESTATWLAKKGYEVE 271 (282)
T ss_dssp CSGG-GHHHHHHHHHTTCEEE
T ss_pred CCCC-HHHHHHHHHHCCCEEE
Confidence 3221 3345555666665543
No 301
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=94.23 E-value=1.5 Score=40.67 Aligned_cols=45 Identities=18% Similarity=0.042 Sum_probs=29.6
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q 003891 69 SELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERC 118 (788)
Q Consensus 69 ~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 118 (788)
.+.|+++.|.+..++. ++...|..+|......|+++-|+++|+++
T Consensus 16 L~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~ 60 (177)
T 3mkq_B 16 LEYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQ 60 (177)
T ss_dssp HHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred HhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHh
Confidence 3566777776665543 45666777777777777777777776665
No 302
>2jzc_A UDP-N-acetylglucosamine transferase subunit ALG13; rossmann-like fold, endoplasmic reticulum, glycosyltransferase, structural genomics; NMR {Saccharomyces cerevisiae} PDB: 2ks6_A
Probab=94.21 E-value=0.11 Score=50.67 Aligned_cols=62 Identities=15% Similarity=0.159 Sum_probs=43.2
Q ss_pred cEEEcCCcCCcHHHHHhcc-cccEeecCCCC-CCchhHHHHhhhCCceeecCCCccC---ccchhHHHhhhCCc
Q 003891 587 RVDLLPLILLNHDHMQAYS-LMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHA---HNVGVSLLTKVGLK 655 (788)
Q Consensus 587 rv~~~~~~~~~~~~~~~~~-~~Dv~Ld~~~~-~g~~t~~eal~~GvPvvt~~g~~~~---~r~~~~~l~~~gl~ 655 (788)
++...+.++ +....+. .||+++ . +|..|++|++++|+|.|..+..... ....|..|...|..
T Consensus 115 ~v~v~~f~~---~m~~~l~~~AdlvI----shaGagTv~Eal~~G~P~IvVP~~~~~~~HQ~~nA~~l~~~G~~ 181 (224)
T 2jzc_A 115 KVIGFDFST---KMQSIIRDYSDLVI----SHAGTGSILDSLRLNKPLIVCVNDSLMDNHQQQIADKFVELGYV 181 (224)
T ss_dssp EEEECCSSS---SHHHHHHHHCSCEE----ESSCHHHHHHHHHTTCCCCEECCSSCCCCHHHHHHHHHHHHSCC
T ss_pred eEEEeeccc---hHHHHHHhcCCEEE----ECCcHHHHHHHHHhCCCEEEEcCcccccchHHHHHHHHHHCCCE
Confidence 556667655 3445556 699998 5 7888999999999999998875322 22235566666764
No 303
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=93.80 E-value=0.94 Score=44.95 Aligned_cols=121 Identities=10% Similarity=-0.028 Sum_probs=68.3
Q ss_pred HHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 003891 177 YGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAE 256 (788)
Q Consensus 177 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~ 256 (788)
+.+.|+.++|++..+..++.+|.+......+..+++-.|+++.|.+-++.+.+++|+.......+-.+. .|..
T Consensus 7 ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI-------~aE~ 79 (273)
T 1zbp_A 7 ALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLV-------KAAQ 79 (273)
T ss_dssp HTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHH-------HHHH
T ss_pred HHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHH-------HHHH
Confidence 345566666666666666666666666666666666666666666666666666666433221111100 0111
Q ss_pred HHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChh
Q 003891 257 MIEKAIAA--------NPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRN 304 (788)
Q Consensus 257 ~l~kal~~--------~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~ 304 (788)
.=++.+.- .|........-+......|+.++|.+.-.++++..|....
T Consensus 80 ~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~~~G 135 (273)
T 1zbp_A 80 ARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGF 135 (273)
T ss_dssp HHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCE
T ss_pred HHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCcccCC
Confidence 11111110 1111223333455566789999999999999999887654
No 304
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=93.66 E-value=0.95 Score=44.92 Aligned_cols=61 Identities=18% Similarity=0.239 Sum_probs=50.8
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 003891 210 IYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAE 270 (788)
Q Consensus 210 ~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~ 270 (788)
.+.+.|+.++|++..+..++.+|.+......+..++.-.|+++.|.+-++.+.+++|+...
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~ 66 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLP 66 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHH
T ss_pred HHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhH
Confidence 3456788888888888888888888888888888888888888888888888888887643
No 305
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=93.31 E-value=8.4 Score=43.58 Aligned_cols=251 Identities=10% Similarity=-0.039 Sum_probs=155.2
Q ss_pred HHHHHHHHcCCCChhhHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 003891 4 ASYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEK 83 (788)
Q Consensus 4 ~~~~kaL~~~P~~~~a~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~k 83 (788)
..++..|+.+|+.+.........+..++ +.+++..-+..|.. .|.+...-..........|+-.+|....++
T Consensus 56 ~ev~~Fl~~~~~~p~~~~Lr~~~l~~l~----~~~~w~~~l~~~~~----~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~ 127 (618)
T 1qsa_A 56 VTVTNFVRANPTLPPARTLQSRFVNELA----RREDWRGLLAFSPE----KPGTTEAQCNYYYAKWNTGQSEEAWQGAKE 127 (618)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHHH----HTTCHHHHHHHCCS----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHCCCChhHHHHHHHHHHHHH----hCCCHHHHHHhccC----CCCCHHHHHHHHHHHHHcCChhHHHHHHHH
Confidence 3567888999999887666655555543 36778777765543 378888888888888999998888887777
Q ss_pred HHHhCCC------------------CHHHHHHHHHHHHHCCCHHHHHHHHHHH-------------HhhCCCcHHHHHH-
Q 003891 84 AALERPM------------------YAEAYCNMGVIYKNRGDLESAIACYERC-------------LAVSPNFEIAKNN- 131 (788)
Q Consensus 84 al~~~p~------------------~~~~~~~la~~~~~~g~~~~A~~~~~~a-------------l~~~p~~~~~~~~- 131 (788)
+...... ...-+.......+..|+...|....... +..+|........
T Consensus 128 lW~~~~~~p~~c~~l~~~~~~~g~lt~~~~~~R~~~al~~~~~~~a~~l~~~l~~~~~~~a~~~~al~~~p~~~~~~~~~ 207 (618)
T 1qsa_A 128 LWLTGKSQPNACDKLFSVWRASGKQDPLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANNPNTVLTFART 207 (618)
T ss_dssp HHSCSSCCCTHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred HHhCCCCCcHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHhCCHHHHHHHHHHHHHHhChHhHHHHHhc
Confidence 6543222 2233444445566666666665443321 1123332211100
Q ss_pred -----HHHHHHHhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHH----HHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHH
Q 003891 132 -----MAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADA----MYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAE 202 (788)
Q Consensus 132 -----la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~----~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 202 (788)
...-....+.......+.+.|...+.+..+...-+... ...++.-+...+...++...+.+......++.
T Consensus 208 ~~~~~~~~~~~~~~~~rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~- 286 (618)
T 1qsa_A 208 TGATDFTRQMAAVAFASVARQDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQSTS- 286 (618)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCCHH-
T ss_pred cCCChhhHHHHHHHHHHHHhcCHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccCCChH-
Confidence 00011111222233457888888888776544333332 22233333344436677777777665444433
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003891 203 ACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIA 263 (788)
Q Consensus 203 ~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~ 263 (788)
....++....+.|+++.|..++++.-..........+-+|.++...|+.++|..+|+++..
T Consensus 287 ~~e~~~r~Alr~~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 287 LIERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 3334444455779999999999876554445678899999999999999999999999975
No 306
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.20 E-value=11 Score=40.75 Aligned_cols=187 Identities=10% Similarity=-0.045 Sum_probs=102.0
Q ss_pred CCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhh
Q 003891 72 MQYDTALGCYEKAALE------RPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKL 145 (788)
Q Consensus 72 g~~~~A~~~~~kal~~------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~ 145 (788)
+++++|++.+....+. .+....+...+..++...++++...+++.-..........+...+...... ....
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~~---~l~~ 106 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVME---YLKS 106 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHHHH---HHHH
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH---HHhc
Confidence 5677888776444332 233577888899999999999998887766555444333322222111110 0011
Q ss_pred cCCHHHHHHHHHHHHHhC----CC-------CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC--C----CHHHHHHHH
Q 003891 146 EGDINQGVAYYKKALYYN----WH-------YADAMYNLGVAYGEMLKFDMAIVFYELAFHFNP--H----CAEACNNLG 208 (788)
Q Consensus 146 ~g~~~~A~~~~~~al~~~----p~-------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~----~~~~~~~la 208 (788)
....+. +.....++.- .+ .......++.+|...|++.+|...+.....-.- . -.+.+....
T Consensus 107 ~~~~d~--~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~ 184 (445)
T 4b4t_P 107 SKSLDL--NTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQM 184 (445)
T ss_dssp HCTTHH--HHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHH
T ss_pred CCchhH--HHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 111111 1111122111 00 123456677777777777777777776653211 1 145566666
Q ss_pred HHHHHcCCHHHHHHHHHHHHh---hCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003891 209 VIYKDRDNLDKAVECYQMALS---IKPNFS----QSLNNLGVVYTVQGKMDAAAEMIEKAIA 263 (788)
Q Consensus 209 ~~~~~~g~~~eA~~~~~~al~---~~p~~~----~~~~~la~~~~~~g~~~eA~~~l~kal~ 263 (788)
.++...+++.+|...++++.. ..+..+ ..+...|.++...++|.+|..+|..++.
T Consensus 185 rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 185 ELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 777777777777777776532 122222 2445566666677777777666666654
No 307
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=93.16 E-value=1.6 Score=46.65 Aligned_cols=92 Identities=14% Similarity=0.087 Sum_probs=63.7
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHhCCCC----------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003891 28 TDLGTSLKLAGNTQDGIQKYYEALKIDPHY----------------------APAYYNLGVVYSELMQYDTALGCYEKAA 85 (788)
Q Consensus 28 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~----------------------~~~~~~lg~~~~~~g~~~~A~~~~~kal 85 (788)
...|......|+.++|...+.+++.+.... ..+...++..+...|++.+|+..+++++
T Consensus 119 ~~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~l~~~~ 198 (388)
T 2ff4_A 119 KTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEALT 198 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 334455556789999999999999874221 1123345556667777777777777777
Q ss_pred HhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q 003891 86 LERPMYAEAYCNMGVIYKNRGDLESAIACYERCL 119 (788)
Q Consensus 86 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 119 (788)
..+|.+..++..+..++...|+..+|++.|+++-
T Consensus 199 ~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r 232 (388)
T 2ff4_A 199 FEHPYREPLWTQLITAYYLSDRQSDALGAYRRVK 232 (388)
T ss_dssp HHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 7777777777777777777777777777776654
No 308
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=92.65 E-value=0.79 Score=50.48 Aligned_cols=81 Identities=26% Similarity=0.319 Sum_probs=68.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH
Q 003891 59 PAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTD 138 (788)
Q Consensus 59 ~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~ 138 (788)
..+..+|.+......++.|..+|.+|..+.|.+...++.||.+....|+.-+|+-+|-+++......+.+..++...+..
T Consensus 153 r~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~~ 232 (497)
T 1ya0_A 153 HCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSK 232 (497)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Confidence 36778898888888899999999999999999999999999999999999999999999988877788888887776654
Q ss_pred h
Q 003891 139 L 139 (788)
Q Consensus 139 l 139 (788)
.
T Consensus 233 ~ 233 (497)
T 1ya0_A 233 A 233 (497)
T ss_dssp H
T ss_pred H
Confidence 3
No 309
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=92.50 E-value=1.2 Score=47.57 Aligned_cols=111 Identities=14% Similarity=0.037 Sum_probs=75.0
Q ss_pred HHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHH-HHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHH
Q 003891 174 GVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKA-VECYQMALSIKPNFSQSLNNLGVVYTVQGKMD 252 (788)
Q Consensus 174 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA-~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 252 (788)
|......|+.+.|...+++++.+.....-.- .. ...+-.+ ...+++.. ..+...++..+...|++.
T Consensus 122 ~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~--~~-----~~~w~~~~r~~l~~~~------~~a~~~~~~~~l~~g~~~ 188 (388)
T 2ff4_A 122 GVHAAAAGRFEQASRHLSAALREWRGPVLDD--LR-----DFQFVEPFATALVEDK------VLAHTAKAEAEIACGRAS 188 (388)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCCSSTTGG--GT-----TSTTHHHHHHHHHHHH------HHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhcCCCCCCC--CC-----chhHHHHHHHHHHHHH------HHHHHHHHHHHHHCCCHH
Confidence 3344456788888888888887743321000 00 0111111 11121111 124456777888999999
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 003891 253 AAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLK 297 (788)
Q Consensus 253 eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~ 297 (788)
+|+..+++++..+|-+..++..+..++...|+..+|++.|+++.+
T Consensus 189 ~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~ 233 (388)
T 2ff4_A 189 AVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT 233 (388)
T ss_dssp HHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999988754
No 310
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=92.39 E-value=0.57 Score=51.62 Aligned_cols=79 Identities=22% Similarity=0.261 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 003891 203 ACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRD 281 (788)
Q Consensus 203 ~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~ 281 (788)
.+..+|.+......++.|..+|.+|..+.|++...++.+|.+....|+.-+|+-+|-+++......+.+..++..++.+
T Consensus 154 ~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~~ 232 (497)
T 1ya0_A 154 CLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSK 232 (497)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Confidence 5566777777777778888888888888888888888888888888888888888888877766677777777776654
No 311
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=91.75 E-value=2.4 Score=50.20 Aligned_cols=98 Identities=7% Similarity=-0.067 Sum_probs=82.1
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhc----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHH
Q 003891 168 DAMYNLGVAYGEMLKFDMAIVFYELAFHF----NPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIK-PNFSQSLNNLG 242 (788)
Q Consensus 168 ~~~~~la~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~la 242 (788)
..+..+-..|.+.|+.++|.+.|.+..+. ..-+...|+.+...|++.|+.++|.++|++..+.. .-+...|..+-
T Consensus 128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI 207 (1134)
T 3spa_A 128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAAL 207 (1134)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHH
Confidence 36788899999999999999999775432 23458899999999999999999999999998763 34677888888
Q ss_pred HHHHHcCC-HHHHHHHHHHHHHhC
Q 003891 243 VVYTVQGK-MDAAAEMIEKAIAAN 265 (788)
Q Consensus 243 ~~~~~~g~-~~eA~~~l~kal~~~ 265 (788)
.++.+.|+ .++|.+++++..+..
T Consensus 208 ~glcK~G~~~e~A~~Ll~EM~~kG 231 (1134)
T 3spa_A 208 QCMGRQDQDAGTIERCLEQMSQEG 231 (1134)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHHT
T ss_pred HHHHhCCCcHHHHHHHHHHHHHcC
Confidence 89999998 578999999998864
No 312
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=91.67 E-value=4.9 Score=49.40 Aligned_cols=139 Identities=12% Similarity=-0.016 Sum_probs=74.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhh
Q 003891 63 NLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTK 142 (788)
Q Consensus 63 ~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~~ 142 (788)
.+...+...++++-+.+ .+...+.++...+.+|.++...|++++|..+|+++-.--......
T Consensus 817 ~l~~~l~~~~~~~~~~~----l~~~~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l-------------- 878 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQ----LIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQ-------------- 878 (1139)
T ss_dssp HHHHHHHHHSCTTHHHH----HHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCS--------------
T ss_pred HHHHHHHHhhhHHHHHH----HhhhccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchh--------------
Confidence 34455666677665544 344567777778899999999999999999998874321110000
Q ss_pred hhhcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC-CCH----HHHHHHHHHHHHc
Q 003891 143 VKLEGDINQGVAYYKKALY---YNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNP-HCA----EACNNLGVIYKDR 214 (788)
Q Consensus 143 ~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~----~~~~~la~~~~~~ 214 (788)
.....+ ...... ........|..+..++.+.+.++.+++..+.|++..+ ++. ..|.++-..+...
T Consensus 879 ---~~~~~~----~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l 951 (1139)
T 4fhn_B 879 ---FAVLRE----FQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAA 951 (1139)
T ss_dssp ---CSSHHH----HHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHH
T ss_pred ---hhhhcc----cccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhh
Confidence 000000 000011 1111233444555556666666666666666665432 221 2455555556666
Q ss_pred CCHHHHHHHHHH
Q 003891 215 DNLDKAVECYQM 226 (788)
Q Consensus 215 g~~~eA~~~~~~ 226 (788)
|+|++|...+..
T Consensus 952 ~~ye~Ay~aL~~ 963 (1139)
T 4fhn_B 952 GKFDAAHVALMV 963 (1139)
T ss_dssp CCSGGGGHHHHH
T ss_pred CCHHHHHHHHHh
Confidence 666666555543
No 313
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=91.59 E-value=6.7 Score=46.28 Aligned_cols=274 Identities=12% Similarity=0.094 Sum_probs=145.5
Q ss_pred HcCChHHHHHHHHHHHHhC-CCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---C---CH----HHHHHHHH
Q 003891 36 LAGNTQDGIQKYYEALKID-PHY----APAYYNLGVVYSELMQYDTALGCYEKAALERP---M---YA----EAYCNMGV 100 (788)
Q Consensus 36 ~~g~~~~A~~~~~~al~~~-p~~----~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p---~---~~----~~~~~la~ 100 (788)
..|+.++++..+.+.+... .++ ..+.+.+|.++...+ ++++.++...+..+. . .. -+-..||.
T Consensus 386 h~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~--~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGl 463 (963)
T 4ady_A 386 HKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFG--RDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGL 463 (963)
T ss_dssp TSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTT--HHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHH
T ss_pred ccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCc--HHHHHHHHHHHcCccccccccccHHHHHHHHHHHHH
Confidence 4467777777777665422 122 345666666665554 467887777776432 0 11 24456777
Q ss_pred HHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 003891 101 IYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEM 180 (788)
Q Consensus 101 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 180 (788)
++...++ +++.+.+...+..+.. ... ..+-..+|.++.-.|+-+-....+..+.+...+...-...+|..+...
T Consensus 464 a~~GS~~-eev~e~L~~~L~dd~~--~~~---~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~ 537 (963)
T 4ady_A 464 AAMGSAN-IEVYEALKEVLYNDSA--TSG---EAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINY 537 (963)
T ss_dssp HSTTCCC-HHHHHHHHHHHHTCCH--HHH---HHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTT
T ss_pred HhcCCCC-HHHHHHHHHHHhcCCH--HHH---HHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhC
Confidence 7766665 4566777777654332 111 123345666666677766666666655543322222223344445566
Q ss_pred CChHHHHHHHHHHHhcCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 003891 181 LKFDMAIVFYELAFHFNPHC--AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMI 258 (788)
Q Consensus 181 g~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l 258 (788)
|+.+.+....+......... ..+...+|..|...|+...-.+++..+..-..++..-..-+|..+...|+.+.+...+
T Consensus 538 g~~e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~~e~v~rlv 617 (963)
T 4ady_A 538 GRQELADDLITKMLASDESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDYTTVPRIV 617 (963)
T ss_dssp TCGGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSCSSHHHHT
T ss_pred CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCCcHHHHHHHHHHHHhhccCCHHHHHHHH
Confidence 77776666666554432111 1233456777778888655555666665433222222222233333345543333333
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCCChhhHHhHHHHhhhccCCCch
Q 003891 259 EKAIAANPTYAEAYNNLGVLYRD----AGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDD 322 (788)
Q Consensus 259 ~kal~~~p~~~~~~~~la~~~~~----~g~~~eA~~~~~~al~l~p~~~~a~~~~lla~~~l~~g~~~ 322 (788)
+...+ ..++.+.+..+.++-. .++ .+++..+.+... ++ +..++.+-.+++..+..|..+
T Consensus 618 ~~L~~--~~d~~VR~gAalALGli~aGn~~-~~aid~L~~L~~-D~-d~~Vrq~Ai~ALG~Ig~gtnn 680 (963)
T 4ady_A 618 QLLSK--SHNAHVRCGTAFALGIACAGKGL-QSAIDVLDPLTK-DP-VDFVRQAAMIALSMILIQQTE 680 (963)
T ss_dssp TTGGG--CSCHHHHHHHHHHHHHHTSSSCC-HHHHHHHHHHHT-CS-SHHHHHHHHHHHHHHSTTCCT
T ss_pred HHHHh--cCCHHHHHHHHHHHHHhccCCCc-HHHHHHHHHHcc-CC-CHHHHHHHHHHHHHHhcCCcc
Confidence 32222 2345555544443333 343 678888887753 33 466667777777777766544
No 314
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=91.30 E-value=3.5 Score=48.94 Aligned_cols=100 Identities=6% Similarity=-0.112 Sum_probs=83.0
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHH
Q 003891 24 AIVLTDLGTSLKLAGNTQDGIQKYYEALKI----DPHYAPAYYNLGVVYSELMQYDTALGCYEKAALER-PMYAEAYCNM 98 (788)
Q Consensus 24 a~~l~~lg~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~-p~~~~~~~~l 98 (788)
-..|..+-..+.+.|+.++|.++|.+..+. -.-+...|..+...|.+.|+.++|.++|+++.+.. .-+...|..+
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 345778888999999999999999776432 23468899999999999999999999999998753 2357888999
Q ss_pred HHHHHHCCC-HHHHHHHHHHHHhhCC
Q 003891 99 GVIYKNRGD-LESAIACYERCLAVSP 123 (788)
Q Consensus 99 a~~~~~~g~-~~~A~~~~~~al~~~p 123 (788)
..++.+.|+ .++|.+++++..+..-
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG~ 232 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEGL 232 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCC
Confidence 999999997 5789999999988643
No 315
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.19 E-value=0.62 Score=50.56 Aligned_cols=104 Identities=13% Similarity=0.000 Sum_probs=68.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHH
Q 003891 58 APAYYNLGVVYSELMQYDTALGCYEKAALERP---MYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAI 134 (788)
Q Consensus 58 ~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 134 (788)
..++..+|..|...|++++|.+.|.++..... ...+.+.....++...+++..+..+++++........+ +...+.
T Consensus 131 ~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d-~~~~~~ 209 (429)
T 4b4t_R 131 AQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGD-WERRNR 209 (429)
T ss_dssp SSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCC-THHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCC-HHHHHH
Confidence 44677888888888888888888888776432 23567777788888888888888888887654322110 111223
Q ss_pred HHHHhhhhhhhcCCHHHHHHHHHHHHHh
Q 003891 135 ALTDLGTKVKLEGDINQGVAYYKKALYY 162 (788)
Q Consensus 135 ~l~~lg~~~~~~g~~~~A~~~~~~al~~ 162 (788)
.....|.++...++|.+|..+|..++..
T Consensus 210 lk~~~gl~~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 210 YKTYYGIHCLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp HHHHHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhChHHHHHHHHHHHhcc
Confidence 3334455555667777777776666544
No 316
>2gj4_A Glycogen phosphorylase, muscle form; transferase; HET: PLR 2TH; 1.60A {Oryctolagus cuniculus} SCOP: c.87.1.4 PDB: 2gm9_A* 1abb_A* 3nc4_A* 3l79_A* 2pyd_A* 2pyi_A* 3l7a_A* 3l7b_A* 3l7c_A* 3l7d_A* 2qnb_A* 1c8l_A* 1axr_A* 1gpy_A* 1e1y_A* 1lwo_A* 1pyg_A* 1uzu_A* 1lwn_A* 1xkx_A* ...
Probab=91.13 E-value=1.2 Score=51.58 Aligned_cols=112 Identities=15% Similarity=0.032 Sum_probs=70.0
Q ss_pred CCeEEEecCCC--CcCCHHH-HHHHHHHH--hHcC-----CcEEEEecCCCCCHHHHHHHHHHHHHcC--------CCCC
Q 003891 525 GFITFGSFNNL--AKITPKV-LQVWARIL--CAVP-----NSRLVVKCKPFCCDSVRHRFLSTLEQLG--------LESL 586 (788)
Q Consensus 525 ~~~~f~~~~~~--~K~~~~~-~~~~~~il--~~~p-----~~~l~l~~~~~~~~~~~~~l~~~~~~~g--------i~~~ 586 (788)
+.+++|-+-|+ +|...-. +....+++ ...| ..++++.|++.........+.+.+.+.. +. +
T Consensus 549 d~l~~g~vkRl~eYKRq~L~~l~~i~~~~~i~~~~~~~~~p~q~If~GKA~P~y~~aK~iIkli~~va~~in~Dp~v~-~ 627 (824)
T 2gj4_A 549 NSLFDVQVKRIHEYKRQLLNCLHVITLYNRIKKEPNKFVVPRTVMIGGKAAPGYHMAKMIIKLITAIGDVVNHDPVVG-D 627 (824)
T ss_dssp TSEEEEEESCCCGGGTHHHHHHHHHHHHHHHHHCTTSCCCCEEEEEECCCCTTCHHHHHHHHHHHHHHHHHTTCTTTG-G
T ss_pred CcceEeeeecchhhcchhhHHHHHHHHHHHHHhCCCCCCCCEEEEEEEeCCHhHHHHHHHHHHHHHHHHHhccCcccC-C
Confidence 45677777777 8877554 44444443 2344 4678888877543334434444443321 22 6
Q ss_pred --cEEEcCCcCCcHHHHHhcccccEeecCCC--C-CCchhHHHHhhhCCc-eeecCCC
Q 003891 587 --RVDLLPLILLNHDHMQAYSLMDISLDTFP--Y-AGTTTTCESLYMGVP-CVTMAGS 638 (788)
Q Consensus 587 --rv~~~~~~~~~~~~~~~~~~~Dv~Ld~~~--~-~g~~t~~eal~~GvP-vvt~~g~ 638 (788)
+|+|++.-. ..--...+..|||+|-|+- + ..||+-+=||.-|++ ++|+.|.
T Consensus 628 ~lKVvFl~nYd-vslA~~I~~gaDv~l~~S~ag~EAsGTs~MKamlNGaLtigtlDGa 684 (824)
T 2gj4_A 628 RLRVIFLENYR-VSLAEKVIPAADLSEQISTAGTEASGTGNMKFMLNGALTIGTMDGA 684 (824)
T ss_dssp GEEEEEETTCC-HHHHHHHGGGCSEEEECCCTTSCSCCSHHHHHHHTTCEEEECSCTT
T ss_pred ceEEEEECCCC-HHHHHHHhhhcceeecCCCCCCCCCchHHHHHHHcCceEEEEecCc
Confidence 899987632 2222236799999999995 7 778888888888854 6676664
No 317
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.02 E-value=0.35 Score=52.90 Aligned_cols=127 Identities=13% Similarity=0.078 Sum_probs=59.3
Q ss_pred HHHHcCChHHHHHHHHHHHh--c---------CCCCHHHHHHHHHHHHHcCCHHHHH----------HHHHHHHhh----
Q 003891 176 AYGEMLKFDMAIVFYELAFH--F---------NPHCAEACNNLGVIYKDRDNLDKAV----------ECYQMALSI---- 230 (788)
Q Consensus 176 ~~~~~g~~~~A~~~~~~al~--~---------~p~~~~~~~~la~~~~~~g~~~eA~----------~~~~~al~~---- 230 (788)
.+...+++++|.++-...+. . +.-.+.+|+.++.++...|+..+.. ..+-.++..
T Consensus 145 ~L~d~k~~~~~~~~~~~~~~~~~l~~~nrrtlD~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~~~rta~lr 224 (523)
T 4b4t_S 145 FLWDSKELEQLVEFNRKVVIPNLLCYYNLRSLNLINAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMKFLKIASLK 224 (523)
T ss_dssp ----------------------------------------------------------CHHHHHHHHTHHHHHHHHCCSC
T ss_pred HHhccccHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhcc
Confidence 34566777777776655441 1 2224566777777777777665432 222233322
Q ss_pred -CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 003891 231 -KPN-FSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTY-------AEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPD 301 (788)
Q Consensus 231 -~p~-~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~-------~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~ 301 (788)
+.. ....++.+-..|...+.|++|..+..++. .|.. ...++.+|.++.-+++|.+|.+++..|+...|.
T Consensus 225 ~D~~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~ 302 (523)
T 4b4t_S 225 HDNETKAMLINLILRDFLNNGEVDSASDFISKLE--YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPH 302 (523)
T ss_dssp SSSCHHHHHHHHHHHHHHHSSCSTTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSC
T ss_pred cCcchhHHHHHHHHHHHHccCcHHHHHHHHhcCc--CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCc
Confidence 221 14467778888999999999999999884 4432 456778999999999999999999999998887
Q ss_pred Chh
Q 003891 302 SRN 304 (788)
Q Consensus 302 ~~~ 304 (788)
+..
T Consensus 303 ~~~ 305 (523)
T 4b4t_S 303 NSK 305 (523)
T ss_dssp SSS
T ss_pred chh
Confidence 654
No 318
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=89.80 E-value=1.8 Score=47.43 Aligned_cols=142 Identities=15% Similarity=0.094 Sum_probs=67.4
Q ss_pred hhcCCHHHHHHHHHHHHH--h---------CCCCHHHHHHHHHHHHHcCChHHHH----------HHHHHHHhc-----C
Q 003891 144 KLEGDINQGVAYYKKALY--Y---------NWHYADAMYNLGVAYGEMLKFDMAI----------VFYELAFHF-----N 197 (788)
Q Consensus 144 ~~~g~~~~A~~~~~~al~--~---------~p~~~~~~~~la~~~~~~g~~~~A~----------~~~~~al~~-----~ 197 (788)
...+++++|.++-...+. . +.-.+.+|+..+.++...|+..... ..+-.+++. +
T Consensus 147 ~d~k~~~~~~~~~~~~~~~~~l~~~nrrtlD~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~~~rta~lr~D 226 (523)
T 4b4t_S 147 WDSKELEQLVEFNRKVVIPNLLCYYNLRSLNLINAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMKFLKIASLKHD 226 (523)
T ss_dssp --------------------------------------------------------CHHHHHHHHTHHHHHHHHCCSCSS
T ss_pred hccccHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhcccC
Confidence 446788888887765541 1 2223456777777777777665432 122222221 2
Q ss_pred CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 003891 198 PH-CAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNF-------SQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYA 269 (788)
Q Consensus 198 p~-~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~-------~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~ 269 (788)
.. ....++.+-..|...+.+++|.++..++. .|.. ...++.+|.++..+++|.+|.+++..|+...|.+.
T Consensus 227 ~~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~~ 304 (523)
T 4b4t_S 227 NETKAMLINLILRDFLNNGEVDSASDFISKLE--YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHNS 304 (523)
T ss_dssp SCHHHHHHHHHHHHHHHSSCSTTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCSS
T ss_pred cchhHHHHHHHHHHHHccCcHHHHHHHHhcCc--CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcch
Confidence 22 35677888899999999999999999984 4432 34677899999999999999999999999877542
Q ss_pred -------HHHHHHHHHHHHcCCHHH
Q 003891 270 -------EAYNNLGVLYRDAGSISL 287 (788)
Q Consensus 270 -------~~~~~la~~~~~~g~~~e 287 (788)
.++..+..+-.-+|+..+
T Consensus 305 ~a~gfr~~a~K~lI~V~LLlG~iP~ 329 (523)
T 4b4t_S 305 KSLGFLQQSNKLHCCIQLLMGDIPE 329 (523)
T ss_dssp SCSHHHHHHHHHHHHHHHHHTCCCC
T ss_pred hhhhHHHHHHHHHHhHHhhcCCCCC
Confidence 233333334344576543
No 319
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=89.56 E-value=19 Score=42.49 Aligned_cols=251 Identities=11% Similarity=0.060 Sum_probs=142.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCC----HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCC---CcH-HHHHH
Q 003891 61 YYNLGVVYSELMQYDTALGCYEKAALER-PMY----AEAYCNMGVIYKNRGDLESAIACYERCLAVSP---NFE-IAKNN 131 (788)
Q Consensus 61 ~~~lg~~~~~~g~~~~A~~~~~kal~~~-p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p---~~~-~~~~~ 131 (788)
...+|.+ ..|+.++++..+.+.+... ..+ .-+.+.+|.++...+ ++++.++...+.... ... .....
T Consensus 379 ~aSLGlI--h~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~--~~~~~lL~~~L~~~~~~~~~~~~~~ir 454 (963)
T 4ady_A 379 TASLGVI--HKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFG--RDTTDYLKNIIVENSGTSGDEDVDVLL 454 (963)
T ss_dssp HHHHHHH--TSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTT--HHHHHHHHHHHHHHSSCCSCHHHHHHH
T ss_pred HHHhhhh--ccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCc--HHHHHHHHHHHcCccccccccccHHHH
Confidence 3444444 4577778888887766522 222 345666777766665 468888888776543 110 11122
Q ss_pred HHHHHHHhhhhhhhcCCHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 003891 132 MAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYA--DAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGV 209 (788)
Q Consensus 132 la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~--~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 209 (788)
.+ +...+|.++.-.++ +++.+.+...+..+.... .+-+.+|.++...|+-+....++..+.+...+...-...+|.
T Consensus 455 ~g-AaLGLGla~~GS~~-eev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgL 532 (963)
T 4ady_A 455 HG-ASLGIGLAAMGSAN-IEVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGL 532 (963)
T ss_dssp HH-HHHHHHHHSTTCCC-HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHH
T ss_pred HH-HHHHHHHHhcCCCC-HHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHH
Confidence 23 33467766665665 567777777776443211 345677888888888777777777666544333333344455
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCCHH----HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Q 003891 210 IYKDRDNLDKAVECYQMALSIKPNFSQ----SLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSI 285 (788)
Q Consensus 210 ~~~~~g~~~eA~~~~~~al~~~p~~~~----~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~ 285 (788)
.+...|+.+.+....+..... .++. +...+|..|...|+...-...+..+.+-..++..-..-+|......|+.
T Consensus 533 Gll~~g~~e~~~~li~~L~~~--~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~~ 610 (963)
T 4ady_A 533 ALINYGRQELADDLITKMLAS--DESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDY 610 (963)
T ss_dssp HHHTTTCGGGGHHHHHHHHHC--SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSC
T ss_pred HhhhCCChHHHHHHHHHHHhC--CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCCcHHHHHHHHHHHHhhccCCH
Confidence 555678877776666655442 2333 3345677788899965555577776654333333222333334445555
Q ss_pred HHHHHHHHHHHhhCCCChhhHHhHHHHhhhccCCCc
Q 003891 286 SLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHD 321 (788)
Q Consensus 286 ~eA~~~~~~al~l~p~~~~a~~~~lla~~~l~~g~~ 321 (788)
+.+...++...+ ..++.++....+++..+..|..
T Consensus 611 e~v~rlv~~L~~--~~d~~VR~gAalALGli~aGn~ 644 (963)
T 4ady_A 611 TTVPRIVQLLSK--SHNAHVRCGTAFALGIACAGKG 644 (963)
T ss_dssp SSHHHHTTTGGG--CSCHHHHHHHHHHHHHHTSSSC
T ss_pred HHHHHHHHHHHh--cCCHHHHHHHHHHHHHhccCCC
Confidence 444444433332 3457777777777776666554
No 320
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=89.39 E-value=3.8 Score=50.38 Aligned_cols=103 Identities=14% Similarity=-0.019 Sum_probs=75.8
Q ss_pred HHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc-----------------------CCCCHHHHHHHHHHHHHcC
Q 003891 159 ALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHF-----------------------NPHCAEACNNLGVIYKDRD 215 (788)
Q Consensus 159 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-----------------------~p~~~~~~~~la~~~~~~g 215 (788)
.+...+.++...+.+|.++...|++++|..+|+++..- .......|..+..++.+.+
T Consensus 834 l~~~~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~ 913 (1139)
T 4fhn_B 834 LIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEES 913 (1139)
T ss_dssp HHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTS
T ss_pred HhhhccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcC
Confidence 33456677777788999999999999999999876321 1112456677778888889
Q ss_pred CHHHHHHHHHHHHhhCC-CCHH----HHHHHHHHHHHcCCHHHHHHHHHHH
Q 003891 216 NLDKAVECYQMALSIKP-NFSQ----SLNNLGVVYTVQGKMDAAAEMIEKA 261 (788)
Q Consensus 216 ~~~eA~~~~~~al~~~p-~~~~----~~~~la~~~~~~g~~~eA~~~l~ka 261 (788)
.++.+++..+.|++..+ ++.. .|.++-..+...|+|++|...+...
T Consensus 914 ~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~ 964 (1139)
T 4fhn_B 914 AYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVL 964 (1139)
T ss_dssp CCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHH
T ss_pred CHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhC
Confidence 99999999999988754 3322 5667777888889999987777544
No 321
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=89.31 E-value=2.8 Score=45.37 Aligned_cols=98 Identities=9% Similarity=-0.062 Sum_probs=78.4
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCC----HHHHHH
Q 003891 27 LTDLGTSLKLAGNTQDGIQKYYEALKIDP---HYAPAYYNLGVVYSELMQYDTALGCYEKAALER--PMY----AEAYCN 97 (788)
Q Consensus 27 l~~lg~~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~--p~~----~~~~~~ 97 (788)
+..+|..+...|++++|.++|.++..... ...+.+..+..++...+++..+..++.++.... ..+ ......
T Consensus 134 ~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~~ 213 (429)
T 4b4t_R 134 WINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKTY 213 (429)
T ss_dssp CHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHHH
Confidence 56789999999999999999999887643 347788899999999999999999999996542 122 234455
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCCC
Q 003891 98 MGVIYKNRGDLESAIACYERCLAVSPN 124 (788)
Q Consensus 98 la~~~~~~g~~~~A~~~~~~al~~~p~ 124 (788)
.|.++...++|.+|..+|-.++.....
T Consensus 214 ~gl~~l~~r~f~~Aa~~f~e~~~t~~~ 240 (429)
T 4b4t_R 214 YGIHCLAVRNFKEAAKLLVDSLATFTS 240 (429)
T ss_dssp HHHGGGGTSCHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHhChHHHHHHHHHHHhccCCc
Confidence 677888899999999999888765443
No 322
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=82.29 E-value=46 Score=33.82 Aligned_cols=81 Identities=10% Similarity=-0.098 Sum_probs=46.9
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc---CCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 003891 165 HYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDR---DNLDKAVECYQMALSIKPNFSQSLNNL 241 (788)
Q Consensus 165 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~---g~~~eA~~~~~~al~~~p~~~~~~~~l 241 (788)
.+++.+..+|..|.+.+++.+|..+|-.. +.+++..+..+-.-+... |...++ ..+...
T Consensus 132 Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~---~~~s~~~~a~~l~~w~~~~~~~~~~e~---------------dlf~~R 193 (312)
T 2wpv_A 132 GDPYLHNTIGSKLLEGDFVYEAERYFMLG---THDSMIKYVDLLWDWLCQVDDIEDSTV---------------AEFFSR 193 (312)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHTS---CHHHHHHHHHHHHHHHHHTTCCCHHHH---------------HHHHHH
T ss_pred CCHHHHHHHHHHHhhcCCHHHHHHHHHhC---CCccHHHHHHHHHHHHHhcCCCCcchH---------------HHHHHH
Confidence 47888899999999999998888877421 111233333222222222 333332 222222
Q ss_pred H-HHHHHcCCHHHHHHHHHHHHH
Q 003891 242 G-VVYTVQGKMDAAAEMIEKAIA 263 (788)
Q Consensus 242 a-~~~~~~g~~~eA~~~l~kal~ 263 (788)
+ ..|...++...|...++...+
T Consensus 194 aVL~yL~l~n~~~A~~~~~~f~~ 216 (312)
T 2wpv_A 194 LVFNYLFISNISFAHESKDIFLE 216 (312)
T ss_dssp HHHHHHHTTBHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHH
Confidence 2 246678899888888776654
No 323
>1l5w_A Maltodextrin phosphorylase; enzymatic catalysis, substrate complex, trans; HET: GLC PLP; 1.80A {Escherichia coli} SCOP: c.87.1.4 PDB: 1l5v_A* 1l6i_A* 2asv_A* 2av6_A* 2aw3_A* 2azd_A* 1qm5_A* 1e4o_A* 2ecp_A* 1ahp_A*
Probab=77.76 E-value=16 Score=42.15 Aligned_cols=107 Identities=16% Similarity=0.027 Sum_probs=70.0
Q ss_pred CCeEEEecCCC--CcCCHH-HHHHHHHHHh--HcC-----CcEEEEecCCCCCHHHHHHHHHHHHHc--------CCCCC
Q 003891 525 GFITFGSFNNL--AKITPK-VLQVWARILC--AVP-----NSRLVVKCKPFCCDSVRHRFLSTLEQL--------GLESL 586 (788)
Q Consensus 525 ~~~~f~~~~~~--~K~~~~-~~~~~~~il~--~~p-----~~~l~l~~~~~~~~~~~~~l~~~~~~~--------gi~~~ 586 (788)
+.+++|-+-|+ +|...- ++....++++ ..| ..++++.|++.........+.+.+.+. -+. +
T Consensus 525 d~l~~~~vkRl~eYKRq~Lnil~ii~~~~~i~~~~~~~~~p~q~If~GKA~P~y~~aK~iIk~i~~va~~in~Dp~~~-~ 603 (796)
T 1l5w_A 525 QAIFDIQIKRLHEYKRQHLNLLHILALYKEIRENPQADRVPRVFLFGAKAAPGYYLAKNIIFAINKVADVINNDPLVG-D 603 (796)
T ss_dssp TSEEEEEESCCCGGGTHHHHHHHHHHHHHHHHTCTTCCCCCEEEEEECCCCTTCHHHHHHHHHHHHHHHHHHTCTTTG-G
T ss_pred CcceEeeeecchhhcccCEeHHHHHHHHHHHhcCCCCCCCCeEEEEEecCChhHHHHHHHHHHHHHHHHHhccccccC-C
Confidence 45677777777 888776 5555444433 122 377777777654444444554445444 243 6
Q ss_pred --cEEEcCCcCCcHHHHHhcccccEeecCCC--C-CCchhHHHHhhhCCcee
Q 003891 587 --RVDLLPLILLNHDHMQAYSLMDISLDTFP--Y-AGTTTTCESLYMGVPCV 633 (788)
Q Consensus 587 --rv~~~~~~~~~~~~~~~~~~~Dv~Ld~~~--~-~g~~t~~eal~~GvPvv 633 (788)
+|+|++.-. ..--...+..|||+|-|+- + ..||+-+=+|.-|++.|
T Consensus 604 ~lKVvfl~nY~-vslA~~I~~gaDv~l~~S~a~~EAsGTs~MKam~NGaL~i 654 (796)
T 1l5w_A 604 KLKVVFLPDYC-VSAAEKLIPAADISEQISTAGKEASGTGNMKLALNGALTV 654 (796)
T ss_dssp GEEEEECSSCC-HHHHHHHGGGCSEEEECCCTTTCCCCSHHHHHHHTTCEEE
T ss_pred ceEEEEECCCC-HHHHHHHhhhcceeecCCCCCCCCCchHHHHHHHcCCeee
Confidence 899987632 2222235799999999995 7 78999999999998877
No 324
>2c4m_A Glycogen phosphorylase; allosteric control, phosphate dependence, starch degrading, transferase, glycosyltransferase; HET: PLP; 1.9A {Corynebacterium callunae}
Probab=76.76 E-value=17 Score=41.78 Aligned_cols=107 Identities=11% Similarity=-0.013 Sum_probs=71.0
Q ss_pred CCeEEEecCCC--CcCCHH-HHHHHHHHHh--HcC-----CcEEEEecCCCCCHHHHHHHHHHHHHc--------CCCCC
Q 003891 525 GFITFGSFNNL--AKITPK-VLQVWARILC--AVP-----NSRLVVKCKPFCCDSVRHRFLSTLEQL--------GLESL 586 (788)
Q Consensus 525 ~~~~f~~~~~~--~K~~~~-~~~~~~~il~--~~p-----~~~l~l~~~~~~~~~~~~~l~~~~~~~--------gi~~~ 586 (788)
+.+++|-+-|+ +|...- ++....++++ ..| ..++++.|++.........+.+.+... -+. +
T Consensus 515 d~l~~~~vkRlheYKRq~Lnil~ii~~~~~i~~~~~~~~~p~q~If~GKA~P~y~~aK~iIk~i~~va~~in~dp~~~-~ 593 (796)
T 2c4m_A 515 ESIFDVQIKRLHEYKRQLMNALYVLDLYFRIKEDGLTDIPARTVIFGAKAAPGYVRAKAIIKLINSIADLVNNDPEVS-P 593 (796)
T ss_dssp TSEEEEEECCCCGGGTHHHHHHHHHHHHHHHHTSCCCSSCCEEEEEECCCCTTCHHHHHHHHHHHHHHHHHHTCTTTT-T
T ss_pred CCcEEEEeecchhhcccCEeHHHHHHHHHHHhhCCCCCCCCeEEEEEecCCHhHHHHHHHHHHHHHHHHHhccccccC-C
Confidence 45677777777 888776 5666555543 233 377777777654444444454444443 343 7
Q ss_pred --cEEEcCCcCCcHHHHHhcccccEeecCCC--C-CCchhHHHHhhhCCcee
Q 003891 587 --RVDLLPLILLNHDHMQAYSLMDISLDTFP--Y-AGTTTTCESLYMGVPCV 633 (788)
Q Consensus 587 --rv~~~~~~~~~~~~~~~~~~~Dv~Ld~~~--~-~g~~t~~eal~~GvPvv 633 (788)
+|+|++.-. ..--...+..|||++-|+- + ..||+-+=+|.-|++.|
T Consensus 594 ~lKVvFl~nY~-vslA~~I~~gaDv~l~~S~a~~EAsGTs~MKam~NGaL~i 644 (796)
T 2c4m_A 594 LLKVVFVENYN-VSPAEHILPASDVSEQISTAGKEASGTSNMKFMMNGALTL 644 (796)
T ss_dssp TEEEEEETTCC-HHHHHHHGGGCSEEEECCCTTSCSCCHHHHHHHHTTCEEE
T ss_pred ceEEEEECCCC-HHHHHHHhhhcceeecCCCCCCCCCchHHHHHHHcCCeEE
Confidence 899987632 2222236799999999995 7 78999999999998766
No 325
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=73.71 E-value=81 Score=31.97 Aligned_cols=27 Identities=11% Similarity=-0.064 Sum_probs=19.6
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 003891 233 NFSQSLNNLGVVYTVQGKMDAAAEMIE 259 (788)
Q Consensus 233 ~~~~~~~~la~~~~~~g~~~eA~~~l~ 259 (788)
.+++.+..+|..|.+.|++.+|..+|-
T Consensus 132 Gdp~LH~~~a~~~~~e~~~~~A~~H~i 158 (312)
T 2wpv_A 132 GDPYLHNTIGSKLLEGDFVYEAERYFM 158 (312)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 467777777777777777777777664
No 326
>2l2q_A PTS system, cellobiose-specific IIB component (CE; cellobiose-specific phosphotransferase IIB component, struct genomics; NMR {Borrelia burgdorferi}
Probab=70.39 E-value=16 Score=30.71 Aligned_cols=76 Identities=9% Similarity=0.142 Sum_probs=51.2
Q ss_pred cEEEEec-CCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHHHHhcccccEeecCCCCCCchhHHHHhh--hCCce
Q 003891 556 SRLVVKC-KPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPYAGTTTTCESLY--MGVPC 632 (788)
Q Consensus 556 ~~l~l~~-~~~~~~~~~~~l~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~~Dv~Ld~~~~~g~~t~~eal~--~GvPv 632 (788)
.++++++ .|.++.-+..++++.+.+.|++ -.|.-.+. .++-.....+|++|.|.+......-++... .|+||
T Consensus 5 mkIlvvC~~G~~TSll~~kl~~~~~~~gi~-~~i~~~~~----~~~~~~~~~~D~Ii~t~~l~~~~~~~~~~~~~~~~pv 79 (109)
T 2l2q_A 5 MNILLVCGAGMSTSMLVQRIEKYAKSKNIN-ATIEAIAE----TRLSEVVDRFDVVLLAPQSRFNKKRLEEITKPKGIPI 79 (109)
T ss_dssp EEEEEESSSSCSSCHHHHHHHHHHHHHTCS-EEEEEECS----TTHHHHTTTCSEEEECSCCSSHHHHHHHHHHHHTCCE
T ss_pred eEEEEECCChHhHHHHHHHHHHHHHHCCCC-eEEEEecH----HHHHhhcCCCCEEEECCccHHHHHHHHHHhcccCCCE
Confidence 4455554 5555557788999999999997 33544333 233334677999999998876555555543 59999
Q ss_pred eecC
Q 003891 633 VTMA 636 (788)
Q Consensus 633 vt~~ 636 (788)
+...
T Consensus 80 ~~I~ 83 (109)
T 2l2q_A 80 EIIN 83 (109)
T ss_dssp EECC
T ss_pred EEEC
Confidence 8744
No 327
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=66.65 E-value=48 Score=29.14 Aligned_cols=55 Identities=20% Similarity=0.181 Sum_probs=36.3
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 003891 244 VYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKI 298 (788)
Q Consensus 244 ~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l 298 (788)
.+..+|+-++-.+.+...+...+-+++.+..+|.+|.+.|+..+|.+.+.+|.+.
T Consensus 100 ~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~k 154 (172)
T 1wy6_A 100 ILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKK 154 (172)
T ss_dssp HHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 3456666666666666655555556777777777777777777777777776653
No 328
>1e2b_A Enzyme IIB-cellobiose; phosphotransferase system, transferas transport, phosphorylation; NMR {Escherichia coli} SCOP: c.44.2.1 PDB: 1iib_A 1h9c_A* 2wwv_D 2wy2_D
Probab=65.09 E-value=17 Score=30.39 Aligned_cols=74 Identities=11% Similarity=0.100 Sum_probs=47.4
Q ss_pred EEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHHHHhcccccEeecCCCCCCchhHHHHhhhCCceeecC
Q 003891 558 LVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMA 636 (788)
Q Consensus 558 l~l~~~~~~~~~~~~~l~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~~Dv~Ld~~~~~g~~t~~eal~~GvPvvt~~ 636 (788)
|++-|.|..+.-+...+++.++++|++ -.|.-.+... -.++. ..+|++|-+........-++...-.+||.+..
T Consensus 7 ll~Cg~G~sTS~l~~k~~~~~~~~gi~-~~i~a~~~~~-~~~~~---~~~Dvil~~pqv~~~~~~~~~~~~~~~v~vI~ 80 (106)
T 1e2b_A 7 YLFSSAGMSTSLLVSKMRAQAEKYEVP-VIIEAFPETL-AGEKG---QNADVVLLGPQIAYMLPEIQRLLPNKPVEVID 80 (106)
T ss_dssp EEECSSSTTTHHHHHHHHHHHHHSCCS-EEEEEECSSS-TTHHH---HHCSEEEECTTSGGGHHHHHHHSSSSCCCBCC
T ss_pred EEECCCchhHHHHHHHHHHHHHHCCCC-eEEEEecHHH-HHhhc---cCCCEEEEccchhhhHHHHHHHhcCCCceEEC
Confidence 344456777777888999999999998 3444444322 33443 45899998877776666666655444444433
No 329
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=64.02 E-value=76 Score=27.90 Aligned_cols=124 Identities=11% Similarity=-0.076 Sum_probs=60.6
Q ss_pred HHHCCCHHHHHHHHHHHHhhCCCcHHHHHH-----------HHHHHHHhhhhh--hhcCCHHHHHHHHHHHHHhCCCCHH
Q 003891 102 YKNRGDLESAIACYERCLAVSPNFEIAKNN-----------MAIALTDLGTKV--KLEGDINQGVAYYKKALYYNWHYAD 168 (788)
Q Consensus 102 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~-----------la~~l~~lg~~~--~~~g~~~~A~~~~~~al~~~p~~~~ 168 (788)
..-.|..++..+...+.....+.....|.- +...+..+|.++ ..-++...-+.+|-+. +..+ +
T Consensus 17 ~ildG~v~qGveii~k~~~ssni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDis~C~NlKrVi~C~~~~---n~~s-e 92 (172)
T 1wy6_A 17 FLLDGYIDEGVKIVLEITKSSTKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLDKCQNLKSVVECGVIN---NTLN-E 92 (172)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGGGCSCTHHHHHHHHHT---TCCC-H
T ss_pred HHHhhhHHHHHHHHHHHcCCCCccccceeeeecchhhchhHHHHHHHHHhhhcCcHhhhcHHHHHHHHHHh---cchH-H
Confidence 344566666666666666555443322221 122333344332 2345555555555432 1111 1
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 003891 169 AMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALS 229 (788)
Q Consensus 169 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~ 229 (788)
.....-..+..+|+-++-.+.+...+..++-+++.+..+|.+|.+.|+..+|.+.+.+|-+
T Consensus 93 ~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~ 153 (172)
T 1wy6_A 93 HVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACK 153 (172)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence 1111123344556666655565555554555566666666666666666666666666654
No 330
>2f62_A Nucleoside 2-deoxyribosyltransferase; SGPP, structural genomics, PSI, S genomics of pathogenic protozoa consortium; HET: 12M; 1.50A {Trypanosoma brucei} SCOP: c.23.14.1 PDB: 2a0k_A* 2f2t_A* 2f64_A* 2f67_A*
Probab=63.57 E-value=49 Score=29.98 Aligned_cols=78 Identities=14% Similarity=0.138 Sum_probs=46.8
Q ss_pred EEEEecCCCC---C-HHHHHHHHHHHHHcCCCCCcEEEcCCcCC-------cHHHHHhcccccEe---ecCCC--CCCch
Q 003891 557 RLVVKCKPFC---C-DSVRHRFLSTLEQLGLESLRVDLLPLILL-------NHDHMQAYSLMDIS---LDTFP--YAGTT 620 (788)
Q Consensus 557 ~l~l~~~~~~---~-~~~~~~l~~~~~~~gi~~~rv~~~~~~~~-------~~~~~~~~~~~Dv~---Ld~~~--~~g~~ 620 (788)
+.++.|.++- . -...+++.+.+++.|++ +|.|.... .+.-+..+..||++ ||||- ..-.-
T Consensus 11 ~~~y~a~~~F~~~e~~~~~~~l~~~l~~~G~~----v~~P~~~~~~~~~~i~~~d~~~i~~aD~vVA~ldpf~g~~~D~G 86 (161)
T 2f62_A 11 KIYIAGPAVFNPDMGASYYNKVRELLKKENVM----PLIPTDNEATEALDIRQKNIQMIKDCDAVIADLSPFRGHEPDCG 86 (161)
T ss_dssp EEEEESGGGGSTTTTHHHHHHHHHHHHTTTCE----EECTTTTCCSSHHHHHHHHHHHHHHCSEEEEECCCCSSSSCCHH
T ss_pred ceEEEECCCCCHHHHHHHHHHHHHHHHHCCCE----EECCCccCcchHHHHHHHHHHHHHhCCEEEEEecCCCCCCCCCc
Confidence 3455555532 2 34567788888888874 45554211 11225667889988 45542 22233
Q ss_pred hHHH---HhhhCCceeecCCC
Q 003891 621 TTCE---SLYMGVPCVTMAGS 638 (788)
Q Consensus 621 t~~e---al~~GvPvvt~~g~ 638 (788)
|..| |.+.|.|||++..+
T Consensus 87 TafEiGyA~AlgKPVi~l~~d 107 (161)
T 2f62_A 87 TAFEVGCAAALNKMVLTFTSD 107 (161)
T ss_dssp HHHHHHHHHHTTCEEEEECSC
T ss_pred HHHHHHHHHHCCCEEEEEEcC
Confidence 6666 67899999998754
No 331
>3nbm_A PTS system, lactose-specific IIBC components; PTS_IIB_LACTOSE, phosphoenolpyruvate:carbohydrate system, P- phosphorylation; HET: MSE; 1.30A {Streptococcus pneumoniae}
Probab=62.86 E-value=3.5 Score=34.83 Aligned_cols=82 Identities=9% Similarity=0.026 Sum_probs=53.4
Q ss_pred CCcEEEEec-CCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHHHHhcccccEeecCCCCCCchhHHHHhhh--CC
Q 003891 554 PNSRLVVKC-KPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPYAGTTTTCESLYM--GV 630 (788)
Q Consensus 554 p~~~l~l~~-~~~~~~~~~~~l~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~~Dv~Ld~~~~~g~~t~~eal~~--Gv 630 (788)
+..+++|++ .|..+.-+..++++.+++.|++. .+.-.+. .++-......||+|-.+...--..-++...- |+
T Consensus 5 ~~mkIlL~C~aGmSTsllv~km~~~a~~~gi~v-~i~a~~~----~~~~~~~~~~DvvLLgPQV~y~~~~ik~~~~~~~i 79 (108)
T 3nbm_A 5 KELKVLVLCAGSGTSAQLANAINEGANLTEVRV-IANSGAY----GAHYDIMGVYDLIILAPQVRSYYREMKVDAERLGI 79 (108)
T ss_dssp CCEEEEEEESSSSHHHHHHHHHHHHHHHHTCSE-EEEEEET----TSCTTTGGGCSEEEECGGGGGGHHHHHHHHTTTTC
T ss_pred cCceEEEECCCCCCHHHHHHHHHHHHHHCCCce-EEEEcch----HHHHhhccCCCEEEEChHHHHHHHHHHHHhhhcCC
Confidence 344566654 45555567889999999999972 2211222 1233344568999988877766666777654 89
Q ss_pred ceeecCCCcc
Q 003891 631 PCVTMAGSVH 640 (788)
Q Consensus 631 Pvvt~~g~~~ 640 (788)
||++.+...+
T Consensus 80 pV~vI~~~~Y 89 (108)
T 3nbm_A 80 QIVATRGMEY 89 (108)
T ss_dssp EEEECCHHHH
T ss_pred cEEEeCHHHh
Confidence 9998765544
No 332
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=60.61 E-value=1.2e+02 Score=34.34 Aligned_cols=30 Identities=17% Similarity=0.071 Sum_probs=20.8
Q ss_pred HHHHHHHH--HHcCCHHHHHHHHHHHHhhCCCC
Q 003891 272 YNNLGVLY--RDAGSISLAIDAYEQCLKIDPDS 302 (788)
Q Consensus 272 ~~~la~~~--~~~g~~~eA~~~~~~al~l~p~~ 302 (788)
+..+..++ ...|++++|++.+++ +.+-|-+
T Consensus 539 Ll~l~~f~~~~~~g~~~~AL~~i~~-L~llPl~ 570 (661)
T 2qx5_A 539 LLNISSIRELYFNKQWQETLSQMEL-LDLLPFS 570 (661)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHH-TSCSCC-
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHh-CCCCCCC
Confidence 34455554 778999999998888 5566755
No 333
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=59.46 E-value=58 Score=38.90 Aligned_cols=36 Identities=11% Similarity=0.014 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CCCChh
Q 003891 269 AEAYNNLGVLYRDAGSISLAIDAYEQCLKI-DPDSRN 304 (788)
Q Consensus 269 ~~~~~~la~~~~~~g~~~eA~~~~~~al~l-~p~~~~ 304 (788)
...|.....++.+.+-++-+++..+.|++. .++++.
T Consensus 897 ~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~ 933 (950)
T 4gq2_M 897 SCYYLHLSKKLFEESAYIDALEFSLLADASKETDDED 933 (950)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCcc
Confidence 346778888999999999999999999865 445544
No 334
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=56.88 E-value=54 Score=39.21 Aligned_cols=93 Identities=14% Similarity=0.066 Sum_probs=69.4
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---------------------C
Q 003891 30 LGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALE---------------------R 88 (788)
Q Consensus 30 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~---------------------~ 88 (788)
+...+...|.++-| .+.+...|.++..-|.+|.+|...|++++|..+|+++-.- .
T Consensus 816 l~~~L~~~~~~~~a----~eL~~~~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~~~~~~~ll~~~e 891 (950)
T 4gq2_M 816 LVEKLFLFKQYNAC----MQLIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYH 891 (950)
T ss_dssp HHHHHHHTTCHHHH----HHHGGGCCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGGGHHHHHHHHHTT
T ss_pred HHHHHHHhcHHHHH----HHHHhhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcccCcccccchhhhhhccCccc
Confidence 34455666776654 3455677888888899999999999999999999987321 1
Q ss_pred CC--CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC-CCcH
Q 003891 89 PM--YAEAYCNMGVIYKNRGDLESAIACYERCLAVS-PNFE 126 (788)
Q Consensus 89 p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~ 126 (788)
+. ....|.....++...+-++-+++..+.|++.. ++++
T Consensus 892 ~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~ 932 (950)
T 4gq2_M 892 HQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDE 932 (950)
T ss_dssp TCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCH
T ss_pred ccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCc
Confidence 11 12367788889999999999999999999754 3444
No 335
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=55.21 E-value=25 Score=28.28 Aligned_cols=34 Identities=21% Similarity=0.099 Sum_probs=28.0
Q ss_pred hHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 003891 19 AAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALK 52 (788)
Q Consensus 19 a~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~ 52 (788)
...++|..+...+..+...|+|++||++.+++..
T Consensus 10 spLn~AH~~~RrAe~ll~~gkydeAIech~kAa~ 43 (97)
T 2crb_A 10 GPLNLAHQQSRRADRLLAAGKYEEAISCHRKATT 43 (97)
T ss_dssp THHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred chhhhhhHhhhHHHHHHhcCCHHHHHHHHHHHHH
Confidence 4566788888899999999999999988877653
No 336
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=54.32 E-value=20 Score=27.61 Aligned_cols=32 Identities=19% Similarity=0.331 Sum_probs=21.3
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHhCCCCHH
Q 003891 28 TDLGTSLKLAGNTQDGIQKYYEALKIDPHYAP 59 (788)
Q Consensus 28 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~ 59 (788)
..+|..+...|++++|..+|.+|+...|+-..
T Consensus 21 V~~GE~L~~~g~~~~~~~hf~nAl~Vc~qP~~ 52 (73)
T 3ax2_A 21 IQLGEELLAQGDYEKGVDHLTNAIAVCGQPQQ 52 (73)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHcCCHHH
Confidence 45667777777777777777777777665433
No 337
>2pln_A HP1043, response regulator; signaling protein; 1.80A {Helicobacter pylori} PDB: 2hqo_A
Probab=53.78 E-value=1e+02 Score=26.00 Aligned_cols=106 Identities=11% Similarity=0.040 Sum_probs=61.6
Q ss_pred CCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHHHHhc--ccccEeecCCCCCCchhHHHHhhh---
Q 003891 554 PNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAY--SLMDISLDTFPYAGTTTTCESLYM--- 628 (788)
Q Consensus 554 p~~~l~l~~~~~~~~~~~~~l~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~--~~~Dv~Ld~~~~~g~~t~~eal~~--- 628 (788)
++.+++++.. ++..+..+...+...|.. |..... ..+.+..+ ...|+++ .|-..|...++.+..
T Consensus 17 ~~~~ilivdd---~~~~~~~l~~~L~~~g~~---v~~~~~---~~~al~~l~~~~~dlvi--~~~~~g~~~~~~l~~~~~ 85 (137)
T 2pln_A 17 GSMRVLLIEK---NSVLGGEIEKGLNVKGFM---ADVTES---LEDGEYLMDIRNYDLVM--VSDKNALSFVSRIKEKHS 85 (137)
T ss_dssp TCSEEEEECS---CHHHHHHHHHHHHHTTCE---EEEESC---HHHHHHHHHHSCCSEEE--ECSTTHHHHHHHHHHHST
T ss_pred CCCeEEEEeC---CHHHHHHHHHHHHHcCcE---EEEeCC---HHHHHHHHHcCCCCEEE--EcCccHHHHHHHHHhcCC
Confidence 3445666643 346778888888887763 443332 34444433 3478998 555556667776654
Q ss_pred CCceeecCCCccCccchhHHHhhhCCcccccC---CHHHHHHHHHHH
Q 003891 629 GVPCVTMAGSVHAHNVGVSLLTKVGLKHLIAK---NEDEYVQLALQL 672 (788)
Q Consensus 629 GvPvvt~~g~~~~~r~~~~~l~~~gl~~~ia~---~~~~y~~~a~~l 672 (788)
.+|||.+.+..-.. ...-....|..+++.+ +.++..+...++
T Consensus 86 ~~~ii~ls~~~~~~--~~~~~~~~g~~~~l~kP~~~~~~l~~~i~~~ 130 (137)
T 2pln_A 86 SIVVLVSSDNPTSE--EEVHAFEQGADDYIAKPYRSIKALVARIEAR 130 (137)
T ss_dssp TSEEEEEESSCCHH--HHHHHHHTTCSEEEESSCSCHHHHHHHHHHH
T ss_pred CccEEEEeCCCCHH--HHHHHHHcCCceeeeCCCCCHHHHHHHHHHH
Confidence 89999887653222 1122335577777754 455555444443
No 338
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=52.94 E-value=2e+02 Score=29.32 Aligned_cols=82 Identities=12% Similarity=0.060 Sum_probs=47.3
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHH-
Q 003891 164 WHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLG- 242 (788)
Q Consensus 164 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la- 242 (788)
-.+++.+..+|..|.+.+++.+|..+|- + -..+.++.+..+-.-+...+. |.....+...+
T Consensus 133 ~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i--l-g~~~s~~~~a~mL~ew~~~~~---------------~~e~dlfiaRaV 194 (336)
T 3lpz_A 133 AGDPELHHVVGTLYVEEGEFEAAEKHLV--L-GTKESPEVLARMEYEWYKQDE---------------SHTAPLYCARAV 194 (336)
T ss_dssp TCCHHHHHHHHHHHHHTTCHHHHHHHHT--T-SCTTHHHHHHHHHHHHHHTSC---------------GGGHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHH--h-cCCchHHHHHHHHHHHHHhcC---------------CccHHHHHHHHH
Confidence 3578889999999999999999888873 1 111122333333222222222 23333333333
Q ss_pred HHHHHcCCHHHHHHHHHHHHH
Q 003891 243 VVYTVQGKMDAAAEMIEKAIA 263 (788)
Q Consensus 243 ~~~~~~g~~~eA~~~l~kal~ 263 (788)
..|...++...|...++...+
T Consensus 195 L~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 195 LPYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHH
Confidence 346778888888776655543
No 339
>3ksm_A ABC-type sugar transport system, periplasmic COMP; periplasmic component, PSI- 11023L, structural genomics, protein structure initiative; HET: BDR; 1.90A {Hahella chejuensis}
Probab=52.32 E-value=12 Score=36.97 Aligned_cols=38 Identities=8% Similarity=-0.192 Sum_probs=26.9
Q ss_pred eeEeeccCCcccChhHHhhhhhhcccCCCceEEEEEec
Q 003891 355 LVIGYVSPDYFTHSVSYFIEAPLVYHDYQNYKVVVYSA 392 (788)
Q Consensus 355 lriGyvS~df~~H~v~~~~~~~l~~~dr~~fev~~Y~~ 392 (788)
++||++.++..+.-...++.++.......++++..+..
T Consensus 1 ~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~ 38 (276)
T 3ksm_A 1 PKLLLVLKGDSNAYWRQVYLGAQKAADEAGVTLLHRST 38 (276)
T ss_dssp CEEEEECSCSSSTHHHHHHHHHHHHHHHHTCEEEECCC
T ss_pred CeEEEEeCCCCChHHHHHHHHHHHHHHHcCCEEEEECC
Confidence 47999988876655566666666666666788877654
No 340
>1tvm_A PTS system, galactitol-specific IIB component; phosphotransferase system (PTS), P-loop; NMR {Escherichia coli}
Probab=52.19 E-value=25 Score=29.67 Aligned_cols=65 Identities=8% Similarity=0.113 Sum_probs=42.0
Q ss_pred EEEEec-CCCCCHH-HHHHHHHHHHHcCCCCCcEEEcCCcCCcHHHHHhcccccEeecCCCCCCchhHHHHhhh-CCcee
Q 003891 557 RLVVKC-KPFCCDS-VRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPYAGTTTTCESLYM-GVPCV 633 (788)
Q Consensus 557 ~l~l~~-~~~~~~~-~~~~l~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~~Dv~Ld~~~~~g~~t~~eal~~-GvPvv 633 (788)
++++++ .|.++.. +..++++.+.+.|++ -.|.-.+.. +.-.....+|+++.|.+... -. |+||+
T Consensus 23 kIlvvC~sG~gTS~ll~~kl~~~~~~~gi~-~~V~~~~~~----~~~~~~~~~DlIist~~l~~--------~~~~ipvi 89 (113)
T 1tvm_A 23 KIIVACGGAVATSTMAAEEIKELCQSHNIP-VELIQCRVN----EIETYMDGVHLICTTARVDR--------SFGDIPLV 89 (113)
T ss_dssp EEEEESCSCSSHHHHHHHHHHHHHHHTTCC-EEEEEECTT----TTTTSTTSCSEEEESSCCCC--------CSTTCCEE
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHHHcCCe-EEEEEecHH----HHhhccCCCCEEEECCcccc--------ccCCCCEE
Confidence 445554 5555555 589999999999997 334443322 22223456999999998862 12 78988
Q ss_pred e
Q 003891 634 T 634 (788)
Q Consensus 634 t 634 (788)
.
T Consensus 90 ~ 90 (113)
T 1tvm_A 90 H 90 (113)
T ss_dssp C
T ss_pred E
Confidence 5
No 341
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=50.00 E-value=38 Score=27.58 Aligned_cols=43 Identities=16% Similarity=0.222 Sum_probs=27.6
Q ss_pred CCChhhHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 003891 14 PSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPH 56 (788)
Q Consensus 14 P~~~~a~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 56 (788)
|.+.+.....=.--..+|..+...|+++.|+.+|.+|+...|+
T Consensus 10 ~~d~e~~e~~Fl~eV~lGE~L~~~g~~e~av~Hf~nAl~Vc~q 52 (95)
T 1om2_A 10 LKDAEAVQKFFLEEIQLGEELLAQGDYEKGVDHLTNAIAVCGQ 52 (95)
T ss_dssp SSSHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHSC
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHcCC
Confidence 4444444333333456777777888888888877777776654
No 342
>3mm4_A Histidine kinase homolog; receiver domain, CKI1, cytokinin signaling, ROS fold, CHEY-like, transferase; 2.00A {Arabidopsis thaliana} PDB: 3mmn_A
Probab=49.28 E-value=90 Score=29.05 Aligned_cols=110 Identities=12% Similarity=0.210 Sum_probs=63.3
Q ss_pred CcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHHHHhcc---------------cccEe-ecCC-CCC
Q 003891 555 NSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYS---------------LMDIS-LDTF-PYA 617 (788)
Q Consensus 555 ~~~l~l~~~~~~~~~~~~~l~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~---------------~~Dv~-Ld~~-~~~ 617 (788)
+.+++|+.+ ++..+..+...++..|.. +|..... ..+-+..+. ..|++ +|-. |-.
T Consensus 61 ~~~ILiVdD---d~~~~~~l~~~L~~~g~~--~v~~a~~---~~eal~~l~~~~~~~~~~~~~~~~~~dlillD~~lp~~ 132 (206)
T 3mm4_A 61 GKRVLVVDD---NFISRKVATGKLKKMGVS--EVEQCDS---GKEALRLVTEGLTQREEQGSVDKLPFDYIFMDCQMPEM 132 (206)
T ss_dssp TCEEEEECS---CHHHHHHHHHHHHHTTCS--EEEEESS---HHHHHHHHHHHHHHHHHHTCSSCCSCSEEEEESCCSSS
T ss_pred CCEEEEEeC---CHHHHHHHHHHHHHcCCC--eeeeeCC---HHHHHHHHHhhcccccccccccCCCCCEEEEcCCCCCC
Confidence 345666543 346777888888888763 4544433 344444432 35655 5544 555
Q ss_pred CchhHHHHhh-------hCCceeecCCCccCccchhHHHhhhCCcccccCCHHHHHHHHHHHh
Q 003891 618 GTTTTCESLY-------MGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIAKNEDEYVQLALQLA 673 (788)
Q Consensus 618 g~~t~~eal~-------~GvPvvt~~g~~~~~r~~~~~l~~~gl~~~ia~~~~~y~~~a~~l~ 673 (788)
.|..+++.+. ..+|||.+.+...... ...-....|..+++.+..++..+...++.
T Consensus 133 ~G~el~~~lr~~~~~~~~~~piI~ls~~~~~~~-~~~~~~~~Ga~~~l~KP~~~L~~~i~~~l 194 (206)
T 3mm4_A 133 DGYEATREIRKVEKSYGVRTPIIAVSGHDPGSE-EARETIQAGMDAFLDKSLNQLANVIREIE 194 (206)
T ss_dssp CHHHHHHHHHHHHHTTTCCCCEEEEESSCCCHH-HHHHHHHHTCSEEEETTCTTHHHHHHHHC
T ss_pred CHHHHHHHHHhhhhhcCCCCcEEEEECCCCcHH-HHHHHHhCCCCEEEcCcHHHHHHHHHHHH
Confidence 6777777665 4699999887641111 11123456888888876665544444444
No 343
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=48.18 E-value=2.4e+02 Score=28.77 Aligned_cols=83 Identities=12% Similarity=0.098 Sum_probs=41.0
Q ss_pred CHHHHHHHH-HHHHHcCCHHHHHHHHHHHHh----hCC------------------CCHHH-HHHHHHHHHHcCC---HH
Q 003891 200 CAEACNNLG-VIYKDRDNLDKAVECYQMALS----IKP------------------NFSQS-LNNLGVVYTVQGK---MD 252 (788)
Q Consensus 200 ~~~~~~~la-~~~~~~g~~~eA~~~~~~al~----~~p------------------~~~~~-~~~la~~~~~~g~---~~ 252 (788)
....+...+ ..|...++...|...+....+ .+| ..+.. ...+...-.+.+. +.
T Consensus 185 e~dlfiaRaVL~yL~l~n~~~A~~~~~~f~~~l~~~~p~L~~q~~~~~~~~~~~~p~~PLLNFl~lLllt~q~~~~~lF~ 264 (336)
T 3lpz_A 185 TAPLYCARAVLPYLLVANVRAANTAYRIFTSALVEDNKGLTVQNIGSQSAELRIFPSLPLLNFISMLLLSVQKGSPDLFR 264 (336)
T ss_dssp GHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCTTSCCEESCC--CCCEECTTCHHHHHHHHHHHHHHSCCHHHHH
T ss_pred cHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhcCCCccccccccCCcccccCCCCchHHHHHHHHHHHhcCCHHHHH
Confidence 344443333 345677888888776555443 122 22221 1112222233443 33
Q ss_pred HHHHHHHHHHHhCC-CCHHHHHHHHHHHHHc
Q 003891 253 AAAEMIEKAIAANP-TYAEAYNNLGVLYRDA 282 (788)
Q Consensus 253 eA~~~l~kal~~~p-~~~~~~~~la~~~~~~ 282 (788)
.-.+.|+..++.+| .....+..+|..|+..
T Consensus 265 ~L~~~Y~~~l~rd~~~~~~~L~~IG~~YFgi 295 (336)
T 3lpz_A 265 QLKSKYEANLNELNGIWDTALELIAEMYFGI 295 (336)
T ss_dssp HHHHHTHHHHHTTTTTTHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHHHHcCC
Confidence 34455555566666 5566666677666543
No 344
>3uzd_A 14-3-3 protein gamma; structural genomics, SGC, structural genomics consortium, MA alpha, phosphoserine, phosphothreonine; HET: SEP; 1.86A {Homo sapiens} PDB: 4e2e_A 2b05_A* 2c63_A* 2c74_A* 4dnk_A 4gnt_A 2bq0_A 2c23_A 2c1n_A* 2c1j_A* 2btp_A*
Probab=46.45 E-value=2.1e+02 Score=27.70 Aligned_cols=46 Identities=20% Similarity=0.283 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHh-----hCCCCHH---HHHHHHHHHHH-cCCHHHHHHHHHHHHH
Q 003891 218 DKAVECYQMALS-----IKPNFSQ---SLNNLGVVYTV-QGKMDAAAEMIEKAIA 263 (788)
Q Consensus 218 ~eA~~~~~~al~-----~~p~~~~---~~~~la~~~~~-~g~~~eA~~~l~kal~ 263 (788)
+.|...|++|.+ +.|.+|- ...+.+..|+. +++.++|....++++.
T Consensus 148 ~~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyYEIln~~~~Ac~lAk~Afd 202 (248)
T 3uzd_A 148 ESSEKAYSEAHEISKEHMQPTHPIRLGLALNYSVFYYEIQNAPEQACHLAKTAFD 202 (248)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344455555443 3455543 22333444333 6777777776666654
No 345
>3j20_B 30S ribosomal protein S2P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=45.38 E-value=29 Score=32.68 Aligned_cols=88 Identities=16% Similarity=0.217 Sum_probs=53.0
Q ss_pred HHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHHHHhcccccEeecCCCCCCchhHHHHh
Q 003891 547 ARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPYAGTTTTCESL 626 (788)
Q Consensus 547 ~~il~~~p~~~l~l~~~~~~~~~~~~~l~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~~Dv~Ld~~~~~g~~t~~eal 626 (788)
++.+...-...++++|.... ..+-+.+.+++.|-.+--=+|+|..-... .+..+..=|+.+-+-|-.-+....||-
T Consensus 56 ~~~i~~~~~~~ilfV~tk~~---~~~~V~k~A~~~g~~~v~~rw~gG~lTN~-~~~~~~~Pdllvv~Dp~~d~~ai~EA~ 131 (202)
T 3j20_B 56 GKFLAKFEPQSILAVSVRLY---GQKPVKKFGEVTGARAIPGRFLPGTMTNP-AVKNFFEPDVLIVTDPRADHQAMREAV 131 (202)
T ss_dssp HHHHHHSCSSCEEEECCCTT---THHHHHHHHHHHSCCCCCSSCCSSSSSCS-SSSSCCCCSEEEESCTTTSHHHHHHHH
T ss_pred HHHHHhhCCCeEEEEecChH---HHHHHHHHHHHHCCceeCceecCCCcccH-hHHhccCCCeEEEeCCccchHHHHHHH
Confidence 34444444455566664322 23344445555564432234566543222 244566778877777788899999999
Q ss_pred hhCCceeecCCC
Q 003891 627 YMGVPCVTMAGS 638 (788)
Q Consensus 627 ~~GvPvvt~~g~ 638 (788)
.+|+|||++-..
T Consensus 132 ~l~IP~Ial~DT 143 (202)
T 3j20_B 132 EIGIPIVALVDT 143 (202)
T ss_dssp HHTCCEEEEECT
T ss_pred HcCCCEEEEEcC
Confidence 999999987654
No 346
>2br9_A 14-3-3E, 14-3-3 protein epsilon; cell regulator protein, 14-3-3, phosphoserine, structural GE consortium, SGC, ywhae; HET: SEP; 1.75A {Homo sapiens} PDB: 3ual_A* 2o98_A* 3m50_A* 3m51_A* 3axy_C*
Probab=44.22 E-value=2.2e+02 Score=27.31 Aligned_cols=164 Identities=8% Similarity=-0.009 Sum_probs=0.0
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 003891 95 YCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLG 174 (788)
Q Consensus 95 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 174 (788)
+..++.+..+.++|++...+.+++.+.++....--.++-.+-+.-. .|....+...+....+...........--
T Consensus 8 ~v~~AklaeqaeRyddm~~~mk~v~~~~~eLt~EERnLLsvayKnv-----ig~rR~swRiissieqk~~~k~~~~~~~~ 82 (234)
T 2br9_A 8 LVYQAKLAEQAERYDEMVESMKKVAGMDVELTVEERNLLSVAYKNV-----IGARRASWRIISSIEQKEENKGGEDKLKM 82 (234)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHTTCSCCCHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHhCHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHH-----HhhhHHHHHHHHHHHHHhhccCchHHHHH
Q ss_pred HHHHHcCChHHHHHHHHHHHhc-----------CCCCHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHhh---
Q 003891 175 VAYGEMLKFDMAIVFYELAFHF-----------NPHCAEACNNLGVIYKDRDNL----------DKAVECYQMALSI--- 230 (788)
Q Consensus 175 ~~~~~~g~~~~A~~~~~~al~~-----------~p~~~~~~~~la~~~~~~g~~----------~eA~~~~~~al~~--- 230 (788)
.--++..=-++-...+...+.+ .......+-..|..|...-.+ +.|...|++|+++
T Consensus 83 i~~yr~kie~EL~~iC~~il~lld~~Lip~a~~~eskVFy~KmKGDyyRYlaE~~~g~~r~~~~e~a~~aY~~A~~iA~~ 162 (234)
T 2br9_A 83 IREYRQMVETELKLICCDILDVLDKHLIPAANTGESKVFYYKMKGDYHRYLAEFATGNDRKEAAENSLVAYKAASDIAMT 162 (234)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTHHHHCCSHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHhhccCCCchHhHHHHHHHhccHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHc
Q ss_pred --CCCCHH---HHHHHHHHHHH-cCCHHHHHHHHHHHHH
Q 003891 231 --KPNFSQ---SLNNLGVVYTV-QGKMDAAAEMIEKAIA 263 (788)
Q Consensus 231 --~p~~~~---~~~~la~~~~~-~g~~~eA~~~l~kal~ 263 (788)
.|.+|- ...+.+..|+. .++.++|....++++.
T Consensus 163 ~L~pthPirLgLaLN~SVF~yEil~~~~~A~~lAk~afd 201 (234)
T 2br9_A 163 ELPPTHPIRLGLALNFSVFYYEILNSPDRACRLAKAAFD 201 (234)
T ss_dssp HSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred cCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
No 347
>3sho_A Transcriptional regulator, RPIR family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 1.80A {Sphaerobacter thermophilus}
Probab=43.09 E-value=1.1e+02 Score=27.83 Aligned_cols=96 Identities=17% Similarity=0.224 Sum_probs=58.9
Q ss_pred cCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCC-cCCcHHHHHhcccccEeecCCC
Q 003891 537 KITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPL-ILLNHDHMQAYSLMDISLDTFP 615 (788)
Q Consensus 537 K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~~~~l~~~~~~~gi~~~rv~~~~~-~~~~~~~~~~~~~~Dv~Ld~~~ 615 (788)
.++++.++-.++.+.... ++++.|.|. +......+...+...|+. +.+.+. .............-|+++--+.
T Consensus 23 ~l~~~~l~~~~~~i~~a~--~I~i~G~G~-S~~~a~~~~~~l~~~g~~---~~~~~~~~~~~~~~~~~~~~~d~~i~iS~ 96 (187)
T 3sho_A 23 QTQPEAIEAAVEAICRAD--HVIVVGMGF-SAAVAVFLGHGLNSLGIR---TTVLTEGGSTLTITLANLRPTDLMIGVSV 96 (187)
T ss_dssp TCCHHHHHHHHHHHHHCS--EEEEECCGG-GHHHHHHHHHHHHHTTCC---EEEECCCTHHHHHHHHTCCTTEEEEEECC
T ss_pred hCCHHHHHHHHHHHHhCC--EEEEEecCc-hHHHHHHHHHHHHhcCCC---EEEecCCchhHHHHHhcCCCCCEEEEEeC
Confidence 356677777777777654 888888764 345666777888887775 444441 1111223445566677765444
Q ss_pred CCCchhHHHHh----hhCCceeecCCC
Q 003891 616 YAGTTTTCESL----YMGVPCVTMAGS 638 (788)
Q Consensus 616 ~~g~~t~~eal----~~GvPvvt~~g~ 638 (788)
.+....+++++ ..|+|||++.+.
T Consensus 97 sG~t~~~~~~~~~ak~~g~~vi~IT~~ 123 (187)
T 3sho_A 97 WRYLRDTVAALAGAAERGVPTMALTDS 123 (187)
T ss_dssp SSCCHHHHHHHHHHHHTTCCEEEEESC
T ss_pred CCCCHHHHHHHHHHHHCCCCEEEEeCC
Confidence 44444555544 569999987764
No 348
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=41.35 E-value=36 Score=36.70 Aligned_cols=28 Identities=14% Similarity=0.147 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 003891 271 AYNNLGVLYRDAGSISLAIDAYEQCLKI 298 (788)
Q Consensus 271 ~~~~la~~~~~~g~~~eA~~~~~~al~l 298 (788)
.++.+|.++...++|.+|.+.+..|++.
T Consensus 222 Y~YYlGr~~~~~~~y~~A~~~L~~A~~~ 249 (455)
T 3t5v_B 222 YRYLLGRYYLLNSQVHNAFVQFNEAFQS 249 (455)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred eeHHHHHHHHHHccHHHHHHHHHHHHHh
Confidence 4455555555555555555555555555
No 349
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=41.32 E-value=1.5e+02 Score=31.91 Aligned_cols=63 Identities=10% Similarity=0.073 Sum_probs=40.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCC----------CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-CCCc
Q 003891 63 NLGVVYSELMQYDTALGCYEKAALERP----------MYAEAYCNMGVIYKNRGDLESAIACYERCLAV-SPNF 125 (788)
Q Consensus 63 ~lg~~~~~~g~~~~A~~~~~kal~~~p----------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~ 125 (788)
.+-.+|++.++...+...++..-...+ +....++.+|.++...++|.+|.+.+..|++. .|..
T Consensus 181 ~L~kiYFkl~~~~lckni~k~i~~~~~~p~~~~~p~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~lcp~~ 254 (455)
T 3t5v_B 181 KLNNIYFRIESPQLCSNIFKNFQPKSMLAHFNEYQLDQQIEYRYLLGRYYLLNSQVHNAFVQFNEAFQSLLNLP 254 (455)
T ss_dssp HHHHHHHHSSCCTTHHHHHHTHHHHCCCSCGGGSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHcCCHHHHHHHHHHhccCCCCcChhhCCccceEeeeHHHHHHHHHHccHHHHHHHHHHHHHhcCCcc
Confidence 344566777777666666654433221 12346677888888888888888888888877 6543
No 350
>3o1i_D Periplasmic protein TORT; ligand free, two component sensor, periplasmic binding prote signaling protein; HET: PE4; 2.80A {Vibrio parahaemolyticus} PDB: 3o1h_B* 3o1j_C
Probab=41.19 E-value=1e+02 Score=30.33 Aligned_cols=92 Identities=9% Similarity=-0.102 Sum_probs=50.6
Q ss_pred CCCeeEeeccCCcccChhHHhhhhhhcccCCCceEEEEEeccccCChhhHHHHHHHhhhCCeEEEccCCCHHHHHHHHHh
Q 003891 352 ERPLVIGYVSPDYFTHSVSYFIEAPLVYHDYQNYKVVVYSAVVKADAKTIRFREKVMKKGGIWRDIYGIDEKKVAAMVRE 431 (788)
Q Consensus 352 ~~~lriGyvS~df~~H~v~~~~~~~l~~~dr~~fev~~Y~~~~~~D~~t~~~r~~~~~~~~~~~~~~~~~~~~~a~~i~~ 431 (788)
++..+||++.++..+.-...++.++.......++++.++......|...+ .+..+.+.+
T Consensus 3 ~~~~~Igvi~~~~~~~~~~~~~~g~~~~a~~~g~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~ 61 (304)
T 3o1i_D 3 GSDEKICAIYPHLKDSYWLSVNYGMVSEAEKQGVNLRVLEAGGYPNKSRQ---------------------EQQLALCTQ 61 (304)
T ss_dssp --CCEEEEEESCSCSHHHHHHHHHHHHHHHHHTCEEEEEECSSTTCHHHH---------------------HHHHHHHHH
T ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHHHHHcCCeEEEEcCCCCCCHHHH---------------------HHHHHHHHH
Confidence 45678999988875544455556665555556788887765432232211 134445556
Q ss_pred CCCcEEEeCCCCCCCCcccccccCCCCeEEeccc
Q 003891 432 DKIDILVELTGHTANNKLGMMACQPAPVQVTWIG 465 (788)
Q Consensus 432 d~idilvdl~g~t~~~~~~~~a~r~Apvq~~~~g 465 (788)
.++|-+|=...........+-.++ +.|-+..++
T Consensus 62 ~~vdgiii~~~~~~~~~~~~~~~~-~~iPvV~~~ 94 (304)
T 3o1i_D 62 WGANAIILGTVDPHAYEHNLKSWV-GNTPVFATV 94 (304)
T ss_dssp HTCSEEEECCSSTTSSTTTHHHHT-TTSCEEECS
T ss_pred cCCCEEEEeCCChhHHHHHHHHHc-CCCCEEEec
Confidence 688888865443332122233344 555555554
No 351
>3p9z_A Uroporphyrinogen III cosynthase (HEMD); MCSG, PSI2, structural genomics, protein structure initiativ midwest center for structural genomics; HET: MSE; 2.10A {Helicobacter pylori}
Probab=40.88 E-value=15 Score=35.60 Aligned_cols=98 Identities=15% Similarity=0.098 Sum_probs=59.5
Q ss_pred HHHHHHHHHHcCCCCCcEEEcCCcCC--cHHHHHhc--ccccEeecCCCCCCchhHHHHh--hhCCceeecCCCccCccc
Q 003891 571 RHRFLSTLEQLGLESLRVDLLPLILL--NHDHMQAY--SLMDISLDTFPYAGTTTTCESL--YMGVPCVTMAGSVHAHNV 644 (788)
Q Consensus 571 ~~~l~~~~~~~gi~~~rv~~~~~~~~--~~~~~~~~--~~~Dv~Ld~~~~~g~~t~~eal--~~GvPvvt~~g~~~~~r~ 644 (788)
++.|.+.+++.|+..+++..-...+. ..+....+ ...|+++-|+|.+-- ..++.+ ..++++++ .|..
T Consensus 122 ~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~l~~~~~d~v~ftS~s~v~-~~~~~~~~~~~~~~~a------IG~~ 194 (229)
T 3p9z_A 122 VSSLDTILLEHGIDFKQAVVYENKLKHLTLSEQNALKPKEKSILIFTAISHAK-AFLHYFEFLENYTAIS------IGNT 194 (229)
T ss_dssp SSCHHHHHHHTTCEEEEEEEEEEEECCCCHHHHHHHSCCTTCEEEECSHHHHH-HHHHHSCCCTTCEEEE------SSHH
T ss_pred hHHHHHHHHHCCCeEEEEEEEEeeCCCccHHHHHHHhcCCCeEEEEECHHHHH-HHHHHhCcccCCEEEE------ECHH
Confidence 45666778889998776654433321 12233333 457888866653221 123322 23566666 5888
Q ss_pred hhHHHhhhCCccccc--CCHHHHHHHHHHHhcC
Q 003891 645 GVSLLTKVGLKHLIA--KNEDEYVQLALQLASD 675 (788)
Q Consensus 645 ~~~~l~~~gl~~~ia--~~~~~y~~~a~~l~~d 675 (788)
++.-++..|+.-.|+ .+.+..++.+.+|+.+
T Consensus 195 Ta~~l~~~G~~v~va~~~~~e~ll~~l~~l~~~ 227 (229)
T 3p9z_A 195 TALYLQEQGIPSYIAKKPSLEACLELALSLRIK 227 (229)
T ss_dssp HHHHHHHTTCCEEECSSSSHHHHHHHHHHTC--
T ss_pred HHHHHHHcCCCceeCCCCCHHHHHHHHHHHhhh
Confidence 888999999974454 4788888888877643
No 352
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=40.30 E-value=2.4e+02 Score=26.44 Aligned_cols=79 Identities=9% Similarity=0.025 Sum_probs=58.3
Q ss_pred HHHHHHHHh---------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHH
Q 003891 45 QKYYEALKI---------DPHYAPAYYNLGVVYSELMQYDTALGCYEKAALE--RPMYAEAYCNMGVIYKNRGDLESAIA 113 (788)
Q Consensus 45 ~~~~~al~~---------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~--~p~~~~~~~~la~~~~~~g~~~~A~~ 113 (788)
.++++++.. ||.....|...+..+ ..+...++...|.-+... .-..+..|...|..+...|++.+|.+
T Consensus 58 ~lLErc~~~F~~~~rYkND~RYLklWl~Ya~~~-~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~ 136 (202)
T 3esl_A 58 STMERCLIYIQDMETYRNDPRFLKIWIWYINLF-LSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKV 136 (202)
T ss_dssp HHHHHHHHHHTTCGGGTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHhcccccccCCHHHHHHHHHHHHhh-cccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 466776664 223345566665544 234477888888887664 55678899999999999999999999
Q ss_pred HHHHHHhhCCC
Q 003891 114 CYERCLAVSPN 124 (788)
Q Consensus 114 ~~~~al~~~p~ 124 (788)
.|+..++..-.
T Consensus 137 Vy~~GI~~~A~ 147 (202)
T 3esl_A 137 LLELGAENNCR 147 (202)
T ss_dssp HHHHHHHTTCB
T ss_pred HHHHHHHcCCc
Confidence 99999997654
No 353
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0
Probab=40.16 E-value=1.7e+02 Score=24.72 Aligned_cols=77 Identities=13% Similarity=0.153 Sum_probs=47.5
Q ss_pred CcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHHHHhc--ccccEe-ecCC-CCCCchhHHHHhhh--
Q 003891 555 NSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAY--SLMDIS-LDTF-PYAGTTTTCESLYM-- 628 (788)
Q Consensus 555 ~~~l~l~~~~~~~~~~~~~l~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~--~~~Dv~-Ld~~-~~~g~~t~~eal~~-- 628 (788)
..+++++.. ++..+..+...+.+.|.. ..|..... ..+.+..+ ...|++ +|.. |-..|...++.+..
T Consensus 5 ~~~ILivdd---~~~~~~~l~~~L~~~~~~-~~v~~~~~---~~~a~~~l~~~~~dlii~D~~l~~~~g~~~~~~lr~~~ 77 (144)
T 3kht_A 5 SKRVLVVED---NPDDIALIRRVLDRKDIH-CQLEFVDN---GAKALYQVQQAKYDLIILDIGLPIANGFEVMSAVRKPG 77 (144)
T ss_dssp CEEEEEECC---CHHHHHHHHHHHHHTTCC-EEEEEESS---HHHHHHHHTTCCCSEEEECTTCGGGCHHHHHHHHHSSS
T ss_pred CCEEEEEeC---CHHHHHHHHHHHHhcCCC-eeEEEECC---HHHHHHHhhcCCCCEEEEeCCCCCCCHHHHHHHHHhcc
Confidence 345666643 346788899999998876 34544433 34555444 235665 5654 43456677777654
Q ss_pred ---CCceeecCCC
Q 003891 629 ---GVPCVTMAGS 638 (788)
Q Consensus 629 ---GvPvvt~~g~ 638 (788)
++|||.+.+.
T Consensus 78 ~~~~~pii~~s~~ 90 (144)
T 3kht_A 78 ANQHTPIVILTDN 90 (144)
T ss_dssp TTTTCCEEEEETT
T ss_pred cccCCCEEEEeCC
Confidence 7899987654
No 354
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=39.87 E-value=0.00096 Score=71.41 Aligned_cols=60 Identities=13% Similarity=0.103 Sum_probs=38.0
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh
Q 003891 57 YAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAV 121 (788)
Q Consensus 57 ~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 121 (788)
.+..|..+|..+...++..+|++.|-++ +++..+.....+..+.|++++-+.+++-+-+.
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsyIkA-----~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~ 112 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKK 112 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSSCCC-----SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT
T ss_pred CccHHHHHHHHHHccCchHHHHHHHHhC-----CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 4567777777777777777777766544 22333444555555667777777776665544
No 355
>3goe_A DNA repair protein RAD60; SUMO-like domain, sumoylation, SUMO, genome stability, DNA damage, DNA recombination, nucleus; HET: DNA; 0.97A {Schizosaccharomyces pombe} PDB: 3rcz_A*
Probab=39.77 E-value=28 Score=27.13 Aligned_cols=55 Identities=16% Similarity=0.195 Sum_probs=36.2
Q ss_pred CCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCC---cEEEcCCcCCcHHHHHhc-----ccccEeec
Q 003891 554 PNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESL---RVDLLPLILLNHDHMQAY-----SLMDISLD 612 (788)
Q Consensus 554 p~~~l~l~~~~~~~~~~~~~l~~~~~~~gi~~~---rv~~~~~~~~~~~~~~~~-----~~~Dv~Ld 612 (788)
++-++.+.... .+.+-+...+.+.||+++ |+.|-|..-.+...++-| ..+|++||
T Consensus 20 ~dl~f~I~~~t----~v~kLi~ayc~~~~I~~~~~IrllFDGdRLdp~~tp~DlemeD~D~IDvmL~ 82 (82)
T 3goe_A 20 EDLRLSIPVDF----TVKDLIKRYCTEVKISFHERIRLEFEGEWLDPNDQVQSTELEDEDQVSVVLD 82 (82)
T ss_dssp CCEEEEEETTS----BHHHHHHHHHHHHTCCCCTTCEEEETTEECCTTSBGGGSSCCTTCEEEEEC-
T ss_pred CCeEEEecCCC----CHHHHHHHHHHHcCCCcCceEEEEEcCcccCccCChhhhCCcCCceeeeeeC
Confidence 55566665433 677888888899999998 566777655555555555 34555554
No 356
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=38.67 E-value=2.5e+02 Score=26.27 Aligned_cols=49 Identities=10% Similarity=0.049 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 003891 251 MDAAAEMIEKAIAA--NPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKID 299 (788)
Q Consensus 251 ~~eA~~~l~kal~~--~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~ 299 (788)
..++.+.|.-.... ....+..|...|..+...|++++|.+.|+..++..
T Consensus 95 ~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~ 145 (202)
T 3esl_A 95 FHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENN 145 (202)
T ss_dssp HHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred cCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 44555555555443 34445566666666666666666666666666643
No 357
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=37.89 E-value=52 Score=26.03 Aligned_cols=17 Identities=29% Similarity=0.370 Sum_probs=9.2
Q ss_pred HHcCCHHHHHHHHHHHH
Q 003891 246 TVQGKMDAAAEMIEKAI 262 (788)
Q Consensus 246 ~~~g~~~eA~~~l~kal 262 (788)
-..|++++|+.+|.+++
T Consensus 30 D~~g~y~eAl~lY~~ai 46 (83)
T 2w2u_A 30 DKEGNAEEAITNYKKAI 46 (83)
T ss_dssp HHTTCHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHH
Confidence 44555555555555443
No 358
>2npm_A 14-3-3 domain containing protein; cell regulator protein 14-3-3, struc genomics, structural genomics consortium, SGC, protein BIND; HET: SEP; 2.52A {Cryptosporidium parvum}
Probab=37.35 E-value=3e+02 Score=26.84 Aligned_cols=28 Identities=4% Similarity=0.050 Sum_probs=15.3
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhC
Q 003891 95 YCNMGVIYKNRGDLESAIACYERCLAVS 122 (788)
Q Consensus 95 ~~~la~~~~~~g~~~~A~~~~~~al~~~ 122 (788)
+..++.+..+.++|++...+.+++.+.+
T Consensus 31 ~v~~AkLaeqaeRyddmv~~mk~v~~~~ 58 (260)
T 2npm_A 31 NVYMAKLAEQAERYDEMAKYMKDVVEAR 58 (260)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcc
Confidence 3345555555556666555555555544
No 359
>1k68_A Phytochrome response regulator RCPA; phosphorylated aspartate, CHEY homologue, homodimer, (beta/alpha)5, signaling protein; HET: PHD; 1.90A {Tolypothrix SP} SCOP: c.23.1.1
Probab=37.33 E-value=1.8e+02 Score=24.14 Aligned_cols=96 Identities=11% Similarity=0.103 Sum_probs=55.6
Q ss_pred cEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHHHHhcc---------cccEe-ecCC-CCCCchhHHH
Q 003891 556 SRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYS---------LMDIS-LDTF-PYAGTTTTCE 624 (788)
Q Consensus 556 ~~l~l~~~~~~~~~~~~~l~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~---------~~Dv~-Ld~~-~~~g~~t~~e 624 (788)
.+++++.. ++..+..+...+...|.. ..|..... ..+.+..+. ..|++ +|.. |-..|...++
T Consensus 3 ~~ilivdd---~~~~~~~l~~~L~~~~~~-~~v~~~~~---~~~a~~~l~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~ 75 (140)
T 1k68_A 3 KKIFLVED---NKADIRLIQEALANSTVP-HEVVTVRD---GMEAMAYLRQEGEYANASRPDLILLXLNLPKKDGREVLA 75 (140)
T ss_dssp CEEEEECC---CHHHHHHHHHHHHTCSSC-CEEEEECS---HHHHHHHHTTCGGGGSCCCCSEEEECSSCSSSCHHHHHH
T ss_pred CeEEEEeC---CHHHHHHHHHHHHhcCCC-ceEEEECC---HHHHHHHHHcccccccCCCCcEEEEecCCCcccHHHHHH
Confidence 35556543 346788899999988875 34555443 455555443 46776 4544 3345666677
Q ss_pred Hhh-----hCCceeecCCCccCccchhHHHhhhCCcccccC
Q 003891 625 SLY-----MGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIAK 660 (788)
Q Consensus 625 al~-----~GvPvvt~~g~~~~~r~~~~~l~~~gl~~~ia~ 660 (788)
.+. .++|||.+.+..-.... .-....|..+++.+
T Consensus 76 ~l~~~~~~~~~pii~ls~~~~~~~~--~~~~~~g~~~~l~k 114 (140)
T 1k68_A 76 EIKSDPTLKRIPVVVLSTSINEDDI--FHSYDLHVNCYITK 114 (140)
T ss_dssp HHHHSTTGGGSCEEEEESCCCHHHH--HHHHHTTCSEEEEC
T ss_pred HHHcCcccccccEEEEecCCcHHHH--HHHHHhchhheecC
Confidence 665 47899987765322111 11224466666644
No 360
>3heb_A Response regulator receiver domain protein (CHEY); NYSGXRC, PSI-II, respose regulator, structure initiative, structural genomics; 2.40A {Rhodospirillum rubrum} SCOP: c.23.1.0
Probab=37.28 E-value=2e+02 Score=24.62 Aligned_cols=75 Identities=9% Similarity=0.051 Sum_probs=48.0
Q ss_pred EEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHHHHhc-----------ccccEe-ecCC-CCCCchhHH
Q 003891 557 RLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAY-----------SLMDIS-LDTF-PYAGTTTTC 623 (788)
Q Consensus 557 ~l~l~~~~~~~~~~~~~l~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~-----------~~~Dv~-Ld~~-~~~g~~t~~ 623 (788)
+++++.. ++..+..+.+.+.+.|.. .+|..... ..+.+..+ ...|++ +|.. |-..|...+
T Consensus 6 ~ILivdd---d~~~~~~l~~~L~~~g~~-~~v~~~~~---~~~al~~l~~~~~~~~~~~~~~dliilD~~l~~~~g~~~~ 78 (152)
T 3heb_A 6 TIVMIED---DLGHARLIEKNIRRAGVN-NEIIAFTD---GTSALNYLFGDDKSGRVSAGRAQLVLLDLNLPDMTGIDIL 78 (152)
T ss_dssp EEEEECC---CHHHHHHHHHHHHHTTCC-CCEEEESS---HHHHHHHHHCTTSSSGGGTTCBEEEEECSBCSSSBHHHHH
T ss_pred eEEEEeC---CHHHHHHHHHHHHhCCCc-ceEEEeCC---HHHHHHHHhccccccccccCCCCEEEEeCCCCCCcHHHHH
Confidence 5555543 347788899999999886 45655443 34555544 235665 5654 545577777
Q ss_pred HHhhh-----CCceeecCCC
Q 003891 624 ESLYM-----GVPCVTMAGS 638 (788)
Q Consensus 624 eal~~-----GvPvvt~~g~ 638 (788)
+.+.. ++|||.+.+.
T Consensus 79 ~~lr~~~~~~~~pii~~t~~ 98 (152)
T 3heb_A 79 KLVKENPHTRRSPVVILTTT 98 (152)
T ss_dssp HHHHHSTTTTTSCEEEEESC
T ss_pred HHHHhcccccCCCEEEEecC
Confidence 77665 7899987654
No 361
>1ygp_A Yeast glycogen phosphorylase; phosphorylated form, glycosyltransferase; HET: PLP; 2.80A {Saccharomyces cerevisiae} SCOP: c.87.1.4
Probab=37.13 E-value=1.4e+02 Score=34.48 Aligned_cols=97 Identities=10% Similarity=-0.005 Sum_probs=61.7
Q ss_pred CcCCHH----HHHHHHHHHhH-------------cCCcEEEEecCCCCCHHHHHHHHHHHHHcC--------CCCC--cE
Q 003891 536 AKITPK----VLQVWARILCA-------------VPNSRLVVKCKPFCCDSVRHRFLSTLEQLG--------LESL--RV 588 (788)
Q Consensus 536 ~K~~~~----~~~~~~~il~~-------------~p~~~l~l~~~~~~~~~~~~~l~~~~~~~g--------i~~~--rv 588 (788)
+|...- .+..+.+|+.. .....+++.|+..........+.+.+.+.+ +. + +|
T Consensus 612 YKRq~LniL~ii~ry~~Ik~~~~~~~~p~~~~~~~~P~~~IFaGKAaP~y~~aK~iIklI~~va~~iN~Dp~v~-~~LKV 690 (879)
T 1ygp_A 612 YKRQQLNVFGIIYRYLAMKNMLKNGASIEEVARKYPRKVSIFGGKSAPGYYMAKLIIKLINCVADIVNNDESIE-HLLKV 690 (879)
T ss_dssp GGTHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHSCCEEEEEECCCCTTCHHHHHHHHHHHHHHHHHTTCGGGT-TSEEE
T ss_pred hHHHHHHHHHHHHHHHHHHhCccccCCCcccccCCCCeEEEEeccCCCCcHHHHHHHHHHHHHHHHhccChhhC-CceEE
Confidence 666554 44456677766 233556665665434444455555444432 43 5 79
Q ss_pred EEcCCcCCcHHHHHhcccccEeecCC--CC-CCchhHHHHhhhCCceee
Q 003891 589 DLLPLILLNHDHMQAYSLMDISLDTF--PY-AGTTTTCESLYMGVPCVT 634 (788)
Q Consensus 589 ~~~~~~~~~~~~~~~~~~~Dv~Ld~~--~~-~g~~t~~eal~~GvPvvt 634 (788)
+|++--. ..---..+..|||.+.++ |. ..||+-+=++--|++.+.
T Consensus 691 VFlenY~-VslAe~iipaaDvseqistag~EASGTsnMKfalNGaLtlg 738 (879)
T 1ygp_A 691 VFVADYN-VSKAEIIIPASDLSEHISTAGTEASGTSNMKFVMNGGLIIG 738 (879)
T ss_dssp EEETTCC-HHHHHHHGGGCSEEEECCCTTCCSCCHHHHHHHTTTCEEEE
T ss_pred EEeCCCC-HHHHHHhhhhhhhhhhCCCCCccccCchhhHHHHcCCeeee
Confidence 9987632 222223568899998887 56 779999999999999884
No 362
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=37.06 E-value=1.7e+02 Score=26.34 Aligned_cols=68 Identities=16% Similarity=0.068 Sum_probs=48.2
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCc-HHHHHHHHHHH-HHhhhhhhhcCCHHHHHHHHHHHHHh
Q 003891 95 YCNMGVIYKNRGDLESAIACYERCLAVSPNF-EIAKNNMAIAL-TDLGTKVKLEGDINQGVAYYKKALYY 162 (788)
Q Consensus 95 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~l-~~lg~~~~~~g~~~~A~~~~~~al~~ 162 (788)
-+..+..+++.|+|-+|-+.++.+-...+.. .+.....+.+. ...|..+...|+..-|...+.+++..
T Consensus 35 ~~~~~i~lFn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~~ 104 (161)
T 2ijq_A 35 AVVHGVRLYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQY 104 (161)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 3456677788899999999999888776544 12333345555 55666677788888888888888764
No 363
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=36.60 E-value=4.9e+02 Score=29.31 Aligned_cols=31 Identities=13% Similarity=0.108 Sum_probs=21.5
Q ss_pred HHHHHHHHH--HHcCCHHHHHHHHHHHHHhCCCC
Q 003891 237 SLNNLGVVY--TVQGKMDAAAEMIEKAIAANPTY 268 (788)
Q Consensus 237 ~~~~la~~~--~~~g~~~eA~~~l~kal~~~p~~ 268 (788)
.+..+..++ +..|++++|++.+++ +.+-|.+
T Consensus 538 lLl~l~~f~~~~~~g~~~~AL~~i~~-L~llPl~ 570 (661)
T 2qx5_A 538 LLLNISSIRELYFNKQWQETLSQMEL-LDLLPFS 570 (661)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHH-TSCSCC-
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHh-CCCCCCC
Confidence 344455554 789999999999988 4566654
No 364
>1o9d_A 14-3-3-like protein C; protein-binding, fusicoccin, 14-3-3 family, activating drug; HET: TPO; 2.3A {Nicotiana tabacum} SCOP: a.118.7.1 PDB: 1o9c_A* 1o9e_A* 1o9f_A* 3e6y_A*
Probab=36.49 E-value=3.1e+02 Score=26.75 Aligned_cols=46 Identities=20% Similarity=0.320 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHh-----hCCCCHH---HHHHHHHHHHH-cCCHHHHHHHHHHHHH
Q 003891 218 DKAVECYQMALS-----IKPNFSQ---SLNNLGVVYTV-QGKMDAAAEMIEKAIA 263 (788)
Q Consensus 218 ~eA~~~~~~al~-----~~p~~~~---~~~~la~~~~~-~g~~~eA~~~l~kal~ 263 (788)
+.|...|++|.+ +.|.+|- ...+.+..|+. +++.++|+...++++.
T Consensus 152 e~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyYEiln~~~~Ac~lAk~Afd 206 (260)
T 1o9d_A 152 ESTLTAYKAAQDIATTELAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFD 206 (260)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 345555555553 3455553 23344444443 6777777777777764
No 365
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=36.45 E-value=56 Score=25.81 Aligned_cols=16 Identities=31% Similarity=0.443 Sum_probs=8.5
Q ss_pred HHcCCHHHHHHHHHHH
Q 003891 246 TVQGKMDAAAEMIEKA 261 (788)
Q Consensus 246 ~~~g~~~eA~~~l~ka 261 (788)
-+.|+|++|+.+|.++
T Consensus 22 D~~g~y~eAl~lY~~a 37 (83)
T 2v6y_A 22 DKEGKVEDAITYYKKA 37 (83)
T ss_dssp HHTTCHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHH
Confidence 4455555555555544
No 366
>3td3_A Outer membrane protein OMP38; OMPA-like fold, cell-WALL attachment, peptidoglycan-binding, protein,peptide binding protein; 1.59A {Acinetobacter baumannii} PDB: 3td4_A* 3td5_A*
Probab=36.20 E-value=67 Score=27.31 Aligned_cols=53 Identities=13% Similarity=0.103 Sum_probs=37.7
Q ss_pred HHHHHHHHHHhHcCCcEEEEecCCC--CCHHH--------HHHHHHHHHH-cCCCCCcEEEcCC
Q 003891 541 KVLQVWARILCAVPNSRLVVKCKPF--CCDSV--------RHRFLSTLEQ-LGLESLRVDLLPL 593 (788)
Q Consensus 541 ~~~~~~~~il~~~p~~~l~l~~~~~--~~~~~--------~~~l~~~~~~-~gi~~~rv~~~~~ 593 (788)
..++.++.+|+..|+.++.|.|..- ++... ...+.+.+.+ .||+++|+...|.
T Consensus 31 ~~L~~~a~~l~~~~~~~i~I~GhtD~~g~~~~N~~LS~~RA~aV~~~L~~~~Gi~~~ri~~~g~ 94 (123)
T 3td3_A 31 PEIAKVAEKLSEYPNATARIEGHTDNTGPRKLNERLSLARANSVKSALVNEYNVDASRLSTQGF 94 (123)
T ss_dssp HHHHHHHHHHHHSTTCEEEEEECCCSCSCHHHHHHHHHHHHHHHHHHHHHHSCCCGGGEEEEEC
T ss_pred HHHHHHHHHHHhCCCceEEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHhhCCCHHHEEEEEE
Confidence 4677778889999999998887431 22221 2456677776 7999999987765
No 367
>2hqs_H Peptidoglycan-associated lipoprotein; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: d.79.7.1 PDB: 2w8b_C 1oap_A
Probab=34.79 E-value=62 Score=27.38 Aligned_cols=74 Identities=9% Similarity=0.049 Sum_probs=45.9
Q ss_pred HHHHHHHHHHhHcCCcEEEEecCCC--CCHH--------HHHHHHHHHHHcCCCCCcEEEcCCcCCc-------HHHHHh
Q 003891 541 KVLQVWARILCAVPNSRLVVKCKPF--CCDS--------VRHRFLSTLEQLGLESLRVDLLPLILLN-------HDHMQA 603 (788)
Q Consensus 541 ~~~~~~~~il~~~p~~~l~l~~~~~--~~~~--------~~~~l~~~~~~~gi~~~rv~~~~~~~~~-------~~~~~~ 603 (788)
..++.++++|+..|+..+.|.|..- ++.. -...+.+.+.+.||+++||...|.-... ++-...
T Consensus 23 ~~L~~ia~~l~~~p~~~i~I~GhtD~~G~~~~N~~LS~~RA~aV~~~L~~~Gi~~~ri~~~g~G~~~P~~~n~t~~~r~~ 102 (118)
T 2hqs_H 23 QMLDAHANFLRSNPSYKVTVEGHADERGTPEYNISLGERRANAVKMYLQGKGVSADQISIVSYGKEKPAVLGHDEAAYSK 102 (118)
T ss_dssp HHHHHHHHHHHHCTTCCEEEEECCCSSSCHHHHHHHHHHHHHHHHHHHHHTTCCGGGEEEEECTTSSCSSCCSSHHHHHH
T ss_pred HHHHHHHHHHHhCCCcEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCHHHEEEEEecCCCcCCCCcCHHHHHh
Confidence 5677778889999999998887431 2221 1245667777889999999876653211 122333
Q ss_pred cccccEeecCC
Q 003891 604 YSLMDISLDTF 614 (788)
Q Consensus 604 ~~~~Dv~Ld~~ 614 (788)
=+.++|.+-|.
T Consensus 103 NRRVei~i~~~ 113 (118)
T 2hqs_H 103 NRRAVLVYLEH 113 (118)
T ss_dssp HSEEEEECC--
T ss_pred CCcEEEEEecC
Confidence 35566666554
No 368
>3ubw_A 14-3-3E, 14-3-3 protein epsilon; adapter protein, signaling protein, signaling protein-protei complex; HET: SEP; 1.90A {Homo sapiens}
Probab=34.77 E-value=3.3e+02 Score=26.55 Aligned_cols=164 Identities=9% Similarity=0.021 Sum_probs=0.0
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 003891 95 YCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLG 174 (788)
Q Consensus 95 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 174 (788)
+..+|.+..+.++|++..++.+++.+.++....--.++-.+-+.-- .|....+...+....+...........-.
T Consensus 34 lv~~AKLaeqaeRYddMv~~MK~v~~~~~eLt~EERNLLSvAYKNv-----IgarR~swRiissieqkee~~g~~~~~~~ 108 (261)
T 3ubw_A 34 LVYQAKLAEQAERYDEMVESMKKVAGMDVELTVEERNLLSVAYKNV-----IGARRASWRIISSIEQKEENKGGEDKLKM 108 (261)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCCHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHTTTCHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHhc-----cCCchhHHHHHhHHHHhhhccccHHHHHH
Q ss_pred HHHHHcCChHHHHHHHHHHHhc-------CCCCHHH----HHHHHHHHHHcCCH----------HHHHHHHHHHHhh---
Q 003891 175 VAYGEMLKFDMAIVFYELAFHF-------NPHCAEA----CNNLGVIYKDRDNL----------DKAVECYQMALSI--- 230 (788)
Q Consensus 175 ~~~~~~g~~~~A~~~~~~al~~-------~p~~~~~----~~~la~~~~~~g~~----------~eA~~~~~~al~~--- 230 (788)
.--++..=-++-...+...+.+ ...+.+. +-..|..|...-.+ +.|...|++|.++
T Consensus 109 i~~yr~kIe~EL~~iC~dil~lld~~Lip~a~~~EskVFY~KMKGDYyRYlAE~~~g~~rk~~~e~a~~aY~~A~~iA~~ 188 (261)
T 3ubw_A 109 IREYRQMVETELKLICCDILDVLDKHLIPAANTGESKVFYYKMKGDYHRYLAEFATGNDRKEAAENSLVAYKAASDIAMT 188 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTHHHHCCSHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccccCCcHHHHHHHHHhhccHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHh
Q ss_pred --CCCCHH---HHHHHHHHHHH-cCCHHHHHHHHHHHHH
Q 003891 231 --KPNFSQ---SLNNLGVVYTV-QGKMDAAAEMIEKAIA 263 (788)
Q Consensus 231 --~p~~~~---~~~~la~~~~~-~g~~~eA~~~l~kal~ 263 (788)
.|.+|- ...+.+..|+. +++.++|....++++.
T Consensus 189 ~L~pThPirLGLaLNfSVFyYEIln~p~~Ac~LAk~AFd 227 (261)
T 3ubw_A 189 ELPPTHPIRLGLALNFSVFYYEILNSPDRACRLAKAAFD 227 (261)
T ss_dssp HSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred hCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
No 369
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=34.24 E-value=1.7e+02 Score=23.00 Aligned_cols=31 Identities=19% Similarity=0.257 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 003891 22 CLAIVLTDLGTSLKLAGNTQDGIQKYYEALK 52 (788)
Q Consensus 22 ~la~~l~~lg~~~~~~g~~~~A~~~~~~al~ 52 (788)
..|.-+...|...-..|++++|+.+|.++++
T Consensus 17 ~~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie 47 (83)
T 2w2u_A 17 EMARKYAINAVKADKEGNAEEAITNYKKAIE 47 (83)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 3444555666666667777777777766654
No 370
>4erh_A Outer membrane protein A; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; 2.52A {Salmonella enterica subsp}
Probab=33.83 E-value=48 Score=29.38 Aligned_cols=60 Identities=17% Similarity=0.148 Sum_probs=39.7
Q ss_pred CCCcCCHHH---HHHHHHHHhHc--CCcEEEEecCCC--CCH--------HHHHHHHHHHHHcCCCCCcEEEcCC
Q 003891 534 NLAKITPKV---LQVWARILCAV--PNSRLVVKCKPF--CCD--------SVRHRFLSTLEQLGLESLRVDLLPL 593 (788)
Q Consensus 534 ~~~K~~~~~---~~~~~~il~~~--p~~~l~l~~~~~--~~~--------~~~~~l~~~~~~~gi~~~rv~~~~~ 593 (788)
....++++. ++-++.+|+.. |+.++.|.|..- +.. .-...+.+.|.+.||+++||...|.
T Consensus 29 ~s~~l~~~~~~~L~~~a~~l~~~~~~~~~i~I~GhtD~~G~~~~N~~LS~~RA~aV~~~L~~~Gv~~~ri~~~g~ 103 (148)
T 4erh_A 29 NKSTLKPEGQQALDQLYSQLSNLDPKDGSVVVLGFTDRIGSDAYNQGLSEKRAQSVVDYLISKGIPSDKISARGM 103 (148)
T ss_dssp TCCSBCHHHHHHHHHHHHHHTCCCTTTCEEEEEEECCTTCTTCSSSSHHHHHHHHHHHHHHTTTCCGGGEEEEEE
T ss_pred CccccCHHHHHHHHHHHHHHHhcCCCCcEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCHHHEEEEEE
Confidence 335677654 55556667777 788888886321 111 1225677888889999999987664
No 371
>2cwy_A Hypothetical protein TTHA0068; structural genomics, conserved hypothetical protein, NPPSFA; 1.85A {Thermus thermophilus} SCOP: a.246.2.1 PDB: 2cxd_A
Probab=33.69 E-value=1.6e+02 Score=23.69 Aligned_cols=62 Identities=13% Similarity=0.005 Sum_probs=36.8
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHH
Q 003891 97 NMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALY 161 (788)
Q Consensus 97 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~ 161 (788)
..|..++..|+|-+|-+.++..-...+. +......+.+....|..+...|+. |...+.+++.
T Consensus 6 ~~~~~lfn~g~~~eaHEvlE~~W~~~~~-~~~~~~qGLIq~Ava~~h~~~gn~--a~~ll~~a~~ 67 (94)
T 2cwy_A 6 EEVLGLWRAGRYYEVHEVLEPYWLKATG-EERRLLQGVILLAAALHQRRLGRP--GLRNLRKAEA 67 (94)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCH-HHHHHHHHHHHHHHHHHHHHTTCC--CHHHHHHHHH
T ss_pred HHHHHHHhCCChHHHHHHHHHHHhhCCC-chHHHHHHHHHHHHHHHHHHcCcH--HHHHHHHHHH
Confidence 3455666777888887777777766643 323333344444445555556665 6666666654
No 372
>1o9d_A 14-3-3-like protein C; protein-binding, fusicoccin, 14-3-3 family, activating drug; HET: TPO; 2.3A {Nicotiana tabacum} SCOP: a.118.7.1 PDB: 1o9c_A* 1o9e_A* 1o9f_A* 3e6y_A*
Probab=33.19 E-value=3.5e+02 Score=26.38 Aligned_cols=46 Identities=20% Similarity=0.181 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHH-----hCCCCHH---HHHHHHHHHHH-cCCHHHHHHHHHHHHh
Q 003891 252 DAAAEMIEKAIA-----ANPTYAE---AYNNLGVLYRD-AGSISLAIDAYEQCLK 297 (788)
Q Consensus 252 ~eA~~~l~kal~-----~~p~~~~---~~~~la~~~~~-~g~~~eA~~~~~~al~ 297 (788)
+.|...|++|.. +.|.+|. ...+.+..|+. +++.++|....++++.
T Consensus 152 e~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyYEiln~~~~Ac~lAk~Afd 206 (260)
T 1o9d_A 152 ESTLTAYKAAQDIATTELAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFD 206 (260)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 456667777664 4677753 34455555554 7999999888887764
No 373
>4es6_A Uroporphyrinogen-III synthase; heme-biosynthesis, cytoplasmi; 2.22A {Pseudomonas aeruginosa}
Probab=32.75 E-value=51 Score=32.21 Aligned_cols=109 Identities=7% Similarity=0.017 Sum_probs=65.5
Q ss_pred HcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcC---CcHHHHHhc--ccccEeecCCCCCCchhHHHH-
Q 003891 552 AVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLIL---LNHDHMQAY--SLMDISLDTFPYAGTTTTCES- 625 (788)
Q Consensus 552 ~~p~~~l~l~~~~~~~~~~~~~l~~~~~~~gi~~~rv~~~~~~~---~~~~~~~~~--~~~Dv~Ld~~~~~g~~t~~ea- 625 (788)
..++.++++..+. ..++.|.+.+++.|+..+.+..-...+ ...+....+ ...|+++-|+|.+-- ..++.
T Consensus 130 ~~~~~~vL~~rg~----~~r~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~l~~~~~d~v~ftS~s~v~-~~~~~~ 204 (254)
T 4es6_A 130 RVHDPKVLIMRGE----GGREFLAERLRGQGVQVDYLPLYRRRAPDYPAGELLARVRAERLNGLVVSSGQGLQ-NLYQLA 204 (254)
T ss_dssp CSSSCEEEEEECS----SCCCHHHHHHHHTTCEEEEEECEEEECCCCCTTHHHHHHHHTTCCEEECCSHHHHH-HHHHHH
T ss_pred cCCCCEEEEEcCC----ccHHHHHHHHHHCCCEEEEEeEEEeeCCCCCHHHHHHHHHhCCCCEEEEcCHHHHH-HHHHHh
Confidence 4566666655432 234567778888999876665433322 122333333 457899877764321 12222
Q ss_pred -----hhhCCceeecCCCccCccchhHHHhhhCCcccc-c--CCHHHHHHHHHH
Q 003891 626 -----LYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLI-A--KNEDEYVQLALQ 671 (788)
Q Consensus 626 -----l~~GvPvvt~~g~~~~~r~~~~~l~~~gl~~~i-a--~~~~~y~~~a~~ 671 (788)
...++++++ .|..++..++..|+...+ + .+.+.+++...+
T Consensus 205 ~~~~~~l~~~~~~a------IG~~Ta~~l~~~G~~~~~~a~~~~~~~l~~ai~~ 252 (254)
T 4es6_A 205 AADWPEIGRLPLFV------PSPRVAEMARELGAQRVIDCRGASAPALLAALTS 252 (254)
T ss_dssp GGGHHHHTTSCEEE------SSHHHHHHHHHTTCSSEEECSSSSHHHHHHHHHH
T ss_pred hHHHHHHhCCeEEE------ECHHHHHHHHHcCCCceEECCCCCHHHHHHHHHh
Confidence 245788888 688888899999997655 3 466777665543
No 374
>1vi6_A 30S ribosomal protein S2P; structural genomics, ribosome; 1.95A {Archaeoglobus fulgidus} SCOP: c.23.15.1 PDB: 1vi5_A
Probab=32.72 E-value=44 Score=31.59 Aligned_cols=88 Identities=16% Similarity=0.225 Sum_probs=52.7
Q ss_pred HHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHHHHhcccccEeecCCCCCCchhHHHHh
Q 003891 547 ARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPYAGTTTTCESL 626 (788)
Q Consensus 547 ~~il~~~p~~~l~l~~~~~~~~~~~~~l~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~~Dv~Ld~~~~~g~~t~~eal 626 (788)
++.+..+-+..++++|... ....-+.+.+++.|--.-.=+|+|..-.... +..+..=|+.+-+-|-.-+....||-
T Consensus 60 ~~~i~~i~~~~iLfVgTk~---~~~~~V~~~A~~~g~~~v~~rwlgG~LTN~~-~~~f~~PdlliV~Dp~~e~~ai~EA~ 135 (208)
T 1vi6_A 60 AKFLSRYEPSKILLVAARQ---YAHKPVQMFSKVVGSDYIVGRFIPGTLTNPM-LSEYREPEVVFVNDPAIDKQAVSEAT 135 (208)
T ss_dssp HHHHTTSCGGGEEEEECSG---GGHHHHHHHHHHHCCEEEESSCCTTTTTCTT-STTCCCCSEEEESCTTTTHHHHHHHH
T ss_pred HHHHHhcCCCEEEEEeCCH---HHHHHHHHHHHHhCCeeecCEECCCcccChh-hHhhCCCCEEEEECCCcchhHHHHHH
Confidence 4444444455666666431 2333445555555654211235655443322 34456677776666778889999999
Q ss_pred hhCCceeecCCC
Q 003891 627 YMGVPCVTMAGS 638 (788)
Q Consensus 627 ~~GvPvvt~~g~ 638 (788)
..|+|||++-+.
T Consensus 136 ~l~IPvIalvDT 147 (208)
T 1vi6_A 136 AVGIPVVALCDS 147 (208)
T ss_dssp HTTCCEEEEECT
T ss_pred HhCCCEEEEeCC
Confidence 999999987653
No 375
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=32.47 E-value=80 Score=29.72 Aligned_cols=31 Identities=10% Similarity=-0.047 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCCC
Q 003891 94 AYCNMGVIYKNRGDLESAIACYERCLAVSPN 124 (788)
Q Consensus 94 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 124 (788)
..+.+|.++...++|.+|.+.+..|++..|.
T Consensus 16 Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~ 46 (203)
T 3t5x_A 16 YKYYVGRKAMFDSDFKQAEEYLSFAFEHCHR 46 (203)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSCT
T ss_pred HHHHHHHHHHHHhCHHHHHHHHHHHHHHCCH
Confidence 3444555555555555555555555555443
No 376
>3h1g_A Chemotaxis protein CHEY homolog; sulfate-bound CHEY, cytoplasm, flagellar rotatio magnesium, metal-binding, phosphoprotein; 1.70A {Helicobacter pylori} SCOP: c.23.1.1 PDB: 3gwg_A 3h1e_A 3h1f_A
Probab=32.25 E-value=2.1e+02 Score=23.53 Aligned_cols=106 Identities=16% Similarity=0.144 Sum_probs=60.6
Q ss_pred cEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHHHHh---cccccEee-cCC-CCCCchhHHHHhhh--
Q 003891 556 SRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQA---YSLMDISL-DTF-PYAGTTTTCESLYM-- 628 (788)
Q Consensus 556 ~~l~l~~~~~~~~~~~~~l~~~~~~~gi~~~rv~~~~~~~~~~~~~~~---~~~~Dv~L-d~~-~~~g~~t~~eal~~-- 628 (788)
.+++++.. ++..+..+...+++.|.. .+..... ..+-+.. ....|+++ |-. |-..|...++.+..
T Consensus 6 ~~iLivdd---~~~~~~~l~~~L~~~g~~--~v~~~~~---~~~a~~~~~~~~~~dlvi~D~~~p~~~g~~~~~~lr~~~ 77 (129)
T 3h1g_A 6 MKLLVVDD---SSTMRRIIKNTLSRLGYE--DVLEAEH---GVEAWEKLDANADTKVLITDWNMPEMNGLDLVKKVRSDS 77 (129)
T ss_dssp CCEEEECS---CHHHHHHHHHHHHHTTCC--CEEEESS---HHHHHHHHHHCTTCCEEEECSCCSSSCHHHHHHHHHTST
T ss_pred cEEEEEeC---CHHHHHHHHHHHHHcCCc--EEEEeCC---HHHHHHHHHhCCCCCEEEEeCCCCCCCHHHHHHHHHhcC
Confidence 34555543 346788899999998874 3443332 2333332 23467775 655 55567778877753
Q ss_pred ---CCceeecCCCccCccchhHHHhhhCCcccccC--CHHHHHHHHHH
Q 003891 629 ---GVPCVTMAGSVHAHNVGVSLLTKVGLKHLIAK--NEDEYVQLALQ 671 (788)
Q Consensus 629 ---GvPvvt~~g~~~~~r~~~~~l~~~gl~~~ia~--~~~~y~~~a~~ 671 (788)
.+|||.+.+..-.. ...-....|..+++.+ +.++..+...+
T Consensus 78 ~~~~~pii~~s~~~~~~--~~~~~~~~g~~~~l~KP~~~~~L~~~l~~ 123 (129)
T 3h1g_A 78 RFKEIPIIMITAEGGKA--EVITALKAGVNNYIVKPFTPQVLKEKLEV 123 (129)
T ss_dssp TCTTCCEEEEESCCSHH--HHHHHHHHTCCEEEESCCCHHHHHHHHHH
T ss_pred CCCCCeEEEEeCCCChH--HHHHHHHcCccEEEeCCCCHHHHHHHHHH
Confidence 68999877653222 1112334577776654 45555544433
No 377
>3en0_A Cyanophycinase; serine protease, beta peptide specific, hydrolase, protease; 1.50A {Synechocystis SP}
Probab=32.22 E-value=96 Score=31.07 Aligned_cols=81 Identities=9% Similarity=0.003 Sum_probs=48.9
Q ss_pred CCCc-CCHHHHHHHHHHHhHcCCcEEEEecCCCCC-HHHHHHHHHHHHHcCCCCCcEEEcCC----cCCcHHHHHhcccc
Q 003891 534 NLAK-ITPKVLQVWARILCAVPNSRLVVKCKPFCC-DSVRHRFLSTLEQLGLESLRVDLLPL----ILLNHDHMQAYSLM 607 (788)
Q Consensus 534 ~~~K-~~~~~~~~~~~il~~~p~~~l~l~~~~~~~-~~~~~~l~~~~~~~gi~~~rv~~~~~----~~~~~~~~~~~~~~ 607 (788)
...| .++.+++-+.+... -++++++++...... +...+.+++.|+++|+. .|..+.- ..+.++....+..+
T Consensus 35 gedk~~~~~i~~~~v~lag-g~~~~I~~IptAs~~~~~~~~~~~~~f~~lG~~--~v~~L~i~~r~~a~~~~~~~~l~~a 111 (291)
T 3en0_A 35 AEDKVHGREILQTFWSRSG-GNDAIIGIIPSASREPLLIGERYQTIFSDMGVK--ELKVLDIRDRAQGDDSGYRLFVEQC 111 (291)
T ss_dssp SCCSSSCCHHHHHHHHHTT-GGGCEEEEECTTCSSHHHHHHHHHHHHHHHCCS--EEEECCCCSGGGGGCHHHHHHHHHC
T ss_pred CCCccChHHHHHHHHHHcC-CCCCeEEEEeCCCCChHHHHHHHHHHHHHcCCC--eeEEEEecCccccCCHHHHHHHhcC
Confidence 4445 35565555554443 245788887543322 34567888999999984 2333322 12245677788889
Q ss_pred cEeecCCCCCCchh
Q 003891 608 DISLDTFPYAGTTT 621 (788)
Q Consensus 608 Dv~Ld~~~~~g~~t 621 (788)
|++. ++||.|
T Consensus 112 d~I~----v~GGnt 121 (291)
T 3en0_A 112 TGIF----MTGGDQ 121 (291)
T ss_dssp SEEE----ECCSCH
T ss_pred CEEE----ECCCCH
Confidence 9996 567665
No 378
>2aiz_P Outer membrane protein P6; alpha-beta sandwich; HET: UDP AMU DGL 6CL DAL; NMR {Haemophilus influenzae} SCOP: d.79.7.1
Probab=32.12 E-value=64 Score=28.09 Aligned_cols=58 Identities=17% Similarity=0.209 Sum_probs=40.7
Q ss_pred CcCCHH---HHHHHHHHHhHcCCcEEEEecCCC--CCHH--------HHHHHHHHHHHcCCCCCcEEEcCC
Q 003891 536 AKITPK---VLQVWARILCAVPNSRLVVKCKPF--CCDS--------VRHRFLSTLEQLGLESLRVDLLPL 593 (788)
Q Consensus 536 ~K~~~~---~~~~~~~il~~~p~~~l~l~~~~~--~~~~--------~~~~l~~~~~~~gi~~~rv~~~~~ 593 (788)
.+++|+ .++.++++|+..|+.++.|.|..- +... -...+.+.|.+.||+++||...+.
T Consensus 39 a~L~~~~~~~L~~ia~~L~~~p~~~i~I~GhtD~~G~~~~N~~LS~~RA~aV~~~L~~~Gi~~~ri~~~g~ 109 (134)
T 2aiz_P 39 YDITGEYVQILDAHAAYLNATPAAKVLVEGNTDERGTPEYNIALGQRRADAVKGYLAGKGVDAGKLGTVSY 109 (134)
T ss_dssp CCCCHHHHHHHHHHHHHHHHSTTCCEEEEEECCSSSCHHHHHHHHHHHHHHHHHHHHHTTCCGGGEEEEEC
T ss_pred ceeCHHHHHHHHHHHHHHHHCCCceEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHcCCCHHHEEEEEE
Confidence 456654 577778889999999998887431 1221 124566777788999999988765
No 379
>1hym_A CMTI-V, hydrolyzed cucurbita maxima trypsin inhibitor V; hydrolase (serine proteinase); NMR {Cucurbita maxima} SCOP: d.40.1.1
Probab=31.93 E-value=17 Score=25.15 Aligned_cols=27 Identities=11% Similarity=0.400 Sum_probs=23.7
Q ss_pred CeEEEccCCCHHHHHHHHHhCCCcEEE
Q 003891 412 GIWRDIYGIDEKKVAAMVREDKIDILV 438 (788)
Q Consensus 412 ~~~~~~~~~~~~~~a~~i~~d~idilv 438 (788)
..|-++-|.+.+++++.|.+|+.|+-|
T Consensus 8 ~sWPELVG~~~~~A~~~I~~e~P~v~v 34 (45)
T 1hym_A 8 SSWPHLVGVGGSVAKAIIERQNPNVKA 34 (45)
T ss_dssp SBCCCCTTSCHHHHHHHHHHHCTTCEE
T ss_pred CcChhhcCCcHHHHHHHHHHHCCCCeE
Confidence 359999999999999999999888654
No 380
>4had_A Probable oxidoreductase protein; structural genomics, protein structure initiative, nysgrc, PSI-biology; 2.00A {Rhizobium etli}
Probab=31.74 E-value=80 Score=32.37 Aligned_cols=75 Identities=8% Similarity=0.062 Sum_probs=51.9
Q ss_pred HHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHHHHhcccccEeecCCCCCCc-hhHHHH
Q 003891 547 ARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPYAGT-TTTCES 625 (788)
Q Consensus 547 ~~il~~~p~~~l~l~~~~~~~~~~~~~l~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~~Dv~Ld~~~~~g~-~t~~ea 625 (788)
...++..|+..|+-+++. ..++.++..+++|+. ++ | .+.++.++. ..+|+++-+.|-.-| .-+.+|
T Consensus 40 ~~~~~~~~~~~lvav~d~-----~~~~a~~~a~~~g~~--~~-y----~d~~ell~~-~~iDaV~I~tP~~~H~~~~~~a 106 (350)
T 4had_A 40 VPAIQDAENCVVTAIASR-----DLTRAREMADRFSVP--HA-F----GSYEEMLAS-DVIDAVYIPLPTSQHIEWSIKA 106 (350)
T ss_dssp HHHHHHCSSEEEEEEECS-----SHHHHHHHHHHHTCS--EE-E----SSHHHHHHC-SSCSEEEECSCGGGHHHHHHHH
T ss_pred HHHHHhCCCeEEEEEECC-----CHHHHHHHHHHcCCC--ee-e----CCHHHHhcC-CCCCEEEEeCCCchhHHHHHHH
Confidence 566778999999877654 234556667778885 22 2 234565543 457888777766554 478999
Q ss_pred hhhCCceee
Q 003891 626 LYMGVPCVT 634 (788)
Q Consensus 626 l~~GvPvvt 634 (788)
|..|++|++
T Consensus 107 l~aGkhVl~ 115 (350)
T 4had_A 107 ADAGKHVVC 115 (350)
T ss_dssp HHTTCEEEE
T ss_pred HhcCCEEEE
Confidence 999999997
No 381
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=31.68 E-value=2e+02 Score=25.86 Aligned_cols=22 Identities=9% Similarity=-0.094 Sum_probs=13.9
Q ss_pred HHHHHHcCCHHHHHHHHHHHHh
Q 003891 276 GVLYRDAGSISLAIDAYEQCLK 297 (788)
Q Consensus 276 a~~~~~~g~~~eA~~~~~~al~ 297 (788)
|....+.||..-|...+.+++.
T Consensus 82 Al~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 82 AYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHH
Confidence 3344556777777777777665
No 382
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=31.34 E-value=1.1e+02 Score=23.52 Aligned_cols=27 Identities=19% Similarity=0.275 Sum_probs=12.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 003891 207 LGVIYKDRDNLDKAVECYQMALSIKPN 233 (788)
Q Consensus 207 la~~~~~~g~~~eA~~~~~~al~~~p~ 233 (788)
+|..+...|++++|..+|-+|+...|+
T Consensus 23 ~GE~L~~~g~~~~~~~hf~nAl~Vc~q 49 (73)
T 3ax2_A 23 LGEELLAQGDYEKGVDHLTNAIAVCGQ 49 (73)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTCSS
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHcCC
Confidence 344444444444444444444444433
No 383
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=31.22 E-value=0.17 Score=54.41 Aligned_cols=168 Identities=15% Similarity=0.150 Sum_probs=111.5
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHH
Q 003891 30 LGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLE 109 (788)
Q Consensus 30 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g~~~ 109 (788)
.|.-++..|.|+.|.-+|..+ ..|..|+.++..+|+|..|.+..+|| ++..+|-.........+++.
T Consensus 150 VGDrcf~e~lYeAAKilys~i--------sN~akLAstLV~L~~yq~AVdaArKA-----ns~ktWKeV~~ACvd~~Efr 216 (624)
T 3lvg_A 150 VGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVDGKEFR 216 (624)
T ss_dssp HHHHHHHSCCSTTSSTTGGGS--------CCCTTTSSSSSSCSGGGSSTTTTTTC-----CSSCSHHHHTHHHHHSCTTT
T ss_pred HHHHHHHccCHHHHHHHHHhC--------ccHHHHHHHHHHHHHHHHHHHHHHhc-----CChhHHHHHHHHHhCchHHH
Confidence 455566666666665555432 12345666777777777777666554 44566777777777777777
Q ss_pred HHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHH
Q 003891 110 SAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVF 189 (788)
Q Consensus 110 ~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 189 (788)
-|..+--..+-.... +..+-..|...|.+++-+..++.++.+..-.......||.+|.+- +.++-+++
T Consensus 217 LAqicGLniIvhade-----------L~elv~~YE~~G~f~ELIsLlEaglglErAHmGmFTELaILYsKY-~PeKlmEH 284 (624)
T 3lvg_A 217 LAQMCGLHIVVHADE-----------LEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKF-KPQKMREH 284 (624)
T ss_dssp TTTHHHHHHHCCSSC-----------CSGGGSSSSTTCCCTTSTTTHHHHTTSTTCCHHHHHHHHHHHHSS-CTTHHHHH
T ss_pred HHHHhcchhcccHHH-----------HHHHHHHHHhCCCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHhc-CHHHHHHH
Confidence 776665554433222 224556778899999999999999988888888999999887654 56666666
Q ss_pred HHHHHhc--CCC------CHHHHHHHHHHHHHcCCHHHHHH
Q 003891 190 YELAFHF--NPH------CAEACNNLGVIYKDRDNLDKAVE 222 (788)
Q Consensus 190 ~~~al~~--~p~------~~~~~~~la~~~~~~g~~~eA~~ 222 (788)
++..... -|. ....|..+..+|..-.+|+.|..
T Consensus 285 lklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~l 325 (624)
T 3lvg_A 285 LELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 325 (624)
T ss_dssp HTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHH
Confidence 6543221 122 34567778888888888887754
No 384
>3uzd_A 14-3-3 protein gamma; structural genomics, SGC, structural genomics consortium, MA alpha, phosphoserine, phosphothreonine; HET: SEP; 1.86A {Homo sapiens} PDB: 4e2e_A 2b05_A* 2c63_A* 2c74_A* 4dnk_A 4gnt_A 2bq0_A 2c23_A 2c1n_A* 2c1j_A* 2btp_A*
Probab=30.39 E-value=3.8e+02 Score=25.91 Aligned_cols=46 Identities=15% Similarity=0.125 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHH-----hCCCCHH---HHHHHHHHHH-HcCCHHHHHHHHHHHHh
Q 003891 252 DAAAEMIEKAIA-----ANPTYAE---AYNNLGVLYR-DAGSISLAIDAYEQCLK 297 (788)
Q Consensus 252 ~eA~~~l~kal~-----~~p~~~~---~~~~la~~~~-~~g~~~eA~~~~~~al~ 297 (788)
+.|...|++|.. +.|.+|. ...+.+..|+ -+++.++|....++++.
T Consensus 148 ~~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyYEIln~~~~Ac~lAk~Afd 202 (248)
T 3uzd_A 148 ESSEKAYSEAHEISKEHMQPTHPIRLGLALNYSVFYYEIQNAPEQACHLAKTAFD 202 (248)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 556667776654 4677753 3445555554 48999998888777764
No 385
>2iz6_A Molybdenum cofactor carrier protein; metal transport; 1.60A {Chlamydomonas reinhardtii} PDB: 2iz5_A 2iz7_A
Probab=30.37 E-value=62 Score=29.74 Aligned_cols=64 Identities=13% Similarity=0.084 Sum_probs=40.4
Q ss_pred cccEeecCCCCCCch--hHHHHhhhCCceeecCCCccCccchhHHHhhhCCcc-cccCCHHHHHHHHHHHhc
Q 003891 606 LMDISLDTFPYAGTT--TTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKH-LIAKNEDEYVQLALQLAS 674 (788)
Q Consensus 606 ~~Dv~Ld~~~~~g~~--t~~eal~~GvPvvt~~g~~~~~r~~~~~l~~~gl~~-~ia~~~~~y~~~a~~l~~ 674 (788)
.+|.++- .|=+.|| ++.||+-.|.||+.+++. .+...++..-..+. .+++|+++.++...++.+
T Consensus 107 ~sda~Iv-lpGg~GTL~E~~~al~~~kpV~~l~~~----~~~~gfi~~~~~~~i~~~~~~~e~~~~l~~~~~ 173 (176)
T 2iz6_A 107 SSNVLVA-VGMGPGTAAEVALALKAKKPVVLLGTQ----PEAEKFFTSLDAGLVHVAADVAGAIAAVKQLLA 173 (176)
T ss_dssp GCSEEEE-ESCCHHHHHHHHHHHHTTCCEEEESCC----HHHHHHHHHHCTTTEEEESSHHHHHHHHHHHHH
T ss_pred hCCEEEE-ecCCccHHHHHHHHHHhCCcEEEEcCc----ccccccCChhhcCeEEEcCCHHHHHHHHHHHHH
Confidence 3555543 2323344 678899999999999882 25555555533333 357888888877766553
No 386
>2kgw_A Outer membrane protein A; OMPA-L membrane, transmembrane; NMR {Mycobacterium tuberculosis} PDB: 2lca_A 2lbt_A
Probab=30.33 E-value=68 Score=27.56 Aligned_cols=67 Identities=22% Similarity=0.282 Sum_probs=43.8
Q ss_pred CCeEEEecCCCCcCCHH---HHHHHHHHHhHcCCcEEEEecCCC--CCHH--------HHHHHHHHHHHcCCCCCcEEEc
Q 003891 525 GFITFGSFNNLAKITPK---VLQVWARILCAVPNSRLVVKCKPF--CCDS--------VRHRFLSTLEQLGLESLRVDLL 591 (788)
Q Consensus 525 ~~~~f~~~~~~~K~~~~---~~~~~~~il~~~p~~~l~l~~~~~--~~~~--------~~~~l~~~~~~~gi~~~rv~~~ 591 (788)
..|.|.. ...+++++ .++-++.+|+..|+..+.|.|..- +... -...+.+.+.+.||+++||...
T Consensus 24 ~~i~F~~--~s~~l~~~~~~~L~~ia~~l~~~~~~~i~I~GhtD~~G~~~~N~~LS~~RA~aV~~~L~~~Gi~~~ri~~~ 101 (129)
T 2kgw_A 24 GPIAFGN--DGASLIPADYEILNRVADKLKACPDARVTINGYTDNTGSEGINIPLSAQRAKIVADYLVARGVAGDHIATV 101 (129)
T ss_dssp SCBCCCT--TSSCCCHHHHHHHHHHHHHHHTCTTSCEEEEECCCTTSCHHHHHHHHHHHHHHHHHHHHHHTCCGGGEEEE
T ss_pred CceEeCC--CCcccCHHHHHHHHHHHHHHHhCCCceEEEEEEeCCCCChHHHHHHHHHHHHHHHHHHHHcCCCHHHEEEE
Confidence 3444432 33456664 566778889999998998887531 1211 1235667777889999999876
Q ss_pred CC
Q 003891 592 PL 593 (788)
Q Consensus 592 ~~ 593 (788)
|.
T Consensus 102 g~ 103 (129)
T 2kgw_A 102 GL 103 (129)
T ss_dssp EC
T ss_pred EE
Confidence 65
No 387
>3uuw_A Putative oxidoreductase with NAD(P)-binding rossm domain; structural genomics, center for structural genomics of infec diseases, csgid; HET: 1PE PGE; 1.63A {Clostridium difficile}
Probab=29.85 E-value=71 Score=32.14 Aligned_cols=73 Identities=11% Similarity=-0.026 Sum_probs=50.0
Q ss_pred HHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHHHHhcccccEeecCCCCCCch-hHHH
Q 003891 546 WARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPYAGTT-TTCE 624 (788)
Q Consensus 546 ~~~il~~~p~~~l~l~~~~~~~~~~~~~l~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~~Dv~Ld~~~~~g~~-t~~e 624 (788)
+.+.+.+.|+..++-+... ..++.++..++.|+.. ..+.++.+. .+|+++-+.|-.-+. .+.+
T Consensus 22 ~~~~l~~~~~~~l~av~d~-----~~~~~~~~a~~~~~~~--------~~~~~~ll~---~~D~V~i~tp~~~h~~~~~~ 85 (308)
T 3uuw_A 22 YLPILTKSERFEFVGAFTP-----NKVKREKICSDYRIMP--------FDSIESLAK---KCDCIFLHSSTETHYEIIKI 85 (308)
T ss_dssp THHHHTSCSSSEEEEEECS-----CHHHHHHHHHHHTCCB--------CSCHHHHHT---TCSEEEECCCGGGHHHHHHH
T ss_pred HHHHHHhCCCeEEEEEECC-----CHHHHHHHHHHcCCCC--------cCCHHHHHh---cCCEEEEeCCcHhHHHHHHH
Confidence 5667778899998865543 2234445556678751 123456655 789998888776555 5788
Q ss_pred HhhhCCceee
Q 003891 625 SLYMGVPCVT 634 (788)
Q Consensus 625 al~~GvPvvt 634 (788)
|+..|++|++
T Consensus 86 al~~gk~vl~ 95 (308)
T 3uuw_A 86 LLNLGVHVYV 95 (308)
T ss_dssp HHHTTCEEEE
T ss_pred HHHCCCcEEE
Confidence 9999999986
No 388
>1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11
Probab=29.67 E-value=21 Score=35.29 Aligned_cols=29 Identities=24% Similarity=0.288 Sum_probs=23.5
Q ss_pred ccccEeecCCCCCCchhHHHHhhhCCceee
Q 003891 605 SLMDISLDTFPYAGTTTTCESLYMGVPCVT 634 (788)
Q Consensus 605 ~~~Dv~Ld~~~~~g~~t~~eal~~GvPvvt 634 (788)
..-|++|||| .|.|||++.|+.+|.-+|.
T Consensus 211 ~~~~~vlD~f-~GsGtt~~~a~~~gr~~ig 239 (260)
T 1g60_A 211 NPNDLVLDCF-MGSGTTAIVAKKLGRNFIG 239 (260)
T ss_dssp CTTCEEEESS-CTTCHHHHHHHHTTCEEEE
T ss_pred CCCCEEEECC-CCCCHHHHHHHHcCCeEEE
Confidence 4569999995 3668999999999987774
No 389
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=29.09 E-value=1.1e+02 Score=24.78 Aligned_cols=30 Identities=23% Similarity=0.314 Sum_probs=20.6
Q ss_pred HHHhhhhhhhcCCHHHHHHHHHHHHHhCCC
Q 003891 136 LTDLGTKVKLEGDINQGVAYYKKALYYNWH 165 (788)
Q Consensus 136 l~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 165 (788)
-..+|..+...|+++.|+.+|-+|+...|+
T Consensus 23 eV~lGE~L~~~g~~e~av~Hf~nAl~Vc~q 52 (95)
T 1om2_A 23 EIQLGEELLAQGDYEKGVDHLTNAIAVCGQ 52 (95)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHcCC
Confidence 345666666677788888877777766544
No 390
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=28.83 E-value=1.3e+02 Score=28.23 Aligned_cols=33 Identities=6% Similarity=-0.067 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 003891 24 AIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPH 56 (788)
Q Consensus 24 a~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 56 (788)
+...+.+|..+..+++|.+|.+.+.+|+...|.
T Consensus 14 v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~ 46 (203)
T 3t5x_A 14 VTYKYYVGRKAMFDSDFKQAEEYLSFAFEHCHR 46 (203)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCT
T ss_pred HHHHHHHHHHHHHHhCHHHHHHHHHHHHHHCCH
Confidence 334555555555555566665555555555544
No 391
>1s2d_A Purine trans deoxyribosylase; ribosylate intermediate, PTD, ARAA, transferase; HET: AR4 ADE; 2.10A {Lactobacillus helveticus} SCOP: c.23.14.1 PDB: 1s2g_A* 1s2i_A* 1s2l_A 1s3f_A*
Probab=28.61 E-value=73 Score=28.97 Aligned_cols=36 Identities=11% Similarity=-0.012 Sum_probs=22.6
Q ss_pred HHhcccccEee---cCCCCCCch--hHHHHhhhCCceeecC
Q 003891 601 MQAYSLMDISL---DTFPYAGTT--TTCESLYMGVPCVTMA 636 (788)
Q Consensus 601 ~~~~~~~Dv~L---d~~~~~g~~--t~~eal~~GvPvvt~~ 636 (788)
+..+..||+++ |...-.-|| -.-=|.+.|.|||.+.
T Consensus 76 ~~~i~~aD~vVA~ldg~~~D~GTa~EiGyA~algKPVv~l~ 116 (167)
T 1s2d_A 76 LTGISNATCGVFLYDMDQLDDGSAFXIGFMRAMHKPVILVP 116 (167)
T ss_dssp HHHHHHCSEEEEEEESSSCCHHHHHHHHHHHHTTCCEEEEE
T ss_pred HHHHHhCCEEEEECCCCCCCCCceeehhhHhhCCCeEEEEE
Confidence 44567899885 432222222 2445888999999983
No 392
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=28.01 E-value=2.2e+02 Score=22.30 Aligned_cols=30 Identities=23% Similarity=0.326 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 003891 23 LAIVLTDLGTSLKLAGNTQDGIQKYYEALK 52 (788)
Q Consensus 23 la~~l~~lg~~~~~~g~~~~A~~~~~~al~ 52 (788)
.|.-+...|...-..|++++|+.+|.++++
T Consensus 10 ~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie 39 (83)
T 2v6y_A 10 MARKYAILAVKADKEGKVEDAITYYKKAIE 39 (83)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 344455566666667777777777766654
No 393
>3re2_A Predicted protein; menin, multiple endocrine neoplasia 1, tumor suppressor, MIX lineage leukemia, unknown function; 1.95A {Nematostella vectensis}
Probab=27.99 E-value=2.6e+02 Score=28.66 Aligned_cols=93 Identities=18% Similarity=0.100 Sum_probs=51.1
Q ss_pred HHHHHHHHHcC---ChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----CCCCHHHHHHHH
Q 003891 171 YNLGVAYGEML---KFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSI-----KPNFSQSLNNLG 242 (788)
Q Consensus 171 ~~la~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~-----~p~~~~~~~~la 242 (788)
..|-.+++..| +|..|+-.+-..-+..|.. | ...++.+|.+++.. ...+..-|..+|
T Consensus 239 q~LLWLLyD~GhL~rYPmALgnLgDLEe~~pt~--------------g-r~~~l~L~~~AI~sa~~yY~n~HvYPYtylg 303 (472)
T 3re2_A 239 QELLWLLYDMGHIKTYPMAIANLGDLEEISPTP--------------G-RPPAEELFKEAITVAKREYSDHHIYPYTYLG 303 (472)
T ss_dssp HHHHHHHHHTTTTTTCHHHHHHHHHHHHHSCCT--------------T-SCCHHHHHHHHHHHHHHHSTTCCSHHHHHHH
T ss_pred HHHHHHHHhccchhhCchhhcchhhHHhcCCCC--------------C-CCCHHHHHHHHHHHHHHHhccCCccchhhhh
Confidence 44555666655 3555555555555544431 1 11255555555543 234455666677
Q ss_pred HHHHHcCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHH
Q 003891 243 VVYTVQGKMDAAAEMIEKAIAA------NPTYAEAYNNLGVL 278 (788)
Q Consensus 243 ~~~~~~g~~~eA~~~l~kal~~------~p~~~~~~~~la~~ 278 (788)
-.+++.+++.+|+..+-.+-.. ..++.++|..+-.+
T Consensus 304 Gy~yR~~~~reAl~~WA~Aa~Vi~~YNY~reDeEIYKEf~eI 345 (472)
T 3re2_A 304 GYYYRKKKYYEAIASWVDAGYVAGKYNYSKDDEEMYKEFHEI 345 (472)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHTTSCCCGGGHHHHHHHHHH
T ss_pred hhhhhcchHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHH
Confidence 7777788888887777776553 23345555544443
No 394
>1i3c_A Response regulator RCP1; phytochrome, signaling protein; 1.90A {Synechocystis SP} SCOP: c.23.1.1 PDB: 1jlk_A
Probab=27.98 E-value=2.8e+02 Score=23.53 Aligned_cols=96 Identities=11% Similarity=0.111 Sum_probs=54.1
Q ss_pred cEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHHHHhcc---------cccEe-ecCC-CCCCchhHHH
Q 003891 556 SRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYS---------LMDIS-LDTF-PYAGTTTTCE 624 (788)
Q Consensus 556 ~~l~l~~~~~~~~~~~~~l~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~---------~~Dv~-Ld~~-~~~g~~t~~e 624 (788)
.+++++.. ++..+..+...++..|.. ..|..... ..+-+..+. ..|++ +|-. |-..|...++
T Consensus 9 ~~ILivdd---~~~~~~~l~~~L~~~~~~-~~v~~~~~---~~~al~~l~~~~~~~~~~~~dlillD~~lp~~~g~~l~~ 81 (149)
T 1i3c_A 9 KVILLVED---SKADSRLVQEVLKTSTID-HELIILRD---GLAAMAFLQQQGEYENSPRPNLILLDLNLPKKDGREVLA 81 (149)
T ss_dssp EEEEEECC---CHHHHHHHHHHHHSCCSC-EEEEEECS---HHHHHHHHTTCGGGTTCCCCSEEEECSCCSSSCHHHHHH
T ss_pred CeEEEEEC---CHHHHHHHHHHHHhcCCC-ccEEEeCC---HHHHHHHHHhccccccCCCCCEEEEeCCCCCCcHHHHHH
Confidence 45666543 346778888888887764 24443332 345555443 36766 5654 4445667777
Q ss_pred Hhh-----hCCceeecCCCccCccchhHHHhhhCCcccccC
Q 003891 625 SLY-----MGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIAK 660 (788)
Q Consensus 625 al~-----~GvPvvt~~g~~~~~r~~~~~l~~~gl~~~ia~ 660 (788)
.+. .++|||.+.+..-.... .-....|..+++.+
T Consensus 82 ~l~~~~~~~~~piiils~~~~~~~~--~~~~~~ga~~~l~K 120 (149)
T 1i3c_A 82 EIKQNPDLKRIPVVVLTTSHNEDDV--IASYELHVNCYLTK 120 (149)
T ss_dssp HHHHCTTTTTSCEEEEESCCCHHHH--HHHHHTTCSEEEEC
T ss_pred HHHhCcCcCCCeEEEEECCCChHHH--HHHHHcCCcEEEEC
Confidence 775 36899887664322211 11223466666654
No 395
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=27.42 E-value=93 Score=25.01 Aligned_cols=33 Identities=15% Similarity=0.210 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHH
Q 003891 128 AKNNMAIALTDLGTKVKLEGDINQGVAYYKKAL 160 (788)
Q Consensus 128 ~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al 160 (788)
...+.+..+...++.+...|+|++|+++.+++.
T Consensus 10 spLn~AH~~~RrAe~ll~~gkydeAIech~kAa 42 (97)
T 2crb_A 10 GPLNLAHQQSRRADRLLAAGKYEEAISCHRKAT 42 (97)
T ss_dssp THHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred chhhhhhHhhhHHHHHHhcCCHHHHHHHHHHHH
Confidence 344566777777777778888888888777664
No 396
>3l7i_A Teichoic acid biosynthesis protein F; GT-B fold, monotopic membrane protein, structural protein; 2.70A {Staphylococcus epidermidis} PDB: 3l7j_A 3l7k_A* 3l7l_A* 3l7m_A*
Probab=27.23 E-value=3.1e+02 Score=31.24 Aligned_cols=117 Identities=9% Similarity=-0.039 Sum_probs=67.6
Q ss_pred CcEEEcCCcCCcHHHHHhcccccEeecCCCCCCchhHHHHhhhCCceeecCCC--ccCcc-chhHHHhh--hCCcccccC
Q 003891 586 LRVDLLPLILLNHDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGS--VHAHN-VGVSLLTK--VGLKHLIAK 660 (788)
Q Consensus 586 ~rv~~~~~~~~~~~~~~~~~~~Dv~Ld~~~~~g~~t~~eal~~GvPvvt~~g~--~~~~r-~~~~~l~~--~gl~~~ia~ 660 (788)
++++....- .+....+..+|+.+ .--+....|.+.+|.|||...-+ .+... -| +.-. --+|+-++.
T Consensus 598 ~~~~~~~~~---~di~~ll~~aD~lI----TDySSv~fD~~~l~kPiif~~~D~~~Y~~~~rg--~y~d~~~~~pg~~~~ 668 (729)
T 3l7i_A 598 NFAIDVSNY---NDVSELFLISDCLI----TDYSSVMFDYGILKRPQFFFAYDIDKYDKGLRG--FYMNYMEDLPGPIYT 668 (729)
T ss_dssp TTEEECTTC---SCHHHHHHTCSEEE----ESSCTHHHHHGGGCCCEEEECTTTTTTTSSCCS--BSSCTTSSSSSCEES
T ss_pred CcEEeCCCC---cCHHHHHHHhCEEE----eechHHHHhHHhhCCCEEEecCCHHHHhhccCC--cccChhHhCCCCeEC
Confidence 566554432 34555666799998 33345899999999999987432 22221 11 1111 135678899
Q ss_pred CHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHH
Q 003891 661 NEDEYVQLALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRNMW 713 (788)
Q Consensus 661 ~~~~y~~~a~~l~~d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ 713 (788)
|.++.++...............++..+++.. +.-|+..--+-++..+...-
T Consensus 669 ~~~eL~~~i~~~~~~~~~~~~~~~~~~~~~~--~~~dg~as~ri~~~i~~~~~ 719 (729)
T 3l7i_A 669 EPYGLAKELKNLDKVQQQYQEKIDAFYDRFC--SVDNGKASQYIGDLIHKDIK 719 (729)
T ss_dssp SHHHHHHHHTTHHHHHHHTHHHHHHHHHHHS--TTCCSCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHhhhhccchhHHHHHHHHHHHhC--CccCChHHHHHHHHHHhcCc
Confidence 9999988877665444433444455555443 23455554455555554443
No 397
>3db2_A Putative NADPH-dependent oxidoreductase; two domain protein, rossman fold, putative dehydrogenase, ST genomics; 1.70A {Desulfitobacterium hafniense dcb-2}
Probab=27.02 E-value=1.2e+02 Score=31.23 Aligned_cols=76 Identities=9% Similarity=-0.025 Sum_probs=50.0
Q ss_pred HHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHHHHhcccccEeecCCCCCCch-hHH
Q 003891 545 VWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPYAGTT-TTC 623 (788)
Q Consensus 545 ~~~~il~~~p~~~l~l~~~~~~~~~~~~~l~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~~Dv~Ld~~~~~g~~-t~~ 623 (788)
...+.+.+.|+..++-+... ..++.++..++.|+.. ..+.++.+. -..+|+++.+.|-.-+. .+.
T Consensus 19 ~~~~~l~~~~~~~lvav~d~-----~~~~~~~~~~~~g~~~--------~~~~~~~l~-~~~~D~V~i~tp~~~h~~~~~ 84 (354)
T 3db2_A 19 VMADAYTKSEKLKLVTCYSR-----TEDKREKFGKRYNCAG--------DATMEALLA-REDVEMVIITVPNDKHAEVIE 84 (354)
T ss_dssp HHHHHHTTCSSEEEEEEECS-----SHHHHHHHHHHHTCCC--------CSSHHHHHH-CSSCCEEEECSCTTSHHHHHH
T ss_pred HHHHHHHhCCCcEEEEEECC-----CHHHHHHHHHHcCCCC--------cCCHHHHhc-CCCCCEEEEeCChHHHHHHHH
Confidence 45667778899888866543 2234445556668751 122445443 24589988887775554 678
Q ss_pred HHhhhCCceee
Q 003891 624 ESLYMGVPCVT 634 (788)
Q Consensus 624 eal~~GvPvvt 634 (788)
.|+..|.+|++
T Consensus 85 ~al~~gk~vl~ 95 (354)
T 3db2_A 85 QCARSGKHIYV 95 (354)
T ss_dssp HHHHTTCEEEE
T ss_pred HHHHcCCEEEE
Confidence 99999999997
No 398
>3kuu_A Phosphoribosylaminoimidazole carboxylase catalyti PURE; 3-layer (ABA) sandwich, rossmann fold, csgid, lyase, structu genomics; 1.41A {Yersinia pestis} SCOP: c.23.8.1 PDB: 1d7a_A* 1qcz_A 2ate_A* 2nsl_A* 2nsh_A* 2nsj_A*
Probab=26.91 E-value=3.6e+02 Score=24.48 Aligned_cols=98 Identities=11% Similarity=-0.057 Sum_probs=56.0
Q ss_pred EEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHHHHhc-----ccccEeecCCCCCCchhHHHHhhhCCc
Q 003891 557 RLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAY-----SLMDISLDTFPYAGTTTTCESLYMGVP 631 (788)
Q Consensus 557 ~l~l~~~~~~~~~~~~~l~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~-----~~~Dv~Ld~~~~~g~~t~~eal~~GvP 631 (788)
+.++.| +..+-+.-+.....++++|+.. .+...+--...++...+. +.++|++-----.++...+=|-..-+|
T Consensus 15 V~IimG-S~SD~~v~~~a~~~L~~~Gi~~-ev~V~SaHR~p~~~~~~~~~a~~~g~~ViIa~AG~aa~LpgvvA~~t~~P 92 (174)
T 3kuu_A 15 IAIVMG-SKSDWATMQFAADVLTTLNVPF-HVEVVSAHRTPDRLFSFAEQAEANGLHVIIAGNGGAAHLPGMLAAKTLVP 92 (174)
T ss_dssp EEEEES-SGGGHHHHHHHHHHHHHTTCCE-EEEECCTTTCHHHHHHHHHHTTTTTCSEEEEEEESSCCHHHHHHHTCSSC
T ss_pred EEEEEC-cHHHHHHHHHHHHHHHHcCCCE-EEEEEcccCCHHHHHHHHHHHHhCCCcEEEEECChhhhhHHHHHhccCCC
Confidence 334444 3345567778888899999984 455555433333333332 457888754444556655556666789
Q ss_pred eeecCCCccCccchhHHHhhhCCcc
Q 003891 632 CVTMAGSVHAHNVGVSLLTKVGLKH 656 (788)
Q Consensus 632 vvt~~g~~~~~r~~~~~l~~~gl~~ 656 (788)
||-.+-..-.-.--.++|..+.+|.
T Consensus 93 VIgVP~~~~~l~G~dsLlS~vqmP~ 117 (174)
T 3kuu_A 93 VLGVPVQSAALSGVDSLYSIVQMPR 117 (174)
T ss_dssp EEEEEECCTTTTTHHHHHHHHTCCT
T ss_pred EEEeeCCCCCCCCHHHHHHhhhCCC
Confidence 9876532111111246777766654
No 399
>3oon_A Outer membrane protein (TPN50); protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG; 1.79A {Borrelia burgdorferi}
Probab=26.81 E-value=97 Score=26.23 Aligned_cols=54 Identities=7% Similarity=0.056 Sum_probs=39.1
Q ss_pred HHHHHHHHHHhHcCCcEEEEecCCC--CCHHH--------HHHHHHHHHHcCCC-CCcEEEcCCc
Q 003891 541 KVLQVWARILCAVPNSRLVVKCKPF--CCDSV--------RHRFLSTLEQLGLE-SLRVDLLPLI 594 (788)
Q Consensus 541 ~~~~~~~~il~~~p~~~l~l~~~~~--~~~~~--------~~~l~~~~~~~gi~-~~rv~~~~~~ 594 (788)
..++.++.+|+..|+.++.|.|..- +.... ...+.+.+.+.|++ ++|+...|.-
T Consensus 34 ~~L~~~a~~l~~~~~~~i~I~GhtD~~g~~~~N~~LS~~RA~aV~~~L~~~Gv~~~~ri~~~g~G 98 (123)
T 3oon_A 34 KKIDLIAKLLEKFKKNNILIEGHTEQFGLEEEMHELSEKRARAIGNYLIKMKVKDKDQILFKGWG 98 (123)
T ss_dssp HHHHHHHHHHHHSCSCCEEEEECCCSCCCHHHHHHHHHHHHHHHHHHHHHTTSSCGGGEEEEECT
T ss_pred HHHHHHHHHHHHCCCceEEEEEEeCCCCChHHHHHHHHHHHHHHHHHHHHcCCCchHeEEEEEEc
Confidence 5677788889999999999887432 22221 24567778889999 9999887653
No 400
>1e5p_A Aphrodisin; lipocalin, pheromone, hamster,; HET: MSE; 1.63A {Mesocricetus auratus} SCOP: b.60.1.1
Probab=26.74 E-value=66 Score=28.31 Aligned_cols=38 Identities=8% Similarity=-0.050 Sum_probs=30.7
Q ss_pred cEEEEecC-CCCCHHHHHHHHHHHHHcCCCCCcEEEcCC
Q 003891 556 SRLVVKCK-PFCCDSVRHRFLSTLEQLGLESLRVDLLPL 593 (788)
Q Consensus 556 ~~l~l~~~-~~~~~~~~~~l~~~~~~~gi~~~rv~~~~~ 593 (788)
-.+||.+. +..++...+++.+.+++.|++.++|++++.
T Consensus 107 ~~~~llsR~~~l~~e~~~~f~~~~~~~G~~~~~ii~~~~ 145 (151)
T 1e5p_A 107 NMIVVAGKGNALTPEENEILVQFAHEKKIPVENILNILA 145 (151)
T ss_dssp EEEEEEESSSCCCHHHHHHHHHHHHHTTCCGGGEEECGG
T ss_pred EEEEEEecCCCCCHHHHHHHHHHHHHcCCCHHHEEECCc
Confidence 45677764 345678899999999999999999998765
No 401
>3v5n_A Oxidoreductase; structural genomics, PSI-biology, protein structure initiati nysgrc, NEW YORK structural genomics research consortium; 2.80A {Sinorhizobium meliloti}
Probab=26.51 E-value=93 Score=32.97 Aligned_cols=78 Identities=14% Similarity=0.021 Sum_probs=50.2
Q ss_pred HHHHhHcCCcEEEE-ecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHHHHhc----ccccEeecCCCCCCch-
Q 003891 547 ARILCAVPNSRLVV-KCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAY----SLMDISLDTFPYAGTT- 620 (788)
Q Consensus 547 ~~il~~~p~~~l~l-~~~~~~~~~~~~~l~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~----~~~Dv~Ld~~~~~g~~- 620 (788)
...+...|+..|+- +... ..++.++..+++|+...++ ..+.++.+..- ..+|+++-+.|..-+.
T Consensus 56 ~~~~~~~~~~~lva~v~d~-----~~~~a~~~a~~~g~~~~~~-----~~~~~~ll~~~~~~~~~vD~V~I~tp~~~H~~ 125 (417)
T 3v5n_A 56 RIAARLDDHYELVAGALSS-----TPEKAEASGRELGLDPSRV-----YSDFKEMAIREAKLKNGIEAVAIVTPNHVHYA 125 (417)
T ss_dssp HHHHHHTSCEEEEEEECCS-----SHHHHHHHHHHHTCCGGGB-----CSCHHHHHHHHHHCTTCCSEEEECSCTTSHHH
T ss_pred HHHHhhCCCcEEEEEEeCC-----CHHHHHHHHHHcCCCcccc-----cCCHHHHHhcccccCCCCcEEEECCCcHHHHH
Confidence 44456678878763 4433 2344556667789864333 23355666542 3489888777775554
Q ss_pred hHHHHhhhCCceee
Q 003891 621 TTCESLYMGVPCVT 634 (788)
Q Consensus 621 t~~eal~~GvPvvt 634 (788)
.+..||..|++|++
T Consensus 126 ~~~~al~aGkhVl~ 139 (417)
T 3v5n_A 126 AAKEFLKRGIHVIC 139 (417)
T ss_dssp HHHHHHTTTCEEEE
T ss_pred HHHHHHhCCCeEEE
Confidence 67899999999997
No 402
>2k1s_A Inner membrane lipoprotein YIAD; abbababab, OMPA, alpha beta, ME palmitate, transmembrane, structural genomics, PSI-2; NMR {Escherichia coli}
Probab=26.40 E-value=1e+02 Score=27.31 Aligned_cols=58 Identities=21% Similarity=0.177 Sum_probs=39.4
Q ss_pred CcCCH---HHHHHHHHHHhHcCCcEEEEecCCC--CCHH--------HHHHHHHHHHHcCCCCCcEEEcCC
Q 003891 536 AKITP---KVLQVWARILCAVPNSRLVVKCKPF--CCDS--------VRHRFLSTLEQLGLESLRVDLLPL 593 (788)
Q Consensus 536 ~K~~~---~~~~~~~~il~~~p~~~l~l~~~~~--~~~~--------~~~~l~~~~~~~gi~~~rv~~~~~ 593 (788)
..++| ..++.++++|+..|+..+.|.|..- ++.. -...+.+.+.+.||+++||...|.
T Consensus 43 ~~L~~~~~~~L~~ia~~L~~~~~~~i~I~GhtD~~G~~~~N~~LS~~RA~aV~~~L~~~Gv~~~ri~~~g~ 113 (149)
T 2k1s_A 43 ATLKPAGANTLTGVAMVLKEYPKTAVNVIGYTDSTGGHDLNMRLSQQRADSVASALITQGVDASRIRTQGL 113 (149)
T ss_dssp SCBCHHHHHHHHHHHHHHHHCTTEEEEEEEECCCTTCHHHHHHHHHHHHHHHHHHHHHHTCCGGGEEEEEC
T ss_pred ccCCHHHHHHHHHHHHHHHhCCCceEEEEEEcCCCCChHHHHHHHHHHHHHHHHHHHHcCCCHHHEEEEEE
Confidence 44555 4566778889999998888887431 2221 113466677778999999988765
No 403
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}
Probab=26.37 E-value=2.4e+02 Score=22.24 Aligned_cols=99 Identities=12% Similarity=0.057 Sum_probs=57.3
Q ss_pred EEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHHHHhc--ccccEe-ecCC-CCCCchhHHHHhh-----
Q 003891 557 RLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAY--SLMDIS-LDTF-PYAGTTTTCESLY----- 627 (788)
Q Consensus 557 ~l~l~~~~~~~~~~~~~l~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~--~~~Dv~-Ld~~-~~~g~~t~~eal~----- 627 (788)
+++++.. ++..+..+...+...|.. |..... ..+.+..+ ...|++ +|.. |-..|...++.+.
T Consensus 3 ~iliv~~---~~~~~~~l~~~l~~~g~~---v~~~~~---~~~~~~~l~~~~~dlii~d~~~~~~~~~~~~~~l~~~~~~ 73 (119)
T 2j48_A 3 HILLLEE---EDEAATVVCEMLTAAGFK---VIWLVD---GSTALDQLDLLQPIVILMAWPPPDQSCLLLLQHLREHQAD 73 (119)
T ss_dssp EEEEECC---CHHHHHHHHHHHHHTTCE---EEEESC---HHHHHHHHHHHCCSEEEEECSTTCCTHHHHHHHHHHTCCC
T ss_pred EEEEEeC---CHHHHHHHHHHHHhCCcE---EEEecC---HHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHhcccc
Confidence 4555543 346788888889888873 444332 34444332 234654 5644 3345667777775
Q ss_pred hCCceeecCCCccCccchhHHHhhhCCcccccC--CHHHHHHHH
Q 003891 628 MGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIAK--NEDEYVQLA 669 (788)
Q Consensus 628 ~GvPvvt~~g~~~~~r~~~~~l~~~gl~~~ia~--~~~~y~~~a 669 (788)
.++|||.+.+..-.. -....|..+++.+ +.++..+..
T Consensus 74 ~~~~ii~~~~~~~~~-----~~~~~g~~~~l~kp~~~~~l~~~l 112 (119)
T 2j48_A 74 PHPPLVLFLGEPPVD-----PLLTAQASAILSKPLDPQLLLTTL 112 (119)
T ss_dssp SSCCCEEEESSCCSS-----HHHHHHCSEECSSCSTTHHHHHHH
T ss_pred CCCCEEEEeCCCCch-----hhhhcCHHHhccCCCCHHHHHHHH
Confidence 578999887654333 3345577777654 444444433
No 404
>3re2_A Predicted protein; menin, multiple endocrine neoplasia 1, tumor suppressor, MIX lineage leukemia, unknown function; 1.95A {Nematostella vectensis}
Probab=26.04 E-value=3.2e+02 Score=28.04 Aligned_cols=79 Identities=19% Similarity=0.138 Sum_probs=44.6
Q ss_pred HHHHHHHHHHcC---CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCHHHHHHH
Q 003891 204 CNNLGVIYKDRD---NLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAA-----NPTYAEAYNNL 275 (788)
Q Consensus 204 ~~~la~~~~~~g---~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~-----~p~~~~~~~~l 275 (788)
...|-++++..| +|.-|+..+-..-++.|... ...++..|.+++.. ...+..-|..+
T Consensus 238 Qq~LLWLLyD~GhL~rYPmALgnLgDLEe~~pt~g---------------r~~~l~L~~~AI~sa~~yY~n~HvYPYtyl 302 (472)
T 3re2_A 238 QQELLWLLYDMGHIKTYPMAIANLGDLEEISPTPG---------------RPPAEELFKEAITVAKREYSDHHIYPYTYL 302 (472)
T ss_dssp HHHHHHHHHHTTTTTTCHHHHHHHHHHHHHSCCTT---------------SCCHHHHHHHHHHHHHHHSTTCCSHHHHHH
T ss_pred HHHHHHHHHhccchhhCchhhcchhhHHhcCCCCC---------------CCCHHHHHHHHHHHHHHHhccCCccchhhh
Confidence 345555666655 45556665555555554321 11144445555443 23334456667
Q ss_pred HHHHHHcCCHHHHHHHHHHHHh
Q 003891 276 GVLYRDAGSISLAIDAYEQCLK 297 (788)
Q Consensus 276 a~~~~~~g~~~eA~~~~~~al~ 297 (788)
|-.+.+.+++.+|+..+-.+-.
T Consensus 303 gGy~yR~~~~reAl~~WA~Aa~ 324 (472)
T 3re2_A 303 GGYYYRKKKYYEAIASWVDAGY 324 (472)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred hhhhhhcchHHHHHHHHHHHHH
Confidence 7778888888888877776644
No 405
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=25.93 E-value=5.2e+02 Score=26.05 Aligned_cols=28 Identities=14% Similarity=-0.158 Sum_probs=23.0
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCh
Q 003891 276 GVLYRDAGSISLAIDAYEQCLKIDPDSR 303 (788)
Q Consensus 276 a~~~~~~g~~~eA~~~~~~al~l~p~~~ 303 (788)
-...++.+||..|....++.+++.|...
T Consensus 214 M~~a~K~KNy~tAa~fArrLLel~p~~~ 241 (325)
T 3mv2_A 214 MSQHFKHKNFLQASYFAGEFLKIISSGP 241 (325)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCCSSH
T ss_pred HHHHHHhhhHHHHHHHHHHHHhcCCCHH
Confidence 3456788999999999999999998643
No 406
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=25.84 E-value=1e+02 Score=24.83 Aligned_cols=16 Identities=6% Similarity=0.138 Sum_probs=8.5
Q ss_pred HHcCCHHHHHHHHHHH
Q 003891 246 TVQGKMDAAAEMIEKA 261 (788)
Q Consensus 246 ~~~g~~~eA~~~l~ka 261 (788)
-..|+|++|+.+|..+
T Consensus 26 D~~g~y~eAl~~Y~~A 41 (93)
T 1wfd_A 26 DAESRYQQALVCYQEG 41 (93)
T ss_dssp HHTTCHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHH
Confidence 4445555555555544
No 407
>2hlv_A Odorant-binding protein; domain swapping, transport protein; HET: LIK; 1.65A {Bos taurus} PDB: 1gt1_A* 1gt3_A* 1gt4_A* 1gt5_A* 1hn2_A* 1obp_A 1g85_A 1pbo_A*
Probab=25.71 E-value=77 Score=28.20 Aligned_cols=39 Identities=15% Similarity=-0.004 Sum_probs=31.6
Q ss_pred cEEEEecC-CCCCHHHHHHHHHHHHHcCCCCCcEEEcCCc
Q 003891 556 SRLVVKCK-PFCCDSVRHRFLSTLEQLGLESLRVDLLPLI 594 (788)
Q Consensus 556 ~~l~l~~~-~~~~~~~~~~l~~~~~~~gi~~~rv~~~~~~ 594 (788)
-.+||.+. +..++...+.+.+.+++.|++.++|++++..
T Consensus 114 ~~~~llsR~~~~~~e~~~~f~~~~~~~G~~~~~i~~~~~~ 153 (160)
T 2hlv_A 114 ELTELFVKGLNVEDEDLEKFWKLTEDKGIDKKNVVNFLEN 153 (160)
T ss_dssp EEEEEEECSSSCCHHHHHHHHHHHHHTTCCGGGEEETTSC
T ss_pred EEEEEEccCCCCCHHHHHHHHHHHHHcCCCHHHEEECCCC
Confidence 35677765 4557789999999999999999999987653
No 408
>3to5_A CHEY homolog; alpha(5)beta(5), chemotaxis, FLIM, phosphorylation, motor AC signaling protein; 1.65A {Vibrio cholerae}
Probab=25.46 E-value=3.2e+02 Score=23.38 Aligned_cols=108 Identities=11% Similarity=0.147 Sum_probs=65.0
Q ss_pred CcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHHHHhc--ccccEe-ecCC-CCCCchhHHHHhh---
Q 003891 555 NSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAY--SLMDIS-LDTF-PYAGTTTTCESLY--- 627 (788)
Q Consensus 555 ~~~l~l~~~~~~~~~~~~~l~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~--~~~Dv~-Ld~~-~~~g~~t~~eal~--- 627 (788)
+.+++++.+ ++..+.-+...++..|.. .|..... ..+-+..+ ..-|++ +|-. |--.|..+++.+.
T Consensus 12 ~~rILiVDD---~~~~r~~l~~~L~~~G~~--~v~~a~~---g~~al~~~~~~~~DlillD~~MP~mdG~el~~~ir~~~ 83 (134)
T 3to5_A 12 NMKILIVDD---FSTMRRIVKNLLRDLGFN--NTQEADD---GLTALPMLKKGDFDFVVTDWNMPGMQGIDLLKNIRADE 83 (134)
T ss_dssp TCCEEEECS---CHHHHHHHHHHHHHTTCC--CEEEESS---HHHHHHHHHHHCCSEEEEESCCSSSCHHHHHHHHHHST
T ss_pred CCEEEEEeC---CHHHHHHHHHHHHHcCCc--EEEEECC---HHHHHHHHHhCCCCEEEEcCCCCCCCHHHHHHHHHhCC
Confidence 456666653 357888899999999985 2433322 23333332 234555 5655 7777888888875
Q ss_pred --hCCceeecCCCccCccchhHHHhhhCCcccccC--CHHHHHHHHHHH
Q 003891 628 --MGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIAK--NEDEYVQLALQL 672 (788)
Q Consensus 628 --~GvPvvt~~g~~~~~r~~~~~l~~~gl~~~ia~--~~~~y~~~a~~l 672 (788)
..+|||.+.+..-.... .-....|..+++.+ +.++..+..-++
T Consensus 84 ~~~~ipvI~lTa~~~~~~~--~~~~~~Ga~~yl~KP~~~~~L~~~i~~~ 130 (134)
T 3to5_A 84 ELKHLPVLMITAEAKREQI--IEAAQAGVNGYIVKPFTAATLKEKLDKI 130 (134)
T ss_dssp TTTTCCEEEEESSCCHHHH--HHHHHTTCCEEEESSCCHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCHHHH--HHHHHCCCCEEEECCCCHHHHHHHHHHH
Confidence 57999988765432211 12335677777765 566555554443
No 409
>1jr2_A Uroporphyrinogen-III synthase; heme biosynthesis, HEAM biosynthesis, lyase; 1.84A {Homo sapiens} SCOP: c.113.1.1
Probab=25.44 E-value=67 Score=32.01 Aligned_cols=110 Identities=11% Similarity=0.018 Sum_probs=65.8
Q ss_pred CCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCc---HHHHHhc---ccccEeecCCCCCCch--hHHHH
Q 003891 554 PNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLN---HDHMQAY---SLMDISLDTFPYAGTT--TTCES 625 (788)
Q Consensus 554 p~~~l~l~~~~~~~~~~~~~l~~~~~~~gi~~~rv~~~~~~~~~---~~~~~~~---~~~Dv~Ld~~~~~g~~--t~~ea 625 (788)
++.++++..+. ..++.|.+.+++.|+....+..-...+.. ......+ ...|+++-|+|.+--. ..+..
T Consensus 156 ~g~~vLi~rg~----~~r~~L~~~L~~~G~~v~~~~~Y~~~~~~~~~~~~~~~l~~~~~~d~v~ftS~~~v~~f~~~~~~ 231 (286)
T 1jr2_A 156 SALPLLFPCGN----LKREILPKALKDKGIAMESITVYQTVAHPGIQGNLNSYYSQQGVPASITFFSPSGLTYSLKHIQE 231 (286)
T ss_dssp CSSCEEEEESC----GGGCCHHHHHHTTTCCEEEEECEEEEECTTHHHHHHHHHHHHCSCSEEEESSHHHHHHHHHHHHH
T ss_pred CCCeEEEECCh----hhHHHHHHHHHHCCCeeEEEEEEEEeeCCCcHHHHHHHHHhCCCCCEEEEEChHHHHHHHHHHhh
Confidence 44455444322 34567788889999987666543333211 1232333 4579999777754321 11221
Q ss_pred ----hhhCCceeecCCCccCccchhHHHhhhCCccc-cc--CCHHHHHHHHHHHh
Q 003891 626 ----LYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHL-IA--KNEDEYVQLALQLA 673 (788)
Q Consensus 626 ----l~~GvPvvt~~g~~~~~r~~~~~l~~~gl~~~-ia--~~~~~y~~~a~~l~ 673 (788)
...++++++ .|..++..++..|+.-. ++ .+.+.+++......
T Consensus 232 ~~~~~l~~~~i~a------IG~~Ta~~l~~~G~~~~~va~~~~~~~ll~al~~~~ 280 (286)
T 1jr2_A 232 LSGDNIDQIKFAA------IGPTTARALAAQGLPVSCTAESPTPQALATGIRKAL 280 (286)
T ss_dssp HHGGGGGGSEEEE------SSHHHHHHHHHTTCCCSEECSSSSHHHHHHHHHHHT
T ss_pred hccccccCCEEEE------ECHHHHHHHHHcCCCceEecCCCCHHHHHHHHHHHH
Confidence 235778887 67788888999998654 44 47788877766554
No 410
>2ixa_A Alpha-N-acetylgalactosaminidase; NAD, A-ECO conversion, hydrolase; HET: NAD; 2.3A {Flavobacterium meningosepticum} PDB: 2ixb_A*
Probab=25.18 E-value=1.7e+02 Score=31.19 Aligned_cols=84 Identities=10% Similarity=0.015 Sum_probs=50.1
Q ss_pred HHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHHHHhcccccEeecCCCCCCch-hHHHH
Q 003891 547 ARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPYAGTT-TTCES 625 (788)
Q Consensus 547 ~~il~~~p~~~l~l~~~~~~~~~~~~~l~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~~Dv~Ld~~~~~g~~-t~~ea 625 (788)
.+.+.+.|+..|+-+... ++...+.+.+.+.+.|+...+ .+.+...+.++.+.. ..+|+++.+.|..-+. -+..|
T Consensus 36 ~~~l~~~~~~~lvav~d~--~~~~~~~~a~~~~~~g~~~~~-~~~~~~~~~~~ll~~-~~vD~V~i~tp~~~h~~~~~~a 111 (444)
T 2ixa_A 36 VENMARRDDVEIVAFADP--DPYMVGRAQEILKKNGKKPAK-VFGNGNDDYKNMLKD-KNIDAVFVSSPWEWHHEHGVAA 111 (444)
T ss_dssp HHHHHTCTTEEEEEEECS--CHHHHHHHHHHHHHTTCCCCE-EECSSTTTHHHHTTC-TTCCEEEECCCGGGHHHHHHHH
T ss_pred HHHHHhCCCcEEEEEEeC--CHHHHHHHHHHHHhcCCCCCc-eeccCCCCHHHHhcC-CCCCEEEEcCCcHHHHHHHHHH
Confidence 445567799998766654 223334455555567874222 232111123333321 2589888888765544 67889
Q ss_pred hhhCCceee
Q 003891 626 LYMGVPCVT 634 (788)
Q Consensus 626 l~~GvPvvt 634 (788)
|..|++|++
T Consensus 112 l~aGkhV~~ 120 (444)
T 2ixa_A 112 MKAGKIVGM 120 (444)
T ss_dssp HHTTCEEEE
T ss_pred HHCCCeEEE
Confidence 999999997
No 411
>1qkk_A DCTD, C4-dicarboxylate transport transcriptional regulatory protein; receiver domain, 2-component signal transduction; 1.7A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1l5z_A 1l5y_A
Probab=24.93 E-value=3.2e+02 Score=23.23 Aligned_cols=136 Identities=17% Similarity=0.165 Sum_probs=71.8
Q ss_pred cEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHHHHhcc--cccEe-ecCC-CCCCchhHHHHhh---h
Q 003891 556 SRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYS--LMDIS-LDTF-PYAGTTTTCESLY---M 628 (788)
Q Consensus 556 ~~l~l~~~~~~~~~~~~~l~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~--~~Dv~-Ld~~-~~~g~~t~~eal~---~ 628 (788)
.+++++.. ++..+..+...+...|.. |.... +..+.+..+. ..|++ +|.. |-..|...++.+. -
T Consensus 4 ~~ILivdd---~~~~~~~l~~~L~~~g~~---v~~~~---~~~~a~~~l~~~~~dliild~~l~~~~g~~~~~~l~~~~~ 74 (155)
T 1qkk_A 4 PSVFLIDD---DRDLRKAMQQTLELAGFT---VSSFA---SATEALAGLSADFAGIVISDIRMPGMDGLALFRKILALDP 74 (155)
T ss_dssp CEEEEECS---CHHHHHHHHHHHHHTTCE---EEEES---CHHHHHHTCCTTCCSEEEEESCCSSSCHHHHHHHHHHHCT
T ss_pred CEEEEEeC---CHHHHHHHHHHHHHcCcE---EEEEC---CHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHhhCC
Confidence 35555543 346788888899888874 44332 2456665543 35665 5544 3344556666654 4
Q ss_pred CCceeecCCCccCccchhHHHhhhCCcccccC--CHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHH
Q 003891 629 GVPCVTMAGSVHAHNVGVSLLTKVGLKHLIAK--NEDEYVQLALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALGLE 706 (788)
Q Consensus 629 GvPvvt~~g~~~~~r~~~~~l~~~gl~~~ia~--~~~~y~~~a~~l~~d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e 706 (788)
++|||.+.+..-.. ...-....|..+++.. +.++......++.... +++. ......+.+|
T Consensus 75 ~~pii~ls~~~~~~--~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~~~~~----~~~~------------~~~~~~~~~~ 136 (155)
T 1qkk_A 75 DLPMILVTGHGDIP--MAVQAIQDGAYDFIAKPFAADRLVQSARRAEEKR----RLVM------------ENRSLRRAAE 136 (155)
T ss_dssp TSCEEEEECGGGHH--HHHHHHHTTCCEEEESSCCHHHHHHHHHHHHHHH----HHHH------------HHHHHHHHHH
T ss_pred CCCEEEEECCCChH--HHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHHHH----HHHH------------HHHHHHHHHH
Confidence 79999887653221 1122334688887754 5565555444433211 1110 1234466777
Q ss_pred HHHHHHHHHHhc
Q 003891 707 STYRNMWHRYCK 718 (788)
Q Consensus 707 ~~~~~~~~~~~~ 718 (788)
+.-+.+|.-+..
T Consensus 137 ~~~~~l~~~~~~ 148 (155)
T 1qkk_A 137 AASEGLKLAAAL 148 (155)
T ss_dssp HHHHHC------
T ss_pred HHHHHHhhchhh
Confidence 777777765443
No 412
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=24.90 E-value=1.5e+02 Score=28.90 Aligned_cols=103 Identities=12% Similarity=0.102 Sum_probs=57.9
Q ss_pred CCCeeEeeccCCcccChhHHhhhhhhcccCCCceEEEEEeccccCChhhHHHHHHHhhhCCeEEEccCCCHHHHHHHHHh
Q 003891 352 ERPLVIGYVSPDYFTHSVSYFIEAPLVYHDYQNYKVVVYSAVVKADAKTIRFREKVMKKGGIWRDIYGIDEKKVAAMVRE 431 (788)
Q Consensus 352 ~~~lriGyvS~df~~H~v~~~~~~~l~~~dr~~fev~~Y~~~~~~D~~t~~~r~~~~~~~~~~~~~~~~~~~~~a~~i~~ 431 (788)
++..+||++.+++.+.-...++.++.......++++.++.... |...+ .+..+.+.+
T Consensus 6 ~~~~~Igvv~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~--~~~~~---------------------~~~~~~l~~ 62 (291)
T 3egc_A 6 KRSNVVGLIVSDIENVFFAEVASGVESEARHKGYSVLLANTAE--DIVRE---------------------REAVGQFFE 62 (291)
T ss_dssp -CCCEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEEEECTT--CHHHH---------------------HHHHHHHHH
T ss_pred CCCcEEEEEECCCcchHHHHHHHHHHHHHHHCCCEEEEEeCCC--CHHHH---------------------HHHHHHHHH
Confidence 4567899998887654455666666666666788888776432 22111 235566778
Q ss_pred CCCcEEEeCCCCCCCCcccccccCCCCeEEecccCCCCCCCCCccEEEec
Q 003891 432 DKIDILVELTGHTANNKLGMMACQPAPVQVTWIGYPNTTGLPTIDYRITD 481 (788)
Q Consensus 432 d~idilvdl~g~t~~~~~~~~a~r~Apvq~~~~g~~~ttg~~~~Dy~i~d 481 (788)
.++|-+|-..... ....+-.++-+.+-+..++.+... +.++++.+|
T Consensus 63 ~~vdgiIi~~~~~--~~~~~~~~~~~~iPvV~~~~~~~~--~~~~~V~~D 108 (291)
T 3egc_A 63 RRVDGLILAPSEG--EHDYLRTELPKTFPIVAVNRELRI--PGCGAVLSE 108 (291)
T ss_dssp TTCSEEEECCCSS--CCHHHHHSSCTTSCEEEESSCCCC--TTCEEEEEC
T ss_pred CCCCEEEEeCCCC--ChHHHHHhhccCCCEEEEecccCC--CCCCEEEEC
Confidence 8999888544333 222222234445555555544321 334555544
No 413
>3u5c_A 40S ribosomal protein S0-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_A 3o30_A 3o2z_A 3u5g_A 3jyv_B* 1s1h_B
Probab=24.88 E-value=90 Score=30.38 Aligned_cols=79 Identities=13% Similarity=0.168 Sum_probs=47.8
Q ss_pred cEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHHHHhcccccEeecCCCCCCchhHHHHhhhCCceeec
Q 003891 556 SRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTM 635 (788)
Q Consensus 556 ~~l~l~~~~~~~~~~~~~l~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~~Dv~Ld~~~~~g~~t~~eal~~GvPvvt~ 635 (788)
..++++|.. .....-+.+.+++.|-..-.=+|+|...... ....+..=|+.+-+-|-.-+....||-.+|+|||++
T Consensus 71 ~~vlfVgTk---~~~q~~V~k~A~~~g~~~v~~rwlgGtLTN~-~t~~f~~PdllvV~Dp~~d~~ai~EA~~l~IP~Ial 146 (252)
T 3u5c_A 71 EDVVAISSR---TFGQRAVLKFAAHTGATPIAGRFTPGSFTNY-ITRSFKEPRLVIVTDPRSDAQAIKEASYVNIPVIAL 146 (252)
T ss_dssp GGEEEEECS---HHHHHHHHHHHHHSSCEEEESCCCTTSSSCT-TSTTCCCCSEEEESCTTTTHHHHHHHHTTTCCEEEE
T ss_pred CEEEEEeCC---cHHHHHHHHHHHHhCCceecCcccCCcccCh-hhhhccCCceEEEeCCccchHHHHHHHHcCCCEEEE
Confidence 344455543 1333445555555564321123555543222 124566778887777788899999999999999987
Q ss_pred CCC
Q 003891 636 AGS 638 (788)
Q Consensus 636 ~g~ 638 (788)
-..
T Consensus 147 ~DT 149 (252)
T 3u5c_A 147 TDL 149 (252)
T ss_dssp ECT
T ss_pred EcC
Confidence 653
No 414
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=24.57 E-value=96 Score=24.63 Aligned_cols=29 Identities=14% Similarity=0.180 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 003891 24 AIVLTDLGTSLKLAGNTQDGIQKYYEALK 52 (788)
Q Consensus 24 a~~l~~lg~~~~~~g~~~~A~~~~~~al~ 52 (788)
|..+...|...-..|++++|+.+|.++++
T Consensus 16 A~~lv~~Ave~D~~g~y~eAl~lY~~Aie 44 (86)
T 4a5x_A 16 AATVLKRAVELDSESRYPQALVCYQEGID 44 (86)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 33455555555666777777666666654
No 415
>4f3y_A DHPR, dihydrodipicolinate reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis}
Probab=24.55 E-value=50 Score=32.85 Aligned_cols=30 Identities=17% Similarity=-0.030 Sum_probs=22.4
Q ss_pred ccccEeecCCC-CCCchhHHHHhhhCCceee
Q 003891 605 SLMDISLDTFP-YAGTTTTCESLYMGVPCVT 634 (788)
Q Consensus 605 ~~~Dv~Ld~~~-~~g~~t~~eal~~GvPvvt 634 (788)
..+||++|-.+ -..-..+..++..|+|||+
T Consensus 72 ~~~DVVIDfT~p~a~~~~~~~al~~G~~vVi 102 (272)
T 4f3y_A 72 AEADYLIDFTLPEGTLVHLDAALRHDVKLVI 102 (272)
T ss_dssp HHCSEEEECSCHHHHHHHHHHHHHHTCEEEE
T ss_pred cCCCEEEEcCCHHHHHHHHHHHHHcCCCEEE
Confidence 46999999653 3334456778999999997
No 416
>1k66_A Phytochrome response regulator RCPB; CHEY homologue, homodimer, APO-protein, (beta/alpha)5, signaling protein; 1.75A {Tolypothrix SP} SCOP: c.23.1.1
Probab=24.06 E-value=3.1e+02 Score=22.82 Aligned_cols=96 Identities=16% Similarity=0.155 Sum_probs=54.6
Q ss_pred cEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHHHHhc------------ccccEe-ecCC-CCCCchh
Q 003891 556 SRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAY------------SLMDIS-LDTF-PYAGTTT 621 (788)
Q Consensus 556 ~~l~l~~~~~~~~~~~~~l~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~------------~~~Dv~-Ld~~-~~~g~~t 621 (788)
.+++++.. ++..+..+...+.+.|.. ..|..... ..+.+..+ ...|++ +|.. |-..|..
T Consensus 7 ~~iLivdd---~~~~~~~l~~~L~~~g~~-~~v~~~~~---~~~al~~l~~~~~~~~~~~~~~~dlvi~D~~l~~~~g~~ 79 (149)
T 1k66_A 7 QPLLVVED---SDEDFSTFQRLLQREGVV-NPIYRCIT---GDQALDFLYQTGSYCNPDIAPRPAVILLDLNLPGTDGRE 79 (149)
T ss_dssp SCEEEECC---CHHHHHHHHHHHHHTTBC-SCEEEECS---HHHHHHHHHTCCSSSCGGGCCCCSEEEECSCCSSSCHHH
T ss_pred ccEEEEEC---CHHHHHHHHHHHHHcCCC-ceEEEECC---HHHHHHHHHhcccccCcccCCCCcEEEEECCCCCCCHHH
Confidence 34555543 346788899999998874 34554433 34555444 345766 5544 3345667
Q ss_pred HHHHhh-----hCCceeecCCCccCccchhHHHhhhCCcccccC
Q 003891 622 TCESLY-----MGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIAK 660 (788)
Q Consensus 622 ~~eal~-----~GvPvvt~~g~~~~~r~~~~~l~~~gl~~~ia~ 660 (788)
.++.+. .++|||.+.+..-.. ...-....|..+++.+
T Consensus 80 ~~~~l~~~~~~~~~~ii~~t~~~~~~--~~~~~~~~g~~~~l~k 121 (149)
T 1k66_A 80 VLQEIKQDEVLKKIPVVIMTTSSNPK--DIEICYSYSISSYIVK 121 (149)
T ss_dssp HHHHHTTSTTGGGSCEEEEESCCCHH--HHHHHHHTTCSEEEEC
T ss_pred HHHHHHhCcccCCCeEEEEeCCCCHH--HHHHHHHCCCCEEEeC
Confidence 777765 568999876643211 1112224466666544
No 417
>1bj7_A D 2; allergen, lipocalin; 1.80A {Bos taurus} SCOP: b.60.1.1
Probab=24.01 E-value=73 Score=28.21 Aligned_cols=38 Identities=8% Similarity=-0.037 Sum_probs=30.3
Q ss_pred cEEEEecC-CCCCHHHHHHHHHHHHHcCCCCCcEEEcCC
Q 003891 556 SRLVVKCK-PFCCDSVRHRFLSTLEQLGLESLRVDLLPL 593 (788)
Q Consensus 556 ~~l~l~~~-~~~~~~~~~~l~~~~~~~gi~~~rv~~~~~ 593 (788)
-.+||.+. +..++...+++.+.+++.|++.+++++++.
T Consensus 112 ~~~~llsR~~~l~~e~~~~f~~~~~~~G~~~~~i~~~~~ 150 (156)
T 1bj7_A 112 KMTEGLAKGTSFTPEELEKYQQLNSERGVPNENIENLIK 150 (156)
T ss_dssp EEEEEEESSSCCCHHHHHHHHHHHHHHTCCGGGEEECGG
T ss_pred EEEEEEecCCCCCHHHHHHHHHHHHHcCCCHHHEEecCC
Confidence 35677764 345678899999999999999999988765
No 418
>2hqr_A Putative transcriptional regulator; phosporylation-independent response regulator, H. pylori, SY dimer, signaling protein; NMR {Helicobacter pylori}
Probab=24.00 E-value=3e+02 Score=25.41 Aligned_cols=96 Identities=10% Similarity=0.030 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHHHHhc--ccccEeecCCCCCCchhHHHHhhh---CCceeecCCCccCc
Q 003891 568 DSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAY--SLMDISLDTFPYAGTTTTCESLYM---GVPCVTMAGSVHAH 642 (788)
Q Consensus 568 ~~~~~~l~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~--~~~Dv~Ld~~~~~g~~t~~eal~~---GvPvvt~~g~~~~~ 642 (788)
+..+..+...+...|.. |..... ..+.+..+ ...|++| .|-..|...++.+.. .+|||.+.+..-..
T Consensus 10 ~~~~~~l~~~L~~~g~~---v~~~~~---~~~al~~l~~~~~dlvi--lp~~~g~~~~~~lr~~~~~~~ii~lt~~~~~~ 81 (223)
T 2hqr_A 10 SVLGGEIEKGLNVKGFM---ADVTES---LEDGEYLMDIRNYDLVM--VSDKNALSFVSRIKEKHSSIVVLVSSDNPTSE 81 (223)
T ss_dssp HHHHHHHHHHHGGGTCC---EEEESS---HHHHHHHHTTSCCSEEE--ECCTTHHHHHHHHHHHCTTSEEEEEESSCCHH
T ss_pred HHHHHHHHHHHHHCCcE---EEEECC---HHHHHHHHhcCCCCEEE--eCCCCHHHHHHHHHhCCCCCcEEEEECCCCHH
Confidence 46788888888887774 443322 45555544 3479999 666667777776653 79999887653322
Q ss_pred cchhHHHhhhCCcccccC---CHHHHHHHHHHHh
Q 003891 643 NVGVSLLTKVGLKHLIAK---NEDEYVQLALQLA 673 (788)
Q Consensus 643 r~~~~~l~~~gl~~~ia~---~~~~y~~~a~~l~ 673 (788)
.. .-....|..+++.+ +.++..+...++.
T Consensus 82 ~~--~~~~~~Ga~~~l~Kp~~~~~~L~~~i~~~~ 113 (223)
T 2hqr_A 82 EE--VHAFEQGADDYIAKPYRSIKALVARIEARL 113 (223)
T ss_dssp HH--HHHHHHTCSEEEETTCSCTHHHHHHHHHHT
T ss_pred HH--HHHHHcCCCEEEECCCCCHHHHHHHHHHHh
Confidence 11 12234577777754 4555555544443
No 419
>1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11
Probab=23.67 E-value=37 Score=34.75 Aligned_cols=29 Identities=17% Similarity=0.095 Sum_probs=23.6
Q ss_pred ccccEeecCCCCCCchhHHHHhhhCCceee
Q 003891 605 SLMDISLDTFPYAGTTTTCESLYMGVPCVT 634 (788)
Q Consensus 605 ~~~Dv~Ld~~~~~g~~t~~eal~~GvPvvt 634 (788)
..-|++|||| .|.|||+..|+-+|.-.|.
T Consensus 251 ~~~~~VlDpF-~GsGtt~~aa~~~gr~~ig 279 (323)
T 1boo_A 251 EPDDLVVDIF-GGSNTTGLVAERESRKWIS 279 (323)
T ss_dssp CTTCEEEETT-CTTCHHHHHHHHTTCEEEE
T ss_pred CCCCEEEECC-CCCCHHHHHHHHcCCCEEE
Confidence 4569999995 3668999999999977764
No 420
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=23.66 E-value=3.8e+02 Score=27.92 Aligned_cols=59 Identities=7% Similarity=0.069 Sum_probs=30.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh-------CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003891 238 LNNLGVVYTVQGKMDAAAEMIEKAIAA-------NPT-YAEAYNNLGVLYRDAGSISLAIDAYEQCL 296 (788)
Q Consensus 238 ~~~la~~~~~~g~~~eA~~~l~kal~~-------~p~-~~~~~~~la~~~~~~g~~~eA~~~~~~al 296 (788)
...++..|...|+.++|..+++++-.. +|. ....+...+..|...+++.++....-.++
T Consensus 130 ~~~i~~~yl~~~d~~~a~~~l~~~~~~l~~~~~~~~~v~~~~y~~~~~~~~~~~~~a~~y~~~l~~l 196 (393)
T 4b4t_O 130 DSEIARTYLLKNDLVKARDLLDDLEKTLDKKDSIPLRITNSFYSTNSQYFKFKNDFNSFYYTSLLYL 196 (393)
T ss_dssp HHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhhhccCCccHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 344555566666666666666555432 110 12334445555566666665555544444
No 421
>3ldt_A Outer membrane protein, OMPA family protein; OMPA-like domain, PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.30A {Legionella pneumophila}
Probab=23.59 E-value=1.4e+02 Score=27.14 Aligned_cols=53 Identities=17% Similarity=0.089 Sum_probs=38.3
Q ss_pred HHHHHHHHHHhHcCCcEEEEecCCC--CCH--------HHHHHHHHHHHHcCCCCCcEEEcCC
Q 003891 541 KVLQVWARILCAVPNSRLVVKCKPF--CCD--------SVRHRFLSTLEQLGLESLRVDLLPL 593 (788)
Q Consensus 541 ~~~~~~~~il~~~p~~~l~l~~~~~--~~~--------~~~~~l~~~~~~~gi~~~rv~~~~~ 593 (788)
..++-++.+|+..|+.++.|.|..- ++. .-...+.+.+.+.||+++|+...|.
T Consensus 71 ~~L~~la~~l~~~~~~~i~I~GhTD~~G~~~~N~~LS~~RA~aV~~~L~~~Gv~~~ri~~~g~ 133 (169)
T 3ldt_A 71 PGLNNVIRLLNFYPQSTIYVAGFTDNVGSRSHKRKLSQAQAETMMTFLWANGIAAKRLKAEGY 133 (169)
T ss_dssp HHHHHHHHHHTTCTTSCEEEEEECTTSCCC--CHHHHHHHHHHHHHHHHHTTCCTTTEEECCT
T ss_pred HHHHHHHHHHHhCCCCeEEEEeEeCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCHHHEEEEEE
Confidence 4667778889999999988876421 111 1124577788889999999988775
No 422
>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc, PSI-biology, structural genomics; 1.91A {Legionella pneumophila subsp}
Probab=22.99 E-value=1.2e+02 Score=29.82 Aligned_cols=40 Identities=0% Similarity=-0.148 Sum_probs=26.8
Q ss_pred CCeeEeeccCCcccChhHHhhhhhhcccCCCceEEEEEec
Q 003891 353 RPLVIGYVSPDYFTHSVSYFIEAPLVYHDYQNYKVVVYSA 392 (788)
Q Consensus 353 ~~lriGyvS~df~~H~v~~~~~~~l~~~dr~~fev~~Y~~ 392 (788)
.+++||++.++..+.-...++.++.......++++.++..
T Consensus 2 ~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~ 41 (297)
T 3rot_A 2 VRDKYYLITHGSQDPYWTSLFQGAKKAAEELKVDLQILAP 41 (297)
T ss_dssp -CCEEEEECSCCCSHHHHHHHHHHHHHHHHHTCEEEEECC
T ss_pred ceEEEEEEecCCCCchHHHHHHHHHHHHHHhCcEEEEECC
Confidence 3578999998875444455666666665666788877654
No 423
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=22.88 E-value=1.1e+02 Score=25.87 Aligned_cols=33 Identities=21% Similarity=0.289 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 003891 217 LDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAA 264 (788)
Q Consensus 217 ~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~ 264 (788)
.++|+.++.+|++ .-..|+|++|+.+|..+++.
T Consensus 15 l~kAi~lv~~Ave---------------~D~ag~y~eAl~lY~~Aie~ 47 (117)
T 2cpt_A 15 LQKAIDLASKAAQ---------------EDKAGNYEEALQLYQHAVQY 47 (117)
T ss_dssp HHHHHHHHHHHHH---------------HHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH---------------HHHccCHHHHHHHHHHHHHH
No 424
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=22.74 E-value=1.4e+02 Score=24.10 Aligned_cols=28 Identities=18% Similarity=0.273 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 003891 24 AIVLTDLGTSLKLAGNTQDGIQKYYEAL 51 (788)
Q Consensus 24 a~~l~~lg~~~~~~g~~~~A~~~~~~al 51 (788)
|.-+...|...-..|+|++|+.+|.+++
T Consensus 15 Ai~lv~~Ave~D~~g~y~eAl~~Y~~Ai 42 (93)
T 1wfd_A 15 AVAVLKRAVELDAESRYQQALVCYQEGI 42 (93)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 3334444444455555555555555444
No 425
>3ors_A N5-carboxyaminoimidazole ribonucleotide mutase; isomerase, isomerase,biosynthetic protein; 1.45A {Staphylococcus aureus subsp}
Probab=22.59 E-value=4.2e+02 Score=23.76 Aligned_cols=94 Identities=11% Similarity=-0.037 Sum_probs=54.5
Q ss_pred CCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHHHHhc-----ccccEeecCCCCCCchhHHHHhhhCCceeecCCC
Q 003891 564 PFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAY-----SLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGS 638 (788)
Q Consensus 564 ~~~~~~~~~~l~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~-----~~~Dv~Ld~~~~~g~~t~~eal~~GvPvvt~~g~ 638 (788)
+..+-+.-+.....++.+|+.. .+...+--...++...+. +.++|++-----.++...+=|-..-+|||-.+-.
T Consensus 12 s~SD~~v~~~a~~~l~~~gi~~-ev~V~SaHR~p~~~~~~~~~a~~~g~~ViIa~AG~aa~LpgvvA~~t~~PVIgVP~~ 90 (163)
T 3ors_A 12 SSSDWKIMQESCNMLDYFEIPY-EKQVVSAHRTPKMMVQFASEARERGINIIIAGAGGAAHLPGMVASLTTLPVIGVPIE 90 (163)
T ss_dssp CGGGHHHHHHHHHHHHHTTCCE-EEEECCTTTSHHHHHHHHHHTTTTTCCEEEEEEESSCCHHHHHHHHCSSCEEEEEEC
T ss_pred cHHHHHHHHHHHHHHHHcCCCE-EEEEECCcCCHHHHHHHHHHHHhCCCcEEEEECCchhhhHHHHHhccCCCEEEeeCC
Confidence 3345567778888899999984 455554433233333332 3478887544445555555555677999876632
Q ss_pred ccCccchhHHHhhhCCcccc
Q 003891 639 VHAHNVGVSLLTKVGLKHLI 658 (788)
Q Consensus 639 ~~~~r~~~~~l~~~gl~~~i 658 (788)
.-.-.--.++|..+.+|.-|
T Consensus 91 ~~~l~G~dsLlS~vqmp~Gv 110 (163)
T 3ors_A 91 TKSLKGIDSLLSIVQMPGGI 110 (163)
T ss_dssp CTTTTTHHHHHHHHTCCTTS
T ss_pred CCCCCCHHHHHHHhhCCCCC
Confidence 21111234677777776543
No 426
>3cyp_B Chemotaxis protein MOTB; bacterial flagellar motor, peptidoglycan binding, bacterial flagellum, flagellar rotation, inner membrane, membrane; 1.60A {Helicobacter pylori} PDB: 3cyq_B* 3imp_B
Probab=22.54 E-value=1.3e+02 Score=26.16 Aligned_cols=58 Identities=16% Similarity=0.199 Sum_probs=39.1
Q ss_pred Cc-CCHH---HHHHHHHHHhHcC-CcEEEEecCCC--CC--HH----------HHHHHHHHHHHcCCCCCcEEEcCC
Q 003891 536 AK-ITPK---VLQVWARILCAVP-NSRLVVKCKPF--CC--DS----------VRHRFLSTLEQLGLESLRVDLLPL 593 (788)
Q Consensus 536 ~K-~~~~---~~~~~~~il~~~p-~~~l~l~~~~~--~~--~~----------~~~~l~~~~~~~gi~~~rv~~~~~ 593 (788)
.. ++|. .++-++++|+..| +..+.|.|..- +. .. -...+.+.+...||+++||...|.
T Consensus 12 ~~~l~~~~~~~L~~ia~~l~~~p~~~~i~I~GhtD~~g~~~~~~~~N~~LS~~RA~aV~~~L~~~Gv~~~ri~~~g~ 88 (138)
T 3cyp_B 12 SDAINQDMMLYIERIAKIIQKLPKRVHINVRGFTDDTPLVKTRFKSHYELAANRAYRVMKVLIQYGVNPNQLSFSSY 88 (138)
T ss_dssp CCCCCHHHHHHHHHHHHHHTTSCTTCEEEEEEECCCCCC----CCSHHHHHHHHHHHHHHHHHHTTCCGGGEEEEEC
T ss_pred cccCCHHHHHHHHHHHHHHHhCCCCcEEEEEEecCCCCcccccchhHHHHHHHHHHHHHHHHHHcCCCHHHEEEEEE
Confidence 44 5654 5666678899999 88999887421 11 11 123566777788999999987765
No 427
>3mz0_A Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; MYO-inositol dehydrogenase, bsidh, oxidoreductase; HET: MSE PGE; 1.54A {Bacillus subtilis} PDB: 3nt2_A* 3nt4_A* 3nt5_A* 3nto_A* 3ntq_A* 3ntr_A*
Probab=22.51 E-value=1.3e+02 Score=30.73 Aligned_cols=77 Identities=10% Similarity=0.021 Sum_probs=48.8
Q ss_pred HHHHHh-HcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHHHHhcccccEeecCCCCCCc-hhHH
Q 003891 546 WARILC-AVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPYAGT-TTTC 623 (788)
Q Consensus 546 ~~~il~-~~p~~~l~l~~~~~~~~~~~~~l~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~~Dv~Ld~~~~~g~-~t~~ 623 (788)
..+.+. ..|+..++-+... ..++.++..++.|+. .++ + .+.++.+.. ..+|+++.+.|-.-+ ..+.
T Consensus 17 ~~~~l~~~~~~~~l~av~d~-----~~~~~~~~~~~~g~~-~~~-~----~~~~~ll~~-~~~D~V~i~tp~~~h~~~~~ 84 (344)
T 3mz0_A 17 HINRITNKLSGAEIVAVTDV-----NQEAAQKVVEQYQLN-ATV-Y----PNDDSLLAD-ENVDAVLVTSWGPAHESSVL 84 (344)
T ss_dssp HHHHHHHTCSSEEEEEEECS-----SHHHHHHHHHHTTCC-CEE-E----SSHHHHHHC-TTCCEEEECSCGGGHHHHHH
T ss_pred HHHHHHhhCCCcEEEEEEcC-----CHHHHHHHHHHhCCC-Cee-e----CCHHHHhcC-CCCCEEEECCCchhHHHHHH
Confidence 344555 6799988866543 234555666777863 222 1 224444442 348888877776554 4678
Q ss_pred HHhhhCCceee
Q 003891 624 ESLYMGVPCVT 634 (788)
Q Consensus 624 eal~~GvPvvt 634 (788)
+|+..|++|++
T Consensus 85 ~al~~Gk~vl~ 95 (344)
T 3mz0_A 85 KAIKAQKYVFC 95 (344)
T ss_dssp HHHHTTCEEEE
T ss_pred HHHHCCCcEEE
Confidence 89999999997
No 428
>3iz6_A 40S ribosomal protein SA (S2P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=22.45 E-value=87 Score=31.27 Aligned_cols=79 Identities=15% Similarity=0.176 Sum_probs=46.8
Q ss_pred CCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHHHHhcccccEeecCCCCCCchhHHHHhhhCCcee
Q 003891 554 PNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCV 633 (788)
Q Consensus 554 p~~~l~l~~~~~~~~~~~~~l~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~~Dv~Ld~~~~~g~~t~~eal~~GvPvv 633 (788)
|. .++++|.. .....-+.+.+++.|-..-.-+|+|....+. ....++.=|+++-+-|-.-+....||-.+|+|||
T Consensus 75 ~~-~ILfVgTk---~~aq~aV~k~A~~tG~~yV~~RWlgGtLTN~-~t~~f~ePdllvV~Dp~~d~qAI~EA~~lnIPtI 149 (305)
T 3iz6_A 75 PQ-DIIVQSAR---PYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQ-LQTSFSEPRLLILTDPRTDHQPIKESALGNIPTI 149 (305)
T ss_dssp SC-CEEEECCS---HHHHHHHHHHHHHHTCEEECSCCCTTTTTTT-TTSCSSCCSEEEESCTTTTHHHHHHHHHHTCCEE
T ss_pred CC-eEEEEeCc---HHHHHHHHHHHHHhCCccccCcccCCcccCc-ccccccCCceeEEeCcccchHHHHHHHHcCCCEE
Confidence 44 44455543 1233344455555554321123455443221 2234566788777778888999999999999999
Q ss_pred ecCC
Q 003891 634 TMAG 637 (788)
Q Consensus 634 t~~g 637 (788)
++-.
T Consensus 150 ALvD 153 (305)
T 3iz6_A 150 AFCD 153 (305)
T ss_dssp EEEC
T ss_pred EEEc
Confidence 8764
No 429
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=22.44 E-value=2.1e+02 Score=27.60 Aligned_cols=42 Identities=10% Similarity=0.079 Sum_probs=30.9
Q ss_pred CCCeeEeeccCCcccChhHHhhhhhhcccCCCceEEEEEecc
Q 003891 352 ERPLVIGYVSPDYFTHSVSYFIEAPLVYHDYQNYKVVVYSAV 393 (788)
Q Consensus 352 ~~~lriGyvS~df~~H~v~~~~~~~l~~~dr~~fev~~Y~~~ 393 (788)
++..+||++.++..+.-...++.++.......++++.++...
T Consensus 5 ~~s~~Igvi~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~ 46 (276)
T 3jy6_A 5 QSSKLIAVIVANIDDYFSTELFKGISSILESRGYIGVLFDAN 46 (276)
T ss_dssp CCCCEEEEEESCTTSHHHHHHHHHHHHHHHTTTCEEEEEECT
T ss_pred CCCcEEEEEeCCCCchHHHHHHHHHHHHHHHCCCEEEEEeCC
Confidence 456789999988765555666777777677778999887654
No 430
>1dzk_A PIG OBP, odorant-binding protein; lipocalin, transport, olfaction, sensory transduction; HET: PRZ; 1.48A {Sus scrofa} SCOP: b.60.1.1 PDB: 1dzj_A* 1dzm_A* 1dzp_A* 1e00_A* 1e02_A* 1e06_A* 1hqp_A* 1a3y_A
Probab=22.40 E-value=88 Score=27.62 Aligned_cols=38 Identities=11% Similarity=-0.088 Sum_probs=30.5
Q ss_pred cEEEEecCC-CCCHHHHHHHHHHHHHcCCCCCcEEEcCC
Q 003891 556 SRLVVKCKP-FCCDSVRHRFLSTLEQLGLESLRVDLLPL 593 (788)
Q Consensus 556 ~~l~l~~~~-~~~~~~~~~l~~~~~~~gi~~~rv~~~~~ 593 (788)
-.+||.+.. ..++...+.+.+.++..|++.++|++++.
T Consensus 113 ~~~~llsR~~~~~~e~~~~f~~~~~~~G~~~~~i~~~~~ 151 (157)
T 1dzk_A 113 IMTGLLGKGTDIEDQDLEKFKEVTRENGIPEENIVNIIE 151 (157)
T ss_dssp EEEEEEESSSCCCHHHHHHHHHHHHHTTCCGGGEEESGG
T ss_pred EEEEEEecCCCCCHHHHHHHHHHHHHcCCCHHHEEECCc
Confidence 356777643 45678899999999999999999998765
No 431
>3czc_A RMPB; alpha/beta sandwich, phosphotransferase system, transferase, transport; 2.02A {Streptococcus mutans}
Probab=22.36 E-value=2.2e+02 Score=23.45 Aligned_cols=58 Identities=16% Similarity=0.213 Sum_probs=35.9
Q ss_pred cEEEEec-CCCCCHHH-HHHHHHHHHHcCCCCCcEEEcCCcCCcHHHHHhcccccEeecCCCCC
Q 003891 556 SRLVVKC-KPFCCDSV-RHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPYA 617 (788)
Q Consensus 556 ~~l~l~~-~~~~~~~~-~~~l~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~~Dv~Ld~~~~~ 617 (788)
-++++++ .|.++..+ ..++++.+.+.|++.-.|...+ ..++-.....+|+++.|.+..
T Consensus 19 ~kIlvvC~sG~gTS~m~~~kl~~~~~~~gi~~~~i~~~~----~~~~~~~~~~~DlIi~t~~l~ 78 (110)
T 3czc_A 19 VKVLTACGNGMGSSMVIKMKVENALRQLGVSDIESASCS----VGEAKGLASNYDIVVASNHLI 78 (110)
T ss_dssp EEEEEECCCCHHHHHHHHHHHHHHHHHTTCCCEEEEEEC----HHHHHHHGGGCSEEEEETTTG
T ss_pred cEEEEECCCcHHHHHHHHHHHHHHHHHcCCCeEEEEEee----HHHHhhccCCCcEEEECCchH
Confidence 4455554 44444444 4499999999999621233322 344544567799999888764
No 432
>3u84_A Menin; MLL, JUND, ledgf, TPR, transglutaminase-like, transcription, epigenetics, cancer; 2.50A {Homo sapiens} PDB: 3u85_A 3u86_A 3u88_A*
Probab=22.33 E-value=3.6e+02 Score=28.23 Aligned_cols=79 Identities=9% Similarity=0.029 Sum_probs=41.8
Q ss_pred HHHHHHHHHcC---ChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----CCCCHHHHHHHH
Q 003891 171 YNLGVAYGEML---KFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSI-----KPNFSQSLNNLG 242 (788)
Q Consensus 171 ~~la~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~-----~p~~~~~~~~la 242 (788)
..|-++++..| +|..|+-.+-..-+..|.. |+ ..++.+|.+++.. ...+..-|..+|
T Consensus 261 q~LLWlLyd~GhL~rYPmALgnLgDLEe~~pt~--------------gr-~~~~~L~~~AI~sa~~~Y~n~HvYPYtYlg 325 (550)
T 3u84_A 261 QKLLWLLYDLGHLERYPMALGNLADLEELEPTP--------------GR-PDPLTLYHKGIASAKTYYRDEHIYPYMYLA 325 (550)
T ss_dssp HHHHHHHHHTTTTTTCHHHHHHHHHHHHHSCCT--------------TC-CCHHHHHHHHHHHHHHHSTTCCSHHHHHHH
T ss_pred HHHHHHHHhccchhhCchhhcchhhHhhcCCCC--------------CC-CCHHHHHHHHHHHHHHHhccCCccceeecc
Confidence 44555555555 3555555555554444431 11 1144444444433 233445566666
Q ss_pred HHHHHcCCHHHHHHHHHHHHHh
Q 003891 243 VVYTVQGKMDAAAEMIEKAIAA 264 (788)
Q Consensus 243 ~~~~~~g~~~eA~~~l~kal~~ 264 (788)
-.+++.+++.+|+..+-.+-..
T Consensus 326 Gy~yR~~~~reAl~~WA~Aa~V 347 (550)
T 3u84_A 326 GYHCRNRNVREALQAWADTATV 347 (550)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred hhhhhcchHHHHHHHHHHHHHH
Confidence 6777777777777776666543
No 433
>2yvq_A Carbamoyl-phosphate synthase; conserved hypothetical protein, structural genomics, NPPSFA; 1.98A {Homo sapiens}
Probab=22.30 E-value=3.8e+02 Score=23.23 Aligned_cols=91 Identities=13% Similarity=0.116 Sum_probs=52.9
Q ss_pred EEEecCCCCcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCc------CCcHHHH
Q 003891 528 TFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLI------LLNHDHM 601 (788)
Q Consensus 528 ~f~~~~~~~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~~~~l~~~~~~~gi~~~rv~~~~~~------~~~~~~~ 601 (788)
+|-+++...| ++++. |++-+... +-.|+--+ ... +.+++.||+..+|...+.- +...+.+
T Consensus 27 vliSv~d~dK--~~l~~-~a~~l~~l-Gf~i~AT~------GTa----~~L~~~Gi~v~~v~k~~egg~~~~~~~i~d~i 92 (143)
T 2yvq_A 27 ILIGIQQSFR--PRFLG-VAEQLHNE-GFKLFATE------ATS----DWLNANNVPATPVAWPSQEGQNPSLSSIRKLI 92 (143)
T ss_dssp EEEECCGGGH--HHHHH-HHHHHHTT-TCEEEEEH------HHH----HHHHHTTCCCEEECCGGGC-----CBCHHHHH
T ss_pred EEEEecccch--HHHHH-HHHHHHHC-CCEEEECc------hHH----HHHHHcCCeEEEEEeccCCCcccccccHHHHH
Confidence 5778776555 55555 45555554 34444322 222 3456789997777654331 3233334
Q ss_pred HhcccccEeecCCCCCCchhHHH-------HhhhCCceee
Q 003891 602 QAYSLMDISLDTFPYAGTTTTCE-------SLYMGVPCVT 634 (788)
Q Consensus 602 ~~~~~~Dv~Ld~~~~~g~~t~~e-------al~~GvPvvt 634 (788)
.. ..+|+++.+.- ++....-| |+-.|||++|
T Consensus 93 ~~-g~i~lVInt~~-~~~~~~~d~~~iRR~Av~~~IP~~T 130 (143)
T 2yvq_A 93 RD-GSIDLVINLPN-NNTKFVHDNYVIRRTAVDSGIPLLT 130 (143)
T ss_dssp HT-TSCCEEEECCC-CCGGGHHHHHHHHHHHHHTTCCEEC
T ss_pred HC-CCceEEEECCC-CCCcCCccHHHHHHHHHHhCCCeEc
Confidence 33 56899998873 22222323 8889999998
No 434
>2xzm_B RPS0E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_B
Probab=22.17 E-value=1.6e+02 Score=28.46 Aligned_cols=88 Identities=19% Similarity=0.216 Sum_probs=50.6
Q ss_pred HHHHhHcC-CcEEEEecCCCCCHHHHHHHHHHHHHcCCCCC-cEEEcCCcCCcHHHHHhcccccEeecCCCCCCchhHHH
Q 003891 547 ARILCAVP-NSRLVVKCKPFCCDSVRHRFLSTLEQLGLESL-RVDLLPLILLNHDHMQAYSLMDISLDTFPYAGTTTTCE 624 (788)
Q Consensus 547 ~~il~~~p-~~~l~l~~~~~~~~~~~~~l~~~~~~~gi~~~-rv~~~~~~~~~~~~~~~~~~~Dv~Ld~~~~~g~~t~~e 624 (788)
++++..+. +..++++|.- .....-+.+.+...|-..- .-+|+|....... ...+..=|+++-+-|-.-+....|
T Consensus 57 ~~~i~~i~~~~~iLfVgtk---~~~~~~V~~~A~~~g~~yv~~~RWlgG~LTN~~-t~~~~~PdlliV~Dp~~e~~ai~E 132 (241)
T 2xzm_B 57 ARVIAAVQHPEDVMVVCSR---IYGQRAAIKFAGYTHCKSTSSSRWTPGTLTNYQ-TLKYEEPRVLIVTDPRSDFQAIKE 132 (241)
T ss_dssp HHHHHHCSSGGGEEEECCS---HHHHHHHHHHHHHHTCBCCCCSSCCTTTTTCTT-CTTCCCCSEEEESCTTTTHHHHHH
T ss_pred HHHHHHHhCCCeEEEEECC---HHHHHHHHHHHHHhCCEEeccccccCCcccCcc-ccccCCCCEEEEECCCcchHHHHH
Confidence 33444442 3445555543 1233334455555565422 1135665442221 244566777766667788899999
Q ss_pred HhhhCCceeecCCC
Q 003891 625 SLYMGVPCVTMAGS 638 (788)
Q Consensus 625 al~~GvPvvt~~g~ 638 (788)
|-.+|+|||++-+.
T Consensus 133 A~~l~IPvIalvDT 146 (241)
T 2xzm_B 133 ASYVNIPVIALCDS 146 (241)
T ss_dssp HTTTTCCEEECCCS
T ss_pred HHHhCCCEEEEecC
Confidence 99999999987653
No 435
>2npm_A 14-3-3 domain containing protein; cell regulator protein 14-3-3, struc genomics, structural genomics consortium, SGC, protein BIND; HET: SEP; 2.52A {Cryptosporidium parvum}
Probab=22.15 E-value=5.5e+02 Score=24.97 Aligned_cols=28 Identities=11% Similarity=0.121 Sum_probs=17.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 003891 61 YYNLGVVYSELMQYDTALGCYEKAALER 88 (788)
Q Consensus 61 ~~~lg~~~~~~g~~~~A~~~~~kal~~~ 88 (788)
+..++.+..+.++|++...+.+++.+.+
T Consensus 31 ~v~~AkLaeqaeRyddmv~~mk~v~~~~ 58 (260)
T 2npm_A 31 NVYMAKLAEQAERYDEMAKYMKDVVEAR 58 (260)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcc
Confidence 3455666666666776666666666654
No 436
>3gyb_A Transcriptional regulators (LACI-family transcriptional regulatory protein); protein structure initiative II(PSI II), nysgxrc; 1.60A {Corynebacterium glutamicum}
Probab=22.15 E-value=1.6e+02 Score=28.60 Aligned_cols=66 Identities=14% Similarity=0.129 Sum_probs=43.3
Q ss_pred CCCeeEeeccCCcccChhHHhhhhhhcccCCCceEEEEEeccccCChhhHHHHHHHhhhCCeEEEccCCCHHHHHHHHHh
Q 003891 352 ERPLVIGYVSPDYFTHSVSYFIEAPLVYHDYQNYKVVVYSAVVKADAKTIRFREKVMKKGGIWRDIYGIDEKKVAAMVRE 431 (788)
Q Consensus 352 ~~~lriGyvS~df~~H~v~~~~~~~l~~~dr~~fev~~Y~~~~~~D~~t~~~r~~~~~~~~~~~~~~~~~~~~~a~~i~~ 431 (788)
++..+||++.+++.+.-...++.++.......++++.++... ..+.. .+..+.+.+
T Consensus 3 ~~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~-~~~~~-----------------------~~~~~~l~~ 58 (280)
T 3gyb_A 3 LRTQLIAVLIDDYSNPWFIDLIQSLSDVLTPKGYRLSVIDSL-TSQAG-----------------------TDPITSALS 58 (280)
T ss_dssp -CCCEEEEEESCTTSGGGHHHHHHHHHHHGGGTCEEEEECSS-SSCSS-----------------------SCHHHHHHT
T ss_pred CccCEEEEEeCCCCChHHHHHHHHHHHHHHHCCCEEEEEeCC-CchHH-----------------------HHHHHHHHh
Confidence 355789999888765555666667766666778888887665 22211 124556677
Q ss_pred CCCcEEEeCCC
Q 003891 432 DKIDILVELTG 442 (788)
Q Consensus 432 d~idilvdl~g 442 (788)
.++|-+| ...
T Consensus 59 ~~vdgiI-~~~ 68 (280)
T 3gyb_A 59 MRPDGII-IAQ 68 (280)
T ss_dssp TCCSEEE-EES
T ss_pred CCCCEEE-ecC
Confidence 8999998 543
No 437
>2i2x_B MTAC, methyltransferase 1; TIM barrel and helix bundle (MTAB), rossman fold and helix B (MTAC); HET: B13; 2.50A {Methanosarcina barkeri}
Probab=22.09 E-value=3.2e+02 Score=26.51 Aligned_cols=106 Identities=13% Similarity=0.108 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHcCCCCCcEEEcCCcCCcHHHHHhc--ccccEeecCCCCCCchh----HHHHhh---hCCceeecCCCcc
Q 003891 570 VRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAY--SLMDISLDTFPYAGTTT----TCESLY---MGVPCVTMAGSVH 640 (788)
Q Consensus 570 ~~~~l~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~--~~~Dv~Ld~~~~~g~~t----~~eal~---~GvPvvt~~g~~~ 640 (788)
-..-+...++..|.+ |+.+|...+.+++.... ..+|++.-++-.+.+.+ +++.|- .++||+. .|..+
T Consensus 139 G~~iva~~L~~~G~~---Vi~LG~~vp~e~l~~~~~~~~~d~V~lS~l~~~~~~~~~~~i~~l~~~~~~~~v~v-GG~~~ 214 (258)
T 2i2x_B 139 GKNIVTALLRANGYN---VVDLGRDVPAEEVLAAVQKEKPIMLTGTALMTTTMYAFKEVNDMLLENGIKIPFAC-GGGAV 214 (258)
T ss_dssp HHHHHHHHHHHTTCE---EEEEEEECCSHHHHHHHHHHCCSEEEEECCCTTTTTHHHHHHHHHHTTTCCCCEEE-ESTTC
T ss_pred HHHHHHHHHHHCCCE---EEECCCCCCHHHHHHHHHHcCCCEEEEEeeccCCHHHHHHHHHHHHhcCCCCcEEE-ECccC
Confidence 344555666777775 66666433356665543 35677655543333332 344442 2366554 34333
Q ss_pred CccchhHHHhhhCCcccccCCHHHHHHHHHHHhcCHHHHHHHHH
Q 003891 641 AHNVGVSLLTKVGLKHLIAKNEDEYVQLALQLASDVTALANLRM 684 (788)
Q Consensus 641 ~~r~~~~~l~~~gl~~~ia~~~~~y~~~a~~l~~d~~~~~~~r~ 684 (788)
. ..+...+| .+..+.|..+-++.+.++.......+.+|+
T Consensus 215 ~----~~~~~~ig-ad~~~~da~~av~~~~~l~~~~~~~~~~~~ 253 (258)
T 2i2x_B 215 N----QDFVSQFA-LGVYGEEAADAPKIADAIIAGTTDVTELRE 253 (258)
T ss_dssp C----HHHHHTST-TEEECSSTTHHHHHHHHHHTTCCCHHHHHH
T ss_pred C----HHHHHHcC-CeEEECCHHHHHHHHHHHHcchhhHHHHHH
Confidence 2 23345667 456678888889999998876433333443
No 438
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=22.01 E-value=1.4e+02 Score=23.48 Aligned_cols=17 Identities=6% Similarity=0.057 Sum_probs=9.1
Q ss_pred HHcCCHHHHHHHHHHHH
Q 003891 246 TVQGKMDAAAEMIEKAI 262 (788)
Q Consensus 246 ~~~g~~~eA~~~l~kal 262 (788)
-..|++++|+.+|..++
T Consensus 24 D~~g~y~eAl~~Y~~ai 40 (85)
T 2v6x_A 24 DTATQYEEAYTAYYNGL 40 (85)
T ss_dssp HHTTCHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHH
Confidence 34455555555555544
No 439
>3dty_A Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetramer, PSI-2, 11131, NYSGXRC, structural genomics, protein structure initiative; 2.04A {Pseudomonas syringae PV}
Probab=22.00 E-value=84 Score=33.01 Aligned_cols=77 Identities=18% Similarity=0.001 Sum_probs=49.2
Q ss_pred HHHhHcCCcEEEE-ecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHHHHhc----ccccEeecCCCCCCc-hh
Q 003891 548 RILCAVPNSRLVV-KCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAY----SLMDISLDTFPYAGT-TT 621 (788)
Q Consensus 548 ~il~~~p~~~l~l-~~~~~~~~~~~~~l~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~----~~~Dv~Ld~~~~~g~-~t 621 (788)
..+...|+..|+- +.+. ..++.++..+++|+...++ ..+.++.+..- ..+|+++-+.|-.-| ..
T Consensus 32 ~~~~~~~~~~lva~v~d~-----~~~~a~~~a~~~g~~~~~~-----~~~~~~ll~~~~~~~~~vD~V~i~tp~~~H~~~ 101 (398)
T 3dty_A 32 CAALRDNTFVLVAGAFDI-----DPIRGSAFGEQLGVDSERC-----YADYLSMFEQEARRADGIQAVSIATPNGTHYSI 101 (398)
T ss_dssp HHHHGGGSEEEEEEECCS-----SHHHHHHHHHHTTCCGGGB-----CSSHHHHHHHHTTCTTCCSEEEEESCGGGHHHH
T ss_pred HHHhhCCCeEEEEEEeCC-----CHHHHHHHHHHhCCCccee-----eCCHHHHHhcccccCCCCCEEEECCCcHHHHHH
Confidence 3355677777764 4433 2345556667889863333 23355666542 248888777766544 47
Q ss_pred HHHHhhhCCceee
Q 003891 622 TCESLYMGVPCVT 634 (788)
Q Consensus 622 ~~eal~~GvPvvt 634 (788)
+..||..|.+|++
T Consensus 102 ~~~al~aGkhVl~ 114 (398)
T 3dty_A 102 TKAALEAGLHVVC 114 (398)
T ss_dssp HHHHHHTTCEEEE
T ss_pred HHHHHHCCCeEEE
Confidence 8999999999997
No 440
>1r1m_A Outer membrane protein class 4; 1.90A {Neisseria meningitidis} SCOP: d.79.7.1
Probab=21.84 E-value=1.6e+02 Score=26.48 Aligned_cols=58 Identities=17% Similarity=0.161 Sum_probs=38.9
Q ss_pred CcCCHH---HHHHHHHHHhHcCCcEEEEecCC--CCCHH--------HHHHHHHHHHHcCCCCCcEEEcCC
Q 003891 536 AKITPK---VLQVWARILCAVPNSRLVVKCKP--FCCDS--------VRHRFLSTLEQLGLESLRVDLLPL 593 (788)
Q Consensus 536 ~K~~~~---~~~~~~~il~~~p~~~l~l~~~~--~~~~~--------~~~~l~~~~~~~gi~~~rv~~~~~ 593 (788)
..++|+ .++.++.+|+..|...+.|.|.. .++.. -...+.+.|.+.||+++||...|.
T Consensus 24 a~L~~~~~~~L~~la~~L~~~~~~~I~I~GhTD~~G~~~~N~~LS~~RA~aV~~~L~~~Gi~~~ri~~~G~ 94 (164)
T 1r1m_A 24 DSLRAEAQDNLKVLAQRLSRTNIQSVRVEGHTDFMGSDKYNQALSERRAYVVANNLVSNGVPVSRISAVGL 94 (164)
T ss_dssp SCCCHHHHHHHHHHHHHHTTSCEEEEEEEEECCSSSCHHHHHHHHHHHHHHHHHHHHHTTCCGGGEEEEEC
T ss_pred ccCCHHHHHHHHHHHHHHHhCCCcEEEEEEEeCCCCChHHHHHHHHHHHHHHHHHHHHcCCCHHHEEEEEE
Confidence 456664 46666777888888888887732 12221 113466777788999999987765
No 441
>2khz_A C-MYC-responsive protein RCL; flexible loop, nucleus, phosphoprotein, nuclear protein; NMR {Rattus norvegicus} PDB: 2klh_A*
Probab=21.70 E-value=1.9e+02 Score=26.05 Aligned_cols=39 Identities=10% Similarity=0.168 Sum_probs=25.7
Q ss_pred HHhcccccEeecCCCCCCchhHHH---HhhhCCceeecCCCc
Q 003891 601 MQAYSLMDISLDTFPYAGTTTTCE---SLYMGVPCVTMAGSV 639 (788)
Q Consensus 601 ~~~~~~~Dv~Ld~~~~~g~~t~~e---al~~GvPvvt~~g~~ 639 (788)
+..+..||+++-=+-....-|..| |.+.|.|||++..+.
T Consensus 72 ~~~i~~aD~vva~~~~~d~Gt~~EiGyA~algKPVi~l~~~~ 113 (165)
T 2khz_A 72 LNWLQQADVVVAEVTQPSLGVGYELGRAVALGKPILCLFRPQ 113 (165)
T ss_dssp HHHHHHCSEEEEECSSCCHHHHHHHHHHHHTCSSEEEEECTT
T ss_pred HHHHHhCCEEEEECCCCCCCHHHHHHHHHHCCCEEEEEEcCC
Confidence 466788999843322333445555 788899999986544
No 442
>4gq4_A Menin; tumor suppressor, nucleus, transcription-transcription inhib complex; HET: 0RT EPE PE4; 1.27A {Homo sapiens} PDB: 4gq3_A* 4gpq_A* 4gq6_A*
Probab=21.62 E-value=5.2e+02 Score=27.12 Aligned_cols=93 Identities=10% Similarity=0.029 Sum_probs=52.4
Q ss_pred HHHHHHHHHcC---ChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----CCCCHHHHHHHH
Q 003891 171 YNLGVAYGEML---KFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSI-----KPNFSQSLNNLG 242 (788)
Q Consensus 171 ~~la~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~-----~p~~~~~~~~la 242 (788)
..+-.+++..| +|..|+-.+-..-++.|... ...++.+|++++.. ......-|..+|
T Consensus 246 q~LLWlLyd~Ghl~~YPmALgnLgDLEei~pt~g---------------rp~~~~Lf~~AI~~ar~~Y~~~hvYPYtYlg 310 (489)
T 4gq4_A 246 QKLLWLLYDLGHLERYPMALGNLADLEELEPTPG---------------RPDPLTLYHKGIASAKTYYRDEHIYPYMYLA 310 (489)
T ss_dssp HHHHHHHHHHTTTTTCHHHHHHHHHHHHHSCCTT---------------SCCHHHHHHHHHHHHHHHSTTCCSHHHHHHH
T ss_pred HHHHHHHHhccchhhcchhhhcccCHhhcCCCCC---------------CCCHHHHHHHHHHHHHHhcccCcccceeecc
Confidence 34444444444 45566666655555554421 11334455555543 233455666777
Q ss_pred HHHHHcCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHH
Q 003891 243 VVYTVQGKMDAAAEMIEKAIAA------NPTYAEAYNNLGVL 278 (788)
Q Consensus 243 ~~~~~~g~~~eA~~~l~kal~~------~p~~~~~~~~la~~ 278 (788)
-.+.+.+++.+|+..+.++-.. ..++.++|..+-.+
T Consensus 311 G~~~R~~~~~eAl~~wa~aa~Vi~~YnY~reDeEiYke~~eI 352 (489)
T 4gq4_A 311 GYHCRNRNVREALQAWADTATVIQDYNYCREDEEIYKEFFEV 352 (489)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHTTSCCCTTCHHHHHHHHHH
T ss_pred hHHHHhhhHHHHHHHhhhhhhhhhhcccccchHHHHHHHHHH
Confidence 7777788888888877777553 34456666555444
No 443
>3u84_A Menin; MLL, JUND, ledgf, TPR, transglutaminase-like, transcription, epigenetics, cancer; 2.50A {Homo sapiens} PDB: 3u85_A 3u86_A 3u88_A*
Probab=21.50 E-value=6.2e+02 Score=26.52 Aligned_cols=80 Identities=14% Similarity=0.106 Sum_probs=51.4
Q ss_pred HHHHHHHHHHcC---ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCHHHHHHH
Q 003891 27 LTDLGTSLKLAG---NTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALE-----RPMYAEAYCNM 98 (788)
Q Consensus 27 l~~lg~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~-----~p~~~~~~~~l 98 (788)
...+-..++..| +|.-|+..+-..-+..|.... ..++.+|.+++.. ...+..-|..+
T Consensus 260 Qq~LLWlLyd~GhL~rYPmALgnLgDLEe~~pt~gr---------------~~~~~L~~~AI~sa~~~Y~n~HvYPYtYl 324 (550)
T 3u84_A 260 QQKLLWLLYDLGHLERYPMALGNLADLEELEPTPGR---------------PDPLTLYHKGIASAKTYYRDEHIYPYMYL 324 (550)
T ss_dssp HHHHHHHHHHTTTTTTCHHHHHHHHHHHHHSCCTTC---------------CCHHHHHHHHHHHHHHHSTTCCSHHHHHH
T ss_pred HHHHHHHHHhccchhhCchhhcchhhHhhcCCCCCC---------------CCHHHHHHHHHHHHHHHhccCCccceeec
Confidence 333333444444 566777777776666665311 1255555555542 33456778889
Q ss_pred HHHHHHCCCHHHHHHHHHHHHhh
Q 003891 99 GVIYKNRGDLESAIACYERCLAV 121 (788)
Q Consensus 99 a~~~~~~g~~~~A~~~~~~al~~ 121 (788)
|..+++.+++.+|+..+-.+-..
T Consensus 325 gGy~yR~~~~reAl~~WA~Aa~V 347 (550)
T 3u84_A 325 AGYHCRNRNVREALQAWADTATV 347 (550)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred chhhhhcchHHHHHHHHHHHHHH
Confidence 99999999999999998877543
No 444
>2qvg_A Two component response regulator; NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.50A {Legionella pneumophila subsp}
Probab=20.99 E-value=2.8e+02 Score=23.04 Aligned_cols=103 Identities=7% Similarity=0.113 Sum_probs=58.9
Q ss_pred EEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHHHHhcc--------cccEe-ecCC-CCCCchhHHHHh
Q 003891 557 RLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYS--------LMDIS-LDTF-PYAGTTTTCESL 626 (788)
Q Consensus 557 ~l~l~~~~~~~~~~~~~l~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~--------~~Dv~-Ld~~-~~~g~~t~~eal 626 (788)
+++++.. ++..+..+...+.+.|.. ..|..... ..+.+..+. ..|++ +|.. |-..|...++.+
T Consensus 9 ~ILivdd---~~~~~~~l~~~L~~~g~~-~~v~~~~~---~~~a~~~l~~~~~~~~~~~dlii~D~~l~~~~g~~~~~~l 81 (143)
T 2qvg_A 9 DILYLED---DEVDIQSVERVFHKISSL-IKIEIAKS---GNQALDMLYGRNKENKIHPKLILLDINIPKMNGIEFLKEL 81 (143)
T ss_dssp SEEEECC---CHHHHHHHHHHHHHHCTT-CCEEEESS---HHHHHHHHHTCTTCCCCCCSEEEEETTCTTSCHHHHHHHH
T ss_pred eEEEEeC---CHHHHHHHHHHHHHhCCC-ceEEEECC---HHHHHHHHHhcccccCCCCCEEEEecCCCCCCHHHHHHHH
Confidence 4555543 346788899999998875 34555443 345555442 36766 5554 444566777776
Q ss_pred h-----hCCceeecCCCccCccchhHHHhhhCCcccccC--CHHHHHHH
Q 003891 627 Y-----MGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIAK--NEDEYVQL 668 (788)
Q Consensus 627 ~-----~GvPvvt~~g~~~~~r~~~~~l~~~gl~~~ia~--~~~~y~~~ 668 (788)
. .++|||.+.+..-.. ...-....|..+++.+ +.++..+.
T Consensus 82 ~~~~~~~~~~ii~ls~~~~~~--~~~~~~~~g~~~~l~kP~~~~~L~~~ 128 (143)
T 2qvg_A 82 RDDSSFTDIEVFVLTAAYTSK--DKLAFESLNIRGHLIKPLDYGEAIKL 128 (143)
T ss_dssp TTSGGGTTCEEEEEESCCCHH--HHHHHTTTTCCEEEESSCCHHHHHHH
T ss_pred HcCccccCCcEEEEeCCCCHH--HHHHHHhcCCCeEEECCCCHHHHHHH
Confidence 5 578999876653211 1122234566666644 44444433
No 445
>1ydw_A AX110P-like protein; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, AT4G09670; 2.49A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.5 PDB: 2q4e_A
Probab=20.92 E-value=2.2e+02 Score=29.22 Aligned_cols=78 Identities=8% Similarity=-0.005 Sum_probs=48.3
Q ss_pred HHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHHHHhcccccEeecCCCCCCch-hHHHH
Q 003891 547 ARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPYAGTT-TTCES 625 (788)
Q Consensus 547 ~~il~~~p~~~l~l~~~~~~~~~~~~~l~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~~Dv~Ld~~~~~g~~-t~~ea 625 (788)
.+.+...|+..++.+... ..++.++..++.|+.+. +... .+.++.+.. ..+|+++.+.|-..+. .+.+|
T Consensus 22 ~~~l~~~~~~~lv~v~d~-----~~~~~~~~a~~~~~~~~-~~~~---~~~~~ll~~-~~~D~V~i~tp~~~h~~~~~~a 91 (362)
T 1ydw_A 22 SRAIHLAPNATISGVASR-----SLEKAKAFATANNYPES-TKIH---GSYESLLED-PEIDALYVPLPTSLHVEWAIKA 91 (362)
T ss_dssp HHHHHHCTTEEEEEEECS-----SHHHHHHHHHHTTCCTT-CEEE---SSHHHHHHC-TTCCEEEECCCGGGHHHHHHHH
T ss_pred HHHHhhCCCcEEEEEEcC-----CHHHHHHHHHHhCCCCC-Ceee---CCHHHHhcC-CCCCEEEEcCChHHHHHHHHHH
Confidence 344566788888766543 12344555667787421 1111 223444432 2489998888775554 67889
Q ss_pred hhhCCceee
Q 003891 626 LYMGVPCVT 634 (788)
Q Consensus 626 l~~GvPvvt 634 (788)
|..|++|++
T Consensus 92 l~aGk~V~~ 100 (362)
T 1ydw_A 92 AEKGKHILL 100 (362)
T ss_dssp HTTTCEEEE
T ss_pred HHCCCeEEE
Confidence 999999997
No 446
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=20.79 E-value=1.6e+02 Score=23.08 Aligned_cols=29 Identities=24% Similarity=0.397 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 003891 24 AIVLTDLGTSLKLAGNTQDGIQKYYEALK 52 (788)
Q Consensus 24 a~~l~~lg~~~~~~g~~~~A~~~~~~al~ 52 (788)
|..+...|...-..|++++|+.+|.++++
T Consensus 13 A~~l~~~Av~~D~~g~y~eAl~~Y~~aie 41 (85)
T 2v6x_A 13 GIELVQKAIDLDTATQYEEAYTAYYNGLD 41 (85)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 33344444444555555555555555543
No 447
>3hdv_A Response regulator; PSI-II, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.09A {Pseudomonas putida} SCOP: c.23.1.0
Probab=20.73 E-value=3.5e+02 Score=22.18 Aligned_cols=107 Identities=8% Similarity=0.084 Sum_probs=58.7
Q ss_pred cEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHHHHhc---ccccEe-ecCC-CCCCchhHHHHhh---
Q 003891 556 SRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAY---SLMDIS-LDTF-PYAGTTTTCESLY--- 627 (788)
Q Consensus 556 ~~l~l~~~~~~~~~~~~~l~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~---~~~Dv~-Ld~~-~~~g~~t~~eal~--- 627 (788)
.+++++.. ++..+..+...+++.|.. |..... ..+.+..+ ...|++ +|.. |-..|...++.+.
T Consensus 8 ~~ilivdd---~~~~~~~l~~~L~~~g~~---v~~~~~---~~~a~~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~ 78 (136)
T 3hdv_A 8 PLVLVVDD---NAVNREALILYLKSRGID---AVGADG---AEEARLYLHYQKRIGLMITDLRMQPESGLDLIRTIRASE 78 (136)
T ss_dssp CEEEEECS---CHHHHHHHHHHHHHTTCC---EEEESS---HHHHHHHHHHCTTEEEEEECSCCSSSCHHHHHHHHHTST
T ss_pred CeEEEECC---CHHHHHHHHHHHHHcCce---EEEeCC---HHHHHHHHHhCCCCcEEEEeccCCCCCHHHHHHHHHhcC
Confidence 45566543 346788899999998875 433322 33333332 225665 5654 4455667777664
Q ss_pred -hCCceeecCCCccCccchhHHHhhhCCcccccC--CHHHHHHHHHHHh
Q 003891 628 -MGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIAK--NEDEYVQLALQLA 673 (788)
Q Consensus 628 -~GvPvvt~~g~~~~~r~~~~~l~~~gl~~~ia~--~~~~y~~~a~~l~ 673 (788)
..+|||.+.+..-... ..-....|..+++.+ +.+++.+..-+..
T Consensus 79 ~~~~~ii~~s~~~~~~~--~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~ 125 (136)
T 3hdv_A 79 RAALSIIVVSGDTDVEE--AVDVMHLGVVDFLLKPVDLGKLLELVNKEL 125 (136)
T ss_dssp TTTCEEEEEESSCCHHH--HHHHHHTTCSEEEESSCCHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCChHH--HHHHHhCCcceEEeCCCCHHHHHHHHHHHh
Confidence 4589998776532211 112234566666644 4555544444433
No 448
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=20.66 E-value=1.5e+02 Score=29.02 Aligned_cols=42 Identities=12% Similarity=0.141 Sum_probs=27.9
Q ss_pred CCCeeEeeccCCcccChhHHhhhhhhcccCCCceEEEEEecc
Q 003891 352 ERPLVIGYVSPDYFTHSVSYFIEAPLVYHDYQNYKVVVYSAV 393 (788)
Q Consensus 352 ~~~lriGyvS~df~~H~v~~~~~~~l~~~dr~~fev~~Y~~~ 393 (788)
++..+||++.++..+.-...++.++.......++++.++...
T Consensus 6 ~~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~ 47 (293)
T 3l6u_A 6 PKRNIVGFTIVNDKHEFAQRLINAFKAEAKANKYEALVATSQ 47 (293)
T ss_dssp ---CEEEEEESCSCSHHHHHHHHHHHHHHHHTTCEEEEEECS
T ss_pred CCCcEEEEEEecCCcHHHHHHHHHHHHHHHHcCCEEEEECCC
Confidence 456789999888765445566666666666678888887653
No 449
>1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A
Probab=20.56 E-value=46 Score=33.96 Aligned_cols=29 Identities=17% Similarity=0.112 Sum_probs=23.3
Q ss_pred ccccEeecCCCCCCchhHHHHhhhCCceee
Q 003891 605 SLMDISLDTFPYAGTTTTCESLYMGVPCVT 634 (788)
Q Consensus 605 ~~~Dv~Ld~~~~~g~~t~~eal~~GvPvvt 634 (788)
..-|++|||| .|.|||...|+-+|.-.|.
T Consensus 241 ~~~~~vlDpF-~GsGtt~~aa~~~~r~~ig 269 (319)
T 1eg2_A 241 HPGSTVLDFF-AGSGVTARVAIQEGRNSIC 269 (319)
T ss_dssp CTTCEEEETT-CTTCHHHHHHHHHTCEEEE
T ss_pred CCCCEEEecC-CCCCHHHHHHHHcCCcEEE
Confidence 4569999995 3668999999999977664
No 450
>3e9m_A Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, PSI-II, dimeric dihydodiol dehydrogenase, structural genomics; 2.70A {Enterococcus faecalis}
Probab=20.51 E-value=1.4e+02 Score=30.15 Aligned_cols=76 Identities=11% Similarity=-0.001 Sum_probs=48.0
Q ss_pred HHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHHHHhcccccEeecCCCCCCch-hHHH
Q 003891 546 WARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPYAGTT-TTCE 624 (788)
Q Consensus 546 ~~~il~~~p~~~l~l~~~~~~~~~~~~~l~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~~Dv~Ld~~~~~g~~-t~~e 624 (788)
.++.+.+.|+..++-+.... .++.++..++.|+. ++ ..+.++.+.. ..+|+++.+.|-..+. .+.+
T Consensus 20 ~~~~l~~~~~~~l~av~d~~-----~~~~~~~~~~~~~~--~~-----~~~~~~ll~~-~~~D~V~i~tp~~~h~~~~~~ 86 (330)
T 3e9m_A 20 FVAGLRESAQAEVRGIASRR-----LENAQKMAKELAIP--VA-----YGSYEELCKD-ETIDIIYIPTYNQGHYSAAKL 86 (330)
T ss_dssp HHHHHHHSSSEEEEEEBCSS-----SHHHHHHHHHTTCC--CC-----BSSHHHHHHC-TTCSEEEECCCGGGHHHHHHH
T ss_pred HHHHHHhCCCcEEEEEEeCC-----HHHHHHHHHHcCCC--ce-----eCCHHHHhcC-CCCCEEEEcCCCHHHHHHHHH
Confidence 45566777998888655431 23444555667774 11 1223444432 3689888777765544 6789
Q ss_pred HhhhCCceee
Q 003891 625 SLYMGVPCVT 634 (788)
Q Consensus 625 al~~GvPvvt 634 (788)
|+..|.+|++
T Consensus 87 al~~gk~vl~ 96 (330)
T 3e9m_A 87 ALSQGKPVLL 96 (330)
T ss_dssp HHHTTCCEEE
T ss_pred HHHCCCeEEE
Confidence 9999999997
No 451
>1h6d_A Precursor form of glucose-fructose oxidoreductase; protein translocation, periplasmic oxidoreductase, signal peptide, ligand binding,; HET: NDP; 2.05A {Zymomonas mobilis} SCOP: c.2.1.3 d.81.1.5 PDB: 1h6b_A* 1h6a_A* 1h6c_A* 1ryd_A* 1rye_A* 1ofg_A* 1evj_A*
Probab=20.39 E-value=91 Score=33.27 Aligned_cols=80 Identities=8% Similarity=0.008 Sum_probs=49.1
Q ss_pred HHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHHHHhcccccEeecCCCCCCch-hHHH
Q 003891 546 WARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPYAGTT-TTCE 624 (788)
Q Consensus 546 ~~~il~~~p~~~l~l~~~~~~~~~~~~~l~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~~Dv~Ld~~~~~g~~-t~~e 624 (788)
..+.+.+.|+..++-+... ..++.++..++.|+....+... .+.++.+.. ..+|+++.+.|-.-+. .+.+
T Consensus 99 ~~~~l~~~~~~~lvav~d~-----~~~~~~~~a~~~g~~~~~~~~~---~~~~~ll~~-~~vD~V~iatp~~~h~~~~~~ 169 (433)
T 1h6d_A 99 ILPGFAGCQHSRIEALVSG-----NAEKAKIVAAEYGVDPRKIYDY---SNFDKIAKD-PKIDAVYIILPNSLHAEFAIR 169 (433)
T ss_dssp HHHHTTTCSSEEEEEEECS-----CHHHHHHHHHHTTCCGGGEECS---SSGGGGGGC-TTCCEEEECSCGGGHHHHHHH
T ss_pred HHHHHhhCCCcEEEEEEcC-----CHHHHHHHHHHhCCCccccccc---CCHHHHhcC-CCCCEEEEcCCchhHHHHHHH
Confidence 3455666788888766543 1234445556778753223221 123333321 2589998888775554 6788
Q ss_pred HhhhCCceee
Q 003891 625 SLYMGVPCVT 634 (788)
Q Consensus 625 al~~GvPvvt 634 (788)
||..|++|++
T Consensus 170 al~aGk~Vl~ 179 (433)
T 1h6d_A 170 AFKAGKHVMC 179 (433)
T ss_dssp HHHTTCEEEE
T ss_pred HHHCCCcEEE
Confidence 9999999997
No 452
>3re1_A Uroporphyrinogen-III synthetase; HEMD-like family, uroporphyrinogen III synthase, HMB, lyase; 2.50A {Pseudomonas syringae PV}
Probab=20.21 E-value=83 Score=30.97 Aligned_cols=112 Identities=15% Similarity=0.107 Sum_probs=66.8
Q ss_pred HcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCC---cHHHHHhc--ccccEeecCCCCCCch--hHHH
Q 003891 552 AVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILL---NHDHMQAY--SLMDISLDTFPYAGTT--TTCE 624 (788)
Q Consensus 552 ~~p~~~l~l~~~~~~~~~~~~~l~~~~~~~gi~~~rv~~~~~~~~---~~~~~~~~--~~~Dv~Ld~~~~~g~~--t~~e 624 (788)
..++.++++..+. ..++.|.+.+++.|+..+.+..-...+. ..+....+ ...|+++-|+|.+--. ..+.
T Consensus 138 ~~~g~~vLi~rg~----~~r~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~l~~~~~d~v~ftS~s~v~~~~~~~~ 213 (269)
T 3re1_A 138 AVPGSRVLIMRGN----EGRELLAEQLRERGVGVDYLPLYRRYLPQHAPGTLLQRVEVERLNGLVVSSGQGFEHLLQLAG 213 (269)
T ss_dssp CSSSCEEEEEECS----SCCCHHHHHHHHTTCEEEEEECEEEECCCCCTTTTHHHHHHTTCCEEECSSHHHHTTTHHHHG
T ss_pred cCCCCEEEEEccC----ccHHHHHHHHHHCCCEEEEEeEEEEECCCCCHHHHHHHHHcCCCCEEEEcCHHHHHHHHHHhh
Confidence 3556666555432 2345677788889998766644333221 12222222 4578998777652211 1121
Q ss_pred H---hhhCCceeecCCCccCccchhHHHhhhCCcccc-c--CCHHHHHHHHHHHh
Q 003891 625 S---LYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLI-A--KNEDEYVQLALQLA 673 (788)
Q Consensus 625 a---l~~GvPvvt~~g~~~~~r~~~~~l~~~gl~~~i-a--~~~~~y~~~a~~l~ 673 (788)
. ...++++++ .|..++.-++..|+...+ + .+.+..++...+..
T Consensus 214 ~~~~~l~~~~~~a------IG~~Ta~~l~~~G~~~~~va~~~t~~~l~~al~~~~ 262 (269)
T 3re1_A 214 DSWPDLAGLPLFV------PSPRVASLAQAAGARNVIDCRGASAAALLAALRDQP 262 (269)
T ss_dssp GGHHHHTTSCEEE------SSHHHHHHHHHHTCSSEEECSSSSHHHHHHHHHHSC
T ss_pred HHHHHHhCCeEEE------ECHHHHHHHHHCCCCceEECCCCCHHHHHHHHHHHh
Confidence 1 245889988 678888889999997644 3 56777777766544
Done!