BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 003893
(788 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 186 bits (471), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 169/559 (30%), Positives = 253/559 (45%), Gaps = 72/559 (12%)
Query: 194 FLYNQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDSLVGPFRLPIHSHKQLRLL 253
FL + L+++ +S K++ +F + + T+L+ L++ ++ VGP +P K L+ L
Sbjct: 218 FLGDCSALQHLDISGNKLSGDF-SRAISTCTELKLLNISSNQFVGP--IPPLPLKSLQYL 274
Query: 254 DVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFG------------------- 294
+++N F G IP + LT ++S N G++P FG
Sbjct: 275 SLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGEL 334
Query: 295 ------NMNFLQFLDLSNNQLTGEIPEHLAMGCVXXXXXXXXXXXXEGHMF---SRNFNL 345
M L+ LDLS N+ +GE+PE L G + +N
Sbjct: 335 PMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKN 394
Query: 346 TNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNH 405
T L L L+ N F G+IP +LS CS L L LS N LSG IP LG+L+ LR + + N
Sbjct: 395 T-LQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNM 453
Query: 406 IEGPIPLEFCQLRILQILDISDNNISGSLPSCY-DFVCIEQVHLSKNMLHGQLKE--GTF 462
+EG IP E ++ L+ L + N+++G +PS + + + LS N L G++ + G
Sbjct: 454 LEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRL 513
Query: 463 FNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIXXXXXXXXXXXXXX 522
N L IL LS N +GNIP + L +L L N G +P
Sbjct: 514 EN---LAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFI 570
Query: 523 XXXXHGHIPSCFDNTTLH-------------ERYNNGSSLQPFETSFVIMGGMDVDPKKQ 569
+ +I + H E+ N S+ P + + GG
Sbjct: 571 AGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGH------- 623
Query: 570 ILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAG 629
S T+ G + LD+S N L G+IP +IG++ + LNL HN+++G
Sbjct: 624 ---------TSPTFDNNGS----MMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISG 670
Query: 630 PIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSGKIPERAAQFATF 689
IP +LR + LDLS NKL +IP + L L ++ NNLSG IPE QF TF
Sbjct: 671 SIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPE-MGQFETF 729
Query: 690 NESSYEGNPFLCGPPLPIC 708
+ + NP LCG PLP C
Sbjct: 730 PPAKFLNNPGLCGYPLPRC 748
Score = 105 bits (262), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 124/460 (26%), Positives = 194/460 (42%), Gaps = 71/460 (15%)
Query: 249 QLRLLDVSKNNFQGHIPL--EIGDILSRLTVFNISMNALDGSIPSSFG-NMNFLQFLDLS 305
L LD+S+N+ G + +G S L N+S N LD S G +N L+ LDLS
Sbjct: 101 SLTSLDLSRNSLSGPVTTLTSLGSC-SGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLS 159
Query: 306 NNQLTGE--IPEHLAMGCVXXXXXXXXXXXXEGHMFSRNFNLTNLIWLQLEGNHFVGEIP 363
N ++G + L+ GC L L + GN G++
Sbjct: 160 ANSISGANVVGWVLSDGC------------------------GELKHLAISGNKISGDV- 194
Query: 364 QSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQIL 423
+S+C +L+ L +S+N+ S IP +LG+ + L+H+ + N + G L++L
Sbjct: 195 -DVSRCVNLEFLDVSSNNFSTGIP-FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLL 252
Query: 424 DISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIP 483
+IS N G +P ++ + L++N G++ + C TL LDLS NH G +P
Sbjct: 253 NISSNQFVGPIPP-LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVP 311
Query: 484 DRVDGLSQLSYLILAHNNLEGEVPIXXXXXXXXXXXXXXXXXX-HGHIPSCFDNT----- 537
S L L L+ NN GE+P+ G +P N
Sbjct: 312 PFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLL 371
Query: 538 TLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLD 597
TL NN S I+ + +PK + E L
Sbjct: 372 TLDLSSNNFSG--------PILPNLCQNPKNTLQE-----------------------LY 400
Query: 598 LSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPY 657
L N G IPP + N +++ +L+LS N L+G IPS+ +L + L L N L +IP
Sbjct: 401 LQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQ 460
Query: 658 QLVELNTLAVFSVAYNNLSGKIPERAAQFATFNESSYEGN 697
+L+ + TL + +N+L+G+IP + N S N
Sbjct: 461 ELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNN 500
Score = 73.2 bits (178), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 74/282 (26%), Positives = 121/282 (42%), Gaps = 47/282 (16%)
Query: 192 PKFLYNQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDSLVGPFRLPIHSHKQLR 251
P+ L LE + L + E P+ L N T L +SL N+ L G I + L
Sbjct: 459 PQELMYVKTLETLILDFNDLTGEIPSGL-SNCTNLNWISLSNNRLTGEIPKWIGRLENLA 517
Query: 252 LLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSF------------------ 293
+L +S N+F G+IP E+GD S L +++ N +G+IP++
Sbjct: 518 ILKLSNNSFSGNIPAELGDCRS-LIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYV 576
Query: 294 ------------GNMNFLQFLDLSN---NQLTGEIPEHLAMGCVXXXXXXXXXXXXEGHM 338
G N L+F + + N+L+ P ++ GH
Sbjct: 577 YIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNIT------------SRVYGGHT 624
Query: 339 FSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRH 398
N ++++L + N G IP+ + L L L +N +SG IP +G+L L
Sbjct: 625 SPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNI 684
Query: 399 IIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDF 440
+ + N ++G IP L +L +D+S+NN+SG +P F
Sbjct: 685 LDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQF 726
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 185 bits (470), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 169/559 (30%), Positives = 253/559 (45%), Gaps = 72/559 (12%)
Query: 194 FLYNQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDSLVGPFRLPIHSHKQLRLL 253
FL + L+++ +S K++ +F + + T+L+ L++ ++ VGP +P K L+ L
Sbjct: 215 FLGDCSALQHLDISGNKLSGDF-SRAISTCTELKLLNISSNQFVGP--IPPLPLKSLQYL 271
Query: 254 DVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFG------------------- 294
+++N F G IP + LT ++S N G++P FG
Sbjct: 272 SLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGEL 331
Query: 295 ------NMNFLQFLDLSNNQLTGEIPEHLAMGCVXXXXXXXXXXXXEGHMF---SRNFNL 345
M L+ LDLS N+ +GE+PE L G + +N
Sbjct: 332 PMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKN 391
Query: 346 TNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNH 405
T L L L+ N F G+IP +LS CS L L LS N LSG IP LG+L+ LR + + N
Sbjct: 392 T-LQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNM 450
Query: 406 IEGPIPLEFCQLRILQILDISDNNISGSLPSCY-DFVCIEQVHLSKNMLHGQLKE--GTF 462
+EG IP E ++ L+ L + N+++G +PS + + + LS N L G++ + G
Sbjct: 451 LEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRL 510
Query: 463 FNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIXXXXXXXXXXXXXX 522
N L IL LS N +GNIP + L +L L N G +P
Sbjct: 511 EN---LAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFI 567
Query: 523 XXXXHGHIPSCFDNTTLH-------------ERYNNGSSLQPFETSFVIMGGMDVDPKKQ 569
+ +I + H E+ N S+ P + + GG
Sbjct: 568 AGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGH------- 620
Query: 570 ILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAG 629
S T+ G + LD+S N L G+IP +IG++ + LNL HN+++G
Sbjct: 621 ---------TSPTFDNNGS----MMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISG 667
Query: 630 PIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSGKIPERAAQFATF 689
IP +LR + LDLS NKL +IP + L L ++ NNLSG IPE QF TF
Sbjct: 668 SIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPE-MGQFETF 726
Query: 690 NESSYEGNPFLCGPPLPIC 708
+ + NP LCG PLP C
Sbjct: 727 PPAKFLNNPGLCGYPLPRC 745
Score = 105 bits (262), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 124/460 (26%), Positives = 194/460 (42%), Gaps = 71/460 (15%)
Query: 249 QLRLLDVSKNNFQGHIPL--EIGDILSRLTVFNISMNALDGSIPSSFG-NMNFLQFLDLS 305
L LD+S+N+ G + +G S L N+S N LD S G +N L+ LDLS
Sbjct: 98 SLTSLDLSRNSLSGPVTTLTSLGSC-SGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLS 156
Query: 306 NNQLTGE--IPEHLAMGCVXXXXXXXXXXXXEGHMFSRNFNLTNLIWLQLEGNHFVGEIP 363
N ++G + L+ GC L L + GN G++
Sbjct: 157 ANSISGANVVGWVLSDGC------------------------GELKHLAISGNKISGDV- 191
Query: 364 QSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQIL 423
+S+C +L+ L +S+N+ S IP +LG+ + L+H+ + N + G L++L
Sbjct: 192 -DVSRCVNLEFLDVSSNNFSTGIP-FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLL 249
Query: 424 DISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIP 483
+IS N G +P ++ + L++N G++ + C TL LDLS NH G +P
Sbjct: 250 NISSNQFVGPIPP-LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVP 308
Query: 484 DRVDGLSQLSYLILAHNNLEGEVPIXXXXXXXXXXXXXXXXXX-HGHIPSCFDNT----- 537
S L L L+ NN GE+P+ G +P N
Sbjct: 309 PFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLL 368
Query: 538 TLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLD 597
TL NN S I+ + +PK + E L
Sbjct: 369 TLDLSSNNFSG--------PILPNLCQNPKNTLQE-----------------------LY 397
Query: 598 LSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPY 657
L N G IPP + N +++ +L+LS N L+G IPS+ +L + L L N L +IP
Sbjct: 398 LQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQ 457
Query: 658 QLVELNTLAVFSVAYNNLSGKIPERAAQFATFNESSYEGN 697
+L+ + TL + +N+L+G+IP + N S N
Sbjct: 458 ELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNN 497
Score = 73.2 bits (178), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 74/282 (26%), Positives = 121/282 (42%), Gaps = 47/282 (16%)
Query: 192 PKFLYNQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDSLVGPFRLPIHSHKQLR 251
P+ L LE + L + E P+ L N T L +SL N+ L G I + L
Sbjct: 456 PQELMYVKTLETLILDFNDLTGEIPSGL-SNCTNLNWISLSNNRLTGEIPKWIGRLENLA 514
Query: 252 LLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSF------------------ 293
+L +S N+F G+IP E+GD S L +++ N +G+IP++
Sbjct: 515 ILKLSNNSFSGNIPAELGDCRS-LIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYV 573
Query: 294 ------------GNMNFLQFLDLSN---NQLTGEIPEHLAMGCVXXXXXXXXXXXXEGHM 338
G N L+F + + N+L+ P ++ GH
Sbjct: 574 YIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNIT------------SRVYGGHT 621
Query: 339 FSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRH 398
N ++++L + N G IP+ + L L L +N +SG IP +G+L L
Sbjct: 622 SPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNI 681
Query: 399 IIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDF 440
+ + N ++G IP L +L +D+S+NN+SG +P F
Sbjct: 682 LDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQF 723
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 73.9 bits (180), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 70/257 (27%), Positives = 104/257 (40%), Gaps = 55/257 (21%)
Query: 476 NHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIXXXXXXXXXXXXXXXXXXHGHIPSCFD 535
N+L G IP + L+QL YL + H N+ G +P
Sbjct: 87 NNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL------------------- 127
Query: 536 NTTLHERYNN-GSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLS 594
TL YN +L P +S + G+ D + + +I +Y G L +
Sbjct: 128 -VTLDFSYNALSGTLPPSISSLPNLVGITFDGNR--------ISGAIPDSY-GSFSKLFT 177
Query: 595 GLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSN----------------- 637
+ +S NRL G IPP NL + ++LS N L G F +
Sbjct: 178 SMTISRNRLTGKIPPTFANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFD 236
Query: 638 ------LRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSGKIPERAAQFATFNE 691
+N+ LDL N++ +P L +L L +V++NNL G+IP+ F+
Sbjct: 237 LGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GGNLQRFDV 295
Query: 692 SSYEGNPFLCGPPLPIC 708
S+Y N LCG PLP C
Sbjct: 296 SAYANNKCLCGSPLPAC 312
Score = 66.2 bits (160), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 70/251 (27%), Positives = 109/251 (43%), Gaps = 53/251 (21%)
Query: 258 NNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHL 317
NN G IP I L++L I+ + G+IP + L LD S N L+G +P +
Sbjct: 87 NNLVGPIPPAIAK-LTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSI 145
Query: 318 AMGCVXXXXXXXXXXXXEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSL-QGLF 376
+ +L NL+ + +GN G IP S S L +
Sbjct: 146 S-------------------------SLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMT 180
Query: 377 LSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPS 436
+S N L+GKIP NL L + + +N +EG + F + Q + ++ N+++
Sbjct: 181 ISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLA----- 234
Query: 437 CYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLI 496
+D + +V LSKN L+G LDL N + G +P + L L L
Sbjct: 235 -FD---LGKVGLSKN-LNG---------------LDLRNNRIYGTLPQGLTQLKFLHSLN 274
Query: 497 LAHNNLEGEVP 507
++ NNL GE+P
Sbjct: 275 VSFNNLCGEIP 285
Score = 63.9 bits (154), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 63/225 (28%), Positives = 88/225 (39%), Gaps = 5/225 (2%)
Query: 191 FPKFLYNQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDSLVGPFRLPIHSHKQL 250
P + L Y+ ++H ++ P++L + T L L ++L G I S L
Sbjct: 93 IPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKT-LVTLDFSYNALSGTLPPSISSLPNL 151
Query: 251 RLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLT 310
+ N G IP G T IS N L G IP +F N+N L F+DLS N L
Sbjct: 152 VGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLE 210
Query: 311 GEIPEHLAMGCVXXXXXXXXXXXXEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCS 370
G+ + G + NL L L N G +PQ L++
Sbjct: 211 GD--ASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLK 268
Query: 371 SLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFC 415
L L +S N+L G+IP+ GNL N PL C
Sbjct: 269 FLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLCGSPLPAC 312
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 47/151 (31%), Positives = 75/151 (49%), Gaps = 7/151 (4%)
Query: 362 IPQSLSKCSSLQGLFLSN-NSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRIL 420
IP SL+ L L++ N+L G IP + LT L ++ + ++ G IP Q++ L
Sbjct: 68 IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL 127
Query: 421 QILDISDNNISGSL-PSCYDFVCIEQVHLSKNMLHGQLKE--GTFFNCLTLMILDLSYNH 477
LD S N +SG+L PS + + N + G + + G+F T M +S N
Sbjct: 128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMT--ISRNR 185
Query: 478 LNGNIPDRVDGLSQLSYLILAHNNLEGEVPI 508
L G IP L+ L+++ L+ N LEG+ +
Sbjct: 186 LTGKIPPTFANLN-LAFVDLSRNMLEGDASV 215
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 45/92 (48%), Gaps = 1/92 (1%)
Query: 607 IPPQIGNLTKIQTLNLSH-NNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTL 665
IP + NL + L + NNL GPIP + L + L +++ +S IP L ++ TL
Sbjct: 68 IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL 127
Query: 666 AVFSVAYNNLSGKIPERAAQFATFNESSYEGN 697
+YN LSG +P + +++GN
Sbjct: 128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGN 159
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/144 (31%), Positives = 67/144 (46%), Gaps = 12/144 (8%)
Query: 367 SKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIE--GPIPLEFCQLRILQILD 424
SK S L SNN L+ + G+LT L +I+ N ++ I Q++ LQ LD
Sbjct: 321 SKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLD 380
Query: 425 ISDNNIS--GSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCL--TLMILDLSYNHLNG 480
IS N++S C + +++S N+L T F CL + +LDL N +
Sbjct: 381 ISQNSVSYDEKKGDCSWTKSLLSLNMSSNIL-----TDTIFRCLPPRIKVLDLHSNKIKS 435
Query: 481 NIPDRVDGLSQLSYLILAHNNLEG 504
IP +V L L L +A N L+
Sbjct: 436 -IPKQVVKLEALQELNVASNQLKS 458
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 51/119 (42%), Gaps = 10/119 (8%)
Query: 537 TTLHERYNNGSSLQPFETSFVIMGGMDVDPKK------QILESFDFTTKSITYTYQGRVP 590
+ + E SLQ + S + D KK + L S + ++ +T T +P
Sbjct: 364 SKIAEMTTQMKSLQQLDIS---QNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP 420
Query: 591 SLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYN 649
+ LDL N+ I IP Q+ L +Q LN++ N L F L +++ + L N
Sbjct: 421 PRIKVLDLHSNK-IKSIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTN 478
Score = 30.8 bits (68), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 2/60 (3%)
Query: 596 LDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLA--GPIPSTFSNLRNIESLDLSYNKLSW 653
LD S N L + G+LT+++TL L N L I + +++++ LD+S N +S+
Sbjct: 329 LDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSY 388
Score = 29.6 bits (65), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 43/86 (50%), Gaps = 15/86 (17%)
Query: 237 VGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDI----LSRLTV--------FNISMNA 284
+ R+ I SH +++ LD+S F+ + LE D+ L +++ ++S NA
Sbjct: 44 LSKLRILIISHNRIQYLDISV--FKFNQELEYLDLSHNKLVKISCHPTVNLKHLDLSFNA 101
Query: 285 LDG-SIPSSFGNMNFLQFLDLSNNQL 309
D I FGNM+ L+FL LS L
Sbjct: 102 FDALPICKEFGNMSQLKFLGLSTTHL 127
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 38.1 bits (87), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 49/96 (51%), Gaps = 2/96 (2%)
Query: 607 IPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLA 666
+P ++ N + ++LS+N ++ +FSN+ + +L LSYN+L P L +L
Sbjct: 46 VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLR 105
Query: 667 VFSVAYNNLSGKIPERA-AQFATFNESSYEGNPFLC 701
+ S+ N++S +PE A + + + NP C
Sbjct: 106 LLSLHGNDIS-VVPEGAFNDLSALSHLAIGANPLYC 140
Score = 34.7 bits (78), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 42/81 (51%), Gaps = 1/81 (1%)
Query: 351 LQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPI 410
L L+GN F +P+ LS L + LSNN +S + N+T L +I+ N +
Sbjct: 36 LYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIP 94
Query: 411 PLEFCQLRILQILDISDNNIS 431
P F L+ L++L + N+IS
Sbjct: 95 PRTFDGLKSLRLLSLHGNDIS 115
Score = 32.7 bits (73), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 42/83 (50%)
Query: 593 LSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLS 652
L+ +DLS NR+ N+T++ TL LS+N L P TF L+++ L L N +S
Sbjct: 56 LTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDIS 115
Query: 653 WKIPYQLVELNTLAVFSVAYNNL 675
+L+ L+ ++ N L
Sbjct: 116 VVPEGAFNDLSALSHLAIGANPL 138
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 38.1 bits (87), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 29/42 (69%), Gaps = 1/42 (2%)
Query: 611 IGNLTKIQTLNLSHNNLAG-PIPSTFSNLRNIESLDLSYNKL 651
IG+L ++ LN++HN + +P FSNL N+E LDLS NK+
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 161
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 48/171 (28%), Positives = 72/171 (42%), Gaps = 6/171 (3%)
Query: 336 GHMFSRNFNLTNLIWLQLEGN--HFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNL 393
G+ FS +L +L +L L N F G QS +SL+ L LS N + +LG L
Sbjct: 338 GNAFSE-VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLG-L 395
Query: 394 TVLRHIIMPKNHIEGPIPLE-FCQLRILQILDISDNNISGSLPSCYD-FVCIEQVHLSKN 451
L H+ ++++ F LR L LDIS + + ++ +E + ++ N
Sbjct: 396 EQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGN 455
Query: 452 MLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNL 502
F L LDLS L P + LS L L ++HNN
Sbjct: 456 SFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNF 506
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Query: 614 LTKIQTLNLSHNNLAGP-IPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAY 672
L+ ++ L ++ N+ +P F+ LRN+ LDLS +L P L++L V ++++
Sbjct: 444 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSH 503
Query: 673 NNL 675
NN
Sbjct: 504 NNF 506
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 42/85 (49%), Gaps = 1/85 (1%)
Query: 593 LSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLS 652
L+ LDLS +L P +L+ +Q LN+SHNN + L +++ LD S N +
Sbjct: 472 LTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIM 531
Query: 653 WKIPYQLVEL-NTLAVFSVAYNNLS 676
+L ++LA ++ N+ +
Sbjct: 532 TSKKQELQHFPSSLAFLNLTQNDFA 556
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 38.1 bits (87), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 29/42 (69%), Gaps = 1/42 (2%)
Query: 611 IGNLTKIQTLNLSHNNLAG-PIPSTFSNLRNIESLDLSYNKL 651
IG+L ++ LN++HN + +P FSNL N+E LDLS NK+
Sbjct: 144 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 185
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Query: 614 LTKIQTLNLSHNNLAGP-IPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAY 672
L+ ++ L ++ N+ +P F+ LRN+ LDLS +L P L++L V ++++
Sbjct: 468 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSH 527
Query: 673 NNL 675
NN
Sbjct: 528 NNF 530
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 65/266 (24%), Positives = 107/266 (40%), Gaps = 37/266 (13%)
Query: 416 QLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNML--HGQLKEGTFFNCLTLMILDL 473
+L+ L+ L + N G+ S D +E + LS+N L G + F ++L LDL
Sbjct: 347 KLKSLKRLTFTSNK-GGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDF-GTISLKYLDL 404
Query: 474 SYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIXXXXXXXXXXXXXXXXXXHGHIPSC 533
S+N + + GL QL +L H+NL+ + H H
Sbjct: 405 SFNGV-ITMSSNFLGLEQLEHLDFQHSNLK---QMSEFSVFLSLRNLIYLDISHTHTRVA 460
Query: 534 FDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESF--DFTTKSITYTYQGRVPS 591
F+ +N SSL+ + M G E+F D T+ T+
Sbjct: 461 FNGI-----FNGLSSLEVLK-----MAG------NSFQENFLPDIFTELRNLTF------ 498
Query: 592 LLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKL 651
LDLS +L P +L+ +Q LN+SHNN + L +++ LD S N +
Sbjct: 499 ----LDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHI 554
Query: 652 SWKIPYQLVEL-NTLAVFSVAYNNLS 676
+L ++LA ++ N+ +
Sbjct: 555 MTSKKQELQHFPSSLAFLNLTQNDFA 580
Score = 30.8 bits (68), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 48/171 (28%), Positives = 71/171 (41%), Gaps = 6/171 (3%)
Query: 336 GHMFSRNFNLTNLIWLQLEGN--HFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNL 393
G+ FS +L +L +L L N F G QS SL+ L LS N + +LG L
Sbjct: 362 GNAFSE-VDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLG-L 419
Query: 394 TVLRHIIMPKNHIEGPIPLE-FCQLRILQILDISDNNISGSLPSCYD-FVCIEQVHLSKN 451
L H+ ++++ F LR L LDIS + + ++ +E + ++ N
Sbjct: 420 EQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGN 479
Query: 452 MLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNL 502
F L LDLS L P + LS L L ++HNN
Sbjct: 480 SFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNF 530
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 37.7 bits (86), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 48/113 (42%), Gaps = 3/113 (2%)
Query: 593 LSGLDLSCNRLIGH--IPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNK 650
L LDLS N + Q+ NL+ +QTLNLSHN G F +E LDL++ +
Sbjct: 349 LQTLDLSHNDIEASDCCSLQLKNLSHLQTLNLSHNEPLGLQSQAFKECPQLELLDLAFTR 408
Query: 651 LSWKIPYQ-LVELNTLAVFSVAYNNLSGKIPERAAQFATFNESSYEGNPFLCG 702
L P L+ L V ++ Y L A + +GN F G
Sbjct: 409 LHINAPQSPFQNLHFLQVLNLTYCFLDTSNQHLLAGLPVLRHLNLKGNHFQDG 461
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 37.7 bits (86), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 29/42 (69%), Gaps = 1/42 (2%)
Query: 611 IGNLTKIQTLNLSHNNLAG-PIPSTFSNLRNIESLDLSYNKL 651
IG+L ++ LN++HN + +P FSNL N+E LDLS NK+
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 161
Score = 32.7 bits (73), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 42/92 (45%), Gaps = 1/92 (1%)
Query: 614 LTKIQTLNLSHNNLAGP-IPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAY 672
L+ ++ L ++ N+ +P F+ LRN+ LDLS +L P L++L V ++A
Sbjct: 444 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMAS 503
Query: 673 NNLSGKIPERAAQFATFNESSYEGNPFLCGPP 704
N L + + + NP+ C P
Sbjct: 504 NQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 535
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 37.7 bits (86), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 29/42 (69%), Gaps = 1/42 (2%)
Query: 611 IGNLTKIQTLNLSHNNLAG-PIPSTFSNLRNIESLDLSYNKL 651
IG+L ++ LN++HN + +P FSNL N+E LDLS NK+
Sbjct: 121 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 162
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 37.7 bits (86), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 29/42 (69%), Gaps = 1/42 (2%)
Query: 611 IGNLTKIQTLNLSHNNLAG-PIPSTFSNLRNIESLDLSYNKL 651
IG+L ++ LN++HN + +P FSNL N+E LDLS NK+
Sbjct: 122 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 163
>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
Length = 279
Score = 37.7 bits (86), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 29/42 (69%), Gaps = 1/42 (2%)
Query: 611 IGNLTKIQTLNLSHNNLAG-PIPSTFSNLRNIESLDLSYNKL 651
IG+L ++ LN++HN + +P FSNL N+E LDLS NK+
Sbjct: 122 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 163
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 37.4 bits (85), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 29/42 (69%), Gaps = 1/42 (2%)
Query: 611 IGNLTKIQTLNLSHNNLAG-PIPSTFSNLRNIESLDLSYNKL 651
IG+L ++ LN++HN + +P FSNL N+E LDLS NK+
Sbjct: 121 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 162
>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
Length = 276
Score = 37.4 bits (85), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 29/42 (69%), Gaps = 1/42 (2%)
Query: 611 IGNLTKIQTLNLSHNNLAG-PIPSTFSNLRNIESLDLSYNKL 651
IG+L ++ LN++HN + +P FSNL N+E LDLS NK+
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 161
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 35.8 bits (81), Expect = 0.097, Method: Composition-based stats.
Identities = 31/89 (34%), Positives = 45/89 (50%), Gaps = 5/89 (5%)
Query: 421 QILDISDNNISGSLPSCYD-FVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLN 479
QIL + DN I+ P +D + +++++L N L G L G F + L +LDL N L
Sbjct: 43 QILYLHDNQITKLEPGVFDSLINLKELYLGSNQL-GALPVGVFDSLTQLTVLDLGTNQLT 101
Query: 480 GNIPDRV-DGLSQLSYLILAHNNLEGEVP 507
+P V D L L L + N L E+P
Sbjct: 102 -VLPSAVFDRLVHLKELFMCCNKLT-ELP 128
>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
Length = 599
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 28/40 (70%), Gaps = 1/40 (2%)
Query: 611 IGNLTKIQTLNLSHNNL-AGPIPSTFSNLRNIESLDLSYN 649
IG L ++ LN++HN + + +P+ FSNL N+ +DLSYN
Sbjct: 119 IGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYN 158
Score = 33.1 bits (74), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 53/124 (42%), Gaps = 9/124 (7%)
Query: 593 LSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLS 652
L+ LDLS +L L ++Q LN+SHNNL S ++ L ++ +LD S+N++
Sbjct: 470 LTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE 529
Query: 653 WKIPYQLVELNTLAVF--SVAYNNLSGKIPERAAQFATFNESSYEGNPFLCGPPLPICIS 710
L F S+A+ NL+ + F + E FL C +
Sbjct: 530 -------TSKGILQHFPKSLAFFNLTNNSVACICEHQKFLQWVKEQKQFLVNVEQMTCAT 582
Query: 711 PTTM 714
P M
Sbjct: 583 PVEM 586
>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ1|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ2|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
pdb|3VQ2|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
Length = 606
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 28/40 (70%), Gaps = 1/40 (2%)
Query: 611 IGNLTKIQTLNLSHNNL-AGPIPSTFSNLRNIESLDLSYN 649
IG L ++ LN++HN + + +P+ FSNL N+ +DLSYN
Sbjct: 124 IGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYN 163
Score = 32.7 bits (73), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 53/124 (42%), Gaps = 9/124 (7%)
Query: 593 LSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLS 652
L+ LDLS +L L ++Q LN+SHNNL S ++ L ++ +LD S+N++
Sbjct: 475 LTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE 534
Query: 653 WKIPYQLVELNTLAVF--SVAYNNLSGKIPERAAQFATFNESSYEGNPFLCGPPLPICIS 710
L F S+A+ NL+ + F + E FL C +
Sbjct: 535 -------TSKGILQHFPKSLAFFNLTNNSVACICEHQKFLQWVKEQKQFLVNVEQMTCAT 587
Query: 711 PTTM 714
P M
Sbjct: 588 PVEM 591
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 34.7 bits (78), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 38/74 (51%), Gaps = 1/74 (1%)
Query: 615 TKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNN 674
T I LNL+HN L + F+ + SLD+ +N +S P +L L V ++ +N
Sbjct: 25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNE 84
Query: 675 LSGKIPERAAQFAT 688
LS ++ ++ F T
Sbjct: 85 LS-QLSDKTFAFCT 97
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 22/36 (61%)
Query: 468 LMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLE 503
L +LDLSYN+LN D L QL Y L +NN++
Sbjct: 250 LTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQ 285
Score = 29.6 bits (65), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 46/110 (41%), Gaps = 7/110 (6%)
Query: 575 DFTTKSITYTYQGRVP-------SLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNL 627
+ T ++T+ R+P S L+ LD+ N + P L ++ LNL HN L
Sbjct: 26 NITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNEL 85
Query: 628 AGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSG 677
+ TF+ N+ L L N + V+ L +++N LS
Sbjct: 86 SQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSS 135
Score = 29.3 bits (64), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
Query: 615 TKIQTLNLSHNNLAGPIPSTFSNLR--NIESLDLSYNKLSWKIPYQLVELNTLAVFSVAY 672
T I+ L+LS++ L+ +TF L+ N+ LDLSYN L+ L L F + Y
Sbjct: 222 TSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEY 281
Query: 673 NNL 675
NN+
Sbjct: 282 NNI 284
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 34.3 bits (77), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 51/96 (53%), Gaps = 4/96 (4%)
Query: 557 VIMGGMDVDPKKQILESF-DFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLT 615
+I+G M P LES D++ +++T+ + +P L LS N + P I L+
Sbjct: 20 LIVGSMT--PFSNELESMVDYSNRNLTHVPKD-LPPRTKALSLSQNSISELRMPDISFLS 76
Query: 616 KIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKL 651
+++ L LSHN + F +++E LD+S+N+L
Sbjct: 77 ELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRL 112
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 34.3 bits (77), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 38/74 (51%), Gaps = 1/74 (1%)
Query: 615 TKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNN 674
T I LNL+HN L + F+ + SLD+ +N +S P +L L V ++ +N
Sbjct: 30 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNE 89
Query: 675 LSGKIPERAAQFAT 688
LS ++ ++ F T
Sbjct: 90 LS-QLSDKTFAFCT 102
Score = 31.2 bits (69), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 22/36 (61%)
Query: 468 LMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLE 503
L +LDLSYN+LN D L QL Y L +NN++
Sbjct: 255 LTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQ 290
Score = 29.3 bits (64), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 46/110 (41%), Gaps = 7/110 (6%)
Query: 575 DFTTKSITYTYQGRVP-------SLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNL 627
+ T ++T+ R+P S L+ LD+ N + P L ++ LNL HN L
Sbjct: 31 NITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNEL 90
Query: 628 AGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSG 677
+ TF+ N+ L L N + V+ L +++N LS
Sbjct: 91 SQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSS 140
Score = 29.3 bits (64), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
Query: 615 TKIQTLNLSHNNLAGPIPSTFSNLR--NIESLDLSYNKLSWKIPYQLVELNTLAVFSVAY 672
T I+ L+LS++ L+ +TF L+ N+ LDLSYN L+ L L F + Y
Sbjct: 227 TSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEY 286
Query: 673 NNL 675
NN+
Sbjct: 287 NNI 289
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 34.3 bits (77), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 38/74 (51%), Gaps = 1/74 (1%)
Query: 615 TKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNN 674
T I LNL+HN L + F+ + SLD+ +N +S P +L L V ++ +N
Sbjct: 35 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNE 94
Query: 675 LSGKIPERAAQFAT 688
LS ++ ++ F T
Sbjct: 95 LS-QLSDKTFAFCT 107
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 22/36 (61%)
Query: 468 LMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLE 503
L +LDLSYN+LN D L QL Y L +NN++
Sbjct: 260 LTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQ 295
Score = 29.3 bits (64), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 46/110 (41%), Gaps = 7/110 (6%)
Query: 575 DFTTKSITYTYQGRVP-------SLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNL 627
+ T ++T+ R+P S L+ LD+ N + P L ++ LNL HN L
Sbjct: 36 NITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNEL 95
Query: 628 AGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSG 677
+ TF+ N+ L L N + V+ L +++N LS
Sbjct: 96 SQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSS 145
Score = 29.3 bits (64), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
Query: 615 TKIQTLNLSHNNLAGPIPSTFSNLR--NIESLDLSYNKLSWKIPYQLVELNTLAVFSVAY 672
T I+ L+LS++ L+ +TF L+ N+ LDLSYN L+ L L F + Y
Sbjct: 232 TSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEY 291
Query: 673 NNL 675
NN+
Sbjct: 292 NNI 294
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 34.3 bits (77), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 41/119 (34%), Positives = 62/119 (52%), Gaps = 10/119 (8%)
Query: 390 LGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLS 449
L LT L ++I+ N ++ F +L L+ L + +N + SLP D V + +L+
Sbjct: 81 LKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQ-SLP---DGVFDKLTNLT 136
Query: 450 K-NMLHGQLK---EGTFFNCLTLMILDLSYNHLNGNIPDRV-DGLSQLSYLILAHNNLE 503
N+ H QL+ +G F L LDLSYN L ++P+ V D L+QL L L N L+
Sbjct: 137 YLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQ-SLPEGVFDKLTQLKDLRLYQNQLK 194
Score = 33.9 bits (76), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 22/38 (57%)
Query: 614 LTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKL 651
LT + LNL+HN L F L N+ LDLSYN+L
Sbjct: 132 LTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQL 169
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 48/173 (27%), Positives = 71/173 (41%), Gaps = 28/173 (16%)
Query: 337 HMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVL 396
H S LTNL +L L GN QSL G+F LT L
Sbjct: 76 HDISALKELTNLTYLILTGNQL-----QSLP-----NGVF--------------DKLTNL 111
Query: 397 RHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYD-FVCIEQVHLSKNMLHG 455
+ +++ +N ++ F +L L L+++ N + +D + ++ LS N L
Sbjct: 112 KELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQS 171
Query: 456 QLKEGTFFNCLTLMILDLSYNHLNGNIPDRV-DGLSQLSYLILAHNNLEGEVP 507
L EG F L L L N L ++PD V D L+ L Y+ L N + P
Sbjct: 172 -LPEGVFDKLTQLKDLRLYQNQLK-SVPDGVFDRLTSLQYIWLHDNPWDCTCP 222
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 33.9 bits (76), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 38/83 (45%)
Query: 593 LSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLS 652
L L+L+ N + P NL ++TL L N L F+ L N+ LD+S NK+
Sbjct: 58 LEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIV 117
Query: 653 WKIPYQLVELNTLAVFSVAYNNL 675
+ Y +L L V N+L
Sbjct: 118 ILLDYMFQDLYNLKSLEVGDNDL 140
Score = 30.4 bits (67), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 32/64 (50%)
Query: 589 VPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSY 648
+P+ LDL NR+ + + ++ L L+ N ++ P F+NL N+ +L L
Sbjct: 30 IPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRS 89
Query: 649 NKLS 652
N+L
Sbjct: 90 NRLK 93
Score = 29.3 bits (64), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 47/95 (49%), Gaps = 9/95 (9%)
Query: 589 VPSLLSGLDLS------CNRLIGHIPP-QIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNI 641
P+ L GL+L+ CN + +P + +L ++ LNLS+N ++ S L +
Sbjct: 217 TPNCLYGLNLTSLSITHCN--LTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRL 274
Query: 642 ESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLS 676
+ + L +L+ PY LN L V +V+ N L+
Sbjct: 275 QEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLT 309
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 33.9 bits (76), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 39/79 (49%), Gaps = 1/79 (1%)
Query: 573 SFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIP 632
S D ++K +T +P+ LDL N+L LTK++ L L+ N L
Sbjct: 20 SVDCSSKKLT-AIPSNIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPA 78
Query: 633 STFSNLRNIESLDLSYNKL 651
F L+N+E+L ++ NKL
Sbjct: 79 GIFKELKNLETLWVTDNKL 97
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 47/92 (51%), Gaps = 4/92 (4%)
Query: 414 FCQLRILQILDISDNNISGSLPSC--YDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMIL 471
F +L L++L ++DN + +LP+ + +E + ++ N L L G F + L L
Sbjct: 57 FHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNKLQA-LPIGVFDQLVNLAEL 114
Query: 472 DLSYNHLNGNIPDRVDGLSQLSYLILAHNNLE 503
L N L P D L++L+YL L +N L+
Sbjct: 115 RLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQ 146
Score = 30.8 bits (68), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 50/96 (52%), Gaps = 11/96 (11%)
Query: 593 LSGLDLSCNRLIGHIPPQI-GNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKL 651
L+ L L N+L +PP++ +LTK+ L+L +N L F L +++ L L N+L
Sbjct: 111 LAELRLDRNQL-KSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQL 169
Query: 652 SWKIPY----QLVELNTLAVFSVAYNNLSGKIPERA 683
++P +L EL TL + NN ++PE A
Sbjct: 170 K-RVPEGAFDKLTELKTLKL----DNNQLKRVPEGA 200
>pdb|4ECO|A Chain A, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
pdb|4ECO|B Chain B, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
Length = 636
Score = 33.9 bits (76), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 40/77 (51%), Gaps = 6/77 (7%)
Query: 616 KIQTLNLSHNNLAG-PIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNN 674
KIQ + + +NNL P+ ++ + + L+ YN+L K+P E+ LA ++AYN
Sbjct: 306 KIQIIYIGYNNLKTFPVETSLQKXKKLGXLECLYNQLEGKLPAFGSEI-KLASLNLAYN- 363
Query: 675 LSGKIPERAAQFATFNE 691
+I E A F F E
Sbjct: 364 ---QITEIPANFCGFTE 377
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 33.5 bits (75), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 36/90 (40%)
Query: 612 GNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVA 671
G L + L L N L G P+ F +I+ L L NK+ + L+ L ++
Sbjct: 51 GRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLY 110
Query: 672 YNNLSGKIPERAAQFATFNESSYEGNPFLC 701
N +S +P + + NPF C
Sbjct: 111 DNQISCVMPGSFEHLNSLTSLNLASNPFNC 140
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 33.5 bits (75), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 33/59 (55%)
Query: 593 LSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKL 651
L L+LS NRL P LT ++ L L H +A + F +L+++E L+LS+N L
Sbjct: 180 LEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEELNLSHNNL 238
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 44/164 (26%), Positives = 68/164 (41%), Gaps = 25/164 (15%)
Query: 351 LQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRW------------LGNLTVLRH 398
L+L N Q+ S L+ L+L NN + IP + LG L L +
Sbjct: 88 LELFDNRLTTVPTQAFEYLSKLRELWLRNNPIES-IPSYAFNRVPSLRRLDLGELKRLEY 146
Query: 399 IIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLK 458
I + EG + L + L + + DI P+ V +E++ LS N L ++
Sbjct: 147 I--SEAAFEGLVNLRYLNLGMCNLKDI---------PNLTALVRLEELELSGNRL-DLIR 194
Query: 459 EGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNL 502
G+F +L L L + + + D L L L L+HNNL
Sbjct: 195 PGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEELNLSHNNL 238
>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
pdb|2Z80|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 353
Score = 33.5 bits (75), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 32/60 (53%)
Query: 593 LSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLS 652
+ LDLS NR+ + +Q L L+ N + +FS+L ++E LDLSYN LS
Sbjct: 54 VKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLS 113
>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 33.1 bits (74), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 32/60 (53%)
Query: 593 LSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLS 652
+ LDLS NR+ + +Q L L+ N + +FS+L ++E LDLSYN LS
Sbjct: 28 VKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLS 87
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 33.1 bits (74), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 37/67 (55%), Gaps = 1/67 (1%)
Query: 593 LSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLS 652
L L+LS NRL P LT ++ L L H +A + F +L+++E L+LS+N L
Sbjct: 180 LEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEELNLSHNNLM 239
Query: 653 WKIPYQL 659
+P+ L
Sbjct: 240 -SLPHDL 245
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 44/164 (26%), Positives = 68/164 (41%), Gaps = 25/164 (15%)
Query: 351 LQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRW------------LGNLTVLRH 398
L+L N Q+ S L+ L+L NN + IP + LG L L +
Sbjct: 88 LELFDNRLTTVPTQAFEYLSKLRELWLRNNPIES-IPSYAFNRVPSLRRLDLGELKRLEY 146
Query: 399 IIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLK 458
I + EG + L + L + + DI P+ V +E++ LS N L ++
Sbjct: 147 I--SEAAFEGLVNLRYLNLGMCNLKDI---------PNLTALVRLEELELSGNRL-DLIR 194
Query: 459 EGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNL 502
G+F +L L L + + + D L L L L+HNNL
Sbjct: 195 PGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEELNLSHNNL 238
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 33.1 bits (74), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 49/166 (29%), Positives = 76/166 (45%), Gaps = 14/166 (8%)
Query: 344 NLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPK 403
NLT L L + N V +I L+K ++L+ L +NN +S P LG LT L + +
Sbjct: 171 NLTTLERLDISSNK-VSDI-SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNG 226
Query: 404 NHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFF 463
N ++ L L L LD+++N IS P + ++ L N Q+ +
Sbjct: 227 NQLKDIGTL--ASLTNLTDLDLANNQISNLAP-LSGLTKLTELKLGAN----QISNISPL 279
Query: 464 NCLTLMI-LDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPI 508
LT + L+L+ N L P + L L+YL L NN+ P+
Sbjct: 280 AGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISPV 323
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 33.1 bits (74), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 49/166 (29%), Positives = 76/166 (45%), Gaps = 14/166 (8%)
Query: 344 NLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPK 403
NLT L L + N V +I L+K ++L+ L +NN +S P LG LT L + +
Sbjct: 171 NLTTLERLDISSNK-VSDI-SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNG 226
Query: 404 NHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFF 463
N ++ L L L LD+++N IS P + ++ L N Q+ +
Sbjct: 227 NQLKDIGTL--ASLTNLTDLDLANNQISNLAP-LSGLTKLTELKLGAN----QISNISPL 279
Query: 464 NCLTLMI-LDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPI 508
LT + L+L+ N L P + L L+YL L NN+ P+
Sbjct: 280 AGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISPV 323
Score = 30.0 bits (66), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 33/60 (55%), Gaps = 4/60 (6%)
Query: 593 LSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLS 652
L+ L+LS N I I G LT +Q LN S N + P +NL +E LD+S NK+S
Sbjct: 131 LNRLELSSNT-ISDISALSG-LTSLQQLNFSSNQVTDLKP--LANLTTLERLDISSNKVS 186
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 33.1 bits (74), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 49/166 (29%), Positives = 76/166 (45%), Gaps = 14/166 (8%)
Query: 344 NLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPK 403
NLT L L + N V +I L+K ++L+ L +NN +S P LG LT L + +
Sbjct: 171 NLTTLERLDISSNK-VSDI-SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNG 226
Query: 404 NHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFF 463
N ++ L L L LD+++N IS P + ++ L N Q+ +
Sbjct: 227 NQLKDIGTL--ASLTNLTDLDLANNQISNLAP-LSGLTKLTELKLGAN----QISNISPL 279
Query: 464 NCLTLMI-LDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPI 508
LT + L+L+ N L P + L L+YL L NN+ P+
Sbjct: 280 AGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISPV 323
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 33.1 bits (74), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 49/166 (29%), Positives = 76/166 (45%), Gaps = 14/166 (8%)
Query: 344 NLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPK 403
NLT L L + N V +I L+K ++L+ L +NN +S P LG LT L + +
Sbjct: 170 NLTTLERLDISSNK-VSDI-SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNG 225
Query: 404 NHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFF 463
N ++ L L L LD+++N IS P + ++ L N Q+ +
Sbjct: 226 NQLKDIGTL--ASLTNLTDLDLANNQISNLAP-LSGLTKLTELKLGAN----QISNISPL 278
Query: 464 NCLTLMI-LDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPI 508
LT + L+L+ N L P + L L+YL L NN+ P+
Sbjct: 279 AGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISPV 322
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 33.1 bits (74), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 49/166 (29%), Positives = 76/166 (45%), Gaps = 14/166 (8%)
Query: 344 NLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPK 403
NLT L L + N V +I L+K ++L+ L +NN +S P LG LT L + +
Sbjct: 170 NLTTLERLDISSNK-VSDI-SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNG 225
Query: 404 NHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFF 463
N ++ L L L LD+++N IS P + ++ L N Q+ +
Sbjct: 226 NQLKDIGTL--ASLTNLTDLDLANNQISNLAP-LSGLTKLTELKLGAN----QISNISPL 278
Query: 464 NCLTLMI-LDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPI 508
LT + L+L+ N L P + L L+YL L NN+ P+
Sbjct: 279 AGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISPV 322
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 32.7 bits (73), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 55/193 (28%), Positives = 90/193 (46%), Gaps = 41/193 (21%)
Query: 345 LTNLIWLQLEGNHFVGEIPQSLSKCS----SLQGLFLSNNSL-----SGKIPRWLGNLTV 395
L +L +L L N V E ++ S C SLQ L LS N L +G+I L NLT
Sbjct: 333 LKSLEFLDLSENLMVEEYLKN-SACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTS 391
Query: 396 L---RHIIMPK-NHIEGPIPLEF-------------CQLRILQILDISDNNI---SGSLP 435
L R+ P + + P + F C + L++LD+S+NN+ S LP
Sbjct: 392 LDISRNTFHPMPDSCQWPEKMRFLNLSSTGIRVVKTCIPQTLEVLDVSNNNLDSFSLFLP 451
Query: 436 SCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRV-DGLSQLSY 494
++++++S+N L L + + F L+++ +S N L ++PD + D L+ L
Sbjct: 452 R------LQELYISRNKLK-TLPDASLFP--VLLVMKISRNQLK-SVPDGIFDRLTSLQK 501
Query: 495 LILAHNNLEGEVP 507
+ L N + P
Sbjct: 502 IWLHTNPWDCSCP 514
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 32.7 bits (73), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 49/166 (29%), Positives = 76/166 (45%), Gaps = 14/166 (8%)
Query: 344 NLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPK 403
NLT L L + N V +I L+K ++L+ L +NN +S P LG LT L + +
Sbjct: 175 NLTTLERLDISSNK-VSDI-SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNG 230
Query: 404 NHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFF 463
N ++ L L L LD+++N IS P + ++ L N Q+ +
Sbjct: 231 NQLKDIGTL--ASLTNLTDLDLANNQISNLAP-LSGLTKLTELKLGAN----QISNISPL 283
Query: 464 NCLTLMI-LDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPI 508
LT + L+L+ N L P + L L+YL L NN+ P+
Sbjct: 284 AGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISPV 327
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 32.7 bits (73), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 49/166 (29%), Positives = 76/166 (45%), Gaps = 14/166 (8%)
Query: 344 NLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPK 403
NLT L L + N V +I L+K ++L+ L +NN +S P LG LT L + +
Sbjct: 174 NLTTLERLDISSNK-VSDI-SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNG 229
Query: 404 NHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFF 463
N ++ L L L LD+++N IS P + ++ L N Q+ +
Sbjct: 230 NQLKDIGTL--ASLTNLTDLDLANNQISNLAP-LSGLTKLTELKLGAN----QISNISPL 282
Query: 464 NCLTLMI-LDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPI 508
LT + L+L+ N L P + L L+YL L NN+ P+
Sbjct: 283 AGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISPV 326
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 32.7 bits (73), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 44/90 (48%), Gaps = 4/90 (4%)
Query: 600 CNRL-IGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQ 658
C+ L + HIP + + I LNL+HN L P+ F+ + LD +N +S P
Sbjct: 11 CSHLKLTHIPDDLP--SNITVLNLTHNQLRRLPPTNFTRYSQLAILDAGFNSISKLEPEL 68
Query: 659 LVELNTLAVFSVAYNNLSGKIPERAAQFAT 688
L L V ++ +N LS +I ++ F T
Sbjct: 69 CQILPLLKVLNLQHNELS-QISDQTFVFCT 97
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 49/115 (42%), Gaps = 5/115 (4%)
Query: 391 GNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPS-CYDFVCIEQVHLS 449
N+TVL + N + P F + L ILD N+IS P C ++ ++L
Sbjct: 25 SNITVLN---LTHNQLRRLPPTNFTRYSQLAILDAGFNSISKLEPELCQILPLLKVLNLQ 81
Query: 450 KNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEG 504
N L Q+ + TF C L LDL N ++ + L L L+HN L
Sbjct: 82 HNEL-SQISDQTFVFCTNLTELDLMSNSIHKIKSNPFKNQKNLIKLDLSHNGLSS 135
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 60/136 (44%), Gaps = 7/136 (5%)
Query: 370 SSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFC---QLRILQILDIS 426
SSL+ L LS+N L P + L +++ + + + C +Q L ++
Sbjct: 171 SSLRKLDLSSNPLKEFSPGCFQTIGKLFALLLNNAQLNPHLTEKLCWELSNTSIQNLSLA 230
Query: 427 DNNISGSLPSCY---DFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIP 483
+N + + S + + + Q+ LS N LH + G+F +L L L YN++ P
Sbjct: 231 NNQLLATSESTFSGLKWTNLTQLDLSYNNLH-DVGNGSFSYLPSLRYLSLEYNNIQRLSP 289
Query: 484 DRVDGLSQLSYLILAH 499
GLS L YL L
Sbjct: 290 RSFYGLSNLRYLSLKR 305
Score = 29.6 bits (65), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 100/461 (21%), Positives = 164/461 (35%), Gaps = 40/461 (8%)
Query: 273 SRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPE----HLAMGCVXXXXXX 328
S L ++S N L P F + L L L+N QL + E L+ +
Sbjct: 171 SSLRKLDLSSNPLKEFSPGCFQTIGKLFALLLNNAQLNPHLTEKLCWELSNTSIQNLSLA 230
Query: 329 XXXXXXEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPR 388
TNL L L N+ S S SL+ L L N++ PR
Sbjct: 231 NNQLLATSESTFSGLKWTNLTQLDLSYNNLHDVGNGSFSYLPSLRYLSLEYNNIQRLSPR 290
Query: 389 WLGNLTVLRHIIMPKNHIEGPIPL---------EFCQLRILQILDISDNNISGSLPSCYD 439
L+ LR++ + + + + L F L+ L+ L++ DNNI + + +
Sbjct: 291 SFYGLSNLRYLSLKRAFTKQSVSLASHPNIDDFSFQWLKYLEYLNMDDNNIPSTKSNTFT 350
Query: 440 -FVCIEQVHLSKNMLHGQLKEGTFFNCLT---LMILDLSYNHLNGNIPDRVDGLSQLSYL 495
V ++ + LSK Q F L L+ L+L+ NH++ L QL L
Sbjct: 351 GLVSLKYLSLSKTFTSLQTLTNETFVSLAHSPLLTLNLTKNHISKIANGTFSWLGQLRIL 410
Query: 496 ILAHNNLEGEVPIXXXXXXXXXXXXXXXXXXHGHIPSCFDNTTLHERYNNGSSLQPFETS 555
L N +E ++ + + + + SLQ
Sbjct: 411 DLGLNEIEQKLSGQEWRGLRNIFEIYLSYNKYLQLST--------SSFALVPSLQRLMLR 462
Query: 556 FVIMGGMDVDPKK----QILESFDFTTKSITYTYQGRVPSL--LSGLDLSCN---RLIGH 606
V + +D+ P + L D + +I + + L L LD N RL
Sbjct: 463 RVALKNVDISPSPFRPLRNLTILDLSNNNIANINEDLLEGLENLEILDFQHNNLARLWKR 522
Query: 607 IPPQ-----IGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVE 661
P + L+ + LNL N L F NL ++S++L N L+ P+ +
Sbjct: 523 ANPGGPVNFLKGLSHLHILNLESNGLDEIPVGVFKNLFELKSINLGLNNLNKLEPFIFDD 582
Query: 662 LNTLAVFSVAYNNLSGKIPER-AAQFATFNESSYEGNPFLC 701
+L ++ N ++ + F N NPF C
Sbjct: 583 QTSLRSLNLQKNLITSVEKDVFGPPFQNLNSLDMRFNPFDC 623
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 46/162 (28%), Positives = 66/162 (40%), Gaps = 5/162 (3%)
Query: 345 LTNLIWLQLEGN--HFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMP 402
LT L L L N F G QS +SL+ L LS N + +LG L L H+
Sbjct: 51 LTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLG-LEQLEHLDFQ 109
Query: 403 KNHIEGPIPLE-FCQLRILQILDISDNNISGSLPSCYD-FVCIEQVHLSKNMLHGQLKEG 460
++++ F LR L LDIS + + ++ +E + ++ N
Sbjct: 110 HSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPD 169
Query: 461 TFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNL 502
F L LDLS L P + LS L L ++HNN
Sbjct: 170 IFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNF 211
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Query: 614 LTKIQTLNLSHNNLAGP-IPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAY 672
L+ ++ L ++ N+ +P F+ LRN+ LDLS +L P L++L V ++++
Sbjct: 149 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSH 208
Query: 673 NNL 675
NN
Sbjct: 209 NNF 211
Score = 30.8 bits (68), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 42/85 (49%), Gaps = 1/85 (1%)
Query: 593 LSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLS 652
L+ LDLS +L P +L+ +Q LN+SHNN + L +++ LD S N +
Sbjct: 177 LTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIM 236
Query: 653 WKIPYQLVEL-NTLAVFSVAYNNLS 676
+L ++LA ++ N+ +
Sbjct: 237 TSKKQELQHFPSSLAFLNLTQNDFA 261
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/95 (23%), Positives = 44/95 (46%)
Query: 583 YTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIE 642
+T++G S + DLS +++ + + T ++ L L+ N + + F L ++
Sbjct: 267 FTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLL 326
Query: 643 SLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSG 677
L+LS N L L+ L V ++YN++
Sbjct: 327 KLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRA 361
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Query: 445 QVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLE 503
+++LS+N L G + F N L +LDLSYNH+ GL L L L N L+
Sbjct: 327 KLNLSQNFL-GSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLK 384
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 54/194 (27%), Positives = 91/194 (46%), Gaps = 41/194 (21%)
Query: 344 NLTNLIWLQLEGNHFVGEIPQSLSKCS----SLQGLFLSNNSL-----SGKIPRWLGNLT 394
+L +L +L L N V E ++ S C SLQ L LS N L +G+I L NLT
Sbjct: 358 HLKSLEFLDLSENLMVEEYLKN-SACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLT 416
Query: 395 VL---RHIIMPK-NHIEGPIPLEF-------------CQLRILQILDISDNNI---SGSL 434
L R+ P + + P + F C + L++LD+S+NN+ S L
Sbjct: 417 SLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIRVVKTCIPQTLEVLDVSNNNLDSFSLFL 476
Query: 435 PSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRV-DGLSQLS 493
P ++++++S+N L L + + F L+++ ++ N L ++PD + D L+ L
Sbjct: 477 PR------LQELYISRNKLK-TLPDASLFP--VLLVMKIASNQLK-SVPDGIFDRLTSLQ 526
Query: 494 YLILAHNNLEGEVP 507
+ L N + P
Sbjct: 527 KIWLHTNPWDCSCP 540
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 49/107 (45%), Gaps = 4/107 (3%)
Query: 592 LLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKL 651
L LDLS N I +I I + L L+ N+L +P+ NL N+ LDLS+N+L
Sbjct: 225 LWHALDLS-NLQIFNISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRL 282
Query: 652 SWKIPYQLVELNTLAVFSVAYNNLSGKIPERAAQFATFNESSYEGNP 698
+ +P +L L F ++N+ +P EGNP
Sbjct: 283 T-SLPAELGSCFQLKYFYF-FDNMVTTLPWEFGNLCNLQFLGVEGNP 327
Score = 30.8 bits (68), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 41/86 (47%), Gaps = 3/86 (3%)
Query: 343 FNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMP 402
F L L L GN E+P + S+L+ L LS+N L+ +P LG+ L++
Sbjct: 244 FKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLTS-LPAELGSCFQLKYFYFF 301
Query: 403 KNHIEGPIPLEFCQLRILQILDISDN 428
N + +P EF L LQ L + N
Sbjct: 302 DNMVTT-LPWEFGNLCNLQFLGVEGN 326
Score = 29.6 bits (65), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 59/122 (48%), Gaps = 20/122 (16%)
Query: 197 NQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDSLVGPFRLPIHSHKQLRLLDVS 256
NQ L++ +LS ++E+ +EN + + S +D L L L++ ++S
Sbjct: 189 NQALLQHKKLSQYSIDEDDD---IENRMVMPKDSKYDDQLWHALDL-----SNLQIFNIS 240
Query: 257 KNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEH 316
N F+ D L+RL + S+ L P+ N++ L+ LDLS+N+LT +P
Sbjct: 241 ANIFKY-------DFLTRLYLNGNSLTEL----PAEIKNLSNLRVLDLSHNRLTS-LPAE 288
Query: 317 LA 318
L
Sbjct: 289 LG 290
Score = 29.6 bits (65), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 33/64 (51%), Gaps = 3/64 (4%)
Query: 250 LRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQL 309
LR+LD+S N +P E+G +L F N + ++P FGN+ LQFL + N L
Sbjct: 272 LRVLDLSHNRLTS-LPAELGSCF-QLKYFYFFDNMV-TTLPWEFGNLCNLQFLGVEGNPL 328
Query: 310 TGEI 313
+
Sbjct: 329 EKQF 332
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 32.0 bits (71), Expect = 1.3, Method: Composition-based stats.
Identities = 20/64 (31%), Positives = 35/64 (54%), Gaps = 5/64 (7%)
Query: 614 LTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPY----QLVELNTLAVFS 669
LTK++ L L+ N L F L N+++L LS N+L +P+ +L +L T+ +F
Sbjct: 130 LTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQ-SVPHGAFDRLGKLQTITLFG 188
Query: 670 VAYN 673
++
Sbjct: 189 NQFD 192
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 41/94 (43%), Gaps = 1/94 (1%)
Query: 610 QIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQ-LVELNTLAVF 668
Q+ NL +Q LNLS+N G F +E LD+++ L K P+ L+ L V
Sbjct: 370 QLKNLRHLQYLNLSYNEPLGLEDQAFKECPQLELLDVAFTHLHVKAPHSPFQNLHLLRVL 429
Query: 669 SVAYNNLSGKIPERAAQFATFNESSYEGNPFLCG 702
++++ L A + +GN F G
Sbjct: 430 NLSHCLLDTSNQHLLAGLQDLRHLNLQGNSFQDG 463
>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
Length = 285
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 43/97 (44%), Gaps = 15/97 (15%)
Query: 611 IGNLTKIQTLNLSHNNLAGPIPS-TFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFS 669
+GNLT + H N +P F L +++ L L N+++ P+ +L L
Sbjct: 151 LGNLTHL----FLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLY 206
Query: 670 VAYNNLS-----GKIPERAAQFATFNESSYEGNPFLC 701
+ NNLS P RA Q+ N+ NP++C
Sbjct: 207 LFANNLSALPTEALAPLRALQYLRLND-----NPWVC 238
Score = 30.8 bits (68), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 68/176 (38%), Gaps = 5/176 (2%)
Query: 263 HIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNN-QLTGEIPEHL-AMG 320
H+P LT+ + N L ++F + L+ LDLS+N QL P +G
Sbjct: 45 HVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLG 104
Query: 321 CVXXXXXXXXXXXXEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNN 380
+ G R L L +L L+ N + +L LFL N
Sbjct: 105 RLHTLHLDRCGLQELGPGLFR--GLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGN 162
Query: 381 SLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPS 436
+S R L L +++ +N + P F L L L + NN+S +LP+
Sbjct: 163 RISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLS-ALPT 217
>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding
Domain Reveals A Convergent Recognition Scaffold
Mediating Inhibition Of Myelination
Length = 285
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 43/97 (44%), Gaps = 15/97 (15%)
Query: 611 IGNLTKIQTLNLSHNNLAGPIPS-TFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFS 669
+GNLT + H N +P F L +++ L L N+++ P+ +L L
Sbjct: 152 LGNLTHL----FLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLY 207
Query: 670 VAYNNLS-----GKIPERAAQFATFNESSYEGNPFLC 701
+ NNLS P RA Q+ N+ NP++C
Sbjct: 208 LFANNLSALPTEALAPLRALQYLRLND-----NPWVC 239
Score = 30.4 bits (67), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 68/176 (38%), Gaps = 5/176 (2%)
Query: 263 HIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNN-QLTGEIPEHL-AMG 320
H+P LT+ + N L ++F + L+ LDLS+N QL P +G
Sbjct: 46 HVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLG 105
Query: 321 CVXXXXXXXXXXXXEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNN 380
+ G R L L +L L+ N + +L LFL N
Sbjct: 106 RLHTLHLDRCGLQELGPGLFR--GLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGN 163
Query: 381 SLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPS 436
+S R L L +++ +N + P F L L L + NN+S +LP+
Sbjct: 164 RISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLS-ALPT 218
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 41/92 (44%), Gaps = 5/92 (5%)
Query: 584 TYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIES 643
T+ G S + LDLS + L ++ LNL++N + F L N++
Sbjct: 259 TFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQV 318
Query: 644 LDLSYNKLSWKIPYQLVELNTLAVFSVAYNNL 675
L+LSYN L +L N + VAY +L
Sbjct: 319 LNLSYNLLG-----ELYSSNFYGLPKVAYIDL 345
Score = 31.2 bits (69), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 72/284 (25%), Positives = 113/284 (39%), Gaps = 72/284 (25%)
Query: 246 SHKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLS 305
+ +R LD+S + F + + + L L V N++ N ++ +F ++ LQ L+LS
Sbjct: 264 ARSSVRHLDLS-HGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLS 322
Query: 306 NNQLTGEIPEHLAMGCVXXXXXXXXXXXXEGHMFSRNF-NLTNLIWLQLEGNHFVGEIPQ 364
N L G ++S NF L + ++ L+ NH Q
Sbjct: 323 YNLL--------------------------GELYSSNFYGLPKVAYIDLQKNHIAIIQDQ 356
Query: 365 SLSKCSSLQGLFLSNNSL--------------SGKIPRWLGNLTVLRHII-MPKNHIEGP 409
+ LQ L L +N+L SG L + + ++I + +N +E
Sbjct: 357 TFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENL 416
Query: 410 IPLEFCQLRI--LQILDISDNNISG----SLPSCYDFVCIEQVHLSKNMLHGQLKEGTFF 463
L F LR+ LQIL ++ N S PS + +EQ+ L +NML QL T
Sbjct: 417 DILYFL-LRVPHLQILILNQNRFSSCSGDQTPS--ENPSLEQLFLGENML--QLAWET-- 469
Query: 464 NCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVP 507
+L + D +GLS L L L HN L P
Sbjct: 470 --------ELCW--------DVFEGLSHLQVLYLNHNYLNSLPP 497
>pdb|4FMZ|A Chain A, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
pdb|4FMZ|B Chain B, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
Length = 347
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 25/47 (53%)
Query: 366 LSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPL 412
L+ S L LFL+NN L + +G LT L + + +NHI PL
Sbjct: 283 LNNLSQLNSLFLNNNQLGNEDXEVIGGLTNLTTLFLSQNHITDIRPL 329
Score = 29.3 bits (64), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 33/68 (48%), Gaps = 4/68 (5%)
Query: 345 LTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKN 404
LTNL +L L GN P LS L L++ N ++ L NLT LR + + ++
Sbjct: 65 LTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITD--ISALQNLTNLRELYLNED 120
Query: 405 HIEGPIPL 412
+I PL
Sbjct: 121 NISDISPL 128
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 47/165 (28%), Positives = 65/165 (39%), Gaps = 26/165 (15%)
Query: 337 HMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVL 396
H S LTNL +L L GN K ++L+ L L N L LT L
Sbjct: 76 HDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNL 135
Query: 397 RHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQ 456
++ + N ++ F +L L LD+ DNN SLP
Sbjct: 136 TYLYLYHNQLQSLPKGVFDKLTNLTRLDL-DNNQLQSLP--------------------- 173
Query: 457 LKEGTFFNCLTLMILDLSYNHLNGNIPDRV-DGLSQLSYLILAHN 500
EG F L L L+ N L +PD V D L+ L+++ L +N
Sbjct: 174 --EGVFDKLTQLKQLSLNDNQLKS-VPDGVFDRLTSLTHIWLLNN 215
>pdb|2MYS|B Chain B, Myosin Subfragment-1, Alpha Carbon Coordinates Only For
The Two Light Chains
pdb|1I84|U Chain U, Cryo-Em Structure Of The Heavy Meromyosin Subfragment Of
Chicken Gizzard Smooth Muscle Myosin With Regulatory
Light Chain In The Dephosphorylated State. Only C Alphas
Provided For Regulatory Light Chain. Only Backbone Atoms
Provided For S2 Fragment.
pdb|1I84|Z Chain Z, Cryo-Em Structure Of The Heavy Meromyosin Subfragment Of
Chicken Gizzard Smooth Muscle Myosin With Regulatory
Light Chain In The Dephosphorylated State. Only C Alphas
Provided For Regulatory Light Chain. Only Backbone Atoms
Provided For S2 Fragment
Length = 166
Score = 31.2 bits (69), Expect = 2.2, Method: Composition-based stats.
Identities = 15/43 (34%), Positives = 21/43 (48%)
Query: 278 FNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMG 320
N+ LD I + G +NF FL + +L G PE + MG
Sbjct: 57 LNVKNEELDAMIKEASGPINFTVFLTMFGEKLKGADPEDVIMG 99
>pdb|2W4A|B Chain B, Isometrically Contracting Insect Asynchronous Flight
Muscle
pdb|2W4G|B Chain B, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Quick Stretch Step
pdb|2W4H|B Chain B, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Quick Release Step
Length = 150
Score = 31.2 bits (69), Expect = 2.2, Method: Composition-based stats.
Identities = 15/43 (34%), Positives = 21/43 (48%)
Query: 278 FNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMG 320
N+ LD I + G +NF FL + +L G PE + MG
Sbjct: 44 LNVKNEELDAMIKEASGPINFTVFLTMFGEKLKGADPEDVIMG 86
>pdb|1M8Q|B Chain B, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1M8Q|E Chain E, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1M8Q|H Chain H, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1M8Q|Q Chain Q, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1MVW|B Chain B, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1MVW|E Chain E, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1MVW|H Chain H, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1MVW|K Chain K, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1MVW|N Chain N, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1MVW|Q Chain Q, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O18|E Chain E, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O18|H Chain H, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O18|K Chain K, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O18|N Chain N, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O18|Q Chain Q, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O19|B Chain B, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O19|E Chain E, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O19|H Chain H, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O19|K Chain K, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O19|N Chain N, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O19|T Chain T, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1A|B Chain B, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1A|E Chain E, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1A|H Chain H, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1A|K Chain K, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1A|N Chain N, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1A|Q Chain Q, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1B|B Chain B, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1B|E Chain E, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1B|H Chain H, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1B|K Chain K, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1C|B Chain B, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1C|E Chain E, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1C|H Chain H, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1C|K Chain K, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1C|Q Chain Q, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1D|B Chain B, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1D|E Chain E, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1D|H Chain H, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1D|K Chain K, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1D|N Chain N, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1D|Q Chain Q, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1E|B Chain B, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1E|E Chain E, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1E|H Chain H, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1E|K Chain K, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1E|N Chain N, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1E|Q Chain Q, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1F|B Chain B, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1F|E Chain E, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1F|H Chain H, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1F|K Chain K, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1G|B Chain B, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1G|E Chain E, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1G|H Chain H, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1G|K Chain K, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1G|N Chain N, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1G|Q Chain Q, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
Length = 145
Score = 31.2 bits (69), Expect = 2.2, Method: Composition-based stats.
Identities = 15/43 (34%), Positives = 21/43 (48%)
Query: 278 FNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMG 320
N+ LD I + G +NF FL + +L G PE + MG
Sbjct: 39 LNVKNEELDAMIKEASGPINFTVFLTMFGEKLKGADPEDVIMG 81
>pdb|2XOT|A Chain A, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
pdb|2XOT|B Chain B, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
Length = 361
Score = 30.8 bits (68), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 42/89 (47%), Gaps = 6/89 (6%)
Query: 589 VPSLLSGLDLSCN---RLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLD 645
+PS + LDLS N RL P LT + +L LSHN+L F + N+ LD
Sbjct: 37 LPSYTALLDLSHNNLSRLRAEWTP--TRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLD 94
Query: 646 LSYNKLSWKIPYQLVELNTLAVFSVAYNN 674
LS N L + +L L V + YNN
Sbjct: 95 LSSNHLHTLDEFLFSDLQALEVL-LLYNN 122
>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4
pdb|2Y1L|F Chain F, Caspase-8 In Complex With Darpin-8.4
Length = 169
Score = 30.8 bits (68), Expect = 3.4, Method: Composition-based stats.
Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
Query: 254 DVSKNNFQGHIPLEIGDILSRLTVFNISM-NALDGSIPSSFGNMNFLQFLDLSNNQLTGE 312
DV+ N+ +GH PL + + L + + + N D + FG F +D N L E
Sbjct: 105 DVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDL-AE 163
Query: 313 IPEHL 317
I + L
Sbjct: 164 ILQKL 168
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 41/159 (25%), Positives = 63/159 (39%), Gaps = 4/159 (2%)
Query: 275 LTVFNISMNALDGSIPSSFGNMNFLQFLDLSNN-QLTGEIPEHL-AMGCVXXXXXXXXXX 332
LT+ + NAL G ++F + L+ LDLS+N QL P +G +
Sbjct: 57 LTILWLHSNALAGIDAAAFTGLTLLEQLDLSDNAQLRVVDPTTFRGLGHLHTLHLDRCGL 116
Query: 333 XXEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGN 392
G R L L +L L+ N+ + +L LFL N +
Sbjct: 117 QELGPGLFRG--LAALQYLYLQDNNLQALPDNTFRDLGNLTHLFLHGNRIPSVPEHAFRG 174
Query: 393 LTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNIS 431
L L +++ +NH+ P F L L L + NN+S
Sbjct: 175 LHSLDRLLLHQNHVARVHPHAFRDLGRLMTLYLFANNLS 213
Score = 29.3 bits (64), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 43/109 (39%), Gaps = 1/109 (0%)
Query: 397 RHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCY-DFVCIEQVHLSKNMLHG 455
+ I + N I F R L IL + N ++G + + +EQ+ LS N
Sbjct: 34 QRIFLHGNRISYVPAASFQSCRNLTILWLHSNALAGIDAAAFTGLTLLEQLDLSDNAQLR 93
Query: 456 QLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEG 504
+ TF L L L L P GL+ L YL L NNL+
Sbjct: 94 VVDPTTFRGLGHLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNNLQA 142
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 30.4 bits (67), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 35/64 (54%), Gaps = 5/64 (7%)
Query: 614 LTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPY----QLVELNTLAVFS 669
LTK++ L L+ N L F L N+++L LS N+L +P+ +L +L T+ +F
Sbjct: 130 LTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQ-SVPHGAFDRLGKLQTITLFG 188
Query: 670 VAYN 673
++
Sbjct: 189 NQFD 192
>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2
Length = 452
Score = 30.4 bits (67), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 65/145 (44%), Gaps = 25/145 (17%)
Query: 370 SSLQGLFLSNNSLSGKIPRW------------LGNLTVLRHIIMPKNHIEGPIPLEFCQL 417
S L+ L+L NN + IP + LG L L +I + EG L++ L
Sbjct: 147 SKLRELWLRNNPIE-SIPSYAFNRVPSLMRLDLGELKKLEYI--SEGAFEGLFNLKYLNL 203
Query: 418 RILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNH 477
+ I D +P+ V +E++ +S N +++ G+F +L L + +
Sbjct: 204 GMCNIKD---------MPNLTPLVGLEELEMSGNHF-PEIRPGSFHGLSSLKKLWVMNSQ 253
Query: 478 LNGNIPDRVDGLSQLSYLILAHNNL 502
++ + DGL+ L L LAHNNL
Sbjct: 254 VSLIERNAFDGLASLVELNLAHNNL 278
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 30.4 bits (67), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 37/67 (55%), Gaps = 5/67 (7%)
Query: 610 QIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWK---IPYQLVELNTLA 666
Q+ NL+ +Q+LNLS+N F +E LDL++ +L K P+Q L+ L
Sbjct: 371 QLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQ--NLHLLK 428
Query: 667 VFSVAYN 673
V +++++
Sbjct: 429 VLNLSHS 435
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 29.3 bits (64), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 62/142 (43%), Gaps = 4/142 (2%)
Query: 562 MDVDPKKQILESFDFTTKSI-TYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTL 620
+ VD +L + D + + + G+ L+ LD+S NRL + L ++Q L
Sbjct: 70 LQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQEL 129
Query: 621 NLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVE-LNTLAVFSVAYNNLSGKI 679
L N L P + +E L L+ N+L+ ++P L+ L L + N+L I
Sbjct: 130 YLKGNELKTLPPGLLTPTPKLEKLSLANNQLT-ELPAGLLNGLENLDTLLLQENSLY-TI 187
Query: 680 PERAAQFATFNESSYEGNPFLC 701
P+ + GNP+LC
Sbjct: 188 PKGFFGSHLLPFAFLHGNPWLC 209
>pdb|2R9U|A Chain A, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|B Chain B, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|C Chain C, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|D Chain D, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
Length = 174
Score = 29.3 bits (64), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 42/87 (48%), Gaps = 2/87 (2%)
Query: 421 QILDISDNNISGSLPSCYD-FVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLN 479
Q L +++N I+ P +D V ++Q++ + N L + G F L LDL+ NHL
Sbjct: 36 QRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTA-IPTGVFDKLTQLTQLDLNDNHLK 94
Query: 480 GNIPDRVDGLSQLSYLILAHNNLEGEV 506
D L L+++ L +N + E
Sbjct: 95 SIPRGAFDNLKSLTHIYLYNNPWDCEC 121
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 29.3 bits (64), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 62/142 (43%), Gaps = 4/142 (2%)
Query: 562 MDVDPKKQILESFDFTTKSI-TYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTL 620
+ VD +L + D + + + G+ L+ LD+S NRL + L ++Q L
Sbjct: 70 LQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQEL 129
Query: 621 NLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVE-LNTLAVFSVAYNNLSGKI 679
L N L P + +E L L+ N+L+ ++P L+ L L + N+L I
Sbjct: 130 YLKGNELKTLPPGLLTPTPKLEKLSLANNQLT-ELPAGLLNGLENLDTLLLQENSLY-TI 187
Query: 680 PERAAQFATFNESSYEGNPFLC 701
P+ + GNP+LC
Sbjct: 188 PKGFFGSHLLPFAFLHGNPWLC 209
>pdb|2V9S|A Chain A, Second Lrr Domain Of Human Slit2
pdb|2V9S|B Chain B, Second Lrr Domain Of Human Slit2
pdb|2V9S|C Chain C, Second Lrr Domain Of Human Slit2
pdb|2V9S|D Chain D, Second Lrr Domain Of Human Slit2
Length = 220
Score = 29.3 bits (64), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 40/74 (54%), Gaps = 3/74 (4%)
Query: 589 VPSLLSGLDLSCNRLIGHIPP-QIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLS 647
+P ++ + L N I IPP K++ ++LS+N ++ P F LR++ SL L
Sbjct: 30 LPETITEIRLEQN-TIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLY 88
Query: 648 YNKLSWKIPYQLVE 661
NK++ ++P L E
Sbjct: 89 GNKIT-ELPKSLFE 101
>pdb|2V9T|B Chain B, Complex Between The Second Lrr Domain Of Slit2 And The
First Ig Domain From Robo1
Length = 220
Score = 29.3 bits (64), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 33/59 (55%), Gaps = 2/59 (3%)
Query: 604 IGHIPP-QIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVE 661
I IPP K++ ++LS+N ++ P F LR++ SL L NK++ ++P L E
Sbjct: 44 IKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKIT-ELPKSLFE 101
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.139 0.427
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,973,415
Number of Sequences: 62578
Number of extensions: 854860
Number of successful extensions: 2248
Number of sequences better than 100.0: 81
Number of HSP's better than 100.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 31
Number of HSP's that attempted gapping in prelim test: 1525
Number of HSP's gapped (non-prelim): 498
length of query: 788
length of database: 14,973,337
effective HSP length: 107
effective length of query: 681
effective length of database: 8,277,491
effective search space: 5636971371
effective search space used: 5636971371
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)