Query 003892
Match_columns 788
No_of_seqs 49 out of 51
Neff 2.6
Searched_HMMs 29240
Date Mon Mar 25 07:28:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003892.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003892hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2f6h_X Myosin-2, type V myosin 99.1 1.9E-10 6.5E-15 121.5 12.7 289 295-673 44-347 (419)
2 3mmi_A Myosin-4; globular tail 98.8 7.6E-08 2.6E-12 102.3 14.5 307 261-674 17-332 (386)
3 2lme_A Adhesin YADA; trimeric 46.2 21 0.00073 31.6 4.5 32 256-287 14-45 (105)
4 3ra3_B P2F; coiled coil domain 27.3 59 0.002 23.6 3.3 24 255-281 4-27 (28)
5 1a93_B MAX protein, coiled coi 24.1 76 0.0026 24.2 3.6 23 253-275 9-31 (34)
6 1zme_C Proline utilization tra 23.4 67 0.0023 25.1 3.4 19 259-277 45-63 (70)
7 2yy0_A C-MYC-binding protein; 22.8 98 0.0033 24.9 4.3 28 252-279 20-47 (53)
8 1dip_A Delta-sleep-inducing pe 21.5 64 0.0022 28.3 3.1 31 251-281 15-48 (78)
9 2er8_A Regulatory protein Leu3 19.4 47 0.0016 26.3 1.8 21 257-277 48-68 (72)
10 4f2d_A L-arabinose isomerase; 19.1 57 0.002 35.8 2.9 25 271-295 250-274 (500)
No 1
>2f6h_X Myosin-2, type V myosin; mysoin V, cargo binding, cargo transport, vacuole binding, secreatory vescIle binding, structural protein; 2.25A {Saccharomyces cerevisiae}
Probab=99.14 E-value=1.9e-10 Score=121.55 Aligned_cols=289 Identities=16% Similarity=0.243 Sum_probs=192.5
Q ss_pred ccccCchhhhhhHHHHHHhccccchhhhhhhhhhcceeEEEeecc-cCC-CcchhhhhhhHHHHHHHH--HHHhcCCCCC
Q 003892 295 AHKVHSPARRLSRIYIHACKHWTQNKRATIAKNSVSGLVLVAKSC-GND-VSRLTFWLSNTIVLREII--CQAFGNSHNS 370 (788)
Q Consensus 295 shKvHtPARRLSRlYiHAcK~~s~~krAsaArn~VSGLVLVaKaC-GND-VpRLTFWLSNtVVLReII--sqa~~~s~~~ 370 (788)
.+-+-.||.=|-..-.|+.|.....++-+.--.++.++=-|.+.. |+| +..|.|||||+.-|--.+ .|.....
T Consensus 44 ~~~~l~PA~il~~cl~~~~~~~~~~~~~~ll~~ii~~I~~~v~~~~~~d~i~~lafWLSN~~~LL~~L~~k~~~~~~--- 120 (419)
T 2f6h_X 44 KRDVVYPARILIIVLSEMWRFGLTKQSESFLAQVLTTIQKVVTQLKGNDLIPSGVFWLANVRELYSFVVFALNSILT--- 120 (419)
T ss_dssp HHHHSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTCCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
T ss_pred CCCcchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhcCCCcchhhhhHHHHHHHHHHHHHHHhhhhhhc---
Confidence 455668998877766677777544444444444555544444555 467 588999999999999988 4443100
Q ss_pred CCcccccccCCCCCCCcCCcccccccCCCCCcccCCccCCCCccch----hhHHHHHHhhhhhhhhhhhHHHHHHh---h
Q 003892 371 TPVTRISESNGFSKKSEGKSQSLKWKGGSGNKQLNGHLQFDEDWQE----MGTFIAALQKVESWIFSRIVESVWWQ---A 443 (788)
Q Consensus 371 ~~~~~~~~~ng~~k~~~~~~~~~~wk~~~~~k~~~~~~~~~~dW~e----~~Tf~~ALeKvEsWIFSRIVESVWWQ---t 443 (788)
++ + . ..+ ....+|.+ ...|...|+-+.-.||+.++..+-=. .
T Consensus 121 ---------~~-~--~---~~~----------------~~~~~~~~y~~l~~~~~~~L~~l~~~iy~~li~~l~k~L~p~ 169 (419)
T 2f6h_X 121 ---------EE-T--F---KNG----------------MTDEEYKEYVSLVTELKDDFEALSYNIYNIWLKKLQKQLQKK 169 (419)
T ss_dssp ---------CC-C-------------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---------cC-c--c---ccc----------------cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00 0 0 000 01234533 44566778888889999877555322 3
Q ss_pred hcCCccCCCC----CCcccccccCCCCCCcccccchhHHHHHHHHHHHHHHccccCCCCCCCCchHHHHHHHHHHHHHHh
Q 003892 444 LTPHMQSPVG----STTKPIGKLLGPALGDQQQGSFSINLWKNAFQDALQKLCPVRAGGHECGCLPVLGRMVMEQCVARL 519 (788)
Q Consensus 444 lTPhMQs~~~----~s~k~~G~~~~~~lGDq~QG~fSI~LWK~AF~dA~eRLCP~RagghECGCLpvLaRlVMEqcVaRL 519 (788)
+.|-|+-+.. ...+..| +.+...+. +...+++-=-+-|......|+ .|+==|.|.++++.|+..=+
T Consensus 170 l~paIl~~~~~~~~~~~~~~~-~~~k~~~~--~~~~~~~~Il~~L~~~~~~L~-------~~~V~~~l~~Q~fsQlf~~I 239 (419)
T 2f6h_X 170 AINAVVISESLPGFSAGETSG-FLNKIFAN--TEEYTMDDILTFFNSIYWCMK-------SFHIENEVFHAVVTTLLNYV 239 (419)
T ss_dssp HHHHHTTSCSSTTTTC------------------CCCHHHHHHHHHHHHHHHH-------HTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHhCcccccccccccccc-cccccccC--CCccCHHHHHHHHHHHHHHHH-------HcCCCHHHHHHHHHHHHHHH
Confidence 4455553321 1111111 00111111 112343333344444444442 24445889999999999999
Q ss_pred HHHHHHHHhhccCCCCCCCCCCCCccCCcccccCCCCccccccchhhhhhhhhHHHHHhhhCCCCCCCCCCCCCCCCCCC
Q 003892 520 DVAMFNAILRESANEIPTDPVSDPILDSKVLPIPAGDLSFGSGAQLKNSVGNWSRWLTDMFGMDTDDSPKEDQDFTEDDD 599 (788)
Q Consensus 520 DVAMFNAILRESa~eiPTDPiSDPI~D~kVLPIPaG~lSFGaGAQLKnaIgnWSRwLtDlFGid~dd~~~~~~~~~~~~~ 599 (788)
++-+||.||-. .+-.+|-.|.|+|.-|+..-.|+... |+..
T Consensus 240 n~~lFN~LL~r-----------------------~~~cs~s~G~qIr~nls~Le~W~~~~-~l~~--------------- 280 (419)
T 2f6h_X 240 DAICFNELIMK-----------------------RNFLSWKRGLQLNYNVTRLEEWCKTH-GLTD--------------- 280 (419)
T ss_dssp HHHHHHHHHTC-----------------------SSCCCHHHHHHHHHHHHHHHHHHHHT-TCTT---------------
T ss_pred HHHHHHHHhcc-----------------------CcccchhhHHHHHhhHHHHHHHHHHc-CChh---------------
Confidence 99999999852 24589999999999999999999987 5410
Q ss_pred CCCCCCCCcchhhhhhhhcccccccccccCchhhhhccCCcchHHHHHHhccCCCCCCCCCCCChHHHHHhhhh
Q 003892 600 GQDGVGEPKSFILLNSFSDLLMLPKDMLMDRSIRQEVCPLISLSLVKRILCNFTPDEFCPDAVPGAVLEALNAE 673 (788)
Q Consensus 600 ~~~~~~~~k~F~LLnalSDLLMLPKDML~D~SiRkEVCPs~~lpLIkRIL~NF~PDEFcPDPVP~~VlEaLnsE 673 (788)
+ ...|.-|+.++.||.++|.-+.|-....++||.++..=|.|||..|.||+| .+|||+.|+..+.+.
T Consensus 281 ---a---~~~L~~l~Qa~~lLq~~k~~~~d~~~i~~~C~~Ln~~Ql~~il~~Y~~d~~-e~~v~~~~i~~v~~~ 347 (419)
T 2f6h_X 281 ---G---TECLQHLIQTAKLLQVRKYTIEDIDILRGICYSLTPAQLQKLISQYQVADY-ESPIPQEILRYVADI 347 (419)
T ss_dssp ---H---HHHTHHHHHHHHHTTSCCSSHHHHHHHHHHTTTSCHHHHHHHHHHCCCCTT-SCCCCHHHHHHHHHH
T ss_pred ---H---HHHHHHHHHHHHHHhhCCCchhhHHHHHHHhhcCCHHHHHHHHHhCCCccC-CCCCCHHHHHHHHHH
Confidence 1 235888999999999999988888889999999999999999999999999 999999999998754
No 2
>3mmi_A Myosin-4; globular tail, dilute domain, motor protein; 2.30A {Saccharomyces cerevisiae}
Probab=98.75 E-value=7.6e-08 Score=102.29 Aligned_cols=307 Identities=14% Similarity=0.171 Sum_probs=192.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhcccccCCCCccccCchhhhhhHHHHHHhccccchhhhhhhhhhcceeEEEeec-c
Q 003892 261 EEMELRIEKLEEELRDVAALEISLYSVVPEHGSSAHKVHSPARRLSRIYIHACKHWTQNKRATIAKNSVSGLVLVAKS-C 339 (788)
Q Consensus 261 eele~rie~LE~ELREaAAlEvsLYSVVaEHGSSshKvHtPARRLSRlYiHAcK~~s~~krAsaArn~VSGLVLVaKa-C 339 (788)
+||...++.+..+-.|+. |-=|.. ||.---+..=|-.||+=|.-.-=|+-|+.-..+--+.--++++++==+.+. =
T Consensus 17 ~el~~ll~d~~~~~~ei~--~gl~~~-ip~~~~~~~evl~PA~ii~~~~~~m~~~gl~~~s~~fl~~v~~~I~~~v~~~~ 93 (386)
T 3mmi_A 17 PDLLELLMDLNCYTLEVT--EGYLKK-VNVTEVNGDNVLGPIHVITTVVSSLVRNGLLIQSSKFISKVLLTVESIVMSLP 93 (386)
T ss_dssp -CHHHHHHCHHHHHHHHH--HHTSTT-CCCSCCCC---CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHhhHHHHH--HHHhhc-CCCCCCCccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhcC
Confidence 334444444444444432 222333 555445666788999999988888887764443222222222222222244 3
Q ss_pred cCC-CcchhhhhhhHHHHHHHHHHHhcCCCCCCCcccccccCCCCCCCcCCcccccccCCCCCcccCCccCCCCccch-h
Q 003892 340 GND-VSRLTFWLSNTIVLREIICQAFGNSHNSTPVTRISESNGFSKKSEGKSQSLKWKGGSGNKQLNGHLQFDEDWQE-M 417 (788)
Q Consensus 340 GND-VpRLTFWLSNtVVLReIIsqa~~~s~~~~~~~~~~~~ng~~k~~~~~~~~~~wk~~~~~k~~~~~~~~~~dW~e-~ 417 (788)
|.| ++...|||||+--|...|.-+-. .+ .. + .+++|.. .
T Consensus 94 ~~d~i~~g~FWLsN~~~l~sFv~~~q~-------~~---~~-------------------------~----~~d~y~~ll 134 (386)
T 3mmi_A 94 KDETMLGGIFWLSNLSRLPAFAANQKT-------LY---EA-------------------------N----GGDEKDKLT 134 (386)
T ss_dssp TTTHHHHHHHHHHHHTTHHHHHHHHHT-------TC----------------------------------------CHHH
T ss_pred CccccccchHHHHhHHHHHHHHHHHHH-------HH---Hc-------------------------c----ChhHHHHHH
Confidence 788 89999999999877775544331 00 00 0 0233332 2
Q ss_pred hHHHHHHhhhhh----hhhhhhHHHHH--HhhhcCCccCCCCCCcccccccCCCCCCcccccchhHHHHHHHHHHHHHHc
Q 003892 418 GTFIAALQKVES----WIFSRIVESVW--WQALTPHMQSPVGSTTKPIGKLLGPALGDQQQGSFSINLWKNAFQDALQKL 491 (788)
Q Consensus 418 ~Tf~~ALeKvEs----WIFSRIVESVW--WQtlTPhMQs~~~~s~k~~G~~~~~~lGDq~QG~fSI~LWK~AF~dA~eRL 491 (788)
..+-.-|+.++- .||.-++..+= =|++.|-|- +...+++. + ....++++-=-+-|...+..|
T Consensus 135 ~e~r~~l~~L~~~~~e~IY~~~i~~lkk~L~~ilP~~~------~~~~~k~~----~--~~~~~s~~~Il~~L~~~~~~L 202 (386)
T 3mmi_A 135 LIYLNDLENETLKVFDKIYSTWLVKFMKHASAHIEIFD------MVLNEKLF----K--NSGDEKFAKLFTFLNEFDAVL 202 (386)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHH------HHTCGGGS----S--SCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhccccc------cccccccc----C--CCCccCHHHHHHHHHHHHHHH
Confidence 234446777777 78875444331 113334441 11122322 2 123455544444555555555
Q ss_pred cccCCCCCCCCchHHHHHHHHHHHHHHhHHHHHHHHhhccCCCCCCCCCCCCccCCcccccCCCCccccccchhhhhhhh
Q 003892 492 CPVRAGGHECGCLPVLGRMVMEQCVARLDVAMFNAILRESANEIPTDPVSDPILDSKVLPIPAGDLSFGSGAQLKNSVGN 571 (788)
Q Consensus 492 CP~RagghECGCLpvLaRlVMEqcVaRLDVAMFNAILRESa~eiPTDPiSDPI~D~kVLPIPaG~lSFGaGAQLKnaIgn 571 (788)
+ .|+==|.|.++++.|+.-=+++.+||.||-. .+-.+|..|+|+|.-|..
T Consensus 203 ~-------~~~V~p~li~QlfsQLF~fIna~lFN~LLlR-----------------------r~~cs~s~G~qIr~NLs~ 252 (386)
T 3mmi_A 203 C-------KFQVVDSMHTKIFNDTLKYLNVMLFNDLITK-----------------------CPALNWKYGYEVDRNIER 252 (386)
T ss_dssp H-------HTTCCHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------CCCBCHHHHHHHHHHHHH
T ss_pred H-------HcCCCHHHHHHHHHHHHHHHhHHHHHHHHcc-----------------------CcccCcchHHHHHhhHHH
Confidence 3 2444589999999999999999999999862 456899999999999999
Q ss_pred hHHHHHhhhCCCCCCCCCCCCCCCCCCCCCCCCCCCcchhhhhhhhcccccccccccCchhhhhccCCcchHHHHHHhcc
Q 003892 572 WSRWLTDMFGMDTDDSPKEDQDFTEDDDGQDGVGEPKSFILLNSFSDLLMLPKDMLMDRSIRQEVCPLISLSLVKRILCN 651 (788)
Q Consensus 572 WSRwLtDlFGid~dd~~~~~~~~~~~~~~~~~~~~~k~F~LLnalSDLLMLPKDML~D~SiRkEVCPs~~lpLIkRIL~N 651 (788)
.-.|+.. |+.. + ...|.-|+.++.||-+||.-+.|-.+-.++||.++..=|.+||..
T Consensus 253 LEeW~~~--~l~~------------------a---~~~L~~L~QA~~LLQ~~K~t~~Di~~i~~~C~~Lsp~QL~kIL~~ 309 (386)
T 3mmi_A 253 LVSWFEP--RIED------------------V---RPNLIQIIQAVKILQLKISNLNEFKLLFDFWYALNPAQIQAILLK 309 (386)
T ss_dssp HHHHHTT--TSSC------------------C---GGGGHHHHHHHHHHHCCCCCHHHHHHHHTTCCSSCHHHHHHHHHT
T ss_pred HHHHHHh--ccHH------------------H---HHHHHHHHHHHHHHccCCCCHHHHHHHHHhcccCCHHHHHHHHHh
Confidence 9999987 5411 1 237889999999999999888888778899999999999999999
Q ss_pred CCCCCCCCCCCChHHHHHhhhhh
Q 003892 652 FTPDEFCPDAVPGAVLEALNAES 674 (788)
Q Consensus 652 F~PDEFcPDPVP~~VlEaLnsE~ 674 (788)
|.||+++.+|||+.++.++.+-.
T Consensus 310 Y~p~~~~E~~V~~e~i~~v~~~l 332 (386)
T 3mmi_A 310 YKPANKGEAGVPNEILNYLANVI 332 (386)
T ss_dssp BCCC-----CCCHHHHHHHHHHH
T ss_pred CcCCCCCCCCCCHHHHHHHHHHH
Confidence 99999999999999999987654
No 3
>2lme_A Adhesin YADA; trimeric autotransporter, membrane protein, cell adhesion; NMR {Yersinia enterocolitica subsp}
Probab=46.22 E-value=21 Score=31.60 Aligned_cols=32 Identities=22% Similarity=0.320 Sum_probs=28.6
Q ss_pred HhHhHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 003892 256 LNQKIEEMELRIEKLEEELRDVAALEISLYSV 287 (788)
Q Consensus 256 ~~~kieele~rie~LE~ELREaAAlEvsLYSV 287 (788)
..+++.+|..||++++.|++-.+|.=++|=.+
T Consensus 14 ~~~~~~~l~~~i~~~~~~~~~g~A~a~A~a~l 45 (105)
T 2lme_A 14 GAHKFRQLDNRLDKLDTRVDKGLASSAALNSL 45 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 47899999999999999999999998888554
No 4
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=27.27 E-value=59 Score=23.56 Aligned_cols=24 Identities=46% Similarity=0.542 Sum_probs=15.4
Q ss_pred hHhHhHHHHHHHHHHHHHHHHHHHHHH
Q 003892 255 NLNQKIEEMELRIEKLEEELRDVAALE 281 (788)
Q Consensus 255 ~~~~kieele~rie~LE~ELREaAAlE 281 (788)
.|.||+..|+++|..||-| .||||
T Consensus 4 rlkqknarlkqeiaaleye---iaale 27 (28)
T 3ra3_B 4 RLKQKNARLKQEIAALEYE---IAALE 27 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHH---HHHHC
T ss_pred HHHHhhhHHHHHHHHHHHH---HHHhc
Confidence 3566777777777777654 45665
No 5
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=24.12 E-value=76 Score=24.23 Aligned_cols=23 Identities=22% Similarity=0.413 Sum_probs=20.5
Q ss_pred hhhHhHhHHHHHHHHHHHHHHHH
Q 003892 253 EANLNQKIEEMELRIEKLEEELR 275 (788)
Q Consensus 253 ~~~~~~kieele~rie~LE~ELR 275 (788)
+.+..+.|++|+.+...||+++|
T Consensus 9 n~a~qqDIddlkrQN~~Le~Qir 31 (34)
T 1a93_B 9 NDTHQQDIDDLKRQNALLEQQVR 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHhhHhhHHHHHHHHHHHHHHHH
Confidence 55678899999999999999987
No 6
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=23.39 E-value=67 Score=25.13 Aligned_cols=19 Identities=11% Similarity=0.251 Sum_probs=14.4
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q 003892 259 KIEEMELRIEKLEEELRDV 277 (788)
Q Consensus 259 kieele~rie~LE~ELREa 277 (788)
.+++|+.+|..||++|...
T Consensus 45 ~~~~L~~ri~~Le~~l~~l 63 (70)
T 1zme_C 45 YLQQLQKDLNDKTEENNRL 63 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4777888888888877654
No 7
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=22.79 E-value=98 Score=24.92 Aligned_cols=28 Identities=25% Similarity=0.326 Sum_probs=21.9
Q ss_pred hhhhHhHhHHHHHHHHHHHHHHHHHHHH
Q 003892 252 DEANLNQKIEEMELRIEKLEEELRDVAA 279 (788)
Q Consensus 252 ~~~~~~~kieele~rie~LE~ELREaAA 279 (788)
|-..|.+++.+|+.|++.|.+++.|.-+
T Consensus 20 d~eaLk~E~~eLk~k~~~L~~~~~el~~ 47 (53)
T 2yy0_A 20 EIELLRLELAEMKEKYEAIVEENKKLKA 47 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4557788888899999988888877543
No 8
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=21.55 E-value=64 Score=28.35 Aligned_cols=31 Identities=29% Similarity=0.387 Sum_probs=25.6
Q ss_pred chhhhHhHhHHHHHHHHHHHHHH---HHHHHHHH
Q 003892 251 IDEANLNQKIEEMELRIEKLEEE---LRDVAALE 281 (788)
Q Consensus 251 ~~~~~~~~kieele~rie~LE~E---LREaAAlE 281 (788)
|.-.+|..+|.||+.|+..||.| ||..|.-|
T Consensus 15 EEVevLKe~I~EL~e~~~qLE~EN~~Lk~~aspE 48 (78)
T 1dip_A 15 EEVEILKEQIRELVEKNSQLERENTLLKTLASPE 48 (78)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHH
Confidence 44568999999999999999998 67776655
No 9
>2er8_A Regulatory protein Leu3; Zn(2)Cys(6) binuclear cluster motif, transcription activator/DNA complex; 2.85A {Saccharomyces cerevisiae} PDB: 2ere_A 2erg_A
Probab=19.41 E-value=47 Score=26.29 Aligned_cols=21 Identities=24% Similarity=0.441 Sum_probs=17.3
Q ss_pred hHhHHHHHHHHHHHHHHHHHH
Q 003892 257 NQKIEEMELRIEKLEEELRDV 277 (788)
Q Consensus 257 ~~kieele~rie~LE~ELREa 277 (788)
...+++||.+|+.||..|...
T Consensus 48 ~~~~~~Le~ri~~Le~~l~~l 68 (72)
T 2er8_A 48 RARNEAIEKRFKELTRTLTNL 68 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 478889999999999888753
No 10
>4f2d_A L-arabinose isomerase; structural genomics, PSI-1, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; HET: MSE RB0; 2.30A {Escherichia coli} PDB: 2ajt_A 2hxg_A
Probab=19.07 E-value=57 Score=35.78 Aligned_cols=25 Identities=16% Similarity=0.335 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHhhhhcccccCCCCc
Q 003892 271 EEELRDVAALEISLYSVVPEHGSSA 295 (788)
Q Consensus 271 E~ELREaAAlEvsLYSVVaEHGSSs 295 (788)
+++|+.+|.+|+||=.++.|||..+
T Consensus 250 ~e~l~~~Ar~~~Alk~~lee~~~~A 274 (500)
T 4f2d_A 250 RQNVLEAARIELGMKRFLEQGGFHA 274 (500)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCSE
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCE
Confidence 7899999999999999999999873
Done!