Query 003893
Match_columns 788
No_of_seqs 649 out of 5047
Neff 10.5
Searched_HMMs 46136
Date Thu Mar 28 13:54:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003893.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003893hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 7.8E-60 1.7E-64 565.6 45.0 541 74-704 70-611 (968)
2 PLN00113 leucine-rich repeat r 100.0 9.6E-56 2.1E-60 530.3 40.5 520 96-704 68-588 (968)
3 KOG4194 Membrane glycoprotein 100.0 1.5E-41 3.3E-46 341.5 9.0 377 274-707 79-459 (873)
4 KOG4194 Membrane glycoprotein 100.0 1.5E-41 3.2E-46 341.7 2.2 387 226-698 80-469 (873)
5 KOG0472 Leucine-rich repeat pr 100.0 1.4E-38 3E-43 306.6 -12.9 480 47-676 46-541 (565)
6 KOG0472 Leucine-rich repeat pr 100.0 1.1E-38 2.5E-43 307.2 -17.3 428 191-700 106-541 (565)
7 KOG0618 Serine/threonine phosp 100.0 6.9E-35 1.5E-39 309.8 -6.0 404 67-527 15-420 (1081)
8 KOG0618 Serine/threonine phosp 100.0 2.3E-33 4.9E-38 298.3 -4.7 454 8-528 11-466 (1081)
9 KOG0444 Cytoskeletal regulator 100.0 3.6E-32 7.8E-37 276.0 -2.0 364 278-704 12-379 (1255)
10 KOG0444 Cytoskeletal regulator 100.0 2.1E-32 4.6E-37 277.6 -4.4 79 593-673 293-372 (1255)
11 KOG4237 Extracellular matrix p 99.9 1.4E-28 3.1E-33 237.5 -3.4 397 246-649 65-498 (498)
12 KOG4237 Extracellular matrix p 99.9 9E-27 2E-31 225.2 -5.1 281 253-538 51-346 (498)
13 PLN03210 Resistant to P. syrin 99.9 3.2E-22 7E-27 240.1 26.6 341 242-650 552-904 (1153)
14 PLN03210 Resistant to P. syrin 99.9 1.2E-21 2.6E-26 235.2 27.3 340 266-674 551-904 (1153)
15 PRK15387 E3 ubiquitin-protein 99.8 4.4E-20 9.6E-25 204.7 17.9 63 592-659 403-465 (788)
16 PRK15387 E3 ubiquitin-protein 99.8 4E-20 8.7E-25 205.0 16.7 145 467-685 323-467 (788)
17 PRK15370 E3 ubiquitin-protein 99.7 1E-17 2.2E-22 187.6 10.4 97 274-383 179-275 (754)
18 PRK15370 E3 ubiquitin-protein 99.7 2.3E-17 5E-22 184.7 12.4 159 250-431 180-338 (754)
19 cd00116 LRR_RI Leucine-rich re 99.7 2.3E-18 5E-23 180.3 -0.5 108 592-699 194-319 (319)
20 cd00116 LRR_RI Leucine-rich re 99.7 1.1E-17 2.3E-22 175.3 4.1 260 23-310 2-291 (319)
21 KOG0617 Ras suppressor protein 99.6 5.1E-17 1.1E-21 139.5 -3.5 87 437-527 29-115 (264)
22 KOG0617 Ras suppressor protein 99.6 7.6E-17 1.6E-21 138.5 -4.2 181 461-700 28-212 (264)
23 PLN03150 hypothetical protein; 99.5 9.4E-14 2E-18 155.7 9.9 114 592-705 419-533 (623)
24 KOG3207 Beta-tubulin folding c 99.1 1.3E-11 2.7E-16 122.8 1.5 164 71-287 119-285 (505)
25 KOG0532 Leucine-rich repeat (L 99.1 3.2E-12 6.9E-17 130.9 -3.0 156 461-677 93-248 (722)
26 KOG0532 Leucine-rich repeat (L 99.1 1.9E-12 4.1E-17 132.5 -4.6 174 466-701 75-248 (722)
27 PLN03150 hypothetical protein; 99.1 2.2E-10 4.9E-15 128.7 11.3 113 515-680 419-532 (623)
28 KOG1259 Nischarin, modulator o 99.1 2.5E-11 5.5E-16 114.4 1.5 59 466-527 284-342 (490)
29 PF14580 LRR_9: Leucine-rich r 99.1 1.1E-10 2.3E-15 106.5 5.3 132 15-155 15-148 (175)
30 KOG1909 Ran GTPase-activating 99.1 2.1E-11 4.6E-16 117.9 -0.6 92 195-286 181-283 (382)
31 PF14580 LRR_9: Leucine-rich r 99.0 1.1E-10 2.4E-15 106.5 3.8 108 45-161 18-127 (175)
32 COG4886 Leucine-rich repeat (L 99.0 2.6E-10 5.6E-15 122.8 6.8 199 398-681 97-295 (394)
33 KOG3207 Beta-tubulin folding c 99.0 4.6E-11 1E-15 118.9 -0.7 163 221-383 118-284 (505)
34 KOG1259 Nischarin, modulator o 99.0 9E-11 1.9E-15 110.7 0.7 84 592-678 330-414 (490)
35 COG4886 Leucine-rich repeat (L 99.0 1E-09 2.2E-14 118.1 7.9 60 346-407 116-176 (394)
36 KOG1909 Ran GTPase-activating 99.0 1.4E-10 3.1E-15 112.3 0.6 235 194-430 25-310 (382)
37 PF13855 LRR_8: Leucine rich r 98.9 1E-09 2.2E-14 82.0 2.4 60 592-651 2-61 (61)
38 PF13855 LRR_8: Leucine rich r 98.8 1.5E-09 3.1E-14 81.2 2.4 61 615-675 1-61 (61)
39 KOG4658 Apoptotic ATPase [Sign 98.8 3.1E-09 6.8E-14 121.8 6.1 132 17-154 543-675 (889)
40 KOG0531 Protein phosphatase 1, 98.8 6.9E-10 1.5E-14 119.4 -1.3 85 593-680 234-322 (414)
41 KOG0531 Protein phosphatase 1, 98.7 1.8E-09 3.9E-14 116.2 -1.2 263 346-700 49-318 (414)
42 KOG4658 Apoptotic ATPase [Sign 98.7 8.5E-09 1.8E-13 118.4 3.4 128 297-428 523-652 (889)
43 KOG1859 Leucine-rich repeat pr 98.6 9.1E-10 2E-14 116.3 -6.5 129 570-703 165-295 (1096)
44 KOG2120 SCF ubiquitin ligase, 98.6 1.1E-09 2.5E-14 103.5 -5.9 159 199-357 185-349 (419)
45 KOG2120 SCF ubiquitin ligase, 98.5 2.9E-09 6.3E-14 100.7 -5.8 180 98-308 186-374 (419)
46 KOG2982 Uncharacterized conser 98.3 1.8E-07 3.9E-12 88.9 0.7 224 298-521 46-286 (418)
47 KOG4341 F-box protein containi 98.2 8.5E-08 1.8E-12 95.5 -3.5 303 19-329 138-459 (483)
48 KOG4579 Leucine-rich repeat (L 98.2 8.1E-08 1.8E-12 80.4 -3.2 82 593-676 55-136 (177)
49 KOG4341 F-box protein containi 98.2 1E-07 2.2E-12 95.0 -3.5 110 47-157 139-252 (483)
50 KOG1859 Leucine-rich repeat pr 98.1 4.7E-08 1E-12 103.6 -8.6 178 265-454 102-292 (1096)
51 COG5238 RNA1 Ran GTPase-activa 98.1 1.4E-06 3E-11 81.8 1.5 88 199-286 185-285 (388)
52 KOG2982 Uncharacterized conser 98.1 9.8E-07 2.1E-11 84.0 0.4 86 71-158 69-157 (418)
53 COG5238 RNA1 Ran GTPase-activa 98.0 1.7E-06 3.6E-11 81.4 0.7 189 195-385 26-257 (388)
54 KOG3665 ZYG-1-like serine/thre 98.0 3E-06 6.4E-11 95.2 2.1 160 46-232 122-283 (699)
55 KOG1644 U2-associated snRNP A' 98.0 1.5E-05 3.2E-10 72.0 6.0 109 45-158 41-151 (233)
56 KOG4579 Leucine-rich repeat (L 97.9 1.2E-06 2.6E-11 73.5 -2.1 103 592-697 28-133 (177)
57 PRK15386 type III secretion pr 97.8 4E-05 8.7E-10 79.1 7.8 54 465-524 51-104 (426)
58 PF12799 LRR_4: Leucine Rich r 97.8 1.2E-05 2.5E-10 54.7 2.4 36 616-652 2-37 (44)
59 KOG1644 U2-associated snRNP A' 97.8 3E-05 6.4E-10 70.1 5.3 103 252-359 23-126 (233)
60 KOG3665 ZYG-1-like serine/thre 97.8 1.4E-05 3.1E-10 89.7 3.3 143 19-166 122-269 (699)
61 PF12799 LRR_4: Leucine Rich r 97.7 2.2E-05 4.8E-10 53.3 2.7 38 639-677 1-38 (44)
62 PF13306 LRR_5: Leucine rich r 97.6 9.7E-05 2.1E-09 65.3 5.8 104 312-420 25-128 (129)
63 PF13306 LRR_5: Leucine rich r 97.6 0.00011 2.3E-09 65.0 5.8 123 267-396 6-128 (129)
64 PRK15386 type III secretion pr 97.4 0.0011 2.3E-08 68.8 9.9 135 222-380 50-187 (426)
65 KOG2739 Leucine-rich acidic nu 97.2 8.6E-05 1.9E-09 70.4 0.3 104 45-153 42-149 (260)
66 KOG1947 Leucine rich repeat pr 97.1 8.3E-05 1.8E-09 82.8 -1.8 112 222-333 186-306 (482)
67 KOG2739 Leucine-rich acidic nu 96.9 0.00054 1.2E-08 65.1 2.4 90 68-160 38-129 (260)
68 KOG1947 Leucine rich repeat pr 96.8 0.00024 5.3E-09 79.1 -0.4 38 198-235 334-373 (482)
69 KOG2123 Uncharacterized conser 96.4 0.00011 2.4E-09 69.7 -5.5 102 45-153 18-123 (388)
70 KOG2123 Uncharacterized conser 96.0 0.00057 1.2E-08 65.1 -3.0 61 270-333 38-99 (388)
71 PF00560 LRR_1: Leucine Rich R 94.7 0.013 2.7E-07 32.9 0.7 12 641-652 2-13 (22)
72 PF00560 LRR_1: Leucine Rich R 94.1 0.013 2.9E-07 32.8 -0.1 19 617-636 2-20 (22)
73 KOG4308 LRR-containing protein 92.2 0.0011 2.4E-08 71.6 -12.0 67 461-527 110-185 (478)
74 KOG0473 Leucine-rich repeat pr 92.2 0.0047 1E-07 57.4 -6.1 80 593-675 44-123 (326)
75 TIGR00864 PCC polycystin catio 91.9 0.08 1.7E-06 67.0 2.0 36 670-705 2-37 (2740)
76 KOG4242 Predicted myosin-I-bin 90.7 2.1 4.5E-05 44.9 10.2 108 45-159 164-280 (553)
77 smart00369 LRR_TYP Leucine-ric 90.6 0.21 4.5E-06 29.3 1.9 14 616-629 3-16 (26)
78 smart00370 LRR Leucine-rich re 90.6 0.21 4.5E-06 29.3 1.9 14 616-629 3-16 (26)
79 PF13504 LRR_7: Leucine rich r 89.8 0.25 5.3E-06 25.6 1.5 11 299-309 3-13 (17)
80 smart00369 LRR_TYP Leucine-ric 88.5 0.47 1E-05 27.8 2.3 21 297-318 2-22 (26)
81 smart00370 LRR Leucine-rich re 88.5 0.47 1E-05 27.8 2.3 21 297-318 2-22 (26)
82 KOG3864 Uncharacterized conser 88.0 0.2 4.3E-06 46.2 0.7 80 48-131 103-185 (221)
83 KOG3864 Uncharacterized conser 87.4 0.099 2.1E-06 48.1 -1.6 85 73-157 101-186 (221)
84 KOG0473 Leucine-rich repeat pr 87.0 0.024 5.2E-07 52.9 -5.7 89 609-700 36-124 (326)
85 PF13516 LRR_6: Leucine Rich r 86.6 0.15 3.3E-06 29.2 -0.5 15 73-87 2-16 (24)
86 KOG4308 LRR-containing protein 86.2 0.0075 1.6E-07 65.2 -11.2 138 21-162 89-248 (478)
87 PF13516 LRR_6: Leucine Rich r 85.9 0.21 4.5E-06 28.6 -0.2 16 639-654 2-17 (24)
88 smart00364 LRR_BAC Leucine-ric 73.5 2.5 5.4E-05 24.7 1.4 14 591-604 2-15 (26)
89 smart00365 LRR_SD22 Leucine-ri 72.9 2.8 6.1E-05 24.6 1.6 14 615-628 2-15 (26)
90 smart00368 LRR_RI Leucine rich 65.5 3.9 8.5E-05 24.4 1.2 13 74-86 3-15 (28)
91 TIGR00864 PCC polycystin catio 63.3 4.7 0.0001 52.2 2.5 32 621-652 1-32 (2740)
92 PF15050 SCIMP: SCIMP protein 53.7 15 0.00034 30.3 3.1 30 735-764 10-39 (133)
93 smart00367 LRR_CC Leucine-rich 46.0 13 0.00028 21.6 1.2 9 99-107 4-12 (26)
94 KOG3763 mRNA export factor TAP 43.9 11 0.00023 40.8 1.0 61 591-653 218-284 (585)
95 smart00082 LRRCT Leucine rich 39.7 14 0.00031 25.6 0.9 12 697-708 1-12 (51)
96 KOG3763 mRNA export factor TAP 34.5 29 0.00063 37.7 2.5 12 321-332 243-254 (585)
97 PF15102 TMEM154: TMEM154 prot 31.7 15 0.00031 32.2 -0.2 16 745-760 72-87 (146)
98 PHA03099 epidermal growth fact 30.8 65 0.0014 27.4 3.4 27 740-766 108-134 (139)
99 PF05725 FNIP: FNIP Repeat; I 29.3 65 0.0014 21.6 2.7 14 587-600 8-21 (44)
100 PTZ00370 STEVOR; Provisional 28.4 50 0.0011 32.6 2.7 21 740-760 262-282 (296)
101 TIGR01478 STEVOR variant surfa 28.3 47 0.001 32.7 2.5 22 739-760 265-286 (295)
102 PF07204 Orthoreo_P10: Orthore 28.0 44 0.00096 26.5 1.9 29 731-759 41-69 (98)
103 PRK00523 hypothetical protein; 23.1 1.2E+02 0.0026 23.0 3.3 21 744-764 15-35 (72)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=7.8e-60 Score=565.59 Aligned_cols=541 Identities=33% Similarity=0.497 Sum_probs=389.8
Q ss_pred CCCEEEcCCCCCCCCccHhhhcCCCCCEEeCCCCcCcCCCChhhhcCCCCCCEEEcCCCcccCccCccccCCCCCccEEE
Q 003893 74 HLQELHMADNDLRGSLPWCLANMTSLRILDVSSNQLIGSISSSPLIHLTSIEDLILSDNHFQIPISLEPLFNHSRLKIFD 153 (788)
Q Consensus 74 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~ 153 (788)
+++.|+|++|.+.+..+..|..+++|++|+|++|.+.+.+|...+..+++|++|++++|.+++.++. ..+++|++|+
T Consensus 70 ~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~---~~l~~L~~L~ 146 (968)
T PLN00113 70 RVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR---GSIPNLETLD 146 (968)
T ss_pred cEEEEEecCCCccccCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc---cccCCCCEEE
Confidence 4555555555555555555555555555555555555455542333555555555555555443332 2344555555
Q ss_pred ccCCccchhhhccccCCCCcccccEEEccCCCcCCccCCccccCCCCCcEEEecCCCCCccCchHHhhcCCCCCEEEccC
Q 003893 154 AENNEINAEIIESHSLTTPNFQLQSLLLSSGYRDGITFPKFLYNQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVN 233 (788)
Q Consensus 154 l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~ 233 (788)
+++|.+. +..|..+..+++|++|++++|.+.+..|..+ .++++|++|++++
T Consensus 147 Ls~n~~~----------------------------~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~-~~l~~L~~L~L~~ 197 (968)
T PLN00113 147 LSNNMLS----------------------------GEIPNDIGSFSSLKVLDLGGNVLVGKIPNSL-TNLTSLEFLTLAS 197 (968)
T ss_pred CcCCccc----------------------------ccCChHHhcCCCCCEEECccCcccccCChhh-hhCcCCCeeeccC
Confidence 5544432 1233344455556666666665555555543 5566666666666
Q ss_pred CcccCcCccCccCCCCcCEEEccCCcCcccCChhhhhcCCCCcEEEeeCCcCCCCCCccccCCCCCCEEEccCCcCCCcc
Q 003893 234 DSLVGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEI 313 (788)
Q Consensus 234 ~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~ 313 (788)
|.+.+..+..+..+++|++|++++|.+.+.+|..+.. +++|++|++++|.+.+..|..++.+++|++|++++|.+.+.+
T Consensus 198 n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~-l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~ 276 (968)
T PLN00113 198 NQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGG-LTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPI 276 (968)
T ss_pred CCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhc-CCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccC
Confidence 6666555556666666666666666666566655544 566666666666666666666666666667776666666556
Q ss_pred chHHhhCCCCCcEEEccccccCccccccccCCCccCceeccCccCcccCCccCCCCCCCcEEEcccCcCCCCCCccccCC
Q 003893 314 PEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNL 393 (788)
Q Consensus 314 ~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l 393 (788)
|..+. .+++|++|++++|.+.+..+..+.++++|+.|++++|.+.+..|..+..+++|+.|++++|.+.+..|..+..+
T Consensus 277 p~~l~-~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~ 355 (968)
T PLN00113 277 PPSIF-SLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKH 355 (968)
T ss_pred chhHh-hccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCC
Confidence 65554 46666677776666666666666666677777777776666666666667777777777777666666666666
Q ss_pred CCccEEEccCCeeccCchhhhhcccCCcEEeccCCcCCCCCCCCC-CCCcccEEEccCcccccccCcccccccccccEEe
Q 003893 394 TVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCY-DFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILD 472 (788)
Q Consensus 394 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~-~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ 472 (788)
++|+.|++++|.+.+..|..+..+++|+.|++++|.+.+..|..+ .+++|+.|++++|.+.+.+|. .+..++.|+.|+
T Consensus 356 ~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~-~~~~l~~L~~L~ 434 (968)
T PLN00113 356 NNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPS-EFTKLPLVYFLD 434 (968)
T ss_pred CCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECCh-hHhcCCCCCEEE
Confidence 777777777777766666666666777777777777666555433 366777777777777666665 788899999999
Q ss_pred CCCCccCCCCCccccCCcCCcEEEccCccCcccCcccccCCCCCCEEEccCCcCCccCcccccccchhhhccCCCCCCCc
Q 003893 473 LSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHERYNNGSSLQPF 552 (788)
Q Consensus 473 l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 552 (788)
+++|.+.+..+..+..+++|+.|++++|++.+..|..+ ..++|+.|++++|++++..|..+..+.
T Consensus 435 Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~-~~~~L~~L~ls~n~l~~~~~~~~~~l~-------------- 499 (968)
T PLN00113 435 ISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSF-GSKRLENLDLSRNQFSGAVPRKLGSLS-------------- 499 (968)
T ss_pred CcCCcccCccChhhccCCCCcEEECcCceeeeecCccc-ccccceEEECcCCccCCccChhhhhhh--------------
Confidence 99999999888888899999999999999988777765 468999999999999988887776655
Q ss_pred ccceeecCCcccCcccccccceEeeecCceecccCCccCCCceEECCCCcccccCcccccccccCCeEeCCCCCCCCCCC
Q 003893 553 ETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIP 632 (788)
Q Consensus 553 ~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 632 (788)
+|+.|++++|.+.+.+|..+..+++|+.|+|++|.+++.+|
T Consensus 500 ---------------------------------------~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p 540 (968)
T PLN00113 500 ---------------------------------------ELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIP 540 (968)
T ss_pred ---------------------------------------ccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCC
Confidence 79999999999999999999999999999999999999999
Q ss_pred cccCCCCCCCeeeCCCcccCccCchhhhcCCCCcEEecccCcCcccCCCCccccCCCCcCCcCCCCCCCCCC
Q 003893 633 STFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSGKIPERAAQFATFNESSYEGNPFLCGPP 704 (788)
Q Consensus 633 ~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~~~~~~Np~~C~~~ 704 (788)
..|..+++|++||+++|++++.+|..+..+++|+.+++++|++++.+|.. .++.++....+.|||..|+.+
T Consensus 541 ~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~-~~~~~~~~~~~~~n~~lc~~~ 611 (968)
T PLN00113 541 ASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPST-GAFLAINASAVAGNIDLCGGD 611 (968)
T ss_pred hhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCCc-chhcccChhhhcCCccccCCc
Confidence 99999999999999999999999999999999999999999999999975 778888889999999999854
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=9.6e-56 Score=530.28 Aligned_cols=520 Identities=31% Similarity=0.500 Sum_probs=475.9
Q ss_pred CCCCCEEeCCCCcCcCCCChhhhcCCCCCCEEEcCCCcccCccCccccCCCCCccEEEccCCccchhhhccccCCCCccc
Q 003893 96 MTSLRILDVSSNQLIGSISSSPLIHLTSIEDLILSDNHFQIPISLEPLFNHSRLKIFDAENNEINAEIIESHSLTTPNFQ 175 (788)
Q Consensus 96 l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~ 175 (788)
..+++.||+++|.+.+.++. .+..+++|++|++++|++.+.++...+..+++|++|++++|.+.+..
T Consensus 68 ~~~v~~L~L~~~~i~~~~~~-~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~------------ 134 (968)
T PLN00113 68 SSRVVSIDLSGKNISGKISS-AIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSI------------ 134 (968)
T ss_pred CCcEEEEEecCCCccccCCh-HHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCcccccc------------
Confidence 35799999999999988877 89999999999999999988888666679999999999999875322
Q ss_pred ccEEEccCCCcCCccCCccccCCCCCcEEEecCCCCCccCchHHhhcCCCCCEEEccCCcccCcCccCccCCCCcCEEEc
Q 003893 176 LQSLLLSSGYRDGITFPKFLYNQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDSLVGPFRLPIHSHKQLRLLDV 255 (788)
Q Consensus 176 L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 255 (788)
|. ..+++|++|++++|.+++..|..+ +++++|++|++++|.+.+..+..+..+++|++|++
T Consensus 135 ----------------p~--~~l~~L~~L~Ls~n~~~~~~p~~~-~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 195 (968)
T PLN00113 135 ----------------PR--GSIPNLETLDLSNNMLSGEIPNDI-GSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTL 195 (968)
T ss_pred ----------------Cc--cccCCCCEEECcCCcccccCChHH-hcCCCCCEEECccCcccccCChhhhhCcCCCeeec
Confidence 11 246789999999999988888875 79999999999999999888889999999999999
Q ss_pred cCCcCcccCChhhhhcCCCCcEEEeeCCcCCCCCCccccCCCCCCEEEccCCcCCCccchHHhhCCCCCcEEEccccccC
Q 003893 256 SKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLE 335 (788)
Q Consensus 256 ~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~l~~n~i~ 335 (788)
++|.+.+.+|..+.. +++|++|++++|.+.+.+|..++.+++|++|++++|.+.+.+|..+. .+++|++|++++|.+.
T Consensus 196 ~~n~l~~~~p~~l~~-l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~-~l~~L~~L~L~~n~l~ 273 (968)
T PLN00113 196 ASNQLVGQIPRELGQ-MKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLG-NLKNLQYLFLYQNKLS 273 (968)
T ss_pred cCCCCcCcCChHHcC-cCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHh-CCCCCCEEECcCCeee
Confidence 999999888888776 78999999999999999999999999999999999999878887765 6999999999999999
Q ss_pred ccccccccCCCccCceeccCccCcccCCccCCCCCCCcEEEcccCcCCCCCCccccCCCCccEEEccCCeeccCchhhhh
Q 003893 336 GHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFC 415 (788)
Q Consensus 336 ~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~ 415 (788)
+..+..+.++++|++|++++|.+.+..|..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|.+.+..|..+.
T Consensus 274 ~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~ 353 (968)
T PLN00113 274 GPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLG 353 (968)
T ss_pred ccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHh
Confidence 88888888999999999999999989999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCcEEeccCCcCCCCCCCCC-CCCcccEEEccCcccccccCcccccccccccEEeCCCCccCCCCCccccCCcCCcE
Q 003893 416 QLRILQILDISDNNISGSLPSCY-DFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSY 494 (788)
Q Consensus 416 ~l~~L~~L~l~~n~~~~~~~~~~-~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~ 494 (788)
.+++|+.|++++|.+.+..+..+ .+++++.|++++|.+.+.+|. .+..+++|+.|++++|++++..|..+..+++|+.
T Consensus 354 ~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~-~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~ 432 (968)
T PLN00113 354 KHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPK-SLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYF 432 (968)
T ss_pred CCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCH-HHhCCCCCCEEECcCCEeeeECChhHhcCCCCCE
Confidence 99999999999999988777654 478999999999999888876 8889999999999999999999999999999999
Q ss_pred EEccCccCcccCcccccCCCCCCEEEccCCcCCccCcccccccchhhhccCCCCCCCcccceeecCCcccCcccccccce
Q 003893 495 LILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESF 574 (788)
Q Consensus 495 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 574 (788)
|++++|.+++..+..+..+++|+.|++++|++.+..|..+..
T Consensus 433 L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~-------------------------------------- 474 (968)
T PLN00113 433 LDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGS-------------------------------------- 474 (968)
T ss_pred EECcCCcccCccChhhccCCCCcEEECcCceeeeecCccccc--------------------------------------
Confidence 999999999989988899999999999999998777654421
Q ss_pred EeeecCceecccCCccCCCceEECCCCcccccCcccccccccCCeEeCCCCCCCCCCCcccCCCCCCCeeeCCCcccCcc
Q 003893 575 DFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWK 654 (788)
Q Consensus 575 ~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 654 (788)
++|+.|++++|++++..|..+..+++|+.|+|++|++.+.+|..+.++++|++|+|++|++++.
T Consensus 475 ----------------~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ 538 (968)
T PLN00113 475 ----------------KRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQ 538 (968)
T ss_pred ----------------ccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCccccc
Confidence 2799999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchhhhcCCCCcEEecccCcCcccCCCCccccCCCCcCCcCCCCCCCCCC
Q 003893 655 IPYQLVELNTLAVFSVAYNNLSGKIPERAAQFATFNESSYEGNPFLCGPP 704 (788)
Q Consensus 655 ~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~~~~~~Np~~C~~~ 704 (788)
+|..+..+++|+.|++++|++++.+|..+..+..+..+++++|++.+..+
T Consensus 539 ~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p 588 (968)
T PLN00113 539 IPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLP 588 (968)
T ss_pred CChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCC
Confidence 99999999999999999999999999999999999999999999987544
No 3
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=1.5e-41 Score=341.54 Aligned_cols=377 Identities=23% Similarity=0.243 Sum_probs=274.6
Q ss_pred CCcEEEeeCCcCCCCCCccccCCCCCCEEEccCCcCCCccchHHhhCCCCCcEEEccccccCccccccccCCCccCceec
Q 003893 274 RLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQL 353 (788)
Q Consensus 274 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l 353 (788)
.-+.|++++|++....+..|.++++|+.+++.+|.++ .+|.... ....|+.|+|.+|.|+.+....+..++.|+.|||
T Consensus 79 ~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~-~sghl~~L~L~~N~I~sv~se~L~~l~alrslDL 156 (873)
T KOG4194|consen 79 QTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGH-ESGHLEKLDLRHNLISSVTSEELSALPALRSLDL 156 (873)
T ss_pred ceeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccc-cccceeEEeeeccccccccHHHHHhHhhhhhhhh
Confidence 3445566666555555555556666666666666555 5554432 1334566666666655555555555566666666
Q ss_pred cCccCcccCCccCCCCCCCcEEEcccCcCCCCCCccccCCCCccEEEccCCeeccCchhhhhcccCCcEEeccCCcCCCC
Q 003893 354 EGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGS 433 (788)
Q Consensus 354 ~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~ 433 (788)
+.|.+..+....|..-.++++|++++|.|+......|..+.+|..|.++.|+++...+..|.++++|+.|+|..|++...
T Consensus 157 SrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~iriv 236 (873)
T KOG4194|consen 157 SRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIV 236 (873)
T ss_pred hhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeee
Confidence 66666544444555555666666666666655555566666666666666666655555666666666666666665432
Q ss_pred -CCCCCCCCcccEEEccCcccccccCcccccccccccEEeCCCCccCCCCCccccCCcCCcEEEccCccCcccCcccccC
Q 003893 434 -LPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCR 512 (788)
Q Consensus 434 -~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 512 (788)
...+.++++|+.|.+..|.+. .+.+++|..+.++++|+|+.|++......++-++++|+.|+++.|.|....++..+.
T Consensus 237 e~ltFqgL~Sl~nlklqrN~I~-kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~Wsf 315 (873)
T KOG4194|consen 237 EGLTFQGLPSLQNLKLQRNDIS-KLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSF 315 (873)
T ss_pred hhhhhcCchhhhhhhhhhcCcc-cccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhh
Confidence 122233566666666666664 566778999999999999999998777778889999999999999998888888888
Q ss_pred CCCCCEEEccCCcCCccCcccccccchhhhccCCCCCCCcccceeecCCcccCcccccccceEeeecCceecccCCccCC
Q 003893 513 LNQLQLLDLSNNNLHGHIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSL 592 (788)
Q Consensus 513 l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~ 592 (788)
.++|++|+|++|+++...+..|..+. .
T Consensus 316 tqkL~~LdLs~N~i~~l~~~sf~~L~-----------------------------------------------------~ 342 (873)
T KOG4194|consen 316 TQKLKELDLSSNRITRLDEGSFRVLS-----------------------------------------------------Q 342 (873)
T ss_pred cccceeEeccccccccCChhHHHHHH-----------------------------------------------------H
Confidence 99999999999999988888877666 7
Q ss_pred CceEECCCCcccccCcccccccccCCeEeCCCCCCCCCCC---cccCCCCCCCeeeCCCcccCccCchhhhcCCCCcEEe
Q 003893 593 LSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIP---STFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFS 669 (788)
Q Consensus 593 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~---~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~ 669 (788)
|++|+|++|+++.+....|.++++|++|||++|.+...+. ..|.++++|+.|++.+|+|..+...+|..+..|+.||
T Consensus 343 Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~Ld 422 (873)
T KOG4194|consen 343 LEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLD 422 (873)
T ss_pred hhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceec
Confidence 8899999999998888889999999999999999876544 4688899999999999999977777999999999999
Q ss_pred cccCcCcccCCCCccccCCCCcCCcCCCCCCCCCCCCC
Q 003893 670 VAYNNLSGKIPERAAQFATFNESSYEGNPFLCGPPLPI 707 (788)
Q Consensus 670 l~~N~l~~~~~~~~~~~~~l~~~~~~~Np~~C~~~~~~ 707 (788)
|.+|.+.++.|+.|.++ .++.+.+..--++|+|.+.+
T Consensus 423 L~~NaiaSIq~nAFe~m-~Lk~Lv~nSssflCDCql~W 459 (873)
T KOG4194|consen 423 LGDNAIASIQPNAFEPM-ELKELVMNSSSFLCDCQLKW 459 (873)
T ss_pred CCCCcceeecccccccc-hhhhhhhcccceEEeccHHH
Confidence 99999999999988888 88888888888899998653
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=1.5e-41 Score=341.66 Aligned_cols=387 Identities=23% Similarity=0.255 Sum_probs=278.2
Q ss_pred CCEEEccCCcccCcCccCccCCCCcCEEEccCCcCcccCChhhhhcCCCCcEEEeeCCcCCCCCCccccCCCCCCEEEcc
Q 003893 226 LRQLSLVNDSLVGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLS 305 (788)
Q Consensus 226 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 305 (788)
-+.|++++|.+.......|.++++|+++.+..|.++ .+|..... ..+++.|+|.+|.|.....+.++.++.|+.|||+
T Consensus 80 t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~-sghl~~L~L~~N~I~sv~se~L~~l~alrslDLS 157 (873)
T KOG4194|consen 80 TQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHE-SGHLEKLDLRHNLISSVTSEELSALPALRSLDLS 157 (873)
T ss_pred eeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hccccccc-ccceeEEeeeccccccccHHHHHhHhhhhhhhhh
Confidence 456778888777777777777888888888888776 67765443 5568888888888877777777778888888888
Q ss_pred CCcCCCccchHHhhCCCCCcEEEccccccCccccccccCCCccCceeccCccCcccCCccCCCCCCCcEEEcccCcCCCC
Q 003893 306 NNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGK 385 (788)
Q Consensus 306 ~n~i~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~ 385 (788)
.|.|+ ++|...|..-.++++|+|++|+|+......|.++.+|..|.|+.|+++...+..|..+++|+.|++..|.|...
T Consensus 158 rN~is-~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~iriv 236 (873)
T KOG4194|consen 158 RNLIS-EIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIV 236 (873)
T ss_pred hchhh-cccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeee
Confidence 88877 77766665556788888888888877777777777888888888888766666777788888888888877644
Q ss_pred CCccccCCCCccEEEccCCeeccCchhhhhcccCCcEEeccCCcCCCCCCCCCCCCcccEEEccCcccccccCccccccc
Q 003893 386 IPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNC 465 (788)
Q Consensus 386 ~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~ 465 (788)
.-..|.++++|+.|.+..|.+.....++|..+.++++|+|+.|++.. +..+.+.++
T Consensus 237 e~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~------------------------vn~g~lfgL 292 (873)
T KOG4194|consen 237 EGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQA------------------------VNEGWLFGL 292 (873)
T ss_pred hhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhh------------------------hhccccccc
Confidence 34567777888888888887777777777777788888887777763 333456666
Q ss_pred ccccEEeCCCCccCCCCCccccCCcCCcEEEccCccCcccCcccccCCCCCCEEEccCCcCCccCcccccccchhhhccC
Q 003893 466 LTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHERYNN 545 (788)
Q Consensus 466 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~ 545 (788)
+.|+.|++|+|.|..+.++..+.+++|++|+|+.|+++...+..|..+..|++|+|++|.+.......|..++
T Consensus 293 t~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~ls------- 365 (873)
T KOG4194|consen 293 TSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLS------- 365 (873)
T ss_pred chhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhh-------
Confidence 6777777777777666666666667777777777777766666676677777777777776655555555444
Q ss_pred CCCCCCcccceeecCCcccCcccccccceEeeecCceecccCCccCCCceEECCCCcccccC---cccccccccCCeEeC
Q 003893 546 GSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHI---PPQIGNLTKIQTLNL 622 (788)
Q Consensus 546 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~---~~~~~~l~~L~~L~L 622 (788)
+|++|||++|.+...+ ...|.++++|+.|+|
T Consensus 366 ----------------------------------------------sL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l 399 (873)
T KOG4194|consen 366 ----------------------------------------------SLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRL 399 (873)
T ss_pred ----------------------------------------------hhhhhcCcCCeEEEEEecchhhhccchhhhheee
Confidence 6677777777665333 345677888888888
Q ss_pred CCCCCCCCCCcccCCCCCCCeeeCCCcccCccCchhhhcCCCCcEEecccCcCcccCCCCccccCCCCcCCcCCCC
Q 003893 623 SHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSGKIPERAAQFATFNESSYEGNP 698 (788)
Q Consensus 623 s~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~~~~~~Np 698 (788)
.+|++..+...+|.+++.|++|||.+|.|..+-|.+|..+ .|+.|-+..-.+.|. +++.++.++-+..++
T Consensus 400 ~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nSssflCD-----Cql~Wl~qWl~~~~l 469 (873)
T KOG4194|consen 400 TGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNSSSFLCD-----CQLKWLAQWLYRRKL 469 (873)
T ss_pred cCceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhcccceEEe-----ccHHHHHHHHHhccc
Confidence 8888887767788888888888888888887778888877 777777766555543 455555554444433
No 5
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=100.00 E-value=1.4e-38 Score=306.60 Aligned_cols=480 Identities=28% Similarity=0.383 Sum_probs=247.0
Q ss_pred CCCEEeCCCCCCCCcccCCCCccCCCCCCCEEEcCCCCCCCCccHhhhcCCCCCEEeCCCCcCcCCCChhhhcCCCCCCE
Q 003893 47 SIQYLSLSNSSVSNNSRTLDQGLCPLVHLQELHMADNDLRGSLPWCLANMTSLRILDVSSNQLIGSISSSPLIHLTSIED 126 (788)
Q Consensus 47 ~L~~L~L~~~~l~~~~~~l~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~ 126 (788)
-++.|++++|.+.... +.+.++..|.+|++++|++. ..|.+++.+..++.++.+.|.++ .+|. .++.+.+|+.
T Consensus 46 ~l~~lils~N~l~~l~----~dl~nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls-~lp~-~i~s~~~l~~ 118 (565)
T KOG0472|consen 46 DLQKLILSHNDLEVLR----EDLKNLACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLS-ELPE-QIGSLISLVK 118 (565)
T ss_pred chhhhhhccCchhhcc----HhhhcccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHh-hccH-HHhhhhhhhh
Confidence 3555666666554332 24556666666666666665 44556666666666666666655 5555 5666666666
Q ss_pred EEcCCCcccCccCccccCCCCCccEEEccCCccchhhhccccCCCCcccccEEEccCCCcCCccCCccccCCCCCcEEEe
Q 003893 127 LILSDNHFQIPISLEPLFNHSRLKIFDAENNEINAEIIESHSLTTPNFQLQSLLLSSGYRDGITFPKFLYNQHDLEYVRL 206 (788)
Q Consensus 127 L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l 206 (788)
++.++|.+.. .+..++.+..++.++.
T Consensus 119 l~~s~n~~~e------------------------------------------------------l~~~i~~~~~l~dl~~ 144 (565)
T KOG0472|consen 119 LDCSSNELKE------------------------------------------------------LPDSIGRLLDLEDLDA 144 (565)
T ss_pred hhccccceee------------------------------------------------------cCchHHHHhhhhhhhc
Confidence 6666655432 1222333334444444
Q ss_pred cCCCCCccCchHHhhcCCCCCEEEccCCcccCcCccCccCCCCcCEEEccCCcCcccCChhhhhcCCCCcEEEeeCCcCC
Q 003893 207 SHIKMNEEFPNWLLENNTKLRQLSLVNDSLVGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALD 286 (788)
Q Consensus 207 ~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~ 286 (788)
.+|.+. ..|..+ .++.++..+++.+|+++...+.... ++.|+++|...|.+. .+|+.++. +.+|.-|++.+|++.
T Consensus 145 ~~N~i~-slp~~~-~~~~~l~~l~~~~n~l~~l~~~~i~-m~~L~~ld~~~N~L~-tlP~~lg~-l~~L~~LyL~~Nki~ 219 (565)
T KOG0472|consen 145 TNNQIS-SLPEDM-VNLSKLSKLDLEGNKLKALPENHIA-MKRLKHLDCNSNLLE-TLPPELGG-LESLELLYLRRNKIR 219 (565)
T ss_pred cccccc-cCchHH-HHHHHHHHhhccccchhhCCHHHHH-HHHHHhcccchhhhh-cCChhhcc-hhhhHHHHhhhcccc
Confidence 444442 333332 2444444444444444433332222 444444444444443 44444443 344444444444444
Q ss_pred CCCCccccCCCCCCEEEccCCcCCCccchHHhhCCCCCcEEEccccccCccccccccCCCccCceeccCccCcccCCccC
Q 003893 287 GSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSL 366 (788)
Q Consensus 287 ~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~ 366 (788)
..| .|.++..|++|.++.|+|+ .+|.....+++++..||+..|+++. .|+.+.-+.+|++||+++|.++ ..|..+
T Consensus 220 -~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklke-~Pde~clLrsL~rLDlSNN~is-~Lp~sL 294 (565)
T KOG0472|consen 220 -FLP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLKE-VPDEICLLRSLERLDLSNNDIS-SLPYSL 294 (565)
T ss_pred -cCC-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeecccccccc-CchHHHHhhhhhhhcccCCccc-cCCccc
Confidence 233 3444444444444444444 4444444444444444444444442 2233333444444444444444 333344
Q ss_pred CCCCCCcEEEcccCcCCCCCCccccCCCCccEEEccCCeeccCchhhhhcccCCcE----EeccCCc---------CCCC
Q 003893 367 SKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQI----LDISDNN---------ISGS 433 (788)
Q Consensus 367 ~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~----L~l~~n~---------~~~~ 433 (788)
+++ .|+.|.+.+|++...-.+.+.. . .... ++.|+. =-++... ..+.
T Consensus 295 gnl-hL~~L~leGNPlrTiRr~ii~~-g---------------T~~v---LKyLrs~~~~dglS~se~~~e~~~t~~~~~ 354 (565)
T KOG0472|consen 295 GNL-HLKFLALEGNPLRTIRREIISK-G---------------TQEV---LKYLRSKIKDDGLSQSEGGTETAMTLPSES 354 (565)
T ss_pred ccc-eeeehhhcCCchHHHHHHHHcc-c---------------HHHH---HHHHHHhhccCCCCCCcccccccCCCCCCc
Confidence 444 4444444444432110000000 0 0000 011111 0001000 0111
Q ss_pred CCCCCCCCcccEEEccCcccccccCcccccccc--cccEEeCCCCccCCCCCccccCCcCCcE-EEccCccCcccCcccc
Q 003893 434 LPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCL--TLMILDLSYNHLNGNIPDRVDGLSQLSY-LILAHNNLEGEVPIQL 510 (788)
Q Consensus 434 ~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~--~L~~L~l~~n~i~~~~~~~~~~l~~L~~-L~L~~n~l~~~~~~~~ 510 (788)
.+......+.+.|++++-+++ .+|...|.... -....++++|++. .+|..+..+..+.+ +.+++|.+. .+|..+
T Consensus 355 ~~~~~~~i~tkiL~~s~~qlt-~VPdEVfea~~~~~Vt~VnfskNqL~-elPk~L~~lkelvT~l~lsnn~is-fv~~~l 431 (565)
T KOG0472|consen 355 FPDIYAIITTKILDVSDKQLT-LVPDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLVELKELVTDLVLSNNKIS-FVPLEL 431 (565)
T ss_pred ccchhhhhhhhhhcccccccc-cCCHHHHHHhhhcceEEEecccchHh-hhhhhhHHHHHHHHHHHhhcCccc-cchHHH
Confidence 122222344555555555554 44544444332 2567778888776 56666666555544 344444444 667777
Q ss_pred cCCCCCCEEEccCCcCCccCcccccccchhhhccCCCCCCCcccceeecCCcccCcccccccceEeeecCceecccCCcc
Q 003893 511 CRLNQLQLLDLSNNNLHGHIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVP 590 (788)
Q Consensus 511 ~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~ 590 (788)
+.+++|..|++++|.+... |..+..+.
T Consensus 432 ~~l~kLt~L~L~NN~Ln~L-P~e~~~lv---------------------------------------------------- 458 (565)
T KOG0472|consen 432 SQLQKLTFLDLSNNLLNDL-PEEMGSLV---------------------------------------------------- 458 (565)
T ss_pred Hhhhcceeeecccchhhhc-chhhhhhh----------------------------------------------------
Confidence 7778888888877776533 32222222
Q ss_pred CCCceEECCCCcccccCcccccccccCCeEeCCCCCCCCCCCcccCCCCCCCeeeCCCcccCccCchhhhcCCCCcEEec
Q 003893 591 SLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSV 670 (788)
Q Consensus 591 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l 670 (788)
.|+.||++.|++. .+|+.+..+..++.+-.++|++....|+.+.++.+|.+|||.+|.+. .+|..++++.+|+.|++
T Consensus 459 -~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL 535 (565)
T KOG0472|consen 459 -RLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLEL 535 (565)
T ss_pred -hhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchh-hCChhhccccceeEEEe
Confidence 4777777777776 67777777777777777777777777777777778888888888777 56777777788888888
Q ss_pred ccCcCc
Q 003893 671 AYNNLS 676 (788)
Q Consensus 671 ~~N~l~ 676 (788)
++|++.
T Consensus 536 ~gNpfr 541 (565)
T KOG0472|consen 536 DGNPFR 541 (565)
T ss_pred cCCccC
Confidence 888777
No 6
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=100.00 E-value=1.1e-38 Score=307.20 Aligned_cols=428 Identities=26% Similarity=0.355 Sum_probs=299.7
Q ss_pred CCccccCCCCCcEEEecCCCCCccCchHHhhcCCCCCEEEccCCcccCcCccCccCCCCcCEEEccCCcCcccCChhhhh
Q 003893 191 FPKFLYNQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDSLVGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGD 270 (788)
Q Consensus 191 ~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~ 270 (788)
+|..+....++.+++.++|.+. +++..+ +.+..+..++..+|++... +..+..+.++..+++.+|+++ ..|+...+
T Consensus 106 lp~~i~s~~~l~~l~~s~n~~~-el~~~i-~~~~~l~dl~~~~N~i~sl-p~~~~~~~~l~~l~~~~n~l~-~l~~~~i~ 181 (565)
T KOG0472|consen 106 LPEQIGSLISLVKLDCSSNELK-ELPDSI-GRLLDLEDLDATNNQISSL-PEDMVNLSKLSKLDLEGNKLK-ALPENHIA 181 (565)
T ss_pred ccHHHhhhhhhhhhhcccccee-ecCchH-HHHhhhhhhhccccccccC-chHHHHHHHHHHhhccccchh-hCCHHHHH
Confidence 3444555666777777777774 445543 5677777777777777654 445566777778888888887 56666655
Q ss_pred cCCCCcEEEeeCCcCCCCCCccccCCCCCCEEEccCCcCCCccchHHhhCCCCCcEEEccccccCccccccccCCCccCc
Q 003893 271 ILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIW 350 (788)
Q Consensus 271 ~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~ 350 (788)
++.|++||.-.|-++ .+|+.++.+.+|..|++.+|++. .+|+ |.+|..|++++++.|.|.........+++++..
T Consensus 182 -m~~L~~ld~~~N~L~-tlP~~lg~l~~L~~LyL~~Nki~-~lPe--f~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~v 256 (565)
T KOG0472|consen 182 -MKRLKHLDCNSNLLE-TLPPELGGLESLELLYLRRNKIR-FLPE--FPGCSLLKELHVGENQIEMLPAEHLKHLNSLLV 256 (565)
T ss_pred -HHHHHhcccchhhhh-cCChhhcchhhhHHHHhhhcccc-cCCC--CCccHHHHHHHhcccHHHhhHHHHhccccccee
Confidence 677888888777776 56777888888888888888887 7773 345777888888888877665555567788888
Q ss_pred eeccCccCcccCCccCCCCCCCcEEEcccCcCCCCCCccccCCCCccEEEccCCeeccCchhhhhcccC---CcEEeccC
Q 003893 351 LQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRI---LQILDISD 427 (788)
Q Consensus 351 L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~---L~~L~l~~ 427 (788)
||+.+|++. ..|+.+.-+.+|++||+++|.++ ..|..++++ .|+.|.+.+|.+.. +-..+-+.+. |++|.=
T Consensus 257 LDLRdNklk-e~Pde~clLrsL~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNPlrT-iRr~ii~~gT~~vLKyLrs-- 330 (565)
T KOG0472|consen 257 LDLRDNKLK-EVPDEICLLRSLERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNPLRT-IRREIISKGTQEVLKYLRS-- 330 (565)
T ss_pred eeccccccc-cCchHHHHhhhhhhhcccCCccc-cCCcccccc-eeeehhhcCCchHH-HHHHHHcccHHHHHHHHHH--
Confidence 888888887 66777777788888888888887 566677777 77777777777663 2333322222 232221
Q ss_pred CcCCCCCCCCCCCCcccEEEccCcccccccCcc---cccccccccEEeCCCCccCCCCCccccCC--cCCcEEEccCccC
Q 003893 428 NNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEG---TFFNCLTLMILDLSYNHLNGNIPDRVDGL--SQLSYLILAHNNL 502 (788)
Q Consensus 428 n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~---~~~~~~~L~~L~l~~n~i~~~~~~~~~~l--~~L~~L~L~~n~l 502 (788)
.+....+....-.. .-....+.. ......+.+.|++++-+++....+.|..- .-....+++.|++
T Consensus 331 -~~~~dglS~se~~~---------e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL 400 (565)
T KOG0472|consen 331 -KIKDDGLSQSEGGT---------ETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQL 400 (565)
T ss_pred -hhccCCCCCCcccc---------cccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchH
Confidence 11111110000000 000011111 22334567888999888884433344322 2267889999998
Q ss_pred cccCcccccCCCCCCEEEccCCcCCccCcccccccchhhhccCCCCCCCcccceeecCCcccCcccccccceEeeecCce
Q 003893 503 EGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSIT 582 (788)
Q Consensus 503 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~ 582 (788)
. ++|..+..+..+++.-+..|+..+.+|..++.++
T Consensus 401 ~-elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~-------------------------------------------- 435 (565)
T KOG0472|consen 401 C-ELPKRLVELKELVTDLVLSNNKISFVPLELSQLQ-------------------------------------------- 435 (565)
T ss_pred h-hhhhhhHHHHHHHHHHHhhcCccccchHHHHhhh--------------------------------------------
Confidence 7 6777777666655443334444445665555444
Q ss_pred ecccCCccCCCceEECCCCcccccCcccccccccCCeEeCCCCCCCCCCCcccCCCCCCCeeeCCCcccCccCchhhhcC
Q 003893 583 YTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVEL 662 (788)
Q Consensus 583 ~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l 662 (788)
.|..|+|++|-+- .+|..++.+..|+.||+|+|++. ..|.....+..++.+-.++|++....|+.+..+
T Consensus 436 ---------kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm 504 (565)
T KOG0472|consen 436 ---------KLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNM 504 (565)
T ss_pred ---------cceeeecccchhh-hcchhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhh
Confidence 7899999999887 77888999999999999999999 788888888889999999999998888889999
Q ss_pred CCCcEEecccCcCcccCCCCccccCCCCcCCcCCCCCC
Q 003893 663 NTLAVFSVAYNNLSGKIPERAAQFATFNESSYEGNPFL 700 (788)
Q Consensus 663 ~~L~~L~l~~N~l~~~~~~~~~~~~~l~~~~~~~Np~~ 700 (788)
.+|..||+.+|.+.. +|..++.+++++.+.+.||||.
T Consensus 505 ~nL~tLDL~nNdlq~-IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 505 RNLTTLDLQNNDLQQ-IPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred hhcceeccCCCchhh-CChhhccccceeEEEecCCccC
Confidence 999999999999995 5555799999999999999997
No 7
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.98 E-value=6.9e-35 Score=309.79 Aligned_cols=404 Identities=24% Similarity=0.314 Sum_probs=241.9
Q ss_pred CccCCCCCCCEEEcCCCCCCCCccHhhhcCCCCCEEeCCCCcCcCCCChhhhcCCCCCCEEEcCCCcccCccCccccCCC
Q 003893 67 QGLCPLVHLQELHMADNDLRGSLPWCLANMTSLRILDVSSNQLIGSISSSPLIHLTSIEDLILSDNHFQIPISLEPLFNH 146 (788)
Q Consensus 67 ~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l 146 (788)
.-+-.-..++.|+++.|-+....-+.+.+..+|+.||+++|++. ..|. .+..+.+|+.|+++.|.+. ..+ ....++
T Consensus 15 ~~i~~~~~~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~-~fp~-~it~l~~L~~ln~s~n~i~-~vp-~s~~~~ 90 (1081)
T KOG0618|consen 15 EQILNNEALQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQIS-SFPI-QITLLSHLRQLNLSRNYIR-SVP-SSCSNM 90 (1081)
T ss_pred hhhccHHHHHhhhccccccccCchHHhhheeeeEEeeccccccc-cCCc-hhhhHHHHhhcccchhhHh-hCc-hhhhhh
Confidence 33433344667777777655433344455556777777777765 4555 6666777777777777665 233 345566
Q ss_pred CCccEEEccCCccchhhhccccCCCCcccccEEEccCCCcCCccCCccccCCCCCcEEEecCCCCCccCchHHhhcCCCC
Q 003893 147 SRLKIFDAENNEINAEIIESHSLTTPNFQLQSLLLSSGYRDGITFPKFLYNQHDLEYVRLSHIKMNEEFPNWLLENNTKL 226 (788)
Q Consensus 147 ~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L 226 (788)
.+|+++.+.+|.+. ..|..+..+++|+.|+++.|.+ +..|..+ ..+..+
T Consensus 91 ~~l~~lnL~~n~l~-----------------------------~lP~~~~~lknl~~LdlS~N~f-~~~Pl~i-~~lt~~ 139 (1081)
T KOG0618|consen 91 RNLQYLNLKNNRLQ-----------------------------SLPASISELKNLQYLDLSFNHF-GPIPLVI-EVLTAE 139 (1081)
T ss_pred hcchhheeccchhh-----------------------------cCchhHHhhhcccccccchhcc-CCCchhH-HhhhHH
Confidence 67777776666532 2456666777777777777776 3555543 466667
Q ss_pred CEEEccCCcccCcCccCccCCCCcCEEEccCCcCcccCChhhhhcCCCCcEEEeeCCcCCCCCCccccCCCCCCEEEccC
Q 003893 227 RQLSLVNDSLVGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSN 306 (788)
Q Consensus 227 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 306 (788)
..+..++|..... ++.. .++.+++..|.+.+.++.++.. +.. .|+|.+|.+. -..+..+++|+.+....
T Consensus 140 ~~~~~s~N~~~~~----lg~~-~ik~~~l~~n~l~~~~~~~i~~-l~~--~ldLr~N~~~---~~dls~~~~l~~l~c~r 208 (1081)
T KOG0618|consen 140 EELAASNNEKIQR----LGQT-SIKKLDLRLNVLGGSFLIDIYN-LTH--QLDLRYNEME---VLDLSNLANLEVLHCER 208 (1081)
T ss_pred HHHhhhcchhhhh----hccc-cchhhhhhhhhcccchhcchhh-hhe--eeecccchhh---hhhhhhccchhhhhhhh
Confidence 7777777622111 1111 1667777777777666666543 223 5888888776 12356778888888888
Q ss_pred CcCCCccchHHhhCCCCCcEEEccccccCccccccccCCCccCceeccCccCcccCCccCCCCCCCcEEEcccCcCCCCC
Q 003893 307 NQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKI 386 (788)
Q Consensus 307 n~i~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 386 (788)
|++. .+.. .-++|+.|+.+.|.++..... .-..+|++++++.|++. .+|.++..+.+|+.++..+|.+. ..
T Consensus 209 n~ls-~l~~----~g~~l~~L~a~~n~l~~~~~~--p~p~nl~~~dis~n~l~-~lp~wi~~~~nle~l~~n~N~l~-~l 279 (1081)
T KOG0618|consen 209 NQLS-ELEI----SGPSLTALYADHNPLTTLDVH--PVPLNLQYLDISHNNLS-NLPEWIGACANLEALNANHNRLV-AL 279 (1081)
T ss_pred cccc-eEEe----cCcchheeeeccCcceeeccc--cccccceeeecchhhhh-cchHHHHhcccceEecccchhHH-hh
Confidence 8776 4332 246788888888887733322 23467888888888887 55677788888888888888875 56
Q ss_pred CccccCCCCccEEEccCCeeccCchhhhhcccCCcEEeccCCcCCCCCCCCCC--CCcccEEEccCcccccccCcccccc
Q 003893 387 PRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYD--FVCIEQVHLSKNMLHGQLKEGTFFN 464 (788)
Q Consensus 387 ~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~--~~~L~~L~l~~n~~~~~~~~~~~~~ 464 (788)
|..+...++|+.|.+..|.+. -+|....+.+.|++||+..|.+....+..+. ...+..++.+.|.+. ..|...=..
T Consensus 280 p~ri~~~~~L~~l~~~~nel~-yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~-~lp~~~e~~ 357 (1081)
T KOG0618|consen 280 PLRISRITSLVSLSAAYNELE-YIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLS-TLPSYEENN 357 (1081)
T ss_pred HHHHhhhhhHHHHHhhhhhhh-hCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhcccc-ccccccchh
Confidence 666667777888888777776 4455566677788888887777533332222 112344444444432 122111222
Q ss_pred cccccEEeCCCCccCCCCCccccCCcCCcEEEccCccCcccCcccccCCCCCCEEEccCCcCC
Q 003893 465 CLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLH 527 (788)
Q Consensus 465 ~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 527 (788)
.+.|+.|.+.+|.+++..-..+.+++.|+.|+|++|++.......+.++..|++|++|+|+++
T Consensus 358 ~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~ 420 (1081)
T KOG0618|consen 358 HAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT 420 (1081)
T ss_pred hHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh
Confidence 334555555555555444444455555555555555555333344455555555555555554
No 8
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.97 E-value=2.3e-33 Score=298.27 Aligned_cols=454 Identities=27% Similarity=0.300 Sum_probs=258.4
Q ss_pred eecCCCCCCCCCCccEEEcCCcccccCccchhHhhhcCCCCCEEeCCCCCCCCcccCCCCccCCCCCCCEEEcCCCCCCC
Q 003893 8 GVLSGQGFPHFKSLKELYMDDARIALNTSFLQIIGESMPSIQYLSLSNSSVSNNSRTLDQGLCPLVHLQELHMADNDLRG 87 (788)
Q Consensus 8 ~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~l~~~l~~l~~L~~L~L~~n~i~~ 87 (788)
..+|...+..-. +..|++.. +.+...-.+.+.. ..+|++||+++|.+... | ..+..+.+|+.|+++.|.+.
T Consensus 11 ~~ip~~i~~~~~-~~~ln~~~--N~~l~~pl~~~~~-~v~L~~l~lsnn~~~~f-p---~~it~l~~L~~ln~s~n~i~- 81 (1081)
T KOG0618|consen 11 ELIPEQILNNEA-LQILNLRR--NSLLSRPLEFVEK-RVKLKSLDLSNNQISSF-P---IQITLLSHLRQLNLSRNYIR- 81 (1081)
T ss_pred cccchhhccHHH-HHhhhccc--cccccCchHHhhh-eeeeEEeeccccccccC-C---chhhhHHHHhhcccchhhHh-
Confidence 344533333333 66777776 3321111233333 44588888888776432 2 56777888888888888776
Q ss_pred CccHhhhcCCCCCEEeCCCCcCcCCCChhhhcCCCCCCEEEcCCCcccCccCccccCCCCCccEEEccCCccchhhhccc
Q 003893 88 SLPWCLANMTSLRILDVSSNQLIGSISSSPLIHLTSIEDLILSDNHFQIPISLEPLFNHSRLKIFDAENNEINAEIIESH 167 (788)
Q Consensus 88 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~ 167 (788)
..|...+++.+|++|+|.+|.+. ..|. .+..+.+|++|+++.|++. .+| ..+..+..+..+..++|.....
T Consensus 82 ~vp~s~~~~~~l~~lnL~~n~l~-~lP~-~~~~lknl~~LdlS~N~f~-~~P-l~i~~lt~~~~~~~s~N~~~~~----- 152 (1081)
T KOG0618|consen 82 SVPSSCSNMRNLQYLNLKNNRLQ-SLPA-SISELKNLQYLDLSFNHFG-PIP-LVIEVLTAEEELAASNNEKIQR----- 152 (1081)
T ss_pred hCchhhhhhhcchhheeccchhh-cCch-hHHhhhcccccccchhccC-CCc-hhHHhhhHHHHHhhhcchhhhh-----
Confidence 55677778888888888888765 6676 7788888888888888775 344 2456666777777776621111
Q ss_pred cCCCCcccccEEEccCCCcCCccCCccccCCCCCcEEEecCCCCCccCchHHhhcCCCCCEEEccCCcccCcCccCccCC
Q 003893 168 SLTTPNFQLQSLLLSSGYRDGITFPKFLYNQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDSLVGPFRLPIHSH 247 (788)
Q Consensus 168 ~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~ 247 (788)
.+...++.+++ ..+...+.++..+..+.. .+++.+|.+. ... +.++++|+.+....|.+..... .-
T Consensus 153 ---lg~~~ik~~~l-~~n~l~~~~~~~i~~l~~--~ldLr~N~~~-~~d---ls~~~~l~~l~c~rn~ls~l~~----~g 218 (1081)
T KOG0618|consen 153 ---LGQTSIKKLDL-RLNVLGGSFLIDIYNLTH--QLDLRYNEME-VLD---LSNLANLEVLHCERNQLSELEI----SG 218 (1081)
T ss_pred ---hccccchhhhh-hhhhcccchhcchhhhhe--eeecccchhh-hhh---hhhccchhhhhhhhcccceEEe----cC
Confidence 11112333333 333334444444443333 4666666553 111 2455666666665555443221 23
Q ss_pred CCcCEEEccCCcCcccCChhhhhcCCCCcEEEeeCCcCCCCCCccccCCCCCCEEEccCCcCCCccchHHhhCCCCCcEE
Q 003893 248 KQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSL 327 (788)
Q Consensus 248 ~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L 327 (788)
++++.|+.++|.++...+.. ...+|+++++++|+++ .+|+++..+.+|+.++..+|.++ .+|..++. ..+|+.|
T Consensus 219 ~~l~~L~a~~n~l~~~~~~p---~p~nl~~~dis~n~l~-~lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~-~~~L~~l 292 (1081)
T KOG0618|consen 219 PSLTALYADHNPLTTLDVHP---VPLNLQYLDISHNNLS-NLPEWIGACANLEALNANHNRLV-ALPLRISR-ITSLVSL 292 (1081)
T ss_pred cchheeeeccCcceeecccc---ccccceeeecchhhhh-cchHHHHhcccceEecccchhHH-hhHHHHhh-hhhHHHH
Confidence 45566666666554211111 1235666666666665 34466666666666666666665 55555553 4556666
Q ss_pred EccccccCccccccccCCCccCceeccCccCcccCCcc-CCCCCC-CcEEEcccCcCCCCCCccccCCCCccEEEccCCe
Q 003893 328 ALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQS-LSKCSS-LQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNH 405 (788)
Q Consensus 328 ~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~-~~~l~~-L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~ 405 (788)
.+..|.+..+ +....+...|++|++..|.+. ..|+. +..... |..|+.+.|++.......=...+.|+.|++.+|.
T Consensus 293 ~~~~nel~yi-p~~le~~~sL~tLdL~~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~ 370 (1081)
T KOG0618|consen 293 SAAYNELEYI-PPFLEGLKSLRTLDLQSNNLP-SLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNH 370 (1081)
T ss_pred HhhhhhhhhC-CCcccccceeeeeeehhcccc-ccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCc
Confidence 6666655532 223334555666666666555 23322 222221 4444445554442211111123445555555555
Q ss_pred eccCchhhhhcccCCcEEeccCCcCCCCCCCCCCCCcccEEEccCcccccccCcccccccccccEEeCCCCccCCCCCcc
Q 003893 406 IEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDR 485 (788)
Q Consensus 406 ~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~ 485 (788)
++...-..+.+.++|+.|+|++|++. .+|...+.++..|++|++|+|+++ .+|..
T Consensus 371 Ltd~c~p~l~~~~hLKVLhLsyNrL~------------------------~fpas~~~kle~LeeL~LSGNkL~-~Lp~t 425 (1081)
T KOG0618|consen 371 LTDSCFPVLVNFKHLKVLHLSYNRLN------------------------SFPASKLRKLEELEELNLSGNKLT-TLPDT 425 (1081)
T ss_pred ccccchhhhccccceeeeeecccccc------------------------cCCHHHHhchHHhHHHhcccchhh-hhhHH
Confidence 55544445555555555555555543 566667777888888888888887 56677
Q ss_pred ccCCcCCcEEEccCccCcccCcccccCCCCCCEEEccCCcCCc
Q 003893 486 VDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHG 528 (788)
Q Consensus 486 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 528 (788)
+..++.|++|...+|++. ..| .+..++.|+.+|++.|.++.
T Consensus 426 va~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~ 466 (1081)
T KOG0618|consen 426 VANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSE 466 (1081)
T ss_pred HHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhh
Confidence 778888888888888877 455 67778888888888887763
No 9
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.96 E-value=3.6e-32 Score=275.97 Aligned_cols=364 Identities=27% Similarity=0.347 Sum_probs=209.9
Q ss_pred EEeeCCcCC-CCCCccccCCCCCCEEEccCCcCCCccchHHhhCCCCCcEEEccccccCccccccccCCCccCceeccCc
Q 003893 278 FNISMNALD-GSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGN 356 (788)
Q Consensus 278 L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n 356 (788)
.|+++|.++ +..|.....+++++.|.|.+.++. .+|+.+. .+.+|++|.+++|++.. ....+..+|.|+.+.+..|
T Consensus 12 vDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~-~lqkLEHLs~~HN~L~~-vhGELs~Lp~LRsv~~R~N 88 (1255)
T KOG0444|consen 12 VDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELS-RLQKLEHLSMAHNQLIS-VHGELSDLPRLRSVIVRDN 88 (1255)
T ss_pred ccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHH-HHhhhhhhhhhhhhhHh-hhhhhccchhhHHHhhhcc
Confidence 334444433 233444444444444444444444 4444443 24444444444444432 1233344455555555554
Q ss_pred cCcc-cCCccCCCCCCCcEEEcccCcCCCCCCccccCCCCccEEEccCCeeccCchhhhhcccCCcEEeccCCcCCCCCC
Q 003893 357 HFVG-EIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLP 435 (788)
Q Consensus 357 ~~~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ 435 (788)
++.. -+|..+..+..|..||+++|++. ..|..+...+++-.|++++|+|..+....|.+++.|-.||+|+|++...+|
T Consensus 89 ~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPP 167 (1255)
T KOG0444|consen 89 NLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPP 167 (1255)
T ss_pred ccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhhhcCH
Confidence 4432 23444445555555555555554 444455555555555555555554433444555555555555555554444
Q ss_pred CCCCCCcccEEEccCcccccccCcccccccccccEEeCCCCccC-CCCCccccCCcCCcEEEccCccCcccCcccccCCC
Q 003893 436 SCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLN-GNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLN 514 (788)
Q Consensus 436 ~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 514 (788)
....+..|++|.+++|.+.- ..-..+..+++|++|.+++.+-+ .-+|..+.++.+|+.++++.|.+. ..|+.+..++
T Consensus 168 Q~RRL~~LqtL~Ls~NPL~h-fQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~ 245 (1255)
T KOG0444|consen 168 QIRRLSMLQTLKLSNNPLNH-FQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLR 245 (1255)
T ss_pred HHHHHhhhhhhhcCCChhhH-HHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHHHhhhh
Confidence 44445555555555555431 11113444556677777766543 236667777777777777777776 6777777777
Q ss_pred CCCEEEccCCcCCccCcccccccchhhhccCCCCCCCcccceeecCCcccCcccccccceEeeecCceecccCCccCCCc
Q 003893 515 QLQLLDLSNNNLHGHIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLS 594 (788)
Q Consensus 515 ~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~ 594 (788)
+|+.|+||+|+|+...... ....+|+
T Consensus 246 ~LrrLNLS~N~iteL~~~~------------------------------------------------------~~W~~lE 271 (1255)
T KOG0444|consen 246 NLRRLNLSGNKITELNMTE------------------------------------------------------GEWENLE 271 (1255)
T ss_pred hhheeccCcCceeeeeccH------------------------------------------------------HHHhhhh
Confidence 7777777777776332100 0011567
Q ss_pred eEECCCCcccccCcccccccccCCeEeCCCCCCC-CCCCcccCCCCCCCeeeCCCcccCccCchhhhcCCCCcEEecccC
Q 003893 595 GLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLA-GPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYN 673 (788)
Q Consensus 595 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N 673 (788)
+|++|.|+++ ..|+++..++.|+.|.+.+|+++ .-+|++++.+..|+.+..++|.+. ..|+.+..+..|+.|.|+.|
T Consensus 272 tLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~N 349 (1255)
T KOG0444|consen 272 TLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHN 349 (1255)
T ss_pred hhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhccccc
Confidence 7777777777 66777777777777777777775 246777777777777777777776 66777777777777777777
Q ss_pred cCcccCCCCccccCCCCcCCcCCCCCCCCCC
Q 003893 674 NLSGKIPERAAQFATFNESSYEGNPFLCGPP 704 (788)
Q Consensus 674 ~l~~~~~~~~~~~~~l~~~~~~~Np~~C~~~ 704 (788)
.+. ..|+.+.-++.+..+++..||-+--|+
T Consensus 350 rLi-TLPeaIHlL~~l~vLDlreNpnLVMPP 379 (1255)
T KOG0444|consen 350 RLI-TLPEAIHLLPDLKVLDLRENPNLVMPP 379 (1255)
T ss_pred cee-echhhhhhcCCcceeeccCCcCccCCC
Confidence 776 356666777777777777777665443
No 10
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.96 E-value=2.1e-32 Score=277.61 Aligned_cols=79 Identities=27% Similarity=0.439 Sum_probs=37.2
Q ss_pred CceEECCCCccc-ccCcccccccccCCeEeCCCCCCCCCCCcccCCCCCCCeeeCCCcccCccCchhhhcCCCCcEEecc
Q 003893 593 LSGLDLSCNRLI-GHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVA 671 (788)
Q Consensus 593 L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~ 671 (788)
|+.|++.+|+++ .-+|..++.+.+|+.+..++|++. ..|+++..+..|+.|.|+.|++. ..|+++.-++.|+.||++
T Consensus 293 L~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlr 370 (1255)
T KOG0444|consen 293 LTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLR 370 (1255)
T ss_pred HHHHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhccccccee-echhhhhhcCCcceeecc
Confidence 344444444443 233444444445555544444444 44444444455555555555444 344444444445555554
Q ss_pred cC
Q 003893 672 YN 673 (788)
Q Consensus 672 ~N 673 (788)
.|
T Consensus 371 eN 372 (1255)
T KOG0444|consen 371 EN 372 (1255)
T ss_pred CC
Confidence 44
No 11
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.93 E-value=1.4e-28 Score=237.51 Aligned_cols=397 Identities=21% Similarity=0.250 Sum_probs=235.4
Q ss_pred CCCCcCEEEccCCcCcccCChhhhhcCCCCcEEEeeCCcCCCCCCccccCCCCCCEEEccC-CcCCCccchHHhhCCCCC
Q 003893 246 SHKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSN-NQLTGEIPEHLAMGCVSL 324 (788)
Q Consensus 246 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~-n~i~~~~~~~~~~~l~~L 324 (788)
-.+...+++|..|.|+ .+|+..|..+++|+.|||++|.|+.+.|++|.++++|..|.+.+ |+|+ .+|...|.++.++
T Consensus 65 LP~~tveirLdqN~I~-~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~-~l~k~~F~gL~sl 142 (498)
T KOG4237|consen 65 LPPETVEIRLDQNQIS-SIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKIT-DLPKGAFGGLSSL 142 (498)
T ss_pred CCCcceEEEeccCCcc-cCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchh-hhhhhHhhhHHHH
Confidence 3456778999999998 89999988899999999999999999999999999988877666 8898 9999999999999
Q ss_pred cEEEccccccCccccccccCCCccCceeccCccCcccCCccCCCCCCCcEEEcccCcCC------------CCCCccccC
Q 003893 325 RSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLS------------GKIPRWLGN 392 (788)
Q Consensus 325 ~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~------------~~~~~~l~~ 392 (788)
+.|.+.-|++.......|..+++|..|.+.+|.+..+-...|..+..++.+.+..|.+. ...|..++.
T Consensus 143 qrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsg 222 (498)
T KOG4237|consen 143 QRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSG 222 (498)
T ss_pred HHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhccc
Confidence 99999999999888889999999999999999998666668999999999998888732 112222222
Q ss_pred CCCccEEEccCCeeccCchhhhhcc-cCCcEEeccCCcCCCCCC-CCC-CCCcccEEEccCcccccccCccccccccccc
Q 003893 393 LTVLRHIIMPKNHIEGPIPLEFCQL-RILQILDISDNNISGSLP-SCY-DFVCIEQVHLSKNMLHGQLKEGTFFNCLTLM 469 (788)
Q Consensus 393 l~~L~~L~l~~n~~~~~~~~~~~~l-~~L~~L~l~~n~~~~~~~-~~~-~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~ 469 (788)
........+.+.++..+.+..|... .++..=-.+.+......| ..| .+++|+.|++++|.++ .+.+++|.+...++
T Consensus 223 arc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~-~i~~~aFe~~a~l~ 301 (498)
T KOG4237|consen 223 ARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKIT-RIEDGAFEGAAELQ 301 (498)
T ss_pred ceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccc-hhhhhhhcchhhhh
Confidence 2222222222222222222221110 001000001111111111 111 1444444444444443 23334666666666
Q ss_pred EEeCCCCccCCCCCccccCCcCCcEEEccCccCcccCcccccCCCCCCEEEccCCcCCc-----------------cCcc
Q 003893 470 ILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHG-----------------HIPS 532 (788)
Q Consensus 470 ~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-----------------~~~~ 532 (788)
+|.|..|++.......|.++..|+.|+|.+|+|+...|.+|..+.+|.+|++-.|++.- ..|.
T Consensus 302 eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l~wl~~Wlr~~~~~~~~~ 381 (498)
T KOG4237|consen 302 ELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCRLAWLGEWLRKKSVVGNPR 381 (498)
T ss_pred hhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCccchHHHHHHHhhCCCCCCCC
Confidence 66666666654444555666666666666666665556666666666666666555430 0111
Q ss_pred cccccchhhhccCCCCCCCc----ccceeecCCcccCcccccccceEeeecCceecccCCccCCCceEECCCCcccccCc
Q 003893 533 CFDNTTLHERYNNGSSLQPF----ETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIP 608 (788)
Q Consensus 533 ~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~ 608 (788)
+-..-.+...-........+ +............+.+..++.+--.++.........+|....+|++.+|.++ .+|
T Consensus 382 Cq~p~~~~~~~~~dv~~~~~~c~~~ee~~~~~s~~cP~~c~c~~tVvRcSnk~lk~lp~~iP~d~telyl~gn~~~-~vp 460 (498)
T KOG4237|consen 382 CQSPGFVRQIPISDVAFGDFRCGGPEELGCLTSSPCPPPCTCLDTVVRCSNKLLKLLPRGIPVDVTELYLDGNAIT-SVP 460 (498)
T ss_pred CCCCchhccccchhccccccccCCccccCCCCCCCCCCCcchhhhhHhhcccchhhcCCCCCchhHHHhcccchhc-ccC
Confidence 11110000000000000000 0011111112233334455555444555555555667777777777777777 444
Q ss_pred ccccccccCCeEeCCCCCCCCCCCcccCCCCCCCeeeCCCc
Q 003893 609 PQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYN 649 (788)
Q Consensus 609 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 649 (788)
.. .+.+| .+|+++|++.......|.++++|.+|-|++|
T Consensus 461 ~~--~~~~l-~~dls~n~i~~Lsn~tf~n~tql~tlilsyn 498 (498)
T KOG4237|consen 461 DE--LLRSL-LLDLSNNRISSLSNYTFSNMTQLSTLILSYN 498 (498)
T ss_pred HH--HHhhh-hcccccCceehhhcccccchhhhheeEEecC
Confidence 44 45666 7777777777666667777777777777765
No 12
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.91 E-value=9e-27 Score=225.15 Aligned_cols=281 Identities=21% Similarity=0.215 Sum_probs=222.1
Q ss_pred EEccCCcCcccCChhhhhcCCCCcEEEeeCCcCCCCCCccccCCCCCCEEEccCCcCCCccchHHhhCCCCCcEEEccc-
Q 003893 253 LDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSN- 331 (788)
Q Consensus 253 L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~l~~- 331 (788)
.+-++-+++ .+|..+. +.-+.++|..|.|+.+.+.+|+.+++|+.|||++|.|+ .|....|.++++|.+|-+.+
T Consensus 51 VdCr~~GL~-eVP~~LP---~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is-~I~p~AF~GL~~l~~Lvlyg~ 125 (498)
T KOG4237|consen 51 VDCRGKGLT-EVPANLP---PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNIS-FIAPDAFKGLASLLSLVLYGN 125 (498)
T ss_pred EEccCCCcc-cCcccCC---CcceEEEeccCCcccCChhhccchhhhceecccccchh-hcChHhhhhhHhhhHHHhhcC
Confidence 455555666 7777653 47889999999999888899999999999999999999 88888888999988877766
Q ss_pred cccCccccccccCCCccCceeccCccCcccCCccCCCCCCCcEEEcccCcCCCCCCccccCCCCccEEEccCCeecc---
Q 003893 332 NNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEG--- 408 (788)
Q Consensus 332 n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~--- 408 (788)
|+|+......|.++..|+.|.+.-|++..+..+.|..++++..|.+..|.+....-..|..+.+++.+.+..|.+..
T Consensus 126 NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCn 205 (498)
T KOG4237|consen 126 NKITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCN 205 (498)
T ss_pred CchhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccc
Confidence 99999999999999999999999999998888999999999999999999885555588999999999998887321
Q ss_pred ---------CchhhhhcccCCcEEeccCCcCCCCCCCCCCCC--cccEEEccCcccccccCcccccccccccEEeCCCCc
Q 003893 409 ---------PIPLEFCQLRILQILDISDNNISGSLPSCYDFV--CIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNH 477 (788)
Q Consensus 409 ---------~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~--~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~ 477 (788)
..+..+++..-..-..+.+.++...-+.-+... .+..-..+.+...+..|...|..+++|+.|++++|+
T Consensus 206 L~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~ 285 (498)
T KOG4237|consen 206 LPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNK 285 (498)
T ss_pred cchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCc
Confidence 122222333323333333333332222222211 222222334445566777789999999999999999
Q ss_pred cCCCCCccccCCcCCcEEEccCccCcccCcccccCCCCCCEEEccCCcCCccCcccccccc
Q 003893 478 LNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTT 538 (788)
Q Consensus 478 i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~ 538 (788)
++.+-+.+|++...+++|.|..|++.......|.++..|+.|+|.+|+|+...|..|....
T Consensus 286 i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~ 346 (498)
T KOG4237|consen 286 ITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLF 346 (498)
T ss_pred cchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccc
Confidence 9999999999999999999999999877778899999999999999999999998887765
No 13
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.90 E-value=3.2e-22 Score=240.10 Aligned_cols=341 Identities=20% Similarity=0.228 Sum_probs=222.5
Q ss_pred cCccCCCCcCEEEccCCc------CcccCChhhhhcCCCCcEEEeeCCcCCCCCCccccCCCCCCEEEccCCcCCCccch
Q 003893 242 LPIHSHKQLRLLDVSKNN------FQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPE 315 (788)
Q Consensus 242 ~~~~~~~~L~~L~l~~n~------l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~ 315 (788)
..|..+++|+.|.+..+. +...+|..+....++|+.|.+.++.+. .+|..| ...+|+.|++.++.+. .++.
T Consensus 552 ~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~-~L~~ 628 (1153)
T PLN03210 552 NAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLE-KLWD 628 (1153)
T ss_pred HHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC-CccCCcEEECcCcccc-cccc
Confidence 345566777777765442 222345555443456777777777766 455555 3567777777777776 6665
Q ss_pred HHhhCCCCCcEEEccccccCccccccccCCCccCceeccCccCcccCCccCCCCCCCcEEEcccCcCCCCCCccccCCCC
Q 003893 316 HLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTV 395 (788)
Q Consensus 316 ~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~ 395 (788)
.+. .+++|+.|+++++......+ .+..+++|++|++++|.....+|..+..+++|+.|++++|.....+|..+ ++++
T Consensus 629 ~~~-~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~s 705 (1153)
T PLN03210 629 GVH-SLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKS 705 (1153)
T ss_pred ccc-cCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCC
Confidence 543 47777777777665333333 35567777777777776655677777777777788777765444555544 5777
Q ss_pred ccEEEccCCeeccCchhhhhcccCCcEEeccCCcCCCCCCCCCCCCcccEEEccCccccc------ccCccccccccccc
Q 003893 396 LRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHG------QLKEGTFFNCLTLM 469 (788)
Q Consensus 396 L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~------~~~~~~~~~~~~L~ 469 (788)
|+.|++++|......|.. .++|+.|++++|.+. .+|....+++|+.|.+.++.... .++...+..+++|+
T Consensus 706 L~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~-~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~ 781 (1153)
T PLN03210 706 LYRLNLSGCSRLKSFPDI---STNISWLDLDETAIE-EFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLT 781 (1153)
T ss_pred CCEEeCCCCCCccccccc---cCCcCeeecCCCccc-cccccccccccccccccccchhhccccccccchhhhhccccch
Confidence 777777777654444432 356777777777765 34444456677777665533210 11111233356788
Q ss_pred EEeCCCCccCCCCCccccCCcCCcEEEccCccCcccCcccccCCCCCCEEEccCCcCCccCcccccccchhhhccCCCCC
Q 003893 470 ILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHERYNNGSSL 549 (788)
Q Consensus 470 ~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~ 549 (788)
.|++++|.....+|..++++++|+.|++++|...+.+|... .+++|+.|++++|......|.
T Consensus 782 ~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~----------------- 843 (1153)
T PLN03210 782 RLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPD----------------- 843 (1153)
T ss_pred heeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCccccccc-----------------
Confidence 88888887666777778888888888888876444556554 677888888887754322221
Q ss_pred CCcccceeecCCcccCcccccccceEeeecCceecccCCccCCCceEECCCCcccccCcccccccccCCeEeCCCCCCCC
Q 003893 550 QPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAG 629 (788)
Q Consensus 550 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 629 (788)
.+.+|+.|+|++|.++ .+|..+..+++|+.|+|++|+-..
T Consensus 844 ---------------------------------------~~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~ 883 (1153)
T PLN03210 844 ---------------------------------------ISTNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQ 883 (1153)
T ss_pred ---------------------------------------cccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcC
Confidence 2237888888888887 567788888889999988844333
Q ss_pred CCCcccCCCCCCCeeeCCCcc
Q 003893 630 PIPSTFSNLRNIESLDLSYNK 650 (788)
Q Consensus 630 ~~~~~~~~l~~L~~L~Ls~N~ 650 (788)
.+|..+..+++|+.+++++|.
T Consensus 884 ~l~~~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 884 RVSLNISKLKHLETVDFSDCG 904 (1153)
T ss_pred ccCcccccccCCCeeecCCCc
Confidence 566677788888888888885
No 14
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.89 E-value=1.2e-21 Score=235.17 Aligned_cols=340 Identities=21% Similarity=0.231 Sum_probs=215.7
Q ss_pred hhhhhcCCCCcEEEeeCCcC------CCCCCccccCCC-CCCEEEccCCcCCCccchHHhhCCCCCcEEEccccccCccc
Q 003893 266 LEIGDILSRLTVFNISMNAL------DGSIPSSFGNMN-FLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHM 338 (788)
Q Consensus 266 ~~~~~~~~~L~~L~L~~n~l------~~~~~~~~~~l~-~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~l~~n~i~~~~ 338 (788)
...+..+++|+.|.+..+.. ...+|..+..++ +|+.|.+.++.+. .+|..+ ...+|++|++++|.+...
T Consensus 551 ~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f--~~~~L~~L~L~~s~l~~L- 626 (1153)
T PLN03210 551 ENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF--RPENLVKLQMQGSKLEKL- 626 (1153)
T ss_pred HHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC--CccCCcEEECcCcccccc-
Confidence 33444566777777755432 123445555543 4777777777766 666655 256777777777776543
Q ss_pred cccccCCCccCceeccCccCcccCCccCCCCCCCcEEEcccCcCCCCCCccccCCCCccEEEccCCeeccCchhhhhccc
Q 003893 339 FSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLR 418 (788)
Q Consensus 339 ~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~ 418 (788)
+..+..+++|+.|+++++.....+|. +..+++|++|++++|.....+|..+..+++|+.|++++|...+.+|..+ +++
T Consensus 627 ~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~ 704 (1153)
T PLN03210 627 WDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLK 704 (1153)
T ss_pred ccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCC
Confidence 34455677777777776654434443 5667777777777766555666667777777777777765444555443 567
Q ss_pred CCcEEeccCCcCCCCCCCCCCCCcccEEEccCcccccccCcccccccccccEEeCCCCccCC-------CCCccccCCcC
Q 003893 419 ILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNG-------NIPDRVDGLSQ 491 (788)
Q Consensus 419 ~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~i~~-------~~~~~~~~l~~ 491 (788)
+|+.|++++|.....+|.. ..+|+.|++++|.+. .+|. . ..+++|++|++.++.... ..+..+...++
T Consensus 705 sL~~L~Lsgc~~L~~~p~~--~~nL~~L~L~~n~i~-~lP~-~-~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~s 779 (1153)
T PLN03210 705 SLYRLNLSGCSRLKSFPDI--STNISWLDLDETAIE-EFPS-N-LRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPS 779 (1153)
T ss_pred CCCEEeCCCCCCccccccc--cCCcCeeecCCCccc-cccc-c-ccccccccccccccchhhccccccccchhhhhcccc
Confidence 7777777777554444432 346677777777654 3443 1 245666666666543211 11112223467
Q ss_pred CcEEEccCccCcccCcccccCCCCCCEEEccCCcCCccCcccccccchhhhccCCCCCCCcccceeecCCcccCcccccc
Q 003893 492 LSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQIL 571 (788)
Q Consensus 492 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 571 (788)
|+.|++++|.....+|..+.++++|+.|++++|...+.+|...
T Consensus 780 L~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~------------------------------------- 822 (1153)
T PLN03210 780 LTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI------------------------------------- 822 (1153)
T ss_pred chheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-------------------------------------
Confidence 7777777777666677777777778888777765433333221
Q ss_pred cceEeeecCceecccCCccCCCceEECCCCcccccCcccccccccCCeEeCCCCCCCCCCCcccCCCCCCCeeeCCCccc
Q 003893 572 ESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKL 651 (788)
Q Consensus 572 ~~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l 651 (788)
.+++|+.|++++|......|.. .++|+.|+|++|.++ .+|..+..+++|+.|++++|+-
T Consensus 823 -----------------~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~ 881 (1153)
T PLN03210 823 -----------------NLESLESLDLSGCSRLRTFPDI---STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNN 881 (1153)
T ss_pred -----------------CccccCEEECCCCCcccccccc---ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCC
Confidence 1237888999888655444442 367889999999988 5677888899999999988544
Q ss_pred CccCchhhhcCCCCcEEecccCc
Q 003893 652 SWKIPYQLVELNTLAVFSVAYNN 674 (788)
Q Consensus 652 ~~~~~~~l~~l~~L~~L~l~~N~ 674 (788)
...+|..+..+++|+.+++++|.
T Consensus 882 L~~l~~~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 882 LQRVSLNISKLKHLETVDFSDCG 904 (1153)
T ss_pred cCccCcccccccCCCeeecCCCc
Confidence 34577777888889999998884
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.84 E-value=4.4e-20 Score=204.69 Aligned_cols=63 Identities=27% Similarity=0.344 Sum_probs=36.1
Q ss_pred CCceEECCCCcccccCcccccccccCCeEeCCCCCCCCCCCcccCCCCCCCeeeCCCcccCccCchhh
Q 003893 592 LLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQL 659 (788)
Q Consensus 592 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l 659 (788)
.|+.|++++|.+++ +|.. ..+|+.|++++|+|+ .+|..+.++++|+.|+|++|++++..+..+
T Consensus 403 ~L~~LdLS~N~Lss-IP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L 465 (788)
T PRK15387 403 ELKELMVSGNRLTS-LPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQAL 465 (788)
T ss_pred CCCEEEccCCcCCC-CCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHH
Confidence 45566666666653 3432 234556666666666 345556666666666666666665555544
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.83 E-value=4e-20 Score=205.03 Aligned_cols=145 Identities=28% Similarity=0.350 Sum_probs=103.5
Q ss_pred cccEEeCCCCccCCCCCccccCCcCCcEEEccCccCcccCcccccCCCCCCEEEccCCcCCccCcccccccchhhhccCC
Q 003893 467 TLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHERYNNG 546 (788)
Q Consensus 467 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~ 546 (788)
+|+.|++++|.+++ +|.. ..+|+.|++++|+++. +|.. .++|+.|++++|.+..+ |.
T Consensus 323 ~L~~L~Ls~N~L~~-LP~l---p~~Lq~LdLS~N~Ls~-LP~l---p~~L~~L~Ls~N~L~~L-P~-------------- 379 (788)
T PRK15387 323 ELCKLWAYNNQLTS-LPTL---PSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLTSL-PA-------------- 379 (788)
T ss_pred cccccccccCcccc-cccc---ccccceEecCCCccCC-CCCC---CcccceehhhccccccC-cc--------------
Confidence 35566666666653 3321 2467777777777763 3332 24667777777777632 21
Q ss_pred CCCCCcccceeecCCcccCcccccccceEeeecCceecccCCccCCCceEECCCCcccccCcccccccccCCeEeCCCCC
Q 003893 547 SSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNN 626 (788)
Q Consensus 547 ~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~ 626 (788)
.|.+|+.|++++|.+++ +|.. .++|+.|++++|+
T Consensus 380 ------------------------------------------l~~~L~~LdLs~N~Lt~-LP~l---~s~L~~LdLS~N~ 413 (788)
T PRK15387 380 ------------------------------------------LPSGLKELIVSGNRLTS-LPVL---PSELKELMVSGNR 413 (788)
T ss_pred ------------------------------------------cccccceEEecCCcccC-CCCc---ccCCCEEEccCCc
Confidence 12368889999999884 4433 3689999999999
Q ss_pred CCCCCCcccCCCCCCCeeeCCCcccCccCchhhhcCCCCcEEecccCcCcccCCCCccc
Q 003893 627 LAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSGKIPERAAQ 685 (788)
Q Consensus 627 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~ 685 (788)
+++ +|.. ..+|+.|++++|+|+ .+|..+..+++|+.|++++|++++.++..+..
T Consensus 414 Lss-IP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L~~ 467 (788)
T PRK15387 414 LTS-LPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALRE 467 (788)
T ss_pred CCC-CCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHHHH
Confidence 995 5653 357889999999998 68999999999999999999999887775533
No 17
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.72 E-value=1e-17 Score=187.59 Aligned_cols=97 Identities=28% Similarity=0.383 Sum_probs=53.7
Q ss_pred CCcEEEeeCCcCCCCCCccccCCCCCCEEEccCCcCCCccchHHhhCCCCCcEEEccccccCccccccccCCCccCceec
Q 003893 274 RLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQL 353 (788)
Q Consensus 274 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l 353 (788)
+.+.|+++++.++ .+|..+. +.|+.|++++|.++ .+|..++ ++|++|++++|.++.+ +..+ .++|+.|++
T Consensus 179 ~~~~L~L~~~~Lt-sLP~~Ip--~~L~~L~Ls~N~Lt-sLP~~l~---~nL~~L~Ls~N~LtsL-P~~l--~~~L~~L~L 248 (754)
T PRK15370 179 NKTELRLKILGLT-TIPACIP--EQITTLILDNNELK-SLPENLQ---GNIKTLYANSNQLTSI-PATL--PDTIQEMEL 248 (754)
T ss_pred CceEEEeCCCCcC-cCCcccc--cCCcEEEecCCCCC-cCChhhc---cCCCEEECCCCccccC-Chhh--hccccEEEC
Confidence 4566777777666 3444332 45777777777776 6666543 4667777776666543 2222 234556666
Q ss_pred cCccCcccCCccCCCCCCCcEEEcccCcCC
Q 003893 354 EGNHFVGEIPQSLSKCSSLQGLFLSNNSLS 383 (788)
Q Consensus 354 ~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~ 383 (788)
++|.+. .+|..+. ++|+.|++++|++.
T Consensus 249 s~N~L~-~LP~~l~--s~L~~L~Ls~N~L~ 275 (754)
T PRK15370 249 SINRIT-ELPERLP--SALQSLDLFHNKIS 275 (754)
T ss_pred cCCccC-cCChhHh--CCCCEEECcCCccC
Confidence 666555 3333332 24555555555544
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.72 E-value=2.3e-17 Score=184.70 Aligned_cols=159 Identities=25% Similarity=0.341 Sum_probs=74.0
Q ss_pred cCEEEccCCcCcccCChhhhhcCCCCcEEEeeCCcCCCCCCccccCCCCCCEEEccCCcCCCccchHHhhCCCCCcEEEc
Q 003893 250 LRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLAL 329 (788)
Q Consensus 250 L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~l 329 (788)
...|++++++++ .+|..+. ++++.|++++|.++ .+|..+. ++|+.|++++|.++ .+|..+. ++|+.|++
T Consensus 180 ~~~L~L~~~~Lt-sLP~~Ip---~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~---~~L~~L~L 248 (754)
T PRK15370 180 KTELRLKILGLT-TIPACIP---EQITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLT-SIPATLP---DTIQEMEL 248 (754)
T ss_pred ceEEEeCCCCcC-cCCcccc---cCCcEEEecCCCCC-cCChhhc--cCCCEEECCCCccc-cCChhhh---ccccEEEC
Confidence 344555555554 4444332 24555555555555 2333222 35555555555555 4554432 24555555
Q ss_pred cccccCccccccccCCCccCceeccCccCcccCCccCCCCCCCcEEEcccCcCCCCCCccccCCCCccEEEccCCeeccC
Q 003893 330 SNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGP 409 (788)
Q Consensus 330 ~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~ 409 (788)
++|.+..+ +..+ ..+|+.|++++|++. .+|..+. ++|+.|++++|+++. +|..+. ++|+.|++++|.+..
T Consensus 249 s~N~L~~L-P~~l--~s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt~-LP~~lp--~sL~~L~Ls~N~Lt~- 318 (754)
T PRK15370 249 SINRITEL-PERL--PSALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIRT-LPAHLP--SGITHLNVQSNSLTA- 318 (754)
T ss_pred cCCccCcC-ChhH--hCCCCEEECcCCccC-ccccccC--CCCcEEECCCCcccc-Ccccch--hhHHHHHhcCCcccc-
Confidence 55555532 2222 134566666666555 3343332 356666666665552 232221 245555555555542
Q ss_pred chhhhhcccCCcEEeccCCcCC
Q 003893 410 IPLEFCQLRILQILDISDNNIS 431 (788)
Q Consensus 410 ~~~~~~~l~~L~~L~l~~n~~~ 431 (788)
+|..+ .++|+.|++++|.++
T Consensus 319 LP~~l--~~sL~~L~Ls~N~Lt 338 (754)
T PRK15370 319 LPETL--PPGLKTLEAGENALT 338 (754)
T ss_pred CCccc--cccceeccccCCccc
Confidence 22211 134555555555443
No 19
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.69 E-value=2.3e-18 Score=180.28 Aligned_cols=108 Identities=21% Similarity=0.285 Sum_probs=56.4
Q ss_pred CCceEECCCCccccc----CcccccccccCCeEeCCCCCCCCCCCcccC-----CCCCCCeeeCCCcccCc----cCchh
Q 003893 592 LLSGLDLSCNRLIGH----IPPQIGNLTKIQTLNLSHNNLAGPIPSTFS-----NLRNIESLDLSYNKLSW----KIPYQ 658 (788)
Q Consensus 592 ~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~-----~l~~L~~L~Ls~N~l~~----~~~~~ 658 (788)
+|+.|++++|.+++. .+..+..+++|++|++++|.+++.....+. ..+.|++|++++|.++. .+...
T Consensus 194 ~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~ 273 (319)
T cd00116 194 NLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEV 273 (319)
T ss_pred CCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHH
Confidence 455566665555422 223344556666666666666542111111 23567777777776651 22334
Q ss_pred hhcCCCCcEEecccCcCccc----CCCCcccc-CCCCcCCcCCCCC
Q 003893 659 LVELNTLAVFSVAYNNLSGK----IPERAAQF-ATFNESSYEGNPF 699 (788)
Q Consensus 659 l~~l~~L~~L~l~~N~l~~~----~~~~~~~~-~~l~~~~~~~Np~ 699 (788)
+..+++|+.+++++|+++.. ....+..+ ..+..+++.+|||
T Consensus 274 ~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (319)
T cd00116 274 LAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDSF 319 (319)
T ss_pred HhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCCC
Confidence 44556677777777776643 22222223 4556666666665
No 20
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.69 E-value=1.1e-17 Score=175.25 Aligned_cols=260 Identities=22% Similarity=0.254 Sum_probs=132.8
Q ss_pred EEEcCCcccccC-ccchhHhhhcCCCCCEEeCCCCCCCCc-ccCCCCccCCCCCCCEEEcCCCCCCC------CccHhhh
Q 003893 23 ELYMDDARIALN-TSFLQIIGESMPSIQYLSLSNSSVSNN-SRTLDQGLCPLVHLQELHMADNDLRG------SLPWCLA 94 (788)
Q Consensus 23 ~L~L~~~~~~~~-~~~~~~~~~~l~~L~~L~L~~~~l~~~-~~~l~~~l~~l~~L~~L~L~~n~i~~------~~~~~~~ 94 (788)
.|+|.+ +.+. +.....+.. +.+|++|+++++.++.. ...++..+...++|++|+++++.+.. ..+..+.
T Consensus 2 ~l~L~~--~~l~~~~~~~~~~~-l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~ 78 (319)
T cd00116 2 QLSLKG--ELLKTERATELLPK-LLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLT 78 (319)
T ss_pred cccccc--CcccccchHHHHHH-HhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHH
Confidence 355555 4443 223333444 66788888888776432 11222445666777888887776652 2344566
Q ss_pred cCCCCCEEeCCCCcCcCCCChhhhcCCCC---CCEEEcCCCcccCccC---ccccCCC-CCccEEEccCCccchhhhccc
Q 003893 95 NMTSLRILDVSSNQLIGSISSSPLIHLTS---IEDLILSDNHFQIPIS---LEPLFNH-SRLKIFDAENNEINAEIIESH 167 (788)
Q Consensus 95 ~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~---L~~L~l~~n~~~~~~~---~~~l~~l-~~L~~L~l~~n~~~~~~~~~~ 167 (788)
.+++|++|++++|.+.+..+. .+..+.+ |++|++++|++.+... ...+..+ ++|+.|++++|.+++....
T Consensus 79 ~~~~L~~L~l~~~~~~~~~~~-~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~-- 155 (319)
T cd00116 79 KGCGLQELDLSDNALGPDGCG-VLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCE-- 155 (319)
T ss_pred hcCceeEEEccCCCCChhHHH-HHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHH--
Confidence 777888888887776643333 4444444 7777777776652100 0123334 5666666666665422111
Q ss_pred cCCCCcccccEEEccCCCcCCccCCccccCCCCCcEEEecCCCCCccCchHH---hhcCCCCCEEEccCCcccCcC----
Q 003893 168 SLTTPNFQLQSLLLSSGYRDGITFPKFLYNQHDLEYVRLSHIKMNEEFPNWL---LENNTKLRQLSLVNDSLVGPF---- 240 (788)
Q Consensus 168 ~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~---~~~l~~L~~L~l~~~~~~~~~---- 240 (788)
.++..+..+.+|++|++++|.+++.....+ +..+++|++|++++|.+.+..
T Consensus 156 ----------------------~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l 213 (319)
T cd00116 156 ----------------------ALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASAL 213 (319)
T ss_pred ----------------------HHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHH
Confidence 012233444556666666666654322221 123346666666666554321
Q ss_pred ccCccCCCCcCEEEccCCcCcccCChhhhhcC----CCCcEEEeeCCcCCC----CCCccccCCCCCCEEEccCCcCC
Q 003893 241 RLPIHSHKQLRLLDVSKNNFQGHIPLEIGDIL----SRLTVFNISMNALDG----SIPSSFGNMNFLQFLDLSNNQLT 310 (788)
Q Consensus 241 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~----~~L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~L~~n~i~ 310 (788)
...+..+++|++|++++|.+++.....+...+ +.|++|++++|.++. .+...+..+++|+++++++|.+.
T Consensus 214 ~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~ 291 (319)
T cd00116 214 AETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFG 291 (319)
T ss_pred HHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCc
Confidence 12234455666666666655532222222221 455555555555541 11223334455555555555554
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.58 E-value=5.1e-17 Score=139.52 Aligned_cols=87 Identities=28% Similarity=0.452 Sum_probs=52.8
Q ss_pred CCCCCcccEEEccCcccccccCcccccccccccEEeCCCCccCCCCCccccCCcCCcEEEccCccCcccCcccccCCCCC
Q 003893 437 CYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQL 516 (788)
Q Consensus 437 ~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 516 (788)
.+.+..++.|.+++|+++ .+|+ .+..+.+|+.|++++|++. ..|..++.++.|+.|++.-|++. ..|..|+.+|.|
T Consensus 29 Lf~~s~ITrLtLSHNKl~-~vpp-nia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~l 104 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHNKLT-VVPP-NIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPAL 104 (264)
T ss_pred ccchhhhhhhhcccCcee-ecCC-cHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchh
Confidence 333444444445555444 2333 4556666677777777766 45566666677777777766665 566667777777
Q ss_pred CEEEccCCcCC
Q 003893 517 QLLDLSNNNLH 527 (788)
Q Consensus 517 ~~L~L~~n~l~ 527 (788)
+.||+.+|++.
T Consensus 105 evldltynnl~ 115 (264)
T KOG0617|consen 105 EVLDLTYNNLN 115 (264)
T ss_pred hhhhccccccc
Confidence 77777666654
No 22
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.56 E-value=7.6e-17 Score=138.48 Aligned_cols=181 Identities=29% Similarity=0.456 Sum_probs=146.3
Q ss_pred cccccccccEEeCCCCccCCCCCccccCCcCCcEEEccCccCcccCcccccCCCCCCEEEccCCcCCccCcccccccchh
Q 003893 461 TFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLH 540 (788)
Q Consensus 461 ~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~ 540 (788)
.+.++..++.|.+++|+++ .+|..+..+.+|+.|++.+|++. ..|..++.++.|+.|+++-|++. ..|.-|+...
T Consensus 28 gLf~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p-- 102 (264)
T KOG0617|consen 28 GLFNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFP-- 102 (264)
T ss_pred cccchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCc--
Confidence 3455677888999999998 56667888999999999999998 78889999999999999988875 4555555443
Q ss_pred hhccCCCCCCCcccceeecCCcccCcccccccceEeeecCceecccCCccCCCceEECCCCcccc-cCcccccccccCCe
Q 003893 541 ERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIG-HIPPQIGNLTKIQT 619 (788)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~ 619 (788)
.|+.|||+.|++.+ ..|..|..++.|+.
T Consensus 103 ---------------------------------------------------~levldltynnl~e~~lpgnff~m~tlra 131 (264)
T KOG0617|consen 103 ---------------------------------------------------ALEVLDLTYNNLNENSLPGNFFYMTTLRA 131 (264)
T ss_pred ---------------------------------------------------hhhhhhccccccccccCCcchhHHHHHHH
Confidence 78889999888874 56888888999999
Q ss_pred EeCCCCCCCCCCCcccCCCCCCCeeeCCCcccCccCchhhhcCCCCcEEecccCcCcccCCCCccccCCC---CcCCcCC
Q 003893 620 LNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSGKIPERAAQFATF---NESSYEG 696 (788)
Q Consensus 620 L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l---~~~~~~~ 696 (788)
|+|++|.+. .+|..++++++|+.|.+..|.+. ..|..++.+..|+.|.+.+|+++...|+ ++++.-. .......
T Consensus 132 lyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~vlppe-l~~l~l~~~k~v~r~E~ 208 (264)
T KOG0617|consen 132 LYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLTVLPPE-LANLDLVGNKQVMRMEE 208 (264)
T ss_pred HHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceeeecChh-hhhhhhhhhHHHHhhhh
Confidence 999999998 77888999999999999999987 6899999999999999999999976665 3433221 2334556
Q ss_pred CCCC
Q 003893 697 NPFL 700 (788)
Q Consensus 697 Np~~ 700 (788)
|||.
T Consensus 209 NPwv 212 (264)
T KOG0617|consen 209 NPWV 212 (264)
T ss_pred CCCC
Confidence 7775
No 23
>PLN03150 hypothetical protein; Provisional
Probab=99.47 E-value=9.4e-14 Score=155.69 Aligned_cols=114 Identities=34% Similarity=0.585 Sum_probs=105.1
Q ss_pred CCceEECCCCcccccCcccccccccCCeEeCCCCCCCCCCCcccCCCCCCCeeeCCCcccCccCchhhhcCCCCcEEecc
Q 003893 592 LLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVA 671 (788)
Q Consensus 592 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~ 671 (788)
.++.|+|++|.+.+.+|..+..+++|+.|+|++|.+.+.+|..++.+++|+.|+|++|++++.+|..+..+++|+.|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 37889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcCcccCCCCcccc-CCCCcCCcCCCCCCCCCCC
Q 003893 672 YNNLSGKIPERAAQF-ATFNESSYEGNPFLCGPPL 705 (788)
Q Consensus 672 ~N~l~~~~~~~~~~~-~~l~~~~~~~Np~~C~~~~ 705 (788)
+|+++|.+|..+... ..+..+++.+|+..|+++.
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~ 533 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPG 533 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCccccCCCC
Confidence 999999999877553 4556788999999998754
No 24
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.13 E-value=1.3e-11 Score=122.80 Aligned_cols=164 Identities=21% Similarity=0.185 Sum_probs=91.7
Q ss_pred CCCCCCEEEcCCCCCCCCcc-HhhhcCCCCCEEeCCCCcCcCCCChh-hhcCCCCCCEEEcCCCcccCccCccccCCCCC
Q 003893 71 PLVHLQELHMADNDLRGSLP-WCLANMTSLRILDVSSNQLIGSISSS-PLIHLTSIEDLILSDNHFQIPISLEPLFNHSR 148 (788)
Q Consensus 71 ~l~~L~~L~L~~n~i~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~-~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~ 148 (788)
++.+|+++.|.++.+..... +....|++++.||||+|-+..--+.. ...++++|+.|+++.|.+........-.
T Consensus 119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~---- 194 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTL---- 194 (505)
T ss_pred hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchh----
Confidence 46667777777776653221 35566777777777777554221211 2345677777777776654222211111
Q ss_pred ccEEEccCCccchhhhccccCCCCcccccEEEccCCCcCCccCCccccCCCCCcEEEecCCCCCccCchHHhhcCCCCCE
Q 003893 149 LKIFDAENNEINAEIIESHSLTTPNFQLQSLLLSSGYRDGITFPKFLYNQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQ 228 (788)
Q Consensus 149 L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~ 228 (788)
.++.|+.|.++.|.++.....++...+|+|+.
T Consensus 195 ------------------------------------------------~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~ 226 (505)
T KOG3207|consen 195 ------------------------------------------------LLSHLKQLVLNSCGLSWKDVQWILLTFPSLEV 226 (505)
T ss_pred ------------------------------------------------hhhhhheEEeccCCCCHHHHHHHHHhCCcHHH
Confidence 23445666666666655555555667777777
Q ss_pred EEccCCcccCcCccCccCCCCcCEEEccCCcCcccCCh-hhhhcCCCCcEEEeeCCcCCC
Q 003893 229 LSLVNDSLVGPFRLPIHSHKQLRLLDVSKNNFQGHIPL-EIGDILSRLTVFNISMNALDG 287 (788)
Q Consensus 229 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~~~~~~L~~L~L~~n~l~~ 287 (788)
|++..|............+..|++|||++|.+. ..+. ..-..++.|+.|+++.+.+..
T Consensus 227 L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li-~~~~~~~~~~l~~L~~Lnls~tgi~s 285 (505)
T KOG3207|consen 227 LYLEANEIILIKATSTKILQTLQELDLSNNNLI-DFDQGYKVGTLPGLNQLNLSSTGIAS 285 (505)
T ss_pred hhhhcccccceecchhhhhhHHhhccccCCccc-ccccccccccccchhhhhccccCcch
Confidence 777777533333334445566777777777665 2221 112235666666666666653
No 25
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.13 E-value=3.2e-12 Score=130.93 Aligned_cols=156 Identities=31% Similarity=0.478 Sum_probs=87.2
Q ss_pred cccccccccEEeCCCCccCCCCCccccCCcCCcEEEccCccCcccCcccccCCCCCCEEEccCCcCCccCcccccccchh
Q 003893 461 TFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLH 540 (788)
Q Consensus 461 ~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~ 540 (788)
.+..+..|+.+.+..|.+. .+|..+..+..|+.|+++.|++. ..|..++.+| |+.|-+++|+++..++ ..+..
T Consensus 93 ~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~sNNkl~~lp~-~ig~~--- 165 (722)
T KOG0532|consen 93 EACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIVSNNKLTSLPE-EIGLL--- 165 (722)
T ss_pred HHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEEEecCccccCCc-ccccc---
Confidence 3444445555555555555 45555555666666666666655 4454555444 5566666665543221 11111
Q ss_pred hhccCCCCCCCcccceeecCCcccCcccccccceEeeecCceecccCCccCCCceEECCCCcccccCcccccccccCCeE
Q 003893 541 ERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTL 620 (788)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 620 (788)
..|..||.+.|.+. ..|..++++.+|+.|
T Consensus 166 --------------------------------------------------~tl~~ld~s~nei~-slpsql~~l~slr~l 194 (722)
T KOG0532|consen 166 --------------------------------------------------PTLAHLDVSKNEIQ-SLPSQLGYLTSLRDL 194 (722)
T ss_pred --------------------------------------------------hhHHHhhhhhhhhh-hchHHhhhHHHHHHH
Confidence 14555666666665 445556666666666
Q ss_pred eCCCCCCCCCCCcccCCCCCCCeeeCCCcccCccCchhhhcCCCCcEEecccCcCcc
Q 003893 621 NLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSG 677 (788)
Q Consensus 621 ~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~ 677 (788)
++..|++.. .|..+..| .|.+||+|.|+++ .+|..|.+++.|++|.|.+|+++.
T Consensus 195 ~vrRn~l~~-lp~El~~L-pLi~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLqS 248 (722)
T KOG0532|consen 195 NVRRNHLED-LPEELCSL-PLIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQS 248 (722)
T ss_pred HHhhhhhhh-CCHHHhCC-ceeeeecccCcee-ecchhhhhhhhheeeeeccCCCCC
Confidence 666666663 33344432 4566666666666 566666666666666666666663
No 26
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.13 E-value=1.9e-12 Score=132.54 Aligned_cols=174 Identities=28% Similarity=0.465 Sum_probs=150.1
Q ss_pred ccccEEeCCCCccCCCCCccccCCcCCcEEEccCccCcccCcccccCCCCCCEEEccCCcCCccCcccccccchhhhccC
Q 003893 466 LTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHERYNN 545 (788)
Q Consensus 466 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~ 545 (788)
.--...|++.|++. .+|..+..+..|+.+.+..|.+. .+|..+..+..|+.+||+.|+++..++ .+..+
T Consensus 75 tdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS~lp~-~lC~l-------- 143 (722)
T KOG0532|consen 75 TDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLSHLPD-GLCDL-------- 143 (722)
T ss_pred cchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhhcCCh-hhhcC--------
Confidence 33456899999998 78888899999999999999998 788899999999999999999974433 22222
Q ss_pred CCCCCCcccceeecCCcccCcccccccceEeeecCceecccCCccCCCceEECCCCcccccCcccccccccCCeEeCCCC
Q 003893 546 GSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHN 625 (788)
Q Consensus 546 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N 625 (788)
-|+.|-+++|+++ .+|+.++.+..|..||.+.|
T Consensus 144 ----------------------------------------------pLkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~n 176 (722)
T KOG0532|consen 144 ----------------------------------------------PLKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKN 176 (722)
T ss_pred ----------------------------------------------cceeEEEecCccc-cCCcccccchhHHHhhhhhh
Confidence 3889999999998 77888999999999999999
Q ss_pred CCCCCCCcccCCCCCCCeeeCCCcccCccCchhhhcCCCCcEEecccCcCcccCCCCccccCCCCcCCcCCCCCCC
Q 003893 626 NLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSGKIPERAAQFATFNESSYEGNPFLC 701 (788)
Q Consensus 626 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~~~~~~Np~~C 701 (788)
.+. .+|..++.+.+|+.|.++.|++. ..|+.+..++ |..||+|.|+++ .+|..|..+..+..+.++.||..-
T Consensus 177 ei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~Lp-Li~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLqS 248 (722)
T KOG0532|consen 177 EIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSLP-LIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQS 248 (722)
T ss_pred hhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCCc-eeeeecccCcee-ecchhhhhhhhheeeeeccCCCCC
Confidence 999 56777999999999999999998 5677777655 899999999999 578778999999999999999874
No 27
>PLN03150 hypothetical protein; Provisional
Probab=99.12 E-value=2.2e-10 Score=128.66 Aligned_cols=113 Identities=33% Similarity=0.502 Sum_probs=101.3
Q ss_pred CCCEEEccCCcCCccCcccccccchhhhccCCCCCCCcccceeecCCcccCcccccccceEeeecCceecccCCccCCCc
Q 003893 515 QLQLLDLSNNNLHGHIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLS 594 (788)
Q Consensus 515 ~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~ 594 (788)
.++.|+|++|.+.+.+|..+..+. +|+
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~-----------------------------------------------------~L~ 445 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLR-----------------------------------------------------HLQ 445 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCC-----------------------------------------------------CCC
Confidence 477899999999988888776665 899
Q ss_pred eEECCCCcccccCcccccccccCCeEeCCCCCCCCCCCcccCCCCCCCeeeCCCcccCccCchhhhcC-CCCcEEecccC
Q 003893 595 GLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVEL-NTLAVFSVAYN 673 (788)
Q Consensus 595 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l-~~L~~L~l~~N 673 (788)
.|+|++|.+.+.+|..++.+++|+.|+|++|++++.+|+.++++++|++|+|++|++++.+|..+... .++..+++.+|
T Consensus 446 ~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N 525 (623)
T PLN03150 446 SINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDN 525 (623)
T ss_pred EEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhccccCceEEecCC
Confidence 99999999999999999999999999999999999999999999999999999999999999988764 46788999999
Q ss_pred cCcccCC
Q 003893 674 NLSGKIP 680 (788)
Q Consensus 674 ~l~~~~~ 680 (788)
+..|..|
T Consensus 526 ~~lc~~p 532 (623)
T PLN03150 526 AGLCGIP 532 (623)
T ss_pred ccccCCC
Confidence 8766444
No 28
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.09 E-value=2.5e-11 Score=114.37 Aligned_cols=59 Identities=42% Similarity=0.464 Sum_probs=38.2
Q ss_pred ccccEEeCCCCccCCCCCccccCCcCCcEEEccCccCcccCcccccCCCCCCEEEccCCcCC
Q 003893 466 LTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLH 527 (788)
Q Consensus 466 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 527 (788)
..|+++|+|+|.|+ .+.++..-.|.++.|++++|.++.. ..+..+++|+.||+++|.++
T Consensus 284 q~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls 342 (490)
T KOG1259|consen 284 QELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLA 342 (490)
T ss_pred hhhhhccccccchh-hhhhhhhhccceeEEeccccceeee--hhhhhcccceEeecccchhH
Confidence 34667777777776 4455556667777777777776622 23666677777777777665
No 29
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.09 E-value=1.1e-10 Score=106.52 Aligned_cols=132 Identities=22% Similarity=0.310 Sum_probs=46.0
Q ss_pred CCCCCCccEEEcCCcccccCccchhHhhhcCCCCCEEeCCCCCCCCcccCCCCccCCCCCCCEEEcCCCCCCCCccHhhh
Q 003893 15 FPHFKSLKELYMDDARIALNTSFLQIIGESMPSIQYLSLSNSSVSNNSRTLDQGLCPLVHLQELHMADNDLRGSLPWCLA 94 (788)
Q Consensus 15 l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~l~~~l~~l~~L~~L~L~~n~i~~~~~~~~~ 94 (788)
+.+..++++|+|++ +.+... ..++..+.+|+.|++++|.|... +.+..+++|++|++++|++++..+....
T Consensus 15 ~~n~~~~~~L~L~~--n~I~~I--e~L~~~l~~L~~L~Ls~N~I~~l-----~~l~~L~~L~~L~L~~N~I~~i~~~l~~ 85 (175)
T PF14580_consen 15 YNNPVKLRELNLRG--NQISTI--ENLGATLDKLEVLDLSNNQITKL-----EGLPGLPRLKTLDLSNNRISSISEGLDK 85 (175)
T ss_dssp -------------------------S--TT-TT--EEE-TTS--S-------TT----TT--EEE--SS---S-CHHHHH
T ss_pred cccccccccccccc--cccccc--cchhhhhcCCCEEECCCCCCccc-----cCccChhhhhhcccCCCCCCccccchHH
Confidence 44556678888888 333222 22332266788888888877643 3567778888888888888754332234
Q ss_pred cCCCCCEEeCCCCcCcCCCChhhhcCCCCCCEEEcCCCcccCccCc--cccCCCCCccEEEcc
Q 003893 95 NMTSLRILDVSSNQLIGSISSSPLIHLTSIEDLILSDNHFQIPISL--EPLFNHSRLKIFDAE 155 (788)
Q Consensus 95 ~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~--~~l~~l~~L~~L~l~ 155 (788)
.+++|++|++++|+|...-....+..+++|++|++.+|+++..... ..+..+++|+.||-.
T Consensus 86 ~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 86 NLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQ 148 (175)
T ss_dssp H-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTE
T ss_pred hCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCE
Confidence 6788888888888776433333567788888888888877633221 134457777777643
No 30
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.05 E-value=2.1e-11 Score=117.92 Aligned_cols=92 Identities=21% Similarity=0.204 Sum_probs=43.7
Q ss_pred ccCCCCCcEEEecCCCCCccCc---hHHhhcCCCCCEEEccCCcccCcC----ccCccCCCCcCEEEccCCcCcccCChh
Q 003893 195 LYNQHDLEYVRLSHIKMNEEFP---NWLLENNTKLRQLSLVNDSLVGPF----RLPIHSHKQLRLLDVSKNNFQGHIPLE 267 (788)
Q Consensus 195 l~~~~~L~~L~l~~~~~~~~~~---~~~~~~l~~L~~L~l~~~~~~~~~----~~~~~~~~~L~~L~l~~n~l~~~~~~~ 267 (788)
+..++.|+.+.+..|.+..... ..-+..|++|+.|+|.+|.++... ...+..++.|++|++++|.+.......
T Consensus 181 ~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a 260 (382)
T KOG1909|consen 181 FQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIA 260 (382)
T ss_pred HHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHH
Confidence 3444566666666665533222 111345666666666666554321 233444555555555555554332222
Q ss_pred hh----hcCCCCcEEEeeCCcCC
Q 003893 268 IG----DILSRLTVFNISMNALD 286 (788)
Q Consensus 268 ~~----~~~~~L~~L~L~~n~l~ 286 (788)
+. ...|.|++|.+.+|.++
T Consensus 261 ~~~al~~~~p~L~vl~l~gNeIt 283 (382)
T KOG1909|consen 261 FVDALKESAPSLEVLELAGNEIT 283 (382)
T ss_pred HHHHHhccCCCCceeccCcchhH
Confidence 22 12344555555555444
No 31
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.05 E-value=1.1e-10 Score=106.45 Aligned_cols=108 Identities=28% Similarity=0.406 Sum_probs=46.0
Q ss_pred CCCCCEEeCCCCCCCCcccCCCCccC-CCCCCCEEEcCCCCCCCCccHhhhcCCCCCEEeCCCCcCcCCCChhhh-cCCC
Q 003893 45 MPSIQYLSLSNSSVSNNSRTLDQGLC-PLVHLQELHMADNDLRGSLPWCLANMTSLRILDVSSNQLIGSISSSPL-IHLT 122 (788)
Q Consensus 45 l~~L~~L~L~~~~l~~~~~~l~~~l~-~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l-~~l~ 122 (788)
...+|.|+|+++.|..+ +.++ .+.+|+.|+|++|.++.. +.+..+++|++|++++|.|+ .+.. .+ ..++
T Consensus 18 ~~~~~~L~L~~n~I~~I-----e~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~-~i~~-~l~~~lp 88 (175)
T PF14580_consen 18 PVKLRELNLRGNQISTI-----ENLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRIS-SISE-GLDKNLP 88 (175)
T ss_dssp -----------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS----S-CH-HHHHH-T
T ss_pred ccccccccccccccccc-----cchhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCC-cccc-chHHhCC
Confidence 45689999999998654 3465 588999999999999865 35888999999999999998 5654 44 4699
Q ss_pred CCCEEEcCCCcccCccCccccCCCCCccEEEccCCccch
Q 003893 123 SIEDLILSDNHFQIPISLEPLFNHSRLKIFDAENNEINA 161 (788)
Q Consensus 123 ~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~~~~ 161 (788)
+|++|++++|++........++.+++|+.|++.+|++..
T Consensus 89 ~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~ 127 (175)
T PF14580_consen 89 NLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCE 127 (175)
T ss_dssp T--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGG
T ss_pred cCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccc
Confidence 999999999999866666778899999999999999864
No 32
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.04 E-value=2.6e-10 Score=122.78 Aligned_cols=199 Identities=33% Similarity=0.454 Sum_probs=107.1
Q ss_pred EEEccCCeeccCchhhhhcccCCcEEeccCCcCCCCCCCCCCCCcccEEEccCcccccccCcccccccccccEEeCCCCc
Q 003893 398 HIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNH 477 (788)
Q Consensus 398 ~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~ 477 (788)
.+....+.+... .......+.++.|++.+|.++...+...... ++|+.|++++|.
T Consensus 97 ~l~~~~~~~~~~-~~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~------------------------~nL~~L~l~~N~ 151 (394)
T COG4886 97 SLDLNLNRLRSN-ISELLELTNLTSLDLDNNNITDIPPLIGLLK------------------------SNLKELDLSDNK 151 (394)
T ss_pred eeeccccccccC-chhhhcccceeEEecCCcccccCccccccch------------------------hhcccccccccc
Confidence 466666655322 2233444667777777777763333222221 255566666665
Q ss_pred cCCCCCccccCCcCCcEEEccCccCcccCcccccCCCCCCEEEccCCcCCccCcccccccchhhhccCCCCCCCccccee
Q 003893 478 LNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHERYNNGSSLQPFETSFV 557 (788)
Q Consensus 478 i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 557 (788)
+. .+|..+..+++|+.|++++|++. .++......+.|+.|++++|++....+..
T Consensus 152 i~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L~ls~N~i~~l~~~~------------------------ 205 (394)
T COG4886 152 IE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNKISDLPPEI------------------------ 205 (394)
T ss_pred hh-hhhhhhhccccccccccCCchhh-hhhhhhhhhhhhhheeccCCccccCchhh------------------------
Confidence 55 33344555666666666666665 33333335556666666666655332211
Q ss_pred ecCCcccCcccccccceEeeecCceecccCCccCCCceEECCCCcccccCcccccccccCCeEeCCCCCCCCCCCcccCC
Q 003893 558 IMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSN 637 (788)
Q Consensus 558 ~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 637 (788)
..+..|++|++++|.+. ..+..+..+.++..|.+++|++.. .+..++.
T Consensus 206 ------------------------------~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~~-~~~~~~~ 253 (394)
T COG4886 206 ------------------------------ELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLED-LPESIGN 253 (394)
T ss_pred ------------------------------hhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceeee-ccchhcc
Confidence 01124556666666433 334455666666666666666652 2455566
Q ss_pred CCCCCeeeCCCcccCccCchhhhcCCCCcEEecccCcCcccCCC
Q 003893 638 LRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSGKIPE 681 (788)
Q Consensus 638 l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~ 681 (788)
++++++|++++|.++...+ +..+.+++.|++++|.++...|.
T Consensus 254 l~~l~~L~~s~n~i~~i~~--~~~~~~l~~L~~s~n~~~~~~~~ 295 (394)
T COG4886 254 LSNLETLDLSNNQISSISS--LGSLTNLRELDLSGNSLSNALPL 295 (394)
T ss_pred ccccceecccccccccccc--ccccCccCEEeccCccccccchh
Confidence 6666666666666663332 55666666666666666655444
No 33
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.00 E-value=4.6e-11 Score=118.86 Aligned_cols=163 Identities=26% Similarity=0.226 Sum_probs=91.4
Q ss_pred hcCCCCCEEEccCCcccCcCc-cCccCCCCcCEEEccCCcCcccCC-hhhhhcCCCCcEEEeeCCcCCCCCCc-cccCCC
Q 003893 221 ENNTKLRQLSLVNDSLVGPFR-LPIHSHKQLRLLDVSKNNFQGHIP-LEIGDILSRLTVFNISMNALDGSIPS-SFGNMN 297 (788)
Q Consensus 221 ~~l~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~~~~~L~~L~L~~n~l~~~~~~-~~~~l~ 297 (788)
.++.+|+++.|.++....... .....|++++.||++.|-+....+ ..+.+.+|+|+.|+++.|++..-... .-..++
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~ 197 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS 197 (505)
T ss_pred hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence 456677777777766543322 244567777888888776653221 22344577777777777776522111 123556
Q ss_pred CCCEEEccCCcCCCccchHHhhCCCCCcEEEccccccCccccccccCCCccCceeccCccCcccCC-ccCCCCCCCcEEE
Q 003893 298 FLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIP-QSLSKCSSLQGLF 376 (788)
Q Consensus 298 ~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~l~~L~~L~ 376 (788)
+|+.|.++.|.++-.--......+|+|+.|++..|...........-+..|++|+|++|.+..... .....++.|+.|+
T Consensus 198 ~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Ln 277 (505)
T KOG3207|consen 198 HLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLN 277 (505)
T ss_pred hhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhh
Confidence 777777777776522222233346777777777764332333333345666777777666653211 2344556666666
Q ss_pred cccCcCC
Q 003893 377 LSNNSLS 383 (788)
Q Consensus 377 l~~n~l~ 383 (788)
++.+.+.
T Consensus 278 ls~tgi~ 284 (505)
T KOG3207|consen 278 LSSTGIA 284 (505)
T ss_pred ccccCcc
Confidence 6666554
No 34
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.99 E-value=9e-11 Score=110.74 Aligned_cols=84 Identities=30% Similarity=0.273 Sum_probs=45.6
Q ss_pred CCceEECCCCcccccCcccccccccCCeEeCCCCCCCCCCCcccCCCCCCCeeeCCCcccCccC-chhhhcCCCCcEEec
Q 003893 592 LLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKI-PYQLVELNTLAVFSV 670 (788)
Q Consensus 592 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-~~~l~~l~~L~~L~l 670 (788)
+|+.||||+|.++.. ..+-..+-+.+.|.|++|.|... ++++.+-+|..||+++|+|.... -..+++++-|+.+.+
T Consensus 330 ~L~~LDLS~N~Ls~~-~Gwh~KLGNIKtL~La~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L 406 (490)
T KOG1259|consen 330 QLQLLDLSGNLLAEC-VGWHLKLGNIKTLKLAQNKIETL--SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRL 406 (490)
T ss_pred cceEeecccchhHhh-hhhHhhhcCEeeeehhhhhHhhh--hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhh
Confidence 566666666666522 22333455666666666666522 34555566666666666664221 224555566666666
Q ss_pred ccCcCccc
Q 003893 671 AYNNLSGK 678 (788)
Q Consensus 671 ~~N~l~~~ 678 (788)
.+|++.+.
T Consensus 407 ~~NPl~~~ 414 (490)
T KOG1259|consen 407 TGNPLAGS 414 (490)
T ss_pred cCCCcccc
Confidence 66666543
No 35
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.96 E-value=1e-09 Score=118.13 Aligned_cols=60 Identities=32% Similarity=0.470 Sum_probs=25.9
Q ss_pred CccCceeccCccCcccCCccCCCCC-CCcEEEcccCcCCCCCCccccCCCCccEEEccCCeec
Q 003893 346 TNLIWLQLEGNHFVGEIPQSLSKCS-SLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIE 407 (788)
Q Consensus 346 ~~L~~L~l~~n~~~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~ 407 (788)
+.++.|++.+|.+. .++....... +|+.|++++|.+. .+|..+..+++|+.|++++|++.
T Consensus 116 ~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~ 176 (394)
T COG4886 116 TNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS 176 (394)
T ss_pred cceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCchhh
Confidence 44555555555554 2233233332 4555555555444 22223344444444444444443
No 36
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.95 E-value=1.4e-10 Score=112.27 Aligned_cols=235 Identities=18% Similarity=0.165 Sum_probs=141.8
Q ss_pred cccCCCCCcEEEecCCCCCccCchHH---hhcCCCCCEEEccCCcccCcC-----------ccCccCCCCcCEEEccCCc
Q 003893 194 FLYNQHDLEYVRLSHIKMNEEFPNWL---LENNTKLRQLSLVNDSLVGPF-----------RLPIHSHKQLRLLDVSKNN 259 (788)
Q Consensus 194 ~l~~~~~L~~L~l~~~~~~~~~~~~~---~~~l~~L~~L~l~~~~~~~~~-----------~~~~~~~~~L~~L~l~~n~ 259 (788)
.+.....++.+++++|.+......++ +.+.++|+..++++- ++|.. ...+..++.|+++|||+|-
T Consensus 25 ~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~-ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA 103 (382)
T KOG1909|consen 25 ELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDM-FTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNA 103 (382)
T ss_pred HhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhh-hcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccc
Confidence 34456677888888887755444443 234455666555542 22211 1234456678888888887
Q ss_pred CcccCChhhhh---cCCCCcEEEeeCCcCCCCCC-------------ccccCCCCCCEEEccCCcCCCccc----hHHhh
Q 003893 260 FQGHIPLEIGD---ILSRLTVFNISMNALDGSIP-------------SSFGNMNFLQFLDLSNNQLTGEIP----EHLAM 319 (788)
Q Consensus 260 l~~~~~~~~~~---~~~~L~~L~L~~n~l~~~~~-------------~~~~~l~~L~~L~L~~n~i~~~~~----~~~~~ 319 (788)
+.-..+..+.. .+..|++|.|.+|.+..... .-...-+.|+.+...+|++. ..+ ...++
T Consensus 104 ~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrle-n~ga~~~A~~~~ 182 (382)
T KOG1909|consen 104 FGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLE-NGGATALAEAFQ 182 (382)
T ss_pred cCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccc-cccHHHHHHHHH
Confidence 65444444332 25577888888887652211 12334567888888888776 333 22344
Q ss_pred CCCCCcEEEccccccCccc----cccccCCCccCceeccCccCccc----CCccCCCCCCCcEEEcccCcCCCCCCccc-
Q 003893 320 GCVSLRSLALSNNNLEGHM----FSRNFNLTNLIWLQLEGNHFVGE----IPQSLSKCSSLQGLFLSNNSLSGKIPRWL- 390 (788)
Q Consensus 320 ~l~~L~~L~l~~n~i~~~~----~~~~~~l~~L~~L~l~~n~~~~~----~~~~~~~l~~L~~L~l~~n~l~~~~~~~l- 390 (788)
..+.|+.+.++.|.|.... ...+..++.|+.|||.+|.++.. +...++.+++|+.|++++|.+.......+
T Consensus 183 ~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~ 262 (382)
T KOG1909|consen 183 SHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFV 262 (382)
T ss_pred hccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHH
Confidence 5678888888888765332 23455778888888888877642 23456667778888888877765444333
Q ss_pred ----cCCCCccEEEccCCeeccCch----hhhhcccCCcEEeccCCcC
Q 003893 391 ----GNLTVLRHIIMPKNHIEGPIP----LEFCQLRILQILDISDNNI 430 (788)
Q Consensus 391 ----~~l~~L~~L~l~~n~~~~~~~----~~~~~l~~L~~L~l~~n~~ 430 (788)
...++|+.|.+.+|.++.... ..+...+.|..|++++|.+
T Consensus 263 ~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 263 DALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred HHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 225677777777777764322 2234456777777777766
No 37
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.86 E-value=1e-09 Score=82.04 Aligned_cols=60 Identities=48% Similarity=0.646 Sum_probs=34.6
Q ss_pred CCceEECCCCcccccCcccccccccCCeEeCCCCCCCCCCCcccCCCCCCCeeeCCCccc
Q 003893 592 LLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKL 651 (788)
Q Consensus 592 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l 651 (788)
+|++|++++|+++...+..|.++++|++|++++|+++.+.|..|.++++|++|++++|+|
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 455566666665555555555555666666665555555555555555555555555543
No 38
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.84 E-value=1.5e-09 Score=81.25 Aligned_cols=61 Identities=39% Similarity=0.573 Sum_probs=56.8
Q ss_pred ccCCeEeCCCCCCCCCCCcccCCCCCCCeeeCCCcccCccCchhhhcCCCCcEEecccCcC
Q 003893 615 TKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNL 675 (788)
Q Consensus 615 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l 675 (788)
++|++|++++|+++.+.+..|.++++|++|++++|.++...|..|..+++|+.|++++|+|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 5789999999999988888999999999999999999988888999999999999999975
No 39
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.83 E-value=3.1e-09 Score=121.83 Aligned_cols=132 Identities=24% Similarity=0.290 Sum_probs=86.2
Q ss_pred CCCCccEEEcCCcccccCccchhHhhhcCCCCCEEeCCCCCCCCcccCCCCccCCCCCCCEEEcCCCCCCCCccHhhhcC
Q 003893 17 HFKSLKELYMDDARIALNTSFLQIIGESMPSIQYLSLSNSSVSNNSRTLDQGLCPLVHLQELHMADNDLRGSLPWCLANM 96 (788)
Q Consensus 17 ~l~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~l~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l 96 (788)
.++.|++|-+.+|.- +....+..+...++.||+|||++|.-.+ .+|+.++.+-+||+|+++++.+. .+|..++++
T Consensus 543 ~~~~L~tLll~~n~~-~l~~is~~ff~~m~~LrVLDLs~~~~l~---~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~L 617 (889)
T KOG4658|consen 543 ENPKLRTLLLQRNSD-WLLEISGEFFRSLPLLRVLDLSGNSSLS---KLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNL 617 (889)
T ss_pred CCCccceEEEeecch-hhhhcCHHHHhhCcceEEEECCCCCccC---cCChHHhhhhhhhcccccCCCcc-ccchHHHHH
Confidence 445677777777221 2233344444448888888888865332 45578888888888888888887 778888888
Q ss_pred CCCCEEeCCCCcCcCCCChhhhcCCCCCCEEEcCCCccc-CccCccccCCCCCccEEEc
Q 003893 97 TSLRILDVSSNQLIGSISSSPLIHLTSIEDLILSDNHFQ-IPISLEPLFNHSRLKIFDA 154 (788)
Q Consensus 97 ~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~l~~n~~~-~~~~~~~l~~l~~L~~L~l 154 (788)
+.|.+||+..+.....++. ....+++|++|.+...... +......+.++++|+.+..
T Consensus 618 k~L~~Lnl~~~~~l~~~~~-i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~ 675 (889)
T KOG4658|consen 618 KKLIYLNLEVTGRLESIPG-ILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSI 675 (889)
T ss_pred Hhhheeccccccccccccc-hhhhcccccEEEeeccccccchhhHHhhhcccchhhhee
Confidence 8888888888765544443 5556888888888765421 1222233445555555554
No 40
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.78 E-value=6.9e-10 Score=119.40 Aligned_cols=85 Identities=26% Similarity=0.305 Sum_probs=56.8
Q ss_pred CceEECCCCcccccCcccccccccCCeEeCCCCCCCCCCCcccCCCCCCCeeeCCCcccCcc---Cchh-hhcCCCCcEE
Q 003893 593 LSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWK---IPYQ-LVELNTLAVF 668 (788)
Q Consensus 593 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~---~~~~-l~~l~~L~~L 668 (788)
|+.+++++|++. ..+..+..+..+..|++++|++... ..+...+.+..+..+.|.+... .... ....+.+...
T Consensus 234 L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (414)
T KOG0531|consen 234 LRELYLSGNRIS-RSPEGLENLKNLPVLDLSSNRISNL--EGLERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTL 310 (414)
T ss_pred HHHHhcccCccc-cccccccccccccccchhhcccccc--ccccccchHHHhccCcchhcchhhhhcccccccccccccc
Confidence 677888888877 3335567778888888888888743 3355567777777787776522 1111 3445677788
Q ss_pred ecccCcCcccCC
Q 003893 669 SVAYNNLSGKIP 680 (788)
Q Consensus 669 ~l~~N~l~~~~~ 680 (788)
.+.+|+.....+
T Consensus 311 ~~~~~~~~~~~~ 322 (414)
T KOG0531|consen 311 TLELNPIRKISS 322 (414)
T ss_pred ccccCccccccc
Confidence 888887776554
No 41
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.70 E-value=1.8e-09 Score=116.22 Aligned_cols=263 Identities=26% Similarity=0.222 Sum_probs=149.3
Q ss_pred CccCceeccCccCcccCCccCCCCCCCcEEEcccCcCCCCCCccccCCCCccEEEccCCeeccCchhhhhcccCCcEEec
Q 003893 346 TNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDI 425 (788)
Q Consensus 346 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l 425 (788)
+.++.++...+.+...... ...+..++.+.+..|.+.. ....+..+++|+.+++.+|.+..+.. .+..+++|++|++
T Consensus 49 ~~~~~~~~~~~~~~~~~~~-~~~l~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~i~~-~l~~~~~L~~L~l 125 (414)
T KOG0531|consen 49 SDLEEIDLIFNLDGSDEDL-VESLTSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEKIEN-LLSSLVNLQVLDL 125 (414)
T ss_pred chhhhhcchhccccchhhh-HHHhHhHHhhccchhhhhh-hhcccccccceeeeeccccchhhccc-chhhhhcchheec
Confidence 3445555544433321111 1345556666666666652 23335556666777777776653322 1455666666666
Q ss_pred cCCcCCCCCCCCCCCCcccEEEccCcccccccCcccccccccccEEeCCCCccCCCCCccccCCcCCcEEEccCccCccc
Q 003893 426 SDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGE 505 (788)
Q Consensus 426 ~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~ 505 (788)
++|.|+.. . .+..++.|+.|++++|.|+.. ..+..+++|+.+++++|.+...
T Consensus 126 s~N~I~~i------------------------~--~l~~l~~L~~L~l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~i 177 (414)
T KOG0531|consen 126 SFNKITKL------------------------E--GLSTLTLLKELNLSGNLISDI--SGLESLKSLKLLDLSYNRIVDI 177 (414)
T ss_pred cccccccc------------------------c--chhhccchhhheeccCcchhc--cCCccchhhhcccCCcchhhhh
Confidence 66666421 1 244455577777777777633 3455567777777777777633
Q ss_pred Cc-ccccCCCCCCEEEccCCcCCccCcccccccchhhhccCCCCCCCcccceeecCCcccCcccccccceEeeecCceec
Q 003893 506 VP-IQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYT 584 (788)
Q Consensus 506 ~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~ 584 (788)
-+ . ...+.+++.+++.+|.+.........
T Consensus 178 e~~~-~~~~~~l~~l~l~~n~i~~i~~~~~~------------------------------------------------- 207 (414)
T KOG0531|consen 178 ENDE-LSELISLEELDLGGNSIREIEGLDLL------------------------------------------------- 207 (414)
T ss_pred hhhh-hhhccchHHHhccCCchhcccchHHH-------------------------------------------------
Confidence 33 2 45667777777777776533211110
Q ss_pred ccCCccCCCceEECCCCcccccCccccccccc--CCeEeCCCCCCCCCCCcccCCCCCCCeeeCCCcccCccCchhhhcC
Q 003893 585 YQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTK--IQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVEL 662 (788)
Q Consensus 585 ~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~--L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l 662 (788)
..+..+++..|.++...+ +..+.. |+.+++++|++.. .++.+..+..+..|++++|++...- .+...
T Consensus 208 ------~~l~~~~l~~n~i~~~~~--l~~~~~~~L~~l~l~~n~i~~-~~~~~~~~~~l~~l~~~~n~~~~~~--~~~~~ 276 (414)
T KOG0531|consen 208 ------KKLVLLSLLDNKISKLEG--LNELVMLHLRELYLSGNRISR-SPEGLENLKNLPVLDLSSNRISNLE--GLERL 276 (414)
T ss_pred ------HHHHHhhcccccceeccC--cccchhHHHHHHhcccCcccc-ccccccccccccccchhhccccccc--ccccc
Confidence 023344777777764332 223333 8889999999883 3366777888999999999887432 34445
Q ss_pred CCCcEEecccCcCccc---CCCC-ccccCCCCcCCcCCCCCC
Q 003893 663 NTLAVFSVAYNNLSGK---IPER-AAQFATFNESSYEGNPFL 700 (788)
Q Consensus 663 ~~L~~L~l~~N~l~~~---~~~~-~~~~~~l~~~~~~~Np~~ 700 (788)
..+..+....|.+... .... ......+....+.+||..
T Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (414)
T KOG0531|consen 277 PKLSELWLNDNKLALSEAISQEYITSAAPTLVTLTLELNPIR 318 (414)
T ss_pred chHHHhccCcchhcchhhhhccccccccccccccccccCccc
Confidence 6666677777766522 1110 233445555556666543
No 42
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.68 E-value=8.5e-09 Score=118.36 Aligned_cols=128 Identities=27% Similarity=0.301 Sum_probs=70.5
Q ss_pred CCCCEEEccCCcCCCccchHHhhCCCCCcEEEccccc--cCccccccccCCCccCceeccCccCcccCCccCCCCCCCcE
Q 003893 297 NFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNN--LEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQG 374 (788)
Q Consensus 297 ~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~l~~n~--i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~ 374 (788)
...+...+-+|.+. .++... .++.|++|-+..|. +.......|..++.|+.||+++|.-.+.+|..++.+-+|+.
T Consensus 523 ~~~rr~s~~~~~~~-~~~~~~--~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~Lry 599 (889)
T KOG4658|consen 523 NSVRRMSLMNNKIE-HIAGSS--ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRY 599 (889)
T ss_pred hheeEEEEeccchh-hccCCC--CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhc
Confidence 44555555555554 444433 24456666665554 33333333455666666666665555556666666666666
Q ss_pred EEcccCcCCCCCCccccCCCCccEEEccCCeeccCchhhhhcccCCcEEeccCC
Q 003893 375 LFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDN 428 (788)
Q Consensus 375 L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n 428 (788)
|++++..+. .+|..+.++..|.+|++..+......+.....+.+|++|.+...
T Consensus 600 L~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s 652 (889)
T KOG4658|consen 600 LDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRS 652 (889)
T ss_pred ccccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccEEEeecc
Confidence 666666665 55566666666666666655544344444455666666665543
No 43
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.61 E-value=9.1e-10 Score=116.25 Aligned_cols=129 Identities=24% Similarity=0.315 Sum_probs=94.8
Q ss_pred cccceEeeecCceecc-cCCccCCCceEECCCCcccccCcccccccccCCeEeCCCCCCCCCCCcccCCCCCCCeeeCCC
Q 003893 570 ILESFDFTTKSITYTY-QGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSY 648 (788)
Q Consensus 570 ~l~~l~~~~~~~~~~~-~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 648 (788)
.+...++++|.+..+. .-.+.+.++.|||++|+++.. +.+..++.|++|||++|.++...--...++. |+.|.+++
T Consensus 165 ~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrn 241 (1096)
T KOG1859|consen 165 KLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRN 241 (1096)
T ss_pred hHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhccccccchhhhh-heeeeecc
Confidence 3444455555544332 234556899999999999854 3789999999999999999944332334444 99999999
Q ss_pred cccCccCchhhhcCCCCcEEecccCcCcccCC-CCccccCCCCcCCcCCCCCCCCC
Q 003893 649 NKLSWKIPYQLVELNTLAVFSVAYNNLSGKIP-ERAAQFATFNESSYEGNPFLCGP 703 (788)
Q Consensus 649 N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~-~~~~~~~~l~~~~~~~Np~~C~~ 703 (788)
|.++.. ..+.++.+|+.||+++|-+.+... ..+..+..+..+.+.|||..|.+
T Consensus 242 N~l~tL--~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c~p 295 (1096)
T KOG1859|consen 242 NALTTL--RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCCAP 295 (1096)
T ss_pred cHHHhh--hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccccCH
Confidence 999843 467889999999999998876433 22345666788899999999964
No 44
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.59 E-value=1.1e-09 Score=103.47 Aligned_cols=159 Identities=24% Similarity=0.207 Sum_probs=103.1
Q ss_pred CCCcEEEecCCCCCccCchHHhhcCCCCCEEEccCCcccCcCccCccCCCCcCEEEccCC-cCcccCChhhhhcCCCCcE
Q 003893 199 HDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDSLVGPFRLPIHSHKQLRLLDVSKN-NFQGHIPLEIGDILSRLTV 277 (788)
Q Consensus 199 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~~~~~~~~L~~ 277 (788)
..|+++|++...++..-...++..|.+|+.|.+.++++.+.+...+....+|+.|+++.+ +++......++..++.|.+
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~ 264 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE 264 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence 468999999988877666677889999999999999998888888888899999999987 4543333344556788889
Q ss_pred EEeeCCcCCCCCCcc-cc-CCCCCCEEEccCCcCC--CccchHHhhCCCCCcEEEccccc-cCccccccccCCCccCcee
Q 003893 278 FNISMNALDGSIPSS-FG-NMNFLQFLDLSNNQLT--GEIPEHLAMGCVSLRSLALSNNN-LEGHMFSRNFNLTNLIWLQ 352 (788)
Q Consensus 278 L~L~~n~l~~~~~~~-~~-~l~~L~~L~L~~n~i~--~~~~~~~~~~l~~L~~L~l~~n~-i~~~~~~~~~~l~~L~~L~ 352 (788)
|++++|.+....-.. .. --++|+.|+++++.-. ..--..+...|++|.+||++.|. ++......|..++.|++|.
T Consensus 265 LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lS 344 (419)
T KOG2120|consen 265 LNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLS 344 (419)
T ss_pred cCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeee
Confidence 999988766432211 11 1246777777765311 11112233456677777776553 2222223344555555555
Q ss_pred ccCcc
Q 003893 353 LEGNH 357 (788)
Q Consensus 353 l~~n~ 357 (788)
++.|.
T Consensus 345 lsRCY 349 (419)
T KOG2120|consen 345 LSRCY 349 (419)
T ss_pred hhhhc
Confidence 55553
No 45
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.49 E-value=2.9e-09 Score=100.74 Aligned_cols=180 Identities=18% Similarity=0.162 Sum_probs=93.7
Q ss_pred CCCEEeCCCCcCcCCCChhhhcCCCCCCEEEcCCCcccCccCccccCCCCCccEEEccCCcc-chhhhccccCCCCcccc
Q 003893 98 SLRILDVSSNQLIGSISSSPLIHLTSIEDLILSDNHFQIPISLEPLFNHSRLKIFDAENNEI-NAEIIESHSLTTPNFQL 176 (788)
Q Consensus 98 ~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~~-~~~~~~~~~~~~~~~~L 176 (788)
+|++||||+..|+..---..+.+|.+|+.|.+.++++...+. ..+++-.+|+.|+++++.- +....
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~-~~iAkN~~L~~lnlsm~sG~t~n~~------------ 252 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIV-NTIAKNSNLVRLNLSMCSGFTENAL------------ 252 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHH-HHHhccccceeeccccccccchhHH------------
Confidence 466666666655422222234556666666666666654433 2455566666666666541 11100
Q ss_pred cEEEccCCCcCCccCCccccCCCCCcEEEecCCCCCccCchHHhhc-CCCCCEEEccCCcc---cCcCccCccCCCCcCE
Q 003893 177 QSLLLSSGYRDGITFPKFLYNQHDLEYVRLSHIKMNEEFPNWLLEN-NTKLRQLSLVNDSL---VGPFRLPIHSHKQLRL 252 (788)
Q Consensus 177 ~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~-l~~L~~L~l~~~~~---~~~~~~~~~~~~~L~~ 252 (788)
-..+..|+.|..|+++.|..+.+........ -++|+.|+++++.- ......-...+++|.+
T Consensus 253 ---------------~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~ 317 (419)
T KOG2120|consen 253 ---------------QLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVH 317 (419)
T ss_pred ---------------HHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceee
Confidence 0123445556666666665543332222222 24566666665531 1111112245677777
Q ss_pred EEccCCc-CcccCChhhhhcCCCCcEEEeeCCcCCCCCCcc---ccCCCCCCEEEccCCc
Q 003893 253 LDVSKNN-FQGHIPLEIGDILSRLTVFNISMNALDGSIPSS---FGNMNFLQFLDLSNNQ 308 (788)
Q Consensus 253 L~l~~n~-l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~---~~~l~~L~~L~L~~n~ 308 (788)
||+++|. ++...-..+++ ++.|++|.++.|-. ++|.. +...|.|.+|++.++-
T Consensus 318 LDLSD~v~l~~~~~~~~~k-f~~L~~lSlsRCY~--i~p~~~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 318 LDLSDSVMLKNDCFQEFFK-FNYLQHLSLSRCYD--IIPETLLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred eccccccccCchHHHHHHh-cchheeeehhhhcC--CChHHeeeeccCcceEEEEecccc
Confidence 7777764 33222223333 67788888887753 34443 5667888888887763
No 46
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.29 E-value=1.8e-07 Score=88.90 Aligned_cols=224 Identities=19% Similarity=0.141 Sum_probs=125.2
Q ss_pred CCCEEEccCCcCCCccc-hHHhhCCCCCcEEEccccccCccc--cccccCCCccCceeccCccCcccCCccCCCCCCCcE
Q 003893 298 FLQFLDLSNNQLTGEIP-EHLAMGCVSLRSLALSNNNLEGHM--FSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQG 374 (788)
Q Consensus 298 ~L~~L~L~~n~i~~~~~-~~~~~~l~~L~~L~l~~n~i~~~~--~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~ 374 (788)
.++.|.+.++.|..... ..+...+..++++|+.+|.|+... ...+.++|.|+.|+++.|.+...+...-....+|++
T Consensus 46 a~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~ 125 (418)
T KOG2982|consen 46 ALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRV 125 (418)
T ss_pred chhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEE
Confidence 44455555555542221 222334566777777777766422 223346777788888777776433322135667788
Q ss_pred EEcccCcCCCC-CCccccCCCCccEEEccCCeeccCc--hhhhhc-ccCCcEEeccCCcCCCCC--CC-CCCCCcccEEE
Q 003893 375 LFLSNNSLSGK-IPRWLGNLTVLRHIIMPKNHIEGPI--PLEFCQ-LRILQILDISDNNISGSL--PS-CYDFVCIEQVH 447 (788)
Q Consensus 375 L~l~~n~l~~~-~~~~l~~l~~L~~L~l~~n~~~~~~--~~~~~~-l~~L~~L~l~~n~~~~~~--~~-~~~~~~L~~L~ 447 (788)
|.+.+..+.-. ....+..+|.+++|+++.|...... ...... -+.+++|....|....-. .. ...++++..+.
T Consensus 126 lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~ 205 (418)
T KOG2982|consen 126 LVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVF 205 (418)
T ss_pred EEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchhee
Confidence 87777665422 2234456777777777777433211 111111 123444444444221000 00 01256677777
Q ss_pred ccCcccccccCcccccccccccEEeCCCCccCCC-CCccccCCcCCcEEEccCccCcccCcc------cccCCCCCCEEE
Q 003893 448 LSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGN-IPDRVDGLSQLSYLILAHNNLEGEVPI------QLCRLNQLQLLD 520 (788)
Q Consensus 448 l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~------~~~~l~~L~~L~ 520 (788)
+..|++...-....+..+|.+..|+++.++|..- .-+.+.++++|+.|.++++++...... .++.+++++.|+
T Consensus 206 v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLN 285 (418)
T KOG2982|consen 206 VCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLN 285 (418)
T ss_pred eecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeeccceEEec
Confidence 7777766555555666777777888888887632 224567788888888888887633321 246677777776
Q ss_pred c
Q 003893 521 L 521 (788)
Q Consensus 521 L 521 (788)
=
T Consensus 286 G 286 (418)
T KOG2982|consen 286 G 286 (418)
T ss_pred C
Confidence 3
No 47
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.21 E-value=8.5e-08 Score=95.53 Aligned_cols=303 Identities=18% Similarity=0.100 Sum_probs=169.2
Q ss_pred CCccEEEcCCcccccCc-cchhHhhhcCCCCCEEeCCCCCCCCcccCCCCccCCCCCCCEEEcCCCC-CCCCccH-hhhc
Q 003893 19 KSLKELYMDDARIALNT-SFLQIIGESMPSIQYLSLSNSSVSNNSRTLDQGLCPLVHLQELHMADND-LRGSLPW-CLAN 95 (788)
Q Consensus 19 ~~L~~L~L~~~~~~~~~-~~~~~~~~~l~~L~~L~L~~~~l~~~~~~l~~~l~~l~~L~~L~L~~n~-i~~~~~~-~~~~ 95 (788)
..||.|.+.+ +.-.+ .-...+...+++++.|++.+|....... +...-..+++|++|+|..|. +++..-. ....
T Consensus 138 g~lk~LSlrG--~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s-~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~g 214 (483)
T KOG4341|consen 138 GFLKELSLRG--CRAVGDSSLRTFASNCPNIEHLALYGCKKITDSS-LLSLARYCRKLRHLNLHSCSSITDVSLKYLAEG 214 (483)
T ss_pred cccccccccc--cccCCcchhhHHhhhCCchhhhhhhcceeccHHH-HHHHHHhcchhhhhhhcccchhHHHHHHHHHHh
Confidence 3578888888 54211 1223333348888888888876211110 00112457788888888863 4433323 2347
Q ss_pred CCCCCEEeCCCCc-CcCCCChhhhcCCCCCCEEEcCCCcccCccCccc----cCCCCCccEEEccCCc-cchhhhccccC
Q 003893 96 MTSLRILDVSSNQ-LIGSISSSPLIHLTSIEDLILSDNHFQIPISLEP----LFNHSRLKIFDAENNE-INAEIIESHSL 169 (788)
Q Consensus 96 l~~L~~L~Ls~n~-l~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~----l~~l~~L~~L~l~~n~-~~~~~~~~~~~ 169 (788)
+++|++|+++.+. +++.--..-+..+..++.+.+.+|.= .+... -+.+.-+..+++..+. +++...-. .
T Consensus 215 C~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e---~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~--i 289 (483)
T KOG4341|consen 215 CRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLE---LELEALLKAAAYCLEILKLNLQHCNQLTDEDLWL--I 289 (483)
T ss_pred hhhHHHhhhccCchhhcCcchHHhccchhhhhhhhccccc---ccHHHHHHHhccChHhhccchhhhccccchHHHH--H
Confidence 8888888888774 22211111345566677776665531 11111 1233444455544443 33222110 0
Q ss_pred CCCcccccEEEccCCCcCCccCCccc-cCCCCCcEEEecCCC-CCccCchHHhhcCCCCCEEEccCCcccCc--CccCcc
Q 003893 170 TTPNFQLQSLLLSSGYRDGITFPKFL-YNQHDLEYVRLSHIK-MNEEFPNWLLENNTKLRQLSLVNDSLVGP--FRLPIH 245 (788)
Q Consensus 170 ~~~~~~L~~L~l~~~~~~~~~~~~~l-~~~~~L~~L~l~~~~-~~~~~~~~~~~~l~~L~~L~l~~~~~~~~--~~~~~~ 245 (788)
......++.+..++....+......+ ..+++|+.+.++.|+ +++.....+..+++.|+.+++..+..... ....-.
T Consensus 290 ~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~ 369 (483)
T KOG4341|consen 290 ACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSR 369 (483)
T ss_pred hhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhcc
Confidence 11122566777644444333333334 467899999999987 44444455567889999999998865432 222335
Q ss_pred CCCCcCEEEccCCcC-cccC---ChhhhhcCCCCcEEEeeCCcCCC-CCCccccCCCCCCEEEccCCcCC-CccchHHhh
Q 003893 246 SHKQLRLLDVSKNNF-QGHI---PLEIGDILSRLTVFNISMNALDG-SIPSSFGNMNFLQFLDLSNNQLT-GEIPEHLAM 319 (788)
Q Consensus 246 ~~~~L~~L~l~~n~l-~~~~---~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~i~-~~~~~~~~~ 319 (788)
+++.|+++.++.|.. ++.. -.........++.+.+++++... ..-+.+..+++|+.+++-+++-. .+--..+..
T Consensus 370 ~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~~~~ 449 (483)
T KOG4341|consen 370 NCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAISRFAT 449 (483)
T ss_pred CCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhHHHHh
Confidence 789999999998854 2210 01111235689999999998653 23345678899999999887532 122223334
Q ss_pred CCCCCcEEEc
Q 003893 320 GCVSLRSLAL 329 (788)
Q Consensus 320 ~l~~L~~L~l 329 (788)
++|+++...+
T Consensus 450 ~lp~i~v~a~ 459 (483)
T KOG4341|consen 450 HLPNIKVHAY 459 (483)
T ss_pred hCccceehhh
Confidence 5677665543
No 48
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.20 E-value=8.1e-08 Score=80.37 Aligned_cols=82 Identities=23% Similarity=0.338 Sum_probs=38.9
Q ss_pred CceEECCCCcccccCcccccccccCCeEeCCCCCCCCCCCcccCCCCCCCeeeCCCcccCccCchhhhcCCCCcEEeccc
Q 003893 593 LSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAY 672 (788)
Q Consensus 593 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~ 672 (788)
|+..+|++|.+....++.-...+..+.|+|++|.|+ .+|..+..++.|+.|+++.|++. ..|..+..+.++..|+..+
T Consensus 55 l~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~ 132 (177)
T KOG4579|consen 55 LTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSPE 132 (177)
T ss_pred EEEEecccchhhhCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCCC
Confidence 334444444444222222222334555555555555 23444555555555555555555 3444444455555555555
Q ss_pred CcCc
Q 003893 673 NNLS 676 (788)
Q Consensus 673 N~l~ 676 (788)
|.+.
T Consensus 133 na~~ 136 (177)
T KOG4579|consen 133 NARA 136 (177)
T ss_pred Cccc
Confidence 5443
No 49
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.18 E-value=1e-07 Score=95.02 Aligned_cols=110 Identities=14% Similarity=-0.002 Sum_probs=55.9
Q ss_pred CCCEEeCCCCCCCCcccCCCCccCCCCCCCEEEcCCCC-CCCCccHhh-hcCCCCCEEeCCCCc-CcCCCChhhhcCCCC
Q 003893 47 SIQYLSLSNSSVSNNSRTLDQGLCPLVHLQELHMADND-LRGSLPWCL-ANMTSLRILDVSSNQ-LIGSISSSPLIHLTS 123 (788)
Q Consensus 47 ~L~~L~L~~~~l~~~~~~l~~~l~~l~~L~~L~L~~n~-i~~~~~~~~-~~l~~L~~L~Ls~n~-l~~~~~~~~l~~l~~ 123 (788)
.||.|.++|+.-.+. ..+-....+++++++|++.+|. +++..-..+ ..+++|++|++..|. +++..-..-...+++
T Consensus 139 ~lk~LSlrG~r~v~~-sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~k 217 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGD-SSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRK 217 (483)
T ss_pred ccccccccccccCCc-chhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhh
Confidence 467777777753222 1111223467777777777774 333322233 367777777777753 221111111234777
Q ss_pred CCEEEcCCCcc-cCccCccccCCCCCccEEEccCC
Q 003893 124 IEDLILSDNHF-QIPISLEPLFNHSRLKIFDAENN 157 (788)
Q Consensus 124 L~~L~l~~n~~-~~~~~~~~l~~l~~L~~L~l~~n 157 (788)
|++++++.+.- ++.---....+++.++.+.+++|
T Consensus 218 L~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC 252 (483)
T KOG4341|consen 218 LKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGC 252 (483)
T ss_pred HHHhhhccCchhhcCcchHHhccchhhhhhhhccc
Confidence 77777777652 22111112344555666655544
No 50
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.08 E-value=4.7e-08 Score=103.63 Aligned_cols=178 Identities=24% Similarity=0.198 Sum_probs=117.3
Q ss_pred ChhhhhcCCCCcEEEeeCCcCCCCCCccccCC-CCCCEEEccCCcCC----------CccchHHhhCCCCCcEEEccccc
Q 003893 265 PLEIGDILSRLTVFNISMNALDGSIPSSFGNM-NFLQFLDLSNNQLT----------GEIPEHLAMGCVSLRSLALSNNN 333 (788)
Q Consensus 265 ~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l-~~L~~L~L~~n~i~----------~~~~~~~~~~l~~L~~L~l~~n~ 333 (788)
|..++. +.+|++|.+.+|.+.. ...+..+ ..|++|-..+ .+. +.+..... .-.|...+.++|.
T Consensus 102 pi~ifp-F~sLr~LElrg~~L~~--~~GL~~lr~qLe~LIC~~-Sl~Al~~v~ascggd~~ns~~--Wn~L~~a~fsyN~ 175 (1096)
T KOG1859|consen 102 PISIFP-FRSLRVLELRGCDLST--AKGLQELRHQLEKLICHN-SLDALRHVFASCGGDISNSPV--WNKLATASFSYNR 175 (1096)
T ss_pred Cceecc-ccceeeEEecCcchhh--hhhhHHHHHhhhhhhhhc-cHHHHHHHHHHhccccccchh--hhhHhhhhcchhh
Confidence 445555 6788888888887763 1112111 2344443322 111 11111111 1257788888888
Q ss_pred cCccccccccCCCccCceeccCccCcccCCccCCCCCCCcEEEcccCcCCCCCCccccCCCCccEEEccCCeeccCchhh
Q 003893 334 LEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLE 413 (788)
Q Consensus 334 i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~ 413 (788)
+.. ....+.-++.|+.|+|++|+++... .+..++.|++||+++|.+....--...++. |..|.+++|.++.. ..
T Consensus 176 L~~-mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN~l~tL--~g 249 (1096)
T KOG1859|consen 176 LVL-MDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNNALTTL--RG 249 (1096)
T ss_pred HHh-HHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhccccccchhhhh-heeeeecccHHHhh--hh
Confidence 774 3345566789999999999998543 788899999999999998843323333444 99999999988733 45
Q ss_pred hhcccCCcEEeccCCcCCCC--CCCCCCCCcccEEEccCcccc
Q 003893 414 FCQLRILQILDISDNNISGS--LPSCYDFVCIEQVHLSKNMLH 454 (788)
Q Consensus 414 ~~~l~~L~~L~l~~n~~~~~--~~~~~~~~~L~~L~l~~n~~~ 454 (788)
+.++.+|+.||+++|-+.+. +...+.+..|..|.+.+|.+.
T Consensus 250 ie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 250 IENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred HHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 77899999999999977643 223344677888888888764
No 51
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.06 E-value=1.4e-06 Score=81.85 Aligned_cols=88 Identities=15% Similarity=0.070 Sum_probs=41.7
Q ss_pred CCCcEEEecCCCCCccCchHH----hhcCCCCCEEEccCCcccCcC----ccCccCCCCcCEEEccCCcCcccCChhhhh
Q 003893 199 HDLEYVRLSHIKMNEEFPNWL----LENNTKLRQLSLVNDSLVGPF----RLPIHSHKQLRLLDVSKNNFQGHIPLEIGD 270 (788)
Q Consensus 199 ~~L~~L~l~~~~~~~~~~~~~----~~~l~~L~~L~l~~~~~~~~~----~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~ 270 (788)
..|+.+.+..|.+.......+ +..+.+|+.|++..|.++... ...+...+.|++|.+.+|-++......+++
T Consensus 185 ~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~ 264 (388)
T COG5238 185 ENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLR 264 (388)
T ss_pred cCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHHHH
Confidence 356666666665543221111 123456666666666554321 122333445666666666555433333332
Q ss_pred c-----CCCCcEEEeeCCcCC
Q 003893 271 I-----LSRLTVFNISMNALD 286 (788)
Q Consensus 271 ~-----~~~L~~L~L~~n~l~ 286 (788)
. .|+|..|-..+|.+.
T Consensus 265 ~f~e~~~p~l~~L~~~Yne~~ 285 (388)
T COG5238 265 RFNEKFVPNLMPLPGDYNERR 285 (388)
T ss_pred HhhhhcCCCccccccchhhhc
Confidence 1 345555555555443
No 52
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.06 E-value=9.8e-07 Score=84.00 Aligned_cols=86 Identities=21% Similarity=0.316 Sum_probs=51.1
Q ss_pred CCCCCCEEEcCCCCCCCC--ccHhhhcCCCCCEEeCCCCcCcCCCChhhh-cCCCCCCEEEcCCCcccCccCccccCCCC
Q 003893 71 PLVHLQELHMADNDLRGS--LPWCLANMTSLRILDVSSNQLIGSISSSPL-IHLTSIEDLILSDNHFQIPISLEPLFNHS 147 (788)
Q Consensus 71 ~l~~L~~L~L~~n~i~~~--~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l-~~l~~L~~L~l~~n~~~~~~~~~~l~~l~ 147 (788)
.+++++++||.+|.|++- +...+.++|.|++|+++.|.+...|.. + ....+|++|-|.+..+.-......+..++
T Consensus 69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~--lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP 146 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKS--LPLPLKNLRVLVLNGTGLSWTQSTSSLDDLP 146 (418)
T ss_pred HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCcccc--CcccccceEEEEEcCCCCChhhhhhhhhcch
Confidence 456677777777777642 333446777777777777776644332 2 34556777777666553211223455666
Q ss_pred CccEEEccCCc
Q 003893 148 RLKIFDAENNE 158 (788)
Q Consensus 148 ~L~~L~l~~n~ 158 (788)
.++.|.++.|.
T Consensus 147 ~vtelHmS~N~ 157 (418)
T KOG2982|consen 147 KVTELHMSDNS 157 (418)
T ss_pred hhhhhhhccch
Confidence 77777777664
No 53
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.99 E-value=1.7e-06 Score=81.35 Aligned_cols=189 Identities=22% Similarity=0.244 Sum_probs=117.8
Q ss_pred ccCCCCCcEEEecCCCCCccCchHHhhcC---CCCCEEEccCCcccCc-----------CccCccCCCCcCEEEccCCcC
Q 003893 195 LYNQHDLEYVRLSHIKMNEEFPNWLLENN---TKLRQLSLVNDSLVGP-----------FRLPIHSHKQLRLLDVSKNNF 260 (788)
Q Consensus 195 l~~~~~L~~L~l~~~~~~~~~~~~~~~~l---~~L~~L~l~~~~~~~~-----------~~~~~~~~~~L~~L~l~~n~l 260 (788)
+..+..+..+++++|.+......++.... .+|+..+++.- +++. ....+-.||.|+..++|+|.+
T Consensus 26 l~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~-ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAf 104 (388)
T COG5238 26 LEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDA-FTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAF 104 (388)
T ss_pred HHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhh-hhcccHHHHHHHHHHHHHHHhcCCcceeeecccccc
Confidence 34467788889999888766666653333 45555555432 2221 123456789999999999988
Q ss_pred cccCChhhhhc---CCCCcEEEeeCCcCCCCCCcc-------------ccCCCCCCEEEccCCcCCCccchHHh----hC
Q 003893 261 QGHIPLEIGDI---LSRLTVFNISMNALDGSIPSS-------------FGNMNFLQFLDLSNNQLTGEIPEHLA----MG 320 (788)
Q Consensus 261 ~~~~~~~~~~~---~~~L~~L~L~~n~l~~~~~~~-------------~~~l~~L~~L~L~~n~i~~~~~~~~~----~~ 320 (788)
....|+.+... -..|++|.+++|.+....... ..+-|.|+.....+|++. ..+.... ..
T Consensus 105 g~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRle-ngs~~~~a~~l~s 183 (388)
T COG5238 105 GSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLE-NGSKELSAALLES 183 (388)
T ss_pred CcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhc-cCcHHHHHHHHHh
Confidence 76777665543 347889999998876322211 234478888888888887 5543322 22
Q ss_pred CCCCcEEEccccccCcccc-----ccccCCCccCceeccCccCcccC----CccCCCCCCCcEEEcccCcCCCC
Q 003893 321 CVSLRSLALSNNNLEGHMF-----SRNFNLTNLIWLQLEGNHFVGEI----PQSLSKCSSLQGLFLSNNSLSGK 385 (788)
Q Consensus 321 l~~L~~L~l~~n~i~~~~~-----~~~~~l~~L~~L~l~~n~~~~~~----~~~~~~l~~L~~L~l~~n~l~~~ 385 (788)
-.+|+++.+..|.|.-... ..++.+.+|+.||+.+|.++... ..++...+.|+.|.+..|-++..
T Consensus 184 h~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~ 257 (388)
T COG5238 184 HENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNE 257 (388)
T ss_pred hcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccc
Confidence 2578888888887763321 12335677777888777766322 23344555667777766655543
No 54
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.96 E-value=3e-06 Score=95.18 Aligned_cols=160 Identities=21% Similarity=0.316 Sum_probs=106.7
Q ss_pred CCCCEEeCCCCCCCCcccCCCCcc-CCCCCCCEEEcCCCCCCCC-ccHhhhcCCCCCEEeCCCCcCcCCCChhhhcCCCC
Q 003893 46 PSIQYLSLSNSSVSNNSRTLDQGL-CPLVHLQELHMADNDLRGS-LPWCLANMTSLRILDVSSNQLIGSISSSPLIHLTS 123 (788)
Q Consensus 46 ~~L~~L~L~~~~l~~~~~~l~~~l-~~l~~L~~L~L~~n~i~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~ 123 (788)
.+|++||++|...... ..+..+ ..||.|+.|.+++-.+... ......++++|+.||+|+++++ .+. .++++++
T Consensus 122 ~nL~~LdI~G~~~~s~--~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~-nl~--GIS~Lkn 196 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSN--GWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNIS-NLS--GISRLKN 196 (699)
T ss_pred HhhhhcCccccchhhc--cHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCcc-CcH--HHhcccc
Confidence 5799999998653221 111233 3589999999998776533 3444578999999999999987 342 7899999
Q ss_pred CCEEEcCCCcccCccCccccCCCCCccEEEccCCccchhhhccccCCCCcccccEEEccCCCcCCccCCccccCCCCCcE
Q 003893 124 IEDLILSDNHFQIPISLEPLFNHSRLKIFDAENNEINAEIIESHSLTTPNFQLQSLLLSSGYRDGITFPKFLYNQHDLEY 203 (788)
Q Consensus 124 L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~ 203 (788)
|+.|.+.+-.+........+.++++|+.||+|........ .......+.-..+++|+.
T Consensus 197 Lq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~----------------------~ii~qYlec~~~LpeLrf 254 (699)
T KOG3665|consen 197 LQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDT----------------------KIIEQYLECGMVLPELRF 254 (699)
T ss_pred HHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccch----------------------HHHHHHHHhcccCccccE
Confidence 9999998877664444457788999999999876532211 000001111224667888
Q ss_pred EEecCCCCCccCchHHhhcCCCCCEEEcc
Q 003893 204 VRLSHIKMNEEFPNWLLENNTKLRQLSLV 232 (788)
Q Consensus 204 L~l~~~~~~~~~~~~~~~~l~~L~~L~l~ 232 (788)
||.++..+.+.+...+...-|+|+.+..-
T Consensus 255 LDcSgTdi~~~~le~ll~sH~~L~~i~~~ 283 (699)
T KOG3665|consen 255 LDCSGTDINEEILEELLNSHPNLQQIAAL 283 (699)
T ss_pred EecCCcchhHHHHHHHHHhCccHhhhhhh
Confidence 88888777766666665555666655443
No 55
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.96 E-value=1.5e-05 Score=72.05 Aligned_cols=109 Identities=17% Similarity=0.207 Sum_probs=82.7
Q ss_pred CCCCCEEeCCCCCCCCcccCCCCccCCCCCCCEEEcCCCCCCCCccHhhhcCCCCCEEeCCCCcCcCCCChhhhcCCCCC
Q 003893 45 MPSIQYLSLSNSSVSNNSRTLDQGLCPLVHLQELHMADNDLRGSLPWCLANMTSLRILDVSSNQLIGSISSSPLIHLTSI 124 (788)
Q Consensus 45 l~~L~~L~L~~~~l~~~~~~l~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L 124 (788)
......+||++|.+... ..|..++.|.+|.|++|+|+.+.|..-..+++|..|.|.+|.|..-.....+..|++|
T Consensus 41 ~d~~d~iDLtdNdl~~l-----~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L 115 (233)
T KOG1644|consen 41 LDQFDAIDLTDNDLRKL-----DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKL 115 (233)
T ss_pred ccccceecccccchhhc-----ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCcc
Confidence 45677899999987533 3577788899999999999987777666788899999999987633333357789999
Q ss_pred CEEEcCCCcccCccCc--cccCCCCCccEEEccCCc
Q 003893 125 EDLILSDNHFQIPISL--EPLFNHSRLKIFDAENNE 158 (788)
Q Consensus 125 ~~L~l~~n~~~~~~~~--~~l~~l~~L~~L~l~~n~ 158 (788)
++|.+-+|+++..... ..+..+++|+.||+..-.
T Consensus 116 ~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt 151 (233)
T KOG1644|consen 116 EYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVT 151 (233)
T ss_pred ceeeecCCchhcccCceeEEEEecCcceEeehhhhh
Confidence 9999999987633222 245678999999987654
No 56
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.88 E-value=1.2e-06 Score=73.55 Aligned_cols=103 Identities=21% Similarity=0.290 Sum_probs=68.7
Q ss_pred CCceEECCCCcccccCcccc---cccccCCeEeCCCCCCCCCCCcccCCCCCCCeeeCCCcccCccCchhhhcCCCCcEE
Q 003893 592 LLSGLDLSCNRLIGHIPPQI---GNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVF 668 (788)
Q Consensus 592 ~L~~L~Ls~n~l~~~~~~~~---~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L 668 (788)
.+..++|+.|++. .+++.. .....|+..+|++|.+....+..-...+.++.|++++|.|+ .+|..+..++.|+.+
T Consensus 28 E~h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~l 105 (177)
T KOG4579|consen 28 ELHFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSL 105 (177)
T ss_pred Hhhhcccccchhh-HHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhc
Confidence 3556777777765 333333 33445666688888888544333334457888888888888 577778888888888
Q ss_pred ecccCcCcccCCCCccccCCCCcCCcCCC
Q 003893 669 SVAYNNLSGKIPERAAQFATFNESSYEGN 697 (788)
Q Consensus 669 ~l~~N~l~~~~~~~~~~~~~l~~~~~~~N 697 (788)
+++.|++.. .|+.+.++.+|..++..+|
T Consensus 106 Nl~~N~l~~-~p~vi~~L~~l~~Lds~~n 133 (177)
T KOG4579|consen 106 NLRFNPLNA-EPRVIAPLIKLDMLDSPEN 133 (177)
T ss_pred ccccCcccc-chHHHHHHHhHHHhcCCCC
Confidence 888888874 4444555666666655544
No 57
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.85 E-value=4e-05 Score=79.06 Aligned_cols=54 Identities=13% Similarity=0.108 Sum_probs=25.9
Q ss_pred cccccEEeCCCCccCCCCCccccCCcCCcEEEccCccCcccCcccccCCCCCCEEEccCC
Q 003893 465 CLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNN 524 (788)
Q Consensus 465 ~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 524 (788)
+..++.|++++|.++ .+|. -.++|+.|.+++|.-....|..+ .++|++|++++|
T Consensus 51 ~~~l~~L~Is~c~L~-sLP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~C 104 (426)
T PRK15386 51 ARASGRLYIKDCDIE-SLPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHC 104 (426)
T ss_pred hcCCCEEEeCCCCCc-ccCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCc
Confidence 455556666665554 2331 12346666665543222344333 135566666655
No 58
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.83 E-value=1.2e-05 Score=54.69 Aligned_cols=36 Identities=42% Similarity=0.736 Sum_probs=15.8
Q ss_pred cCCeEeCCCCCCCCCCCcccCCCCCCCeeeCCCcccC
Q 003893 616 KIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLS 652 (788)
Q Consensus 616 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 652 (788)
+|++|++++|+|+. +|..++++++|+.|++++|+|+
T Consensus 2 ~L~~L~l~~N~i~~-l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQITD-LPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-SS-HGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCcc-cCchHhCCCCCCEEEecCCCCC
Confidence 34444555554442 2333444555555555555444
No 59
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.81 E-value=3e-05 Score=70.12 Aligned_cols=103 Identities=24% Similarity=0.298 Sum_probs=64.6
Q ss_pred EEEccCCcCcccCChhhhhcCCCCcEEEeeCCcCCCCCCccccCCCCCCEEEccCCcCCCccchHHhhCCCCCcEEEccc
Q 003893 252 LLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSN 331 (788)
Q Consensus 252 ~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~l~~ 331 (788)
++++.+.++. .+ ...+....+...+||++|.+.. .+.|..++.|.+|.+.+|.|+ .+...+...+++|+.|.+.+
T Consensus 23 e~~LR~lkip-~i-enlg~~~d~~d~iDLtdNdl~~--l~~lp~l~rL~tLll~nNrIt-~I~p~L~~~~p~l~~L~Ltn 97 (233)
T KOG1644|consen 23 ELDLRGLKIP-VI-ENLGATLDQFDAIDLTDNDLRK--LDNLPHLPRLHTLLLNNNRIT-RIDPDLDTFLPNLKTLILTN 97 (233)
T ss_pred cccccccccc-ch-hhccccccccceecccccchhh--cccCCCccccceEEecCCcce-eeccchhhhccccceEEecC
Confidence 4555555443 11 1233335567778888887762 234677788888888888888 67666666677888888888
Q ss_pred cccCccc-cccccCCCccCceeccCccCc
Q 003893 332 NNLEGHM-FSRNFNLTNLIWLQLEGNHFV 359 (788)
Q Consensus 332 n~i~~~~-~~~~~~l~~L~~L~l~~n~~~ 359 (788)
|.+.... ...+..+|.|++|.+-+|.+.
T Consensus 98 Nsi~~l~dl~pLa~~p~L~~Ltll~Npv~ 126 (233)
T KOG1644|consen 98 NSIQELGDLDPLASCPKLEYLTLLGNPVE 126 (233)
T ss_pred cchhhhhhcchhccCCccceeeecCCchh
Confidence 8765432 123445566666666666554
No 60
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.76 E-value=1.4e-05 Score=89.74 Aligned_cols=143 Identities=19% Similarity=0.304 Sum_probs=101.8
Q ss_pred CCccEEEcCCcccccCccchhHhhhcCCCCCEEeCCCCCCCCcccCCCCccCCCCCCCEEEcCCCCCCCCccHhhhcCCC
Q 003893 19 KSLKELYMDDARIALNTSFLQIIGESMPSIQYLSLSNSSVSNNSRTLDQGLCPLVHLQELHMADNDLRGSLPWCLANMTS 98 (788)
Q Consensus 19 ~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~l~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~ 98 (788)
.+|++|+++|. -.+....+..++.-+|+|+.|.+++-.+...- ......++++|+.||+|+++++.. ..++++++
T Consensus 122 ~nL~~LdI~G~-~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~d--F~~lc~sFpNL~sLDIS~TnI~nl--~GIS~Lkn 196 (699)
T KOG3665|consen 122 QNLQHLDISGS-ELFSNGWPKKIGTMLPSLRSLVISGRQFDNDD--FSQLCASFPNLRSLDISGTNISNL--SGISRLKN 196 (699)
T ss_pred HhhhhcCcccc-chhhccHHHHHhhhCcccceEEecCceecchh--HHHHhhccCccceeecCCCCccCc--HHHhcccc
Confidence 57899999982 22556667778777999999999987654321 113456799999999999998865 67889999
Q ss_pred CCEEeCCCCcCcCCCChhhhcCCCCCCEEEcCCCcccCcc-----CccccCCCCCccEEEccCCccchhhhcc
Q 003893 99 LRILDVSSNQLIGSISSSPLIHLTSIEDLILSDNHFQIPI-----SLEPLFNHSRLKIFDAENNEINAEIIES 166 (788)
Q Consensus 99 L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~l~~n~~~~~~-----~~~~l~~l~~L~~L~l~~n~~~~~~~~~ 166 (788)
|+.|.+.+=.+...-....+.++++|+.||+|........ ....-..+++|+.||.++..+.....+.
T Consensus 197 Lq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ 269 (699)
T KOG3665|consen 197 LQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEE 269 (699)
T ss_pred HHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHH
Confidence 9999888766653222235778999999999976533111 1122334889999999998887665554
No 61
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.74 E-value=2.2e-05 Score=53.32 Aligned_cols=38 Identities=34% Similarity=0.611 Sum_probs=32.4
Q ss_pred CCCCeeeCCCcccCccCchhhhcCCCCcEEecccCcCcc
Q 003893 639 RNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSG 677 (788)
Q Consensus 639 ~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~ 677 (788)
++|++|++++|+|+ .+|..+.++++|+.|++++|+++.
T Consensus 1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~~ 38 (44)
T PF12799_consen 1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPISD 38 (44)
T ss_dssp TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCSB
T ss_pred CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCCC
Confidence 57999999999999 466679999999999999999984
No 62
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.62 E-value=9.7e-05 Score=65.26 Aligned_cols=104 Identities=21% Similarity=0.243 Sum_probs=29.8
Q ss_pred ccchHHhhCCCCCcEEEccccccCccccccccCCCccCceeccCccCcccCCccCCCCCCCcEEEcccCcCCCCCCcccc
Q 003893 312 EIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLG 391 (788)
Q Consensus 312 ~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~ 391 (788)
.++...|.++++|+.+.+..+ +..+....|.++++++.+.+.+ .+.......|..+++|+.+++..+ +.......|.
T Consensus 25 ~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~~~-~~~i~~~~f~ 101 (129)
T PF13306_consen 25 KIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDIPSN-ITEIGSSSFS 101 (129)
T ss_dssp EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEETTT--BEEHTTTTT
T ss_pred EeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccccccccCcc-ccEEchhhhc
Confidence 333333333334444444332 3333333333333444444432 222222333444444444444332 2222223333
Q ss_pred CCCCccEEEccCCeeccCchhhhhcccCC
Q 003893 392 NLTVLRHIIMPKNHIEGPIPLEFCQLRIL 420 (788)
Q Consensus 392 ~l~~L~~L~l~~n~~~~~~~~~~~~l~~L 420 (788)
++ .++.+.+.. .+..+....|.++++|
T Consensus 102 ~~-~l~~i~~~~-~~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 102 NC-NLKEINIPS-NITKIEENAFKNCTKL 128 (129)
T ss_dssp T--T--EEE-TT-B-SS----GGG-----
T ss_pred CC-CceEEEECC-CccEECCccccccccC
Confidence 43 444444443 2222333344444443
No 63
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.60 E-value=0.00011 Score=64.99 Aligned_cols=123 Identities=24% Similarity=0.246 Sum_probs=50.1
Q ss_pred hhhhcCCCCcEEEeeCCcCCCCCCccccCCCCCCEEEccCCcCCCccchHHhhCCCCCcEEEccccccCccccccccCCC
Q 003893 267 EIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLT 346 (788)
Q Consensus 267 ~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~ 346 (788)
..+..+++|+.+.+.. .+.......|..+++|+.+.+..+ +. .++...+.++++++.+.+.+ .+.......|..++
T Consensus 6 ~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~-~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~ 81 (129)
T PF13306_consen 6 NAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LT-SIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCT 81 (129)
T ss_dssp TTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TS-CE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-T
T ss_pred HHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-cc-ccceeeeecccccccccccc-cccccccccccccc
Confidence 3333344555555543 334344445566656666666553 44 55555555555666666644 33334444555566
Q ss_pred ccCceeccCccCcccCCccCCCCCCCcEEEcccCcCCCCCCccccCCCCc
Q 003893 347 NLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVL 396 (788)
Q Consensus 347 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L 396 (788)
+|+.+.+..+ +.......|.++ .|+.+.+.. .+.......|.++++|
T Consensus 82 ~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 82 NLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKL 128 (129)
T ss_dssp TECEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG-----
T ss_pred cccccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccC
Confidence 6666666544 333444556665 666666654 3333444555555554
No 64
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.35 E-value=0.0011 Score=68.78 Aligned_cols=135 Identities=17% Similarity=0.192 Sum_probs=63.8
Q ss_pred cCCCCCEEEccCCcccCcCccCccCCCCcCEEEccCCcCcccCChhhhhcCCCCcEEEeeCC-cCCCCCCccccCCCCCC
Q 003893 222 NNTKLRQLSLVNDSLVGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMN-ALDGSIPSSFGNMNFLQ 300 (788)
Q Consensus 222 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n-~l~~~~~~~~~~l~~L~ 300 (788)
.+.++++|++++|.++... .-.++|++|.+++|.--..+|..+ .++|++|++++| .+. .+| ++|+
T Consensus 50 ~~~~l~~L~Is~c~L~sLP----~LP~sLtsL~Lsnc~nLtsLP~~L---P~nLe~L~Ls~Cs~L~-sLP------~sLe 115 (426)
T PRK15386 50 EARASGRLYIKDCDIESLP----VLPNELTEITIENCNNLTTLPGSI---PEGLEKLTVCHCPEIS-GLP------ESVR 115 (426)
T ss_pred HhcCCCEEEeCCCCCcccC----CCCCCCcEEEccCCCCcccCCchh---hhhhhheEccCccccc-ccc------cccc
Confidence 4566666666666555432 122357777776643222455433 246777777776 333 333 2456
Q ss_pred EEEccCCcCCCccchHHhhCCCCCcEEEccccc-cCcc-ccccccCCCccCceeccCccCcccCCccCCCCCCCcEEEcc
Q 003893 301 FLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNN-LEGH-MFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLS 378 (788)
Q Consensus 301 ~L~L~~n~i~~~~~~~~~~~l~~L~~L~l~~n~-i~~~-~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~ 378 (788)
.|+++.+... .++. + .++|+.|.+.+++ .... .+.. -.++|++|++++|... ..|..+. .+|+.|+++
T Consensus 116 ~L~L~~n~~~-~L~~-L---PssLk~L~I~~~n~~~~~~lp~~--LPsSLk~L~Is~c~~i-~LP~~LP--~SLk~L~ls 185 (426)
T PRK15386 116 SLEIKGSATD-SIKN-V---PNGLTSLSINSYNPENQARIDNL--ISPSLKTLSLTGCSNI-ILPEKLP--ESLQSITLH 185 (426)
T ss_pred eEEeCCCCCc-cccc-C---cchHhheeccccccccccccccc--cCCcccEEEecCCCcc-cCccccc--ccCcEEEec
Confidence 6666555432 2211 0 1245556654322 1000 0000 1245666666666544 2333333 356666665
Q ss_pred cC
Q 003893 379 NN 380 (788)
Q Consensus 379 ~n 380 (788)
.+
T Consensus 186 ~n 187 (426)
T PRK15386 186 IE 187 (426)
T ss_pred cc
Confidence 44
No 65
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.22 E-value=8.6e-05 Score=70.39 Aligned_cols=104 Identities=21% Similarity=0.301 Sum_probs=60.0
Q ss_pred CCCCCEEeCCCCCCCCcccCCCCccCCCCCCCEEEcCCC--CCCCCccHhhhcCCCCCEEeCCCCcCcCCCChhhhcCCC
Q 003893 45 MPSIQYLSLSNSSVSNNSRTLDQGLCPLVHLQELHMADN--DLRGSLPWCLANMTSLRILDVSSNQLIGSISSSPLIHLT 122 (788)
Q Consensus 45 l~~L~~L~L~~~~l~~~~~~l~~~l~~l~~L~~L~L~~n--~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~ 122 (788)
+..|+.|++.++.++.. ..+-.+++|++|.++.| ++.+.++-...++++|++|++++|++...-....+..+.
T Consensus 42 ~~~le~ls~~n~gltt~-----~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~ 116 (260)
T KOG2739|consen 42 FVELELLSVINVGLTTL-----TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELE 116 (260)
T ss_pred ccchhhhhhhccceeec-----ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhc
Confidence 56677777777665433 23555677777777777 555555444556677777777777765211111355666
Q ss_pred CCCEEEcCCCcccCccCc--cccCCCCCccEEE
Q 003893 123 SIEDLILSDNHFQIPISL--EPLFNHSRLKIFD 153 (788)
Q Consensus 123 ~L~~L~l~~n~~~~~~~~--~~l~~l~~L~~L~ 153 (788)
+|..|++.+|..+..... ..+.-+++|++|+
T Consensus 117 nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD 149 (260)
T KOG2739|consen 117 NLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLD 149 (260)
T ss_pred chhhhhcccCCccccccHHHHHHHHhhhhcccc
Confidence 777777777765421111 1233455666555
No 66
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.05 E-value=8.3e-05 Score=82.81 Aligned_cols=112 Identities=28% Similarity=0.229 Sum_probs=51.8
Q ss_pred cCCCCCEEEccCCcccCc--CccCccCCCCcCEEEccCC-cCcccCC---hhhhhcCCCCcEEEeeCCc-CCCCCCcccc
Q 003893 222 NNTKLRQLSLVNDSLVGP--FRLPIHSHKQLRLLDVSKN-NFQGHIP---LEIGDILSRLTVFNISMNA-LDGSIPSSFG 294 (788)
Q Consensus 222 ~l~~L~~L~l~~~~~~~~--~~~~~~~~~~L~~L~l~~n-~l~~~~~---~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~ 294 (788)
.++.|+.+.+.++.-... .......++.|+.|+++++ ......+ ......+++|+.|+++++. ++...-..+.
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~ 265 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA 265 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence 345555555554432221 1222334555555555542 1110111 1223334566666666665 3333222222
Q ss_pred -CCCCCCEEEccCCc-CCCccchHHhhCCCCCcEEEccccc
Q 003893 295 -NMNFLQFLDLSNNQ-LTGEIPEHLAMGCVSLRSLALSNNN 333 (788)
Q Consensus 295 -~l~~L~~L~L~~n~-i~~~~~~~~~~~l~~L~~L~l~~n~ 333 (788)
.+++|+.|.+.++. +++..-..+...++.|++|+++.+.
T Consensus 266 ~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~ 306 (482)
T KOG1947|consen 266 SRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCH 306 (482)
T ss_pred hhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCc
Confidence 25666666655555 4444444444556666666666554
No 67
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.89 E-value=0.00054 Score=65.11 Aligned_cols=90 Identities=22% Similarity=0.238 Sum_probs=70.2
Q ss_pred ccCCCCCCCEEEcCCCCCCCCccHhhhcCCCCCEEeCCCC--cCcCCCChhhhcCCCCCCEEEcCCCcccCccCccccCC
Q 003893 68 GLCPLVHLQELHMADNDLRGSLPWCLANMTSLRILDVSSN--QLIGSISSSPLIHLTSIEDLILSDNHFQIPISLEPLFN 145 (788)
Q Consensus 68 ~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n--~l~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~ 145 (788)
....+..|+.|.+.++.++.. ..|..+++|++|++|.| .+.+.++. -...+++|+++++++|++...-.+..+..
T Consensus 38 l~d~~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~v-l~e~~P~l~~l~ls~Nki~~lstl~pl~~ 114 (260)
T KOG2739|consen 38 LTDEFVELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEV-LAEKAPNLKVLNLSGNKIKDLSTLRPLKE 114 (260)
T ss_pred ccccccchhhhhhhccceeec--ccCCCcchhhhhcccCCccccccccee-hhhhCCceeEEeecCCccccccccchhhh
Confidence 345577788888888887754 34678999999999999 66655555 45667999999999999875555567788
Q ss_pred CCCccEEEccCCccc
Q 003893 146 HSRLKIFDAENNEIN 160 (788)
Q Consensus 146 l~~L~~L~l~~n~~~ 160 (788)
+++|..|++..|..+
T Consensus 115 l~nL~~Ldl~n~~~~ 129 (260)
T KOG2739|consen 115 LENLKSLDLFNCSVT 129 (260)
T ss_pred hcchhhhhcccCCcc
Confidence 889999999888754
No 68
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.84 E-value=0.00024 Score=79.05 Aligned_cols=38 Identities=24% Similarity=0.230 Sum_probs=18.9
Q ss_pred CCCCcEEEecCCCCCc--cCchHHhhcCCCCCEEEccCCc
Q 003893 198 QHDLEYVRLSHIKMNE--EFPNWLLENNTKLRQLSLVNDS 235 (788)
Q Consensus 198 ~~~L~~L~l~~~~~~~--~~~~~~~~~l~~L~~L~l~~~~ 235 (788)
+..++.+.+..+.... .........+++++.+.+..+.
T Consensus 334 c~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~ 373 (482)
T KOG1947|consen 334 CPSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCG 373 (482)
T ss_pred CccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhh
Confidence 3344444444433221 2333334566777777666665
No 69
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.42 E-value=0.00011 Score=69.67 Aligned_cols=102 Identities=20% Similarity=0.149 Sum_probs=64.6
Q ss_pred CCCCCEEeCCCCCCCCcccCCCCccCCCCCCCEEEcCCCCCCCCccHhhhcCCCCCEEeCCCCcCcCCCChhhhcCCCCC
Q 003893 45 MPSIQYLSLSNSSVSNNSRTLDQGLCPLVHLQELHMADNDLRGSLPWCLANMTSLRILDVSSNQLIGSISSSPLIHLTSI 124 (788)
Q Consensus 45 l~~L~~L~L~~~~l~~~~~~l~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L 124 (788)
+.+.+.|+.-||.+.++ .-..+++.|++|.|+-|+|+...| +..|++|+.|.|..|.|.+.-...-+.++++|
T Consensus 18 l~~vkKLNcwg~~L~DI-----sic~kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~sldEL~YLknlpsL 90 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDI-----SICEKMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIESLDELEYLKNLPSL 90 (388)
T ss_pred HHHhhhhcccCCCccHH-----HHHHhcccceeEEeeccccccchh--HHHHHHHHHHHHHhcccccHHHHHHHhcCchh
Confidence 44567777777777554 235567777888888887775533 67778888888887776632222235667777
Q ss_pred CEEEcCCCcccCccCc----cccCCCCCccEEE
Q 003893 125 EDLILSDNHFQIPISL----EPLFNHSRLKIFD 153 (788)
Q Consensus 125 ~~L~l~~n~~~~~~~~----~~l~~l~~L~~L~ 153 (788)
+.|-|..|.-.+..+. ..+.-+++|++||
T Consensus 91 r~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 91 RTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 7777777765433221 1344567777765
No 70
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.05 E-value=0.00057 Score=65.05 Aligned_cols=61 Identities=25% Similarity=0.269 Sum_probs=27.8
Q ss_pred hcCCCCcEEEeeCCcCCCCCCccccCCCCCCEEEccCCcCCCccchHH-hhCCCCCcEEEccccc
Q 003893 270 DILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHL-AMGCVSLRSLALSNNN 333 (788)
Q Consensus 270 ~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~-~~~l~~L~~L~l~~n~ 333 (788)
..++.|++|.|+-|+|+..- .+..|++|++|.|..|.|. .+.+.. ..++|+|+.|.|..|.
T Consensus 38 ~kMp~lEVLsLSvNkIssL~--pl~rCtrLkElYLRkN~I~-sldEL~YLknlpsLr~LWL~ENP 99 (388)
T KOG2123|consen 38 EKMPLLEVLSLSVNKISSLA--PLQRCTRLKELYLRKNCIE-SLDELEYLKNLPSLRTLWLDENP 99 (388)
T ss_pred HhcccceeEEeeccccccch--hHHHHHHHHHHHHHhcccc-cHHHHHHHhcCchhhhHhhccCC
Confidence 33455555555555554322 2445555555555555554 332221 2234444444444443
No 71
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.70 E-value=0.013 Score=32.94 Aligned_cols=12 Identities=58% Similarity=0.708 Sum_probs=5.8
Q ss_pred CCeeeCCCcccC
Q 003893 641 IESLDLSYNKLS 652 (788)
Q Consensus 641 L~~L~Ls~N~l~ 652 (788)
|++||+++|+++
T Consensus 2 L~~Ldls~n~l~ 13 (22)
T PF00560_consen 2 LEYLDLSGNNLT 13 (22)
T ss_dssp ESEEEETSSEES
T ss_pred ccEEECCCCcCE
Confidence 444445555444
No 72
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.09 E-value=0.013 Score=32.84 Aligned_cols=19 Identities=58% Similarity=0.889 Sum_probs=9.0
Q ss_pred CCeEeCCCCCCCCCCCcccC
Q 003893 617 IQTLNLSHNNLAGPIPSTFS 636 (788)
Q Consensus 617 L~~L~Ls~N~l~~~~~~~~~ 636 (788)
|++|||++|+++ .+|..|+
T Consensus 2 L~~Ldls~n~l~-~ip~~~~ 20 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSFS 20 (22)
T ss_dssp ESEEEETSSEES-EEGTTTT
T ss_pred ccEEECCCCcCE-eCChhhc
Confidence 455555555555 3333343
No 73
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=92.19 E-value=0.0011 Score=71.56 Aligned_cols=67 Identities=31% Similarity=0.207 Sum_probs=35.3
Q ss_pred cccccccccEEeCCCCccCCCCCcc----ccCC-cCCcEEEccCccCccc----CcccccCCCCCCEEEccCCcCC
Q 003893 461 TFFNCLTLMILDLSYNHLNGNIPDR----VDGL-SQLSYLILAHNNLEGE----VPIQLCRLNQLQLLDLSNNNLH 527 (788)
Q Consensus 461 ~~~~~~~L~~L~l~~n~i~~~~~~~----~~~l-~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~ 527 (788)
.+...+.|+.|++++|.+.+..... +... ..+++|++..|.++.. +...+.....++.++++.|.+.
T Consensus 110 ~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l~ 185 (478)
T KOG4308|consen 110 ALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGLI 185 (478)
T ss_pred HhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHHhcccchhHHHHHhcccc
Confidence 3444556666666666665321111 1111 3455566666666533 2334445666777777777664
No 74
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=92.16 E-value=0.0047 Score=57.42 Aligned_cols=80 Identities=23% Similarity=0.251 Sum_probs=37.7
Q ss_pred CceEECCCCcccccCcccccccccCCeEeCCCCCCCCCCCcccCCCCCCCeeeCCCcccCccCchhhhcCCCCcEEeccc
Q 003893 593 LSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAY 672 (788)
Q Consensus 593 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~ 672 (788)
.+.||++.|++. .....|+-++.|..|+++.|.+. ..|..++.+..+..+++..|..+ ..|.++...+.++++++-+
T Consensus 44 ~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e~k~ 120 (326)
T KOG0473|consen 44 VTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNEQKK 120 (326)
T ss_pred eeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhhhcc
Confidence 344555555444 22233444444555555555544 34444444444555555544444 3444445555555555555
Q ss_pred CcC
Q 003893 673 NNL 675 (788)
Q Consensus 673 N~l 675 (788)
|++
T Consensus 121 ~~~ 123 (326)
T KOG0473|consen 121 TEF 123 (326)
T ss_pred Ccc
Confidence 443
No 75
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=91.93 E-value=0.08 Score=67.00 Aligned_cols=36 Identities=28% Similarity=0.444 Sum_probs=20.0
Q ss_pred cccCcCcccCCCCccccCCCCcCCcCCCCCCCCCCC
Q 003893 670 VAYNNLSGKIPERAAQFATFNESSYEGNPFLCGPPL 705 (788)
Q Consensus 670 l~~N~l~~~~~~~~~~~~~l~~~~~~~Np~~C~~~~ 705 (788)
|++|+|+...+..|..+.++..+++++|||.|+|.+
T Consensus 2 LSnN~LstLp~g~F~~L~sL~~LdLsgNPw~CDC~L 37 (2740)
T TIGR00864 2 ISNNKISTIEEGICANLCNLSEIDLSGNPFECDCGL 37 (2740)
T ss_pred CCCCcCCccChHHhccCCCceEEEeeCCcccccccc
Confidence 445555544444444455555555566666666665
No 76
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=90.70 E-value=2.1 Score=44.93 Aligned_cols=108 Identities=19% Similarity=0.120 Sum_probs=62.3
Q ss_pred CCCCCEEeCCCCCCCCccc-CCCCccCCCCCCCEEEcCCCCCCCCccHhh---hcCCCCCEEeCCCCcCcCCCChhhhcC
Q 003893 45 MPSIQYLSLSNSSVSNNSR-TLDQGLCPLVHLQELHMADNDLRGSLPWCL---ANMTSLRILDVSSNQLIGSISSSPLIH 120 (788)
Q Consensus 45 l~~L~~L~L~~~~l~~~~~-~l~~~l~~l~~L~~L~L~~n~i~~~~~~~~---~~l~~L~~L~Ls~n~l~~~~~~~~l~~ 120 (788)
-+.++++|++.+.+....+ ++++.... +.++.|..++.....+ ..-..++++|++.|...+.+|. .+..
T Consensus 164 npr~r~~dls~npi~dkvpihl~~p~~p------l~lr~c~lsskfis~l~~qsg~~~lteldls~n~~Kddip~-~~n~ 236 (553)
T KOG4242|consen 164 NPRARQHDLSPNPIGDKVPIHLPQPGNP------LSLRVCELSSKFISKLLIQSGRLWLTELDLSTNGGKDDIPR-TLNK 236 (553)
T ss_pred cchhhhhccCCCcccccCCccccCCCCc------cchhhhhhhhhHHHHhhhhhccccccccccccCCCCccchh-HHHH
Confidence 4568888999887755432 23233222 6777777664322221 1223588899999887777775 3322
Q ss_pred ---CCCCCEEEcCCCcccCccCcc--ccCCCCCccEEEccCCcc
Q 003893 121 ---LTSIEDLILSDNHFQIPISLE--PLFNHSRLKIFDAENNEI 159 (788)
Q Consensus 121 ---l~~L~~L~l~~n~~~~~~~~~--~l~~l~~L~~L~l~~n~~ 159 (788)
-.-++.++.+...++.+.... ..+..++|...+++.|..
T Consensus 237 ~a~~~vl~~ld~s~tgirlD~l~~~l~~g~~tkl~~~kls~ng~ 280 (553)
T KOG4242|consen 237 KAGTLVLFKLDRSTTGIRLDLLTSPLAAGRTTKLTFGKLSRNGT 280 (553)
T ss_pred hhhhhhhhcccccccccchhhcccccccccccccchhhhccCCC
Confidence 234777777776654222211 233456777777766654
No 77
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=90.56 E-value=0.21 Score=29.32 Aligned_cols=14 Identities=36% Similarity=0.681 Sum_probs=6.6
Q ss_pred cCCeEeCCCCCCCC
Q 003893 616 KIQTLNLSHNNLAG 629 (788)
Q Consensus 616 ~L~~L~Ls~N~l~~ 629 (788)
+|+.|+|++|+|+.
T Consensus 3 ~L~~L~L~~N~l~~ 16 (26)
T smart00369 3 NLRELDLSNNQLSS 16 (26)
T ss_pred CCCEEECCCCcCCc
Confidence 44444444444443
No 78
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=90.56 E-value=0.21 Score=29.32 Aligned_cols=14 Identities=36% Similarity=0.681 Sum_probs=6.6
Q ss_pred cCCeEeCCCCCCCC
Q 003893 616 KIQTLNLSHNNLAG 629 (788)
Q Consensus 616 ~L~~L~Ls~N~l~~ 629 (788)
+|+.|+|++|+|+.
T Consensus 3 ~L~~L~L~~N~l~~ 16 (26)
T smart00370 3 NLRELDLSNNQLSS 16 (26)
T ss_pred CCCEEECCCCcCCc
Confidence 44444444444443
No 79
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=89.76 E-value=0.25 Score=25.61 Aligned_cols=11 Identities=73% Similarity=0.948 Sum_probs=3.5
Q ss_pred CCEEEccCCcC
Q 003893 299 LQFLDLSNNQL 309 (788)
Q Consensus 299 L~~L~L~~n~i 309 (788)
|+.|++++|++
T Consensus 3 L~~L~l~~n~L 13 (17)
T PF13504_consen 3 LRTLDLSNNRL 13 (17)
T ss_dssp -SEEEETSS--
T ss_pred cCEEECCCCCC
Confidence 44444444443
No 80
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=88.48 E-value=0.47 Score=27.78 Aligned_cols=21 Identities=48% Similarity=0.532 Sum_probs=14.1
Q ss_pred CCCCEEEccCCcCCCccchHHh
Q 003893 297 NFLQFLDLSNNQLTGEIPEHLA 318 (788)
Q Consensus 297 ~~L~~L~L~~n~i~~~~~~~~~ 318 (788)
++|++|++++|+++ .+|...|
T Consensus 2 ~~L~~L~L~~N~l~-~lp~~~f 22 (26)
T smart00369 2 PNLRELDLSNNQLS-SLPPGAF 22 (26)
T ss_pred CCCCEEECCCCcCC-cCCHHHc
Confidence 56677777777776 6666655
No 81
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=88.48 E-value=0.47 Score=27.78 Aligned_cols=21 Identities=48% Similarity=0.532 Sum_probs=14.1
Q ss_pred CCCCEEEccCCcCCCccchHHh
Q 003893 297 NFLQFLDLSNNQLTGEIPEHLA 318 (788)
Q Consensus 297 ~~L~~L~L~~n~i~~~~~~~~~ 318 (788)
++|++|++++|+++ .+|...|
T Consensus 2 ~~L~~L~L~~N~l~-~lp~~~f 22 (26)
T smart00370 2 PNLRELDLSNNQLS-SLPPGAF 22 (26)
T ss_pred CCCCEEECCCCcCC-cCCHHHc
Confidence 56677777777776 6666655
No 82
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.96 E-value=0.2 Score=46.16 Aligned_cols=80 Identities=24% Similarity=0.214 Sum_probs=35.0
Q ss_pred CCEEeCCCCCCCCcccCCCCccCCCCCCCEEEcCCCCC-CCCccHhhh-cCCCCCEEeCCCCc-CcCCCChhhhcCCCCC
Q 003893 48 IQYLSLSNSSVSNNSRTLDQGLCPLVHLQELHMADNDL-RGSLPWCLA-NMTSLRILDVSSNQ-LIGSISSSPLIHLTSI 124 (788)
Q Consensus 48 L~~L~L~~~~l~~~~~~l~~~l~~l~~L~~L~L~~n~i-~~~~~~~~~-~l~~L~~L~Ls~n~-l~~~~~~~~l~~l~~L 124 (788)
++.+|-+++.|....- +-+..++.++.|.+.+|.- .+..-+.++ -.++|+.|++++|. |+ .-....+..+++|
T Consensus 103 IeaVDAsds~I~~eGl---e~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT-~~GL~~L~~lknL 178 (221)
T KOG3864|consen 103 IEAVDASDSSIMYEGL---EHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRIT-DGGLACLLKLKNL 178 (221)
T ss_pred EEEEecCCchHHHHHH---HHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeec-hhHHHHHHHhhhh
Confidence 4455555555433322 2344455555555555532 111111111 23556666666553 22 2222244555555
Q ss_pred CEEEcCC
Q 003893 125 EDLILSD 131 (788)
Q Consensus 125 ~~L~l~~ 131 (788)
+.|.+.+
T Consensus 179 r~L~l~~ 185 (221)
T KOG3864|consen 179 RRLHLYD 185 (221)
T ss_pred HHHHhcC
Confidence 5555544
No 83
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.41 E-value=0.099 Score=48.05 Aligned_cols=85 Identities=16% Similarity=0.122 Sum_probs=61.4
Q ss_pred CCCCEEEcCCCCCCCCccHhhhcCCCCCEEeCCCCcCcCCCChhhhc-CCCCCCEEEcCCCcccCccCccccCCCCCccE
Q 003893 73 VHLQELHMADNDLRGSLPWCLANMTSLRILDVSSNQLIGSISSSPLI-HLTSIEDLILSDNHFQIPISLEPLFNHSRLKI 151 (788)
Q Consensus 73 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~-~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~ 151 (788)
..++.+|-+++.|..+.-+.+..++.++.|.+.+|.-.+.-....++ -.++|+.|++++|.-..+.....+.++++|+.
T Consensus 101 ~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~ 180 (221)
T KOG3864|consen 101 VKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRR 180 (221)
T ss_pred ceEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHH
Confidence 45789999999998888888889999999999888533221111222 26789999999987333445556777888888
Q ss_pred EEccCC
Q 003893 152 FDAENN 157 (788)
Q Consensus 152 L~l~~n 157 (788)
|.+.+-
T Consensus 181 L~l~~l 186 (221)
T KOG3864|consen 181 LHLYDL 186 (221)
T ss_pred HHhcCc
Confidence 887654
No 84
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=87.01 E-value=0.024 Score=52.87 Aligned_cols=89 Identities=22% Similarity=0.314 Sum_probs=61.2
Q ss_pred ccccccccCCeEeCCCCCCCCCCCcccCCCCCCCeeeCCCcccCccCchhhhcCCCCcEEecccCcCcccCCCCccccCC
Q 003893 609 PQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSGKIPERAAQFAT 688 (788)
Q Consensus 609 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~ 688 (788)
..+......+.||++.|++.. ....|+-++.|..||++.|++. ..|.++.....+..+++.+|..+ ..|..+.+.+.
T Consensus 36 ~ei~~~kr~tvld~~s~r~vn-~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~ 112 (326)
T KOG0473|consen 36 REIASFKRVTVLDLSSNRLVN-LGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPH 112 (326)
T ss_pred hhhhccceeeeehhhhhHHHh-hccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCC
Confidence 345556677777887777763 3445666777777788877776 56777777777777777777766 45555677777
Q ss_pred CCcCCcCCCCCC
Q 003893 689 FNESSYEGNPFL 700 (788)
Q Consensus 689 l~~~~~~~Np~~ 700 (788)
....+..+||+.
T Consensus 113 ~k~~e~k~~~~~ 124 (326)
T KOG0473|consen 113 PKKNEQKKTEFF 124 (326)
T ss_pred cchhhhccCcch
Confidence 777777777654
No 85
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=86.64 E-value=0.15 Score=29.20 Aligned_cols=15 Identities=20% Similarity=0.510 Sum_probs=6.1
Q ss_pred CCCCEEEcCCCCCCC
Q 003893 73 VHLQELHMADNDLRG 87 (788)
Q Consensus 73 ~~L~~L~L~~n~i~~ 87 (788)
++|++|+|++|++++
T Consensus 2 ~~L~~L~l~~n~i~~ 16 (24)
T PF13516_consen 2 PNLETLDLSNNQITD 16 (24)
T ss_dssp TT-SEEE-TSSBEHH
T ss_pred CCCCEEEccCCcCCH
Confidence 344455555554443
No 86
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=86.17 E-value=0.0075 Score=65.23 Aligned_cols=138 Identities=27% Similarity=0.301 Sum_probs=65.8
Q ss_pred ccEEEcCCcccccCcc----chhHhhhcCCCCCEEeCCCCCCCCccc-CCCCccCCC-CCCCEEEcCCCCCCCC----cc
Q 003893 21 LKELYMDDARIALNTS----FLQIIGESMPSIQYLSLSNSSVSNNSR-TLDQGLCPL-VHLQELHMADNDLRGS----LP 90 (788)
Q Consensus 21 L~~L~L~~~~~~~~~~----~~~~~~~~l~~L~~L~L~~~~l~~~~~-~l~~~l~~l-~~L~~L~L~~n~i~~~----~~ 90 (788)
+..|.|.+ |.+... ...++.. ..+|..|++++|.+.+... .+-+.+... ..|++|++..|.+++. +.
T Consensus 89 l~~L~L~~--~~l~~~~~~~l~~~l~t-~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~ 165 (478)
T KOG4308|consen 89 LLHLSLAN--NRLGDRGAEELAQALKT-LPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLA 165 (478)
T ss_pred HHHhhhhh--CccccchHHHHHHHhcc-cccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHH
Confidence 56666666 443322 2233333 5566667777766653211 111122222 3456666666666554 33
Q ss_pred HhhhcCCCCCEEeCCCCcCcCC----CChhhhc----CCCCCCEEEcCCCcccCccC---ccccCCCCC-ccEEEccCCc
Q 003893 91 WCLANMTSLRILDVSSNQLIGS----ISSSPLI----HLTSIEDLILSDNHFQIPIS---LEPLFNHSR-LKIFDAENNE 158 (788)
Q Consensus 91 ~~~~~l~~L~~L~Ls~n~l~~~----~~~~~l~----~l~~L~~L~l~~n~~~~~~~---~~~l~~l~~-L~~L~l~~n~ 158 (788)
..+.....++.+|++.|.+... ++. .+. ...++++|++.+|.++.... ...+...+. +..+++..|.
T Consensus 166 ~~L~~~~~l~~l~l~~n~l~~~g~~~l~~-~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~ 244 (478)
T KOG4308|consen 166 AVLEKNEHLTELDLSLNGLIELGLLVLSQ-ALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNK 244 (478)
T ss_pred HHHhcccchhHHHHHhcccchhhhHHHhh-hhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcC
Confidence 4444566666666666654200 000 112 34556666776665541100 012233333 5556666666
Q ss_pred cchh
Q 003893 159 INAE 162 (788)
Q Consensus 159 ~~~~ 162 (788)
+.+.
T Consensus 245 l~d~ 248 (478)
T KOG4308|consen 245 LGDV 248 (478)
T ss_pred cchH
Confidence 6544
No 87
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=85.94 E-value=0.21 Score=28.63 Aligned_cols=16 Identities=44% Similarity=0.624 Sum_probs=8.2
Q ss_pred CCCCeeeCCCcccCcc
Q 003893 639 RNIESLDLSYNKLSWK 654 (788)
Q Consensus 639 ~~L~~L~Ls~N~l~~~ 654 (788)
++|++|+|++|+|+..
T Consensus 2 ~~L~~L~l~~n~i~~~ 17 (24)
T PF13516_consen 2 PNLETLDLSNNQITDE 17 (24)
T ss_dssp TT-SEEE-TSSBEHHH
T ss_pred CCCCEEEccCCcCCHH
Confidence 4566666666666543
No 88
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=73.52 E-value=2.5 Score=24.70 Aligned_cols=14 Identities=36% Similarity=0.446 Sum_probs=7.6
Q ss_pred CCCceEECCCCccc
Q 003893 591 SLLSGLDLSCNRLI 604 (788)
Q Consensus 591 ~~L~~L~Ls~n~l~ 604 (788)
++|+.|++++|+++
T Consensus 2 ~~L~~L~vs~N~Lt 15 (26)
T smart00364 2 PSLKELNVSNNQLT 15 (26)
T ss_pred cccceeecCCCccc
Confidence 34555555555554
No 89
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=72.87 E-value=2.8 Score=24.57 Aligned_cols=14 Identities=36% Similarity=0.674 Sum_probs=7.0
Q ss_pred ccCCeEeCCCCCCC
Q 003893 615 TKIQTLNLSHNNLA 628 (788)
Q Consensus 615 ~~L~~L~Ls~N~l~ 628 (788)
++|+.|+|++|+|+
T Consensus 2 ~~L~~L~L~~NkI~ 15 (26)
T smart00365 2 TNLEELDLSQNKIK 15 (26)
T ss_pred CccCEEECCCCccc
Confidence 34555555555554
No 90
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=65.54 E-value=3.9 Score=24.42 Aligned_cols=13 Identities=38% Similarity=0.685 Sum_probs=6.6
Q ss_pred CCCEEEcCCCCCC
Q 003893 74 HLQELHMADNDLR 86 (788)
Q Consensus 74 ~L~~L~L~~n~i~ 86 (788)
+|++|+|++|.+.
T Consensus 3 ~L~~LdL~~N~i~ 15 (28)
T smart00368 3 SLRELDLSNNKLG 15 (28)
T ss_pred ccCEEECCCCCCC
Confidence 4555555555544
No 91
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=63.29 E-value=4.7 Score=52.20 Aligned_cols=32 Identities=28% Similarity=0.395 Sum_probs=24.9
Q ss_pred eCCCCCCCCCCCcccCCCCCCCeeeCCCcccC
Q 003893 621 NLSHNNLAGPIPSTFSNLRNIESLDLSYNKLS 652 (788)
Q Consensus 621 ~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 652 (788)
||++|+|+.+.+..|..+++|+.|+|++|++.
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccc
Confidence 57788888777777778888888888888765
No 92
>PF15050 SCIMP: SCIMP protein
Probab=53.68 E-value=15 Score=30.35 Aligned_cols=30 Identities=23% Similarity=0.391 Sum_probs=18.1
Q ss_pred hhhhhhhhHHHHHHHhhhhhhhhhhhhhhh
Q 003893 735 ITFTTSYVIVIFGIVAVLYVNARWRRRWFY 764 (788)
Q Consensus 735 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 764 (788)
+.++++++++-+++..++|+.++|.+|...
T Consensus 10 iiLAVaII~vS~~lglIlyCvcR~~lRqGk 39 (133)
T PF15050_consen 10 IILAVAIILVSVVLGLILYCVCRWQLRQGK 39 (133)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence 334444444445556677888888876543
No 93
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=46.04 E-value=13 Score=21.58 Aligned_cols=9 Identities=56% Similarity=0.641 Sum_probs=3.3
Q ss_pred CCEEeCCCC
Q 003893 99 LRILDVSSN 107 (788)
Q Consensus 99 L~~L~Ls~n 107 (788)
|++|++++|
T Consensus 4 L~~L~l~~C 12 (26)
T smart00367 4 LRELDLSGC 12 (26)
T ss_pred CCEeCCCCC
Confidence 333333333
No 94
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=43.87 E-value=11 Score=40.82 Aligned_cols=61 Identities=31% Similarity=0.281 Sum_probs=37.1
Q ss_pred CCCceEECCCCcccccCc--ccccccccCCeEeCCCC--CCCCCCCcccCC--CCCCCeeeCCCcccCc
Q 003893 591 SLLSGLDLSCNRLIGHIP--PQIGNLTKIQTLNLSHN--NLAGPIPSTFSN--LRNIESLDLSYNKLSW 653 (788)
Q Consensus 591 ~~L~~L~Ls~n~l~~~~~--~~~~~l~~L~~L~Ls~N--~l~~~~~~~~~~--l~~L~~L~Ls~N~l~~ 653 (788)
+.+..++|++|++..... ..-...++|+.|+|++| .+.. ..++.. ...|++|-+.||++..
T Consensus 218 p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~--~~el~K~k~l~Leel~l~GNPlc~ 284 (585)
T KOG3763|consen 218 PEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISS--ESELDKLKGLPLEELVLEGNPLCT 284 (585)
T ss_pred cceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcc--hhhhhhhcCCCHHHeeecCCcccc
Confidence 357778888888763321 11123467888888888 4431 122222 2467888888888753
No 95
>smart00082 LRRCT Leucine rich repeat C-terminal domain.
Probab=39.70 E-value=14 Score=25.64 Aligned_cols=12 Identities=42% Similarity=0.805 Sum_probs=9.9
Q ss_pred CCCCCCCCCCCC
Q 003893 697 NPFLCGPPLPIC 708 (788)
Q Consensus 697 Np~~C~~~~~~~ 708 (788)
|||.|+|.+...
T Consensus 1 NP~~CdC~l~~~ 12 (51)
T smart00082 1 NPFICDCELRWL 12 (51)
T ss_pred CCccCcCCchHH
Confidence 899999997543
No 96
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=34.51 E-value=29 Score=37.70 Aligned_cols=12 Identities=42% Similarity=0.609 Sum_probs=6.7
Q ss_pred CCCCcEEEcccc
Q 003893 321 CVSLRSLALSNN 332 (788)
Q Consensus 321 l~~L~~L~l~~n 332 (788)
.|+|+.|+|++|
T Consensus 243 apklk~L~LS~N 254 (585)
T KOG3763|consen 243 APKLKTLDLSHN 254 (585)
T ss_pred cchhheeecccc
Confidence 455555555555
No 97
>PF15102 TMEM154: TMEM154 protein family
Probab=31.65 E-value=15 Score=32.20 Aligned_cols=16 Identities=19% Similarity=0.374 Sum_probs=7.1
Q ss_pred HHHHHhhhhhhhhhhh
Q 003893 745 IFGIVAVLYVNARWRR 760 (788)
Q Consensus 745 ~~~~~~~~~~~~~~~~ 760 (788)
++++++++++++|||.
T Consensus 72 Ll~vV~lv~~~kRkr~ 87 (146)
T PF15102_consen 72 LLSVVCLVIYYKRKRT 87 (146)
T ss_pred HHHHHHheeEEeeccc
Confidence 3334444444455544
No 98
>PHA03099 epidermal growth factor-like protein (EGF-like protein); Provisional
Probab=30.77 E-value=65 Score=27.36 Aligned_cols=27 Identities=22% Similarity=0.058 Sum_probs=13.3
Q ss_pred hhhHHHHHHHhhhhhhhhhhhhhhhhh
Q 003893 740 SYVIVIFGIVAVLYVNARWRRRWFYLV 766 (788)
Q Consensus 740 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 766 (788)
++.++++++++.+++.+|.|++.....
T Consensus 108 ~il~~i~is~~~~~~yr~~r~~~~~~~ 134 (139)
T PHA03099 108 LVLVGIIITCCLLSVYRFTRRTKLPLQ 134 (139)
T ss_pred HHHHHHHHHHHHHhhheeeecccCchh
Confidence 333444444445555566665555433
No 99
>PF05725 FNIP: FNIP Repeat; InterPro: IPR008615 This repeat is approximately 22 residues long and is only found in Dictyostelium discoideum (Slime mould). It appears to be related to IPR001611 from INTERPRO. The alignment consists of two tandem repeats. It is termed the FNIP repeat after the pattern of conserved residues.
Probab=29.29 E-value=65 Score=21.63 Aligned_cols=14 Identities=36% Similarity=0.582 Sum_probs=8.9
Q ss_pred CCccCCCceEECCC
Q 003893 587 GRVPSLLSGLDLSC 600 (788)
Q Consensus 587 ~~~~~~L~~L~Ls~ 600 (788)
+.+|++++.|.+++
T Consensus 8 ~~iP~~l~~L~~g~ 21 (44)
T PF05725_consen 8 GSIPSSLKSLIFGS 21 (44)
T ss_pred CeeCCCCeEEEECC
Confidence 45666777777743
No 100
>PTZ00370 STEVOR; Provisional
Probab=28.41 E-value=50 Score=32.63 Aligned_cols=21 Identities=19% Similarity=0.398 Sum_probs=9.5
Q ss_pred hhhHHHHHHHhhhhhhhhhhh
Q 003893 740 SYVIVIFGIVAVLYVNARWRR 760 (788)
Q Consensus 740 ~~~~~~~~~~~~~~~~~~~~~ 760 (788)
.+.++++||++++|+|.++|+
T Consensus 262 lvllil~vvliilYiwlyrrR 282 (296)
T PTZ00370 262 LVLLILAVVLIILYIWLYRRR 282 (296)
T ss_pred HHHHHHHHHHHHHHHHHHHhh
Confidence 333444444445555444443
No 101
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=28.30 E-value=47 Score=32.71 Aligned_cols=22 Identities=23% Similarity=0.409 Sum_probs=9.8
Q ss_pred hhhhHHHHHHHhhhhhhhhhhh
Q 003893 739 TSYVIVIFGIVAVLYVNARWRR 760 (788)
Q Consensus 739 ~~~~~~~~~~~~~~~~~~~~~~ 760 (788)
+.+.++++||++++|+|.++|+
T Consensus 265 alvllil~vvliiLYiWlyrrR 286 (295)
T TIGR01478 265 ALVLIILTVVLIILYIWLYRRR 286 (295)
T ss_pred HHHHHHHHHHHHHHHHHHHHhh
Confidence 3333444444445555444443
No 102
>PF07204 Orthoreo_P10: Orthoreovirus membrane fusion protein p10; InterPro: IPR009854 This family consists of several Orthoreovirus membrane fusion protein p10 sequences. p10 is thought to be a multifunctional protein that plays a key role in virus-host interaction [].
Probab=28.03 E-value=44 Score=26.51 Aligned_cols=29 Identities=10% Similarity=0.185 Sum_probs=18.9
Q ss_pred hhhhhhhhhhhhHHHHHHHhhhhhhhhhh
Q 003893 731 DIFFITFTTSYVIVIFGIVAVLYVNARWR 759 (788)
Q Consensus 731 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 759 (788)
.|.++..+.++++++++++.++.++.+|+
T Consensus 41 yWpyLA~GGG~iLilIii~Lv~CC~~K~K 69 (98)
T PF07204_consen 41 YWPYLAAGGGLILILIIIALVCCCRAKHK 69 (98)
T ss_pred hhHHhhccchhhhHHHHHHHHHHhhhhhh
Confidence 46777777777776666665666655554
No 103
>PRK00523 hypothetical protein; Provisional
Probab=23.10 E-value=1.2e+02 Score=22.97 Aligned_cols=21 Identities=14% Similarity=0.262 Sum_probs=9.9
Q ss_pred HHHHHHhhhhhhhhhhhhhhh
Q 003893 744 VIFGIVAVLYVNARWRRRWFY 764 (788)
Q Consensus 744 ~~~~~~~~~~~~~~~~~~~~~ 764 (788)
+++.+++.+++-+++..+|+.
T Consensus 15 li~G~~~Gffiark~~~k~l~ 35 (72)
T PRK00523 15 LIVGGIIGYFVSKKMFKKQIR 35 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333444445555555555443
Done!