Query 003892
Match_columns 788
No_of_seqs 49 out of 51
Neff 2.6
Searched_HMMs 13730
Date Mon Mar 25 07:28:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003892.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/003892hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1bjna_ c.67.1.4 (A:) Phosphos 20.6 20 0.0015 31.7 2.2 22 649-673 2-23 (360)
2 d2g7sa2 a.121.1.1 (A:77-192) P 18.8 17 0.0012 28.7 1.1 52 477-528 11-62 (116)
3 d2c0ra1 c.67.1.4 (A:2-362) Pho 17.7 25 0.0019 32.0 2.2 22 649-673 4-25 (361)
4 d2hhva2 e.8.1.1 (A:469-876) DN 13.3 45 0.0033 31.8 2.7 38 245-282 21-58 (408)
5 d1qtma2 e.8.1.1 (A:423-831) DN 12.5 49 0.0036 31.4 2.7 38 245-282 23-60 (409)
6 d1kfsa2 e.8.1.1 (A:519-928) DN 11.4 44 0.0032 32.2 1.9 41 245-285 23-63 (410)
7 d1w23a_ c.67.1.4 (A:) Phosphos 10.8 52 0.0038 29.4 2.2 22 649-673 4-25 (360)
8 d1fxkc_ a.2.5.1 (C:) Prefoldin 10.7 1E+02 0.0076 25.0 3.9 30 250-279 87-116 (133)
9 d1seta1 a.2.7.1 (A:1-110) Sery 10.4 1.1E+02 0.008 24.5 3.9 25 253-277 66-90 (110)
10 d1ykhb1 a.252.1.1 (B:2-130) RN 10.2 86 0.0063 26.8 3.3 19 261-279 87-105 (129)
No 1
>d1bjna_ c.67.1.4 (A:) Phosphoserine aminotransferase, PSAT {Escherichia coli [TaxId: 562]}
Probab=20.57 E-value=20 Score=31.72 Aligned_cols=22 Identities=32% Similarity=0.614 Sum_probs=18.1
Q ss_pred hccCCCCCCCCCCCChHHHHHhhhh
Q 003892 649 LCNFTPDEFCPDAVPGAVLEALNAE 673 (788)
Q Consensus 649 L~NF~PDEFcPDPVP~~VlEaLnsE 673 (788)
+.||+| -|=.||+.|++|+...
T Consensus 2 ~~nF~p---GP~~~p~~Vl~a~~~~ 23 (360)
T d1bjna_ 2 IFNFSS---GPAMLPAEVLKQAQQE 23 (360)
T ss_dssp CEECCS---SSCCCCHHHHHHHHHT
T ss_pred eEEeCC---CCcCCCHHHHHHHHHH
Confidence 468887 6777899999998865
No 2
>d2g7sa2 a.121.1.1 (A:77-192) Putative transcriptional regulator Atu0279 {Agrobacterium tumefaciens [TaxId: 358]}
Probab=18.77 E-value=17 Score=28.66 Aligned_cols=52 Identities=17% Similarity=0.238 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHccccCCCCCCCCchHHHHHHHHHHHHHHhHHHHHHHHh
Q 003892 477 INLWKNAFQDALQKLCPVRAGGHECGCLPVLGRMVMEQCVARLDVAMFNAIL 528 (788)
Q Consensus 477 I~LWK~AF~dA~eRLCP~RagghECGCLpvLaRlVMEqcVaRLDVAMFNAIL 528 (788)
++.|+..+++...+.|++-....|-+.+|--.|..+.+...++=..+-..|-
T Consensus 11 ~~~~~~~~~~~~~~gCl~~~~a~E~~~~~~~v~~~~~~~~~~~~~~l~~~l~ 62 (116)
T d2g7sa2 11 IGYWEGCIADATHPFCVCALLASEIPVLPETVVLEVRAHFRSLSDWLTAVLE 62 (116)
T ss_dssp HHHHHHHHHHCSSCSCHHHHHHTTGGGSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhCCCCCCCHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5789988888877889999888898888887888888777777554444443
No 3
>d2c0ra1 c.67.1.4 (A:2-362) Phosphoserine aminotransferase, PSAT {Bacillus circulans, subsp. alkalophilus [TaxId: 1397]}
Probab=17.71 E-value=25 Score=31.95 Aligned_cols=22 Identities=45% Similarity=0.584 Sum_probs=18.0
Q ss_pred hccCCCCCCCCCCCChHHHHHhhhh
Q 003892 649 LCNFTPDEFCPDAVPGAVLEALNAE 673 (788)
Q Consensus 649 L~NF~PDEFcPDPVP~~VlEaLnsE 673 (788)
+.||.| =|=+||+.|+||+..+
T Consensus 4 ~~~F~p---GP~~vp~~V~eam~~~ 25 (361)
T d2c0ra1 4 AYNFNA---GPAALPLEVLERAQAE 25 (361)
T ss_dssp CEECCS---SSCCCCHHHHHHHHHT
T ss_pred CcccCC---CCcCCCHHHHHHHHHH
Confidence 468888 7888899999998644
No 4
>d2hhva2 e.8.1.1 (A:469-876) DNA polymerase I (Klenow fragment) {Bacillus stearothermophilus, newly identified strain as yet unnamed [TaxId: 1422]}
Probab=13.28 E-value=45 Score=31.83 Aligned_cols=38 Identities=24% Similarity=0.376 Sum_probs=30.8
Q ss_pred ccccccchhhhHhHhHHHHHHHHHHHHHHHHHHHHHHh
Q 003892 245 EESGEHIDEANLNQKIEEMELRIEKLEEELRDVAALEI 282 (788)
Q Consensus 245 ee~~~~~~~~~~~~kieele~rie~LE~ELREaAAlEv 282 (788)
|-+|..-|...+.+-.++++.+++.||+++.+.|..++
T Consensus 21 E~~Gi~vD~e~l~~~~~~l~~~~~~le~~i~~~~G~~f 58 (408)
T d2hhva2 21 EFAGVKVDTKRLEQMGKELAEQLGTVEQRIYELAGQEF 58 (408)
T ss_dssp HHHCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHTSCC
T ss_pred HHhCeEECHHHHHHHHHHHHHHHHHHHHHHHHHhCCcC
Confidence 55566677788889999999999999999998876443
No 5
>d1qtma2 e.8.1.1 (A:423-831) DNA polymerase I (Klenow fragment) {Thermus aquaticus [TaxId: 271]}
Probab=12.45 E-value=49 Score=31.38 Aligned_cols=38 Identities=29% Similarity=0.323 Sum_probs=31.5
Q ss_pred ccccccchhhhHhHhHHHHHHHHHHHHHHHHHHHHHHh
Q 003892 245 EESGEHIDEANLNQKIEEMELRIEKLEEELRDVAALEI 282 (788)
Q Consensus 245 ee~~~~~~~~~~~~kieele~rie~LE~ELREaAAlEv 282 (788)
|.++-.-|...+.+..++++.+++.||+|+++.|..++
T Consensus 23 e~~Gi~vD~~~l~~~~~~~~~~~~~l~~~~~~~~g~~f 60 (409)
T d1qtma2 23 EATGVRLDVAYLRALSLEVAEEIARLEAEVFRLAGHPF 60 (409)
T ss_dssp HHHCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHTSCC
T ss_pred HHhCeEeCHHHHHHHHHHHHHHHHHHHHHHHHHhCCcC
Confidence 55666777888889999999999999999999876553
No 6
>d1kfsa2 e.8.1.1 (A:519-928) DNA polymerase I (Klenow fragment) {Escherichia coli [TaxId: 562]}
Probab=11.37 E-value=44 Score=32.16 Aligned_cols=41 Identities=34% Similarity=0.537 Sum_probs=33.3
Q ss_pred ccccccchhhhHhHhHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 003892 245 EESGEHIDEANLNQKIEEMELRIEKLEEELRDVAALEISLY 285 (788)
Q Consensus 245 ee~~~~~~~~~~~~kieele~rie~LE~ELREaAAlEvsLY 285 (788)
|.++..-|...+.+..++++.+++.||+|+.+.|..++.+.
T Consensus 23 e~~Gi~vD~e~l~~~~~~~~~~~~~l~~~~~~~~g~~fn~~ 63 (410)
T d1kfsa2 23 ERNGVKIDPKVLHNHSEELTLRLAELEKKAHEIAGEEFNLS 63 (410)
T ss_dssp HHHCBCBCHHHHHHHHHHHHHHHHHHHHHHHHHSSSCCCSC
T ss_pred HHhCEEECHHHHHHHHHHHHHHHHHHHHHHHHHhCCcCCCC
Confidence 55666777888899999999999999999998877665543
No 7
>d1w23a_ c.67.1.4 (A:) Phosphoserine aminotransferase, PSAT {Bacillus alcalophilus [TaxId: 1445]}
Probab=10.83 E-value=52 Score=29.39 Aligned_cols=22 Identities=36% Similarity=0.599 Sum_probs=18.2
Q ss_pred hccCCCCCCCCCCCChHHHHHhhhh
Q 003892 649 LCNFTPDEFCPDAVPGAVLEALNAE 673 (788)
Q Consensus 649 L~NF~PDEFcPDPVP~~VlEaLnsE 673 (788)
+.||.| -|=+||+.|+||+...
T Consensus 4 ~~nF~p---GP~~~p~~V~~a~~~~ 25 (360)
T d1w23a_ 4 VFNFNA---GPSALPKPALERAQKE 25 (360)
T ss_dssp CEECCS---SSCCCCHHHHHHHHHT
T ss_pred eeEeCC---CCcCCCHHHHHHHHHH
Confidence 468888 7888899999998754
No 8
>d1fxkc_ a.2.5.1 (C:) Prefoldin alpha subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=10.70 E-value=1e+02 Score=25.04 Aligned_cols=30 Identities=20% Similarity=0.368 Sum_probs=23.4
Q ss_pred cchhhhHhHhHHHHHHHHHHHHHHHHHHHH
Q 003892 250 HIDEANLNQKIEEMELRIEKLEEELRDVAA 279 (788)
Q Consensus 250 ~~~~~~~~~kieele~rie~LE~ELREaAA 279 (788)
++-..++..++++|+..+++|++++..+.+
T Consensus 87 ~eA~~~l~~ri~~l~~~~~~l~~~~~~~~~ 116 (133)
T d1fxkc_ 87 EDAMESIKSQKNELESTLQKMGENLRAITD 116 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455668888899999888888888876644
No 9
>d1seta1 a.2.7.1 (A:1-110) Seryl-tRNA synthetase (SerRS) {Thermus thermophilus, strain hb27 [TaxId: 274]}
Probab=10.40 E-value=1.1e+02 Score=24.48 Aligned_cols=25 Identities=24% Similarity=0.333 Sum_probs=16.9
Q ss_pred hhhHhHhHHHHHHHHHHHHHHHHHH
Q 003892 253 EANLNQKIEEMELRIEKLEEELRDV 277 (788)
Q Consensus 253 ~~~~~~kieele~rie~LE~ELREa 277 (788)
...+..+..+|..+|..||++|.++
T Consensus 66 ~~~l~~~~k~lk~~i~~le~~~~~~ 90 (110)
T d1seta1 66 KEALIARGKALGEEAKRLEEALREK 90 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666777777777777777664
No 10
>d1ykhb1 a.252.1.1 (B:2-130) RNA polymerase II holoenzyme component SRB7 (MED21) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=10.18 E-value=86 Score=26.79 Aligned_cols=19 Identities=32% Similarity=0.441 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 003892 261 EEMELRIEKLEEELRDVAA 279 (788)
Q Consensus 261 eele~rie~LE~ELREaAA 279 (788)
++-..+|.+||+|+++++.
T Consensus 87 e~Q~~~i~~Le~E~~~~~~ 105 (129)
T d1ykhb1 87 EEQLRKIDMLQKKLVEVED 105 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Done!