Citrus Sinensis ID: 003894


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------79
MKEVDKRKINNKQPRRSAKTERTEQKQRQENGGKNLNAKQIETKASITRRDSGNVVSDTNAGTEASEVYENGVTKYVDDLNSFEEVPLDLKSNGTEELTDYEKQGKQGKEEVSDSETVKDSVSSQEDSLSVEGEKVKKSSTVPKIKNSSVNDSPGSRVRSGREMKGFPNTPKKPTKPDRGSLSINTKSSSGKSCNEMKVPTKPSSETSEGVDDKPIEEMKEIDLLDETSNGAQSVASDNETVDTEESGEHIDEANLNQKIEEMELRIEKLEEELRDVAALEISLYSVVPEHGSSAHKVHSPARRLSRIYIHACKHWTQNKRATIAKNSVSGLVLVAKSCGNDVSRLTFWLSNTIVLREIICQAFGNSHNSTPVTRISESNGFSKKSEGKSQSLKWKGGSGNKQLNGHLQFDEDWQEMGTFIAALQKVESWIFSRIVESVWWQALTPHMQSPVGSTTKPIGKLLGPALGDQQQGSFSINLWKNAFQDALQKLCPVRAGGHECGCLPVLGRMVMEQCVARLDVAMFNAILRESANEIPTDPVSDPILDSKVLPIPAGDLSFGSGAQLKNSVGNWSRWLTDMFGMDTDDSPKEDQDFTEDDDGQDGVGEPKSFILLNSFSDLLMLPKDMLMDRSIRQEVCPLISLSLVKRILCNFTPDEFCPDAVPGAVLEALNAESIIERRLSGDSARSFPYTAAPVEYNPPSSSDVAEKVAEAGGKSHLLRNVSSVQRKGYTSDDELEELDSPLSSIIDKLPPSPSIIATENGNGKHKNHTYYTGSNARYELLREVWSS
ccccccccccccccccccHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHccccccccccccccccccccccccccccccHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHccccHHHHHHHHHHHcccEEEEEEccccccccHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccHHHcccHHHHHHHHHHHcccccccccccccccccccccccccccccHHHHHHHHHHcccccccccccHHHHHHHcccccHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHccccccccccccccccccccccHHHHHHHHHHccccccccccccHHHcccccccHHHHccccccHHHcccccccccccccccccccccccccccccHHHHHHHHHHHcc
cccEcccccccccccEEEcccccccccccccccccccHcccccccccccccccccccccccccccccHEccEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHEEEEHHccccHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccEHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccHHcccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccHHHHHHHHHHHcccHHHcccHHHHHHHcccccHHHHHHHHHcccccccccccccHHHHHHHHcHHHHHHHccccccccccccccccEcccccHHHHHHHHHccccccHcccccHHHHHcccccHHHHHHccccHHHHHcccccccccccccccccccccccccccHHHHHHHHHHHHcc
mkevdkrkinnkqprrsakteRTEQKQRqenggknlnaKQIETKAsitrrdsgnvvsdtnagteaseVYENGVTKYvddlnsfeevpldlksngteelTDYEKqgkqgkeevsdsetvkdsvssqedslsvegekvkksstvpkiknssvndspgsrvrsgremkgfpntpkkptkpdrgslsintksssgkscnemkvptkpssetsegvddkpieemkeidlldetsngaqsvasdnetvdteesgehideaNLNQKIEEMELRIEKLEEELRDVAALEISLYSvvpehgssahkvhsparrLSRIYIHACKHWTQNKRATIAKNSVSGLVLVAKScgndvsrlTFWLSNTIVLREIICQafgnshnstpvtrisesngfskksegksqslkwkggsgnkqlnghlqfDEDWQEMGTFIAALQKVESWIFSRIVESVWWQaltphmqspvgsttkpigkllgpalgdqqqgsfSINLWKNAFQDALQKlcpvragghecgclpvlgRMVMEQCVARLDVAMFNAILREsaneiptdpvsdpildskvlpipagdlsfgsgaqlknsvgNWSRWLTdmfgmdtddspkedqdftedddgqdgvgepksFILLNSFsdllmlpkdmlmdrsIRQEVCPLISLSLVKRILcnftpdefcpdavpgAVLEALNAESIIERrlsgdsarsfpytaapveynppsssdVAEKVAEAGGKSHLLRNVSsvqrkgytsddeleeldsplssiidklppspsiiatengngkhknhtyytgsNARYELLREVWSS
mkevdkrkinnkqprrsakterteqkqrqenggknlnakqietkasitrrdsgnvvsdtnagteasevyenGVTKYVDDLNSFEEVPLDLKSNGTEELTDyekqgkqgkeevsdsetvkdsvssqedslsvegekvkksstvpkiknssvndspgsrvrsgremkgfpntpkkptkpdrgslsintksssgkscnemkvptkpssetsegvddkpiEEMKEIdlldetsngaqsvasdnetvdteesgehideanlnqkIEEMELRIEKLEEELRDVAALEISLYSvvpehgssahkvhsparRLSRIYIHACKHWTQNKRATIAKNSVSGLVLVAKSCGNDVSRLTFWLSNTIVLREIICQAfgnshnstpvtrisesngfskksegksqslkwkggsgnkQLNGHLQFDEDWQEMGTFIAALQKVESWIFSRIVESVWWQALTPHMQSPVGSTTKPIGKLLGPALGDQQQGSFSINLWKNAFQDALQKLCPVRAGGHECGCLPVLGRMVMEQCVARLDVAMFNAILRESaneiptdpvsDPILDSKVLPIPAGDLSFGSGAQLKNSVGNWSRWLTDMFGMDTDDSPKEDQDFTEDDDGQDGVGEPKSFILLNSFSDLLMLPKDMLMDRSIRQEVCPLISLSLVKRILCNFTPDEFCPDAVPGAVLEALNAESIIERRLSGDSARSFPYTAAPVEYNPPSSSDVAEKVAEAGgkshllrnvssvqrkgytsddeLEELDSPLSSIIDKLPPSPSIiatengngkhknhtyytgsnaryELLREVWSS
MKEVDKRKINNKQPRRSAKTERTEQKQRQENGGKNLNAKQIETKASITRRDSGNVVSDTNAGTEASEVYENGVTKYVDDLNSFEEVPLDLKSNGTEELTDYEKQGKQGKEEVSDSETVKDSVSSQEDSLSVEGEKVKKSSTVPKIKNSSVNDSPGSRVRSGREMKGFPNTPKKPTKPDRGSLSINTKSSSGKSCNEMKVPTKPSSETSEGVDDKPIEEMKEIDLLDETSNGAQSVASDNETVDTEESGEHIDEANLNQkieemelriekleeelrDVAALEISLYSVVPEHGSSAHKVHSPARRLSRIYIHACKHWTQNKRATIAKNSVSGLVLVAKSCGNDVSRLTFWLSNTIVLREIICQAFGNSHNSTPVTRISESNGFSKKSEGKSQSLKWKGGSGNKQLNGHLQFDEDWQEMGTFIAALQKVESWIFSRIVESVWWQALTPHMQSPVGSTTKPIGKLLGPALGDQQQGSFSINLWKNAFQDALQKLCPVRAGGHECGCLPVLGRMVMEQCVARLDVAMFNAILRESANEIPTDPVSDPILDSKVLPIPAGDLSFGSGAQLKNSVGNWSRWLTDMFGMDTDDSPKedqdftedddgqdgVGEPKSFILLNSFSdllmlpkdmlmdRSIRQEVCPLISLSLVKRILCNFTPDEFCPDAVPGAVLEALNAESIIERRLSGDSARSFPYTAAPVEYNPPSSSDVAEKVAEAGGKSHLLRNVSSVQRKGYTSDDELEELDSPLSSIIDKLPPSPSIIATENGNGKHKNHTYYTGSNARYELLREVWSS
********************************************************************YENGVTKYVDDLN***********************************************************************************************************************************************************************************************ELRDVAALEISLYSVVP************ARRLSRIYIHACKHWTQNKRATIAKNSVSGLVLVAKSCGNDVSRLTFWLSNTIVLREIICQAFGN***************************************GHLQFDEDWQEMGTFIAALQKVESWIFSRIVESVWWQALTPHM**********IGKLLGPALGDQQQGSFSINLWKNAFQDALQKLCPVRAGGHECGCLPVLGRMVMEQCVARLDVAMFNAILRESAN*I********ILDSKVLPIPAGDLSFGSGAQLKNSVGNWSRWLTDMFG***************************SFILLNSFSDLLMLPKDMLMDRSIRQEVCPLISLSLVKRILCNFTPDEFCPDAVPGAVLEALNAESIIE********************************************************************************************TYYTGSNARYELLR*****
**************************************************************************************************************************************************************************************************************************************************************************************ALEISLYSVVPE********HSPARRLSRIYIHACKHW**********NSVSGLVLVAKSCGNDVSRLTFWLSNTIVLREIICQ***************************************************WQEMGTFIAALQKVESWIFSRIVESVWWQALTP*************************QGSFSINLWKNAFQDALQKLCPVRAGGHECGCLPVLGRMVMEQCVARLDVAMFNAILRESANEIPTDPVSDPILDSKVLPIPAGDLSFGSGAQLKNSVGNWSRWLTDMFGMDTD*********************PKSFILLNSFSDLLMLPKDMLMDRSIRQEVCPLISLSLVKRILCNFTPDEFCPDAVPGAVLEALNA***************FPYTAAPVEYNPPSSSDVAEKVA************************ELEELDSPLSSII**************************GSNARYELLREVWS*
********************************GKNLNAKQIETKASITRRDSGNVVSDTNAGTEASEVYENGVTKYVDDLNSFEEVPLDLKSNGTEEL*****************************************************************MKGF********************************************DDKPIEEMKEIDLLDETSN******************EHIDEANLNQKIEEMELRIEKLEEELRDVAALEISLYSVVPE************RRLSRIYIHACKHWTQNKRATIAKNSVSGLVLVAKSCGNDVSRLTFWLSNTIVLREIICQAFGNSHNSTPV**********************KGGSGNKQLNGHLQFDEDWQEMGTFIAALQKVESWIFSRIVESVWWQALTPHMQSPVGSTTKPIGKLLGPALGDQQQGSFSINLWKNAFQDALQKLCPVRAGGHECGCLPVLGRMVMEQCVARLDVAMFNAILRESANEIPTDPVSDPILDSKVLPIPAGDLSFGSGAQLKNSVGNWSRWLTDMFGMDTD****************DGVGEPKSFILLNSFSDLLMLPKDMLMDRSIRQEVCPLISLSLVKRILCNFTPDEFCPDAVPGAVLEALNAESIIERRLSGDSARSFPYTAAPVEY**********KVAEAGGKSHLLRNVSSVQRKGYTSDDELEELDSPLSSIIDKLPPSPSIIATENGNGKHKNHTYYTGSNARYELLREVWSS
******************************************************************EVYENGVTKYVDDL**********************************************************************************************************************************************DLLDE***********************IDEANLNQKIEEMELRIEKLEEELRDVAALEISLYSVVPEHGSSAHKVHSPARRLSRIYIHACKHWTQNKRATIAKNSVSGLVLVAKSCGNDVSRLTFWLSNTIVLREIICQAFGN*****************************************LQFDEDWQEMGTFIAALQKVESWIFSRIVESVWWQALTPH************************QGSFSINLWKNAFQDALQKLCPVRAGGHECGCLPVLGRMVMEQCVARLDVAMFNAILRESANEIPTDPVSDPILDSKVLPIPAGDLSFGSGAQLKNSVGNWSRWLTDMFGMD**********************EPKSFILLNSFSDLLMLPKDMLMDRSIRQEVCPLISLSLVKRILCNFTPDEFCPDAVPGAVLEALNAESIIERRLSGDSARSFPYTAAPVEYNPPSSSDVAEKVAEAG******************SDDELEELDSPLSSIIDKL*************************NARY**LREVWSS
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MKEVDKRKINNKQPRRSAKTERTEQKQRQENGGKNLNAKQIETKASITRRDSGNVVSDTNAGTEASEVYENGVTKYVDDLNSFEEVPLDLKSNGTEELTDYEKQGKQGKEEVSDSETVKDSVSSQEDSLSVEGEKVKKSSTVPKIKNSSVNDSPGSRVRSGREMKGFPNTPKKPTKPDRGSLSINTKSSSGKSCNEMKVPTKPSSETSEGVDDKPIEEMKEIDLLDETSNGAQSVASDNETVDTEESGEHIDxxxxxxxxxxxxxxxxxxxxxxxxxxxxEISLYSVVPEHGSSAHKVHSPARRLSRIYIHACKHWTQNKRATIAKNSVSGLVLVAKSCGNDVSRLTFWLSNTIVLREIICQAFGNSHNSTPVTRISESNGFSKKSEGKSQSLKWKGGSGNKQLNGHLQFDEDWQEMGTFIAALQKVESWIFSRIVESVWWQALTPHMQSPVGSTTKPIGKLLGPALGDQQQGSFSINLWKNAFQDALQKLCPVRAGGHECGCLPVLGRMVMEQCVARLDVAMFNAILRESANEIPTDPVSDPILDSKVLPIPAGDLSFGSGAQLKNSVGNWSRWLTDMFGMDTDDSPKEDQDFTEDDDGQDGVGEPKSFILLNSFSDLLMLPKDMLMDRSIRQEVCPLISLSLVKRILCNFTPDEFCPDAVPGAVLEALNAESIIERRLSGDSARSFPYTAAPVEYNPPSSSDVAEKVAEAGGKSHLLRNVSSVQRKGYTSDDELEELDSPLSSIIDKLPPSPSIIATENGNGKHKNHTYYTGSNARYELLREVWSS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query788
255571608796 conserved hypothetical protein [Ricinus 0.982 0.972 0.686 0.0
356570502810 PREDICTED: uncharacterized protein LOC10 0.994 0.967 0.650 0.0
359481826715 PREDICTED: uncharacterized protein LOC10 0.873 0.962 0.743 0.0
356503466 895 PREDICTED: uncharacterized protein LOC10 0.996 0.877 0.644 0.0
357509807710 hypothetical protein MTR_7g092460 [Medic 0.870 0.966 0.669 0.0
297739709652 unnamed protein product [Vitis vinifera] 0.795 0.961 0.684 0.0
224120378689 predicted protein [Populus trichocarpa] 0.738 0.844 0.774 0.0
224137966637 predicted protein [Populus trichocarpa] 0.732 0.905 0.766 0.0
449466590795 PREDICTED: uncharacterized protein LOC10 0.970 0.962 0.588 0.0
449519088795 PREDICTED: uncharacterized LOC101213868 0.970 0.962 0.587 0.0
>gi|255571608|ref|XP_002526750.1| conserved hypothetical protein [Ricinus communis] gi|223533939|gb|EEF35664.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
 Score = 1081 bits (2796), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 555/808 (68%), Positives = 648/808 (80%), Gaps = 34/808 (4%)

Query: 1   MKEVDKRKI-NNKQPRRSAKTERTEQKQRQENGGKNLNAKQIETKASITRRDSGNVVSDT 59
           MKE +KR+  NN Q +R AKTE+  QK  Q      L AK+ E+K      DS  VVSD+
Sbjct: 1   MKETNKRRTPNNNQSKRVAKTEKRVQKPHQ-----TLTAKETESKP-----DSSIVVSDS 50

Query: 60  NAGTEASEVYENGVTKYVDDLNSFEEVPLDLKSNGT----------EELT-DY-EKQGKQ 107
           N G+E S+VYEN V  YVDD+N FEE P D KSN            ++L+ DY EK+ KQ
Sbjct: 51  NTGSEPSQVYENLVIHYVDDVNRFEEAPQDPKSNSVTANANKNDILDDLSNDYLEKERKQ 110

Query: 108 GKEEVSDSETVKDSVSSQEDSLSVEG-EKVKKSSTVPK-IKNS-SVNDSPGSRVRSGREM 164
           GKEE SD+ET+KDSVSSQ DSL+ +  EKV+K S VPK + N  S   S   RVRS +  
Sbjct: 111 GKEEESDTETIKDSVSSQGDSLTADDDEKVEKVSRVPKSVSNKDSSESSRAHRVRSDKTS 170

Query: 165 KGFPN-TPKKPTKPDRGSLSINTKSS-SGKSCNEMKVPTKPSSETSEGVDDKPIEEMKEI 222
           K   N TPKKP KP +G   +++K+S   K+  +MKVP+KPS E+SEG D+KP E + EI
Sbjct: 171 KPQSNNTPKKPAKPIKGPSKVSSKTSLVDKNSRDMKVPSKPSLESSEGADEKPTEGLNEI 230

Query: 223 DLLDETSNGAQSVASDNETVDTEESGEHIDEANLNQKIEEMELRIEKLEEELRDVAALEI 282
           D+LDETSNG QSVASDNETVD EE+GEH DE  LNQ+I EME+++ KLEEELR+VAALEI
Sbjct: 231 DVLDETSNGTQSVASDNETVDAEENGEHEDEVALNQRIGEMEIKVGKLEEELREVAALEI 290

Query: 283 SLYSVVPEHGSSAHKVHSPARRLSRIYIHACKHWTQNKRATIAKNSVSGLVLVAKSCGND 342
           SLYSVVPEHGSSAHKVH+PARRLSR+YIHACKHW Q+KRATIAKN+VSGLVL++KSCGND
Sbjct: 291 SLYSVVPEHGSSAHKVHTPARRLSRLYIHACKHWAQDKRATIAKNTVSGLVLISKSCGND 350

Query: 343 VSRLTFWLSNTIVLREIICQAFGNSHNSTPVTRISESNGFSKKSEGKSQSLKWKGGSGNK 402
           V RLTFWLSNTI+LREII QAFG+S NS+ +T+ S  NG SKK+EGK+ +LKWKGGSG++
Sbjct: 351 VPRLTFWLSNTIMLREIISQAFGSSRNSSALTKCSAPNGGSKKNEGKAAALKWKGGSGSR 410

Query: 403 QLNGHLQFDEDWQEMGTFIAALQKVESWIFSRIVESVWWQALTPHMQSPVG--STTKPIG 460
           Q+NG +Q  +DWQE GT+ AAL+KVESWIFSRIVESVWWQA+TPHMQSP G  S+ K  G
Sbjct: 411 QVNGFMQLVDDWQETGTYTAALEKVESWIFSRIVESVWWQAVTPHMQSPGGTLSSNKSFG 470

Query: 461 KLLGPALGDQQQGSFSINLWKNAFQDALQKLCPVRAGGHECGCLPVLGRMVMEQCVARLD 520
           +L+GPALGD QQGSFSINLW NAF+DA Q+LCPVRAGGHECGCLP++ RMVMEQCV+RLD
Sbjct: 471 RLMGPALGDHQQGSFSINLWNNAFRDAFQRLCPVRAGGHECGCLPIIARMVMEQCVSRLD 530

Query: 521 VAMFNAILRESANEIPTDPVSDPILDSKVLPIPAGDLSFGSGAQLKNSVGNWSRWLTDMF 580
           VAMFNAILRESA++IPTDPVSDPI+DSKVLPIPAGDLSFGSGAQLKNSVG WSRWLTDMF
Sbjct: 531 VAMFNAILRESAHDIPTDPVSDPIVDSKVLPIPAGDLSFGSGAQLKNSVGTWSRWLTDMF 590

Query: 581 GMDTDDSPKEDQDFTEDDDGQDGVGEPKSFILLNSFSDLLMLPKDMLMDRSIRQEVCPLI 640
           GMD+DDS KEDQ  ++DD+ +   GEPK+F LLN  SDLLMLPKDMLMDRSIR+EVCP I
Sbjct: 591 GMDSDDSLKEDQLSSDDDERKS--GEPKAFNLLNELSDLLMLPKDMLMDRSIRKEVCPSI 648

Query: 641 SLSLVKRILCNFTPDEFCPDAVPGAVLEALNAESIIERRLSGDSARSFPYTAAPVEYNPP 700
            L LVKRILCNFTPDEFCPDAVPG +LEALNAESI+ERRLSGDS R+FPYTA PV Y PP
Sbjct: 649 CLPLVKRILCNFTPDEFCPDAVPGDLLEALNAESIVERRLSGDSTRNFPYTAGPVVYAPP 708

Query: 701 SSSDVAEKVAEAGGKSHLLRNVSSVQRKGYTSDDELEELDSPLSSIIDKLPPSPSIIATE 760
           SS+DV+EKVAE G KS L RNVS+VQRKGYTSD+ELEELDSPL+SII+    SP+ +   
Sbjct: 709 SSADVSEKVAEVGAKSELSRNVSAVQRKGYTSDEELEELDSPLTSIIENSLSSPTSVP-- 766

Query: 761 NGNGKHKNHTYYTGSNARYELLREVWSS 788
            GNG H  HT Y  +NAR ELLR+VWS+
Sbjct: 767 KGNGNHLEHTGYIVTNARNELLRQVWST 794




Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356570502|ref|XP_003553424.1| PREDICTED: uncharacterized protein LOC100804499 [Glycine max] Back     alignment and taxonomy information
>gi|359481826|ref|XP_002282962.2| PREDICTED: uncharacterized protein LOC100253823 [Vitis vinifera] Back     alignment and taxonomy information
>gi|356503466|ref|XP_003520529.1| PREDICTED: uncharacterized protein LOC100777738 [Glycine max] Back     alignment and taxonomy information
>gi|357509807|ref|XP_003625192.1| hypothetical protein MTR_7g092460 [Medicago truncatula] gi|124360125|gb|ABN08141.1| hypothetical protein MtrDRAFT_AC155881g14v1 [Medicago truncatula] gi|355500207|gb|AES81410.1| hypothetical protein MTR_7g092460 [Medicago truncatula] Back     alignment and taxonomy information
>gi|297739709|emb|CBI29891.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224120378|ref|XP_002331033.1| predicted protein [Populus trichocarpa] gi|222872963|gb|EEF10094.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224137966|ref|XP_002322696.1| predicted protein [Populus trichocarpa] gi|222867326|gb|EEF04457.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449466590|ref|XP_004151009.1| PREDICTED: uncharacterized protein LOC101213868 [Cucumis sativus] Back     alignment and taxonomy information
>gi|449519088|ref|XP_004166567.1| PREDICTED: uncharacterized LOC101213868 [Cucumis sativus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query788
TAIR|locus:2053834669 AT2G42320 "AT2G42320" [Arabido 0.812 0.956 0.527 2e-192
TAIR|locus:2169349723 AT5G06930 [Arabidopsis thalian 0.414 0.452 0.520 7.6e-133
TAIR|locus:2082319921 AT3G01810 "AT3G01810" [Arabido 0.895 0.766 0.382 1.2e-120
TAIR|locus:2169293848 AT5G43230 "AT5G43230" [Arabido 0.456 0.424 0.449 1.3e-107
TAIR|locus:504955937734 AT2G22795 "AT2G22795" [Arabido 0.284 0.305 0.272 1.1e-07
DICTYBASE|DDB_G0291444447 DDB_G0291444 [Dictyostelium di 0.302 0.532 0.256 1e-06
DICTYBASE|DDB_G0293562527 DDB_G0293562 [Dictyostelium di 0.310 0.464 0.236 1.7e-06
DICTYBASE|DDB_G02911251087 gnrA "gelsolin-related protein 0.456 0.331 0.228 2.2e-06
FB|FBgn0037836 2743 CG14692 [Drosophila melanogast 0.296 0.085 0.252 5.5e-06
WB|WBGene00021913679 cec-8 [Caenorhabditis elegans 0.309 0.359 0.242 2.4e-05
TAIR|locus:2053834 AT2G42320 "AT2G42320" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1657 (588.4 bits), Expect = 2.0e-192, Sum P(3) = 2.0e-192
 Identities = 359/680 (52%), Positives = 443/680 (65%)

Query:    95 TEELTDYEKQGKQGKEEVSDSETVKDSVSSQEDSLSVEGEKVKKSSTVPKIKNSSVNDSP 154
             T+ +   +K  K   ++ ++ E  KD + ++E+S ++    V   ST+    + S     
Sbjct:    16 TKSVRKDQKLQKTNSQKKTEQEKHKD-LDTKEESSNIS--TVASDSTIQSDPSESYETVD 72

Query:   155 GSRVRSGREMKGFPNTPKKPTKPDRGSLSINTKSS---SGKSCNEMKVPTKPSSETSEGV 211
                VR   +  G   +     + D  S+   T+     SG  C+  K       E  +  
Sbjct:    73 ---VRYLDDDNGVIASADAHQESDSSSVVDKTEKEHNLSGSICDLEK--DVDEQECKDAN 127

Query:   212 DDKPIEEMKEIDLLDETSNGAQSVASDNETVD-TEESGEHIDEANLNQXXXXXXXXXXXX 270
              DK   E    D+ ++ SNGA S  S+NE  D TE +G + ++ +  +            
Sbjct:   128 IDKDAREGISADVWEDASNGALSAGSENEAADVTENNGGNFEDGSSEEKIERLETRIEKL 187

Query:   271 XXXXXDVAALEISLYSVVPEHGSSAHKVHSPARRLSRIYIHACKHWTQNKRATIAKNSVS 330
                  +VAALEISLYSVVP+H SSAHK+H+PARR+SRIYIHACKH+TQ KRATIA+NSVS
Sbjct:   188 EEELREVAALEISLYSVVPDHCSSAHKLHTPARRISRIYIHACKHFTQGKRATIARNSVS 247

Query:   331 GLVLVAKSCGNDVSRLTFWLSNTIVLREIICQAFGNSHNSTPVTRISESNGFSKKSEGKS 390
             GLVLVAKSCGNDVSRLTFWLSN I LR+II QAFG S     +T+ISE N       GK 
Sbjct:   248 GLVLVAKSCGNDVSRLTFWLSNIIALRQIISQAFGRSR----ITQISEPNESGNSDSGKK 303

Query:   391 QSLKWKGGSGNKQLNGHLQFDEDWQEMGTFIAALQKVESWIFSRIVESVWWQALTPHMQS 450
              +L+WK        NG  Q  EDWQE  TF  AL+K+E W+FSRIVESVWWQ  TPHMQS
Sbjct:   304 TNLRWK--------NGFQQLLEDWQETETFTTALEKIEFWVFSRIVESVWWQVFTPHMQS 355

Query:   451 PV--GSTTKPIGKLLGPALGDQQQGSFSINLWKNAFQDALQKLCPVRAGGHECGCLPVLG 508
             P    S +K  GKL+GP+LGDQ QG+FSI+LWKNAF+DALQ++CP+R  GHECGCLPVL 
Sbjct:   356 PEDDSSASKSNGKLMGPSLGDQNQGTFSISLWKNAFRDALQRICPMRGAGHECGCLPVLA 415

Query:   509 RMVMEQCVARLDVAMFNAILRESANEIPTDPVSDPILDSKVLPIPAGDLSFGSGAQLKNS 568
             RMVM++C+ R DVAMFNAILRES ++IPTDPVSDPILDSKVLPIPAGDLSFGSGAQLKN+
Sbjct:   416 RMVMDKCIGRFDVAMFNAILRESEHQIPTDPVSDPILDSKVLPIPAGDLSFGSGAQLKNA 475

Query:   569 VGNWSRWLTDMFGMDTDDSPKXXXXXXXXXXXXXXVGEPKSFILLNSFSXXXXXXXXXXX 628
             +GNWSR LT+MFGM++DDS                  E K+F+LLN  S           
Sbjct:   476 IGNWSRCLTEMFGMNSDDSSAKEKRNSEDDHV-----ESKAFVLLNELSDLLMLPKDMLM 530

Query:   629 XRSIRQEVCPLISLSLVKRILCNFTPDEFCPDAVPGAVLEALNA-ESIIERRLSGDSARS 687
               SIR+E+CP ISL L+KRILCNFTPDEFCPD VPGAVLE LNA ESI +R+LS     S
Sbjct:   531 EISIREEICPSISLPLIKRILCNFTPDEFCPDQVPGAVLEELNAAESIGDRKLS---EAS 587

Query:   688 FPYTAAPVEYNPPSSSDVAEKVAEAGGKSHLLRNVSSVQRKGYTSDDELEELDSPLSSII 747
             FPY A+ V Y PPS+ D+AEKVAEA  K  L RNVS +QRKGYTSD+ELEELDSPL+SI+
Sbjct:   588 FPYAASSVSYMPPSTMDIAEKVAEASAK--LSRNVSMIQRKGYTSDEELEELDSPLTSIV 645

Query:   748 DKLPPSPSIIATENGNGKHK 767
             DK   +     +   N ++K
Sbjct:   646 DK---ASDFTGSATSNARYK 662


GO:0003674 "molecular_function" evidence=ND
GO:0005634 "nucleus" evidence=ISM
GO:0008150 "biological_process" evidence=ND
GO:0019344 "cysteine biosynthetic process" evidence=RCA
TAIR|locus:2169349 AT5G06930 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2082319 AT3G01810 "AT3G01810" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2169293 AT5G43230 "AT5G43230" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:504955937 AT2G22795 "AT2G22795" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0291444 DDB_G0291444 [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0293562 DDB_G0293562 [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0291125 gnrA "gelsolin-related protein" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
FB|FBgn0037836 CG14692 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
WB|WBGene00021913 cec-8 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Fail to connect to STRING server


Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query788
PRK08581619 PRK08581, PRK08581, N-acetylmuramoyl-L-alanine ami 0.003
>gnl|CDD|236304 PRK08581, PRK08581, N-acetylmuramoyl-L-alanine amidase; Validated Back     alignment and domain information
 Score = 40.5 bits (95), Expect = 0.003
 Identities = 40/255 (15%), Positives = 80/255 (31%), Gaps = 42/255 (16%)

Query: 2   KEVDKRKINNKQPRRSAKTERTEQKQRQENGGKNLNAKQIETKASITRRDS--GNVVSDT 59
           K+ +  + +     +            Q+N  K  +     T  S    D    N+    
Sbjct: 44  KKSNDDETSKDTSSKDTDKADNNNTSNQDNNDKKFSTIDSSTSDSNNIIDFIYKNLPQTN 103

Query: 60  NAGTEASEVYENGVTKYVDDLNSFEEVPLDLKSNGTEELTDYEKQGKQGKEEVSDSETVK 119
                    Y++  +      N F         N   +++DYE+     K     ++   
Sbjct: 104 INQLLTKNKYDDNYSLTTLIQNLF---------NLNSDISDYEQPRNSEKSTNDSNKNSD 154

Query: 120 DSVSSQEDSLSVEGEKVKKSSTVPKIKNSSVNDSPGSRVRSGREMKGFPNTPKKPTKPDR 179
            S+ +  D+         +SS   K  N     S  ++          P+T  K     +
Sbjct: 155 SSIKNDTDT---------QSSKQDKADNQKAPSSNNTK----------PSTSNKQPNSPK 195

Query: 180 GSLSINTKSSSGKSCNEMKVPTKPSSETSEGVDDKPIEEMKEIDLLDETSNGA----QSV 235
            +    + S      ++     K SS+ ++ + D  ++      +LD+ S  A    +  
Sbjct: 196 PTQPNQSNSQPA---SDDTANQKSSSKDNQSMSDSALDS-----ILDQYSEDAKKTQKDY 247

Query: 236 ASDNETVDTEESGEH 250
           AS ++   TE S   
Sbjct: 248 ASQSKKDKTETSNTK 262


Length = 619

Conserved Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 788
PF01843105 DIL: DIL domain; InterPro: IPR018444 Dilute encode 98.45
>PF01843 DIL: DIL domain; InterPro: IPR018444 Dilute encodes a novel type of myosin heavy chain, with a tail, or C-terminal, region that has elements of both type II (alpha-helical coiled-coil) and type I (non-coiled-coil) myosin heavy chains Back     alignment and domain information
Probab=98.45  E-value=8.7e-08  Score=84.44  Aligned_cols=104  Identities=23%  Similarity=0.504  Sum_probs=83.1

Q ss_pred             HHHHHHHHHhHHHHHHHHhhccCCCCCCCCCCCCccCCcccccCCCCccccccchhhhhhhhhHHHHHhhhCCCCCCCCC
Q 003894          510 MVMEQCVARLDVAMFNAILRESANEIPTDPVSDPILDSKVLPIPAGDLSFGSGAQLKNSVGNWSRWLTDMFGMDTDDSPK  589 (788)
Q Consensus       510 lVMEqcVaRLDVAMFNAILRESa~eiPTDPiSDPI~D~kVLPIPaG~lSFGaGAQLKnaIgnWSRwLtDlFGid~dd~~~  589 (788)
                      +++.|+.--+++-.||.||-..                       .-.++-.|+|+|.-|+.-..|+... |+...    
T Consensus         1 Q~f~qlf~~i~~~~fN~ll~~~-----------------------~~~~~~~g~qi~~nls~l~~W~~~~-~l~~~----   52 (105)
T PF01843_consen    1 QLFSQLFHYINASLFNSLLLRR-----------------------KYCSWSKGVQIRYNLSELEDWARSH-GLEEA----   52 (105)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCHS-----------------------S-B-HHHHHHHHHHHHHHHHCCCCT-TSTTH----
T ss_pred             CHHHHHHHHHHHHHHHHHHCCC-----------------------CccccccHHHHHHHHHHHHHHHHhc-ccchh----
Confidence            4678999999999999999521                       2279999999999999999998876 44211    


Q ss_pred             CCCCCCCCCCCCCCCCCCcchhhhhhhhcccccccccccCchhhhhccCCcchHHHHHHhccCCCCCC
Q 003894          590 EDQDFTEDDDGQDGVGEPKSFILLNSFSDLLMLPKDMLMDRSIRQEVCPLISLSLVKRILCNFTPDEF  657 (788)
Q Consensus       590 ~~~~~~~~~~~~~~~~~~k~F~LLnalSDLLMLPKDML~D~SiRkEVCPs~~lpLIkRIL~NF~PDEF  657 (788)
                                      -...|.-|+.+++||+++|..+.|-..++++||+++..-|.+||.+|.||++
T Consensus        53 ----------------~~~~l~~l~Qa~~lL~~~k~~~~d~~~~~~~c~~Ln~~Qi~~iL~~Y~~~~~  104 (105)
T PF01843_consen   53 ----------------AEEHLQPLSQAANLLQLRKSTLQDWDSLRETCPSLNPAQIRKILSNYQPDDY  104 (105)
T ss_dssp             -----------------HHHCHHHHHHHHHCCC--SSHHHHHHHCCCTTTS-HHHHHHHHCCB---TT
T ss_pred             ----------------HHHHHHHHHHHHHHHHhcCcchhHHHHHHHHcccCCHHHHHHHHHhCCCcCC
Confidence                            2468999999999999999999999999999999999999999999999986



The DIL non alpha-helical domain is found in dilute myosin heavy chain proteins and other myosins. In mouse the dilute protein may play a role in the elaboration, maintenance, or function of cellular processes of melanocytes and neurons []. The MYO2 protein of Saccharomyces cerevisiae is implicated in vectorial vesicle transport and is homologous to the dilute protein over practically its entire length [].; PDB: 3MMI_B 2F6H_X.


Homologous Structure Templates

Structure Templates Detected by BLAST ?

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query788
2f6h_X419 Myosin-2, type V myosin; mysoin V, cargo binding, 3e-28
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-12
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-04
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 7e-04
3mmi_A386 Myosin-4; globular tail, dilute domain, motor prot 8e-08
>2f6h_X Myosin-2, type V myosin; mysoin V, cargo binding, cargo transport, vacuole binding, secreatory vescIle binding, structural protein; 2.25A {Saccharomyces cerevisiae} Length = 419 Back     alignment and structure
 Score =  117 bits (293), Expect = 3e-28
 Identities = 54/457 (11%), Positives = 133/457 (29%), Gaps = 83/457 (18%)

Query: 255 NLNQKIEEMELRIEKLEEELRD--VAALEISLYSVVPEHGSSAHKVHSPARRLSRIYIHA 312
            +N+++  +    E L +E+ +  +   E+    V  +   S   V  PAR L  +    
Sbjct: 4   QINEELYRLLEDTEILNQEITEGLLKGFEVPDAGVAIQL--SKRDVVYPARILIIVLSEM 61

Query: 313 CKHWTQNKRATIAKNSVSGLVLVAKSCGND--VSRLTFWLSNTIVLREIICQAFGNSHNS 370
            +     +  +     ++ +  V      +  +    FWL+N   L   +  A  +    
Sbjct: 62  WRFGLTKQSESFLAQVLTTIQKVVTQLKGNDLIPSGVFWLANVRELYSFVVFALNSI--- 118

Query: 371 TPVTRISESNGFSKKSEGKSQSLKWKGGSGNKQLNGHLQFDEDWQEMGTFIAALQKVESW 430
                                   +K G  +++   ++    + ++        + +   
Sbjct: 119 -------------------LTEETFKNGMTDEEYKEYVSLVTELKDD------FEALSYN 153

Query: 431 IFSRIVESVWWQALTPHMQSPVGSTTKPIGKLLGPALGDQQQGSFSINLWKNAFQDALQK 490
           I++  ++ +  Q L           ++ +               F+ N  +    D L  
Sbjct: 154 IYNIWLKKLQKQ-LQK-KAINAVVISESLPGFSAGETSGFLNKIFA-NTEEYTMDDILTF 210

Query: 491 LCPVRAGGHECGCLPVLGRMVMEQCVARLDVAMFNAILRESANEIPTDPVSDPILDSKVL 550
              +            +   V+   +  +D   FN ++                      
Sbjct: 211 FNSIYWCMKSFHIENEVFHAVVTTLLNYVDAICFNELI---------------------- 248

Query: 551 PIPAGDLSFGSGAQLKNSVGNWSRWLTDMFGMDTDDSPKEDQDFTEDDDGQDGVGEPKSF 610
            +    LS+  G QL  +V     W       D  +                        
Sbjct: 249 -MKRNFLSWKRGLQLNYNVTRLEEWCKTHGLTDGTEC----------------------L 285

Query: 611 ILLNSFSDLLMLPKDMLMDRSIRQEVCPLISLSLVKRILCNFTPDEFCPDAVPGAVLEAL 670
             L   + LL + K  + D  I + +C  ++ + +++++  +   ++    +P  +L  +
Sbjct: 286 QHLIQTAKLLQVRKYTIEDIDILRGICYSLTPAQLQKLISQYQVADY-ESPIPQEILRYV 344

Query: 671 NAESIIERRLSGDSARSFPYTAAPVEYNPPSSSDVAE 707
                 E  LS     S  +  +   +  P +    +
Sbjct: 345 ADIVKKEAALSSSGNDSKGHEHSSSIFITPETGPFTD 381


>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3mmi_A Myosin-4; globular tail, dilute domain, motor protein; 2.30A {Saccharomyces cerevisiae} Length = 386 Back     alignment and structure

Structure Templates Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query788
2f6h_X419 Myosin-2, type V myosin; mysoin V, cargo binding, 99.14
3mmi_A386 Myosin-4; globular tail, dilute domain, motor prot 98.75
>2f6h_X Myosin-2, type V myosin; mysoin V, cargo binding, cargo transport, vacuole binding, secreatory vescIle binding, structural protein; 2.25A {Saccharomyces cerevisiae} Back     alignment and structure
Probab=99.14  E-value=1.9e-10  Score=121.55  Aligned_cols=289  Identities=16%  Similarity=0.243  Sum_probs=192.5

Q ss_pred             ccccCchhhhhhHHHHHHhccccchhhhhhhhhhcceeEEEeecc-cCC-CcchhhhhhhHHHHHHHH--HHHhcCCCCC
Q 003894          295 AHKVHSPARRLSRIYIHACKHWTQNKRATIAKNSVSGLVLVAKSC-GND-VSRLTFWLSNTIVLREII--CQAFGNSHNS  370 (788)
Q Consensus       295 shKvHtPARRLSRlYiHAcK~~s~~krAsaArn~VSGLVLVaKaC-GND-VpRLTFWLSNtVVLReII--sqa~~~s~~~  370 (788)
                      .+-+-.||.=|-..-.|+.|.....++-+.--.++.++=-|.+.. |+| +..|.|||||+.-|--.+  .|.....   
T Consensus        44 ~~~~l~PA~il~~cl~~~~~~~~~~~~~~ll~~ii~~I~~~v~~~~~~d~i~~lafWLSN~~~LL~~L~~k~~~~~~---  120 (419)
T 2f6h_X           44 KRDVVYPARILIIVLSEMWRFGLTKQSESFLAQVLTTIQKVVTQLKGNDLIPSGVFWLANVRELYSFVVFALNSILT---  120 (419)
T ss_dssp             HHHHSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTCCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
T ss_pred             CCCcchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhcCCCcchhhhhHHHHHHHHHHHHHHHhhhhhhc---
Confidence            455668998877766677777544444444444555544444555 467 588999999999999988  4443100   


Q ss_pred             CCcccccccCCCCCCCcCCcccccccCCCCCcccCCccCCCCccch----hhHHHHHHhhhhhhhhhhhHHHHHHh---h
Q 003894          371 TPVTRISESNGFSKKSEGKSQSLKWKGGSGNKQLNGHLQFDEDWQE----MGTFIAALQKVESWIFSRIVESVWWQ---A  443 (788)
Q Consensus       371 ~~~~~~~~~ng~~k~~~~~~~~~~wk~~~~~k~~~~~~~~~~dW~e----~~Tf~~ALeKvEsWIFSRIVESVWWQ---t  443 (788)
                               ++ +  .   ..+                ....+|.+    ...|...|+-+.-.||+.++..+-=.   .
T Consensus       121 ---------~~-~--~---~~~----------------~~~~~~~~y~~l~~~~~~~L~~l~~~iy~~li~~l~k~L~p~  169 (419)
T 2f6h_X          121 ---------EE-T--F---KNG----------------MTDEEYKEYVSLVTELKDDFEALSYNIYNIWLKKLQKQLQKK  169 (419)
T ss_dssp             ---------CC-C-------------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ---------cC-c--c---ccc----------------cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                     00 0  0   000                01234533    44566778888889999877555322   3


Q ss_pred             hcCCccCCCC----CCcccccccCCCCCCcccccchhHHHHHHHHHHHHHHccccCCCCCCCCchHHHHHHHHHHHHHHh
Q 003894          444 LTPHMQSPVG----STTKPIGKLLGPALGDQQQGSFSINLWKNAFQDALQKLCPVRAGGHECGCLPVLGRMVMEQCVARL  519 (788)
Q Consensus       444 lTPhMQs~~~----~s~k~~G~~~~~~lGDq~QG~fSI~LWK~AF~dA~eRLCP~RagghECGCLpvLaRlVMEqcVaRL  519 (788)
                      +.|-|+-+..    ...+..| +.+...+.  +...+++-=-+-|......|+       .|+==|.|.++++.|+..=+
T Consensus       170 l~paIl~~~~~~~~~~~~~~~-~~~k~~~~--~~~~~~~~Il~~L~~~~~~L~-------~~~V~~~l~~Q~fsQlf~~I  239 (419)
T 2f6h_X          170 AINAVVISESLPGFSAGETSG-FLNKIFAN--TEEYTMDDILTFFNSIYWCMK-------SFHIENEVFHAVVTTLLNYV  239 (419)
T ss_dssp             HHHHHTTSCSSTTTTC------------------CCCHHHHHHHHHHHHHHHH-------HTTCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHhCcccccccccccccc-cccccccC--CCccCHHHHHHHHHHHHHHHH-------HcCCCHHHHHHHHHHHHHHH
Confidence            4455553321    1111111 00111111  112343333344444444442       24445889999999999999


Q ss_pred             HHHHHHHHhhccCCCCCCCCCCCCccCCcccccCCCCccccccchhhhhhhhhHHHHHhhhCCCCCCCCCCCCCCCCCCC
Q 003894          520 DVAMFNAILRESANEIPTDPVSDPILDSKVLPIPAGDLSFGSGAQLKNSVGNWSRWLTDMFGMDTDDSPKEDQDFTEDDD  599 (788)
Q Consensus       520 DVAMFNAILRESa~eiPTDPiSDPI~D~kVLPIPaG~lSFGaGAQLKnaIgnWSRwLtDlFGid~dd~~~~~~~~~~~~~  599 (788)
                      ++-+||.||-.                       .+-.+|-.|.|+|.-|+..-.|+... |+..               
T Consensus       240 n~~lFN~LL~r-----------------------~~~cs~s~G~qIr~nls~Le~W~~~~-~l~~---------------  280 (419)
T 2f6h_X          240 DAICFNELIMK-----------------------RNFLSWKRGLQLNYNVTRLEEWCKTH-GLTD---------------  280 (419)
T ss_dssp             HHHHHHHHHTC-----------------------SSCCCHHHHHHHHHHHHHHHHHHHHT-TCTT---------------
T ss_pred             HHHHHHHHhcc-----------------------CcccchhhHHHHHhhHHHHHHHHHHc-CChh---------------
Confidence            99999999852                       24589999999999999999999987 5410               


Q ss_pred             CCCCCCCCcchhhhhhhhcccccccccccCchhhhhccCCcchHHHHHHhccCCCCCCCCCCCChHHHHHhhhh
Q 003894          600 GQDGVGEPKSFILLNSFSDLLMLPKDMLMDRSIRQEVCPLISLSLVKRILCNFTPDEFCPDAVPGAVLEALNAE  673 (788)
Q Consensus       600 ~~~~~~~~k~F~LLnalSDLLMLPKDML~D~SiRkEVCPs~~lpLIkRIL~NF~PDEFcPDPVP~~VlEaLnsE  673 (788)
                         +   ...|.-|+.++.||.++|.-+.|-....++||.++..=|.|||..|.||+| .+|||+.|+..+.+.
T Consensus       281 ---a---~~~L~~l~Qa~~lLq~~k~~~~d~~~i~~~C~~Ln~~Ql~~il~~Y~~d~~-e~~v~~~~i~~v~~~  347 (419)
T 2f6h_X          281 ---G---TECLQHLIQTAKLLQVRKYTIEDIDILRGICYSLTPAQLQKLISQYQVADY-ESPIPQEILRYVADI  347 (419)
T ss_dssp             ---H---HHHTHHHHHHHHHTTSCCSSHHHHHHHHHHTTTSCHHHHHHHHHHCCCCTT-SCCCCHHHHHHHHHH
T ss_pred             ---H---HHHHHHHHHHHHHHhhCCCchhhHHHHHHHhhcCCHHHHHHHHHhCCCccC-CCCCCHHHHHHHHHH
Confidence               1   235888999999999999988888889999999999999999999999999 999999999998754



>3mmi_A Myosin-4; globular tail, dilute domain, motor protein; 2.30A {Saccharomyces cerevisiae} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

No hit with probability above 80.00