Query 003893
Match_columns 788
No_of_seqs 649 out of 5047
Neff 10.5
Searched_HMMs 29240
Date Mon Mar 25 07:30:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003893.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003893hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 6.7E-73 2.3E-77 660.2 47.3 683 3-710 39-749 (768)
2 3rgz_A Protein brassinosteroid 100.0 5E-66 1.7E-70 602.3 40.7 593 13-677 94-741 (768)
3 1ziw_A TOLL-like receptor 3; i 100.0 3.1E-60 1.1E-64 549.5 50.1 594 22-708 7-631 (680)
4 1ziw_A TOLL-like receptor 3; i 100.0 2.6E-57 9E-62 525.0 50.8 583 19-680 25-626 (680)
5 3j0a_A TOLL-like receptor 5; m 100.0 1.3E-55 4.6E-60 519.8 37.9 522 45-705 23-565 (844)
6 3t6q_A CD180 antigen; protein- 100.0 5.2E-54 1.8E-58 490.7 39.3 541 23-705 16-565 (606)
7 3t6q_A CD180 antigen; protein- 100.0 8.4E-52 2.9E-56 472.4 45.1 519 19-680 33-564 (606)
8 3vq2_A TLR4, TOLL-like recepto 100.0 5.5E-52 1.9E-56 473.9 39.3 514 73-706 32-564 (606)
9 3j0a_A TOLL-like receptor 5; m 100.0 1.6E-51 5.3E-56 485.1 42.5 521 18-680 23-564 (844)
10 3vq2_A TLR4, TOLL-like recepto 100.0 3.7E-51 1.3E-55 467.1 39.0 532 22-681 14-563 (606)
11 2z63_A TOLL-like receptor 4, v 100.0 1.5E-45 5.2E-50 418.0 38.2 493 74-681 29-536 (570)
12 2z63_A TOLL-like receptor 4, v 100.0 2.4E-45 8.1E-50 416.4 32.7 466 175-706 29-537 (570)
13 2z81_A CD282 antigen, TOLL-lik 100.0 3.3E-45 1.1E-49 412.9 33.3 487 45-704 4-514 (549)
14 2z81_A CD282 antigen, TOLL-lik 100.0 1.3E-44 4.3E-49 408.1 35.7 495 21-680 7-514 (549)
15 4g8a_A TOLL-like receptor 4; l 100.0 1.4E-43 4.7E-48 407.9 40.7 542 74-731 53-622 (635)
16 4eco_A Uncharacterized protein 100.0 6.9E-45 2.4E-49 414.0 20.0 240 185-431 193-470 (636)
17 4g8a_A TOLL-like receptor 4; l 100.0 2.6E-42 8.8E-47 397.3 37.1 515 47-680 53-584 (635)
18 2z7x_B TOLL-like receptor 1, v 100.0 2.5E-43 8.5E-48 394.4 27.1 459 49-680 3-485 (520)
19 2z7x_B TOLL-like receptor 1, v 100.0 4.2E-43 1.4E-47 392.6 28.1 444 191-706 15-487 (520)
20 4ecn_A Leucine-rich repeat pro 100.0 1.1E-42 3.7E-47 401.0 30.9 439 199-705 323-871 (876)
21 4ecn_A Leucine-rich repeat pro 100.0 2.9E-42 1E-46 397.4 31.4 392 186-677 436-865 (876)
22 4eco_A Uncharacterized protein 100.0 1.3E-42 4.5E-47 395.2 27.2 415 199-680 81-604 (636)
23 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 6.3E-40 2.2E-44 369.6 27.0 463 45-680 30-514 (562)
24 3v47_A TOLL-like receptor 5B a 100.0 5.2E-39 1.8E-43 353.2 31.0 371 251-680 13-412 (455)
25 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 7.4E-40 2.5E-44 369.1 23.7 437 198-705 30-515 (562)
26 3v47_A TOLL-like receptor 5B a 100.0 9.2E-38 3.1E-42 343.3 31.4 382 203-656 14-412 (455)
27 1jl5_A Outer protein YOPM; leu 100.0 6.5E-37 2.2E-41 332.7 22.2 315 248-701 111-430 (454)
28 1jl5_A Outer protein YOPM; leu 100.0 4E-36 1.4E-40 326.4 28.1 385 199-701 11-410 (454)
29 2id5_A Lingo-1, leucine rich r 100.0 3.4E-36 1.2E-40 332.5 23.9 347 276-704 14-360 (477)
30 2id5_A Lingo-1, leucine rich r 100.0 8.3E-36 2.8E-40 329.4 25.1 348 251-682 14-362 (477)
31 1o6v_A Internalin A; bacterial 100.0 2.2E-34 7.5E-39 316.3 33.6 347 222-678 44-390 (466)
32 1o6v_A Internalin A; bacterial 100.0 6.8E-34 2.3E-38 312.4 33.0 346 197-653 44-389 (466)
33 3o6n_A APL1; leucine-rich repe 100.0 3.2E-34 1.1E-38 307.7 26.4 335 272-704 44-378 (390)
34 3bz5_A Internalin-J, INLJ; leu 100.0 1.3E-34 4.3E-39 314.9 23.4 361 191-683 34-394 (457)
35 3oja_B Anopheles plasmodium-re 100.0 3.4E-33 1.2E-37 316.2 26.4 335 272-704 50-384 (597)
36 3bz5_A Internalin-J, INLJ; leu 100.0 3.2E-32 1.1E-36 296.0 28.4 349 221-700 39-387 (457)
37 3o6n_A APL1; leucine-rich repe 100.0 1.8E-32 6E-37 294.2 24.7 315 295-705 43-357 (390)
38 4fmz_A Internalin; leucine ric 100.0 1.1E-31 3.8E-36 283.4 29.9 285 293-676 62-346 (347)
39 4fmz_A Internalin; leucine ric 100.0 2.3E-31 7.9E-36 280.9 30.2 305 246-652 42-346 (347)
40 1ogq_A PGIP-2, polygalacturona 100.0 1.8E-32 6.1E-37 283.6 19.1 258 370-707 50-311 (313)
41 3oja_B Anopheles plasmodium-re 100.0 9.3E-32 3.2E-36 304.4 24.6 314 295-704 49-362 (597)
42 1xku_A Decorin; proteoglycan, 100.0 9.2E-30 3.2E-34 266.3 30.0 291 298-674 32-330 (330)
43 2ft3_A Biglycan; proteoglycan, 100.0 5.2E-30 1.8E-34 268.3 25.9 290 298-674 34-331 (332)
44 1z7x_W Ribonuclease inhibitor; 100.0 2.6E-33 8.9E-38 308.5 -1.4 363 248-678 3-413 (461)
45 2ft3_A Biglycan; proteoglycan, 100.0 1.1E-29 3.8E-34 265.7 25.3 249 249-534 34-284 (332)
46 1xku_A Decorin; proteoglycan, 100.0 3.5E-29 1.2E-33 261.9 27.5 288 347-697 32-329 (330)
47 1z7x_W Ribonuclease inhibitor; 100.0 2.7E-33 9.4E-38 308.3 -4.0 310 199-528 3-355 (461)
48 1ogq_A PGIP-2, polygalacturona 100.0 1.6E-30 5.5E-35 268.9 14.7 249 347-675 51-303 (313)
49 3zyj_A Leucine-rich repeat-con 100.0 6.6E-28 2.3E-32 262.6 24.0 111 592-704 186-296 (440)
50 3zyi_A Leucine-rich repeat-con 100.0 8.7E-28 3E-32 262.6 23.5 111 592-704 197-307 (452)
51 2z80_A TOLL-like receptor 2, v 100.0 2.9E-28 1E-32 257.4 14.8 180 321-527 30-211 (353)
52 2z66_A Variable lymphocyte rec 100.0 1.5E-27 5.3E-32 246.6 19.3 249 349-678 10-263 (306)
53 2z66_A Variable lymphocyte rec 100.0 1.8E-27 6.3E-32 246.0 19.7 113 592-704 151-265 (306)
54 2z80_A TOLL-like receptor 2, v 100.0 5E-28 1.7E-32 255.5 15.1 283 296-656 30-318 (353)
55 3zyj_A Leucine-rich repeat-con 99.9 4.1E-26 1.4E-30 248.4 24.3 247 350-678 47-294 (440)
56 3zyi_A Leucine-rich repeat-con 99.9 4.6E-26 1.6E-30 249.0 24.4 87 592-678 219-305 (452)
57 3ogk_B Coronatine-insensitive 99.9 9.3E-29 3.2E-33 281.3 2.2 434 38-524 65-548 (592)
58 3ogk_B Coronatine-insensitive 99.9 1.2E-28 4.2E-33 280.3 3.2 377 246-678 110-528 (592)
59 1ozn_A Reticulon 4 receptor; N 99.9 3.3E-26 1.1E-30 233.8 19.4 234 371-682 33-267 (285)
60 1ozn_A Reticulon 4 receptor; N 99.9 5.2E-26 1.8E-30 232.4 18.8 224 276-527 14-238 (285)
61 4fcg_A Uncharacterized protein 99.9 1.4E-25 4.7E-30 233.2 20.8 235 345-676 80-314 (328)
62 4fcg_A Uncharacterized protein 99.9 2.7E-25 9.2E-30 231.0 19.0 224 394-699 81-313 (328)
63 3o53_A Protein LRIM1, AGAP0063 99.9 7.1E-27 2.4E-31 242.3 6.9 243 347-680 35-280 (317)
64 3o53_A Protein LRIM1, AGAP0063 99.9 2.5E-27 8.6E-32 245.7 2.5 256 350-696 14-271 (317)
65 3g06_A SSPH2 (leucine-rich rep 99.9 3.3E-24 1.1E-28 239.5 26.0 94 274-383 41-134 (622)
66 3g06_A SSPH2 (leucine-rich rep 99.9 6.2E-24 2.1E-28 237.2 27.8 114 249-383 41-154 (622)
67 3oja_A Leucine-rich immune mol 99.9 2.8E-26 9.5E-31 251.6 8.6 235 346-671 34-270 (487)
68 2o6q_A Variable lymphocyte rec 99.9 3.9E-24 1.3E-28 216.2 22.4 186 466-704 37-222 (270)
69 1wwl_A Monocyte differentiatio 99.9 1.7E-26 5.8E-31 238.8 4.8 154 466-677 149-310 (312)
70 2z62_A TOLL-like receptor 4, v 99.9 3E-24 1E-28 218.1 18.7 207 443-704 30-241 (276)
71 2p1m_B Transport inhibitor res 99.9 1E-27 3.5E-32 273.0 -7.9 82 592-673 457-541 (594)
72 2p1m_B Transport inhibitor res 99.9 2E-27 6.9E-32 270.5 -6.1 430 38-524 58-541 (594)
73 3oja_A Leucine-rich immune mol 99.9 4E-25 1.4E-29 242.4 11.9 248 367-705 31-287 (487)
74 1wwl_A Monocyte differentiatio 99.9 8.1E-26 2.8E-30 233.8 5.9 250 292-653 38-310 (312)
75 1p9a_G Platelet glycoprotein I 99.9 8.8E-24 3E-28 215.2 19.0 208 414-705 6-213 (290)
76 2z62_A TOLL-like receptor 4, v 99.9 1.8E-23 6.1E-28 212.4 20.7 208 395-680 29-241 (276)
77 2o6q_A Variable lymphocyte rec 99.9 1.7E-22 5.8E-27 204.2 22.4 167 461-680 56-222 (270)
78 3rfs_A Internalin B, repeat mo 99.9 2E-22 6.8E-27 203.8 17.7 209 391-687 38-246 (272)
79 1p9a_G Platelet glycoprotein I 99.9 5.9E-22 2E-26 201.7 20.0 205 366-678 6-210 (290)
80 3m19_A Variable lymphocyte rec 99.9 7.9E-22 2.7E-26 196.9 19.4 180 442-678 15-194 (251)
81 3rfs_A Internalin B, repeat mo 99.9 1.3E-21 4.3E-26 197.9 18.9 202 420-680 21-222 (272)
82 3m19_A Variable lymphocyte rec 99.9 1.2E-20 4.1E-25 188.3 20.4 181 466-702 14-194 (251)
83 3goz_A Leucine-rich repeat-con 99.9 2.1E-22 7.2E-27 212.8 7.3 87 592-678 197-299 (362)
84 2xwt_C Thyrotropin receptor; s 99.9 5.1E-21 1.8E-25 189.6 15.6 131 371-527 32-169 (239)
85 2xwt_C Thyrotropin receptor; s 99.9 4.2E-21 1.4E-25 190.2 14.8 196 395-673 32-236 (239)
86 4glp_A Monocyte differentiatio 99.8 6.7E-21 2.3E-25 196.7 14.6 202 417-676 90-307 (310)
87 3goz_A Leucine-rich repeat-con 99.8 3.9E-22 1.3E-26 210.8 5.4 269 302-659 3-304 (362)
88 2ca6_A RAN GTPase-activating p 99.8 1.6E-22 5.6E-27 216.1 0.3 89 592-680 217-320 (386)
89 1h6u_A Internalin H; cell adhe 99.8 3.9E-20 1.3E-24 190.3 18.0 194 392-678 39-232 (308)
90 2ast_B S-phase kinase-associat 99.8 1.3E-21 4.5E-26 205.2 5.7 234 370-684 70-314 (336)
91 2ast_B S-phase kinase-associat 99.8 1.2E-21 4.1E-26 205.5 4.9 200 298-525 48-258 (336)
92 4glp_A Monocyte differentiatio 99.8 2.9E-20 9.8E-25 192.0 13.7 227 199-431 64-307 (310)
93 2ca6_A RAN GTPase-activating p 99.8 8.5E-22 2.9E-26 210.5 2.0 244 387-703 25-319 (386)
94 1h6u_A Internalin H; cell adhe 99.8 1.2E-19 3.9E-24 186.8 17.3 193 368-653 39-231 (308)
95 2v9t_B SLIT homolog 2 protein 99.8 6.5E-20 2.2E-24 178.4 14.3 153 469-677 14-166 (220)
96 4ay9_X Follicle-stimulating ho 99.8 3.1E-19 1.1E-23 187.5 20.6 243 251-524 12-256 (350)
97 4ay9_X Follicle-stimulating ho 99.8 4.8E-20 1.7E-24 193.6 14.1 238 374-673 13-256 (350)
98 2xot_A Amphoterin-induced prot 99.8 3.9E-20 1.3E-24 195.1 12.7 180 469-704 21-206 (361)
99 2v70_A SLIT-2, SLIT homolog 2 99.8 2.2E-19 7.4E-24 174.7 14.3 157 468-680 13-170 (220)
100 3cvr_A Invasion plasmid antige 99.8 3.4E-19 1.2E-23 196.4 14.7 188 419-687 60-254 (571)
101 2o6s_A Variable lymphocyte rec 99.8 7.9E-19 2.7E-23 169.7 15.6 163 465-687 27-189 (208)
102 3e6j_A Variable lymphocyte rec 99.8 1E-18 3.5E-23 171.2 16.1 155 468-679 21-175 (229)
103 2v9t_B SLIT homolog 2 protein 99.8 2.1E-18 7.2E-23 167.7 16.3 158 493-706 14-171 (220)
104 2v70_A SLIT-2, SLIT homolog 2 99.8 2E-18 6.7E-23 167.9 15.7 114 592-705 58-171 (220)
105 2o6s_A Variable lymphocyte rec 99.8 3.1E-18 1E-22 165.5 15.1 162 442-664 29-190 (208)
106 1h6t_A Internalin B; cell adhe 99.8 1.3E-17 4.4E-22 169.8 17.7 174 415-679 43-216 (291)
107 2xot_A Amphoterin-induced prot 99.8 4.4E-18 1.5E-22 179.4 14.6 159 467-678 40-204 (361)
108 3e6j_A Variable lymphocyte rec 99.8 1.3E-17 4.6E-22 163.2 16.5 156 492-704 21-176 (229)
109 1m9s_A Internalin B; cell inva 99.7 1.6E-17 5.3E-22 185.5 14.9 81 592-678 132-212 (605)
110 3cvr_A Invasion plasmid antige 99.7 4.2E-17 1.4E-21 179.7 17.3 189 371-664 60-255 (571)
111 1h6t_A Internalin B; cell adhe 99.7 2.6E-17 9.1E-22 167.5 13.8 175 461-702 41-215 (291)
112 2wfh_A SLIT homolog 2 protein 99.7 2.8E-17 9.7E-22 155.9 12.4 117 589-706 29-145 (193)
113 4ezg_A Putative uncharacterize 99.7 5.2E-17 1.8E-21 155.1 12.6 155 462-677 40-195 (197)
114 1xeu_A Internalin C; cellular 99.7 3.7E-17 1.3E-21 163.6 11.5 154 461-680 36-189 (263)
115 1m9s_A Internalin B; cell inva 99.7 5.9E-17 2E-21 180.8 13.6 151 343-529 40-190 (605)
116 1w8a_A SLIT protein; signaling 99.7 1.1E-16 3.6E-21 152.0 13.1 131 469-655 11-142 (192)
117 1w8a_A SLIT protein; signaling 99.7 8.8E-17 3E-21 152.6 12.5 116 590-705 28-144 (192)
118 4ezg_A Putative uncharacterize 99.7 2.1E-16 7.3E-21 150.8 13.3 133 462-653 62-195 (197)
119 3sb4_A Hypothetical leucine ri 99.7 5E-17 1.7E-21 169.1 8.9 76 592-669 251-327 (329)
120 3sb4_A Hypothetical leucine ri 99.7 4.7E-17 1.6E-21 169.3 7.5 100 592-693 227-327 (329)
121 1xeu_A Internalin C; cellular 99.7 8.7E-17 3E-21 160.9 8.6 172 464-703 17-188 (263)
122 4fdw_A Leucine rich hypothetic 99.7 6.3E-15 2.1E-19 156.2 21.9 266 222-526 111-382 (401)
123 4fdw_A Leucine rich hypothetic 99.6 4.4E-15 1.5E-19 157.4 19.9 265 321-675 112-382 (401)
124 1dce_A Protein (RAB geranylger 99.6 1.9E-18 6.4E-23 191.8 -6.8 77 592-670 487-567 (567)
125 4fs7_A Uncharacterized protein 99.6 4.2E-15 1.4E-19 158.6 19.2 249 272-536 70-318 (394)
126 1dce_A Protein (RAB geranylger 99.6 4.9E-18 1.7E-22 188.5 -6.4 205 391-682 346-552 (567)
127 2o6r_A Variable lymphocyte rec 99.6 3.3E-15 1.1E-19 139.9 13.0 115 590-704 27-141 (177)
128 2ell_A Acidic leucine-rich nuc 99.6 2.8E-15 9.5E-20 139.1 11.2 86 592-677 72-161 (168)
129 2ell_A Acidic leucine-rich nuc 99.6 2.6E-15 8.9E-20 139.3 10.7 137 465-657 23-164 (168)
130 2wfh_A SLIT homolog 2 protein 99.6 1.1E-14 3.6E-19 138.1 14.1 87 592-678 55-141 (193)
131 2je0_A Acidic leucine-rich nuc 99.6 4.1E-15 1.4E-19 134.9 10.0 80 592-671 65-148 (149)
132 2o6r_A Variable lymphocyte rec 99.6 1.4E-14 4.7E-19 135.7 13.5 89 592-680 53-141 (177)
133 4fs7_A Uncharacterized protein 99.6 7.9E-14 2.7E-18 148.8 20.1 317 285-673 59-376 (394)
134 2je0_A Acidic leucine-rich nuc 99.6 5E-15 1.7E-19 134.3 9.0 129 465-648 16-149 (149)
135 4b8c_D Glucose-repressible alc 99.6 2.1E-15 7E-20 173.0 6.5 191 418-673 173-369 (727)
136 4b8c_D Glucose-repressible alc 99.5 1.1E-15 3.7E-20 175.3 3.9 219 394-677 173-405 (727)
137 3g39_A Variable lymphocyte rec 99.5 2.7E-14 9.2E-19 132.2 10.9 110 592-704 10-119 (170)
138 2r9u_A Variable lymphocyte rec 99.5 7.3E-14 2.5E-18 129.7 10.9 109 593-704 14-122 (174)
139 1a9n_A U2A', U2A'; complex (nu 99.5 1.3E-13 4.4E-18 128.8 11.1 83 592-676 65-153 (176)
140 1a9n_A U2A', U2A'; complex (nu 99.5 9.3E-14 3.2E-18 129.7 8.9 135 461-653 14-154 (176)
141 4gt6_A Cell surface protein; l 99.5 5.1E-12 1.7E-16 134.7 23.4 322 275-675 66-390 (394)
142 3g39_A Variable lymphocyte rec 99.4 5E-13 1.7E-17 123.7 12.1 90 591-680 30-119 (170)
143 1ds9_A Outer arm dynein; leuci 99.4 2.8E-15 9.5E-20 143.2 -5.4 156 462-677 14-186 (198)
144 4gt6_A Cell surface protein; l 99.4 1.2E-11 4E-16 131.9 22.0 135 458-652 257-391 (394)
145 2r9u_A Variable lymphocyte rec 99.4 1.3E-12 4.6E-17 121.1 12.1 91 590-680 32-122 (174)
146 1ds9_A Outer arm dynein; leuci 99.3 6.3E-15 2.1E-19 140.7 -7.4 154 486-699 14-184 (198)
147 2ifg_A High affinity nerve gro 99.3 2.8E-12 9.5E-17 134.5 9.7 109 594-705 11-121 (347)
148 2ifg_A High affinity nerve gro 99.2 2E-11 6.9E-16 127.8 9.3 112 592-704 32-145 (347)
149 4h09_A Hypothetical leucine ri 99.2 1.5E-09 5.1E-14 115.0 23.0 145 461-663 212-356 (379)
150 3un9_A NLR family member X1; l 99.2 8E-13 2.7E-17 138.6 -2.7 165 466-678 72-254 (372)
151 4h09_A Hypothetical leucine ri 99.2 1.4E-09 5E-14 115.2 22.4 299 272-673 45-343 (379)
152 3un9_A NLR family member X1; l 99.1 4E-12 1.4E-16 133.3 -2.8 135 297-431 101-252 (372)
153 2ra8_A Uncharacterized protein 98.7 8E-09 2.7E-13 107.1 6.0 162 461-674 167-341 (362)
154 2ra8_A Uncharacterized protein 98.6 4.3E-08 1.5E-12 101.6 5.9 207 19-259 107-341 (362)
155 1io0_A Tropomodulin; LRR prote 98.4 3.7E-08 1.3E-12 92.0 0.2 124 37-162 28-166 (185)
156 1io0_A Tropomodulin; LRR prote 98.3 1.1E-07 3.7E-12 88.8 1.5 119 14-135 31-164 (185)
157 3rw6_A Nuclear RNA export fact 98.3 2.1E-07 7.1E-12 91.1 2.3 39 72-110 169-209 (267)
158 3rw6_A Nuclear RNA export fact 98.1 2E-06 6.7E-11 84.2 5.9 66 613-680 168-237 (267)
159 3e4g_A ATP synthase subunit S, 98.0 7.8E-07 2.7E-11 80.4 0.8 84 73-158 61-150 (176)
160 3e4g_A ATP synthase subunit S, 98.0 2.2E-06 7.7E-11 77.4 3.1 84 46-133 61-150 (176)
161 3rfe_A Platelet glycoprotein I 98.0 8.9E-06 3E-10 70.2 6.1 42 664-705 32-73 (130)
162 1pgv_A TMD-1, tropomodulin TMD 97.1 0.00022 7.6E-09 65.6 3.1 63 612-674 95-168 (197)
163 3rfe_A Platelet glycoprotein I 96.9 0.0016 5.6E-08 55.9 7.0 55 595-651 12-67 (130)
164 1pgv_A TMD-1, tropomodulin TMD 96.8 0.00028 9.5E-09 65.0 1.4 61 592-652 99-170 (197)
165 2lz0_A Uncharacterized protein 63.6 6.7 0.00023 31.2 3.9 45 85-131 8-52 (100)
166 2lz0_A Uncharacterized protein 63.3 16 0.00054 29.0 6.1 45 334-379 8-52 (100)
167 2l9u_A Receptor tyrosine-prote 49.1 17 0.00059 21.6 2.9 24 735-758 10-33 (40)
168 2k1k_A Ephrin type-A receptor 33.9 25 0.00086 22.0 2.1 15 735-749 14-28 (38)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=6.7e-73 Score=660.22 Aligned_cols=683 Identities=29% Similarity=0.408 Sum_probs=575.3
Q ss_pred CCceeeecCCCCCCCCCCccEEEcCCcccccCcc---chhHhhhcCCCCCEEeCCCCCCCCcccCCCCccCCCCCCCEEE
Q 003893 3 NCEVNGVLSGQGFPHFKSLKELYMDDARIALNTS---FLQIIGESMPSIQYLSLSNSSVSNNSRTLDQGLCPLVHLQELH 79 (788)
Q Consensus 3 ~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~---~~~~~~~~l~~L~~L~L~~~~l~~~~~~l~~~l~~l~~L~~L~ 79 (788)
-|.|.|+.+. -.++++|+|++ ..+.+. ++..+.. +++|+.++++.+.+. .+|..++++++|++|+
T Consensus 39 ~C~w~gv~C~-----~~~v~~L~L~~--~~l~g~~~~l~~~l~~-L~~L~~l~~~~~~~~----~l~~~~~~l~~L~~L~ 106 (768)
T 3rgz_A 39 PCTFDGVTCR-----DDKVTSIDLSS--KPLNVGFSAVSSSLLS-LTGLESLFLSNSHIN----GSVSGFKCSASLTSLD 106 (768)
T ss_dssp GGGSTTEEEE-----TTEEEEEECTT--SCCCEEHHHHHHHTTT-CTTCCEEECTTSCEE----ECCCCCCCCTTCCEEE
T ss_pred CcCCcceEEC-----CCcEEEEECCC--CCcCCccCccChhHhc-cCcccccCCcCCCcC----CCchhhccCCCCCEEE
Confidence 4888888774 26899999999 777777 7888888 899999999887652 2447899999999999
Q ss_pred cCCCCCCCCccH--hhhcCCCCCEEeCCCCcCcCCCChhhhcCCCCCCEEEcCCCcccCccCcc--ccCCCCCccEEEcc
Q 003893 80 MADNDLRGSLPW--CLANMTSLRILDVSSNQLIGSISSSPLIHLTSIEDLILSDNHFQIPISLE--PLFNHSRLKIFDAE 155 (788)
Q Consensus 80 L~~n~i~~~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~--~l~~l~~L~~L~l~ 155 (788)
|++|.+.+.+|. .++++++|++|++++|.+.+.++...+.++++|++|++++|.+++..+.. .+.++++|++|+++
T Consensus 107 Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls 186 (768)
T 3rgz_A 107 LSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAIS 186 (768)
T ss_dssp CCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECC
T ss_pred CCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECC
Confidence 999999988888 89999999999999999988887633488999999999999998655422 17889999999999
Q ss_pred CCccchhhhccccCCCCcccccEEEccCCCcCCccCCccccCCCCCcEEEecCCCCCccCchHHhhcCCCCCEEEccCCc
Q 003893 156 NNEINAEIIESHSLTTPNFQLQSLLLSSGYRDGITFPKFLYNQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDS 235 (788)
Q Consensus 156 ~n~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 235 (788)
+|.+.+..+. ....+|++|++ .++...+.+|. +..+++|++|++++|.+++..+..+ .++++|++|++++|.
T Consensus 187 ~n~l~~~~~~-----~~l~~L~~L~L-s~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l-~~l~~L~~L~Ls~n~ 258 (768)
T 3rgz_A 187 GNKISGDVDV-----SRCVNLEFLDV-SSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAI-STCTELKLLNISSNQ 258 (768)
T ss_dssp SSEEESCCBC-----TTCTTCCEEEC-CSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHHHT-TTCSSCCEEECCSSC
T ss_pred CCcccccCCc-----ccCCcCCEEEC-cCCcCCCCCcc-cccCCCCCEEECcCCcCCCcccHHH-hcCCCCCEEECCCCc
Confidence 9998764332 33448999999 77888887777 9999999999999999988888775 899999999999999
Q ss_pred ccCcCccCccCCCCcCEEEccCCcCcccCChhhhhcCCCCcEEEeeCCcCCCCCCccccCCCCCCEEEccCCcCCCccch
Q 003893 236 LVGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPE 315 (788)
Q Consensus 236 ~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~ 315 (788)
+.+..+.. .+++|++|++++|.+++.+|..++..+++|++|++++|.+.+..|..++.+++|++|++++|.+++.+|.
T Consensus 259 l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~ 336 (768)
T 3rgz_A 259 FVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPM 336 (768)
T ss_dssp CEESCCCC--CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCH
T ss_pred ccCccCcc--ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCH
Confidence 98766554 8899999999999999899998887679999999999999999999999999999999999999889998
Q ss_pred HHhhCCCCCcEEEccccccCccccccccCCC-ccCceeccCccCcccCCccCCC--CCCCcEEEcccCcCCCCCCccccC
Q 003893 316 HLAMGCVSLRSLALSNNNLEGHMFSRNFNLT-NLIWLQLEGNHFVGEIPQSLSK--CSSLQGLFLSNNSLSGKIPRWLGN 392 (788)
Q Consensus 316 ~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~-~L~~L~l~~n~~~~~~~~~~~~--l~~L~~L~l~~n~l~~~~~~~l~~ 392 (788)
..+..+++|++|++++|.+.+..+..+.+++ +|++|++++|.+.+..+..+.. +++|++|++++|.+.+..|..+..
T Consensus 337 ~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~ 416 (768)
T 3rgz_A 337 DTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSN 416 (768)
T ss_dssp HHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGG
T ss_pred HHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhc
Confidence 8777899999999999999988888888887 9999999999999888887776 889999999999999999999999
Q ss_pred CCCccEEEccCCeeccCchhhhhcccCCcEEeccCCcCCCCCCCCC-CCCcccEEEccCcccccccCcccccccccccEE
Q 003893 393 LTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCY-DFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMIL 471 (788)
Q Consensus 393 l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~-~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L 471 (788)
+++|++|++++|.+.+..|..+..+++|+.|++++|.+.+..|..+ .+++|++|++++|.+.+.+|. .+.++++|++|
T Consensus 417 l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~-~l~~l~~L~~L 495 (768)
T 3rgz_A 417 CSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPS-GLSNCTNLNWI 495 (768)
T ss_dssp CTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCG-GGGGCTTCCEE
T ss_pred CCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCH-HHhcCCCCCEE
Confidence 9999999999999999999999999999999999999998888755 489999999999999988887 89999999999
Q ss_pred eCCCCccCCCCCccccCCcCCcEEEccCccCcccCcccccCCCCCCEEEccCCcCCccCcccccccchhhhccCCC----
Q 003893 472 DLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHERYNNGS---- 547 (788)
Q Consensus 472 ~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~---- 547 (788)
++++|++++.+|.++..+++|++|++++|++++.+|..+..+++|++|++++|++++.+|..+.............
T Consensus 496 ~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~ 575 (768)
T 3rgz_A 496 SLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRY 575 (768)
T ss_dssp ECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEE
T ss_pred EccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccc
Confidence 9999999999999999999999999999999999999999999999999999999999988765433111100000
Q ss_pred ------CCC---CcccceeecCCc-cc-CcccccccceEeeecCceeccc--CCccCCCceEECCCCcccccCccccccc
Q 003893 548 ------SLQ---PFETSFVIMGGM-DV-DPKKQILESFDFTTKSITYTYQ--GRVPSLLSGLDLSCNRLIGHIPPQIGNL 614 (788)
Q Consensus 548 ------~~~---~~~~~~~~~~~~-~~-~~~~~~l~~l~~~~~~~~~~~~--~~~~~~L~~L~Ls~n~l~~~~~~~~~~l 614 (788)
... ..........+. .. ..........++..+...-... ....++|+.||+++|++++.+|..++.+
T Consensus 576 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l 655 (768)
T 3rgz_A 576 VYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSM 655 (768)
T ss_dssp EEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGC
T ss_pred cccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhcc
Confidence 000 000000000000 00 0000011111111111111000 1112479999999999999999999999
Q ss_pred ccCCeEeCCCCCCCCCCCcccCCCCCCCeeeCCCcccCccCchhhhcCCCCcEEecccCcCcccCCCCccccCCCCcCCc
Q 003893 615 TKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSGKIPERAAQFATFNESSY 694 (788)
Q Consensus 615 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~~~~ 694 (788)
++|+.|+|++|++++.+|..|+++++|++|||++|++++.+|..+..+++|++||+++|+++|.+|+. .++.++...++
T Consensus 656 ~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~-~~~~~~~~~~~ 734 (768)
T 3rgz_A 656 PYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM-GQFETFPPAKF 734 (768)
T ss_dssp TTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSS-SSGGGSCGGGG
T ss_pred ccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCc-hhhccCCHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999986 78899999999
Q ss_pred CCCCCCCCCCCCCCCC
Q 003893 695 EGNPFLCGPPLPICIS 710 (788)
Q Consensus 695 ~~Np~~C~~~~~~~~~ 710 (788)
.|||..||.++. .|.
T Consensus 735 ~gN~~Lcg~~l~-~C~ 749 (768)
T 3rgz_A 735 LNNPGLCGYPLP-RCD 749 (768)
T ss_dssp CSCTEEESTTSC-CCC
T ss_pred cCCchhcCCCCc-CCC
Confidence 999999998876 443
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=5e-66 Score=602.29 Aligned_cols=593 Identities=27% Similarity=0.383 Sum_probs=476.4
Q ss_pred CCCCCCCCccEEEcCCcccccCccchh--HhhhcCCCCCEEeCCCCCCCCcccCCCCc-cCCCCCCCEEEcCCCCCCCCc
Q 003893 13 QGFPHFKSLKELYMDDARIALNTSFLQ--IIGESMPSIQYLSLSNSSVSNNSRTLDQG-LCPLVHLQELHMADNDLRGSL 89 (788)
Q Consensus 13 ~~l~~l~~L~~L~L~~~~~~~~~~~~~--~~~~~l~~L~~L~L~~~~l~~~~~~l~~~-l~~l~~L~~L~L~~n~i~~~~ 89 (788)
+.|.++++|++|+|++ +.+.+.+|. .++. +++|++|++++|.+.+..+ .. +.++++|++|++++|++++..
T Consensus 94 ~~~~~l~~L~~L~Ls~--n~l~~~~~~~~~l~~-l~~L~~L~Ls~n~l~~~~~---~~~~~~l~~L~~L~Ls~n~l~~~~ 167 (768)
T 3rgz_A 94 SGFKCSASLTSLDLSR--NSLSGPVTTLTSLGS-CSGLKFLNVSSNTLDFPGK---VSGGLKLNSLEVLDLSANSISGAN 167 (768)
T ss_dssp CCCCCCTTCCEEECCS--SEEEEEGGGGGGGGG-CTTCCEEECCSSEEECCSS---CCSCCCCTTCSEEECCSSCCEEET
T ss_pred hhhccCCCCCEEECCC--CcCCCcCCChHHHhC-CCCCCEEECcCCccCCcCC---HHHhccCCCCCEEECCCCccCCcC
Confidence 4688888888888888 666676776 7777 8888888888888766554 33 377888888888888888777
Q ss_pred cHh---hhcCCCCCEEeCCCCcCcCCCChhhhcCCCCCCEEEcCCCcccCccCccccCCCCCccEEEccCCccchhhhcc
Q 003893 90 PWC---LANMTSLRILDVSSNQLIGSISSSPLIHLTSIEDLILSDNHFQIPISLEPLFNHSRLKIFDAENNEINAEIIES 166 (788)
Q Consensus 90 ~~~---~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~ 166 (788)
|.. +.++++|++|++++|.+.+..+ +..+++|++|++++|.+++.++. +.++++|++|++++|.+.+..+..
T Consensus 168 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~---~~~l~~L~~L~Ls~n~l~~~~~~--l~~l~~L~~L~Ls~n~l~~~~~~~ 242 (768)
T 3rgz_A 168 VVGWVLSDGCGELKHLAISGNKISGDVD---VSRCVNLEFLDVSSNNFSTGIPF--LGDCSALQHLDISGNKLSGDFSRA 242 (768)
T ss_dssp HHHHHHTTCCTTCCEEECCSSEEESCCB---CTTCTTCCEEECCSSCCCSCCCB--CTTCCSCCEEECCSSCCCSCHHHH
T ss_pred ChhhhhhccCCCCCEEECCCCcccccCC---cccCCcCCEEECcCCcCCCCCcc--cccCCCCCEEECcCCcCCCcccHH
Confidence 766 6788888888888888876544 37788888888888888766653 788888888888888887655544
Q ss_pred ccCCCCcccccEEEccCCCcCCccCCccccCCCCCcEEEecCCCCCccCchHHhhcCCCCCEEEccCCcccCcCccCccC
Q 003893 167 HSLTTPNFQLQSLLLSSGYRDGITFPKFLYNQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDSLVGPFRLPIHS 246 (788)
Q Consensus 167 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~ 246 (788)
+ ....+|++|++ ..+...+..|.. .+++|++|++++|.+++.+|..+...+++|++|++++|.+++..+..+..
T Consensus 243 l---~~l~~L~~L~L-s~n~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~ 316 (768)
T 3rgz_A 243 I---STCTELKLLNI-SSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGS 316 (768)
T ss_dssp T---TTCSSCCEEEC-CSSCCEESCCCC--CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGG
T ss_pred H---hcCCCCCEEEC-CCCcccCccCcc--ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhc
Confidence 3 23347888888 666666666655 77888888888888887788776555688888888888888888888888
Q ss_pred CCCcCEEEccCCcCcccCChhhhhcCCCCcEEEeeCCcCCCCCCccccCCC-CCCEEEccCCcCCCccchHHhh-CCCCC
Q 003893 247 HKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMN-FLQFLDLSNNQLTGEIPEHLAM-GCVSL 324 (788)
Q Consensus 247 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~L~~n~i~~~~~~~~~~-~l~~L 324 (788)
+++|++|++++|.+.+.+|...+..+++|++|++++|.+.+.+|..+..++ +|++|++++|.+++.+|..+.. .+++|
T Consensus 317 l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L 396 (768)
T 3rgz_A 317 CSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTL 396 (768)
T ss_dssp CTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCC
T ss_pred CCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCc
Confidence 888888888888888788877555578888888888888877888887776 8888888888887666666542 15678
Q ss_pred cEEEccccccCccccccccCCCccCceeccCccCcccCCccCCCCCCCcEEEcccCcCCCCCCccccCCCCccEEEccCC
Q 003893 325 RSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKN 404 (788)
Q Consensus 325 ~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n 404 (788)
++|++++|.+++..+..+.++++|++|++++|.+.+..|..+..+++|+.|++++|.+.+..|..+..+++|++|++++|
T Consensus 397 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N 476 (768)
T 3rgz_A 397 QELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFN 476 (768)
T ss_dssp CEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSS
T ss_pred cEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCC
Confidence 88888888888777888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred eeccCchhhhhcccCCcEEeccCCcCCCCCCCCC-CCCcccEEEccCcccccccCcccccccccccEEeCCCCccCCCCC
Q 003893 405 HIEGPIPLEFCQLRILQILDISDNNISGSLPSCY-DFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIP 483 (788)
Q Consensus 405 ~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~-~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~ 483 (788)
.+.+..|..+..+++|++|++++|++.+..|..+ .+++|+.|++++|.+.+.+|. .+..+++|++|++++|++.+.+|
T Consensus 477 ~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~-~l~~l~~L~~L~Ls~N~l~g~ip 555 (768)
T 3rgz_A 477 DLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPA-ELGDCRSLIWLDLNTNLFNGTIP 555 (768)
T ss_dssp CCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCG-GGGGCTTCCEEECCSSEEESBCC
T ss_pred cccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCH-HHcCCCCCCEEECCCCccCCcCC
Confidence 8888888888888888888888888887777655 478888888888888877776 78888888888888888887777
Q ss_pred ccccCCcCCc----------------------------------------------EEEccCccCcccCcccccCCCCCC
Q 003893 484 DRVDGLSQLS----------------------------------------------YLILAHNNLEGEVPIQLCRLNQLQ 517 (788)
Q Consensus 484 ~~~~~l~~L~----------------------------------------------~L~L~~n~l~~~~~~~~~~l~~L~ 517 (788)
..+.....+. .+++..|.+.+..|..+..+++|+
T Consensus 556 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~ 635 (768)
T 3rgz_A 556 AAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMM 635 (768)
T ss_dssp GGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCC
T ss_pred hHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhcccccc
Confidence 7655433322 233344556666777788889999
Q ss_pred EEEccCCcCCccCcccccccchhhhccCCCCCCCcccceeecCCcccCcccccccceEeeecCceecccCCccCCCceEE
Q 003893 518 LLDLSNNNLHGHIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLD 597 (788)
Q Consensus 518 ~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~ 597 (788)
.||+++|++++.+|..+..++ .|+.|+
T Consensus 636 ~LdLs~N~l~g~ip~~l~~l~-----------------------------------------------------~L~~L~ 662 (768)
T 3rgz_A 636 FLDMSYNMLSGYIPKEIGSMP-----------------------------------------------------YLFILN 662 (768)
T ss_dssp EEECCSSCCBSCCCGGGGGCT-----------------------------------------------------TCCEEE
T ss_pred EEECcCCcccccCCHHHhccc-----------------------------------------------------cCCEEe
Confidence 999999999999998887776 899999
Q ss_pred CCCCcccccCcccccccccCCeEeCCCCCCCCCCCcccCCCCCCCeeeCCCcccCccCchhhhcCCCCcEEecccCcCcc
Q 003893 598 LSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSG 677 (788)
Q Consensus 598 Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~ 677 (788)
|++|.+++.+|..++.+++|+.|||++|++++.+|..++.+++|++||+++|++++.+|.. ..+.++....+.+|+--|
T Consensus 663 Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~-~~~~~~~~~~~~gN~~Lc 741 (768)
T 3rgz_A 663 LGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM-GQFETFPPAKFLNNPGLC 741 (768)
T ss_dssp CCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSS-SSGGGSCGGGGCSCTEEE
T ss_pred CcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCc-hhhccCCHHHhcCCchhc
Confidence 9999999999999999999999999999999999999999999999999999999999975 334455556677886443
No 3
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=3.1e-60 Score=549.49 Aligned_cols=594 Identities=20% Similarity=0.222 Sum_probs=481.6
Q ss_pred cEEEcCCcccccCccchhHhhhcCCCCCEEeCCCCCCCCcccCCCCccCCCCCCCEEEcCCCCCCCCccHhhhcCCCCCE
Q 003893 22 KELYMDDARIALNTSFLQIIGESMPSIQYLSLSNSSVSNNSRTLDQGLCPLVHLQELHMADNDLRGSLPWCLANMTSLRI 101 (788)
Q Consensus 22 ~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~l~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~ 101 (788)
+.++.++ ..+. .+|..+. +++++|++++|.+.+..+ ..+.++++|++|++++|.+++..|..|+++++|++
T Consensus 7 ~~~~cs~--~~L~-~ip~~~~---~~l~~L~Ls~n~l~~~~~---~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 77 (680)
T 1ziw_A 7 EVADCSH--LKLT-QVPDDLP---TNITVLNLTHNQLRRLPA---ANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKV 77 (680)
T ss_dssp SEEECCS--SCCS-SCCSCSC---TTCSEEECCSSCCCCCCG---GGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCE
T ss_pred CeeECCC--CCcc-ccccccC---CCCcEEECCCCCCCCcCH---HHHhCCCcCcEEECCCCccCccCHHHHhcccCcCE
Confidence 4566666 3332 2343333 478899999888876554 56888889999999999888888888889999999
Q ss_pred EeCCCCcCcCCCChhhhcCCCCCCEEEcCCCcccCccCccccCCCCCccEEEccCCccchhhhccccCCCCcccccEEEc
Q 003893 102 LDVSSNQLIGSISSSPLIHLTSIEDLILSDNHFQIPISLEPLFNHSRLKIFDAENNEINAEIIESHSLTTPNFQLQSLLL 181 (788)
Q Consensus 102 L~Ls~n~l~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l 181 (788)
|++++|.+. .+|...|.++++|++|++++|.+++ ++...+.++++|++|++++|.+.+
T Consensus 78 L~L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~-------------------- 135 (680)
T 1ziw_A 78 LNLQHNELS-QLSDKTFAFCTNLTELHLMSNSIQK-IKNNPFVKQKNLITLDLSHNGLSS-------------------- 135 (680)
T ss_dssp EECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCC-CCSCTTTTCTTCCEEECCSSCCSC--------------------
T ss_pred EECCCCccC-ccChhhhccCCCCCEEECCCCccCc-cChhHccccCCCCEEECCCCcccc--------------------
Confidence 999988887 5565468888999999999888864 443567888888888888887532
Q ss_pred cCCCcCCccCCccccCCCCCcEEEecCCCCCccCchHH-hhcCCCCCEEEccCCcccCcCccCccCCCCcCEEEccCCcC
Q 003893 182 SSGYRDGITFPKFLYNQHDLEYVRLSHIKMNEEFPNWL-LENNTKLRQLSLVNDSLVGPFRLPIHSHKQLRLLDVSKNNF 260 (788)
Q Consensus 182 ~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l 260 (788)
..+..+..+++|++|++++|.+++..+..+ ...+++|++|++++|.+++..+..+..+++|+.++++++.+
T Consensus 136 --------~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l 207 (680)
T 1ziw_A 136 --------TKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQL 207 (680)
T ss_dssp --------CCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCC
T ss_pred --------cCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhcccccc
Confidence 234456678889999999998876655543 12568899999999998888888888888999999988877
Q ss_pred cccCChhhhh--cCCCCcEEEeeCCcCCCCCCccccCCCC--CCEEEccCCcCCCccchHHhhCCCCCcEEEccccccCc
Q 003893 261 QGHIPLEIGD--ILSRLTVFNISMNALDGSIPSSFGNMNF--LQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEG 336 (788)
Q Consensus 261 ~~~~~~~~~~--~~~~L~~L~L~~n~l~~~~~~~~~~l~~--L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~l~~n~i~~ 336 (788)
.......+.. ..++|++|++++|.+.+..+..+..++. |++|++++|.++ .++...+..+++|++|++++|.+.+
T Consensus 208 ~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~ 286 (680)
T 1ziw_A 208 GPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLN-VVGNDSFAWLPQLEYFFLEYNNIQH 286 (680)
T ss_dssp HHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCC-EECTTTTTTCTTCCEEECCSCCBSE
T ss_pred ChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcC-ccCcccccCcccccEeeCCCCccCc
Confidence 5332222211 1368999999999998888888887755 999999999988 5554455678999999999999988
Q ss_pred cccccccCCCccCceeccCccCcc-----cCC----ccCCCCCCCcEEEcccCcCCCCCCccccCCCCccEEEccCCeec
Q 003893 337 HMFSRNFNLTNLIWLQLEGNHFVG-----EIP----QSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIE 407 (788)
Q Consensus 337 ~~~~~~~~l~~L~~L~l~~n~~~~-----~~~----~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~ 407 (788)
..+..+.++++|++|++++|...+ .+| ..|..+++|++|++++|.+.+..+..+..+++|++|++++|.+.
T Consensus 287 ~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~ 366 (680)
T 1ziw_A 287 LFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTS 366 (680)
T ss_dssp ECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSC
T ss_pred cChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchh
Confidence 888888899999999998875442 122 36788999999999999999888888999999999999998753
Q ss_pred c--Cchhhhhcc--cCCcEEeccCCcCCCCCCCCC-CCCcccEEEccCcccccccCcccccccccccEEeCCCCccCCCC
Q 003893 408 G--PIPLEFCQL--RILQILDISDNNISGSLPSCY-DFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNI 482 (788)
Q Consensus 408 ~--~~~~~~~~l--~~L~~L~l~~n~~~~~~~~~~-~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~ 482 (788)
. .....|..+ ++|+.|++++|++.+..+..+ .+++|+.|++++|.+.+.++...|.++++|++|++++|++.+..
T Consensus 367 ~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 446 (680)
T 1ziw_A 367 LRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLT 446 (680)
T ss_dssp CCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECC
T ss_pred hhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeC
Confidence 2 223344433 589999999999988777655 48999999999999988888778999999999999999998888
Q ss_pred CccccCCcCCcEEEccCccCc--ccCcccccCCCCCCEEEccCCcCCccCcccccccchhhhccCCCCCCCcccceeecC
Q 003893 483 PDRVDGLSQLSYLILAHNNLE--GEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHERYNNGSSLQPFETSFVIMG 560 (788)
Q Consensus 483 ~~~~~~l~~L~~L~L~~n~l~--~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 560 (788)
+..|..+++|+.|++++|.+. +..|..+..+++|++|++++|++++..+..|..+.
T Consensus 447 ~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~---------------------- 504 (680)
T 1ziw_A 447 RNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLE---------------------- 504 (680)
T ss_dssp TTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCT----------------------
T ss_pred hhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhcccc----------------------
Confidence 889999999999999999986 46788899999999999999999988887776665
Q ss_pred CcccCcccccccceEeeecCceecccCCccCCCceEECCCCcccccCc--------ccccccccCCeEeCCCCCCCCCCC
Q 003893 561 GMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIP--------PQIGNLTKIQTLNLSHNNLAGPIP 632 (788)
Q Consensus 561 ~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~--------~~~~~l~~L~~L~Ls~N~l~~~~~ 632 (788)
+|++|++++|.+++..+ ..|.++++|+.|+|++|+++.+.+
T Consensus 505 -------------------------------~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~ 553 (680)
T 1ziw_A 505 -------------------------------KLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPV 553 (680)
T ss_dssp -------------------------------TCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCT
T ss_pred -------------------------------ccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCH
Confidence 89999999999986522 347889999999999999997767
Q ss_pred cccCCCCCCCeeeCCCcccCccCchhhhcCCCCcEEecccCcCcccCCCCcc-ccCCCCcCCcCCCCCCCCCCC-CCC
Q 003893 633 STFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSGKIPERAA-QFATFNESSYEGNPFLCGPPL-PIC 708 (788)
Q Consensus 633 ~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~-~~~~l~~~~~~~Np~~C~~~~-~~~ 708 (788)
..|.++++|++|++++|++++..+..|..+++|+.|++++|++++..|..+. .+++++.+++.+|||.|+|+. .+.
T Consensus 554 ~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~~~~~~ 631 (680)
T 1ziw_A 554 EVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAWF 631 (680)
T ss_dssp TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCCCCSSE
T ss_pred HHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCCccHHHH
Confidence 7899999999999999999987777889999999999999999998887776 789999999999999999985 443
No 4
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=2.6e-57 Score=525.00 Aligned_cols=583 Identities=21% Similarity=0.175 Sum_probs=400.9
Q ss_pred CCccEEEcCCcccccCccchhHhhhcCCCCCEEeCCCCCCCCcccCCCCccCCCCCCCEEEcCCCCCCCCccHhhhcCCC
Q 003893 19 KSLKELYMDDARIALNTSFLQIIGESMPSIQYLSLSNSSVSNNSRTLDQGLCPLVHLQELHMADNDLRGSLPWCLANMTS 98 (788)
Q Consensus 19 ~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~l~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~ 98 (788)
+++++|++++ +.+.+..+..+.. +++|++|++++|.+.+..+ ..+.++++|++|+|++|++++..+..|+++++
T Consensus 25 ~~l~~L~Ls~--n~l~~~~~~~~~~-l~~L~~L~Ls~n~l~~~~~---~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~ 98 (680)
T 1ziw_A 25 TNITVLNLTH--NQLRRLPAANFTR-YSQLTSLDVGFNTISKLEP---ELCQKLPMLKVLNLQHNELSQLSDKTFAFCTN 98 (680)
T ss_dssp TTCSEEECCS--SCCCCCCGGGGGG-GTTCSEEECCSSCCCCCCT---THHHHCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred CCCcEEECCC--CCCCCcCHHHHhC-CCcCcEEECCCCccCccCH---HHHhcccCcCEEECCCCccCccChhhhccCCC
Confidence 6899999999 6777777777888 9999999999999987665 67899999999999999999777778999999
Q ss_pred CCEEeCCCCcCcCCCChhhhcCCCCCCEEEcCCCcccCccCccccCCCCCccEEEccCCccchhhhccccCCCCcccccE
Q 003893 99 LRILDVSSNQLIGSISSSPLIHLTSIEDLILSDNHFQIPISLEPLFNHSRLKIFDAENNEINAEIIESHSLTTPNFQLQS 178 (788)
Q Consensus 99 L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~ 178 (788)
|++|++++|.+.+ ++...++++++|++|++++|.+++..+ ..+.++++|++|++++|.+.+..+..+.. ....+|++
T Consensus 99 L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-~~~~~L~~ 175 (680)
T 1ziw_A 99 LTELHLMSNSIQK-IKNNPFVKQKNLITLDLSHNGLSSTKL-GTQVQLENLQELLLSNNKIQALKSEELDI-FANSSLKK 175 (680)
T ss_dssp CSEEECCSSCCCC-CCSCTTTTCTTCCEEECCSSCCSCCCC-CSSSCCTTCCEEECCSSCCCCBCHHHHGG-GTTCEESE
T ss_pred CCEEECCCCccCc-cChhHccccCCCCEEECCCCcccccCc-hhhcccccCCEEEccCCcccccCHHHhhc-cccccccE
Confidence 9999999999984 554389999999999999999986544 57889999999999999876543332111 01124444
Q ss_pred EEccCCCcCCccCCccccCCCCCcEEEecCCCCCccCchHHhhcCCCCCEEEccCCcccCcCccCccCCCCcCEEEccCC
Q 003893 179 LLLSSGYRDGITFPKFLYNQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDSLVGPFRLPIHSHKQLRLLDVSKN 258 (788)
Q Consensus 179 L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n 258 (788)
|++ ..+...+..+..+..+.+|+.+++.++.+.+.....+.. . ...++|+.|++++|
T Consensus 176 L~L-~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~---------------------~-l~~~~L~~L~L~~n 232 (680)
T 1ziw_A 176 LEL-SSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCL---------------------E-LANTSIRNLSLSNS 232 (680)
T ss_dssp EEC-TTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHH---------------------H-HTTSCCCEEECTTS
T ss_pred EEC-CCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHH---------------------H-hhhccccEEEccCC
Confidence 554 333444444444444444444444444432211111100 0 01244555555555
Q ss_pred cCcccCChhhhhc-CCCCcEEEeeCCcCCCCCCccccCCCCCCEEEccCCcCCCccchHHhhCCCCCcEEEccccccC--
Q 003893 259 NFQGHIPLEIGDI-LSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLE-- 335 (788)
Q Consensus 259 ~l~~~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~l~~n~i~-- 335 (788)
.+.+..|..+... .++|++|++++|.+.+..+..|..+++|++|++++|.++ .++...+.++++|++|++++|...
T Consensus 233 ~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~~~~~~~ 311 (680)
T 1ziw_A 233 QLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQ-HLFSHSLHGLFNVRYLNLKRSFTKQS 311 (680)
T ss_dssp CCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBS-EECTTTTTTCTTCCEEECTTCBCCC-
T ss_pred cccccChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccC-ccChhhhcCCCCccEEeccchhhhcc
Confidence 5544333333321 123555555555555444455555555555555555555 222222334555555555544322
Q ss_pred -------ccccccccCCCccCceeccCccCcccCCccCCCCCCCcEEEcccCcCCC--CCCccccC--CCCccEEEccCC
Q 003893 336 -------GHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSG--KIPRWLGN--LTVLRHIIMPKN 404 (788)
Q Consensus 336 -------~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~--~~~~~l~~--l~~L~~L~l~~n 404 (788)
......+..+++|++|++++|.+.+..+..|.++++|++|++++|.+.. .....+.. .++|+.|++++|
T Consensus 312 ~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n 391 (680)
T 1ziw_A 312 ISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKN 391 (680)
T ss_dssp -----CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTS
T ss_pred cccccccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCC
Confidence 1112245556666666666666666666666666666666666665331 11122222 246677777777
Q ss_pred eeccCchhhhhcccCCcEEeccCCcCCCCCC--CCCCCCcccEEEccCcccccccCcccccccccccEEeCCCCccC--C
Q 003893 405 HIEGPIPLEFCQLRILQILDISDNNISGSLP--SCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLN--G 480 (788)
Q Consensus 405 ~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~--~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~i~--~ 480 (788)
.+.+..+.++..+++|+.|++++|.+.+..+ .+..+++|++|++++|.+.+. +...|..+++|++|++++|.+. +
T Consensus 392 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~~~~L~~L~l~~n~l~~~~ 470 (680)
T 1ziw_A 392 KISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQL-TRNSFALVPSLQRLMLRRVALKNVD 470 (680)
T ss_dssp CCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEEC-CTTTTTTCTTCCEEECTTSCCBCTT
T ss_pred CCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCccee-ChhhhhcCcccccchhccccccccc
Confidence 7766666666677777777777776665443 223466777777777776543 3348888999999999999886 4
Q ss_pred CCCccccCCcCCcEEEccCccCcccCcccccCCCCCCEEEccCCcCCccCcccccccchhhhccCCCCCCCcccceeecC
Q 003893 481 NIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHERYNNGSSLQPFETSFVIMG 560 (788)
Q Consensus 481 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 560 (788)
..|..+..+++|+.|++++|++++..+..+.++++|++|++++|++++..+..+.....
T Consensus 471 ~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~--------------------- 529 (680)
T 1ziw_A 471 SSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPI--------------------- 529 (680)
T ss_dssp CSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCC---------------------
T ss_pred cCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcc---------------------
Confidence 67888999999999999999999888888999999999999999998654332211000
Q ss_pred CcccCcccccccceEeeecCceecccCCccCCCceEECCCCcccccCcccccccccCCeEeCCCCCCCCCCCcccCCCCC
Q 003893 561 GMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRN 640 (788)
Q Consensus 561 ~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 640 (788)
... .-.++|++|++++|+++...+..|.++++|+.|+|++|+++++.+..|..+++
T Consensus 530 -----------------------~~~-~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~ 585 (680)
T 1ziw_A 530 -----------------------YFL-KGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVS 585 (680)
T ss_dssp -----------------------CTT-TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred -----------------------hhh-cCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCC
Confidence 000 01137999999999999766678999999999999999999888888999999
Q ss_pred CCeeeCCCcccCccCchhhh-cCCCCcEEecccCcCcccCC
Q 003893 641 IESLDLSYNKLSWKIPYQLV-ELNTLAVFSVAYNNLSGKIP 680 (788)
Q Consensus 641 L~~L~Ls~N~l~~~~~~~l~-~l~~L~~L~l~~N~l~~~~~ 680 (788)
|++|++++|++++..+..+. .+++|+.+++++|++.|..+
T Consensus 586 L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~ 626 (680)
T 1ziw_A 586 LKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCE 626 (680)
T ss_dssp CCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCC
T ss_pred CCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCCc
Confidence 99999999999988888887 78999999999999999866
No 5
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=1.3e-55 Score=519.77 Aligned_cols=522 Identities=22% Similarity=0.191 Sum_probs=355.8
Q ss_pred CCCCCEEeCCCCCCCCcccCCCCccCCCCCCCEEEcCCCCCCCCc-cHhhhcCCCCCEEeCCCCcCcCCCChhhhcCCCC
Q 003893 45 MPSIQYLSLSNSSVSNNSRTLDQGLCPLVHLQELHMADNDLRGSL-PWCLANMTSLRILDVSSNQLIGSISSSPLIHLTS 123 (788)
Q Consensus 45 l~~L~~L~L~~~~l~~~~~~l~~~l~~l~~L~~L~L~~n~i~~~~-~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~ 123 (788)
.++|++|+|++|.++...+ .++.++++|++|+|++|...+.+ |.+|.++++|++|+|++|.+.+..|. .|.++++
T Consensus 23 p~~l~~LdLs~N~i~~i~~---~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~-~~~~l~~ 98 (844)
T 3j0a_A 23 LNTTERLLLSFNYIRTVTA---SSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPD-AFQGLFH 98 (844)
T ss_dssp CTTCCEEEEESCCCCEECS---SSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTT-SSCSCSS
T ss_pred CCCcCEEECCCCcCCccCh---hHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHh-HccCCcc
Confidence 4689999999998876655 67889999999999999655444 78889999999999999988866565 8889999
Q ss_pred CCEEEcCCCcccCccCc-cccCCCCCccEEEccCCccchhhhccccCCCCcccccEEEccCCCcCCccCCccccCCCCCc
Q 003893 124 IEDLILSDNHFQIPISL-EPLFNHSRLKIFDAENNEINAEIIESHSLTTPNFQLQSLLLSSGYRDGITFPKFLYNQHDLE 202 (788)
Q Consensus 124 L~~L~l~~n~~~~~~~~-~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~ 202 (788)
|++|++++|.+++..+. ..+.++++|+.|++++|.+.+. ..+..+.++++|+
T Consensus 99 L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~---------------------------~~~~~~~~L~~L~ 151 (844)
T 3j0a_A 99 LFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSL---------------------------YLHPSFGKLNSLK 151 (844)
T ss_dssp CCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCC---------------------------CCCGGGGTCSSCC
T ss_pred cCEeeCcCCCCCcccccCccccccCCCCEEECCCCccccc---------------------------ccchhHhhCCCCC
Confidence 99999999988764432 2477888888888888876321 1234567888888
Q ss_pred EEEecCCCCCccCchHHhhcC--CCCCEEEccCCcccCcCccCccCCCC------cCEEEccCCcCcccCChhhhhcC--
Q 003893 203 YVRLSHIKMNEEFPNWLLENN--TKLRQLSLVNDSLVGPFRLPIHSHKQ------LRLLDVSKNNFQGHIPLEIGDIL-- 272 (788)
Q Consensus 203 ~L~l~~~~~~~~~~~~~~~~l--~~L~~L~l~~~~~~~~~~~~~~~~~~------L~~L~l~~n~l~~~~~~~~~~~~-- 272 (788)
+|++++|.+++..+..+ ..+ ++|+.|++++|.+.+..+..+..+++ |+.|++++|.+.+..+..+...+
T Consensus 152 ~L~Ls~N~i~~~~~~~l-~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~ 230 (844)
T 3j0a_A 152 SIDFSSNQIFLVCEHEL-EPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISK 230 (844)
T ss_dssp EEEEESSCCCCCCSGGG-HHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCS
T ss_pred EEECCCCcCCeeCHHHc-ccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCc
Confidence 99998888877666654 444 78888888888887766665555544 78888888877766666655432
Q ss_pred CCCcEEEeeCCcCCCCCCccccCCCCCCEEEccCCcCCCccchHHhhCC--CCCcEEEccccccCccccccccCCCccCc
Q 003893 273 SRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGC--VSLRSLALSNNNLEGHMFSRNFNLTNLIW 350 (788)
Q Consensus 273 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~l--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~ 350 (788)
.+++.+.++.+..... +..+.+. ......+.++ ++|++|++++|.+.+..+..+..+++|+.
T Consensus 231 ~~l~~L~l~~~~~~~~---------------~~~~~l~-~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 294 (844)
T 3j0a_A 231 SQAFSLILAHHIMGAG---------------FGFHNIK-DPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKV 294 (844)
T ss_dssp CCBSEEECCSSCCBCS---------------SSCSSST-TGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCE
T ss_pred ccccceeccccccccc---------------ccccccC-CCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCE
Confidence 3566666654332210 1122232 2222222222 57888888888777777777777788888
Q ss_pred eeccCccCcccCCccCCCCCCCcEEEcccCcCCCCCCccccCCCCccEEEccCCeeccCchhhhhcccCCcEEeccCCcC
Q 003893 351 LQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNI 430 (788)
Q Consensus 351 L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~ 430 (788)
|++++|.+.+..+..|..+++|++|++++|.+.+..+..+..+++|+.|++++|.+....+..|..+++|+.|++++|.+
T Consensus 295 L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l 374 (844)
T 3j0a_A 295 LNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNAL 374 (844)
T ss_dssp EEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCS
T ss_pred EECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCC
Confidence 88888888777777777888888888888888777777777788888888888877766666777778888888888776
Q ss_pred CCCCCCCCCCCcccEEEccCcccccccCcccccccccccEEeCCCCccCCCCCccccCCcCCcEEEccCccCcccC-ccc
Q 003893 431 SGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEV-PIQ 509 (788)
Q Consensus 431 ~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~ 509 (788)
++. ..+++|+.|++++|+++ .+|.. ..+++.|++++|++.+.. +..
T Consensus 375 ~~i-----------------------------~~~~~L~~L~l~~N~l~-~l~~~---~~~l~~L~ls~N~l~~l~~~~~ 421 (844)
T 3j0a_A 375 TTI-----------------------------HFIPSIPDIFLSGNKLV-TLPKI---NLTANLIHLSENRLENLDILYF 421 (844)
T ss_dssp CCC-----------------------------SSCCSCSEEEEESCCCC-CCCCC---CTTCCEEECCSCCCCSSTTHHH
T ss_pred Ccc-----------------------------cCCCCcchhccCCCCcc-ccccc---ccccceeecccCccccCchhhh
Confidence 521 11344555555555554 22221 234555555555555321 112
Q ss_pred ccCCCCCCEEEccCCcCCccCccc-ccccchhhhccCCCCCCCcccceeecCCcccCcccccccceEeeecCceecccCC
Q 003893 510 LCRLNQLQLLDLSNNNLHGHIPSC-FDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGR 588 (788)
Q Consensus 510 ~~~l~~L~~L~L~~n~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~ 588 (788)
+..+++|++|++++|++++..+.. +..
T Consensus 422 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~~---------------------------------------------------- 449 (844)
T 3j0a_A 422 LLRVPHLQILILNQNRFSSCSGDQTPSE---------------------------------------------------- 449 (844)
T ss_dssp HTTCTTCCEEEEESCCCCCCCSSSSSCS----------------------------------------------------
T ss_pred hhcCCccceeeCCCCccccccccccccc----------------------------------------------------
Confidence 345566666666666655432211 100
Q ss_pred ccCCCceEECCCCccc-----ccCcccccccccCCeEeCCCCCCCCCCCcccCCCCCCCeeeCCCcccCccCchhhhcCC
Q 003893 589 VPSLLSGLDLSCNRLI-----GHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELN 663 (788)
Q Consensus 589 ~~~~L~~L~Ls~n~l~-----~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~ 663 (788)
.++|+.|++++|.++ +..+..|.++++|+.|+|++|++++..|..|.++++|++|+|++|++++..+..+. +
T Consensus 450 -~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~ 526 (844)
T 3j0a_A 450 -NPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--A 526 (844)
T ss_dssp -CTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--S
T ss_pred -CCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--c
Confidence 125666666666654 33445677777888888888888877777777888888888888888766655554 6
Q ss_pred CCcEEecccCcCcccCCCCccccCCCCcCCcCCCCCCCCCCC
Q 003893 664 TLAVFSVAYNNLSGKIPERAAQFATFNESSYEGNPFLCGPPL 705 (788)
Q Consensus 664 ~L~~L~l~~N~l~~~~~~~~~~~~~l~~~~~~~Np~~C~~~~ 705 (788)
+|+.|++++|++++.+|..+ ..+..+++.+|||.|+|+.
T Consensus 527 ~L~~L~Ls~N~l~~~~~~~~---~~L~~l~l~~Np~~C~c~~ 565 (844)
T 3j0a_A 527 NLEILDISRNQLLAPNPDVF---VSLSVLDITHNKFICECEL 565 (844)
T ss_dssp CCCEEEEEEECCCCCCSCCC---SSCCEEEEEEECCCCSSSC
T ss_pred cccEEECCCCcCCCCChhHh---CCcCEEEecCCCccccccc
Confidence 78888888888887777654 3566777888888887764
No 6
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=5.2e-54 Score=490.66 Aligned_cols=541 Identities=19% Similarity=0.202 Sum_probs=342.8
Q ss_pred EEEcCCcccccCccchhHhhhcCCCCCEEeCCCCCCCCcccCCCCccCCCCCCCEEEcCCCCCCCCccHhhhcCCCCCEE
Q 003893 23 ELYMDDARIALNTSFLQIIGESMPSIQYLSLSNSSVSNNSRTLDQGLCPLVHLQELHMADNDLRGSLPWCLANMTSLRIL 102 (788)
Q Consensus 23 ~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~l~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L 102 (788)
.++.++ ..+ ..+|..++. ++++|++++|.+++..+ .++.++++|++|+|++|++.+..|.+|+++++|++|
T Consensus 16 ~~~c~~--~~l-~~iP~~l~~---~l~~L~Ls~n~i~~~~~---~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 86 (606)
T 3t6q_A 16 TYNCEN--LGL-NEIPGTLPN---STECLEFSFNVLPTIQN---TTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTL 86 (606)
T ss_dssp EEECTT--SCC-SSCCTTSCT---TCCEEECTTCCCSEECT---TTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEE
T ss_pred eEECCC--CCc-ccCcCCCCC---cCcEEEccCCccCcCCh---hHhccCccceEEECCCCccceeChhhccCccccCee
Confidence 455555 322 234444444 67888888887765544 567788888888888888777777778888888888
Q ss_pred eCCCCcCcCCCChhhhcCCCCCCEEEcCCCcccCccCccccCCCCCccEEEccCCccchhhhccccCCCCcccccEEEcc
Q 003893 103 DVSSNQLIGSISSSPLIHLTSIEDLILSDNHFQIPISLEPLFNHSRLKIFDAENNEINAEIIESHSLTTPNFQLQSLLLS 182 (788)
Q Consensus 103 ~Ls~n~l~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~ 182 (788)
++++|.+.+..|. .++++++|++|++++|.+++..+ ..+.++++|++|++++|.+.+..
T Consensus 87 ~Ls~n~l~~~~~~-~~~~l~~L~~L~L~~n~i~~l~~-~~~~~l~~L~~L~L~~n~l~~~~------------------- 145 (606)
T 3t6q_A 87 VLTANPLIFMAET-ALSGPKALKHLFFIQTGISSIDF-IPLHNQKTLESLYLGSNHISSIK------------------- 145 (606)
T ss_dssp ECTTCCCSEECTT-TTSSCTTCCEEECTTSCCSCGGG-SCCTTCTTCCEEECCSSCCCCCC-------------------
T ss_pred eCCCCcccccChh-hhcccccccEeeccccCcccCCc-chhccCCcccEEECCCCcccccC-------------------
Confidence 8888877755454 67778888888888887764222 35667777777777776653210
Q ss_pred CCCcCCccCCccccCCCCCcEEEecCCCCCccCchHHhhcCCCCC--EEEccCCcccCcCccCccCCCCcCEEEccCCcC
Q 003893 183 SGYRDGITFPKFLYNQHDLEYVRLSHIKMNEEFPNWLLENNTKLR--QLSLVNDSLVGPFRLPIHSHKQLRLLDVSKNNF 260 (788)
Q Consensus 183 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~--~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l 260 (788)
.|.. ..+++|++|++++|.+++..+.. ++.+++|+ +|++++|.+.+..+..+.. ..|+.|++++|..
T Consensus 146 --------~~~~-~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~l~L~l~~n~l~~~~~~~~~~-~~L~~L~l~~~~~ 214 (606)
T 3t6q_A 146 --------LPKG-FPTEKLKVLDFQNNAIHYLSKED-MSSLQQATNLSLNLNGNDIAGIEPGAFDS-AVFQSLNFGGTQN 214 (606)
T ss_dssp --------CCTT-CCCTTCCEEECCSSCCCEECHHH-HHTTTTCCSEEEECTTCCCCEECTTTTTT-CEEEEEECTTCSC
T ss_pred --------cccc-cCCcccCEEEcccCcccccChhh-hhhhcccceeEEecCCCccCccChhHhhh-ccccccccCCchh
Confidence 1111 22556666666666665444433 35566666 5566666555544444322 3555555555531
Q ss_pred cccCChhhhhcCCCCcEEEeeCCcCCCCCCccccCCCCCCEEEccCCcCCCccchHHhhCCC--CCcEEEccccccCccc
Q 003893 261 QGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCV--SLRSLALSNNNLEGHM 338 (788)
Q Consensus 261 ~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~l~--~L~~L~l~~n~i~~~~ 338 (788)
++..+. .+.+++...+....... + ... .++...+.++. +|++|++++|.+++..
T Consensus 215 ---~~~~~~-~l~~~~l~~l~~~~~~~-----------~--------~~~-~i~~~~~~~l~~~~L~~L~l~~n~l~~~~ 270 (606)
T 3t6q_A 215 ---LLVIFK-GLKNSTIQSLWLGTFED-----------M--------DDE-DISPAVFEGLCEMSVESINLQKHYFFNIS 270 (606)
T ss_dssp ---HHHHHH-HTTTCEEEEEECCCCTT-----------S--------CCC-CCCGGGGGGGGGSEEEEEECTTCCCSSCC
T ss_pred ---HHHHhh-hccccchhheechhhcc-----------c--------ccc-ccChhHhchhhcCceeEEEeecCccCccC
Confidence 111111 12333322222111110 0 000 11222222222 4566666666666555
Q ss_pred cccccCCCccCceeccCccCcccCCccCCCCCCCcEEEcccCcCCCCCCccccCCCCccEEEccCCeeccCchh-hhhcc
Q 003893 339 FSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPL-EFCQL 417 (788)
Q Consensus 339 ~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~-~~~~l 417 (788)
+..|.++++|++|++++|.+. .+|..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+.+..+. .+..+
T Consensus 271 ~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l 349 (606)
T 3t6q_A 271 SNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENL 349 (606)
T ss_dssp TTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTC
T ss_pred HHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhcc
Confidence 555555666666666666655 4455555666666666666666555555555566666666666655533322 35555
Q ss_pred cCCcEEeccCCcCCCCCCCCCCCCcccEEEccCcccccccCcccccccccccEEeCCCCccCCCCCccccCCcCCcEEEc
Q 003893 418 RILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLIL 497 (788)
Q Consensus 418 ~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L 497 (788)
++|++|++++|.+.+.. ..+ ..+..+++|++|++++|++.+..+..+..+++|++|++
T Consensus 350 ~~L~~L~l~~n~l~~~~---------------------~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 407 (606)
T 3t6q_A 350 ENLRELDLSHDDIETSD---------------------CCN-LQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDL 407 (606)
T ss_dssp TTCCEEECCSSCCCEEE---------------------EST-TTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEEC
T ss_pred CcCCEEECCCCcccccc---------------------Ccc-hhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEEC
Confidence 66666666665554221 002 25666777777777777777666777777777777777
Q ss_pred cCccCcccCcc-cccCCCCCCEEEccCCcCCccCcccccccchhhhccCCCCCCCcccceeecCCcccCcccccccceEe
Q 003893 498 AHNNLEGEVPI-QLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDF 576 (788)
Q Consensus 498 ~~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 576 (788)
++|++.+..+. .+..+++|++|++++|.+.+..|..+..++
T Consensus 408 ~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-------------------------------------- 449 (606)
T 3t6q_A 408 AFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLP-------------------------------------- 449 (606)
T ss_dssp TTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCT--------------------------------------
T ss_pred CCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCC--------------------------------------
Confidence 77777655443 367777778888877777766666655544
Q ss_pred eecCceecccCCccCCCceEECCCCccccc---CcccccccccCCeEeCCCCCCCCCCCcccCCCCCCCeeeCCCcccCc
Q 003893 577 TTKSITYTYQGRVPSLLSGLDLSCNRLIGH---IPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSW 653 (788)
Q Consensus 577 ~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~---~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 653 (788)
+|++|++++|.+++. .+..+..+++|+.|++++|++++..|..|..+++|++|++++|++++
T Consensus 450 ---------------~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 514 (606)
T 3t6q_A 450 ---------------ALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTS 514 (606)
T ss_dssp ---------------TCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCG
T ss_pred ---------------CCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCc
Confidence 677788888877652 23567888888888888888888888888888889999999998888
Q ss_pred cCchhhhcCCCCcEEecccCcCcccCCCCccccCCCCcCCcCCCCCCCCCCC
Q 003893 654 KIPYQLVELNTLAVFSVAYNNLSGKIPERAAQFATFNESSYEGNPFLCGPPL 705 (788)
Q Consensus 654 ~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~~~~~~Np~~C~~~~ 705 (788)
..|..+..+++| .|++++|++++.+|..+..+++++.+++.+|||.|+|+.
T Consensus 515 ~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~ 565 (606)
T 3t6q_A 515 SSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCSN 565 (606)
T ss_dssp GGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGGG
T ss_pred CChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCCc
Confidence 888888888888 889999988888888788888888888999999998874
No 7
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=8.4e-52 Score=472.42 Aligned_cols=519 Identities=22% Similarity=0.227 Sum_probs=355.8
Q ss_pred CCccEEEcCCcccccCccchhHhhhcCCCCCEEeCCCCCCCCcccCCCCccCCCCCCCEEEcCCCCCCCCccHhhhcCCC
Q 003893 19 KSLKELYMDDARIALNTSFLQIIGESMPSIQYLSLSNSSVSNNSRTLDQGLCPLVHLQELHMADNDLRGSLPWCLANMTS 98 (788)
Q Consensus 19 ~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~l~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~ 98 (788)
+++++|++++ +.+.+..+..+.. +++|++|++++|.+....+ .+|.++++|++|+|++|++.+..|..|+++++
T Consensus 33 ~~l~~L~Ls~--n~i~~~~~~~~~~-l~~L~~L~Ls~n~i~~~~~---~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 106 (606)
T 3t6q_A 33 NSTECLEFSF--NVLPTIQNTTFSR-LINLTFLDLTRCQIYWIHE---DTFQSQHRLDTLVLTANPLIFMAETALSGPKA 106 (606)
T ss_dssp TTCCEEECTT--CCCSEECTTTSTT-CTTCSEEECTTCCCCEECT---TTTTTCTTCCEEECTTCCCSEECTTTTSSCTT
T ss_pred CcCcEEEccC--CccCcCChhHhcc-CccceEEECCCCccceeCh---hhccCccccCeeeCCCCcccccChhhhccccc
Confidence 3799999999 7777777788888 9999999999999877655 78999999999999999999888999999999
Q ss_pred CCEEeCCCCcCcCCCChhhhcCCCCCCEEEcCCCcccCccCccccCCCCCccEEEccCCccchhhhccccCCCCcccccE
Q 003893 99 LRILDVSSNQLIGSISSSPLIHLTSIEDLILSDNHFQIPISLEPLFNHSRLKIFDAENNEINAEIIESHSLTTPNFQLQS 178 (788)
Q Consensus 99 L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~ 178 (788)
|++|++++|.+.+..+. .+.++++|++|++++|.+++ ++...+..+++|+.|++++|.+.+.
T Consensus 107 L~~L~L~~n~i~~l~~~-~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~---------------- 168 (606)
T 3t6q_A 107 LKHLFFIQTGISSIDFI-PLHNQKTLESLYLGSNHISS-IKLPKGFPTEKLKVLDFQNNAIHYL---------------- 168 (606)
T ss_dssp CCEEECTTSCCSCGGGS-CCTTCTTCCEEECCSSCCCC-CCCCTTCCCTTCCEEECCSSCCCEE----------------
T ss_pred ccEeeccccCcccCCcc-hhccCCcccEEECCCCcccc-cCcccccCCcccCEEEcccCccccc----------------
Confidence 99999999999853334 78999999999999999975 2323555699999999999987532
Q ss_pred EEccCCCcCCccCCccccCCCCCc--EEEecCCCCCccCchHHhhcCCCCCEEEccCCcccCcCccCccCCCCcCEEEcc
Q 003893 179 LLLSSGYRDGITFPKFLYNQHDLE--YVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDSLVGPFRLPIHSHKQLRLLDVS 256 (788)
Q Consensus 179 L~l~~~~~~~~~~~~~l~~~~~L~--~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 256 (788)
.+..+..+++|+ .|++++|.+++..+..+ ...+|++|++++|... +..+..+..++...+.
T Consensus 169 ------------~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~--~~~~L~~L~l~~~~~~---~~~~~~l~~~~l~~l~ 231 (606)
T 3t6q_A 169 ------------SKEDMSSLQQATNLSLNLNGNDIAGIEPGAF--DSAVFQSLNFGGTQNL---LVIFKGLKNSTIQSLW 231 (606)
T ss_dssp ------------CHHHHHTTTTCCSEEEECTTCCCCEECTTTT--TTCEEEEEECTTCSCH---HHHHHHTTTCEEEEEE
T ss_pred ------------ChhhhhhhcccceeEEecCCCccCccChhHh--hhccccccccCCchhH---HHHhhhccccchhhee
Confidence 234466777888 89999999988776654 5578999999988622 2223333333333222
Q ss_pred CCcCc----ccCChhhhhcCC--CCcEEEeeCCcCCCCCCccccCCCCCCEEEccCCcCCCccchHHhhCCCCCcEEEcc
Q 003893 257 KNNFQ----GHIPLEIGDILS--RLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALS 330 (788)
Q Consensus 257 ~n~l~----~~~~~~~~~~~~--~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~l~ 330 (788)
...+. ..++...+..+. +|++|++++|.+.+..+..|+.+++|++|++++|.++ .+|..+. .+++|++|+++
T Consensus 232 ~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~-~l~~L~~L~l~ 309 (606)
T 3t6q_A 232 LGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLV-GLSTLKKLVLS 309 (606)
T ss_dssp CCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCC-SCTTCCEEECT
T ss_pred chhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccC-CCChhhc-ccccCCEEECc
Confidence 22111 022222222222 6777777777777666666777777777777777776 6666543 46667777777
Q ss_pred ccccCccccccccCCCccCceeccCccCcccCC-ccCCCCCCCcEEEcccCcCCCCCCccccCCCCccEEEccCCeeccC
Q 003893 331 NNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIP-QSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGP 409 (788)
Q Consensus 331 ~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~ 409 (788)
+|.+.+..+..+..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+.+.. .
T Consensus 310 ~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~----------------------~ 367 (606)
T 3t6q_A 310 ANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSD----------------------C 367 (606)
T ss_dssp TCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEE----------------------E
T ss_pred cCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCcccccc----------------------C
Confidence 776666555556666666666666665553333 23555555555555555554332 0
Q ss_pred chhhhhcccCCcEEeccCCcCCCCCCCCCCCCcccEEEccCcccccccCcccccccccccEEeCCCCccCCCCCc-cccC
Q 003893 410 IPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPD-RVDG 488 (788)
Q Consensus 410 ~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~-~~~~ 488 (788)
.+..+..+++|++|++++|.+.+.. ...+..+++|++|++++|++.+..+. .+..
T Consensus 368 ~~~~~~~l~~L~~L~l~~n~l~~~~------------------------~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~ 423 (606)
T 3t6q_A 368 CNLQLRNLSHLQSLNLSYNEPLSLK------------------------TEAFKECPQLELLDLAFTRLKVKDAQSPFQN 423 (606)
T ss_dssp STTTTTTCTTCCEEECCSCSCEEEC------------------------TTTTTTCTTCSEEECTTCCEECCTTCCTTTT
T ss_pred cchhcccCCCCCEEECCCCcCCcCC------------------------HHHhcCCccCCeEECCCCcCCCcccchhhhC
Confidence 0334445555555555555443211 11344455555555555555443332 2555
Q ss_pred CcCCcEEEccCccCcccCcccccCCCCCCEEEccCCcCCccC---cccccccchhhhccCCCCCCCcccceeecCCcccC
Q 003893 489 LSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHI---PSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVD 565 (788)
Q Consensus 489 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 565 (788)
+++|++|++++|.+.+..+..+..+++|++|++++|++.+.. +..+..++
T Consensus 424 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~--------------------------- 476 (606)
T 3t6q_A 424 LHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLG--------------------------- 476 (606)
T ss_dssp CTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCT---------------------------
T ss_pred cccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCC---------------------------
Confidence 566666666666665555555666666666666666665421 12222222
Q ss_pred cccccccceEeeecCceecccCCccCCCceEECCCCcccccCcccccccccCCeEeCCCCCCCCCCCcccCCCCCCCeee
Q 003893 566 PKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLD 645 (788)
Q Consensus 566 ~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 645 (788)
+|++|++++|.+++..|..|..+++|+.|+|++|++++..|..|.++++| +|+
T Consensus 477 --------------------------~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~ 529 (606)
T 3t6q_A 477 --------------------------RLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLN 529 (606)
T ss_dssp --------------------------TCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEE
T ss_pred --------------------------CccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEE
Confidence 67777888888877777888888888888888888888888888888888 888
Q ss_pred CCCcccCccCchhhhcCCCCcEEecccCcCcccCC
Q 003893 646 LSYNKLSWKIPYQLVELNTLAVFSVAYNNLSGKIP 680 (788)
Q Consensus 646 Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~ 680 (788)
+++|++++..|..+..+++|+.|++++|+++|..+
T Consensus 530 L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 564 (606)
T 3t6q_A 530 LASNHISIILPSLLPILSQQRTINLRQNPLDCTCS 564 (606)
T ss_dssp CCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGG
T ss_pred CcCCcccccCHhhcccCCCCCEEeCCCCCccccCC
Confidence 88888888888888888888889999988887655
No 8
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=5.5e-52 Score=473.92 Aligned_cols=514 Identities=18% Similarity=0.199 Sum_probs=336.4
Q ss_pred CCCCEEEcCCCCCCCCccHhhhcCCCCCEEeCCCCcCcCCCChhhhcCCCCCCEEEcCCCcccCccCccccCCCCCccEE
Q 003893 73 VHLQELHMADNDLRGSLPWCLANMTSLRILDVSSNQLIGSISSSPLIHLTSIEDLILSDNHFQIPISLEPLFNHSRLKIF 152 (788)
Q Consensus 73 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L 152 (788)
++|++|++++|++++..+..|+++++|++|++++|.+.+..+. .|.++++|++|++++|.+++..+ ..++++++|++|
T Consensus 32 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~-~~~~l~~L~~L~Ls~n~l~~~~p-~~~~~l~~L~~L 109 (606)
T 3vq2_A 32 SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDK-AWHGLHHLSNLILTGNPIQSFSP-GSFSGLTSLENL 109 (606)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTT-TTTTCTTCCEEECTTCCCCCCCT-TSSTTCTTCCEE
T ss_pred CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHH-HhhchhhcCEeECCCCcccccCh-hhcCCcccCCEE
Confidence 4555555555555555555555555555555555555533232 45555555555555555543222 345555555555
Q ss_pred EccCCccchhhhccccCCCCcccccEEEccCCCcCCccCCccccCCCCCcEEEecCCCCCc-cCchHHhhcCCCCCEEEc
Q 003893 153 DAENNEINAEIIESHSLTTPNFQLQSLLLSSGYRDGITFPKFLYNQHDLEYVRLSHIKMNE-EFPNWLLENNTKLRQLSL 231 (788)
Q Consensus 153 ~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~-~~~~~~~~~l~~L~~L~l 231 (788)
++++|.+.+. .+..+..+++|++|++++|.+.+ .+|..+ +++++|++|++
T Consensus 110 ~L~~n~l~~~----------------------------~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~-~~l~~L~~L~L 160 (606)
T 3vq2_A 110 VAVETKLASL----------------------------ESFPIGQLITLKKLNVAHNFIHSCKLPAYF-SNLTNLVHVDL 160 (606)
T ss_dssp ECTTSCCCCS----------------------------SSSCCTTCTTCCEEECCSSCCCCCCCCGGG-GTCTTCCEEEC
T ss_pred EccCCccccc----------------------------cccccCCCCCCCEEeCCCCcccceechHhH-hhcCCCCEEEc
Confidence 5555544211 11224455666666666666654 345553 68888888888
Q ss_pred cCCcccCcCccCccCCCCcC----EEEccCCcCcccCChhhhhcCCCCcEEEeeCCcCC-CCCCccccCCCCCCEEEccC
Q 003893 232 VNDSLVGPFRLPIHSHKQLR----LLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALD-GSIPSSFGNMNFLQFLDLSN 306 (788)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~L~----~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~ 306 (788)
++|.+++..+..+..+++|+ +|++++|.++ .++...+.. .+|++|++++|.+. +..+..+..++.|+.+++..
T Consensus 161 s~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~-~~~~~~~~~-~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~ 238 (606)
T 3vq2_A 161 SYNYIQTITVNDLQFLRENPQVNLSLDMSLNPID-FIQDQAFQG-IKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLIL 238 (606)
T ss_dssp CSSCCCEECTTTTHHHHHCTTCCCEEECTTCCCC-EECTTTTTT-CEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEE
T ss_pred cCCcceecChhhhhhhhccccccceeeccCCCcc-eeCcccccC-ceeeeeeccCCccchhHHHHHhccccccccccccc
Confidence 88888777666665554443 7888888876 455555543 37788888887765 34556677777777777654
Q ss_pred CcCCC-----ccchHHhhCCC--CCcEEEc-cccccCccccccccCCCccCceeccCccCcccCCccCCCCCCCcEEEcc
Q 003893 307 NQLTG-----EIPEHLAMGCV--SLRSLAL-SNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLS 378 (788)
Q Consensus 307 n~i~~-----~~~~~~~~~l~--~L~~L~l-~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~ 378 (788)
+.+.+ .++...+.++. .++.+++ ..+.+.+..+. +..+++|+.|++++|.+. .++ .+..+++|++|+++
T Consensus 239 ~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~-~l~-~l~~~~~L~~L~l~ 315 (606)
T 3vq2_A 239 GEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVK-FHCLANVSAMSLAGVSIK-YLE-DVPKHFKWQSLSII 315 (606)
T ss_dssp ECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGS-CGGGTTCSEEEEESCCCC-CCC-CCCTTCCCSEEEEE
T ss_pred cccccCCcccccChHHhhhhhhccHhheeccccccccccccc-cccCCCCCEEEecCccch-hhh-hccccccCCEEEcc
Confidence 43321 12222222221 2334444 34444444433 555555666666655554 233 45555555555555
Q ss_pred cCcCCCCCCccccCCCCccEEEccCCeeccCchhhhhcccCCcEEeccCCcCCCCCCCCCCCCcccEEEccCcccccc--
Q 003893 379 NNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQ-- 456 (788)
Q Consensus 379 ~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~-- 456 (788)
+|.+ +.+| .+ .+++|++|++++|...+.. .+..+++|++|++++|.+ .+.
T Consensus 316 ~n~l-~~lp-~~-~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l-----------------------~~~~~ 367 (606)
T 3vq2_A 316 RCQL-KQFP-TL-DLPFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNAL-----------------------SFSGC 367 (606)
T ss_dssp SCCC-SSCC-CC-CCSSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCE-----------------------EEEEE
T ss_pred cccC-cccc-cC-CCCccceeeccCCcCccch--hhccCCCCCEEECcCCcc-----------------------CCCcc
Confidence 5555 2444 22 5555555555555332211 334455555555555544 332
Q ss_pred cCcccccccccccEEeCCCCccCCCCCccccCCcCCcEEEccCccCcccCc-ccccCCCCCCEEEccCCcCCccCccccc
Q 003893 457 LKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVP-IQLCRLNQLQLLDLSNNNLHGHIPSCFD 535 (788)
Q Consensus 457 ~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 535 (788)
++. .+..+++|++|++++|.+++ .|..+..+++|+.|++++|++.+..+ ..+..+++|++|++++|.+.+..|..+.
T Consensus 368 ~~~-~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 445 (606)
T 3vq2_A 368 CSY-SDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFL 445 (606)
T ss_dssp CCH-HHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTT
T ss_pred hhh-hhccCCcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhc
Confidence 133 67788889999999998874 55778888999999999998887766 5788889999999999998887777766
Q ss_pred ccchhhhccCCCCCCCcccceeecCCcccCcccccccceEeeecCceecccCCccCCCceEECCCCcccc-cCccccccc
Q 003893 536 NTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIG-HIPPQIGNL 614 (788)
Q Consensus 536 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~-~~~~~~~~l 614 (788)
.++ +|++|++++|.+++ ..|..+..+
T Consensus 446 ~l~-----------------------------------------------------~L~~L~l~~n~l~~~~~~~~~~~l 472 (606)
T 3vq2_A 446 GLT-----------------------------------------------------SLNTLKMAGNSFKDNTLSNVFANT 472 (606)
T ss_dssp TCT-----------------------------------------------------TCCEEECTTCEEGGGEECSCCTTC
T ss_pred CCC-----------------------------------------------------CCCEEECCCCcCCCcchHHhhccC
Confidence 655 78999999999887 468888999
Q ss_pred ccCCeEeCCCCCCCCCCCcccCCCCCCCeeeCCCcccCccCchhhhcCCCCcEEecccCcCcccCCCCccccC-CCCcCC
Q 003893 615 TKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSGKIPERAAQFA-TFNESS 693 (788)
Q Consensus 615 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~-~l~~~~ 693 (788)
++|+.|+|++|++++..|..|..+++|++|++++|++++..|..+..+++|+.|++++|+++. +|..+..++ +++.++
T Consensus 473 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~-~p~~~~~l~~~L~~l~ 551 (606)
T 3vq2_A 473 TNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIET-SKGILQHFPKSLAFFN 551 (606)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCCC-EESCGGGSCTTCCEEE
T ss_pred CCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCcc-cCHhHhhhcccCcEEE
Confidence 999999999999998888889999999999999999998888999999999999999999984 555577776 589999
Q ss_pred cCCCCCCCCCCCC
Q 003893 694 YEGNPFLCGPPLP 706 (788)
Q Consensus 694 ~~~Np~~C~~~~~ 706 (788)
+.+|||.|+|+..
T Consensus 552 l~~N~~~c~c~~~ 564 (606)
T 3vq2_A 552 LTNNSVACICEHQ 564 (606)
T ss_dssp CCSCCCCCSSTTH
T ss_pred ccCCCcccCCccH
Confidence 9999999999864
No 9
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=1.6e-51 Score=485.14 Aligned_cols=521 Identities=18% Similarity=0.134 Sum_probs=371.6
Q ss_pred CCCccEEEcCCcccccCccchhHhhhcCCCCCEEeCCCCCCCCcccCCCCccCCCCCCCEEEcCCCCCCCCccHhhhcCC
Q 003893 18 FKSLKELYMDDARIALNTSFLQIIGESMPSIQYLSLSNSSVSNNSRTLDQGLCPLVHLQELHMADNDLRGSLPWCLANMT 97 (788)
Q Consensus 18 l~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~l~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~ 97 (788)
.++|++|+|++ +.+.+..+..+.. +++|++|++++|.....++ |.++.++++|++|+|++|.+.+..|..|++++
T Consensus 23 p~~l~~LdLs~--N~i~~i~~~~~~~-l~~L~~LdLs~n~~~~~i~--~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~ 97 (844)
T 3j0a_A 23 LNTTERLLLSF--NYIRTVTASSFPF-LEQLQLLELGSQYTPLTID--KEAFRNLPNLRILDLGSSKIYFLHPDAFQGLF 97 (844)
T ss_dssp CTTCCEEEEES--CCCCEECSSSCSS-CCSCSEEEECTTCCCCEEC--TTTTSSCTTCCEEECTTCCCCEECTTSSCSCS
T ss_pred CCCcCEEECCC--CcCCccChhHCcc-cccCeEEeCCCCCCccccC--HHHhcCCCCCCEEECCCCcCcccCHhHccCCc
Confidence 47899999999 6677777778888 9999999999996654442 26799999999999999999988899999999
Q ss_pred CCCEEeCCCCcCcCCCCh-hhhcCCCCCCEEEcCCCcccCccCccccCCCCCccEEEccCCccchhhhccccCCCCcccc
Q 003893 98 SLRILDVSSNQLIGSISS-SPLIHLTSIEDLILSDNHFQIPISLEPLFNHSRLKIFDAENNEINAEIIESHSLTTPNFQL 176 (788)
Q Consensus 98 ~L~~L~Ls~n~l~~~~~~-~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L 176 (788)
+|++|+|++|.+.+.++. ..+.++++|++|++++|.+++..+...++++++|+.|++++|.+.+.
T Consensus 98 ~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~-------------- 163 (844)
T 3j0a_A 98 HLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLV-------------- 163 (844)
T ss_dssp SCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCC--------------
T ss_pred ccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCee--------------
Confidence 999999999999876654 23899999999999999998655545789999999999999987543
Q ss_pred cEEEccCCCcCCccCCccccCC--CCCcEEEecCCCCCccCchHHhhcCCC------CCEEEccCCcccCcCccCccC--
Q 003893 177 QSLLLSSGYRDGITFPKFLYNQ--HDLEYVRLSHIKMNEEFPNWLLENNTK------LRQLSLVNDSLVGPFRLPIHS-- 246 (788)
Q Consensus 177 ~~L~l~~~~~~~~~~~~~l~~~--~~L~~L~l~~~~~~~~~~~~~~~~l~~------L~~L~l~~~~~~~~~~~~~~~-- 246 (788)
.+..+..+ ++|+.|++++|.+.+..+..+ ..+++ |++|++++|.+.+..+..+..
T Consensus 164 --------------~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~-~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l 228 (844)
T 3j0a_A 164 --------------CEHELEPLQGKTLSFFSLAANSLYSRVSVDW-GKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAI 228 (844)
T ss_dssp --------------CSGGGHHHHHCSSCCCEECCSBSCCCCCCCC-CSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTS
T ss_pred --------------CHHHcccccCCccceEECCCCccccccccch-hhcCCccccCceeEEecCCCcCchhHHHHHHhhc
Confidence 22333333 689999999999988776543 34444 999999999887766555432
Q ss_pred -CCCcCEEEccCCcCcccCChhhhhcCCCCcEEEeeCCcCCCCCCccccCC--CCCCEEEccCCcCCCccchHHhhCCCC
Q 003893 247 -HKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNM--NFLQFLDLSNNQLTGEIPEHLAMGCVS 323 (788)
Q Consensus 247 -~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l--~~L~~L~L~~n~i~~~~~~~~~~~l~~ 323 (788)
...++.+.++.+.+... +..+.+.+.....|..+ ++|+.|++++|.+. .++...+..+++
T Consensus 229 ~~~~l~~L~l~~~~~~~~----------------~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~-~~~~~~~~~l~~ 291 (844)
T 3j0a_A 229 SKSQAFSLILAHHIMGAG----------------FGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVF-SLNSRVFETLKD 291 (844)
T ss_dssp CSCCBSEEECCSSCCBCS----------------SSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCC-EECSCCSSSCCC
T ss_pred Ccccccceeccccccccc----------------ccccccCCCChhhhhccccCCccEEECCCCccc-ccChhhhhcCCC
Confidence 35788888875433211 01112222222223322 45666666666555 333333344566
Q ss_pred CcEEEccccccCccccccccCCCccCceeccCccCcccCCccCCCCCCCcEEEcccCcCCCCCCccccCCCCccEEEccC
Q 003893 324 LRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPK 403 (788)
Q Consensus 324 L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~ 403 (788)
|++|++++|.+.+..+..|.++++|++|++++|.+.+..+..|..+++|+.|++++|.+....+..+..+++|+.|++++
T Consensus 292 L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~ 371 (844)
T 3j0a_A 292 LKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRD 371 (844)
T ss_dssp CCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEET
T ss_pred CCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCC
Confidence 66666666666655555566666666666666666655566666666666666666666655555666666666666666
Q ss_pred CeeccCchhhhhcccCCcEEeccCCcCCCCCCCCCCCCcccEEEccCcccccccCcccccccccccEEeCCCCccCCCCC
Q 003893 404 NHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIP 483 (788)
Q Consensus 404 n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~ 483 (788)
|.+.+. ..+++|+.|++++|++... +. ...+++.|++++|++.+...
T Consensus 372 N~l~~i-----~~~~~L~~L~l~~N~l~~l------------------------~~----~~~~l~~L~ls~N~l~~l~~ 418 (844)
T 3j0a_A 372 NALTTI-----HFIPSIPDIFLSGNKLVTL------------------------PK----INLTANLIHLSENRLENLDI 418 (844)
T ss_dssp CCSCCC-----SSCCSCSEEEEESCCCCCC------------------------CC----CCTTCCEEECCSCCCCSSTT
T ss_pred CCCCcc-----cCCCCcchhccCCCCcccc------------------------cc----cccccceeecccCccccCch
Confidence 666532 1266777777777766521 11 12346667777776664322
Q ss_pred -ccccCCcCCcEEEccCccCcccCcc-cccCCCCCCEEEccCCcCCccCc-----ccccccchhhhccCCCCCCCcccce
Q 003893 484 -DRVDGLSQLSYLILAHNNLEGEVPI-QLCRLNQLQLLDLSNNNLHGHIP-----SCFDNTTLHERYNNGSSLQPFETSF 556 (788)
Q Consensus 484 -~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~ 556 (788)
..+..+++|+.|++++|++++..+. .+..+++|+.|++++|.+++..+ ..|..+
T Consensus 419 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l------------------- 479 (844)
T 3j0a_A 419 LYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGL------------------- 479 (844)
T ss_dssp HHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCB-------------------
T ss_pred hhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCc-------------------
Confidence 2344677777777777777644332 34557788888888888764332 222222
Q ss_pred eecCCcccCcccccccceEeeecCceecccCCccCCCceEECCCCcccccCcccccccccCCeEeCCCCCCCCCCCcccC
Q 003893 557 VIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFS 636 (788)
Q Consensus 557 ~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 636 (788)
++|+.|+|++|.+++..|..|.++++|+.|+|++|++++..+..+.
T Consensus 480 ----------------------------------~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~ 525 (844)
T 3j0a_A 480 ----------------------------------SHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP 525 (844)
T ss_dssp ----------------------------------CCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC
T ss_pred ----------------------------------ccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh
Confidence 2789999999999999999999999999999999999988777776
Q ss_pred CCCCCCeeeCCCcccCccCchhhhcCCCCcEEecccCcCcccCC
Q 003893 637 NLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSGKIP 680 (788)
Q Consensus 637 ~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~ 680 (788)
++|+.|++++|++++..|..| .+|+.+++++|++.|..+
T Consensus 526 --~~L~~L~Ls~N~l~~~~~~~~---~~L~~l~l~~Np~~C~c~ 564 (844)
T 3j0a_A 526 --ANLEILDISRNQLLAPNPDVF---VSLSVLDITHNKFICECE 564 (844)
T ss_dssp --SCCCEEEEEEECCCCCCSCCC---SSCCEEEEEEECCCCSSS
T ss_pred --ccccEEECCCCcCCCCChhHh---CCcCEEEecCCCcccccc
Confidence 899999999999999888765 478999999999998755
No 10
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=3.7e-51 Score=467.14 Aligned_cols=532 Identities=20% Similarity=0.165 Sum_probs=427.2
Q ss_pred cEEEcCCcccccCccchhHhhhcCCCCCEEeCCCCCCCCcccCCCCccCCCCCCCEEEcCCCCCCCCccHhhhcCCCCCE
Q 003893 22 KELYMDDARIALNTSFLQIIGESMPSIQYLSLSNSSVSNNSRTLDQGLCPLVHLQELHMADNDLRGSLPWCLANMTSLRI 101 (788)
Q Consensus 22 ~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~l~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~ 101 (788)
++++.++ ..+ ..+|..+. +++++|++++|.+.+..+ ..+.++++|++|++++|++++..|.+|+++++|++
T Consensus 14 ~~~~c~~--~~l-~~ip~~~~---~~l~~L~Ls~n~l~~~~~---~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~ 84 (606)
T 3vq2_A 14 ITYQCMD--QKL-SKVPDDIP---SSTKNIDLSFNPLKILKS---YSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSN 84 (606)
T ss_dssp TEEECTT--SCC-SSCCTTSC---TTCCEEECTTSCCCEECT---TTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCE
T ss_pred CceEccC--CCc-ccCCCCCC---CCcCEEECCCCCcCEeCh---hhccCCccCcEEeCCCCcccccCHHHhhchhhcCE
Confidence 4677777 433 23444443 589999999999876655 57899999999999999999888889999999999
Q ss_pred EeCCCCcCcCCCChhhhcCCCCCCEEEcCCCcccCccCccccCCCCCccEEEccCCccchhhhccccCCCCcccccEEEc
Q 003893 102 LDVSSNQLIGSISSSPLIHLTSIEDLILSDNHFQIPISLEPLFNHSRLKIFDAENNEINAEIIESHSLTTPNFQLQSLLL 181 (788)
Q Consensus 102 L~Ls~n~l~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l 181 (788)
|++++|.+.+..|. .|+++++|++|++++|.+++..+ ..++++++|++|++++|.+.+
T Consensus 85 L~Ls~n~l~~~~p~-~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~-------------------- 142 (606)
T 3vq2_A 85 LILTGNPIQSFSPG-SFSGLTSLENLVAVETKLASLES-FPIGQLITLKKLNVAHNFIHS-------------------- 142 (606)
T ss_dssp EECTTCCCCCCCTT-SSTTCTTCCEEECTTSCCCCSSS-SCCTTCTTCCEEECCSSCCCC--------------------
T ss_pred eECCCCcccccChh-hcCCcccCCEEEccCCccccccc-cccCCCCCCCEEeCCCCcccc--------------------
Confidence 99999998865565 89999999999999999875433 468899999999999887632
Q ss_pred cCCCcCCccCCccccCCCCCcEEEecCCCCCccCchHHhhcCCC----CCEEEccCCcccCcCccCccCCCCcCEEEccC
Q 003893 182 SSGYRDGITFPKFLYNQHDLEYVRLSHIKMNEEFPNWLLENNTK----LRQLSLVNDSLVGPFRLPIHSHKQLRLLDVSK 257 (788)
Q Consensus 182 ~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~----L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 257 (788)
..+|..+.++++|++|++++|.+++..+..+ +.+++ +.+|++++|.+++..+..+... +|++|++++
T Consensus 143 -------~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~-~L~~L~L~~ 213 (606)
T 3vq2_A 143 -------CKLPAYFSNLTNLVHVDLSYNYIQTITVNDL-QFLRENPQVNLSLDMSLNPIDFIQDQAFQGI-KLHELTLRG 213 (606)
T ss_dssp -------CCCCGGGGTCTTCCEEECCSSCCCEECTTTT-HHHHHCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEES
T ss_pred -------eechHhHhhcCCCCEEEccCCcceecChhhh-hhhhccccccceeeccCCCcceeCcccccCc-eeeeeeccC
Confidence 1356778889999999999999877655543 44444 4589999999988777666555 899999999
Q ss_pred CcCcccCChhhhhcCCCCcEEEeeCCcCCC------CCCccccCCC--CCCEEEc-cCCcCCCccchHHhhCCCCCcEEE
Q 003893 258 NNFQGHIPLEIGDILSRLTVFNISMNALDG------SIPSSFGNMN--FLQFLDL-SNNQLTGEIPEHLAMGCVSLRSLA 328 (788)
Q Consensus 258 n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~------~~~~~~~~l~--~L~~L~L-~~n~i~~~~~~~~~~~l~~L~~L~ 328 (788)
|.+.+.........++.++.+++..+.+.. ..+..+..+. .++.+++ ..+.+.+.+|. +..+++|+.|+
T Consensus 214 n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~--~~~l~~L~~L~ 291 (606)
T 3vq2_A 214 NFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVK--FHCLANVSAMS 291 (606)
T ss_dssp CCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGS--CGGGTTCSEEE
T ss_pred CccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheeccccccccccccc--cccCCCCCEEE
Confidence 988744434444458899988886554432 1222233333 3566777 66778766776 55789999999
Q ss_pred ccccccCccccccccCCCccCceeccCccCcccCCccCCCCCCCcEEEcccCcCCCCCCccccCCCCccEEEccCCeecc
Q 003893 329 LSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEG 408 (788)
Q Consensus 329 l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~ 408 (788)
+++|.+.... .+..+++|++|++++|.+ +.+| .+ .+++|++|++++|...+.. .+..+++|++|++++|.+.+
T Consensus 292 l~~~~~~~l~--~l~~~~~L~~L~l~~n~l-~~lp-~~-~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~ 364 (606)
T 3vq2_A 292 LAGVSIKYLE--DVPKHFKWQSLSIIRCQL-KQFP-TL-DLPFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSF 364 (606)
T ss_dssp EESCCCCCCC--CCCTTCCCSEEEEESCCC-SSCC-CC-CCSSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEE
T ss_pred ecCccchhhh--hccccccCCEEEcccccC-cccc-cC-CCCccceeeccCCcCccch--hhccCCCCCEEECcCCccCC
Confidence 9999997654 778899999999999999 4677 45 9999999999999655433 57789999999999999986
Q ss_pred Cc--hhhhhcccCCcEEeccCCcCCCCCCCCCCCCcccEEEccCcccccccCcccccccccccEEeCCCCccCCCCC-cc
Q 003893 409 PI--PLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIP-DR 485 (788)
Q Consensus 409 ~~--~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~-~~ 485 (788)
.. +..+..+++|++|++++|.+.+ ++ ..+..+++|++|++++|++.+..+ ..
T Consensus 365 ~~~~~~~~~~~~~L~~L~L~~n~l~~------------------------~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~ 419 (606)
T 3vq2_A 365 SGCCSYSDLGTNSLRHLDLSFNGAII------------------------MS-ANFMGLEELQHLDFQHSTLKRVTEFSA 419 (606)
T ss_dssp EEECCHHHHCCSCCCEEECCSCSEEE------------------------EC-CCCTTCTTCCEEECTTSEEESTTTTTT
T ss_pred CcchhhhhccCCcccEeECCCCcccc------------------------ch-hhccCCCCCCeeECCCCccCCccChhh
Confidence 63 7888999999999999998762 23 267778888889999888887766 57
Q ss_pred ccCCcCCcEEEccCccCcccCcccccCCCCCCEEEccCCcCCc-cCcccccccchhhhccCCCCCCCcccceeecCCccc
Q 003893 486 VDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHG-HIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDV 564 (788)
Q Consensus 486 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 564 (788)
+..+++|++|++++|.+++..|..+..+++|++|++++|++.+ ..|..+..++
T Consensus 420 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~-------------------------- 473 (606)
T 3vq2_A 420 FLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTT-------------------------- 473 (606)
T ss_dssp TTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCT--------------------------
T ss_pred hhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCC--------------------------
Confidence 8888999999999999888888888889999999999998886 3566665554
Q ss_pred CcccccccceEeeecCceecccCCccCCCceEECCCCcccccCcccccccccCCeEeCCCCCCCCCCCcccCCCCCCCee
Q 003893 565 DPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESL 644 (788)
Q Consensus 565 ~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 644 (788)
+|++|++++|.+++..|..+..+++|++|+|++|++++..|..|..+++|++|
T Consensus 474 ---------------------------~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 526 (606)
T 3vq2_A 474 ---------------------------NLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTL 526 (606)
T ss_dssp ---------------------------TCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEE
T ss_pred ---------------------------CCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEE
Confidence 89999999999998889999999999999999999999889999999999999
Q ss_pred eCCCcccCccCchhhhcCC-CCcEEecccCcCcccCCC
Q 003893 645 DLSYNKLSWKIPYQLVELN-TLAVFSVAYNNLSGKIPE 681 (788)
Q Consensus 645 ~Ls~N~l~~~~~~~l~~l~-~L~~L~l~~N~l~~~~~~ 681 (788)
++++|+++ .+|..+..++ +|+.|++++|++.|..+.
T Consensus 527 ~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~~ 563 (606)
T 3vq2_A 527 DCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACICEH 563 (606)
T ss_dssp ECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSSTT
T ss_pred ECCCCcCc-ccCHhHhhhcccCcEEEccCCCcccCCcc
Confidence 99999999 5677788887 699999999999987664
No 11
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.5e-45 Score=417.97 Aligned_cols=493 Identities=19% Similarity=0.246 Sum_probs=243.2
Q ss_pred CCCEEEcCCCCCCCCccHhhhcCCCCCEEeCCCCcCcCCCChhhhcCCCCCCEEEcCCCcccCccCccccCCCCCccEEE
Q 003893 74 HLQELHMADNDLRGSLPWCLANMTSLRILDVSSNQLIGSISSSPLIHLTSIEDLILSDNHFQIPISLEPLFNHSRLKIFD 153 (788)
Q Consensus 74 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~ 153 (788)
++++|++++|++++..+.+|.++++|++|++++|.+.+ ++...|.++++|++|++++|.++. ++...+.++++|++|+
T Consensus 29 ~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~-i~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~ 106 (570)
T 2z63_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQT-IEDGAYQSLSHLSTLILTGNPIQS-LALGAFSGLSSLQKLV 106 (570)
T ss_dssp SCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCE-ECTTTTTTCTTCCEEECTTCCCCE-ECTTTTTTCTTCCEEE
T ss_pred cccEEEccCCccCccChhHhhCCCCceEEECCCCcCCc-cCcccccCchhCCEEeCcCCcCCc-cCHhhhcCcccccccc
Confidence 45666666666655555556666666666666665553 322255566666666666665543 2223455566666666
Q ss_pred ccCCccchhhhccccCCCCcccccEEEccCCCcCCccCCccccCCCCCcEEEecCCCCCc-cCchHHhhcCCCCCEEEcc
Q 003893 154 AENNEINAEIIESHSLTTPNFQLQSLLLSSGYRDGITFPKFLYNQHDLEYVRLSHIKMNE-EFPNWLLENNTKLRQLSLV 232 (788)
Q Consensus 154 l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~-~~~~~~~~~l~~L~~L~l~ 232 (788)
+++|.+.... +..+..+++|++|++++|.+++ .+|..+ +++++|++|+++
T Consensus 107 L~~n~l~~l~----------------------------~~~~~~l~~L~~L~L~~n~l~~~~lp~~~-~~l~~L~~L~l~ 157 (570)
T 2z63_A 107 AVETNLASLE----------------------------NFPIGHLKTLKELNVAHNLIQSFKLPEYF-SNLTNLEHLDLS 157 (570)
T ss_dssp CTTSCCCCST----------------------------TCSCTTCTTCCEEECCSSCCCCCCCCGGG-GGCTTCCEEECT
T ss_pred ccccccccCC----------------------------CccccccccccEEecCCCccceecChhhh-cccCCCCEEeCc
Confidence 6555542210 1123455566666666666554 345443 567777777777
Q ss_pred CCcccCcCccCccCCCCc----CEEEccCCcCcccCChhhhhcCCCCcEEEeeCCcCCC-CCCccccCCCCCCEEEccCC
Q 003893 233 NDSLVGPFRLPIHSHKQL----RLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDG-SIPSSFGNMNFLQFLDLSNN 307 (788)
Q Consensus 233 ~~~~~~~~~~~~~~~~~L----~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n 307 (788)
+|.+++..+..+..+++| +.+++++|.+.+..+ ..+... +|++|++++|.... ..+..+..++.++.+.+...
T Consensus 158 ~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~-~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~ 235 (570)
T 2z63_A 158 SNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQP-GAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLG 235 (570)
T ss_dssp TSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECT-TTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEE
T ss_pred CCccceecHHHccchhccchhhhhcccCCCCceecCH-HHhccC-cceeEecccccccccchhhhhcCccccceeeeccc
Confidence 777766655555555555 566666666653333 223222 56666666653221 12333444555544443322
Q ss_pred cCCC-----ccchHHhhCCCCCcEEEccccccCccccccccCCCccCceeccCc-cCcccCCccCCCCCCCcEEEcccCc
Q 003893 308 QLTG-----EIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGN-HFVGEIPQSLSKCSSLQGLFLSNNS 381 (788)
Q Consensus 308 ~i~~-----~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n-~~~~~~~~~~~~l~~L~~L~l~~n~ 381 (788)
.+.. .++...+.+++++ .++.++++++ .+.+..+..+..+++|++|++++|.
T Consensus 236 ~~~~~~~l~~~~~~~~~~l~~l----------------------~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 293 (570)
T 2z63_A 236 EFRNEGNLEKFDKSALEGLCNL----------------------TIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVT 293 (570)
T ss_dssp ECCCCSSCEECCTTTTGGGGGS----------------------EEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCE
T ss_pred cccCchhhhhcchhhhcccccc----------------------chhhhhhhcchhhhhhchhhhcCcCcccEEEecCcc
Confidence 1110 1111111111111 1233333333 3333344444444444444444444
Q ss_pred CCCCCCccccCCCCccEEEccCCeeccCchhhhhcccCCcEEeccCCcCCCCCCCCCCCCcccEEEccCcccccccC-cc
Q 003893 382 LSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLK-EG 460 (788)
Q Consensus 382 l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~-~~ 460 (788)
+. .+|..+..+ +|++|++++|.+. ..|. ..+++|+.|++++|.+.+..+. ..+++|++|++++|.+.+... ..
T Consensus 294 l~-~l~~~~~~~-~L~~L~l~~n~~~-~l~~--~~l~~L~~L~l~~n~~~~~~~~-~~~~~L~~L~l~~n~l~~~~~~~~ 367 (570)
T 2z63_A 294 IE-RVKDFSYNF-GWQHLELVNCKFG-QFPT--LKLKSLKRLTFTSNKGGNAFSE-VDLPSLEFLDLSRNGLSFKGCCSQ 367 (570)
T ss_dssp EC-SCCBCCSCC-CCSEEEEESCBCS-SCCB--CBCSSCCEEEEESCBSCCBCCC-CBCTTCCEEECCSSCCBEEEEEEH
T ss_pred ch-hhhhhhccC-CccEEeeccCccc-ccCc--ccccccCEEeCcCCcccccccc-ccCCCCCEEeCcCCccCccccccc
Confidence 44 234444444 4444444444444 2221 2344455555554444322221 223333333333333322110 11
Q ss_pred cccccccccEEeCCCCccCCCCCccccCCcCCcEEEccCccCcccCc-ccccCCCCCCEEEccCCcCCccCcccccccch
Q 003893 461 TFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVP-IQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTL 539 (788)
Q Consensus 461 ~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~ 539 (788)
.+.++++|++|++++|.+.+..+ .+..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+.+..|..+..++
T Consensus 368 ~~~~~~~L~~L~l~~n~l~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~- 445 (570)
T 2z63_A 368 SDFGTTSLKYLDLSFNGVITMSS-NFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLS- 445 (570)
T ss_dssp HHHTCSCCCEEECCSCSEEEEEE-EEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCT-
T ss_pred cccccCccCEEECCCCccccccc-cccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCC-
Confidence 34555566666666665553322 25555566666666665554433 3455555566666665555555444443333
Q ss_pred hhhccCCCCCCCcccceeecCCcccCcccccccceEeeecCceecccCCccCCCceEECCCCccc-ccCcccccccccCC
Q 003893 540 HERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLI-GHIPPQIGNLTKIQ 618 (788)
Q Consensus 540 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~ 618 (788)
+|++|++++|.++ +.+|..+..+++|+
T Consensus 446 ----------------------------------------------------~L~~L~l~~n~l~~~~~p~~~~~l~~L~ 473 (570)
T 2z63_A 446 ----------------------------------------------------SLEVLKMAGNSFQENFLPDIFTELRNLT 473 (570)
T ss_dssp ----------------------------------------------------TCCEEECTTCEEGGGEECSCCTTCTTCC
T ss_pred ----------------------------------------------------cCcEEECcCCcCccccchhhhhcccCCC
Confidence 5555555555554 34455555555566
Q ss_pred eEeCCCCCCCCCCCcccCCCCCCCeeeCCCcccCccCchhhhcCCCCcEEecccCcCcccCCC
Q 003893 619 TLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSGKIPE 681 (788)
Q Consensus 619 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~ 681 (788)
.|++++|++++..|..|..+++|++|++++|++++..|..+..+++|+.|++++|+++|.+|.
T Consensus 474 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~ 536 (570)
T 2z63_A 474 FLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 536 (570)
T ss_dssp EEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred EEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcc
Confidence 666666555555555555555566666665555555555555555555555555555555443
No 12
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=2.4e-45 Score=416.41 Aligned_cols=466 Identities=21% Similarity=0.192 Sum_probs=351.5
Q ss_pred cccEEEccCCCcCCccCCccccCCCCCcEEEecCCCCCccCchHHhhcCCCCCEEEccCCcccCcCccCccCCCCcCEEE
Q 003893 175 QLQSLLLSSGYRDGITFPKFLYNQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDSLVGPFRLPIHSHKQLRLLD 254 (788)
Q Consensus 175 ~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 254 (788)
+++.|++ .++...+..+..+..+++|++|++++|.+++..+.. ++++++|++|++++|.+++..+..+..+++|++|+
T Consensus 29 ~l~~L~L-s~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 106 (570)
T 2z63_A 29 STKNLDL-SFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGA-YQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV 106 (570)
T ss_dssp SCCEEEC-CSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTT-TTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEE
T ss_pred cccEEEc-cCCccCccChhHhhCCCCceEEECCCCcCCccCccc-ccCchhCCEEeCcCCcCCccCHhhhcCcccccccc
Confidence 6788888 666666666667788888888888888876544443 46788888888888888777777788888888888
Q ss_pred ccCCcCcccCChhhhhcCCCCcEEEeeCCcCCC-CCCccccCCCCCCEEEccCCcCCCccchHHhhCCCCC----cEEEc
Q 003893 255 VSKNNFQGHIPLEIGDILSRLTVFNISMNALDG-SIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSL----RSLAL 329 (788)
Q Consensus 255 l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L----~~L~l 329 (788)
+++|.++ .++...+..+++|++|++++|.+.+ .+|..++++++|++|++++|.++ .++...+..+++| ++|++
T Consensus 107 L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~~~~~L~l 184 (570)
T 2z63_A 107 AVETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ-SIYCTDLRVLHQMPLLNLSLDL 184 (570)
T ss_dssp CTTSCCC-CSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCC-EECGGGGHHHHTCTTCCCEEEC
T ss_pred ccccccc-cCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccc-eecHHHccchhccchhhhhccc
Confidence 8888877 4444323347788888888888775 35777888888888888888887 4443333446666 78888
Q ss_pred cccccCccccccccCCCccCceeccCccCcc-cCCccCCCCC--------------------------------CCcEEE
Q 003893 330 SNNNLEGHMFSRNFNLTNLIWLQLEGNHFVG-EIPQSLSKCS--------------------------------SLQGLF 376 (788)
Q Consensus 330 ~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~-~~~~~~~~l~--------------------------------~L~~L~ 376 (788)
++|.+.+..+..+... +|++|++++|.... ..+..+..++ .++.++
T Consensus 185 ~~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~ 263 (570)
T 2z63_A 185 SLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFR 263 (570)
T ss_dssp TTCCCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEE
T ss_pred CCCCceecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhh
Confidence 8888887776666544 78888887763221 0111111111 134445
Q ss_pred cccC-cCCCCCCccccCCCCccEEEccCCeeccCchhhhhcccCCcEEeccCCcCCCCCCCCCCCCcccEEEccCccccc
Q 003893 377 LSNN-SLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHG 455 (788)
Q Consensus 377 l~~n-~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~ 455 (788)
++++ .+.+..+..+..+++|++|++++|.+. .+|..+..+ +|+.|++++|.+. .++. ..+++|+.|++++|.+.+
T Consensus 264 l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~~~-~l~~-~~l~~L~~L~l~~n~~~~ 339 (570)
T 2z63_A 264 LAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCKFG-QFPT-LKLKSLKRLTFTSNKGGN 339 (570)
T ss_dssp EEETTEEESCSTTTTGGGTTCSEEEEESCEEC-SCCBCCSCC-CCSEEEEESCBCS-SCCB-CBCSSCCEEEEESCBSCC
T ss_pred hhcchhhhhhchhhhcCcCcccEEEecCccch-hhhhhhccC-CccEEeeccCccc-ccCc-ccccccCEEeCcCCcccc
Confidence 5554 455566677777888888888888877 456666666 8888888888776 3333 357788888888887765
Q ss_pred ccCcccccccccccEEeCCCCccCCCC--CccccCCcCCcEEEccCccCcccCcccccCCCCCCEEEccCCcCCccCc-c
Q 003893 456 QLKEGTFFNCLTLMILDLSYNHLNGNI--PDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIP-S 532 (788)
Q Consensus 456 ~~~~~~~~~~~~L~~L~l~~n~i~~~~--~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~ 532 (788)
..+. ..+++|++|++++|.+++.. +..+.++++|++|++++|.+.+..+. +..+++|++|++++|.+.+..+ .
T Consensus 340 ~~~~---~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~ 415 (570)
T 2z63_A 340 AFSE---VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFS 415 (570)
T ss_dssp BCCC---CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSC
T ss_pred cccc---ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchh
Confidence 4433 56778888888888877443 55677788888888888887754443 7788888888888888776554 2
Q ss_pred cccccchhhhccCCCCCCCcccceeecCCcccCcccccccceEeeecCceecccCCccCCCceEECCCCcccccCccccc
Q 003893 533 CFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIG 612 (788)
Q Consensus 533 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~ 612 (788)
.+..++ +|++|++++|.+.+..|..+.
T Consensus 416 ~~~~l~-----------------------------------------------------~L~~L~l~~n~l~~~~~~~~~ 442 (570)
T 2z63_A 416 VFLSLR-----------------------------------------------------NLIYLDISHTHTRVAFNGIFN 442 (570)
T ss_dssp TTTTCT-----------------------------------------------------TCCEEECTTSCCEECCTTTTT
T ss_pred hhhcCC-----------------------------------------------------CCCEEeCcCCcccccchhhhh
Confidence 333333 899999999999999999999
Q ss_pred ccccCCeEeCCCCCCC-CCCCcccCCCCCCCeeeCCCcccCccCchhhhcCCCCcEEecccCcCcccCCCCccccCCCCc
Q 003893 613 NLTKIQTLNLSHNNLA-GPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSGKIPERAAQFATFNE 691 (788)
Q Consensus 613 ~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~ 691 (788)
++++|++|++++|+++ +.+|..|..+++|++|++++|++++..|..+..+++|+.|++++|++++.+|..+..+++++.
T Consensus 443 ~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 522 (570)
T 2z63_A 443 GLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQK 522 (570)
T ss_dssp TCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCE
T ss_pred cCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcE
Confidence 9999999999999997 568899999999999999999999988999999999999999999999998888899999999
Q ss_pred CCcCCCCCCCCCCCC
Q 003893 692 SSYEGNPFLCGPPLP 706 (788)
Q Consensus 692 ~~~~~Np~~C~~~~~ 706 (788)
+++.+||+.|+|+..
T Consensus 523 L~l~~N~~~~~~~~~ 537 (570)
T 2z63_A 523 IWLHTNPWDCSCPRI 537 (570)
T ss_dssp EECCSSCBCCCTTTT
T ss_pred EEecCCcccCCCcch
Confidence 999999999999754
No 13
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=3.3e-45 Score=412.85 Aligned_cols=487 Identities=20% Similarity=0.180 Sum_probs=243.7
Q ss_pred CCCCCEEeCCCCCCCCcccCCCCccCCCCCCCEEEcCCCCCCCCccHhhhcCCCCCEEeCCCCcCcCCCChhhhcCCCCC
Q 003893 45 MPSIQYLSLSNSSVSNNSRTLDQGLCPLVHLQELHMADNDLRGSLPWCLANMTSLRILDVSSNQLIGSISSSPLIHLTSI 124 (788)
Q Consensus 45 l~~L~~L~L~~~~l~~~~~~l~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L 124 (788)
|+...+.+.+++.++. +|..+. ++|++|++++|++++..|..|+++++|++|++++|.+.+..+. .+..+++|
T Consensus 4 C~~~~~c~~~~~~l~~----ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~-~~~~l~~L 76 (549)
T 2z81_A 4 CDASGVCDGRSRSFTS----IPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGD-AFYSLGSL 76 (549)
T ss_dssp ECTTSEEECTTSCCSS----CCSCCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTT-TTTTCTTC
T ss_pred CCCCceEECCCCcccc----ccccCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChh-hccccccC
Confidence 3444556666666542 223332 5677777777777766666777777777777777776643333 56666677
Q ss_pred CEEEcCCCcccCccCccccCCCCCccEEEccCCccchhhhccccCCCCcccccEEEccCCCcCCccCCccccCCCCCcEE
Q 003893 125 EDLILSDNHFQIPISLEPLFNHSRLKIFDAENNEINAEIIESHSLTTPNFQLQSLLLSSGYRDGITFPKFLYNQHDLEYV 204 (788)
Q Consensus 125 ~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L 204 (788)
++|++++|.+++. +...++++++|++|++++|.
T Consensus 77 ~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~---------------------------------------------- 109 (549)
T 2z81_A 77 EHLDLSDNHLSSL-SSSWFGPLSSLKYLNLMGNP---------------------------------------------- 109 (549)
T ss_dssp CEEECTTSCCCSC-CHHHHTTCTTCCEEECTTCC----------------------------------------------
T ss_pred CEEECCCCccCcc-CHHHhccCCCCcEEECCCCc----------------------------------------------
Confidence 7777766665532 21223344444444443333
Q ss_pred EecCCCCCccCchHHhhcCCCCCEEEccCCcccCc-CccCccCCCCcCEEEccCCcCcccCChhhhhcCCCCcEEEeeCC
Q 003893 205 RLSHIKMNEEFPNWLLENNTKLRQLSLVNDSLVGP-FRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMN 283 (788)
Q Consensus 205 ~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n 283 (788)
+++. .+..+..+++|++|++++|.+.+.+|...+..+++|++|++++|
T Consensus 110 -------------------------------l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n 158 (549)
T 2z81_A 110 -------------------------------YQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKAL 158 (549)
T ss_dssp -------------------------------CSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEET
T ss_pred -------------------------------ccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCC
Confidence 3221 12233344444444444444222333322233555666666666
Q ss_pred cCCCCCCccccCCCCCCEEEccCCcCCCccchHHhhCCCCCcEEEccccccCccc---cccccCCCccCceeccCccCcc
Q 003893 284 ALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHM---FSRNFNLTNLIWLQLEGNHFVG 360 (788)
Q Consensus 284 ~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~l~~n~i~~~~---~~~~~~l~~L~~L~l~~n~~~~ 360 (788)
.+.+..|..+..+++|++|+++.|.+. .+|..++..+++|++|++++|.+.+.. ......+++|+.|++++|.+.+
T Consensus 159 ~l~~~~~~~l~~l~~L~~L~l~~n~~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~ 237 (549)
T 2z81_A 159 SLRNYQSQSLKSIRDIHHLTLHLSESA-FLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTD 237 (549)
T ss_dssp TCCEECTTTTTTCSEEEEEEEECSBST-THHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEH
T ss_pred cccccChhhhhccccCceEecccCccc-ccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccch
Confidence 665555556666666666666666655 555555555666666666666655432 1112234556666666665543
Q ss_pred cCC----ccCCCCCCCcEEEcccCcCCCCC------CccccCCCCccEEEccCCeeccC-----chhhhhcccCCcEEec
Q 003893 361 EIP----QSLSKCSSLQGLFLSNNSLSGKI------PRWLGNLTVLRHIIMPKNHIEGP-----IPLEFCQLRILQILDI 425 (788)
Q Consensus 361 ~~~----~~~~~l~~L~~L~l~~n~l~~~~------~~~l~~l~~L~~L~l~~n~~~~~-----~~~~~~~l~~L~~L~l 425 (788)
..+ ..+..+++|+.+++++|.+.+.. ...+..+++++.|.+.++.+... .+..+...++|+.|++
T Consensus 238 ~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l 317 (549)
T 2z81_A 238 ESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITV 317 (549)
T ss_dssp HHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEE
T ss_pred hHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEe
Confidence 221 22344555666666665543211 11233445555555555544321 1111223345555555
Q ss_pred cCCcCCCCCCCCCCCCcccEEEccCcccccccCcccccccccccEEeCCCCccCCCCC---ccccCCcCCcEEEccCccC
Q 003893 426 SDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIP---DRVDGLSQLSYLILAHNNL 502 (788)
Q Consensus 426 ~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~---~~~~~l~~L~~L~L~~n~l 502 (788)
++|.+. .+|...+.++++|++|++++|++++..| ..+..+++|++|++++|++
T Consensus 318 ~~n~l~------------------------~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l 373 (549)
T 2z81_A 318 ENSKVF------------------------LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHL 373 (549)
T ss_dssp ESSCCC------------------------CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCC
T ss_pred ccCccc------------------------cCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcc
Confidence 555543 2333223344555555555555543322 1234445555555555555
Q ss_pred cccCc--ccccCCCCCCEEEccCCcCCccCcccccccchhhhccCCCCCCCcccceeecCCcccCcccccccceEeeecC
Q 003893 503 EGEVP--IQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKS 580 (788)
Q Consensus 503 ~~~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~ 580 (788)
++..+ ..+..+++|++|++++|++++ +|..+...
T Consensus 374 ~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-lp~~~~~~------------------------------------------- 409 (549)
T 2z81_A 374 RSMQKTGEILLTLKNLTSLDISRNTFHP-MPDSCQWP------------------------------------------- 409 (549)
T ss_dssp CCHHHHHHHGGGCTTCCEEECTTCCCCC-CCSCCCCC-------------------------------------------
T ss_pred cccccchhhhhcCCCCCEEECCCCCCcc-CChhhccc-------------------------------------------
Confidence 43221 234455555555555555542 22222111
Q ss_pred ceecccCCccCCCceEECCCCcccccCcccccccccCCeEeCCCCCCCCCCCcccCCCCCCCeeeCCCcccCccCchhhh
Q 003893 581 ITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLV 660 (788)
Q Consensus 581 ~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~ 660 (788)
++|++|++++|++++. |..+ .++|+.|+|++|++++.. ..+++|++|++++|+++ .+|. ..
T Consensus 410 ----------~~L~~L~Ls~N~l~~l-~~~~--~~~L~~L~Ls~N~l~~~~----~~l~~L~~L~Ls~N~l~-~ip~-~~ 470 (549)
T 2z81_A 410 ----------EKMRFLNLSSTGIRVV-KTCI--PQTLEVLDVSNNNLDSFS----LFLPRLQELYISRNKLK-TLPD-AS 470 (549)
T ss_dssp ----------TTCCEEECTTSCCSCC-CTTS--CTTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCS-SCCC-GG
T ss_pred ----------ccccEEECCCCCcccc-cchh--cCCceEEECCCCChhhhc----ccCChhcEEECCCCccC-cCCC-cc
Confidence 1455555555555422 2211 135555555555555432 34555566666666555 3343 23
Q ss_pred cCCCCcEEecccCcCcccCCCCccccCCCCcCCcCCCCCCCCCC
Q 003893 661 ELNTLAVFSVAYNNLSGKIPERAAQFATFNESSYEGNPFLCGPP 704 (788)
Q Consensus 661 ~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~~~~~~Np~~C~~~ 704 (788)
.+++|++|++++|++++.+|..+..+++++.+++++|||.|+|+
T Consensus 471 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 514 (549)
T 2z81_A 471 LFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 514 (549)
T ss_dssp GCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHH
T ss_pred cCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCc
Confidence 45556666666666665555555555556666666666666654
No 14
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=1.3e-44 Score=408.14 Aligned_cols=495 Identities=19% Similarity=0.142 Sum_probs=349.2
Q ss_pred ccEEEcCCcccccCccchhHhhhcCCCCCEEeCCCCCCCCcccCCCCccCCCCCCCEEEcCCCCCCCCccHhhhcCCCCC
Q 003893 21 LKELYMDDARIALNTSFLQIIGESMPSIQYLSLSNSSVSNNSRTLDQGLCPLVHLQELHMADNDLRGSLPWCLANMTSLR 100 (788)
Q Consensus 21 L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~l~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~ 100 (788)
..+.+.++ ..+. .+|..+ .++|++|++++|.+++..+ .++.++++|++|++++|++++..|..|+++++|+
T Consensus 7 ~~~c~~~~--~~l~-~ip~~~---~~~L~~L~Ls~n~l~~~~~---~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~ 77 (549)
T 2z81_A 7 SGVCDGRS--RSFT-SIPSGL---TAAMKSLDLSFNKITYIGH---GDLRACANLQVLILKSSRINTIEGDAFYSLGSLE 77 (549)
T ss_dssp TSEEECTT--SCCS-SCCSCC---CTTCCEEECCSSCCCEECS---STTSSCTTCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred CceEECCC--Cccc-cccccC---CCCccEEECcCCccCccCh---hhhhcCCcccEEECCCCCcCccChhhccccccCC
Confidence 33456665 3332 344433 3589999999999876655 6799999999999999999988889999999999
Q ss_pred EEeCCCCcCcCCCChhhhcCCCCCCEEEcCCCcccCccCccccCCCCCccEEEccCCccchhhhccccCCCCcccccEEE
Q 003893 101 ILDVSSNQLIGSISSSPLIHLTSIEDLILSDNHFQIPISLEPLFNHSRLKIFDAENNEINAEIIESHSLTTPNFQLQSLL 180 (788)
Q Consensus 101 ~L~Ls~n~l~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~ 180 (788)
+|++++|.+.+ ++...++++++|++|++++|.+++......+.++++|++|++++|.+
T Consensus 78 ~L~Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~--------------------- 135 (549)
T 2z81_A 78 HLDLSDNHLSS-LSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVET--------------------- 135 (549)
T ss_dssp EEECTTSCCCS-CCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSS---------------------
T ss_pred EEECCCCccCc-cCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCcc---------------------
Confidence 99999999985 45537999999999999999987422223566666777666666542
Q ss_pred ccCCCcCCccCCccccCCCCCcEEEecCCCCCccCchHHhhcCCCCCEEEccCCcccCcCccCccCCCCcCEEEccCCcC
Q 003893 181 LSSGYRDGITFPKFLYNQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDSLVGPFRLPIHSHKQLRLLDVSKNNF 260 (788)
Q Consensus 181 l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l 260 (788)
.+.++...+.++++|++|++++|.+++..+..+..+++|++|++++|.+
T Consensus 136 -------------------------------~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~ 184 (549)
T 2z81_A 136 -------------------------------FSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSES 184 (549)
T ss_dssp -------------------------------CCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBS
T ss_pred -------------------------------ccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCcc
Confidence 1222222234556666666666666665566666777788888888777
Q ss_pred cccCChhhhhcCCCCcEEEeeCCcCCCCC--C-ccccCCCCCCEEEccCCcCCCccchHHh---hCCCCCcEEEcccccc
Q 003893 261 QGHIPLEIGDILSRLTVFNISMNALDGSI--P-SSFGNMNFLQFLDLSNNQLTGEIPEHLA---MGCVSLRSLALSNNNL 334 (788)
Q Consensus 261 ~~~~~~~~~~~~~~L~~L~L~~n~l~~~~--~-~~~~~l~~L~~L~L~~n~i~~~~~~~~~---~~l~~L~~L~l~~n~i 334 (788)
. .+|..+...+++|++|++++|.+.+.. + .....+++|+.|++++|.+++..+..+. ..+++|+.+++++|.+
T Consensus 185 ~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~ 263 (549)
T 2z81_A 185 A-FLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTL 263 (549)
T ss_dssp T-THHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEE
T ss_pred c-ccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccc
Confidence 5 566666666788999999998887532 1 2234578888999988887754444332 2456777777777766
Q ss_pred CccccccccCCCccCceeccCccCcccCCccCCCCCCCcEEEcccCcCCCC-----CCccccCCCCccEEEccCCeeccC
Q 003893 335 EGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGK-----IPRWLGNLTVLRHIIMPKNHIEGP 409 (788)
Q Consensus 335 ~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~-----~~~~l~~l~~L~~L~l~~n~~~~~ 409 (788)
.+.... + . .....+..+++|+.|++.++.+... .+..+...++|+.|++++|.+...
T Consensus 264 ~~~~~~-----~---~----------~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~i 325 (549)
T 2z81_A 264 NGLGDF-----N---P----------SESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLV 325 (549)
T ss_dssp ECCSCC-----C---C----------CTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCC
T ss_pred cccccc-----c---c----------cchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccccC
Confidence 542110 0 0 0112234455666666666654421 111123356788888888888743
Q ss_pred chhhhhcccCCcEEeccCCcCCCCCCCCCCCCcccEEEccCcccccccCcccccccccccEEeCCCCccCCCCC--cccc
Q 003893 410 IPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIP--DRVD 487 (788)
Q Consensus 410 ~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~--~~~~ 487 (788)
....+..+++|++|++++|++.+..+.. ...+..+++|++|++++|++++..+ ..+.
T Consensus 326 p~~~~~~l~~L~~L~Ls~N~l~~~~~~~---------------------~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~ 384 (549)
T 2z81_A 326 PCSFSQHLKSLEFLDLSENLMVEEYLKN---------------------SACKGAWPSLQTLVLSQNHLRSMQKTGEILL 384 (549)
T ss_dssp CHHHHHHCTTCCEEECCSSCCCHHHHHH---------------------HTCTTSSTTCCEEECTTSCCCCHHHHHHHGG
T ss_pred CHHHHhcCccccEEEccCCccccccccc---------------------hhhhhccccCcEEEccCCcccccccchhhhh
Confidence 3333467888999999888876322100 1135567778888888888775432 4577
Q ss_pred CCcCCcEEEccCccCcccCcccccCCCCCCEEEccCCcCCccCcccccccchhhhccCCCCCCCcccceeecCCcccCcc
Q 003893 488 GLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPK 567 (788)
Q Consensus 488 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 567 (788)
.+++|++|++++|+++ .+|..+..+++|++|++++|++++...
T Consensus 385 ~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~~l~~------------------------------------ 427 (549)
T 2z81_A 385 TLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIRVVKT------------------------------------ 427 (549)
T ss_dssp GCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCSCCCT------------------------------------
T ss_pred cCCCCCEEECCCCCCc-cCChhhcccccccEEECCCCCcccccc------------------------------------
Confidence 7888888888888887 567777888888888888888764321
Q ss_pred cccccceEeeecCceecccCCccCCCceEECCCCcccccCcccccccccCCeEeCCCCCCCCCCCcccCCCCCCCeeeCC
Q 003893 568 KQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLS 647 (788)
Q Consensus 568 ~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 647 (788)
.+|++|++|++++|++++.. ..+++|++|+|++|+++ .+|. ...+++|++|+++
T Consensus 428 --------------------~~~~~L~~L~Ls~N~l~~~~----~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls 481 (549)
T 2z81_A 428 --------------------CIPQTLEVLDVSNNNLDSFS----LFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKIS 481 (549)
T ss_dssp --------------------TSCTTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECC
T ss_pred --------------------hhcCCceEEECCCCChhhhc----ccCChhcEEECCCCccC-cCCC-cccCccCCEEecC
Confidence 12347899999999988643 57889999999999998 4554 4678999999999
Q ss_pred CcccCccCchhhhcCCCCcEEecccCcCcccCC
Q 003893 648 YNKLSWKIPYQLVELNTLAVFSVAYNNLSGKIP 680 (788)
Q Consensus 648 ~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~ 680 (788)
+|++++..|..+..+++|+.|++++|+++|..|
T Consensus 482 ~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 514 (549)
T 2z81_A 482 RNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 514 (549)
T ss_dssp SSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHH
T ss_pred CCccCCcCHHHHhcCcccCEEEecCCCccCCCc
Confidence 999998888889999999999999999998766
No 15
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=1.4e-43 Score=407.94 Aligned_cols=542 Identities=20% Similarity=0.203 Sum_probs=341.3
Q ss_pred CCCEEEcCCCCCCCCccHhhhcCCCCCEEeCCCCcCcCCCChhhhcCCCCCCEEEcCCCcccCccCccccCCCCCccEEE
Q 003893 74 HLQELHMADNDLRGSLPWCLANMTSLRILDVSSNQLIGSISSSPLIHLTSIEDLILSDNHFQIPISLEPLFNHSRLKIFD 153 (788)
Q Consensus 74 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~ 153 (788)
++++|+|++|+|++..+.+|.++++|++|||++|.|. .++.++|.++++|++|+|++|++++ ++...|.++++|++|+
T Consensus 53 ~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~-~i~~~~f~~L~~L~~L~Ls~N~l~~-l~~~~f~~L~~L~~L~ 130 (635)
T 4g8a_A 53 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQS-LALGAFSGLSSLQKLV 130 (635)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCC-EECTTTTTTCTTCCEEECTTCCCCE-ECGGGGTTCTTCCEEE
T ss_pred CCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCC-CcChhHhcCCCCCCEEEccCCcCCC-CCHHHhcCCCCCCEEE
Confidence 5677777777776655666777777777777777666 3444366667777777777776653 3434566666666666
Q ss_pred ccCCccchhhhccccCCCCcccccEEEccCCCcCCccCCccccCCCCCcEEEecCCCCCccCchHHhhcCCCCCEEEccC
Q 003893 154 AENNEINAEIIESHSLTTPNFQLQSLLLSSGYRDGITFPKFLYNQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVN 233 (788)
Q Consensus 154 l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~ 233 (788)
+++|++.+. .+..++.+++|++|++++|.+++......++.+++|++|++++
T Consensus 131 Ls~N~l~~l----------------------------~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~ 182 (635)
T 4g8a_A 131 AVETNLASL----------------------------ENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSS 182 (635)
T ss_dssp CTTSCCCCS----------------------------TTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCS
T ss_pred CCCCcCCCC----------------------------ChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccC
Confidence 666654321 1123445556666666666654432222235667777777777
Q ss_pred CcccCcCccCccCCCC----cCEEEccCCcCcccCChhhhhcCCCCcEEEeeCCcCCCCCCccccCCCCCCEEEccCCcC
Q 003893 234 DSLVGPFRLPIHSHKQ----LRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQL 309 (788)
Q Consensus 234 ~~~~~~~~~~~~~~~~----L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i 309 (788)
|.+++..+..+..+.. ...++++.|.+. .++...+. ...++.+++.+|. .
T Consensus 183 N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~-~i~~~~~~-~~~~~~l~l~~n~------------------------~ 236 (635)
T 4g8a_A 183 NKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFK-EIRLHKLTLRNNF------------------------D 236 (635)
T ss_dssp SCCCEECGGGGHHHHTCTTCCCEEECTTCCCC-EECTTTTT-TCEEEEEEEESCC------------------------S
T ss_pred ccccccccccccchhhhhhhhhhhhcccCccc-ccCccccc-chhhhhhhhhccc------------------------c
Confidence 7666555444433222 224555555554 23332222 1234444444443 3
Q ss_pred CCccchHHhhCCCCCcEEEcccccc------CccccccccCCCccCceeccCccCc---ccCCccCCCCCCCcEEEcccC
Q 003893 310 TGEIPEHLAMGCVSLRSLALSNNNL------EGHMFSRNFNLTNLIWLQLEGNHFV---GEIPQSLSKCSSLQGLFLSNN 380 (788)
Q Consensus 310 ~~~~~~~~~~~l~~L~~L~l~~n~i------~~~~~~~~~~l~~L~~L~l~~n~~~---~~~~~~~~~l~~L~~L~l~~n 380 (788)
...++...+.++..++...+..+.. .......+.....+....+..+... ......+....+++.+.+.++
T Consensus 237 ~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~ 316 (635)
T 4g8a_A 237 SLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSV 316 (635)
T ss_dssp SHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESC
T ss_pred cccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhhcccccchhhhhhhhccccccccccc
Confidence 2223333333344444333322211 1111122222233333333222211 112223444555666666655
Q ss_pred cCCCCCCccccCCCCccEEEccCCeeccCchhhhhcccCCcEEeccCCcCCCCCCCCCCCCcccEEEccCccccccc-Cc
Q 003893 381 SLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQL-KE 459 (788)
Q Consensus 381 ~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~-~~ 459 (788)
.+... ..+.....++.|++.+|.+....+ ..++.|+.+++..|.... ......+++|+.++++.|.+.... ..
T Consensus 317 ~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~---~~l~~L~~l~l~~n~~~~-~~~~~~l~~L~~L~ls~n~l~~~~~~~ 390 (635)
T 4g8a_A 317 TIERV--KDFSYNFGWQHLELVNCKFGQFPT---LKLKSLKRLTFTSNKGGN-AFSEVDLPSLEFLDLSRNGLSFKGCCS 390 (635)
T ss_dssp EEEEC--GGGGSCCCCSEEEEESCEESSCCC---CBCTTCCEEEEESCCSCC-BCCCCBCTTCCEEECCSSCCBEEEECC
T ss_pred ccccc--cccccchhhhhhhcccccccCcCc---ccchhhhhcccccccCCC-Ccccccccccccchhhccccccccccc
Confidence 54422 123444556666666666553332 234556666666665542 223334666666666666553211 11
Q ss_pred ccccccccccEEeCCCCccCCCCCccccCCcCCcEEEccCccCcccC-cccccCCCCCCEEEccCCcCCccCcccccccc
Q 003893 460 GTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEV-PIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTT 538 (788)
Q Consensus 460 ~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~ 538 (788)
..+..+.+|+++++..+.+.. .+..+..+++|+.+++.++...... +..+..+++++.+++++|.+.+..+..+....
T Consensus 391 ~~~~~~~~L~~L~~~~~~~~~-~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~ 469 (635)
T 4g8a_A 391 QSDFGTISLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLS 469 (635)
T ss_dssp HHHHSCSCCCEEECCSCSEEE-ECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCT
T ss_pred cchhhhhhhhhhhcccccccc-ccccccccccccchhhhhccccccccccccccccccccccccccccccccccccccch
Confidence 255667889999999998764 4556778899999999988765443 45678899999999999999887776665544
Q ss_pred hhhhccCCCCCCCcccceeecCCcccCcccccccceEeeecCceecccCCccCCCceEECCCCccc-ccCcccccccccC
Q 003893 539 LHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLI-GHIPPQIGNLTKI 617 (788)
Q Consensus 539 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~-~~~~~~~~~l~~L 617 (788)
.++.|++++|.+. +..|..|..+++|
T Consensus 470 -----------------------------------------------------~L~~L~Ls~N~~~~~~~~~~~~~l~~L 496 (635)
T 4g8a_A 470 -----------------------------------------------------SLEVLKMAGNSFQENFLPDIFTELRNL 496 (635)
T ss_dssp -----------------------------------------------------TCCEEECTTCEEGGGEECSCCTTCTTC
T ss_pred -----------------------------------------------------hhhhhhhhhcccccccCchhhhhcccc
Confidence 8999999999754 4678889999999
Q ss_pred CeEeCCCCCCCCCCCcccCCCCCCCeeeCCCcccCccCchhhhcCCCCcEEecccCcCcccCCCCcccc-CCCCcCCcCC
Q 003893 618 QTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSGKIPERAAQF-ATFNESSYEG 696 (788)
Q Consensus 618 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~-~~l~~~~~~~ 696 (788)
++|+|++|++++..|..|.++++|++|+|++|+|++..|..|..+++|++|++++|++++..|..+..+ ++++.+++++
T Consensus 497 ~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~ 576 (635)
T 4g8a_A 497 TFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQ 576 (635)
T ss_dssp CEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTT
T ss_pred CEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeC
Confidence 999999999999999999999999999999999999889999999999999999999999999988887 6899999999
Q ss_pred CCCCCCCCCCCC-----------CCCCCCCCCCCCCCCCCCccchh
Q 003893 697 NPFLCGPPLPIC-----------ISPTTMPEASPSNEGDNNLIDMD 731 (788)
Q Consensus 697 Np~~C~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~ 731 (788)
|||.|+|+..+. ..+....|++|...++..+.+++
T Consensus 577 Np~~C~C~~~~~~~wl~~~~~~~~~~~~~~C~~P~~~~g~~l~~~~ 622 (635)
T 4g8a_A 577 NDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDKQGMPVLSLN 622 (635)
T ss_dssp CCBCCSGGGHHHHHHHHHTTTTBSCGGGCBBCSSTTTTTCBGGGCC
T ss_pred CCCcccCCcHHHHHHHHhCCCccCCCCCceeCCchHHCCCEeeeec
Confidence 999999985321 12334567778778877766654
No 16
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=6.9e-45 Score=414.03 Aligned_cols=240 Identities=18% Similarity=0.208 Sum_probs=156.7
Q ss_pred CcCCccCCccccCCCCCcEEEecCCCCCcc-----------------CchHHhh--cCCCCCEEEccCCcccCcCccCcc
Q 003893 185 YRDGITFPKFLYNQHDLEYVRLSHIKMNEE-----------------FPNWLLE--NNTKLRQLSLVNDSLVGPFRLPIH 245 (788)
Q Consensus 185 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-----------------~~~~~~~--~l~~L~~L~l~~~~~~~~~~~~~~ 245 (788)
+.+.+ +|..+.++++|++|++++|.+++. +|..+ + ++++|++|++++|.+.+..+..+.
T Consensus 193 n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l-~~~~l~~L~~L~L~~n~l~~~~p~~l~ 270 (636)
T 4eco_A 193 NNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDL-KWDNLKDLTDVEVYNCPNLTKLPTFLK 270 (636)
T ss_dssp CEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCC-CGGGCTTCCEEEEECCTTCSSCCTTTT
T ss_pred CCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhh-hhcccCCCCEEEecCCcCCccChHHHh
Confidence 34455 777788888888888888888774 56554 4 677777777777777777777777
Q ss_pred CCCCcCEEEccCCc-Ccc-cCChhhhhc-----CCCCcEEEeeCCcCCCCCCc--cccCCCCCCEEEccCCcCCCccchH
Q 003893 246 SHKQLRLLDVSKNN-FQG-HIPLEIGDI-----LSRLTVFNISMNALDGSIPS--SFGNMNFLQFLDLSNNQLTGEIPEH 316 (788)
Q Consensus 246 ~~~~L~~L~l~~n~-l~~-~~~~~~~~~-----~~~L~~L~L~~n~l~~~~~~--~~~~l~~L~~L~L~~n~i~~~~~~~ 316 (788)
.+++|++|++++|. +++ .+|..+... +++|++|++++|.++ .+|. .++.+++|++|++++|.+++.+|
T Consensus 271 ~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-- 347 (636)
T 4eco_A 271 ALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-- 347 (636)
T ss_dssp TCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC--
T ss_pred cCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh--
Confidence 77777777777776 766 566666542 267777777777776 5666 67777777777777777766666
Q ss_pred HhhCCCCCcEEEccccccCccccccccCCCc-cCceeccCccCcccCCccCCCCC--CCcEEEcccCcCCCCCCcccc--
Q 003893 317 LAMGCVSLRSLALSNNNLEGHMFSRNFNLTN-LIWLQLEGNHFVGEIPQSLSKCS--SLQGLFLSNNSLSGKIPRWLG-- 391 (788)
Q Consensus 317 ~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~-L~~L~l~~n~~~~~~~~~~~~l~--~L~~L~l~~n~l~~~~~~~l~-- 391 (788)
.+..+++|++|++++|.++ ..+..+..+++ |++|++++|.+. .+|..+...+ +|++|++++|.+.+..|..+.
T Consensus 348 ~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~ 425 (636)
T 4eco_A 348 AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPL 425 (636)
T ss_dssp CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTT
T ss_pred hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhccc
Confidence 3334666777777777666 34445666666 666666666666 5555555443 666666666666666665555
Q ss_pred -----CCCCccEEEccCCeeccCchhhhhcccCCcEEeccCCcCC
Q 003893 392 -----NLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNIS 431 (788)
Q Consensus 392 -----~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~ 431 (788)
.+++|++|++++|.+....+..+..+++|++|++++|+++
T Consensus 426 ~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~ 470 (636)
T 4eco_A 426 DPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT 470 (636)
T ss_dssp CSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS
T ss_pred ccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC
Confidence 4555666666666555433334444555555555555554
No 17
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=2.6e-42 Score=397.33 Aligned_cols=515 Identities=19% Similarity=0.175 Sum_probs=365.3
Q ss_pred CCCEEeCCCCCCCCcccCCCCccCCCCCCCEEEcCCCCCCCCccHhhhcCCCCCEEeCCCCcCcCCCChhhhcCCCCCCE
Q 003893 47 SIQYLSLSNSSVSNNSRTLDQGLCPLVHLQELHMADNDLRGSLPWCLANMTSLRILDVSSNQLIGSISSSPLIHLTSIED 126 (788)
Q Consensus 47 ~L~~L~L~~~~l~~~~~~l~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~ 126 (788)
++++|||++|.|+...+ .+|.++++|++|+|++|+++++.+.+|.++++|++|+|++|++. .+|...|.++++|++
T Consensus 53 ~~~~LdLs~N~i~~l~~---~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~-~l~~~~f~~L~~L~~ 128 (635)
T 4g8a_A 53 STKNLDLSFNPLRHLGS---YSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ-SLALGAFSGLSSLQK 128 (635)
T ss_dssp TCCEEECTTSCCCEECT---TTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC-EECGGGGTTCTTCCE
T ss_pred CCCEEEeeCCCCCCCCH---HHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCC-CCCHHHhcCCCCCCE
Confidence 79999999999876655 67999999999999999999888888999999999999999988 566557899999999
Q ss_pred EEcCCCcccCccCccccCCCCCccEEEccCCccchhhhccccCCCCcccccEEEccCCCcCCccCCccccCCCCCcEEEe
Q 003893 127 LILSDNHFQIPISLEPLFNHSRLKIFDAENNEINAEIIESHSLTTPNFQLQSLLLSSGYRDGITFPKFLYNQHDLEYVRL 206 (788)
Q Consensus 127 L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l 206 (788)
|++++|.+++ ++...++++++|++|++++|.+... ..|..+..+++|++|++
T Consensus 129 L~Ls~N~l~~-l~~~~~~~L~~L~~L~Ls~N~l~~~---------------------------~~~~~~~~l~~L~~L~L 180 (635)
T 4g8a_A 129 LVAVETNLAS-LENFPIGHLKTLKELNVAHNLIQSF---------------------------KLPEYFSNLTNLEHLDL 180 (635)
T ss_dssp EECTTSCCCC-STTCCCTTCTTCCEEECCSSCCCCC---------------------------CCCGGGGGCTTCCEEEC
T ss_pred EECCCCcCCC-CChhhhhcCcccCeeccccCccccC---------------------------CCchhhccchhhhhhcc
Confidence 9999999875 4445788999999999999876421 24566778889999999
Q ss_pred cCCCCCccCchHHhhcCC----CCCEEEccCCcccCcCccCccCCCCcCEEEccCCcCcccCChhhhhcCCCCcEEEeeC
Q 003893 207 SHIKMNEEFPNWLLENNT----KLRQLSLVNDSLVGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISM 282 (788)
Q Consensus 207 ~~~~~~~~~~~~~~~~l~----~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~ 282 (788)
++|.+++..+..+ +.+. ....++++.|.+....+..+. ...++.+++.+|.....++...+..++.++...+..
T Consensus 181 ~~N~l~~~~~~~l-~~L~~l~~~~~~~~ls~n~l~~i~~~~~~-~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~ 258 (635)
T 4g8a_A 181 SSNKIQSIYCTDL-RVLHQMPLLNLSLDLSLNPMNFIQPGAFK-EIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVL 258 (635)
T ss_dssp CSSCCCEECGGGG-HHHHTCTTCCCEEECTTCCCCEECTTTTT-TCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEE
T ss_pred cCccccccccccc-cchhhhhhhhhhhhcccCcccccCccccc-chhhhhhhhhcccccccccchhhcCCcccccccccc
Confidence 9999877665543 3333 345788888888766554443 345678888888665444445555567777766654
Q ss_pred CcC------CCCCCccccCCCCCCEEEccCCcCCCccc--hHHhhCCCCCcEEEccccccCccccccccCCCccCceecc
Q 003893 283 NAL------DGSIPSSFGNMNFLQFLDLSNNQLTGEIP--EHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLE 354 (788)
Q Consensus 283 n~l------~~~~~~~~~~l~~L~~L~L~~n~i~~~~~--~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~ 354 (788)
+.. .......+.....+...++..+....... ...+..+.+++.+.+.++.+.... .+.....|+.|++.
T Consensus 259 ~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~--~~~~~~~L~~L~l~ 336 (635)
T 4g8a_A 259 GEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVK--DFSYNFGWQHLELV 336 (635)
T ss_dssp ECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECG--GGGSCCCCSEEEEE
T ss_pred cccccccccccccccccccccchhhhhhhhhhhcccccchhhhhhhhccccccccccccccccc--ccccchhhhhhhcc
Confidence 332 22233345555666666665443321111 112234567888888877765433 34456778888888
Q ss_pred CccCcccCCccCCCCCCCcEEEcccCcCCCCCCccccCCCCccEEEccCCeecc--CchhhhhcccCCcEEeccCCcCCC
Q 003893 355 GNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEG--PIPLEFCQLRILQILDISDNNISG 432 (788)
Q Consensus 355 ~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~--~~~~~~~~l~~L~~L~l~~n~~~~ 432 (788)
+|.+....+ ..++.|+.+++..|..... .....+++|+.++++.|.+.. ..+..+..+.+|+.+++..+....
T Consensus 337 ~~~~~~~~~---~~l~~L~~l~l~~n~~~~~--~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~ 411 (635)
T 4g8a_A 337 NCKFGQFPT---LKLKSLKRLTFTSNKGGNA--FSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVIT 411 (635)
T ss_dssp SCEESSCCC---CBCTTCCEEEEESCCSCCB--CCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEE
T ss_pred cccccCcCc---ccchhhhhcccccccCCCC--cccccccccccchhhccccccccccccchhhhhhhhhhhcccccccc
Confidence 887764433 2456777888887776532 233467788888888777643 334455667777777777776543
Q ss_pred CCCCCCCCCcccEEEccCcccccccCcccccccccccEEeCCCCccCCCCC-ccccCCcCCcEEEccCccCcccCccccc
Q 003893 433 SLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIP-DRVDGLSQLSYLILAHNNLEGEVPIQLC 511 (788)
Q Consensus 433 ~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 511 (788)
..+ .+..+++|+.++++++......+ ..+..+++++.++++.|.+....+..+.
T Consensus 412 ~~~-------------------------~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~ 466 (635)
T 4g8a_A 412 MSS-------------------------NFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFN 466 (635)
T ss_dssp ECS-------------------------CCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTT
T ss_pred ccc-------------------------cccccccccchhhhhccccccccccccccccccccccccccccccccccccc
Confidence 222 35556666777776665543332 3456667777777777777766666777
Q ss_pred CCCCCCEEEccCCcCC-ccCcccccccchhhhccCCCCCCCcccceeecCCcccCcccccccceEeeecCceecccCCcc
Q 003893 512 RLNQLQLLDLSNNNLH-GHIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVP 590 (788)
Q Consensus 512 ~l~~L~~L~L~~n~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~ 590 (788)
.+++|+.|++++|.+. +..|..|..++
T Consensus 467 ~~~~L~~L~Ls~N~~~~~~~~~~~~~l~---------------------------------------------------- 494 (635)
T 4g8a_A 467 GLSSLEVLKMAGNSFQENFLPDIFTELR---------------------------------------------------- 494 (635)
T ss_dssp TCTTCCEEECTTCEEGGGEECSCCTTCT----------------------------------------------------
T ss_pred cchhhhhhhhhhcccccccCchhhhhcc----------------------------------------------------
Confidence 7777777777777643 33454554443
Q ss_pred CCCceEECCCCcccccCcccccccccCCeEeCCCCCCCCCCCcccCCCCCCCeeeCCCcccCccCchhhhcC-CCCcEEe
Q 003893 591 SLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVEL-NTLAVFS 669 (788)
Q Consensus 591 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l-~~L~~L~ 669 (788)
+|++|+|++|++++..|..|.++++|++|+|++|+|++..|..|.++++|++|||++|+|++..|..+..+ ++|+.|+
T Consensus 495 -~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~ 573 (635)
T 4g8a_A 495 -NLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLN 573 (635)
T ss_dssp -TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEE
T ss_pred -ccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEE
Confidence 67888888888888888888888899999999999988888888888999999999999988888888887 6799999
Q ss_pred cccCcCcccCC
Q 003893 670 VAYNNLSGKIP 680 (788)
Q Consensus 670 l~~N~l~~~~~ 680 (788)
+++|+++|...
T Consensus 574 L~~Np~~C~C~ 584 (635)
T 4g8a_A 574 LTQNDFACTCE 584 (635)
T ss_dssp CTTCCBCCSGG
T ss_pred eeCCCCcccCC
Confidence 99999987643
No 18
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=2.5e-43 Score=394.38 Aligned_cols=459 Identities=19% Similarity=0.160 Sum_probs=278.0
Q ss_pred CEEeCCCCCCCCcccCCCCccCCCCCCCEEEcCCCCCCCCccHhhhcCCCCCEEeCCCCcCcCCCChhhhcCCCCCCEEE
Q 003893 49 QYLSLSNSSVSNNSRTLDQGLCPLVHLQELHMADNDLRGSLPWCLANMTSLRILDVSSNQLIGSISSSPLIHLTSIEDLI 128 (788)
Q Consensus 49 ~~L~L~~~~l~~~~~~l~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~ 128 (788)
++|++++|.++.. | ..+. ++|++|++++|.+++..|..|.++++|++|++++|.+.+..|. .+.++++|++|+
T Consensus 3 ~~l~ls~n~l~~i-p---~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~ 75 (520)
T 2z7x_B 3 FLVDRSKNGLIHV-P---KDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDIS-VFKFNQELEYLD 75 (520)
T ss_dssp CEEECTTSCCSSC-C---CSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGG-GGTTCTTCCEEE
T ss_pred ceEecCCCCcccc-c---cccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChH-HhhcccCCCEEe
Confidence 5788888887632 3 4444 7888888888888877778888888888888888888754454 778888888888
Q ss_pred cCCCcccCccCccccCCCCCccEEEccCCccchhhhccccCCCCcccccEEEccCCCcCCccCCccccCCCCCcEEEecC
Q 003893 129 LSDNHFQIPISLEPLFNHSRLKIFDAENNEINAEIIESHSLTTPNFQLQSLLLSSGYRDGITFPKFLYNQHDLEYVRLSH 208 (788)
Q Consensus 129 l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~ 208 (788)
+++|+++ .++.. .+++ |++|++++
T Consensus 76 Ls~N~l~-~lp~~---~l~~----------------------------------------------------L~~L~L~~ 99 (520)
T 2z7x_B 76 LSHNKLV-KISCH---PTVN----------------------------------------------------LKHLDLSF 99 (520)
T ss_dssp CCSSCCC-EEECC---CCCC----------------------------------------------------CSEEECCS
T ss_pred cCCCcee-ecCcc---ccCC----------------------------------------------------ccEEeccC
Confidence 8888765 23311 3444 44444444
Q ss_pred CCCCc-cCchHHhhcCCCCCEEEccCCcccCcCccCccCCCCc--CEEEccCCcC--cccCChhhhhcCCCCcEEEeeCC
Q 003893 209 IKMNE-EFPNWLLENNTKLRQLSLVNDSLVGPFRLPIHSHKQL--RLLDVSKNNF--QGHIPLEIGDILSRLTVFNISMN 283 (788)
Q Consensus 209 ~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L--~~L~l~~n~l--~~~~~~~~~~~~~~L~~L~L~~n 283 (788)
|.+++ .+|.. ++++++|++|++++|.+++ ..+..+++| ++|++++|.+ .+..|..+...-.+...+++++|
T Consensus 100 N~l~~~~~p~~-~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n 175 (520)
T 2z7x_B 100 NAFDALPICKE-FGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTN 175 (520)
T ss_dssp SCCSSCCCCGG-GGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSS
T ss_pred Cccccccchhh-hccCCcceEEEecCcccch---hhccccccceeeEEEeecccccccccccccccccccceEEEEeccC
Confidence 44443 23444 3677888888888877764 234445555 6666666666 44444443321111224445555
Q ss_pred cCCCCCC-ccccCCCCCCEEEccCCc-------CCCccchHHhhCCCCCcEEEccccccCccccccccCCCccCceeccC
Q 003893 284 ALDGSIP-SSFGNMNFLQFLDLSNNQ-------LTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEG 355 (788)
Q Consensus 284 ~l~~~~~-~~~~~l~~L~~L~L~~n~-------i~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~ 355 (788)
.+.+..+ ..+..+++|+.|++++|. +.+.+| . +..+++|+.|++++|.+.+.....+
T Consensus 176 ~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~-l~~l~~L~~L~l~~~~l~~~~~~~~------------- 240 (520)
T 2z7x_B 176 KEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-K-LQTNPKLSNLTLNNIETTWNSFIRI------------- 240 (520)
T ss_dssp SCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-G-GGGCTTCCEEEEEEEEEEHHHHHHH-------------
T ss_pred cchhhhhhhhhhcccceeeccccccccccccceeecchh-h-hccccchhhccccccccCHHHHHHH-------------
Confidence 5443332 234455555555555554 222222 1 1234444444444444332111100
Q ss_pred ccCcccCCccCCCCCCCcEEEcccCcCCCCCCccc-----cCCCCccEEEccCCeeccCchhhhhcc---cCCcEEeccC
Q 003893 356 NHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWL-----GNLTVLRHIIMPKNHIEGPIPLEFCQL---RILQILDISD 427 (788)
Q Consensus 356 n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l-----~~l~~L~~L~l~~n~~~~~~~~~~~~l---~~L~~L~l~~ 427 (788)
. .. ...++|++|++++|.+.+.+|..+ ..+++|+.+++++|.+ ......+..+ .+|+.|++++
T Consensus 241 ------~-~~-~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~-~~p~~~~~~~~~~~~L~~L~l~~ 311 (520)
T 2z7x_B 241 ------L-QL-VWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF-GFPQSYIYEIFSNMNIKNFTVSG 311 (520)
T ss_dssp ------H-HH-HHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC-CSCTHHHHHHHHTCCCSEEEEES
T ss_pred ------H-HH-hhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce-ecchhhhhcccccCceeEEEcCC
Confidence 0 00 012355556666665555555554 5666666666666666 2222333333 5677777777
Q ss_pred CcCCCCCCCCCCCCcccEEEccCcccccccCcccccccccccEEeCCCCccCCCCCccccCCcCCcEEEccCccCcc--c
Q 003893 428 NNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEG--E 505 (788)
Q Consensus 428 n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~--~ 505 (788)
|.+... + .+..+++|++|++++|++++..|..+..+++|++|++++|++++ .
T Consensus 312 n~l~~~------------------------~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~ 365 (520)
T 2z7x_B 312 TRMVHM------------------------L--CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSK 365 (520)
T ss_dssp SCCCCC------------------------C--CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHH
T ss_pred Cccccc------------------------c--chhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCcccc
Confidence 765421 1 12466778888888888887777788888888888888888875 3
Q ss_pred CcccccCCCCCCEEEccCCcCCccCcc-cccccchhhhccCCCCCCCcccceeecCCcccCcccccccceEeeecCceec
Q 003893 506 VPIQLCRLNQLQLLDLSNNNLHGHIPS-CFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYT 584 (788)
Q Consensus 506 ~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~ 584 (788)
.|..+..+++|++|++++|++++.+|. .+...+
T Consensus 366 ~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~---------------------------------------------- 399 (520)
T 2z7x_B 366 IAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTK---------------------------------------------- 399 (520)
T ss_dssp HHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCT----------------------------------------------
T ss_pred chHHHhhCCCCCEEECCCCcCCcccccchhccCc----------------------------------------------
Confidence 456677888888888888888763332 232222
Q ss_pred ccCCccCCCceEECCCCcccccCcccccccccCCeEeCCCCCCCCCCCcccCCCCCCCeeeCCCcccCccCchhhhcCCC
Q 003893 585 YQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNT 664 (788)
Q Consensus 585 ~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~ 664 (788)
+|++|++++|++++..|..+. ++|+.|++++|+++ .+|..+..+++|++|++++|+++...+..+..+++
T Consensus 400 -------~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~ 469 (520)
T 2z7x_B 400 -------SLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTS 469 (520)
T ss_dssp -------TCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred -------cCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCccCHHHhccCCc
Confidence 677777777777766655543 57777777777777 45555557777777777777777433333666777
Q ss_pred CcEEecccCcCcccCC
Q 003893 665 LAVFSVAYNNLSGKIP 680 (788)
Q Consensus 665 L~~L~l~~N~l~~~~~ 680 (788)
|+.|++++|+++|..+
T Consensus 470 L~~L~l~~N~~~c~c~ 485 (520)
T 2z7x_B 470 LQKIWLHTNPWDCSCP 485 (520)
T ss_dssp CCEEECCSSCBCCCHH
T ss_pred ccEEECcCCCCcccCC
Confidence 7777777777766533
No 19
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=4.2e-43 Score=392.56 Aligned_cols=444 Identities=20% Similarity=0.203 Sum_probs=364.8
Q ss_pred CCccccCCCCCcEEEecCCCCCccCchHHhhcCCCCCEEEccCCcccCcCccCccCCCCcCEEEccCCcCcccCChhhhh
Q 003893 191 FPKFLYNQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDSLVGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGD 270 (788)
Q Consensus 191 ~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~ 270 (788)
+|..+. ++|++|++++|.+++..+.. +.++++|++|++++|.+++..+..+..+++|++|++++|.++ .+|..
T Consensus 15 ip~~~~--~~L~~L~Ls~n~i~~~~~~~-~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--- 87 (520)
T 2z7x_B 15 VPKDLS--QKTTILNISQNYISELWTSD-ILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KISCH--- 87 (520)
T ss_dssp CCCSCC--TTCSEEECCSSCCCCCCHHH-HTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC-EEECC---
T ss_pred cccccc--ccccEEECCCCcccccChhh-ccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee-ecCcc---
Confidence 444443 78999999999997665555 489999999999999999988889999999999999999998 67766
Q ss_pred cCCCCcEEEeeCCcCCC-CCCccccCCCCCCEEEccCCcCCCccchHHhhCCCCC--cEEEcccccc--CccccccccCC
Q 003893 271 ILSRLTVFNISMNALDG-SIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSL--RSLALSNNNL--EGHMFSRNFNL 345 (788)
Q Consensus 271 ~~~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L--~~L~l~~n~i--~~~~~~~~~~l 345 (788)
.+++|++|++++|.+++ ..|..++.+++|++|++++|.+++ ..+..+++| ++|++++|.+ .+..+..+..+
T Consensus 88 ~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~----~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l 163 (520)
T 2z7x_B 88 PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK----SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDF 163 (520)
T ss_dssp CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG----GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTC
T ss_pred ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch----hhccccccceeeEEEeeccccccccccccccccc
Confidence 48899999999999987 467899999999999999999973 223457788 9999999999 66666666555
Q ss_pred C-ccCceeccCccCcccCC-ccCCCCCCCcEEEcccCc-------CCCCCCccccCCCCccEEEccCCeeccCchhhhh-
Q 003893 346 T-NLIWLQLEGNHFVGEIP-QSLSKCSSLQGLFLSNNS-------LSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFC- 415 (788)
Q Consensus 346 ~-~L~~L~l~~n~~~~~~~-~~~~~l~~L~~L~l~~n~-------l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~- 415 (788)
. +...+++++|.+.+..+ ..+..+++|+.+++++|. +.+.++ .+..+++|+.|++++|.+.+..+..+.
T Consensus 164 ~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~l~~~~~~~~~~ 242 (520)
T 2z7x_B 164 NTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNPKLSNLTLNNIETTWNSFIRILQ 242 (520)
T ss_dssp CEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCTTCCEEEEEEEEEEHHHHHHHHH
T ss_pred ccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchh-hhccccchhhccccccccCHHHHHHHHH
Confidence 4 34467888888776444 467789999999999986 444444 678899999999999988754433222
Q ss_pred --cccCCcEEeccCCcCCCCCCCC------CCCCcccEEEccCcccccccCccccccc---ccccEEeCCCCccCCCCCc
Q 003893 416 --QLRILQILDISDNNISGSLPSC------YDFVCIEQVHLSKNMLHGQLKEGTFFNC---LTLMILDLSYNHLNGNIPD 484 (788)
Q Consensus 416 --~l~~L~~L~l~~n~~~~~~~~~------~~~~~L~~L~l~~n~~~~~~~~~~~~~~---~~L~~L~l~~n~i~~~~~~ 484 (788)
..++|++|++++|.+.+..|.. ..++.|+.+++++|.+ .+|...+..+ .+|+.|++++|.+....
T Consensus 243 ~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~-- 318 (520)
T 2z7x_B 243 LVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHML-- 318 (520)
T ss_dssp HHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCCCC--
T ss_pred HhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEEcCCCcccccc--
Confidence 2569999999999998777664 3488999999999988 5563344444 67999999999987432
Q ss_pred cccCCcCCcEEEccCccCcccCcccccCCCCCCEEEccCCcCCc--cCcccccccchhhhccCCCCCCCcccceeecCCc
Q 003893 485 RVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHG--HIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGM 562 (788)
Q Consensus 485 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 562 (788)
.+..+++|++|++++|++++..|..+..+++|++|++++|++++ ..|..+..++
T Consensus 319 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~------------------------ 374 (520)
T 2z7x_B 319 CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMK------------------------ 374 (520)
T ss_dssp CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCT------------------------
T ss_pred chhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCC------------------------
Confidence 23678999999999999998889999999999999999999986 3345555544
Q ss_pred ccCcccccccceEeeecCceecccCCccCCCceEECCCCcccccCcc-cccccccCCeEeCCCCCCCCCCCcccCCCCCC
Q 003893 563 DVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPP-QIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNI 641 (788)
Q Consensus 563 ~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 641 (788)
+|++|++++|.+++.+|. .+..+++|++|++++|++++..|..+. ++|
T Consensus 375 -----------------------------~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L 423 (520)
T 2z7x_B 375 -----------------------------SLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRI 423 (520)
T ss_dssp -----------------------------TCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTC
T ss_pred -----------------------------CCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccC
Confidence 899999999999984554 588999999999999999987777664 799
Q ss_pred CeeeCCCcccCccCchhhhcCCCCcEEecccCcCcccCCCCccccCCCCcCCcCCCCCCCCCCCC
Q 003893 642 ESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSGKIPERAAQFATFNESSYEGNPFLCGPPLP 706 (788)
Q Consensus 642 ~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~~~~~~Np~~C~~~~~ 706 (788)
++|++++|+++ .+|..+..+++|+.|++++|++++..+..+..+++++.+++.+||+.|+|+..
T Consensus 424 ~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~~~ 487 (520)
T 2z7x_B 424 KVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI 487 (520)
T ss_dssp CEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHHHH
T ss_pred CEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEECcCCCCcccCCch
Confidence 99999999999 78888889999999999999999655555788999999999999999999753
No 20
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=1.1e-42 Score=400.99 Aligned_cols=439 Identities=19% Similarity=0.235 Sum_probs=350.5
Q ss_pred CCCcEEEecCCCCCccCchHHhhcCCCCCEEEc-cCCcccCcCccC----------------------------------
Q 003893 199 HDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSL-VNDSLVGPFRLP---------------------------------- 243 (788)
Q Consensus 199 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l-~~~~~~~~~~~~---------------------------------- 243 (788)
.+++.|+|+++.+.|.+|..+ +++++|++|+| ++|.+.+..+..
T Consensus 323 ~~V~~L~Ls~~~L~G~ip~~l-~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s 401 (876)
T 4ecn_A 323 GRVTGLSLAGFGAKGRVPDAI-GQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLS 401 (876)
T ss_dssp SCEEEEECTTTCCEEEECGGG-GGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSC
T ss_pred CCEEEEECccCCCCCcCchHH-hccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhh
Confidence 468889999999888888775 78999999999 777665542111
Q ss_pred -----------------ccCCCCcCEEEcc--CCcCcccCChhhhhcCCCCcEEEeeCCcCCC-----------------
Q 003893 244 -----------------IHSHKQLRLLDVS--KNNFQGHIPLEIGDILSRLTVFNISMNALDG----------------- 287 (788)
Q Consensus 244 -----------------~~~~~~L~~L~l~--~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~----------------- 287 (788)
......++.+.+. .|.+++ +|..+.. +++|++|+|++|.+++
T Consensus 402 ~l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~-IP~~l~~-L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g 479 (876)
T 4ecn_A 402 DLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITF-ISKAIQR-LTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQ 479 (876)
T ss_dssp HHHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGG-CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHH
T ss_pred HHHHHHhhhCccccccccccccchhhceeccccCcccc-hhHHHhc-CCCCCEEECcCCcCCCCcccccccccccccccc
Confidence 0111223333333 367775 8887766 8899999999999997
Q ss_pred CCCcccc--CCCCCCEEEccCCcCCCccchHHhhCCCCCcEEEccccc-cCc-ccccccc-------CCCccCceeccCc
Q 003893 288 SIPSSFG--NMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNN-LEG-HMFSRNF-------NLTNLIWLQLEGN 356 (788)
Q Consensus 288 ~~~~~~~--~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~l~~n~-i~~-~~~~~~~-------~l~~L~~L~l~~n 356 (788)
.+|..++ ++++|++|++++|.+.+.+|..+. ++++|++|++++|+ +++ ..|..+. .+++|++|++++|
T Consensus 480 ~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~-~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N 558 (876)
T 4ecn_A 480 YENEELSWSNLKDLTDVELYNCPNMTQLPDFLY-DLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYN 558 (876)
T ss_dssp HTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGG-GCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSS
T ss_pred cCChhhhhccCCCCCEEECcCCCCCccChHHHh-CCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCC
Confidence 2788877 999999999999998888897665 69999999999998 876 5555444 4459999999999
Q ss_pred cCcccCCc--cCCCCCCCcEEEcccCcCCCCCCccccCCCCccEEEccCCeeccCchhhhhcccC-CcEEeccCCcCCCC
Q 003893 357 HFVGEIPQ--SLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRI-LQILDISDNNISGS 433 (788)
Q Consensus 357 ~~~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~-L~~L~l~~n~~~~~ 433 (788)
.+. .+|. .+..+++|+.|++++|.+. .+| .+..+++|+.|++++|.+. .+|..+..+++ |+.|++++|.+. .
T Consensus 559 ~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~ 633 (876)
T 4ecn_A 559 NLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-Y 633 (876)
T ss_dssp CCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-S
T ss_pred cCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-c
Confidence 998 7787 8999999999999999998 677 8899999999999999998 77888999998 999999999998 5
Q ss_pred CCCCCC-C--CcccEEEccCcccccccCcc--ccc--ccccccEEeCCCCccCCCCCccccCCcCCcEEEccCccCcccC
Q 003893 434 LPSCYD-F--VCIEQVHLSKNMLHGQLKEG--TFF--NCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEV 506 (788)
Q Consensus 434 ~~~~~~-~--~~L~~L~l~~n~~~~~~~~~--~~~--~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 506 (788)
+|..+. . ++|+.|++++|.+.+.++.. .+. .+++|++|++++|.++...+..+..+++|+.|++++|++. .+
T Consensus 634 lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~-~i 712 (876)
T 4ecn_A 634 IPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT-SI 712 (876)
T ss_dssp CCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCS-CC
T ss_pred CchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCC-cc
Confidence 555544 3 45999999999998766531 111 4458999999999999444344568999999999999998 45
Q ss_pred cccccC--------CCCCCEEEccCCcCCccCccccc--ccchhhhccCCCCCCCcccceeecCCcccCcccccccceEe
Q 003893 507 PIQLCR--------LNQLQLLDLSNNNLHGHIPSCFD--NTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDF 576 (788)
Q Consensus 507 ~~~~~~--------l~~L~~L~L~~n~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 576 (788)
|..+.. +++|++|+|++|+++ .+|..+. .++
T Consensus 713 p~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~-------------------------------------- 753 (876)
T 4ecn_A 713 PENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLP-------------------------------------- 753 (876)
T ss_dssp CTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCT--------------------------------------
T ss_pred ChHHhccccccccccCCccEEECCCCCCc-cchHHhhhccCC--------------------------------------
Confidence 544332 238999999999998 4454443 333
Q ss_pred eecCceecccCCccCCCceEECCCCcccccCcccccccccCCeEeCCC------CCCCCCCCcccCCCCCCCeeeCCCcc
Q 003893 577 TTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSH------NNLAGPIPSTFSNLRNIESLDLSYNK 650 (788)
Q Consensus 577 ~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~------N~l~~~~~~~~~~l~~L~~L~Ls~N~ 650 (788)
+|+.|+|++|.+++ +|..+..+++|+.|+|++ |++.+.+|..|..+++|++|+|++|+
T Consensus 754 ---------------~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~ 817 (876)
T 4ecn_A 754 ---------------YLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSND 817 (876)
T ss_dssp ---------------TCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSC
T ss_pred ---------------CcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCC
Confidence 89999999999997 788899999999999976 88888999999999999999999999
Q ss_pred cCccCchhhhcCCCCcEEecccCcCcccCCCCccccCCCCcCCcCCCCCCC--CCCC
Q 003893 651 LSWKIPYQLVELNTLAVFSVAYNNLSGKIPERAAQFATFNESSYEGNPFLC--GPPL 705 (788)
Q Consensus 651 l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~~~~~~Np~~C--~~~~ 705 (788)
+ +.+|..+. ++|+.||+++|++....+..++.........+.+|++.| +|+.
T Consensus 818 L-~~Ip~~l~--~~L~~LdLs~N~l~~i~~~~~~~~~~~~~~~L~~n~~~~I~gC~~ 871 (876)
T 4ecn_A 818 I-RKVDEKLT--PQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQDIRGCDA 871 (876)
T ss_dssp C-CBCCSCCC--SSSCEEECCSCTTCEEECGGGHHHHHTTCCEEECCTTSEEESCGG
T ss_pred C-CccCHhhc--CCCCEEECCCCCCCccChHHccccccchheeecCCCccccCCCCC
Confidence 9 57888765 699999999999998887777776667777888888776 7763
No 21
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=2.9e-42 Score=397.42 Aligned_cols=392 Identities=17% Similarity=0.216 Sum_probs=249.6
Q ss_pred cCCccCCccccCCCCCcEEEecCCCCCc-----------------cCchHH-hhcCCCCCEEEccCCcccCcCccCccCC
Q 003893 186 RDGITFPKFLYNQHDLEYVRLSHIKMNE-----------------EFPNWL-LENNTKLRQLSLVNDSLVGPFRLPIHSH 247 (788)
Q Consensus 186 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~-----------------~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~~ 247 (788)
.+.+ +|..+.++++|++|++++|.+++ .+|..+ +.++++|++|++++|.+.+..+..+..+
T Consensus 436 ~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L 514 (876)
T 4ecn_A 436 RITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDL 514 (876)
T ss_dssp EEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGC
T ss_pred cccc-hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCC
Confidence 3344 67777778888888888888776 255554 2367777777777777766666667777
Q ss_pred CCcCEEEccCCc-Ccc-cCChhhhhc------CCCCcEEEeeCCcCCCCCCc--cccCCCCCCEEEccCCcCCCccchHH
Q 003893 248 KQLRLLDVSKNN-FQG-HIPLEIGDI------LSRLTVFNISMNALDGSIPS--SFGNMNFLQFLDLSNNQLTGEIPEHL 317 (788)
Q Consensus 248 ~~L~~L~l~~n~-l~~-~~~~~~~~~------~~~L~~L~L~~n~l~~~~~~--~~~~l~~L~~L~L~~n~i~~~~~~~~ 317 (788)
++|+.|++++|. +++ .+|..+... +++|++|++++|.+. .+|. .+..+++|+.|++++|.++ .+| .
T Consensus 515 ~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp--~ 590 (876)
T 4ecn_A 515 PELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE--A 590 (876)
T ss_dssp SSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC--C
T ss_pred CCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch--h
Confidence 777777777776 665 566555431 236677777776666 5555 6666666777777766666 666 3
Q ss_pred hhCCCCCcEEEccccccCccccccccCCCc-cCceeccCccCcccCCccCCCCCC--CcEEEcccCcCCCCCCccc---c
Q 003893 318 AMGCVSLRSLALSNNNLEGHMFSRNFNLTN-LIWLQLEGNHFVGEIPQSLSKCSS--LQGLFLSNNSLSGKIPRWL---G 391 (788)
Q Consensus 318 ~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~-L~~L~l~~n~~~~~~~~~~~~l~~--L~~L~l~~n~l~~~~~~~l---~ 391 (788)
+..+++|++|++++|.+. ..+..+.++++ |++|++++|.+. .+|..+..++. |+.|++++|.+.+.+|... .
T Consensus 591 ~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~ 668 (876)
T 4ecn_A 591 FGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMD 668 (876)
T ss_dssp CCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTT
T ss_pred hcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhc
Confidence 345666666666666666 44445556666 666666666666 45555554433 6666666666655443211 1
Q ss_pred --CCCCccEEEccCCeeccCchhhhhcccCCcEEeccCCcCCCCCCCCCCCCcccEEEccCcccccccCccccccccccc
Q 003893 392 --NLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLM 469 (788)
Q Consensus 392 --~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~ 469 (788)
.+++|+.|++++|.+....+..+..+++|+.|++++|.+.......+.. ....+.++++|+
T Consensus 669 ~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~-----------------~~~~l~nl~~L~ 731 (876)
T 4ecn_A 669 DYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKP-----------------KDGNYKNTYLLT 731 (876)
T ss_dssp TCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSC-----------------TTSCCTTGGGCC
T ss_pred cccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccChHHhcc-----------------ccccccccCCcc
Confidence 2235666666666665333333445566666666666554221111100 000122344666
Q ss_pred EEeCCCCccCCCCCcccc--CCcCCcEEEccCccCcccCcccccCCCCCCEEEccCCcCCccCcccccccchhhhccCCC
Q 003893 470 ILDLSYNHLNGNIPDRVD--GLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHERYNNGS 547 (788)
Q Consensus 470 ~L~l~~n~i~~~~~~~~~--~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~ 547 (788)
+|++++|+++ .+|..+. .+++|+.|+|++|++++ +|..+..+++|+.|++++|+
T Consensus 732 ~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~---------------------- 787 (876)
T 4ecn_A 732 TIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQR---------------------- 787 (876)
T ss_dssp EEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCB----------------------
T ss_pred EEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCC----------------------
Confidence 6666666666 4555554 56666666666666664 45556666666666666653
Q ss_pred CCCCcccceeecCCcccCcccccccceEeeecCceecccCCccCCCceEECCCCcccccCcccccccccCCeEeCCCCCC
Q 003893 548 SLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNL 627 (788)
Q Consensus 548 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l 627 (788)
++++|.+.+.+|..+..+++|+.|+|++|++
T Consensus 788 -------------------------------------------------~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L 818 (876)
T 4ecn_A 788 -------------------------------------------------DAEGNRILRQWPTGITTCPSLIQLQIGSNDI 818 (876)
T ss_dssp -------------------------------------------------CTTCCBCCCCCCTTGGGCSSCCEEECCSSCC
T ss_pred -------------------------------------------------CcccccccccChHHHhcCCCCCEEECCCCCC
Confidence 2345788888999999999999999999999
Q ss_pred CCCCCcccCCCCCCCeeeCCCcccCccCchhhhcCCCCcEEecccCcCcc
Q 003893 628 AGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSG 677 (788)
Q Consensus 628 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~ 677 (788)
+.+|..+. ++|+.|||++|++....+..+.....+..+.+.+|++..
T Consensus 819 -~~Ip~~l~--~~L~~LdLs~N~l~~i~~~~~~~~~~~~~~~L~~n~~~~ 865 (876)
T 4ecn_A 819 -RKVDEKLT--PQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQD 865 (876)
T ss_dssp -CBCCSCCC--SSSCEEECCSCTTCEEECGGGHHHHHTTCCEEECCTTSE
T ss_pred -CccCHhhc--CCCCEEECCCCCCCccChHHccccccchheeecCCCccc
Confidence 46777765 699999999999987777777666667777788887654
No 22
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=1.3e-42 Score=395.23 Aligned_cols=415 Identities=20% Similarity=0.243 Sum_probs=261.2
Q ss_pred CCCcEEEecCCCCCccCchHHhhcCCCCCEEEccCCcccCcC---------------------------------ccCc-
Q 003893 199 HDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDSLVGPF---------------------------------RLPI- 244 (788)
Q Consensus 199 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~---------------------------------~~~~- 244 (788)
.+++.|+++++.+.|.+|..+ +++++|++|++++|.+.... +..+
T Consensus 81 ~~V~~L~L~~~~l~g~lp~~l-~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~ 159 (636)
T 4eco_A 81 GRVTGLSLEGFGASGRVPDAI-GQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFS 159 (636)
T ss_dssp CCEEEEECTTSCCEEEECGGG-GGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSC
T ss_pred CCEEEEEecCcccCCcCChHH-hcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHH
Confidence 479999999999999999875 89999999999999652110 0000
Q ss_pred ------------------cCCCCcCEEEcc--CCcCcccCChhhhhcCCCCcEEEeeCCcCCCC----------------
Q 003893 245 ------------------HSHKQLRLLDVS--KNNFQGHIPLEIGDILSRLTVFNISMNALDGS---------------- 288 (788)
Q Consensus 245 ------------------~~~~~L~~L~l~--~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~---------------- 288 (788)
.....++.+.+. .|.+++ +|..+.. +++|++|++++|.+++.
T Consensus 160 ~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~-ip~~l~~-l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~ 237 (636)
T 4eco_A 160 DLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMR-LTKLRQFYMGNSPFVAENICEAWENENSEYAQQ 237 (636)
T ss_dssp HHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGG-CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHH
T ss_pred HHHHHHhhcCccccccccccccchhhhhhccccCCCcc-CCHHHhc-ccCCCEEECcCCccccccccccccccccchhcc
Confidence 001112222222 456665 7776655 67788888888877764
Q ss_pred -CCcccc--CCCCCCEEEccCCcCCCccchHHhhCCCCCcEEEccccc-cCc-cccccccCC------CccCceeccCcc
Q 003893 289 -IPSSFG--NMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNN-LEG-HMFSRNFNL------TNLIWLQLEGNH 357 (788)
Q Consensus 289 -~~~~~~--~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~l~~n~-i~~-~~~~~~~~l------~~L~~L~l~~n~ 357 (788)
+|..++ ++++|++|++++|.+.+.+|..+. ++++|++|++++|+ +++ ..|..+..+ ++|++|++++|.
T Consensus 238 ~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~-~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~ 316 (636)
T 4eco_A 238 YKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLK-ALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNN 316 (636)
T ss_dssp HTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTT-TCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSC
T ss_pred cCchhhhhcccCCCCEEEecCCcCCccChHHHh-cCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCc
Confidence 677777 778888888888877777776554 57778888888877 766 555555554 778888888887
Q ss_pred CcccCCc--cCCCCCCCcEEEcccCcCCCCCCccccCCCCccEEEccCCeeccCchhhhhcccC-CcEEeccCCcCCCCC
Q 003893 358 FVGEIPQ--SLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRI-LQILDISDNNISGSL 434 (788)
Q Consensus 358 ~~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~-L~~L~l~~n~~~~~~ 434 (788)
+. .+|. .+..+++|++|++++|.+.+.+| .+..+++|++|++++|.+. .+|..+..+++ |++|++++|.++ .+
T Consensus 317 l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~l 392 (636)
T 4eco_A 317 LK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YI 392 (636)
T ss_dssp CS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SC
T ss_pred CC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-cc
Confidence 77 6666 67777788888888887776666 6777777888888877777 56666777777 788888777776 34
Q ss_pred CCCCC---CCcccEEEccCcccccccCccccc-------ccccccEEeCCCCccCCCCCccccCCcCCcEEEccCccCcc
Q 003893 435 PSCYD---FVCIEQVHLSKNMLHGQLKEGTFF-------NCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEG 504 (788)
Q Consensus 435 ~~~~~---~~~L~~L~l~~n~~~~~~~~~~~~-------~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~ 504 (788)
|..+. +++|+.|++++|.+.+..|. .+. .+++|++|++++|.++...+..+..+++|++|++++|+++.
T Consensus 393 p~~~~~~~l~~L~~L~Ls~N~l~~~~p~-~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~ 471 (636)
T 4eco_A 393 PNIFDAKSVSVMSAIDFSYNEIGSVDGK-NFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTE 471 (636)
T ss_dssp CSCCCTTCSSCEEEEECCSSCTTTTTTC-SSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSB
T ss_pred chhhhhcccCccCEEECcCCcCCCcchh-hhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCC
Confidence 43332 23566666666666554443 343 44566666666666663333334455666666666666652
Q ss_pred cCcccccCCC-------CCCEEEccCCcCCccCccccc--ccchhhhccCCCCCCCcccceeecCCcccCcccccccceE
Q 003893 505 EVPIQLCRLN-------QLQLLDLSNNNLHGHIPSCFD--NTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFD 575 (788)
Q Consensus 505 ~~~~~~~~l~-------~L~~L~L~~n~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 575 (788)
..+..+.... +|++|++++|+++. +|..+. .++
T Consensus 472 i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-lp~~~~~~~l~------------------------------------- 513 (636)
T 4eco_A 472 IPKNSLKDENENFKNTYLLTSIDLRFNKLTK-LSDDFRATTLP------------------------------------- 513 (636)
T ss_dssp CCSSSSEETTEECTTGGGCCEEECCSSCCCB-CCGGGSTTTCT-------------------------------------
T ss_pred cCHHHhccccccccccCCccEEECcCCcCCc-cChhhhhccCC-------------------------------------
Confidence 2222222221 56666666666652 332222 222
Q ss_pred eeecCceecccCCccCCCceEECCCCcccccCcccccccccCCeEeC------CCCCCCCCCCcccCCCCCCCeeeCCCc
Q 003893 576 FTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNL------SHNNLAGPIPSTFSNLRNIESLDLSYN 649 (788)
Q Consensus 576 ~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L------s~N~l~~~~~~~~~~l~~L~~L~Ls~N 649 (788)
+|+.|++++|++++ +|..+..+++|+.|+| ++|++.+.+|..+..+++|++|++++|
T Consensus 514 ----------------~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N 576 (636)
T 4eco_A 514 ----------------YLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSN 576 (636)
T ss_dssp ----------------TCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSS
T ss_pred ----------------CcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCC
Confidence 56666666666664 5555666666666666 345555556666666666666666666
Q ss_pred ccCccCchhhhcCCCCcEEecccCcCcccCC
Q 003893 650 KLSWKIPYQLVELNTLAVFSVAYNNLSGKIP 680 (788)
Q Consensus 650 ~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~ 680 (788)
+++ .+|..+. ++|+.|++++|++.+...
T Consensus 577 ~l~-~ip~~~~--~~L~~L~Ls~N~l~~~~~ 604 (636)
T 4eco_A 577 DIR-KVNEKIT--PNISVLDIKDNPNISIDL 604 (636)
T ss_dssp CCC-BCCSCCC--TTCCEEECCSCTTCEEEC
T ss_pred cCC-ccCHhHh--CcCCEEECcCCCCccccH
Confidence 663 4555443 566666666666554433
No 23
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=6.3e-40 Score=369.61 Aligned_cols=463 Identities=19% Similarity=0.153 Sum_probs=283.3
Q ss_pred CCCCCEEeCCCCCCCCcccCCCCccCCCCCCCEEEcCCCCCCCCccHhhhcCCCCCEEeCCCCcCcCCCChhhhcCCCCC
Q 003893 45 MPSIQYLSLSNSSVSNNSRTLDQGLCPLVHLQELHMADNDLRGSLPWCLANMTSLRILDVSSNQLIGSISSSPLIHLTSI 124 (788)
Q Consensus 45 l~~L~~L~L~~~~l~~~~~~l~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L 124 (788)
+...+++++++++++.. | ..+. ++|++|++++|.+++..|..|.++++|++|++++|.+++..|. .|.++++|
T Consensus 30 ~~~~~~l~ls~~~L~~i-p---~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~~l~~L 102 (562)
T 3a79_B 30 NELESMVDYSNRNLTHV-P---KDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFH-VFLFNQDL 102 (562)
T ss_dssp ---CCEEECTTSCCCSC-C---TTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTT-TTTTCTTC
T ss_pred cCCCcEEEcCCCCCccC-C---CCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHH-HhCCCCCC
Confidence 44557788887777542 2 3332 6777888888877776667777777788888877777744344 67777777
Q ss_pred CEEEcCCCcccCccCccccCCCCCccEEEccCCccchhhhccccCCCCcccccEEEccCCCcCCccCCccccCCCCCcEE
Q 003893 125 EDLILSDNHFQIPISLEPLFNHSRLKIFDAENNEINAEIIESHSLTTPNFQLQSLLLSSGYRDGITFPKFLYNQHDLEYV 204 (788)
Q Consensus 125 ~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L 204 (788)
++|++++|.++ .++.. .+++| ++|
T Consensus 103 ~~L~Ls~N~l~-~lp~~---~l~~L----------------------------------------------------~~L 126 (562)
T 3a79_B 103 EYLDVSHNRLQ-NISCC---PMASL----------------------------------------------------RHL 126 (562)
T ss_dssp CEEECTTSCCC-EECSC---CCTTC----------------------------------------------------SEE
T ss_pred CEEECCCCcCC-ccCcc---ccccC----------------------------------------------------CEE
Confidence 77777777765 23311 34444 444
Q ss_pred EecCCCCCc-cCchHHhhcCCCCCEEEccCCcccCcCccCccCCCCc--CEEEccCCcC--cccCChhhhhcCC-CCcEE
Q 003893 205 RLSHIKMNE-EFPNWLLENNTKLRQLSLVNDSLVGPFRLPIHSHKQL--RLLDVSKNNF--QGHIPLEIGDILS-RLTVF 278 (788)
Q Consensus 205 ~l~~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L--~~L~l~~n~l--~~~~~~~~~~~~~-~L~~L 278 (788)
++++|.+++ ..|.. ++++++|++|++++|.+.+.. +..++.| ++|++++|.+ ++..|..+.. +. ..-.+
T Consensus 127 ~Ls~N~l~~l~~p~~-~~~l~~L~~L~L~~n~l~~~~---~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~-l~~~~l~l 201 (562)
T 3a79_B 127 DLSFNDFDVLPVCKE-FGNLTKLTFLGLSAAKFRQLD---LLPVAHLHLSCILLDLVSYHIKGGETESLQI-PNTTVLHL 201 (562)
T ss_dssp ECCSSCCSBCCCCGG-GGGCTTCCEEEEECSBCCTTT---TGGGTTSCEEEEEEEESSCCCCSSSCCEEEE-CCEEEEEE
T ss_pred ECCCCCccccCchHh-hcccCcccEEecCCCccccCc---hhhhhhceeeEEEeecccccccccCcccccc-cCcceEEE
Confidence 444444433 22333 468888888888888876533 3333444 7777777776 5455544332 11 11244
Q ss_pred EeeCCcCCCCCCc-cccCCCCCCEEEccCCcCCC-ccch--HHhhCCCCCcEEEccccccCccccccccCCCccCceecc
Q 003893 279 NISMNALDGSIPS-SFGNMNFLQFLDLSNNQLTG-EIPE--HLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLE 354 (788)
Q Consensus 279 ~L~~n~l~~~~~~-~~~~l~~L~~L~L~~n~i~~-~~~~--~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~ 354 (788)
++++|.+.+..+. .+..+++|+.+++++|.... .++. ..+.++++|+.++++++.+.+...
T Consensus 202 ~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~--------------- 266 (562)
T 3a79_B 202 VFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCS--------------- 266 (562)
T ss_dssp EECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHH---------------
T ss_pred EecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHH---------------
Confidence 5666665543332 34566667777776664210 0111 112345566666665554432111
Q ss_pred CccCcccCCccCCCCCCCcEEEcccCcCCCCCCccc-----cCCCCccEEEccCCeeccCchhhhhc---ccCCcEEecc
Q 003893 355 GNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWL-----GNLTVLRHIIMPKNHIEGPIPLEFCQ---LRILQILDIS 426 (788)
Q Consensus 355 ~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l-----~~l~~L~~L~l~~n~~~~~~~~~~~~---l~~L~~L~l~ 426 (788)
.+. +.. ...++|++|++++|.+.+.+|..+ ..++.|+.+++..+.+ ......+.. ..+|+.|+++
T Consensus 267 ----~~~-~~~-~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~-~~p~~~~~~~~~~~~L~~L~l~ 339 (562)
T 3a79_B 267 ----VKL-FQF-FWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF-LFSKEALYSVFAEMNIKMLSIS 339 (562)
T ss_dssp ----HHH-HHH-HTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC-SSCHHHHHHHHHTCCCSEEEEE
T ss_pred ----HHH-HHh-hhcccccEEEEeccEeeccccchhhhcccccchheehhhccccee-ecChhhhhhhhccCcceEEEcc
Confidence 000 000 112255555555555555555444 4444555555555544 121122222 2567777777
Q ss_pred CCcCCCCCCCCCCCCcccEEEccCcccccccCcccccccccccEEeCCCCccCCCCCccccCCcCCcEEEccCccCccc-
Q 003893 427 DNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGE- 505 (788)
Q Consensus 427 ~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~- 505 (788)
+|.+... . ....+++|++|++++|.+++..|..+..+++|++|++++|++++.
T Consensus 340 ~n~~~~~------------------------~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 393 (562)
T 3a79_B 340 DTPFIHM------------------------V--CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFF 393 (562)
T ss_dssp SSCCCCC------------------------C--CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTT
T ss_pred CCCcccc------------------------c--CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcc
Confidence 7765411 0 124677888888888888877788888888888888888888753
Q ss_pred -CcccccCCCCCCEEEccCCcCCccCc-ccccccchhhhccCCCCCCCcccceeecCCcccCcccccccceEeeecCcee
Q 003893 506 -VPIQLCRLNQLQLLDLSNNNLHGHIP-SCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITY 583 (788)
Q Consensus 506 -~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~ 583 (788)
.|..+..+++|++|++++|++++.+| ..+..+.
T Consensus 394 ~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~--------------------------------------------- 428 (562)
T 3a79_B 394 KVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAE--------------------------------------------- 428 (562)
T ss_dssp HHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCT---------------------------------------------
T ss_pred cchhhhcCCCCCCEEECCCCcCCCccChhhhcCcc---------------------------------------------
Confidence 24567888888888888888876333 3343332
Q ss_pred cccCCccCCCceEECCCCcccccCcccccccccCCeEeCCCCCCCCCCCcccCCCCCCCeeeCCCcccCccCchh-hhcC
Q 003893 584 TYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQ-LVEL 662 (788)
Q Consensus 584 ~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~-l~~l 662 (788)
+|++|++++|++++..|..+. ++|+.|+|++|+++ .+|..+..+++|++|++++|+++. +|.. +..+
T Consensus 429 --------~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~l 496 (562)
T 3a79_B 429 --------SILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKS-VPDGVFDRL 496 (562)
T ss_dssp --------TCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCCC-CCTTSTTTC
T ss_pred --------cCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCCC-CCHHHHhcC
Confidence 788888888888766665544 68888888888888 455555588888888888888884 4444 7788
Q ss_pred CCCcEEecccCcCcccCC
Q 003893 663 NTLAVFSVAYNNLSGKIP 680 (788)
Q Consensus 663 ~~L~~L~l~~N~l~~~~~ 680 (788)
++|+.|++++|+++|..+
T Consensus 497 ~~L~~L~l~~N~~~c~c~ 514 (562)
T 3a79_B 497 TSLQYIWLHDNPWDCTCP 514 (562)
T ss_dssp TTCCCEECCSCCBCCCHH
T ss_pred CCCCEEEecCCCcCCCcc
Confidence 888888888888887654
No 24
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=5.2e-39 Score=353.21 Aligned_cols=371 Identities=20% Similarity=0.198 Sum_probs=234.2
Q ss_pred CEEEccCCcCcccCChhhhhcCCCCcEEEeeCCcCCCCCCccccCCCCCCEEEccCCcCCCccchHHhhCCCCCcEEEcc
Q 003893 251 RLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALS 330 (788)
Q Consensus 251 ~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~l~ 330 (788)
+.++.++++++ .+|. + .++|++|++++|.+++..|..|.++++|++|++++|.+.+.++...+.++++|++|+++
T Consensus 13 ~~~~c~~~~l~-~lp~-l---~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls 87 (455)
T 3v47_A 13 YNAICINRGLH-QVPE-L---PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLD 87 (455)
T ss_dssp TEEECCSSCCS-SCCC-C---CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECT
T ss_pred cccCcCCCCcc-cCCC-C---CCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCC
Confidence 35666777776 6665 2 36888888888888877788888888888888888888767776666778888888888
Q ss_pred ccccCccccccccCCCccCceeccCccCcccCCc--cCCCCCCCcEEEcccCcCCCCCCcc-ccCCCCccEEEccCCeec
Q 003893 331 NNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQ--SLSKCSSLQGLFLSNNSLSGKIPRW-LGNLTVLRHIIMPKNHIE 407 (788)
Q Consensus 331 ~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~-l~~l~~L~~L~l~~n~~~ 407 (788)
+|.+++..+..+.++++|++|++++|.+.+..+. .+..+++|++|++++|.+.+..|.. +..+++|++|++++|.+.
T Consensus 88 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~ 167 (455)
T 3v47_A 88 YNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVK 167 (455)
T ss_dssp TCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBS
T ss_pred CCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCccc
Confidence 8888887778888888888888888888764333 3788888888888888888776665 778888888888888888
Q ss_pred cCchhhhhcc--cCCcEEeccCCcCCCCCCCC---------CCCCcccEEEccCcccccccCcccccc---cccccEEeC
Q 003893 408 GPIPLEFCQL--RILQILDISDNNISGSLPSC---------YDFVCIEQVHLSKNMLHGQLKEGTFFN---CLTLMILDL 473 (788)
Q Consensus 408 ~~~~~~~~~l--~~L~~L~l~~n~~~~~~~~~---------~~~~~L~~L~l~~n~~~~~~~~~~~~~---~~~L~~L~l 473 (788)
+..+..+..+ .+|+.|++++|.+.+..+.. +.+++|++|++++|.+.+..+. .+.. .++|+.|++
T Consensus 168 ~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~-~~~~~~~~~~L~~L~l 246 (455)
T 3v47_A 168 SICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAK-RFFDAIAGTKIQSLIL 246 (455)
T ss_dssp CCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHH-HHHHHTTTCCEEEEEC
T ss_pred ccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchh-hhhccccccceeeEee
Confidence 7777777665 67888888888877554432 2345677777777766655444 3322 256777777
Q ss_pred CCCccCCCC----------CccccC--CcCCcEEEccCccCcccCcccccCCCCCCEEEccCCcCCccCcccccccchhh
Q 003893 474 SYNHLNGNI----------PDRVDG--LSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHE 541 (788)
Q Consensus 474 ~~n~i~~~~----------~~~~~~--l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~ 541 (788)
++|...+.. +..+.+ .++|+.|++++|.+.+..|..+..+++|++|++++|++.+..|..+..+.
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~--- 323 (455)
T 3v47_A 247 SNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLT--- 323 (455)
T ss_dssp TTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCT---
T ss_pred ccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcc---
Confidence 766543221 111111 13455555555555544444455555555555555555444444433332
Q ss_pred hccCCCCCCCcccceeecCCcccCcccccccceEeeecCceecccCCccCCCceEECCCCcccccCcccccccccCCeEe
Q 003893 542 RYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLN 621 (788)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 621 (788)
+|++|++++|.+++..|..|..+++|++|+
T Consensus 324 --------------------------------------------------~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 353 (455)
T 3v47_A 324 --------------------------------------------------HLLKLNLSQNFLGSIDSRMFENLDKLEVLD 353 (455)
T ss_dssp --------------------------------------------------TCCEEECCSSCCCEECGGGGTTCTTCCEEE
T ss_pred --------------------------------------------------cCCEEECCCCccCCcChhHhcCcccCCEEE
Confidence 444555555555444444444455555555
Q ss_pred CCCCCCCCCCCcccCCCCCCCeeeCCCcccCccCchhhhcCCCCcEEecccCcCcccCC
Q 003893 622 LSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSGKIP 680 (788)
Q Consensus 622 Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~ 680 (788)
|++|++++..|..|..+++|++|++++|++++..+..+..+++|+.|++++|++++.+|
T Consensus 354 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 354 LSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp CCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred CCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence 55555544444444445555555555555544333344444455555555555544444
No 25
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=7.4e-40 Score=369.08 Aligned_cols=437 Identities=21% Similarity=0.194 Sum_probs=325.8
Q ss_pred CCCCcEEEecCCCCCccCchHHhhcCCCCCEEEccCCcccCcCccCccCCCCcCEEEccCCcCcccCChhhhhcCCCCcE
Q 003893 198 QHDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDSLVGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLTV 277 (788)
Q Consensus 198 ~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~ 277 (788)
+...++++++++.+++ +|..+ .++|++|++++|.+++..+..+..+++|++|++++|.+++..|..+.. +++|++
T Consensus 30 ~~~~~~l~ls~~~L~~-ip~~~---~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~-l~~L~~ 104 (562)
T 3a79_B 30 NELESMVDYSNRNLTH-VPKDL---PPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLF-NQDLEY 104 (562)
T ss_dssp ---CCEEECTTSCCCS-CCTTS---CTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTT-CTTCCE
T ss_pred cCCCcEEEcCCCCCcc-CCCCC---CCCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCC-CCCCCE
Confidence 4455889999998864 66543 378999999999998888888889999999999999988554554444 789999
Q ss_pred EEeeCCcCCCCCCccccCCCCCCEEEccCCcCCCccch-HHhhCCCCCcEEEccccccCccccccccCCCcc--Cceecc
Q 003893 278 FNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPE-HLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNL--IWLQLE 354 (788)
Q Consensus 278 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~-~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L--~~L~l~ 354 (788)
|++++|.++ .+|.. .+++|++|++++|.++ .++. ..+.++++|++|++++|.+... .+..+++| ++|+++
T Consensus 105 L~Ls~N~l~-~lp~~--~l~~L~~L~Ls~N~l~-~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~ 177 (562)
T 3a79_B 105 LDVSHNRLQ-NISCC--PMASLRHLDLSFNDFD-VLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLD 177 (562)
T ss_dssp EECTTSCCC-EECSC--CCTTCSEEECCSSCCS-BCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEE
T ss_pred EECCCCcCC-ccCcc--ccccCCEEECCCCCcc-ccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEee
Confidence 999999988 45554 7899999999999988 5442 3445689999999999988763 34445555 999999
Q ss_pred CccC--cccCCccCCCCC--CCcEEEcccCcCCCCCCc-cccCCCCccEEEccCCeec----cCchhhhhcccCCcEEec
Q 003893 355 GNHF--VGEIPQSLSKCS--SLQGLFLSNNSLSGKIPR-WLGNLTVLRHIIMPKNHIE----GPIPLEFCQLRILQILDI 425 (788)
Q Consensus 355 ~n~~--~~~~~~~~~~l~--~L~~L~l~~n~l~~~~~~-~l~~l~~L~~L~l~~n~~~----~~~~~~~~~l~~L~~L~l 425 (788)
+|.+ .+..+..+..+. .+ .++++.|.+.+..+. .+..+++|+.+++++|... ......+..++.|+.+++
T Consensus 178 ~n~l~~~~~~~~~l~~l~~~~l-~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L 256 (562)
T 3a79_B 178 LVSYHIKGGETESLQIPNTTVL-HLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTL 256 (562)
T ss_dssp ESSCCCCSSSCCEEEECCEEEE-EEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEE
T ss_pred cccccccccCcccccccCcceE-EEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEe
Confidence 9988 767777776654 23 557778877665443 4567889999999988511 122345778889999998
Q ss_pred cCCcCCCCC----CCCCCCCcccEEEccCcccccccCcccc----cccc--------------------------cccEE
Q 003893 426 SDNNISGSL----PSCYDFVCIEQVHLSKNMLHGQLKEGTF----FNCL--------------------------TLMIL 471 (788)
Q Consensus 426 ~~n~~~~~~----~~~~~~~~L~~L~l~~n~~~~~~~~~~~----~~~~--------------------------~L~~L 471 (788)
+++.+.+.. +.....++|++|++++|.+.+.+|...| ..++ +|++|
T Consensus 257 ~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L 336 (562)
T 3a79_B 257 QHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKML 336 (562)
T ss_dssp EEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEE
T ss_pred cCCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEE
Confidence 887665321 1122345899999999999887776432 2333 35566
Q ss_pred eCCCCccCCCCCccccCCcCCcEEEccCccCcccCcccccCCCCCCEEEccCCcCCccC--cccccccchhhhccCCCCC
Q 003893 472 DLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHI--PSCFDNTTLHERYNNGSSL 549 (788)
Q Consensus 472 ~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~--~~~~~~~~~~~~~~~~~~~ 549 (788)
++++|.+.... ....+++|++|++++|.+++..|..+..+++|++|++++|++++.. |..+..++
T Consensus 337 ~l~~n~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~----------- 403 (562)
T 3a79_B 337 SISDTPFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMS----------- 403 (562)
T ss_dssp EEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCT-----------
T ss_pred EccCCCccccc--CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCC-----------
Confidence 66666554221 1256677777777777777667777777777777777777776543 23333333
Q ss_pred CCcccceeecCCcccCcccccccceEeeecCceecccCCccCCCceEECCCCcccccCc-ccccccccCCeEeCCCCCCC
Q 003893 550 QPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIP-PQIGNLTKIQTLNLSHNNLA 628 (788)
Q Consensus 550 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~Ls~N~l~ 628 (788)
+|++|++++|.+++.+| ..+..+++|++|++++|+++
T Consensus 404 ------------------------------------------~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~ 441 (562)
T 3a79_B 404 ------------------------------------------SLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLT 441 (562)
T ss_dssp ------------------------------------------TCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCC
T ss_pred ------------------------------------------CCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCC
Confidence 89999999999998444 45889999999999999998
Q ss_pred CCCCcccCCCCCCCeeeCCCcccCccCchhhhcCCCCcEEecccCcCcccCCCCccccCCCCcCCcCCCCCCCCCCC
Q 003893 629 GPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSGKIPERAAQFATFNESSYEGNPFLCGPPL 705 (788)
Q Consensus 629 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~~~~~~Np~~C~~~~ 705 (788)
+..|..+. ++|++|++++|+++ .+|..+..+++|+.|++++|++++..+..+..++.++.+++++|||.|+|+.
T Consensus 442 ~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~~ 515 (562)
T 3a79_B 442 GSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPG 515 (562)
T ss_dssp GGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSCCBCCCHHH
T ss_pred cchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCCCcCCCcch
Confidence 77666554 79999999999999 6777777999999999999999965555488999999999999999999874
No 26
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=9.2e-38 Score=343.31 Aligned_cols=382 Identities=20% Similarity=0.190 Sum_probs=309.1
Q ss_pred EEEecCCCCCccCchHHhhcCCCCCEEEccCCcccCcCccCccCCCCcCEEEccCCcCcccCChhhhhcCCCCcEEEeeC
Q 003893 203 YVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDSLVGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISM 282 (788)
Q Consensus 203 ~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~ 282 (788)
.++.+++.++ .+|. -.++|++|++++|.+++..+..+..+++|++|++++|.+.+.++...+..+++|++|++++
T Consensus 14 ~~~c~~~~l~-~lp~----l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~ 88 (455)
T 3v47_A 14 NAICINRGLH-QVPE----LPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDY 88 (455)
T ss_dssp EEECCSSCCS-SCCC----CCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTT
T ss_pred ccCcCCCCcc-cCCC----CCCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCC
Confidence 4555555553 3443 1267888888888888877778888888999999888887666655555588899999999
Q ss_pred CcCCCCCCccccCCCCCCEEEccCCcCCCccchH-HhhCCCCCcEEEccccccCcccccc-ccCCCccCceeccCccCcc
Q 003893 283 NALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEH-LAMGCVSLRSLALSNNNLEGHMFSR-NFNLTNLIWLQLEGNHFVG 360 (788)
Q Consensus 283 n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~-~~~~l~~L~~L~l~~n~i~~~~~~~-~~~l~~L~~L~l~~n~~~~ 360 (788)
|.+.+..|..|.++++|++|++++|.+++.++.. .+..+++|++|++++|.+.+..+.. +.++++|++|++++|.+.+
T Consensus 89 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~ 168 (455)
T 3v47_A 89 NQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKS 168 (455)
T ss_dssp CTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSC
T ss_pred CccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccc
Confidence 9888777888889999999999999887544433 3556888999999999988876655 7788999999999999887
Q ss_pred cCCccCCCC--CCCcEEEcccCcCCCCCCccc--------cCCCCccEEEccCCeeccCchhhhhcc---cCCcEEeccC
Q 003893 361 EIPQSLSKC--SSLQGLFLSNNSLSGKIPRWL--------GNLTVLRHIIMPKNHIEGPIPLEFCQL---RILQILDISD 427 (788)
Q Consensus 361 ~~~~~~~~l--~~L~~L~l~~n~l~~~~~~~l--------~~l~~L~~L~l~~n~~~~~~~~~~~~l---~~L~~L~l~~ 427 (788)
..+..+..+ .+|+.|++++|.+.+..+..+ ..+++|++|++++|.+.+..+..+... ++|+.|++++
T Consensus 169 ~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~ 248 (455)
T 3v47_A 169 ICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSN 248 (455)
T ss_dssp CCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTT
T ss_pred cChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeecc
Confidence 777777665 688899999998886554432 356889999999999988888777654 8899999999
Q ss_pred CcCCCCCCCCCCCCcccEEEccCcccccccCcccccc--cccccEEeCCCCccCCCCCccccCCcCCcEEEccCccCccc
Q 003893 428 NNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFN--CLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGE 505 (788)
Q Consensus 428 n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~--~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~ 505 (788)
|...+.......+.. .....+.. .++|++|++++|.+.+..|..+..+++|++|++++|.+++.
T Consensus 249 ~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 314 (455)
T 3v47_A 249 SYNMGSSFGHTNFKD--------------PDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKI 314 (455)
T ss_dssp CTTTSCCTTCCSSCC--------------CCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEE
T ss_pred ccccccccchhhhcc--------------CcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCccccc
Confidence 876543322111111 11112222 36899999999999988899999999999999999999988
Q ss_pred CcccccCCCCCCEEEccCCcCCccCcccccccchhhhccCCCCCCCcccceeecCCcccCcccccccceEeeecCceecc
Q 003893 506 VPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTY 585 (788)
Q Consensus 506 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~ 585 (788)
.+..+..+++|++|++++|.+++..|..+..++
T Consensus 315 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~----------------------------------------------- 347 (455)
T 3v47_A 315 DDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLD----------------------------------------------- 347 (455)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCEECGGGGTTCT-----------------------------------------------
T ss_pred ChhHhcCcccCCEEECCCCccCCcChhHhcCcc-----------------------------------------------
Confidence 888999999999999999999988887776655
Q ss_pred cCCccCCCceEECCCCcccccCcccccccccCCeEeCCCCCCCCCCCcccCCCCCCCeeeCCCcccCccCc
Q 003893 586 QGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIP 656 (788)
Q Consensus 586 ~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 656 (788)
+|++|++++|++++..|..|..+++|++|+|++|++++..+..|..+++|++|++++|++++..|
T Consensus 348 ------~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 348 ------KLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp ------TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred ------cCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence 89999999999999999999999999999999999998888889999999999999999998776
No 27
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=6.5e-37 Score=332.66 Aligned_cols=315 Identities=29% Similarity=0.373 Sum_probs=147.0
Q ss_pred CCcCEEEccCCcCcccCChhhhhcCCCCcEEEeeCCcCCCCCCccccCCCCCCEEEccCCcCCCccchHHhhCCCCCcEE
Q 003893 248 KQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSL 327 (788)
Q Consensus 248 ~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L 327 (788)
++|++|++++|.++ .++.. .++|++|++++|.+++ +| .++.+++|++|++++|+++ .+|.. .++|++|
T Consensus 111 ~~L~~L~l~~n~l~-~l~~~----~~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~-~lp~~----~~~L~~L 178 (454)
T 1jl5_A 111 QSLKSLLVDNNNLK-ALSDL----PPLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLK-KLPDL----PPSLEFI 178 (454)
T ss_dssp TTCCEEECCSSCCS-CCCSC----CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCS-CCCCC----CTTCCEE
T ss_pred CCCcEEECCCCccC-cccCC----CCCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCc-ccCCC----cccccEE
Confidence 45566666666555 23221 2466667776666664 44 4666677777777777666 45532 2466666
Q ss_pred EccccccCccccccccCCCccCceeccCccCcccCCccCCCCCCCcEEEcccCcCCCCCCccccCCCCccEEEccCCeec
Q 003893 328 ALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIE 407 (788)
Q Consensus 328 ~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~ 407 (788)
++++|.+++. + .+.++++|++|++++|.+.+ +|.. .++|++|++++|.+. .+| .+..+++|++|++++|.+.
T Consensus 179 ~L~~n~l~~l-~-~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~n~l~-~lp-~~~~l~~L~~L~l~~N~l~ 250 (454)
T 1jl5_A 179 AAGNNQLEEL-P-ELQNLPFLTAIYADNNSLKK-LPDL---PLSLESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLK 250 (454)
T ss_dssp ECCSSCCSSC-C-CCTTCTTCCEEECCSSCCSS-CCCC---CTTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCS
T ss_pred ECcCCcCCcC-c-cccCCCCCCEEECCCCcCCc-CCCC---cCcccEEECcCCcCC-ccc-ccCCCCCCCEEECCCCcCC
Confidence 6666666653 2 45566666666666666653 2321 135666666666665 344 2555666666666666555
Q ss_pred cCchhhhhcccCCcEEeccCCcCCCCCCCCCCCCcccEEEccCcccccccCcccccccccccEEeCCCCccCCCCCcccc
Q 003893 408 GPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVD 487 (788)
Q Consensus 408 ~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~ 487 (788)
+. |. ..++|+.|++++|++.+ ++. .+++|++|++++|.+++. +.
T Consensus 251 ~l-~~---~~~~L~~L~l~~N~l~~------------------------l~~----~~~~L~~L~ls~N~l~~l-~~--- 294 (454)
T 1jl5_A 251 TL-PD---LPPSLEALNVRDNYLTD------------------------LPE----LPQSLTFLDVSENIFSGL-SE--- 294 (454)
T ss_dssp SC-CS---CCTTCCEEECCSSCCSC------------------------CCC----CCTTCCEEECCSSCCSEE-SC---
T ss_pred cc-cc---cccccCEEECCCCcccc------------------------cCc----ccCcCCEEECcCCccCcc-cC---
Confidence 32 21 12455666666655542 111 124556666666655531 11
Q ss_pred CCcCCcEEEccCccCcccCcccccCC-CCCCEEEccCCcCCccCcccccccchhhhccCCCCCCCcccceeecCCcccCc
Q 003893 488 GLSQLSYLILAHNNLEGEVPIQLCRL-NQLQLLDLSNNNLHGHIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDP 566 (788)
Q Consensus 488 ~l~~L~~L~L~~n~l~~~~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 566 (788)
..++|+.|++++|++++. ..+ ++|++|++++|++++. |..
T Consensus 295 ~~~~L~~L~l~~N~l~~i-----~~~~~~L~~L~Ls~N~l~~l-p~~--------------------------------- 335 (454)
T 1jl5_A 295 LPPNLYYLNASSNEIRSL-----CDLPPSLEELNVSNNKLIEL-PAL--------------------------------- 335 (454)
T ss_dssp CCTTCCEEECCSSCCSEE-----CCCCTTCCEEECCSSCCSCC-CCC---------------------------------
T ss_pred cCCcCCEEECcCCcCCcc-----cCCcCcCCEEECCCCccccc-ccc---------------------------------
Confidence 114566666666665531 122 3566666666666542 111
Q ss_pred ccccccceEeeecCceecccCCccCCCceEECCCCcccccCcccccccccCCeEeCCCCCCCC--CCCcccCCCCCCCee
Q 003893 567 KKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAG--PIPSTFSNLRNIESL 644 (788)
Q Consensus 567 ~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~--~~~~~~~~l~~L~~L 644 (788)
+++|++|++++|.+++ +|. .+++|++|++++|++++ .+|..+..
T Consensus 336 -----------------------~~~L~~L~L~~N~l~~-lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~------- 381 (454)
T 1jl5_A 336 -----------------------PPRLERLIASFNHLAE-VPE---LPQNLKQLHVEYNPLREFPDIPESVED------- 381 (454)
T ss_dssp -----------------------CTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSSCCCCCTTCCE-------
T ss_pred -----------------------CCcCCEEECCCCcccc-ccc---hhhhccEEECCCCCCCcCCCChHHHHh-------
Confidence 1256666666666663 343 35667777777777765 34444332
Q ss_pred eCCCcccCccCchhhhcCCCCcEEecccCcCcc--cCCCCccccCCCCcCCcCCCCCCC
Q 003893 645 DLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSG--KIPERAAQFATFNESSYEGNPFLC 701 (788)
Q Consensus 645 ~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~--~~~~~~~~~~~l~~~~~~~Np~~C 701 (788)
++.|...+.+|.. +++|+.|++++|++++ .+|.. +..+.+.+|.+.|
T Consensus 382 -L~~n~~~~~i~~~---~~~L~~L~ls~N~l~~~~~iP~s------l~~L~~~~~~~~~ 430 (454)
T 1jl5_A 382 -LRMNSHLAEVPEL---PQNLKQLHVETNPLREFPDIPES------VEDLRMNSERVVD 430 (454)
T ss_dssp -EECCC-----------------------------------------------------
T ss_pred -hhhcccccccccc---cCcCCEEECCCCcCCccccchhh------HhheeCcCcccCC
Confidence 2234444445442 3667777777777776 44542 3344455554444
No 28
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=4e-36 Score=326.42 Aligned_cols=385 Identities=23% Similarity=0.272 Sum_probs=189.9
Q ss_pred CCCcEEEecCCCCCccCchHHhhcCCCCCEEEccCCcccCcCccCccCCCCc-------------CEEEccCCcCcccCC
Q 003893 199 HDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDSLVGPFRLPIHSHKQL-------------RLLDVSKNNFQGHIP 265 (788)
Q Consensus 199 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L-------------~~L~l~~n~l~~~~~ 265 (788)
..|+++++++|.+ +.+|..+ +++++|++|++++|.+.+..+..++.+.+| ++|++++|.++ .+|
T Consensus 11 ~~L~~L~l~~n~l-~~iP~~i-~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~-~lp 87 (454)
T 1jl5_A 11 TFLQEPLRHSSNL-TEMPVEA-ENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLS-SLP 87 (454)
T ss_dssp -------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCS-CCC
T ss_pred ccchhhhcccCch-hhCChhH-hcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCccc-cCC
Confidence 4566666666666 5666553 566666666666666666666655555544 66777766665 344
Q ss_pred hhhhhcCCCCcEEEeeCCcCCCCCCccccCCCCCCEEEccCCcCCCccchHHhhCCCCCcEEEccccccCccccccccCC
Q 003893 266 LEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNL 345 (788)
Q Consensus 266 ~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l 345 (788)
. ..++|++|++++|.+++ +|.. .++|++|++++|.++ .++.. .++|++|++++|.+++. + .+.++
T Consensus 88 ~----~~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~-~l~~~----~~~L~~L~L~~n~l~~l-p-~~~~l 152 (454)
T 1jl5_A 88 E----LPPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLK-ALSDL----PPLLEYLGVSNNQLEKL-P-ELQNS 152 (454)
T ss_dssp S----CCTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCS-CCCSC----CTTCCEEECCSSCCSSC-C-CCTTC
T ss_pred C----CcCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccC-cccCC----CCCCCEEECcCCCCCCC-c-ccCCC
Confidence 3 13566677777666664 4432 356666777666666 44321 24666666666666653 2 36666
Q ss_pred CccCceeccCccCcccCCccCCCCCCCcEEEcccCcCCCCCCccccCCCCccEEEccCCeeccCchhhhhcccCCcEEec
Q 003893 346 TNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDI 425 (788)
Q Consensus 346 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l 425 (788)
++|++|++++|++.+ +|.. ..+|++|++++|.+.+ +| .+..+++|++|++++|.+.+. |.. .++|++|++
T Consensus 153 ~~L~~L~l~~N~l~~-lp~~---~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~l-~~~---~~~L~~L~l 222 (454)
T 1jl5_A 153 SFLKIIDVDNNSLKK-LPDL---PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKKL-PDL---PLSLESIVA 222 (454)
T ss_dssp TTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSSC-CCC---CTTCCEEEC
T ss_pred CCCCEEECCCCcCcc-cCCC---cccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCcC-CCC---cCcccEEEC
Confidence 666666666666653 3332 2366666666666664 33 456666666666666666542 211 245666666
Q ss_pred cCCcCCCCCCCCCCCCcccEEEccCcccccccCcccccccccccEEeCCCCccCCCCCccccCCcCCcEEEccCccCccc
Q 003893 426 SDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGE 505 (788)
Q Consensus 426 ~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~ 505 (788)
++|.+. .++.+..+++|++|++++|.+.+ ++. ..++|++|++++|++++ +|.. +++|++|++++|++++.
T Consensus 223 ~~n~l~-~lp~~~~l~~L~~L~l~~N~l~~-l~~----~~~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ls~N~l~~l 292 (454)
T 1jl5_A 223 GNNILE-ELPELQNLPFLTTIYADNNLLKT-LPD----LPPSLEALNVRDNYLTD-LPEL---PQSLTFLDVSENIFSGL 292 (454)
T ss_dssp CSSCCS-SCCCCTTCTTCCEEECCSSCCSS-CCS----CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSEE
T ss_pred cCCcCC-cccccCCCCCCCEEECCCCcCCc-ccc----cccccCEEECCCCcccc-cCcc---cCcCCEEECcCCccCcc
Confidence 666665 33344445555555555555543 222 12456666666666653 3322 25566666666666532
Q ss_pred CcccccCCCCCCEEEccCCcCCccCcccccccchhhhccCCCCCCCcccceeecCCcccCcccccccceEeeecCceecc
Q 003893 506 VPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTY 585 (788)
Q Consensus 506 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~ 585 (788)
+.. .++|++|++++|++++..
T Consensus 293 -~~~---~~~L~~L~l~~N~l~~i~------------------------------------------------------- 313 (454)
T 1jl5_A 293 -SEL---PPNLYYLNASSNEIRSLC------------------------------------------------------- 313 (454)
T ss_dssp -SCC---CTTCCEEECCSSCCSEEC-------------------------------------------------------
T ss_pred -cCc---CCcCCEEECcCCcCCccc-------------------------------------------------------
Confidence 110 145666666666554311
Q ss_pred cCCccCCCceEECCCCcccccCcccccccccCCeEeCCCCCCCCCCCcccCCCCCCCeeeCCCcccCc--cCchhhhcCC
Q 003893 586 QGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSW--KIPYQLVELN 663 (788)
Q Consensus 586 ~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~--~~~~~l~~l~ 663 (788)
.+|++|++|++++|++++ +|.. +++|+.|++++|++++ +|. .+++|++|++++|++++ .+|.++.
T Consensus 314 --~~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~~-lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~--- 380 (454)
T 1jl5_A 314 --DLPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLAE-VPE---LPQNLKQLHVEYNPLREFPDIPESVE--- 380 (454)
T ss_dssp --CCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSSCCCCCTTCC---
T ss_pred --CCcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCcccc-ccc---hhhhccEEECCCCCCCcCCCChHHHH---
Confidence 123366777777777764 3432 4667777777777763 343 35677777777777765 4444332
Q ss_pred CCcEEecccCcCcccCCCCccccCCCCcCCcCCCCCCC
Q 003893 664 TLAVFSVAYNNLSGKIPERAAQFATFNESSYEGNPFLC 701 (788)
Q Consensus 664 ~L~~L~l~~N~l~~~~~~~~~~~~~l~~~~~~~Np~~C 701 (788)
+++.|.+.+.+|.. +++++.+++++|++..
T Consensus 381 -----~L~~n~~~~~i~~~---~~~L~~L~ls~N~l~~ 410 (454)
T 1jl5_A 381 -----DLRMNSHLAEVPEL---PQNLKQLHVETNPLRE 410 (454)
T ss_dssp -----EEECCC---------------------------
T ss_pred -----hhhhcccccccccc---cCcCCEEECCCCcCCc
Confidence 22345566655552 3678899999999875
No 29
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=3.4e-36 Score=332.49 Aligned_cols=347 Identities=18% Similarity=0.151 Sum_probs=229.4
Q ss_pred cEEEeeCCcCCCCCCccccCCCCCCEEEccCCcCCCccchHHhhCCCCCcEEEccccccCccccccccCCCccCceeccC
Q 003893 276 TVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEG 355 (788)
Q Consensus 276 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~ 355 (788)
+.++.+++.++ .+|..+. ++++.|++++|.++ .++...+.++++|++|++++|.+++..+..|.++++|++|++++
T Consensus 14 ~~v~c~~~~l~-~ip~~~~--~~l~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~ 89 (477)
T 2id5_A 14 RAVLCHRKRFV-AVPEGIP--TETRLLDLGKNRIK-TLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRS 89 (477)
T ss_dssp TEEECCSCCCS-SCCSCCC--TTCSEEECCSSCCC-EECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcC-cCCCCCC--CCCcEEECCCCccc-eECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCC
Confidence 34555555554 3343332 35555666665555 34333334455555555555555555555555555555555555
Q ss_pred ccCcccCCccCCCCCCCcEEEcccCcCCCCCCccccCCCCccEEEccCCeeccCchhhhhcccCCcEEeccCCcCCCCCC
Q 003893 356 NHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLP 435 (788)
Q Consensus 356 n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ 435 (788)
|.+....+..|.++++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..|.++++|+.|++++|.++
T Consensus 90 n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~---- 165 (477)
T 2id5_A 90 NRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLT---- 165 (477)
T ss_dssp SCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCS----
T ss_pred CcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCc----
Confidence 5555444444555555555555555555444555555555555555555555444445555555555555555443
Q ss_pred CCCCCCcccEEEccCcccccccCcccccccccccEEeCCCCccCCCCCccccCCcCCcEEEccCccCcccCcccccCCCC
Q 003893 436 SCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQ 515 (788)
Q Consensus 436 ~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 515 (788)
.++...+.++++|+.|++++|.+.+..+..|..+++|+.|++++|...+..+.......+
T Consensus 166 --------------------~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 225 (477)
T 2id5_A 166 --------------------SIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLN 225 (477)
T ss_dssp --------------------SCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCC
T ss_pred --------------------ccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCcc
Confidence 234446778888888888888888777778888888888888888776666666666668
Q ss_pred CCEEEccCCcCCccCcccccccchhhhccCCCCCCCcccceeecCCcccCcccccccceEeeecCceecccCCccCCCce
Q 003893 516 LQLLDLSNNNLHGHIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSG 595 (788)
Q Consensus 516 L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~ 595 (788)
|++|++++|.+++..+..+..+. +|+.
T Consensus 226 L~~L~l~~n~l~~~~~~~~~~l~-----------------------------------------------------~L~~ 252 (477)
T 2id5_A 226 LTSLSITHCNLTAVPYLAVRHLV-----------------------------------------------------YLRF 252 (477)
T ss_dssp CSEEEEESSCCCSCCHHHHTTCT-----------------------------------------------------TCCE
T ss_pred ccEEECcCCcccccCHHHhcCcc-----------------------------------------------------ccCe
Confidence 88888888888866655555544 7888
Q ss_pred EECCCCcccccCcccccccccCCeEeCCCCCCCCCCCcccCCCCCCCeeeCCCcccCccCchhhhcCCCCcEEecccCcC
Q 003893 596 LDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNL 675 (788)
Q Consensus 596 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l 675 (788)
|++++|.+++..+..|..+++|+.|+|++|++++..|..|..+++|++|++++|++++..+..|..+++|+.|++++|++
T Consensus 253 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l 332 (477)
T 2id5_A 253 LNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPL 332 (477)
T ss_dssp EECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCE
T ss_pred eECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCc
Confidence 88888888888888888888888888888888888888888888888888888888877777778888888888888888
Q ss_pred cccCCCCccccCCCCcCCcCCCCCCCCCC
Q 003893 676 SGKIPERAAQFATFNESSYEGNPFLCGPP 704 (788)
Q Consensus 676 ~~~~~~~~~~~~~l~~~~~~~Np~~C~~~ 704 (788)
++..+.. .-+.......+.+++..|..+
T Consensus 333 ~c~c~~~-~~~~~~~~~~~~~~~~~C~~p 360 (477)
T 2id5_A 333 ACDCRLL-WVFRRRWRLNFNRQQPTCATP 360 (477)
T ss_dssp ECSGGGH-HHHTTTTSSCCTTCCCBEEES
T ss_pred cCccchH-hHHhhhhccccCccCceeCCc
Confidence 8754421 122333445667777788654
No 30
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=8.3e-36 Score=329.38 Aligned_cols=348 Identities=20% Similarity=0.219 Sum_probs=298.4
Q ss_pred CEEEccCCcCcccCChhhhhcCCCCcEEEeeCCcCCCCCCccccCCCCCCEEEccCCcCCCccchHHhhCCCCCcEEEcc
Q 003893 251 RLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALS 330 (788)
Q Consensus 251 ~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~l~ 330 (788)
+.++.+++.++ .+|..+. +++++|++++|.+++..+..|..+++|++|++++|.++ .++...+.++++|++|+++
T Consensus 14 ~~v~c~~~~l~-~ip~~~~---~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~-~~~~~~~~~l~~L~~L~L~ 88 (477)
T 2id5_A 14 RAVLCHRKRFV-AVPEGIP---TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVS-AVEPGAFNNLFNLRTLGLR 88 (477)
T ss_dssp TEEECCSCCCS-SCCSCCC---TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCC-EECTTTTTTCTTCCEEECC
T ss_pred CEEEeCCCCcC-cCCCCCC---CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccC-EeChhhhhCCccCCEEECC
Confidence 57888888887 7887653 58999999999999888889999999999999999998 5544455679999999999
Q ss_pred ccccCccccccccCCCccCceeccCccCcccCCccCCCCCCCcEEEcccCcCCCCCCccccCCCCccEEEccCCeeccCc
Q 003893 331 NNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPI 410 (788)
Q Consensus 331 ~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~ 410 (788)
+|.++...+..|.++++|++|++++|.+.+..+..|..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..
T Consensus 89 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 168 (477)
T 2id5_A 89 SNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIP 168 (477)
T ss_dssp SSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCC
T ss_pred CCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccC
Confidence 99999888788889999999999999999888889999999999999999999888889999999999999999999888
Q ss_pred hhhhhcccCCcEEeccCCcCCCCCCCCCCCCcccEEEccCcccccccCcccccccccccEEeCCCCccCCCCCccccCCc
Q 003893 411 PLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLS 490 (788)
Q Consensus 411 ~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~ 490 (788)
+..+..+++|+.|++++|.+.+ ++...|..+++|++|++++|...+.++.......
T Consensus 169 ~~~l~~l~~L~~L~l~~n~i~~------------------------~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 224 (477)
T 2id5_A 169 TEALSHLHGLIVLRLRHLNINA------------------------IRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGL 224 (477)
T ss_dssp HHHHTTCTTCCEEEEESCCCCE------------------------ECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTC
T ss_pred hhHhcccCCCcEEeCCCCcCcE------------------------eChhhcccCcccceeeCCCCccccccCcccccCc
Confidence 8889999999999999998763 2333678889999999999988777766666667
Q ss_pred CCcEEEccCccCcccCcccccCCCCCCEEEccCCcCCccCcccccccchhhhccCCCCCCCcccceeecCCcccCccccc
Q 003893 491 QLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQI 570 (788)
Q Consensus 491 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 570 (788)
+|++|++++|.++...+..+..+++|++|++++|++++..+..|..+.
T Consensus 225 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~-------------------------------- 272 (477)
T 2id5_A 225 NLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELL-------------------------------- 272 (477)
T ss_dssp CCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCT--------------------------------
T ss_pred cccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccc--------------------------------
Confidence 999999999999966667899999999999999999988777666554
Q ss_pred ccceEeeecCceecccCCccCCCceEECCCCcccccCcccccccccCCeEeCCCCCCCCCCCcccCCCCCCCeeeCCCcc
Q 003893 571 LESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNK 650 (788)
Q Consensus 571 l~~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 650 (788)
+|+.|++++|++++..|..|..+++|+.|+|++|++++..+..|..+++|++|++++|+
T Consensus 273 ---------------------~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 331 (477)
T 2id5_A 273 ---------------------RLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNP 331 (477)
T ss_dssp ---------------------TCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSC
T ss_pred ---------------------cCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCC
Confidence 89999999999999999999999999999999999998888889999999999999999
Q ss_pred cCccCch-hhhcCCCCcEEecccCcCcccCCCC
Q 003893 651 LSWKIPY-QLVELNTLAVFSVAYNNLSGKIPER 682 (788)
Q Consensus 651 l~~~~~~-~l~~l~~L~~L~l~~N~l~~~~~~~ 682 (788)
+....+. ++. .....+++.++...+..|..
T Consensus 332 l~c~c~~~~~~--~~~~~~~~~~~~~~C~~p~~ 362 (477)
T 2id5_A 332 LACDCRLLWVF--RRRWRLNFNRQQPTCATPEF 362 (477)
T ss_dssp EECSGGGHHHH--TTTTSSCCTTCCCBEEESGG
T ss_pred ccCccchHhHH--hhhhccccCccCceeCCchH
Confidence 9754322 222 23344556677777766654
No 31
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=2.2e-34 Score=316.25 Aligned_cols=347 Identities=27% Similarity=0.344 Sum_probs=248.1
Q ss_pred cCCCCCEEEccCCcccCcCccCccCCCCcCEEEccCCcCcccCChhhhhcCCCCcEEEeeCCcCCCCCCccccCCCCCCE
Q 003893 222 NNTKLRQLSLVNDSLVGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQF 301 (788)
Q Consensus 222 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 301 (788)
.++++++|++.++.+.... .+..+++|++|++++|.++ .++. + ..+++|++|++++|.+.+..+ +..+++|++
T Consensus 44 ~l~~l~~L~l~~~~i~~l~--~~~~l~~L~~L~Ls~n~l~-~~~~-~-~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~ 116 (466)
T 1o6v_A 44 DLDQVTTLQADRLGIKSID--GVEYLNNLTQINFSNNQLT-DITP-L-KNLTKLVDILMNNNQIADITP--LANLTNLTG 116 (466)
T ss_dssp HHHTCCEEECCSSCCCCCT--TGGGCTTCCEEECCSSCCC-CCGG-G-TTCTTCCEEECCSSCCCCCGG--GTTCTTCCE
T ss_pred HhccccEEecCCCCCccCc--chhhhcCCCEEECCCCccC-Cchh-h-hccccCCEEECCCCccccChh--hcCCCCCCE
Confidence 4567777888777766532 3566777777777777776 3443 3 336777777777777774433 777777777
Q ss_pred EEccCCcCCCccchHHhhCCCCCcEEEccccccCccccccccCCCccCceeccCccCcccCCccCCCCCCCcEEEcccCc
Q 003893 302 LDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNS 381 (788)
Q Consensus 302 L~L~~n~i~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~ 381 (788)
|++++|.++ .++. +..+++|++|++++|.+.+.. .+..+++|++|+++ +.+.+. ..+..+++|++|++++|.
T Consensus 117 L~L~~n~l~-~~~~--~~~l~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~l~-~~~~~~--~~~~~l~~L~~L~l~~n~ 188 (466)
T 1o6v_A 117 LTLFNNQIT-DIDP--LKNLTNLNRLELSSNTISDIS--ALSGLTSLQQLSFG-NQVTDL--KPLANLTTLERLDISSNK 188 (466)
T ss_dssp EECCSSCCC-CCGG--GTTCTTCSEEEEEEEEECCCG--GGTTCTTCSEEEEE-ESCCCC--GGGTTCTTCCEEECCSSC
T ss_pred EECCCCCCC-CChH--HcCCCCCCEEECCCCccCCCh--hhccCCcccEeecC-CcccCc--hhhccCCCCCEEECcCCc
Confidence 777777776 4444 445777777777777766532 35667777777775 333322 226666777777777776
Q ss_pred CCCCCCccccCCCCccEEEccCCeeccCchhhhhcccCCcEEeccCCcCCCCCCCCCCCCcccEEEccCcccccccCccc
Q 003893 382 LSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGT 461 (788)
Q Consensus 382 l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~ 461 (788)
+.+. ..+..+++|++|++++|.+.+..+ +..+++|+.|++++|.+. + + ..
T Consensus 189 l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~-----------------------~-~--~~ 238 (466)
T 1o6v_A 189 VSDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLK-----------------------D-I--GT 238 (466)
T ss_dssp CCCC--GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCC-----------------------C-C--GG
T ss_pred CCCC--hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcc-----------------------c-c--hh
Confidence 6532 235566666666666666655443 455666666666666554 2 2 15
Q ss_pred ccccccccEEeCCCCccCCCCCccccCCcCCcEEEccCccCcccCcccccCCCCCCEEEccCCcCCccCcccccccchhh
Q 003893 462 FFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHE 541 (788)
Q Consensus 462 ~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~ 541 (788)
+..+++|++|++++|.+.+..+ +..+++|++|++++|.+++..+ +..+++|++|++++|++.+..+ +..++
T Consensus 239 l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~--- 309 (466)
T 1o6v_A 239 LASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLK--- 309 (466)
T ss_dssp GGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCT---
T ss_pred hhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCC---
Confidence 6778889999999998886544 7888999999999999885443 7888999999999998876544 33322
Q ss_pred hccCCCCCCCcccceeecCCcccCcccccccceEeeecCceecccCCccCCCceEECCCCcccccCcccccccccCCeEe
Q 003893 542 RYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLN 621 (788)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 621 (788)
+|+.|++++|.+++..| +..+++|+.|+
T Consensus 310 --------------------------------------------------~L~~L~L~~n~l~~~~~--~~~l~~L~~L~ 337 (466)
T 1o6v_A 310 --------------------------------------------------NLTYLTLYFNNISDISP--VSSLTKLQRLF 337 (466)
T ss_dssp --------------------------------------------------TCSEEECCSSCCSCCGG--GGGCTTCCEEE
T ss_pred --------------------------------------------------CCCEEECcCCcCCCchh--hccCccCCEeE
Confidence 78999999999987655 78899999999
Q ss_pred CCCCCCCCCCCcccCCCCCCCeeeCCCcccCccCchhhhcCCCCcEEecccCcCccc
Q 003893 622 LSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSGK 678 (788)
Q Consensus 622 Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~ 678 (788)
+++|++++. ..+..+++|++|++++|++++..| +..+++|+.|++++|++++.
T Consensus 338 l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~~ 390 (466)
T 1o6v_A 338 FYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNA 390 (466)
T ss_dssp CCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEECC
T ss_pred CCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccCC
Confidence 999999865 468889999999999999987766 78899999999999999874
No 32
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=6.8e-34 Score=312.36 Aligned_cols=346 Identities=26% Similarity=0.346 Sum_probs=285.6
Q ss_pred CCCCCcEEEecCCCCCccCchHHhhcCCCCCEEEccCCcccCcCccCccCCCCcCEEEccCCcCcccCChhhhhcCCCCc
Q 003893 197 NQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDSLVGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLT 276 (788)
Q Consensus 197 ~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~ 276 (788)
.+++++.|++.++.+.. ++. +..+++|++|++++|.+++..+ +..+++|++|++++|.+. .++. + ..+++|+
T Consensus 44 ~l~~l~~L~l~~~~i~~-l~~--~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~-~~~~-~-~~l~~L~ 115 (466)
T 1o6v_A 44 DLDQVTTLQADRLGIKS-IDG--VEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIA-DITP-L-ANLTNLT 115 (466)
T ss_dssp HHHTCCEEECCSSCCCC-CTT--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC-CCGG-G-TTCTTCC
T ss_pred HhccccEEecCCCCCcc-Ccc--hhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccc-cChh-h-cCCCCCC
Confidence 35789999999999854 554 4789999999999999988654 889999999999999998 4444 4 4489999
Q ss_pred EEEeeCCcCCCCCCccccCCCCCCEEEccCCcCCCccchHHhhCCCCCcEEEccccccCccccccccCCCccCceeccCc
Q 003893 277 VFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGN 356 (788)
Q Consensus 277 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n 356 (788)
+|++++|.+.+. +. +..+++|++|++++|.+. .++. +..+++|++|+++ +.+.... .+.++++|++|++++|
T Consensus 116 ~L~L~~n~l~~~-~~-~~~l~~L~~L~l~~n~l~-~~~~--~~~l~~L~~L~l~-~~~~~~~--~~~~l~~L~~L~l~~n 187 (466)
T 1o6v_A 116 GLTLFNNQITDI-DP-LKNLTNLNRLELSSNTIS-DISA--LSGLTSLQQLSFG-NQVTDLK--PLANLTTLERLDISSN 187 (466)
T ss_dssp EEECCSSCCCCC-GG-GTTCTTCSEEEEEEEEEC-CCGG--GTTCTTCSEEEEE-ESCCCCG--GGTTCTTCCEEECCSS
T ss_pred EEECCCCCCCCC-hH-HcCCCCCCEEECCCCccC-CChh--hccCCcccEeecC-CcccCch--hhccCCCCCEEECcCC
Confidence 999999999864 33 899999999999999998 6664 4579999999997 4454433 3788999999999999
Q ss_pred cCcccCCccCCCCCCCcEEEcccCcCCCCCCccccCCCCccEEEccCCeeccCchhhhhcccCCcEEeccCCcCCCCCCC
Q 003893 357 HFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPS 436 (788)
Q Consensus 357 ~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~ 436 (788)
.+.+. ..+..+++|++|++++|.+.+..+ +..+++|++|++++|.+.+. ..+..+++|+.|++++|.+.+.
T Consensus 188 ~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~--- 258 (466)
T 1o6v_A 188 KVSDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNL--- 258 (466)
T ss_dssp CCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCC---
T ss_pred cCCCC--hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccc---
Confidence 98754 348899999999999999986655 77899999999999999864 4678899999999999987632
Q ss_pred CCCCCcccEEEccCcccccccCcccccccccccEEeCCCCccCCCCCccccCCcCCcEEEccCccCcccCcccccCCCCC
Q 003893 437 CYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQL 516 (788)
Q Consensus 437 ~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 516 (788)
+ .+..+++|++|++++|.+++..+ +..+++|+.|++++|++.+..+ +..+++|
T Consensus 259 ---------------------~--~~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L 311 (466)
T 1o6v_A 259 ---------------------A--PLSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNL 311 (466)
T ss_dssp ---------------------G--GGTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTC
T ss_pred ---------------------h--hhhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCC
Confidence 1 26667888888888888885443 7788889999999998885443 7788999
Q ss_pred CEEEccCCcCCccCcccccccchhhhccCCCCCCCcccceeecCCcccCcccccccceEeeecCceecccCCccCCCceE
Q 003893 517 QLLDLSNNNLHGHIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGL 596 (788)
Q Consensus 517 ~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L 596 (788)
++|++++|++++..| +..++ +|+.|
T Consensus 312 ~~L~L~~n~l~~~~~--~~~l~-----------------------------------------------------~L~~L 336 (466)
T 1o6v_A 312 TYLTLYFNNISDISP--VSSLT-----------------------------------------------------KLQRL 336 (466)
T ss_dssp SEEECCSSCCSCCGG--GGGCT-----------------------------------------------------TCCEE
T ss_pred CEEECcCCcCCCchh--hccCc-----------------------------------------------------cCCEe
Confidence 999999998887655 33322 78999
Q ss_pred ECCCCcccccCcccccccccCCeEeCCCCCCCCCCCcccCCCCCCCeeeCCCcccCc
Q 003893 597 DLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSW 653 (788)
Q Consensus 597 ~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 653 (788)
++++|.+++. ..+..+++|+.|++++|++++..| +..+++|++|++++|++++
T Consensus 337 ~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 337 FFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTN 389 (466)
T ss_dssp ECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEEC
T ss_pred ECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccC
Confidence 9999998865 468899999999999999998776 8889999999999999986
No 33
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=3.2e-34 Score=307.73 Aligned_cols=335 Identities=21% Similarity=0.196 Sum_probs=198.4
Q ss_pred CCCCcEEEeeCCcCCCCCCccccCCCCCCEEEccCCcCCCccchHHhhCCCCCcEEEccccccCccccccccCCCccCce
Q 003893 272 LSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWL 351 (788)
Q Consensus 272 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L 351 (788)
+++++.|++++|.+....+..+..+++|++|++++|.++ .++...+..+++|++|++++|.+++..+..+.++++|++|
T Consensus 44 l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 122 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 122 (390)
T ss_dssp GCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred cCCceEEEecCCchhhCChhHhcccccCcEEECCCCccc-ccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEE
Confidence 345666666666655443344555666666666666655 4444334445556666666665555555555555555555
Q ss_pred eccCccCcccCCccCCCCCCCcEEEcccCcCCCCCCccccCCCCccEEEccCCeeccCchhhhhcccCCcEEeccCCcCC
Q 003893 352 QLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNIS 431 (788)
Q Consensus 352 ~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~ 431 (788)
++++|.+....+..|..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+. .+..+++|+.|++++|.+.
T Consensus 123 ~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~l~ 199 (390)
T 3o6n_A 123 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLS 199 (390)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSCCS
T ss_pred ECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeeccccccc
Confidence 5555555533333345555555555555555554455555555555555555555433 1333455555555555443
Q ss_pred CCCCCCCCCCcccEEEccCcccccccCcccccccccccEEeCCCCccCCCCCccccCCcCCcEEEccCccCcccCccccc
Q 003893 432 GSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLC 511 (788)
Q Consensus 432 ~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 511 (788)
.+...++|++|++++|.+... +. ...++|+.|++++|.+++. ..+.
T Consensus 200 -----------------------------~~~~~~~L~~L~l~~n~l~~~-~~--~~~~~L~~L~l~~n~l~~~--~~l~ 245 (390)
T 3o6n_A 200 -----------------------------TLAIPIAVEELDASHNSINVV-RG--PVNVELTILKLQHNNLTDT--AWLL 245 (390)
T ss_dssp -----------------------------EEECCSSCSEEECCSSCCCEE-EC--CCCSSCCEEECCSSCCCCC--GGGG
T ss_pred -----------------------------ccCCCCcceEEECCCCeeeec-cc--cccccccEEECCCCCCccc--HHHc
Confidence 122334667777777766533 22 2235677777777777642 4566
Q ss_pred CCCCCCEEEccCCcCCccCcccccccchhhhccCCCCCCCcccceeecCCcccCcccccccceEeeecCceecccCCccC
Q 003893 512 RLNQLQLLDLSNNNLHGHIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPS 591 (788)
Q Consensus 512 ~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~ 591 (788)
.+++|++|++++|.+.+..|..+..++
T Consensus 246 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~----------------------------------------------------- 272 (390)
T 3o6n_A 246 NYPGLVEVDLSYNELEKIMYHPFVKMQ----------------------------------------------------- 272 (390)
T ss_dssp GCTTCSEEECCSSCCCEEESGGGTTCS-----------------------------------------------------
T ss_pred CCCCccEEECCCCcCCCcChhHccccc-----------------------------------------------------
Confidence 677777777777777666665555443
Q ss_pred CCceEECCCCcccccCcccccccccCCeEeCCCCCCCCCCCcccCCCCCCCeeeCCCcccCccCchhhhcCCCCcEEecc
Q 003893 592 LLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVA 671 (788)
Q Consensus 592 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~ 671 (788)
+|++|++++|++++ +|..+..+++|++|+|++|+++ .+|..+..+++|++|++++|+++.. + +..+++|+.|+++
T Consensus 273 ~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~-~--~~~~~~L~~L~l~ 347 (390)
T 3o6n_A 273 RLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLS 347 (390)
T ss_dssp SCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECC
T ss_pred cCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCcccee-C--chhhccCCEEEcC
Confidence 67777777777764 3445566777777788777777 3455566777778888888877743 2 5566777888888
Q ss_pred cCcCcccCCCCccccCCCCcCCcCCCCCCCCCC
Q 003893 672 YNNLSGKIPERAAQFATFNESSYEGNPFLCGPP 704 (788)
Q Consensus 672 ~N~l~~~~~~~~~~~~~l~~~~~~~Np~~C~~~ 704 (788)
+|++.+.... ..+..+....+.+++..|.++
T Consensus 348 ~N~~~~~~~~--~~~~~~~~~~~~~~~~~c~~~ 378 (390)
T 3o6n_A 348 HNDWDCNSLR--ALFRNVARPAVDDADQHCKID 378 (390)
T ss_dssp SSCEEHHHHH--HHTTTCCTTTBCCCCSCCCTT
T ss_pred CCCccchhHH--HHHHHHHhhcccccCceeccc
Confidence 8877764322 234455556667777777654
No 34
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=1.3e-34 Score=314.95 Aligned_cols=361 Identities=18% Similarity=0.170 Sum_probs=222.3
Q ss_pred CCccccCCCCCcEEEecCCCCCccCchHHhhcCCCCCEEEccCCcccCcCccCccCCCCcCEEEccCCcCcccCChhhhh
Q 003893 191 FPKFLYNQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDSLVGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGD 270 (788)
Q Consensus 191 ~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~ 270 (788)
.+..+..+++|++|++++|.+++. | . ++.+++|++|++++|.+++. ++..+++|++|++++|.+++ ++ +.
T Consensus 34 ~~~~~~~l~~L~~L~Ls~n~l~~~-~-~-l~~l~~L~~L~Ls~n~l~~~---~~~~l~~L~~L~Ls~N~l~~-~~--~~- 103 (457)
T 3bz5_A 34 DTISEEQLATLTSLDCHNSSITDM-T-G-IEKLTGLTKLICTSNNITTL---DLSQNTNLTYLACDSNKLTN-LD--VT- 103 (457)
T ss_dssp SEEEHHHHTTCCEEECCSSCCCCC-T-T-GGGCTTCSEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CT-
T ss_pred cccChhHcCCCCEEEccCCCcccC-h-h-hcccCCCCEEEccCCcCCeE---ccccCCCCCEEECcCCCCce-ee--cC-
Confidence 334556667777777777777653 3 2 36777777777777777664 26667777777777777763 33 22
Q ss_pred cCCCCcEEEeeCCcCCCCCCccccCCCCCCEEEccCCcCCCccchHHhhCCCCCcEEEccccccCccccccccCCCccCc
Q 003893 271 ILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIW 350 (788)
Q Consensus 271 ~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~ 350 (788)
.+++|++|++++|.+++. + ++.+++|++|++++|.++ .++ +..+++|++|++++|...+.. .+..+++|++
T Consensus 104 ~l~~L~~L~L~~N~l~~l-~--~~~l~~L~~L~l~~N~l~-~l~---l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~ 174 (457)
T 3bz5_A 104 PLTKLTYLNCDTNKLTKL-D--VSQNPLLTYLNCARNTLT-EID---VSHNTQLTELDCHLNKKITKL--DVTPQTQLTT 174 (457)
T ss_dssp TCTTCCEEECCSSCCSCC-C--CTTCTTCCEEECTTSCCS-CCC---CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCE
T ss_pred CCCcCCEEECCCCcCCee-c--CCCCCcCCEEECCCCccc-eec---cccCCcCCEEECCCCCccccc--ccccCCcCCE
Confidence 366777777777776642 2 666777777777777776 343 334666777777766433222 3455666667
Q ss_pred eeccCccCcccCCccCCCCCCCcEEEcccCcCCCCCCccccCCCCccEEEccCCeeccCchhhhhcccCCcEEeccCCcC
Q 003893 351 LQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNI 430 (788)
Q Consensus 351 L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~ 430 (788)
|++++|++.+ ++ +..+++|+.|++++|.+++. .+..+++|+.|++++|++++ +| +..+++|+.|++++|++
T Consensus 175 L~ls~n~l~~-l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l 245 (457)
T 3bz5_A 175 LDCSFNKITE-LD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPL 245 (457)
T ss_dssp EECCSSCCCC-CC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCC
T ss_pred EECCCCccce-ec--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcC
Confidence 7776666664 23 55666666666666666643 25556666666666666665 23 55566666666666666
Q ss_pred CCCCCCCCCCCcccEEEccCcccccccCcccccccccccEEeCCCCccCCCCCccccCCcCCcEEEccCccCcccCcccc
Q 003893 431 SGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQL 510 (788)
Q Consensus 431 ~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 510 (788)
++.. ...+++|+.|+++.| +|+.|++++|.+.+.+| +..+++|+.|++++|...+.+|.
T Consensus 246 ~~~~--~~~l~~L~~L~l~~n---------------~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~-- 304 (457)
T 3bz5_A 246 TELD--VSTLSKLTTLHCIQT---------------DLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDC-- 304 (457)
T ss_dssp SCCC--CTTCTTCCEEECTTC---------------CCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEEC--
T ss_pred CCcC--HHHCCCCCEEeccCC---------------CCCEEECCCCccCCccc--ccccccCCEEECCCCcccceecc--
Confidence 5432 112333343333222 23334444444333322 23344444444444443333331
Q ss_pred cCCCCCCEEEccCCcCCccCcccccccchhhhccCCCCCCCcccceeecCCcccCcccccccceEeeecCceecccCCcc
Q 003893 511 CRLNQLQLLDLSNNNLHGHIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVP 590 (788)
Q Consensus 511 ~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~ 590 (788)
..++|+.|++++|
T Consensus 305 -~~~~L~~L~l~~~------------------------------------------------------------------ 317 (457)
T 3bz5_A 305 -QAAGITELDLSQN------------------------------------------------------------------ 317 (457)
T ss_dssp -TTCCCSCCCCTTC------------------------------------------------------------------
T ss_pred -CCCcceEechhhc------------------------------------------------------------------
Confidence 2233333333332
Q ss_pred CCCceEECCCCcccccCcccccccccCCeEeCCCCCCCCCCCcccCCCCCCCeeeCCCcccCccCchhhhcCCCCcEEec
Q 003893 591 SLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSV 670 (788)
Q Consensus 591 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l 670 (788)
++|++|++++|++++. + ++.+++|+.|++++|++++ ++.|..|++++|.+.+. ..+..|..+++
T Consensus 318 ~~L~~L~L~~N~l~~l-~--l~~l~~L~~L~l~~N~l~~--------l~~L~~L~l~~n~l~g~-----~~~~~l~~l~l 381 (457)
T 3bz5_A 318 PKLVYLYLNNTELTEL-D--VSHNTKLKSLSCVNAHIQD--------FSSVGKIPALNNNFEAE-----GQTITMPKETL 381 (457)
T ss_dssp TTCCEEECTTCCCSCC-C--CTTCTTCSEEECCSSCCCB--------CTTGGGSSGGGTSEEEE-----EEEEECCCBCC
T ss_pred ccCCEEECCCCccccc-c--cccCCcCcEEECCCCCCCC--------ccccccccccCCcEEec-----ceeeecCcccc
Confidence 2799999999999975 3 8899999999999999985 35678889999999875 24456788999
Q ss_pred ccCcCcccCCCCc
Q 003893 671 AYNNLSGKIPERA 683 (788)
Q Consensus 671 ~~N~l~~~~~~~~ 683 (788)
++|+++|.+|..+
T Consensus 382 ~~N~l~g~ip~~~ 394 (457)
T 3bz5_A 382 TNNSLTIAVSPDL 394 (457)
T ss_dssp BTTBEEEECCTTC
T ss_pred ccCcEEEEcChhH
Confidence 9999999998754
No 35
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=3.4e-33 Score=316.17 Aligned_cols=335 Identities=21% Similarity=0.192 Sum_probs=216.4
Q ss_pred CCCCcEEEeeCCcCCCCCCccccCCCCCCEEEccCCcCCCccchHHhhCCCCCcEEEccccccCccccccccCCCccCce
Q 003893 272 LSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWL 351 (788)
Q Consensus 272 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L 351 (788)
+++++.+++++|.+....+..+..+++|++|++++|.++ .++...+..+++|++|++++|.+++..+..|.++++|++|
T Consensus 50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 128 (597)
T 3oja_B 50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 128 (597)
T ss_dssp GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCC-CCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEE
Confidence 345666666666665444444556666666666666665 4443333455666666666666665555555556666666
Q ss_pred eccCccCcccCCccCCCCCCCcEEEcccCcCCCCCCccccCCCCccEEEccCCeeccCchhhhhcccCCcEEeccCCcCC
Q 003893 352 QLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNIS 431 (788)
Q Consensus 352 ~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~ 431 (788)
++++|.+.+..+..|..+++|++|++++|.+.+..|..+..+++|+.|++++|.+.+.. +..+++|+.|++++|.+.
T Consensus 129 ~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~l~~L~~L~l~~n~l~ 205 (597)
T 3oja_B 129 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLLS 205 (597)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC---GGGCTTCSEEECCSSCCS
T ss_pred EeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC---hhhhhhhhhhhcccCccc
Confidence 66666665444444555666666666666665555555555566666666665555432 333455555555555443
Q ss_pred CCCCCCCCCCcccEEEccCcccccccCcccccccccccEEeCCCCccCCCCCccccCCcCCcEEEccCccCcccCccccc
Q 003893 432 GSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLC 511 (788)
Q Consensus 432 ~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 511 (788)
.+...++|++|++++|.+....+. + .++|+.|++++|.+++ +..+.
T Consensus 206 -----------------------------~l~~~~~L~~L~ls~n~l~~~~~~-~--~~~L~~L~L~~n~l~~--~~~l~ 251 (597)
T 3oja_B 206 -----------------------------TLAIPIAVEELDASHNSINVVRGP-V--NVELTILKLQHNNLTD--TAWLL 251 (597)
T ss_dssp -----------------------------EEECCTTCSEEECCSSCCCEEECS-C--CSCCCEEECCSSCCCC--CGGGG
T ss_pred -----------------------------cccCCchhheeeccCCcccccccc-c--CCCCCEEECCCCCCCC--Chhhc
Confidence 233345677778877777633221 1 3577888888887774 35677
Q ss_pred CCCCCCEEEccCCcCCccCcccccccchhhhccCCCCCCCcccceeecCCcccCcccccccceEeeecCceecccCCccC
Q 003893 512 RLNQLQLLDLSNNNLHGHIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPS 591 (788)
Q Consensus 512 ~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~ 591 (788)
.+++|++|++++|.+.+..|..+..++
T Consensus 252 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~----------------------------------------------------- 278 (597)
T 3oja_B 252 NYPGLVEVDLSYNELEKIMYHPFVKMQ----------------------------------------------------- 278 (597)
T ss_dssp GCTTCSEEECCSSCCCEEESGGGTTCS-----------------------------------------------------
T ss_pred cCCCCCEEECCCCccCCCCHHHhcCcc-----------------------------------------------------
Confidence 788888888888888777776665554
Q ss_pred CCceEECCCCcccccCcccccccccCCeEeCCCCCCCCCCCcccCCCCCCCeeeCCCcccCccCchhhhcCCCCcEEecc
Q 003893 592 LLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVA 671 (788)
Q Consensus 592 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~ 671 (788)
+|+.|+|++|.+++ +|..+..+++|+.|+|++|.++ .+|..+..+++|++|++++|++++.. +..+++|+.|+++
T Consensus 279 ~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~~---~~~~~~L~~L~l~ 353 (597)
T 3oja_B 279 RLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLK---LSTHHTLKNLTLS 353 (597)
T ss_dssp SCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCCC---CCTTCCCSEEECC
T ss_pred CCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCcC---hhhcCCCCEEEee
Confidence 78888888888875 3556677888888888888888 46667778888888888888887542 5567888889999
Q ss_pred cCcCcccCCCCccccCCCCcCCcCCCCCCCCCC
Q 003893 672 YNNLSGKIPERAAQFATFNESSYEGNPFLCGPP 704 (788)
Q Consensus 672 ~N~l~~~~~~~~~~~~~l~~~~~~~Np~~C~~~ 704 (788)
+|+++|.... ..+..+....+.+++..|+.+
T Consensus 354 ~N~~~~~~~~--~~~~~~~~~~~~~~~~~C~~~ 384 (597)
T 3oja_B 354 HNDWDCNSLR--ALFRNVARPAVDDADQHCKID 384 (597)
T ss_dssp SSCEEHHHHH--HHTTTCCTTTBCCCCCCCCTT
T ss_pred CCCCCChhHH--HHHHHHhhhccccccccCCcc
Confidence 9988875433 345556666777888888753
No 36
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=3.2e-32 Score=295.97 Aligned_cols=349 Identities=19% Similarity=0.162 Sum_probs=242.5
Q ss_pred hcCCCCCEEEccCCcccCcCccCccCCCCcCEEEccCCcCcccCChhhhhcCCCCcEEEeeCCcCCCCCCccccCCCCCC
Q 003893 221 ENNTKLRQLSLVNDSLVGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQ 300 (788)
Q Consensus 221 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 300 (788)
+++++|++|++++|.+++.. .+..+++|++|++++|.+++ +| +. .+++|++|++++|.+++. + ++.+++|+
T Consensus 39 ~~l~~L~~L~Ls~n~l~~~~--~l~~l~~L~~L~Ls~n~l~~-~~--~~-~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~ 109 (457)
T 3bz5_A 39 EQLATLTSLDCHNSSITDMT--GIEKLTGLTKLICTSNNITT-LD--LS-QNTNLTYLACDSNKLTNL-D--VTPLTKLT 109 (457)
T ss_dssp HHHTTCCEEECCSSCCCCCT--TGGGCTTCSEEECCSSCCSC-CC--CT-TCTTCSEEECCSSCCSCC-C--CTTCTTCC
T ss_pred hHcCCCCEEEccCCCcccCh--hhcccCCCCEEEccCCcCCe-Ec--cc-cCCCCCEEECcCCCCcee-e--cCCCCcCC
Confidence 57788888888888877652 56777888888888888774 44 33 367888888888887753 2 77788888
Q ss_pred EEEccCCcCCCccchHHhhCCCCCcEEEccccccCccccccccCCCccCceeccCccCcccCCccCCCCCCCcEEEcccC
Q 003893 301 FLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNN 380 (788)
Q Consensus 301 ~L~L~~n~i~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n 380 (788)
+|++++|.++ .+| +..+++|++|++++|.+++. .+..+++|++|++++|...+.. .+..+++|++|++++|
T Consensus 110 ~L~L~~N~l~-~l~---~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n 180 (457)
T 3bz5_A 110 YLNCDTNKLT-KLD---VSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFN 180 (457)
T ss_dssp EEECCSSCCS-CCC---CTTCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSS
T ss_pred EEECCCCcCC-eec---CCCCCcCCEEECCCCcccee---ccccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCC
Confidence 8888888877 454 34577888888888887764 2566777888888887544343 3667777888888888
Q ss_pred cCCCCCCccccCCCCccEEEccCCeeccCchhhhhcccCCcEEeccCCcCCCCCCCCCCCCcccEEEccCcccccccCcc
Q 003893 381 SLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEG 460 (788)
Q Consensus 381 ~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~ 460 (788)
.+++ +| +..+++|+.|++++|.+++. .+..+++|+.|++++|++++. | ...+++|+.|++++|.+.+. +
T Consensus 181 ~l~~-l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~i-p-~~~l~~L~~L~l~~N~l~~~-~-- 249 (457)
T 3bz5_A 181 KITE-LD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTEI-D-VTPLTQLTYFDCSVNPLTEL-D-- 249 (457)
T ss_dssp CCCC-CC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSCC-C-CTTCTTCSEEECCSSCCSCC-C--
T ss_pred ccce-ec--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCccccc-C-ccccCCCCEEEeeCCcCCCc-C--
Confidence 7775 33 66777777777777777754 366677777777777777652 2 33455666666666655442 1
Q ss_pred cccccccccEEeCCCCccCCCCCccccCCcCCcEEEccCccCcccCcccccCCCCCCEEEccCCcCCccCcccccccchh
Q 003893 461 TFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLH 540 (788)
Q Consensus 461 ~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~ 540 (788)
...+++|+.|++++| +|+.|++++|.+.+.+| +..+++|+.|++++|+..+.+|...
T Consensus 250 -~~~l~~L~~L~l~~n--------------~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~~~------ 306 (457)
T 3bz5_A 250 -VSTLSKLTTLHCIQT--------------DLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDCQA------ 306 (457)
T ss_dssp -CTTCTTCCEEECTTC--------------CCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEECTT------
T ss_pred -HHHCCCCCEEeccCC--------------CCCEEECCCCccCCccc--ccccccCCEEECCCCcccceeccCC------
Confidence 334455555555543 34556666666555544 4567788888888877654443210
Q ss_pred hhccCCCCCCCcccceeecCCcccCcccccccceEeeecCceecccCCccCCCceEECCCCcccccCcccccccccCCeE
Q 003893 541 ERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTL 620 (788)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 620 (788)
+.|+.|++++ +++|+.|
T Consensus 307 --------------------------------------------------~~L~~L~l~~-------------~~~L~~L 323 (457)
T 3bz5_A 307 --------------------------------------------------AGITELDLSQ-------------NPKLVYL 323 (457)
T ss_dssp --------------------------------------------------CCCSCCCCTT-------------CTTCCEE
T ss_pred --------------------------------------------------CcceEechhh-------------cccCCEE
Confidence 1455555544 4789999
Q ss_pred eCCCCCCCCCCCcccCCCCCCCeeeCCCcccCccCchhhhcCCCCcEEecccCcCcccCCCCccccCCCCcCCcCCCCCC
Q 003893 621 NLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSGKIPERAAQFATFNESSYEGNPFL 700 (788)
Q Consensus 621 ~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~~~~~~Np~~ 700 (788)
++++|++++. + ++.+++|++|++++|++++ ++.|..|++++|.++|. .++..+..+++.+|.+.
T Consensus 324 ~L~~N~l~~l-~--l~~l~~L~~L~l~~N~l~~--------l~~L~~L~l~~n~l~g~-----~~~~~l~~l~l~~N~l~ 387 (457)
T 3bz5_A 324 YLNNTELTEL-D--VSHNTKLKSLSCVNAHIQD--------FSSVGKIPALNNNFEAE-----GQTITMPKETLTNNSLT 387 (457)
T ss_dssp ECTTCCCSCC-C--CTTCTTCSEEECCSSCCCB--------CTTGGGSSGGGTSEEEE-----EEEEECCCBCCBTTBEE
T ss_pred ECCCCccccc-c--cccCCcCcEEECCCCCCCC--------ccccccccccCCcEEec-----ceeeecCccccccCcEE
Confidence 9999999985 3 8899999999999999985 25677788999999886 35566777788887664
No 37
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=1.8e-32 Score=294.16 Aligned_cols=315 Identities=20% Similarity=0.184 Sum_probs=270.3
Q ss_pred CCCCCCEEEccCCcCCCccchHHhhCCCCCcEEEccccccCccccccccCCCccCceeccCccCcccCCccCCCCCCCcE
Q 003893 295 NMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQG 374 (788)
Q Consensus 295 ~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~ 374 (788)
.++++++|+++++.++ .+|..++..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|++
T Consensus 43 ~l~~l~~l~l~~~~l~-~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 121 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTV 121 (390)
T ss_dssp GGCCCSEEEEESCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred ccCCceEEEecCCchh-hCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCE
Confidence 4688999999999998 899888888999999999999999888888899999999999999999888888999999999
Q ss_pred EEcccCcCCCCCCccccCCCCccEEEccCCeeccCchhhhhcccCCcEEeccCCcCCCCCCCCCCCCcccEEEccCcccc
Q 003893 375 LFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLH 454 (788)
Q Consensus 375 L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~ 454 (788)
|++++|.+....+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++.
T Consensus 122 L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~--------------------- 180 (390)
T 3o6n_A 122 LVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV--------------------- 180 (390)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---------------------
T ss_pred EECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---------------------
Confidence 99999999865556678899999999999999888888888899999999999887521
Q ss_pred cccCcccccccccccEEeCCCCccCCCCCccccCCcCCcEEEccCccCcccCcccccCCCCCCEEEccCCcCCccCcccc
Q 003893 455 GQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCF 534 (788)
Q Consensus 455 ~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 534 (788)
.+..+++|++|++++|.+++ +...++|++|++++|.+... +.. ..++|++|++++|.+++. ..+
T Consensus 181 ------~~~~l~~L~~L~l~~n~l~~-----~~~~~~L~~L~l~~n~l~~~-~~~--~~~~L~~L~l~~n~l~~~--~~l 244 (390)
T 3o6n_A 181 ------DLSLIPSLFHANVSYNLLST-----LAIPIAVEELDASHNSINVV-RGP--VNVELTILKLQHNNLTDT--AWL 244 (390)
T ss_dssp ------CGGGCTTCSEEECCSSCCSE-----EECCSSCSEEECCSSCCCEE-ECC--CCSSCCEEECCSSCCCCC--GGG
T ss_pred ------ccccccccceeecccccccc-----cCCCCcceEEECCCCeeeec-ccc--ccccccEEECCCCCCccc--HHH
Confidence 24557889999999998863 34457899999999999854 332 357999999999999864 233
Q ss_pred cccchhhhccCCCCCCCcccceeecCCcccCcccccccceEeeecCceecccCCccCCCceEECCCCcccccCccccccc
Q 003893 535 DNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNL 614 (788)
Q Consensus 535 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l 614 (788)
...+ +|++|++++|.+++..|..|..+
T Consensus 245 ~~l~-----------------------------------------------------~L~~L~Ls~n~l~~~~~~~~~~l 271 (390)
T 3o6n_A 245 LNYP-----------------------------------------------------GLVEVDLSYNELEKIMYHPFVKM 271 (390)
T ss_dssp GGCT-----------------------------------------------------TCSEEECCSSCCCEEESGGGTTC
T ss_pred cCCC-----------------------------------------------------CccEEECCCCcCCCcChhHcccc
Confidence 3332 89999999999999989999999
Q ss_pred ccCCeEeCCCCCCCCCCCcccCCCCCCCeeeCCCcccCccCchhhhcCCCCcEEecccCcCcccCCCCccccCCCCcCCc
Q 003893 615 TKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSGKIPERAAQFATFNESSY 694 (788)
Q Consensus 615 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~~~~ 694 (788)
++|+.|+|++|++++ +|..+..+++|++|++++|+++ .+|..+..+++|+.|++++|+++... +..+++++.+++
T Consensus 272 ~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~~---~~~~~~L~~L~l 346 (390)
T 3o6n_A 272 QRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLK---LSTHHTLKNLTL 346 (390)
T ss_dssp SSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCCC---CCTTCCCSEEEC
T ss_pred ccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCccceeC---chhhccCCEEEc
Confidence 999999999999995 5666788999999999999999 57778889999999999999998653 467888999999
Q ss_pred CCCCCCCCCCC
Q 003893 695 EGNPFLCGPPL 705 (788)
Q Consensus 695 ~~Np~~C~~~~ 705 (788)
.+||+.|+|..
T Consensus 347 ~~N~~~~~~~~ 357 (390)
T 3o6n_A 347 SHNDWDCNSLR 357 (390)
T ss_dssp CSSCEEHHHHH
T ss_pred CCCCccchhHH
Confidence 99999998654
No 38
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=1.1e-31 Score=283.38 Aligned_cols=285 Identities=23% Similarity=0.320 Sum_probs=135.1
Q ss_pred ccCCCCCCEEEccCCcCCCccchHHhhCCCCCcEEEccccccCccccccccCCCccCceeccCccCcccCCccCCCCCCC
Q 003893 293 FGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSL 372 (788)
Q Consensus 293 ~~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L 372 (788)
+..+++|++|++++|.++ .++. +..+++|++|++++|.++.. ..+.++++|++|++++|.+.+.. . +..+++|
T Consensus 62 ~~~~~~L~~L~l~~n~i~-~~~~--~~~l~~L~~L~L~~n~i~~~--~~~~~l~~L~~L~l~~n~i~~~~-~-~~~l~~L 134 (347)
T 4fmz_A 62 IEYLTNLEYLNLNGNQIT-DISP--LSNLVKLTNLYIGTNKITDI--SALQNLTNLRELYLNEDNISDIS-P-LANLTKM 134 (347)
T ss_dssp GGGCTTCCEEECCSSCCC-CCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTCSEEECTTSCCCCCG-G-GTTCTTC
T ss_pred hhhcCCccEEEccCCccc-cchh--hhcCCcCCEEEccCCcccCc--hHHcCCCcCCEEECcCCcccCch-h-hccCCce
Confidence 333444444444444443 2322 22344444444444444332 12334444444444444444221 1 4444455
Q ss_pred cEEEcccCcCCCCCCccccCCCCccEEEccCCeeccCchhhhhcccCCcEEeccCCcCCCCCCCCCCCCcccEEEccCcc
Q 003893 373 QGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNM 452 (788)
Q Consensus 373 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~ 452 (788)
++|++++|...... ..+..+++|++|++++|.+.+..+ +..+++|+.|++++|.+.+.
T Consensus 135 ~~L~l~~n~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~~------------------- 192 (347)
T 4fmz_A 135 YSLNLGANHNLSDL-SPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDI------------------- 192 (347)
T ss_dssp CEEECTTCTTCCCC-GGGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCCCC-------------------
T ss_pred eEEECCCCCCcccc-cchhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCccccc-------------------
Confidence 55555554333222 224445555555555555443322 44555555555555554311
Q ss_pred cccccCcccccccccccEEeCCCCccCCCCCccccCCcCCcEEEccCccCcccCcccccCCCCCCEEEccCCcCCccCcc
Q 003893 453 LHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPS 532 (788)
Q Consensus 453 ~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 532 (788)
+ .+..+++|++|++++|.+.+..+ +..+++|++|++++|.+++..+ +..+++|++|++++|.+++. .
T Consensus 193 -----~--~~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~ 259 (347)
T 4fmz_A 193 -----S--PLASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI--N 259 (347)
T ss_dssp -----G--GGGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--G
T ss_pred -----c--cccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCC--h
Confidence 1 13444455555555555543222 4445555555555555543222 45555555555555555432 1
Q ss_pred cccccchhhhccCCCCCCCcccceeecCCcccCcccccccceEeeecCceecccCCccCCCceEECCCCcccccCccccc
Q 003893 533 CFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIG 612 (788)
Q Consensus 533 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~ 612 (788)
.+... ++|+.|++++|.+++. ..+.
T Consensus 260 ~~~~l-----------------------------------------------------~~L~~L~l~~n~l~~~--~~~~ 284 (347)
T 4fmz_A 260 AVKDL-----------------------------------------------------TKLKMLNVGSNQISDI--SVLN 284 (347)
T ss_dssp GGTTC-----------------------------------------------------TTCCEEECCSSCCCCC--GGGG
T ss_pred hHhcC-----------------------------------------------------CCcCEEEccCCccCCC--hhhc
Confidence 11111 1455555555555533 2355
Q ss_pred ccccCCeEeCCCCCCCCCCCcccCCCCCCCeeeCCCcccCccCchhhhcCCCCcEEecccCcCc
Q 003893 613 NLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLS 676 (788)
Q Consensus 613 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~ 676 (788)
.+++|+.|++++|++++..|..|..+++|++|++++|++++..| +..+++|+.|++++|+++
T Consensus 285 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 285 NLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp GCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred CCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence 56666666666666665555556666666666666666664433 555666666666666554
No 39
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=2.3e-31 Score=280.94 Aligned_cols=305 Identities=26% Similarity=0.349 Sum_probs=207.6
Q ss_pred CCCCcCEEEccCCcCcccCChhhhhcCCCCcEEEeeCCcCCCCCCccccCCCCCCEEEccCCcCCCccchHHhhCCCCCc
Q 003893 246 SHKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLR 325 (788)
Q Consensus 246 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~ 325 (788)
.+++|++|+++++.+. .++. + ..+++|++|++++|.+++. +. +..+++|++|++++|.++ .++. +..+++|+
T Consensus 42 ~l~~L~~L~l~~~~i~-~~~~-~-~~~~~L~~L~l~~n~i~~~-~~-~~~l~~L~~L~L~~n~i~-~~~~--~~~l~~L~ 113 (347)
T 4fmz_A 42 ELESITKLVVAGEKVA-SIQG-I-EYLTNLEYLNLNGNQITDI-SP-LSNLVKLTNLYIGTNKIT-DISA--LQNLTNLR 113 (347)
T ss_dssp HHTTCSEEECCSSCCC-CCTT-G-GGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCC-CCGG--GTTCTTCS
T ss_pred hcccccEEEEeCCccc-cchh-h-hhcCCccEEEccCCccccc-hh-hhcCCcCCEEEccCCccc-CchH--HcCCCcCC
Confidence 3445555555555554 3332 2 2255666666666665532 22 566666666666666665 4442 33466666
Q ss_pred EEEccccccCccccccccCCCccCceeccCccCcccCCccCCCCCCCcEEEcccCcCCCCCCccccCCCCccEEEccCCe
Q 003893 326 SLALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNH 405 (788)
Q Consensus 326 ~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~ 405 (788)
+|++++|.+.+..+ +..+++|++|++++|...... ..+..+++|++|++++|.+.+..+ +..+++|++|++++|.
T Consensus 114 ~L~l~~n~i~~~~~--~~~l~~L~~L~l~~n~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~ 188 (347)
T 4fmz_A 114 ELYLNEDNISDISP--LANLTKMYSLNLGANHNLSDL-SPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQ 188 (347)
T ss_dssp EEECTTSCCCCCGG--GTTCTTCCEEECTTCTTCCCC-GGGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSC
T ss_pred EEECcCCcccCchh--hccCCceeEEECCCCCCcccc-cchhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCc
Confidence 66666666654433 556667777777776544332 336777777777777777764433 6677788888888887
Q ss_pred eccCchhhhhcccCCcEEeccCCcCCCCCCCCCCCCcccEEEccCcccccccCcccccccccccEEeCCCCccCCCCCcc
Q 003893 406 IEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDR 485 (788)
Q Consensus 406 ~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~ 485 (788)
+.+..+ +..+++|+.|++++|.+.+. + .+..+++|++|++++|.+++..+
T Consensus 189 l~~~~~--~~~l~~L~~L~l~~n~l~~~------------------------~--~~~~~~~L~~L~l~~n~l~~~~~-- 238 (347)
T 4fmz_A 189 IEDISP--LASLTSLHYFTAYVNQITDI------------------------T--PVANMTRLNSLKIGNNKITDLSP-- 238 (347)
T ss_dssp CCCCGG--GGGCTTCCEEECCSSCCCCC------------------------G--GGGGCTTCCEEECCSSCCCCCGG--
T ss_pred cccccc--ccCCCccceeecccCCCCCC------------------------c--hhhcCCcCCEEEccCCccCCCcc--
Confidence 765443 67788888888888876521 1 25667778888888888775433
Q ss_pred ccCCcCCcEEEccCccCcccCcccccCCCCCCEEEccCCcCCccCcccccccchhhhccCCCCCCCcccceeecCCcccC
Q 003893 486 VDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVD 565 (788)
Q Consensus 486 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 565 (788)
+..+++|++|++++|.+++. ..+..+++|++|++++|++++. + .+...
T Consensus 239 ~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~-~-~~~~l---------------------------- 286 (347)
T 4fmz_A 239 LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI-S-VLNNL---------------------------- 286 (347)
T ss_dssp GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC-G-GGGGC----------------------------
T ss_pred hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC-h-hhcCC----------------------------
Confidence 77788888888888888743 4577888888888888888754 1 23222
Q ss_pred cccccccceEeeecCceecccCCccCCCceEECCCCcccccCcccccccccCCeEeCCCCCCCCCCCcccCCCCCCCeee
Q 003893 566 PKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLD 645 (788)
Q Consensus 566 ~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 645 (788)
++|+.|++++|.+++..+..+..+++|+.|++++|++++..| +..+++|++|+
T Consensus 287 -------------------------~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~ 339 (347)
T 4fmz_A 287 -------------------------SQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSAD 339 (347)
T ss_dssp -------------------------TTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEES
T ss_pred -------------------------CCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccceee
Confidence 278999999999988888889999999999999999997666 88899999999
Q ss_pred CCCcccC
Q 003893 646 LSYNKLS 652 (788)
Q Consensus 646 Ls~N~l~ 652 (788)
+++|+|+
T Consensus 340 l~~N~i~ 346 (347)
T 4fmz_A 340 FANQVIK 346 (347)
T ss_dssp SSCC---
T ss_pred hhhhccc
Confidence 9999886
No 40
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=1.8e-32 Score=283.58 Aligned_cols=258 Identities=33% Similarity=0.527 Sum_probs=221.5
Q ss_pred CCCcEEEcccCcCCC--CCCccccCCCCccEEEccC-CeeccCchhhhhcccCCcEEeccCCcCCCCCCCCCCCCcccEE
Q 003893 370 SSLQGLFLSNNSLSG--KIPRWLGNLTVLRHIIMPK-NHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQV 446 (788)
Q Consensus 370 ~~L~~L~l~~n~l~~--~~~~~l~~l~~L~~L~l~~-n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L 446 (788)
.+++.|++++|.+.+ .+|..+..+++|++|++++ |.+.+..|..+..+++|++|++++|.+.+
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~-------------- 115 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSG-------------- 115 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEE--------------
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCC--------------
Confidence 467777777777776 6677777777777777774 77777777777777777777777776653
Q ss_pred EccCcccccccCcccccccccccEEeCCCCccCCCCCccccCCcCCcEEEccCccCcccCcccccCCC-CCCEEEccCCc
Q 003893 447 HLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLN-QLQLLDLSNNN 525 (788)
Q Consensus 447 ~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~L~~n~ 525 (788)
.+|. .+.++++|++|++++|.+++..|..+..+++|++|++++|++++..|..+..++ +|++|++++|+
T Consensus 116 ---------~~p~-~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~ 185 (313)
T 1ogq_A 116 ---------AIPD-FLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNR 185 (313)
T ss_dssp ---------ECCG-GGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSE
T ss_pred ---------cCCH-HHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCe
Confidence 3343 678888999999999999888888999999999999999999888899999988 99999999999
Q ss_pred CCccCcccccccchhhhccCCCCCCCcccceeecCCcccCcccccccceEeeecCceecccCCccCCCceEECCCCcccc
Q 003893 526 LHGHIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIG 605 (788)
Q Consensus 526 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~ 605 (788)
+++..|..+... .|+.|++++|.+++
T Consensus 186 l~~~~~~~~~~l------------------------------------------------------~L~~L~Ls~N~l~~ 211 (313)
T 1ogq_A 186 LTGKIPPTFANL------------------------------------------------------NLAFVDLSRNMLEG 211 (313)
T ss_dssp EEEECCGGGGGC------------------------------------------------------CCSEEECCSSEEEE
T ss_pred eeccCChHHhCC------------------------------------------------------cccEEECcCCcccC
Confidence 988877766543 38899999999999
Q ss_pred cCcccccccccCCeEeCCCCCCCCCCCcccCCCCCCCeeeCCCcccCccCchhhhcCCCCcEEecccCcCcccCCCCccc
Q 003893 606 HIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSGKIPERAAQ 685 (788)
Q Consensus 606 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~ 685 (788)
..|..+..+++|+.|+|++|++++..|. +..+++|++|++++|++++.+|..+..+++|+.|++++|++++.+|.. .+
T Consensus 212 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~ 289 (313)
T 1ogq_A 212 DASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GN 289 (313)
T ss_dssp CCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TT
T ss_pred cCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-cc
Confidence 9999999999999999999999976665 888999999999999999999999999999999999999999999987 88
Q ss_pred cCCCCcCCcCCCCCCCCCCCCC
Q 003893 686 FATFNESSYEGNPFLCGPPLPI 707 (788)
Q Consensus 686 ~~~l~~~~~~~Np~~C~~~~~~ 707 (788)
+++++.+++.+||+.|+.+...
T Consensus 290 l~~L~~l~l~~N~~lc~~p~~~ 311 (313)
T 1ogq_A 290 LQRFDVSAYANNKCLCGSPLPA 311 (313)
T ss_dssp GGGSCGGGTCSSSEEESTTSSC
T ss_pred ccccChHHhcCCCCccCCCCCC
Confidence 9999999999999999977654
No 41
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=9.3e-32 Score=304.40 Aligned_cols=314 Identities=20% Similarity=0.190 Sum_probs=271.5
Q ss_pred CCCCCCEEEccCCcCCCccchHHhhCCCCCcEEEccccccCccccccccCCCccCceeccCccCcccCCccCCCCCCCcE
Q 003893 295 NMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQG 374 (788)
Q Consensus 295 ~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~ 374 (788)
.+.+++.+++++|.+. .+|..++.++++|++|++++|.+.+..+..|..+++|++|++++|.+.+..+..|..+++|++
T Consensus 49 ~l~~l~~l~l~~~~l~-~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 127 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTV 127 (597)
T ss_dssp GGCCCSEEEESSCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred cCCCceEEEeeCCCCC-CcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCE
Confidence 3578999999999998 889888888999999999999999888888999999999999999999888888899999999
Q ss_pred EEcccCcCCCCCCccccCCCCccEEEccCCeeccCchhhhhcccCCcEEeccCCcCCCCCCCCCCCCcccEEEccCcccc
Q 003893 375 LFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLH 454 (788)
Q Consensus 375 L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~ 454 (788)
|++++|.+.+..+..|..+++|++|++++|.+.+..+..|..+++|+.|++++|.+.+.
T Consensus 128 L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~--------------------- 186 (597)
T 3oja_B 128 LVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV--------------------- 186 (597)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC---------------------
T ss_pred EEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc---------------------
Confidence 99999999976666678999999999999999988888899999999999999887621
Q ss_pred cccCcccccccccccEEeCCCCccCCCCCccccCCcCCcEEEccCccCcccCcccccCCCCCCEEEccCCcCCccCcccc
Q 003893 455 GQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCF 534 (788)
Q Consensus 455 ~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 534 (788)
.+..+++|+.|++++|.+.+ +...++|+.|++++|.+....+. + .++|+.|++++|.+++. ..+
T Consensus 187 ------~~~~l~~L~~L~l~~n~l~~-----l~~~~~L~~L~ls~n~l~~~~~~-~--~~~L~~L~L~~n~l~~~--~~l 250 (597)
T 3oja_B 187 ------DLSLIPSLFHANVSYNLLST-----LAIPIAVEELDASHNSINVVRGP-V--NVELTILKLQHNNLTDT--AWL 250 (597)
T ss_dssp ------CGGGCTTCSEEECCSSCCSE-----EECCTTCSEEECCSSCCCEEECS-C--CSCCCEEECCSSCCCCC--GGG
T ss_pred ------ChhhhhhhhhhhcccCcccc-----ccCCchhheeeccCCcccccccc-c--CCCCCEEECCCCCCCCC--hhh
Confidence 24557789999999998873 34567899999999999854332 2 36899999999999863 333
Q ss_pred cccchhhhccCCCCCCCcccceeecCCcccCcccccccceEeeecCceecccCCccCCCceEECCCCcccccCccccccc
Q 003893 535 DNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNL 614 (788)
Q Consensus 535 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l 614 (788)
..++ +|+.|++++|.+++..|..|..+
T Consensus 251 ~~l~-----------------------------------------------------~L~~L~Ls~N~l~~~~~~~~~~l 277 (597)
T 3oja_B 251 LNYP-----------------------------------------------------GLVEVDLSYNELEKIMYHPFVKM 277 (597)
T ss_dssp GGCT-----------------------------------------------------TCSEEECCSSCCCEEESGGGTTC
T ss_pred ccCC-----------------------------------------------------CCCEEECCCCccCCCCHHHhcCc
Confidence 3333 89999999999999999999999
Q ss_pred ccCCeEeCCCCCCCCCCCcccCCCCCCCeeeCCCcccCccCchhhhcCCCCcEEecccCcCcccCCCCccccCCCCcCCc
Q 003893 615 TKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSGKIPERAAQFATFNESSY 694 (788)
Q Consensus 615 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~~~~ 694 (788)
++|+.|+|++|++++ +|..+..+++|++|+|++|.++ .+|..+..+++|+.|++++|++++.. +..++.+..+++
T Consensus 278 ~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~~---~~~~~~L~~L~l 352 (597)
T 3oja_B 278 QRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLK---LSTHHTLKNLTL 352 (597)
T ss_dssp SSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCCC---CCTTCCCSEEEC
T ss_pred cCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCcC---hhhcCCCCEEEe
Confidence 999999999999996 5677788999999999999999 67888899999999999999998763 456788999999
Q ss_pred CCCCCCCCCC
Q 003893 695 EGNPFLCGPP 704 (788)
Q Consensus 695 ~~Np~~C~~~ 704 (788)
.+|||.|+|.
T Consensus 353 ~~N~~~~~~~ 362 (597)
T 3oja_B 353 SHNDWDCNSL 362 (597)
T ss_dssp CSSCEEHHHH
T ss_pred eCCCCCChhH
Confidence 9999999864
No 42
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.97 E-value=9.2e-30 Score=266.27 Aligned_cols=291 Identities=23% Similarity=0.291 Sum_probs=219.0
Q ss_pred CCCEEEccCCcCCCccchHHhhCCCCCcEEEccccccCccccccccCCCccCceeccCccCcccCCccCCCCCCCcEEEc
Q 003893 298 FLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFL 377 (788)
Q Consensus 298 ~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l 377 (788)
+++.++++++.++ .+|..+ .+++++|++++|.+++..+..+.++++|++|++++|.+.+..|..|..+++|++|++
T Consensus 32 ~l~~l~~~~~~l~-~lp~~~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (330)
T 1xku_A 32 HLRVVQCSDLGLE-KVPKDL---PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL 107 (330)
T ss_dssp ETTEEECTTSCCC-SCCCSC---CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred CCeEEEecCCCcc-ccCccC---CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEEC
Confidence 5667777777666 666544 256777777777777766666777788888888888877666777888888888888
Q ss_pred ccCcCCCCCCccccCCCCccEEEccCCeeccCchhhhhcccCCcEEeccCCcCCCCCCCCCCCCcccEEEccCccccccc
Q 003893 378 SNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQL 457 (788)
Q Consensus 378 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~ 457 (788)
++|.++ .+|..+. ++|++|++++|.+.+..+..+.++++|+.|++++|.+... ..
T Consensus 108 s~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~----------------------~~ 162 (330)
T 1xku_A 108 SKNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSS----------------------GI 162 (330)
T ss_dssp CSSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGG----------------------GB
T ss_pred CCCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCcc----------------------Cc
Confidence 888877 3444333 6788888888888877777888888888888888877521 12
Q ss_pred CcccccccccccEEeCCCCccCCCCCccccCCcCCcEEEccCccCcccCcccccCCCCCCEEEccCCcCCccCccccccc
Q 003893 458 KEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNT 537 (788)
Q Consensus 458 ~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~ 537 (788)
....+.++++|++|++++|.++. +|..+. ++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+
T Consensus 163 ~~~~~~~l~~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l 239 (330)
T 1xku_A 163 ENGAFQGMKKLSYIRIADTNITT-IPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANT 239 (330)
T ss_dssp CTTGGGGCTTCCEEECCSSCCCS-CCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGS
T ss_pred ChhhccCCCCcCEEECCCCcccc-CCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCC
Confidence 22367778888888888888874 444433 788899999998887778888888899999999998887766666554
Q ss_pred chhhhccCCCCCCCcccceeecCCcccCcccccccceEeeecCceecccCCccCCCceEECCCCcccccCcccccccccC
Q 003893 538 TLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKI 617 (788)
Q Consensus 538 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L 617 (788)
+ +|++|++++|.++ .+|..+..+++|
T Consensus 240 ~-----------------------------------------------------~L~~L~L~~N~l~-~lp~~l~~l~~L 265 (330)
T 1xku_A 240 P-----------------------------------------------------HLRELHLNNNKLV-KVPGGLADHKYI 265 (330)
T ss_dssp T-----------------------------------------------------TCCEEECCSSCCS-SCCTTTTTCSSC
T ss_pred C-----------------------------------------------------CCCEEECCCCcCc-cCChhhccCCCc
Confidence 4 7888899888888 667778888999
Q ss_pred CeEeCCCCCCCCCCCcccCC------CCCCCeeeCCCcccCc--cCchhhhcCCCCcEEecccCc
Q 003893 618 QTLNLSHNNLAGPIPSTFSN------LRNIESLDLSYNKLSW--KIPYQLVELNTLAVFSVAYNN 674 (788)
Q Consensus 618 ~~L~Ls~N~l~~~~~~~~~~------l~~L~~L~Ls~N~l~~--~~~~~l~~l~~L~~L~l~~N~ 674 (788)
++|++++|++++..+..|.. .++|+.|++++|++.. ..|..|..+.+++.+++++|+
T Consensus 266 ~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 266 QVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp CEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred CEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence 99999999998877777754 3778889999998863 556788888888888888874
No 43
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.97 E-value=5.2e-30 Score=268.25 Aligned_cols=290 Identities=23% Similarity=0.278 Sum_probs=204.3
Q ss_pred CCCEEEccCCcCCCccchHHhhCCCCCcEEEccccccCccccccccCCCccCceeccCccCcccCCccCCCCCCCcEEEc
Q 003893 298 FLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFL 377 (788)
Q Consensus 298 ~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l 377 (788)
+++.++++++.++ .+|..++ ++|++|++++|.+.+..+..+.++++|++|++++|.+.+..+..|..+++|++|++
T Consensus 34 ~l~~l~~~~~~l~-~ip~~~~---~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 109 (332)
T 2ft3_A 34 HLRVVQCSDLGLK-AVPKEIS---PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYI 109 (332)
T ss_dssp ETTEEECCSSCCS-SCCSCCC---TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEEC
T ss_pred cCCEEECCCCCcc-ccCCCCC---CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEEC
Confidence 5667777777766 6665542 56777777777777666666777777777777777777666777777777777777
Q ss_pred ccCcCCCCCCccccCCCCccEEEccCCeeccCchhhhhcccCCcEEeccCCcCCCCCCCCCCCCcccEEEccCccccccc
Q 003893 378 SNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQL 457 (788)
Q Consensus 378 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~ 457 (788)
++|.+. .+|..+. ++|++|++++|.+.+..+..+.++++|+.|++++|.+... ..
T Consensus 110 ~~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~----------------------~~ 164 (332)
T 2ft3_A 110 SKNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENS----------------------GF 164 (332)
T ss_dssp CSSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGG----------------------GS
T ss_pred CCCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccC----------------------CC
Confidence 777776 3443333 6777788887777766666677778888888887776421 01
Q ss_pred CcccccccccccEEeCCCCccCCCCCccccCCcCCcEEEccCccCcccCcccccCCCCCCEEEccCCcCCccCccccccc
Q 003893 458 KEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNT 537 (788)
Q Consensus 458 ~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~ 537 (788)
....+..+ +|++|++++|.+++ +|..+. ++|++|++++|.+++..+..+..+++|++|++++|++.+..+..+..+
T Consensus 165 ~~~~~~~l-~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l 240 (332)
T 2ft3_A 165 EPGAFDGL-KLNYLRISEAKLTG-IPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFL 240 (332)
T ss_dssp CTTSSCSC-CCSCCBCCSSBCSS-CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGC
T ss_pred CcccccCC-ccCEEECcCCCCCc-cCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCC
Confidence 11244444 67777777777774 443332 677888888888776666777778888888888888877666555544
Q ss_pred chhhhccCCCCCCCcccceeecCCcccCcccccccceEeeecCceecccCCccCCCceEECCCCcccccCcccccccccC
Q 003893 538 TLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKI 617 (788)
Q Consensus 538 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L 617 (788)
. +|++|++++|+++ .+|..+..+++|
T Consensus 241 ~-----------------------------------------------------~L~~L~L~~N~l~-~lp~~l~~l~~L 266 (332)
T 2ft3_A 241 P-----------------------------------------------------TLRELHLDNNKLS-RVPAGLPDLKLL 266 (332)
T ss_dssp T-----------------------------------------------------TCCEEECCSSCCC-BCCTTGGGCTTC
T ss_pred C-----------------------------------------------------CCCEEECCCCcCe-ecChhhhcCccC
Confidence 4 6788888888887 566778888888
Q ss_pred CeEeCCCCCCCCCCCcccCCC------CCCCeeeCCCcccC--ccCchhhhcCCCCcEEecccCc
Q 003893 618 QTLNLSHNNLAGPIPSTFSNL------RNIESLDLSYNKLS--WKIPYQLVELNTLAVFSVAYNN 674 (788)
Q Consensus 618 ~~L~Ls~N~l~~~~~~~~~~l------~~L~~L~Ls~N~l~--~~~~~~l~~l~~L~~L~l~~N~ 674 (788)
+.|++++|++++..+..|... ++|+.|++++|++. ...|..|..+++|+.+++++|+
T Consensus 267 ~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 267 QVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp CEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred CEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 888888888887777666543 56888888888887 5667778888888888888874
No 44
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.97 E-value=2.6e-33 Score=308.47 Aligned_cols=363 Identities=19% Similarity=0.139 Sum_probs=241.9
Q ss_pred CCcCEEEccCCcCcccCChhhhhcCCCCcEEEeeCCcCCC----CCCccccCCCCCCEEEccCCcCCCccchHHhhCCC-
Q 003893 248 KQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDG----SIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCV- 322 (788)
Q Consensus 248 ~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~l~- 322 (788)
++|++|++++|.+++.....++..+++|++|++++|.++. .++..+..+++|++|++++|.+.+..+..++..++
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~ 82 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT 82 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence 4678888888888644444445568899999999998874 23566778899999999999887555556665566
Q ss_pred ---CCcEEEccccccCcc----ccccccCCCccCceeccCccCcccCCcc-----CCCCCCCcEEEcccCcCCCCC----
Q 003893 323 ---SLRSLALSNNNLEGH----MFSRNFNLTNLIWLQLEGNHFVGEIPQS-----LSKCSSLQGLFLSNNSLSGKI---- 386 (788)
Q Consensus 323 ---~L~~L~l~~n~i~~~----~~~~~~~l~~L~~L~l~~n~~~~~~~~~-----~~~l~~L~~L~l~~n~l~~~~---- 386 (788)
+|++|++++|.++.. .+..+..+++|++|++++|.+....+.. ....++|++|++++|.+++..
T Consensus 83 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l 162 (461)
T 1z7x_W 83 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPL 162 (461)
T ss_dssp TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred CCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHH
Confidence 699999999888743 3566777888888888888876433322 223567888888888777533
Q ss_pred CccccCCCCccEEEccCCeeccCchhhhh-----cccCCcEEeccCCcCCCCCCCCCCCCcccEEEccCcccccccCccc
Q 003893 387 PRWLGNLTVLRHIIMPKNHIEGPIPLEFC-----QLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGT 461 (788)
Q Consensus 387 ~~~l~~l~~L~~L~l~~n~~~~~~~~~~~-----~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~ 461 (788)
+..+..+++|++|++++|.+....+..+. ..++|++|++++|.++..... .++. .
T Consensus 163 ~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~-------------------~l~~-~ 222 (461)
T 1z7x_W 163 ASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCR-------------------DLCG-I 222 (461)
T ss_dssp HHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHH-------------------HHHH-H
T ss_pred HHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHH-------------------HHHH-H
Confidence 34455567888888888877654444433 245777777777766531100 1122 4
Q ss_pred ccccccccEEeCCCCccCCCC-----CccccCCcCCcEEEccCccCccc----CcccccCCCCCCEEEccCCcCCccCcc
Q 003893 462 FFNCLTLMILDLSYNHLNGNI-----PDRVDGLSQLSYLILAHNNLEGE----VPIQLCRLNQLQLLDLSNNNLHGHIPS 532 (788)
Q Consensus 462 ~~~~~~L~~L~l~~n~i~~~~-----~~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~~~~ 532 (788)
+..+++|++|++++|.+++.. +..+..+++|++|++++|.++.. ++..+..+++|++|++++|.+.+..+.
T Consensus 223 l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~ 302 (461)
T 1z7x_W 223 VASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGAR 302 (461)
T ss_dssp HHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHH
T ss_pred HHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHH
Confidence 556677778888777765422 12223467788888888877743 455566678888888888877644333
Q ss_pred cccccchhhhccCCCCCCCcccceeecCCcccCcccccccceEeeecCceecccCCccCCCceEECCCCccccc----Cc
Q 003893 533 CFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGH----IP 608 (788)
Q Consensus 533 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~----~~ 608 (788)
.+...- ...+++|++|++++|.+++. ++
T Consensus 303 ~l~~~l------------------------------------------------~~~~~~L~~L~L~~n~l~~~~~~~l~ 334 (461)
T 1z7x_W 303 LLCETL------------------------------------------------LEPGCQLESLWVKSCSFTAACCSHFS 334 (461)
T ss_dssp HHHHHH------------------------------------------------TSTTCCCCEEECTTSCCBGGGHHHHH
T ss_pred HHHHHh------------------------------------------------ccCCccceeeEcCCCCCchHHHHHHH
Confidence 322110 00113678888888887754 34
Q ss_pred ccccccccCCeEeCCCCCCCCCCCcccCC-----CCCCCeeeCCCcccCc----cCchhhhcCCCCcEEecccCcCccc
Q 003893 609 PQIGNLTKIQTLNLSHNNLAGPIPSTFSN-----LRNIESLDLSYNKLSW----KIPYQLVELNTLAVFSVAYNNLSGK 678 (788)
Q Consensus 609 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~-----l~~L~~L~Ls~N~l~~----~~~~~l~~l~~L~~L~l~~N~l~~~ 678 (788)
..+..+++|++|++++|++++..+..+.. .++|++|++++|+++. .+|..+..+++|++|++++|++++.
T Consensus 335 ~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~ 413 (461)
T 1z7x_W 335 SVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDA 413 (461)
T ss_dssp HHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHH
T ss_pred HHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHH
Confidence 55666788888888888776544433332 5688888888888875 5677777788888888888887653
No 45
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.97 E-value=1.1e-29 Score=265.74 Aligned_cols=249 Identities=26% Similarity=0.294 Sum_probs=130.9
Q ss_pred CcCEEEccCCcCcccCChhhhhcCCCCcEEEeeCCcCCCCCCccccCCCCCCEEEccCCcCCCccchHHhhCCCCCcEEE
Q 003893 249 QLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLA 328 (788)
Q Consensus 249 ~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~ 328 (788)
.++.++++++.++ .+|..+. +++++|++++|.+.+..+..|..+++|++|++++|.++ .++...+.++++|++|+
T Consensus 34 ~l~~l~~~~~~l~-~ip~~~~---~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~ 108 (332)
T 2ft3_A 34 HLRVVQCSDLGLK-AVPKEIS---PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKIS-KIHEKAFSPLRKLQKLY 108 (332)
T ss_dssp ETTEEECCSSCCS-SCCSCCC---TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC-EECGGGSTTCTTCCEEE
T ss_pred cCCEEECCCCCcc-ccCCCCC---CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccC-ccCHhHhhCcCCCCEEE
Confidence 4556666666554 4554332 35556666665555444455555555555555555555 33222223455555555
Q ss_pred ccccccCccccccccCCCccCceeccCccCcccCCccCCCCCCCcEEEcccCcCCCCCCccccCCCCccEEEccCCeecc
Q 003893 329 LSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEG 408 (788)
Q Consensus 329 l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~ 408 (788)
+++|.++.. |..+. ++|++|++++|.+....+..+..+++|++|++++|.+..
T Consensus 109 L~~n~l~~l-------------------------~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~ 161 (332)
T 2ft3_A 109 ISKNHLVEI-------------------------PPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLEN 161 (332)
T ss_dssp CCSSCCCSC-------------------------CSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBG
T ss_pred CCCCcCCcc-------------------------Ccccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCcccc
Confidence 555554432 22222 445555555555554444445555555555555555532
Q ss_pred --CchhhhhcccCCcEEeccCCcCCCCCCCCCCCCcccEEEccCcccccccCcccccccccccEEeCCCCccCCCCCccc
Q 003893 409 --PIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRV 486 (788)
Q Consensus 409 --~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~ 486 (788)
..+..+..+ +|+.|++++|.+++...... ++|++|++++|.+.+..+ ..+..+++|++|++++|++++..+..+
T Consensus 162 ~~~~~~~~~~l-~L~~L~l~~n~l~~l~~~~~--~~L~~L~l~~n~i~~~~~-~~l~~l~~L~~L~L~~N~l~~~~~~~~ 237 (332)
T 2ft3_A 162 SGFEPGAFDGL-KLNYLRISEAKLTGIPKDLP--ETLNELHLDHNKIQAIEL-EDLLRYSKLYRLGLGHNQIRMIENGSL 237 (332)
T ss_dssp GGSCTTSSCSC-CCSCCBCCSSBCSSCCSSSC--SSCSCCBCCSSCCCCCCT-TSSTTCTTCSCCBCCSSCCCCCCTTGG
T ss_pred CCCCcccccCC-ccCEEECcCCCCCccCcccc--CCCCEEECCCCcCCccCH-HHhcCCCCCCEEECCCCcCCcCChhHh
Confidence 344444444 56666666665553221111 334444444444332222 255666666666666666666555566
Q ss_pred cCCcCCcEEEccCccCcccCcccccCCCCCCEEEccCCcCCccCcccc
Q 003893 487 DGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCF 534 (788)
Q Consensus 487 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 534 (788)
..+++|++|++++|+++ .+|..+..+++|++|++++|++++..+..|
T Consensus 238 ~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~ 284 (332)
T 2ft3_A 238 SFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDF 284 (332)
T ss_dssp GGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSS
T ss_pred hCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHc
Confidence 66666666666666666 455556666666666666666665554444
No 46
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.97 E-value=3.5e-29 Score=261.87 Aligned_cols=288 Identities=19% Similarity=0.231 Sum_probs=170.2
Q ss_pred ccCceeccCccCcccCCccCCCCCCCcEEEcccCcCCCCCCccccCCCCccEEEccCCeeccCchhhhhcccCCcEEecc
Q 003893 347 NLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDIS 426 (788)
Q Consensus 347 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~ 426 (788)
+++.++++++.+. .+|..+. +.++.|++++|.+++..+..+.++++|++|++++|.+.+..|..|..+++|++|+++
T Consensus 32 ~l~~l~~~~~~l~-~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 108 (330)
T 1xku_A 32 HLRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS 108 (330)
T ss_dssp ETTEEECTTSCCC-SCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CCeEEEecCCCcc-ccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECC
Confidence 3444444444444 2333222 345555555555554444455555555555555555555555555556666666666
Q ss_pred CCcCCCCCCCCCCCCcccEEEccCcccccccCcccccccccccEEeCCCCccCC--CCCccccCCcCCcEEEccCccCcc
Q 003893 427 DNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNG--NIPDRVDGLSQLSYLILAHNNLEG 504 (788)
Q Consensus 427 ~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~i~~--~~~~~~~~l~~L~~L~L~~n~l~~ 504 (788)
+|.++......+ ++|++|++++|.+.+ ++...+.++++|++|++++|.+.. ..+..+.++++|++|++++|.++.
T Consensus 109 ~n~l~~l~~~~~--~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~ 185 (330)
T 1xku_A 109 KNQLKELPEKMP--KTLQELRVHENEITK-VRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT 185 (330)
T ss_dssp SSCCSBCCSSCC--TTCCEEECCSSCCCB-BCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS
T ss_pred CCcCCccChhhc--ccccEEECCCCcccc-cCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcccc
Confidence 665542222111 344444444444432 333356777777777777777753 455667777777777777777763
Q ss_pred cCcccccCCCCCCEEEccCCcCCccCcccccccchhhhccCCCCCCCcccceeecCCcccCcccccccceEeeecCceec
Q 003893 505 EVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYT 584 (788)
Q Consensus 505 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~ 584 (788)
+|..+. ++|++|++++|++++..+..+..+.
T Consensus 186 -l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~---------------------------------------------- 216 (330)
T 1xku_A 186 -IPQGLP--PSLTELHLDGNKITKVDAASLKGLN---------------------------------------------- 216 (330)
T ss_dssp -CCSSCC--TTCSEEECTTSCCCEECTGGGTTCT----------------------------------------------
T ss_pred -CCcccc--ccCCEEECCCCcCCccCHHHhcCCC----------------------------------------------
Confidence 343332 6777777777777766665555444
Q ss_pred ccCCccCCCceEECCCCcccccCcccccccccCCeEeCCCCCCCCCCCcccCCCCCCCeeeCCCcccCccCchhhhc---
Q 003893 585 YQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVE--- 661 (788)
Q Consensus 585 ~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~--- 661 (788)
+|++|++++|.+++..+..+..+++|++|+|++|+++ .+|..+..+++|++|++++|++++..+..|..
T Consensus 217 -------~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~ 288 (330)
T 1xku_A 217 -------NLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGY 288 (330)
T ss_dssp -------TCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSC
T ss_pred -------CCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCccc
Confidence 6777777777777666666777777777777777777 45666777777777777777777655555533
Q ss_pred ---CCCCcEEecccCcCcc--cCCCCccccCCCCcCCcCCC
Q 003893 662 ---LNTLAVFSVAYNNLSG--KIPERAAQFATFNESSYEGN 697 (788)
Q Consensus 662 ---l~~L~~L~l~~N~l~~--~~~~~~~~~~~l~~~~~~~N 697 (788)
...++.+++++|++.. ..|..+..+..++.+++++|
T Consensus 289 ~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 289 NTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329 (330)
T ss_dssp CTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC---
T ss_pred ccccccccceEeecCcccccccCccccccccceeEEEeccc
Confidence 2566777777777653 34444555556666666555
No 47
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.97 E-value=2.7e-33 Score=308.29 Aligned_cols=310 Identities=18% Similarity=0.120 Sum_probs=185.2
Q ss_pred CCCcEEEecCCCCCccCchHHhhcCCCCCEEEccCCcccCc----CccCccCCCCcCEEEccCCcCcccCChhhhhcCC-
Q 003893 199 HDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDSLVGP----FRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDILS- 273 (788)
Q Consensus 199 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~- 273 (788)
++|++|+++++.+++.....++..+++|++|++++|.+++. .+..+..+++|++|++++|.+.+..+..++..++
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~ 82 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT 82 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence 46788999999887666566568899999999999988743 2445677899999999999987655556666565
Q ss_pred ---CCcEEEeeCCcCCC----CCCccccCCCCCCEEEccCCcCCCccchHHhh----CCCCCcEEEccccccCccc----
Q 003893 274 ---RLTVFNISMNALDG----SIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAM----GCVSLRSLALSNNNLEGHM---- 338 (788)
Q Consensus 274 ---~L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~----~l~~L~~L~l~~n~i~~~~---- 338 (788)
+|++|++++|.++. .++..+..+++|++|++++|.+++..+..+.. ..++|++|++++|.++...
T Consensus 83 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l 162 (461)
T 1z7x_W 83 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPL 162 (461)
T ss_dssp TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred CCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHH
Confidence 69999999999874 34777889999999999999887444443332 2456888888888777543
Q ss_pred cccccCCCccCceeccCccCcccCCccCC-----CCCCCcEEEcccCcCCCC----CCccccCCCCccEEEccCCeeccC
Q 003893 339 FSRNFNLTNLIWLQLEGNHFVGEIPQSLS-----KCSSLQGLFLSNNSLSGK----IPRWLGNLTVLRHIIMPKNHIEGP 409 (788)
Q Consensus 339 ~~~~~~l~~L~~L~l~~n~~~~~~~~~~~-----~l~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~l~~n~~~~~ 409 (788)
+..+..+++|++|++++|.+....+..+. ..++|++|++++|.++.. ++..+..+++|++|++++|.+.+.
T Consensus 163 ~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~ 242 (461)
T 1z7x_W 163 ASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDV 242 (461)
T ss_dssp HHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHH
T ss_pred HHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChH
Confidence 23344557777777777776543222222 244666666666655532 233344445555555555544432
Q ss_pred chhh-----hhcccCCcEEeccCCcCCCCCCCCCCCCcccEEEccCcccccccCcccccccccccEEeCCCCccCCCCCc
Q 003893 410 IPLE-----FCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPD 484 (788)
Q Consensus 410 ~~~~-----~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~ 484 (788)
.... +..+++|++|++++|.++.... ..++. .+..+++|++|++++|.+++..+.
T Consensus 243 ~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~-------------------~~l~~-~l~~~~~L~~L~Ls~n~i~~~~~~ 302 (461)
T 1z7x_W 243 GMAELCPGLLHPSSRLRTLWIWECGITAKGC-------------------GDLCR-VLRAKESLKELSLAGNELGDEGAR 302 (461)
T ss_dssp HHHHHHHHHTSTTCCCCEEECTTSCCCHHHH-------------------HHHHH-HHHHCTTCCEEECTTCCCHHHHHH
T ss_pred HHHHHHHHHhcCCCCceEEECcCCCCCHHHH-------------------HHHHH-HHhhCCCcceEECCCCCCchHHHH
Confidence 2111 1124444444444444331000 00121 344455666666666655432222
Q ss_pred ccc-----CCcCCcEEEccCccCccc----CcccccCCCCCCEEEccCCcCCc
Q 003893 485 RVD-----GLSQLSYLILAHNNLEGE----VPIQLCRLNQLQLLDLSNNNLHG 528 (788)
Q Consensus 485 ~~~-----~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~ 528 (788)
.+. ..++|++|++++|.+++. ++..+..+++|++|++++|++++
T Consensus 303 ~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~ 355 (461)
T 1z7x_W 303 LLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLED 355 (461)
T ss_dssp HHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHH
T ss_pred HHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCcccc
Confidence 221 124556666666655533 23334445555555555555543
No 48
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.97 E-value=1.6e-30 Score=268.88 Aligned_cols=249 Identities=29% Similarity=0.464 Sum_probs=137.0
Q ss_pred ccCceeccCccCcc--cCCccCCCCCCCcEEEccc-CcCCCCCCccccCCCCccEEEccCCeeccCchhhhhcccCCcEE
Q 003893 347 NLIWLQLEGNHFVG--EIPQSLSKCSSLQGLFLSN-NSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQIL 423 (788)
Q Consensus 347 ~L~~L~l~~n~~~~--~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L 423 (788)
+++.|++++|.+.+ .+|..+..+++|++|++++ |.+.+.+|..+..+++|++|++++|.+.+..|..+..+++|++|
T Consensus 51 ~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L 130 (313)
T 1ogq_A 51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTL 130 (313)
T ss_dssp CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEE
T ss_pred eEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEE
Confidence 34444444444444 4444455555555555552 44444445555555555555555555554555555555555555
Q ss_pred eccCCcCCCCCCCCCCCCcccEEEccCcccccccCcccccccccccEEeCCCCccCCCCCccccCCc-CCcEEEccCccC
Q 003893 424 DISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLS-QLSYLILAHNNL 502 (788)
Q Consensus 424 ~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~-~L~~L~L~~n~l 502 (788)
++++|.+.+..+ . .+..+++|++|++++|++++.+|..+..++ +|++|++++|++
T Consensus 131 ~Ls~N~l~~~~p-----------------------~-~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l 186 (313)
T 1ogq_A 131 DFSYNALSGTLP-----------------------P-SISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRL 186 (313)
T ss_dssp ECCSSEEESCCC-----------------------G-GGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEE
T ss_pred eCCCCccCCcCC-----------------------h-HHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCee
Confidence 555555442221 1 344444455555555555444444454444 555555555555
Q ss_pred cccCcccccCCCCCCEEEccCCcCCccCcccccccchhhhccCCCCCCCcccceeecCCcccCcccccccceEeeecCce
Q 003893 503 EGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSIT 582 (788)
Q Consensus 503 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~ 582 (788)
++..|..+..++ |++|++++|.+++..|..+..++
T Consensus 187 ~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~-------------------------------------------- 221 (313)
T 1ogq_A 187 TGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDK-------------------------------------------- 221 (313)
T ss_dssp EEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTS--------------------------------------------
T ss_pred eccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCC--------------------------------------------
Confidence 545555555554 55555555555555444443333
Q ss_pred ecccCCccCCCceEECCCCcccccCcccccccccCCeEeCCCCCCCCCCCcccCCCCCCCeeeCCCcccCccCchhhhcC
Q 003893 583 YTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVEL 662 (788)
Q Consensus 583 ~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l 662 (788)
+|+.|++++|.+++..|. +..+++|++|+|++|++++.+|..|..+++|++|++++|++++.+|.. ..+
T Consensus 222 ---------~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l 290 (313)
T 1ogq_A 222 ---------NTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNL 290 (313)
T ss_dssp ---------CCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTG
T ss_pred ---------CCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-ccc
Confidence 555555666655544443 556667777777777776666777777777777777777777666655 566
Q ss_pred CCCcEEecccCcC
Q 003893 663 NTLAVFSVAYNNL 675 (788)
Q Consensus 663 ~~L~~L~l~~N~l 675 (788)
++|+.+++++|+.
T Consensus 291 ~~L~~l~l~~N~~ 303 (313)
T 1ogq_A 291 QRFDVSAYANNKC 303 (313)
T ss_dssp GGSCGGGTCSSSE
T ss_pred cccChHHhcCCCC
Confidence 6777777777763
No 49
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.96 E-value=6.6e-28 Score=262.59 Aligned_cols=111 Identities=23% Similarity=0.303 Sum_probs=62.8
Q ss_pred CCceEECCCCcccccCcccccccccCCeEeCCCCCCCCCCCcccCCCCCCCeeeCCCcccCccCchhhhcCCCCcEEecc
Q 003893 592 LLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVA 671 (788)
Q Consensus 592 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~ 671 (788)
+|++|++++|.++. +| .+..+++|+.|+|++|++++..|..|.++++|++|++++|++++..+..|..+++|+.|+++
T Consensus 186 ~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 263 (440)
T 3zyj_A 186 NLRYLNLAMCNLRE-IP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLA 263 (440)
T ss_dssp SCCEEECTTSCCSS-CC-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECT
T ss_pred ccCeecCCCCcCcc-cc-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECC
Confidence 44555555555442 22 24555555556666555555555555555666666666666555555555555566666666
Q ss_pred cCcCcccCCCCccccCCCCcCCcCCCCCCCCCC
Q 003893 672 YNNLSGKIPERAAQFATFNESSYEGNPFLCGPP 704 (788)
Q Consensus 672 ~N~l~~~~~~~~~~~~~l~~~~~~~Np~~C~~~ 704 (788)
+|++++..+..+..+++++.+++.+|||.|+|.
T Consensus 264 ~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~ 296 (440)
T 3zyj_A 264 HNNLTLLPHDLFTPLHHLERIHLHHNPWNCNCD 296 (440)
T ss_dssp TSCCCCCCTTTTSSCTTCCEEECCSSCEECSST
T ss_pred CCCCCccChhHhccccCCCEEEcCCCCccCCCC
Confidence 666655555555555556666666666666665
No 50
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.96 E-value=8.7e-28 Score=262.61 Aligned_cols=111 Identities=22% Similarity=0.272 Sum_probs=54.7
Q ss_pred CCceEECCCCcccccCcccccccccCCeEeCCCCCCCCCCCcccCCCCCCCeeeCCCcccCccCchhhhcCCCCcEEecc
Q 003893 592 LLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVA 671 (788)
Q Consensus 592 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~ 671 (788)
+|++|++++|++++. | .+..+++|+.|+|++|++++..|..|.++++|++|++++|++++..+..|..+++|+.|+++
T Consensus 197 ~L~~L~L~~n~l~~~-~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 274 (452)
T 3zyi_A 197 NLKYLNLGMCNIKDM-P-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLA 274 (452)
T ss_dssp TCCEEECTTSCCSSC-C-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCCEEECCCCccccc-c-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECC
Confidence 344444444444422 1 24444455555555555554444455555555555555555554444455555555555555
Q ss_pred cCcCcccCCCCccccCCCCcCCcCCCCCCCCCC
Q 003893 672 YNNLSGKIPERAAQFATFNESSYEGNPFLCGPP 704 (788)
Q Consensus 672 ~N~l~~~~~~~~~~~~~l~~~~~~~Np~~C~~~ 704 (788)
+|++++..+..+..+++++.+++.+|||.|+|+
T Consensus 275 ~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~ 307 (452)
T 3zyi_A 275 HNNLSSLPHDLFTPLRYLVELHLHHNPWNCDCD 307 (452)
T ss_dssp SSCCSCCCTTSSTTCTTCCEEECCSSCEECSTT
T ss_pred CCcCCccChHHhccccCCCEEEccCCCcCCCCC
Confidence 555554444444445555555555555555554
No 51
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.95 E-value=2.9e-28 Score=257.35 Aligned_cols=180 Identities=21% Similarity=0.189 Sum_probs=112.6
Q ss_pred CCCCcEEEccccccCccccccccCCCccCceeccCccCcccCCccCCCCCCCcEEEcccCcCCCCCCccccCCCCccEEE
Q 003893 321 CVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHII 400 (788)
Q Consensus 321 l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 400 (788)
|+.....+.+++.++.+.. .+ .++|++|++++|.+.+..+..+.++++|++|++++|.+++..+..+.++++|++|+
T Consensus 30 C~~~~~c~~~~~~l~~iP~-~~--~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 106 (353)
T 2z80_A 30 CDRNGICKGSSGSLNSIPS-GL--TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLD 106 (353)
T ss_dssp ECTTSEEECCSTTCSSCCT-TC--CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred CCCCeEeeCCCCCcccccc-cc--cccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEE
Confidence 4455556666666664432 22 24677777777776655555666677777777777766665556666666666666
Q ss_pred ccCCeeccCchhhhhcccCCcEEeccCCcCCCCCCCCCCCCcccEEEccCcccccccCc-ccccccccccEEeCCCC-cc
Q 003893 401 MPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKE-GTFFNCLTLMILDLSYN-HL 478 (788)
Q Consensus 401 l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~-~~~~~~~~L~~L~l~~n-~i 478 (788)
+++|.+++..+..+.++++|++|++++|++.. ++. ..+.++++|++|++++| .+
T Consensus 107 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~------------------------l~~~~~~~~l~~L~~L~l~~n~~~ 162 (353)
T 2z80_A 107 LSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKT------------------------LGETSLFSHLTKLQILRVGNMDTF 162 (353)
T ss_dssp CCSSCCSSCCHHHHTTCTTCSEEECTTCCCSS------------------------SCSSCSCTTCTTCCEEEEEESSSC
T ss_pred CCCCcCCcCCHhHhCCCccCCEEECCCCCCcc------------------------cCchhhhccCCCCcEEECCCCccc
Confidence 66666665555556666666666666665541 222 24556667777777776 35
Q ss_pred CCCCCccccCCcCCcEEEccCccCcccCcccccCCCCCCEEEccCCcCC
Q 003893 479 NGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLH 527 (788)
Q Consensus 479 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 527 (788)
....+..+.++++|++|++++|.+++..|..+..+++|++|++++|.+.
T Consensus 163 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~ 211 (353)
T 2z80_A 163 TKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI 211 (353)
T ss_dssp CEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCST
T ss_pred cccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccc
Confidence 5445556666677777777777766666666666666666666666654
No 52
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.95 E-value=1.5e-27 Score=246.57 Aligned_cols=249 Identities=22% Similarity=0.280 Sum_probs=153.2
Q ss_pred CceeccCccCcccCCccCCCCCCCcEEEcccCcCCCCCCccccCCCCccEEEccCCeeccC--chhhhhcccCCcEEecc
Q 003893 349 IWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGP--IPLEFCQLRILQILDIS 426 (788)
Q Consensus 349 ~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~--~~~~~~~l~~L~~L~l~ 426 (788)
+.++.+++.++ .+|..+. ++|++|++++|.+....+..+..+++|++|++++|.+... .+..+..+++|++|+++
T Consensus 10 ~~l~c~~~~l~-~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls 86 (306)
T 2z66_A 10 TEIRCNSKGLT-SVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLS 86 (306)
T ss_dssp TEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECC
T ss_pred CEEEcCCCCcc-cCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECC
Confidence 45666666665 3444332 4677777777777644444566667777777777666532 24455556666666666
Q ss_pred CCcCCCCCCCCCCCCcccEEEccCcccccccCcccccccccccEEeCCCCccCCCCC-ccccCCcCCcEEEccCccCccc
Q 003893 427 DNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIP-DRVDGLSQLSYLILAHNNLEGE 505 (788)
Q Consensus 427 ~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~-~~~~~l~~L~~L~L~~n~l~~~ 505 (788)
+|.+. .++. .+..+++|++|++++|++++..+ ..+..+++|++|++++|.+.+.
T Consensus 87 ~n~i~------------------------~l~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~ 141 (306)
T 2z66_A 87 FNGVI------------------------TMSS-NFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVA 141 (306)
T ss_dssp SCSEE------------------------EEEE-EEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEEC
T ss_pred CCccc------------------------cChh-hcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCcc
Confidence 66553 2222 45667777777777777765443 4566677777777777777666
Q ss_pred CcccccCCCCCCEEEccCCcCCc-cCcccccccchhhhccCCCCCCCcccceeecCCcccCcccccccceEeeecCceec
Q 003893 506 VPIQLCRLNQLQLLDLSNNNLHG-HIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYT 584 (788)
Q Consensus 506 ~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~ 584 (788)
.+..+..+++|++|++++|.+.+ ..|..+..++
T Consensus 142 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~---------------------------------------------- 175 (306)
T 2z66_A 142 FNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELR---------------------------------------------- 175 (306)
T ss_dssp STTTTTTCTTCCEEECTTCEEGGGEECSCCTTCT----------------------------------------------
T ss_pred chhhcccCcCCCEEECCCCccccccchhHHhhCc----------------------------------------------
Confidence 66666667777777777776654 3343333332
Q ss_pred ccCCccCCCceEECCCCcccccCcccccccccCCeEeCCCCCCCCCCCcccCCCCCCCeeeCCCcccCccCchhhhcCC-
Q 003893 585 YQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELN- 663 (788)
Q Consensus 585 ~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~- 663 (788)
+|++|++++|.+++..|..+..+++|++|+|++|++++..+..|..+++|++|++++|++++..|..+..++
T Consensus 176 -------~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~ 248 (306)
T 2z66_A 176 -------NLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPS 248 (306)
T ss_dssp -------TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCT
T ss_pred -------CCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhc
Confidence 566666666666666566666666666666666666655555566666666666666666666666666553
Q ss_pred CCcEEecccCcCccc
Q 003893 664 TLAVFSVAYNNLSGK 678 (788)
Q Consensus 664 ~L~~L~l~~N~l~~~ 678 (788)
+|++|++++|++++.
T Consensus 249 ~L~~L~L~~N~~~~~ 263 (306)
T 2z66_A 249 SLAFLNLTQNDFACT 263 (306)
T ss_dssp TCCEEECTTCCEECS
T ss_pred cCCEEEccCCCeecc
Confidence 666666666666553
No 53
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.95 E-value=1.8e-27 Score=246.01 Aligned_cols=113 Identities=21% Similarity=0.318 Sum_probs=53.4
Q ss_pred CCceEECCCCcccc-cCcccccccccCCeEeCCCCCCCCCCCcccCCCCCCCeeeCCCcccCccCchhhhcCCCCcEEec
Q 003893 592 LLSGLDLSCNRLIG-HIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSV 670 (788)
Q Consensus 592 ~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l 670 (788)
+|++|++++|.+++ ..|..+..+++|++|++++|++++..|..|..+++|++|++++|++++..+..+..+++|+.|++
T Consensus 151 ~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 230 (306)
T 2z66_A 151 SLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDY 230 (306)
T ss_dssp TCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEEC
T ss_pred CCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeEC
Confidence 44444444444443 33444444444555555554444444444444444555555555444444444444444455555
Q ss_pred ccCcCcccCCCCccccC-CCCcCCcCCCCCCCCCC
Q 003893 671 AYNNLSGKIPERAAQFA-TFNESSYEGNPFLCGPP 704 (788)
Q Consensus 671 ~~N~l~~~~~~~~~~~~-~l~~~~~~~Np~~C~~~ 704 (788)
++|++++..|..+..++ +++.+++.+||+.|+|+
T Consensus 231 ~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~ 265 (306)
T 2z66_A 231 SLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCE 265 (306)
T ss_dssp TTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGG
T ss_pred CCCCCcccCHHHHHhhhccCCEEEccCCCeecccC
Confidence 55544444444444442 44444444455444443
No 54
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.95 E-value=5e-28 Score=255.54 Aligned_cols=283 Identities=22% Similarity=0.233 Sum_probs=196.8
Q ss_pred CCCCCEEEccCCcCCCccchHHhhCCCCCcEEEccccccCccccccccCCCccCceeccCccCcccCCccCCCCCCCcEE
Q 003893 296 MNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGL 375 (788)
Q Consensus 296 l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L 375 (788)
++.....+++++.++ .+|..++ ++|++|++++|.+++..+..+.++++|++|++++|.+.+..+..|.++++|++|
T Consensus 30 C~~~~~c~~~~~~l~-~iP~~~~---~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 105 (353)
T 2z80_A 30 CDRNGICKGSSGSLN-SIPSGLT---EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHL 105 (353)
T ss_dssp ECTTSEEECCSTTCS-SCCTTCC---TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred CCCCeEeeCCCCCcc-ccccccc---ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEE
Confidence 444555677777776 6776543 467777777777777666667777788888888887776667777788888888
Q ss_pred EcccCcCCCCCCccccCCCCccEEEccCCeeccCch-hhhhcccCCcEEeccCCc-CCCCCCCCCCCCcccEEEccCccc
Q 003893 376 FLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIP-LEFCQLRILQILDISDNN-ISGSLPSCYDFVCIEQVHLSKNML 453 (788)
Q Consensus 376 ~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~-~~~~~l~~L~~L~l~~n~-~~~~~~~~~~~~~L~~L~l~~n~~ 453 (788)
++++|.+++..+..+..+++|++|++++|.+.+..+ ..+..+++|++|++++|. +.
T Consensus 106 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~---------------------- 163 (353)
T 2z80_A 106 DLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFT---------------------- 163 (353)
T ss_dssp ECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCC----------------------
T ss_pred ECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCcccc----------------------
Confidence 888888875555557778888888888888775444 467778888888888874 33
Q ss_pred ccccCcccccccccccEEeCCCCccCCCCCccccCCcCCcEEEccCccCcccCcccccCCCCCCEEEccCCcCCccCccc
Q 003893 454 HGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSC 533 (788)
Q Consensus 454 ~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 533 (788)
.++...+.++++|++|++++|.+++..|..+..+++|++|++++|.+....+..+..+++|++|++++|.+++..+..
T Consensus 164 --~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~ 241 (353)
T 2z80_A 164 --KIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSE 241 (353)
T ss_dssp --EECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC-
T ss_pred --ccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccc
Confidence 233336677788888888888888777788888888888888888887444444556788888888888887654433
Q ss_pred ccccchhhhccCCCCCCCcccceeecCCcccCcccccccceEeeecCceecccCCccCCCceEECCCCcccc----cCcc
Q 003893 534 FDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIG----HIPP 609 (788)
Q Consensus 534 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~----~~~~ 609 (788)
+.... ....++.++++++.+.+ .+|.
T Consensus 242 l~~~~--------------------------------------------------~~~~l~~l~L~~~~l~~~~l~~l~~ 271 (353)
T 2z80_A 242 LSTGE--------------------------------------------------TNSLIKKFTFRNVKITDESLFQVMK 271 (353)
T ss_dssp -------------------------------------------------------CCCCCCEEEEESCBCCHHHHHHHHH
T ss_pred ccccc--------------------------------------------------ccchhhccccccccccCcchhhhHH
Confidence 22111 11245666666666553 3566
Q ss_pred cccccccCCeEeCCCCCCCCCCCcccCCCCCCCeeeCCCcccCccCc
Q 003893 610 QIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIP 656 (788)
Q Consensus 610 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 656 (788)
.+..+++|+.|++++|+++...+..|..+++|++|++++|++.+..|
T Consensus 272 ~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 272 LLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 318 (353)
T ss_dssp HHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred HHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence 67777788888888888775444445777777777777777775443
No 55
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.94 E-value=4.1e-26 Score=248.39 Aligned_cols=247 Identities=21% Similarity=0.205 Sum_probs=145.9
Q ss_pred ceeccCccCcccCCccCCCCCCCcEEEcccCcCCCCCCccccCCCCccEEEccCCeeccCchhhhhcccCCcEEeccCCc
Q 003893 350 WLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNN 429 (788)
Q Consensus 350 ~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~ 429 (788)
.++.++..+. .+|..+. ++++.|++++|.+....+..|.++++|++|++++|.+.+..+..|.++++|++|++++|+
T Consensus 47 ~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~ 123 (440)
T 3zyj_A 47 KVICVRKNLR-EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNR 123 (440)
T ss_dssp EEECCSCCCS-SCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSC
T ss_pred EEEeCCCCcC-cCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCc
Confidence 3444444444 3333332 355666666666655555556666666666666666665555666666666666666666
Q ss_pred CCCCCCCCCCCCcccEEEccCcccccccCcccccccccccEEeCCCCccCCCCCccccCCcCCcEEEccCcc-CcccCcc
Q 003893 430 ISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNN-LEGEVPI 508 (788)
Q Consensus 430 ~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~ 508 (788)
++. ++...|..+++|++|++++|++....+..|..+++|++|++++|+ +....+.
T Consensus 124 l~~------------------------~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~ 179 (440)
T 3zyj_A 124 LTT------------------------IPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEG 179 (440)
T ss_dssp CSS------------------------CCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTT
T ss_pred CCe------------------------eCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcc
Confidence 552 222244555555566666655554444455556666666666533 3333334
Q ss_pred cccCCCCCCEEEccCCcCCccCcccccccchhhhccCCCCCCCcccceeecCCcccCcccccccceEeeecCceecccCC
Q 003893 509 QLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGR 588 (788)
Q Consensus 509 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~ 588 (788)
.|.++++|++|++++|.++.... +..+
T Consensus 180 ~~~~l~~L~~L~L~~n~l~~~~~--~~~l--------------------------------------------------- 206 (440)
T 3zyj_A 180 AFEGLSNLRYLNLAMCNLREIPN--LTPL--------------------------------------------------- 206 (440)
T ss_dssp TTTTCSSCCEEECTTSCCSSCCC--CTTC---------------------------------------------------
T ss_pred hhhcccccCeecCCCCcCccccc--cCCC---------------------------------------------------
Confidence 55666666666666666553211 1111
Q ss_pred ccCCCceEECCCCcccccCcccccccccCCeEeCCCCCCCCCCCcccCCCCCCCeeeCCCcccCccCchhhhcCCCCcEE
Q 003893 589 VPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVF 668 (788)
Q Consensus 589 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L 668 (788)
++|+.|+|++|.+++..|..|.++++|+.|+|++|++++..+..|.++++|++|+|++|+++...+..|..+++|+.|
T Consensus 207 --~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 284 (440)
T 3zyj_A 207 --IKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERI 284 (440)
T ss_dssp --SSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEE
T ss_pred --cccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEE
Confidence 156667777776666666667777777777777777776666667777777777777777776666666667777777
Q ss_pred ecccCcCccc
Q 003893 669 SVAYNNLSGK 678 (788)
Q Consensus 669 ~l~~N~l~~~ 678 (788)
++++|++.|.
T Consensus 285 ~L~~Np~~Cd 294 (440)
T 3zyj_A 285 HLHHNPWNCN 294 (440)
T ss_dssp ECCSSCEECS
T ss_pred EcCCCCccCC
Confidence 7777776654
No 56
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.94 E-value=4.6e-26 Score=248.95 Aligned_cols=87 Identities=20% Similarity=0.188 Sum_probs=48.4
Q ss_pred CCceEECCCCcccccCcccccccccCCeEeCCCCCCCCCCCcccCCCCCCCeeeCCCcccCccCchhhhcCCCCcEEecc
Q 003893 592 LLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVA 671 (788)
Q Consensus 592 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~ 671 (788)
+|+.|++++|.+++..|..|.++++|+.|+|++|++++..+..|..+++|++|+|++|++++..+..+..+++|+.|+++
T Consensus 219 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~ 298 (452)
T 3zyi_A 219 GLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLH 298 (452)
T ss_dssp TCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECC
T ss_pred cccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEcc
Confidence 45555555555555555555555555555555555555555555555555555555555554444455555555555555
Q ss_pred cCcCccc
Q 003893 672 YNNLSGK 678 (788)
Q Consensus 672 ~N~l~~~ 678 (788)
+|++.+.
T Consensus 299 ~Np~~Cd 305 (452)
T 3zyi_A 299 HNPWNCD 305 (452)
T ss_dssp SSCEECS
T ss_pred CCCcCCC
Confidence 5555543
No 57
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.94 E-value=9.3e-29 Score=281.32 Aligned_cols=434 Identities=13% Similarity=0.087 Sum_probs=249.8
Q ss_pred hhHhhhcCCCCCEEeCCCCCCCCcccCCCCccC------------CCCCCCEEEcCCCCCCCCccHhhhc-CC-CCCEEe
Q 003893 38 LQIIGESMPSIQYLSLSNSSVSNNSRTLDQGLC------------PLVHLQELHMADNDLRGSLPWCLAN-MT-SLRILD 103 (788)
Q Consensus 38 ~~~~~~~l~~L~~L~L~~~~l~~~~~~l~~~l~------------~l~~L~~L~L~~n~i~~~~~~~~~~-l~-~L~~L~ 103 (788)
+..+...+++|++|+++++........+|..++ .+++|++|+|++|.+++..+..+.. ++ +|++|+
T Consensus 65 ~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~ 144 (592)
T 3ogk_B 65 PDRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLK 144 (592)
T ss_dssp HHHHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEE
T ss_pred hHHHHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEE
Confidence 333434488899999987642111111112222 6788888888888877666666665 33 488888
Q ss_pred CCCCcC-cCC-CChhhhcCCCCCCEEEcCCCcccCccC---ccccCCCCCccEEEccCCccchhhhccccCCCCcccccE
Q 003893 104 VSSNQL-IGS-ISSSPLIHLTSIEDLILSDNHFQIPIS---LEPLFNHSRLKIFDAENNEINAEIIESHSLTTPNFQLQS 178 (788)
Q Consensus 104 Ls~n~l-~~~-~~~~~l~~l~~L~~L~l~~n~~~~~~~---~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~ 178 (788)
+++|.. ... ++. ....+++|++|++++|.+++... ......+++|+.|++++|.+.+...
T Consensus 145 L~~~~~~~~~~l~~-~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~-------------- 209 (592)
T 3ogk_B 145 LDKCSGFTTDGLLS-IVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISP-------------- 209 (592)
T ss_dssp EESCEEEEHHHHHH-HHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCH--------------
T ss_pred CcCCCCcCHHHHHH-HHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCH--------------
Confidence 888752 110 111 22468888888888887653311 0123457788888887776542110
Q ss_pred EEccCCCcCCccCCccccCCCCCcEEEecCCCCCccCchHHhhcCCCCCEEEccCCccc---CcCccCccCCCCcCEEEc
Q 003893 179 LLLSSGYRDGITFPKFLYNQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDSLV---GPFRLPIHSHKQLRLLDV 255 (788)
Q Consensus 179 L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~---~~~~~~~~~~~~L~~L~l 255 (788)
..++..+..+++|++|++++|.+.+ ++. .+..+++|++|+++..... ......+..+++|+.+++
T Consensus 210 ----------~~l~~~~~~~~~L~~L~L~~~~~~~-l~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l 277 (592)
T 3ogk_B 210 ----------KDLETIARNCRSLVSVKVGDFEILE-LVG-FFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGL 277 (592)
T ss_dssp ----------HHHHHHHHHCTTCCEEECSSCBGGG-GHH-HHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEE
T ss_pred ----------HHHHHHHhhCCCCcEEeccCccHHH-HHH-HHhhhhHHHhhcccccccccchHHHHHHhhccccccccCc
Confidence 1123344567788888888887754 443 3578888888888753222 222345566778888888
Q ss_pred cCCcCcccCChhhhhcCCCCcEEEeeCCcCCCCCC-ccccCCCCCCEEEccCCcCCCccchHHhhCCCCCcEEEccc---
Q 003893 256 SKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIP-SSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSN--- 331 (788)
Q Consensus 256 ~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~l~~--- 331 (788)
+++... .+|..+ ..+++|++|++++|.+++... ..+..+++|++|+++ +.+.+.....+...+++|++|++++
T Consensus 278 ~~~~~~-~l~~~~-~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~~g~~ 354 (592)
T 3ogk_B 278 SYMGPN-EMPILF-PFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQLKRLRIERGAD 354 (592)
T ss_dssp TTCCTT-TGGGGG-GGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCTTCCEEEEECCCC
T ss_pred cccchh-HHHHHH-hhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc-CccCHHHHHHHHHhCCCCCEEEeecCcc
Confidence 775432 444433 336788888888887653322 235677888888887 4343333344445677888888873
Q ss_pred --------cccCcccccc-ccCCCccCceeccCccCcccCCccCCC-CCCCcEEEcc----cCcCCCC-----CCccccC
Q 003893 332 --------NNLEGHMFSR-NFNLTNLIWLQLEGNHFVGEIPQSLSK-CSSLQGLFLS----NNSLSGK-----IPRWLGN 392 (788)
Q Consensus 332 --------n~i~~~~~~~-~~~l~~L~~L~l~~n~~~~~~~~~~~~-l~~L~~L~l~----~n~l~~~-----~~~~l~~ 392 (788)
+.++...... ...+++|++|+++.+.+++.....+.. +++|++|+++ .|.+++. ++..+.+
T Consensus 355 ~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~ 434 (592)
T 3ogk_B 355 EQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIG 434 (592)
T ss_dssp SSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHH
T ss_pred ccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHh
Confidence 3444322211 234667777777666665544444433 6667777775 3344432 1112344
Q ss_pred CCCccEEEccCCe--eccCchhhhh-cccCCcEEeccCCcCCCCCCCCCCCCcccEEEccCcccccccCccccccccccc
Q 003893 393 LTVLRHIIMPKNH--IEGPIPLEFC-QLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLM 469 (788)
Q Consensus 393 l~~L~~L~l~~n~--~~~~~~~~~~-~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~ 469 (788)
+++|+.|+++.|. +++.....+. .+++|++|++++|+++ +......+.++++|+
T Consensus 435 ~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~-----------------------~~~~~~~~~~~~~L~ 491 (592)
T 3ogk_B 435 CKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGES-----------------------DEGLMEFSRGCPNLQ 491 (592)
T ss_dssp CTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSS-----------------------HHHHHHHHTCCTTCC
T ss_pred CCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCC-----------------------HHHHHHHHhcCcccC
Confidence 5666666665332 3322222222 2555666666555543 221121446677888
Q ss_pred EEeCCCCccCCC-CCccccCCcCCcEEEccCccCcccCcccc-cCCCCCCEEEccCC
Q 003893 470 ILDLSYNHLNGN-IPDRVDGLSQLSYLILAHNNLEGEVPIQL-CRLNQLQLLDLSNN 524 (788)
Q Consensus 470 ~L~l~~n~i~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~L~~n 524 (788)
+|++++|.+++. .+.....+++|++|++++|+++......+ ..+|.+....+..+
T Consensus 492 ~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~~~~~l~~~~p~l~~~~~~~~ 548 (592)
T 3ogk_B 492 KLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMARPYWNIELIPSR 548 (592)
T ss_dssp EEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTTCTTGGGGCCTTEEEEEECCC
T ss_pred eeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHHHHHHHHHhCCCcEEEEecCc
Confidence 888888876533 23334567888888888888775433333 35666666655544
No 58
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.94 E-value=1.2e-28 Score=280.34 Aligned_cols=377 Identities=12% Similarity=0.044 Sum_probs=200.4
Q ss_pred CCCCcCEEEccCCcCcccCChhhhhcCCC-CcEEEeeCCcC-CC-CCCccccCCCCCCEEEccCCcCCCcc---chHHhh
Q 003893 246 SHKQLRLLDVSKNNFQGHIPLEIGDILSR-LTVFNISMNAL-DG-SIPSSFGNMNFLQFLDLSNNQLTGEI---PEHLAM 319 (788)
Q Consensus 246 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~~-L~~L~L~~n~l-~~-~~~~~~~~l~~L~~L~L~~n~i~~~~---~~~~~~ 319 (788)
.+++|++|++++|.+++..+..+...+++ |++|++++|.. .. ..+.....+++|++|++++|.+++.. -..+..
T Consensus 110 ~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~ 189 (592)
T 3ogk_B 110 NLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQ 189 (592)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHH
T ss_pred hCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHh
Confidence 34455555555554443333333332233 55555555441 10 01111224455555555555544221 111223
Q ss_pred CCCCCcEEEccccccCccc----cccccCCCccCceeccCccCcccCCccCCCCCCCcEEEcccCcCC---CCCCccccC
Q 003893 320 GCVSLRSLALSNNNLEGHM----FSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLS---GKIPRWLGN 392 (788)
Q Consensus 320 ~l~~L~~L~l~~n~i~~~~----~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~---~~~~~~l~~ 392 (788)
.+++|++|++++|.+++.. +..+.++++|++|++++|.+.+ .+..+..+++|++|+++..... ...+..+..
T Consensus 190 ~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~ 268 (592)
T 3ogk_B 190 HNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVF 268 (592)
T ss_dssp HCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCC
T ss_pred cCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhc
Confidence 3555555555555544211 1122344555555555555542 3344455555555555532211 122233444
Q ss_pred CCCccEEEccCCeeccCchhhhhcccCCcEEeccCCcCCCCCC-C-CCCCCcccEEEccCcccccccCcccccccccccE
Q 003893 393 LTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLP-S-CYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMI 470 (788)
Q Consensus 393 l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~-~-~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~ 470 (788)
+++|+.+.++++.. ...+..+..+++|++|++++|.+.+... . ...+++|+.|++.++ +.+......+..+++|++
T Consensus 269 ~~~L~~L~l~~~~~-~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~-~~~~~l~~~~~~~~~L~~ 346 (592)
T 3ogk_B 269 PRKLCRLGLSYMGP-NEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNV-IGDRGLEVLAQYCKQLKR 346 (592)
T ss_dssp CTTCCEEEETTCCT-TTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCE
T ss_pred cccccccCccccch-hHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCc-cCHHHHHHHHHhCCCCCE
Confidence 55555555555322 2344445555566666666655432211 1 123555666666522 222212224456788888
Q ss_pred EeCCC-----------CccCCC-CCccccCCcCCcEEEccCccCcccCcccccC-CCCCCEEEcc----CCcCCccCc--
Q 003893 471 LDLSY-----------NHLNGN-IPDRVDGLSQLSYLILAHNNLEGEVPIQLCR-LNQLQLLDLS----NNNLHGHIP-- 531 (788)
Q Consensus 471 L~l~~-----------n~i~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-l~~L~~L~L~----~n~l~~~~~-- 531 (788)
|++++ +.+++. .+.....+++|++|++..|.+++..+..+.. +++|++|+++ .|.+++.+.
T Consensus 347 L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~ 426 (592)
T 3ogk_B 347 LRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDN 426 (592)
T ss_dssp EEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHH
T ss_pred EEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHH
Confidence 88883 444422 1122345788888888888887665555554 7888888886 455554321
Q ss_pred ---ccccccchhhhccCCCCCCCcccceeecCCcccCcccccccceEeeecCceecccCCccCCCceEECCCCc--cccc
Q 003893 532 ---SCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNR--LIGH 606 (788)
Q Consensus 532 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~--l~~~ 606 (788)
..+..+ ++|+.|++++|. +++.
T Consensus 427 ~~~~~~~~~-----------------------------------------------------~~L~~L~L~~~~~~l~~~ 453 (592)
T 3ogk_B 427 GVRSLLIGC-----------------------------------------------------KKLRRFAFYLRQGGLTDL 453 (592)
T ss_dssp HHHHHHHHC-----------------------------------------------------TTCCEEEEECCGGGCCHH
T ss_pred HHHHHHHhC-----------------------------------------------------CCCCEEEEecCCCCccHH
Confidence 111111 268888887543 5544
Q ss_pred Cccccc-ccccCCeEeCCCCCCCC-CCCcccCCCCCCCeeeCCCcccCcc-CchhhhcCCCCcEEecccCcCccc
Q 003893 607 IPPQIG-NLTKIQTLNLSHNNLAG-PIPSTFSNLRNIESLDLSYNKLSWK-IPYQLVELNTLAVFSVAYNNLSGK 678 (788)
Q Consensus 607 ~~~~~~-~l~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~l~~l~~L~~L~l~~N~l~~~ 678 (788)
.+..+. .+++|+.|+|++|++++ ..+..+..+++|++|++++|+++.. ++.....+++|+.|++++|+++..
T Consensus 454 ~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~ 528 (592)
T 3ogk_B 454 GLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMT 528 (592)
T ss_dssp HHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTT
T ss_pred HHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHH
Confidence 444443 37888999999888875 2344557788899999999987654 333445688899999999987754
No 59
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.94 E-value=3.3e-26 Score=233.84 Aligned_cols=234 Identities=25% Similarity=0.264 Sum_probs=122.4
Q ss_pred CCcEEEcccCcCCCCCCccccCCCCccEEEccCCeeccCchhhhhcccCCcEEeccCCc-CCCCCCCCCCCCcccEEEcc
Q 003893 371 SLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNN-ISGSLPSCYDFVCIEQVHLS 449 (788)
Q Consensus 371 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~-~~~~~~~~~~~~~L~~L~l~ 449 (788)
+|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|. +.
T Consensus 33 ~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~------------------ 94 (285)
T 1ozn_A 33 ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLR------------------ 94 (285)
T ss_dssp TCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCC------------------
T ss_pred CceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCcc------------------
Confidence 45555555555544444444445555555555555444444445555555555555553 32
Q ss_pred CcccccccCcccccccccccEEeCCCCccCCCCCccccCCcCCcEEEccCccCcccCcccccCCCCCCEEEccCCcCCcc
Q 003893 450 KNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGH 529 (788)
Q Consensus 450 ~n~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 529 (788)
.++...+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|++++.
T Consensus 95 ------~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 168 (285)
T 1ozn_A 95 ------SVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSV 168 (285)
T ss_dssp ------CCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEE
T ss_pred ------ccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCccccc
Confidence 12222455555666666666666555555556666666666666666544444555566666666666655544
Q ss_pred CcccccccchhhhccCCCCCCCcccceeecCCcccCcccccccceEeeecCceecccCCccCCCceEECCCCcccccCcc
Q 003893 530 IPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPP 609 (788)
Q Consensus 530 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~ 609 (788)
.+..+..+. +|+.|++++|.+++..|.
T Consensus 169 ~~~~~~~l~-----------------------------------------------------~L~~L~l~~n~l~~~~~~ 195 (285)
T 1ozn_A 169 PERAFRGLH-----------------------------------------------------SLDRLLLHQNRVAHVHPH 195 (285)
T ss_dssp CTTTTTTCT-----------------------------------------------------TCCEEECCSSCCCEECTT
T ss_pred CHHHhcCcc-----------------------------------------------------ccCEEECCCCcccccCHh
Confidence 443333332 455566666665555555
Q ss_pred cccccccCCeEeCCCCCCCCCCCcccCCCCCCCeeeCCCcccCccCchhhhcCCCCcEEecccCcCcccCCCC
Q 003893 610 QIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSGKIPER 682 (788)
Q Consensus 610 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~ 682 (788)
.+..+++|+.|++++|++++..+..+..+++|++|++++|++....+.. .-...++.+..+.+.+.+..|..
T Consensus 196 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~-~~~~~l~~~~~~~~~~~c~~p~~ 267 (285)
T 1ozn_A 196 AFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRAR-PLWAWLQKFRGSSSEVPCSLPQR 267 (285)
T ss_dssp TTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGH-HHHHHHHHCCSEECCCBEEESGG
T ss_pred HccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcH-HHHHHHHhcccccCccccCCchH
Confidence 5666666666666666666555555666666666666666655322210 00112333344555555555543
No 60
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.94 E-value=5.2e-26 Score=232.35 Aligned_cols=224 Identities=24% Similarity=0.230 Sum_probs=107.0
Q ss_pred cEEEeeCCcCCCCCCccccCCCCCCEEEccCCcCCCccchHHhhCCCCCcEEEccccccCccccccccCCCccCceeccC
Q 003893 276 TVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEG 355 (788)
Q Consensus 276 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~ 355 (788)
++++.+++.++ .+|..+ .++|++|++++|.++ .++...+..+++|++|++++|.+++..+..+.++++|++|++++
T Consensus 14 ~~~~c~~~~l~-~ip~~~--~~~l~~L~l~~n~i~-~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 89 (285)
T 1ozn_A 14 VTTSCPQQGLQ-AVPVGI--PAASQRIFLHGNRIS-HVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSD 89 (285)
T ss_dssp CEEECCSSCCS-SCCTTC--CTTCSEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred eEEEcCcCCcc-cCCcCC--CCCceEEEeeCCcCC-ccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCC
Confidence 34444444444 223221 234555555555554 33333333444455555544444444444444444444444444
Q ss_pred cc-CcccCCccCCCCCCCcEEEcccCcCCCCCCccccCCCCccEEEccCCeeccCchhhhhcccCCcEEeccCCcCCCCC
Q 003893 356 NH-FVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSL 434 (788)
Q Consensus 356 n~-~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~ 434 (788)
|. +....+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|+++
T Consensus 90 n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~--- 166 (285)
T 1ozn_A 90 NAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRIS--- 166 (285)
T ss_dssp CTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC---
T ss_pred CCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCccc---
Confidence 43 33333444444444444444444444333444444444444444444444333333344444444444444332
Q ss_pred CCCCCCCcccEEEccCcccccccCcccccccccccEEeCCCCccCCCCCccccCCcCCcEEEccCccCcccCcccccCCC
Q 003893 435 PSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLN 514 (788)
Q Consensus 435 ~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 514 (788)
.++...+..+++|++|++++|.+++..|..+..+++|+.|++++|++++..+..+..++
T Consensus 167 ---------------------~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 225 (285)
T 1ozn_A 167 ---------------------SVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLR 225 (285)
T ss_dssp ---------------------EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCT
T ss_pred ---------------------ccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCc
Confidence 22222455556666666666666655555566666666666666666654445555666
Q ss_pred CCCEEEccCCcCC
Q 003893 515 QLQLLDLSNNNLH 527 (788)
Q Consensus 515 ~L~~L~L~~n~l~ 527 (788)
+|++|++++|++.
T Consensus 226 ~L~~L~l~~N~~~ 238 (285)
T 1ozn_A 226 ALQYLRLNDNPWV 238 (285)
T ss_dssp TCCEEECCSSCEE
T ss_pred ccCEEeccCCCcc
Confidence 6666666666554
No 61
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.94 E-value=1.4e-25 Score=233.22 Aligned_cols=235 Identities=20% Similarity=0.289 Sum_probs=152.6
Q ss_pred CCccCceeccCccCcccCCccCCCCCCCcEEEcccCcCCCCCCccccCCCCccEEEccCCeeccCchhhhhcccCCcEEe
Q 003893 345 LTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILD 424 (788)
Q Consensus 345 l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~ 424 (788)
.+.++.|++++|.+. .+|..+..+++|++|++++|.+. .+|..+..+++|++|++++|.+. .+|..+..+++|++|+
T Consensus 80 ~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~ 156 (328)
T 4fcg_A 80 QPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELS 156 (328)
T ss_dssp STTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEE
T ss_pred ccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEE
Confidence 466777777777777 55666667777777777777777 66667777777777777777776 5566677777777777
Q ss_pred ccCCcCCCCCCCCCCCCcccEEEccCcccccccCcccccccccccEEeCCCCccCCCCCccccCCcCCcEEEccCccCcc
Q 003893 425 ISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEG 504 (788)
Q Consensus 425 l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~ 504 (788)
+++|.+.+..|..+. . . ..+..+.++++|++|++++|.++
T Consensus 157 L~~n~~~~~~p~~~~------------------------~------~---------~~~~~~~~l~~L~~L~L~~n~l~- 196 (328)
T 4fcg_A 157 IRACPELTELPEPLA------------------------S------T---------DASGEHQGLVNLQSLRLEWTGIR- 196 (328)
T ss_dssp EEEETTCCCCCSCSE------------------------E------E---------C-CCCEEESTTCCEEEEEEECCC-
T ss_pred CCCCCCccccChhHh------------------------h------c---------cchhhhccCCCCCEEECcCCCcC-
Confidence 777665544332110 0 0 00112334555555555555555
Q ss_pred cCcccccCCCCCCEEEccCCcCCccCcccccccchhhhccCCCCCCCcccceeecCCcccCcccccccceEeeecCceec
Q 003893 505 EVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYT 584 (788)
Q Consensus 505 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~ 584 (788)
.+|..+..+++|++|++++|++++.++ .+..++
T Consensus 197 ~lp~~l~~l~~L~~L~L~~N~l~~l~~-~l~~l~---------------------------------------------- 229 (328)
T 4fcg_A 197 SLPASIANLQNLKSLKIRNSPLSALGP-AIHHLP---------------------------------------------- 229 (328)
T ss_dssp CCCGGGGGCTTCCEEEEESSCCCCCCG-GGGGCT----------------------------------------------
T ss_pred cchHhhcCCCCCCEEEccCCCCCcCch-hhccCC----------------------------------------------
Confidence 445555555666666666665554322 233322
Q ss_pred ccCCccCCCceEECCCCcccccCcccccccccCCeEeCCCCCCCCCCCcccCCCCCCCeeeCCCcccCccCchhhhcCCC
Q 003893 585 YQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNT 664 (788)
Q Consensus 585 ~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~ 664 (788)
+|++|++++|.+.+.+|..+..+++|+.|+|++|++.+.+|..+..+++|++|+|++|++.+.+|..+..+++
T Consensus 230 -------~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~ 302 (328)
T 4fcg_A 230 -------KLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPA 302 (328)
T ss_dssp -------TCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCT
T ss_pred -------CCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccC
Confidence 5666666666666666777777777777777777777777777777777777777777777777777777777
Q ss_pred CcEEecccCcCc
Q 003893 665 LAVFSVAYNNLS 676 (788)
Q Consensus 665 L~~L~l~~N~l~ 676 (788)
|+.+++..|.+.
T Consensus 303 L~~l~l~~~~~~ 314 (328)
T 4fcg_A 303 NCIILVPPHLQA 314 (328)
T ss_dssp TCEEECCGGGSC
T ss_pred ceEEeCCHHHHH
Confidence 777777766554
No 62
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.93 E-value=2.7e-25 Score=231.01 Aligned_cols=224 Identities=20% Similarity=0.224 Sum_probs=183.3
Q ss_pred CCccEEEccCCeeccCchhhhhcccCCcEEeccCCcCCCCCCCCCCCCcccEEEccCcccccccCcccccccccccEEeC
Q 003893 394 TVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDL 473 (788)
Q Consensus 394 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l 473 (788)
+.++.|++++|.+. .+|..+..+++|++|++++|.+. .+|. .+..+++|++|++
T Consensus 81 ~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~------------------------~lp~-~~~~l~~L~~L~L 134 (328)
T 4fcg_A 81 PGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM------------------------ELPD-TMQQFAGLETLTL 134 (328)
T ss_dssp TTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC------------------------CCCS-CGGGGTTCSEEEE
T ss_pred cceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc------------------------chhH-HHhccCCCCEEEC
Confidence 44555555555555 33444445555555555555543 4444 6778888999999
Q ss_pred CCCccCCCCCccccCCcCCcEEEccCccCcccCcccccC---------CCCCCEEEccCCcCCccCcccccccchhhhcc
Q 003893 474 SYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCR---------LNQLQLLDLSNNNLHGHIPSCFDNTTLHERYN 544 (788)
Q Consensus 474 ~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~---------l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~ 544 (788)
++|.++ .+|..+..+++|++|++++|++.+.+|..+.. +++|++|++++|.++ .+|..+..++
T Consensus 135 s~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~------ 206 (328)
T 4fcg_A 135 ARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQ------ 206 (328)
T ss_dssp ESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCT------
T ss_pred CCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCC------
Confidence 999888 67888888899999999998877777776654 999999999999998 5565565554
Q ss_pred CCCCCCCcccceeecCCcccCcccccccceEeeecCceecccCCccCCCceEECCCCcccccCcccccccccCCeEeCCC
Q 003893 545 NGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSH 624 (788)
Q Consensus 545 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~ 624 (788)
+|++|++++|.+++ +|..+..+++|++|+|++
T Consensus 207 -----------------------------------------------~L~~L~L~~N~l~~-l~~~l~~l~~L~~L~Ls~ 238 (328)
T 4fcg_A 207 -----------------------------------------------NLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRG 238 (328)
T ss_dssp -----------------------------------------------TCCEEEEESSCCCC-CCGGGGGCTTCCEEECTT
T ss_pred -----------------------------------------------CCCEEEccCCCCCc-CchhhccCCCCCEEECcC
Confidence 89999999999995 566799999999999999
Q ss_pred CCCCCCCCcccCCCCCCCeeeCCCcccCccCchhhhcCCCCcEEecccCcCcccCCCCccccCCCCcCCcCCCCC
Q 003893 625 NNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSGKIPERAAQFATFNESSYEGNPF 699 (788)
Q Consensus 625 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~~~~~~Np~ 699 (788)
|++.+.+|..|..+++|++|++++|.+.+.+|..+..+++|+.|++++|++.+.+|..+.+++++..+.+..|..
T Consensus 239 n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~ 313 (328)
T 4fcg_A 239 CTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQ 313 (328)
T ss_dssp CTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGS
T ss_pred CcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999998888776644
No 63
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.93 E-value=7.1e-27 Score=242.31 Aligned_cols=243 Identities=22% Similarity=0.197 Sum_probs=163.8
Q ss_pred ccCceeccCccCcccCCccCCCCCCCcEEEcccCcCCCCCCccccCCCCccEEEccCCeeccCchhhhhcccCCcEEecc
Q 003893 347 NLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDIS 426 (788)
Q Consensus 347 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~ 426 (788)
+|++|++++|.+.+..+..|..+++|++|++++|.+.+..+ +..+++|++|++++|.+.+.. ..++|++|+++
T Consensus 35 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l~-----~~~~L~~L~l~ 107 (317)
T 3o53_A 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL-----VGPSIETLHAA 107 (317)
T ss_dssp GCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEEE-----ECTTCCEEECC
T ss_pred CCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCcccccc-----CCCCcCEEECC
Confidence 34444444444433333344444444444444444443222 444555555555555554322 23566666666
Q ss_pred CCcCCCCCCCCCCCCcccEEEccCcccccccCcccccccccccEEeCCCCccCCCCCccccCCcCCcEEEccCccCcccC
Q 003893 427 DNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEV 506 (788)
Q Consensus 427 ~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 506 (788)
+|.+.+. + ...+++|++|++++|++++..+..+..+++|++|++++|.+++..
T Consensus 108 ~n~l~~~------------------------~---~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 160 (317)
T 3o53_A 108 NNNISRV------------------------S---CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVN 160 (317)
T ss_dssp SSCCSEE------------------------E---ECCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEE
T ss_pred CCccCCc------------------------C---ccccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCccc
Confidence 6665421 1 122467888888888888776777788888888888888888766
Q ss_pred cccc-cCCCCCCEEEccCCcCCccCcccccccchhhhccCCCCCCCcccceeecCCcccCcccccccceEeeecCceecc
Q 003893 507 PIQL-CRLNQLQLLDLSNNNLHGHIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTY 585 (788)
Q Consensus 507 ~~~~-~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~ 585 (788)
+..+ ..+++|++|++++|.+++..+..
T Consensus 161 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~---------------------------------------------------- 188 (317)
T 3o53_A 161 FAELAASSDTLEHLNLQYNFIYDVKGQV---------------------------------------------------- 188 (317)
T ss_dssp GGGGGGGTTTCCEEECTTSCCCEEECCC----------------------------------------------------
T ss_pred HHHHhhccCcCCEEECCCCcCccccccc----------------------------------------------------
Confidence 6665 46888999999988887542211
Q ss_pred cCCccCCCceEECCCCcccccCcccccccccCCeEeCCCCCCCCCCCcccCCCCCCCeeeCCCcccC-ccCchhhhcCCC
Q 003893 586 QGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLS-WKIPYQLVELNT 664 (788)
Q Consensus 586 ~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~l~~l~~ 664 (788)
..++|++|++++|++++..+ .+..+++|+.|+|++|++++ +|..+..+++|++|++++|++. +..|..+..+++
T Consensus 189 ---~l~~L~~L~Ls~N~l~~l~~-~~~~l~~L~~L~L~~N~l~~-l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~ 263 (317)
T 3o53_A 189 ---VFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQR 263 (317)
T ss_dssp ---CCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHH
T ss_pred ---ccccCCEEECCCCcCCcchh-hhcccCcccEEECcCCcccc-hhhHhhcCCCCCEEEccCCCccCcCHHHHHhcccc
Confidence 12378999999999986544 48889999999999999994 5777889999999999999998 778888888999
Q ss_pred CcEEecccC-cCcccCC
Q 003893 665 LAVFSVAYN-NLSGKIP 680 (788)
Q Consensus 665 L~~L~l~~N-~l~~~~~ 680 (788)
|+.+++++| .+++..|
T Consensus 264 L~~l~l~~~~~l~~~~~ 280 (317)
T 3o53_A 264 VQTVAKQTVKKLTGQNE 280 (317)
T ss_dssp HHHHHHHHHHHHHSSSS
T ss_pred ceEEECCCchhccCCch
Confidence 999999855 5555433
No 64
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.93 E-value=2.5e-27 Score=245.72 Aligned_cols=256 Identities=19% Similarity=0.161 Sum_probs=190.4
Q ss_pred ceeccCccCcccCCccCCCCCCCcEEEcccCcCCCCCCccccCCCCccEEEccCCeeccCchhhhhcccCCcEEeccCCc
Q 003893 350 WLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNN 429 (788)
Q Consensus 350 ~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~ 429 (788)
..+++.+.+.......+..+++|++|++++|.+.+..|..+..+++|++|++++|.+.+..+ +..+++|++|++++|.
T Consensus 14 i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~ 91 (317)
T 3o53_A 14 IEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNY 91 (317)
T ss_dssp EESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSE
T ss_pred EeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCc
Confidence 33444444443333344455667777777777766555666667777777777776664443 5666666666666665
Q ss_pred CCCCCCCCCCCCcccEEEccCcccccccCcccccccccccEEeCCCCccCCCCCccccCCcCCcEEEccCccCcccCccc
Q 003893 430 ISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQ 509 (788)
Q Consensus 430 ~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 509 (788)
++ .+...++|++|++++|.+++..+. .+++|++|++++|++++..+..
T Consensus 92 l~-----------------------------~l~~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~ 139 (317)
T 3o53_A 92 VQ-----------------------------ELLVGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLD 139 (317)
T ss_dssp EE-----------------------------EEEECTTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBC
T ss_pred cc-----------------------------cccCCCCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccchh
Confidence 54 122347899999999999865443 3678999999999999877888
Q ss_pred ccCCCCCCEEEccCCcCCccCccccc-ccchhhhccCCCCCCCcccceeecCCcccCcccccccceEeeecCceecccCC
Q 003893 510 LCRLNQLQLLDLSNNNLHGHIPSCFD-NTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGR 588 (788)
Q Consensus 510 ~~~l~~L~~L~L~~n~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~ 588 (788)
+..+++|++|++++|.+++..+..+. .+.
T Consensus 140 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~-------------------------------------------------- 169 (317)
T 3o53_A 140 EGCRSRVQYLDLKLNEIDTVNFAELAASSD-------------------------------------------------- 169 (317)
T ss_dssp TGGGSSEEEEECTTSCCCEEEGGGGGGGTT--------------------------------------------------
T ss_pred hhccCCCCEEECCCCCCCcccHHHHhhccC--------------------------------------------------
Confidence 89999999999999999877665542 222
Q ss_pred ccCCCceEECCCCcccccCcccccccccCCeEeCCCCCCCCCCCcccCCCCCCCeeeCCCcccCccCchhhhcCCCCcEE
Q 003893 589 VPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVF 668 (788)
Q Consensus 589 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L 668 (788)
+|++|++++|.+++.. ....+++|++|+|++|++++.. ..|..+++|++|++++|+++ .+|..+..+++|+.|
T Consensus 170 ---~L~~L~L~~N~l~~~~--~~~~l~~L~~L~Ls~N~l~~l~-~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L 242 (317)
T 3o53_A 170 ---TLEHLNLQYNFIYDVK--GQVVFAKLKTLDLSSNKLAFMG-PEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHF 242 (317)
T ss_dssp ---TCCEEECTTSCCCEEE--CCCCCTTCCEEECCSSCCCEEC-GGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEE
T ss_pred ---cCCEEECCCCcCcccc--cccccccCCEEECCCCcCCcch-hhhcccCcccEEECcCCccc-chhhHhhcCCCCCEE
Confidence 7999999999998663 3345899999999999999654 45889999999999999999 467788899999999
Q ss_pred ecccCcCc-ccCCCCccccCCCCcCCcCC
Q 003893 669 SVAYNNLS-GKIPERAAQFATFNESSYEG 696 (788)
Q Consensus 669 ~l~~N~l~-~~~~~~~~~~~~l~~~~~~~ 696 (788)
++++|+++ +.+|..+..++.++.+++.+
T Consensus 243 ~l~~N~~~~~~~~~~~~~~~~L~~l~l~~ 271 (317)
T 3o53_A 243 DLRGNGFHCGTLRDFFSKNQRVQTVAKQT 271 (317)
T ss_dssp ECTTCCCBHHHHHHHHHTCHHHHHHHHHH
T ss_pred EccCCCccCcCHHHHHhccccceEEECCC
Confidence 99999998 55666666777777776663
No 65
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.93 E-value=3.3e-24 Score=239.48 Aligned_cols=94 Identities=26% Similarity=0.349 Sum_probs=61.2
Q ss_pred CCcEEEeeCCcCCCCCCccccCCCCCCEEEccCCcCCCccchHHhhCCCCCcEEEccccccCccccccccCCCccCceec
Q 003893 274 RLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQL 353 (788)
Q Consensus 274 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l 353 (788)
+++.|++++|.++ .+|..+. ++|++|++++|.++ .+|. .+++|++|++++|.++++.. .+++|++|++
T Consensus 41 ~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~-~lp~----~l~~L~~L~Ls~N~l~~lp~----~l~~L~~L~L 108 (622)
T 3g06_A 41 GNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA----LPPELRTLEVSGNQLTSLPV----LPPGLLELSI 108 (622)
T ss_dssp CCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCS-CCCC----CCTTCCEEEECSCCCSCCCC----CCTTCCEEEE
T ss_pred CCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCC-CCCC----cCCCCCEEEcCCCcCCcCCC----CCCCCCEEEC
Confidence 5788888888877 5555444 67888888888777 6665 35677777777777664332 4566666666
Q ss_pred cCccCcccCCccCCCCCCCcEEEcccCcCC
Q 003893 354 EGNHFVGEIPQSLSKCSSLQGLFLSNNSLS 383 (788)
Q Consensus 354 ~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~ 383 (788)
++|.+.+ +|. .+++|+.|++++|+++
T Consensus 109 s~N~l~~-l~~---~l~~L~~L~L~~N~l~ 134 (622)
T 3g06_A 109 FSNPLTH-LPA---LPSGLCKLWIFGNQLT 134 (622)
T ss_dssp CSCCCCC-CCC---CCTTCCEEECCSSCCS
T ss_pred cCCcCCC-CCC---CCCCcCEEECCCCCCC
Confidence 6666653 222 3455666666666555
No 66
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.92 E-value=6.2e-24 Score=237.24 Aligned_cols=114 Identities=27% Similarity=0.307 Sum_probs=79.1
Q ss_pred CcCEEEccCCcCcccCChhhhhcCCCCcEEEeeCCcCCCCCCccccCCCCCCEEEccCCcCCCccchHHhhCCCCCcEEE
Q 003893 249 QLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLA 328 (788)
Q Consensus 249 ~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~ 328 (788)
.++.|++++|.++ .+|..++ ++|++|++++|.++. +|. .+++|++|++++|.++ .+|. .+++|++|+
T Consensus 41 ~l~~L~ls~n~L~-~lp~~l~---~~L~~L~L~~N~l~~-lp~---~l~~L~~L~Ls~N~l~-~lp~----~l~~L~~L~ 107 (622)
T 3g06_A 41 GNAVLNVGESGLT-TLPDCLP---AHITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLT-SLPV----LPPGLLELS 107 (622)
T ss_dssp CCCEEECCSSCCS-CCCSCCC---TTCSEEEECSCCCSC-CCC---CCTTCCEEEECSCCCS-CCCC----CCTTCCEEE
T ss_pred CCcEEEecCCCcC-ccChhhC---CCCcEEEecCCCCCC-CCC---cCCCCCEEEcCCCcCC-cCCC----CCCCCCEEE
Confidence 4777888888777 6676553 578888888887773 444 4677888888888877 6665 467788888
Q ss_pred ccccccCccccccccCCCccCceeccCccCcccCCccCCCCCCCcEEEcccCcCC
Q 003893 329 LSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLS 383 (788)
Q Consensus 329 l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~ 383 (788)
+++|.+++... .+++|+.|++++|++.. +|.. +++|++|++++|.++
T Consensus 108 Ls~N~l~~l~~----~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~ 154 (622)
T 3g06_A 108 IFSNPLTHLPA----LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLA 154 (622)
T ss_dssp ECSCCCCCCCC----CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS
T ss_pred CcCCcCCCCCC----CCCCcCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCC
Confidence 88887776433 45778888888887764 3332 366667777666665
No 67
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.92 E-value=2.8e-26 Score=251.64 Aligned_cols=235 Identities=22% Similarity=0.182 Sum_probs=131.1
Q ss_pred CccCceeccCccCcccCCccCCCCCCCcEEEcccCcCCCCCCccccCCCCccEEEccCCeeccCchhhhhcccCCcEEec
Q 003893 346 TNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDI 425 (788)
Q Consensus 346 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l 425 (788)
++|++|++++|.+.+..|..|..+++|++|++++|.+++..| +..+++|++|++++|.+.+..+ .++|+.|++
T Consensus 34 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~-----~~~L~~L~L 106 (487)
T 3oja_A 34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV-----GPSIETLHA 106 (487)
T ss_dssp GGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE-----CTTCCEEEC
T ss_pred CCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC-----CCCcCEEEC
Confidence 355555555555554444455555555555555555543332 4445555555555554442221 144444444
Q ss_pred cCCcCCCCCCCCCCCCcccEEEccCcccccccCcccccccccccEEeCCCCccCCCCCccccCCcCCcEEEccCccCccc
Q 003893 426 SDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGE 505 (788)
Q Consensus 426 ~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~ 505 (788)
++|.+. +..+ ..+++|++|++++|.+++..|..+..+++|+.|++++|.+++.
T Consensus 107 ~~N~l~-----------------------~~~~----~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 159 (487)
T 3oja_A 107 ANNNIS-----------------------RVSC----SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTV 159 (487)
T ss_dssp CSSCCC-----------------------CEEE----CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEE
T ss_pred cCCcCC-----------------------CCCc----cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCc
Confidence 444433 2111 2245677777777777766666666677777777777777766
Q ss_pred Cccccc-CCCCCCEEEccCCcCCccCcccccccchhhhccCCCCCCCcccceeecCCcccCcccccccceEeeecCceec
Q 003893 506 VPIQLC-RLNQLQLLDLSNNNLHGHIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYT 584 (788)
Q Consensus 506 ~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~ 584 (788)
.|..+. .+++|++|++++|.+++..+..
T Consensus 160 ~~~~l~~~l~~L~~L~Ls~N~l~~~~~~~--------------------------------------------------- 188 (487)
T 3oja_A 160 NFAELAASSDTLEHLNLQYNFIYDVKGQV--------------------------------------------------- 188 (487)
T ss_dssp EGGGGGGGTTTCCEEECTTSCCCEEECCC---------------------------------------------------
T ss_pred ChHHHhhhCCcccEEecCCCccccccccc---------------------------------------------------
Confidence 665554 5677777777777665442211
Q ss_pred ccCCccCCCceEECCCCcccccCcccccccccCCeEeCCCCCCCCCCCcccCCCCCCCeeeCCCcccC-ccCchhhhcCC
Q 003893 585 YQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLS-WKIPYQLVELN 663 (788)
Q Consensus 585 ~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~l~~l~ 663 (788)
..++|+.|+|++|.+++..| .+..+++|+.|+|++|.+++ +|..+..+++|+.|++++|++. +.+|..+..++
T Consensus 189 ----~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~ 262 (487)
T 3oja_A 189 ----VFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQ 262 (487)
T ss_dssp ----CCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCH
T ss_pred ----cCCCCCEEECCCCCCCCCCH-hHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHHHhCC
Confidence 01256666666666665443 36666666666666666664 4555666666666666666665 44455555555
Q ss_pred CCcEEecc
Q 003893 664 TLAVFSVA 671 (788)
Q Consensus 664 ~L~~L~l~ 671 (788)
.|+.++++
T Consensus 263 ~L~~l~~~ 270 (487)
T 3oja_A 263 RVQTVAKQ 270 (487)
T ss_dssp HHHHHHHH
T ss_pred CCcEEecc
Confidence 55554443
No 68
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.92 E-value=3.9e-24 Score=216.22 Aligned_cols=186 Identities=24% Similarity=0.257 Sum_probs=146.0
Q ss_pred ccccEEeCCCCccCCCCCccccCCcCCcEEEccCccCcccCcccccCCCCCCEEEccCCcCCccCcccccccchhhhccC
Q 003893 466 LTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHERYNN 545 (788)
Q Consensus 466 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~ 545 (788)
+++++|++++|++++..+..|..+++|++|++++|.++...+..|..+++|++|++++|++.+..+..|..+.
T Consensus 37 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~------- 109 (270)
T 2o6q_A 37 ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLV------- 109 (270)
T ss_dssp TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCS-------
T ss_pred CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHccccc-------
Confidence 4677888888887766666777788888888888887765566667788888888888887766665555444
Q ss_pred CCCCCCcccceeecCCcccCcccccccceEeeecCceecccCCccCCCceEECCCCcccccCcccccccccCCeEeCCCC
Q 003893 546 GSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHN 625 (788)
Q Consensus 546 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N 625 (788)
+|++|++++|.+++..+..|..+++|++|+|++|
T Consensus 110 ----------------------------------------------~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n 143 (270)
T 2o6q_A 110 ----------------------------------------------NLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYN 143 (270)
T ss_dssp ----------------------------------------------SCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred ----------------------------------------------CCCEEECCCCccCeeCHHHhCcCcCCCEEECCCC
Confidence 6888888888888777777888888888888888
Q ss_pred CCCCCCCcccCCCCCCCeeeCCCcccCccCchhhhcCCCCcEEecccCcCcccCCCCccccCCCCcCCcCCCCCCCCCC
Q 003893 626 NLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSGKIPERAAQFATFNESSYEGNPFLCGPP 704 (788)
Q Consensus 626 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~~~~~~Np~~C~~~ 704 (788)
++++..+..|..+++|++|++++|+++...+..|..+++|+.|++++|++++..+..+..+++++.+++.+|||.|+|+
T Consensus 144 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 222 (270)
T 2o6q_A 144 ELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTCN 222 (270)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCSSS
T ss_pred cCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCCCc
Confidence 8887776778888888888888888887666677888888888888888887777667778888888888888888886
No 69
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.92 E-value=1.7e-26 Score=238.84 Aligned_cols=154 Identities=29% Similarity=0.335 Sum_probs=97.9
Q ss_pred ccccEEeCCCCccCCCCCccccCCcCCcEEEccCccCccc--Ccccc--cCCCCCCEEEccCCcCCccCc---ccccccc
Q 003893 466 LTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGE--VPIQL--CRLNQLQLLDLSNNNLHGHIP---SCFDNTT 538 (788)
Q Consensus 466 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~--~~~~~--~~l~~L~~L~L~~n~l~~~~~---~~~~~~~ 538 (788)
++|++|++++|++.+..+..+..+++|++|++++|++.+. .+..+ ..+++|++|++++|++++... ..+..++
T Consensus 149 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~ 228 (312)
T 1wwl_A 149 PGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARV 228 (312)
T ss_dssp TTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTC
T ss_pred CCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCC
Confidence 5666666666666666656666677777777777765543 12223 566777777777776653211 1111111
Q ss_pred hhhhccCCCCCCCcccceeecCCcccCcccccccceEeeecCceecccCCccCCCceEECCCCcccccCc-ccccccccC
Q 003893 539 LHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIP-PQIGNLTKI 617 (788)
Q Consensus 539 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~-~~~~~l~~L 617 (788)
+|++|++++|.+++..| ..+..+++|
T Consensus 229 -----------------------------------------------------~L~~L~Ls~N~l~~~~~~~~~~~l~~L 255 (312)
T 1wwl_A 229 -----------------------------------------------------QLQGLDLSHNSLRDAAGAPSCDWPSQL 255 (312)
T ss_dssp -----------------------------------------------------CCSEEECTTSCCCSSCCCSCCCCCTTC
T ss_pred -----------------------------------------------------CCCEEECCCCcCCcccchhhhhhcCCC
Confidence 57777777777776553 445556777
Q ss_pred CeEeCCCCCCCCCCCcccCCCCCCCeeeCCCcccCccCchhhhcCCCCcEEecccCcCcc
Q 003893 618 QTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSG 677 (788)
Q Consensus 618 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~ 677 (788)
++|+|++|+++ .+|..+. ++|++||+++|+|++. |. +..+++|++|++++|++++
T Consensus 256 ~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 256 NSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp CEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred CEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence 77777777777 4555554 6777777777777754 44 6777777777777777764
No 70
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.92 E-value=3e-24 Score=218.13 Aligned_cols=207 Identities=25% Similarity=0.292 Sum_probs=155.6
Q ss_pred ccEEEccCcccccccCcccccccccccEEeCCCCccCCCCCccccCCcCCcEEEccCccCcccCcccccCCCCCCEEEcc
Q 003893 443 IEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLS 522 (788)
Q Consensus 443 L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 522 (788)
+++|++++|.+.+ ++...|.++++|++|++++|.+++..+..|..+++|++|++++|.+++..+..+.++++|++|+++
T Consensus 30 l~~L~ls~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 108 (276)
T 2z62_A 30 TKNLDLSFNPLRH-LGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV 108 (276)
T ss_dssp CCEEECTTCCCCE-ECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred ccEEECCCCcccc-cCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECC
Confidence 4444444444432 333367777888888888888876666678888888888888888887777778888888888888
Q ss_pred CCcCCccCcccccccchhhhccCCCCCCCcccceeecCCcccCcccccccceEeeecCceecccCCccCCCceEECCCCc
Q 003893 523 NNNLHGHIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNR 602 (788)
Q Consensus 523 ~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~ 602 (788)
+|.+.+..+..+..+. +|++|++++|.
T Consensus 109 ~n~l~~~~~~~~~~l~-----------------------------------------------------~L~~L~l~~n~ 135 (276)
T 2z62_A 109 ETNLASLENFPIGHLK-----------------------------------------------------TLKELNVAHNL 135 (276)
T ss_dssp TSCCCCSTTCCCTTCT-----------------------------------------------------TCCEEECCSSC
T ss_pred CCCccccCchhcccCC-----------------------------------------------------CCCEEECcCCc
Confidence 8888766655554443 78888888888
Q ss_pred cccc-CcccccccccCCeEeCCCCCCCCCCCcccCCCCCCC----eeeCCCcccCccCchhhhcCCCCcEEecccCcCcc
Q 003893 603 LIGH-IPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIE----SLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSG 677 (788)
Q Consensus 603 l~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~----~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~ 677 (788)
+++. +|..+..+++|++|++++|++++..+..|..+++|+ +|++++|++++..+..+. ..+|+.|++++|.+++
T Consensus 136 l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~-~~~L~~L~L~~n~l~~ 214 (276)
T 2z62_A 136 IQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFK-EIRLKELALDTNQLKS 214 (276)
T ss_dssp CCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSC-SCCEEEEECCSSCCSC
T ss_pred cceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccC-CCcccEEECCCCceee
Confidence 8764 477888888888888888888877777777666666 788888888866555544 3478888888888887
Q ss_pred cCCCCccccCCCCcCCcCCCCCCCCCC
Q 003893 678 KIPERAAQFATFNESSYEGNPFLCGPP 704 (788)
Q Consensus 678 ~~~~~~~~~~~l~~~~~~~Np~~C~~~ 704 (788)
..+..+..+++++.+++.+||+.|+|+
T Consensus 215 ~~~~~~~~l~~L~~L~l~~N~~~c~c~ 241 (276)
T 2z62_A 215 VPDGIFDRLTSLQKIWLHTNPWDCSCP 241 (276)
T ss_dssp CCTTTTTTCCSCCEEECCSSCBCCCTT
T ss_pred cCHhHhcccccccEEEccCCcccccCC
Confidence 777767788888888888888888886
No 71
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.92 E-value=1e-27 Score=272.96 Aligned_cols=82 Identities=13% Similarity=0.067 Sum_probs=41.4
Q ss_pred CCceEECCCCcccccCcccc-cccccCCeEeCCCCCCCCCCCc-ccCCCCCCCeeeCCCcccCccCchhh-hcCCCCcEE
Q 003893 592 LLSGLDLSCNRLIGHIPPQI-GNLTKIQTLNLSHNNLAGPIPS-TFSNLRNIESLDLSYNKLSWKIPYQL-VELNTLAVF 668 (788)
Q Consensus 592 ~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~l-~~l~~L~~L 668 (788)
+|+.|++++|.+++..+..+ ..+++|+.|+|++|.+++.... ....+++|++|++++|+++......+ ..++.|+..
T Consensus 457 ~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~lp~l~i~ 536 (594)
T 2p1m_B 457 KMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVE 536 (594)
T ss_dssp TCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBHHHHHHHHHHCTTEEEE
T ss_pred hccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCHHHHHHHHHhCCCCEEE
Confidence 56666666666554333333 4456666666666666432222 23345666666666666643333333 334555444
Q ss_pred ecccC
Q 003893 669 SVAYN 673 (788)
Q Consensus 669 ~l~~N 673 (788)
.+..+
T Consensus 537 ~~~~~ 541 (594)
T 2p1m_B 537 VIDER 541 (594)
T ss_dssp EECSS
T ss_pred EecCC
Confidence 44433
No 72
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.92 E-value=2e-27 Score=270.47 Aligned_cols=430 Identities=13% Similarity=0.115 Sum_probs=216.6
Q ss_pred hhHhhhcCCCCCEEeCCCCCCCCcccCCCCc------------cCCCCCCCEEEcCCCCCCCCccHhhh-cCCCCCEEeC
Q 003893 38 LQIIGESMPSIQYLSLSNSSVSNNSRTLDQG------------LCPLVHLQELHMADNDLRGSLPWCLA-NMTSLRILDV 104 (788)
Q Consensus 38 ~~~~~~~l~~L~~L~L~~~~l~~~~~~l~~~------------l~~l~~L~~L~L~~n~i~~~~~~~~~-~l~~L~~L~L 104 (788)
+..+...+++|++|+++++.........|.. ...+++|++|+|++|.+++..+..+. .+++|++|++
T Consensus 58 ~~~~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L 137 (594)
T 2p1m_B 58 PATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVL 137 (594)
T ss_dssp HHHHHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEE
T ss_pred HHHHHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeC
Confidence 3333334888888888887521111111111 23567788888888877766666665 6788888888
Q ss_pred CCC-cCcCC-CChhhhcCCCCCCEEEcCCCcccCccC--c-cccCCCCCccEEEccCCc--cchhhhccccCCCCccccc
Q 003893 105 SSN-QLIGS-ISSSPLIHLTSIEDLILSDNHFQIPIS--L-EPLFNHSRLKIFDAENNE--INAEIIESHSLTTPNFQLQ 177 (788)
Q Consensus 105 s~n-~l~~~-~~~~~l~~l~~L~~L~l~~n~~~~~~~--~-~~l~~l~~L~~L~l~~n~--~~~~~~~~~~~~~~~~~L~ 177 (788)
++| .+.+. ++. .+.++++|++|++++|.+++... . .....+++|+.|++++|. +....
T Consensus 138 ~~~~~~~~~~l~~-~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~-------------- 202 (594)
T 2p1m_B 138 SSCEGFSTDGLAA-IAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSA-------------- 202 (594)
T ss_dssp ESCEEEEHHHHHH-HHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHH--------------
T ss_pred CCcCCCCHHHHHH-HHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHH--------------
Confidence 877 33321 222 33467888888888877653211 1 122356677777776664 11110
Q ss_pred EEEccCCCcCCccCCccccCCCCCcEEEecCCCCCccCchHHhhcCCCCCEEEccCCc-------ccCcCccCccCCCCc
Q 003893 178 SLLLSSGYRDGITFPKFLYNQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDS-------LVGPFRLPIHSHKQL 250 (788)
Q Consensus 178 ~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-------~~~~~~~~~~~~~~L 250 (788)
+......+++|++|++++|...+.++. .+..+++|++|++..+. +.+. +..+..+++|
T Consensus 203 -------------l~~l~~~~~~L~~L~L~~~~~~~~l~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~l-~~~l~~~~~L 267 (594)
T 2p1m_B 203 -------------LERLVTRCPNLKSLKLNRAVPLEKLAT-LLQRAPQLEELGTGGYTAEVRPDVYSGL-SVALSGCKEL 267 (594)
T ss_dssp -------------HHHHHHHCTTCCEEECCTTSCHHHHHH-HHHHCTTCSEEECSBCCCCCCHHHHHHH-HHHHHTCTTC
T ss_pred -------------HHHHHHhCCCCcEEecCCCCcHHHHHH-HHhcCCcceEcccccccCccchhhHHHH-HHHHhcCCCc
Confidence 111223467788888887743233333 34678888888865542 1111 2245567777
Q ss_pred CEE-EccCCcCcccCChhhhhcCCCCcEEEeeCCcCCCCCC-ccccCCCCCCEEEccCCcCCCccchHHhhCCCCCcEEE
Q 003893 251 RLL-DVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIP-SSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLA 328 (788)
Q Consensus 251 ~~L-~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~ 328 (788)
+.+ .+.+... +.++..+. .+++|++|++++|.+++... ..+..+++|++|++++| +.+.....+...+++|++|+
T Consensus 268 ~~Ls~~~~~~~-~~l~~~~~-~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~ 344 (594)
T 2p1m_B 268 RCLSGFWDAVP-AYLPAVYS-VCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELR 344 (594)
T ss_dssp CEEECCBTCCG-GGGGGGHH-HHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEE
T ss_pred ccccCCcccch-hhHHHHHH-hhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEE
Confidence 777 3433222 12332222 35677777777777543221 22456677777777766 33222233333467777777
Q ss_pred ccc---------cccCcccccccc-CCCccCceeccCccCcccCCccCC-CCCCCcEEEcc--c----CcCCCCCC----
Q 003893 329 LSN---------NNLEGHMFSRNF-NLTNLIWLQLEGNHFVGEIPQSLS-KCSSLQGLFLS--N----NSLSGKIP---- 387 (788)
Q Consensus 329 l~~---------n~i~~~~~~~~~-~l~~L~~L~l~~n~~~~~~~~~~~-~l~~L~~L~l~--~----n~l~~~~~---- 387 (788)
+.+ +.++......+. ++++|++|.+..+.++......+. .+++|+.|+++ + +.++....
T Consensus 345 L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~ 424 (594)
T 2p1m_B 345 VFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGF 424 (594)
T ss_dssp EECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHH
T ss_pred EecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHH
Confidence 733 223222111111 255566665555555433222222 35556666655 2 22221100
Q ss_pred -ccccCCCCccEEEccCCeeccCchhhhhc-ccCCcEEeccCCcCCCCCCCCCCCCcccEEEccCcccccccCccccccc
Q 003893 388 -RWLGNLTVLRHIIMPKNHIEGPIPLEFCQ-LRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNC 465 (788)
Q Consensus 388 -~~l~~l~~L~~L~l~~n~~~~~~~~~~~~-l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~ 465 (788)
..+..+++|+.|++++ .+++.....+.. +++|+.|++++|.+ .+........++
T Consensus 425 ~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i-----------------------~~~~~~~l~~~~ 480 (594)
T 2p1m_B 425 GAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGD-----------------------SDLGMHHVLSGC 480 (594)
T ss_dssp HHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCS-----------------------SHHHHHHHHHHC
T ss_pred HHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCC-----------------------cHHHHHHHHhcC
Confidence 0123344444444433 222222222222 34444444444433 222222122456
Q ss_pred ccccEEeCCCCccCCCCCc-cccCCcCCcEEEccCccCcccCcccc-cCCCCCCEEEccCC
Q 003893 466 LTLMILDLSYNHLNGNIPD-RVDGLSQLSYLILAHNNLEGEVPIQL-CRLNQLQLLDLSNN 524 (788)
Q Consensus 466 ~~L~~L~l~~n~i~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~L~~n 524 (788)
++|++|++++|.+++.... ....+++|++|++++|+++......+ ..+|+|+...+..+
T Consensus 481 ~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~lp~l~i~~~~~~ 541 (594)
T 2p1m_B 481 DSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVIDER 541 (594)
T ss_dssp TTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBHHHHHHHHHHCTTEEEEEECSS
T ss_pred CCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCHHHHHHHHHhCCCCEEEEecCC
Confidence 6777777777766432222 23446677777777776643322233 34566655555444
No 73
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.91 E-value=4e-25 Score=242.41 Aligned_cols=248 Identities=21% Similarity=0.194 Sum_probs=208.2
Q ss_pred CCCCCCcEEEcccCcCCCCCCccccCCCCccEEEccCCeeccCchhhhhcccCCcEEeccCCcCCCCCCCCCCCCcccEE
Q 003893 367 SKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQV 446 (788)
Q Consensus 367 ~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L 446 (788)
..+++|++|++++|.+.+..|..+..+++|+.|++++|.+.+..+ +..+++|++|++++|.+++
T Consensus 31 ~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-------------- 94 (487)
T 3oja_A 31 QSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQE-------------- 94 (487)
T ss_dssp TTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEE--------------
T ss_pred ccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCC--------------
Confidence 345689999999999998888899999999999999999987665 8889999999999998752
Q ss_pred EccCcccccccCcccccccccccEEeCCCCccCCCCCccccCCcCCcEEEccCccCcccCcccccCCCCCCEEEccCCcC
Q 003893 447 HLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNL 526 (788)
Q Consensus 447 ~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 526 (788)
+...++|++|++++|.+++..+. .+++|+.|++++|.+++..|..+..+++|++|++++|.+
T Consensus 95 ---------------l~~~~~L~~L~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l 156 (487)
T 3oja_A 95 ---------------LLVGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEI 156 (487)
T ss_dssp ---------------EEECTTCCEEECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCC
T ss_pred ---------------CCCCCCcCEEECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCC
Confidence 22237899999999999876543 468899999999999988888999999999999999999
Q ss_pred CccCccccc-ccchhhhccCCCCCCCcccceeecCCcccCcccccccceEeeecCceecccCCccCCCceEECCCCcccc
Q 003893 527 HGHIPSCFD-NTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIG 605 (788)
Q Consensus 527 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~ 605 (788)
++.+|..+. .++ +|+.|+|++|.+++
T Consensus 157 ~~~~~~~l~~~l~-----------------------------------------------------~L~~L~Ls~N~l~~ 183 (487)
T 3oja_A 157 DTVNFAELAASSD-----------------------------------------------------TLEHLNLQYNFIYD 183 (487)
T ss_dssp CEEEGGGGGGGTT-----------------------------------------------------TCCEEECTTSCCCE
T ss_pred CCcChHHHhhhCC-----------------------------------------------------cccEEecCCCcccc
Confidence 987776664 333 89999999999997
Q ss_pred cCcccccccccCCeEeCCCCCCCCCCCcccCCCCCCCeeeCCCcccCccCchhhhcCCCCcEEecccCcCc-ccCCCCcc
Q 003893 606 HIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLS-GKIPERAA 684 (788)
Q Consensus 606 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~-~~~~~~~~ 684 (788)
..+ +..+++|+.|+|++|++++..| .|..+++|+.|++++|.+++ +|..+..+++|+.|++++|++. +.+|..+.
T Consensus 184 ~~~--~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~ 259 (487)
T 3oja_A 184 VKG--QVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFS 259 (487)
T ss_dssp EEC--CCCCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHHT
T ss_pred ccc--cccCCCCCEEECCCCCCCCCCH-hHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHHH
Confidence 633 4468999999999999997555 48899999999999999995 6778889999999999999998 45555556
Q ss_pred ccCCCCcCCcC-------CCCCCCCCCC
Q 003893 685 QFATFNESSYE-------GNPFLCGPPL 705 (788)
Q Consensus 685 ~~~~l~~~~~~-------~Np~~C~~~~ 705 (788)
.++.+..+.+. +||+.|.|+.
T Consensus 260 ~l~~L~~l~~~~~~~~~~~~~~~c~~~~ 287 (487)
T 3oja_A 260 KNQRVQTVAKQTVKKLTGQNEEECTVPT 287 (487)
T ss_dssp TCHHHHHHHHHHHHHHTSSSSCCCSSTT
T ss_pred hCCCCcEEeccccccccCCCcccccCCc
Confidence 66666655654 8999998864
No 74
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.91 E-value=8.1e-26 Score=233.78 Aligned_cols=250 Identities=26% Similarity=0.273 Sum_probs=143.4
Q ss_pred cccCCCCCCEEEccCCcCCCccchHHhhCCCCCcEEEccccccCcc-cccccc-------CCCccCceeccCccCcccCC
Q 003893 292 SFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGH-MFSRNF-------NLTNLIWLQLEGNHFVGEIP 363 (788)
Q Consensus 292 ~~~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~l~~n~i~~~-~~~~~~-------~l~~L~~L~l~~n~~~~~~~ 363 (788)
.++..++|+.|++++|.+ .+|..+... |+.|++++|.+... .+..+. ++++|++|++++|.+.+..|
T Consensus 38 ~~~~~~~L~~l~l~~n~l--~~p~~~~~~---L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 112 (312)
T 1wwl_A 38 LYGGGRSLEYLLKRVDTE--ADLGQFTDI---IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAP 112 (312)
T ss_dssp EEEEEEECTTHHHHCCTT--CCCHHHHHH---HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCC
T ss_pred EEccCCCceeEeeccccc--ccHHHHHHH---HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhH
Confidence 345567788888888888 677776642 77778888877432 222222 45666666666666665555
Q ss_pred ccC--CCCCCCcEEEcccCcCCCCCCccccCC-----CCccEEEccCCeeccCchhhhhcccCCcEEeccCCcCCCCCCC
Q 003893 364 QSL--SKCSSLQGLFLSNNSLSGKIPRWLGNL-----TVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPS 436 (788)
Q Consensus 364 ~~~--~~l~~L~~L~l~~n~l~~~~~~~l~~l-----~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~ 436 (788)
..+ ..+++|++|++++|.+++. |..+..+ ++|++|++++|.+.+..+..+..++
T Consensus 113 ~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~------------------ 173 (312)
T 1wwl_A 113 PPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFP------------------ 173 (312)
T ss_dssp CCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCS------------------
T ss_pred HHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCC------------------
Confidence 544 5566666666666666544 4444333 4444444444444443334444444
Q ss_pred CCCCCcccEEEccCcccccccCcccccccccccEEeCCCCccCCC--CCccc--cCCcCCcEEEccCccCcc---cCccc
Q 003893 437 CYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGN--IPDRV--DGLSQLSYLILAHNNLEG---EVPIQ 509 (788)
Q Consensus 437 ~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~--~~~~~--~~l~~L~~L~L~~n~l~~---~~~~~ 509 (788)
+|++|++++|++.+. .+..+ ..+++|++|++++|++++ .....
T Consensus 174 ------------------------------~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 223 (312)
T 1wwl_A 174 ------------------------------ALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSAL 223 (312)
T ss_dssp ------------------------------SCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHH
T ss_pred ------------------------------CCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHH
Confidence 444444444443321 11111 445555555555555542 11123
Q ss_pred ccCCCCCCEEEccCCcCCccCcc-cccccchhhhccCCCCCCCcccceeecCCcccCcccccccceEeeecCceecccCC
Q 003893 510 LCRLNQLQLLDLSNNNLHGHIPS-CFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGR 588 (788)
Q Consensus 510 ~~~l~~L~~L~L~~n~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~ 588 (788)
+..+++|++|++++|++++..|. .+..+
T Consensus 224 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l--------------------------------------------------- 252 (312)
T 1wwl_A 224 AAARVQLQGLDLSHNSLRDAAGAPSCDWP--------------------------------------------------- 252 (312)
T ss_dssp HHTTCCCSEEECTTSCCCSSCCCSCCCCC---------------------------------------------------
T ss_pred HhcCCCCCEEECCCCcCCcccchhhhhhc---------------------------------------------------
Confidence 34556666666666666654421 11111
Q ss_pred ccCCCceEECCCCcccccCcccccccccCCeEeCCCCCCCCCCCcccCCCCCCCeeeCCCcccCc
Q 003893 589 VPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSW 653 (788)
Q Consensus 589 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 653 (788)
++|++|++++|.++ .+|..+. ++|++|+|++|++++. |. +..+++|++|++++|++++
T Consensus 253 --~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 253 --SQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp --TTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred --CCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence 26777777777776 5555554 7788888888888765 54 7778888888888888764
No 75
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.91 E-value=8.8e-24 Score=215.23 Aligned_cols=208 Identities=25% Similarity=0.233 Sum_probs=143.1
Q ss_pred hhcccCCcEEeccCCcCCCCCCCCCCCCcccEEEccCcccccccCcccccccccccEEeCCCCccCCCCCccccCCcCCc
Q 003893 414 FCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLS 493 (788)
Q Consensus 414 ~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~ 493 (788)
+..+++++.++++++.++. +|. .+ .+.+++|++++|.+++..+..|..+++|+
T Consensus 6 ~~~l~~l~~l~~~~~~l~~------------------------ip~-~~--~~~l~~L~L~~N~l~~~~~~~~~~l~~L~ 58 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTA------------------------LPP-DL--PKDTTILHLSENLLYTFSLATLMPYTRLT 58 (290)
T ss_dssp EECSTTCCEEECTTSCCSS------------------------CCS-CC--CTTCCEEECTTSCCSEEEGGGGTTCTTCC
T ss_pred ccccCCccEEECCCCCCCc------------------------CCC-CC--CCCCCEEEcCCCcCCccCHHHhhcCCCCC
Confidence 3456667777777776653 222 11 14567777777777666666677777777
Q ss_pred EEEccCccCcccCcccccCCCCCCEEEccCCcCCccCcccccccchhhhccCCCCCCCcccceeecCCcccCcccccccc
Q 003893 494 YLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILES 573 (788)
Q Consensus 494 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 573 (788)
+|++++|.+++..+ ...+++|++|++++|+++.. |..+..+.
T Consensus 59 ~L~L~~n~l~~~~~--~~~l~~L~~L~Ls~N~l~~l-~~~~~~l~----------------------------------- 100 (290)
T 1p9a_G 59 QLNLDRAELTKLQV--DGTLPVLGTLDLSHNQLQSL-PLLGQTLP----------------------------------- 100 (290)
T ss_dssp EEECTTSCCCEEEC--CSCCTTCCEEECCSSCCSSC-CCCTTTCT-----------------------------------
T ss_pred EEECCCCccCcccC--CCCCCcCCEEECCCCcCCcC-chhhccCC-----------------------------------
Confidence 77777777764332 25677777777777777632 33332222
Q ss_pred eEeeecCceecccCCccCCCceEECCCCcccccCcccccccccCCeEeCCCCCCCCCCCcccCCCCCCCeeeCCCcccCc
Q 003893 574 FDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSW 653 (788)
Q Consensus 574 l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 653 (788)
+|++|++++|++++..+..|..+++|+.|+|++|++++..+..|..+++|++|++++|+++.
T Consensus 101 ------------------~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 162 (290)
T 1p9a_G 101 ------------------ALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTE 162 (290)
T ss_dssp ------------------TCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSC
T ss_pred ------------------CCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCc
Confidence 67777777777776666777778888888888888887777777778888888888888876
Q ss_pred cCchhhhcCCCCcEEecccCcCcccCCCCccccCCCCcCCcCCCCCCCCCCC
Q 003893 654 KIPYQLVELNTLAVFSVAYNNLSGKIPERAAQFATFNESSYEGNPFLCGPPL 705 (788)
Q Consensus 654 ~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~~~~~~Np~~C~~~~ 705 (788)
..+..|..+++|+.|++++|+++ .+|..+.....++.+.+.+|||.|+|+.
T Consensus 163 l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C~c~~ 213 (290)
T 1p9a_G 163 LPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLCNCEI 213 (290)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCCSGGG
T ss_pred cCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCccCcCcc
Confidence 55556677788888888888887 4555556666777788888888888763
No 76
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.91 E-value=1.8e-23 Score=212.40 Aligned_cols=208 Identities=24% Similarity=0.295 Sum_probs=116.7
Q ss_pred CccEEEccCCeeccCchhhhhcccCCcEEeccCCcCCCCCCCCCCCCcccEEEccCcccccccCcccccccccccEEeCC
Q 003893 395 VLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLS 474 (788)
Q Consensus 395 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~ 474 (788)
+|++|++++|.+.+..+..|.++++|++|++++|.+.+ ++...|.++++|++|+++
T Consensus 29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~------------------------~~~~~~~~l~~L~~L~L~ 84 (276)
T 2z62_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQT------------------------IEDGAYQSLSHLSTLILT 84 (276)
T ss_dssp TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCE------------------------ECTTTTTTCTTCCEEECT
T ss_pred CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCc------------------------cCHHHccCCcCCCEEECC
Confidence 34445555544444444444455555555555554431 122234445555555555
Q ss_pred CCccCCCCCccccCCcCCcEEEccCccCcccCcccccCCCCCCEEEccCCcCCcc-CcccccccchhhhccCCCCCCCcc
Q 003893 475 YNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGH-IPSCFDNTTLHERYNNGSSLQPFE 553 (788)
Q Consensus 475 ~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 553 (788)
+|.+++..+..+.++++|++|++++|.+.+..+..+..+++|++|++++|.+.+. .|..+..++
T Consensus 85 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~--------------- 149 (276)
T 2z62_A 85 GNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLT--------------- 149 (276)
T ss_dssp TCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCT---------------
T ss_pred CCccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCC---------------
Confidence 5555544444555555555555555555544444455555555555555555543 244443333
Q ss_pred cceeecCCcccCcccccccceEeeecCceecccCCccCCCceEECCCCcccccCcccccccccCC----eEeCCCCCCCC
Q 003893 554 TSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQ----TLNLSHNNLAG 629 (788)
Q Consensus 554 ~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~----~L~Ls~N~l~~ 629 (788)
+|++|++++|++++..+..+..+++|+ .|++++|++++
T Consensus 150 --------------------------------------~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~ 191 (276)
T 2z62_A 150 --------------------------------------NLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNF 191 (276)
T ss_dssp --------------------------------------TCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCE
T ss_pred --------------------------------------CCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccc
Confidence 556666666666655555565555555 67777777775
Q ss_pred CCCcccCCCCCCCeeeCCCcccCccCchhhhcCCCCcEEecccCcCcccCC
Q 003893 630 PIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSGKIP 680 (788)
Q Consensus 630 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~ 680 (788)
..+..+.. .+|++|++++|++++..+..+..+++|+.|++++|+++|..|
T Consensus 192 ~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 241 (276)
T 2z62_A 192 IQPGAFKE-IRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 241 (276)
T ss_dssp ECTTSSCS-CCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTT
T ss_pred cCccccCC-CcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCC
Confidence 55544443 467777777777776555566777777777777777776655
No 77
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.90 E-value=1.7e-22 Score=204.19 Aligned_cols=167 Identities=25% Similarity=0.253 Sum_probs=120.9
Q ss_pred cccccccccEEeCCCCccCCCCCccccCCcCCcEEEccCccCcccCcccccCCCCCCEEEccCCcCCccCcccccccchh
Q 003893 461 TFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLH 540 (788)
Q Consensus 461 ~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~ 540 (788)
.|.++++|++|++++|.++...+..|.++++|++|++++|.+++..+..+..+++|++|++++|.+++..+..|..++
T Consensus 56 ~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-- 133 (270)
T 2o6q_A 56 AFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLT-- 133 (270)
T ss_dssp SSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCT--
T ss_pred HhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCc--
Confidence 555666666666666666655555556666677777776666655555566677777777777777666555554443
Q ss_pred hhccCCCCCCCcccceeecCCcccCcccccccceEeeecCceecccCCccCCCceEECCCCcccccCcccccccccCCeE
Q 003893 541 ERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTL 620 (788)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 620 (788)
+|++|++++|.+++..+..|..+++|+.|
T Consensus 134 ---------------------------------------------------~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 162 (270)
T 2o6q_A 134 ---------------------------------------------------KLTYLSLGYNELQSLPKGVFDKLTSLKEL 162 (270)
T ss_dssp ---------------------------------------------------TCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred ---------------------------------------------------CCCEEECCCCcCCccCHhHccCCccccee
Confidence 67777777777776666667888888888
Q ss_pred eCCCCCCCCCCCcccCCCCCCCeeeCCCcccCccCchhhhcCCCCcEEecccCcCcccCC
Q 003893 621 NLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSGKIP 680 (788)
Q Consensus 621 ~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~ 680 (788)
+|++|++++..+..|..+++|++|++++|+++...+..+..+++|+.|++++|++.+..+
T Consensus 163 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 222 (270)
T 2o6q_A 163 RLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTCN 222 (270)
T ss_dssp ECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCSSS
T ss_pred EecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCCCc
Confidence 888888887777778888888888888888887666677888888888888888887654
No 78
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.89 E-value=2e-22 Score=203.77 Aligned_cols=209 Identities=24% Similarity=0.281 Sum_probs=164.6
Q ss_pred cCCCCccEEEccCCeeccCchhhhhcccCCcEEeccCCcCCCCCCCCCCCCcccEEEccCcccccccCcccccccccccE
Q 003893 391 GNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMI 470 (788)
Q Consensus 391 ~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~ 470 (788)
..+++|+.|++++|.+... ..+..+++|++|++++|.+. + ++ .+..+++|++
T Consensus 38 ~~l~~L~~L~l~~~~i~~~--~~l~~l~~L~~L~l~~n~l~-----------------------~-~~--~l~~l~~L~~ 89 (272)
T 3rfs_A 38 NELNSIDQIIANNSDIKSV--QGIQYLPNVRYLALGGNKLH-----------------------D-IS--ALKELTNLTY 89 (272)
T ss_dssp HHHTTCCEEECTTSCCCCC--TTGGGCTTCCEEECTTSCCC-----------------------C-CG--GGTTCTTCCE
T ss_pred ccccceeeeeeCCCCcccc--cccccCCCCcEEECCCCCCC-----------------------C-ch--hhcCCCCCCE
Confidence 3455556666665555422 23455555555555555543 2 22 5778889999
Q ss_pred EeCCCCccCCCCCccccCCcCCcEEEccCccCcccCcccccCCCCCCEEEccCCcCCccCcccccccchhhhccCCCCCC
Q 003893 471 LDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHERYNNGSSLQ 550 (788)
Q Consensus 471 L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~ 550 (788)
|++++|.+++..+..+..+++|++|++++|++++..+..+..+++|++|++++|.+++..+..+..++
T Consensus 90 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~------------ 157 (272)
T 3rfs_A 90 LILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLT------------ 157 (272)
T ss_dssp EECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT------------
T ss_pred EECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCc------------
Confidence 99999999887777788899999999999999877777788999999999999999877776665554
Q ss_pred CcccceeecCCcccCcccccccceEeeecCceecccCCccCCCceEECCCCcccccCcccccccccCCeEeCCCCCCCCC
Q 003893 551 PFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGP 630 (788)
Q Consensus 551 ~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 630 (788)
+|+.|++++|++++..+..+..+++|+.|++++|++++.
T Consensus 158 -----------------------------------------~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 196 (272)
T 3rfs_A 158 -----------------------------------------NLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSV 196 (272)
T ss_dssp -----------------------------------------TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred -----------------------------------------cCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCcc
Confidence 799999999999988888889999999999999999988
Q ss_pred CCcccCCCCCCCeeeCCCcccCccCchhhhcCCCCcEEecccCcCcccCCCCccccC
Q 003893 631 IPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSGKIPERAAQFA 687 (788)
Q Consensus 631 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~ 687 (788)
.+..|..+++|++|++++|++.+. +++|+.++++.|.++|.+|..++.+.
T Consensus 197 ~~~~~~~l~~L~~L~l~~N~~~~~-------~~~l~~l~~~~n~~~g~ip~~~~~~~ 246 (272)
T 3rfs_A 197 PDGVFDRLTSLQYIWLHDNPWDCT-------CPGIRYLSEWINKHSGVVRNSAGSVA 246 (272)
T ss_dssp CTTTTTTCTTCCEEECCSSCBCCC-------TTTTHHHHHHHHHTGGGBBCTTSCBC
T ss_pred CHHHHhCCcCCCEEEccCCCcccc-------CcHHHHHHHHHHhCCCcccCcccccC
Confidence 888899999999999999998754 45788899999999999988655443
No 79
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.88 E-value=5.9e-22 Score=201.70 Aligned_cols=205 Identities=23% Similarity=0.191 Sum_probs=118.4
Q ss_pred CCCCCCCcEEEcccCcCCCCCCccccCCCCccEEEccCCeeccCchhhhhcccCCcEEeccCCcCCCCCCCCCCCCcccE
Q 003893 366 LSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQ 445 (788)
Q Consensus 366 ~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~ 445 (788)
+..++++++++++++.++ .+|..+. ++++.|++++|.+.+..+..|..+++|+.|++++|.+++
T Consensus 6 ~~~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~------------- 69 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK------------- 69 (290)
T ss_dssp EECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCE-------------
T ss_pred ccccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCc-------------
Confidence 445666777777777766 3343332 466666666666666556666666666666666665541
Q ss_pred EEccCcccccccCcccccccccccEEeCCCCccCCCCCccccCCcCCcEEEccCccCcccCcccccCCCCCCEEEccCCc
Q 003893 446 VHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNN 525 (788)
Q Consensus 446 L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 525 (788)
++. ...+++|++|++++|+++ .+|..+..+++|++|++++|++++..+..|..+++|++|++
T Consensus 70 -----------~~~--~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L---- 131 (290)
T 1p9a_G 70 -----------LQV--DGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYL---- 131 (290)
T ss_dssp -----------EEC--CSCCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEEC----
T ss_pred -----------ccC--CCCCCcCCEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEEC----
Confidence 111 134455666666666655 34444555555555555555555444444555555555554
Q ss_pred CCccCcccccccchhhhccCCCCCCCcccceeecCCcccCcccccccceEeeecCceecccCCccCCCceEECCCCcccc
Q 003893 526 LHGHIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIG 605 (788)
Q Consensus 526 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~ 605 (788)
++|++++
T Consensus 132 -------------------------------------------------------------------------~~N~l~~ 138 (290)
T 1p9a_G 132 -------------------------------------------------------------------------KGNELKT 138 (290)
T ss_dssp -------------------------------------------------------------------------TTSCCCC
T ss_pred -------------------------------------------------------------------------CCCCCCc
Confidence 4454444
Q ss_pred cCcccccccccCCeEeCCCCCCCCCCCcccCCCCCCCeeeCCCcccCccCchhhhcCCCCcEEecccCcCccc
Q 003893 606 HIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSGK 678 (788)
Q Consensus 606 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~ 678 (788)
..+..|..+++|+.|+|++|++++..+..|..+++|++|++++|+++ .+|..+....+|+.+++++|++.+.
T Consensus 139 ~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C~ 210 (290)
T 1p9a_G 139 LPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLCN 210 (290)
T ss_dssp CCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCCS
T ss_pred cChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCccCc
Confidence 44445555666666666666666555555566666666666666666 4555555566666666666666653
No 80
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.88 E-value=7.9e-22 Score=196.88 Aligned_cols=180 Identities=26% Similarity=0.252 Sum_probs=108.9
Q ss_pred cccEEEccCcccccccCcccccccccccEEeCCCCccCCCCCccccCCcCCcEEEccCccCcccCcccccCCCCCCEEEc
Q 003893 442 CIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDL 521 (788)
Q Consensus 442 ~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 521 (788)
..++++++++.+. .+|. .+. +.++.|++++|.+.+..+..|.++++|++|++++|.+++..+..+..+++|++|++
T Consensus 15 ~~~~l~~~~~~l~-~~p~-~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 90 (251)
T 3m19_A 15 GKKEVDCQGKSLD-SVPS-GIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGL 90 (251)
T ss_dssp GGTEEECTTCCCS-SCCS-CCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCeEEecCCCCcc-ccCC-CCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEEC
Confidence 3455666666554 3333 121 45666666666666655556666666666666666666555555666666666666
Q ss_pred cCCcCCccCcccccccchhhhccCCCCCCCcccceeecCCcccCcccccccceEeeecCceecccCCccCCCceEECCCC
Q 003893 522 SNNNLHGHIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCN 601 (788)
Q Consensus 522 ~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n 601 (788)
++|++++..+..|..+. +|++|++++|
T Consensus 91 ~~n~l~~~~~~~~~~l~-----------------------------------------------------~L~~L~L~~N 117 (251)
T 3m19_A 91 ANNQLASLPLGVFDHLT-----------------------------------------------------QLDKLYLGGN 117 (251)
T ss_dssp TTSCCCCCCTTTTTTCT-----------------------------------------------------TCCEEECCSS
T ss_pred CCCcccccChhHhcccC-----------------------------------------------------CCCEEEcCCC
Confidence 66666655554444433 5666666666
Q ss_pred cccccCcccccccccCCeEeCCCCCCCCCCCcccCCCCCCCeeeCCCcccCccCchhhhcCCCCcEEecccCcCccc
Q 003893 602 RLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSGK 678 (788)
Q Consensus 602 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~ 678 (788)
++++..+..|..+++|++|+|++|++++..+..|..+++|++|+|++|++++..+..+..+++|+.|++++|++++.
T Consensus 118 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 118 QLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred cCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence 66655555556666666666666666655555566666666666666666655555566666666666666666654
No 81
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.87 E-value=1.3e-21 Score=197.87 Aligned_cols=202 Identities=22% Similarity=0.251 Sum_probs=108.0
Q ss_pred CcEEeccCCcCCCCCCCCCCCCcccEEEccCcccccccCcccccccccccEEeCCCCccCCCCCccccCCcCCcEEEccC
Q 003893 420 LQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAH 499 (788)
Q Consensus 420 L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~ 499 (788)
+..+++..+.+... .....++.++.|.+.+|.+.. ++ .+..+++|++|++++|.+++. ..+..+++|++|++++
T Consensus 21 l~~l~l~~~~~~~~-~~~~~l~~L~~L~l~~~~i~~-~~--~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~ 94 (272)
T 3rfs_A 21 TIKANLKKKSVTDA-VTQNELNSIDQIIANNSDIKS-VQ--GIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTG 94 (272)
T ss_dssp HHHHHHTCSCTTSE-ECHHHHTTCCEEECTTSCCCC-CT--TGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTT
T ss_pred HHHHHhcCcccccc-cccccccceeeeeeCCCCccc-cc--ccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCC
Confidence 33445555544321 111224555566666555432 22 345555666666666655532 2455555666666666
Q ss_pred ccCcccCcccccCCCCCCEEEccCCcCCccCcccccccchhhhccCCCCCCCcccceeecCCcccCcccccccceEeeec
Q 003893 500 NNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTK 579 (788)
Q Consensus 500 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~ 579 (788)
|.+++..+..+..+++|++|++++|++++..+..+..+.
T Consensus 95 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~----------------------------------------- 133 (272)
T 3rfs_A 95 NQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLT----------------------------------------- 133 (272)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCT-----------------------------------------
T ss_pred CccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCC-----------------------------------------
Confidence 665554444555556666666666655555444443333
Q ss_pred CceecccCCccCCCceEECCCCcccccCcccccccccCCeEeCCCCCCCCCCCcccCCCCCCCeeeCCCcccCccCchhh
Q 003893 580 SITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQL 659 (788)
Q Consensus 580 ~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l 659 (788)
+|++|++++|.+++..+..+..+++|+.|++++|++++..+..|..+++|++|++++|++++..+..+
T Consensus 134 ------------~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~ 201 (272)
T 3rfs_A 134 ------------NLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVF 201 (272)
T ss_dssp ------------TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTT
T ss_pred ------------CCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHH
Confidence 55556666665555555555555566666666665555555555555566666666666555555555
Q ss_pred hcCCCCcEEecccCcCcccCC
Q 003893 660 VELNTLAVFSVAYNNLSGKIP 680 (788)
Q Consensus 660 ~~l~~L~~L~l~~N~l~~~~~ 680 (788)
..+++|+.|++++|++.|..|
T Consensus 202 ~~l~~L~~L~l~~N~~~~~~~ 222 (272)
T 3rfs_A 202 DRLTSLQYIWLHDNPWDCTCP 222 (272)
T ss_dssp TTCTTCCEEECCSSCBCCCTT
T ss_pred hCCcCCCEEEccCCCccccCc
Confidence 555556666666655554443
No 82
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.86 E-value=1.2e-20 Score=188.30 Aligned_cols=181 Identities=23% Similarity=0.267 Sum_probs=127.0
Q ss_pred ccccEEeCCCCccCCCCCccccCCcCCcEEEccCccCcccCcccccCCCCCCEEEccCCcCCccCcccccccchhhhccC
Q 003893 466 LTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHERYNN 545 (788)
Q Consensus 466 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~ 545 (788)
...++++++++.++ .+|..+. ++++.|++++|.+.+..+..+.++++|++|++++|.+++..+..|..+.
T Consensus 14 ~~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~------- 83 (251)
T 3m19_A 14 EGKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLT------- 83 (251)
T ss_dssp GGGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCT-------
T ss_pred CCCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCC-------
Confidence 34567777777776 3444433 4677777777777766666677777777777777777766665555444
Q ss_pred CCCCCCcccceeecCCcccCcccccccceEeeecCceecccCCccCCCceEECCCCcccccCcccccccccCCeEeCCCC
Q 003893 546 GSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHN 625 (788)
Q Consensus 546 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N 625 (788)
+|++|++++|.+++..+..|..+++|++|+|++|
T Consensus 84 ----------------------------------------------~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N 117 (251)
T 3m19_A 84 ----------------------------------------------ELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGN 117 (251)
T ss_dssp ----------------------------------------------TCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred ----------------------------------------------cCCEEECCCCcccccChhHhcccCCCCEEEcCCC
Confidence 6777777777777666666777777777777777
Q ss_pred CCCCCCCcccCCCCCCCeeeCCCcccCccCchhhhcCCCCcEEecccCcCcccCCCCccccCCCCcCCcCCCCCCCC
Q 003893 626 NLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSGKIPERAAQFATFNESSYEGNPFLCG 702 (788)
Q Consensus 626 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~~~~~~Np~~C~ 702 (788)
++++..+..|..+++|++|++++|++++..+..|..+++|+.|++++|++++..+..+..+++++.+++.+||+.|+
T Consensus 118 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 118 QLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred cCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence 77766666667777777777777777766555677777777777777777776666666777777777777777776
No 83
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.86 E-value=2.1e-22 Score=212.85 Aligned_cols=87 Identities=18% Similarity=0.231 Sum_probs=49.8
Q ss_pred CCceEECCCCccccc----Ccccccc-cccCCeEeCCCCCCCCCCC----cccCCCCCCCeeeCCCcccCccCc------
Q 003893 592 LLSGLDLSCNRLIGH----IPPQIGN-LTKIQTLNLSHNNLAGPIP----STFSNLRNIESLDLSYNKLSWKIP------ 656 (788)
Q Consensus 592 ~L~~L~Ls~n~l~~~----~~~~~~~-l~~L~~L~Ls~N~l~~~~~----~~~~~l~~L~~L~Ls~N~l~~~~~------ 656 (788)
+|++|+|++|.+++. ++..+.. .++|++|+|++|++++..+ ..+..+++|++|++++|.+....+
T Consensus 197 ~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l 276 (362)
T 3goz_A 197 SVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKAL 276 (362)
T ss_dssp TCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHH
T ss_pred CCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHH
Confidence 566666666666542 2333333 2467777777776665433 234556667777777776443222
Q ss_pred -hhhhcCCCCcEEecccCcCccc
Q 003893 657 -YQLVELNTLAVFSVAYNNLSGK 678 (788)
Q Consensus 657 -~~l~~l~~L~~L~l~~N~l~~~ 678 (788)
..+..+++|+.||+++|++...
T Consensus 277 ~~~~~~l~~L~~LdL~~N~l~~~ 299 (362)
T 3goz_A 277 GAAFPNIQKIILVDKNGKEIHPS 299 (362)
T ss_dssp HTTSTTCCEEEEECTTSCBCCGG
T ss_pred HHHhccCCceEEEecCCCcCCCc
Confidence 2445556677777777776654
No 84
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.85 E-value=5.1e-21 Score=189.59 Aligned_cols=131 Identities=18% Similarity=0.187 Sum_probs=61.1
Q ss_pred CCcEEEcccCcCCCCCCccccCCCCccEEEccCCe-eccCchhhhhcccCCcEEeccC-CcCCCCCCCCCCCCcccEEEc
Q 003893 371 SLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNH-IEGPIPLEFCQLRILQILDISD-NNISGSLPSCYDFVCIEQVHL 448 (788)
Q Consensus 371 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~-~~~~~~~~~~~l~~L~~L~l~~-n~~~~~~~~~~~~~~L~~L~l 448 (788)
++++|++++|.+++..+..+.++++|++|++++|. +.+..+..|.++++|++|++++ |.++
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~----------------- 94 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLT----------------- 94 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCC-----------------
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCee-----------------
Confidence 45555555555544433344444445555554443 4433333444444444444444 4433
Q ss_pred cCcccccccCcccccccccccEEeCCCCccCCCCCccccCCcCCc---EEEccCc-cCcccCcccccCCCCCC-EEEccC
Q 003893 449 SKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLS---YLILAHN-NLEGEVPIQLCRLNQLQ-LLDLSN 523 (788)
Q Consensus 449 ~~n~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~---~L~L~~n-~l~~~~~~~~~~l~~L~-~L~L~~ 523 (788)
.++...|.++++|++|++++|++++ +|. +..+++|+ +|++++| .+++..+..|.++++|+ +|++++
T Consensus 95 -------~i~~~~f~~l~~L~~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~ 165 (239)
T 2xwt_C 95 -------YIDPDALKELPLLKFLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYN 165 (239)
T ss_dssp -------EECTTSEECCTTCCEEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCS
T ss_pred -------EcCHHHhCCCCCCCEEeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCC
Confidence 1222244445555555555555543 332 44444444 5555555 44444444444455555 555555
Q ss_pred CcCC
Q 003893 524 NNLH 527 (788)
Q Consensus 524 n~l~ 527 (788)
|+++
T Consensus 166 n~l~ 169 (239)
T 2xwt_C 166 NGFT 169 (239)
T ss_dssp CCCC
T ss_pred CCCc
Confidence 4444
No 85
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.85 E-value=4.2e-21 Score=190.23 Aligned_cols=196 Identities=17% Similarity=0.224 Sum_probs=124.4
Q ss_pred CccEEEccCCeeccCchhhhhcccCCcEEeccCCc-CCCCCCCCCCCCcccEEEccCcccccccCcccccccccccEEeC
Q 003893 395 VLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNN-ISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDL 473 (788)
Q Consensus 395 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~-~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l 473 (788)
++++|++++|.+++..+..|.++++|++|++++|+ +. .++...|.++++|++|++
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~------------------------~i~~~~f~~l~~L~~L~l 87 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQ------------------------QLESHSFYNLSKVTHIEI 87 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCC------------------------EECTTTEESCTTCCEEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcc------------------------eeCHhHcCCCcCCcEEEC
Confidence 56666666666665555556666666666666664 43 333346677777777777
Q ss_pred CC-CccCCCCCccccCCcCCcEEEccCccCcccCcccccCCCCCC---EEEccCC-cCCccCcccccccchhhhccCCCC
Q 003893 474 SY-NHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQ---LLDLSNN-NLHGHIPSCFDNTTLHERYNNGSS 548 (788)
Q Consensus 474 ~~-n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~---~L~L~~n-~l~~~~~~~~~~~~~~~~~~~~~~ 548 (788)
++ |.+++..+..|.++++|++|++++|++++ +|. +..+++|+ +|++++| .+++..+..|..+.
T Consensus 88 ~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~---------- 155 (239)
T 2xwt_C 88 RNTRNLTYIDPDALKELPLLKFLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLC---------- 155 (239)
T ss_dssp EEETTCCEECTTSEECCTTCCEEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTB----------
T ss_pred CCCCCeeEcCHHHhCCCCCCCEEeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchh----------
Confidence 77 77776666677777777777777777764 443 66666666 7777777 66665555554443
Q ss_pred CCCcccceeecCCcccCcccccccceEeeecCceecccCCccCCCc-eEECCCCcccccCcccccccccCCeEeCCCCC-
Q 003893 549 LQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLS-GLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNN- 626 (788)
Q Consensus 549 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~-~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~- 626 (788)
+|+ +|++++|+++...+..+.. ++|+.|++++|+
T Consensus 156 -------------------------------------------~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~n~~ 191 (239)
T 2xwt_C 156 -------------------------------------------NETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNKNKY 191 (239)
T ss_dssp -------------------------------------------SSEEEEECCSCCCCEECTTTTTT-CEEEEEECTTCTT
T ss_pred -------------------------------------------cceeEEEcCCCCCcccCHhhcCC-CCCCEEEcCCCCC
Confidence 566 6777777766444444444 667777777773
Q ss_pred CCCCCCcccCCC-CCCCeeeCCCcccCccCchhhhcCCCCcEEecccC
Q 003893 627 LAGPIPSTFSNL-RNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYN 673 (788)
Q Consensus 627 l~~~~~~~~~~l-~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N 673 (788)
+++..+..|..+ ++|++|++++|+++...+ . .+++|+.|+++++
T Consensus 192 l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~-~--~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 192 LTVIDKDAFGGVYSGPSLLDVSQTSVTALPS-K--GLEHLKELIARNT 236 (239)
T ss_dssp CCEECTTTTTTCSBCCSEEECTTCCCCCCCC-T--TCTTCSEEECTTC
T ss_pred cccCCHHHhhccccCCcEEECCCCccccCCh-h--HhccCceeeccCc
Confidence 665556666666 677777777777664332 2 4456666666654
No 86
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.84 E-value=6.7e-21 Score=196.71 Aligned_cols=202 Identities=22% Similarity=0.257 Sum_probs=122.1
Q ss_pred ccCCcEEeccCCcCCCCCCCC---CCCCcccEEEccCcccccccC---cccccccccccEEeCCCCccCCCCCccccCCc
Q 003893 417 LRILQILDISDNNISGSLPSC---YDFVCIEQVHLSKNMLHGQLK---EGTFFNCLTLMILDLSYNHLNGNIPDRVDGLS 490 (788)
Q Consensus 417 l~~L~~L~l~~n~~~~~~~~~---~~~~~L~~L~l~~n~~~~~~~---~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~ 490 (788)
+++|++|++++|.+.+..+.. ..+++|++|++++|.+.+..+ ...+..+++|++|++++|++.+..+..+..++
T Consensus 90 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~ 169 (310)
T 4glp_A 90 YSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFP 169 (310)
T ss_dssp HSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCT
T ss_pred cCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCC
Confidence 344555555555555444432 224444444444444443222 12334677777888888777766667777777
Q ss_pred CCcEEEccCccCccc--C--cccccCCCCCCEEEccCCcCCccCcc---cccccchhhhccCCCCCCCcccceeecCCcc
Q 003893 491 QLSYLILAHNNLEGE--V--PIQLCRLNQLQLLDLSNNNLHGHIPS---CFDNTTLHERYNNGSSLQPFETSFVIMGGMD 563 (788)
Q Consensus 491 ~L~~L~L~~n~l~~~--~--~~~~~~l~~L~~L~L~~n~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 563 (788)
+|++|++++|++.+. . +..+..+++|++|++++|.++...+. .+..+.
T Consensus 170 ~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~------------------------- 224 (310)
T 4glp_A 170 ALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGV------------------------- 224 (310)
T ss_dssp TCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTC-------------------------
T ss_pred CCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCC-------------------------
Confidence 788888887776532 1 22235677777777777777532221 111211
Q ss_pred cCcccccccceEeeecCceecccCCccCCCceEECCCCcccccCccccccc---ccCCeEeCCCCCCCCCCCcccCCCCC
Q 003893 564 VDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNL---TKIQTLNLSHNNLAGPIPSTFSNLRN 640 (788)
Q Consensus 564 ~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l---~~L~~L~Ls~N~l~~~~~~~~~~l~~ 640 (788)
+|++|++++|++++..|..+..+ ++|++|+|++|+++ .+|..+. ++
T Consensus 225 ----------------------------~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~ 273 (310)
T 4glp_A 225 ----------------------------QPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AK 273 (310)
T ss_dssp ----------------------------CCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SC
T ss_pred ----------------------------CCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CC
Confidence 67777777777776666666555 57777777777777 4455543 67
Q ss_pred CCeeeCCCcccCccCchhhhcCCCCcEEecccCcCc
Q 003893 641 IESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLS 676 (788)
Q Consensus 641 L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~ 676 (788)
|++|++++|++++. |. +..+++|+.|++++|+++
T Consensus 274 L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~l~ 307 (310)
T 4glp_A 274 LRVLDLSSNRLNRA-PQ-PDELPEVDNLTLDGNPFL 307 (310)
T ss_dssp CSCEECCSCCCCSC-CC-TTSCCCCSCEECSSTTTS
T ss_pred CCEEECCCCcCCCC-ch-hhhCCCccEEECcCCCCC
Confidence 77777777777743 32 456677777777777765
No 87
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.84 E-value=3.9e-22 Score=210.81 Aligned_cols=269 Identities=21% Similarity=0.185 Sum_probs=138.2
Q ss_pred EEccCCcCCCccchHHhhCCCCCcEEEccccccCcccc----ccccCCC-ccCceeccCccCcccCCccCCCCCCCcEEE
Q 003893 302 LDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMF----SRNFNLT-NLIWLQLEGNHFVGEIPQSLSKCSSLQGLF 376 (788)
Q Consensus 302 L~L~~n~i~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~----~~~~~l~-~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~ 376 (788)
++++.|.+++.+|... ...++|++|++++|.++...+ ..+..++ +|++|++++|.+.+..+..+..+
T Consensus 3 ~~ls~n~~~~~~~~~~-~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~------- 74 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFT-SIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQI------- 74 (362)
T ss_dssp EECCCCTTCCHHHHHH-TSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHH-------
T ss_pred cccccccchHHHHHHH-hCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHH-------
Confidence 4566666664444433 233446666666666655444 3344444 45555555555544333333322
Q ss_pred cccCcCCCCCCccccC-CCCccEEEccCCeeccCchhhhh----cc-cCCcEEeccCCcCCCCCCCCCCCCcccEEEccC
Q 003893 377 LSNNSLSGKIPRWLGN-LTVLRHIIMPKNHIEGPIPLEFC----QL-RILQILDISDNNISGSLPSCYDFVCIEQVHLSK 450 (788)
Q Consensus 377 l~~n~l~~~~~~~l~~-l~~L~~L~l~~n~~~~~~~~~~~----~l-~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~ 450 (788)
+.. .++|++|++++|.+.+..+..+. .+ ++|++|++++|.+.+..+..
T Consensus 75 -------------l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~------------- 128 (362)
T 3goz_A 75 -------------LAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSE------------- 128 (362)
T ss_dssp -------------HHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHH-------------
T ss_pred -------------HhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHH-------------
Confidence 000 14444444444444443333222 22 45555555555543221100
Q ss_pred cccccccCcccccc-cccccEEeCCCCccCCCCCc----cccCCc-CCcEEEccCccCcccCccc----ccCC-CCCCEE
Q 003893 451 NMLHGQLKEGTFFN-CLTLMILDLSYNHLNGNIPD----RVDGLS-QLSYLILAHNNLEGEVPIQ----LCRL-NQLQLL 519 (788)
Q Consensus 451 n~~~~~~~~~~~~~-~~~L~~L~l~~n~i~~~~~~----~~~~l~-~L~~L~L~~n~l~~~~~~~----~~~l-~~L~~L 519 (788)
+. ..+.. .++|++|++++|.+++..+. .+..++ +|++|++++|++++..+.. +..+ ++|++|
T Consensus 129 ------l~-~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L 201 (362)
T 3goz_A 129 ------FK-QAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSL 201 (362)
T ss_dssp ------HH-HHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEE
T ss_pred ------HH-HHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEE
Confidence 00 01222 23566666666665533222 223333 6666666666666544432 3334 377777
Q ss_pred EccCCcCCccCcccccccchhhhccCCCCCCCcccceeecCCcccCcccccccceEeeecCceecccCCccCCCceEECC
Q 003893 520 DLSNNNLHGHIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLS 599 (788)
Q Consensus 520 ~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~Ls 599 (788)
++++|.+.+.....+...- ...+++|++|+++
T Consensus 202 ~Ls~N~i~~~~~~~l~~~l------------------------------------------------~~~~~~L~~L~Ls 233 (362)
T 3goz_A 202 DLSANLLGLKSYAELAYIF------------------------------------------------SSIPNHVVSLNLC 233 (362)
T ss_dssp ECTTSCGGGSCHHHHHHHH------------------------------------------------HHSCTTCCEEECC
T ss_pred ECCCCCCChhHHHHHHHHH------------------------------------------------hcCCCCceEEECc
Confidence 7777776643222111100 0112367777777
Q ss_pred CCcccccCc----ccccccccCCeEeCCCCCCCCCCC-------cccCCCCCCCeeeCCCcccCccCchhh
Q 003893 600 CNRLIGHIP----PQIGNLTKIQTLNLSHNNLAGPIP-------STFSNLRNIESLDLSYNKLSWKIPYQL 659 (788)
Q Consensus 600 ~n~l~~~~~----~~~~~l~~L~~L~Ls~N~l~~~~~-------~~~~~l~~L~~L~Ls~N~l~~~~~~~l 659 (788)
+|.+++..+ ..+..+++|+.|+|++|.+.+..+ ..+..+++|+.||+++|++....+..+
T Consensus 234 ~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~~~~~~ 304 (362)
T 3goz_A 234 LNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSIPI 304 (362)
T ss_dssp SSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGGGCHHH
T ss_pred CCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCcchHHH
Confidence 777765443 334566778888888887554333 356778888889999998876644443
No 88
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.84 E-value=1.6e-22 Score=216.09 Aligned_cols=89 Identities=19% Similarity=0.284 Sum_probs=67.1
Q ss_pred CCceEECCCCccc----ccCcccccccccCCeEeCCCCCCCCC----CCcccC--CCCCCCeeeCCCcccCc----cCch
Q 003893 592 LLSGLDLSCNRLI----GHIPPQIGNLTKIQTLNLSHNNLAGP----IPSTFS--NLRNIESLDLSYNKLSW----KIPY 657 (788)
Q Consensus 592 ~L~~L~Ls~n~l~----~~~~~~~~~l~~L~~L~Ls~N~l~~~----~~~~~~--~l~~L~~L~Ls~N~l~~----~~~~ 657 (788)
+|+.|+|++|.++ ..+|..+..+++|+.|+|++|++++. ++..+. .+++|++|+|++|.++. .+|.
T Consensus 217 ~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~ 296 (386)
T 2ca6_A 217 ELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKT 296 (386)
T ss_dssp TCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHH
T ss_pred CccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHH
Confidence 6777777777775 45667778888888888888888754 355553 37888888888888886 3676
Q ss_pred hh-hcCCCCcEEecccCcCcccCC
Q 003893 658 QL-VELNTLAVFSVAYNNLSGKIP 680 (788)
Q Consensus 658 ~l-~~l~~L~~L~l~~N~l~~~~~ 680 (788)
.+ .++++|+.|++++|++++..+
T Consensus 297 ~l~~~l~~L~~L~l~~N~l~~~~~ 320 (386)
T 2ca6_A 297 VIDEKMPDLLFLELNGNRFSEEDD 320 (386)
T ss_dssp HHHHHCTTCCEEECTTSBSCTTSH
T ss_pred HHHhcCCCceEEEccCCcCCcchh
Confidence 66 557888888888888887653
No 89
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.84 E-value=3.9e-20 Score=190.30 Aligned_cols=194 Identities=23% Similarity=0.301 Sum_probs=135.6
Q ss_pred CCCCccEEEccCCeeccCchhhhhcccCCcEEeccCCcCCCCCCCCCCCCcccEEEccCcccccccCcccccccccccEE
Q 003893 392 NLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMIL 471 (788)
Q Consensus 392 ~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L 471 (788)
.+++|++|++++|.+... + .+..+++|++|++++|.+.+ ++. +..+++|++|
T Consensus 39 ~l~~L~~L~l~~~~i~~l-~-~~~~l~~L~~L~L~~n~i~~------------------------~~~--~~~l~~L~~L 90 (308)
T 1h6u_A 39 DLDGITTLSAFGTGVTTI-E-GVQYLNNLIGLELKDNQITD------------------------LAP--LKNLTKITEL 90 (308)
T ss_dssp HHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCC------------------------CGG--GTTCCSCCEE
T ss_pred HcCCcCEEEeeCCCccCc-h-hhhccCCCCEEEccCCcCCC------------------------Chh--HccCCCCCEE
Confidence 455566666666655532 2 35555666666666665542 222 6677788888
Q ss_pred eCCCCccCCCCCccccCCcCCcEEEccCccCcccCcccccCCCCCCEEEccCCcCCccCcccccccchhhhccCCCCCCC
Q 003893 472 DLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHERYNNGSSLQP 551 (788)
Q Consensus 472 ~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~ 551 (788)
++++|.+++. ..+..+++|++|++++|.+++. + .+..+++|++|++++|.+++..+ +..+.
T Consensus 91 ~L~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~~~~--l~~l~------------- 151 (308)
T 1h6u_A 91 ELSGNPLKNV--SAIAGLQSIKTLDLTSTQITDV-T-PLAGLSNLQVLYLDLNQITNISP--LAGLT------------- 151 (308)
T ss_dssp ECCSCCCSCC--GGGTTCTTCCEEECTTSCCCCC-G-GGTTCTTCCEEECCSSCCCCCGG--GGGCT-------------
T ss_pred EccCCcCCCc--hhhcCCCCCCEEECCCCCCCCc-h-hhcCCCCCCEEECCCCccCcCcc--ccCCC-------------
Confidence 8888887743 3577788888888888887743 3 37778888888888888775543 33322
Q ss_pred cccceeecCCcccCcccccccceEeeecCceecccCCccCCCceEECCCCcccccCcccccccccCCeEeCCCCCCCCCC
Q 003893 552 FETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPI 631 (788)
Q Consensus 552 ~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 631 (788)
+|+.|++++|.+++..+ +..+++|+.|++++|++++..
T Consensus 152 ----------------------------------------~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~ 189 (308)
T 1h6u_A 152 ----------------------------------------NLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISDIS 189 (308)
T ss_dssp ----------------------------------------TCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCG
T ss_pred ----------------------------------------CccEEEccCCcCCCChh--hcCCCCCCEEECCCCccCcCh
Confidence 68888888888875433 778888888888888888654
Q ss_pred CcccCCCCCCCeeeCCCcccCccCchhhhcCCCCcEEecccCcCccc
Q 003893 632 PSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSGK 678 (788)
Q Consensus 632 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~ 678 (788)
+ +..+++|++|++++|++++.. .+..+++|+.|++++|++++.
T Consensus 190 ~--l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~~~ 232 (308)
T 1h6u_A 190 P--LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTITNQ 232 (308)
T ss_dssp G--GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEECC
T ss_pred h--hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeeecC
Confidence 3 778888888888888888544 377888888888888888763
No 90
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.83 E-value=1.3e-21 Score=205.16 Aligned_cols=234 Identities=15% Similarity=0.140 Sum_probs=135.4
Q ss_pred CCCcEEEcccCcCCCCCCccccCCCCccEEEccCCeeccC-chhhhhcccCCcEEeccCCcCCCCCCCCCCCCcccEEEc
Q 003893 370 SSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGP-IPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHL 448 (788)
Q Consensus 370 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~-~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l 448 (788)
+.++.|++++|.+.+..+. +..+++|++|++++|.+.+. .+..+..+++|++|++++|.+.+
T Consensus 70 ~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~---------------- 132 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSD---------------- 132 (336)
T ss_dssp TTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCH----------------
T ss_pred ccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCH----------------
Confidence 4555555555555544333 33456666666666665543 45555666666666666665432
Q ss_pred cCcccccccCcccccccccccEEeCCCC-ccCCC-CCccccCCcCCcEEEccCc-cCccc-CcccccCCC-CCCEEEccC
Q 003893 449 SKNMLHGQLKEGTFFNCLTLMILDLSYN-HLNGN-IPDRVDGLSQLSYLILAHN-NLEGE-VPIQLCRLN-QLQLLDLSN 523 (788)
Q Consensus 449 ~~n~~~~~~~~~~~~~~~~L~~L~l~~n-~i~~~-~~~~~~~l~~L~~L~L~~n-~l~~~-~~~~~~~l~-~L~~L~L~~ 523 (788)
..+. .+..+++|++|++++| .+++. .+..+..+++|++|++++| .+++. .+..+..++ +|++|++++
T Consensus 133 -------~~~~-~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~ 204 (336)
T 2ast_B 133 -------PIVN-TLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSG 204 (336)
T ss_dssp -------HHHH-HHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCS
T ss_pred -------HHHH-HHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCC
Confidence 1111 3445566666666666 34431 3344555666666666666 56533 344556666 777777777
Q ss_pred Cc--CC-ccCcccccccchhhhccCCCCCCCcccceeecCCcccCcccccccceEeeecCceecccCCccCCCceEECCC
Q 003893 524 NN--LH-GHIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSC 600 (788)
Q Consensus 524 n~--l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~Ls~ 600 (788)
|. ++ +..+..+..++ +|++|++++
T Consensus 205 ~~~~~~~~~l~~~~~~~~-----------------------------------------------------~L~~L~l~~ 231 (336)
T 2ast_B 205 YRKNLQKSDLSTLVRRCP-----------------------------------------------------NLVHLDLSD 231 (336)
T ss_dssp CGGGSCHHHHHHHHHHCT-----------------------------------------------------TCSEEECTT
T ss_pred CcccCCHHHHHHHHhhCC-----------------------------------------------------CCCEEeCCC
Confidence 63 33 22222222222 677777777
Q ss_pred Cc-ccccCcccccccccCCeEeCCCCC-CCCCCCcccCCCCCCCeeeCCCcccCccCchhhhcCCCCcEEecccCcCccc
Q 003893 601 NR-LIGHIPPQIGNLTKIQTLNLSHNN-LAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSGK 678 (788)
Q Consensus 601 n~-l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~ 678 (788)
|. +++..+..+..+++|++|++++|. +.......+..+++|++|++++| ++...-..+. .++..|++++|.+++.
T Consensus 232 ~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~~~~~~l~--~~l~~L~l~~n~l~~~ 308 (336)
T 2ast_B 232 SVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDGTLQLLK--EALPHLQINCSHFTTI 308 (336)
T ss_dssp CTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCTTCHHHHH--HHSTTSEESCCCSCCT
T ss_pred CCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCHHHHHHHH--hhCcceEEecccCccc
Confidence 77 555666677788888888888885 22111125677888888888888 4432222222 2355566888888887
Q ss_pred CCCCcc
Q 003893 679 IPERAA 684 (788)
Q Consensus 679 ~~~~~~ 684 (788)
.|..+.
T Consensus 309 ~~~~~~ 314 (336)
T 2ast_B 309 ARPTIG 314 (336)
T ss_dssp TCSSCS
T ss_pred cCCccc
Confidence 776543
No 91
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.83 E-value=1.2e-21 Score=205.46 Aligned_cols=200 Identities=21% Similarity=0.210 Sum_probs=115.2
Q ss_pred CCCEEEccCCcCCCccchHHhhCC--CCCcEEEccccccCccccccccCCCccCceeccCccCccc-CCccCCCCCCCcE
Q 003893 298 FLQFLDLSNNQLTGEIPEHLAMGC--VSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGE-IPQSLSKCSSLQG 374 (788)
Q Consensus 298 ~L~~L~L~~n~i~~~~~~~~~~~l--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~-~~~~~~~l~~L~~ 374 (788)
.++.++++++.+. +..+ ..+ ++++.|++++|.+.+..+. +..+++|++|++++|.+.+. .+..+..+++|++
T Consensus 48 ~~~~l~l~~~~~~---~~~~-~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~ 122 (336)
T 2ast_B 48 LWQTLDLTGKNLH---PDVT-GRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQN 122 (336)
T ss_dssp TSSEEECTTCBCC---HHHH-HHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSE
T ss_pred hheeeccccccCC---HHHH-HhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCE
Confidence 4778888888765 2222 234 6788888888877765544 34567777777777766543 4555666667777
Q ss_pred EEcccCcCCCCCCccccCCCCccEEEccCC-eeccC-chhhhhcccCCcEEeccCC-cCCCCCCCCCCCCcccEEEccCc
Q 003893 375 LFLSNNSLSGKIPRWLGNLTVLRHIIMPKN-HIEGP-IPLEFCQLRILQILDISDN-NISGSLPSCYDFVCIEQVHLSKN 451 (788)
Q Consensus 375 L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n-~~~~~-~~~~~~~l~~L~~L~l~~n-~~~~~~~~~~~~~~L~~L~l~~n 451 (788)
|++++|.+++..+..+..+++|++|++++| .+++. .+..+..+++|++|++++| .+++.
T Consensus 123 L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~------------------ 184 (336)
T 2ast_B 123 LSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEK------------------ 184 (336)
T ss_dssp EECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHH------------------
T ss_pred EeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChH------------------
Confidence 777776666555555555666666666666 34432 3444555566666666655 44310
Q ss_pred ccccccCcccccccc-cccEEeCCCCc--cC-CCCCccccCCcCCcEEEccCcc-CcccCcccccCCCCCCEEEccCCc
Q 003893 452 MLHGQLKEGTFFNCL-TLMILDLSYNH--LN-GNIPDRVDGLSQLSYLILAHNN-LEGEVPIQLCRLNQLQLLDLSNNN 525 (788)
Q Consensus 452 ~~~~~~~~~~~~~~~-~L~~L~l~~n~--i~-~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~ 525 (788)
.++. .+..++ +|++|++++|. ++ +.++..+..+++|++|++++|. +++..+..+..+++|++|++++|.
T Consensus 185 ----~~~~-~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~ 258 (336)
T 2ast_B 185 ----HVQV-AVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCY 258 (336)
T ss_dssp ----HHHH-HHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCT
T ss_pred ----HHHH-HHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCC
Confidence 0111 345556 66666666663 32 1233344455666666666665 444444455555555555555553
No 92
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.82 E-value=2.9e-20 Score=191.97 Aligned_cols=227 Identities=19% Similarity=0.184 Sum_probs=170.6
Q ss_pred CCCcEEEecCCCCCccCchHH--hhcCCCCCEEEccCCcccCcCccCc--cCCCCcCEEEccCCcCcccCC----hhhhh
Q 003893 199 HDLEYVRLSHIKMNEEFPNWL--LENNTKLRQLSLVNDSLVGPFRLPI--HSHKQLRLLDVSKNNFQGHIP----LEIGD 270 (788)
Q Consensus 199 ~~L~~L~l~~~~~~~~~~~~~--~~~l~~L~~L~l~~~~~~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~----~~~~~ 270 (788)
..++.+.+.++.++......+ ...+++|++|++++|.+.+..+..+ ..+++|++|++++|.+++..+ ..+.
T Consensus 64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~- 142 (310)
T 4glp_A 64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQW- 142 (310)
T ss_dssp CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTT-
T ss_pred cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhh-
Confidence 357788888887754322211 1245779999999999998888777 889999999999999986554 2223
Q ss_pred cCCCCcEEEeeCCcCCCCCCccccCCCCCCEEEccCCcCCCc--cch-HHhhCCCCCcEEEccccccCccccc---cccC
Q 003893 271 ILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGE--IPE-HLAMGCVSLRSLALSNNNLEGHMFS---RNFN 344 (788)
Q Consensus 271 ~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~--~~~-~~~~~l~~L~~L~l~~n~i~~~~~~---~~~~ 344 (788)
.+++|++|++++|.+.+..+..++.+++|++|++++|++.+. ++. .....+++|++|++++|.++..... .+..
T Consensus 143 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~ 222 (310)
T 4glp_A 143 LKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAA 222 (310)
T ss_dssp BCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHH
T ss_pred hccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhc
Confidence 478999999999999988888899999999999999987632 222 2224678899999999988643221 2456
Q ss_pred CCccCceeccCccCcccCCccCCCC---CCCcEEEcccCcCCCCCCccccCCCCccEEEccCCeeccCchhhhhcccCCc
Q 003893 345 LTNLIWLQLEGNHFVGEIPQSLSKC---SSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQ 421 (788)
Q Consensus 345 l~~L~~L~l~~n~~~~~~~~~~~~l---~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~ 421 (788)
+++|++|++++|.+.+..|..+..+ ++|++|++++|.++ .+|..+. ++|++|++++|++++. |. +..+++|+
T Consensus 223 l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~ 297 (310)
T 4glp_A 223 GVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVD 297 (310)
T ss_dssp TCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCS
T ss_pred CCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCcc
Confidence 7889999999999887767666666 68888999888888 5565553 7888888888888754 22 56778888
Q ss_pred EEeccCCcCC
Q 003893 422 ILDISDNNIS 431 (788)
Q Consensus 422 ~L~l~~n~~~ 431 (788)
.|++++|+++
T Consensus 298 ~L~L~~N~l~ 307 (310)
T 4glp_A 298 NLTLDGNPFL 307 (310)
T ss_dssp CEECSSTTTS
T ss_pred EEECcCCCCC
Confidence 8888888775
No 93
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.82 E-value=8.5e-22 Score=210.53 Aligned_cols=244 Identities=18% Similarity=0.223 Sum_probs=176.6
Q ss_pred CccccCCCCccEEEccCCeeccCchh----hhhcccCCcEEeccCCcCCCCCCCCCCCCcccEEEccCcccccccCc---
Q 003893 387 PRWLGNLTVLRHIIMPKNHIEGPIPL----EFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKE--- 459 (788)
Q Consensus 387 ~~~l~~l~~L~~L~l~~n~~~~~~~~----~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~--- 459 (788)
+..+..+++|++|++++|.+....+. .+..+++|++|++++|.+.. +.+.+|.
T Consensus 25 ~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~--------------------l~~~~~~~~~ 84 (386)
T 2ca6_A 25 FAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGR--------------------VKDEIPEALR 84 (386)
T ss_dssp SHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTS--------------------CGGGSHHHHH
T ss_pred HHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCc--------------------cccchhHHHH
Confidence 33445556666666666666554333 35567777777777764431 1112221
Q ss_pred ---ccccccccccEEeCCCCccCC----CCCccccCCcCCcEEEccCccCcccCccc----ccCC---------CCCCEE
Q 003893 460 ---GTFFNCLTLMILDLSYNHLNG----NIPDRVDGLSQLSYLILAHNNLEGEVPIQ----LCRL---------NQLQLL 519 (788)
Q Consensus 460 ---~~~~~~~~L~~L~l~~n~i~~----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~----~~~l---------~~L~~L 519 (788)
..+..+++|++|++++|.+++ .++..+..+++|++|++++|.++...+.. +..+ ++|++|
T Consensus 85 ~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L 164 (386)
T 2ca6_A 85 LLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSI 164 (386)
T ss_dssp HHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEE
T ss_pred HHHHHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEE
Confidence 134677888888888888876 35567778888999999999886443333 3333 899999
Q ss_pred EccCCcCCc-cCc---ccccccchhhhccCCCCCCCcccceeecCCcccCcccccccceEeeecCceecccCCccCCCce
Q 003893 520 DLSNNNLHG-HIP---SCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSG 595 (788)
Q Consensus 520 ~L~~n~l~~-~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~ 595 (788)
++++|+++. ..+ ..+... ++|++
T Consensus 165 ~L~~n~l~~~~~~~l~~~l~~~-----------------------------------------------------~~L~~ 191 (386)
T 2ca6_A 165 ICGRNRLENGSMKEWAKTFQSH-----------------------------------------------------RLLHT 191 (386)
T ss_dssp ECCSSCCTGGGHHHHHHHHHHC-----------------------------------------------------TTCCE
T ss_pred ECCCCCCCcHHHHHHHHHHHhC-----------------------------------------------------CCcCE
Confidence 999999873 222 122222 27999
Q ss_pred EECCCCcccc-----cCcccccccccCCeEeCCCCCCC----CCCCcccCCCCCCCeeeCCCcccCcc----Cchhhhc-
Q 003893 596 LDLSCNRLIG-----HIPPQIGNLTKIQTLNLSHNNLA----GPIPSTFSNLRNIESLDLSYNKLSWK----IPYQLVE- 661 (788)
Q Consensus 596 L~Ls~n~l~~-----~~~~~~~~l~~L~~L~Ls~N~l~----~~~~~~~~~l~~L~~L~Ls~N~l~~~----~~~~l~~- 661 (788)
|++++|+++. ..+..+..+++|+.|+|++|.++ ..+|..+..+++|++|+|++|+++.. ++..+..
T Consensus 192 L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~ 271 (386)
T 2ca6_A 192 VKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKL 271 (386)
T ss_dssp EECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTC
T ss_pred EECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhc
Confidence 9999999873 34447889999999999999995 46778899999999999999999865 5666644
Q ss_pred -CCCCcEEecccCcCcc----cCCCCc-cccCCCCcCCcCCCCCCCCC
Q 003893 662 -LNTLAVFSVAYNNLSG----KIPERA-AQFATFNESSYEGNPFLCGP 703 (788)
Q Consensus 662 -l~~L~~L~l~~N~l~~----~~~~~~-~~~~~l~~~~~~~Np~~C~~ 703 (788)
+++|+.|++++|.+++ .+|..+ ..+++++.+++.+|++....
T Consensus 272 ~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 272 ENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp SSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred cCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence 8999999999999998 466665 56899999999999988754
No 94
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.82 E-value=1.2e-19 Score=186.80 Aligned_cols=193 Identities=21% Similarity=0.313 Sum_probs=124.1
Q ss_pred CCCCCcEEEcccCcCCCCCCccccCCCCccEEEccCCeeccCchhhhhcccCCcEEeccCCcCCCCCCCCCCCCcccEEE
Q 003893 368 KCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVH 447 (788)
Q Consensus 368 ~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~ 447 (788)
.+++|++|++++|.+.. ++ .+..+++|++|++++|.+.+..+ +..+++|++|++++|.+.+
T Consensus 39 ~l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~--------------- 99 (308)
T 1h6u_A 39 DLDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKN--------------- 99 (308)
T ss_dssp HHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSC---------------
T ss_pred HcCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCC---------------
Confidence 34455555555555543 22 35555666666666666654333 5666667777776666542
Q ss_pred ccCcccccccCcccccccccccEEeCCCCccCCCCCccccCCcCCcEEEccCccCcccCcccccCCCCCCEEEccCCcCC
Q 003893 448 LSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLH 527 (788)
Q Consensus 448 l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 527 (788)
++ .+..+++|++|++++|++++. + .+..+++|++|++++|.+++..+ +..+++|++|++++|.++
T Consensus 100 ---------~~--~~~~l~~L~~L~l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~ 164 (308)
T 1h6u_A 100 ---------VS--AIAGLQSIKTLDLTSTQITDV-T-PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVS 164 (308)
T ss_dssp ---------CG--GGTTCTTCCEEECTTSCCCCC-G-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCC
T ss_pred ---------ch--hhcCCCCCCEEECCCCCCCCc-h-hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCC
Confidence 11 345556666666666666643 2 26666677777777776664332 666777777777777766
Q ss_pred ccCcccccccchhhhccCCCCCCCcccceeecCCcccCcccccccceEeeecCceecccCCccCCCceEECCCCcccccC
Q 003893 528 GHIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHI 607 (788)
Q Consensus 528 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~ 607 (788)
+..+ +..+. +|+.|++++|.+++..
T Consensus 165 ~~~~--l~~l~-----------------------------------------------------~L~~L~l~~n~l~~~~ 189 (308)
T 1h6u_A 165 DLTP--LANLS-----------------------------------------------------KLTTLKADDNKISDIS 189 (308)
T ss_dssp CCGG--GTTCT-----------------------------------------------------TCCEEECCSSCCCCCG
T ss_pred CChh--hcCCC-----------------------------------------------------CCCEEECCCCccCcCh
Confidence 5433 33222 6777777777777543
Q ss_pred cccccccccCCeEeCCCCCCCCCCCcccCCCCCCCeeeCCCcccCc
Q 003893 608 PPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSW 653 (788)
Q Consensus 608 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 653 (788)
+ +..+++|+.|++++|++++.. .+..+++|++|++++|+++.
T Consensus 190 ~--l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 190 P--LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp G--GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEEC
T ss_pred h--hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeeec
Confidence 3 778889999999999998654 38889999999999999874
No 95
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.82 E-value=6.5e-20 Score=178.38 Aligned_cols=153 Identities=24% Similarity=0.281 Sum_probs=83.0
Q ss_pred cEEeCCCCccCCCCCccccCCcCCcEEEccCccCcccCcccccCCCCCCEEEccCCcCCccCcccccccchhhhccCCCC
Q 003893 469 MILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHERYNNGSS 548 (788)
Q Consensus 469 ~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~ 548 (788)
+.++++++.++ .+|..+. ++++.|++++|.+++..+..|..+++|++|++++|.+++..|..|..+.
T Consensus 14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~---------- 80 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLR---------- 80 (220)
T ss_dssp TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCS----------
T ss_pred CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCc----------
Confidence 56677777666 3444332 4666666666666655555666666666666666666555444444433
Q ss_pred CCCcccceeecCCcccCcccccccceEeeecCceecccCCccCCCceEECCCCcccccCcccccccccCCeEeCCCCCCC
Q 003893 549 LQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLA 628 (788)
Q Consensus 549 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 628 (788)
+|++|+|++|.+++..+..|.++++|+.|+|++|+++
T Consensus 81 -------------------------------------------~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~ 117 (220)
T 2v9t_B 81 -------------------------------------------SLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKIN 117 (220)
T ss_dssp -------------------------------------------SCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred -------------------------------------------CCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCC
Confidence 4555555555555444444455555555555555555
Q ss_pred CCCCcccCCCCCCCeeeCCCcccCccCchhhhcCCCCcEEecccCcCcc
Q 003893 629 GPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSG 677 (788)
Q Consensus 629 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~ 677 (788)
+..|..|..+++|++|+|++|++++..+..|..+++|+.|++++|++.+
T Consensus 118 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c 166 (220)
T 2v9t_B 118 CLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFIC 166 (220)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred EeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCC
Confidence 5445555555555555555555554444444445555555554444443
No 96
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.82 E-value=3.1e-19 Score=187.48 Aligned_cols=243 Identities=18% Similarity=0.135 Sum_probs=156.2
Q ss_pred CEEEccCCcCcccCChhhhhcCCCCcEEEeeCCcCCCCCCccccCCCCCCEEEccCCcCCCccchHHhhCCCCCcE-EEc
Q 003893 251 RLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRS-LAL 329 (788)
Q Consensus 251 ~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~-L~l 329 (788)
++++.++++++ .+|..+ .+++++|+|++|+++...+.+|.++++|++|+|++|++.+.+|...|.+++++.+ +.+
T Consensus 12 ~~v~C~~~~Lt-~iP~~l---~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~ 87 (350)
T 4ay9_X 12 RVFLCQESKVT-EIPSDL---PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE 87 (350)
T ss_dssp TEEEEESTTCC-SCCTTC---CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEE
T ss_pred CEEEecCCCCC-ccCcCc---CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcc
Confidence 45677777776 677655 2467777777777775555567777777777777777765666666666666554 444
Q ss_pred cccccCccccccccCCCccCceeccCccCcccCCccCCCCCCCcEEEcccCcCCCCCCccccCCCCccEEEccCCeeccC
Q 003893 330 SNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGP 409 (788)
Q Consensus 330 ~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~ 409 (788)
++|+++.+.+..|.++++|++|++++|++....+..+....++..+++.++ +.+...
T Consensus 88 ~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~-----------------------~~i~~l 144 (350)
T 4ay9_X 88 KANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDN-----------------------INIHTI 144 (350)
T ss_dssp EETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESC-----------------------TTCCEE
T ss_pred cCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccc-----------------------cccccc
Confidence 556666665666666666666666666665444444444445555555432 222222
Q ss_pred chhhhhccc-CCcEEeccCCcCCCCCCCCCCCCcccEEEccCcccccccCcccccccccccEEeCCCCccCCCCCccccC
Q 003893 410 IPLEFCQLR-ILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDG 488 (788)
Q Consensus 410 ~~~~~~~l~-~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~ 488 (788)
.+..|..+. .++.|++++|+++...+..+...+++++.+.++...+.++..+|.++++|++||+++|+++...+..+
T Consensus 145 ~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~-- 222 (350)
T 4ay9_X 145 ERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGL-- 222 (350)
T ss_dssp CTTSSTTSBSSCEEEECCSSCCCEECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSSC--
T ss_pred cccchhhcchhhhhhccccccccCCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhhh--
Confidence 233333332 45566666666665555555566666666665444457777789999999999999999996555444
Q ss_pred CcCCcEEEccCccCcccCcccccCCCCCCEEEccCC
Q 003893 489 LSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNN 524 (788)
Q Consensus 489 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 524 (788)
.+|+.|.+.++.-...+| .+..+++|+.+++.++
T Consensus 223 -~~L~~L~~l~~~~l~~lP-~l~~l~~L~~l~l~~~ 256 (350)
T 4ay9_X 223 -ENLKKLRARSTYNLKKLP-TLEKLVALMEASLTYP 256 (350)
T ss_dssp -TTCCEEECTTCTTCCCCC-CTTTCCSCCEEECSCH
T ss_pred -ccchHhhhccCCCcCcCC-CchhCcChhhCcCCCC
Confidence 556666665554333556 4788999999999764
No 97
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.82 E-value=4.8e-20 Score=193.63 Aligned_cols=238 Identities=18% Similarity=0.134 Sum_probs=114.6
Q ss_pred EEEcccCcCCCCCCccccCCCCccEEEccCCeeccCchhhhhcccCCcEEeccCCcCCCCCCC-CC-CCCcccE-EEccC
Q 003893 374 GLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPS-CY-DFVCIEQ-VHLSK 450 (788)
Q Consensus 374 ~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~-~~-~~~~L~~-L~l~~ 450 (788)
+++.++++++ .+|..+ .+++++|++++|+++.+.+.+|.++++|++|++++|++.+.++. .+ +++++.+ +.+..
T Consensus 13 ~v~C~~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~ 89 (350)
T 4ay9_X 13 VFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA 89 (350)
T ss_dssp EEEEESTTCC-SCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEE
T ss_pred EEEecCCCCC-ccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccC
Confidence 4444555544 333332 23455555555555544444555555555555555554322221 11 1222222 12222
Q ss_pred cccccccCcccccccccccEEeCCCCccCCCCCccccCCcCCcEEEccC-ccCcccCcccccCCC-CCCEEEccCCcCCc
Q 003893 451 NMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAH-NNLEGEVPIQLCRLN-QLQLLDLSNNNLHG 528 (788)
Q Consensus 451 n~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~-~L~~L~L~~n~l~~ 528 (788)
|.+. .++...|.++++|++|++++|++....+..+....++..|++.+ +.+....+..|..+. .++.|++++|+++.
T Consensus 90 N~l~-~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~ 168 (350)
T 4ay9_X 90 NNLL-YINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE 168 (350)
T ss_dssp TTCC-EECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCE
T ss_pred Cccc-ccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccC
Confidence 2222 23333566666666666666666654444444555556666644 345444444444443 45566666666655
Q ss_pred cCcccccccchhhhccCCCCCCCcccceeecCCcccCcccccccceEeeecCceecccCCccCCCceEECCC-CcccccC
Q 003893 529 HIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSC-NRLIGHI 607 (788)
Q Consensus 529 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~Ls~-n~l~~~~ 607 (788)
+.+..|... +|+.|++++ |.++.+.
T Consensus 169 i~~~~f~~~------------------------------------------------------~L~~l~l~~~n~l~~i~ 194 (350)
T 4ay9_X 169 IHNSAFNGT------------------------------------------------------QLDELNLSDNNNLEELP 194 (350)
T ss_dssp ECTTSSTTE------------------------------------------------------EEEEEECTTCTTCCCCC
T ss_pred CChhhcccc------------------------------------------------------chhHHhhccCCcccCCC
Confidence 444433221 355566653 4454444
Q ss_pred cccccccccCCeEeCCCCCCCCCCCcccCCCCCCCeeeCCCcccCccCchhhhcCCCCcEEecccC
Q 003893 608 PPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYN 673 (788)
Q Consensus 608 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N 673 (788)
+..|.++++|+.|+|++|+|+.+.+..|.++++| .+.++.-...+| .+..+++|+.++++++
T Consensus 195 ~~~f~~l~~L~~LdLs~N~l~~lp~~~~~~L~~L---~~l~~~~l~~lP-~l~~l~~L~~l~l~~~ 256 (350)
T 4ay9_X 195 NDVFHGASGPVILDISRTRIHSLPSYGLENLKKL---RARSTYNLKKLP-TLEKLVALMEASLTYP 256 (350)
T ss_dssp TTTTTTEECCSEEECTTSCCCCCCSSSCTTCCEE---ECTTCTTCCCCC-CTTTCCSCCEEECSCH
T ss_pred HHHhccCcccchhhcCCCCcCccChhhhccchHh---hhccCCCcCcCC-CchhCcChhhCcCCCC
Confidence 4455666666666666666665444444433333 322222222344 2455666666666544
No 98
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.82 E-value=3.9e-20 Score=195.12 Aligned_cols=180 Identities=26% Similarity=0.246 Sum_probs=122.0
Q ss_pred cEEeCCCCccCCCCCccccCCcCCcEEEccCccCcccCccccc-CCCCCCEEEccCCcCCccCcccccccchhhhccCCC
Q 003893 469 MILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLC-RLNQLQLLDLSNNNLHGHIPSCFDNTTLHERYNNGS 547 (788)
Q Consensus 469 ~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~ 547 (788)
+.++++++.++ .+|..+. +.++.|+|++|.+++..+..+. .+++|++|++++|++++..+..|..+.
T Consensus 21 ~~l~c~~~~l~-~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~--------- 88 (361)
T 2xot_A 21 NILSCSKQQLP-NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVP--------- 88 (361)
T ss_dssp TEEECCSSCCS-SCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCT---------
T ss_pred CEEEeCCCCcC-ccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCC---------
Confidence 46777777766 3444332 3467777777777766666665 677777777777777766665555544
Q ss_pred CCCCcccceeecCCcccCcccccccceEeeecCceecccCCccCCCceEECCCCcccccCcccccccccCCeEeCCCCCC
Q 003893 548 SLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNL 627 (788)
Q Consensus 548 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l 627 (788)
+|++|+|++|++++..+..|..+++|+.|+|++|+|
T Consensus 89 --------------------------------------------~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i 124 (361)
T 2xot_A 89 --------------------------------------------NLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHI 124 (361)
T ss_dssp --------------------------------------------TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred --------------------------------------------CCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcc
Confidence 677777777777766666777777777777777777
Q ss_pred CCCCCcccCCCCCCCeeeCCCcccCccCchhh---hcCCCCcEEecccCcCcccCCCCccccCC--CCcCCcCCCCCCCC
Q 003893 628 AGPIPSTFSNLRNIESLDLSYNKLSWKIPYQL---VELNTLAVFSVAYNNLSGKIPERAAQFAT--FNESSYEGNPFLCG 702 (788)
Q Consensus 628 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l---~~l~~L~~L~l~~N~l~~~~~~~~~~~~~--l~~~~~~~Np~~C~ 702 (788)
++..|..|..+++|++|+|++|+|+...+..| ..+++|+.|++++|++++..+..+..++. +..+++.+|||.|+
T Consensus 125 ~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~C~ 204 (361)
T 2xot_A 125 VVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLECD 204 (361)
T ss_dssp CEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEECC
T ss_pred cEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCccCC
Confidence 77667777777777777777777775444444 45777777777777777655555555554 25677778888887
Q ss_pred CC
Q 003893 703 PP 704 (788)
Q Consensus 703 ~~ 704 (788)
|.
T Consensus 205 C~ 206 (361)
T 2xot_A 205 CK 206 (361)
T ss_dssp HH
T ss_pred cC
Confidence 75
No 99
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.80 E-value=2.2e-19 Score=174.68 Aligned_cols=157 Identities=22% Similarity=0.249 Sum_probs=117.4
Q ss_pred ccEEeCCCCccCCCCCccccCCcCCcEEEccCccCcccCc-ccccCCCCCCEEEccCCcCCccCcccccccchhhhccCC
Q 003893 468 LMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVP-IQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHERYNNG 546 (788)
Q Consensus 468 L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~ 546 (788)
-+.+++++|.++. +|..+. +.+++|++++|.+++..+ ..|..+++|++|++++|.+++..+..|..+.
T Consensus 13 ~~~l~~s~n~l~~-iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~-------- 81 (220)
T 2v70_A 13 GTTVDCSNQKLNK-IPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGAS-------- 81 (220)
T ss_dssp TTEEECCSSCCSS-CCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCT--------
T ss_pred CCEeEeCCCCccc-CccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCC--------
Confidence 3578888888874 555443 456788888888886644 4577788888888888888777666665554
Q ss_pred CCCCCcccceeecCCcccCcccccccceEeeecCceecccCCccCCCceEECCCCcccccCcccccccccCCeEeCCCCC
Q 003893 547 SSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNN 626 (788)
Q Consensus 547 ~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~ 626 (788)
+|++|+|++|.+++..+..|..+++|++|+|++|+
T Consensus 82 ---------------------------------------------~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 116 (220)
T 2v70_A 82 ---------------------------------------------GVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNR 116 (220)
T ss_dssp ---------------------------------------------TCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSC
T ss_pred ---------------------------------------------CCCEEECCCCccCccCHhHhcCCcCCCEEECCCCc
Confidence 67788888888877777777777888888888888
Q ss_pred CCCCCCcccCCCCCCCeeeCCCcccCccCchhhhcCCCCcEEecccCcCcccCC
Q 003893 627 LAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSGKIP 680 (788)
Q Consensus 627 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~ 680 (788)
+++..|..|..+++|++|+|++|++++..|..|..+++|+.|++++|++++..+
T Consensus 117 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 170 (220)
T 2v70_A 117 ITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCY 170 (220)
T ss_dssp CCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGG
T ss_pred CCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCc
Confidence 877777777777888888888888877777777777777777777777776543
No 100
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.79 E-value=3.4e-19 Score=196.41 Aligned_cols=188 Identities=23% Similarity=0.271 Sum_probs=128.6
Q ss_pred CCcEEeccCCcCCCCCCCCCCCCcccEEEccCcccccccCcccccccccccEEeCCCCccCCCCCccccCCcCCcEEEcc
Q 003893 419 ILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILA 498 (788)
Q Consensus 419 ~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~ 498 (788)
+++.|++++|.+++..+.. +++|+.|++++|.+. .+| ..+++|++|++++|++++ +|. +.+ +|++|+++
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l--~~~L~~L~Ls~N~l~-~ip----~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls 128 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNL--PPQITVLEITQNALI-SLP----ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVD 128 (571)
T ss_dssp TCSEEECCSSCCSCCCSCC--CTTCSEEECCSSCCS-CCC----CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECC
T ss_pred CccEEEeCCCCCCccCHhH--cCCCCEEECcCCCCc-ccc----cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECC
Confidence 6666666666665532222 256666666666665 344 335778888888888875 555 544 78888888
Q ss_pred CccCcccCcccccCCCCCCEEEccCCcCCccCcccccccchhhhccCCCCCCCcccceeecCCcccCcccccccceEeee
Q 003893 499 HNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTT 578 (788)
Q Consensus 499 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~ 578 (788)
+|++++ +|. .+++|+.|++++|.++++.+ .
T Consensus 129 ~N~l~~-lp~---~l~~L~~L~Ls~N~l~~lp~----~------------------------------------------ 158 (571)
T 3cvr_A 129 NNQLTM-LPE---LPALLEYINADNNQLTMLPE----L------------------------------------------ 158 (571)
T ss_dssp SSCCSC-CCC---CCTTCCEEECCSSCCSCCCC----C------------------------------------------
T ss_pred CCcCCC-CCC---cCccccEEeCCCCccCcCCC----c------------------------------------------
Confidence 888875 444 57788888888888775322 1
Q ss_pred cCceecccCCccCCCceEECCCCcccccCcccccccccCCeEeCCCCCCCCCCCcccCCCCCC-------CeeeCCCccc
Q 003893 579 KSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNI-------ESLDLSYNKL 651 (788)
Q Consensus 579 ~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L-------~~L~Ls~N~l 651 (788)
+++|+.|++++|.+++ +|. |. ++|+.|+|++|+|+ .+|. |.. +| +.|+|++|+|
T Consensus 159 -----------l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l 219 (571)
T 3cvr_A 159 -----------PTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRI 219 (571)
T ss_dssp -----------CTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCC
T ss_pred -----------CCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCcc
Confidence 1268888888888875 555 55 78888888888888 4454 543 66 8888888888
Q ss_pred CccCchhhhcCCCCcEEecccCcCcccCCCCccccC
Q 003893 652 SWKIPYQLVELNTLAVFSVAYNNLSGKIPERAAQFA 687 (788)
Q Consensus 652 ~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~ 687 (788)
+ .+|..+..+++|+.|++++|++++.+|..+..+.
T Consensus 220 ~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~ 254 (571)
T 3cvr_A 220 T-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQT 254 (571)
T ss_dssp C-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHHH
T ss_pred e-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHhh
Confidence 8 4677777788888888888888887776665543
No 101
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.79 E-value=7.9e-19 Score=169.67 Aligned_cols=163 Identities=26% Similarity=0.270 Sum_probs=138.4
Q ss_pred cccccEEeCCCCccCCCCCccccCCcCCcEEEccCccCcccCcccccCCCCCCEEEccCCcCCccCcccccccchhhhcc
Q 003893 465 CLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHERYN 544 (788)
Q Consensus 465 ~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~ 544 (788)
.++|++|++++|++++..+..|..+++|++|++++|++++..+..|..+++|++|++++|.+++..+..+..+.
T Consensus 27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~------ 100 (208)
T 2o6s_A 27 PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLT------ 100 (208)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT------
T ss_pred CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCcc------
Confidence 35789999999999877777788899999999999999877666788899999999999999877766665554
Q ss_pred CCCCCCCcccceeecCCcccCcccccccceEeeecCceecccCCccCCCceEECCCCcccccCcccccccccCCeEeCCC
Q 003893 545 NGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSH 624 (788)
Q Consensus 545 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~ 624 (788)
+|++|++++|++++..+..|..+++|+.|++++
T Consensus 101 -----------------------------------------------~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~ 133 (208)
T 2o6s_A 101 -----------------------------------------------QLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQ 133 (208)
T ss_dssp -----------------------------------------------TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred -----------------------------------------------CCCEEEcCCCcCcccCHhHhccCCcCCEEECCC
Confidence 799999999999987777789999999999999
Q ss_pred CCCCCCCCcccCCCCCCCeeeCCCcccCccCchhhhcCCCCcEEecccCcCcccCCCCccccC
Q 003893 625 NNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSGKIPERAAQFA 687 (788)
Q Consensus 625 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~ 687 (788)
|++++..+..|..+++|++|++++|++.+ .+++|+.|+++.|+++|.+|..++.+.
T Consensus 134 N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~L~~~~n~~~g~ip~~~~~l~ 189 (208)
T 2o6s_A 134 NQLKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVRNSAGSVA 189 (208)
T ss_dssp SCCSCCCTTTTTTCTTCCEEECCSCCBCC-------CTTTTHHHHHHHHHCTTTBBCTTSSBC
T ss_pred CccceeCHHHhccCCCccEEEecCCCeec-------CCCCHHHHHHHHHhCCceeeccCcccc
Confidence 99998877788999999999999998874 346789999999999999998665443
No 102
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.79 E-value=1e-18 Score=171.17 Aligned_cols=155 Identities=22% Similarity=0.219 Sum_probs=102.1
Q ss_pred ccEEeCCCCccCCCCCccccCCcCCcEEEccCccCcccCcccccCCCCCCEEEccCCcCCccCcccccccchhhhccCCC
Q 003893 468 LMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHERYNNGS 547 (788)
Q Consensus 468 L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~ 547 (788)
.+.++.+++.++ .+|..+. ++|++|++++|.+++..+..|..+++|++|++++|++.+..+..|..+.
T Consensus 21 ~~~v~c~~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~--------- 88 (229)
T 3e6j_A 21 GTTVDCRSKRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLT--------- 88 (229)
T ss_dssp TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT---------
T ss_pred CCEeEccCCCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCC---------
Confidence 566788887776 4454332 6777888888887776677777777777777777777655555444433
Q ss_pred CCCCcccceeecCCcccCcccccccceEeeecCceecccCCccCCCceEECCCCcccccCcccccccccCCeEeCCCCCC
Q 003893 548 SLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNL 627 (788)
Q Consensus 548 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l 627 (788)
+|+.|+|++|++++..+..|..+++|+.|+|++|++
T Consensus 89 --------------------------------------------~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l 124 (229)
T 3e6j_A 89 --------------------------------------------QLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKL 124 (229)
T ss_dssp --------------------------------------------TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred --------------------------------------------CcCEEECCCCcCCccChhHhCcchhhCeEeccCCcc
Confidence 566666666666655555566666666666666666
Q ss_pred CCCCCcccCCCCCCCeeeCCCcccCccCchhhhcCCCCcEEecccCcCcccC
Q 003893 628 AGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSGKI 679 (788)
Q Consensus 628 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~ 679 (788)
+ .+|..+..+++|++|++++|++++..+..|..+++|+.|++++|++.+..
T Consensus 125 ~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c 175 (229)
T 3e6j_A 125 T-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCEC 175 (229)
T ss_dssp C-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTB
T ss_pred c-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCc
Confidence 6 44555666666666666666666555555666666666666666666543
No 103
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.78 E-value=2.1e-18 Score=167.68 Aligned_cols=158 Identities=22% Similarity=0.292 Sum_probs=130.5
Q ss_pred cEEEccCccCcccCcccccCCCCCCEEEccCCcCCccCcccccccchhhhccCCCCCCCcccceeecCCcccCccccccc
Q 003893 493 SYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILE 572 (788)
Q Consensus 493 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 572 (788)
+.++++++.++ .+|..+. +++++|++++|.+++..+..|..+.
T Consensus 14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~---------------------------------- 56 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYK---------------------------------- 56 (220)
T ss_dssp TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCT----------------------------------
T ss_pred CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCC----------------------------------
Confidence 57888888887 4555443 6788899999888877776666554
Q ss_pred ceEeeecCceecccCCccCCCceEECCCCcccccCcccccccccCCeEeCCCCCCCCCCCcccCCCCCCCeeeCCCcccC
Q 003893 573 SFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLS 652 (788)
Q Consensus 573 ~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 652 (788)
+|+.|+|++|.+++..|..|.++++|++|+|++|+|+.+.+..|.++++|++|+|++|+|+
T Consensus 57 -------------------~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~ 117 (220)
T 2v9t_B 57 -------------------KLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKIN 117 (220)
T ss_dssp -------------------TCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred -------------------CCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCC
Confidence 7888999999888888888888889999999999888777777888889999999999988
Q ss_pred ccCchhhhcCCCCcEEecccCcCcccCCCCccccCCCCcCCcCCCCCCCCCCCC
Q 003893 653 WKIPYQLVELNTLAVFSVAYNNLSGKIPERAAQFATFNESSYEGNPFLCGPPLP 706 (788)
Q Consensus 653 ~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~~~~~~Np~~C~~~~~ 706 (788)
+..|..|..+++|+.|++++|.+++..+..+..+++++.+++.+|||.|+|++.
T Consensus 118 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~l~ 171 (220)
T 2v9t_B 118 CLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICDCHLK 171 (220)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEECSGGGH
T ss_pred EeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCCCCccH
Confidence 888888888888999999999988888877888888888888899999888753
No 104
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.78 E-value=2e-18 Score=167.89 Aligned_cols=114 Identities=18% Similarity=0.276 Sum_probs=85.4
Q ss_pred CCceEECCCCcccccCcccccccccCCeEeCCCCCCCCCCCcccCCCCCCCeeeCCCcccCccCchhhhcCCCCcEEecc
Q 003893 592 LLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVA 671 (788)
Q Consensus 592 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~ 671 (788)
+|+.|++++|.+++..+..|.++++|++|+|++|++++..+..|..+++|++|+|++|+|++..|..|..+++|+.|+++
T Consensus 58 ~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~ 137 (220)
T 2v70_A 58 QLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLY 137 (220)
T ss_dssp TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECT
T ss_pred CCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECC
Confidence 67777777777777666677777777777777777777666677777777777777777777767777777777777777
Q ss_pred cCcCcccCCCCccccCCCCcCCcCCCCCCCCCCC
Q 003893 672 YNNLSGKIPERAAQFATFNESSYEGNPFLCGPPL 705 (788)
Q Consensus 672 ~N~l~~~~~~~~~~~~~l~~~~~~~Np~~C~~~~ 705 (788)
+|.+++..|..+..+++++.+++.+|||.|+|+.
T Consensus 138 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l 171 (220)
T 2v70_A 138 DNQITTVAPGAFDTLHSLSTLNLLANPFNCNCYL 171 (220)
T ss_dssp TSCCCCBCTTTTTTCTTCCEEECCSCCEECSGGG
T ss_pred CCcCCEECHHHhcCCCCCCEEEecCcCCcCCCch
Confidence 7777777777777777777777777777777764
No 105
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.77 E-value=3.1e-18 Score=165.52 Aligned_cols=162 Identities=27% Similarity=0.227 Sum_probs=131.1
Q ss_pred cccEEEccCcccccccCcccccccccccEEeCCCCccCCCCCccccCCcCCcEEEccCccCcccCcccccCCCCCCEEEc
Q 003893 442 CIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDL 521 (788)
Q Consensus 442 ~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 521 (788)
++++|++++|.+. .++...|..+++|++|++++|++++..+..|..+++|++|++++|.+++..+..+..+++|++|++
T Consensus 29 ~l~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 107 (208)
T 2o6s_A 29 QTTYLDLETNSLK-SLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELAL 107 (208)
T ss_dssp TCSEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCcEEEcCCCccC-cCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEc
Confidence 4444444444443 334446788889999999999998777777888999999999999998777777889999999999
Q ss_pred cCCcCCccCcccccccchhhhccCCCCCCCcccceeecCCcccCcccccccceEeeecCceecccCCccCCCceEECCCC
Q 003893 522 SNNNLHGHIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCN 601 (788)
Q Consensus 522 ~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n 601 (788)
++|.+++..+..+..+. +|++|++++|
T Consensus 108 ~~N~l~~~~~~~~~~l~-----------------------------------------------------~L~~L~l~~N 134 (208)
T 2o6s_A 108 NTNQLQSLPDGVFDKLT-----------------------------------------------------QLKDLRLYQN 134 (208)
T ss_dssp CSSCCCCCCTTTTTTCT-----------------------------------------------------TCCEEECCSS
T ss_pred CCCcCcccCHhHhccCC-----------------------------------------------------cCCEEECCCC
Confidence 99999877776665544 7999999999
Q ss_pred cccccCcccccccccCCeEeCCCCCCCCCCCcccCCCCCCCeeeCCCcccCccCchhhhcCCC
Q 003893 602 RLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNT 664 (788)
Q Consensus 602 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~ 664 (788)
.+++..+..+..+++|+.|++++|.+.+ .+++|++|+++.|++++.+|..++.++.
T Consensus 135 ~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~L~~~~n~~~g~ip~~~~~l~~ 190 (208)
T 2o6s_A 135 QLKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVRNSAGSVAP 190 (208)
T ss_dssp CCSCCCTTTTTTCTTCCEEECCSCCBCC-------CTTTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred ccceeCHHHhccCCCccEEEecCCCeec-------CCCCHHHHHHHHHhCCceeeccCccccC
Confidence 9998777778999999999999997764 3568999999999999999988877654
No 106
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.76 E-value=1.3e-17 Score=169.79 Aligned_cols=174 Identities=24% Similarity=0.331 Sum_probs=136.8
Q ss_pred hcccCCcEEeccCCcCCCCCCCCCCCCcccEEEccCcccccccCcccccccccccEEeCCCCccCCCCCccccCCcCCcE
Q 003893 415 CQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSY 494 (788)
Q Consensus 415 ~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~ 494 (788)
..+++|+.|++++|.+. .++ .+..+++|++|++++|++++..+ +..+++|++
T Consensus 43 ~~l~~L~~L~l~~~~i~------------------------~~~--~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~ 94 (291)
T 1h6t_A 43 NELNSIDQIIANNSDIK------------------------SVQ--GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGW 94 (291)
T ss_dssp HHHHTCCEEECTTSCCC------------------------CCT--TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCE
T ss_pred hhcCcccEEEccCCCcc------------------------cCh--hHhcCCCCCEEEccCCccCCCcc--cccCCCCCE
Confidence 45667777777777664 222 36678889999999998886544 888889999
Q ss_pred EEccCccCcccCcccccCCCCCCEEEccCCcCCccCcccccccchhhhccCCCCCCCcccceeecCCcccCcccccccce
Q 003893 495 LILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESF 574 (788)
Q Consensus 495 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 574 (788)
|++++|.+++ + ..+..+++|++|++++|++++. ..+..+.
T Consensus 95 L~l~~n~l~~-~-~~l~~l~~L~~L~L~~n~i~~~--~~l~~l~------------------------------------ 134 (291)
T 1h6t_A 95 LFLDENKVKD-L-SSLKDLKKLKSLSLEHNGISDI--NGLVHLP------------------------------------ 134 (291)
T ss_dssp EECCSSCCCC-G-GGGTTCTTCCEEECTTSCCCCC--GGGGGCT------------------------------------
T ss_pred EECCCCcCCC-C-hhhccCCCCCEEECCCCcCCCC--hhhcCCC------------------------------------
Confidence 9999998874 3 3488889999999999988754 1232222
Q ss_pred EeeecCceecccCCccCCCceEECCCCcccccCcccccccccCCeEeCCCCCCCCCCCcccCCCCCCCeeeCCCcccCcc
Q 003893 575 DFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWK 654 (788)
Q Consensus 575 ~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 654 (788)
+|+.|++++|.+++. ..+..+++|+.|++++|++++..+ +..+++|++|++++|+++.
T Consensus 135 -----------------~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~- 192 (291)
T 1h6t_A 135 -----------------QLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD- 192 (291)
T ss_dssp -----------------TCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB-
T ss_pred -----------------CCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCC-
Confidence 789999999999865 578899999999999999997655 8899999999999999985
Q ss_pred CchhhhcCCCCcEEecccCcCcccC
Q 003893 655 IPYQLVELNTLAVFSVAYNNLSGKI 679 (788)
Q Consensus 655 ~~~~l~~l~~L~~L~l~~N~l~~~~ 679 (788)
++ .+..+++|+.|++++|+++...
T Consensus 193 l~-~l~~l~~L~~L~l~~n~i~~~~ 216 (291)
T 1h6t_A 193 LR-ALAGLKNLDVLELFSQECLNKP 216 (291)
T ss_dssp CG-GGTTCTTCSEEEEEEEEEECCC
T ss_pred Ch-hhccCCCCCEEECcCCcccCCc
Confidence 44 4888999999999999988643
No 107
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.75 E-value=4.4e-18 Score=179.41 Aligned_cols=159 Identities=27% Similarity=0.254 Sum_probs=123.1
Q ss_pred cccEEeCCCCccCCCCCcccc-CCcCCcEEEccCccCcccCcccccCCCCCCEEEccCCcCCccCcccccccchhhhccC
Q 003893 467 TLMILDLSYNHLNGNIPDRVD-GLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHERYNN 545 (788)
Q Consensus 467 ~L~~L~l~~n~i~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~ 545 (788)
.++.|++++|++++..+..+. ++++|+.|++++|++++..+..|..+++|++|+|++|++++..+..|..+.
T Consensus 40 ~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~------- 112 (361)
T 2xot_A 40 YTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQ------- 112 (361)
T ss_dssp TCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCT-------
T ss_pred CCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCc-------
Confidence 477788888888776666676 788888888888888877777788888888888888888777666665554
Q ss_pred CCCCCCcccceeecCCcccCcccccccceEeeecCceecccCCccCCCceEECCCCcccccCcccccccccCCeEeCCCC
Q 003893 546 GSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHN 625 (788)
Q Consensus 546 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N 625 (788)
+|+.|+|++|.+++..+..|..+++|+.|+|++|
T Consensus 113 ----------------------------------------------~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N 146 (361)
T 2xot_A 113 ----------------------------------------------ALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQN 146 (361)
T ss_dssp ----------------------------------------------TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred ----------------------------------------------CCCEEECCCCcccEECHHHhCCcccCCEEECCCC
Confidence 7888888888888777888888888888888888
Q ss_pred CCCCCCCccc---CCCCCCCeeeCCCcccCccCchhhhcCCC--CcEEecccCcCccc
Q 003893 626 NLAGPIPSTF---SNLRNIESLDLSYNKLSWKIPYQLVELNT--LAVFSVAYNNLSGK 678 (788)
Q Consensus 626 ~l~~~~~~~~---~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~--L~~L~l~~N~l~~~ 678 (788)
+|++..+..| ..+++|+.|+|++|+|+...+..+..++. ++.|++++|++.+.
T Consensus 147 ~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~C~ 204 (361)
T 2xot_A 147 QISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLECD 204 (361)
T ss_dssp CCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEECC
T ss_pred cCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCccCC
Confidence 8886655555 56888888888888888766677777776 37788888888764
No 108
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.75 E-value=1.3e-17 Score=163.21 Aligned_cols=156 Identities=22% Similarity=0.293 Sum_probs=102.5
Q ss_pred CcEEEccCccCcccCcccccCCCCCCEEEccCCcCCccCcccccccchhhhccCCCCCCCcccceeecCCcccCcccccc
Q 003893 492 LSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQIL 571 (788)
Q Consensus 492 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 571 (788)
-+.++.+++.++ .+|..+. ++|++|++++|.+++..|..|..+.
T Consensus 21 ~~~v~c~~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~--------------------------------- 64 (229)
T 3e6j_A 21 GTTVDCRSKRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLI--------------------------------- 64 (229)
T ss_dssp TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCT---------------------------------
T ss_pred CCEeEccCCCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCcc---------------------------------
Confidence 455666666665 3443332 5677777777777666665555444
Q ss_pred cceEeeecCceecccCCccCCCceEECCCCcccccCcccccccccCCeEeCCCCCCCCCCCcccCCCCCCCeeeCCCccc
Q 003893 572 ESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKL 651 (788)
Q Consensus 572 ~~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l 651 (788)
+|++|+|++|++++..+..|..+++|+.|+|++|++++..+..|..+++|++|++++|+|
T Consensus 65 --------------------~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l 124 (229)
T 3e6j_A 65 --------------------NLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKL 124 (229)
T ss_dssp --------------------TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred --------------------CCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCcc
Confidence 667777777777655555666677777777777777766666666677777777777777
Q ss_pred CccCchhhhcCCCCcEEecccCcCcccCCCCccccCCCCcCCcCCCCCCCCCC
Q 003893 652 SWKIPYQLVELNTLAVFSVAYNNLSGKIPERAAQFATFNESSYEGNPFLCGPP 704 (788)
Q Consensus 652 ~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~~~~~~Np~~C~~~ 704 (788)
+ .+|..+..+++|+.|++++|++++..+..+..+++++.+++.+||+.|+|+
T Consensus 125 ~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 176 (229)
T 3e6j_A 125 T-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECR 176 (229)
T ss_dssp C-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBG
T ss_pred c-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCcc
Confidence 6 556666667777777777777776665556666667777777777777664
No 109
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.73 E-value=1.6e-17 Score=185.50 Aligned_cols=81 Identities=28% Similarity=0.386 Sum_probs=43.0
Q ss_pred CCceEECCCCcccccCcccccccccCCeEeCCCCCCCCCCCcccCCCCCCCeeeCCCcccCccCchhhhcCCCCcEEecc
Q 003893 592 LLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVA 671 (788)
Q Consensus 592 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~ 671 (788)
+|+.|+|++|.+++. ..+..+++|+.|+|++|++++..| +..+++|+.|+|++|+|++. ..+..+++|+.|+++
T Consensus 132 ~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~ 205 (605)
T 1m9s_A 132 QLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELF 205 (605)
T ss_dssp TCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECC
T ss_pred ccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEcc
Confidence 455555555555533 345555555555555555554433 55555555555555555532 235555555555555
Q ss_pred cCcCccc
Q 003893 672 YNNLSGK 678 (788)
Q Consensus 672 ~N~l~~~ 678 (788)
+|++++.
T Consensus 206 ~N~l~~~ 212 (605)
T 1m9s_A 206 SQECLNK 212 (605)
T ss_dssp SEEEECC
T ss_pred CCcCcCC
Confidence 5555543
No 110
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.72 E-value=4.2e-17 Score=179.74 Aligned_cols=189 Identities=26% Similarity=0.332 Sum_probs=135.0
Q ss_pred CCcEEEcccCcCCCCCCccccCCCCccEEEccCCeeccCchhhhhcccCCcEEeccCCcCCCCCCCCCCCCcccEEEccC
Q 003893 371 SLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSK 450 (788)
Q Consensus 371 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~ 450 (788)
+++.|++++|.+++ +|..+ .++|+.|++++|.++ .+| ..+++|+.|++++|.+++
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~------------------ 114 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST------------------ 114 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC------------------
T ss_pred CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC------------------
Confidence 78888888888875 55544 367888888888777 344 346777777777777663
Q ss_pred cccccccCcccccccccccEEeCCCCccCCCCCccccCCcCCcEEEccCccCcccCcccccCCCCCCEEEccCCcCCccC
Q 003893 451 NMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHI 530 (788)
Q Consensus 451 n~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 530 (788)
+|. +.+ +|++|++++|.+++ +|. .+++|+.|++++|.+++ +|. .+++|++|++++|+++++
T Consensus 115 ------ip~--l~~--~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~l- 175 (571)
T 3cvr_A 115 ------LPE--LPA--SLKHLDVDNNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTFL- 175 (571)
T ss_dssp ------CCC--CCT--TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSCC-
T ss_pred ------cch--hhc--CCCEEECCCCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCCc-
Confidence 332 222 67788888888775 444 56778888888888875 443 467888888888887763
Q ss_pred cccccccchhhhccCCCCCCCcccceeecCCcccCcccccccceEeeecCceecccCCccCCCceEECCCCcccccCccc
Q 003893 531 PSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQ 610 (788)
Q Consensus 531 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~ 610 (788)
|. +. ++|+.|+|++|.++ .+|.
T Consensus 176 p~-l~-------------------------------------------------------~~L~~L~Ls~N~L~-~lp~- 197 (571)
T 3cvr_A 176 PE-LP-------------------------------------------------------ESLEALDVSTNLLE-SLPA- 197 (571)
T ss_dssp CC-CC-------------------------------------------------------TTCCEEECCSSCCS-SCCC-
T ss_pred ch-hh-------------------------------------------------------CCCCEEECcCCCCC-chhh-
Confidence 32 22 26888888888888 4554
Q ss_pred ccccccC-------CeEeCCCCCCCCCCCcccCCCCCCCeeeCCCcccCccCchhhhcCCC
Q 003893 611 IGNLTKI-------QTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNT 664 (788)
Q Consensus 611 ~~~l~~L-------~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~ 664 (788)
+.. +| +.|+|++|+|+. +|..+..+++|+.|+|++|++++.+|..+..+..
T Consensus 198 ~~~--~L~~~~~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~ 255 (571)
T 3cvr_A 198 VPV--RNHHSEETEIFFRCRENRITH-IPENILSLDPTCTIILEDNPLSSRIRESLSQQTA 255 (571)
T ss_dssp CC----------CCEEEECCSSCCCC-CCGGGGGSCTTEEEECCSSSCCHHHHHHHHHHHH
T ss_pred HHH--hhhcccccceEEecCCCccee-cCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHhhc
Confidence 544 66 999999999994 6777777999999999999999888888776543
No 111
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.72 E-value=2.6e-17 Score=167.50 Aligned_cols=175 Identities=20% Similarity=0.253 Sum_probs=149.3
Q ss_pred cccccccccEEeCCCCccCCCCCccccCCcCCcEEEccCccCcccCcccccCCCCCCEEEccCCcCCccCcccccccchh
Q 003893 461 TFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLH 540 (788)
Q Consensus 461 ~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~ 540 (788)
.+..+++|++|++++|.+... + .+..+++|++|++++|++++..+ +..+++|++|++++|.+++.. .+..+.
T Consensus 41 ~~~~l~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~--~l~~l~-- 112 (291)
T 1h6t_A 41 TQNELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDLS--SLKDLK-- 112 (291)
T ss_dssp CHHHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCGG--GGTTCT--
T ss_pred chhhcCcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCCCh--hhccCC--
Confidence 355788999999999999854 3 48889999999999999986544 899999999999999997632 133332
Q ss_pred hhccCCCCCCCcccceeecCCcccCcccccccceEeeecCceecccCCccCCCceEECCCCcccccCcccccccccCCeE
Q 003893 541 ERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTL 620 (788)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 620 (788)
+|++|++++|++++. ..+..+++|+.|
T Consensus 113 ---------------------------------------------------~L~~L~L~~n~i~~~--~~l~~l~~L~~L 139 (291)
T 1h6t_A 113 ---------------------------------------------------KLKSLSLEHNGISDI--NGLVHLPQLESL 139 (291)
T ss_dssp ---------------------------------------------------TCCEEECTTSCCCCC--GGGGGCTTCCEE
T ss_pred ---------------------------------------------------CCCEEECCCCcCCCC--hhhcCCCCCCEE
Confidence 899999999999864 468899999999
Q ss_pred eCCCCCCCCCCCcccCCCCCCCeeeCCCcccCccCchhhhcCCCCcEEecccCcCcccCCCCccccCCCCcCCcCCCCCC
Q 003893 621 NLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSGKIPERAAQFATFNESSYEGNPFL 700 (788)
Q Consensus 621 ~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~~~~~~Np~~ 700 (788)
++++|++++. ..+..+++|++|++++|++++..+ +..+++|+.|++++|.+++. +. +..+++++.+++.+|+..
T Consensus 140 ~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~l-~~-l~~l~~L~~L~l~~n~i~ 213 (291)
T 1h6t_A 140 YLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL-RA-LAGLKNLDVLELFSQECL 213 (291)
T ss_dssp ECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC-GG-GTTCTTCSEEEEEEEEEE
T ss_pred EccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCCC-hh-hccCCCCCEEECcCCccc
Confidence 9999999975 678999999999999999997555 88999999999999999975 43 688899999999999876
Q ss_pred CC
Q 003893 701 CG 702 (788)
Q Consensus 701 C~ 702 (788)
+.
T Consensus 214 ~~ 215 (291)
T 1h6t_A 214 NK 215 (291)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 112
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.72 E-value=2.8e-17 Score=155.86 Aligned_cols=117 Identities=23% Similarity=0.389 Sum_probs=108.9
Q ss_pred ccCCCceEECCCCcccccCcccccccccCCeEeCCCCCCCCCCCcccCCCCCCCeeeCCCcccCccCchhhhcCCCCcEE
Q 003893 589 VPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVF 668 (788)
Q Consensus 589 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L 668 (788)
+|+++++|++++|.++ .+|..|..+++|+.|+|++|+|++..+..|.++++|++|+|++|+|++..|..|..+++|+.|
T Consensus 29 ~~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L 107 (193)
T 2wfh_A 29 IPRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLL 107 (193)
T ss_dssp CCTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEE
T ss_pred CCCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEE
Confidence 3458999999999998 667899999999999999999999888999999999999999999999888899999999999
Q ss_pred ecccCcCcccCCCCccccCCCCcCCcCCCCCCCCCCCC
Q 003893 669 SVAYNNLSGKIPERAAQFATFNESSYEGNPFLCGPPLP 706 (788)
Q Consensus 669 ~l~~N~l~~~~~~~~~~~~~l~~~~~~~Np~~C~~~~~ 706 (788)
++++|.+++..+..+..+++++.+++.+|||.|+|+..
T Consensus 108 ~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~c~l~ 145 (193)
T 2wfh_A 108 SLHGNDISVVPEGAFNDLSALSHLAIGANPLYCDCNMQ 145 (193)
T ss_dssp ECCSSCCCBCCTTTTTTCTTCCEEECCSSCEECSGGGH
T ss_pred ECCCCCCCeeChhhhhcCccccEEEeCCCCeecCCcCH
Confidence 99999999888888899999999999999999999853
No 113
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.70 E-value=5.2e-17 Score=155.13 Aligned_cols=155 Identities=15% Similarity=0.226 Sum_probs=123.1
Q ss_pred ccccccccEEeCCCCccCCCCCccccCCcCCcEEEccCccCcccCcccccCCCCCCEEEccCCcCCccCcccccccchhh
Q 003893 462 FFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHE 541 (788)
Q Consensus 462 ~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~ 541 (788)
...+++|++|++++|.++ .++ .+..+++|++|++++|.+. .+..+..+++|++|++++|++++..+..+..++
T Consensus 40 ~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~--- 112 (197)
T 4ezg_A 40 EAQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLT--- 112 (197)
T ss_dssp HHHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCT---
T ss_pred hhhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCC---
Confidence 356778899999999888 444 5788889999999999765 334788889999999999988876665555544
Q ss_pred hccCCCCCCCcccceeecCCcccCcccccccceEeeecCceecccCCccCCCceEECCCCcccccCcccccccccCCeEe
Q 003893 542 RYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLN 621 (788)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 621 (788)
+|++|++++|.+++..+..+..+++|++|+
T Consensus 113 --------------------------------------------------~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~ 142 (197)
T 4ezg_A 113 --------------------------------------------------SLTLLDISHSAHDDSILTKINTLPKVNSID 142 (197)
T ss_dssp --------------------------------------------------TCCEEECCSSBCBGGGHHHHTTCSSCCEEE
T ss_pred --------------------------------------------------CCCEEEecCCccCcHhHHHHhhCCCCCEEE
Confidence 789999999999887788889999999999
Q ss_pred CCCCC-CCCCCCcccCCCCCCCeeeCCCcccCccCchhhhcCCCCcEEecccCcCcc
Q 003893 622 LSHNN-LAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSG 677 (788)
Q Consensus 622 Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~ 677 (788)
+++|+ ++. +| .+..+++|++|++++|++++ ++ .+..+++|+.|++++|++.+
T Consensus 143 L~~n~~i~~-~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 143 LSYNGAITD-IM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp CCSCTBCCC-CG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC----
T ss_pred ccCCCCccc-cH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCcccCC
Confidence 99998 664 44 68889999999999999985 33 67888999999999998764
No 114
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.70 E-value=3.7e-17 Score=163.61 Aligned_cols=154 Identities=19% Similarity=0.201 Sum_probs=128.0
Q ss_pred cccccccccEEeCCCCccCCCCCccccCCcCCcEEEccCccCcccCcccccCCCCCCEEEccCCcCCccCcccccccchh
Q 003893 461 TFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLH 540 (788)
Q Consensus 461 ~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~ 540 (788)
.+..+++|++|++++|.++. ++ .+..+++|++|++++|++++..+ +..+++|++|++++|++++..+...
T Consensus 36 ~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~N~l~~l~~~~~------ 105 (263)
T 1xeu_A 36 SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNRLKNLNGIPS------ 105 (263)
T ss_dssp CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSSCCSCCTTCCC------
T ss_pred chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCCCccCCcCcccc------
Confidence 46778899999999999884 44 68889999999999999985544 8899999999999999876432111
Q ss_pred hhccCCCCCCCcccceeecCCcccCcccccccceEeeecCceecccCCccCCCceEECCCCcccccCcccccccccCCeE
Q 003893 541 ERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTL 620 (788)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 620 (788)
++|+.|++++|++++. ..+..+++|+.|
T Consensus 106 --------------------------------------------------~~L~~L~L~~N~l~~~--~~l~~l~~L~~L 133 (263)
T 1xeu_A 106 --------------------------------------------------ACLSRLFLDNNELRDT--DSLIHLKNLEIL 133 (263)
T ss_dssp --------------------------------------------------SSCCEEECCSSCCSBS--GGGTTCTTCCEE
T ss_pred --------------------------------------------------CcccEEEccCCccCCC--hhhcCcccccEE
Confidence 2799999999999864 358899999999
Q ss_pred eCCCCCCCCCCCcccCCCCCCCeeeCCCcccCccCchhhhcCCCCcEEecccCcCcccCC
Q 003893 621 NLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSGKIP 680 (788)
Q Consensus 621 ~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~ 680 (788)
++++|++++. + .+..+++|++|++++|++++. ..+..+++|+.|++++|++++...
T Consensus 134 ~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~~~ 189 (263)
T 1xeu_A 134 SIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNEPV 189 (263)
T ss_dssp ECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECCCE
T ss_pred ECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCCcc
Confidence 9999999965 3 688899999999999999865 678889999999999999987633
No 115
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.70 E-value=5.9e-17 Score=180.82 Aligned_cols=151 Identities=25% Similarity=0.334 Sum_probs=85.9
Q ss_pred cCCCccCceeccCccCcccCCccCCCCCCCcEEEcccCcCCCCCCccccCCCCccEEEccCCeeccCchhhhhcccCCcE
Q 003893 343 FNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQI 422 (788)
Q Consensus 343 ~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~ 422 (788)
..+++|+.|++++|.+... + .+..+++|+.|++++|.+.+..+ +..+++|+.|++++|.+.+. ..+..+++|+.
T Consensus 40 ~~L~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~ 113 (605)
T 1m9s_A 40 NELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKDL--SSLKDLKKLKS 113 (605)
T ss_dssp HHHTTCCCCBCTTCCCCCC-T-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCC--TTSTTCTTCCE
T ss_pred hcCCCCCEEECcCCCCCCC-h-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCCC--hhhccCCCCCE
Confidence 3455666666666665532 2 35555566666666655553322 44455555555555554431 13444444444
Q ss_pred EeccCCcCCCCCCCCCCCCcccEEEccCcccccccCcccccccccccEEeCCCCccCCCCCccccCCcCCcEEEccCccC
Q 003893 423 LDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNL 502 (788)
Q Consensus 423 L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l 502 (788)
|++++|.+. + ++ .+..+++|+.|+|++|.+++. ..+..+++|+.|+|++|.+
T Consensus 114 L~Ls~N~l~-----------------------~-l~--~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l 165 (605)
T 1m9s_A 114 LSLEHNGIS-----------------------D-IN--GLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQI 165 (605)
T ss_dssp EECTTSCCC-----------------------C-CG--GGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCC
T ss_pred EEecCCCCC-----------------------C-Cc--cccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcC
Confidence 444444433 1 11 356667777777777777644 4566677777777777777
Q ss_pred cccCcccccCCCCCCEEEccCCcCCcc
Q 003893 503 EGEVPIQLCRLNQLQLLDLSNNNLHGH 529 (788)
Q Consensus 503 ~~~~~~~~~~l~~L~~L~L~~n~l~~~ 529 (788)
.+..| +..+++|+.|+|++|++++.
T Consensus 166 ~~~~~--l~~l~~L~~L~Ls~N~i~~l 190 (605)
T 1m9s_A 166 SDIVP--LAGLTKLQNLYLSKNHISDL 190 (605)
T ss_dssp CCCGG--GTTCTTCCEEECCSSCCCBC
T ss_pred CCchh--hccCCCCCEEECcCCCCCCC
Confidence 65444 66677777777777766643
No 116
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.69 E-value=1.1e-16 Score=152.02 Aligned_cols=131 Identities=26% Similarity=0.387 Sum_probs=84.0
Q ss_pred cEEeCCCCccCCCCCccccCCcCCcEEEccCccCcccCcc-cccCCCCCCEEEccCCcCCccCcccccccchhhhccCCC
Q 003893 469 MILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPI-QLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHERYNNGS 547 (788)
Q Consensus 469 ~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~ 547 (788)
+++++++|+++ .+|..+. .++++|++++|.+++..+. .+..+++|++|++++|.+++..|..|..+.
T Consensus 11 ~~l~~s~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~--------- 78 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGAS--------- 78 (192)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCT---------
T ss_pred CEEEcCCCCcC-cCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcc---------
Confidence 56777777775 4454333 2677777777777655443 366677777777777777666565555444
Q ss_pred CCCCcccceeecCCcccCcccccccceEeeecCceecccCCccCCCceEECCCCcccccCcccccccccCCeEeCCCCCC
Q 003893 548 SLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNL 627 (788)
Q Consensus 548 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l 627 (788)
+|++|+|++|++++..+..|.++++|++|+|++|++
T Consensus 79 --------------------------------------------~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l 114 (192)
T 1w8a_A 79 --------------------------------------------HIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQI 114 (192)
T ss_dssp --------------------------------------------TCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCC
T ss_pred --------------------------------------------cCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcC
Confidence 566666666666666666666666666666666666
Q ss_pred CCCCCcccCCCCCCCeeeCCCcccCccC
Q 003893 628 AGPIPSTFSNLRNIESLDLSYNKLSWKI 655 (788)
Q Consensus 628 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 655 (788)
++..|..|..+++|++|++++|++.+..
T Consensus 115 ~~~~~~~~~~l~~L~~L~L~~N~l~c~c 142 (192)
T 1w8a_A 115 SCVMPGSFEHLNSLTSLNLASNPFNCNC 142 (192)
T ss_dssp CEECTTSSTTCTTCCEEECTTCCBCCSG
T ss_pred CeeCHHHhhcCCCCCEEEeCCCCccCcC
Confidence 6666666666666666666666666443
No 117
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.69 E-value=8.8e-17 Score=152.61 Aligned_cols=116 Identities=25% Similarity=0.345 Sum_probs=108.6
Q ss_pred cCCCceEECCCCcccccCcc-cccccccCCeEeCCCCCCCCCCCcccCCCCCCCeeeCCCcccCccCchhhhcCCCCcEE
Q 003893 590 PSLLSGLDLSCNRLIGHIPP-QIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVF 668 (788)
Q Consensus 590 ~~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L 668 (788)
|..+++|++++|.+++..+. .|..+++|++|+|++|++++..|..|.++++|++|+|++|+|++..+..|..+++|++|
T Consensus 28 ~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 107 (192)
T 1w8a_A 28 PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTL 107 (192)
T ss_dssp CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEE
T ss_pred CCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEE
Confidence 34799999999999977765 58999999999999999999989999999999999999999999988889999999999
Q ss_pred ecccCcCcccCCCCccccCCCCcCCcCCCCCCCCCCC
Q 003893 669 SVAYNNLSGKIPERAAQFATFNESSYEGNPFLCGPPL 705 (788)
Q Consensus 669 ~l~~N~l~~~~~~~~~~~~~l~~~~~~~Np~~C~~~~ 705 (788)
++++|++++..|..+..+++++.+++.+|||.|+|+.
T Consensus 108 ~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l 144 (192)
T 1w8a_A 108 NLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHL 144 (192)
T ss_dssp ECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGG
T ss_pred ECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCcc
Confidence 9999999999999999999999999999999999875
No 118
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.68 E-value=2.1e-16 Score=150.84 Aligned_cols=133 Identities=18% Similarity=0.254 Sum_probs=96.2
Q ss_pred ccccccccEEeCCCCccCCCCCccccCCcCCcEEEccCccCcccCcccccCCCCCCEEEccCCcCCccCcccccccchhh
Q 003893 462 FFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHE 541 (788)
Q Consensus 462 ~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~ 541 (788)
+..+++|++|++++|.+. .+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..++
T Consensus 62 l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~--- 136 (197)
T 4ezg_A 62 IEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLP--- 136 (197)
T ss_dssp GGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCS---
T ss_pred HhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCC---
Confidence 556667777777777654 223567777788888888777766677777788888888888877766565555443
Q ss_pred hccCCCCCCCcccceeecCCcccCcccccccceEeeecCceecccCCccCCCceEECCCCc-ccccCcccccccccCCeE
Q 003893 542 RYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNR-LIGHIPPQIGNLTKIQTL 620 (788)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L 620 (788)
+|++|++++|. ++ .+| .+..+++|+.|
T Consensus 137 --------------------------------------------------~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L 164 (197)
T 4ezg_A 137 --------------------------------------------------KVNSIDLSYNGAIT-DIM-PLKTLPELKSL 164 (197)
T ss_dssp --------------------------------------------------SCCEEECCSCTBCC-CCG-GGGGCSSCCEE
T ss_pred --------------------------------------------------CCCEEEccCCCCcc-ccH-hhcCCCCCCEE
Confidence 78888888887 54 444 68888999999
Q ss_pred eCCCCCCCCCCCcccCCCCCCCeeeCCCcccCc
Q 003893 621 NLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSW 653 (788)
Q Consensus 621 ~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 653 (788)
++++|++++. + .+..+++|++|++++|++.+
T Consensus 165 ~l~~n~i~~~-~-~l~~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 165 NIQFDGVHDY-R-GIEDFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp ECTTBCCCCC-T-TGGGCSSCCEEEECBC----
T ss_pred ECCCCCCcCh-H-HhccCCCCCEEEeeCcccCC
Confidence 9999999864 3 68888999999999998863
No 119
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.67 E-value=5e-17 Score=169.09 Aligned_cols=76 Identities=14% Similarity=0.031 Sum_probs=47.6
Q ss_pred CCceEECCCCcccccCcccccccccCC-eEeCCCCCCCCCCCcccCCCCCCCeeeCCCcccCccCchhhhcCCCCcEEe
Q 003893 592 LLSGLDLSCNRLIGHIPPQIGNLTKIQ-TLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFS 669 (788)
Q Consensus 592 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~-~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~ 669 (788)
+|+.+++.+| ++.+.+.+|.++++|+ .+++.+ .++.+.+.+|.++++|+.+++++|.++...+.+|..+++|+.+.
T Consensus 251 ~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 251 YLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp TCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred CCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhc
Confidence 5556666555 5555556666666666 666666 55555556666666666666666666665566666666666654
No 120
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.67 E-value=4.7e-17 Score=169.29 Aligned_cols=100 Identities=15% Similarity=0.035 Sum_probs=82.7
Q ss_pred CCceEECCCCcccccCcccccccccCCeEeCCCCCCCCCCCcccCCCCCCC-eeeCCCcccCccCchhhhcCCCCcEEec
Q 003893 592 LLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIE-SLDLSYNKLSWKIPYQLVELNTLAVFSV 670 (788)
Q Consensus 592 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~-~L~Ls~N~l~~~~~~~l~~l~~L~~L~l 670 (788)
+|+.+++++|+++.+.+.+|.++++|+.++|++| ++.+.+.+|.++++|+ .+++.+ .++...+.+|..+++|+.+++
T Consensus 227 ~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l 304 (329)
T 3sb4_A 227 NLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLA 304 (329)
T ss_dssp TCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEE
T ss_pred CCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEe
Confidence 6888888888888777788888888999999887 7777778888888898 888888 777777788888888999998
Q ss_pred ccCcCcccCCCCccccCCCCcCC
Q 003893 671 AYNNLSGKIPERAAQFATFNESS 693 (788)
Q Consensus 671 ~~N~l~~~~~~~~~~~~~l~~~~ 693 (788)
++|+++...+..|..+.+++.++
T Consensus 305 ~~n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 305 TGDKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp CSSCCCEECTTTTCTTCCCCEEE
T ss_pred CCCccCccchhhhcCCcchhhhc
Confidence 88888888777777777776654
No 121
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.66 E-value=8.7e-17 Score=160.90 Aligned_cols=172 Identities=21% Similarity=0.256 Sum_probs=145.3
Q ss_pred ccccccEEeCCCCccCCCCCccccCCcCCcEEEccCccCcccCcccccCCCCCCEEEccCCcCCccCcccccccchhhhc
Q 003893 464 NCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHERY 543 (788)
Q Consensus 464 ~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~ 543 (788)
.+.++..++++++.+++.. .+..+++|+.|++++|.++. ++ .+..+++|++|++++|++++..+ +..++
T Consensus 17 ~l~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~----- 85 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP--LKDLT----- 85 (263)
T ss_dssp HHHHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCS-----
T ss_pred HHHHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh--hccCC-----
Confidence 4556778899999988543 57889999999999999984 44 68899999999999999987655 54443
Q ss_pred cCCCCCCCcccceeecCCcccCcccccccceEeeecCceecccCCccCCCceEECCCCcccccCcccccccccCCeEeCC
Q 003893 544 NNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLS 623 (788)
Q Consensus 544 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls 623 (788)
+|+.|++++|++++..+ +.. ++|+.|+++
T Consensus 86 ------------------------------------------------~L~~L~L~~N~l~~l~~--~~~-~~L~~L~L~ 114 (263)
T 1xeu_A 86 ------------------------------------------------KLEELSVNRNRLKNLNG--IPS-ACLSRLFLD 114 (263)
T ss_dssp ------------------------------------------------SCCEEECCSSCCSCCTT--CCC-SSCCEEECC
T ss_pred ------------------------------------------------CCCEEECCCCccCCcCc--ccc-CcccEEEcc
Confidence 89999999999986433 333 899999999
Q ss_pred CCCCCCCCCcccCCCCCCCeeeCCCcccCccCchhhhcCCCCcEEecccCcCcccCCCCccccCCCCcCCcCCCCCCCCC
Q 003893 624 HNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSGKIPERAAQFATFNESSYEGNPFLCGP 703 (788)
Q Consensus 624 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~~~~~~Np~~C~~ 703 (788)
+|++++. ..+..+++|++|++++|++++. + .+..+++|+.|++++|++++. ..+..++.++.+++.+|++.|.+
T Consensus 115 ~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~~ 188 (263)
T 1xeu_A 115 NNELRDT--DSLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNEP 188 (263)
T ss_dssp SSCCSBS--GGGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECCC
T ss_pred CCccCCC--hhhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCCc
Confidence 9999964 3599999999999999999964 4 688999999999999999987 55788999999999999988764
No 122
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.65 E-value=6.3e-15 Score=156.20 Aligned_cols=266 Identities=12% Similarity=0.066 Sum_probs=187.2
Q ss_pred cCCCCCEEEccCCcccCcCccCccCCCCcCEEEccCCcCcccCChhhhhcCCCCcEEEeeCCcCCCCCCccccCCCCCCE
Q 003893 222 NNTKLRQLSLVNDSLVGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQF 301 (788)
Q Consensus 222 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 301 (788)
.+..++.+.+.+ .++.+....|..+ +|+.+.+..+ ++ .++...|.. .+|+.+.+.. .+..+...+|.++++|+.
T Consensus 111 ~~~~l~~i~ip~-~i~~I~~~aF~~~-~L~~i~l~~~-i~-~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~~ 184 (401)
T 4fdw_A 111 ILKGYNEIILPN-SVKSIPKDAFRNS-QIAKVVLNEG-LK-SIGDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYNLKK 184 (401)
T ss_dssp ECSSCSEEECCT-TCCEECTTTTTTC-CCSEEECCTT-CC-EECTTTTTT-CCCCEEECCT-TCCEECSSTTTTCTTCCE
T ss_pred ecCCccEEEECC-ccCEehHhhcccC-CccEEEeCCC-cc-EECHHhcCC-CCceEEEeCC-CccEehHHHhhCcccCCe
Confidence 345666666644 3444555666664 6888887655 54 555555554 3688888875 566566677888888888
Q ss_pred EEccCCcCCCccchHHhhCCCCCcEEEccccccCccccccccCCCccCceeccCccCcccCCccCCCCCCCcEEEcccCc
Q 003893 302 LDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNS 381 (788)
Q Consensus 302 L~L~~n~i~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~ 381 (788)
+++.+|.++ .++...|. +.+|+.+.+..+ ++.+...+|.++++|+.+++..+ +..+...+|.+ .+|+.+.+. +.
T Consensus 185 l~l~~n~l~-~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp-~~ 258 (401)
T 4fdw_A 185 ADLSKTKIT-KLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLP-NG 258 (401)
T ss_dssp EECTTSCCS-EECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEE-TT
T ss_pred eecCCCcce-EechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeC-CC
Confidence 888888888 78887776 678888888744 77777778888888888888764 45466667776 678888884 44
Q ss_pred CCCCCCccccCCCCccEEEccCCeec-----cCchhhhhcccCCcEEeccCCcCCCCCCCCCCCCcccEEEccCcccccc
Q 003893 382 LSGKIPRWLGNLTVLRHIIMPKNHIE-----GPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQ 456 (788)
Q Consensus 382 l~~~~~~~l~~l~~L~~L~l~~n~~~-----~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~ 456 (788)
+......+|.++++|+.+.+.++.+. .+...+|.+|++|+.+++.++ +. .
T Consensus 259 i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~~-i~------------------------~ 313 (401)
T 4fdw_A 259 VTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPES-IR------------------------I 313 (401)
T ss_dssp CCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCTT-CC------------------------E
T ss_pred ccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCCc-eE------------------------E
Confidence 55556677788888888888776654 345567777777777777632 33 4
Q ss_pred cCcccccccccccEEeCCCCccCCCCCccccCCcCCcEEEccCccCcccCcccccCCC-CCCEEEccCCcC
Q 003893 457 LKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLN-QLQLLDLSNNNL 526 (788)
Q Consensus 457 ~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~L~~n~l 526 (788)
+...+|.+|++|+.+++..+ ++.+...+|.++ +|+.+++.+|.+....+..|.+++ +++.|.+..+.+
T Consensus 314 I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~ 382 (401)
T 4fdw_A 314 LGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESV 382 (401)
T ss_dssp ECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGH
T ss_pred EhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHH
Confidence 55557888888888888654 555566778888 888888888877766666777774 677887766654
No 123
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.64 E-value=4.4e-15 Score=157.38 Aligned_cols=265 Identities=13% Similarity=0.138 Sum_probs=158.5
Q ss_pred CCCCcEEEccccccCccccccccCCCccCceeccCccCcccCCccCCCCCCCcEEEcccCcCCCCCCccccCCCCccEEE
Q 003893 321 CVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHII 400 (788)
Q Consensus 321 l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 400 (788)
+..++.+.+.+ .++.+...+|.++ +|+.+.+..+ +..+...+|.++ +|+.+.+.. .+....+.+|.+|++|+.++
T Consensus 112 ~~~l~~i~ip~-~i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~ 186 (401)
T 4fdw_A 112 LKGYNEIILPN-SVKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKAD 186 (401)
T ss_dssp CSSCSEEECCT-TCCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEE
T ss_pred cCCccEEEECC-ccCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeee
Confidence 34555555543 2444444455443 4555555544 433444445443 455555543 33333334444455555555
Q ss_pred ccCCeeccCchhhhhcccCCcEEeccCCcCCCCCCCCCCCCcccEEEccCcccccccCcccccccccccEEeCCCCccCC
Q 003893 401 MPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNG 480 (788)
Q Consensus 401 l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~i~~ 480 (788)
+++|.+. ......+....|+.+.+..+ + ..++..+|.+|++|+.+++..+ ++.
T Consensus 187 l~~n~l~------------------------~I~~~aF~~~~L~~l~lp~~-l-~~I~~~aF~~~~~L~~l~l~~~-l~~ 239 (401)
T 4fdw_A 187 LSKTKIT------------------------KLPASTFVYAGIEEVLLPVT-L-KEIGSQAFLKTSQLKTIEIPEN-VST 239 (401)
T ss_dssp CTTSCCS------------------------EECTTTTTTCCCSEEECCTT-C-CEECTTTTTTCTTCCCEECCTT-CCE
T ss_pred cCCCcce------------------------EechhhEeecccCEEEeCCc-h-heehhhHhhCCCCCCEEecCCC-ccC
Confidence 5444444 44444444444444444432 2 2456668888888888888864 554
Q ss_pred CCCccccCCcCCcEEEccCccCcccCcccccCCCCCCEEEccCCcCC-----ccCcccccccchhhhccCCCCCCCcccc
Q 003893 481 NIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLH-----GHIPSCFDNTTLHERYNNGSSLQPFETS 555 (788)
Q Consensus 481 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 555 (788)
+...+|.+ .+|+.+.+. +.++.....+|.++++|+.+++.+|.+. .+.+.+|..+.
T Consensus 240 I~~~aF~~-~~L~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~----------------- 300 (401)
T 4fdw_A 240 IGQEAFRE-SGITTVKLP-NGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCP----------------- 300 (401)
T ss_dssp ECTTTTTT-CCCSEEEEE-TTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCT-----------------
T ss_pred cccccccc-CCccEEEeC-CCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCc-----------------
Confidence 55667777 678888884 4566566778888888888888877654 33444444443
Q ss_pred eeecCCcccCcccccccceEeeecCceecccCCccCCCceEECCCCcccccCcccccccccCCeEeCCCCCCCCCCCccc
Q 003893 556 FVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTF 635 (788)
Q Consensus 556 ~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 635 (788)
+|+.+++. +.++.+...+|.++++|+.++|..| ++.+.+.+|
T Consensus 301 ------------------------------------~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF 342 (401)
T 4fdw_A 301 ------------------------------------KLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAF 342 (401)
T ss_dssp ------------------------------------TCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT-CCEECTTSS
T ss_pred ------------------------------------cCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhC
Confidence 67777776 3466566677777777777777544 655666777
Q ss_pred CCCCCCCeeeCCCcccCccCchhhhcCC-CCcEEecccCcC
Q 003893 636 SNLRNIESLDLSYNKLSWKIPYQLVELN-TLAVFSVAYNNL 675 (788)
Q Consensus 636 ~~l~~L~~L~Ls~N~l~~~~~~~l~~l~-~L~~L~l~~N~l 675 (788)
.++ +|+.+++++|.+....+..|..++ .++.+.+..+.+
T Consensus 343 ~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~ 382 (401)
T 4fdw_A 343 NNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESV 382 (401)
T ss_dssp SSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGH
T ss_pred CCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHH
Confidence 777 777777777777665566666653 566777666544
No 124
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.64 E-value=1.9e-18 Score=191.81 Aligned_cols=77 Identities=22% Similarity=0.191 Sum_probs=54.0
Q ss_pred CCceEECCCCcccccCcccccccccCCeEeCCCCCCCCCC-CcccCCCCCCCeeeCCCcccCccCch---hhhcCCCCcE
Q 003893 592 LLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPI-PSTFSNLRNIESLDLSYNKLSWKIPY---QLVELNTLAV 667 (788)
Q Consensus 592 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L~Ls~N~l~~~~~~---~l~~l~~L~~ 667 (788)
+|+.|+|++|.+++ +| .++.+++|+.|+|++|+|++.. |..|+.+++|+.|+|++|++++..|. .+..+++|+.
T Consensus 487 ~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~ 564 (567)
T 1dce_A 487 CLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSS 564 (567)
T ss_dssp TCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSE
T ss_pred CCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCc
Confidence 55566666666654 44 6777788888888888888765 77788888888888888888765442 2334778888
Q ss_pred Eec
Q 003893 668 FSV 670 (788)
Q Consensus 668 L~l 670 (788)
||+
T Consensus 565 L~l 567 (567)
T 1dce_A 565 ILT 567 (567)
T ss_dssp EEC
T ss_pred cCC
Confidence 764
No 125
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.64 E-value=4.2e-15 Score=158.65 Aligned_cols=249 Identities=14% Similarity=0.151 Sum_probs=118.8
Q ss_pred CCCCcEEEeeCCcCCCCCCccccCCCCCCEEEccCCcCCCccchHHhhCCCCCcEEEccccccCccccccccCCCccCce
Q 003893 272 LSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWL 351 (788)
Q Consensus 272 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L 351 (788)
+.+|+.+.+..+ ++.+...+|.++++|+.+++.++ ++ .++...|.++.+|+.+.+..+ +......+|.++..++..
T Consensus 70 c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~-~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~~~~~~~~~ 145 (394)
T 4fs7_A 70 CRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VK-MIGRCTFSGCYALKSILLPLM-LKSIGVEAFKGCDFKEIT 145 (394)
T ss_dssp CTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CC-EECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTCCCSEEE
T ss_pred CCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ce-EccchhhcccccchhhcccCc-eeeecceeeecccccccc
Confidence 444444444322 33333344555555555555432 33 444444545555555444322 222333344333322221
Q ss_pred eccCccCcccCCccCCCCCCCcEEEcccCcCCCCCCccccCCCCccEEEccCCeeccCchhhhhcccCCcEEeccCCcCC
Q 003893 352 QLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNIS 431 (788)
Q Consensus 352 ~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~ 431 (788)
.... .......+|.++++|+.+.+..+. .......|.++++|+.+.+..+ +..+...+|.++..|+.+.+..+...
T Consensus 146 ~~~~--~~~i~~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~ 221 (394)
T 4fs7_A 146 IPEG--VTVIGDEAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYY 221 (394)
T ss_dssp CCTT--CCEECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCE
T ss_pred cCcc--ccccchhhhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCceE
Confidence 1111 112334456666666666665442 2244455666666666666554 33344556666666666666554322
Q ss_pred CCCCCCCCCCcccEEEccCcccccccCcccccccccccEEeCCCCccCCCCCccccCCcCCcEEEccCccCcccCccccc
Q 003893 432 GSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLC 511 (788)
Q Consensus 432 ~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 511 (788)
.....+....|+.+.+..... .+...+|.++..++.+.+..+... .....|..+..++.+....+.+ ....|.
T Consensus 222 -i~~~~~~~~~l~~i~ip~~~~--~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i---~~~~F~ 294 (394)
T 4fs7_A 222 -LGDFALSKTGVKNIIIPDSFT--ELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIV---PEKTFY 294 (394)
T ss_dssp -ECTTTTTTCCCCEEEECTTCC--EECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSEE---CTTTTT
T ss_pred -eehhhcccCCCceEEECCCce--ecccccccccccceeEEcCCCcce-eeccccccccccceeccCceee---cccccc
Confidence 222233344555555543221 233445666666666666655332 4445566666666666554432 223455
Q ss_pred CCCCCCEEEccCCcCCccCcccccc
Q 003893 512 RLNQLQLLDLSNNNLHGHIPSCFDN 536 (788)
Q Consensus 512 ~l~~L~~L~L~~n~l~~~~~~~~~~ 536 (788)
.+.+|+.+.+.++ +..+...+|..
T Consensus 295 ~~~~L~~i~l~~~-i~~I~~~aF~~ 318 (394)
T 4fs7_A 295 GCSSLTEVKLLDS-VKFIGEEAFES 318 (394)
T ss_dssp TCTTCCEEEECTT-CCEECTTTTTT
T ss_pred ccccccccccccc-cceechhhhcC
Confidence 5666666665433 33333344433
No 126
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.62 E-value=4.9e-18 Score=188.49 Aligned_cols=205 Identities=21% Similarity=0.188 Sum_probs=148.5
Q ss_pred cCCCCccEEEccCCeeccCchhhhhcccCCcEEeccCCcCCCCCCCCCCCCcccEEEccCcccccccCcccccccccccE
Q 003893 391 GNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMI 470 (788)
Q Consensus 391 ~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~ 470 (788)
..++.|+.|++++|.+. .+|..+..+++|+.|++++|......+. .+..+...+..+. .+.++++|+.
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~----------ll~~~~~~~~~~~-~l~~l~~L~~ 413 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIIL----------LMRALDPLLYEKE-TLQYFSTLKA 413 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHH----------HHHHHCTGGGHHH-HHHHHHHHHH
T ss_pred ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHH----------HHHhcccccCCHH-HHHHHHhccc
Confidence 45677888888888876 6677888888888888866532100000 0001111222222 5666777777
Q ss_pred Ee-CCCCccCCCCCccccCCcCCcEEEccCccCcccCcccccCCCCCCEEEccCCcCCccCcccccccchhhhccCCCCC
Q 003893 471 LD-LSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHERYNNGSSL 549 (788)
Q Consensus 471 L~-l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~ 549 (788)
|+ ++.|.+ .+|+.+.+.+|.++...+ ..|+.|++++|.+++. |. +..++
T Consensus 414 L~~l~~n~~-----------~~L~~l~l~~n~i~~l~~------~~L~~L~Ls~n~l~~l-p~-~~~l~----------- 463 (567)
T 1dce_A 414 VDPMRAAYL-----------DDLRSKFLLENSVLKMEY------ADVRVLHLAHKDLTVL-CH-LEQLL----------- 463 (567)
T ss_dssp HCGGGHHHH-----------HHHHHHHHHHHHHHHHHH------TTCSEEECTTSCCSSC-CC-GGGGT-----------
T ss_pred Ccchhhccc-----------chhhhhhhhcccccccCc------cCceEEEecCCCCCCC-cC-ccccc-----------
Confidence 76 555433 345556666676653222 2488999999998864 43 55444
Q ss_pred CCcccceeecCCcccCcccccccceEeeecCceecccCCccCCCceEECCCCcccccCcccccccccCCeEeCCCCCCCC
Q 003893 550 QPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAG 629 (788)
Q Consensus 550 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 629 (788)
+|+.|+|++|.++ .+|..++.+++|+.|+|++|+|++
T Consensus 464 ------------------------------------------~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~ 500 (567)
T 1dce_A 464 ------------------------------------------LVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN 500 (567)
T ss_dssp ------------------------------------------TCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC
T ss_pred ------------------------------------------cCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC
Confidence 7999999999998 778899999999999999999996
Q ss_pred CCCcccCCCCCCCeeeCCCcccCccC-chhhhcCCCCcEEecccCcCcccCCCC
Q 003893 630 PIPSTFSNLRNIESLDLSYNKLSWKI-PYQLVELNTLAVFSVAYNNLSGKIPER 682 (788)
Q Consensus 630 ~~~~~~~~l~~L~~L~Ls~N~l~~~~-~~~l~~l~~L~~L~l~~N~l~~~~~~~ 682 (788)
+| .|+.+++|++|+|++|+|++.. |..+..+++|+.|++++|++++.+|..
T Consensus 501 -lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~ 552 (567)
T 1dce_A 501 -VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQ 552 (567)
T ss_dssp -CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCT
T ss_pred -Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHH
Confidence 56 7999999999999999999876 999999999999999999999887653
No 127
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.61 E-value=3.3e-15 Score=139.93 Aligned_cols=115 Identities=23% Similarity=0.283 Sum_probs=106.1
Q ss_pred cCCCceEECCCCcccccCcccccccccCCeEeCCCCCCCCCCCcccCCCCCCCeeeCCCcccCccCchhhhcCCCCcEEe
Q 003893 590 PSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFS 669 (788)
Q Consensus 590 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~ 669 (788)
+++|++|++++|++++..+..|..+++|++|++++|++++..+..|..+++|++|++++|++++..+..+..+++|++|+
T Consensus 27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~ 106 (177)
T 2o6r_A 27 PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELA 106 (177)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEE
Confidence 45899999999999988888889999999999999999988888899999999999999999987777889999999999
Q ss_pred cccCcCcccCCCCccccCCCCcCCcCCCCCCCCCC
Q 003893 670 VAYNNLSGKIPERAAQFATFNESSYEGNPFLCGPP 704 (788)
Q Consensus 670 l~~N~l~~~~~~~~~~~~~l~~~~~~~Np~~C~~~ 704 (788)
+++|.+++..+..+..+++++.+++++||+.|+|+
T Consensus 107 l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 107 LDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp CCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 99999998877777889999999999999999886
No 128
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.60 E-value=2.8e-15 Score=139.15 Aligned_cols=86 Identities=24% Similarity=0.215 Sum_probs=52.7
Q ss_pred CCceEECCCCcccccCcccccccccCCeEeCCCCCCCCCCC-cccCCCCCCCeeeCCCcccCccCc---hhhhcCCCCcE
Q 003893 592 LLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIP-STFSNLRNIESLDLSYNKLSWKIP---YQLVELNTLAV 667 (788)
Q Consensus 592 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~~---~~l~~l~~L~~ 667 (788)
+|++|++++|.+++.+|..+..+++|+.|++++|++++..+ ..+..+++|++|++++|++++..+ ..+..+++|+.
T Consensus 72 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~ 151 (168)
T 2ell_A 72 KLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTY 151 (168)
T ss_dssp SCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCE
T ss_pred CCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcE
Confidence 34444444444444445555556667777777777664322 566677777777777777765444 36666777777
Q ss_pred EecccCcCcc
Q 003893 668 FSVAYNNLSG 677 (788)
Q Consensus 668 L~l~~N~l~~ 677 (788)
|++++|.+..
T Consensus 152 L~l~~n~~~~ 161 (168)
T 2ell_A 152 LDGYDREDQE 161 (168)
T ss_dssp ETTEETTSCB
T ss_pred ecCCCCChhh
Confidence 7777776653
No 129
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.60 E-value=2.6e-15 Score=139.32 Aligned_cols=137 Identities=23% Similarity=0.226 Sum_probs=114.0
Q ss_pred cccccEEeCCCCccC-CCCCccccCCcCCcEEEccCccCcccCcccccCCCCCCEEEccCCcCCccCcccccccchhhhc
Q 003893 465 CLTLMILDLSYNHLN-GNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHERY 543 (788)
Q Consensus 465 ~~~L~~L~l~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~ 543 (788)
.++|++|++++|.++ +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|.+++.+|..+..++
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~----- 95 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLP----- 95 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCT-----
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCC-----
Confidence 467899999999987 56777788899999999999998855 6788899999999999999877666655444
Q ss_pred cCCCCCCCcccceeecCCcccCcccccccceEeeecCceecccCCccCCCceEECCCCcccccC-cccccccccCCeEeC
Q 003893 544 NNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHI-PPQIGNLTKIQTLNL 622 (788)
Q Consensus 544 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~L 622 (788)
+|++|++++|.+++.. +..+..+++|+.|++
T Consensus 96 ------------------------------------------------~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l 127 (168)
T 2ell_A 96 ------------------------------------------------NLTHLNLSGNKLKDISTLEPLKKLECLKSLDL 127 (168)
T ss_dssp ------------------------------------------------TCCEEECBSSSCCSSGGGGGGSSCSCCCEEEC
T ss_pred ------------------------------------------------CCCEEeccCCccCcchhHHHHhcCCCCCEEEe
Confidence 7999999999998643 378899999999999
Q ss_pred CCCCCCCCCC---cccCCCCCCCeeeCCCcccCccCch
Q 003893 623 SHNNLAGPIP---STFSNLRNIESLDLSYNKLSWKIPY 657 (788)
Q Consensus 623 s~N~l~~~~~---~~~~~l~~L~~L~Ls~N~l~~~~~~ 657 (788)
++|++++..+ ..+..+++|++|++++|.+.. .|.
T Consensus 128 ~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~-~~~ 164 (168)
T 2ell_A 128 FNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQE-APD 164 (168)
T ss_dssp CSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCB-CCS
T ss_pred eCCcCcchHHHHHHHHHhCccCcEecCCCCChhh-ccc
Confidence 9999997665 588999999999999999873 443
No 130
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.59 E-value=1.1e-14 Score=138.06 Aligned_cols=87 Identities=30% Similarity=0.322 Sum_probs=62.0
Q ss_pred CCceEECCCCcccccCcccccccccCCeEeCCCCCCCCCCCcccCCCCCCCeeeCCCcccCccCchhhhcCCCCcEEecc
Q 003893 592 LLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVA 671 (788)
Q Consensus 592 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~ 671 (788)
+|+.|++++|.+++..+..|.++++|++|+|++|+|++..|..|..+++|++|+|++|+|+...+..|..+++|+.|+++
T Consensus 55 ~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~ 134 (193)
T 2wfh_A 55 HLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIG 134 (193)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECC
T ss_pred CCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeC
Confidence 45555555555555555667777777777777777777777777777777777777777776555567777778888888
Q ss_pred cCcCccc
Q 003893 672 YNNLSGK 678 (788)
Q Consensus 672 ~N~l~~~ 678 (788)
+|++.+.
T Consensus 135 ~N~~~C~ 141 (193)
T 2wfh_A 135 ANPLYCD 141 (193)
T ss_dssp SSCEECS
T ss_pred CCCeecC
Confidence 8877764
No 131
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.58 E-value=4.1e-15 Score=134.86 Aligned_cols=80 Identities=25% Similarity=0.236 Sum_probs=53.6
Q ss_pred CCceEECCCCcccccCcccccccccCCeEeCCCCCCCCC-CCcccCCCCCCCeeeCCCcccCccCc---hhhhcCCCCcE
Q 003893 592 LLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGP-IPSTFSNLRNIESLDLSYNKLSWKIP---YQLVELNTLAV 667 (788)
Q Consensus 592 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~~---~~l~~l~~L~~ 667 (788)
+|++|++++|.+++.+|..+..+++|++|++++|++++. .+..+..+++|++|++++|++++..+ ..+..+++|+.
T Consensus 65 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~ 144 (149)
T 2je0_A 65 KLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTY 144 (149)
T ss_dssp TCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCE
T ss_pred CCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCccc
Confidence 455555555665555566666677777777777777753 23667777777777777777776554 46777777777
Q ss_pred Eecc
Q 003893 668 FSVA 671 (788)
Q Consensus 668 L~l~ 671 (788)
||++
T Consensus 145 L~l~ 148 (149)
T 2je0_A 145 LDGY 148 (149)
T ss_dssp ETTB
T ss_pred ccCC
Confidence 7765
No 132
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.58 E-value=1.4e-14 Score=135.70 Aligned_cols=89 Identities=25% Similarity=0.240 Sum_probs=51.6
Q ss_pred CCceEECCCCcccccCcccccccccCCeEeCCCCCCCCCCCcccCCCCCCCeeeCCCcccCccCchhhhcCCCCcEEecc
Q 003893 592 LLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVA 671 (788)
Q Consensus 592 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~ 671 (788)
+|++|++++|.+++..+..|..+++|+.|++++|++++..+..|..+++|++|++++|++++..+..+..+++|+.|+++
T Consensus 53 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 132 (177)
T 2o6r_A 53 QLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLH 132 (177)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECC
T ss_pred cccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEec
Confidence 34444444444444444445556666666666666665555556666666666666666665444445556666666666
Q ss_pred cCcCcccCC
Q 003893 672 YNNLSGKIP 680 (788)
Q Consensus 672 ~N~l~~~~~ 680 (788)
+|++++..|
T Consensus 133 ~N~~~~~~~ 141 (177)
T 2o6r_A 133 TNPWDCSCP 141 (177)
T ss_dssp SSCBCCCHH
T ss_pred CCCeeccCc
Confidence 666665443
No 133
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.57 E-value=7.9e-14 Score=148.79 Aligned_cols=317 Identities=10% Similarity=0.051 Sum_probs=209.9
Q ss_pred CCCCCCccccCCCCCCEEEccCCcCCCccchHHhhCCCCCcEEEccccccCccccccccCCCccCceeccCccCcccCCc
Q 003893 285 LDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQ 364 (788)
Q Consensus 285 l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~ 364 (788)
++.+...+|.++.+|+.+.+..+ ++ .++...|.+|.+|+.+++..+ ++.+...+|.++.+|+.+.+..+ +......
T Consensus 59 VtsIg~~AF~~c~~L~~i~lp~~-i~-~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~ 134 (394)
T 4fs7_A 59 VVSIGYAAFQGCRKVTEIKIPST-VR-EIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVE 134 (394)
T ss_dssp EEEECTTTTTTCTTEEEEECCTT-CC-EECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTT
T ss_pred EeEhHHHHhhCCCCceEEEeCCC-cc-CcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecce
Confidence 44455668999999999999754 77 888888889999999999755 66677788889999999888755 4446667
Q ss_pred cCCCCCCCcEEEcccCcCCCCCCccccCCCCccEEEccCCeeccCchhhhhcccCCcEEeccCCcCCCCCCCCC-CCCcc
Q 003893 365 SLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCY-DFVCI 443 (788)
Q Consensus 365 ~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~-~~~~L 443 (788)
+|.++..++...... .......+|.++++|+.+.+.++. ......+|.++.+|+.+++..+ +.......+ .+..|
T Consensus 135 aF~~~~~~~~~~~~~--~~~i~~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L 210 (394)
T 4fs7_A 135 AFKGCDFKEITIPEG--VTVIGDEAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILL 210 (394)
T ss_dssp TTTTCCCSEEECCTT--CCEECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTC
T ss_pred eeecccccccccCcc--ccccchhhhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ceEeCchhhcccccc
Confidence 777776544333222 222445678889999999997654 3356678888899998888765 332222222 24555
Q ss_pred cEEEccCcccccccCcccccccccccEEeCCCCccCCCCCccccCCcCCcEEEccCccCcccCcccccCCCCCCEEEccC
Q 003893 444 EQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSN 523 (788)
Q Consensus 444 ~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 523 (788)
+.+.+..+.. .+.. .+..+..|+.+.+... ++.+....|.++..++.+.+..+... .....|..+..++.+....
T Consensus 211 ~~i~~~~~~~--~i~~-~~~~~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~ 285 (394)
T 4fs7_A 211 ENMEFPNSLY--YLGD-FALSKTGVKNIIIPDS-FTELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGS 285 (394)
T ss_dssp CBCCCCTTCC--EECT-TTTTTCCCCEEEECTT-CCEECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECS
T ss_pred ceeecCCCce--Eeeh-hhcccCCCceEEECCC-ceecccccccccccceeEEcCCCcce-eeccccccccccceeccCc
Confidence 5555444322 1222 2233445666655433 22233345556666666666555333 4444556666666665544
Q ss_pred CcCCccCcccccccchhhhccCCCCCCCcccceeecCCcccCcccccccceEeeecCceecccCCccCCCceEECCCCcc
Q 003893 524 NNLHGHIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRL 603 (788)
Q Consensus 524 n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l 603 (788)
+.+. ..+|... .+|+.+.+.++ +
T Consensus 286 ~~i~---~~~F~~~-----------------------------------------------------~~L~~i~l~~~-i 308 (394)
T 4fs7_A 286 VIVP---EKTFYGC-----------------------------------------------------SSLTEVKLLDS-V 308 (394)
T ss_dssp SEEC---TTTTTTC-----------------------------------------------------TTCCEEEECTT-C
T ss_pred eeec---ccccccc-----------------------------------------------------ccccccccccc-c
Confidence 3321 1122221 26777887654 6
Q ss_pred cccCcccccccccCCeEeCCCCCCCCCCCcccCCCCCCCeeeCCCcccCccCchhhhcCCCCcEEecccC
Q 003893 604 IGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYN 673 (788)
Q Consensus 604 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N 673 (788)
+.+...+|.++++|+.++|..+ ++.+...+|.++++|+.+++..+ ++.....+|..+.+|+.+++..+
T Consensus 309 ~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 309 KFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR 376 (394)
T ss_dssp CEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG
T ss_pred ceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC
Confidence 6566778999999999999754 77677789999999999999877 77677788999999999998765
No 134
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.56 E-value=5e-15 Score=134.32 Aligned_cols=129 Identities=22% Similarity=0.282 Sum_probs=107.9
Q ss_pred cccccEEeCCCCccC-CCCCccccCCcCCcEEEccCccCcccCcccccCCCCCCEEEccCCcCCccCcccccccchhhhc
Q 003893 465 CLTLMILDLSYNHLN-GNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHERY 543 (788)
Q Consensus 465 ~~~L~~L~l~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~ 543 (788)
.++|++|++++|.++ +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|.+++.+|..+..++
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~----- 88 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCP----- 88 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCT-----
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCC-----
Confidence 467899999999987 67777888899999999999998855 6788899999999999999876666655444
Q ss_pred cCCCCCCCcccceeecCCcccCcccccccceEeeecCceecccCCccCCCceEECCCCccccc-CcccccccccCCeEeC
Q 003893 544 NNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGH-IPPQIGNLTKIQTLNL 622 (788)
Q Consensus 544 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L 622 (788)
+|++|++++|.+++. .+..+..+++|++|++
T Consensus 89 ------------------------------------------------~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l 120 (149)
T 2je0_A 89 ------------------------------------------------NLTHLNLSGNKIKDLSTIEPLKKLENLKSLDL 120 (149)
T ss_dssp ------------------------------------------------TCCEEECTTSCCCSHHHHGGGGGCTTCCEEEC
T ss_pred ------------------------------------------------CCCEEECCCCcCCChHHHHHHhhCCCCCEEeC
Confidence 799999999999864 3478899999999999
Q ss_pred CCCCCCCCCC---cccCCCCCCCeeeCCC
Q 003893 623 SHNNLAGPIP---STFSNLRNIESLDLSY 648 (788)
Q Consensus 623 s~N~l~~~~~---~~~~~l~~L~~L~Ls~ 648 (788)
++|++++..+ ..+..+++|++||+++
T Consensus 121 ~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 121 FNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp TTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred cCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 9999997766 5788899999999874
No 135
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.55 E-value=2.1e-15 Score=172.99 Aligned_cols=191 Identities=20% Similarity=0.232 Sum_probs=82.2
Q ss_pred cCCcEEeccCCcCCCCCCCCCCCCcccEE-----EccCcccccccCcccccccccccEEeCCCCccCCCCCccccCCcCC
Q 003893 418 RILQILDISDNNISGSLPSCYDFVCIEQV-----HLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQL 492 (788)
Q Consensus 418 ~~L~~L~l~~n~~~~~~~~~~~~~~L~~L-----~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L 492 (788)
+.++.|++..|.+............|..+ ++..|.+. ++...+..++.|+.|+|++|.+. .+|..+..+++|
T Consensus 173 ~~~~~l~L~~n~~~~~~~~~l~~l~Ls~~~i~~~~~~~n~~~--~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L 249 (727)
T 4b8c_D 173 PLTPKIELFANGKDEANQALLQHKKLSQYSIDEDDDIENRMV--MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFL 249 (727)
T ss_dssp ---------------------------------------------------CCCCCCEEECTTSCCS-CCCGGGGGCCSC
T ss_pred CccceEEeeCCCCCcchhhHhhcCccCcccccCcccccccee--cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCC
Confidence 55777888777776543333322222222 22222221 23335666666666666666666 344444466666
Q ss_pred cEEEccCccCcccCcccccCCCCCCEEEccCCcCCccCcccccccchhhhccCCCCCCCcccceeecCCcccCccccccc
Q 003893 493 SYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILE 572 (788)
Q Consensus 493 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 572 (788)
++|+|++|.++ .+|..+..+++|++|+|++|.++ .+|..+..+.
T Consensus 250 ~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~---------------------------------- 293 (727)
T 4b8c_D 250 TRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCF---------------------------------- 293 (727)
T ss_dssp SCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGT----------------------------------
T ss_pred CEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCC----------------------------------
Confidence 66666666666 55666666666666666666666 3344444433
Q ss_pred ceEeeecCceecccCCccCCCceEECCCCcccccCcccccccccCCeEeCCCCCCCCCCCcccCCCC-CCCeeeCCCccc
Q 003893 573 SFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLR-NIESLDLSYNKL 651 (788)
Q Consensus 573 ~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~-~L~~L~Ls~N~l 651 (788)
+|++|+|++|.++ .+|..|..+++|+.|+|++|++++.+|..+..+. .+..+++++|.+
T Consensus 294 -------------------~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l 353 (727)
T 4b8c_D 294 -------------------QLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRP 353 (727)
T ss_dssp -------------------TCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred -------------------CCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcc
Confidence 5666666666665 4455566666666666666666665555554321 122356666666
Q ss_pred CccCchhhhcCCCCcEEecccC
Q 003893 652 SWKIPYQLVELNTLAVFSVAYN 673 (788)
Q Consensus 652 ~~~~~~~l~~l~~L~~L~l~~N 673 (788)
++.+|. .|+.|++++|
T Consensus 354 ~~~~p~------~l~~l~l~~n 369 (727)
T 4b8c_D 354 EIPLPH------ERRFIEINTD 369 (727)
T ss_dssp CCCCCC------C---------
T ss_pred cCcCcc------ccceeEeecc
Confidence 655553 3445555555
No 136
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.55 E-value=1.1e-15 Score=175.29 Aligned_cols=219 Identities=21% Similarity=0.215 Sum_probs=120.2
Q ss_pred CCccEEEccCCeeccCchhhhhcccCCc-----EEeccCCcCCCCCCCCCCCCcccEEEccCcccccccCcccccccccc
Q 003893 394 TVLRHIIMPKNHIEGPIPLEFCQLRILQ-----ILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTL 468 (788)
Q Consensus 394 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~-----~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L 468 (788)
+.++.|.+.+|.+... +..+.....|. .++++.|.+......+..+..|+.|++++|.+. .++. .+..+++|
T Consensus 173 ~~~~~l~L~~n~~~~~-~~~~l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~-~~~~l~~L 249 (727)
T 4b8c_D 173 PLTPKIELFANGKDEA-NQALLQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIF-NISA-NIFKYDFL 249 (727)
T ss_dssp --------------------------------------------------CCCCCCEEECTTSCCS-CCCG-GGGGCCSC
T ss_pred CccceEEeeCCCCCcc-hhhHhhcCccCcccccCccccccceecChhhhccCCCCcEEECCCCCCC-CCCh-hhcCCCCC
Confidence 5678888888887753 33222222222 233333444322223345889999999999987 6666 45589999
Q ss_pred cEEeCCCCccCCCCCccccCCcCCcEEEccCccCcccCcccccCCCCCCEEEccCCcCCccCcccccccchhhhccCCCC
Q 003893 469 MILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHERYNNGSS 548 (788)
Q Consensus 469 ~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~ 548 (788)
++|+|++|.++ .+|..|..+++|++|+|++|.++ .+|..+..+++|++|+|++|.++ .+|..|..+.
T Consensus 250 ~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~---------- 316 (727)
T 4b8c_D 250 TRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLC---------- 316 (727)
T ss_dssp SCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCT----------
T ss_pred CEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCC----------
Confidence 99999999999 78888999999999999999999 77889999999999999999997 4455566655
Q ss_pred CCCcccceeecCCcccCcccccccceEeeecCceecccCCccCCCceEECCCCcccccCccccccccc-CCeEeCCCCCC
Q 003893 549 LQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTK-IQTLNLSHNNL 627 (788)
Q Consensus 549 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~-L~~L~Ls~N~l 627 (788)
+|+.|+|++|.+++.+|..+..+.. +..|+|++|.+
T Consensus 317 -------------------------------------------~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l 353 (727)
T 4b8c_D 317 -------------------------------------------NLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRP 353 (727)
T ss_dssp -------------------------------------------TCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred -------------------------------------------CccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcc
Confidence 8999999999999988888866532 23578999999
Q ss_pred CCCCCcccCCCCCCCeeeCCCc--------ccCccCchhhhcCCCCcEEecccCcCcc
Q 003893 628 AGPIPSTFSNLRNIESLDLSYN--------KLSWKIPYQLVELNTLAVFSVAYNNLSG 677 (788)
Q Consensus 628 ~~~~~~~~~~l~~L~~L~Ls~N--------~l~~~~~~~l~~l~~L~~L~l~~N~l~~ 677 (788)
++.+|.. |+.|++++| .+....+..+..+..+....+++|-+.+
T Consensus 354 ~~~~p~~------l~~l~l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~Nil~~ 405 (727)
T 4b8c_D 354 EIPLPHE------RRFIEINTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSYNTLCQ 405 (727)
T ss_dssp CCCCCCC-----------------------------------------------CCCG
T ss_pred cCcCccc------cceeEeecccccccccCCccccccchhhcccccceeeeecccccc
Confidence 9887764 456777777 4444445555666677777888887753
No 137
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.53 E-value=2.7e-14 Score=132.24 Aligned_cols=110 Identities=24% Similarity=0.273 Sum_probs=89.1
Q ss_pred CCceEECCCCcccccCcccccccccCCeEeCCCCCCCCCCCcccCCCCCCCeeeCCCcccCccCchhhhcCCCCcEEecc
Q 003893 592 LLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVA 671 (788)
Q Consensus 592 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~ 671 (788)
..+.+++++|.++. +|..+. ++|+.|+|++|+|++..|..|..+++|++|+|++|+|++..+..|..+++|++|+++
T Consensus 10 ~~~~l~~s~n~l~~-ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~ 86 (170)
T 3g39_A 10 SGTTVDCSGKSLAS-VPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN 86 (170)
T ss_dssp ETTEEECTTSCCSS-CCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEEeCCCCcCc-cCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence 35678888888874 555443 788888888888888878888888888888888888887777777888888888888
Q ss_pred cCcCcccCCCCccccCCCCcCCcCCCCCCCCCC
Q 003893 672 YNNLSGKIPERAAQFATFNESSYEGNPFLCGPP 704 (788)
Q Consensus 672 ~N~l~~~~~~~~~~~~~l~~~~~~~Np~~C~~~ 704 (788)
+|++++..+..+..+++++.+++.+|||.|+|+
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~ 119 (170)
T 3g39_A 87 DNQLKSIPRGAFDNLKSLTHIWLLNNPWDCACS 119 (170)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCBCTTBG
T ss_pred CCccCEeCHHHhcCCCCCCEEEeCCCCCCCCch
Confidence 888888777777888888888888888888875
No 138
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.50 E-value=7.3e-14 Score=129.69 Aligned_cols=109 Identities=22% Similarity=0.249 Sum_probs=84.9
Q ss_pred CceEECCCCcccccCcccccccccCCeEeCCCCCCCCCCCcccCCCCCCCeeeCCCcccCccCchhhhcCCCCcEEeccc
Q 003893 593 LSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAY 672 (788)
Q Consensus 593 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~ 672 (788)
-+.+++++|+++ .+|..+. ++|+.|+|++|+|++..|..|.++++|++|+|++|+|++..+..|..+++|+.|++++
T Consensus 14 ~~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 14 QTLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp SSEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CcEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence 356888888886 4555443 7788888888888877788888888888888888888876666677888888888888
Q ss_pred CcCcccCCCCccccCCCCcCCcCCCCCCCCCC
Q 003893 673 NNLSGKIPERAAQFATFNESSYEGNPFLCGPP 704 (788)
Q Consensus 673 N~l~~~~~~~~~~~~~l~~~~~~~Np~~C~~~ 704 (788)
|.+++..+..+..+++++.+++.+|||.|+|.
T Consensus 91 N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~ 122 (174)
T 2r9u_A 91 NHLKSIPRGAFDNLKSLTHIYLYNNPWDCECR 122 (174)
T ss_dssp SCCCCCCTTTTTTCTTCSEEECCSSCBCTTBG
T ss_pred CccceeCHHHhccccCCCEEEeCCCCcccccc
Confidence 88887766667778888888888888888775
No 139
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.48 E-value=1.3e-13 Score=128.77 Aligned_cols=83 Identities=17% Similarity=0.164 Sum_probs=53.7
Q ss_pred CCceEECCCCcccccCcccccccccCCeEeCCCCCCCCCCCc--ccCCCCCCCeeeCCCcccCccCch----hhhcCCCC
Q 003893 592 LLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPS--TFSNLRNIESLDLSYNKLSWKIPY----QLVELNTL 665 (788)
Q Consensus 592 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~--~~~~l~~L~~L~Ls~N~l~~~~~~----~l~~l~~L 665 (788)
+|++|++++|.+++..+..+..+++|+.|++++|+++. +|. .+..+++|++|++++|+++. .|. .+..+++|
T Consensus 65 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~-~~~~~~l~~l~~L~~L~l~~N~i~~-~~~~~~~~~~~l~~L 142 (176)
T 1a9n_A 65 RLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVE-LGDLDPLASLKSLTYLCILRNPVTN-KKHYRLYVIYKVPQV 142 (176)
T ss_dssp SCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCCC-GGGGGGGGGCTTCCEEECCSSGGGG-STTHHHHHHHHCTTC
T ss_pred CCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCCc-chhhHhhhcCCCCCEEEecCCCCCC-cHhHHHHHHHHCCcc
Confidence 45555555555554444445667777777777777753 343 66677777777777777763 444 36777777
Q ss_pred cEEecccCcCc
Q 003893 666 AVFSVAYNNLS 676 (788)
Q Consensus 666 ~~L~l~~N~l~ 676 (788)
+.||+++|...
T Consensus 143 ~~Ld~~~n~~~ 153 (176)
T 1a9n_A 143 RVLDFQKVKLK 153 (176)
T ss_dssp SEETTEECCHH
T ss_pred ceeCCCcCCHH
Confidence 77777777654
No 140
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.46 E-value=9.3e-14 Score=129.73 Aligned_cols=135 Identities=19% Similarity=0.158 Sum_probs=110.5
Q ss_pred cccccccccEEeCCCCccCCCCCccccCCcCCcEEEccCccCcccCcccccCCCCCCEEEccCCcCCccCcccccccchh
Q 003893 461 TFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLH 540 (788)
Q Consensus 461 ~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~ 540 (788)
.+.++++|++|++++|+++. ++......++|+.|++++|.+++. ..+..+++|++|++++|.+++..+..+..++
T Consensus 14 ~~~~~~~L~~L~l~~n~l~~-i~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~-- 88 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALP-- 88 (176)
T ss_dssp EEECTTSCEEEECTTSCCCS-CCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCT--
T ss_pred hcCCcCCceEEEeeCCCCch-hHHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCC--
Confidence 46778899999999999984 454333344999999999999865 5788999999999999999877666555554
Q ss_pred hhccCCCCCCCcccceeecCCcccCcccccccceEeeecCceecccCCccCCCceEECCCCcccccCcc--cccccccCC
Q 003893 541 ERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPP--QIGNLTKIQ 618 (788)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~--~~~~l~~L~ 618 (788)
+|++|++++|.++. +|. .+..+++|+
T Consensus 89 ---------------------------------------------------~L~~L~L~~N~i~~-~~~~~~l~~l~~L~ 116 (176)
T 1a9n_A 89 ---------------------------------------------------DLTELILTNNSLVE-LGDLDPLASLKSLT 116 (176)
T ss_dssp ---------------------------------------------------TCCEEECCSCCCCC-GGGGGGGGGCTTCC
T ss_pred ---------------------------------------------------CCCEEECCCCcCCc-chhhHhhhcCCCCC
Confidence 89999999999974 444 788999999
Q ss_pred eEeCCCCCCCCCCCc----ccCCCCCCCeeeCCCcccCc
Q 003893 619 TLNLSHNNLAGPIPS----TFSNLRNIESLDLSYNKLSW 653 (788)
Q Consensus 619 ~L~Ls~N~l~~~~~~----~~~~l~~L~~L~Ls~N~l~~ 653 (788)
.|++++|.++. .|. .+..+++|+.||+++|.+..
T Consensus 117 ~L~l~~N~i~~-~~~~~~~~~~~l~~L~~Ld~~~n~~~~ 154 (176)
T 1a9n_A 117 YLCILRNPVTN-KKHYRLYVIYKVPQVRVLDFQKVKLKE 154 (176)
T ss_dssp EEECCSSGGGG-STTHHHHHHHHCTTCSEETTEECCHHH
T ss_pred EEEecCCCCCC-cHhHHHHHHHHCCccceeCCCcCCHHH
Confidence 99999999984 455 48899999999999998863
No 141
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.46 E-value=5.1e-12 Score=134.71 Aligned_cols=322 Identities=13% Similarity=0.138 Sum_probs=151.3
Q ss_pred CcEEEeeCCcCCCCCCccccCCCCCCEEEccCCc---CCCccchHHhhCCCCCcEEEccccccCccccccccCCCccCce
Q 003893 275 LTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQ---LTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWL 351 (788)
Q Consensus 275 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~---i~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L 351 (788)
|+.+.+..+ ++.+...+|.++.+|+.+.+..+. ++ .+....|.+|.+|+.+.+..+ ++.+....|.++.+|+.+
T Consensus 66 L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~-~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c~~L~~i 142 (394)
T 4gt6_A 66 LTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVK-KIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHCEELDTV 142 (394)
T ss_dssp CCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCC-EECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTCTTCCEE
T ss_pred CEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeee-EechhhchhcccceeeccCCc-cceehhhhhhhhcccccc
Confidence 444444432 333444445555555555554432 33 444555555555555544332 333444455555555555
Q ss_pred eccCccCcccCCccCCCCCCCcEEEcccCcCCCCCCccccCCCCccEEEccCCeeccCchhhhhcccCCcEEeccCCcCC
Q 003893 352 QLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNIS 431 (788)
Q Consensus 352 ~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~ 431 (788)
.+..+. ..+....|..+..|+.+.+..+ +......+|.+ ..|+.+.+..+-. .....+|..+..++..........
T Consensus 143 ~lp~~~-~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~-~~l~~i~ip~~~~-~i~~~af~~c~~l~~~~~~~~~~~ 218 (394)
T 4gt6_A 143 TIPEGV-TSVADGMFSYCYSLHTVTLPDS-VTAIEERAFTG-TALTQIHIPAKVT-RIGTNAFSECFALSTITSDSESYP 218 (394)
T ss_dssp ECCTTC-CEECTTTTTTCTTCCEEECCTT-CCEECTTTTTT-CCCSEEEECTTCC-EECTTTTTTCTTCCEEEECCSSSC
T ss_pred ccccee-eeecccceecccccccccccce-eeEeccccccc-cceeEEEECCccc-ccccchhhhccccceecccccccc
Confidence 554332 2244445555666666655443 22233333432 4466665554322 233445555666655554443322
Q ss_pred CCCCCCCCCCcccEEEccCcccccccCcccccccccccEEeCCCCccCCCCCccccCCcCCcEEEccCccCcccCccccc
Q 003893 432 GSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLC 511 (788)
Q Consensus 432 ~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 511 (788)
......+...... ......+.....+..+.+... ++.+...+|.++.+|+.+.+.++... ....+|.
T Consensus 219 ~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~ip~~-v~~i~~~aF~~c~~L~~i~lp~~~~~-I~~~aF~ 285 (394)
T 4gt6_A 219 AIDNVLYEKSANG-----------DYALIRYPSQREDPAFKIPNG-VARIETHAFDSCAYLASVKMPDSVVS-IGTGAFM 285 (394)
T ss_dssp BSSSCEEEECTTS-----------CEEEEECCTTCCCSEEECCTT-EEEECTTTTTTCSSCCEEECCTTCCE-ECTTTTT
T ss_pred cccceeecccccc-----------cccccccccccccceEEcCCc-ceEcccceeeecccccEEecccccce-ecCcccc
Confidence 1110000000000 000001111222333333221 22233345556666666666544332 4445566
Q ss_pred CCCCCCEEEccCCcCCccCcccccccchhhhccCCCCCCCcccceeecCCcccCcccccccceEeeecCceecccCCccC
Q 003893 512 RLNQLQLLDLSNNNLHGHIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPS 591 (788)
Q Consensus 512 ~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~ 591 (788)
++++|+.+.+. +.++.+...+|..+.
T Consensus 286 ~c~~L~~i~l~-~~i~~I~~~aF~~c~----------------------------------------------------- 311 (394)
T 4gt6_A 286 NCPALQDIEFS-SRITELPESVFAGCI----------------------------------------------------- 311 (394)
T ss_dssp TCTTCCEEECC-TTCCEECTTTTTTCT-----------------------------------------------------
T ss_pred cccccccccCC-CcccccCceeecCCC-----------------------------------------------------
Confidence 66666666664 334444444444433
Q ss_pred CCceEECCCCcccccCcccccccccCCeEeCCCCCCCCCCCcccCCCCCCCeeeCCCcccCccCchhhhcCCCCcEEecc
Q 003893 592 LLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVA 671 (788)
Q Consensus 592 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~ 671 (788)
+|+.+++..+ ++.+...+|.++.+|+.+.+..+ ++.+...+|.++++|+.+++.++.... ..+....+|+.+.+.
T Consensus 312 ~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~~---~~~~~~~~L~~i~i~ 386 (394)
T 4gt6_A 312 SLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQW---NAISTDSGLQNLPVA 386 (394)
T ss_dssp TCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHHH---HTCBCCCCC------
T ss_pred CcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceeeh---hhhhccCCCCEEEeC
Confidence 5666666543 44455667777888888888654 665666778888888888888776542 345556677777766
Q ss_pred cCcC
Q 003893 672 YNNL 675 (788)
Q Consensus 672 ~N~l 675 (788)
.|.+
T Consensus 387 ~~~~ 390 (394)
T 4gt6_A 387 PGSI 390 (394)
T ss_dssp ----
T ss_pred CCCE
Confidence 5543
No 142
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.44 E-value=5e-13 Score=123.66 Aligned_cols=90 Identities=21% Similarity=0.193 Sum_probs=84.5
Q ss_pred CCCceEECCCCcccccCcccccccccCCeEeCCCCCCCCCCCcccCCCCCCCeeeCCCcccCccCchhhhcCCCCcEEec
Q 003893 591 SLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSV 670 (788)
Q Consensus 591 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l 670 (788)
+.+++|+|++|++++..|..|..+++|++|+|++|+|+++.+..|..+++|++|+|++|+|++..+..|..+++|+.|++
T Consensus 30 ~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 109 (170)
T 3g39_A 30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWL 109 (170)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEe
Confidence 48999999999999998999999999999999999999888888999999999999999999877778999999999999
Q ss_pred ccCcCcccCC
Q 003893 671 AYNNLSGKIP 680 (788)
Q Consensus 671 ~~N~l~~~~~ 680 (788)
++|++++..+
T Consensus 110 ~~N~~~c~c~ 119 (170)
T 3g39_A 110 LNNPWDCACS 119 (170)
T ss_dssp CSSCBCTTBG
T ss_pred CCCCCCCCch
Confidence 9999998765
No 143
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.41 E-value=2.8e-15 Score=143.20 Aligned_cols=156 Identities=21% Similarity=0.235 Sum_probs=115.0
Q ss_pred ccccccccEEeCCCCccCCCCCc------cccCCcCCcEEEccCccCcccCcccccCCCCCCEEEccCCcCCccCccccc
Q 003893 462 FFNCLTLMILDLSYNHLNGNIPD------RVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFD 535 (788)
Q Consensus 462 ~~~~~~L~~L~l~~n~i~~~~~~------~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 535 (788)
+.....++.++++.+.+.+..|. .+..+++|++|++++|.+++ +| .+..+++|++|++++|.++.. |..+.
T Consensus 14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~~l-~~~~~ 90 (198)
T 1ds9_A 14 FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIKKI-ENLDA 90 (198)
T ss_dssp HHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEECSC-SSHHH
T ss_pred HHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcccc-cchhh
Confidence 34455666667777766665555 77888888999998888885 55 778888889999888888743 33332
Q ss_pred ccchhhhccCCCCCCCcccceeecCCcccCcccccccceEeeecCceecccCCccCCCceEECCCCcccccCcccccccc
Q 003893 536 NTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLT 615 (788)
Q Consensus 536 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~ 615 (788)
.++ +|+.|++++|++++. | .+..++
T Consensus 91 ~~~-----------------------------------------------------~L~~L~L~~N~l~~l-~-~~~~l~ 115 (198)
T 1ds9_A 91 VAD-----------------------------------------------------TLEELWISYNQIASL-S-GIEKLV 115 (198)
T ss_dssp HHH-----------------------------------------------------HCSEEEEEEEECCCH-H-HHHHHH
T ss_pred cCC-----------------------------------------------------cCCEEECcCCcCCcC-C-ccccCC
Confidence 222 688888888888853 4 578888
Q ss_pred cCCeEeCCCCCCCCCCC-cccCCCCCCCeeeCCCcccCccCch----------hhhcCCCCcEEecccCcCcc
Q 003893 616 KIQTLNLSHNNLAGPIP-STFSNLRNIESLDLSYNKLSWKIPY----------QLVELNTLAVFSVAYNNLSG 677 (788)
Q Consensus 616 ~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~----------~l~~l~~L~~L~l~~N~l~~ 677 (788)
+|+.|++++|++++..+ ..+..+++|++|++++|++++..|. .+..+++|+.|| +|+++.
T Consensus 116 ~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~~ 186 (198)
T 1ds9_A 116 NLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVDV 186 (198)
T ss_dssp HSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGTT
T ss_pred CCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccCH
Confidence 99999999998885433 4688888999999999988766554 277788888887 666653
No 144
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.41 E-value=1.2e-11 Score=131.91 Aligned_cols=135 Identities=10% Similarity=0.132 Sum_probs=77.1
Q ss_pred CcccccccccccEEeCCCCccCCCCCccccCCcCCcEEEccCccCcccCcccccCCCCCCEEEccCCcCCccCccccccc
Q 003893 458 KEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNT 537 (788)
Q Consensus 458 ~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~ 537 (788)
...+|.+|..|+.+.+..+... +...+|.++++|+.+.+. +.++.....+|.++.+|+.+++.++ ++.+...+|..+
T Consensus 257 ~~~aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C 333 (394)
T 4gt6_A 257 ETHAFDSCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGC 333 (394)
T ss_dssp CTTTTTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTC
T ss_pred ccceeeecccccEEecccccce-ecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCC
Confidence 3346667777777776654332 444566667777777765 3344455556777777777777543 444555555554
Q ss_pred chhhhccCCCCCCCcccceeecCCcccCcccccccceEeeecCceecccCCccCCCceEECCCCcccccCcccccccccC
Q 003893 538 TLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKI 617 (788)
Q Consensus 538 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L 617 (788)
. +|+.+.+..+ ++.+...+|.++++|
T Consensus 334 ~-----------------------------------------------------~L~~i~ip~s-v~~I~~~aF~~C~~L 359 (394)
T 4gt6_A 334 E-----------------------------------------------------QLERIAIPSS-VTKIPESAFSNCTAL 359 (394)
T ss_dssp T-----------------------------------------------------TCCEEEECTT-CCBCCGGGGTTCTTC
T ss_pred C-----------------------------------------------------CCCEEEECcc-cCEEhHhHhhCCCCC
Confidence 4 5666666543 555556778888888
Q ss_pred CeEeCCCCCCCCCCCcccCCCCCCCeeeCCCcccC
Q 003893 618 QTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLS 652 (788)
Q Consensus 618 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 652 (788)
+.+++.++... ...|....+|+.+.+..|.+.
T Consensus 360 ~~i~~~~~~~~---~~~~~~~~~L~~i~i~~~~~~ 391 (394)
T 4gt6_A 360 NNIEYSGSRSQ---WNAISTDSGLQNLPVAPGSID 391 (394)
T ss_dssp CEEEESSCHHH---HHTCBCCCCC-----------
T ss_pred CEEEECCceee---hhhhhccCCCCEEEeCCCCEE
Confidence 88888776543 145666777888777766543
No 145
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.40 E-value=1.3e-12 Score=121.12 Aligned_cols=91 Identities=22% Similarity=0.226 Sum_probs=83.7
Q ss_pred cCCCceEECCCCcccccCcccccccccCCeEeCCCCCCCCCCCcccCCCCCCCeeeCCCcccCccCchhhhcCCCCcEEe
Q 003893 590 PSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFS 669 (788)
Q Consensus 590 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~ 669 (788)
|+.|+.|+|++|++++..|..|..+++|+.|+|++|+|+++.+..|..+++|++|+|++|+|++..+..|..+++|+.|+
T Consensus 32 ~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~ 111 (174)
T 2r9u_A 32 PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIY 111 (174)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEE
T ss_pred CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEE
Confidence 34899999999999999899999999999999999999988777889999999999999999977776799999999999
Q ss_pred cccCcCcccCC
Q 003893 670 VAYNNLSGKIP 680 (788)
Q Consensus 670 l~~N~l~~~~~ 680 (788)
+++|++.+..+
T Consensus 112 L~~N~~~c~~~ 122 (174)
T 2r9u_A 112 LYNNPWDCECR 122 (174)
T ss_dssp CCSSCBCTTBG
T ss_pred eCCCCcccccc
Confidence 99999997654
No 146
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.35 E-value=6.3e-15 Score=140.75 Aligned_cols=154 Identities=22% Similarity=0.237 Sum_probs=123.7
Q ss_pred ccCCcCCcEEEccCccCcccCcc------cccCCCCCCEEEccCCcCCccCcccccccchhhhccCCCCCCCcccceeec
Q 003893 486 VDGLSQLSYLILAHNNLEGEVPI------QLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHERYNNGSSLQPFETSFVIM 559 (788)
Q Consensus 486 ~~~l~~L~~L~L~~n~l~~~~~~------~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 559 (788)
+.....++.++++++.+.+..|. .+..+++|++|++++|.+++. | .+..+.
T Consensus 14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~l-~-~~~~l~--------------------- 70 (198)
T 1ds9_A 14 FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKI-S-SLSGME--------------------- 70 (198)
T ss_dssp HHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESCC-C-CHHHHT---------------------
T ss_pred HHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCccc-c-ccccCC---------------------
Confidence 34456677777777777766665 899999999999999999873 4 444443
Q ss_pred CCcccCcccccccceEeeecCceecccCCccCCCceEECCCCcccccCcccccccccCCeEeCCCCCCCCCCCcccCCCC
Q 003893 560 GGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLR 639 (788)
Q Consensus 560 ~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 639 (788)
+|+.|++++|.++ .+|..+..+++|+.|++++|++++ +| .+..++
T Consensus 71 --------------------------------~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~ 115 (198)
T 1ds9_A 71 --------------------------------NLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GIEKLV 115 (198)
T ss_dssp --------------------------------TCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHH
T ss_pred --------------------------------CCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC-ccccCC
Confidence 8999999999998 567788888999999999999996 44 688899
Q ss_pred CCCeeeCCCcccCccCc-hhhhcCCCCcEEecccCcCcccCCCC----------ccccCCCCcCCcCCCCC
Q 003893 640 NIESLDLSYNKLSWKIP-YQLVELNTLAVFSVAYNNLSGKIPER----------AAQFATFNESSYEGNPF 699 (788)
Q Consensus 640 ~L~~L~Ls~N~l~~~~~-~~l~~l~~L~~L~l~~N~l~~~~~~~----------~~~~~~l~~~~~~~Np~ 699 (788)
+|++|++++|+++...+ ..+..+++|+.|++++|++++.+|.. +..++.++.++ +||.
T Consensus 116 ~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i 184 (198)
T 1ds9_A 116 NLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPV 184 (198)
T ss_dssp HSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGG
T ss_pred CCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--Cccc
Confidence 99999999999986433 57889999999999999999887653 55666776554 5554
No 147
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.32 E-value=2.8e-12 Score=134.47 Aligned_cols=109 Identities=17% Similarity=0.269 Sum_probs=85.4
Q ss_pred ceEECCCC-cccccCcccccccccCCeEeCCC-CCCCCCCCcccCCCCCCCeeeCCCcccCccCchhhhcCCCCcEEecc
Q 003893 594 SGLDLSCN-RLIGHIPPQIGNLTKIQTLNLSH-NNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVA 671 (788)
Q Consensus 594 ~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~ 671 (788)
..++++++ +++ .+|. +..+++|+.|+|++ |+|+++.+..|.++++|++|+|++|+|++..|..|..+++|+.|+|+
T Consensus 11 ~~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 88 (347)
T 2ifg_A 11 SGLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS 88 (347)
T ss_dssp SCEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred CEEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence 35677777 777 4666 88888888888885 88887777788888888888888888888888888888888888888
Q ss_pred cCcCcccCCCCccccCCCCcCCcCCCCCCCCCCC
Q 003893 672 YNNLSGKIPERAAQFATFNESSYEGNPFLCGPPL 705 (788)
Q Consensus 672 ~N~l~~~~~~~~~~~~~l~~~~~~~Np~~C~~~~ 705 (788)
+|+|++..+..+..+. ++.+++.+|++.|+|++
T Consensus 89 ~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c~c~l 121 (347)
T 2ifg_A 89 FNALESLSWKTVQGLS-LQELVLSGNPLHCSCAL 121 (347)
T ss_dssp SSCCSCCCSTTTCSCC-CCEEECCSSCCCCCGGG
T ss_pred CCccceeCHHHcccCC-ceEEEeeCCCccCCCcc
Confidence 8888876666555554 77888888888888763
No 148
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.21 E-value=2e-11 Score=127.84 Aligned_cols=112 Identities=16% Similarity=0.146 Sum_probs=91.1
Q ss_pred CCceEECCC-CcccccCcccccccccCCeEeCCCCCCCCCCCcccCCCCCCCeeeCCCcccCccCchhhhcCCCCcEEec
Q 003893 592 LLSGLDLSC-NRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSV 670 (788)
Q Consensus 592 ~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l 670 (788)
+|+.|+|++ |.+++..+..|.++++|+.|+|++|+|+++.|..|.++++|++|+|++|+|++..+..|..++ |+.|++
T Consensus 32 ~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l~l 110 (347)
T 2ifg_A 32 NLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQELVL 110 (347)
T ss_dssp CCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-CCEEEC
T ss_pred CeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCC-ceEEEe
Confidence 799999996 999998889999999999999999999999999999999999999999999977666666665 999999
Q ss_pred ccCcCcccCCC-CccccCCCCcCCcCCCCCCCCCC
Q 003893 671 AYNNLSGKIPE-RAAQFATFNESSYEGNPFLCGPP 704 (788)
Q Consensus 671 ~~N~l~~~~~~-~~~~~~~l~~~~~~~Np~~C~~~ 704 (788)
.+|++.+...- .+..+.......+..+.+.|..+
T Consensus 111 ~~N~~~c~c~l~~~~~~~~~~~~~l~~~~~~C~~~ 145 (347)
T 2ifg_A 111 SGNPLHCSCALRWLQRWEEEGLGGVPEQKLQCHGQ 145 (347)
T ss_dssp CSSCCCCCGGGHHHHHHHHTTCSSCGGGCCCCSSS
T ss_pred eCCCccCCCccHHHHHHHHhCcccccccCCCCCCC
Confidence 99999976431 12222223344455677788654
No 149
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.20 E-value=1.5e-09 Score=115.04 Aligned_cols=145 Identities=10% Similarity=0.080 Sum_probs=86.2
Q ss_pred cccccccccEEeCCCCccCCCCCccccCCcCCcEEEccCccCcccCcccccCCCCCCEEEccCCcCCccCcccccccchh
Q 003893 461 TFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLH 540 (788)
Q Consensus 461 ~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~ 540 (788)
.+..+..|+.+.+..+ +..+...+|.++..|+.+.+..+ ++.....+|.++.+|+.+.+..+ +..+...+|..+.
T Consensus 212 ~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~-- 286 (379)
T 4h09_A 212 GFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCS-- 286 (379)
T ss_dssp TTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCT--
T ss_pred ccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceecccccccccc--
Confidence 4555566666666543 22234445566666666666554 44344555666666666666433 3333344444433
Q ss_pred hhccCCCCCCCcccceeecCCcccCcccccccceEeeecCceecccCCccCCCceEECCCCcccccCcccccccccCCeE
Q 003893 541 ERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTL 620 (788)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 620 (788)
+|+.+++.++.++.+...+|.++.+|+.+
T Consensus 287 ---------------------------------------------------~L~~i~l~~~~i~~I~~~aF~~c~~L~~i 315 (379)
T 4h09_A 287 ---------------------------------------------------NLTKVVMDNSAIETLEPRVFMDCVKLSSV 315 (379)
T ss_dssp ---------------------------------------------------TCCEEEECCTTCCEECTTTTTTCTTCCEE
T ss_pred ---------------------------------------------------ccccccccccccceehhhhhcCCCCCCEE
Confidence 56666666666666666677777777777
Q ss_pred eCCCCCCCCCCCcccCCCCCCCeeeCCCcccCccCchhhhcCC
Q 003893 621 NLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELN 663 (788)
Q Consensus 621 ~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~ 663 (788)
+|..+ ++.+...+|.++++|+.+.+..+ ++.....+|....
T Consensus 316 ~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c~ 356 (379)
T 4h09_A 316 TLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEGSS 356 (379)
T ss_dssp ECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTSS
T ss_pred EcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhCCC
Confidence 77654 55555667777777877777654 5545555665543
No 150
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.19 E-value=8e-13 Score=138.62 Aligned_cols=165 Identities=20% Similarity=0.195 Sum_probs=102.5
Q ss_pred ccccEEeCCCCccCCCCCcccc-----CCcCCcEEEccCccCcccCcccc-cCCCCCCEEEccCCcCCccCcccccccch
Q 003893 466 LTLMILDLSYNHLNGNIPDRVD-----GLSQLSYLILAHNNLEGEVPIQL-CRLNQLQLLDLSNNNLHGHIPSCFDNTTL 539 (788)
Q Consensus 466 ~~L~~L~l~~n~i~~~~~~~~~-----~l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~~~~~~~ 539 (788)
+.|++|++++|.++......+. ..++|++|+|++|.++......+ ..+++|++|+|++|.++......+...-
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L- 150 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL- 150 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH-
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH-
Confidence 4577777777776543222222 22577777777777754322222 2345677888888877644333321110
Q ss_pred hhhccCCCCCCCcccceeecCCcccCcccccccceEeeecCceecccCCccCCCceEECCCCccccc----Ccccccccc
Q 003893 540 HERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGH----IPPQIGNLT 615 (788)
Q Consensus 540 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~----~~~~~~~l~ 615 (788)
....+.|++|+|++|.++.. ++..+..++
T Consensus 151 -----------------------------------------------~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~ 183 (372)
T 3un9_A 151 -----------------------------------------------LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNT 183 (372)
T ss_dssp -----------------------------------------------HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCS
T ss_pred -----------------------------------------------HhcCCccceeeCCCCCCChHHHHHHHHHHhcCC
Confidence 00012678888888887642 334446678
Q ss_pred cCCeEeCCCCCCCCC----CCcccCCCCCCCeeeCCCcccCcc----CchhhhcCCCCcEEecccCcCccc
Q 003893 616 KIQTLNLSHNNLAGP----IPSTFSNLRNIESLDLSYNKLSWK----IPYQLVELNTLAVFSVAYNNLSGK 678 (788)
Q Consensus 616 ~L~~L~Ls~N~l~~~----~~~~~~~l~~L~~L~Ls~N~l~~~----~~~~l~~l~~L~~L~l~~N~l~~~ 678 (788)
+|++|+|++|.|++. ++..+...++|++|+|++|.|+.. ++..+...++|++|++++|+++..
T Consensus 184 ~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~ 254 (372)
T 3un9_A 184 SVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSE 254 (372)
T ss_dssp SCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHH
T ss_pred CcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHH
Confidence 888888888887642 245566677888888888888753 334455568888888888887653
No 151
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.19 E-value=1.4e-09 Score=115.16 Aligned_cols=299 Identities=11% Similarity=0.050 Sum_probs=152.1
Q ss_pred CCCCcEEEeeCCcCCCCCCccccCCCCCCEEEccCCcCCCccchHHhhCCCCCcEEEccccccCccccccccCCCccCce
Q 003893 272 LSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWL 351 (788)
Q Consensus 272 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L 351 (788)
..+|+.+.+.. .++.+...+|.++.+|+.+++..+ ++ .++...|.++ +|+.+.+..+ ++.+...+|.+ .+|+.+
T Consensus 45 ~~~i~~v~ip~-~vt~Ig~~aF~~C~~L~~I~lp~~-v~-~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~-~~L~~i 118 (379)
T 4h09_A 45 RDRISEVRVNS-GITSIGEANFNSCYNMTKVTVAST-VT-SIGDGAFADT-KLQSYTGMER-VKKFGDYVFQG-TDLDDF 118 (379)
T ss_dssp GGGCSEEEECT-TEEEECTTTTTTCTTCCEEEECTT-CC-EECTTTTTTC-CCCEEEECTT-CCEECTTTTTT-CCCSEE
T ss_pred ccCCEEEEeCC-CccChHHHHhhCCCCCCEEEeCCc-ce-EechhhhcCC-CCceEECCce-eeEeccceecc-CCcccc
Confidence 45777777754 345455667777777777777643 55 6666666655 5666655432 33344444433 356666
Q ss_pred eccCccCcccCCccCCCCCCCcEEEcccCcCCCCCCccccCCCCccEEEccCCeeccCchhhhhcccCCcEEeccCCcCC
Q 003893 352 QLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNIS 431 (788)
Q Consensus 352 ~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~ 431 (788)
.+.++. .......|..+ +++.+.+..+ +.......+..+..++.+.+.. +...
T Consensus 119 ~lp~~~-~~i~~~~F~~~-~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~------------------------~~~~ 171 (379)
T 4h09_A 119 EFPGAT-TEIGNYIFYNS-SVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSS------------------------NNKN 171 (379)
T ss_dssp ECCTTC-CEECTTTTTTC-CCCEEEECTT-CCEECSCTTTTCTTCCEEEECT------------------------TCSS
T ss_pred cCCCcc-ccccccccccc-eeeeeeccce-eeccccchhccccccccccccc------------------------ccce
Confidence 665432 21333334333 3444433322 2222233344444444444433 2211
Q ss_pred CCCCCCCCCCcccEEEccCcccccccCcccccccccccEEeCCCCccCCCCCccccCCcCCcEEEccCccCcccCccccc
Q 003893 432 GSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLC 511 (788)
Q Consensus 432 ~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 511 (788)
......... ... ......+..+..+..+.+...... .....+..+.+|+.+.+..+ +......++.
T Consensus 172 ~~~~~~~~~--------~~~----~~~~~~~~~~~~~~~~~~~~~~~~-i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~ 237 (379)
T 4h09_A 172 YVAENYVLY--------NKN----KTILESYPAAKTGTEFTIPSTVKT-VTAYGFSYGKNLKKITITSG-VTTLGDGAFY 237 (379)
T ss_dssp EEEETTEEE--------ETT----SSEEEECCTTCCCSEEECCTTCCE-ECTTTTTTCSSCSEEECCTT-CCEECTTTTT
T ss_pred eecccceec--------ccc----cceeccccccccccccccccceeE-Eeecccccccccceeeeccc-eeEEcccccc
Confidence 000000000 000 000012334444555544433221 33345555666777666544 3334455666
Q ss_pred CCCCCCEEEccCCcCCccCcccccccchhhhccCCCCCCCcccceeecCCcccCcccccccceEeeecCceecccCCccC
Q 003893 512 RLNQLQLLDLSNNNLHGHIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPS 591 (788)
Q Consensus 512 ~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~ 591 (788)
++..|+.+.+..+ ++.+...+|....
T Consensus 238 ~~~~L~~i~lp~~-v~~I~~~aF~~~~----------------------------------------------------- 263 (379)
T 4h09_A 238 GMKALDEIAIPKN-VTSIGSFLLQNCT----------------------------------------------------- 263 (379)
T ss_dssp TCSSCCEEEECTT-CCEECTTTTTTCT-----------------------------------------------------
T ss_pred CCccceEEEcCCC-ccEeCccccceee-----------------------------------------------------
Confidence 6777777776554 4444444444333
Q ss_pred CCceEECCCCcccccCcccccccccCCeEeCCCCCCCCCCCcccCCCCCCCeeeCCCcccCccCchhhhcCCCCcEEecc
Q 003893 592 LLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVA 671 (788)
Q Consensus 592 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~ 671 (788)
.|+.+++..+ +......+|.++++|+.+.+.++.++.+...+|.++++|+.++|..+ ++.....+|.++.+|+.+.+.
T Consensus 264 ~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip 341 (379)
T 4h09_A 264 ALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYP 341 (379)
T ss_dssp TCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCC
T ss_pred hhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEEC
Confidence 4555555432 44344556677777777777777666566667777777777777543 554555667777777776665
Q ss_pred cC
Q 003893 672 YN 673 (788)
Q Consensus 672 ~N 673 (788)
.+
T Consensus 342 ~~ 343 (379)
T 4h09_A 342 KS 343 (379)
T ss_dssp TT
T ss_pred Cc
Confidence 43
No 152
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.09 E-value=4e-12 Score=133.30 Aligned_cols=135 Identities=19% Similarity=0.145 Sum_probs=65.8
Q ss_pred CCCCEEEccCCcCCCccchHHhhCCCCCcEEEccccccCccccccc-----cCCCccCceeccCccCccc----CCccCC
Q 003893 297 NFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRN-----FNLTNLIWLQLEGNHFVGE----IPQSLS 367 (788)
Q Consensus 297 ~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~-----~~l~~L~~L~l~~n~~~~~----~~~~~~ 367 (788)
++|++|++++|.+++.....+...+++|++|++++|.++......+ ...++|++|++++|.+... ++..+.
T Consensus 101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~ 180 (372)
T 3un9_A 101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLA 180 (372)
T ss_dssp SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHH
T ss_pred CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHh
Confidence 3445555555544422222222233445555555554443222222 1234555555555555421 122234
Q ss_pred CCCCCcEEEcccCcCCCCC----CccccCCCCccEEEccCCeeccCc----hhhhhcccCCcEEeccCCcCC
Q 003893 368 KCSSLQGLFLSNNSLSGKI----PRWLGNLTVLRHIIMPKNHIEGPI----PLEFCQLRILQILDISDNNIS 431 (788)
Q Consensus 368 ~l~~L~~L~l~~n~l~~~~----~~~l~~l~~L~~L~l~~n~~~~~~----~~~~~~l~~L~~L~l~~n~~~ 431 (788)
.+++|++|++++|.+++.. +..+...++|++|++++|.++... ...+...++|++|++++|.+.
T Consensus 181 ~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 181 GNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELS 252 (372)
T ss_dssp TCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCC
T ss_pred cCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCC
Confidence 4556666666666554321 233445556666666666665432 233445577777777777664
No 153
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.73 E-value=8e-09 Score=107.10 Aligned_cols=162 Identities=15% Similarity=0.114 Sum_probs=93.8
Q ss_pred cccccccccEEeCCCCccCCCCCccccCCcCCcEEEccCccCcccCccccc--CCCCCCEEEccC--CcCCccC-ccccc
Q 003893 461 TFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLC--RLNQLQLLDLSN--NNLHGHI-PSCFD 535 (788)
Q Consensus 461 ~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~--~l~~L~~L~L~~--n~l~~~~-~~~~~ 535 (788)
.+..+|+|+.|++++|.-. ..+. +. +++|++|++..|.+.......+. .+|+|++|+|+. |...+.. ...+.
T Consensus 167 ll~~~P~L~~L~L~g~~~l-~l~~-~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~ 243 (362)
T 2ra8_A 167 VLDAMPLLNNLKIKGTNNL-SIGK-KP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFR 243 (362)
T ss_dssp HHHTCTTCCEEEEECCBTC-BCCS-CB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTG
T ss_pred HHhcCCCCcEEEEeCCCCc-eecc-cc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHH
Confidence 4566788888888776311 1222 33 67889999888887644333343 688899998853 2211110 00000
Q ss_pred ccchhhhccCCCCCCCcccceeecCCcccCcccccccceEeeecCceecccCCccCCCceEECCCCcccccCccccc---
Q 003893 536 NTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIG--- 612 (788)
Q Consensus 536 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~--- 612 (788)
. .....-.++|+.|+|++|.+....+..+.
T Consensus 244 ~-----------------------------------------------~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~ 276 (362)
T 2ra8_A 244 P-----------------------------------------------LFSKDRFPNLKWLGIVDAEEQNVVVEMFLESD 276 (362)
T ss_dssp G-----------------------------------------------GSCTTTCTTCCEEEEESCTTHHHHHHHHHHCS
T ss_pred H-----------------------------------------------HHhcCCCCCcCEEeCCCCCCchHHHHHHHhCc
Confidence 0 00001124788888888887643333332
Q ss_pred ccccCCeEeCCCCCCCCC----CCcccCCCCCCCeeeCCCcccCccCchhhhc-CCCCcEEecccCc
Q 003893 613 NLTKIQTLNLSHNNLAGP----IPSTFSNLRNIESLDLSYNKLSWKIPYQLVE-LNTLAVFSVAYNN 674 (788)
Q Consensus 613 ~l~~L~~L~Ls~N~l~~~----~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~-l~~L~~L~l~~N~ 674 (788)
.+++|++|+|+.|.+.+. ++..+..+++|+.|++++|.|+...-..+.. + ...+++++++
T Consensus 277 ~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 277 ILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSL--PMKIDVSDSQ 341 (362)
T ss_dssp SGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHHC--CSEEECCSBC
T ss_pred cCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHHc--CCEEEecCCc
Confidence 467888888888877643 2333345678888888888777544444443 2 3456666665
No 154
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.57 E-value=4.3e-08 Score=101.62 Aligned_cols=207 Identities=16% Similarity=0.172 Sum_probs=111.6
Q ss_pred CCccEEEcCCcccccCc-c-------chhHhhhcCCCCCEEeCCCCCCCC--c----ccCCCCccCCCCCCCEEEcCCCC
Q 003893 19 KSLKELYMDDARIALNT-S-------FLQIIGESMPSIQYLSLSNSSVSN--N----SRTLDQGLCPLVHLQELHMADND 84 (788)
Q Consensus 19 ~~L~~L~L~~~~~~~~~-~-------~~~~~~~~l~~L~~L~L~~~~l~~--~----~~~l~~~l~~l~~L~~L~L~~n~ 84 (788)
..++.|.+.. +.+.+ . ++.++.. +++|+.|.+.+..... . ...+...+..+++|++|+|++|.
T Consensus 107 ~~v~~L~lg~--~~~~~~~~~~~~~~L~~s~~~-l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~ 183 (362)
T 2ra8_A 107 PSLKQITIGX--WGYEGEDCSDIADGIVENKEK-FAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTN 183 (362)
T ss_dssp GGCSEEEECC--CCSSSCCSHHHHHHHHTTHHH-HTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCB
T ss_pred hhcceEEEcc--cccCCCcHHHHHHHHHHhhhh-cchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCC
Confidence 4566777775 33331 1 1233444 7888888886543211 0 00122334667888888888773
Q ss_pred CCCCccHhhhcCCCCCEEeCCCCcCcCCCChhhhc--CCCCCCEEEcCC--CcccCccCc----ccc--CCCCCccEEEc
Q 003893 85 LRGSLPWCLANMTSLRILDVSSNQLIGSISSSPLI--HLTSIEDLILSD--NHFQIPISL----EPL--FNHSRLKIFDA 154 (788)
Q Consensus 85 i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~--~l~~L~~L~l~~--n~~~~~~~~----~~l--~~l~~L~~L~l 154 (788)
-. .++. + .+++|++|++..|.+...... .+. .+++|++|+|+. +...+.... ..+ ..+++|+.|++
T Consensus 184 ~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l~-~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L 259 (362)
T 2ra8_A 184 NL-SIGK-K-PRPNLKSLEIISGGLPDSVVE-DILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGI 259 (362)
T ss_dssp TC-BCCS-C-BCTTCSEEEEECSBCCHHHHH-HHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEE
T ss_pred Cc-eecc-c-cCCCCcEEEEecCCCChHHHH-HHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeC
Confidence 22 2222 3 378888888887765432211 232 688888888753 221111110 111 24688888888
Q ss_pred cCCccchhhhccccCCCCcccccEEEccCCCcCCccCCccccCCCCCcEEEecCCCCCccCchHHh---hcCCCCCEEEc
Q 003893 155 ENNEINAEIIESHSLTTPNFQLQSLLLSSGYRDGITFPKFLYNQHDLEYVRLSHIKMNEEFPNWLL---ENNTKLRQLSL 231 (788)
Q Consensus 155 ~~n~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~---~~l~~L~~L~l 231 (788)
.+|.+.+........ ...+++|++|+++.|.+.+..+..+. ..+++|+.|++
T Consensus 260 ~~~~i~~~~~~~la~-------------------------a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L 314 (362)
T 2ra8_A 260 VDAEEQNVVVEMFLE-------------------------SDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINM 314 (362)
T ss_dssp ESCTTHHHHHHHHHH-------------------------CSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEEC
T ss_pred CCCCCchHHHHHHHh-------------------------CccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEEC
Confidence 888776433221110 01245677777777777654333332 34677888888
Q ss_pred cCCcccCcCccCccC-CCCcCEEEccCCc
Q 003893 232 VNDSLVGPFRLPIHS-HKQLRLLDVSKNN 259 (788)
Q Consensus 232 ~~~~~~~~~~~~~~~-~~~L~~L~l~~n~ 259 (788)
++|.+++.....+.. + ...++++.+.
T Consensus 315 ~~n~i~d~~~~~l~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 315 KYNYLSDEMKKELQKSL--PMKIDVSDSQ 341 (362)
T ss_dssp CSBBCCHHHHHHHHHHC--CSEEECCSBC
T ss_pred CCCcCCHHHHHHHHHHc--CCEEEecCCc
Confidence 777665433222221 1 2456776654
No 155
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.40 E-value=3.7e-08 Score=92.01 Aligned_cols=124 Identities=16% Similarity=0.196 Sum_probs=86.6
Q ss_pred chhHhhhcCCCCCEEeCCCC-CCCCc-ccCCCCccCCCCCCCEEEcCCCCCCCCc----cHhhhcCCCCCEEeCCCCcCc
Q 003893 37 FLQIIGESMPSIQYLSLSNS-SVSNN-SRTLDQGLCPLVHLQELHMADNDLRGSL----PWCLANMTSLRILDVSSNQLI 110 (788)
Q Consensus 37 ~~~~~~~~l~~L~~L~L~~~-~l~~~-~~~l~~~l~~l~~L~~L~L~~n~i~~~~----~~~~~~l~~L~~L~Ls~n~l~ 110 (788)
+...+.. .++|++|+|++| .+... ...+...+...++|++|+|++|.+.+.. ...+...++|++|+|++|.+.
T Consensus 28 l~~~l~~-~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~ 106 (185)
T 1io0_A 28 LKRIQNN-DPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFIS 106 (185)
T ss_dssp HHHHHTT-CTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCC
T ss_pred HHHHHhc-CCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCC
Confidence 3445555 788999999998 77543 1222245677888999999999987643 444566788999999999876
Q ss_pred CC----CChhhhcCCCCCCEEEc--CCCcccCccC---ccccCCCCCccEEEccCCccchh
Q 003893 111 GS----ISSSPLIHLTSIEDLIL--SDNHFQIPIS---LEPLFNHSRLKIFDAENNEINAE 162 (788)
Q Consensus 111 ~~----~~~~~l~~l~~L~~L~l--~~n~~~~~~~---~~~l~~l~~L~~L~l~~n~~~~~ 162 (788)
+. +.. .+...+.|++|++ ++|.+..... ...+...++|+.|++++|.+...
T Consensus 107 ~~g~~~l~~-~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~~~ 166 (185)
T 1io0_A 107 GSGILALVE-ALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQGPR 166 (185)
T ss_dssp HHHHHHHHH-GGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHHHH
T ss_pred HHHHHHHHH-HHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCChH
Confidence 42 122 4566788999999 7888763211 12445568899999999887543
No 156
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.33 E-value=1.1e-07 Score=88.81 Aligned_cols=119 Identities=18% Similarity=0.127 Sum_probs=88.7
Q ss_pred CCCCCCCccEEEcCCccc-ccCcc----chhHhhhcCCCCCEEeCCCCCCCCcc-cCCCCccCCCCCCCEEEcCCCCCCC
Q 003893 14 GFPHFKSLKELYMDDARI-ALNTS----FLQIIGESMPSIQYLSLSNSSVSNNS-RTLDQGLCPLVHLQELHMADNDLRG 87 (788)
Q Consensus 14 ~l~~l~~L~~L~L~~~~~-~~~~~----~~~~~~~~l~~L~~L~L~~~~l~~~~-~~l~~~l~~l~~L~~L~L~~n~i~~ 87 (788)
.+...++|++|+|++ + .+.+. +...+.. .++|++|+|++|.+.... ..+.+.+...++|++|+|++|.+.+
T Consensus 31 ~l~~~~~L~~L~L~~--n~~i~~~g~~~l~~~L~~-~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~ 107 (185)
T 1io0_A 31 IQNNDPDLEEVNLNN--IMNIPVPTLKACAEALKT-NTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISG 107 (185)
T ss_dssp HHTTCTTCCEEECTT--CTTCCHHHHHHHHHHHTT-CCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCH
T ss_pred HHhcCCCCCEEEecC--CCCCCHHHHHHHHHHHHh-CCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCH
Confidence 466789999999999 6 55443 3445555 789999999999986532 1122445667899999999999987
Q ss_pred C----ccHhhhcCCCCCEEeC--CCCcCcCCCCh---hhhcCCCCCCEEEcCCCccc
Q 003893 88 S----LPWCLANMTSLRILDV--SSNQLIGSISS---SPLIHLTSIEDLILSDNHFQ 135 (788)
Q Consensus 88 ~----~~~~~~~l~~L~~L~L--s~n~l~~~~~~---~~l~~l~~L~~L~l~~n~~~ 135 (788)
. +...+...++|++|+| ++|.+...... ..+...+.|++|++++|.+.
T Consensus 108 ~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 108 SGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 5 3556678899999999 88987643211 14556789999999999875
No 157
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.28 E-value=2.1e-07 Score=91.14 Aligned_cols=39 Identities=26% Similarity=0.412 Sum_probs=17.6
Q ss_pred CCCCCEEEcCCCCCCCC--ccHhhhcCCCCCEEeCCCCcCc
Q 003893 72 LVHLQELHMADNDLRGS--LPWCLANMTSLRILDVSSNQLI 110 (788)
Q Consensus 72 l~~L~~L~L~~n~i~~~--~~~~~~~l~~L~~L~Ls~n~l~ 110 (788)
+++|++|+|++|++++. +|..+..+++|++|+|++|.+.
T Consensus 169 l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~ 209 (267)
T 3rw6_A 169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELK 209 (267)
T ss_dssp CTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCC
T ss_pred CCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccC
Confidence 44444444444444431 2333444444555555444444
No 158
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.14 E-value=2e-06 Score=84.22 Aligned_cols=66 Identities=27% Similarity=0.338 Sum_probs=32.9
Q ss_pred ccccCCeEeCCCCCCCCC--CCcccCCCCCCCeeeCCCcccCccCchhhhcCC--CCcEEecccCcCcccCC
Q 003893 613 NLTKIQTLNLSHNNLAGP--IPSTFSNLRNIESLDLSYNKLSWKIPYQLVELN--TLAVFSVAYNNLSGKIP 680 (788)
Q Consensus 613 ~l~~L~~L~Ls~N~l~~~--~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~--~L~~L~l~~N~l~~~~~ 680 (788)
++++|+.|+|++|+|+++ +|..+..+++|+.|+|++|+|++. ..+..+. +|+.|++++|++++..|
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~ 237 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFR 237 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCS
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccC
Confidence 445555555555555542 223344555555555555555533 2222222 55555555555555443
No 159
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.04 E-value=7.8e-07 Score=80.38 Aligned_cols=84 Identities=10% Similarity=0.065 Sum_probs=39.4
Q ss_pred CCCCEEEcCCCCCCCCccHhhhcCCCCCEEeCCCCc-CcCCCChhhhcCC----CCCCEEEcCCCc-ccCccCccccCCC
Q 003893 73 VHLQELHMADNDLRGSLPWCLANMTSLRILDVSSNQ-LIGSISSSPLIHL----TSIEDLILSDNH-FQIPISLEPLFNH 146 (788)
Q Consensus 73 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~l~~l----~~L~~L~l~~n~-~~~~~~~~~l~~l 146 (788)
.+|++||+++|.+++..-..+.++++|++|+|++|. +++.. ...+..+ ++|++|++++|. ++ ...+..+..+
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~g-L~~L~~~~~~~~~L~~L~Ls~C~~IT-D~Gl~~L~~~ 138 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGC-LERLSQLENLQKSMLEMEIISCGNVT-DKGIIALHHF 138 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHH-HHHHHTCHHHHHHCCEEEEESCTTCC-HHHHHHGGGC
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHH-HHHHHhcccccCCCCEEEcCCCCcCC-HHHHHHHhcC
Confidence 345555555555555444445555555555555553 22111 1122332 245555555553 33 2222334455
Q ss_pred CCccEEEccCCc
Q 003893 147 SRLKIFDAENNE 158 (788)
Q Consensus 147 ~~L~~L~l~~n~ 158 (788)
++|+.|+++++.
T Consensus 139 ~~L~~L~L~~c~ 150 (176)
T 3e4g_A 139 RNLKYLFLSDLP 150 (176)
T ss_dssp TTCCEEEEESCT
T ss_pred CCCCEEECCCCC
Confidence 566666665553
No 160
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.01 E-value=2.2e-06 Score=77.37 Aligned_cols=84 Identities=15% Similarity=0.163 Sum_probs=67.3
Q ss_pred CCCCEEeCCCCCCCCcccCCCCccCCCCCCCEEEcCCCC-CCCCccHhhhcC----CCCCEEeCCCCc-CcCCCChhhhc
Q 003893 46 PSIQYLSLSNSSVSNNSRTLDQGLCPLVHLQELHMADND-LRGSLPWCLANM----TSLRILDVSSNQ-LIGSISSSPLI 119 (788)
Q Consensus 46 ~~L~~L~L~~~~l~~~~~~l~~~l~~l~~L~~L~L~~n~-i~~~~~~~~~~l----~~L~~L~Ls~n~-l~~~~~~~~l~ 119 (788)
..|+.||+++|.++...- ..+..+++|++|+|++|. +++..-..++.+ ++|++|+|++|. +++.-- ..+.
T Consensus 61 ~~L~~LDLs~~~Itd~GL---~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl-~~L~ 136 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGF---DHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGI-IALH 136 (176)
T ss_dssp CCEEEEEEESCCCCGGGG---GGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHH-HHGG
T ss_pred ceEeEEeCcCCCccHHHH---HHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHH-HHHh
Confidence 469999999999876543 467899999999999995 787666667764 479999999985 553322 2577
Q ss_pred CCCCCCEEEcCCCc
Q 003893 120 HLTSIEDLILSDNH 133 (788)
Q Consensus 120 ~l~~L~~L~l~~n~ 133 (788)
++++|++|++++|.
T Consensus 137 ~~~~L~~L~L~~c~ 150 (176)
T 3e4g_A 137 HFRNLKYLFLSDLP 150 (176)
T ss_dssp GCTTCCEEEEESCT
T ss_pred cCCCCCEEECCCCC
Confidence 89999999999986
No 161
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.97 E-value=8.9e-06 Score=70.24 Aligned_cols=42 Identities=19% Similarity=0.309 Sum_probs=24.5
Q ss_pred CCcEEecccCcCcccCCCCccccCCCCcCCcCCCCCCCCCCC
Q 003893 664 TLAVFSVAYNNLSGKIPERAAQFATFNESSYEGNPFLCGPPL 705 (788)
Q Consensus 664 ~L~~L~l~~N~l~~~~~~~~~~~~~l~~~~~~~Np~~C~~~~ 705 (788)
+|+.|+|++|.|+...+..+..+..++.+++.+|||.|+|.+
T Consensus 32 ~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~CdC~l 73 (130)
T 3rfe_A 32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRCDCRL 73 (130)
T ss_dssp TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBCSGGG
T ss_pred CCCEEECCCCcCCccChhhhhhccccCEEEecCCCeeccCcc
Confidence 344555555555544444445555555666777778887764
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.09 E-value=0.00022 Score=65.62 Aligned_cols=63 Identities=13% Similarity=0.156 Sum_probs=30.1
Q ss_pred cccccCCeEeCCCCCCCCC----CCcccCCCCCCCeeeCCCc---ccCc----cCchhhhcCCCCcEEecccCc
Q 003893 612 GNLTKIQTLNLSHNNLAGP----IPSTFSNLRNIESLDLSYN---KLSW----KIPYQLVELNTLAVFSVAYNN 674 (788)
Q Consensus 612 ~~l~~L~~L~Ls~N~l~~~----~~~~~~~l~~L~~L~Ls~N---~l~~----~~~~~l~~l~~L~~L~l~~N~ 674 (788)
..-+.|++|+|++|.|... +-+++..-+.|++|+|++| .+.. .+...+...+.|+.|+++.|.
T Consensus 95 ~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~ 168 (197)
T 1pgv_A 95 ETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS 168 (197)
T ss_dssp HHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred hcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCC
Confidence 3444555555555555421 1123344455666666544 2221 123344555666666665553
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.94 E-value=0.0016 Score=55.87 Aligned_cols=55 Identities=22% Similarity=0.276 Sum_probs=27.4
Q ss_pred eEECCCCccc-ccCcccccccccCCeEeCCCCCCCCCCCcccCCCCCCCeeeCCCccc
Q 003893 595 GLDLSCNRLI-GHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKL 651 (788)
Q Consensus 595 ~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l 651 (788)
.++.++++++ ..+|..+. ++|+.|+|++|+|+.+.+..|..+++|++|+|++|++
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 4555555554 23333222 2455555555555544444555555555555555544
No 164
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.85 E-value=0.00028 Score=64.98 Aligned_cols=61 Identities=10% Similarity=0.114 Sum_probs=31.4
Q ss_pred CCceEECCCCccccc----CcccccccccCCeEeCCCCCC---CC----CCCcccCCCCCCCeeeCCCcccC
Q 003893 592 LLSGLDLSCNRLIGH----IPPQIGNLTKIQTLNLSHNNL---AG----PIPSTFSNLRNIESLDLSYNKLS 652 (788)
Q Consensus 592 ~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~Ls~N~l---~~----~~~~~~~~l~~L~~L~Ls~N~l~ 652 (788)
.|++|+|++|.|+.. +.+.+..-+.|++|+|++|.. .. .+.+.+..-+.|++|+++.|.+.
T Consensus 99 tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~g 170 (197)
T 1pgv_A 99 SLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASME 170 (197)
T ss_dssp SCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCHH
T ss_pred ccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCcc
Confidence 455555555555421 223344455666777665432 21 11233444567777777766553
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=63.61 E-value=6.7 Score=31.17 Aligned_cols=45 Identities=24% Similarity=0.239 Sum_probs=24.2
Q ss_pred CCCCccHhhhcCCCCCEEeCCCCcCcCCCChhhhcCCCCCCEEEcCC
Q 003893 85 LRGSLPWCLANMTSLRILDVSSNQLIGSISSSPLIHLTSIEDLILSD 131 (788)
Q Consensus 85 i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~l~~ 131 (788)
++.+...+|.+|++|+.+.+..+ ++ .|...+|.+|.+|+.+.+..
T Consensus 8 vt~I~~~aF~~c~~L~~i~iP~~-v~-~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 8 VVGMDKSLFAGNTVIREITVQPN-IG-LLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CCSSCSCTTTTCTTCCCEEECTT-SS-CCCTTSSTTCTTCCCEEECC
T ss_pred cCEecHHHhcCCCCCcEEEcCCc-hh-eEcHHHHhccCCccEEEEcC
Confidence 34444455666666666666554 12 34444566666666666554
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=63.33 E-value=16 Score=28.98 Aligned_cols=45 Identities=20% Similarity=0.115 Sum_probs=23.6
Q ss_pred cCccccccccCCCccCceeccCccCcccCCccCCCCCCCcEEEccc
Q 003893 334 LEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSN 379 (788)
Q Consensus 334 i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~ 379 (788)
++.+...+|.++.+|+.+.+..+ ++.+...+|.+|.+|+.+.+..
T Consensus 8 vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 8 VVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred cCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 34444455555555555555543 2334455566666666665554
No 167
>2l9u_A Receptor tyrosine-protein kinase ERBB-3; transmenbrane dimer, membrane protein, EGFR; NMR {Homo sapiens}
Probab=49.14 E-value=17 Score=21.59 Aligned_cols=24 Identities=8% Similarity=0.122 Sum_probs=13.3
Q ss_pred hhhhhhhhHHHHHHHhhhhhhhhh
Q 003893 735 ITFTTSYVIVIFGIVAVLYVNARW 758 (788)
Q Consensus 735 ~~~~~~~~~~~~~~~~~~~~~~~~ 758 (788)
+.++++.++++.++...+++++..
T Consensus 10 lt~i~gl~vif~~lg~tflywrgr 33 (40)
T 2l9u_A 10 LTVIAGLVVIFMMLGGTFLYWRGR 33 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCceeEEEccc
Confidence 445566666666665555544433
No 168
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=33.88 E-value=25 Score=21.99 Aligned_cols=15 Identities=0% Similarity=-0.002 Sum_probs=6.5
Q ss_pred hhhhhhhhHHHHHHH
Q 003893 735 ITFTTSYVIVIFGIV 749 (788)
Q Consensus 735 ~~~~~~~~~~~~~~~ 749 (788)
..++++.++.+.+++
T Consensus 14 AGiVvG~v~gv~li~ 28 (38)
T 2k1k_A 14 VAVIFGLLLGAALLL 28 (38)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred eeeehHHHHHHHHHH
Confidence 444444444443333
Done!