BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 003896
(788 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5YDB5|CPL2_ARATH RNA polymerase II C-terminal domain phosphatase-like 2
OS=Arabidopsis thaliana GN=CPL2 PE=1 SV=3
Length = 770
Score = 918 bits (2372), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 477/774 (61%), Positives = 577/774 (74%), Gaps = 49/774 (6%)
Query: 1 MSRLGYKNIVYHGDVCLGELDTILVSDEN-FQFPNNEIRIRHISPSSERCIPLSILHTIS 59
M+RLG+K++VYHGD+ LGELD VS + F+FPN+EIRI H+SP+ ERC PL+IL TI+
Sbjct: 1 MNRLGHKSVVYHGDLRLGELDVNHVSSSHEFRFPNDEIRIHHLSPAGERCPPLAILQTIA 60
Query: 60 SFSLRCKLESSAPVEQPHLINLHASCFYEFKTAVVVIGDEEIHLVAMPSKQKKFPCFWCY 119
SF++RCKLESSAPV+ L++LHA CF+E KTAVV++GDEEIHLVAMPSK+KKFPCFWC+
Sbjct: 61 SFAVRCKLESSAPVKSQELMHLHAVCFHELKTAVVMLGDEEIHLVAMPSKEKKFPCFWCF 120
Query: 120 SVSSGLYNSCLGMLNLRCLAIVFDLDETLIVANTMKSFEDRIEALRSWIAREPDQIRASG 179
SV SGLY+SCL MLN RCL+IVFDLDETLIVANTMKSFEDRIEAL+SWI+RE D +R +G
Sbjct: 121 SVPSGLYDSCLRMLNTRCLSIVFDLDETLIVANTMKSFEDRIEALKSWISREMDPVRING 180
Query: 180 MSAELKRYMDDRTLLKQYTENDCVMDNGKVFKVQQEEVPPPSENHERIVRPVIRIPERNL 239
MSAELKRYMDDR LLKQY +ND DNG + K Q EEV P S+ E++ RPVIR+PE+N
Sbjct: 181 MSAELKRYMDDRMLLKQYIDNDYAFDNGVLLKAQPEEVRPTSDGQEKVCRPVIRLPEKNT 240
Query: 240 VLTRINPENRDTSVLVRLRPAWEDLRSYLIAKGRKRFEVYVCTMAERDYALEMWRLLDPE 299
VLTRI PE RDTSVLV+LRPAWE+LRSYL AK RKRFEVYVCTMAERDYALEMWRLLDPE
Sbjct: 241 VLTRIKPEIRDTSVLVKLRPAWEELRSYLTAKTRKRFEVYVCTMAERDYALEMWRLLDPE 300
Query: 300 GHLIGSKQLLDRVVCVKSGSRKSLLNVFQRGLCHPKMAMVIDDRCKVWEDKDQPRVHVVP 359
HLI K+L DR+VCVK ++KSLL+VF G+CHPKMAMVIDDR KVWEDKDQPRVHVV
Sbjct: 301 AHLISLKELRDRIVCVKPDAKKSLLSVFNGGICHPKMAMVIDDRMKVWEDKDQPRVHVVS 360
Query: 360 AFTPYYAPQAETANAVPVLCVARNVACNVRGCFFKEFDENLLRSISEVFYEDEAVNLPAA 419
A+ PYYAPQAETA VP LCVARNVACNVRG FFKEFDE+L+ SIS V+YED+ NLP +
Sbjct: 361 AYLPYYAPQAETALVVPHLCVARNVACNVRGYFFKEFDESLMSSISLVYYEDDVENLPPS 420
Query: 420 PDVSNYLMSEDANFAPNGSTNA-PMSEGLNGLEVERRLNQSDEKYVVDSGLPSMKNSSDL 478
PDVSNY++ ED FA NG+ NA P++EG+ G EVERRLNQ+ S LP+ N ++
Sbjct: 421 PDVSNYVVIEDPGFASNGNINAPPINEGMCGGEVERRLNQA--AAADHSTLPATSN-AEQ 477
Query: 479 KSETSLLPVAV---ASNATVPATVVPSQKPGLLGAPIRRDNSS---------MKHGFDLR 526
K ET +AV ++ A ++PS KP LLGAP RRD + M+ G D+R
Sbjct: 478 KPETPKPQIAVIPNNASTATAAALLPSHKPSLLGAP-RRDGFTFSDGGRPLMMRPGVDIR 536
Query: 527 NQNSAQPPL----------PKLHGQGGWIVEEEVNR-------------VLPNNRPVSIA 563
NQN QPP+ +H GGW+V++E NR P+ P S
Sbjct: 537 NQNFNQPPILAKIPMQPPSSSMHSPGGWLVDDE-NRPSFPGRPSGLYPSQFPHGTPGSAP 595
Query: 564 TGLPSHASQAKGEEAIMAHDLHKQNLPPASQPPEIGVSQNHVSSNSREFLTEGGKTNLLP 623
G +H S + EE M DL +QN P+ Q E G+SQNH+ SN RE T+GGK+N
Sbjct: 596 VGPFAHPSHLRSEEVAMDDDLKRQN--PSRQTTEGGISQNHLVSNGREHHTDGGKSNGGQ 653
Query: 624 SYLSIGVLQEIGKRCSSKVEFRSVVSTSKDLQFSVEVLFTGEKIGVGMGKTRKDAQQQAA 683
S+L + LQEIG+RC SKVEFR+V+ST+K+LQFSVEVLFTGEKIG+GM KT+KDA QQAA
Sbjct: 654 SHLFVSALQEIGRRCGSKVEFRTVISTNKELQFSVEVLFTGEKIGIGMAKTKKDAHQQAA 713
Query: 684 ENALHYLAEKYVAYITPRSGAMDRDFDKLSLENENGFLWDTIISESNEGLREDG 737
ENAL LAEKYVA++ P + R+ +K EN+NGFLW++ SN+GL E+
Sbjct: 714 ENALRSLAEKYVAHVAP----LARETEK-GPENDNGFLWESSEDVSNKGLEEEA 762
>sp|Q5YDB6|CPL1_ARATH RNA polymerase II C-terminal domain phosphatase-like 1
OS=Arabidopsis thaliana GN=CPL1 PE=1 SV=1
Length = 967
Score = 586 bits (1510), Expect = e-166, Method: Compositional matrix adjust.
Identities = 345/788 (43%), Positives = 458/788 (58%), Gaps = 103/788 (13%)
Query: 10 VYHGDVCLGELDTILVSDENFQ-----------------FPNNEIRIRHISPSSERCIPL 52
V+HGD LGEL+ + N Q IRI H S S ERC PL
Sbjct: 9 VFHGDGRLGELEIYPSRELNQQQDDVMKQRKKKQREVMELAKMGIRISHFSQSGERCPPL 68
Query: 53 SILHTISSFSLRCKLESSAPVEQPHLINLHASCFYEFKTAVVVIGDEEIHLVAMPSKQKK 112
+IL TISS L KLE+S Q L ++SC + KTAV+++G EE+HLVAM S+ K
Sbjct: 69 AILTTISSCGLCFKLEASPSPAQESLSLFYSSCLRDNKTAVMLLGGEELHLVAMYSENIK 128
Query: 113 --FPCFWCYSVSSGLYNSCLGMLNLRCLAIVFDLDETLIVANTMKSFEDRIEALRSWIAR 170
PCFW +SV+ G+Y+SCL MLNLRCL IVFDLDETL+VANTM+SFED+I+ + I
Sbjct: 129 NDRPCFWAFSVAPGIYDSCLVMLNLRCLGIVFDLDETLVVANTMRSFEDKIDGFQRRINN 188
Query: 171 EPDQIRASGMSAELKRYMDDRTLLKQYTENDCVMDNGKVFKVQQEEVPPPSENHERIVRP 230
E D R + + AE+KRY DD+ LLKQY E+D V++NG+V KVQ E VP S+NH+ +VRP
Sbjct: 189 EMDPQRLAVIVAEMKRYQDDKNLLKQYIESDQVVENGEVIKVQSEIVPALSDNHQPLVRP 248
Query: 231 VIRIPERNLVLTRINPENRDTSVLVRLRPAWEDLRSYLIAKGRKRFEVYVCTMAERDYAL 290
+IR+ E+N++LTRINP RDTSVLVR+RP+WE+LRSYL AKGRKRFEVYVCTMAERDYAL
Sbjct: 249 LIRLQEKNIILTRINPMIRDTSVLVRMRPSWEELRSYLTAKGRKRFEVYVCTMAERDYAL 308
Query: 291 EMWRLLDPEGHLIGSKQLLDRVVCVKSGSRKSLLNVFQRGLCHPKMAMVIDDRCKVWEDK 350
EMWRLLDPEG+LI + LL R+VCVKSG +KSL NVF G CHPKMA+VIDDR KVW++K
Sbjct: 309 EMWRLLDPEGNLINTNDLLARIVCVKSGFKKSLFNVFLDGTCHPKMALVIDDRLKVWDEK 368
Query: 351 DQPRVHVVPAFTPYYAPQAETANAVPVLCVARNVACNVRGCFFKEFDENLLRSISEVFYE 410
DQPRVHVVPAF PYY+PQAE A A PVLCVARNVAC VRG FF++FD++LL I+E+ YE
Sbjct: 369 DQPRVHVVPAFAPYYSPQAEAA-ATPVLCVARNVACGVRGGFFRDFDDSLLPRIAEISYE 427
Query: 411 DEAVNLPAAPDVSNYLMSEDANFAPNGSTNAPMSEGLNGLEVERRLNQS----------- 459
++A ++P+ PDVS+YL+SED NG+ + +G+ EVERRL ++
Sbjct: 428 NDAEDIPSPPDVSHYLVSEDDTSGLNGNKDPLSFDGMADTEVERRLKEAISASSAVLPAA 487
Query: 460 --DEKYVVDSGLPSMKNSSDLKSETSLLPVAVASNATVPATVVPSQKP------------ 505
D + P SS + + + +P Q+P
Sbjct: 488 NIDPRIAAPVQFPMASASSVSVPVPVQVVQQAIQPSAMAFPSIPFQQPQQPTSIAKHLVP 547
Query: 506 ---GLLGAPIRRDNSS---------------MKHGFDLRNQNSAQPPLPK---------- 537
L +P R + ++HG D R+ ++P P+
Sbjct: 548 SEPSLQSSPAREEGEVPESELDPDTRRRLLILQHGQDTRDPAPSEPSFPQRPPVQAPPSH 607
Query: 538 LHGQGGWI-VEEE-----VNRVLPNNRP-----VSIATGLPSHASQAKGEEAIMAHD--L 584
+ + GW VEEE + R + P + + P H S + D L
Sbjct: 608 VQSRNGWFPVEEEMDPAQIRRAVSKEYPLDSEMIHMEKHRPRHPSFFSKIDNSTQSDRML 667
Query: 585 HKQNLPPA-SQPPEIGVSQNHVSSNSREFLTEGGKTN----------LLP------SYLS 627
H+ PP S + + N+ +S F E N LP + S
Sbjct: 668 HENRRPPKESLRRDEQLRSNNNLPDSHPFYGEDASWNQSSSRNSDLDFLPERSVSATETS 727
Query: 628 IGVLQEIGKRCSSKVEFRSVVSTSKDLQFSVEVLFTGEKIGVGMGKTRKDAQQQAAENAL 687
VL I +C +KVE++ + +S DL+FSVE + +KIG G+GK+R++A +AAE ++
Sbjct: 728 ADVLHGIAIKCGAKVEYKPSLVSSTDLRFSVEAWLSNQKIGEGIGKSRREALHKAAEASI 787
Query: 688 HYLAEKYV 695
LA+ Y+
Sbjct: 788 QNLADGYM 795
>sp|Q03254|FCP1_YEAST RNA polymerase II subunit A C-terminal domain phosphatase
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=FCP1 PE=1 SV=1
Length = 732
Score = 52.0 bits (123), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/126 (31%), Positives = 63/126 (50%), Gaps = 17/126 (13%)
Query: 225 ERIVRPVIRIPERNLVLTRINPENRDTSVLVRLRPAWEDLRSYLIAKGRKRFEVYVCTMA 284
E +V P++ + + +L P R V++RP ++ AK FE+++ TMA
Sbjct: 219 EELVLPLMYMNDDGSMLRP--PPVRKCWYYVKVRPGLKEF----FAKVAPLFEMHIYTMA 272
Query: 285 ERDYALEMWRLLDPEGHLIGSKQLLDRVVCVK---SGSRKSLLNVFQRGLCHPKMAMVID 341
R YAL++ +++DP G L G DR++ S + KSL +F M +VID
Sbjct: 273 TRAYALQIAKIVDPTGELFG-----DRILSRDENGSLTTKSLAKLFP---TDQSMVVVID 324
Query: 342 DRCKVW 347
DR VW
Sbjct: 325 DRGDVW 330
>sp|Q7TSG2|CTDP1_MOUSE RNA polymerase II subunit A C-terminal domain phosphatase OS=Mus
musculus GN=Ctdp1 PE=1 SV=1
Length = 960
Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/124 (33%), Positives = 57/124 (45%), Gaps = 13/124 (10%)
Query: 255 VRLRPAWEDLRSYLIAKGRKRFEVYVCTMAERDYALEMWRLLDPEGHLIGSKQLLDRVVC 314
RLRP +D + K K +E++V T R YA + LDPE L S ++L R C
Sbjct: 223 TRLRPHCKDF----LEKIAKLYELHVFTFGSRLYAHTIAGFLDPEKKLF-SHRILSRDEC 277
Query: 315 VKSGSRK-SLLNVFQRGLCHPKMAMVIDDRCKVWEDKDQPRVHVVPAFTPYYAPQAETAN 373
+ S+ +L N+F C M +IDDR VW K P + V + Y P N
Sbjct: 278 IDPFSKTGNLRNLFP---CGDSMVCIIDDREDVW--KFAPNLITVKKYV--YFPGTGDVN 330
Query: 374 AVPV 377
A P
Sbjct: 331 APPA 334
>sp|Q9P376|FCP1_SCHPO RNA polymerase II subunit A C-terminal domain phosphatase
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=fcp1 PE=1 SV=1
Length = 723
Score = 48.1 bits (113), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 58/117 (49%), Gaps = 16/117 (13%)
Query: 246 PENRDTSVLVRLRPAWEDLRSYLIAKGRKRFEVYVCTMAERDYALEMWRLLDPEGHLIGS 305
P + ++ RP + + K + +E+++ TM + YA E+ +++DP G L
Sbjct: 211 PSGYTSCYYIKFRPGL----AQFLQKISELYELHIYTMGTKAYAKEVAKIIDPTGKLFQ- 265
Query: 306 KQLLDRVVCVK-SGS--RKSLLNVFQRGLCHPKMAMVIDDRCKVWEDKDQPRVHVVP 359
DRV+ SGS +KSL +F C M +VIDDR VW D + + VVP
Sbjct: 266 ----DRVLSRDDSGSLAQKSLRRLFP---CDTSMVVVIDDRGDVW-DWNPNLIKVVP 314
>sp|Q9Y5B0|CTDP1_HUMAN RNA polymerase II subunit A C-terminal domain phosphatase OS=Homo
sapiens GN=CTDP1 PE=1 SV=3
Length = 961
Score = 47.8 bits (112), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 47/95 (49%), Gaps = 9/95 (9%)
Query: 255 VRLRPAWEDLRSYLIAKGRKRFEVYVCTMAERDYALEMWRLLDPEGHLIGSKQLLDRVVC 314
RLRP +D + K K +E++V T R YA + LDPE L S ++L R C
Sbjct: 223 TRLRPHCKDF----LEKIAKLYELHVFTFGSRLYAHTIAGFLDPEKKLF-SHRILSRDEC 277
Query: 315 VKSGSRKS-LLNVFQRGLCHPKMAMVIDDRCKVWE 348
+ S+ L N+F C M +IDDR VW+
Sbjct: 278 IDPFSKTGNLRNLFP---CGDSMVCIIDDREDVWK 309
>sp|Q00IB6|CPL4_ARATH RNA polymerase II C-terminal domain phosphatase-like 4
OS=Arabidopsis thaliana GN=CPL4 PE=1 SV=1
Length = 440
Score = 43.1 bits (100), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 50/98 (51%), Gaps = 16/98 (16%)
Query: 253 VLVRLRPAWEDLRSYLIAKGRKRFEVYVCTMAERDYALEMWRLLDPEGHLIGSKQLLDRV 312
++ +LRP + S+L + + F +Y+ TM +R+YA +M +LLDP+G G DRV
Sbjct: 175 MMTKLRPF---VHSFL-KEASEMFVMYIYTMGDRNYARQMAKLLDPKGEYFG-----DRV 225
Query: 313 VCVKSGS---RKSLLNVFQRGLCHPKMAMVIDDRCKVW 347
+ G+ KSL V L +++DD W
Sbjct: 226 ISRDDGTVRHEKSLDVV----LGQESAVLILDDTENAW 259
>sp|Q98514|A464_PBCV1 Putative protein A464R OS=Paramecium bursaria Chlorella virus 1
GN=A464R PE=4 SV=1
Length = 275
Score = 42.0 bits (97), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 26/36 (72%)
Query: 656 FSVEVLFTGEKIGVGMGKTRKDAQQQAAENALHYLA 691
F V+V+ G+KI G GK+RKDA+Q A++ ALH +
Sbjct: 233 FIVDVVINGQKISTGTGKSRKDAEQNASKIALHTMG 268
>sp|Q82ZG1|RNC_ENTFA Ribonuclease 3 OS=Enterococcus faecalis (strain ATCC 700802 / V583)
GN=rnc PE=3 SV=1
Length = 230
Score = 41.6 bits (96), Expect = 0.024, Method: Composition-based stats.
Identities = 25/65 (38%), Positives = 37/65 (56%), Gaps = 3/65 (4%)
Query: 631 LQEIGKRCSS-KVEFRSVVST--SKDLQFSVEVLFTGEKIGVGMGKTRKDAQQQAAENAL 687
LQE+ +R +E+R + + D F EV GE IG+G GK++K A+Q AAE AL
Sbjct: 166 LQEVLQRKGDVSIEYRLIKEEGPAHDRTFFTEVYMNGELIGLGQGKSKKLAEQDAAERAL 225
Query: 688 HYLAE 692
+ +
Sbjct: 226 KSIPQ 230
>sp|C1CEK4|RNC_STRZJ Ribonuclease 3 OS=Streptococcus pneumoniae (strain JJA) GN=rnc PE=3
SV=1
Length = 232
Score = 40.8 bits (94), Expect = 0.040, Method: Composition-based stats.
Identities = 23/74 (31%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Query: 615 EGGKTNLLPSYLS-IGVLQEIGKRCSSKVEFRSVVSTSKDLQFSVEVLFTGEKIGVGMGK 673
E G+ ++ Y + + L ++ + + + S + D F VEVL G+ IG G G+
Sbjct: 151 EAGEFEMITDYKTHLQELLQVNGDVAIRYQVISETGPAHDKVFDVEVLVEGKSIGQGQGR 210
Query: 674 TRKDAQQQAAENAL 687
++K A+Q+AA+NA+
Sbjct: 211 SKKLAEQEAAKNAV 224
>sp|B2IPN5|RNC_STRPS Ribonuclease 3 OS=Streptococcus pneumoniae (strain CGSP14) GN=rnc
PE=3 SV=1
Length = 232
Score = 40.8 bits (94), Expect = 0.040, Method: Composition-based stats.
Identities = 23/74 (31%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Query: 615 EGGKTNLLPSYLS-IGVLQEIGKRCSSKVEFRSVVSTSKDLQFSVEVLFTGEKIGVGMGK 673
E G+ ++ Y + + L ++ + + + S + D F VEVL G+ IG G G+
Sbjct: 151 EAGEFEMITDYKTHLQELLQVNGDVAIRYQVISETGPAHDKVFDVEVLVEGKSIGQGQGR 210
Query: 674 TRKDAQQQAAENAL 687
++K A+Q+AA+NA+
Sbjct: 211 SKKLAEQEAAKNAV 224
>sp|Q97QG6|RNC_STRPN Ribonuclease 3 OS=Streptococcus pneumoniae serotype 4 (strain ATCC
BAA-334 / TIGR4) GN=rnc PE=3 SV=1
Length = 232
Score = 40.8 bits (94), Expect = 0.040, Method: Composition-based stats.
Identities = 23/74 (31%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Query: 615 EGGKTNLLPSYLS-IGVLQEIGKRCSSKVEFRSVVSTSKDLQFSVEVLFTGEKIGVGMGK 673
E G+ ++ Y + + L ++ + + + S + D F VEVL G+ IG G G+
Sbjct: 151 EAGEFEMITDYKTHLQELLQVNGDVAIRYQVISETGPAHDKVFDVEVLVEGKSIGQGQGR 210
Query: 674 TRKDAQQQAAENAL 687
++K A+Q+AA+NA+
Sbjct: 211 SKKLAEQEAAKNAV 224
>sp|C1C7M6|RNC_STRP7 Ribonuclease 3 OS=Streptococcus pneumoniae (strain 70585) GN=rnc
PE=3 SV=1
Length = 232
Score = 40.8 bits (94), Expect = 0.040, Method: Composition-based stats.
Identities = 23/74 (31%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Query: 615 EGGKTNLLPSYLS-IGVLQEIGKRCSSKVEFRSVVSTSKDLQFSVEVLFTGEKIGVGMGK 673
E G+ ++ Y + + L ++ + + + S + D F VEVL G+ IG G G+
Sbjct: 151 EAGEFEMITDYKTHLQELLQVNGDVAIRYQVISETGPAHDKVFDVEVLVEGKSIGQGQGR 210
Query: 674 TRKDAQQQAAENAL 687
++K A+Q+AA+NA+
Sbjct: 211 SKKLAEQEAAKNAV 224
>sp|C1CR56|RNC_STRZT Ribonuclease 3 OS=Streptococcus pneumoniae (strain Taiwan19F-14)
GN=rnc PE=3 SV=1
Length = 232
Score = 40.8 bits (94), Expect = 0.041, Method: Composition-based stats.
Identities = 23/74 (31%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Query: 615 EGGKTNLLPSYLS-IGVLQEIGKRCSSKVEFRSVVSTSKDLQFSVEVLFTGEKIGVGMGK 673
E G+ ++ Y + + L ++ + + + S + D F VEVL G+ IG G G+
Sbjct: 151 EAGEFEMITDYKTHLQELLQVNGDVAIRYQVISETGPAHDKVFDVEVLVEGKSIGQGQGR 210
Query: 674 TRKDAQQQAAENAL 687
++K A+Q+AA+NA+
Sbjct: 211 SKKLAEQEAAKNAV 224
>sp|C1CKY7|RNC_STRZP Ribonuclease 3 OS=Streptococcus pneumoniae (strain P1031) GN=rnc
PE=3 SV=1
Length = 232
Score = 40.8 bits (94), Expect = 0.041, Method: Composition-based stats.
Identities = 23/74 (31%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Query: 615 EGGKTNLLPSYLS-IGVLQEIGKRCSSKVEFRSVVSTSKDLQFSVEVLFTGEKIGVGMGK 673
E G+ ++ Y + + L ++ + + + S + D F VEVL G+ IG G G+
Sbjct: 151 EAGEFEMITDYKTHLQELLQVNGDVAIRYQVISETGPAHDKVFDVEVLVEGKSIGQGQGR 210
Query: 674 TRKDAQQQAAENAL 687
++K A+Q+AA+NA+
Sbjct: 211 SKKLAEQEAAKNAV 224
>sp|B8ZJR8|RNC_STRPJ Ribonuclease 3 OS=Streptococcus pneumoniae (strain ATCC 700669 /
Spain 23F-1) GN=rnc PE=3 SV=1
Length = 232
Score = 40.8 bits (94), Expect = 0.041, Method: Composition-based stats.
Identities = 23/74 (31%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Query: 615 EGGKTNLLPSYLS-IGVLQEIGKRCSSKVEFRSVVSTSKDLQFSVEVLFTGEKIGVGMGK 673
E G+ ++ Y + + L ++ + + + S + D F VEVL G+ IG G G+
Sbjct: 151 EAGEFEMITDYKTHLQELLQVNGDVAIRYQVISETGPAHDKVFDVEVLVEGKSIGQGQGR 210
Query: 674 TRKDAQQQAAENAL 687
++K A+Q+AA+NA+
Sbjct: 211 SKKLAEQEAAKNAV 224
>sp|B1IC43|RNC_STRPI Ribonuclease 3 OS=Streptococcus pneumoniae (strain Hungary19A-6)
GN=rnc PE=3 SV=1
Length = 232
Score = 40.8 bits (94), Expect = 0.041, Method: Composition-based stats.
Identities = 23/74 (31%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Query: 615 EGGKTNLLPSYLS-IGVLQEIGKRCSSKVEFRSVVSTSKDLQFSVEVLFTGEKIGVGMGK 673
E G+ ++ Y + + L ++ + + + S + D F VEVL G+ IG G G+
Sbjct: 151 EAGEFEMITDYKTHLQELLQVNGDVAIRYQVISETGPAHDKVFDVEVLVEGKSIGQGQGR 210
Query: 674 TRKDAQQQAAENAL 687
++K A+Q+AA+NA+
Sbjct: 211 SKKLAEQEAAKNAV 224
>sp|Q8DPJ8|RNC_STRR6 Ribonuclease 3 OS=Streptococcus pneumoniae (strain ATCC BAA-255 /
R6) GN=rnc PE=3 SV=1
Length = 232
Score = 40.8 bits (94), Expect = 0.043, Method: Composition-based stats.
Identities = 23/74 (31%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Query: 615 EGGKTNLLPSYLS-IGVLQEIGKRCSSKVEFRSVVSTSKDLQFSVEVLFTGEKIGVGMGK 673
E G+ ++ Y + + L ++ + + + S + D F VEVL G+ IG G G+
Sbjct: 151 EAGEFEMITDYKTHLQELLQVNGDVAIRYQVISETGPAHDKVFDVEVLVEGKSIGQGQGR 210
Query: 674 TRKDAQQQAAENAL 687
++K A+Q+AA+NA+
Sbjct: 211 SKKLAEQEAAKNAV 224
>sp|B5E4Y2|RNC_STRP4 Ribonuclease 3 OS=Streptococcus pneumoniae serotype 19F (strain
G54) GN=rnc PE=3 SV=1
Length = 232
Score = 40.8 bits (94), Expect = 0.043, Method: Composition-based stats.
Identities = 23/74 (31%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Query: 615 EGGKTNLLPSYLS-IGVLQEIGKRCSSKVEFRSVVSTSKDLQFSVEVLFTGEKIGVGMGK 673
E G+ ++ Y + + L ++ + + + S + D F VEVL G+ IG G G+
Sbjct: 151 EAGEFEMITDYKTHLQELLQVNGDVAIRYQVISETGPAHDKVFDVEVLVEGKSIGQGQGR 210
Query: 674 TRKDAQQQAAENAL 687
++K A+Q+AA+NA+
Sbjct: 211 SKKLAEQEAAKNAV 224
>sp|Q04K72|RNC_STRP2 Ribonuclease 3 OS=Streptococcus pneumoniae serotype 2 (strain D39 /
NCTC 7466) GN=rnc PE=3 SV=1
Length = 232
Score = 40.8 bits (94), Expect = 0.043, Method: Composition-based stats.
Identities = 23/74 (31%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Query: 615 EGGKTNLLPSYLS-IGVLQEIGKRCSSKVEFRSVVSTSKDLQFSVEVLFTGEKIGVGMGK 673
E G+ ++ Y + + L ++ + + + S + D F VEVL G+ IG G G+
Sbjct: 151 EAGEFEMITDYKTHLQELLQVNGDVAIRYQVISETGPAHDKVFDVEVLVEGKSIGQGQGR 210
Query: 674 TRKDAQQQAAENAL 687
++K A+Q+AA+NA+
Sbjct: 211 SKKLAEQEAAKNAV 224
>sp|Q8BG15|CTSL2_MOUSE CTD small phosphatase-like protein 2 OS=Mus musculus GN=Ctdspl2
PE=1 SV=1
Length = 465
Score = 40.8 bits (94), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 49/95 (51%), Gaps = 8/95 (8%)
Query: 253 VLVRLRPAWEDLRSYLIAKGRKRFEVYVCTMAERDYALEMWRLLDPEGHLIGSKQLLDRV 312
V VRLRP + + + + + +E+ + T +++ YA ++ +LDP+ L+ + +
Sbjct: 323 VYVRLRPFFREF----LERMSQMYEIILFTASKKVYADKLLNILDPKKQLVRHRLFREHC 378
Query: 313 VCVKSGSRKSLLNVFQRGLCHPKMAMVIDDRCKVW 347
VCV+ K LN+ R L ++ID+ + +
Sbjct: 379 VCVQGNYIKD-LNILGRDLSK---TIIIDNSPQAF 409
>sp|Q05D32|CTSL2_HUMAN CTD small phosphatase-like protein 2 OS=Homo sapiens GN=CTDSPL2
PE=1 SV=2
Length = 466
Score = 40.4 bits (93), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 49/95 (51%), Gaps = 8/95 (8%)
Query: 253 VLVRLRPAWEDLRSYLIAKGRKRFEVYVCTMAERDYALEMWRLLDPEGHLIGSKQLLDRV 312
V VRLRP + + + + + +E+ + T +++ YA ++ +LDP+ L+ + +
Sbjct: 324 VYVRLRPFFREF----LERMSQMYEIILFTASKKVYADKLLNILDPKKQLVRHRLFREHC 379
Query: 313 VCVKSGSRKSLLNVFQRGLCHPKMAMVIDDRCKVW 347
VCV+ K LN+ R L ++ID+ + +
Sbjct: 380 VCVQGNYIKD-LNILGRDLSK---TIIIDNSPQAF 410
>sp|Q5XIK8|CTSL2_RAT CTD small phosphatase-like protein 2 OS=Rattus norvegicus
GN=Ctdspl2 PE=2 SV=1
Length = 465
Score = 40.4 bits (93), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 49/95 (51%), Gaps = 8/95 (8%)
Query: 253 VLVRLRPAWEDLRSYLIAKGRKRFEVYVCTMAERDYALEMWRLLDPEGHLIGSKQLLDRV 312
V VRLRP + + + + + +E+ + T +++ YA ++ +LDP+ L+ + +
Sbjct: 323 VYVRLRPFFREF----LERMSQMYEIILFTASKKVYADKLLNILDPKKQLVRHRLFREHC 378
Query: 313 VCVKSGSRKSLLNVFQRGLCHPKMAMVIDDRCKVW 347
VCV+ K LN+ R L ++ID+ + +
Sbjct: 379 VCVQGNYIKD-LNILGRDLSK---TIIIDNSPQAF 409
>sp|Q3A4Q8|RNC_PELCD Ribonuclease 3 OS=Pelobacter carbinolicus (strain DSM 2380 / Gra Bd
1) GN=rnc PE=3 SV=1
Length = 232
Score = 40.4 bits (93), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 19/37 (51%), Positives = 25/37 (67%)
Query: 656 FSVEVLFTGEKIGVGMGKTRKDAQQQAAENALHYLAE 692
+SVE F G IG G G+++K A+Q AA+ AL YL E
Sbjct: 196 YSVEAHFRGSCIGQGQGRSKKSAEQAAAKQALEYLEE 232
>sp|Q8ER05|RNC_OCEIH Ribonuclease 3 OS=Oceanobacillus iheyensis (strain DSM 14371 / JCM
11309 / KCTC 3954 / HTE831) GN=rnc PE=3 SV=1
Length = 228
Score = 40.0 bits (92), Expect = 0.071, Method: Composition-based stats.
Identities = 22/60 (36%), Positives = 38/60 (63%), Gaps = 3/60 (5%)
Query: 631 LQE-IGKRCSSKVEFRSVVST--SKDLQFSVEVLFTGEKIGVGMGKTRKDAQQQAAENAL 687
LQE + + K+E+R + S + +F EV+ + G+G G+T+K+A+Q+AA+NAL
Sbjct: 163 LQEFVQQHKDQKIEYRIIEEKGPSHNKEFVAEVVIQEKAAGIGTGRTKKEAEQRAAKNAL 222
>sp|Q5F3Z7|CTSL2_CHICK CTD small phosphatase-like protein 2 OS=Gallus gallus GN=CTDSPL2
PE=2 SV=2
Length = 466
Score = 40.0 bits (92), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 49/95 (51%), Gaps = 8/95 (8%)
Query: 253 VLVRLRPAWEDLRSYLIAKGRKRFEVYVCTMAERDYALEMWRLLDPEGHLIGSKQLLDRV 312
V VRLRP + + + + + +E+ + T +++ YA ++ +LDP+ L+ + +
Sbjct: 324 VYVRLRPFFREF----LERMSQIYEIILFTASKKVYADKLLNILDPKKQLVRHRLFREHC 379
Query: 313 VCVKSGSRKSLLNVFQRGLCHPKMAMVIDDRCKVW 347
VCV+ K LN+ R L ++ID+ + +
Sbjct: 380 VCVQGNYIKD-LNILGRDLSK---TIIIDNSPQAF 410
>sp|Q9N4V4|SCPL3_CAEEL CTD small phosphatase-like protein 3 OS=Caenorhabditis elegans
GN=scpl-3 PE=3 SV=1
Length = 287
Score = 39.7 bits (91), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 49/96 (51%), Gaps = 8/96 (8%)
Query: 247 ENRDTSVLVRLRPAWEDLRSYLIAKGRKRFEVYVCTMAERDYALEMWRLLDPEGHLIGSK 306
+N V VRLRP LR++L ++ K FE+ + T +++ YA ++ +LDP + I +
Sbjct: 95 QNITYQVYVRLRP---HLRTFL-SRMAKTFEIIIFTASKKVYANKLCDILDPRKNHIRHR 150
Query: 307 QLLDRVVCVKSGSRKSLLNVFQRGLCHPKMAMVIDD 342
+ VCV K L + R P M++D+
Sbjct: 151 LFREHCVCVFGNYVKD-LTILGRD---PSKTMILDN 182
>sp|Q08BB5|CTL2A_DANRE CTD small phosphatase-like protein 2-A OS=Danio rerio GN=ctdspl2a
PE=2 SV=1
Length = 469
Score = 39.7 bits (91), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 49/95 (51%), Gaps = 8/95 (8%)
Query: 253 VLVRLRPAWEDLRSYLIAKGRKRFEVYVCTMAERDYALEMWRLLDPEGHLIGSKQLLDRV 312
V VRLRP + + + + + +E+ + T +++ YA ++ +LDP+ L+ + +
Sbjct: 327 VYVRLRPFFREF----LERMSQIYEIILFTASKKVYADKLLNILDPKKQLVRHRLFREHC 382
Query: 313 VCVKSGSRKSLLNVFQRGLCHPKMAMVIDDRCKVW 347
VCV+ K LN+ R L ++ID+ + +
Sbjct: 383 VCVQGNYIKD-LNILGRDLSK---TVIIDNSPQAF 413
>sp|A4QNX6|CTL2B_DANRE CTD small phosphatase-like protein 2-B OS=Danio rerio GN=ctdspl2b
PE=2 SV=1
Length = 460
Score = 39.3 bits (90), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 46/90 (51%), Gaps = 8/90 (8%)
Query: 253 VLVRLRPAWEDLRSYLIAKGRKRFEVYVCTMAERDYALEMWRLLDPEGHLIGSKQLLDRV 312
V VRLRP + + + + + +E+ + T +++ YA ++ +LDP L+ + +
Sbjct: 318 VYVRLRPFFREF----LERMSQIYEIILFTASKKVYADKLLNILDPRKQLVRHRLFREHC 373
Query: 313 VCVKSGSRKSLLNVFQRGLCHPKMAMVIDD 342
VCV+ K LN+ R L ++ID+
Sbjct: 374 VCVQGNYIKD-LNILGRDLSK---TIIIDN 399
>sp|A0LGM1|RNC_SYNFM Ribonuclease 3 OS=Syntrophobacter fumaroxidans (strain DSM 10017 /
MPOB) GN=rnc PE=3 SV=1
Length = 242
Score = 38.9 bits (89), Expect = 0.15, Method: Composition-based stats.
Identities = 18/39 (46%), Positives = 25/39 (64%)
Query: 653 DLQFSVEVLFTGEKIGVGMGKTRKDAQQQAAENALHYLA 691
D F + V+ G+ + G GK++KDAQQ AAE AL +A
Sbjct: 197 DKTFHMNVVLEGQVLAGGSGKSKKDAQQAAAEKALQIIA 235
>sp|Q8SV03|FCP1_ENCCU RNA polymerase II subunit A C-terminal domain phosphatase
OS=Encephalitozoon cuniculi (strain GB-M1) GN=FCP1 PE=1
SV=1
Length = 411
Score = 38.9 bits (89), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 48/95 (50%), Gaps = 11/95 (11%)
Query: 255 VRLRPAWEDLRSYLIAKGRKRFEVYVCTMAERDYALEMWRLLDPEGHLIGSKQLLDRVVC 314
V+LRP + Y++ + K +E++V TM R YA + ++DP G K DR++
Sbjct: 96 VKLRPNLD----YMLRRISKLYEIHVYTMGTRAYAERIVEIIDPSG-----KYFDDRII- 145
Query: 315 VKSGSRKSLLNVFQRGLCHPKMAMVI-DDRCKVWE 348
+ ++ L+ R H +VI DDR VW+
Sbjct: 146 TRDENQGVLVKRLSRLFPHDHRNIVILDDRPDVWD 180
>sp|Q66KM5|CTSL2_XENTR CTD small phosphatase-like protein 2 OS=Xenopus tropicalis
GN=ctdspl2 PE=2 SV=1
Length = 466
Score = 38.9 bits (89), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 47/90 (52%), Gaps = 8/90 (8%)
Query: 253 VLVRLRPAWEDLRSYLIAKGRKRFEVYVCTMAERDYALEMWRLLDPEGHLIGSKQLLDRV 312
V VRLRP + + + + + +E+ + T +++ YA ++ +LDP+ L+ + +
Sbjct: 324 VYVRLRPFFREF----LERMSQIYEIILFTASKKVYADKLLNILDPKKRLVRHRLFREHC 379
Query: 313 VCVKSGSRKSLLNVFQRGLCHPKMAMVIDD 342
VCV+ K LN+ R L ++ID+
Sbjct: 380 VCVQGNYIKD-LNILGRDLSK---TIIIDN 405
>sp|Q3KQB6|CTL2B_XENLA CTD small phosphatase-like protein 2-B OS=Xenopus laevis
GN=ctdspl2-b PE=2 SV=1
Length = 466
Score = 38.9 bits (89), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 47/90 (52%), Gaps = 8/90 (8%)
Query: 253 VLVRLRPAWEDLRSYLIAKGRKRFEVYVCTMAERDYALEMWRLLDPEGHLIGSKQLLDRV 312
V VRLRP + + + + + +E+ + T +++ YA ++ +LDP+ L+ + +
Sbjct: 324 VYVRLRPFFREF----LERMSQIYEIILFTASKKVYADKLLNILDPKKRLVRHRLFREHC 379
Query: 313 VCVKSGSRKSLLNVFQRGLCHPKMAMVIDD 342
VCV+ K LN+ R L ++ID+
Sbjct: 380 VCVQGNYIKD-LNILGRDLSK---TIIIDN 405
>sp|A4J683|RNC_DESRM Ribonuclease 3 OS=Desulfotomaculum reducens (strain MI-1) GN=rnc
PE=3 SV=1
Length = 246
Score = 38.9 bits (89), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 27/38 (71%)
Query: 653 DLQFSVEVLFTGEKIGVGMGKTRKDAQQQAAENALHYL 690
D F+ V++ G+ IG G G ++K+A+QQAA++A +L
Sbjct: 194 DKTFTAGVIYKGKVIGKGSGHSKKEAEQQAAKDAFQHL 231
>sp|Q9KA05|RNC_BACHD Ribonuclease 3 OS=Bacillus halodurans (strain ATCC BAA-125 / DSM
18197 / FERM 7344 / JCM 9153 / C-125) GN=rnc PE=3 SV=1
Length = 263
Score = 38.9 bits (89), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 28/39 (71%)
Query: 655 QFSVEVLFTGEKIGVGMGKTRKDAQQQAAENALHYLAEK 693
+F EV+ E +GVG G+++K+A+Q AA+ AL L++K
Sbjct: 222 EFVSEVVLNNETLGVGTGRSKKEAEQHAAQQALITLSQK 260
>sp|Q801R4|CTL2A_XENLA CTD small phosphatase-like protein 2-A OS=Xenopus laevis
GN=ctdspl2-a PE=2 SV=1
Length = 466
Score = 38.5 bits (88), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 47/90 (52%), Gaps = 8/90 (8%)
Query: 253 VLVRLRPAWEDLRSYLIAKGRKRFEVYVCTMAERDYALEMWRLLDPEGHLIGSKQLLDRV 312
V VRLRP + + + + + +E+ + T +++ YA ++ +LDP+ L+ + +
Sbjct: 324 VYVRLRPFFREF----LERMSQIYEIILFTASKKVYADKLLNILDPKKRLVRHRLFREHC 379
Query: 313 VCVKSGSRKSLLNVFQRGLCHPKMAMVIDD 342
VCV+ K LN+ R L ++ID+
Sbjct: 380 VCVQGNYIKD-LNILGRDLSK---TIIIDN 405
>sp|B7GGE9|RNC_ANOFW Ribonuclease 3 OS=Anoxybacillus flavithermus (strain DSM 21510 /
WK1) GN=rnc PE=3 SV=1
Length = 238
Score = 38.5 bits (88), Expect = 0.24, Method: Composition-based stats.
Identities = 23/65 (35%), Positives = 41/65 (63%), Gaps = 3/65 (4%)
Query: 631 LQEIGKRCSSKV-EFRSVVS--TSKDLQFSVEVLFTGEKIGVGMGKTRKDAQQQAAENAL 687
LQE +R S V E++ + + + +F V GE++GVG+G+++K+A+Q+AA+ AL
Sbjct: 170 LQEFVQRDGSGVLEYKILQERGPAHNKEFVSRVSLNGEELGVGVGRSKKEAEQRAAQMAL 229
Query: 688 HYLAE 692
L +
Sbjct: 230 AKLKQ 234
>sp|P0DF15|RNC_STRPQ Ribonuclease 3 OS=Streptococcus pyogenes serotype M3 (strain SSI-1)
GN=rnc PE=3 SV=1
Length = 230
Score = 38.1 bits (87), Expect = 0.27, Method: Composition-based stats.
Identities = 17/38 (44%), Positives = 26/38 (68%)
Query: 655 QFSVEVLFTGEKIGVGMGKTRKDAQQQAAENALHYLAE 692
QF V ++ G + G+GK++K A+Q AA+NAL L+E
Sbjct: 192 QFEVSIVVNGAVLSKGLGKSKKLAEQDAAKNALAQLSE 229
>sp|Q1J7V3|RNC_STRPF Ribonuclease 3 OS=Streptococcus pyogenes serotype M4 (strain
MGAS10750) GN=rnc PE=3 SV=1
Length = 230
Score = 38.1 bits (87), Expect = 0.27, Method: Composition-based stats.
Identities = 17/38 (44%), Positives = 26/38 (68%)
Query: 655 QFSVEVLFTGEKIGVGMGKTRKDAQQQAAENALHYLAE 692
QF V ++ G + G+GK++K A+Q AA+NAL L+E
Sbjct: 192 QFEVSIVVNGAVLSKGLGKSKKLAEQDAAKNALAQLSE 229
>sp|Q1JMX4|RNC_STRPC Ribonuclease 3 OS=Streptococcus pyogenes serotype M12 (strain
MGAS9429) GN=rnc PE=3 SV=1
Length = 230
Score = 38.1 bits (87), Expect = 0.27, Method: Composition-based stats.
Identities = 17/38 (44%), Positives = 26/38 (68%)
Query: 655 QFSVEVLFTGEKIGVGMGKTRKDAQQQAAENALHYLAE 692
QF V ++ G + G+GK++K A+Q AA+NAL L+E
Sbjct: 192 QFEVSIVVNGAVLSKGLGKSKKLAEQDAAKNALAQLSE 229
>sp|Q1JCZ9|RNC_STRPB Ribonuclease 3 OS=Streptococcus pyogenes serotype M12 (strain
MGAS2096) GN=rnc PE=3 SV=1
Length = 230
Score = 38.1 bits (87), Expect = 0.27, Method: Composition-based stats.
Identities = 17/38 (44%), Positives = 26/38 (68%)
Query: 655 QFSVEVLFTGEKIGVGMGKTRKDAQQQAAENALHYLAE 692
QF V ++ G + G+GK++K A+Q AA+NAL L+E
Sbjct: 192 QFEVSIVVNGAVLSKGLGKSKKLAEQDAAKNALAQLSE 229
>sp|P66672|RNC_STRP8 Ribonuclease 3 OS=Streptococcus pyogenes serotype M18 (strain
MGAS8232) GN=rnc PE=3 SV=1
Length = 230
Score = 38.1 bits (87), Expect = 0.27, Method: Composition-based stats.
Identities = 17/38 (44%), Positives = 26/38 (68%)
Query: 655 QFSVEVLFTGEKIGVGMGKTRKDAQQQAAENALHYLAE 692
QF V ++ G + G+GK++K A+Q AA+NAL L+E
Sbjct: 192 QFEVSIVVNGAVLSKGLGKSKKLAEQDAAKNALAQLSE 229
>sp|P0DF14|RNC_STRP3 Ribonuclease 3 OS=Streptococcus pyogenes serotype M3 (strain ATCC
BAA-595 / MGAS315) GN=rnc PE=3 SV=1
Length = 230
Score = 38.1 bits (87), Expect = 0.27, Method: Composition-based stats.
Identities = 17/38 (44%), Positives = 26/38 (68%)
Query: 655 QFSVEVLFTGEKIGVGMGKTRKDAQQQAAENALHYLAE 692
QF V ++ G + G+GK++K A+Q AA+NAL L+E
Sbjct: 192 QFEVSIVVNGAVLSKGLGKSKKLAEQDAAKNALAQLSE 229
>sp|P66670|RNC_STRP1 Ribonuclease 3 OS=Streptococcus pyogenes serotype M1 GN=rnc PE=1
SV=1
Length = 230
Score = 38.1 bits (87), Expect = 0.27, Method: Composition-based stats.
Identities = 17/38 (44%), Positives = 26/38 (68%)
Query: 655 QFSVEVLFTGEKIGVGMGKTRKDAQQQAAENALHYLAE 692
QF V ++ G + G+GK++K A+Q AA+NAL L+E
Sbjct: 192 QFEVSIVVNGAVLSKGLGKSKKLAEQDAAKNALAQLSE 229
>sp|Q8LMR2|DCL1_ORYSJ Endoribonuclease Dicer homolog 1 OS=Oryza sativa subsp. japonica
GN=DCL1 PE=3 SV=1
Length = 1883
Score = 38.1 bits (87), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 37/74 (50%)
Query: 623 PSYLSIGVLQEIGKRCSSKVEFRSVVSTSKDLQFSVEVLFTGEKIGVGMGKTRKDAQQQA 682
P L + ++E+ +RC + E ++ +VEV G +IGV +K AQ+ A
Sbjct: 1706 PETLPMHPVRELQERCQQQAEGLEYKASRAGNIATVEVFVDGVQIGVAQNPQKKMAQKLA 1765
Query: 683 AENALHYLAEKYVA 696
A NAL L EK A
Sbjct: 1766 ARNALVVLKEKETA 1779
>sp|A4IM67|RNC_GEOTN Ribonuclease 3 OS=Geobacillus thermodenitrificans (strain NG80-2)
GN=rnc PE=3 SV=1
Length = 246
Score = 37.7 bits (86), Expect = 0.32, Method: Composition-based stats.
Identities = 15/36 (41%), Positives = 26/36 (72%)
Query: 655 QFSVEVLFTGEKIGVGMGKTRKDAQQQAAENALHYL 690
+F V G+++GVG+G+++K+A+Q AA+ AL L
Sbjct: 205 EFVARVALNGQELGVGVGRSKKEAEQHAAQMALETL 240
>sp|Q8LL04|CPL3_ARATH RNA polymerase II C-terminal domain phosphatase-like 3 OS=Arabidopsis
thaliana GN=CPL3 PE=1 SV=2
Length = 1241
Score = 37.7 bits (86), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 6/53 (11%)
Query: 255 VRLRPA-WEDLRSYLIAKGRKRFEVYVCTMAERDYALEMWRLLDPEGHLIGSK 306
+LRP W + K K +E+++ TM + YA EM +LLDP+G L +
Sbjct: 980 TKLRPGIWN-----FLEKASKLYELHLYTMGNKLYATEMAKLLDPKGVLFNGR 1027
>sp|Q65JQ5|RNC_BACLD Ribonuclease 3 OS=Bacillus licheniformis (strain DSM 13 / ATCC
14580) GN=rnc PE=3 SV=1
Length = 249
Score = 37.4 bits (85), Expect = 0.44, Method: Composition-based stats.
Identities = 16/41 (39%), Positives = 27/41 (65%)
Query: 655 QFSVEVLFTGEKIGVGMGKTRKDAQQQAAENALHYLAEKYV 695
+F V GE +GVG G+++K+A+Q AA+ AL L + ++
Sbjct: 207 EFEANVSLKGEVLGVGSGRSKKEAEQHAAQEALAKLQKHHM 247
>sp|C5D8T6|RNC_GEOSW Ribonuclease 3 OS=Geobacillus sp. (strain WCH70) GN=rnc PE=3 SV=1
Length = 246
Score = 37.4 bits (85), Expect = 0.48, Method: Composition-based stats.
Identities = 15/36 (41%), Positives = 26/36 (72%)
Query: 655 QFSVEVLFTGEKIGVGMGKTRKDAQQQAAENALHYL 690
+F V G+++G+G+GK++K+A+Q AA+ AL L
Sbjct: 205 EFVSRVSLNGQELGIGVGKSKKEAEQHAAQMALQKL 240
>sp|P66669|RNC_STAAW Ribonuclease 3 OS=Staphylococcus aureus (strain MW2) GN=rnc PE=3
SV=1
Length = 243
Score = 37.4 bits (85), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 26/37 (70%)
Query: 656 FSVEVLFTGEKIGVGMGKTRKDAQQQAAENALHYLAE 692
F+ EV+ GE I G GKT+K+++Q+AAE+A L +
Sbjct: 205 FTSEVILQGEAIAEGKGKTKKESEQRAAESAYKQLKQ 241
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.133 0.390
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 299,846,981
Number of Sequences: 539616
Number of extensions: 13028944
Number of successful extensions: 31486
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 31
Number of HSP's that attempted gapping in prelim test: 31344
Number of HSP's gapped (non-prelim): 160
length of query: 788
length of database: 191,569,459
effective HSP length: 126
effective length of query: 662
effective length of database: 123,577,843
effective search space: 81808532066
effective search space used: 81808532066
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 65 (29.6 bits)