Query 003896
Match_columns 788
No_of_seqs 336 out of 1310
Neff 3.8
Searched_HMMs 46136
Date Thu Mar 28 13:57:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003896.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003896hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0323 TFIIF-interacting CTD 100.0 9.8E-57 2.1E-61 506.2 12.8 526 32-695 4-548 (635)
2 TIGR02250 FCP1_euk FCP1-like p 99.9 3E-28 6.6E-33 235.0 10.3 102 250-364 52-156 (156)
3 TIGR02251 HIF-SF_euk Dullard-l 99.9 1.1E-22 2.4E-27 196.4 10.2 103 250-360 36-138 (162)
4 PF03031 NIF: NLI interacting 99.9 1.9E-22 4E-27 190.5 8.8 124 250-382 30-153 (159)
5 KOG1605 TFIIF-interacting CTD 99.9 2.8E-22 6E-27 208.8 5.2 134 250-394 125-258 (262)
6 TIGR02245 HAD_IIID1 HAD-superf 99.7 3.5E-16 7.6E-21 157.3 10.1 136 253-393 42-189 (195)
7 smart00577 CPDc catalytic doma 99.6 6.6E-16 1.4E-20 146.5 10.6 100 248-362 37-142 (148)
8 PHA02701 ORF020 dsRNA-binding 99.6 2.6E-15 5.7E-20 149.5 10.7 74 619-692 102-177 (183)
9 PHA03103 double-strand RNA-bin 99.5 3E-14 6.6E-19 142.3 10.2 71 621-692 105-177 (183)
10 cd00048 DSRM Double-stranded R 99.5 6.7E-14 1.4E-18 113.3 9.6 65 626-690 1-68 (68)
11 smart00358 DSRM Double-strande 99.5 1.1E-13 2.5E-18 112.4 9.3 64 627-690 1-66 (67)
12 PRK12371 ribonuclease III; Rev 99.5 8.8E-14 1.9E-18 143.1 10.4 68 625-692 161-231 (235)
13 PF00035 dsrm: Double-stranded 99.5 3.8E-13 8.2E-18 110.1 10.7 64 627-690 1-67 (67)
14 COG5190 FCP1 TFIIF-interacting 99.5 3.8E-14 8.2E-19 155.0 5.1 88 248-347 68-158 (390)
15 COG0571 Rnc dsRNA-specific rib 99.4 4.3E-13 9.4E-18 138.6 9.3 69 625-693 161-232 (235)
16 PRK14718 ribonuclease III; Pro 99.4 1.3E-12 2.8E-17 144.5 10.1 67 625-691 151-221 (467)
17 PRK12372 ribonuclease III; Rev 99.3 3.4E-12 7.3E-17 140.3 10.4 67 625-691 151-221 (413)
18 PRK00102 rnc ribonuclease III; 99.3 1.5E-11 3.2E-16 123.9 9.9 69 624-692 157-228 (229)
19 TIGR02191 RNaseIII ribonucleas 99.2 4.6E-11 9.9E-16 119.2 9.2 67 624-690 151-220 (220)
20 COG5190 FCP1 TFIIF-interacting 99.2 4.5E-11 9.7E-16 131.2 7.6 120 251-381 247-366 (390)
21 KOG3732 Staufen and related do 99.0 2.2E-09 4.7E-14 115.5 10.0 96 624-723 141-239 (339)
22 KOG3732 Staufen and related do 98.9 7.5E-09 1.6E-13 111.5 10.0 77 617-694 29-108 (339)
23 KOG2832 TFIIF-interacting CTD 98.8 2E-08 4.3E-13 109.3 8.5 155 248-415 206-371 (393)
24 PF14709 DND1_DSRM: double str 98.7 3.2E-08 6.9E-13 87.3 6.9 66 625-690 1-79 (80)
25 KOG1817 Ribonuclease [RNA proc 98.1 6.9E-06 1.5E-10 91.4 8.3 70 625-694 427-505 (533)
26 KOG4334 Uncharacterized conser 97.9 7.4E-06 1.6E-10 92.0 2.9 71 625-695 375-446 (650)
27 KOG2777 tRNA-specific adenosin 97.8 6.3E-05 1.4E-09 86.2 8.1 68 624-696 89-158 (542)
28 TIGR01685 MDP-1 magnesium-depe 97.7 0.00011 2.3E-09 73.5 7.6 102 254-358 43-154 (174)
29 TIGR01489 DKMTPPase-SF 2,3-dik 97.7 0.00044 9.6E-09 65.9 11.2 41 255-298 71-111 (188)
30 KOG3769 Ribonuclease III domai 97.4 9.8E-05 2.1E-09 79.4 3.6 71 622-692 229-303 (333)
31 TIGR01488 HAD-SF-IB Haloacid D 97.4 0.0006 1.3E-08 64.7 8.6 45 256-304 73-117 (177)
32 PLN02954 phosphoserine phospha 97.3 0.00077 1.7E-08 67.0 8.5 47 255-304 83-130 (224)
33 TIGR01509 HAD-SF-IA-v3 haloaci 97.3 0.0011 2.4E-08 62.8 9.1 78 255-344 84-167 (183)
34 TIGR01993 Pyr-5-nucltdase pyri 97.3 0.0015 3.3E-08 63.3 10.0 77 255-344 83-168 (184)
35 TIGR00338 serB phosphoserine p 97.2 0.0019 4.1E-08 64.0 9.7 86 255-344 84-178 (219)
36 TIGR03351 PhnX-like phosphonat 97.2 0.001 2.2E-08 66.0 7.5 81 255-344 86-173 (220)
37 TIGR01491 HAD-SF-IB-PSPlk HAD- 97.2 0.00078 1.7E-08 65.1 6.5 46 255-304 79-124 (201)
38 TIGR01681 HAD-SF-IIIC HAD-supe 97.1 0.00064 1.4E-08 63.8 5.3 86 256-344 29-118 (128)
39 TIGR01454 AHBA_synth_RP 3-amin 97.1 0.00068 1.5E-08 66.8 5.7 93 255-358 74-172 (205)
40 TIGR02253 CTE7 HAD superfamily 97.1 0.00037 8.1E-09 68.8 3.7 89 254-352 92-187 (221)
41 cd01427 HAD_like Haloacid deha 97.0 0.001 2.2E-08 58.2 5.2 40 255-297 23-62 (139)
42 TIGR01422 phosphonatase phosph 97.0 0.0054 1.2E-07 62.6 11.1 94 255-358 98-198 (253)
43 PLN03243 haloacid dehalogenase 97.0 0.0018 3.8E-08 68.0 7.5 94 255-358 108-206 (260)
44 TIGR01549 HAD-SF-IA-v1 haloaci 97.0 0.0047 1E-07 57.9 9.3 75 257-343 65-143 (154)
45 PRK13288 pyrophosphatase PpaX; 96.9 0.0082 1.8E-07 59.6 11.1 94 255-358 81-179 (214)
46 PRK13226 phosphoglycolate phos 96.9 0.005 1.1E-07 62.4 9.5 82 254-345 93-179 (229)
47 TIGR01548 HAD-SF-IA-hyp1 haloa 96.9 0.016 3.4E-07 57.1 12.6 78 257-344 107-188 (197)
48 PRK13222 phosphoglycolate phos 96.9 0.0097 2.1E-07 58.8 10.9 81 255-345 92-177 (226)
49 PRK11587 putative phosphatase; 96.8 0.0067 1.4E-07 60.8 9.8 92 254-357 81-178 (218)
50 PRK13225 phosphoglycolate phos 96.8 0.0051 1.1E-07 65.1 8.7 80 255-344 141-222 (273)
51 PLN02575 haloacid dehalogenase 96.7 0.012 2.5E-07 65.8 10.9 94 255-358 215-313 (381)
52 TIGR01533 lipo_e_P4 5'-nucleot 96.6 0.014 3.1E-07 62.2 10.3 78 259-344 121-198 (266)
53 PRK13223 phosphoglycolate phos 96.5 0.0036 7.9E-08 65.6 5.8 81 254-344 99-184 (272)
54 PRK06698 bifunctional 5'-methy 96.5 0.016 3.4E-07 65.1 10.9 91 254-357 328-423 (459)
55 TIGR01428 HAD_type_II 2-haloal 96.5 0.003 6.5E-08 61.8 4.5 78 256-344 92-175 (198)
56 PHA02597 30.2 hypothetical pro 96.3 0.012 2.5E-07 57.8 7.5 96 254-358 72-171 (197)
57 PRK09552 mtnX 2-hydroxy-3-keto 96.3 0.017 3.6E-07 58.2 8.5 39 255-296 73-111 (219)
58 TIGR01990 bPGM beta-phosphoglu 96.3 0.02 4.4E-07 54.8 8.7 78 255-344 86-168 (185)
59 TIGR02252 DREG-2 REG-2-like, H 96.2 0.066 1.4E-06 52.6 12.3 79 255-344 104-187 (203)
60 PRK13478 phosphonoacetaldehyde 96.2 0.046 9.9E-07 56.7 11.5 95 255-358 100-200 (267)
61 COG0546 Gph Predicted phosphat 96.2 0.024 5.2E-07 57.4 9.3 89 254-352 87-181 (220)
62 PRK10563 6-phosphogluconate ph 96.2 0.0022 4.8E-08 63.8 1.7 92 255-358 87-183 (221)
63 COG1011 Predicted hydrolase (H 96.2 0.0035 7.6E-08 61.8 3.0 76 262-345 102-182 (229)
64 COG4996 Predicted phosphatase 96.1 0.019 4.2E-07 56.5 7.7 88 253-352 38-138 (164)
65 KOG3109 Haloacid dehalogenase- 96.1 0.028 6E-07 59.2 9.1 82 254-345 96-189 (244)
66 PRK13582 thrH phosphoserine ph 96.0 0.026 5.6E-07 55.3 8.2 45 255-304 67-111 (205)
67 TIGR03333 salvage_mtnX 2-hydro 96.0 0.061 1.3E-06 54.1 10.8 47 255-304 69-115 (214)
68 PLN02940 riboflavin kinase 95.8 0.021 4.5E-07 63.2 7.2 81 255-345 92-178 (382)
69 PRK09456 ?-D-glucose-1-phospha 95.5 0.041 8.9E-07 54.4 7.5 83 254-345 82-169 (199)
70 PRK08238 hypothetical protein; 95.5 0.047 1E-06 62.6 8.8 85 256-359 72-166 (479)
71 TIGR01684 viral_ppase viral ph 95.4 0.033 7.2E-07 60.7 6.7 41 259-303 149-189 (301)
72 TIGR02247 HAD-1A3-hyp Epoxide 95.1 0.069 1.5E-06 52.9 7.4 84 254-345 92-180 (211)
73 COG0637 Predicted phosphatase/ 94.8 0.036 7.7E-07 56.7 4.7 83 255-345 85-170 (221)
74 TIGR01672 AphA HAD superfamily 94.7 0.15 3.2E-06 53.7 9.0 38 259-299 117-158 (237)
75 PRK11133 serB phosphoserine ph 94.7 0.21 4.5E-06 54.6 10.4 42 255-299 180-221 (322)
76 TIGR02137 HSK-PSP phosphoserin 94.7 0.066 1.4E-06 54.5 6.2 44 256-304 68-111 (203)
77 TIGR01686 FkbH FkbH-like domai 94.6 0.1 2.3E-06 56.1 7.9 81 258-345 33-114 (320)
78 PLN02919 haloacid dehalogenase 94.5 0.14 3E-06 63.9 9.5 82 257-347 162-248 (1057)
79 PHA02530 pseT polynucleotide k 94.5 0.064 1.4E-06 56.1 5.7 90 257-358 188-293 (300)
80 PHA03398 viral phosphatase sup 94.2 0.17 3.7E-06 55.4 8.3 38 259-299 151-188 (303)
81 PF03368 Dicer_dimer: Dicer di 94.1 0.31 6.6E-06 44.1 8.5 62 628-693 2-74 (90)
82 PF13419 HAD_2: Haloacid dehal 94.1 0.12 2.7E-06 47.6 6.2 80 254-344 75-160 (176)
83 PRK11590 hypothetical protein; 93.7 0.13 2.7E-06 52.0 6.0 40 255-297 94-134 (211)
84 COG0560 SerB Phosphoserine pho 93.7 0.15 3.1E-06 52.6 6.5 85 255-343 76-169 (212)
85 TIGR01664 DNA-3'-Pase DNA 3'-p 93.7 0.23 5E-06 49.0 7.6 87 257-356 43-157 (166)
86 PRK10748 flavin mononucleotide 92.8 0.17 3.6E-06 51.9 5.2 86 255-357 112-204 (238)
87 PRK11009 aphA acid phosphatase 92.7 0.41 8.8E-06 50.5 8.1 40 255-297 113-156 (237)
88 PLN02770 haloacid dehalogenase 91.5 0.34 7.4E-06 50.1 5.7 94 255-358 107-205 (248)
89 PF12689 Acid_PPase: Acid Phos 90.7 1.2 2.6E-05 45.1 8.5 88 253-344 42-134 (169)
90 TIGR01449 PGP_bact 2-phosphogl 90.6 0.63 1.4E-05 45.7 6.5 95 254-358 83-182 (213)
91 PF06888 Put_Phosphatase: Puta 89.6 1.4 2.9E-05 46.7 8.2 40 257-297 72-111 (234)
92 KOG0323 TFIIF-interacting CTD 89.2 0.87 1.9E-05 54.3 7.1 46 372-431 394-439 (635)
93 TIGR02254 YjjG/YfnB HAD superf 88.8 0.8 1.7E-05 45.1 5.7 91 254-356 95-193 (224)
94 PF00702 Hydrolase: haloacid d 88.8 4.9 0.00011 39.0 11.0 81 253-344 124-205 (215)
95 PRK14988 GMP/IMP nucleotidase; 88.8 0.98 2.1E-05 46.2 6.4 81 255-345 92-177 (224)
96 PF12710 HAD: haloacid dehalog 88.0 1.2 2.7E-05 42.7 6.2 33 266-299 96-129 (192)
97 PRK10826 2-deoxyglucose-6-phos 86.7 1 2.3E-05 45.1 5.1 93 255-357 91-188 (222)
98 PLN02779 haloacid dehalogenase 86.4 0.91 2E-05 48.4 4.7 96 255-358 143-243 (286)
99 smart00559 Ku78 Ku70 and Ku80 85.5 1.9 4.1E-05 41.7 6.0 87 32-122 33-124 (140)
100 PF11019 DUF2608: Protein of u 85.3 5.2 0.00011 42.5 9.7 73 273-345 95-189 (252)
101 PF06941 NT5C: 5' nucleotidase 85.2 1.8 3.8E-05 43.2 5.8 17 136-152 1-17 (191)
102 PRK09449 dUMP phosphatase; Pro 84.9 1.7 3.7E-05 43.4 5.6 90 255-356 94-191 (224)
103 TIGR01670 YrbI-phosphatas 3-de 84.8 3.6 7.9E-05 39.9 7.6 74 256-345 30-103 (154)
104 TIGR01691 enolase-ppase 2,3-di 84.5 1.9 4.1E-05 44.9 5.9 86 254-345 93-180 (220)
105 PF08282 Hydrolase_3: haloacid 84.1 0.9 1.9E-05 44.5 3.1 31 140-171 1-31 (254)
106 PRK03669 mannosyl-3-phosphogly 83.8 0.99 2.2E-05 47.1 3.5 34 137-171 7-40 (271)
107 PF05152 DUF705: Protein of un 83.5 1.7 3.7E-05 47.6 5.2 45 264-316 147-192 (297)
108 PF14954 LIX1: Limb expression 83.0 1.8 3.9E-05 45.9 4.9 61 624-689 20-94 (252)
109 cd00594 KU Ku-core domain; inc 82.3 4.2 9E-05 42.6 7.4 90 32-128 86-179 (272)
110 TIGR01261 hisB_Nterm histidino 82.0 3.4 7.4E-05 40.8 6.2 80 254-344 27-130 (161)
111 PRK09484 3-deoxy-D-manno-octul 81.3 4.3 9.4E-05 40.4 6.7 67 264-344 56-122 (183)
112 TIGR01485 SPP_plant-cyano sucr 81.3 1 2.2E-05 46.4 2.3 14 137-150 1-14 (249)
113 TIGR01482 SPP-subfamily Sucros 79.2 2.3 5E-05 42.3 4.0 30 140-171 1-31 (225)
114 KOG0921 Dosage compensation co 79.1 8.1 0.00018 48.2 9.1 66 626-691 2-69 (1282)
115 TIGR01662 HAD-SF-IIIA HAD-supe 79.0 5 0.00011 37.0 5.9 87 255-352 24-123 (132)
116 PRK10530 pyridoxal phosphate ( 78.7 3.2 6.9E-05 42.5 5.0 32 139-171 5-36 (272)
117 PRK15126 thiamin pyrimidine py 77.7 3 6.5E-05 43.3 4.5 32 139-171 4-35 (272)
118 TIGR00099 Cof-subfamily Cof su 77.2 3.1 6.7E-05 42.7 4.4 31 140-171 2-32 (256)
119 TIGR02009 PGMB-YQAB-SF beta-ph 76.2 3.4 7.4E-05 39.6 4.2 78 255-344 87-169 (185)
120 COG0561 Cof Predicted hydrolas 76.2 4.5 9.7E-05 41.7 5.3 32 137-169 3-34 (264)
121 PF02735 Ku: Ku70/Ku80 beta-ba 75.9 3 6.5E-05 42.0 3.8 87 32-122 80-172 (200)
122 PRK10725 fructose-1-P/6-phosph 75.8 1.7 3.6E-05 42.1 1.9 88 257-356 89-181 (188)
123 KOG3120 Predicted haloacid deh 75.6 6 0.00013 42.4 6.0 38 259-298 87-124 (256)
124 cd00788 KU70 Ku-core domain, K 75.3 8.4 0.00018 41.4 7.2 91 32-128 92-194 (287)
125 TIGR01656 Histidinol-ppas hist 74.9 7.5 0.00016 37.1 6.1 40 256-298 27-81 (147)
126 PF03767 Acid_phosphat_B: HAD 74.7 2.4 5.3E-05 44.2 2.9 17 135-152 70-86 (229)
127 PRK10513 sugar phosphate phosp 73.3 5.3 0.00011 41.2 4.9 31 139-171 5-36 (270)
128 TIGR01490 HAD-SF-IB-hyp1 HAD-s 73.3 3.3 7.2E-05 40.6 3.4 47 255-305 86-132 (202)
129 TIGR01484 HAD-SF-IIB HAD-super 73.0 5.6 0.00012 39.2 4.9 31 140-170 2-32 (204)
130 PTZ00174 phosphomannomutase; P 72.9 6.6 0.00014 40.8 5.5 33 137-171 5-38 (247)
131 TIGR02461 osmo_MPG_phos mannos 72.3 3.2 7E-05 42.8 3.1 30 140-171 2-31 (225)
132 PRK10725 fructose-1-P/6-phosph 71.9 1.9 4.1E-05 41.7 1.3 14 139-152 7-20 (188)
133 PRK01158 phosphoglycolate phos 71.3 4 8.6E-05 40.9 3.4 32 139-171 5-36 (230)
134 PRK12702 mannosyl-3-phosphogly 71.3 5.7 0.00012 43.9 4.8 66 139-211 3-70 (302)
135 TIGR01663 PNK-3'Pase polynucle 71.2 12 0.00025 44.2 7.6 75 258-344 199-294 (526)
136 TIGR00578 ku70 ATP-dependent D 70.7 10 0.00022 45.0 7.1 87 32-122 316-414 (584)
137 KOG2334 tRNA-dihydrouridine sy 70.5 1.5 3.2E-05 50.3 0.2 65 625-691 375-441 (477)
138 TIGR01675 plant-AP plant acid 70.1 2.8 6E-05 44.4 2.1 93 264-364 125-227 (229)
139 TIGR01689 EcbF-BcbF capsule bi 69.8 4.9 0.00011 38.9 3.5 13 139-151 3-15 (126)
140 PRK10976 putative hydrolase; P 67.3 5.1 0.00011 41.3 3.3 32 139-171 4-35 (266)
141 TIGR01493 HAD-SF-IA-v2 Haloaci 65.6 2.7 5.8E-05 40.3 0.8 73 255-344 89-166 (175)
142 PLN02811 hydrolase 65.3 8.1 0.00018 39.0 4.2 92 255-357 77-180 (220)
143 TIGR01493 HAD-SF-IA-v2 Haloaci 65.1 3.7 8E-05 39.3 1.7 15 139-153 1-15 (175)
144 PRK09449 dUMP phosphatase; Pro 64.1 3.9 8.5E-05 40.8 1.7 13 139-151 5-17 (224)
145 TIGR02463 MPGP_rel mannosyl-3- 63.2 6.7 0.00015 39.3 3.2 29 140-169 2-30 (221)
146 TIGR02009 PGMB-YQAB-SF beta-ph 62.8 3.6 7.9E-05 39.4 1.2 15 139-153 3-17 (185)
147 TIGR01662 HAD-SF-IIIA HAD-supe 62.1 8 0.00017 35.7 3.2 12 139-150 2-13 (132)
148 PRK06769 hypothetical protein; 62.0 17 0.00037 36.0 5.7 28 256-286 28-55 (173)
149 PLN02770 haloacid dehalogenase 61.7 3.9 8.5E-05 42.3 1.2 15 139-153 24-38 (248)
150 TIGR01544 HAD-SF-IE haloacid d 61.4 13 0.00028 40.6 5.1 47 255-304 120-169 (277)
151 PF13419 HAD_2: Haloacid dehal 59.8 4.6 0.0001 37.2 1.3 14 140-153 1-14 (176)
152 PLN02423 phosphomannomutase 59.8 13 0.00029 38.8 4.8 30 137-168 7-37 (245)
153 TIGR00213 GmhB_yaeD D,D-heptos 59.4 37 0.0008 33.3 7.5 29 255-286 25-53 (176)
154 TIGR02254 YjjG/YfnB HAD superf 59.1 4.5 9.8E-05 39.9 1.1 16 139-154 3-18 (224)
155 cd00873 KU80 Ku-core domain, K 58.2 27 0.00058 37.9 6.8 90 32-128 94-187 (300)
156 TIGR01449 PGP_bact 2-phosphogl 58.2 3.8 8.2E-05 40.3 0.4 13 140-152 1-13 (213)
157 PLN03017 trehalose-phosphatase 57.3 11 0.00023 42.7 3.8 33 117-149 89-123 (366)
158 TIGR01490 HAD-SF-IB-hyp1 HAD-s 57.3 4.2 9E-05 39.9 0.6 16 140-155 2-17 (202)
159 KOG1615 Phosphoserine phosphat 56.4 65 0.0014 34.4 8.9 49 257-308 89-138 (227)
160 PRK14988 GMP/IMP nucleotidase; 56.4 5.5 0.00012 40.8 1.2 14 138-151 11-24 (224)
161 KOG3792 Transcription factor N 56.2 9.3 0.0002 46.4 3.2 62 625-691 506-570 (816)
162 TIGR01487 SPP-like sucrose-pho 54.5 12 0.00027 37.4 3.4 30 139-170 3-33 (215)
163 TIGR01668 YqeG_hyp_ppase HAD s 54.3 23 0.00049 35.0 5.1 84 258-356 45-131 (170)
164 PLN02779 haloacid dehalogenase 52.8 7.3 0.00016 41.6 1.5 14 139-152 42-55 (286)
165 TIGR01486 HAD-SF-IIB-MPGP mann 51.6 12 0.00027 38.6 2.9 30 140-170 2-31 (256)
166 TIGR01456 CECR5 HAD-superfamil 51.4 13 0.00028 40.5 3.1 29 138-168 1-29 (321)
167 PRK10826 2-deoxyglucose-6-phos 51.4 7.6 0.00016 39.0 1.3 16 138-153 8-23 (222)
168 PLN02151 trehalose-phosphatase 51.1 17 0.00036 41.1 4.0 33 117-149 76-110 (354)
169 PLN02887 hydrolase family prot 50.5 15 0.00033 43.7 3.8 41 130-171 301-341 (580)
170 TIGR01656 Histidinol-ppas hist 50.2 16 0.00035 34.8 3.3 15 139-153 2-16 (147)
171 KOG2777 tRNA-specific adenosin 50.1 8.5 0.00018 45.5 1.6 45 642-692 10-56 (542)
172 PRK10187 trehalose-6-phosphate 50.0 14 0.00031 39.2 3.1 15 137-151 14-28 (266)
173 TIGR01680 Veg_Stor_Prot vegeta 50.0 10 0.00023 41.4 2.1 16 135-150 99-114 (275)
174 PRK00192 mannosyl-3-phosphogly 49.5 15 0.00033 38.5 3.2 31 138-169 5-35 (273)
175 PRK05446 imidazole glycerol-ph 48.9 53 0.0012 37.0 7.5 28 254-284 28-55 (354)
176 TIGR01459 HAD-SF-IIA-hyp4 HAD- 48.4 30 0.00065 35.7 5.1 40 257-299 25-66 (242)
177 PF02169 LPP20: LPP20 lipoprot 48.3 24 0.00053 30.8 3.9 32 664-695 12-43 (92)
178 PRK08942 D,D-heptose 1,7-bisph 48.1 60 0.0013 31.9 6.9 28 256-286 29-56 (181)
179 TIGR02244 HAD-IG-Ncltidse HAD 48.0 25 0.00053 39.5 4.7 43 252-297 180-223 (343)
180 COG2179 Predicted hydrolase of 47.9 12 0.00025 38.6 2.0 23 131-153 22-44 (175)
181 TIGR02471 sucr_syn_bact_C sucr 46.9 13 0.00028 37.9 2.2 23 140-164 2-24 (236)
182 TIGR00685 T6PP trehalose-phosp 46.4 22 0.00048 36.8 3.8 17 136-152 2-18 (244)
183 TIGR01457 HAD-SF-IIA-hyp2 HAD- 44.3 18 0.00038 37.9 2.7 31 139-171 3-33 (249)
184 PF05116 S6PP: Sucrose-6F-phos 43.7 23 0.0005 37.2 3.5 13 137-149 2-14 (247)
185 TIGR01458 HAD-SF-IIA-hyp3 HAD- 42.1 20 0.00044 37.7 2.8 89 259-352 123-216 (257)
186 smart00775 LNS2 LNS2 domain. T 41.6 25 0.00054 34.7 3.2 18 139-156 1-18 (157)
187 COG2503 Predicted secreted aci 39.8 13 0.00027 40.6 0.8 18 135-152 77-94 (274)
188 PLN02382 probable sucrose-phos 39.6 21 0.00045 40.6 2.6 19 133-151 5-23 (413)
189 PF13344 Hydrolase_6: Haloacid 38.3 35 0.00075 31.3 3.3 46 140-187 1-54 (101)
190 TIGR01545 YfhB_g-proteo haloac 35.9 18 0.0004 37.1 1.3 38 255-295 93-131 (210)
191 PRK10444 UMP phosphatase; Prov 35.6 31 0.00068 36.4 3.0 29 139-169 3-31 (248)
192 COG3882 FkbH Predicted enzyme 33.3 24 0.00052 41.7 1.8 23 130-152 215-237 (574)
193 PRK14502 bifunctional mannosyl 32.7 40 0.00088 41.3 3.6 36 135-171 414-449 (694)
194 PF02839 CBM_5_12: Carbohydrat 32.4 31 0.00067 26.6 1.8 21 196-216 9-29 (41)
195 PF08645 PNK3P: Polynucleotide 32.2 26 0.00056 34.7 1.6 17 139-155 2-18 (159)
196 TIGR01452 PGP_euk phosphoglyco 32.2 34 0.00074 36.2 2.6 29 139-169 4-32 (279)
197 KOG3792 Transcription factor N 30.7 23 0.00051 43.2 1.2 51 640-691 384-442 (816)
198 KOG2914 Predicted haloacid-hal 30.1 1.9E+02 0.0042 30.8 7.7 80 254-346 90-181 (222)
199 cd00789 KU_like Ku-core domain 27.9 1.6E+02 0.0035 31.8 6.8 78 32-122 84-163 (256)
200 TIGR00213 GmhB_yaeD D,D-heptos 23.8 73 0.0016 31.3 3.1 12 139-150 3-14 (176)
201 PF00333 Ribosomal_S5: Ribosom 23.7 77 0.0017 27.9 2.9 39 652-690 20-62 (67)
202 PTZ00445 p36-lilke protein; Pr 23.5 1.1E+02 0.0023 32.9 4.4 103 235-345 49-189 (219)
203 cd00036 ChtBD3 Chitin/cellulos 23.0 60 0.0013 25.0 1.8 19 196-214 7-25 (41)
204 PRK08942 D,D-heptose 1,7-bisph 22.6 47 0.001 32.6 1.5 14 139-152 5-18 (181)
205 TIGR01545 YfhB_g-proteo haloac 22.2 1.1E+02 0.0023 31.6 4.0 19 139-157 7-25 (210)
206 COG0647 NagD Predicted sugar p 21.8 94 0.002 33.9 3.7 40 137-178 8-54 (269)
207 PF09419 PGP_phosphatase: Mito 21.7 76 0.0016 32.4 2.8 21 134-154 38-58 (168)
208 KOG4334 Uncharacterized conser 20.2 2.4E+02 0.0053 33.8 6.6 61 627-691 492-557 (650)
209 PLN02645 phosphoglycolate phos 20.0 83 0.0018 34.1 2.8 33 131-166 23-55 (311)
No 1
>KOG0323 consensus TFIIF-interacting CTD phosphatases, including NLI-interacting factor [Transcription]
Probab=100.00 E-value=9.8e-57 Score=506.24 Aligned_cols=526 Identities=28% Similarity=0.346 Sum_probs=406.5
Q ss_pred CCCCceEEeeecCCCCCCCcchhhhhcccCceeeecCCCCC-CCchhHHHHHHHhhcccccEEEEeCCeeEEEEecCCCC
Q 003896 32 FPNNEIRIRHISPSSERCIPLSILHTISSFSLRCKLESSAP-VEQPHLINLHASCFYEFKTAVVVIGDEEIHLVAMPSKQ 110 (788)
Q Consensus 32 ~~~~~i~i~~~~~~~e~~~pl~~lh~~~~~~~~~~~~~~~~-~~~~~l~~lh~~~~~e~ktaVv~~~~~elhLva~~~~~ 110 (788)
.+.-++++.+||...|+|++++++-+++.++++++.+++.. ..+.-+..+++.|..+.++|||..+.++.|+|||.++.
T Consensus 4 ~~~~~~~~~~~~~~~e~~~~~a~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~e~~~v~~~~~~~~~v~~~~~~ 83 (635)
T KOG0323|consen 4 QPGPEERREAFSIVIERSPDLAELTALASGASDGVLESSDDSLVEKDLESFVAICRSKVEGAVVLLGRDLEKKVALISGV 83 (635)
T ss_pred cCCCcchhhhhhhhhccCcchhhhhhhhhhccccccccccccchhhcccchhheecccccchhhccccchhhhhcccccc
Confidence 45556999999999999999999999999999999998755 45777999999999999999999999999999999887
Q ss_pred CC-CceEeeeecCcchhHhHHHhhhccceEEEEeCCcceeecccccchHHHHHHHHHHhhcCCchhhhhchhHHHHHhhc
Q 003896 111 KK-FPCFWCYSVSSGLYNSCLGMLNLRCLAIVFDLDETLIVANTMKSFEDRIEALRSWIAREPDQIRASGMSAELKRYMD 189 (788)
Q Consensus 111 ~~-~p~F~~~~~~~g~y~~~~~lL~~r~L~lV~DLDeTLi~A~t~~~~e~ri~~l~~w~~~~~dP~~~~~~~~E~kr~~~ 189 (788)
-. .+|+|+|.|.-|+|+.|..+|+.+|...++||++|++.+++|..+.++|.++..||.+.. |+++++
T Consensus 84 ~~~~~~C~H~~v~~GlC~~Cg~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-----------L~lv~D 152 (635)
T KOG0323|consen 84 SSSTSCCEHFTVFGGLCASCGKDLESLQGRSFDYLVKGLQLSNEMVAFTKTLTTQFSSLNRKK-----------LHLVLD 152 (635)
T ss_pred ccccCCccceeecccHHHHHHHHHHHhhccchhcccchhhhhhhhhhhhhHHHHHHHHHhhhc-----------ceeehh
Confidence 55 599999999999999999999999999999999999999999999999999999997766 677888
Q ss_pred hHHHHHhhhccceeeeCCeEEEecccccCCCCCCccccccceeecCCCcceeeecCCCCCCceEEEEecCChHHHHHHHH
Q 003896 190 DRTLLKQYTENDCVMDNGKVFKVQQEEVPPPSENHERIVRPVIRIPERNLVLTRINPENRDTSVLVRLRPAWEDLRSYLI 269 (788)
Q Consensus 190 D~~lL~q~~~~d~V~~nG~~~~~q~E~v~~~~d~~~~~~RpviRl~~~n~~ltrI~P~~r~t~y~VKLRPgweeLreFL~ 269 (788)
+...|.+|+..+.+..+++-++.+.+.+ ..|..++||+|..+.++|||||||+ +.+||+
T Consensus 153 ld~tllh~~~~~~l~e~~~~l~~~~~~~------------------~sn~dl~~~~~~~~~~~~~vKlRP~---~~efL~ 211 (635)
T KOG0323|consen 153 LDHTLLHTILKSDLSETEKYLKEEAESV------------------ESNKDLFRFNPLGHDTEYLVKLRPF---VHEFLK 211 (635)
T ss_pred hhhHHHHhhccchhhhhhhhcccccccc------------------cccccceeecccCCCceEEEEeCcc---HHHHHH
Confidence 8889999999999999888877766655 3578899999999999999999999 778998
Q ss_pred HhccccEEEEEEeCCchHHHHHHHHhhCCCCCccccccccCceEeecCCC---cccHhhhcccCCCCCCeEEEEeCCccc
Q 003896 270 AKGRKRFEVYVCTMAERDYALEMWRLLDPEGHLIGSKQLLDRVVCVKSGS---RKSLLNVFQRGLCHPKMAMVIDDRCKV 346 (788)
Q Consensus 270 ak~sk~FElyVyTmgtR~YA~~IlrLLDPdgklF~~r~l~~RIisresg~---~KsL~rLf~~g~~d~~~VVIIDDR~dV 346 (788)
+++++|||||||||+|.||+.||++|||+|+||+ +||+||+.+. +++|..+|+ |+++||||||||.+|
T Consensus 212 -~~sklfemhVyTmg~R~YA~~i~~liDP~~~lF~-----dRIisrde~~~~kt~dL~~~~p---~g~smvvIIDDr~dV 282 (635)
T KOG0323|consen 212 -EANKLFEMHVYTMGTRDYALEIAKLIDPEGKYFG-----DRIISRDESPFFKTLDLVLLFP---CGDSMVVIIDDRSDV 282 (635)
T ss_pred -HHHhhceeEEEeccchHHHHHHHHHhCCCCcccc-----ceEEEecCCCcccccccccCCC---CCCccEEEEeCcccc
Confidence 8999999999999999999999999999999999 9999996643 556666666 899999999999999
Q ss_pred cccCCCCCeEEecCcCCCCCchhhhhcccchHHHHHHHhhhcchhhhhhhhHHHHHhhhhhhcccccCCCCCCCCccccc
Q 003896 347 WEDKDQPRVHVVPAFTPYYAPQAETANAVPVLCVARNVACNVRGCFFKEFDENLLRSISEVFYEDEAVNLPAAPDVSNYL 426 (788)
Q Consensus 347 W~~~~~NlI~VVp~Y~py~~~q~E~~~~~p~L~~a~~VL~~Vh~~fFk~~De~l~~rI~e~~~e~~~~~~~~~pdV~n~l 426 (788)
|.++++|+|.|. +|.|| ..+++.+.. |.++.+.+++|.+++.||+++|+.+..+|.++-|+++-.+.|..+++
T Consensus 283 W~~~~~nLI~i~-~y~yF-~~~gd~nap-~~~~~~~~~~~~~~~~~~k~~~~s~~~~~~~~~~~~~~~~~~~~~~~---- 355 (635)
T KOG0323|consen 283 WPDHKRNLIQIA-PYPYF-SGQGDINAP-PPLHVLRNVACSVRGAFFKEFDPSLKSRISEVRYEDDDESNPTSYSV---- 355 (635)
T ss_pred ccCCCcceEEee-eeecc-cCcccccCC-cccccccchhcccccccccccCcccccccccccccccccccCccccc----
Confidence 999998788765 46444 444443322 78999999999999999999999999999999999999999999998
Q ss_pred cccCCccCCCCCCCCCCCCCcchhHHHHhhcccCccccccCCCCCccCCCcccccCCCCceeeccCCCCCCcccCCCCCC
Q 003896 427 MSEDANFAPNGSTNAPMSEGLNGLEVERRLNQSDEKYVVDSGLPSMKNSSDLKSETSLLPVAVASNATVPATVVPSQKPG 506 (788)
Q Consensus 427 ~~e~~~~~~n~n~~~~~~~gm~~~everrl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 506 (788)
.+|+|.+++.+|||.+. . |+-
T Consensus 356 -------~~~~~~~p~~~~~~~~~------------~----------------~~~------------------------ 376 (635)
T KOG0323|consen 356 -------ELSANPGPLKQDGMDEF------------V----------------PEE------------------------ 376 (635)
T ss_pred -------ccccccCcccccccccc------------c----------------ccc------------------------
Confidence 57888889999999987 0 000
Q ss_pred CCCCCcccCCcccccCcccCCCCCCCCCCCccCCCCCeeeeccccccCCCCCCccccCCCCCCCcccccch----hhhhh
Q 003896 507 LLGAPIRRDNSSMKHGFDLRNQNSAQPPLPKLHGQGGWIVEEEVNRVLPNNRPVSIATGLPSHASQAKGEE----AIMAH 582 (788)
Q Consensus 507 ~~~~p~~~~~~~~~hg~d~r~~~~~~~~~p~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~ 582 (788)
-+| +.+..++++.-++.... +++| ..-..+..+.|+.||.+.. ....-
T Consensus 377 --~~~---~~~~~s~~~~~~de~~~---------------D~~L--------~~~~kvl~~vH~~ff~~~~~~~e~~~~~ 428 (635)
T KOG0323|consen 377 --NAP---EARSGSYREKKSDESDE---------------DGEL--------ANLLKVLKPVHKGFFAKYDEVEETLESP 428 (635)
T ss_pred --cch---hhccccccccccccccc---------------chhH--------HHHhhhhcccchhhhhccccccccccCC
Confidence 000 00011222222332210 0110 0013456677888888643 22222
Q ss_pred hhcccCCCCCCCCCcccccccccCCCCccccccCcc----------ccCCCCCChHHHHHHHHHhCCCCceEEEEeeeCC
Q 003896 583 DLHKQNLPPASQPPEIGVSQNHVSSNSREFLTEGGK----------TNLLPSYLSIGVLQEIGKRCSSKVEFRSVVSTSK 652 (788)
Q Consensus 583 ~~~~~~~~~~~~~~e~~~~~n~~~~~~~~f~~ee~~----------~~~~ps~dyKS~LQE~~QK~~~~peYelveesGH 652 (788)
|. ++.+|+ .....-..+.++++...+.+...+.. ....+. -..-.++.++.+++....|+.......
T Consensus 429 Dv-r~~i~~-~~~~v~~~~~~vfSg~~P~~~~~~~s~~~~~~~~~g~vs~~~-~~~~~th~i~~~~gt~k~~~a~~~~~~ 505 (635)
T KOG0323|consen 429 DV-RLLIPE-LRTKVLKGSQIVFSGLHPTGSTDESADILGVAQQLGAVSAPD-VSDKTTHLIAANAGTKKVYKAVVSGSA 505 (635)
T ss_pred Ch-hhhhhh-hhhHHhhccceeecccccCcCCcchhhhhhhhhcccceeccc-ccchhhhHHhhccCcceeeccccccce
Confidence 22 222222 22233344446666655554432210 000111 223346777777777677766433213
Q ss_pred CceEEEEEEECCeEeEEEecCCHHHHHHHHHHHHHHHHHHhhh
Q 003896 653 DLQFSVEVLFTGEKIGVGMGKTRKDAQQQAAENALHYLAEKYV 695 (788)
Q Consensus 653 ~~~FtveV~I~Gkk~G~G~GsSKKEAEQ~AAK~AL~~L~~~yl 695 (788)
.-.|...+|--.+++|.|.++.++.+-..+|......+...|.
T Consensus 506 ~Vv~~~wl~~~~e~w~~v~ek~~~l~~~~~~~~~~~~~a~~~~ 548 (635)
T KOG0323|consen 506 KVVNAAWLWRSLEKWGKVEEKLEPLDDDQRAAIRRESLARLYE 548 (635)
T ss_pred eEechhHHHHHHHHhcchhcccccccccccchhcccchhhhhh
Confidence 3345666777788999999999999999998888877776554
No 2
>TIGR02250 FCP1_euk FCP1-like phosphatase, phosphatase domain. This domain is related to domains found in the human NLI interacting factor-like phosphatases, and together both are detected by the Pfam model pfam03031.
Probab=99.95 E-value=3e-28 Score=235.01 Aligned_cols=102 Identities=32% Similarity=0.602 Sum_probs=90.0
Q ss_pred CceEEEEecCChHHHHHHHHHhccccEEEEEEeCCchHHHHHHHHhhCCCCCccccccccCceEeecC---CCcccHhhh
Q 003896 250 DTSVLVRLRPAWEDLRSYLIAKGRKRFEVYVCTMAERDYALEMWRLLDPEGHLIGSKQLLDRVVCVKS---GSRKSLLNV 326 (788)
Q Consensus 250 ~t~y~VKLRPgweeLreFL~ak~sk~FElyVyTmgtR~YA~~IlrLLDPdgklF~~r~l~~RIisres---g~~KsL~rL 326 (788)
.+.+++++||| +.+||+ +++++||++|||++.+.||..|++.|||++.+|+ +||+++++ ...|+|+++
T Consensus 52 ~~~~~v~~rPg---v~efL~-~l~~~yel~I~T~~~~~yA~~vl~~ldp~~~~F~-----~ri~~rd~~~~~~~KdL~~i 122 (156)
T TIGR02250 52 TMWYLTKLRPF---LHEFLK-EASKLYEMHVYTMGTRAYAQAIAKLIDPDGKYFG-----DRIISRDESGSPHTKSLLRL 122 (156)
T ss_pred CeEEEEEECCC---HHHHHH-HHHhhcEEEEEeCCcHHHHHHHHHHhCcCCCeec-----cEEEEeccCCCCccccHHHH
Confidence 56799999999 778998 8899999999999999999999999999999998 67777755 248999999
Q ss_pred cccCCCCCCeEEEEeCCccccccCCCCCeEEecCcCCC
Q 003896 327 FQRGLCHPKMAMVIDDRCKVWEDKDQPRVHVVPAFTPY 364 (788)
Q Consensus 327 f~~g~~d~~~VVIIDDR~dVW~~~~~NlI~VVp~Y~py 364 (788)
++ ++.++||||||+++||..++.|+|+|. +|.||
T Consensus 123 ~~---~d~~~vvivDd~~~~~~~~~~N~i~i~-~~~~f 156 (156)
T TIGR02250 123 FP---ADESMVVIIDDREDVWPWHKRNLIQIE-PYNYF 156 (156)
T ss_pred cC---CCcccEEEEeCCHHHhhcCccCEEEeC-CcccC
Confidence 97 489999999999999999999888865 56554
No 3
>TIGR02251 HIF-SF_euk Dullard-like phosphatase domain. This domain is related to domains found in FCP1-like phosphatases (TIGR02250), and together both are detected by the Pfam model pfam03031.
Probab=99.88 E-value=1.1e-22 Score=196.36 Aligned_cols=103 Identities=19% Similarity=0.236 Sum_probs=88.1
Q ss_pred CceEEEEecCChHHHHHHHHHhccccEEEEEEeCCchHHHHHHHHhhCCCCCccccccccCceEeecCCCcccHhhhccc
Q 003896 250 DTSVLVRLRPAWEDLRSYLIAKGRKRFEVYVCTMAERDYALEMWRLLDPEGHLIGSKQLLDRVVCVKSGSRKSLLNVFQR 329 (788)
Q Consensus 250 ~t~y~VKLRPgweeLreFL~ak~sk~FElyVyTmgtR~YA~~IlrLLDPdgklF~~r~l~~RIisresg~~KsL~rLf~~ 329 (788)
...+||++||| +.+||+ +++++|||+|||+|++.||..|++.|||.+.+|.++.+++.+...+....|+|+.+..
T Consensus 36 ~~~~~v~~RPg---l~eFL~-~l~~~yei~I~Ts~~~~yA~~il~~ldp~~~~f~~~l~r~~~~~~~~~~~K~L~~l~~- 110 (162)
T TIGR02251 36 IIPVYVFKRPH---VDEFLE-RVSKWYELVIFTASLEEYADPVLDILDRGGKVISRRLYRESCVFTNGKYVKDLSLVGK- 110 (162)
T ss_pred EEEEEEEECCC---HHHHHH-HHHhcCEEEEEcCCcHHHHHHHHHHHCcCCCEEeEEEEccccEEeCCCEEeEchhcCC-
Confidence 34799999999 888998 7889999999999999999999999999999999777666554444335899998765
Q ss_pred CCCCCCeEEEEeCCccccccCCCCCeEEecC
Q 003896 330 GLCHPKMAMVIDDRCKVWEDKDQPRVHVVPA 360 (788)
Q Consensus 330 g~~d~~~VVIIDDR~dVW~~~~~NlI~VVp~ 360 (788)
+++.+|||||++..|..++.|+|.++++
T Consensus 111 ---~~~~vIiVDD~~~~~~~~~~NgI~i~~f 138 (162)
T TIGR02251 111 ---DLSKVIIIDNSPYSYSLQPDNAIPIKSW 138 (162)
T ss_pred ---ChhhEEEEeCChhhhccCccCEeecCCC
Confidence 6899999999999999999989986553
No 4
>PF03031 NIF: NLI interacting factor-like phosphatase; InterPro: IPR004274 The function of this domain is unclear. It is found in proteins of diverse function including phosphatases some of which may be active in active in ternary elongation complexes and a number of NLI interacting factors. In the phospatases this domain is often present N-terminal to the BRCT domain (IPR001357 from INTERPRO).; GO: 0005515 protein binding; PDB: 3L0Y_A 2GHQ_A 3PGL_A 3L0C_B 1TA0_A 2GHT_A 3L0B_B 1T9Z_A 3QLE_A 2Q5E_E ....
Probab=99.87 E-value=1.9e-22 Score=190.52 Aligned_cols=124 Identities=25% Similarity=0.353 Sum_probs=85.9
Q ss_pred CceEEEEecCChHHHHHHHHHhccccEEEEEEeCCchHHHHHHHHhhCCCCCccccccccCceEeecCCCcccHhhhccc
Q 003896 250 DTSVLVRLRPAWEDLRSYLIAKGRKRFEVYVCTMAERDYALEMWRLLDPEGHLIGSKQLLDRVVCVKSGSRKSLLNVFQR 329 (788)
Q Consensus 250 ~t~y~VKLRPgweeLreFL~ak~sk~FElyVyTmgtR~YA~~IlrLLDPdgklF~~r~l~~RIisresg~~KsL~rLf~~ 329 (788)
...++|++||| +.+||+ .+++.|||+|||+|++.||..|++.|||++.+|.++.+++++...+++..|+|+.+..
T Consensus 30 ~~~~~v~~RP~---l~~FL~-~l~~~~ev~i~T~~~~~ya~~v~~~ldp~~~~~~~~~~r~~~~~~~~~~~KdL~~l~~- 104 (159)
T PF03031_consen 30 RGGYYVKLRPG---LDEFLE-ELSKHYEVVIWTSASEEYAEPVLDALDPNGKLFSRRLYRDDCTFDKGSYIKDLSKLGR- 104 (159)
T ss_dssp EEEEEEEE-TT---HHHHHH-HHHHHCEEEEE-SS-HHHHHHHHHHHTTTTSSEEEEEEGGGSEEETTEEE--GGGSSS-
T ss_pred ccceeEeeCch---HHHHHH-HHHHhceEEEEEeehhhhhhHHHHhhhhhccccccccccccccccccccccchHHHhh-
Confidence 45789999999 888998 7899999999999999999999999999999998776666654444334799998854
Q ss_pred CCCCCCeEEEEeCCccccccCCCCCeEEecCcCCCCCchhhhhcccchHHHHH
Q 003896 330 GLCHPKMAMVIDDRCKVWEDKDQPRVHVVPAFTPYYAPQAETANAVPVLCVAR 382 (788)
Q Consensus 330 g~~d~~~VVIIDDR~dVW~~~~~NlI~VVp~Y~py~~~q~E~~~~~p~L~~a~ 382 (788)
+.+.+|||||++.+|..+++|.|. |++|.+....+.++....++|..+.
T Consensus 105 ---~~~~vvivDD~~~~~~~~~~N~i~-v~~f~~~~~~D~~L~~l~~~L~~l~ 153 (159)
T PF03031_consen 105 ---DLDNVVIVDDSPRKWALQPDNGIP-VPPFFGDTPNDRELLRLLPFLEELA 153 (159)
T ss_dssp ----GGGEEEEES-GGGGTTSGGGEEE-----SSCHTT--HHHHHHHHHHHHH
T ss_pred ---ccccEEEEeCCHHHeeccCCceEE-eccccCCCcchhHHHHHHHHHHHhC
Confidence 689999999999999999886666 4556433212334444444553333
No 5
>KOG1605 consensus TFIIF-interacting CTD phosphatase, including NLI-interacting factor (involved in RNA polymerase II regulation) [Transcription]
Probab=99.85 E-value=2.8e-22 Score=208.81 Aligned_cols=134 Identities=19% Similarity=0.259 Sum_probs=117.9
Q ss_pred CceEEEEecCChHHHHHHHHHhccccEEEEEEeCCchHHHHHHHHhhCCCCCccccccccCceEeecCCCcccHhhhccc
Q 003896 250 DTSVLVRLRPAWEDLRSYLIAKGRKRFEVYVCTMAERDYALEMWRLLDPEGHLIGSKQLLDRVVCVKSGSRKSLLNVFQR 329 (788)
Q Consensus 250 ~t~y~VKLRPgweeLreFL~ak~sk~FElyVyTmgtR~YA~~IlrLLDPdgklF~~r~l~~RIisresg~~KsL~rLf~~ 329 (788)
.+.+||+.||| +.+||. +++++||+.|||++...||..|+++|||++++|.+|.+|+.|++.+.+..|+|..+..
T Consensus 125 ~~~~yV~kRP~---vdeFL~-~~s~~~e~v~FTAs~~~Ya~~v~D~LD~~~~i~~~RlyR~~C~~~~g~yvKdls~~~~- 199 (262)
T KOG1605|consen 125 IHQVYVRKRPH---VDEFLS-RVSKWYELVLFTASLEVYADPLLDILDPDRKIISHRLYRDSCTLKDGNYVKDLSVLGR- 199 (262)
T ss_pred ceEEEEEcCCC---HHHHHH-HhHHHHHHHHHHhhhHHHHHHHHHHccCCCCeeeeeecccceEeECCcEEEEcceecc-
Confidence 34699999999 899999 9999999999999999999999999999999999999988887777777999976654
Q ss_pred CCCCCCeEEEEeCCccccccCCCCCeEEecCcCCCCCchhhhhcccchHHHHHHHhhhcchhhhh
Q 003896 330 GLCHPKMAMVIDDRCKVWEDKDQPRVHVVPAFTPYYAPQAETANAVPVLCVARNVACNVRGCFFK 394 (788)
Q Consensus 330 g~~d~~~VVIIDDR~dVW~~~~~NlI~VVp~Y~py~~~q~E~~~~~p~L~~a~~VL~~Vh~~fFk 394 (788)
+.+.|+||||.+..+..|++|.|+|.+||. ...+.|+.+..|+|+.+..+ .+||...-+
T Consensus 200 ---dL~~viIiDNsP~sy~~~p~NgIpI~sw~~--d~~D~eLL~LlpfLe~L~~~-~Dvr~~l~~ 258 (262)
T KOG1605|consen 200 ---DLSKVIIVDNSPQSYRLQPENGIPIKSWFD--DPTDTELLKLLPFLEALAFV-DDVRPILAR 258 (262)
T ss_pred ---CcccEEEEcCChHHhccCccCCCccccccc--CCChHHHHHHHHHHHHhccc-ccHHHHHHH
Confidence 799999999999999999999999988772 33467788999999988877 888776544
No 6
>TIGR02245 HAD_IIID1 HAD-superfamily subfamily IIID hydrolase, TIGR02245. This family of sequences appears to belong to the Haloacid Dehalogenase (HAD) superfamily of enzymes by virtue of the presence of three catalytic domains, in this case: LLVLD(ILV)D(YH)T, I(VMG)IWS, and (DN)(VC)K(PA)Lx{15-17}T(IL)(MH)(FV)DD(IL)(GRS)(RK)N. Since this family has no large "cap" domain between motifs 1 and 2 or between 2 and 3, it is formally a "class III" HAD.
Probab=99.65 E-value=3.5e-16 Score=157.30 Aligned_cols=136 Identities=13% Similarity=0.075 Sum_probs=91.6
Q ss_pred EEEEecCChHHHHHHHHHhccccEEEEEEeCCchHHHHHHHHhhCCCCC-ccccccccCceEe-----ecCC--CcccHh
Q 003896 253 VLVRLRPAWEDLRSYLIAKGRKRFEVYVCTMAERDYALEMWRLLDPEGH-LIGSKQLLDRVVC-----VKSG--SRKSLL 324 (788)
Q Consensus 253 y~VKLRPgweeLreFL~ak~sk~FElyVyTmgtR~YA~~IlrLLDPdgk-lF~~r~l~~RIis-----resg--~~KsL~ 324 (788)
+++..||| |.+||+ .++++|||+|||+++..||+.+++.|++.+. .|.-+.+.+++.+ ...| ..|+|+
T Consensus 42 ~~~~kRP~---l~eFL~-~~~~~feIvVwTAa~~~ya~~~l~~l~~~~~~~~~i~~~ld~~~~~~~~~~~~g~~~vKdL~ 117 (195)
T TIGR02245 42 GEELMRPY---LHEFLT-SAYEDYDIVIWSATSMKWIEIKMTELGVLTNPNYKITFLLDSTAMITVHTPRRGKFDVKPLG 117 (195)
T ss_pred ceEEeCCC---HHHHHH-HHHhCCEEEEEecCCHHHHHHHHHHhcccCCccceEEEEeccccceeeEeeccCcEEEeecH
Confidence 36789999 899999 8999999999999999999999999876432 1221122233311 1223 389999
Q ss_pred hhcccCC--CCCCeEEEEeCCccccccCCCCCeEEecCcCC-CCC-chhhhhcccchHHHHHHHhhhcchhhh
Q 003896 325 NVFQRGL--CHPKMAMVIDDRCKVWEDKDQPRVHVVPAFTP-YYA-PQAETANAVPVLCVARNVACNVRGCFF 393 (788)
Q Consensus 325 rLf~~g~--~d~~~VVIIDDR~dVW~~~~~NlI~VVp~Y~p-y~~-~q~E~~~~~p~L~~a~~VL~~Vh~~fF 393 (788)
.++..-+ .+.+.+|||||.+.....+|+|+|++.|++.- ... .+.|+....+.|..+.. ..+|+..-.
T Consensus 118 ~lw~~l~~~~~~~ntiiVDd~p~~~~~~P~N~i~I~~f~~~~~~~~~D~eL~~L~~yL~~la~-~~Dvr~~~~ 189 (195)
T TIGR02245 118 VIWALLPEFYSMKNTIMFDDLRRNFLMNPQNGLKIRPFKKAHANRGTDQELLKLTQYLKTIAE-LEDFSSLDH 189 (195)
T ss_pred HhhhhcccCCCcccEEEEeCCHHHHhcCCCCccccCCccccCCCCcccHHHHHHHHHHHHHhc-Ccccchhhh
Confidence 8865211 26789999999999999999999987654310 011 23444555555555554 355554433
No 7
>smart00577 CPDc catalytic domain of ctd-like phosphatases.
Probab=99.64 E-value=6.6e-16 Score=146.46 Aligned_cols=100 Identities=23% Similarity=0.275 Sum_probs=79.4
Q ss_pred CCCceEEEEecCChHHHHHHHHHhccccEEEEEEeCCchHHHHHHHHhhCCCCCccccccccCceEeecCC------Ccc
Q 003896 248 NRDTSVLVRLRPAWEDLRSYLIAKGRKRFEVYVCTMAERDYALEMWRLLDPEGHLIGSKQLLDRVVCVKSG------SRK 321 (788)
Q Consensus 248 ~r~t~y~VKLRPgweeLreFL~ak~sk~FElyVyTmgtR~YA~~IlrLLDPdgklF~~r~l~~RIisresg------~~K 321 (788)
.+...+++++||| +.+||+ .+.+.|++.|||++.+.||..+++.||+...+|. +|++.++. ..|
T Consensus 37 ~~~~~~~v~l~pG---~~e~L~-~L~~~~~l~I~Ts~~~~~~~~il~~l~~~~~~f~------~i~~~~d~~~~KP~~~k 106 (148)
T smart00577 37 GHPHGVYVKKRPG---VDEFLK-RASELFELVVFTAGLRMYADPVLDLLDPKKYFGY------RRLFRDECVFVKGKYVK 106 (148)
T ss_pred CceEEEEEEECCC---HHHHHH-HHHhccEEEEEeCCcHHHHHHHHHHhCcCCCEee------eEEECccccccCCeEee
Confidence 3455799999999 666666 5667899999999999999999999999764444 56666443 256
Q ss_pred cHhhhcccCCCCCCeEEEEeCCccccccCCCCCeEEecCcC
Q 003896 322 SLLNVFQRGLCHPKMAMVIDDRCKVWEDKDQPRVHVVPAFT 362 (788)
Q Consensus 322 sL~rLf~~g~~d~~~VVIIDDR~dVW~~~~~NlI~VVp~Y~ 362 (788)
.|+++. ++++.+|+|||++..|..+++|+|.+. +|.
T Consensus 107 ~l~~l~----~~p~~~i~i~Ds~~~~~aa~~ngI~i~-~f~ 142 (148)
T smart00577 107 DLSLLG----RDLSNVIIIDDSPDSWPFHPENLIPIK-PWF 142 (148)
T ss_pred cHHHcC----CChhcEEEEECCHHHhhcCccCEEEec-CcC
Confidence 777663 479999999999999999998888764 454
No 8
>PHA02701 ORF020 dsRNA-binding PKR inhibitor; Provisional
Probab=99.61 E-value=2.6e-15 Score=149.46 Aligned_cols=74 Identities=20% Similarity=0.282 Sum_probs=66.7
Q ss_pred ccCCCCCChHHHHHHHHHhCCCCceEEEEeeeC--CCceEEEEEEECCeEeEEEecCCHHHHHHHHHHHHHHHHHH
Q 003896 619 TNLLPSYLSIGVLQEIGKRCSSKVEFRSVVSTS--KDLQFSVEVLFTGEKIGVGMGKTRKDAQQQAAENALHYLAE 692 (788)
Q Consensus 619 ~~~~ps~dyKS~LQE~~QK~~~~peYelveesG--H~~~FtveV~I~Gkk~G~G~GsSKKEAEQ~AAK~AL~~L~~ 692 (788)
+..+...||||.||||||+++..+.|+++.+.| |.+.|+++|+|+|+.+|+|.|+|||+|||+||+.||+.|..
T Consensus 102 i~~~k~~DpKS~LQE~~Q~~~~~l~Y~li~~~GpdH~~~Ftv~V~V~g~~~g~G~G~SKKeAEQ~AAk~AL~~L~~ 177 (183)
T PHA02701 102 VMRLKTLNPVSAVNEFCMRTHRPLEFCETRSGGHDHCPLFTCTIVVSGKVVATASGCSKKLARHAACADALTILIN 177 (183)
T ss_pred hhcCCCCCccHHHHHHHHhcCCCCeEEEEEeECCCCCceEEEEEEECCEEEEEEEeCCHHHHHHHHHHHHHHHHHh
Confidence 344556899999999999995555999998888 99999999999999999999999999999999999999854
No 9
>PHA03103 double-strand RNA-binding protein; Provisional
Probab=99.53 E-value=3e-14 Score=142.27 Aligned_cols=71 Identities=21% Similarity=0.265 Sum_probs=62.5
Q ss_pred CCCCCChHHHHHHHHHhCCCCceEEEEeeeC--CCceEEEEEEECCeEeEEEecCCHHHHHHHHHHHHHHHHHH
Q 003896 621 LLPSYLSIGVLQEIGKRCSSKVEFRSVVSTS--KDLQFSVEVLFTGEKIGVGMGKTRKDAQQQAAENALHYLAE 692 (788)
Q Consensus 621 ~~ps~dyKS~LQE~~QK~~~~peYelveesG--H~~~FtveV~I~Gkk~G~G~GsSKKEAEQ~AAK~AL~~L~~ 692 (788)
.+-..|||++||||||+++... |.++.+.| |.+.|+++|+|+|+.+|+|.|+|||+|||+||+.||..|..
T Consensus 105 d~K~kNpKS~LQE~~Qk~~~~~-y~~i~~~Gp~H~p~F~v~V~I~g~~~g~G~G~SKKeAEQ~AAk~AL~~L~~ 177 (183)
T PHA03103 105 SWKDKNPCTVINEYCQITSRDW-SINITSSGPSHSPTFTASVIISGIKFKPAIGSTKKEAKNNAAKLAMDKILN 177 (183)
T ss_pred ccccCChhHHHHHHHHHhCCCe-EEEEEeeCCCCCceEEEEEEECCEEEEEeeeCCHHHHHHHHHHHHHHHHHh
Confidence 3445799999999999996555 55566677 99999999999999999999999999999999999999854
No 10
>cd00048 DSRM Double-stranded RNA binding motif. Binding is not sequence specific but is highly specific for double stranded RNA. Found in a variety of proteins including dsRNA dependent protein kinase PKR, RNA helicases, Drosophila staufen protein, E. coli RNase III, RNases H1, and dsRNA dependent adenosine deaminases.
Probab=99.52 E-value=6.7e-14 Score=113.29 Aligned_cols=65 Identities=34% Similarity=0.464 Sum_probs=60.4
Q ss_pred ChHHHHHHHHHhC-CCCceEEEEeeeC--CCceEEEEEEECCeEeEEEecCCHHHHHHHHHHHHHHHH
Q 003896 626 LSIGVLQEIGKRC-SSKVEFRSVVSTS--KDLQFSVEVLFTGEKIGVGMGKTRKDAQQQAAENALHYL 690 (788)
Q Consensus 626 dyKS~LQE~~QK~-~~~peYelveesG--H~~~FtveV~I~Gkk~G~G~GsSKKEAEQ~AAK~AL~~L 690 (788)
|||+.|+||||++ +..|.|+++...| |.+.|++.|.|+|+.+++|.|+|||+||+.||+.||..|
T Consensus 1 ~p~~~L~e~~~~~~~~~~~y~~~~~~g~~~~~~f~~~v~i~~~~~~~g~g~sKk~Ak~~AA~~al~~L 68 (68)
T cd00048 1 NPKSLLQELAQKRGKPLPEYELVEEEGPDHAPRFTVEVTVGGKITGEGEGSSKKEAKQNAAEAALRKL 68 (68)
T ss_pred ChHHHHHHHHHHcCCCCCeEEEeeeeCCCCCCeEEEEEEECCEEEEEeecCCHHHHHHHHHHHHHHhC
Confidence 6899999999999 7899999976666 889999999999999999999999999999999999865
No 11
>smart00358 DSRM Double-stranded RNA binding motif.
Probab=99.50 E-value=1.1e-13 Score=112.44 Aligned_cols=64 Identities=34% Similarity=0.479 Sum_probs=59.6
Q ss_pred hHHHHHHHHHhCCCCceEEEEeeeC--CCceEEEEEEECCeEeEEEecCCHHHHHHHHHHHHHHHH
Q 003896 627 SIGVLQEIGKRCSSKVEFRSVVSTS--KDLQFSVEVLFTGEKIGVGMGKTRKDAQQQAAENALHYL 690 (788)
Q Consensus 627 yKS~LQE~~QK~~~~peYelveesG--H~~~FtveV~I~Gkk~G~G~GsSKKEAEQ~AAK~AL~~L 690 (788)
||+.|+||||+++..|+|++....| |.+.|++.|.|+|+.+++|.|.|||+||++||+.||..|
T Consensus 1 p~~~L~e~~~~~~~~~~y~~~~~~g~~~~~~f~~~v~i~~~~~~~g~g~sKk~Ak~~AA~~al~~L 66 (67)
T smart00358 1 PKSLLQELAQKRGLPPEYELVKEEGPDHAPRFTVTVKVGGEYTGEGEGSSKKEAKQRAAEAALRSL 66 (67)
T ss_pred CchHHHHHHHHCCCCCEEEEEeeeCCCCCCcEEEEEEECCEEEEEeccCCHHHHHHHHHHHHHHhc
Confidence 5899999999997799999987666 889999999999999999999999999999999999876
No 12
>PRK12371 ribonuclease III; Reviewed
Probab=99.49 E-value=8.8e-14 Score=143.10 Aligned_cols=68 Identities=26% Similarity=0.255 Sum_probs=63.9
Q ss_pred CChHHHHHHHHHhC-CCCceEEEEeeeC--CCceEEEEEEECCeEeEEEecCCHHHHHHHHHHHHHHHHHH
Q 003896 625 YLSIGVLQEIGKRC-SSKVEFRSVVSTS--KDLQFSVEVLFTGEKIGVGMGKTRKDAQQQAAENALHYLAE 692 (788)
Q Consensus 625 ~dyKS~LQE~~QK~-~~~peYelveesG--H~~~FtveV~I~Gkk~G~G~GsSKKEAEQ~AAK~AL~~L~~ 692 (788)
.|||+.||||||++ +..|+|+++.+.| |.+.|+|+|+|+|+.+|+|.|+|||+|||.||+.||++|..
T Consensus 161 ~d~Ks~LqE~~q~~~~~~p~Y~~~~~~Gp~h~~~F~v~v~v~~~~~~~g~G~sKK~Ae~~AA~~al~~~~~ 231 (235)
T PRK12371 161 RDAKTELQEWAHAQFGVTPVYRVDSRSGPDHDPRFTVEVEVKGFAPETGEGRSKRAAEQVAAEKMLEREGV 231 (235)
T ss_pred CCHHHHHHHHHHhcCCCCCeEEEEEeecCCCCCeEEEEEEECCEEEEEeeeCCHHHHHHHHHHHHHHHhhh
Confidence 59999999999998 7789999998878 99999999999999999999999999999999999999853
No 13
>PF00035 dsrm: Double-stranded RNA binding motif; InterPro: IPR001159 The DsRBD domain is found in a variety of RNA-binding proteins with different structures and exhibiting a diversity of functions []. It is involved in localisation of at least five different mRNAs in the early Drosophila embryo and by interferon-induced protein kinase in humans, which is part of the cellular response to dsRNA.; GO: 0003725 double-stranded RNA binding, 0005622 intracellular; PDB: 1EKZ_A 1STU_A 1QU6_A 2L2M_A 3ADJ_A 1WHN_A 3LLH_B 2B7V_A 2L3J_A 1UHZ_A ....
Probab=99.47 E-value=3.8e-13 Score=110.08 Aligned_cols=64 Identities=27% Similarity=0.376 Sum_probs=58.0
Q ss_pred hHHHHHHHHHhCCCCceEEEEeeeC--CC-ceEEEEEEECCeEeEEEecCCHHHHHHHHHHHHHHHH
Q 003896 627 SIGVLQEIGKRCSSKVEFRSVVSTS--KD-LQFSVEVLFTGEKIGVGMGKTRKDAQQQAAENALHYL 690 (788)
Q Consensus 627 yKS~LQE~~QK~~~~peYelveesG--H~-~~FtveV~I~Gkk~G~G~GsSKKEAEQ~AAK~AL~~L 690 (788)
||+.|+||||+.+..|.|......+ |. +.|+++|+|+|..+|.|.|+|||+||+.||+.||..|
T Consensus 1 ~~~~L~e~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~i~~~~~~~g~g~sKk~Ak~~AA~~al~~L 67 (67)
T PF00035_consen 1 PKSRLNEYCQKNKFPPPYYYIEEEGPSHHRPRFICTVYIDGKEYGEGEGSSKKEAKQQAAKKALQKL 67 (67)
T ss_dssp HHHHHHHHHHHCTSSEEEEEEEEESSSSSSEEEEEEEEETTEEEEEEEESSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCCCCEEEEEEeCCCCCCceEEEEEEECCEEEeEeccCCHHHHHHHHHHHHHHhC
Confidence 6999999999998888888765554 44 8999999999999999999999999999999999886
No 14
>COG5190 FCP1 TFIIF-interacting CTD phosphatases, including NLI-interacting factor [Transcription]
Probab=99.46 E-value=3.8e-14 Score=155.01 Aligned_cols=88 Identities=35% Similarity=0.632 Sum_probs=81.1
Q ss_pred CCCceEEEEecCChHHHHHHHHHhccccEEEEEEeCCchHHHHHHHHhhCCCCCccccccccCceEeecC-C--CcccHh
Q 003896 248 NRDTSVLVRLRPAWEDLRSYLIAKGRKRFEVYVCTMAERDYALEMWRLLDPEGHLIGSKQLLDRVVCVKS-G--SRKSLL 324 (788)
Q Consensus 248 ~r~t~y~VKLRPgweeLreFL~ak~sk~FElyVyTmgtR~YA~~IlrLLDPdgklF~~r~l~~RIisres-g--~~KsL~ 324 (788)
...|.|++|.||. +..|+. .++++||+++||||++.||..+++++||.|++|+ +|+..++. + ..|++.
T Consensus 68 ~~~~~~~~k~~~~---l~~~~~-~i~~~~e~~~~~~~~~~~~~~~~~i~d~~g~~~~-----d~~~~~~~~~~~~~~s~~ 138 (390)
T COG5190 68 QEKCAYYVKARPK---LFPFLT-KISPLYELHIYTMGTRAYAERIAKIIDPTGKLFN-----DRILSRDESGSLSQKSLS 138 (390)
T ss_pred cccccceeeeccc---ccchhh-hhchhcceeeEeeccccchhhhhhcccccccccc-----cccccccccccchhhhhh
Confidence 4578899999999 999998 8999999999999999999999999999999999 88888743 3 289999
Q ss_pred hhcccCCCCCCeEEEEeCCcccc
Q 003896 325 NVFQRGLCHPKMAMVIDDRCKVW 347 (788)
Q Consensus 325 rLf~~g~~d~~~VVIIDDR~dVW 347 (788)
++|+ ++.+++||+||+.++|
T Consensus 139 ~l~p---~~~n~~vi~~d~~~~~ 158 (390)
T COG5190 139 RLFP---KDQNMVVIIDDRGDVW 158 (390)
T ss_pred hcCc---cccccccccccccccC
Confidence 9999 6899999999999999
No 15
>COG0571 Rnc dsRNA-specific ribonuclease [Transcription]
Probab=99.42 E-value=4.3e-13 Score=138.59 Aligned_cols=69 Identities=36% Similarity=0.454 Sum_probs=65.7
Q ss_pred CChHHHHHHHHHhC-CCCceEEEEeeeC--CCceEEEEEEECCeEeEEEecCCHHHHHHHHHHHHHHHHHHh
Q 003896 625 YLSIGVLQEIGKRC-SSKVEFRSVVSTS--KDLQFSVEVLFTGEKIGVGMGKTRKDAQQQAAENALHYLAEK 693 (788)
Q Consensus 625 ~dyKS~LQE~~QK~-~~~peYelveesG--H~~~FtveV~I~Gkk~G~G~GsSKKEAEQ~AAK~AL~~L~~~ 693 (788)
.|||+.||||+|+. ...|.|+++..+| |++.|+++|+++|+.+|+|.|+|||+|||.||++||+.|...
T Consensus 161 ~D~Kt~LQe~~q~~~~~~p~Y~~v~~~g~~h~~~F~v~v~v~~~~~g~G~G~skk~AEq~AA~~al~~l~~~ 232 (235)
T COG0571 161 KDPKTRLQELLQAQGLVLPEYRLVKEEGPAHDKEFTVEVAVGGKELGTGKGRSKKEAEQAAAEQALKKLGVK 232 (235)
T ss_pred cChhHHHHHHHHhcCCCCCeEEEeeccCCCCCceEEEEEEECCeeEEEecccCHHHHHHHHHHHHHHHhccc
Confidence 69999999999999 7789999999888 999999999999999999999999999999999999998653
No 16
>PRK14718 ribonuclease III; Provisional
Probab=99.37 E-value=1.3e-12 Score=144.54 Aligned_cols=67 Identities=25% Similarity=0.235 Sum_probs=62.6
Q ss_pred CChHHHHHHHHHhC-CCCceEEEEeeeC--CCceEEEEEEECCe-EeEEEecCCHHHHHHHHHHHHHHHHH
Q 003896 625 YLSIGVLQEIGKRC-SSKVEFRSVVSTS--KDLQFSVEVLFTGE-KIGVGMGKTRKDAQQQAAENALHYLA 691 (788)
Q Consensus 625 ~dyKS~LQE~~QK~-~~~peYelveesG--H~~~FtveV~I~Gk-k~G~G~GsSKKEAEQ~AAK~AL~~L~ 691 (788)
.|||+.||||||++ +..|+|+++.++| |.+.|+++|+|+|+ .+|+|+|+|||+|||.||+.||++|.
T Consensus 151 kDyKS~LQE~~Qk~~~~~PeY~li~esGPdH~k~F~V~V~v~g~~~~G~G~G~SKKeAEQ~AAk~AL~kL~ 221 (467)
T PRK14718 151 KDAKTLLQEYLQGHKIALPTYTVVATHGAAHNQQFEVECTVPKLDIKVSGSGASRRAAEQAAAKKALDEVT 221 (467)
T ss_pred cCHHHHHHHHHHhcCCCCCeeEEeeeecCCCCCeEEEEEEECCeeeEEEEEcCCHHHHHHHHHHHHHHHhc
Confidence 59999999999999 6679999998888 99999999999996 45899999999999999999999997
No 17
>PRK12372 ribonuclease III; Reviewed
Probab=99.34 E-value=3.4e-12 Score=140.30 Aligned_cols=67 Identities=25% Similarity=0.230 Sum_probs=62.5
Q ss_pred CChHHHHHHHHHhC-CCCceEEEEeeeC--CCceEEEEEEECCe-EeEEEecCCHHHHHHHHHHHHHHHHH
Q 003896 625 YLSIGVLQEIGKRC-SSKVEFRSVVSTS--KDLQFSVEVLFTGE-KIGVGMGKTRKDAQQQAAENALHYLA 691 (788)
Q Consensus 625 ~dyKS~LQE~~QK~-~~~peYelveesG--H~~~FtveV~I~Gk-k~G~G~GsSKKEAEQ~AAK~AL~~L~ 691 (788)
.|||+.||||||++ ...|+|+++.+.| |++.|+++|+|+|. .+|+|.|+|||+|||+||+.||++|.
T Consensus 151 ~D~KS~LQE~~Q~~~~~~P~Y~lv~e~Gp~h~~~F~V~V~v~g~~~~g~G~G~SKKeAEQ~AAr~AL~kL~ 221 (413)
T PRK12372 151 KDAKTLLQEYLQGHKIALPTYTVVATHGAAHNQQFEVECTVPKLDVKVSGSGASRRAAEQAAAKKALDEVM 221 (413)
T ss_pred CCHHHHHHHHHHhcCCCCCeeEEeeeecCCCCceEEEEEEECCeEEEEEEEeCCHHHHHHHHHHHHHHHHh
Confidence 58999999999999 6679999998888 99999999999995 56899999999999999999999997
No 18
>PRK00102 rnc ribonuclease III; Reviewed
Probab=99.27 E-value=1.5e-11 Score=123.86 Aligned_cols=69 Identities=33% Similarity=0.408 Sum_probs=63.5
Q ss_pred CCChHHHHHHHHHhC-CCCceEEEEeeeC--CCceEEEEEEECCeEeEEEecCCHHHHHHHHHHHHHHHHHH
Q 003896 624 SYLSIGVLQEIGKRC-SSKVEFRSVVSTS--KDLQFSVEVLFTGEKIGVGMGKTRKDAQQQAAENALHYLAE 692 (788)
Q Consensus 624 s~dyKS~LQE~~QK~-~~~peYelveesG--H~~~FtveV~I~Gkk~G~G~GsSKKEAEQ~AAK~AL~~L~~ 692 (788)
..|||+.|+||||++ ...|+|+++.++| |.+.|+++|+++|+.+|+|.|.|||+||++||+.||+.|+.
T Consensus 157 ~~~pk~~L~e~~~~~~~~~p~y~~~~~~g~~~~~~f~~~v~i~~~~~~~g~g~skk~Ae~~AA~~Al~~l~~ 228 (229)
T PRK00102 157 VKDYKTRLQELLQGRGLPLPEYELVKEEGPAHDKEFTVEVTVNGKELGEGTGSSKKEAEQAAAKQALKKLKE 228 (229)
T ss_pred cCCHHHHHHHHHHHcCCCCCceEEeeccCCCCCceEEEEEEECCEEEEEeeeCCHHHHHHHHHHHHHHHHhh
Confidence 359999999999999 4569999988777 88999999999999999999999999999999999999864
No 19
>TIGR02191 RNaseIII ribonuclease III, bacterial. This family consists of bacterial examples of ribonuclease III. This enzyme cleaves double-stranded rRNA. It is involved in processing ribosomal RNA precursors. It is found even in minimal genones such as Mycoplasma genitalium and Buchnera aphidicola, and in some cases has been shown to be an essential gene. These bacterial proteins contain a double-stranded RNA binding motif (pfam00035) and a ribonuclease III domain (pfam00636). Eukaryotic homologs tend to be much longer proteins with additional domains, localized to the nucleus, and not included in this family.
Probab=99.20 E-value=4.6e-11 Score=119.23 Aligned_cols=67 Identities=36% Similarity=0.435 Sum_probs=61.6
Q ss_pred CCChHHHHHHHHHhC-CCCceEEEEeeeC--CCceEEEEEEECCeEeEEEecCCHHHHHHHHHHHHHHHH
Q 003896 624 SYLSIGVLQEIGKRC-SSKVEFRSVVSTS--KDLQFSVEVLFTGEKIGVGMGKTRKDAQQQAAENALHYL 690 (788)
Q Consensus 624 s~dyKS~LQE~~QK~-~~~peYelveesG--H~~~FtveV~I~Gkk~G~G~GsSKKEAEQ~AAK~AL~~L 690 (788)
..|||+.||||||++ +..|+|+++...| |.+.|++.|+++|+.+|+|.|.|||+||++||+.||++|
T Consensus 151 ~~~pk~~L~e~~~~~~~~~p~y~~~~~~g~~~~~~f~~~v~~~~~~~~~g~g~skk~A~~~AA~~Al~~l 220 (220)
T TIGR02191 151 LKDYKTALQEWAQARGKPLPEYRLIKEEGPDHDKEFTVEVSVNGEPYGEGKGKSKKEAEQNAAKAALEKL 220 (220)
T ss_pred cCChHHHHHHHHHHcCCCCceEEEecccCCCCCceEEEEEEECCEEEEEeeeCCHHHHHHHHHHHHHHhC
Confidence 469999999999998 5579999987767 889999999999999999999999999999999999875
No 20
>COG5190 FCP1 TFIIF-interacting CTD phosphatases, including NLI-interacting factor [Transcription]
Probab=99.16 E-value=4.5e-11 Score=131.20 Aligned_cols=120 Identities=19% Similarity=0.196 Sum_probs=99.1
Q ss_pred ceEEEEecCChHHHHHHHHHhccccEEEEEEeCCchHHHHHHHHhhCCCCCccccccccCceEeecCCCcccHhhhcccC
Q 003896 251 TSVLVRLRPAWEDLRSYLIAKGRKRFEVYVCTMAERDYALEMWRLLDPEGHLIGSKQLLDRVVCVKSGSRKSLLNVFQRG 330 (788)
Q Consensus 251 t~y~VKLRPgweeLreFL~ak~sk~FElyVyTmgtR~YA~~IlrLLDPdgklF~~r~l~~RIisresg~~KsL~rLf~~g 330 (788)
+.+||..||+ +..||. .+++.|++++||.+.+.||+.|+++||+.+ .|.++.|+.+++..+....|+|..+..
T Consensus 247 ~~~~v~kRp~---l~~fl~-~ls~~~~l~~ft~s~~~y~~~v~d~l~~~k-~~~~~lfr~sc~~~~G~~ikDis~i~r-- 319 (390)
T COG5190 247 HLVYVSKRPE---LDYFLG-KLSKIHELVYFTASVKRYADPVLDILDSDK-VFSHRLFRESCVSYLGVYIKDISKIGR-- 319 (390)
T ss_pred eEEEEcCChH---HHHHHh-hhhhhEEEEEEecchhhhcchHHHhccccc-eeehhhhcccceeccCchhhhHHhhcc--
Confidence 5699999999 888998 899999999999999999999999999998 999999888876555446899998875
Q ss_pred CCCCCeEEEEeCCccccccCCCCCeEEecCcCCCCCchhhhhcccchHHHH
Q 003896 331 LCHPKMAMVIDDRCKVWEDKDQPRVHVVPAFTPYYAPQAETANAVPVLCVA 381 (788)
Q Consensus 331 ~~d~~~VVIIDDR~dVW~~~~~NlI~VVp~Y~py~~~q~E~~~~~p~L~~a 381 (788)
+...|+|||+++..|..+++|.|.+-+|+. ..-.++..+..++|..+
T Consensus 320 --~l~~viiId~~p~SY~~~p~~~i~i~~W~~--d~~d~el~~ll~~le~L 366 (390)
T COG5190 320 --SLDKVIIIDNSPASYEFHPENAIPIEKWIS--DEHDDELLNLLPFLEDL 366 (390)
T ss_pred --CCCceEEeeCChhhhhhCccceeccCcccc--cccchhhhhhccccccc
Confidence 689999999999999999998887666551 22344555555555443
No 21
>KOG3732 consensus Staufen and related double-stranded-RNA-binding proteins [Intracellular trafficking, secretion, and vesicular transport; Transcription]
Probab=98.96 E-value=2.2e-09 Score=115.50 Aligned_cols=96 Identities=20% Similarity=0.142 Sum_probs=73.9
Q ss_pred CCChHHHHHHHHHhC-CCCceEEEEeeeC--CCceEEEEEEECCeEeEEEecCCHHHHHHHHHHHHHHHHHHhhhcccCC
Q 003896 624 SYLSIGVLQEIGKRC-SSKVEFRSVVSTS--KDLQFSVEVLFTGEKIGVGMGKTRKDAQQQAAENALHYLAEKYVAYITP 700 (788)
Q Consensus 624 s~dyKS~LQE~~QK~-~~~peYelveesG--H~~~FtveV~I~Gkk~G~G~GsSKKEAEQ~AAK~AL~~L~~~yl~~~~~ 700 (788)
..|++++||||||+. +..|+|+++.+.| |.+.|+++|.+.+. ..+|.|.|||.|+++||+..|..|.-.-...+|.
T Consensus 141 ~~NPI~~L~e~~q~k~~k~P~yelv~E~G~~~~rEFv~q~sv~~~-~~~GkG~sKKiAKRnAAeamLe~l~~~~~~~~p~ 219 (339)
T KOG3732|consen 141 VLNPIGRLQELAQAKKWKLPEYELVQESGVPHRREFVIQCSVENF-TEEGKGPSKKIAKRNAAEAMLESLGFVKPNKTPE 219 (339)
T ss_pred ccChHHHHHHHHHHhCCCCCceEEEeccCCCccceEEEEEEecce-eeecCCchHHHHHHHHHHHHHHHhccCCCCcCcc
Confidence 369999999999999 8899999999999 99999999999885 5699999999999999999999985322211121
Q ss_pred CCCCCCcCCcccccccCCCcccc
Q 003896 701 RSGAMDRDFDKLSLENENGFLWD 723 (788)
Q Consensus 701 ~~g~~~~d~~k~~~~~~Ngf~~d 723 (788)
. ...+..+......+|.+|.
T Consensus 220 ~---~~~~~~~p~~~~~~~~~~~ 239 (339)
T KOG3732|consen 220 N---LKVSLLKPASGRALGCSDK 239 (339)
T ss_pred c---ccccccccccCcCCccCcc
Confidence 1 2223334444556666665
No 22
>KOG3732 consensus Staufen and related double-stranded-RNA-binding proteins [Intracellular trafficking, secretion, and vesicular transport; Transcription]
Probab=98.87 E-value=7.5e-09 Score=111.46 Aligned_cols=77 Identities=27% Similarity=0.248 Sum_probs=68.6
Q ss_pred ccccCCCC-CChHHHHHHHHHhCCCCceEEEEeeeC--CCceEEEEEEECCeEeEEEecCCHHHHHHHHHHHHHHHHHHh
Q 003896 617 GKTNLLPS-YLSIGVLQEIGKRCSSKVEFRSVVSTS--KDLQFSVEVLFTGEKIGVGMGKTRKDAQQQAAENALHYLAEK 693 (788)
Q Consensus 617 ~~~~~~ps-~dyKS~LQE~~QK~~~~peYelveesG--H~~~FtveV~I~Gkk~G~G~GsSKKEAEQ~AAK~AL~~L~~~ 693 (788)
.+++..+. +.+++.|||||.+.+..|.|+++.++| |.+.|++.|.++ +..+.|.|+|||.||+.||+++|..|+..
T Consensus 29 ~~~~~~~g~KS~IS~l~E~~~r~~~~v~fevl~eeGp~H~~~fv~rvtvg-~~~a~GeG~sKK~AKh~AA~~~L~~lk~l 107 (339)
T KOG3732|consen 29 VMLNADPGAKSPISLLQEYGLRRGLTPVYEVLREEGPPHMPNFVFRVTVG-EITATGEGKSKKLAKHRAAEALLKELKKL 107 (339)
T ss_pred cccccCcccCChHHHHHHHHHHhCCCcceeeeeccCCccCCCeEEEEEEe-eeEEecCCCchhHHHHHHHHHHHHHHhcC
Confidence 44555554 899999999999999999999999898 999999999996 68889999999999999999999999754
Q ss_pred h
Q 003896 694 Y 694 (788)
Q Consensus 694 y 694 (788)
.
T Consensus 108 ~ 108 (339)
T KOG3732|consen 108 P 108 (339)
T ss_pred C
Confidence 3
No 23
>KOG2832 consensus TFIIF-interacting CTD phosphatase, including NLI-interacting factor (involved in RNA polymerase II regulation) [Transcription]
Probab=98.75 E-value=2e-08 Score=109.33 Aligned_cols=155 Identities=17% Similarity=0.167 Sum_probs=117.3
Q ss_pred CCCceEEEEecCChHHHHHHHHHhccccEEEEEEeCCchHHHHHHHHhhCCCCCccccccccCceEeecCCCcccHhhhc
Q 003896 248 NRDTSVLVRLRPAWEDLRSYLIAKGRKRFEVYVCTMAERDYALEMWRLLDPEGHLIGSKQLLDRVVCVKSGSRKSLLNVF 327 (788)
Q Consensus 248 ~r~t~y~VKLRPgweeLreFL~ak~sk~FElyVyTmgtR~YA~~IlrLLDPdgklF~~r~l~~RIisresg~~KsL~rLf 327 (788)
...|.+-++.||| +.-||. .++++|||.|||...-.||.-+++-|||. .++.+++++++....++-..|||+.|-
T Consensus 206 s~~tGwRf~kRPg---vD~FL~-~~a~~yEIVi~sse~gmt~~pl~d~lDP~-g~IsYkLfr~~t~y~~G~HvKdls~LN 280 (393)
T KOG2832|consen 206 SYKTGWRFKKRPG---VDYFLG-HLAKYYEIVVYSSEQGMTVFPLLDALDPK-GYISYKLFRGATKYEEGHHVKDLSKLN 280 (393)
T ss_pred hhhcCceeccCch---HHHHHH-hhcccceEEEEecCCccchhhhHhhcCCc-ceEEEEEecCcccccCccchhhhhhhc
Confidence 3456788999999 888998 89999999999999999999999999999 577888888876555555699999886
Q ss_pred ccCCCCCCeEEEEeCCccccccCCCCCeEEecCcCCCCCchh-hhhcccchHHHH-HHHhhhcc--h-------hhhhhh
Q 003896 328 QRGLCHPKMAMVIDDRCKVWEDKDQPRVHVVPAFTPYYAPQA-ETANAVPVLCVA-RNVACNVR--G-------CFFKEF 396 (788)
Q Consensus 328 ~~g~~d~~~VVIIDDR~dVW~~~~~NlI~VVp~Y~py~~~q~-E~~~~~p~L~~a-~~VL~~Vh--~-------~fFk~~ 396 (788)
. |++.||+||=.......++.|-|.+.||= ...++ .+..+.++|..+ ++-+++|| - .+-++|
T Consensus 281 R----dl~kVivVd~d~~~~~l~P~N~l~l~~W~---Gn~dDt~L~dL~~FL~~ia~~~~eDvR~vL~~y~~~~D~~~~F 353 (393)
T KOG2832|consen 281 R----DLQKVIVVDFDANSYKLQPENMLPLEPWS---GNDDDTSLFDLLAFLEYIAQQQVEDVRPVLQSYSQEKDPAKEF 353 (393)
T ss_pred c----ccceeEEEEccccccccCcccccccCcCC---CCcccchhhhHHHHHHHHHHccHHHHHHHHHHhccccCHHHHH
Confidence 6 79999999999999999999887764421 23344 345666777654 55567777 2 334455
Q ss_pred hHHHHHhhhhhhcccccCC
Q 003896 397 DENLLRSISEVFYEDEAVN 415 (788)
Q Consensus 397 De~l~~rI~e~~~e~~~~~ 415 (788)
++. -+++.|..|+-+++-
T Consensus 354 ~~r-qk~l~eq~~~~~~~~ 371 (393)
T KOG2832|consen 354 RDR-QKKLQEQQYESELNE 371 (393)
T ss_pred HHH-HHHHHHHHHHHHhcc
Confidence 544 245566667666554
No 24
>PF14709 DND1_DSRM: double strand RNA binding domain from DEAD END PROTEIN 1
Probab=98.71 E-value=3.2e-08 Score=87.25 Aligned_cols=66 Identities=21% Similarity=0.268 Sum_probs=57.1
Q ss_pred CChHHHHHHHHHhC-CCCceEEEEeeeC--CCceEEEEEEECCeEeE---------EEec-CCHHHHHHHHHHHHHHHH
Q 003896 625 YLSIGVLQEIGKRC-SSKVEFRSVVSTS--KDLQFSVEVLFTGEKIG---------VGMG-KTRKDAQQQAAENALHYL 690 (788)
Q Consensus 625 ~dyKS~LQE~~QK~-~~~peYelveesG--H~~~FtveV~I~Gkk~G---------~G~G-sSKKEAEQ~AAK~AL~~L 690 (788)
++.++.|+|+|+|+ +..|.|++..+.| |.+.|++.|.|.+..+. .+.+ .+||+|+..||+.||..|
T Consensus 1 k~a~~~L~elC~k~~W~~P~y~l~~~~Gp~~~~~F~ykV~i~~~~~~~~~~~~~~~p~~~~~~~k~Ak~~AA~~~L~~L 79 (80)
T PF14709_consen 1 KSAVSLLNELCQKNKWGPPVYELVSESGPDHRKLFLYKVVIPGLEYPFEGSIECFGPTKPSSTKKEAKESAAQQALQAL 79 (80)
T ss_pred CCHHHHHHHHHHhcCCCCCeEEEEeccCCCccEEEEEEEEEcCCCCCCcceEEEccCCCcCccHHHHHHHHHHHHHHhc
Confidence 36789999999999 8999999987778 99999999999988762 1233 699999999999999887
No 25
>KOG1817 consensus Ribonuclease [RNA processing and modification]
Probab=98.11 E-value=6.9e-06 Score=91.37 Aligned_cols=70 Identities=23% Similarity=0.330 Sum_probs=61.8
Q ss_pred CChHHHHHHHHHhC-------CCCceEEEEeeeC--CCceEEEEEEECCeEeEEEecCCHHHHHHHHHHHHHHHHHHhh
Q 003896 625 YLSIGVLQEIGKRC-------SSKVEFRSVVSTS--KDLQFSVEVLFTGEKIGVGMGKTRKDAQQQAAENALHYLAEKY 694 (788)
Q Consensus 625 ~dyKS~LQE~~QK~-------~~~peYelveesG--H~~~FtveV~I~Gkk~G~G~GsSKKEAEQ~AAK~AL~~L~~~y 694 (788)
.|+|+.||.+|-.. ...|.|.++...| +.+.|.|.|+++|+.+|+|+|++.|+|+..||++||+.+...|
T Consensus 427 ndpkskLqq~cl~~rys~~~epdip~y~V~~~~gpa~~r~y~Vavyf~gkrlat~~G~nik~Ae~rAA~~ALe~~~~dF 505 (533)
T KOG1817|consen 427 NDPKSKLQQCCLTLRYSLGGEPDIPLYKVLGAKGPANDRNYKVAVYFKGKRLATGVGSNIKQAEMRAAMQALENLKMDF 505 (533)
T ss_pred cCcHHHHHHHHHHHhcccCCCCCCceEEEecccCCCCCCceEEEEEECCEEEeeccCchHhHHHHHHHHHHHHHHHhhh
Confidence 48899999999875 2347788888777 9999999999999999999999999999999999999997533
No 26
>KOG4334 consensus Uncharacterized conserved protein, contains double-stranded RNA-binding motif and WW domain [General function prediction only]
Probab=97.86 E-value=7.4e-06 Score=92.00 Aligned_cols=71 Identities=23% Similarity=0.301 Sum_probs=63.3
Q ss_pred CChHHHHHHHHHhC-CCCceEEEEeeeCCCceEEEEEEECCeEeEEEecCCHHHHHHHHHHHHHHHHHHhhh
Q 003896 625 YLSIGVLQEIGKRC-SSKVEFRSVVSTSKDLQFSVEVLFTGEKIGVGMGKTRKDAQQQAAENALHYLAEKYV 695 (788)
Q Consensus 625 ~dyKS~LQE~~QK~-~~~peYelveesGH~~~FtveV~I~Gkk~G~G~GsSKKEAEQ~AAK~AL~~L~~~yl 695 (788)
+.....|.||+|++ +..|.|+.-+.....-.|.+.|.+++..||+|+|.|||.|+..||+.+|++|...+.
T Consensus 375 ks~vCiLhEy~q~~lk~~pvyef~e~~n~stpysa~v~~d~~~yGsG~g~sKK~Ak~~AAR~tLeiLIPd~~ 446 (650)
T KOG4334|consen 375 KSKVCILHEYAQQCLKSLPVYEFAENDNNSTPYSAGVLPDLFPYGSGVGASKKTAKLVAARDTLEILIPDLR 446 (650)
T ss_pred ceeeehHHHHHHHHhhhcceeehhhccCCCCcccccccccccccccccccchHHHHHHHHHHHHHHhcchhh
Confidence 35679999999999 788999987666677889999999999999999999999999999999999975544
No 27
>KOG2777 consensus tRNA-specific adenosine deaminase 1 [RNA processing and modification]
Probab=97.75 E-value=6.3e-05 Score=86.23 Aligned_cols=68 Identities=25% Similarity=0.345 Sum_probs=61.3
Q ss_pred CCChHHHHHHHHHhCCCCceEEEEeeeC--CCceEEEEEEECCeEeEEEecCCHHHHHHHHHHHHHHHHHHhhhc
Q 003896 624 SYLSIGVLQEIGKRCSSKVEFRSVVSTS--KDLQFSVEVLFTGEKIGVGMGKTRKDAQQQAAENALHYLAEKYVA 696 (788)
Q Consensus 624 s~dyKS~LQE~~QK~~~~peYelveesG--H~~~FtveV~I~Gkk~G~G~GsSKKEAEQ~AAK~AL~~L~~~yl~ 696 (788)
..|+.+.|.|+++ .+.|..+...| |.+.|.+.|.|+|+.+-.| |+|||+|+++||..||+.|...-..
T Consensus 89 ~~npv~ll~e~~~----~~~~~~~~~~~~~~~~~F~~~~~vdg~~~~~~-~~sKk~ak~~aa~~al~~l~~~~~~ 158 (542)
T KOG2777|consen 89 GKNPVSLLHELAN----GLFFDFVNESGPQHAPKFVMSVVVDGRWFEGG-GRSKKEAKQEAAMAALQVLFKIDEN 158 (542)
T ss_pred cCCchHHHHHHhc----ccceeeeccCCCCCCceEEEEEEECCEEccCC-CcchHHHHHHHHHHHHHHHHhccCC
Confidence 5699999999988 78899988887 9999999999999999877 9999999999999999999865443
No 28
>TIGR01685 MDP-1 magnesium-dependent phosphatase-1. This model represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterized as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues.
Probab=97.68 E-value=0.00011 Score=73.49 Aligned_cols=102 Identities=17% Similarity=0.164 Sum_probs=68.1
Q ss_pred EEEecCChHHHHHHHHHhccccEEEEEEeCC-chHHHHHHHHhhCCC--CCccccccccCceEeecCCC-cccHhhhccc
Q 003896 254 LVRLRPAWEDLRSYLIAKGRKRFEVYVCTMA-ERDYALEMWRLLDPE--GHLIGSKQLLDRVVCVKSGS-RKSLLNVFQR 329 (788)
Q Consensus 254 ~VKLRPgweeLreFL~ak~sk~FElyVyTmg-tR~YA~~IlrLLDPd--gklF~~r~l~~RIisresg~-~KsL~rLf~~ 329 (788)
-++++|++.++.++|+ .+-+.+.|.|++ .+.|+..+++.++-+ |+-+..-.+++.++|.+... .|....++..
T Consensus 43 ~~~l~pGv~elL~~Lk---~~G~~l~I~Sn~~~~~~~~~~L~~~~l~~~~~~~~~~~~Fd~iv~~~~~~~~kp~~~i~~~ 119 (174)
T TIGR01685 43 EVTLIKEVRDVLQTLK---DAGTYLATASWNDVPEWAYEILGTFEITYAGKTVPMHSLFDDRIEIYKPNKAKQLEMILQK 119 (174)
T ss_pred EEEEcccHHHHHHHHH---HCCCEEEEEeCCCChHHHHHHHHhCCcCCCCCcccHHHhceeeeeccCCchHHHHHHHHHH
Confidence 4678899777777776 478999999988 999999999988743 43333223445666664432 3433222221
Q ss_pred ----C--CCCCCeEEEEeCCccccccCCCCCeEEe
Q 003896 330 ----G--LCHPKMAMVIDDRCKVWEDKDQPRVHVV 358 (788)
Q Consensus 330 ----g--~~d~~~VVIIDDR~dVW~~~~~NlI~VV 358 (788)
. +..++.+++|||++.=.....+.++.++
T Consensus 120 ~~~~~~~gl~p~e~l~VgDs~~di~aA~~aGi~~i 154 (174)
T TIGR01685 120 VNKVDPSVLKPAQILFFDDRTDNVREVWGYGVTSC 154 (174)
T ss_pred hhhcccCCCCHHHeEEEcChhHhHHHHHHhCCEEE
Confidence 1 2578999999999876655555566654
No 29
>TIGR01489 DKMTPPase-SF 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. Note that SP|P53981 from S. cerevisiae, a member of this family, is annotated as a "probable membrane protein" due to a predicted transmembrane helix. The region in question contains the second of the three conserved HAD superfamily catalytic motifs and thus, considering the fold of the HAD catalytic domain, is unlikely to be a transmembrane region in fact.
Probab=97.66 E-value=0.00044 Score=65.95 Aligned_cols=41 Identities=5% Similarity=0.192 Sum_probs=33.2
Q ss_pred EEecCChHHHHHHHHHhccccEEEEEEeCCchHHHHHHHHhhCC
Q 003896 255 VRLRPAWEDLRSYLIAKGRKRFEVYVCTMAERDYALEMWRLLDP 298 (788)
Q Consensus 255 VKLRPgweeLreFL~ak~sk~FElyVyTmgtR~YA~~IlrLLDP 298 (788)
++++|+..++.++|+ ...+.++|.|++.+.++..+++.++-
T Consensus 71 ~~l~~g~~~ll~~l~---~~g~~~~i~S~~~~~~~~~~l~~~~l 111 (188)
T TIGR01489 71 APIDPGFKEFIAFIK---EHGIDFIVISDGNDFFIDPVLEGIGE 111 (188)
T ss_pred CCCCccHHHHHHHHH---HcCCcEEEEeCCcHHHHHHHHHHcCC
Confidence 578899777667665 45699999999999999999987653
No 30
>KOG3769 consensus Ribonuclease III domain proteins [Translation, ribosomal structure and biogenesis]
Probab=97.42 E-value=9.8e-05 Score=79.41 Aligned_cols=71 Identities=24% Similarity=0.255 Sum_probs=64.7
Q ss_pred CCCCChHHHHHHHHHhC-CCCceEEEEeeeC---CCceEEEEEEECCeEeEEEecCCHHHHHHHHHHHHHHHHHH
Q 003896 622 LPSYLSIGVLQEIGKRC-SSKVEFRSVVSTS---KDLQFSVEVLFTGEKIGVGMGKTRKDAQQQAAENALHYLAE 692 (788)
Q Consensus 622 ~ps~dyKS~LQE~~QK~-~~~peYelveesG---H~~~FtveV~I~Gkk~G~G~GsSKKEAEQ~AAK~AL~~L~~ 692 (788)
++-.++..+|-++|++. ...|+|+++.++| ..+.|.|.++-+.+.+|+|.|.|-|.|++.||..||.++-.
T Consensus 229 ~ql~~P~~~L~~lckr~~l~epe~Rll~esGr~S~~PvyvVgiYs~kkllGqG~Gesl~~A~e~AA~dAL~k~y~ 303 (333)
T KOG3769|consen 229 WQLQWPRRLLSRLCKRRGLKEPESRLLAESGRNSAEPVYVVGIYSGKKLLGQGQGESLKLAEEQAARDALIKLYD 303 (333)
T ss_pred ccccchHHHHHHHHHHcCCCCchhHHHHHhccCccCceEEEEeecCchhhccCcchHHHHHHHHHHHHHHHHHHc
Confidence 35568999999999999 5679999998888 78899999999999999999999999999999999988754
No 31
>TIGR01488 HAD-SF-IB Haloacid Dehalogenase superfamily, subfamily IB, phosphoserine phosphatase-like. Subfamily IA includes the enzyme phosphoserine phosphatase (TIGR00338) as well as three hypothetical equivalogs. Many members of these hypothetical equivalogs have been annotated as PSPase-like or PSPase-family proteins. In particular, the hypothetical equivalog which appears to be most closely related to PSPase contains only Archaea (while TIGR00338 contains only eukaryotes and bacteria) of which some are annotated as PSPases. Although this is a reasonable conjecture, none of these sequences has sufficient evidence for this assignment. If such should be found, this model should be retired while the PSPase model should be broadened to include these sequences.
Probab=97.42 E-value=0.0006 Score=64.74 Aligned_cols=45 Identities=16% Similarity=0.218 Sum_probs=34.9
Q ss_pred EecCChHHHHHHHHHhccccEEEEEEeCCchHHHHHHHHhhCCCCCccc
Q 003896 256 RLRPAWEDLRSYLIAKGRKRFEVYVCTMAERDYALEMWRLLDPEGHLIG 304 (788)
Q Consensus 256 KLRPgweeLreFL~ak~sk~FElyVyTmgtR~YA~~IlrLLDPdgklF~ 304 (788)
+++|++.++.+.|+ ..-+.++|.|++.+.|+..+++.+.-+ .+|+
T Consensus 73 ~~~~g~~~~l~~l~---~~g~~~~ivS~~~~~~i~~~~~~~g~~-~~~~ 117 (177)
T TIGR01488 73 ALRPGARELISWLK---ERGIDTVIVSGGFDFFVEPVAEKLGID-DVFA 117 (177)
T ss_pred CcCcCHHHHHHHHH---HCCCEEEEECCCcHHHHHHHHHHcCCc-hhee
Confidence 46799666666665 456899999999999999999987544 4555
No 32
>PLN02954 phosphoserine phosphatase
Probab=97.33 E-value=0.00077 Score=66.98 Aligned_cols=47 Identities=19% Similarity=0.243 Sum_probs=37.6
Q ss_pred EEecCChHHHHHHHHHhccccEEEEEEeCCchHHHHHHHHhhCCCC-Cccc
Q 003896 255 VRLRPAWEDLRSYLIAKGRKRFEVYVCTMAERDYALEMWRLLDPEG-HLIG 304 (788)
Q Consensus 255 VKLRPgweeLreFL~ak~sk~FElyVyTmgtR~YA~~IlrLLDPdg-klF~ 304 (788)
.+++|++.++.++|+ ...+.++|.|.+.+.++..+++.++-+. .+|.
T Consensus 83 ~~l~pg~~e~l~~l~---~~g~~~~IvS~~~~~~i~~~l~~~gi~~~~~~~ 130 (224)
T PLN02954 83 PRLSPGIPELVKKLR---ARGTDVYLVSGGFRQMIAPVAAILGIPPENIFA 130 (224)
T ss_pred CCCCccHHHHHHHHH---HCCCEEEEECCCcHHHHHHHHHHhCCChhhEEE
Confidence 357899888888886 4678999999999999999999876442 4554
No 33
>TIGR01509 HAD-SF-IA-v3 haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED. HAD subfamilies caused by an overly broad single model.
Probab=97.33 E-value=0.0011 Score=62.85 Aligned_cols=78 Identities=19% Similarity=0.207 Sum_probs=47.5
Q ss_pred EEecCChHHHHHHHHHhc-cccEEEEEEeCCchHHHHHHHHhhCCCCCccccccccCceEee-cCCCcc----cHhhhcc
Q 003896 255 VRLRPAWEDLRSYLIAKG-RKRFEVYVCTMAERDYALEMWRLLDPEGHLIGSKQLLDRVVCV-KSGSRK----SLLNVFQ 328 (788)
Q Consensus 255 VKLRPgweeLreFL~ak~-sk~FElyVyTmgtR~YA~~IlrLLDPdgklF~~r~l~~RIisr-esg~~K----sL~rLf~ 328 (788)
+++.|+ +.++|+ .+ .+-|.++|+|++.+.+ ..++..++-.. +| +.+++. +.+..| -+..++.
T Consensus 84 ~~~~~g---~~~~l~-~l~~~g~~~~i~Tn~~~~~-~~~~~~~~l~~-~f------~~i~~~~~~~~~KP~~~~~~~~~~ 151 (183)
T TIGR01509 84 LKPLPG---VEPLLE-ALRARGKKLALLTNSPRDH-AVLVQELGLRD-LF------DVVIFSGDVGRGKPDPDIYLLALK 151 (183)
T ss_pred CccCcC---HHHHHH-HHHHCCCeEEEEeCCchHH-HHHHHhcCCHH-HC------CEEEEcCCCCCCCCCHHHHHHHHH
Confidence 678899 555554 33 3468999999999999 55554344332 23 455543 223323 2333333
Q ss_pred cCCCCCCeEEEEeCCc
Q 003896 329 RGLCHPKMAMVIDDRC 344 (788)
Q Consensus 329 ~g~~d~~~VVIIDDR~ 344 (788)
.-++.++.+|+|||+.
T Consensus 152 ~~~~~~~~~~~vgD~~ 167 (183)
T TIGR01509 152 KLGLKPEECLFVDDSP 167 (183)
T ss_pred HcCCCcceEEEEcCCH
Confidence 2235789999999986
No 34
>TIGR01993 Pyr-5-nucltdase pyrimidine 5'-nucleotidase. These enzymes are members of the haloacid dehalogenase (HAD) superfamily of hydrolases, specifically the IA subfamily (variant 3, TIGR01509).
Probab=97.30 E-value=0.0015 Score=63.26 Aligned_cols=77 Identities=21% Similarity=0.312 Sum_probs=50.9
Q ss_pred EEecCChHHHHHHHHHhccccEEEEEEeCCchHHHHHHHHhhCCCCCccccccccCceEeecC-CC----ccc----Hhh
Q 003896 255 VRLRPAWEDLRSYLIAKGRKRFEVYVCTMAERDYALEMWRLLDPEGHLIGSKQLLDRVVCVKS-GS----RKS----LLN 325 (788)
Q Consensus 255 VKLRPgweeLreFL~ak~sk~FElyVyTmgtR~YA~~IlrLLDPdgklF~~r~l~~RIisres-g~----~Ks----L~r 325 (788)
+++.|+ +.++|+ ++. |.++|.|++.+.++..+++.++-. .+| +.|+|.++ +. .|- +..
T Consensus 83 ~~~~~g---~~~~L~-~L~--~~~~i~Tn~~~~~~~~~l~~~gl~-~~f------d~i~~~~~~~~~~~~~KP~p~~~~~ 149 (184)
T TIGR01993 83 LKPDPE---LRNLLL-RLP--GRKIIFTNGDRAHARRALNRLGIE-DCF------DGIFCFDTANPDYLLPKPSPQAYEK 149 (184)
T ss_pred CCCCHH---HHHHHH-hCC--CCEEEEeCCCHHHHHHHHHHcCcH-hhh------CeEEEeecccCccCCCCCCHHHHHH
Confidence 456678 777887 554 689999999999999999887533 234 46666643 21 132 222
Q ss_pred hcccCCCCCCeEEEEeCCc
Q 003896 326 VFQRGLCHPKMAMVIDDRC 344 (788)
Q Consensus 326 Lf~~g~~d~~~VVIIDDR~ 344 (788)
++..-+..++.+++|||+.
T Consensus 150 ~~~~~~~~~~~~l~vgD~~ 168 (184)
T TIGR01993 150 ALREAGVDPERAIFFDDSA 168 (184)
T ss_pred HHHHhCCCccceEEEeCCH
Confidence 2222224688899999985
No 35
>TIGR00338 serB phosphoserine phosphatase SerB. Phosphoserine phosphatase catalyzes the reaction 3-phospho-serine + H2O = L-serine + phosphate. It catalyzes the last of three steps in the biosynthesis of serine from D-3-phosphoglycerate. Note that this enzyme acts on free phosphoserine, not on phosphoserine residues of phosphoproteins.
Probab=97.21 E-value=0.0019 Score=64.03 Aligned_cols=86 Identities=19% Similarity=0.220 Sum_probs=51.1
Q ss_pred EEecCChHHHHHHHHHhccccEEEEEEeCCchHHHHHHHHhhCCCCCcccccccc-CceEe-ecCC-------CcccHhh
Q 003896 255 VRLRPAWEDLRSYLIAKGRKRFEVYVCTMAERDYALEMWRLLDPEGHLIGSKQLL-DRVVC-VKSG-------SRKSLLN 325 (788)
Q Consensus 255 VKLRPgweeLreFL~ak~sk~FElyVyTmgtR~YA~~IlrLLDPdgklF~~r~l~-~RIis-resg-------~~KsL~r 325 (788)
++++|+..++.+.|+ .+.+.++|.|+|.+.++..+++.+.-+. +|...... +.+++ ...+ ..+-+..
T Consensus 84 ~~~~~g~~~~l~~l~---~~g~~~~IvS~~~~~~~~~~l~~~~i~~-~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~ 159 (219)
T TIGR00338 84 LPLTEGAEELVKTLK---EKGYKVAVISGGFDLFAEHVKDKLGLDA-AFANRLEVEDGKLTGLVEGPIVDASYKGKTLLI 159 (219)
T ss_pred CCcCCCHHHHHHHHH---HCCCEEEEECCCcHHHHHHHHHHcCCCc-eEeeEEEEECCEEEEEecCcccCCcccHHHHHH
Confidence 467899666666664 3569999999999999999999866443 55532111 11111 1111 1112333
Q ss_pred hcccCCCCCCeEEEEeCCc
Q 003896 326 VFQRGLCHPKMAMVIDDRC 344 (788)
Q Consensus 326 Lf~~g~~d~~~VVIIDDR~ 344 (788)
++.....+++.++.|+|+.
T Consensus 160 ~~~~~~~~~~~~i~iGDs~ 178 (219)
T TIGR00338 160 LLRKEGISPENTVAVGDGA 178 (219)
T ss_pred HHHHcCCCHHHEEEEECCH
Confidence 3332234677888999873
No 36
>TIGR03351 PhnX-like phosphonatase-like hydrolase. This clade of sequences are the closest homologs to the PhnX enzyme, phosphonoacetaldehyde (Pald) hydrolase (phosphonatase, TIGR01422). This phosphonatase-like enzyme and PhnX itself are members of the haloacid dehalogenase (HAD) superfamily (pfam00702) having a a number of distinctive features that set them apart from typical HAD enzymes. The typical HAD N-terminal motif DxDx(T/V) here is DxAGT and the usual conserved lysine prior to the C-terminal motif is instead an arginine. Also distinctive of phosphonatase, and particular to its bi-catalytic mechanism is a conserved lysine in the variable "cap" domain. This lysine forms a Schiff base with the aldehyde of phosphonoacetaldehyde, providing, through the resulting positive charge, a polarization of the C-P bond necesary for cleavage as well as a route to the initial product of cleavage, an ene-amine. The conservation of these elements in this phosphonatase-like enzyme suggests that the
Probab=97.19 E-value=0.001 Score=66.00 Aligned_cols=81 Identities=20% Similarity=0.160 Sum_probs=54.7
Q ss_pred EEecCChHHHHHHHHHhccccEEEEEEeCCchHHHHHHHHhhCCC-CCccccccccCceEeecC-CCcc----cHhhhcc
Q 003896 255 VRLRPAWEDLRSYLIAKGRKRFEVYVCTMAERDYALEMWRLLDPE-GHLIGSKQLLDRVVCVKS-GSRK----SLLNVFQ 328 (788)
Q Consensus 255 VKLRPgweeLreFL~ak~sk~FElyVyTmgtR~YA~~IlrLLDPd-gklF~~r~l~~RIisres-g~~K----sL~rLf~ 328 (788)
+++.||..++++.|+ .+.|.+.|.|++.+.++..+++.++-. +.+|. .++|.++ +..| -+..++.
T Consensus 86 ~~l~~G~~~~L~~L~---~~g~~~~ivT~~~~~~~~~~l~~~~l~~~~~f~------~i~~~~~~~~~KP~p~~~~~a~~ 156 (220)
T TIGR03351 86 PVALPGAEEAFRSLR---SSGIKVALTTGFDRDTAERLLEKLGWTVGDDVD------AVVCPSDVAAGRPAPDLILRAME 156 (220)
T ss_pred CccCCCHHHHHHHHH---HCCCEEEEEeCCchHHHHHHHHHhhhhhhccCC------EEEcCCcCCCCCCCHHHHHHHHH
Confidence 478899666666664 467999999999999999999987654 25555 5666644 2222 1333333
Q ss_pred cCCCC-CCeEEEEeCCc
Q 003896 329 RGLCH-PKMAMVIDDRC 344 (788)
Q Consensus 329 ~g~~d-~~~VVIIDDR~ 344 (788)
..++. ++.+|+|+|+.
T Consensus 157 ~~~~~~~~~~~~igD~~ 173 (220)
T TIGR03351 157 LTGVQDVQSVAVAGDTP 173 (220)
T ss_pred HcCCCChhHeEEeCCCH
Confidence 22244 58899999985
No 37
>TIGR01491 HAD-SF-IB-PSPlk HAD-superfamily, subfamily-IB PSPase-like hydrolase, archaeal. This hypothetical equivalog is a member of the IB subfamily (TIGR01488) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this alignment are all from archaeal species. The phylogenetically closest group of sequences to these are phosphoserine phosphatases (TIGR00338). There are no known archaeal phosphoserine phosphatases, and no archaea fall within TIGR00338. It is likely, then, that This model represents the archaeal branch of the PSPase equivalog.
Probab=97.19 E-value=0.00078 Score=65.13 Aligned_cols=46 Identities=20% Similarity=0.222 Sum_probs=36.8
Q ss_pred EEecCChHHHHHHHHHhccccEEEEEEeCCchHHHHHHHHhhCCCCCccc
Q 003896 255 VRLRPAWEDLRSYLIAKGRKRFEVYVCTMAERDYALEMWRLLDPEGHLIG 304 (788)
Q Consensus 255 VKLRPgweeLreFL~ak~sk~FElyVyTmgtR~YA~~IlrLLDPdgklF~ 304 (788)
++++|++.++.++|+ .+-+.++|.|++.+.++..+++.+.-+ .+|.
T Consensus 79 ~~~~~g~~e~l~~l~---~~g~~~~IvS~~~~~~~~~~l~~~g~~-~~~~ 124 (201)
T TIGR01491 79 ISLRDYAEELVRWLK---EKGLKTAIVSGGIMCLAKKVAEKLNPD-YVYS 124 (201)
T ss_pred CCCCccHHHHHHHHH---HCCCEEEEEeCCcHHHHHHHHHHhCCC-eEEE
Confidence 368899777777775 467999999999999999999987754 3444
No 38
>TIGR01681 HAD-SF-IIIC HAD-superfamily phosphatase, subfamily IIIC. No member of this subfamily is characterized with respect to function, however the MDP-1 protein is a characterized phosphatase. All of the characterized enzymes within subfamily III are phosphatases, and all of the active site residues characteristic of HAD-superfamily phosphatases are present in subfamily IIIC.
Probab=97.14 E-value=0.00064 Score=63.76 Aligned_cols=86 Identities=15% Similarity=0.174 Sum_probs=51.5
Q ss_pred EecCChHHHHHHHHHhccccEEEEEEeCC-chHHHHHHHHhhCCCCCccccccccCceEeecC-CCcccHhhhcccCC--
Q 003896 256 RLRPAWEDLRSYLIAKGRKRFEVYVCTMA-ERDYALEMWRLLDPEGHLIGSKQLLDRVVCVKS-GSRKSLLNVFQRGL-- 331 (788)
Q Consensus 256 KLRPgweeLreFL~ak~sk~FElyVyTmg-tR~YA~~IlrLLDPdgklF~~r~l~~RIisres-g~~KsL~rLf~~g~-- 331 (788)
++.||..++.+.|+ +.-|.+.|.|++ .+.|+..+++.+.+.+.+..-..+++.++|.+. ...+-+..+...-+
T Consensus 29 ~~~~gv~e~L~~Lk---~~g~~l~i~Sn~~~~~~~~~~l~~~~~~~~i~~l~~~f~~~~~~~~~pkp~~~~~a~~~lg~~ 105 (128)
T TIGR01681 29 VTIKEIRDKLQTLK---KNGFLLALASYNDDPHVAYELLKIFEDFGIIFPLAEYFDPLTIGYWLPKSPRLVEIALKLNGV 105 (128)
T ss_pred HHHHHHHHHHHHHH---HCCeEEEEEeCCCCHHHHHHHHHhccccccchhhHhhhhhhhhcCCCcHHHHHHHHHHHhcCC
Confidence 45588666666665 467999999999 999999999987642222101112234443322 11222222222112
Q ss_pred CCCCeEEEEeCCc
Q 003896 332 CHPKMAMVIDDRC 344 (788)
Q Consensus 332 ~d~~~VVIIDDR~ 344 (788)
+.++.+++|||+.
T Consensus 106 ~~p~~~l~igDs~ 118 (128)
T TIGR01681 106 LKPKSILFVDDRP 118 (128)
T ss_pred CCcceEEEECCCH
Confidence 5789999999985
No 39
>TIGR01454 AHBA_synth_RP 3-amino-5-hydroxybenoic acid synthesis related protein. The most closely related enzyme below the noise cutoff is IndB which is involved in the biosynthesis of Indigoidine in Pectobacterium (Erwinia) chrysanthemi, a gamma proteobacter. This enzyme is similarly related to PGP. In this case, too it is unclear what role would be be played by a PGPase activity.
Probab=97.13 E-value=0.00068 Score=66.76 Aligned_cols=93 Identities=16% Similarity=0.113 Sum_probs=59.7
Q ss_pred EEecCChHHHHHHHHHhccccEEEEEEeCCchHHHHHHHHhhCCCCCccccccccCceEeecCC-Ccc----cHhhhccc
Q 003896 255 VRLRPAWEDLRSYLIAKGRKRFEVYVCTMAERDYALEMWRLLDPEGHLIGSKQLLDRVVCVKSG-SRK----SLLNVFQR 329 (788)
Q Consensus 255 VKLRPgweeLreFL~ak~sk~FElyVyTmgtR~YA~~IlrLLDPdgklF~~r~l~~RIisresg-~~K----sL~rLf~~ 329 (788)
+++.|+..++.++|+ .+.|.+.|+|++.+.++..+++.++-.+ +| +.+++.++. ..| -+..+...
T Consensus 74 ~~~~~g~~~~L~~L~---~~g~~~~i~Sn~~~~~~~~~l~~~~l~~-~f------~~i~~~~~~~~~KP~~~~~~~~~~~ 143 (205)
T TIGR01454 74 VEVFPGVPELLAELR---ADGVGTAIATGKSGPRARSLLEALGLLP-LF------DHVIGSDEVPRPKPAPDIVREALRL 143 (205)
T ss_pred cccCCCHHHHHHHHH---HCCCeEEEEeCCchHHHHHHHHHcCChh-he------eeEEecCcCCCCCCChHHHHHHHHH
Confidence 577899777777775 4579999999999999999998876543 33 345555432 112 23333322
Q ss_pred CCCCCCeEEEEeCCcc-ccccCCCCCeEEe
Q 003896 330 GLCHPKMAMVIDDRCK-VWEDKDQPRVHVV 358 (788)
Q Consensus 330 g~~d~~~VVIIDDR~d-VW~~~~~NlI~VV 358 (788)
-+++++.+++|+|+.. +-..+. .++.++
T Consensus 144 ~~~~~~~~l~igD~~~Di~aA~~-~Gi~~i 172 (205)
T TIGR01454 144 LDVPPEDAVMVGDAVTDLASARA-AGTATV 172 (205)
T ss_pred cCCChhheEEEcCCHHHHHHHHH-cCCeEE
Confidence 2356788999999853 434443 355543
No 40
>TIGR02253 CTE7 HAD superfamily (subfamily IA) hydrolase, TIGR02253. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549).
Probab=97.12 E-value=0.00037 Score=68.77 Aligned_cols=89 Identities=19% Similarity=0.228 Sum_probs=56.8
Q ss_pred EEEecCChHHHHHHHHHhccccEEEEEEeCCchHHHHHHHHhhCCCCCccccccccCceEeecC-CCccc----Hhhhcc
Q 003896 254 LVRLRPAWEDLRSYLIAKGRKRFEVYVCTMAERDYALEMWRLLDPEGHLIGSKQLLDRVVCVKS-GSRKS----LLNVFQ 328 (788)
Q Consensus 254 ~VKLRPgweeLreFL~ak~sk~FElyVyTmgtR~YA~~IlrLLDPdgklF~~r~l~~RIisres-g~~Ks----L~rLf~ 328 (788)
++++.|++.+++++|+ .+.+-+.|.|++.+.++...++.++-+ .+| +.|+|.++ +..|. +..++.
T Consensus 92 ~~~~~~g~~~~L~~L~---~~g~~~~i~Tn~~~~~~~~~l~~~~l~-~~f------~~i~~~~~~~~~KP~~~~~~~~~~ 161 (221)
T TIGR02253 92 YLRVYPGVRDTLMELR---ESGYRLGIITDGLPVKQWEKLERLGVR-DFF------DAVITSEEEGVEKPHPKIFYAALK 161 (221)
T ss_pred hCCCCCCHHHHHHHHH---HCCCEEEEEeCCchHHHHHHHHhCChH-Hhc------cEEEEeccCCCCCCCHHHHHHHHH
Confidence 5678999666666664 345899999999999999888877643 233 45666533 32221 222222
Q ss_pred cCCCCCCeEEEEeCCc--cccccCCC
Q 003896 329 RGLCHPKMAMVIDDRC--KVWEDKDQ 352 (788)
Q Consensus 329 ~g~~d~~~VVIIDDR~--dVW~~~~~ 352 (788)
.-+..++.+|.|+|+. |+=.....
T Consensus 162 ~~~~~~~~~~~igDs~~~di~~A~~a 187 (221)
T TIGR02253 162 RLGVKPEEAVMVGDRLDKDIKGAKNL 187 (221)
T ss_pred HcCCChhhEEEECCChHHHHHHHHHC
Confidence 2124678899999985 55544443
No 41
>cd01427 HAD_like Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others, all of which use a nucleophilic aspartate in their phosphoryl transfer reaction. All members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. Members of this superfamily are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.
Probab=97.03 E-value=0.001 Score=58.22 Aligned_cols=40 Identities=23% Similarity=0.249 Sum_probs=29.2
Q ss_pred EEecCChHHHHHHHHHhccccEEEEEEeCCchHHHHHHHHhhC
Q 003896 255 VRLRPAWEDLRSYLIAKGRKRFEVYVCTMAERDYALEMWRLLD 297 (788)
Q Consensus 255 VKLRPgweeLreFL~ak~sk~FElyVyTmgtR~YA~~IlrLLD 297 (788)
++++|++.++.+.|+ ...+.++|+|++.+.++..+++.+.
T Consensus 23 ~~~~~~~~~~l~~l~---~~g~~i~ivS~~~~~~~~~~~~~~~ 62 (139)
T cd01427 23 LELYPGVKEALKELK---EKGIKLALATNKSRREVLELLEELG 62 (139)
T ss_pred CCcCcCHHHHHHHHH---HCCCeEEEEeCchHHHHHHHHHHcC
Confidence 445688444444443 2359999999999999999998765
No 42
>TIGR01422 phosphonatase phosphonoacetaldehyde hydrolase. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases (pfam00702), and contains a modified version of the conserved catalytic motifs of that superfamily: the first motif is usually DxDx(T/V), here it is DxAxT, and in the third motif the normal conserved lysine is instead an arginine. Additionally, the enzyme contains a unique conserved catalytic lysine (B. cereus pos. 53) which is involved in the binding and activation of the substrate through the formation of a Schiff base. The substrate of this enzyme is the product of 2-aminoethylphosphonate (AEP) transaminase, phosphonoacetaldehyde. This degradation pathway for AEP may be related to its toxic properties which are utilized by microorganisms as a chemical warfare agent.
Probab=97.02 E-value=0.0054 Score=62.62 Aligned_cols=94 Identities=13% Similarity=0.029 Sum_probs=59.3
Q ss_pred EEecCChHHHHHHHHHhccccEEEEEEeCCchHHHHHHHHhhCCCCCccccccccCceEeecCC-Ccc----cHhhhccc
Q 003896 255 VRLRPAWEDLRSYLIAKGRKRFEVYVCTMAERDYALEMWRLLDPEGHLIGSKQLLDRVVCVKSG-SRK----SLLNVFQR 329 (788)
Q Consensus 255 VKLRPgweeLreFL~ak~sk~FElyVyTmgtR~YA~~IlrLLDPdgklF~~r~l~~RIisresg-~~K----sL~rLf~~ 329 (788)
+++.||+.+++++|+ .+.+.+.|.|++.+.++..+++.++-.+.+| +.|+|.++. ..| -+...+..
T Consensus 98 ~~~~pg~~e~L~~L~---~~g~~l~IvT~~~~~~~~~~l~~~gl~~~f~------d~ii~~~~~~~~KP~p~~~~~a~~~ 168 (253)
T TIGR01422 98 SSPIPGVIEVIAYLR---ARGIKIGSTTGYTREMMDVVAPEAALQGYRP------DYNVTTDDVPAGRPAPWMALKNAIE 168 (253)
T ss_pred CccCCCHHHHHHHHH---HCCCeEEEECCCcHHHHHHHHHHHHhcCCCC------ceEEccccCCCCCCCHHHHHHHHHH
Confidence 567799777777776 4579999999999999999999876543222 466666442 222 12222222
Q ss_pred CCC-CCCeEEEEeCCc-cccccCCCCCeEEe
Q 003896 330 GLC-HPKMAMVIDDRC-KVWEDKDQPRVHVV 358 (788)
Q Consensus 330 g~~-d~~~VVIIDDR~-dVW~~~~~NlI~VV 358 (788)
.++ +++.+|+|.|+. |+-..+.. ++.++
T Consensus 169 l~~~~~~~~l~IGDs~~Di~aA~~a-Gi~~i 198 (253)
T TIGR01422 169 LGVYDVAACVKVGDTVPDIEEGRNA-GMWTV 198 (253)
T ss_pred cCCCCchheEEECCcHHHHHHHHHC-CCeEE
Confidence 123 377899999985 34444443 55443
No 43
>PLN03243 haloacid dehalogenase-like hydrolase; Provisional
Probab=97.00 E-value=0.0018 Score=67.97 Aligned_cols=94 Identities=18% Similarity=0.233 Sum_probs=58.1
Q ss_pred EEecCChHHHHHHHHHhccccEEEEEEeCCchHHHHHHHHhhCCCCCccccccccCceEeecCC-Cccc----Hhhhccc
Q 003896 255 VRLRPAWEDLRSYLIAKGRKRFEVYVCTMAERDYALEMWRLLDPEGHLIGSKQLLDRVVCVKSG-SRKS----LLNVFQR 329 (788)
Q Consensus 255 VKLRPgweeLreFL~ak~sk~FElyVyTmgtR~YA~~IlrLLDPdgklF~~r~l~~RIisresg-~~Ks----L~rLf~~ 329 (788)
+++.||+.++.+.|+ ...|-+.|.|++.+.++..+++.++-.. +| +.|++.++. ..|- +..+...
T Consensus 108 ~~l~pg~~e~L~~L~---~~g~~l~I~Tn~~~~~~~~~l~~~gl~~-~F------d~ii~~~d~~~~KP~Pe~~~~a~~~ 177 (260)
T PLN03243 108 YRLRPGSREFVQALK---KHEIPIAVASTRPRRYLERAIEAVGMEG-FF------SVVLAAEDVYRGKPDPEMFMYAAER 177 (260)
T ss_pred cccCCCHHHHHHHHH---HCCCEEEEEeCcCHHHHHHHHHHcCCHh-hC------cEEEecccCCCCCCCHHHHHHHHHH
Confidence 567899666666665 4579999999999999999999875322 33 456665432 1221 1112221
Q ss_pred CCCCCCeEEEEeCCccccccCCCCCeEEe
Q 003896 330 GLCHPKMAMVIDDRCKVWEDKDQPRVHVV 358 (788)
Q Consensus 330 g~~d~~~VVIIDDR~dVW~~~~~NlI~VV 358 (788)
-++.++.+|+|+|+..=-....+.++.++
T Consensus 178 l~~~p~~~l~IgDs~~Di~aA~~aG~~~i 206 (260)
T PLN03243 178 LGFIPERCIVFGNSNSSVEAAHDGCMKCV 206 (260)
T ss_pred hCCChHHeEEEcCCHHHHHHHHHcCCEEE
Confidence 12578889999998542222233355544
No 44
>TIGR01549 HAD-SF-IA-v1 haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E. HAD subfamilies caused by an overly broad single model.
Probab=96.97 E-value=0.0047 Score=57.87 Aligned_cols=75 Identities=13% Similarity=0.061 Sum_probs=48.9
Q ss_pred ecCChHHHHHHHHHhccccEEEEEEeCCchHHHHHHHHhhCCCCCccccccccCceEeecCCCcc----cHhhhcccCCC
Q 003896 257 LRPAWEDLRSYLIAKGRKRFEVYVCTMAERDYALEMWRLLDPEGHLIGSKQLLDRVVCVKSGSRK----SLLNVFQRGLC 332 (788)
Q Consensus 257 LRPgweeLreFL~ak~sk~FElyVyTmgtR~YA~~IlrLLDPdgklF~~r~l~~RIisresg~~K----sL~rLf~~g~~ 332 (788)
..||+.++.++|+ .+.+.++|.|++.+.++..+++.+ -..+| ..+++.++...| -+..++..-++
T Consensus 65 ~~~g~~e~l~~L~---~~g~~~~i~T~~~~~~~~~~~~~~--l~~~f------~~i~~~~~~~~Kp~~~~~~~~~~~~~~ 133 (154)
T TIGR01549 65 YIRGAADLLKRLK---EAGIKLGIISNGSLRAQKLLLRKH--LGDYF------DLILGSDEFGAKPEPEIFLAALESLGL 133 (154)
T ss_pred eccCHHHHHHHHH---HCcCeEEEEeCCchHHHHHHHHHH--HHhcC------cEEEecCCCCCCcCHHHHHHHHHHcCC
Confidence 3489777777775 457899999999999999999974 12334 356665432222 13333322224
Q ss_pred CCCeEEEEeCC
Q 003896 333 HPKMAMVIDDR 343 (788)
Q Consensus 333 d~~~VVIIDDR 343 (788)
.+ .+|+|+|+
T Consensus 134 ~~-~~l~iGDs 143 (154)
T TIGR01549 134 PP-EVLHVGDN 143 (154)
T ss_pred CC-CEEEEeCC
Confidence 56 78999998
No 45
>PRK13288 pyrophosphatase PpaX; Provisional
Probab=96.92 E-value=0.0082 Score=59.57 Aligned_cols=94 Identities=14% Similarity=0.128 Sum_probs=59.2
Q ss_pred EEecCChHHHHHHHHHhccccEEEEEEeCCchHHHHHHHHhhCCCCCccccccccCceEeecCC-Ccc----cHhhhccc
Q 003896 255 VRLRPAWEDLRSYLIAKGRKRFEVYVCTMAERDYALEMWRLLDPEGHLIGSKQLLDRVVCVKSG-SRK----SLLNVFQR 329 (788)
Q Consensus 255 VKLRPgweeLreFL~ak~sk~FElyVyTmgtR~YA~~IlrLLDPdgklF~~r~l~~RIisresg-~~K----sL~rLf~~ 329 (788)
+++.||..++.++|+ .+.+.+.|.|++.+.++..+++.++=. .+| +.+++.++. ..| .+.++...
T Consensus 81 ~~~~~g~~~~l~~L~---~~g~~~~i~S~~~~~~~~~~l~~~gl~-~~f------~~i~~~~~~~~~Kp~p~~~~~~~~~ 150 (214)
T PRK13288 81 VTEYETVYETLKTLK---KQGYKLGIVTTKMRDTVEMGLKLTGLD-EFF------DVVITLDDVEHAKPDPEPVLKALEL 150 (214)
T ss_pred cccCcCHHHHHHHHH---HCCCeEEEEeCCCHHHHHHHHHHcCCh-hce------eEEEecCcCCCCCCCcHHHHHHHHH
Confidence 567899666666665 356899999999999999999987643 234 356655432 111 23333332
Q ss_pred CCCCCCeEEEEeCCccccccCCCCCeEEe
Q 003896 330 GLCHPKMAMVIDDRCKVWEDKDQPRVHVV 358 (788)
Q Consensus 330 g~~d~~~VVIIDDR~dVW~~~~~NlI~VV 358 (788)
-+..++.+++|+|+..=.....+.++.++
T Consensus 151 ~~~~~~~~~~iGDs~~Di~aa~~aG~~~i 179 (214)
T PRK13288 151 LGAKPEEALMVGDNHHDILAGKNAGTKTA 179 (214)
T ss_pred cCCCHHHEEEECCCHHHHHHHHHCCCeEE
Confidence 22467889999999643333333355443
No 46
>PRK13226 phosphoglycolate phosphatase; Provisional
Probab=96.88 E-value=0.005 Score=62.44 Aligned_cols=82 Identities=17% Similarity=0.022 Sum_probs=53.9
Q ss_pred EEEecCChHHHHHHHHHhccccEEEEEEeCCchHHHHHHHHhhCCCCCccccccccCceEeecC-CCcc----cHhhhcc
Q 003896 254 LVRLRPAWEDLRSYLIAKGRKRFEVYVCTMAERDYALEMWRLLDPEGHLIGSKQLLDRVVCVKS-GSRK----SLLNVFQ 328 (788)
Q Consensus 254 ~VKLRPgweeLreFL~ak~sk~FElyVyTmgtR~YA~~IlrLLDPdgklF~~r~l~~RIisres-g~~K----sL~rLf~ 328 (788)
.+++.|++.++.+.|+ ...+-+.|.|++.+.++..+++.++-.. +| +.+++.++ +..| -+..+..
T Consensus 93 ~~~~~pg~~~~L~~L~---~~g~~l~i~Tn~~~~~~~~~l~~~~l~~-~f------~~i~~~~~~~~~KP~p~~~~~~~~ 162 (229)
T PRK13226 93 QSQLFDGVEGMLQRLE---CAGCVWGIVTNKPEYLARLILPQLGWEQ-RC------AVLIGGDTLAERKPHPLPLLVAAE 162 (229)
T ss_pred cCeeCCCHHHHHHHHH---HCCCeEEEECCCCHHHHHHHHHHcCchh-cc------cEEEecCcCCCCCCCHHHHHHHHH
Confidence 4678899777777775 4568999999999999999888765332 23 34555443 2222 1222332
Q ss_pred cCCCCCCeEEEEeCCcc
Q 003896 329 RGLCHPKMAMVIDDRCK 345 (788)
Q Consensus 329 ~g~~d~~~VVIIDDR~d 345 (788)
..+..++.+++|+|+..
T Consensus 163 ~l~~~p~~~l~IGDs~~ 179 (229)
T PRK13226 163 RIGVAPTDCVYVGDDER 179 (229)
T ss_pred HhCCChhhEEEeCCCHH
Confidence 22247889999999964
No 47
>TIGR01548 HAD-SF-IA-hyp1 haloacid dehalogenase superfamily, subfamily IA hydrolase, TIGR01548. All but the Halobacterium sequence currently found are annotated as "Imidazoleglycerol-phosphate dehydratase", however, the source of the annotation could not be traced and significant homology could not be found between any of these sequences and known IGPD's.
Probab=96.87 E-value=0.016 Score=57.09 Aligned_cols=78 Identities=17% Similarity=0.011 Sum_probs=51.4
Q ss_pred ecCChHHHHHHHHHhccccEEEEEEeCCchHHHHHHHHhhCCCCCccccccccCceEeecCCCcc----cHhhhcccCCC
Q 003896 257 LRPAWEDLRSYLIAKGRKRFEVYVCTMAERDYALEMWRLLDPEGHLIGSKQLLDRVVCVKSGSRK----SLLNVFQRGLC 332 (788)
Q Consensus 257 LRPgweeLreFL~ak~sk~FElyVyTmgtR~YA~~IlrLLDPdgklF~~r~l~~RIisresg~~K----sL~rLf~~g~~ 332 (788)
..|+..++++.|+ .+-+.+.|.|++.+.++..+++.+.=. .+| +.+++.++...| .+..++...++
T Consensus 107 ~~~~~~~~L~~l~---~~g~~~~i~T~~~~~~~~~~l~~~gl~-~~f------~~~~~~~~~~~KP~p~~~~~~~~~~~~ 176 (197)
T TIGR01548 107 TLLTPKGLLRELH---RAPKGMAVVTGRPRKDAAKFLTTHGLE-ILF------PVQIWMEDCPPKPNPEPLILAAKALGV 176 (197)
T ss_pred cccCHHHHHHHHH---HcCCcEEEECCCCHHHHHHHHHHcCch-hhC------CEEEeecCCCCCcCHHHHHHHHHHhCc
Confidence 4566566777775 356999999999999999999986543 334 456665442112 12223332235
Q ss_pred CCCeEEEEeCCc
Q 003896 333 HPKMAMVIDDRC 344 (788)
Q Consensus 333 d~~~VVIIDDR~ 344 (788)
+++.+|+|+|+.
T Consensus 177 ~~~~~i~vGD~~ 188 (197)
T TIGR01548 177 EACHAAMVGDTV 188 (197)
T ss_pred CcccEEEEeCCH
Confidence 788999999985
No 48
>PRK13222 phosphoglycolate phosphatase; Provisional
Probab=96.85 E-value=0.0097 Score=58.77 Aligned_cols=81 Identities=17% Similarity=0.182 Sum_probs=52.4
Q ss_pred EEecCChHHHHHHHHHhccccEEEEEEeCCchHHHHHHHHhhCCCCCccccccccCceEeecCC-Ccc----cHhhhccc
Q 003896 255 VRLRPAWEDLRSYLIAKGRKRFEVYVCTMAERDYALEMWRLLDPEGHLIGSKQLLDRVVCVKSG-SRK----SLLNVFQR 329 (788)
Q Consensus 255 VKLRPgweeLreFL~ak~sk~FElyVyTmgtR~YA~~IlrLLDPdgklF~~r~l~~RIisresg-~~K----sL~rLf~~ 329 (788)
++++|+..++.+.|+ ...+.+.|+|++.+.++..+++.++-. .+| +.+++.++. ..| -+..++..
T Consensus 92 ~~~~~g~~~~l~~l~---~~g~~~~i~S~~~~~~~~~~l~~~~l~-~~f------~~~~~~~~~~~~kp~~~~~~~~~~~ 161 (226)
T PRK13222 92 SRLYPGVKETLAALK---AAGYPLAVVTNKPTPFVAPLLEALGIA-DYF------SVVIGGDSLPNKKPDPAPLLLACEK 161 (226)
T ss_pred CccCCCHHHHHHHHH---HCCCeEEEEeCCCHHHHHHHHHHcCCc-cCc------cEEEcCCCCCCCCcChHHHHHHHHH
Confidence 567899666555554 357999999999999999999987643 233 345554331 122 13333332
Q ss_pred CCCCCCeEEEEeCCcc
Q 003896 330 GLCHPKMAMVIDDRCK 345 (788)
Q Consensus 330 g~~d~~~VVIIDDR~d 345 (788)
-...++.+++|+|+..
T Consensus 162 ~~~~~~~~i~igD~~~ 177 (226)
T PRK13222 162 LGLDPEEMLFVGDSRN 177 (226)
T ss_pred cCCChhheEEECCCHH
Confidence 2246789999999953
No 49
>PRK11587 putative phosphatase; Provisional
Probab=96.84 E-value=0.0067 Score=60.76 Aligned_cols=92 Identities=16% Similarity=0.021 Sum_probs=54.7
Q ss_pred EEEecCChHHHHHHHHHhccccEEEEEEeCCchHHHHHHHHhhCCCCCccccccccCceEeecC-CCcc----cHhhhcc
Q 003896 254 LVRLRPAWEDLRSYLIAKGRKRFEVYVCTMAERDYALEMWRLLDPEGHLIGSKQLLDRVVCVKS-GSRK----SLLNVFQ 328 (788)
Q Consensus 254 ~VKLRPgweeLreFL~ak~sk~FElyVyTmgtR~YA~~IlrLLDPdgklF~~r~l~~RIisres-g~~K----sL~rLf~ 328 (788)
.+++.||..++.++|+ .+.|.+.|.|++.+.++..+++.+.- .+| +-++|.++ +..| -+.....
T Consensus 81 ~~~~~pg~~e~L~~L~---~~g~~~~ivTn~~~~~~~~~l~~~~l--~~~------~~i~~~~~~~~~KP~p~~~~~~~~ 149 (218)
T PRK11587 81 GITALPGAIALLNHLN---KLGIPWAIVTSGSVPVASARHKAAGL--PAP------EVFVTAERVKRGKPEPDAYLLGAQ 149 (218)
T ss_pred CceeCcCHHHHHHHHH---HcCCcEEEEcCCCchHHHHHHHhcCC--CCc------cEEEEHHHhcCCCCCcHHHHHHHH
Confidence 4578899777777775 46799999999999988777665432 122 23555432 1112 1222222
Q ss_pred cCCCCCCeEEEEeCCcc-ccccCCCCCeEE
Q 003896 329 RGLCHPKMAMVIDDRCK-VWEDKDQPRVHV 357 (788)
Q Consensus 329 ~g~~d~~~VVIIDDR~d-VW~~~~~NlI~V 357 (788)
.-++.++.+|+|+|+.. +-..... ++..
T Consensus 150 ~~g~~p~~~l~igDs~~di~aA~~a-G~~~ 178 (218)
T PRK11587 150 LLGLAPQECVVVEDAPAGVLSGLAA-GCHV 178 (218)
T ss_pred HcCCCcccEEEEecchhhhHHHHHC-CCEE
Confidence 11246889999999863 3333333 4443
No 50
>PRK13225 phosphoglycolate phosphatase; Provisional
Probab=96.76 E-value=0.0051 Score=65.08 Aligned_cols=80 Identities=18% Similarity=0.157 Sum_probs=52.5
Q ss_pred EEecCChHHHHHHHHHhccccEEEEEEeCCchHHHHHHHHhhCCCCCccccccccCceEeecCCCcc--cHhhhcccCCC
Q 003896 255 VRLRPAWEDLRSYLIAKGRKRFEVYVCTMAERDYALEMWRLLDPEGHLIGSKQLLDRVVCVKSGSRK--SLLNVFQRGLC 332 (788)
Q Consensus 255 VKLRPgweeLreFL~ak~sk~FElyVyTmgtR~YA~~IlrLLDPdgklF~~r~l~~RIisresg~~K--sL~rLf~~g~~ 332 (788)
+++-|+..++.++|+ .+.+.+.|.|++.+.++..+++.++-. .+|. .+++.+....| .+..++..-..
T Consensus 141 ~~l~pg~~e~L~~L~---~~gi~laIvSn~~~~~~~~~L~~~gl~-~~F~------~vi~~~~~~~k~~~~~~~l~~~~~ 210 (273)
T PRK13225 141 LQLFPGVADLLAQLR---SRSLCLGILSSNSRQNIEAFLQRQGLR-SLFS------VVQAGTPILSKRRALSQLVAREGW 210 (273)
T ss_pred CCcCCCHHHHHHHHH---HCCCeEEEEeCCCHHHHHHHHHHcCCh-hheE------EEEecCCCCCCHHHHHHHHHHhCc
Confidence 456799777777775 467899999999999999999987653 2343 34444332111 22322221124
Q ss_pred CCCeEEEEeCCc
Q 003896 333 HPKMAMVIDDRC 344 (788)
Q Consensus 333 d~~~VVIIDDR~ 344 (788)
.++.+|+|+|+.
T Consensus 211 ~p~~~l~IGDs~ 222 (273)
T PRK13225 211 QPAAVMYVGDET 222 (273)
T ss_pred ChhHEEEECCCH
Confidence 577899999985
No 51
>PLN02575 haloacid dehalogenase-like hydrolase
Probab=96.65 E-value=0.012 Score=65.85 Aligned_cols=94 Identities=14% Similarity=0.158 Sum_probs=60.9
Q ss_pred EEecCChHHHHHHHHHhccccEEEEEEeCCchHHHHHHHHhhCCCCCccccccccCceEeecCCC-ccc----Hhhhccc
Q 003896 255 VRLRPAWEDLRSYLIAKGRKRFEVYVCTMAERDYALEMWRLLDPEGHLIGSKQLLDRVVCVKSGS-RKS----LLNVFQR 329 (788)
Q Consensus 255 VKLRPgweeLreFL~ak~sk~FElyVyTmgtR~YA~~IlrLLDPdgklF~~r~l~~RIisresg~-~Ks----L~rLf~~ 329 (788)
+.+.||..+++++|+ ...+.+.|.|++.+.|+..+++.++=. .+| +.|++.++.. .|- +......
T Consensus 215 ~~l~pGa~ElL~~Lk---~~GiklaIaSn~~~~~~~~~L~~lgL~-~yF------d~Iv~sddv~~~KP~Peifl~A~~~ 284 (381)
T PLN02575 215 YRLRTGSQEFVNVLM---NYKIPMALVSTRPRKTLENAIGSIGIR-GFF------SVIVAAEDVYRGKPDPEMFIYAAQL 284 (381)
T ss_pred CCcCcCHHHHHHHHH---HCCCeEEEEeCCCHHHHHHHHHHcCCH-HHc------eEEEecCcCCCCCCCHHHHHHHHHH
Confidence 456799888888886 467999999999999999999987543 233 4677775432 221 1111111
Q ss_pred CCCCCCeEEEEeCCccccccCCCCCeEEe
Q 003896 330 GLCHPKMAMVIDDRCKVWEDKDQPRVHVV 358 (788)
Q Consensus 330 g~~d~~~VVIIDDR~dVW~~~~~NlI~VV 358 (788)
-+..++.+|+|+|+..=-....+.++.++
T Consensus 285 lgl~Peecl~IGDS~~DIeAAk~AGm~~I 313 (381)
T PLN02575 285 LNFIPERCIVFGNSNQTVEAAHDARMKCV 313 (381)
T ss_pred cCCCcccEEEEcCCHHHHHHHHHcCCEEE
Confidence 12468889999998653333333355544
No 52
>TIGR01533 lipo_e_P4 5'-nucleotidase, lipoprotein e(P4) family. which in turn belongs to the haloacid dehalogenase (HAD) superfamily of aspartate-dependent hydrolases. Members are found on the outer membrane of Gram-negative bacteria and the cytoplasmic membrane of Gram-positive bacteria. Most members have classic lipoprotein signal sequences. A critical role of this 5'-nucleotidase in Haemophilus influenzae is the degradation of external riboside in order to allow transport into the cell. An earlier suggested role in hemin transport is no longer current. This enzyme may also have other physiologically significant roles.
Probab=96.55 E-value=0.014 Score=62.23 Aligned_cols=78 Identities=12% Similarity=0.062 Sum_probs=45.9
Q ss_pred CChHHHHHHHHHhccccEEEEEEeCCchHHHHHHHHhhCCCCCccccccccCceEeecCCCcccHhhhcccCCCCCCeEE
Q 003896 259 PAWEDLRSYLIAKGRKRFEVYVCTMAERDYALEMWRLLDPEGHLIGSKQLLDRVVCVKSGSRKSLLNVFQRGLCHPKMAM 338 (788)
Q Consensus 259 PgweeLreFL~ak~sk~FElyVyTmgtR~YA~~IlrLLDPdgklF~~r~l~~RIisresg~~KsL~rLf~~g~~d~~~VV 338 (788)
||..++..+|. .+-..|+|.|+..+.+.....+.|.-.|--.- ..+.++.++++..|...+..-. -.-..++
T Consensus 121 pGA~e~L~~L~---~~G~~v~iVTnR~~~~~~~T~~~Lkk~Gi~~~---~~d~lllr~~~~~K~~rr~~I~--~~y~Ivl 192 (266)
T TIGR01533 121 AGALDFLNYAN---SKGVKIFYVSNRSEKEKAATLKNLKRFGFPQA---DEEHLLLKKDKSSKESRRQKVQ--KDYEIVL 192 (266)
T ss_pred ccHHHHHHHHH---HCCCeEEEEeCCCcchHHHHHHHHHHcCcCCC---CcceEEeCCCCCCcHHHHHHHH--hcCCEEE
Confidence 88555555554 56788999999987777766655543332110 1256666655554543322211 1246789
Q ss_pred EEeCCc
Q 003896 339 VIDDRC 344 (788)
Q Consensus 339 IIDDR~ 344 (788)
.|+|+.
T Consensus 193 ~vGD~~ 198 (266)
T TIGR01533 193 LFGDNL 198 (266)
T ss_pred EECCCH
Confidence 999973
No 53
>PRK13223 phosphoglycolate phosphatase; Provisional
Probab=96.55 E-value=0.0036 Score=65.62 Aligned_cols=81 Identities=15% Similarity=0.226 Sum_probs=53.7
Q ss_pred EEEecCChHHHHHHHHHhccccEEEEEEeCCchHHHHHHHHhhCCCCCccccccccCceEeecC-CCcc----cHhhhcc
Q 003896 254 LVRLRPAWEDLRSYLIAKGRKRFEVYVCTMAERDYALEMWRLLDPEGHLIGSKQLLDRVVCVKS-GSRK----SLLNVFQ 328 (788)
Q Consensus 254 ~VKLRPgweeLreFL~ak~sk~FElyVyTmgtR~YA~~IlrLLDPdgklF~~r~l~~RIisres-g~~K----sL~rLf~ 328 (788)
.+.++|+..++.+.|+ .+.+.++|.|++.+.++..+++.++-. .+| +.++|.++ +..| -+..++.
T Consensus 99 ~~~~~~g~~e~L~~Lk---~~g~~l~ivTn~~~~~~~~~l~~~~i~-~~f------~~i~~~d~~~~~Kp~p~~~~~~~~ 168 (272)
T PRK13223 99 LTVVYPGVRDTLKWLK---KQGVEMALITNKPERFVAPLLDQMKIG-RYF------RWIIGGDTLPQKKPDPAALLFVMK 168 (272)
T ss_pred CCccCCCHHHHHHHHH---HCCCeEEEEECCcHHHHHHHHHHcCcH-hhC------eEEEecCCCCCCCCCcHHHHHHHH
Confidence 3577899666666665 357899999999999999998876532 233 35665543 2122 1333333
Q ss_pred cCCCCCCeEEEEeCCc
Q 003896 329 RGLCHPKMAMVIDDRC 344 (788)
Q Consensus 329 ~g~~d~~~VVIIDDR~ 344 (788)
..+..++.+|+|+|+.
T Consensus 169 ~~g~~~~~~l~IGD~~ 184 (272)
T PRK13223 169 MAGVPPSQSLFVGDSR 184 (272)
T ss_pred HhCCChhHEEEECCCH
Confidence 2235788999999985
No 54
>PRK06698 bifunctional 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase/phosphatase; Validated
Probab=96.51 E-value=0.016 Score=65.11 Aligned_cols=91 Identities=15% Similarity=0.270 Sum_probs=58.7
Q ss_pred EEEecCChHHHHHHHHHhccccEEEEEEeCCchHHHHHHHHhhCCCCCccccccccCceEeecCCC--cc--cHhhhccc
Q 003896 254 LVRLRPAWEDLRSYLIAKGRKRFEVYVCTMAERDYALEMWRLLDPEGHLIGSKQLLDRVVCVKSGS--RK--SLLNVFQR 329 (788)
Q Consensus 254 ~VKLRPgweeLreFL~ak~sk~FElyVyTmgtR~YA~~IlrLLDPdgklF~~r~l~~RIisresg~--~K--sL~rLf~~ 329 (788)
.+++.||..+++++|+ .+.+-+.|.|++.+.|+..+++.++=+. +| +.++|.++.. .| -+......
T Consensus 328 ~~~l~pG~~e~L~~Lk---~~g~~l~IvS~~~~~~~~~~l~~~~l~~-~f------~~i~~~d~v~~~~kP~~~~~al~~ 397 (459)
T PRK06698 328 KGALYPNVKEIFTYIK---ENNCSIYIASNGLTEYLRAIVSYYDLDQ-WV------TETFSIEQINSLNKSDLVKSILNK 397 (459)
T ss_pred CCCcCCCHHHHHHHHH---HCCCeEEEEeCCchHHHHHHHHHCCcHh-hc------ceeEecCCCCCCCCcHHHHHHHHh
Confidence 3578899888888886 4679999999999999999999866432 33 3566654321 12 12222221
Q ss_pred CCCCCCeEEEEeCCcc-ccccCCCCCeEE
Q 003896 330 GLCHPKMAMVIDDRCK-VWEDKDQPRVHV 357 (788)
Q Consensus 330 g~~d~~~VVIIDDR~d-VW~~~~~NlI~V 357 (788)
.+++.+|+|.|+.. +-..+.. ++.+
T Consensus 398 --l~~~~~v~VGDs~~Di~aAk~A-G~~~ 423 (459)
T PRK06698 398 --YDIKEAAVVGDRLSDINAAKDN-GLIA 423 (459)
T ss_pred --cCcceEEEEeCCHHHHHHHHHC-CCeE
Confidence 24577999999863 3333333 4443
No 55
>TIGR01428 HAD_type_II 2-haloalkanoic acid dehalogenase, type II. Note that the Type I HAD enzymes have not yet been fully characterized, but clearly utilize a substantially different catalytic mechanism and are thus unlikely to be related.
Probab=96.49 E-value=0.003 Score=61.81 Aligned_cols=78 Identities=8% Similarity=0.071 Sum_probs=49.0
Q ss_pred EecCChHHHHHHHHHhccc-cEEEEEEeCCchHHHHHHHHhhCCCCCccccccccCceEeecC-CCcc-c---Hhhhccc
Q 003896 256 RLRPAWEDLRSYLIAKGRK-RFEVYVCTMAERDYALEMWRLLDPEGHLIGSKQLLDRVVCVKS-GSRK-S---LLNVFQR 329 (788)
Q Consensus 256 KLRPgweeLreFL~ak~sk-~FElyVyTmgtR~YA~~IlrLLDPdgklF~~r~l~~RIisres-g~~K-s---L~rLf~~ 329 (788)
++.|+ +.++|+ ++.+ -|.++|.|++.+.++..+++.+.=. .+| +.|++.++ +..| + +..++..
T Consensus 92 ~~~~~---~~~~L~-~L~~~g~~~~i~Sn~~~~~~~~~l~~~gl~-~~f------d~i~~s~~~~~~KP~~~~~~~~~~~ 160 (198)
T TIGR01428 92 PPHPD---VPAGLR-ALKERGYRLAILSNGSPAMLKSLVKHAGLD-DPF------DAVLSADAVRAYKPAPQVYQLALEA 160 (198)
T ss_pred CCCCC---HHHHHH-HHHHCCCeEEEEeCCCHHHHHHHHHHCCCh-hhh------heeEehhhcCCCCCCHHHHHHHHHH
Confidence 56789 555555 4444 4999999999999999998876421 233 45665533 2222 1 1222221
Q ss_pred CCCCCCeEEEEeCCc
Q 003896 330 GLCHPKMAMVIDDRC 344 (788)
Q Consensus 330 g~~d~~~VVIIDDR~ 344 (788)
-+..++.+++|+|+.
T Consensus 161 ~~~~p~~~~~vgD~~ 175 (198)
T TIGR01428 161 LGVPPDEVLFVASNP 175 (198)
T ss_pred hCCChhhEEEEeCCH
Confidence 124688899999986
No 56
>PHA02597 30.2 hypothetical protein; Provisional
Probab=96.32 E-value=0.012 Score=57.77 Aligned_cols=96 Identities=10% Similarity=0.136 Sum_probs=53.3
Q ss_pred EEEecCChHHHHHHHHHhccccEEEEEEeCCchHHHHHHHHhhCCCCCccccccccCceEeecCCCcc--cHhhhcccCC
Q 003896 254 LVRLRPAWEDLRSYLIAKGRKRFEVYVCTMAERDYALEMWRLLDPEGHLIGSKQLLDRVVCVKSGSRK--SLLNVFQRGL 331 (788)
Q Consensus 254 ~VKLRPgweeLreFL~ak~sk~FElyVyTmgtR~YA~~IlrLLDPdgklF~~r~l~~RIisresg~~K--sL~rLf~~g~ 331 (788)
.+++.||+.++.+.|+ +.|.+++.|++.......+.+.+.-. .+|.. ++..+++.++...| -+..+...-
T Consensus 72 ~~~~~pG~~e~L~~L~----~~~~~~i~Tn~~~~~~~~~~~~~~l~-~~f~~--~f~~i~~~~~~~~kp~~~~~a~~~~- 143 (197)
T PHA02597 72 YLSAYDDALDVINKLK----EDYDFVAVTALGDSIDALLNRQFNLN-ALFPG--AFSEVLMCGHDESKEKLFIKAKEKY- 143 (197)
T ss_pred hccCCCCHHHHHHHHH----hcCCEEEEeCCccchhHHHHhhCCHH-HhCCC--cccEEEEeccCcccHHHHHHHHHHh-
Confidence 3567899666555554 44678888888776655566655432 44432 33456665443322 122222221
Q ss_pred CCCCeEEEEeCCccccccCCCC--CeEEe
Q 003896 332 CHPKMAMVIDDRCKVWEDKDQP--RVHVV 358 (788)
Q Consensus 332 ~d~~~VVIIDDR~dVW~~~~~N--lI~VV 358 (788)
.++.+|+|||+..==....+. +|.++
T Consensus 144 -~~~~~v~vgDs~~di~aA~~a~~Gi~~i 171 (197)
T PHA02597 144 -GDRVVCFVDDLAHNLDAAHEALSQLPVI 171 (197)
T ss_pred -CCCcEEEeCCCHHHHHHHHHHHcCCcEE
Confidence 157799999997643333334 55544
No 57
>PRK09552 mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase; Reviewed
Probab=96.28 E-value=0.017 Score=58.22 Aligned_cols=39 Identities=10% Similarity=0.280 Sum_probs=33.1
Q ss_pred EEecCChHHHHHHHHHhccccEEEEEEeCCchHHHHHHHHhh
Q 003896 255 VRLRPAWEDLRSYLIAKGRKRFEVYVCTMAERDYALEMWRLL 296 (788)
Q Consensus 255 VKLRPgweeLreFL~ak~sk~FElyVyTmgtR~YA~~IlrLL 296 (788)
++++||..++.++|+ ..-+.++|.|+|.+.|+..+++.+
T Consensus 73 ~~l~pG~~e~l~~l~---~~g~~~~IvS~~~~~~i~~il~~~ 111 (219)
T PRK09552 73 AEIREGFHEFVQFVK---ENNIPFYVVSGGMDFFVYPLLQGL 111 (219)
T ss_pred CCcCcCHHHHHHHHH---HcCCeEEEECCCcHHHHHHHHHHh
Confidence 568899777777775 477999999999999999999865
No 58
>TIGR01990 bPGM beta-phosphoglucomutase. The enzyme from L. lactis has been extensively characterized including a remarkable crystal structure which traps the pentacoordinate transition state.
Probab=96.27 E-value=0.02 Score=54.78 Aligned_cols=78 Identities=15% Similarity=0.155 Sum_probs=46.0
Q ss_pred EEecCChHHHHHHHHHhccccEEEEEEeCCchHHHHHHHHhhCCCCCccccccccCceEeecC-CCcc----cHhhhccc
Q 003896 255 VRLRPAWEDLRSYLIAKGRKRFEVYVCTMAERDYALEMWRLLDPEGHLIGSKQLLDRVVCVKS-GSRK----SLLNVFQR 329 (788)
Q Consensus 255 VKLRPgweeLreFL~ak~sk~FElyVyTmgtR~YA~~IlrLLDPdgklF~~r~l~~RIisres-g~~K----sL~rLf~~ 329 (788)
+++.|++.++++.|+ ...+.++|.|++. .+..+++.++=. . +++.+++.++ +..| -+..++..
T Consensus 86 ~~~~pg~~~~L~~L~---~~g~~~~i~s~~~--~~~~~l~~~~l~-~------~f~~~~~~~~~~~~kp~p~~~~~~~~~ 153 (185)
T TIGR01990 86 ADVLPGIKNLLDDLK---KNNIKIALASASK--NAPTVLEKLGLI-D------YFDAIVDPAEIKKGKPDPEIFLAAAEG 153 (185)
T ss_pred cccCccHHHHHHHHH---HCCCeEEEEeCCc--cHHHHHHhcCcH-h------hCcEEEehhhcCCCCCChHHHHHHHHH
Confidence 356799666666665 4579999999875 356666655422 2 2345655533 2222 12222222
Q ss_pred CCCCCCeEEEEeCCc
Q 003896 330 GLCHPKMAMVIDDRC 344 (788)
Q Consensus 330 g~~d~~~VVIIDDR~ 344 (788)
-.++++.+|+|+|+.
T Consensus 154 ~~~~~~~~v~vgD~~ 168 (185)
T TIGR01990 154 LGVSPSECIGIEDAQ 168 (185)
T ss_pred cCCCHHHeEEEecCH
Confidence 225678899999985
No 59
>TIGR02252 DREG-2 REG-2-like, HAD superfamily (subfamily IA) hydrolase. Most likely, these sequences, like the vast majority of HAD sequences, represent phosphatase enzymes.
Probab=96.24 E-value=0.066 Score=52.56 Aligned_cols=79 Identities=19% Similarity=0.176 Sum_probs=47.6
Q ss_pred EEecCChHHHHHHHHHhccccEEEEEEeCCchHHHHHHHHhhCCCCCccccccccCceEeecC-CCcc-c---Hhhhccc
Q 003896 255 VRLRPAWEDLRSYLIAKGRKRFEVYVCTMAERDYALEMWRLLDPEGHLIGSKQLLDRVVCVKS-GSRK-S---LLNVFQR 329 (788)
Q Consensus 255 VKLRPgweeLreFL~ak~sk~FElyVyTmgtR~YA~~IlrLLDPdgklF~~r~l~~RIisres-g~~K-s---L~rLf~~ 329 (788)
+++-|++.++.++|+ .+.|.+.|.|++.+.+ ..+++.++=. .+++.|++.++ +..| + +..++..
T Consensus 104 ~~~~~g~~~~l~~L~---~~g~~~~i~Sn~~~~~-~~~l~~~~l~-------~~fd~i~~s~~~~~~KP~~~~~~~~~~~ 172 (203)
T TIGR02252 104 WQVYPDAIKLLKDLR---ERGLILGVISNFDSRL-RGLLEALGLL-------EYFDFVVTSYEVGAEKPDPKIFQEALER 172 (203)
T ss_pred ceeCcCHHHHHHHHH---HCCCEEEEEeCCchhH-HHHHHHCCcH-------HhcceEEeecccCCCCCCHHHHHHHHHH
Confidence 367899666666665 3469999999998764 5555544221 22345655432 3333 1 2223322
Q ss_pred CCCCCCeEEEEeCCc
Q 003896 330 GLCHPKMAMVIDDRC 344 (788)
Q Consensus 330 g~~d~~~VVIIDDR~ 344 (788)
-++.++.+|+|+|+.
T Consensus 173 ~~~~~~~~~~IgD~~ 187 (203)
T TIGR02252 173 AGISPEEALHIGDSL 187 (203)
T ss_pred cCCChhHEEEECCCc
Confidence 235789999999984
No 60
>PRK13478 phosphonoacetaldehyde hydrolase; Provisional
Probab=96.22 E-value=0.046 Score=56.70 Aligned_cols=95 Identities=15% Similarity=0.038 Sum_probs=57.3
Q ss_pred EEecCChHHHHHHHHHhccccEEEEEEeCCchHHHHHHHHhhCCCCCccccccccCceEeecCC-Ccc-c---Hhhhccc
Q 003896 255 VRLRPAWEDLRSYLIAKGRKRFEVYVCTMAERDYALEMWRLLDPEGHLIGSKQLLDRVVCVKSG-SRK-S---LLNVFQR 329 (788)
Q Consensus 255 VKLRPgweeLreFL~ak~sk~FElyVyTmgtR~YA~~IlrLLDPdgklF~~r~l~~RIisresg-~~K-s---L~rLf~~ 329 (788)
+++-||..+++++|+ .+.|.+.|.|++.+.++..+++.+.-.+ +|. +.|+|.++. ..| + +..++..
T Consensus 100 ~~~~pg~~elL~~L~---~~g~~l~I~T~~~~~~~~~~l~~~~l~~-~~~-----d~i~~~~~~~~~KP~p~~~~~a~~~ 170 (267)
T PRK13478 100 ATPIPGVLEVIAALR---ARGIKIGSTTGYTREMMDVVVPLAAAQG-YRP-----DHVVTTDDVPAGRPYPWMALKNAIE 170 (267)
T ss_pred CCCCCCHHHHHHHHH---HCCCEEEEEcCCcHHHHHHHHHHHhhcC-CCc-----eEEEcCCcCCCCCCChHHHHHHHHH
Confidence 466799888777776 4679999999999999999998754332 221 456665432 222 1 2222221
Q ss_pred CCCC-CCeEEEEeCCccccccCCCCCeEEe
Q 003896 330 GLCH-PKMAMVIDDRCKVWEDKDQPRVHVV 358 (788)
Q Consensus 330 g~~d-~~~VVIIDDR~dVW~~~~~NlI~VV 358 (788)
-++. ++-+|+|+|+..=-....+.++.++
T Consensus 171 l~~~~~~e~l~IGDs~~Di~aA~~aG~~~i 200 (267)
T PRK13478 171 LGVYDVAACVKVDDTVPGIEEGLNAGMWTV 200 (267)
T ss_pred cCCCCCcceEEEcCcHHHHHHHHHCCCEEE
Confidence 1233 5789999998632222223355443
No 61
>COG0546 Gph Predicted phosphatases [General function prediction only]
Probab=96.21 E-value=0.024 Score=57.43 Aligned_cols=89 Identities=17% Similarity=0.164 Sum_probs=55.0
Q ss_pred EEEecCChHHHHHHHHHhccccEEEEEEeCCchHHHHHHHHhhCCCCCccccccccCceEeecCC-Ccc----cHhhhcc
Q 003896 254 LVRLRPAWEDLRSYLIAKGRKRFEVYVCTMAERDYALEMWRLLDPEGHLIGSKQLLDRVVCVKSG-SRK----SLLNVFQ 328 (788)
Q Consensus 254 ~VKLRPgweeLreFL~ak~sk~FElyVyTmgtR~YA~~IlrLLDPdgklF~~r~l~~RIisresg-~~K----sL~rLf~ 328 (788)
..++-|++.++++-|+ .+-|.+.|+|+..+..+..+++.++=.. +|. -++|-.+. ..| .|..++.
T Consensus 87 ~~~~~~gv~e~L~~L~---~~g~~l~i~T~k~~~~~~~~l~~~gl~~-~F~------~i~g~~~~~~~KP~P~~l~~~~~ 156 (220)
T COG0546 87 ESRLFPGVKELLAALK---SAGYKLGIVTNKPERELDILLKALGLAD-YFD------VIVGGDDVPPPKPDPEPLLLLLE 156 (220)
T ss_pred cCccCCCHHHHHHHHH---hCCCeEEEEeCCcHHHHHHHHHHhCCcc-ccc------eEEcCCCCCCCCcCHHHHHHHHH
Confidence 3456699777777776 5779999999999999999999866553 333 45552221 222 2333333
Q ss_pred cCCCCCCeEEEEeCCc-cccccCCC
Q 003896 329 RGLCHPKMAMVIDDRC-KVWEDKDQ 352 (788)
Q Consensus 329 ~g~~d~~~VVIIDDR~-dVW~~~~~ 352 (788)
..+.+++.+|+|.|+. |+=..+..
T Consensus 157 ~~~~~~~~~l~VGDs~~Di~aA~~A 181 (220)
T COG0546 157 KLGLDPEEALMVGDSLNDILAAKAA 181 (220)
T ss_pred HhCCChhheEEECCCHHHHHHHHHc
Confidence 2223444666666654 45555544
No 62
>PRK10563 6-phosphogluconate phosphatase; Provisional
Probab=96.19 E-value=0.0022 Score=63.75 Aligned_cols=92 Identities=9% Similarity=-0.012 Sum_probs=57.1
Q ss_pred EEecCChHHHHHHHHHhccccEEEEEEeCCchHHHHHHHHhhCCCCCccccccccCceEeec-CCCcc----cHhhhccc
Q 003896 255 VRLRPAWEDLRSYLIAKGRKRFEVYVCTMAERDYALEMWRLLDPEGHLIGSKQLLDRVVCVK-SGSRK----SLLNVFQR 329 (788)
Q Consensus 255 VKLRPgweeLreFL~ak~sk~FElyVyTmgtR~YA~~IlrLLDPdgklF~~r~l~~RIisre-sg~~K----sL~rLf~~ 329 (788)
+++.|+ +.++|+ .+ .+.+.|.|++.+.++..+++.++=. .+|. +-++|.+ .+..| -+..++..
T Consensus 87 ~~~~~g---v~~~L~-~L--~~~~~ivTn~~~~~~~~~l~~~~l~-~~F~-----~~v~~~~~~~~~KP~p~~~~~a~~~ 154 (221)
T PRK10563 87 LEPIAG---ANALLE-SI--TVPMCVVSNGPVSKMQHSLGKTGML-HYFP-----DKLFSGYDIQRWKPDPALMFHAAEA 154 (221)
T ss_pred CCcCCC---HHHHHH-Hc--CCCEEEEeCCcHHHHHHHHHhcChH-HhCc-----ceEeeHHhcCCCCCChHHHHHHHHH
Confidence 556689 667776 44 3899999999999999988865433 2232 2344542 23222 22223322
Q ss_pred CCCCCCeEEEEeCCccccccCCCCCeEEe
Q 003896 330 GLCHPKMAMVIDDRCKVWEDKDQPRVHVV 358 (788)
Q Consensus 330 g~~d~~~VVIIDDR~dVW~~~~~NlI~VV 358 (788)
.++.++.+|+|+|+..=.....+-++.++
T Consensus 155 ~~~~p~~~l~igDs~~di~aA~~aG~~~i 183 (221)
T PRK10563 155 MNVNVENCILVDDSSAGAQSGIAAGMEVF 183 (221)
T ss_pred cCCCHHHeEEEeCcHhhHHHHHHCCCEEE
Confidence 23567889999998765544444466654
No 63
>COG1011 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=96.17 E-value=0.0035 Score=61.83 Aligned_cols=76 Identities=16% Similarity=0.117 Sum_probs=51.4
Q ss_pred HHHHHHHHHhccccEEEEEEeCCchHHHHHHHHhhCCCCCccccccccCceEee-cCCCcc----cHhhhcccCCCCCCe
Q 003896 262 EDLRSYLIAKGRKRFEVYVCTMAERDYALEMWRLLDPEGHLIGSKQLLDRVVCV-KSGSRK----SLLNVFQRGLCHPKM 336 (788)
Q Consensus 262 eeLreFL~ak~sk~FElyVyTmgtR~YA~~IlrLLDPdgklF~~r~l~~RIisr-esg~~K----sL~rLf~~g~~d~~~ 336 (788)
.++.++|+ +..++|.|+|.|||.+.++...++-+. =..+|. .|++. +.|..| -...++...++.++.
T Consensus 102 ~~~~~~L~-~l~~~~~l~ilTNg~~~~~~~~l~~~g-l~~~Fd------~v~~s~~~g~~KP~~~~f~~~~~~~g~~p~~ 173 (229)
T COG1011 102 PEALEALK-ELGKKYKLGILTNGARPHQERKLRQLG-LLDYFD------AVFISEDVGVAKPDPEIFEYALEKLGVPPEE 173 (229)
T ss_pred hhHHHHHH-HHHhhccEEEEeCCChHHHHHHHHHcC-Chhhhh------eEEEecccccCCCCcHHHHHHHHHcCCCcce
Confidence 33888887 666669999999999999999998765 333444 55555 445444 222222222356899
Q ss_pred EEEEeCCcc
Q 003896 337 AMVIDDRCK 345 (788)
Q Consensus 337 VVIIDDR~d 345 (788)
++.|||+..
T Consensus 174 ~l~VgD~~~ 182 (229)
T COG1011 174 ALFVGDSLE 182 (229)
T ss_pred EEEECCChh
Confidence 999999754
No 64
>COG4996 Predicted phosphatase [General function prediction only]
Probab=96.13 E-value=0.019 Score=56.46 Aligned_cols=88 Identities=19% Similarity=0.237 Sum_probs=59.3
Q ss_pred EEEEecCChHHHHHHHHHhc-cccEEEEEEeCCchHHHHHHHHhhCCCCCccccccccCceEeecCCCc--ccHhhhcc-
Q 003896 253 VLVRLRPAWEDLRSYLIAKG-RKRFEVYVCTMAERDYALEMWRLLDPEGHLIGSKQLLDRVVCVKSGSR--KSLLNVFQ- 328 (788)
Q Consensus 253 y~VKLRPgweeLreFL~ak~-sk~FElyVyTmgtR~YA~~IlrLLDPdgklF~~r~l~~RIisresg~~--KsL~rLf~- 328 (788)
.-|+|+|+ +++||+ .+ +.-|-+..+|=.-.+-|.++++.||-. .||. .-| .+---. +=|..++.
T Consensus 38 ~ev~L~~~---v~~~l~-warnsG~i~~~~sWN~~~kA~~aLral~~~-~yFh-----y~V--iePhP~K~~ML~~llr~ 105 (164)
T COG4996 38 REVHLFPD---VKETLK-WARNSGYILGLASWNFEDKAIKALRALDLL-QYFH-----YIV--IEPHPYKFLMLSQLLRE 105 (164)
T ss_pred eEEEEcHH---HHHHHH-HHHhCCcEEEEeecCchHHHHHHHHHhchh-hhEE-----EEE--ecCCChhHHHHHHHHHH
Confidence 46899999 555554 22 567889999999999999999999987 4565 222 222112 22444443
Q ss_pred -----cCCCCCCeEEEEeCCc----cccccCCC
Q 003896 329 -----RGLCHPKMAMVIDDRC----KVWEDKDQ 352 (788)
Q Consensus 329 -----~g~~d~~~VVIIDDR~----dVW~~~~~ 352 (788)
+.-..|..+|.+|||. ++|.+-.+
T Consensus 106 i~~er~~~ikP~~Ivy~DDR~iH~~~Iwe~~G~ 138 (164)
T COG4996 106 INTERNQKIKPSEIVYLDDRRIHFGNIWEYLGN 138 (164)
T ss_pred HHHhhccccCcceEEEEecccccHHHHHHhcCC
Confidence 1224678999999996 67877643
No 65
>KOG3109 consensus Haloacid dehalogenase-like hydrolase [General function prediction only]
Probab=96.08 E-value=0.028 Score=59.20 Aligned_cols=82 Identities=21% Similarity=0.333 Sum_probs=59.8
Q ss_pred EEEecCChHHHHHHHHHhccccEEEEEEeCCchHHHHHHHHhhCCCCCccccccccCceEeecCCC-----------ccc
Q 003896 254 LVRLRPAWEDLRSYLIAKGRKRFEVYVCTMAERDYALEMWRLLDPEGHLIGSKQLLDRVVCVKSGS-----------RKS 322 (788)
Q Consensus 254 ~VKLRPgweeLreFL~ak~sk~FElyVyTmgtR~YA~~IlrLLDPdgklF~~r~l~~RIisresg~-----------~Ks 322 (788)
|=+|-|-|. ||++|- ++.+++ .++||||-|..|..+++.|.-+ .+++.|+|.+..+ .+.
T Consensus 96 lq~LkPD~~-LRnlLL-~l~~r~-k~~FTNa~k~HA~r~Lk~LGie-------DcFegii~~e~~np~~~~~vcKP~~~a 165 (244)
T KOG3109|consen 96 LQDLKPDPV-LRNLLL-SLKKRR-KWIFTNAYKVHAIRILKKLGIE-------DCFEGIICFETLNPIEKTVVCKPSEEA 165 (244)
T ss_pred HhhcCCCHH-HHHHHH-hCcccc-EEEecCCcHHHHHHHHHHhChH-------HhccceeEeeccCCCCCceeecCCHHH
Confidence 444666654 999998 788887 9999999999999999988765 3557888875322 334
Q ss_pred HhhhcccCCC-CCCeEEEEeCCcc
Q 003896 323 LLNVFQRGLC-HPKMAMVIDDRCK 345 (788)
Q Consensus 323 L~rLf~~g~~-d~~~VVIIDDR~d 345 (788)
.+.++.-.+. ++..++++||+..
T Consensus 166 fE~a~k~agi~~p~~t~FfDDS~~ 189 (244)
T KOG3109|consen 166 FEKAMKVAGIDSPRNTYFFDDSER 189 (244)
T ss_pred HHHHHHHhCCCCcCceEEEcCchh
Confidence 4555543223 4899999999853
No 66
>PRK13582 thrH phosphoserine phosphatase; Provisional
Probab=96.01 E-value=0.026 Score=55.33 Aligned_cols=45 Identities=18% Similarity=0.216 Sum_probs=33.9
Q ss_pred EEecCChHHHHHHHHHhccccEEEEEEeCCchHHHHHHHHhhCCCCCccc
Q 003896 255 VRLRPAWEDLRSYLIAKGRKRFEVYVCTMAERDYALEMWRLLDPEGHLIG 304 (788)
Q Consensus 255 VKLRPgweeLreFL~ak~sk~FElyVyTmgtR~YA~~IlrLLDPdgklF~ 304 (788)
+++.||+.++.++|+ +. +.+.|.|++.+.++..+++.++-. .+|.
T Consensus 67 ~~~~pg~~e~L~~L~---~~-~~~~IvS~~~~~~~~~~l~~~gl~-~~f~ 111 (205)
T PRK13582 67 LDPLPGAVEFLDWLR---ER-FQVVILSDTFYEFAGPLMRQLGWP-TLFC 111 (205)
T ss_pred CCCCCCHHHHHHHHH---hc-CCEEEEeCCcHHHHHHHHHHcCCc-hhhc
Confidence 345799777666665 24 899999999999999999987643 3444
No 67
>TIGR03333 salvage_mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase. Members of this family are the methionine salvage enzyme MnxX, a member of the HAD-superfamily hydrolases, subfamily IB (see TIGR01488). Members are found in Bacillus subtilis and related species, paired with MtnW (TIGR03332). In most species that recycle methionine from methylthioadenosine, the single protein MtnC replaces the MtnW/MtnX pair. In B. subtilis, mtnX was first known as ykrX.
Probab=95.97 E-value=0.061 Score=54.12 Aligned_cols=47 Identities=6% Similarity=0.197 Sum_probs=37.6
Q ss_pred EEecCChHHHHHHHHHhccccEEEEEEeCCchHHHHHHHHhhCCCCCccc
Q 003896 255 VRLRPAWEDLRSYLIAKGRKRFEVYVCTMAERDYALEMWRLLDPEGHLIG 304 (788)
Q Consensus 255 VKLRPgweeLreFL~ak~sk~FElyVyTmgtR~YA~~IlrLLDPdgklF~ 304 (788)
+++|||+.++.++|+ ...+.++|.|.|.+.|+..+++.+.+...++.
T Consensus 69 ~~l~pg~~e~l~~l~---~~g~~~~IvS~~~~~~i~~il~~~~~~~~i~~ 115 (214)
T TIGR03333 69 AEIREGFREFVAFIN---EHGIPFYVISGGMDFFVYPLLEGIVEKDRIYC 115 (214)
T ss_pred CcccccHHHHHHHHH---HCCCeEEEECCCcHHHHHHHHHhhCCcccEEe
Confidence 678999777777775 46799999999999999999998765444444
No 68
>PLN02940 riboflavin kinase
Probab=95.79 E-value=0.021 Score=63.22 Aligned_cols=81 Identities=15% Similarity=0.077 Sum_probs=52.8
Q ss_pred EEecCChHHHHHHHHHhccccEEEEEEeCCchHHHHHHHH-hhCCCCCccccccccCceEeecCC-Ccc----cHhhhcc
Q 003896 255 VRLRPAWEDLRSYLIAKGRKRFEVYVCTMAERDYALEMWR-LLDPEGHLIGSKQLLDRVVCVKSG-SRK----SLLNVFQ 328 (788)
Q Consensus 255 VKLRPgweeLreFL~ak~sk~FElyVyTmgtR~YA~~Ilr-LLDPdgklF~~r~l~~RIisresg-~~K----sL~rLf~ 328 (788)
+++.||..+++++|+ .+.+.+.|.|++.+.++..+++ .++= ..+| +.|+|.++. ..| -+..++.
T Consensus 92 ~~l~pGv~elL~~Lk---~~g~~l~IvTn~~~~~~~~~l~~~~gl-~~~F------d~ii~~d~v~~~KP~p~~~~~a~~ 161 (382)
T PLN02940 92 IKALPGANRLIKHLK---SHGVPMALASNSPRANIEAKISCHQGW-KESF------SVIVGGDEVEKGKPSPDIFLEAAK 161 (382)
T ss_pred CCCCcCHHHHHHHHH---HCCCcEEEEeCCcHHHHHHHHHhccCh-HhhC------CEEEehhhcCCCCCCHHHHHHHHH
Confidence 456799777777776 4679999999999999988776 4332 1233 466666442 223 1222222
Q ss_pred cCCCCCCeEEEEeCCcc
Q 003896 329 RGLCHPKMAMVIDDRCK 345 (788)
Q Consensus 329 ~g~~d~~~VVIIDDR~d 345 (788)
.-+..++.+|+|+|+..
T Consensus 162 ~lgv~p~~~l~VGDs~~ 178 (382)
T PLN02940 162 RLNVEPSNCLVIEDSLP 178 (382)
T ss_pred HcCCChhHEEEEeCCHH
Confidence 22246788999999864
No 69
>PRK09456 ?-D-glucose-1-phosphatase; Provisional
Probab=95.55 E-value=0.041 Score=54.41 Aligned_cols=83 Identities=20% Similarity=0.175 Sum_probs=46.9
Q ss_pred EEEecCChHHHHHHHHHhccccEEEEEEeCCchHHHHHHHHhhCCCCCccccccccCceEeecC-CCccc----Hhhhcc
Q 003896 254 LVRLRPAWEDLRSYLIAKGRKRFEVYVCTMAERDYALEMWRLLDPEGHLIGSKQLLDRVVCVKS-GSRKS----LLNVFQ 328 (788)
Q Consensus 254 ~VKLRPgweeLreFL~ak~sk~FElyVyTmgtR~YA~~IlrLLDPdgklF~~r~l~~RIisres-g~~Ks----L~rLf~ 328 (788)
+..+.|++.++.+.|+ ++-|.++|.|++.+.....+..... .+ ..+++.+++.+. +..|- ...+..
T Consensus 82 ~~~~~~g~~e~L~~l~---~~g~~~~i~Sn~~~~~~~~~~~~~~---~l---~~~fd~v~~s~~~~~~KP~p~~~~~~~~ 152 (199)
T PRK09456 82 FVALRPEVIAIMHKLR---EQGHRVVVLSNTNRLHTTFWPEEYP---EV---RAAADHIYLSQDLGMRKPEARIYQHVLQ 152 (199)
T ss_pred HhccCHHHHHHHHHHH---hCCCcEEEEcCCchhhHHHHHhhch---hH---HHhcCEEEEecccCCCCCCHHHHHHHHH
Confidence 4567899555555554 3569999999999877654432210 11 112345655532 33221 122222
Q ss_pred cCCCCCCeEEEEeCCcc
Q 003896 329 RGLCHPKMAMVIDDRCK 345 (788)
Q Consensus 329 ~g~~d~~~VVIIDDR~d 345 (788)
.-++.++.+|+|||+..
T Consensus 153 ~~~~~p~~~l~vgD~~~ 169 (199)
T PRK09456 153 AEGFSAADAVFFDDNAD 169 (199)
T ss_pred HcCCChhHeEEeCCCHH
Confidence 22257899999999853
No 70
>PRK08238 hypothetical protein; Validated
Probab=95.49 E-value=0.047 Score=62.60 Aligned_cols=85 Identities=16% Similarity=0.205 Sum_probs=53.9
Q ss_pred EecCChHHHHHHHHHhccccEEEEEEeCCchHHHHHHHHhhCCCCCccccccccCceEeecCCC-----cc--cHhhhcc
Q 003896 256 RLRPAWEDLRSYLIAKGRKRFEVYVCTMAERDYALEMWRLLDPEGHLIGSKQLLDRVVCVKSGS-----RK--SLLNVFQ 328 (788)
Q Consensus 256 KLRPgweeLreFL~ak~sk~FElyVyTmgtR~YA~~IlrLLDPdgklF~~r~l~~RIisresg~-----~K--sL~rLf~ 328 (788)
.++|+ +.++|+..-++-+.+.|.|++.+.|++.+++.++- | +.+++-+++. .| .|...++
T Consensus 72 p~~pg---a~e~L~~lk~~G~~v~LaTas~~~~a~~i~~~lGl----F------d~Vigsd~~~~~kg~~K~~~l~~~l~ 138 (479)
T PRK08238 72 PYNEE---VLDYLRAERAAGRKLVLATASDERLAQAVAAHLGL----F------DGVFASDGTTNLKGAAKAAALVEAFG 138 (479)
T ss_pred CCChh---HHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHcCC----C------CEEEeCCCccccCCchHHHHHHHHhC
Confidence 35688 55566522267799999999999999999998853 2 3555554321 12 2333333
Q ss_pred cCCCCCCeEEEEeCCc---cccccCCCCCeEEec
Q 003896 329 RGLCHPKMAMVIDDRC---KVWEDKDQPRVHVVP 359 (788)
Q Consensus 329 ~g~~d~~~VVIIDDR~---dVW~~~~~NlI~VVp 359 (788)
.+.++.+.|+. .+|....+ .+.|-|
T Consensus 139 -----~~~~~yvGDS~~Dlp~~~~A~~-av~Vn~ 166 (479)
T PRK08238 139 -----ERGFDYAGNSAADLPVWAAARR-AIVVGA 166 (479)
T ss_pred -----ccCeeEecCCHHHHHHHHhCCC-eEEECC
Confidence 34356678877 58877764 555533
No 71
>TIGR01684 viral_ppase viral phosphatase. These proteins also include an N-terminal domain (ca. 125 aas) that is unique to this clade.
Probab=95.37 E-value=0.033 Score=60.67 Aligned_cols=41 Identities=17% Similarity=0.214 Sum_probs=32.1
Q ss_pred CChHHHHHHHHHhccccEEEEEEeCCchHHHHHHHHhhCCCCCcc
Q 003896 259 PAWEDLRSYLIAKGRKRFEVYVCTMAERDYALEMWRLLDPEGHLI 303 (788)
Q Consensus 259 PgweeLreFL~ak~sk~FElyVyTmgtR~YA~~IlrLLDPdgklF 303 (788)
|+..++++.|+ ++.+-+.|+|.+.|.+|..+++.++-++ +|
T Consensus 149 PgV~EaL~~Lk---ekGikLaIaTS~~Re~v~~~L~~lGLd~-YF 189 (301)
T TIGR01684 149 PRIYDSLTELK---KRGCILVLWSYGDRDHVVESMRKVKLDR-YF 189 (301)
T ss_pred HHHHHHHHHHH---HCCCEEEEEECCCHHHHHHHHHHcCCCc-cc
Confidence 88555555555 4568999999999999999999888764 44
No 72
>TIGR02247 HAD-1A3-hyp Epoxide hydrolase N-terminal domain-like phosphatase. These appear to be members of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases by general homology and the conservation of all of the recognized catalytic motifs (although the first motif is unusual in the replacement of the more common aspartate with glycine...). The variable domain is found in between motifs 1 and 2, indicating membership in subfamily I and phylogeny and prediction of the alpha helical nature of the variable domain (by PSI-PRED) indicate membership in subfamily IA.
Probab=95.07 E-value=0.069 Score=52.85 Aligned_cols=84 Identities=25% Similarity=0.211 Sum_probs=44.4
Q ss_pred EEEecCChHHHHHHHHHhccccEEEEEEeCCchHHHHHHHHhhCCCCCccccccccCceEeecC-CCccc----Hhhhcc
Q 003896 254 LVRLRPAWEDLRSYLIAKGRKRFEVYVCTMAERDYALEMWRLLDPEGHLIGSKQLLDRVVCVKS-GSRKS----LLNVFQ 328 (788)
Q Consensus 254 ~VKLRPgweeLreFL~ak~sk~FElyVyTmgtR~YA~~IlrLLDPdgklF~~r~l~~RIisres-g~~Ks----L~rLf~ 328 (788)
.+++.|++.++.+.|+ .+.|.++|.|++...+...+..++ ..+ +. .+++.|++..+ +..|- +..+..
T Consensus 92 ~~~~~~~~~~~L~~L~---~~g~~l~i~Sn~~~~~~~~~~~~~-~~~-l~---~~fd~v~~s~~~~~~KP~p~~~~~~~~ 163 (211)
T TIGR02247 92 NTKLRPSMMAAIKTLR---AKGFKTACITNNFPTDHSAEEALL-PGD-IM---ALFDAVVESCLEGLRKPDPRIYQLMLE 163 (211)
T ss_pred ccccChhHHHHHHHHH---HCCCeEEEEeCCCCccchhhhHhh-hhh-hH---hhCCEEEEeeecCCCCCCHHHHHHHHH
Confidence 4667899666555554 356999999999766522222221 111 11 12345655432 32231 222222
Q ss_pred cCCCCCCeEEEEeCCcc
Q 003896 329 RGLCHPKMAMVIDDRCK 345 (788)
Q Consensus 329 ~g~~d~~~VVIIDDR~d 345 (788)
.-++.++.+|+|||+..
T Consensus 164 ~~g~~~~~~l~i~D~~~ 180 (211)
T TIGR02247 164 RLGVAPEECVFLDDLGS 180 (211)
T ss_pred HcCCCHHHeEEEcCCHH
Confidence 21246788888899754
No 73
>COG0637 Predicted phosphatase/phosphohexomutase [General function prediction only]
Probab=94.79 E-value=0.036 Score=56.70 Aligned_cols=83 Identities=16% Similarity=0.068 Sum_probs=49.8
Q ss_pred EEecCChHHHHHHHHHhccccEEEEEEeCCchHHHHHHHHhhCCCCCccccccccCceEeec---CCCcccHhhhcccCC
Q 003896 255 VRLRPAWEDLRSYLIAKGRKRFEVYVCTMAERDYALEMWRLLDPEGHLIGSKQLLDRVVCVK---SGSRKSLLNVFQRGL 331 (788)
Q Consensus 255 VKLRPgweeLreFL~ak~sk~FElyVyTmgtR~YA~~IlrLLDPdgklF~~r~l~~RIisre---sg~~KsL~rLf~~g~ 331 (788)
++..||..++.+.|+ ++..-+-|.|.+.+.-+..+++.+.-.. +|......+.+...| +...+..+++.
T Consensus 85 ~~~~pGv~~~l~~L~---~~~i~~avaS~s~~~~~~~~L~~~gl~~-~f~~~v~~~dv~~~KP~Pd~yL~Aa~~Lg---- 156 (221)
T COG0637 85 LKPIPGVVELLEQLK---ARGIPLAVASSSPRRAAERVLARLGLLD-YFDVIVTADDVARGKPAPDIYLLAAERLG---- 156 (221)
T ss_pred CCCCccHHHHHHHHH---hcCCcEEEecCChHHHHHHHHHHccChh-hcchhccHHHHhcCCCCCHHHHHHHHHcC----
Confidence 456699666666664 2338889999999999999998765442 344211112221111 11244555543
Q ss_pred CCCCeEEEEeCCcc
Q 003896 332 CHPKMAMVIDDRCK 345 (788)
Q Consensus 332 ~d~~~VVIIDDR~d 345 (788)
.++..+|+|+|+..
T Consensus 157 v~P~~CvviEDs~~ 170 (221)
T COG0637 157 VDPEECVVVEDSPA 170 (221)
T ss_pred CChHHeEEEecchh
Confidence 36899999999853
No 74
>TIGR01672 AphA HAD superfamily (subfamily IIIB) phosphatase, TIGR01672. Supporting evidence for the inclusion in the HAD superfamily, whose phosphatase members are magnesium dependent, is the inhibition by EDTA and calcium ions, and stimulation by magnesium ion.
Probab=94.68 E-value=0.15 Score=53.72 Aligned_cols=38 Identities=8% Similarity=-0.001 Sum_probs=29.6
Q ss_pred CChHHHHHHHHHhccccEEEEEEeCC----chHHHHHHHHhhCCC
Q 003896 259 PAWEDLRSYLIAKGRKRFEVYVCTMA----ERDYALEMWRLLDPE 299 (788)
Q Consensus 259 PgweeLreFL~ak~sk~FElyVyTmg----tR~YA~~IlrLLDPd 299 (788)
|++.++.++|. .+-+.++|.|+. .+.++..+++.+.-.
T Consensus 117 ~~a~elL~~l~---~~G~~i~iVTnr~~~k~~~~a~~ll~~lGi~ 158 (237)
T TIGR01672 117 EVARQLIDMHQ---RRGDAIFFVTGRTPGKTDTVSKTLAKNFHIP 158 (237)
T ss_pred hHHHHHHHHHH---HCCCEEEEEeCCCCCcCHHHHHHHHHHhCCc
Confidence 45667777775 577999999998 677999999876654
No 75
>PRK11133 serB phosphoserine phosphatase; Provisional
Probab=94.67 E-value=0.21 Score=54.65 Aligned_cols=42 Identities=17% Similarity=0.116 Sum_probs=33.9
Q ss_pred EEecCChHHHHHHHHHhccccEEEEEEeCCchHHHHHHHHhhCCC
Q 003896 255 VRLRPAWEDLRSYLIAKGRKRFEVYVCTMAERDYALEMWRLLDPE 299 (788)
Q Consensus 255 VKLRPgweeLreFL~ak~sk~FElyVyTmgtR~YA~~IlrLLDPd 299 (788)
+.++||.+++.+.|+ +.-|.+.|.|.|...+++.+.+.|+-+
T Consensus 180 l~l~pGa~elL~~Lk---~~G~~~aIvSgg~~~~~~~l~~~Lgld 221 (322)
T PRK11133 180 LPLMPGLTELVLKLQ---ALGWKVAIASGGFTYFADYLRDKLRLD 221 (322)
T ss_pred CCCChhHHHHHHHHH---HcCCEEEEEECCcchhHHHHHHHcCCC
Confidence 457899777777776 466899999999999999999876543
No 76
>TIGR02137 HSK-PSP phosphoserine phosphatase/homoserine phosphotransferase bifunctional protein. This enzyme is a member of the haloacid dehalogenase (HAD) superfamily, specifically part of subfamily IB by virtue of the presence of an alpha helical domain in between motifs I and II of the HAD domain . The closest homologs to this family are monofunctional phosphoserine phosphatases (TIGR00338).
Probab=94.66 E-value=0.066 Score=54.50 Aligned_cols=44 Identities=16% Similarity=0.225 Sum_probs=34.1
Q ss_pred EecCChHHHHHHHHHhccccEEEEEEeCCchHHHHHHHHhhCCCCCccc
Q 003896 256 RLRPAWEDLRSYLIAKGRKRFEVYVCTMAERDYALEMWRLLDPEGHLIG 304 (788)
Q Consensus 256 KLRPgweeLreFL~ak~sk~FElyVyTmgtR~YA~~IlrLLDPdgklF~ 304 (788)
+++|+..++.+.|+ +.+.+.|.|.+.+.|+..+++.|+-+ .+|.
T Consensus 68 ~l~pga~ell~~lk----~~~~~~IVS~~~~~~~~~il~~lgi~-~~~a 111 (203)
T TIGR02137 68 KPLEGAVEFVDWLR----ERFQVVILSDTFYEFSQPLMRQLGFP-TLLC 111 (203)
T ss_pred CCCccHHHHHHHHH----hCCeEEEEeCChHHHHHHHHHHcCCc-hhhc
Confidence 46799666555554 34699999999999999999987765 3555
No 77
>TIGR01686 FkbH FkbH-like domain. The C-terminal portion of this domain is unique to this family (by BLAST).
Probab=94.61 E-value=0.1 Score=56.06 Aligned_cols=81 Identities=14% Similarity=0.110 Sum_probs=44.9
Q ss_pred cCChHHHHHHHHHhc-cccEEEEEEeCCchHHHHHHHHhhCCCCCccccccccCceEeecCCCcccHhhhcccCCCCCCe
Q 003896 258 RPAWEDLRSYLIAKG-RKRFEVYVCTMAERDYALEMWRLLDPEGHLIGSKQLLDRVVCVKSGSRKSLLNVFQRGLCHPKM 336 (788)
Q Consensus 258 RPgweeLreFL~ak~-sk~FElyVyTmgtR~YA~~IlrLLDPdgklF~~r~l~~RIisresg~~KsL~rLf~~g~~d~~~ 336 (788)
.|+ +.++|+ ++ .+-+-+.|+|+..+..|..+++. -|+ .|+-..++.-+.+........+..+....+..++-
T Consensus 33 ~~~---~~e~L~-~L~~~Gi~lai~S~n~~~~a~~~l~~-~~~--~~~~~~~f~~~~~~~~pk~~~i~~~~~~l~i~~~~ 105 (320)
T TIGR01686 33 HKT---LQEKIK-TLKKQGFLLALASKNDEDDAKKVFER-RKD--FILQAEDFDARSINWGPKSESLRKIAKKLNLGTDS 105 (320)
T ss_pred HHH---HHHHHH-HHHhCCCEEEEEcCCCHHHHHHHHHh-Ccc--ccCcHHHeeEEEEecCchHHHHHHHHHHhCCCcCc
Confidence 367 555555 33 46689999999999999998875 111 12211122222221111222343333322246889
Q ss_pred EEEEeCCcc
Q 003896 337 AMVIDDRCK 345 (788)
Q Consensus 337 VVIIDDR~d 345 (788)
+|+|||++.
T Consensus 106 ~vfidD~~~ 114 (320)
T TIGR01686 106 FLFIDDNPA 114 (320)
T ss_pred EEEECCCHH
Confidence 999999653
No 78
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=94.47 E-value=0.14 Score=63.94 Aligned_cols=82 Identities=17% Similarity=0.023 Sum_probs=54.2
Q ss_pred ecCChHHHHHHHHHhccccEEEEEEeCCchHHHHHHHHhhCCCCCccccccccCceEeecCC-Cccc----HhhhcccCC
Q 003896 257 LRPAWEDLRSYLIAKGRKRFEVYVCTMAERDYALEMWRLLDPEGHLIGSKQLLDRVVCVKSG-SRKS----LLNVFQRGL 331 (788)
Q Consensus 257 LRPgweeLreFL~ak~sk~FElyVyTmgtR~YA~~IlrLLDPdgklF~~r~l~~RIisresg-~~Ks----L~rLf~~g~ 331 (788)
+-||..+++++|+ ++-|.+.|.|++.+.++..+++.++=...+| +.++|.++. ..|- +..+...-+
T Consensus 162 ~~pG~~elL~~Lk---~~G~~l~IvSn~~~~~~~~~L~~~gl~~~~F------d~iv~~~~~~~~KP~Pe~~~~a~~~lg 232 (1057)
T PLN02919 162 GFPGALELITQCK---NKGLKVAVASSADRIKVDANLAAAGLPLSMF------DAIVSADAFENLKPAPDIFLAAAKILG 232 (1057)
T ss_pred cCccHHHHHHHHH---hCCCeEEEEeCCcHHHHHHHHHHcCCChhHC------CEEEECcccccCCCCHHHHHHHHHHcC
Confidence 4699777777776 4679999999999999999998765433344 466666442 2221 112222112
Q ss_pred CCCCeEEEEeCCcccc
Q 003896 332 CHPKMAMVIDDRCKVW 347 (788)
Q Consensus 332 ~d~~~VVIIDDR~dVW 347 (788)
..++.+|+|+|+..=.
T Consensus 233 v~p~e~v~IgDs~~Di 248 (1057)
T PLN02919 233 VPTSECVVIEDALAGV 248 (1057)
T ss_pred cCcccEEEEcCCHHHH
Confidence 4688899999986433
No 79
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=94.45 E-value=0.064 Score=56.10 Aligned_cols=90 Identities=11% Similarity=0.097 Sum_probs=58.9
Q ss_pred ecCChHHHHHHHHHhccccEEEEEEeCCchHHHHHHHHhhCCCCCccccccccCceEeec--------CCC--------c
Q 003896 257 LRPAWEDLRSYLIAKGRKRFEVYVCTMAERDYALEMWRLLDPEGHLIGSKQLLDRVVCVK--------SGS--------R 320 (788)
Q Consensus 257 LRPgweeLreFL~ak~sk~FElyVyTmgtR~YA~~IlrLLDPdgklF~~r~l~~RIisre--------sg~--------~ 320 (788)
+.|++.++...|+ ..-+.+.|.|+..+.++..+++.|+-.+.+|. .+++.+ .+. .
T Consensus 188 ~~~~~~~~l~~l~---~~g~~i~i~T~r~~~~~~~~l~~l~~~~~~f~------~i~~~~~~~~~~~~~~~~kp~p~~~~ 258 (300)
T PHA02530 188 PNPMVVELVKMYK---AAGYEIIVVSGRDGVCEEDTVEWLRQTDIWFD------DLIGRPPDMHFQREQGDKRPDDVVKE 258 (300)
T ss_pred CChhHHHHHHHHH---hCCCEEEEEeCCChhhHHHHHHHHHHcCCchh------hhhCCcchhhhcccCCCCCCcHHHHH
Confidence 3488544444443 45699999999999999999999988887775 233332 111 2
Q ss_pred ccHhhhcccCCCCCCeEEEEeCCccccccCCCCCeEEe
Q 003896 321 KSLLNVFQRGLCHPKMAMVIDDRCKVWEDKDQPRVHVV 358 (788)
Q Consensus 321 KsL~rLf~~g~~d~~~VVIIDDR~dVW~~~~~NlI~VV 358 (788)
+.|.++.. -.++.+|.|||+..+=....+.+|.++
T Consensus 259 ~~l~~~~~---~~~~~~~~vgD~~~d~~~a~~~Gi~~i 293 (300)
T PHA02530 259 EIFWEKIA---PKYDVLLAVDDRDQVVDMWRRIGLECW 293 (300)
T ss_pred HHHHHHhc---cCceEEEEEcCcHHHHHHHHHhCCeEE
Confidence 23444322 146899999999886555444455543
No 80
>PHA03398 viral phosphatase superfamily protein; Provisional
Probab=94.17 E-value=0.17 Score=55.40 Aligned_cols=38 Identities=13% Similarity=0.086 Sum_probs=30.5
Q ss_pred CChHHHHHHHHHhccccEEEEEEeCCchHHHHHHHHhhCCC
Q 003896 259 PAWEDLRSYLIAKGRKRFEVYVCTMAERDYALEMWRLLDPE 299 (788)
Q Consensus 259 PgweeLreFL~ak~sk~FElyVyTmgtR~YA~~IlrLLDPd 299 (788)
|+..++++.|+ .+-+-+.|+|+|.+.+|..+++.++-+
T Consensus 151 p~V~EtL~eLk---ekGikLaIvTNg~Re~v~~~Le~lgL~ 188 (303)
T PHA03398 151 PFVYDSLDELK---ERGCVLVLWSYGNREHVVHSLKETKLE 188 (303)
T ss_pred hhHHHHHHHHH---HCCCEEEEEcCCChHHHHHHHHHcCCC
Confidence 78555555554 466999999999999999999987775
No 81
>PF03368 Dicer_dimer: Dicer dimerisation domain; InterPro: IPR005034 This domain is found in members of the Dicer protein family of dsRNA nucleases. This entry represents a dsRNA-binding domain. RNA interference (RNAi) is an ancient gene-silencing process that plays a fundamental role in diverse eukaryotic functions including viral defence, chromatin remodelling, genome rearrangement, developmental timing, brain morphogenesis, and stem cell maintenance. All RNAi pathways require the multidomain ribonuclease Dicer, which initiates RNAi by cleaving double-stranded RNA (dsRNA) substrates into small fragments ~25 nuleotides in length. A typical eukaryotic Dicer consists of a helicase domain (PDOC51192 from PROSITEDOC), a domain of unknown function, and a PAZ domain (PDOC50821 from PROSITEDOC) at the amino (N)-terminus as well as two ribonuclease III domains (PDOC00448 from PROSITEDOC) and a dsRNA-binding domain (dsRBD) (PDOC50137 from PROSITEDOC) at the carboxy (C)-terminus. The domain of unknown function of ~100 amino acids is predicted to adopt the canonical alpha-beta-beta-beta-alpha-fold found in all dsRBDs [, , , ].; GO: 0016891 endoribonuclease activity, producing 5'-phosphomonoesters; PDB: 2KOU_A.
Probab=94.08 E-value=0.31 Score=44.12 Aligned_cols=62 Identities=24% Similarity=0.163 Sum_probs=42.9
Q ss_pred HHHHHHHHHhC------CCCceEEEEeeeCCCceEEEEEEECCe-----EeEEEecCCHHHHHHHHHHHHHHHHHHh
Q 003896 628 IGVLQEIGKRC------SSKVEFRSVVSTSKDLQFSVEVLFTGE-----KIGVGMGKTRKDAQQQAAENALHYLAEK 693 (788)
Q Consensus 628 KS~LQE~~QK~------~~~peYelveesGH~~~FtveV~I~Gk-----k~G~G~GsSKKEAEQ~AAK~AL~~L~~~ 693 (788)
+++|+.||++. ...|.|.+.... ..|.++|.+-.. ..|. .-.|||.|++.||-+|+..|.+.
T Consensus 2 i~lL~~yC~~Lp~d~~~~~~P~~~~~~~~---~~~~c~v~LP~~~pi~~i~g~-~~~sk~~AK~sAAf~Ac~~L~~~ 74 (90)
T PF03368_consen 2 ISLLNRYCSTLPSDSFTNLKPEFEIEKIG---SGFICTVILPINSPIRSIEGP-PMRSKKLAKRSAAFEACKKLHEA 74 (90)
T ss_dssp HHHHHHHHTTSSS-TT--SS-EEEEEE-----G-EEEEEE--TT-SS--EEEE---SSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCCCccCCceEEEEEcC---CcEEEEEECCCCCCCCeEEcc-ccccHHHHHHHHHHHHHHHHHHc
Confidence 57899999996 346999986543 389998888532 3443 55799999999999999999764
No 82
>PF13419 HAD_2: Haloacid dehalogenase-like hydrolase; PDB: 2FI1_A 2I6X_A 3SD7_A 4F71_A 4DFD_B 4F72_B 4DCC_A 3DDH_A 3KZX_A 2B0C_A ....
Probab=94.07 E-value=0.12 Score=47.56 Aligned_cols=80 Identities=16% Similarity=0.267 Sum_probs=55.4
Q ss_pred EEEecCChHHHHHHHHHhcc-ccEEEEEEeCCchHHHHHHHHhhCCCCCccccccccCceEeecC-CCccc----Hhhhc
Q 003896 254 LVRLRPAWEDLRSYLIAKGR-KRFEVYVCTMAERDYALEMWRLLDPEGHLIGSKQLLDRVVCVKS-GSRKS----LLNVF 327 (788)
Q Consensus 254 ~VKLRPgweeLreFL~ak~s-k~FElyVyTmgtR~YA~~IlrLLDPdgklF~~r~l~~RIisres-g~~Ks----L~rLf 327 (788)
..++.|+ +.++|+ +++ +.|.++|+|++.+.+...+++.+.-. .+| +.+++.++ +..|. +..+.
T Consensus 75 ~~~~~~~---~~~~L~-~l~~~~~~~~i~Sn~~~~~~~~~l~~~~~~-~~f------~~i~~~~~~~~~Kp~~~~~~~~~ 143 (176)
T PF13419_consen 75 KLQPYPG---VRELLE-RLKAKGIPLVIVSNGSRERIERVLERLGLD-DYF------DEIISSDDVGSRKPDPDAYRRAL 143 (176)
T ss_dssp GEEESTT---HHHHHH-HHHHTTSEEEEEESSEHHHHHHHHHHTTHG-GGC------SEEEEGGGSSSSTTSHHHHHHHH
T ss_pred ccchhhh---hhhhhh-hcccccceeEEeecCCcccccccccccccc-ccc------ccccccchhhhhhhHHHHHHHHH
Confidence 5677899 555665 444 89999999999999999999987544 333 46666643 33332 34443
Q ss_pred ccCCCCCCeEEEEeCCc
Q 003896 328 QRGLCHPKMAMVIDDRC 344 (788)
Q Consensus 328 ~~g~~d~~~VVIIDDR~ 344 (788)
..-++.++.+|.|||+.
T Consensus 144 ~~~~~~p~~~~~vgD~~ 160 (176)
T PF13419_consen 144 EKLGIPPEEILFVGDSP 160 (176)
T ss_dssp HHHTSSGGGEEEEESSH
T ss_pred HHcCCCcceEEEEeCCH
Confidence 32235789999999986
No 83
>PRK11590 hypothetical protein; Provisional
Probab=93.74 E-value=0.13 Score=51.96 Aligned_cols=40 Identities=15% Similarity=0.203 Sum_probs=30.4
Q ss_pred EEecCChHHHH-HHHHHhccccEEEEEEeCCchHHHHHHHHhhC
Q 003896 255 VRLRPAWEDLR-SYLIAKGRKRFEVYVCTMAERDYALEMWRLLD 297 (788)
Q Consensus 255 VKLRPgweeLr-eFL~ak~sk~FElyVyTmgtR~YA~~IlrLLD 297 (788)
++++|+..++. +.|+ +.-+.+.|.|++.+.|+..+++.+.
T Consensus 94 ~~~~pga~e~L~~~l~---~~G~~l~IvSas~~~~~~~il~~l~ 134 (211)
T PRK11590 94 VTAFPVVQERLTTYLL---SSDADVWLITGSPQPLVEQVYFDTP 134 (211)
T ss_pred CcCCccHHHHHHHHHH---hCCCEEEEEeCCcHHHHHHHHHHcc
Confidence 45689944433 3333 4789999999999999999998755
No 84
>COG0560 SerB Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=93.72 E-value=0.15 Score=52.57 Aligned_cols=85 Identities=19% Similarity=0.110 Sum_probs=56.6
Q ss_pred EEecCChHHHHHHHHHhccccEEEEEEeCCchHHHHHHHHhhCCCCCccccc------cccCceEee---cCCCcccHhh
Q 003896 255 VRLRPAWEDLRSYLIAKGRKRFEVYVCTMAERDYALEMWRLLDPEGHLIGSK------QLLDRVVCV---KSGSRKSLLN 325 (788)
Q Consensus 255 VKLRPgweeLreFL~ak~sk~FElyVyTmgtR~YA~~IlrLLDPdgklF~~r------~l~~RIisr---esg~~KsL~r 325 (788)
++++|+.+++..+|+ +.-+.+.|.|.|-..|+..|.+.|.-+..+ +.+ .+..+++.. ..+..+.|.+
T Consensus 76 ~~l~~ga~elv~~lk---~~G~~v~iiSgg~~~lv~~ia~~lg~d~~~-an~l~~~dG~ltG~v~g~~~~~~~K~~~l~~ 151 (212)
T COG0560 76 LRLTPGAEELVAALK---AAGAKVVIISGGFTFLVEPIAERLGIDYVV-ANELEIDDGKLTGRVVGPICDGEGKAKALRE 151 (212)
T ss_pred CcCCccHHHHHHHHH---HCCCEEEEEcCChHHHHHHHHHHhCCchhe-eeEEEEeCCEEeceeeeeecCcchHHHHHHH
Confidence 788899999999998 688999999999999999999987765322 110 012333322 1122345666
Q ss_pred hcccCCCCCCeEEEEeCC
Q 003896 326 VFQRGLCHPKMAMVIDDR 343 (788)
Q Consensus 326 Lf~~g~~d~~~VVIIDDR 343 (788)
++...+..++.++-+-|.
T Consensus 152 ~~~~~g~~~~~~~a~gDs 169 (212)
T COG0560 152 LAAELGIPLEETVAYGDS 169 (212)
T ss_pred HHHHcCCCHHHeEEEcCc
Confidence 665322456677777775
No 85
>TIGR01664 DNA-3'-Pase DNA 3'-phosphatase. The central phosphatase domain is a member of the IIIA subfamily (TIGR01662) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. As is common in this superfamily, the enzyme is magnesium dependent. A difference between this enzyme and other HAD-superfamily phosphatases is in the third conserved catalytic motif which usually contains two conserved aspartate residues believed to be involved in binding the magnesium ion. Here, the second aspartate is usually replaced by an arginine residue which may indicate an interaction with the phosphate backbone of the substrate. Alternatively, there is an additional conserved aspartate downstream of the ususal site which may indicate slightly different fold in this region.
Probab=93.66 E-value=0.23 Score=49.01 Aligned_cols=87 Identities=13% Similarity=0.061 Sum_probs=50.3
Q ss_pred ecCChHHHHHHHHHhccccEEEEEEeCCchH------------HHHHHHHhhCCCCCccccccccCceEeecCC-Ccc--
Q 003896 257 LRPAWEDLRSYLIAKGRKRFEVYVCTMAERD------------YALEMWRLLDPEGHLIGSKQLLDRVVCVKSG-SRK-- 321 (788)
Q Consensus 257 LRPgweeLreFL~ak~sk~FElyVyTmgtR~------------YA~~IlrLLDPdgklF~~r~l~~RIisresg-~~K-- 321 (788)
+-|+..++++.|+ .+.|.+.|.|++... ++..+++.++-. + .-+++.+.+ ..|
T Consensus 43 ~~pgv~e~L~~Lk---~~G~~l~I~TN~~~~~~~~~~~~~~~~~i~~~l~~~gl~---~------~~ii~~~~~~~~KP~ 110 (166)
T TIGR01664 43 LYPEIPAKLQELD---DEGYKIVIFTNQSGIGRGKLSAESFKNKIEAFLEKLKVP---I------QVLAATHAGLYRKPM 110 (166)
T ss_pred ecCCHHHHHHHHH---HCCCEEEEEeCCcccccCcccHHHHHHHHHHHHHHcCCC---E------EEEEecCCCCCCCCc
Confidence 4488666666665 578999999998774 344555554432 1 122333222 122
Q ss_pred --cHhhhcccCC--CCCCeEEEEeCCc---------cccccCCCCCeE
Q 003896 322 --SLLNVFQRGL--CHPKMAMVIDDRC---------KVWEDKDQPRVH 356 (788)
Q Consensus 322 --sL~rLf~~g~--~d~~~VVIIDDR~---------dVW~~~~~NlI~ 356 (788)
-+..+....+ ++++.+++|.|+. |+-..+.. +|.
T Consensus 111 p~~~~~~~~~~~~~~~~~~~v~VGD~~~~~~~~~~~Di~aA~~a-Gi~ 157 (166)
T TIGR01664 111 TGMWEYLQSQYNSPIKMTRSFYVGDAAGRKLDFSDADIKFAKNL-GLE 157 (166)
T ss_pred cHHHHHHHHHcCCCCCchhcEEEECCCCCCCCCchhHHHHHHHC-CCC
Confidence 2333333222 5788999999996 66665543 454
No 86
>PRK10748 flavin mononucleotide phosphatase; Provisional
Probab=92.76 E-value=0.17 Score=51.89 Aligned_cols=86 Identities=13% Similarity=0.070 Sum_probs=48.4
Q ss_pred EEecCChHHHHHHHHHhccccEEEEEEeCCchHHHHHHHHhhCCCCCccccccccCceEeecC-CCccc----Hhhhccc
Q 003896 255 VRLRPAWEDLRSYLIAKGRKRFEVYVCTMAERDYALEMWRLLDPEGHLIGSKQLLDRVVCVKS-GSRKS----LLNVFQR 329 (788)
Q Consensus 255 VKLRPgweeLreFL~ak~sk~FElyVyTmgtR~YA~~IlrLLDPdgklF~~r~l~~RIisres-g~~Ks----L~rLf~~ 329 (788)
+.+-|++ .++|+ .+.+.|-+.|.|+|+..- + .++-..+++.|++.+. +..|- +..+...
T Consensus 112 ~~~~~gv---~~~L~-~L~~~~~l~i~Tn~~~~~-----~-------~~gl~~~fd~i~~~~~~~~~KP~p~~~~~a~~~ 175 (238)
T PRK10748 112 IDVPQAT---HDTLK-QLAKKWPLVAITNGNAQP-----E-------LFGLGDYFEFVLRAGPHGRSKPFSDMYHLAAEK 175 (238)
T ss_pred CCCCccH---HHHHH-HHHcCCCEEEEECCCchH-----H-------HCCcHHhhceeEecccCCcCCCcHHHHHHHHHH
Confidence 4455884 45554 444569999999998751 1 1222233456665533 22232 2222222
Q ss_pred CCCCCCeEEEEeCC--ccccccCCCCCeEE
Q 003896 330 GLCHPKMAMVIDDR--CKVWEDKDQPRVHV 357 (788)
Q Consensus 330 g~~d~~~VVIIDDR--~dVW~~~~~NlI~V 357 (788)
.++.++.+|+|.|+ .||-..+.. ++..
T Consensus 176 ~~~~~~~~~~VGD~~~~Di~~A~~a-G~~~ 204 (238)
T PRK10748 176 LNVPIGEILHVGDDLTTDVAGAIRC-GMQA 204 (238)
T ss_pred cCCChhHEEEEcCCcHHHHHHHHHC-CCeE
Confidence 22568889999887 588776654 4443
No 87
>PRK11009 aphA acid phosphatase/phosphotransferase; Provisional
Probab=92.75 E-value=0.41 Score=50.50 Aligned_cols=40 Identities=8% Similarity=0.014 Sum_probs=29.3
Q ss_pred EEecCChHHHHHHHHHhccccEEEEEEeC----CchHHHHHHHHhhC
Q 003896 255 VRLRPAWEDLRSYLIAKGRKRFEVYVCTM----AERDYALEMWRLLD 297 (788)
Q Consensus 255 VKLRPgweeLreFL~ak~sk~FElyVyTm----gtR~YA~~IlrLLD 297 (788)
.++.|+..++.++|+ .+-++|++.|+ ..+.++..+++.+.
T Consensus 113 a~p~~Ga~elL~~L~---~~G~~I~iVTnR~~~k~~~t~~~Llk~~g 156 (237)
T PRK11009 113 SIPKEVARQLIDMHV---KRGDSIYFITGRTATKTETVSKTLADDFH 156 (237)
T ss_pred CcchHHHHHHHHHHH---HCCCeEEEEeCCCCcccHHHHHHHHHHcC
Confidence 445577666666665 67899999999 45778888888544
No 88
>PLN02770 haloacid dehalogenase-like hydrolase family protein
Probab=91.49 E-value=0.34 Score=50.06 Aligned_cols=94 Identities=16% Similarity=0.140 Sum_probs=60.3
Q ss_pred EEecCChHHHHHHHHHhccccEEEEEEeCCchHHHHHHHHhhCCCCCccccccccCceEeecCC-Cccc----Hhhhccc
Q 003896 255 VRLRPAWEDLRSYLIAKGRKRFEVYVCTMAERDYALEMWRLLDPEGHLIGSKQLLDRVVCVKSG-SRKS----LLNVFQR 329 (788)
Q Consensus 255 VKLRPgweeLreFL~ak~sk~FElyVyTmgtR~YA~~IlrLLDPdgklF~~r~l~~RIisresg-~~Ks----L~rLf~~ 329 (788)
+.+.||+.+++++|+ ++.|.+.|.|++.+.++..+++.++-. .+| +.|+|.++. ..|- +......
T Consensus 107 ~~l~pgv~e~L~~L~---~~g~~l~I~Tn~~~~~~~~~l~~~gl~-~~F------d~iv~~~~~~~~KP~p~~~~~a~~~ 176 (248)
T PLN02770 107 LKPLNGLYKLKKWIE---DRGLKRAAVTNAPRENAELMISLLGLS-DFF------QAVIIGSECEHAKPHPDPYLKALEV 176 (248)
T ss_pred CCcCccHHHHHHHHH---HcCCeEEEEeCCCHHHHHHHHHHcCCh-hhC------cEEEecCcCCCCCCChHHHHHHHHH
Confidence 467799777777776 467999999999999999999987654 234 466666542 2221 2222221
Q ss_pred CCCCCCeEEEEeCCccccccCCCCCeEEe
Q 003896 330 GLCHPKMAMVIDDRCKVWEDKDQPRVHVV 358 (788)
Q Consensus 330 g~~d~~~VVIIDDR~dVW~~~~~NlI~VV 358 (788)
-++.++.+++|+|+..=-....+.+|.++
T Consensus 177 ~~~~~~~~l~vgDs~~Di~aA~~aGi~~i 205 (248)
T PLN02770 177 LKVSKDHTFVFEDSVSGIKAGVAAGMPVV 205 (248)
T ss_pred hCCChhHEEEEcCCHHHHHHHHHCCCEEE
Confidence 12567889999998732222233456544
No 89
>PF12689 Acid_PPase: Acid Phosphatase; InterPro: IPR010036 This entry represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterised as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues [, ].; GO: 0016791 phosphatase activity; PDB: 1U7P_A 1U7O_A 2WM8_A.
Probab=90.69 E-value=1.2 Score=45.06 Aligned_cols=88 Identities=19% Similarity=0.267 Sum_probs=44.0
Q ss_pred EEEEecCChHHHHHHHHHhccccEEEEEEe-CCchHHHHHHHHhhCCC---CCccccccccCceEeecCCC-cccHhhhc
Q 003896 253 VLVRLRPAWEDLRSYLIAKGRKRFEVYVCT-MAERDYALEMWRLLDPE---GHLIGSKQLLDRVVCVKSGS-RKSLLNVF 327 (788)
Q Consensus 253 y~VKLRPgweeLreFL~ak~sk~FElyVyT-mgtR~YA~~IlrLLDPd---gklF~~r~l~~RIisresg~-~KsL~rLf 327 (788)
.-|++-|.+.+++.-|+ ..-..|-|.+ ..+...|.+++++|+-. +....-..+++. .-...|+ .+.+.++.
T Consensus 42 ~~v~lypdv~~iL~~L~---~~gv~lavASRt~~P~~A~~~L~~l~i~~~~~~~~~~~~~F~~-~eI~~gsK~~Hf~~i~ 117 (169)
T PF12689_consen 42 EEVSLYPDVPEILQELK---ERGVKLAVASRTDEPDWARELLKLLEIDDADGDGVPLIEYFDY-LEIYPGSKTTHFRRIH 117 (169)
T ss_dssp -EE---TTHHHHHHHHH---HCT--EEEEE--S-HHHHHHHHHHTT-C----------CCECE-EEESSS-HHHHHHHHH
T ss_pred CEEEeCcCHHHHHHHHH---HCCCEEEEEECCCChHHHHHHHHhcCCCccccccccchhhcch-hheecCchHHHHHHHH
Confidence 45778899666666665 4788999998 67889999999997765 111111111111 1122233 44566555
Q ss_pred ccCCCCCCeEEEEeCCc
Q 003896 328 QRGLCHPKMAMVIDDRC 344 (788)
Q Consensus 328 ~~g~~d~~~VVIIDDR~ 344 (788)
..-+...+-++++||..
T Consensus 118 ~~tgI~y~eMlFFDDe~ 134 (169)
T PF12689_consen 118 RKTGIPYEEMLFFDDES 134 (169)
T ss_dssp HHH---GGGEEEEES-H
T ss_pred HhcCCChhHEEEecCch
Confidence 43234667899999963
No 90
>TIGR01449 PGP_bact 2-phosphoglycolate phosphatase, prokaryotic. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolase enzymes (pfam00702).
Probab=90.65 E-value=0.63 Score=45.74 Aligned_cols=95 Identities=19% Similarity=0.108 Sum_probs=60.2
Q ss_pred EEEecCChHHHHHHHHHhccccEEEEEEeCCchHHHHHHHHhhCCCCCccccccccCceEeecCC-Ccc----cHhhhcc
Q 003896 254 LVRLRPAWEDLRSYLIAKGRKRFEVYVCTMAERDYALEMWRLLDPEGHLIGSKQLLDRVVCVKSG-SRK----SLLNVFQ 328 (788)
Q Consensus 254 ~VKLRPgweeLreFL~ak~sk~FElyVyTmgtR~YA~~IlrLLDPdgklF~~r~l~~RIisresg-~~K----sL~rLf~ 328 (788)
.+++.|+..++.+.|+ .+.|.+.|.|++.+.++..+++.++=.+ +| +.++|.++. ..| -+..++.
T Consensus 83 ~~~~~~g~~~~L~~l~---~~g~~~~i~S~~~~~~~~~~l~~~~l~~-~f------~~~~~~~~~~~~Kp~p~~~~~~~~ 152 (213)
T TIGR01449 83 LTSVFPGVEATLGALR---AKGLRLGLVTNKPTPLARPLLELLGLAK-YF------SVLIGGDSLAQRKPHPDPLLLAAE 152 (213)
T ss_pred cCccCCCHHHHHHHHH---HCCCeEEEEeCCCHHHHHHHHHHcCcHh-hC------cEEEecCCCCCCCCChHHHHHHHH
Confidence 4678999666666664 3569999999999999999999875432 33 456665432 222 2333333
Q ss_pred cCCCCCCeEEEEeCCccccccCCCCCeEEe
Q 003896 329 RGLCHPKMAMVIDDRCKVWEDKDQPRVHVV 358 (788)
Q Consensus 329 ~g~~d~~~VVIIDDR~dVW~~~~~NlI~VV 358 (788)
.-++.++.+++|+|+..=.....+.++.++
T Consensus 153 ~~~~~~~~~~~igDs~~d~~aa~~aG~~~i 182 (213)
T TIGR01449 153 RLGVAPQQMVYVGDSRVDIQAARAAGCPSV 182 (213)
T ss_pred HcCCChhHeEEeCCCHHHHHHHHHCCCeEE
Confidence 222467889999999654433333455544
No 91
>PF06888 Put_Phosphatase: Putative Phosphatase; InterPro: IPR016965 This group represents phosphatases related to PHOSPHO1 and PHOSPHO2 []. It includes plant phosphatases with homology to the haloacid dehalogenase (HAD) superfamily [, ]. PHOSPHO1 is a phosphoethanolamine/phosphocholine phosphatase [], while PHOSPHO2 has high activity toward pyridoxal 5'-phosphate (PLP), and it is active at much lower level toward pyrophosphate, phosphoethanolamine (PEA)and phosphocholine (PCho) []. ; GO: 0016791 phosphatase activity
Probab=89.55 E-value=1.4 Score=46.75 Aligned_cols=40 Identities=15% Similarity=0.335 Sum_probs=31.3
Q ss_pred ecCChHHHHHHHHHhccccEEEEEEeCCchHHHHHHHHhhC
Q 003896 257 LRPAWEDLRSYLIAKGRKRFEVYVCTMAERDYALEMWRLLD 297 (788)
Q Consensus 257 LRPgweeLreFL~ak~sk~FElyVyTmgtR~YA~~IlrLLD 297 (788)
+-||..++..||. +-...|+++|-.-|..-|-+.|++.-+
T Consensus 72 ~~pgm~~~l~~l~-~~~~~~~~~IiSDaNs~fI~~iL~~~g 111 (234)
T PF06888_consen 72 IDPGMKELLRFLA-KNQRGFDLIIISDANSFFIETILEHHG 111 (234)
T ss_pred CCccHHHHHHHHH-hcCCCceEEEEeCCcHhHHHHHHHhCC
Confidence 3488667777774 346799999999999999999987543
No 92
>KOG0323 consensus TFIIF-interacting CTD phosphatases, including NLI-interacting factor [Transcription]
Probab=89.21 E-value=0.87 Score=54.34 Aligned_cols=46 Identities=22% Similarity=0.229 Sum_probs=33.5
Q ss_pred hcccchHHHHHHHhhhcchhhhhhhhHHHHHhhhhhhcccccCCCCCCCCccccccccCC
Q 003896 372 ANAVPVLCVARNVACNVRGCFFKEFDENLLRSISEVFYEDEAVNLPAAPDVSNYLMSEDA 431 (788)
Q Consensus 372 ~~~~p~L~~a~~VL~~Vh~~fFk~~De~l~~rI~e~~~e~~~~~~~~~pdV~n~l~~e~~ 431 (788)
....+.|+.+..+|.+||..||...+ +.......+||+-.|-+-..
T Consensus 394 ~~~D~~L~~~~kvl~~vH~~ff~~~~--------------~~~e~~~~~Dvr~~i~~~~~ 439 (635)
T KOG0323|consen 394 SDEDGELANLLKVLKPVHKGFFAKYD--------------EVEETLESPDVRLLIPELRT 439 (635)
T ss_pred cccchhHHHHhhhhcccchhhhhccc--------------cccccccCCChhhhhhhhhh
Confidence 44456899999999999999999876 11233446888888765543
No 93
>TIGR02254 YjjG/YfnB HAD superfamily (subfamily IA) hydrolase, TIGR02254. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549). Most likely, these enzymes are phosphatases.
Probab=88.85 E-value=0.8 Score=45.15 Aligned_cols=91 Identities=16% Similarity=0.216 Sum_probs=57.5
Q ss_pred EEEecCChHHHHHHHHHhccccEEEEEEeCCchHHHHHHHHhhCCCCCccccccccCceEeecC-CCcc-c---Hhhhcc
Q 003896 254 LVRLRPAWEDLRSYLIAKGRKRFEVYVCTMAERDYALEMWRLLDPEGHLIGSKQLLDRVVCVKS-GSRK-S---LLNVFQ 328 (788)
Q Consensus 254 ~VKLRPgweeLreFL~ak~sk~FElyVyTmgtR~YA~~IlrLLDPdgklF~~r~l~~RIisres-g~~K-s---L~rLf~ 328 (788)
.++++|++.++.+.|+ +.|.++|.|++.+.++..+++.++=.. +| +.|++..+ +..| + +..++.
T Consensus 95 ~~~~~~g~~~~L~~l~----~~~~~~i~Sn~~~~~~~~~l~~~~l~~-~f------d~i~~~~~~~~~KP~~~~~~~~~~ 163 (224)
T TIGR02254 95 GHQLLPGAFELMENLQ----QKFRLYIVTNGVRETQYKRLRKSGLFP-FF------DDIFVSEDAGIQKPDKEIFNYALE 163 (224)
T ss_pred cCeeCccHHHHHHHHH----hcCcEEEEeCCchHHHHHHHHHCCcHh-hc------CEEEEcCccCCCCCCHHHHHHHHH
Confidence 3678999666666664 339999999999999999988754432 23 46666533 3222 1 222222
Q ss_pred cC-CCCCCeEEEEeCCc--cccccCCCCCeE
Q 003896 329 RG-LCHPKMAMVIDDRC--KVWEDKDQPRVH 356 (788)
Q Consensus 329 ~g-~~d~~~VVIIDDR~--dVW~~~~~NlI~ 356 (788)
.. ++.++.+|.|+|+. |+=..... +++
T Consensus 164 ~~~~~~~~~~v~igD~~~~di~~A~~~-G~~ 193 (224)
T TIGR02254 164 RMPKFSKEEVLMIGDSLTADIKGGQNA-GLD 193 (224)
T ss_pred HhcCCCchheEEECCCcHHHHHHHHHC-CCc
Confidence 21 25688999999984 66555543 444
No 94
>PF00702 Hydrolase: haloacid dehalogenase-like hydrolase; InterPro: IPR005834 This group of hydrolase enzymes is structurally different from the alpha/beta hydrolase family (abhydrolase). This group includes L-2-haloacid dehalogenase, epoxide hydrolases and phosphatases. The structure consists of two domains. One is an inserted four helix bundle, which is the least well conserved region of the alignment, between residues 16 and 96 of HAD1_PSESP. The rest of the fold is composed of the core alpha/beta domain.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1TE2_A 3NAL_A 3NAM_A 3NAN_A 3A1D_B 3J09_A 3J08_A 2B8E_C 3A1E_A 2VOY_J ....
Probab=88.81 E-value=4.9 Score=38.99 Aligned_cols=81 Identities=17% Similarity=0.163 Sum_probs=50.6
Q ss_pred EEEEecCChHHHHHHHHHhccccEEEEEEeCCchHHHHHHHHhhCCCC-CccccccccCceEeecCCCcccHhhhcccCC
Q 003896 253 VLVRLRPAWEDLRSYLIAKGRKRFEVYVCTMAERDYALEMWRLLDPEG-HLIGSKQLLDRVVCVKSGSRKSLLNVFQRGL 331 (788)
Q Consensus 253 y~VKLRPgweeLreFL~ak~sk~FElyVyTmgtR~YA~~IlrLLDPdg-klF~~r~l~~RIisresg~~KsL~rLf~~g~ 331 (788)
..-.+||+..++.+.|+ ..-+.++|.|..++..|..+++.|.-.. .+|. ++. .....|.+.++.....
T Consensus 124 ~~d~~~~~~~~~l~~L~---~~Gi~~~i~TGD~~~~a~~~~~~lgi~~~~v~a------~~~--~kP~~k~~~~~i~~l~ 192 (215)
T PF00702_consen 124 LRDPLRPGAKEALQELK---EAGIKVAILTGDNESTASAIAKQLGIFDSIVFA------RVI--GKPEPKIFLRIIKELQ 192 (215)
T ss_dssp EEEEBHTTHHHHHHHHH---HTTEEEEEEESSEHHHHHHHHHHTTSCSEEEEE------SHE--TTTHHHHHHHHHHHHT
T ss_pred ecCcchhhhhhhhhhhh---ccCcceeeeeccccccccccccccccccccccc------ccc--ccccchhHHHHHHHHh
Confidence 45578999666555554 3458999999999999999999988743 2333 111 1222342233322111
Q ss_pred CCCCeEEEEeCCc
Q 003896 332 CHPKMAMVIDDRC 344 (788)
Q Consensus 332 ~d~~~VVIIDDR~ 344 (788)
..+..|+.|.|..
T Consensus 193 ~~~~~v~~vGDg~ 205 (215)
T PF00702_consen 193 VKPGEVAMVGDGV 205 (215)
T ss_dssp CTGGGEEEEESSG
T ss_pred cCCCEEEEEccCH
Confidence 2456889998864
No 95
>PRK14988 GMP/IMP nucleotidase; Provisional
Probab=88.77 E-value=0.98 Score=46.19 Aligned_cols=81 Identities=15% Similarity=0.036 Sum_probs=53.5
Q ss_pred EEecCChHHHHHHHHHhccccEEEEEEeCCchHHHHHHHHhhCCCCCccccccccCceEeecC-CCccc----Hhhhccc
Q 003896 255 VRLRPAWEDLRSYLIAKGRKRFEVYVCTMAERDYALEMWRLLDPEGHLIGSKQLLDRVVCVKS-GSRKS----LLNVFQR 329 (788)
Q Consensus 255 VKLRPgweeLreFL~ak~sk~FElyVyTmgtR~YA~~IlrLLDPdgklF~~r~l~~RIisres-g~~Ks----L~rLf~~ 329 (788)
+++.||..++.+.|+ .+-|-++|.|++.+.++..+++.++-. .+| +.|+|.++ +..|- ...+...
T Consensus 92 ~~~~~g~~e~L~~Lk---~~g~~~~i~Tn~~~~~~~~~l~~~~l~-~~f------d~iv~s~~~~~~KP~p~~~~~~~~~ 161 (224)
T PRK14988 92 AVLREDTVPFLEALK---ASGKRRILLTNAHPHNLAVKLEHTGLD-AHL------DLLLSTHTFGYPKEDQRLWQAVAEH 161 (224)
T ss_pred CCcCCCHHHHHHHHH---hCCCeEEEEeCcCHHHHHHHHHHCCcH-HHC------CEEEEeeeCCCCCCCHHHHHHHHHH
Confidence 577899777777776 457899999999999999988865422 233 45665532 32232 2222222
Q ss_pred CCCCCCeEEEEeCCcc
Q 003896 330 GLCHPKMAMVIDDRCK 345 (788)
Q Consensus 330 g~~d~~~VVIIDDR~d 345 (788)
-+..++.+|+|||+..
T Consensus 162 ~~~~p~~~l~igDs~~ 177 (224)
T PRK14988 162 TGLKAERTLFIDDSEP 177 (224)
T ss_pred cCCChHHEEEEcCCHH
Confidence 2257889999999964
No 96
>PF12710 HAD: haloacid dehalogenase-like hydrolase; PDB: 3P96_A 3N28_A 3FVV_A 1RKU_A 1RKV_A 1Y8A_A 2FEA_B 3KD3_B.
Probab=87.95 E-value=1.2 Score=42.67 Aligned_cols=33 Identities=6% Similarity=0.023 Sum_probs=26.5
Q ss_pred HHHHHhc-cccEEEEEEeCCchHHHHHHHHhhCCC
Q 003896 266 SYLIAKG-RKRFEVYVCTMAERDYALEMWRLLDPE 299 (788)
Q Consensus 266 eFL~ak~-sk~FElyVyTmgtR~YA~~IlrLLDPd 299 (788)
++|+ .. ...++++|-|.+.+.|+..+++.+.-+
T Consensus 96 e~i~-~~~~~~~~v~IvS~~~~~~i~~~~~~~~i~ 129 (192)
T PF12710_consen 96 ELIR-ELKDNGIKVVIVSGSPDEIIEPIAERLGID 129 (192)
T ss_dssp HHHH-HHHHTTSEEEEEEEEEHHHHHHHHHHTTSS
T ss_pred HHHH-HHHHCCCEEEEECCCcHHHHHHHHHHcCCC
Confidence 5554 22 579999999999999999999976644
No 97
>PRK10826 2-deoxyglucose-6-phosphatase; Provisional
Probab=86.70 E-value=1 Score=45.11 Aligned_cols=93 Identities=10% Similarity=0.101 Sum_probs=62.0
Q ss_pred EEecCChHHHHHHHHHhccccEEEEEEeCCchHHHHHHHHhhCCCCCccccccccCceEeecCC-Cc----ccHhhhccc
Q 003896 255 VRLRPAWEDLRSYLIAKGRKRFEVYVCTMAERDYALEMWRLLDPEGHLIGSKQLLDRVVCVKSG-SR----KSLLNVFQR 329 (788)
Q Consensus 255 VKLRPgweeLreFL~ak~sk~FElyVyTmgtR~YA~~IlrLLDPdgklF~~r~l~~RIisresg-~~----KsL~rLf~~ 329 (788)
+++.|++.++.++|+ .+-|.++|.|++.+.++..+++.+.=++ +| +.++|.+.. .. ..+..++..
T Consensus 91 ~~~~~g~~~~l~~l~---~~g~~~~i~S~~~~~~~~~~l~~~~l~~-~f------~~~~~~~~~~~~Kp~~~~~~~~~~~ 160 (222)
T PRK10826 91 RPLLPGVREALALCK---AQGLKIGLASASPLHMLEAVLTMFDLRD-YF------DALASAEKLPYSKPHPEVYLNCAAK 160 (222)
T ss_pred CCCCCCHHHHHHHHH---HCCCeEEEEeCCcHHHHHHHHHhCcchh-cc------cEEEEcccCCCCCCCHHHHHHHHHH
Confidence 456799777777775 4679999999999999999999865332 23 466666432 11 234444443
Q ss_pred CCCCCCeEEEEeCCccccccCCCCCeEE
Q 003896 330 GLCHPKMAMVIDDRCKVWEDKDQPRVHV 357 (788)
Q Consensus 330 g~~d~~~VVIIDDR~dVW~~~~~NlI~V 357 (788)
-++.++.+++|+|+..=.....+-++..
T Consensus 161 ~~~~~~~~~~igDs~~Di~aA~~aG~~~ 188 (222)
T PRK10826 161 LGVDPLTCVALEDSFNGMIAAKAARMRS 188 (222)
T ss_pred cCCCHHHeEEEcCChhhHHHHHHcCCEE
Confidence 3357788999999987555444445543
No 98
>PLN02779 haloacid dehalogenase-like hydrolase family protein
Probab=86.41 E-value=0.91 Score=48.37 Aligned_cols=96 Identities=16% Similarity=0.154 Sum_probs=59.1
Q ss_pred EEecCChHHHHHHHHHhccccEEEEEEeCCchHHHHHHHHhhCCCCCccccccccCceEeecC-CCcc----cHhhhccc
Q 003896 255 VRLRPAWEDLRSYLIAKGRKRFEVYVCTMAERDYALEMWRLLDPEGHLIGSKQLLDRVVCVKS-GSRK----SLLNVFQR 329 (788)
Q Consensus 255 VKLRPgweeLreFL~ak~sk~FElyVyTmgtR~YA~~IlrLLDPdgklF~~r~l~~RIisres-g~~K----sL~rLf~~ 329 (788)
+++.||+.+++++|+ .+.|.+.|.|++.+.++..+++.+.=. .+|.. ++ +++.++ +..| -+..++..
T Consensus 143 ~~l~pGv~elL~~L~---~~g~~l~IvTn~~~~~~~~~l~~~~~~-~~~~~---~~-~v~~~~~~~~KP~p~~~~~a~~~ 214 (286)
T PLN02779 143 LPLRPGVLRLMDEAL---AAGIKVAVCSTSNEKAVSKIVNTLLGP-ERAQG---LD-VFAGDDVPKKKPDPDIYNLAAET 214 (286)
T ss_pred CCchhhHHHHHHHHH---HCCCeEEEEeCCCHHHHHHHHHHhccc-cccCc---eE-EEeccccCCCCCCHHHHHHHHHH
Confidence 578899777777776 467999999999999999998865211 23331 11 222222 2222 12222222
Q ss_pred CCCCCCeEEEEeCCccccccCCCCCeEEe
Q 003896 330 GLCHPKMAMVIDDRCKVWEDKDQPRVHVV 358 (788)
Q Consensus 330 g~~d~~~VVIIDDR~dVW~~~~~NlI~VV 358 (788)
-+.+++.+|+|+|+..=.....+.++.++
T Consensus 215 ~~~~p~~~l~IGDs~~Di~aA~~aG~~~i 243 (286)
T PLN02779 215 LGVDPSRCVVVEDSVIGLQAAKAAGMRCI 243 (286)
T ss_pred hCcChHHEEEEeCCHHhHHHHHHcCCEEE
Confidence 22467889999999765555555566554
No 99
>smart00559 Ku78 Ku70 and Ku80 are 70kDa and 80kDa subunits of the Lupus Ku autoantigen. This is a single stranded DNA- and ATP-depedent helicase that has a role in chromosome translocation. This is a domain of unknown function C-terminal to its von Willebrand factor A domain, that also occurs in bacterial hypothetical proteins.
Probab=85.53 E-value=1.9 Score=41.74 Aligned_cols=87 Identities=13% Similarity=0.045 Sum_probs=64.7
Q ss_pred CCCCceEEeeecCCCCCCCcchhhhhcccCceeeecCCCCCCCchhHHHHHHHhhcccccEEEEeC---CeeEEEEec-C
Q 003896 32 FPNNEIRIRHISPSSERCIPLSILHTISSFSLRCKLESSAPVEQPHLINLHASCFYEFKTAVVVIG---DEEIHLVAM-P 107 (788)
Q Consensus 32 ~~~~~i~i~~~~~~~e~~~pl~~lh~~~~~~~~~~~~~~~~~~~~~l~~lh~~~~~e~ktaVv~~~---~~elhLva~-~ 107 (788)
+-...|+|.+|-+.+ ..|| .|.+....+....+........++..|+..|.+.+|.||++.- +.+-+|+|+ |
T Consensus 33 ~~~~~l~ilgF~~~~-~i~~---~~~~~~s~~i~P~~~~~~~s~~a~~aL~~am~~~~~~aiar~v~r~~~~p~l~aL~P 108 (140)
T smart00559 33 KSEPGLELLGFKPLS-SLPP---YYFLRPSYFLVPDDKSVIGSTKAFSALVEALLETDKIAIARYTLRTKSNPRLVALRP 108 (140)
T ss_pred cCCCeEEEEeecChH-HCCH---hHccCCcEEEeeCCcccchhHHHHHHHHHHHHhcCCEEEEEEEEcCCCCCEEEEEEe
Confidence 456899999999887 3444 3667655566666655555688999999999999999999982 347899996 4
Q ss_pred CCC-CCCceEeeeecC
Q 003896 108 SKQ-KKFPCFWCYSVS 122 (788)
Q Consensus 108 ~~~-~~~p~F~~~~~~ 122 (788)
... ....|||...+|
T Consensus 109 ~~~~~~~~~l~~~~Lp 124 (140)
T smart00559 109 YDEEDDGEGLVLVQLP 124 (140)
T ss_pred eecccCCCcEEEEecC
Confidence 332 223599988888
No 100
>PF11019 DUF2608: Protein of unknown function (DUF2608); InterPro: IPR022565 This family is conserved in Bacteria. The function is not known.
Probab=85.34 E-value=5.2 Score=42.53 Aligned_cols=73 Identities=22% Similarity=0.161 Sum_probs=39.8
Q ss_pred cccEEEEEEeCCchHHHHHHHHhhCCCCCcccccc--------------ccCceEeecCC------C--cccHhhhcccC
Q 003896 273 RKRFEVYVCTMAERDYALEMWRLLDPEGHLIGSKQ--------------LLDRVVCVKSG------S--RKSLLNVFQRG 330 (788)
Q Consensus 273 sk~FElyVyTmgtR~YA~~IlrLLDPdgklF~~r~--------------l~~RIisresg------~--~KsL~rLf~~g 330 (788)
.+..-++.+|.....|...-++.|---|--|...- ...+-.+..+| . -..|..+|..-
T Consensus 95 ~~~~~v~alT~~~~~~~~~t~~~Lk~~gi~fs~~~~~~~~~~~~~~~~~~~~~~~~~~~GIlft~~~~KG~~L~~fL~~~ 174 (252)
T PF11019_consen 95 NKGIPVIALTARGPNMEDWTLRELKSLGIDFSSSSFPEDGIISFPVFDSALSRAPSFYDGILFTGGQDKGEVLKYFLDKI 174 (252)
T ss_pred HCCCcEEEEcCCChhhHHHHHHHHHHCCCCccccccccCcceecccccCCCCCCceeecCeEEeCCCccHHHHHHHHHHc
Confidence 35577888888887777666664322222222111 11222222222 1 23466566543
Q ss_pred CCCCCeEEEEeCCcc
Q 003896 331 LCHPKMAMVIDDRCK 345 (788)
Q Consensus 331 ~~d~~~VVIIDDR~d 345 (788)
+-.++.+|+|||+.+
T Consensus 175 ~~~pk~IIfIDD~~~ 189 (252)
T PF11019_consen 175 NQSPKKIIFIDDNKE 189 (252)
T ss_pred CCCCCeEEEEeCCHH
Confidence 457899999999865
No 101
>PF06941 NT5C: 5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C); InterPro: IPR010708 This family consists of several 5' nucleotidase, deoxy (Pyrimidine), and cytosolic type C (NT5C) proteins. 5'(3')-deoxyribonucleotidase is a ubiquitous enzyme in mammalian cells whose physiological function is not known [].; GO: 0016791 phosphatase activity; PDB: 1Z4M_A 1Q92_A 1Q91_A 1Z4J_A 1Z4I_A 1Z4Q_A 1Z4K_A 2JAW_A 1MH9_A 1Z4L_A ....
Probab=85.21 E-value=1.8 Score=43.15 Aligned_cols=17 Identities=35% Similarity=0.440 Sum_probs=12.5
Q ss_pred cceEEEEeCCcceeecc
Q 003896 136 RCLAIVFDLDETLIVAN 152 (788)
Q Consensus 136 r~L~lV~DLDeTLi~A~ 152 (788)
|+|-|.+|+||||....
T Consensus 1 ~~i~I~iDiDgVLad~~ 17 (191)
T PF06941_consen 1 RKIRIAIDIDGVLADFN 17 (191)
T ss_dssp --EEEEEESBTTTB-HH
T ss_pred CCcEEEEECCCCCcccH
Confidence 67889999999998764
No 102
>PRK09449 dUMP phosphatase; Provisional
Probab=84.91 E-value=1.7 Score=43.36 Aligned_cols=90 Identities=10% Similarity=0.062 Sum_probs=56.2
Q ss_pred EEecCChHHHHHHHHHhccccEEEEEEeCCchHHHHHHHHhhCCCCCccccccccCceEeecC-CCccc----Hhhhccc
Q 003896 255 VRLRPAWEDLRSYLIAKGRKRFEVYVCTMAERDYALEMWRLLDPEGHLIGSKQLLDRVVCVKS-GSRKS----LLNVFQR 329 (788)
Q Consensus 255 VKLRPgweeLreFL~ak~sk~FElyVyTmgtR~YA~~IlrLLDPdgklF~~r~l~~RIisres-g~~Ks----L~rLf~~ 329 (788)
+++.|++.++.+.|+ +.|-+.|.|++.+.++..+++.++-.+ +| +.|++.++ +..|- +..++..
T Consensus 94 ~~~~~g~~~~L~~L~----~~~~~~i~Tn~~~~~~~~~l~~~~l~~-~f------d~v~~~~~~~~~KP~p~~~~~~~~~ 162 (224)
T PRK09449 94 CTPLPGAVELLNALR----GKVKMGIITNGFTELQQVRLERTGLRD-YF------DLLVISEQVGVAKPDVAIFDYALEQ 162 (224)
T ss_pred CccCccHHHHHHHHH----hCCeEEEEeCCcHHHHHHHHHhCChHH-Hc------CEEEEECccCCCCCCHHHHHHHHHH
Confidence 567899666666663 459999999999999999888765432 33 46666543 32221 2222222
Q ss_pred CCC-CCCeEEEEeCCc--cccccCCCCCeE
Q 003896 330 GLC-HPKMAMVIDDRC--KVWEDKDQPRVH 356 (788)
Q Consensus 330 g~~-d~~~VVIIDDR~--dVW~~~~~NlI~ 356 (788)
-++ .++.+++|+|+. |+=..+.. ++.
T Consensus 163 ~~~~~~~~~~~vgD~~~~Di~~A~~a-G~~ 191 (224)
T PRK09449 163 MGNPDRSRVLMVGDNLHSDILGGINA-GID 191 (224)
T ss_pred cCCCCcccEEEEcCCcHHHHHHHHHC-CCc
Confidence 112 346899999984 66655544 443
No 103
>TIGR01670 YrbI-phosphatas 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family. The Methanosarcina sequence is distinctive in that it is linked to an N-terminal cytidylyltransferase domain (pfam02348) and is annotated as acylneuraminate cytidylyltransferase. This may give some clue as the function of these phosphatases. Several eukaryotic sequences scoring between trusted and noise are also closely related to this function such as the CMP-N-acetylneuraminic acid synthetase from mouse, but in these cases the phosphatase domain is clearly inactive as many of the active site residues are not conserved.
Probab=84.79 E-value=3.6 Score=39.86 Aligned_cols=74 Identities=14% Similarity=0.147 Sum_probs=46.9
Q ss_pred EecCChHHHHHHHHHhccccEEEEEEeCCchHHHHHHHHhhCCCCCccccccccCceEeecCCCcccHhhhcccCCCCCC
Q 003896 256 RLRPAWEDLRSYLIAKGRKRFEVYVCTMAERDYALEMWRLLDPEGHLIGSKQLLDRVVCVKSGSRKSLLNVFQRGLCHPK 335 (788)
Q Consensus 256 KLRPgweeLreFL~ak~sk~FElyVyTmgtR~YA~~IlrLLDPdgklF~~r~l~~RIisresg~~KsL~rLf~~g~~d~~ 335 (788)
.++|+. +.+.|+ .+.+.+.|.|+..+..+..+++.+.-+ .+|.. .+ ....-+..+...-+.+++
T Consensus 30 ~~~~~~--~i~~Lk---~~G~~i~IvTn~~~~~~~~~l~~~gi~-~~~~~---------~~-~k~~~~~~~~~~~~~~~~ 93 (154)
T TIGR01670 30 NVRDGY--GIRCAL---KSGIEVAIITGRKAKLVEDRCKTLGIT-HLYQG---------QS-NKLIAFSDILEKLALAPE 93 (154)
T ss_pred echhHH--HHHHHH---HCCCEEEEEECCCCHHHHHHHHHcCCC-EEEec---------cc-chHHHHHHHHHHcCCCHH
Confidence 555653 677886 578999999999999999999887654 33331 11 111223333322124667
Q ss_pred eEEEEeCCcc
Q 003896 336 MAMVIDDRCK 345 (788)
Q Consensus 336 ~VVIIDDR~d 345 (788)
.++.|.|+..
T Consensus 94 ~~~~vGDs~~ 103 (154)
T TIGR01670 94 NVAYIGDDLI 103 (154)
T ss_pred HEEEECCCHH
Confidence 8888888753
No 104
>TIGR01691 enolase-ppase 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. This enzyme is the enolase-phosphatase of methionine salvage, a pathway that regenerates methionine from methylthioadenosine (MTA). Adenosylmethionine (AdoMet) is a donor of different moieties for various processes, including methylation reactions. Use of AdoMet for spermidine biosynthesis, which leads to polyamine biosynthesis, leaves MTA as a by-product that must be cleared. In Bacillus subtilis and related species, this single protein is replaced by separate enzymes with enolase and phosphatase activities.
Probab=84.52 E-value=1.9 Score=44.86 Aligned_cols=86 Identities=12% Similarity=0.109 Sum_probs=51.1
Q ss_pred EEEecCChHHHHHHHHHhccccEEEEEEeCCchHHHHHHHHhhCCC--CCccccccccCceEeecCCCcccHhhhcccCC
Q 003896 254 LVRLRPAWEDLRSYLIAKGRKRFEVYVCTMAERDYALEMWRLLDPE--GHLIGSKQLLDRVVCVKSGSRKSLLNVFQRGL 331 (788)
Q Consensus 254 ~VKLRPgweeLreFL~ak~sk~FElyVyTmgtR~YA~~IlrLLDPd--gklF~~r~l~~RIisresg~~KsL~rLf~~g~ 331 (788)
-.++.|++.++++.|+ ++-|.++|||++++.+...+++.++-. ..+|.. +++.+++.+. ....+..++..-+
T Consensus 93 ~~~lypgv~e~L~~Lk---~~G~~l~I~Sn~s~~~~~~~~~~~~~~~L~~~f~~--~fd~~~g~KP-~p~~y~~i~~~lg 166 (220)
T TIGR01691 93 TSHLYPDVPPALEAWL---QLGLRLAVYSSGSVPAQKLLFGHSDAGNLTPYFSG--YFDTTVGLKT-EAQSYVKIAGQLG 166 (220)
T ss_pred ccCcCcCHHHHHHHHH---HCCCEEEEEeCCCHHHHHHHHhhccccchhhhcce--EEEeCcccCC-CHHHHHHHHHHhC
Confidence 3467799666666664 467999999999999999888765311 123431 1222223221 1112333333222
Q ss_pred CCCCeEEEEeCCcc
Q 003896 332 CHPKMAMVIDDRCK 345 (788)
Q Consensus 332 ~d~~~VVIIDDR~d 345 (788)
+.++.+++|+|+..
T Consensus 167 v~p~e~lfVgDs~~ 180 (220)
T TIGR01691 167 SPPREILFLSDIIN 180 (220)
T ss_pred cChhHEEEEeCCHH
Confidence 57889999999864
No 105
>PF08282 Hydrolase_3: haloacid dehalogenase-like hydrolase; InterPro: IPR013200 The Haloacid Dehydrogenase (HAD) superfamily includes phosphatases, phosphonatases, P-type ATPases, beta-phosphoglucomutases, phosphomannomutases, and dehalogenases, which are involved in a variety of cellular processes ranging from amino acid biosynthesis to detoxification []. This HAD domain is found in several distinct enzymes including: Phospholipid-transporting ATPase 1 (3.6.3.1 from EC), a putative lipid-flipping enzyme involved in cold tolerance in Arabidopsis [] 3-deoxy-D-manno-octulosonate (KDO) 8-phosphate phosphatase (3.1.3.45 from EC), which catalyses the final step in the biosynthesis of KDO - a component of lipopolysaccharide in Gram-negative bacteria [] Mannosyl-3-phosphoglycerate phosphatase (3.1.3.70 from EC), which hydrolyzes mannosyl-3-phosphoglycerate to form the osmolyte mannosylglycerate [] Phosphoglycolate phopshatase (3.1.3.18 from EC), which catalyses the dephosphorylation of 2-phosphoglycolate [] ; PDB: 2B30_B 3R4C_A 1XVI_B 3IJ5_B 3MMZ_C 3L7Y_A 1XPJ_C 1RLT_B 1RLM_B 2HF2_A ....
Probab=84.05 E-value=0.9 Score=44.49 Aligned_cols=31 Identities=32% Similarity=0.382 Sum_probs=24.7
Q ss_pred EEEeCCcceeecccccchHHHHHHHHHHhhcC
Q 003896 140 IVFDLDETLIVANTMKSFEDRIEALRSWIARE 171 (788)
Q Consensus 140 lV~DLDeTLi~A~t~~~~e~ri~~l~~w~~~~ 171 (788)
|++||||||+..... --+.-+++|++|....
T Consensus 1 i~~DlDGTLl~~~~~-i~~~~~~al~~l~~~g 31 (254)
T PF08282_consen 1 IFSDLDGTLLNSDGK-ISPETIEALKELQEKG 31 (254)
T ss_dssp EEEECCTTTCSTTSS-SCHHHHHHHHHHHHTT
T ss_pred cEEEECCceecCCCe-eCHHHHHHHHhhcccc
Confidence 689999999997765 3467788899888655
No 106
>PRK03669 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=83.78 E-value=0.99 Score=47.11 Aligned_cols=34 Identities=26% Similarity=0.242 Sum_probs=23.9
Q ss_pred ceEEEEeCCcceeecccccchHHHHHHHHHHhhcC
Q 003896 137 CLAIVFDLDETLIVANTMKSFEDRIEALRSWIARE 171 (788)
Q Consensus 137 ~L~lV~DLDeTLi~A~t~~~~e~ri~~l~~w~~~~ 171 (788)
...|++||||||+.... ..-+..+++++++....
T Consensus 7 ~~lI~~DlDGTLL~~~~-~i~~~~~~ai~~l~~~G 40 (271)
T PRK03669 7 PLLIFTDLDGTLLDSHT-YDWQPAAPWLTRLREAQ 40 (271)
T ss_pred CeEEEEeCccCCcCCCC-cCcHHHHHHHHHHHHcC
Confidence 46788999999998643 22366777887766544
No 107
>PF05152 DUF705: Protein of unknown function (DUF705); InterPro: IPR007827 This family contains uncharacterised baculoviral proteins.
Probab=83.54 E-value=1.7 Score=47.62 Aligned_cols=45 Identities=11% Similarity=0.129 Sum_probs=34.8
Q ss_pred HHHHHHHhccccE-EEEEEeCCchHHHHHHHHhhCCCCCccccccccCceEeec
Q 003896 264 LRSYLIAKGRKRF-EVYVCTMAERDYALEMWRLLDPEGHLIGSKQLLDRVVCVK 316 (788)
Q Consensus 264 LreFL~ak~sk~F-ElyVyTmgtR~YA~~IlrLLDPdgklF~~r~l~~RIisre 316 (788)
+.+.|. ++.+.+ -|++|.-|+++|+..-++.++-. .+|. =|+|..
T Consensus 147 v~~sL~-~Lk~~g~vLvLWSyG~~eHV~~sl~~~~L~-~~Fd------~ii~~G 192 (297)
T PF05152_consen 147 VYDSLR-ELKEQGCVLVLWSYGNREHVRHSLKELKLE-GYFD------IIICGG 192 (297)
T ss_pred HHHHHH-HHHHcCCEEEEecCCCHHHHHHHHHHhCCc-cccE------EEEeCC
Confidence 666776 666666 99999999999999999998766 4454 566653
No 108
>PF14954 LIX1: Limb expression 1
Probab=83.04 E-value=1.8 Score=45.85 Aligned_cols=61 Identities=28% Similarity=0.303 Sum_probs=45.3
Q ss_pred CCChHHHHHHHHHhC---------CCCceEEEEeeeCCCceEEEEEEECCeEeEEEec-----CCHHHHHHHHHHHHHHH
Q 003896 624 SYLSIGVLQEIGKRC---------SSKVEFRSVVSTSKDLQFSVEVLFTGEKIGVGMG-----KTRKDAQQQAAENALHY 689 (788)
Q Consensus 624 s~dyKS~LQE~~QK~---------~~~peYelveesGH~~~FtveV~I~Gkk~G~G~G-----sSKKEAEQ~AAK~AL~~ 689 (788)
..|-...|||+=|.. +..+.|+.+-. ..+.|.+-|.+-| |..+| .||-||.+.|||.||-+
T Consensus 20 ~vnvV~~LqeFWq~Kq~r~a~~~~~~lv~YEs~ps--~~ppyVcyVTLPG---GSCFGnfq~C~tkAEARR~AAKiALmN 94 (252)
T PF14954_consen 20 DVNVVEALQEFWQMKQSRGADLKSEALVVYESVPS--PSPPYVCYVTLPG---GSCFGNFQNCPTKAEARRSAAKIALMN 94 (252)
T ss_pred cchHHHHHHHHHHHHHhccccCCCCCeeeeeccCC--CCCCeEEEEeCCC---CCccCccccCCcHHHHHhhhHHHHHHH
Confidence 357899999976543 33466776533 5688999999976 44455 59999999999999953
No 109
>cd00594 KU Ku-core domain; includes the central DNA-binding beta-barrels, polypeptide rings, and the C-terminal arm of Ku proteins. The Ku protein consists of two tightly associated homologous subunits, Ku70 and Ku80, and was originally identified as an autoantigen recognized by the sera of patients with an autoimmunity disease. In eukaryotes, the Ku heterodimer contributes to genomic integrity through its ability to bind DNA double-strand breaks and facilitate repair by non-homologous end-joining. The bacterial Ku homologs does not contain the conserved N-terminal extension that is present in the eukaryotic Ku protein.
Probab=82.32 E-value=4.2 Score=42.65 Aligned_cols=90 Identities=13% Similarity=0.066 Sum_probs=68.8
Q ss_pred CCCCceEEeeecCCCCCCCcchhhhhcccCceeeecCCCCCCCchhHHHHHHHhhcccccEEEEeC---CeeEEEEe-cC
Q 003896 32 FPNNEIRIRHISPSSERCIPLSILHTISSFSLRCKLESSAPVEQPHLINLHASCFYEFKTAVVVIG---DEEIHLVA-MP 107 (788)
Q Consensus 32 ~~~~~i~i~~~~~~~e~~~pl~~lh~~~~~~~~~~~~~~~~~~~~~l~~lh~~~~~e~ktaVv~~~---~~elhLva-~~ 107 (788)
.-..+|+|.+|-+.+ ..++ .|.+....+....++ ......++..|+..|.+.+|.||++.- +...+||| +|
T Consensus 86 ~~~~~l~ilgF~~~~-~i~~---~~~~~~s~~l~P~~~-~~~s~~af~aL~~am~~~~kvai~r~v~r~~~~p~l~aL~P 160 (272)
T cd00594 86 ETSKGLDILGFVPAS-EIPP---YYFDKESYYLVPDDS-DKGSEKAFSALRRALLEKDKVAIARYVLRRNSRPRLVALRP 160 (272)
T ss_pred CCCCeEEEEeEechH-hCCc---ceecCCcEEEEcCCC-CcccHHHHHHHHHHHHHcCcEEEEEEEEcCCCCcEEEEEec
Confidence 456899999999887 3343 366665556555555 556689999999999999999999883 45889998 56
Q ss_pred CCCCCCceEeeeecCcchhHh
Q 003896 108 SKQKKFPCFWCYSVSSGLYNS 128 (788)
Q Consensus 108 ~~~~~~p~F~~~~~~~g~y~~ 128 (788)
......+|||...+| ..|.
T Consensus 161 ~~~~~~~gl~l~~LP--fadD 179 (272)
T cd00594 161 QEEEDPEGLVLVTLP--FADD 179 (272)
T ss_pred cccCCCCEEEEEccC--Cchh
Confidence 665667899999998 5553
No 110
>TIGR01261 hisB_Nterm histidinol-phosphatase. This model describes histidinol phosphatase. All known examples in the scope of this model are bifunctional proteins with a histidinol phosphatase domain followed by an imidazoleglycerol-phosphate dehydratase domain. These enzymatic domains catalyze the ninth and seventh steps, respectively, of histidine biosynthesis.
Probab=82.02 E-value=3.4 Score=40.82 Aligned_cols=80 Identities=19% Similarity=0.245 Sum_probs=49.8
Q ss_pred EEEecCChHHHHHHHHHhccccEEEEEEeCC---------------chHHHHHHHHhhCCCCCccccccccCceEe----
Q 003896 254 LVRLRPAWEDLRSYLIAKGRKRFEVYVCTMA---------------ERDYALEMWRLLDPEGHLIGSKQLLDRVVC---- 314 (788)
Q Consensus 254 ~VKLRPgweeLreFL~ak~sk~FElyVyTmg---------------tR~YA~~IlrLLDPdgklF~~r~l~~RIis---- 314 (788)
.+++-|++.++++.|+ .+.|.++|.||. .+.|+..+++.++-. |. +-++|
T Consensus 27 ~~~~~pgv~e~L~~L~---~~g~~l~IvSN~~g~~~~~~~~~~~~~~~~~~~~~l~~~gl~---fd-----~ii~~~~~~ 95 (161)
T TIGR01261 27 KLRFEKGVIPALLKLK---KAGYKFVMVTNQDGLGTPSFPQADFDGPHNLMLQIFRSQGII---FD-----DVLICPHFP 95 (161)
T ss_pred HeeECCCHHHHHHHHH---HCCCeEEEEeCCccccCCcCCHHHHHHHHHHHHHHHHHCCCc---ee-----EEEECCCCC
Confidence 3466699777777775 467999999996 366777777776664 43 22333
Q ss_pred ecC-CCcc----cHhhhcccCCCCCCeEEEEeCCc
Q 003896 315 VKS-GSRK----SLLNVFQRGLCHPKMAMVIDDRC 344 (788)
Q Consensus 315 res-g~~K----sL~rLf~~g~~d~~~VVIIDDR~ 344 (788)
.++ +..| -+..++...+++++.+++|+|+.
T Consensus 96 ~~~~~~~KP~~~~~~~~~~~~~~~~~e~l~IGD~~ 130 (161)
T TIGR01261 96 DDNCDCRKPKIKLLEPYLKKNLIDKARSYVIGDRE 130 (161)
T ss_pred CCCCCCCCCCHHHHHHHHHHcCCCHHHeEEEeCCH
Confidence 111 1122 23333333335788999999984
No 111
>PRK09484 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase; Provisional
Probab=81.31 E-value=4.3 Score=40.42 Aligned_cols=67 Identities=15% Similarity=0.120 Sum_probs=40.1
Q ss_pred HHHHHHHhccccEEEEEEeCCchHHHHHHHHhhCCCCCccccccccCceEeecCCCcccHhhhcccCCCCCCeEEEEeCC
Q 003896 264 LRSYLIAKGRKRFEVYVCTMAERDYALEMWRLLDPEGHLIGSKQLLDRVVCVKSGSRKSLLNVFQRGLCHPKMAMVIDDR 343 (788)
Q Consensus 264 LreFL~ak~sk~FElyVyTmgtR~YA~~IlrLLDPdgklF~~r~l~~RIisresg~~KsL~rLf~~g~~d~~~VVIIDDR 343 (788)
..+.|+ .+.+.+.|.|+....++..+++.|.-+ .+|.. .+ .....|..++..-+..++.++.|.|.
T Consensus 56 ~i~~L~---~~Gi~v~I~T~~~~~~v~~~l~~lgl~-~~f~g---------~~-~k~~~l~~~~~~~gl~~~ev~~VGDs 121 (183)
T PRK09484 56 GIRCLL---TSGIEVAIITGRKSKLVEDRMTTLGIT-HLYQG---------QS-NKLIAFSDLLEKLAIAPEQVAYIGDD 121 (183)
T ss_pred HHHHHH---HCCCEEEEEeCCCcHHHHHHHHHcCCc-eeecC---------CC-cHHHHHHHHHHHhCCCHHHEEEECCC
Confidence 445665 367899999999999999998887644 23321 01 11122333333222456778888776
Q ss_pred c
Q 003896 344 C 344 (788)
Q Consensus 344 ~ 344 (788)
.
T Consensus 122 ~ 122 (183)
T PRK09484 122 L 122 (183)
T ss_pred H
Confidence 4
No 112
>TIGR01485 SPP_plant-cyano sucrose-6F-phosphate phosphohydrolase. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.
Probab=81.29 E-value=1 Score=46.42 Aligned_cols=14 Identities=50% Similarity=0.596 Sum_probs=12.5
Q ss_pred ceEEEEeCCcceee
Q 003896 137 CLAIVFDLDETLIV 150 (788)
Q Consensus 137 ~L~lV~DLDeTLi~ 150 (788)
++.|+.||||||+.
T Consensus 1 ~~li~tDlDGTLl~ 14 (249)
T TIGR01485 1 RLLLVSDLDNTLVD 14 (249)
T ss_pred CeEEEEcCCCcCcC
Confidence 47899999999996
No 113
>TIGR01482 SPP-subfamily Sucrose-phosphate phosphatase subfamily. catalyze the same reaction as SPP.
Probab=79.15 E-value=2.3 Score=42.30 Aligned_cols=30 Identities=33% Similarity=0.407 Sum_probs=20.3
Q ss_pred EEEeCCcceeecccccch-HHHHHHHHHHhhcC
Q 003896 140 IVFDLDETLIVANTMKSF-EDRIEALRSWIARE 171 (788)
Q Consensus 140 lV~DLDeTLi~A~t~~~~-e~ri~~l~~w~~~~ 171 (788)
|++||||||+... +.+ +...++|++|....
T Consensus 1 i~~DlDGTLl~~~--~~i~~~~~~al~~l~~~G 31 (225)
T TIGR01482 1 IASDIDGTLTDPN--RAINESALEAIRKAESVG 31 (225)
T ss_pred CeEeccCccCCCC--cccCHHHHHHHHHHHHCC
Confidence 5899999999754 223 33466777766544
No 114
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=79.07 E-value=8.1 Score=48.22 Aligned_cols=66 Identities=21% Similarity=0.164 Sum_probs=54.6
Q ss_pred ChHHHHHHHHHhCCCCceEEEEeeeC-CCceEEEEEEECCeEe-EEEecCCHHHHHHHHHHHHHHHHH
Q 003896 626 LSIGVLQEIGKRCSSKVEFRSVVSTS-KDLQFSVEVLFTGEKI-GVGMGKTRKDAQQQAAENALHYLA 691 (788)
Q Consensus 626 dyKS~LQE~~QK~~~~peYelveesG-H~~~FtveV~I~Gkk~-G~G~GsSKKEAEQ~AAK~AL~~L~ 691 (788)
|.|..|-.||-|++..|+|.+-.+.+ ....|.++|.+.+..+ +.|-...||.|+..||+.-.+.|-
T Consensus 2 d~k~fly~~~~k~~~~p~~d~~~~~~~~rqrf~ce~~~~~~~~~~~~~stnkKda~knac~dfv~ylv 69 (1282)
T KOG0921|consen 2 DVKEFLYAWLGKNKYGPTYDIRSEGRKGRQRFLCEVRVEGFGYTAVGNSTNKKDAATNAAQDFCQYLV 69 (1282)
T ss_pred cHHHHHHHHHhhhccCcceehhhhcccchhheeeeeeccCCcceeeecccccchhhHHHHHHHHHHhh
Confidence 67899999999998889999965545 7778999999988754 345556699999999999998885
No 115
>TIGR01662 HAD-SF-IIIA HAD-superfamily hydrolase, subfamily IIIA. In the case of histidinol phosphatase and PNK-3'-phosphatase, this model represents a domain of a bifunctional system. In the histidinol phosphatase HisB, a C-terminal domain is an imidazoleglycerol-phosphate dehydratase which catalyzes a related step in histidine biosynthesis. In PNK-3'-phosphatase, N- and C-terminal domains constitute the polynucleotide kinase and DNA-binding components of the enzyme.
Probab=79.00 E-value=5 Score=37.02 Aligned_cols=87 Identities=15% Similarity=0.131 Sum_probs=52.4
Q ss_pred EEecCChHHHHHHHHHhccccEEEEEEeCCc--------hHHHHHHHHhhCCCCCccccccccCceEeecCC--CcccHh
Q 003896 255 VRLRPAWEDLRSYLIAKGRKRFEVYVCTMAE--------RDYALEMWRLLDPEGHLIGSKQLLDRVVCVKSG--SRKSLL 324 (788)
Q Consensus 255 VKLRPgweeLreFL~ak~sk~FElyVyTmgt--------R~YA~~IlrLLDPdgklF~~r~l~~RIisresg--~~KsL~ 324 (788)
.++.|++.++.++|+ .+.|.++|.|++. +.++.++++.++-. ++. -++|-... ...-+.
T Consensus 24 ~~~~~~v~~~l~~L~---~~g~~l~i~Sn~~~~~~~~~~~~~~~~~l~~~~l~--~~~------~~~~~~~~KP~~~~~~ 92 (132)
T TIGR01662 24 RILYPEVPDALAELK---EAGYKVVIVTNQSGIGRGKFSSGRVARRLEELGVP--IDV------LYACPHCRKPKPGMFL 92 (132)
T ss_pred heeCCCHHHHHHHHH---HCCCEEEEEECCccccccHHHHHHHHHHHHHCCCC--EEE------EEECCCCCCCChHHHH
Confidence 356699777777775 4679999999999 88888888876543 111 11111000 111122
Q ss_pred hhcccC-CCCCCeEEEEeCC--ccccccCCC
Q 003896 325 NVFQRG-LCHPKMAMVIDDR--CKVWEDKDQ 352 (788)
Q Consensus 325 rLf~~g-~~d~~~VVIIDDR--~dVW~~~~~ 352 (788)
.+...- ..+++.+|.|+|+ .|+......
T Consensus 93 ~~~~~~~~~~~~~~v~IGD~~~~Di~~A~~~ 123 (132)
T TIGR01662 93 EALKRFNEIDPEESVYVGDQDLTDLQAAKRA 123 (132)
T ss_pred HHHHHcCCCChhheEEEcCCCcccHHHHHHC
Confidence 333222 2478899999994 566665543
No 116
>PRK10530 pyridoxal phosphate (PLP) phosphatase; Provisional
Probab=78.70 E-value=3.2 Score=42.51 Aligned_cols=32 Identities=28% Similarity=0.378 Sum_probs=22.9
Q ss_pred EEEEeCCcceeecccccchHHHHHHHHHHhhcC
Q 003896 139 AIVFDLDETLIVANTMKSFEDRIEALRSWIARE 171 (788)
Q Consensus 139 ~lV~DLDeTLi~A~t~~~~e~ri~~l~~w~~~~ 171 (788)
.|++||||||+.... .--+..++++++|....
T Consensus 5 li~~DlDGTLl~~~~-~i~~~~~~ai~~~~~~G 36 (272)
T PRK10530 5 VIALDLDGTLLTPKK-TILPESLEALARAREAG 36 (272)
T ss_pred EEEEeCCCceECCCC-ccCHHHHHHHHHHHHCC
Confidence 678999999997543 22345678888877655
No 117
>PRK15126 thiamin pyrimidine pyrophosphate hydrolase; Provisional
Probab=77.74 E-value=3 Score=43.26 Aligned_cols=32 Identities=25% Similarity=0.396 Sum_probs=22.5
Q ss_pred EEEEeCCcceeecccccchHHHHHHHHHHhhcC
Q 003896 139 AIVFDLDETLIVANTMKSFEDRIEALRSWIARE 171 (788)
Q Consensus 139 ~lV~DLDeTLi~A~t~~~~e~ri~~l~~w~~~~ 171 (788)
.+++||||||+.... .--+..++++++|....
T Consensus 4 li~~DlDGTLl~~~~-~i~~~~~~ai~~l~~~G 35 (272)
T PRK15126 4 LAAFDMDGTLLMPDH-HLGEKTLSTLARLRERD 35 (272)
T ss_pred EEEEeCCCcCcCCCC-cCCHHHHHHHHHHHHCC
Confidence 578999999997543 22345677888876554
No 118
>TIGR00099 Cof-subfamily Cof subfamily of IIB subfamily of haloacid dehalogenase superfamily. The members of this subfamily are restricted almost exclusively to bacteria (one sequences from S. pombe scores above trusted, while another is between trusted and noise). It is notable that no archaea are found in this group, the closest relations to the archaea found here being two Deinococcus sequences.
Probab=77.19 E-value=3.1 Score=42.70 Aligned_cols=31 Identities=29% Similarity=0.302 Sum_probs=22.4
Q ss_pred EEEeCCcceeecccccchHHHHHHHHHHhhcC
Q 003896 140 IVFDLDETLIVANTMKSFEDRIEALRSWIARE 171 (788)
Q Consensus 140 lV~DLDeTLi~A~t~~~~e~ri~~l~~w~~~~ 171 (788)
+++||||||+.... .--+..++++++|....
T Consensus 2 i~~DlDGTLl~~~~-~i~~~~~~~i~~l~~~G 32 (256)
T TIGR00099 2 IFIDLDGTLLNDDH-TISPSTKEALAKLREKG 32 (256)
T ss_pred EEEeCCCCCCCCCC-ccCHHHHHHHHHHHHCC
Confidence 78999999998642 12255677888877665
No 119
>TIGR02009 PGMB-YQAB-SF beta-phosphoglucomutase family hydrolase. All of these are members of the larger Haloacid dehalogenase (HAD) subfamily IA and include the "variant 3" glu-asp version of the third conserved HAD domain (TIGR01509).
Probab=76.23 E-value=3.4 Score=39.61 Aligned_cols=78 Identities=17% Similarity=0.149 Sum_probs=47.2
Q ss_pred EEecCChHHHHHHHHHhccccEEEEEEeCCchHHHHHHHHhhCCCCCccccccccCceEeecC-CCcc----cHhhhccc
Q 003896 255 VRLRPAWEDLRSYLIAKGRKRFEVYVCTMAERDYALEMWRLLDPEGHLIGSKQLLDRVVCVKS-GSRK----SLLNVFQR 329 (788)
Q Consensus 255 VKLRPgweeLreFL~ak~sk~FElyVyTmgtR~YA~~IlrLLDPdgklF~~r~l~~RIisres-g~~K----sL~rLf~~ 329 (788)
+++.||+.++.++|+ ...|.+.|.|++ .++..+++.++=+ .+|. .+++.++ +..| -+..+...
T Consensus 87 ~~~~~g~~~~l~~l~---~~g~~i~i~S~~--~~~~~~l~~~~l~-~~f~------~v~~~~~~~~~kp~~~~~~~~~~~ 154 (185)
T TIGR02009 87 AEVLPGIENFLKRLK---KKGIAVGLGSSS--KNADRILAKLGLT-DYFD------AIVDADEVKEGKPHPETFLLAAEL 154 (185)
T ss_pred CCCCcCHHHHHHHHH---HcCCeEEEEeCc--hhHHHHHHHcChH-HHCC------EeeehhhCCCCCCChHHHHHHHHH
Confidence 577899666666665 356899999988 7788887765432 2343 4444432 1112 12223322
Q ss_pred CCCCCCeEEEEeCCc
Q 003896 330 GLCHPKMAMVIDDRC 344 (788)
Q Consensus 330 g~~d~~~VVIIDDR~ 344 (788)
-.+.++.+|+|+|+.
T Consensus 155 ~~~~~~~~v~IgD~~ 169 (185)
T TIGR02009 155 LGVSPNECVVFEDAL 169 (185)
T ss_pred cCCCHHHeEEEeCcH
Confidence 224678899999985
No 120
>COG0561 Cof Predicted hydrolases of the HAD superfamily [General function prediction only]
Probab=76.19 E-value=4.5 Score=41.74 Aligned_cols=32 Identities=31% Similarity=0.317 Sum_probs=22.2
Q ss_pred ceEEEEeCCcceeecccccchHHHHHHHHHHhh
Q 003896 137 CLAIVFDLDETLIVANTMKSFEDRIEALRSWIA 169 (788)
Q Consensus 137 ~L~lV~DLDeTLi~A~t~~~~e~ri~~l~~w~~ 169 (788)
.-.|++||||||+..... .-+.-+++|+....
T Consensus 3 ~kli~~DlDGTLl~~~~~-i~~~~~~al~~~~~ 34 (264)
T COG0561 3 IKLLAFDLDGTLLDSNKT-ISPETKEALARLRE 34 (264)
T ss_pred eeEEEEcCCCCccCCCCc-cCHHHHHHHHHHHH
Confidence 357899999999999875 33445566654333
No 121
>PF02735 Ku: Ku70/Ku80 beta-barrel domain; InterPro: IPR006164 The Ku heterodimer is composed of Ku70 and Ku80 (or Ku86), 70 kDa and 80 kDa subunits of an ATP-dependent DNA helicase, which contributes to genomic integrity through its ability to bind DNA double-stranded breaks and facilitate repair by the non-homologous end-joining pathway. This is the central DNA-binding beta-barrel domain and is found in both the Ku70 and Ku80 proteins. Ku makes only a few contacts with the sugar-phosphate backbone, and none with the DNA bases, but it fits sterically to major and minor groove contours forming a ring that encircles duplex DNA, cradling two full turns of the DNA molecule. By forming a bridge between the broken DNA ends, Ku acts to structurally support and align the DNA ends, to protect them from degradation, and to prevent promiscuous binding to unbroken DNA. Ku effectively aligns the DNA, while still allowing access of polymerases, nucleases and ligases to the broken DNA ends to promote end joining [].; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0006303 double-strand break repair via nonhomologous end joining; PDB: 1JEY_B 1JEQ_B.
Probab=75.87 E-value=3 Score=42.03 Aligned_cols=87 Identities=14% Similarity=0.041 Sum_probs=58.8
Q ss_pred CCCCceEEeeecCCCCCCCcchhhhhcccCceeeecCCCCCCCchhHHHHHHHhhcccccEEEEeC---CeeEEEEecCC
Q 003896 32 FPNNEIRIRHISPSSERCIPLSILHTISSFSLRCKLESSAPVEQPHLINLHASCFYEFKTAVVVIG---DEEIHLVAMPS 108 (788)
Q Consensus 32 ~~~~~i~i~~~~~~~e~~~pl~~lh~~~~~~~~~~~~~~~~~~~~~l~~lh~~~~~e~ktaVv~~~---~~elhLva~~~ 108 (788)
+...+|+|.+|-+.+ ..++ .|.+....+-...+.+......++..|+..|.+.+|.||++.- +.+-+|+|+-+
T Consensus 80 ~~~~~l~ilGF~~~~-~i~~---~~~~~~~~~i~p~~~~~~~s~~~f~aL~~am~~~~~vaI~r~v~r~~~~p~l~aL~P 155 (200)
T PF02735_consen 80 ETSPGLEILGFVPRS-NIPP---YYFMGESYFIVPDEKSGEGSAKAFSALVQAMLEKNKVAIARYVLRSNSRPRLVALIP 155 (200)
T ss_dssp -S-SEEEEEEEEEGG-GS-C---CG-ECEEEEEEEETTTECCHHHHHHHHHHHHHHCTEEEEEEEESSTTS--EEEEEEE
T ss_pred cCCCeEEEEEEEcch-hCCc---eEEeCCcEEEEECCCCcchhHHHHHHHHHHHHhcCcEEEEEEEEcCCCCcEEEEEEE
Confidence 455899999999877 3443 4566666665555666556688999999999999999999983 45888998543
Q ss_pred CC-C--CCceEeeeecC
Q 003896 109 KQ-K--KFPCFWCYSVS 122 (788)
Q Consensus 109 ~~-~--~~p~F~~~~~~ 122 (788)
.. . ..+||+...+|
T Consensus 156 ~~~~~~~~~gl~~~~Lp 172 (200)
T PF02735_consen 156 QIEESDTPEGLVLIRLP 172 (200)
T ss_dssp EE-CEEC-CEEEEEE--
T ss_pred eccccCCCCeEEEEEcC
Confidence 33 2 23788888888
No 122
>PRK10725 fructose-1-P/6-phosphogluconate phosphatase; Provisional
Probab=75.83 E-value=1.7 Score=42.06 Aligned_cols=88 Identities=18% Similarity=0.097 Sum_probs=53.5
Q ss_pred ecCChHHHHHHHHHhccccEEEEEEeCCchHHHHHHHHhhCCCCCccccccccCceEeecCC-Cccc----HhhhcccCC
Q 003896 257 LRPAWEDLRSYLIAKGRKRFEVYVCTMAERDYALEMWRLLDPEGHLIGSKQLLDRVVCVKSG-SRKS----LLNVFQRGL 331 (788)
Q Consensus 257 LRPgweeLreFL~ak~sk~FElyVyTmgtR~YA~~IlrLLDPdgklF~~r~l~~RIisresg-~~Ks----L~rLf~~g~ 331 (788)
+-|+. ++.+.|+ +.+.+.|.|++.+.++..+++.+.=. .+| +.|+|.++. ..|. +..++..-+
T Consensus 89 ~~~~~-e~L~~L~----~~~~l~I~T~~~~~~~~~~l~~~~l~-~~f------d~i~~~~~~~~~KP~p~~~~~~~~~~~ 156 (188)
T PRK10725 89 PLPLI-EVVKAWH----GRRPMAVGTGSESAIAEALLAHLGLR-RYF------DAVVAADDVQHHKPAPDTFLRCAQLMG 156 (188)
T ss_pred CccHH-HHHHHHH----hCCCEEEEcCCchHHHHHHHHhCCcH-hHc------eEEEehhhccCCCCChHHHHHHHHHcC
Confidence 34652 3444453 44899999999999999999986533 234 467777542 2232 333333223
Q ss_pred CCCCeEEEEeCCccccccCCCCCeE
Q 003896 332 CHPKMAMVIDDRCKVWEDKDQPRVH 356 (788)
Q Consensus 332 ~d~~~VVIIDDR~dVW~~~~~NlI~ 356 (788)
+.++.+|+|||+..=.....+.++.
T Consensus 157 ~~~~~~l~igDs~~di~aA~~aG~~ 181 (188)
T PRK10725 157 VQPTQCVVFEDADFGIQAARAAGMD 181 (188)
T ss_pred CCHHHeEEEeccHhhHHHHHHCCCE
Confidence 5678899999985433333333444
No 123
>KOG3120 consensus Predicted haloacid dehalogenase-like hydrolase [General function prediction only]
Probab=75.64 E-value=6 Score=42.43 Aligned_cols=38 Identities=18% Similarity=0.107 Sum_probs=32.5
Q ss_pred CChHHHHHHHHHhccccEEEEEEeCCchHHHHHHHHhhCC
Q 003896 259 PAWEDLRSYLIAKGRKRFEVYVCTMAERDYALEMWRLLDP 298 (788)
Q Consensus 259 PgweeLreFL~ak~sk~FElyVyTmgtR~YA~~IlrLLDP 298 (788)
||.-++..|+. +.-. ||+.|-.-++.-+-+++++..+-
T Consensus 87 Pgmv~lik~~a-k~g~-~eliIVSDaNsfFIe~~Lea~~~ 124 (256)
T KOG3120|consen 87 PGMVRLIKSAA-KLGC-FELIIVSDANSFFIEEILEAAGI 124 (256)
T ss_pred ccHHHHHHHHH-hCCC-ceEEEEecCchhHHHHHHHHccH
Confidence 89888999997 4444 99999999999999999987654
No 124
>cd00788 KU70 Ku-core domain, Ku70 subfamily; Ku70 is a subunit of the Ku protein, which plays a key role in multiple nuclear processes such as DNA repair, chromosome maintenance, transcription regulation, and V(D)J recombination. The mechanism underlying the regulation of all the diverse functions of Ku is still unclear, although it seems that Ku is a multifunctional protein that works in the nuclei. In mammalian cells, the Ku heterodimer recruits the catalytic subunit of DNA-dependent protein kinase (DNA-PK), which is dependent on its association with the Ku70/80 heterodimer bound to DNA for its protein kinase activity.
Probab=75.34 E-value=8.4 Score=41.37 Aligned_cols=91 Identities=21% Similarity=0.239 Sum_probs=65.4
Q ss_pred CCCCceEEeeecCCCCCCCcchhhhhcccCceeeecCCCCCCCchhHHHHHHHhhcccccEEEEe---CCeeEEEEec-C
Q 003896 32 FPNNEIRIRHISPSSERCIPLSILHTISSFSLRCKLESSAPVEQPHLINLHASCFYEFKTAVVVI---GDEEIHLVAM-P 107 (788)
Q Consensus 32 ~~~~~i~i~~~~~~~e~~~pl~~lh~~~~~~~~~~~~~~~~~~~~~l~~lh~~~~~e~ktaVv~~---~~~elhLva~-~ 107 (788)
.-..+|+|.+|-+.+ .-+ -.|.+....+-...+........++..|+..|.+.+|.||++. .+....|||+ |
T Consensus 92 ~~~~~l~ilgF~~~~-~i~---~~~~~~~s~fl~P~~~~~~gs~~af~aL~~am~~~~kvaIa~~v~r~~~~p~l~aL~P 167 (287)
T cd00788 92 FGEPGLRLIGFKPRS-TLK---PYHNIKKSYFIYPDESDYKGSTRLFAALLRSCLKKNKVAICWYILRKNSPPRLVALVP 167 (287)
T ss_pred cCCCceEEEeeccHH-HCC---hhhccCCceeEecCcccccCcHHHHHHHHHHHHhcCcEEEEEEEecCCCCCEEEEEec
Confidence 446899999999877 222 2466665555555555545567899999999999999999988 3346799985 5
Q ss_pred CCCC--------CCceEeeeecCcchhHh
Q 003896 108 SKQK--------KFPCFWCYSVSSGLYNS 128 (788)
Q Consensus 108 ~~~~--------~~p~F~~~~~~~g~y~~ 128 (788)
.... ..+|||...+| ..|.
T Consensus 168 ~~~~~~~~~~~~~~~gl~l~~LP--fadD 194 (287)
T cd00788 168 QEEELDEPDGQVLPPGFHLVPLP--FADD 194 (287)
T ss_pred cccccCCCCCccCCCcEEEEecC--chhh
Confidence 3322 15799999998 5554
No 125
>TIGR01656 Histidinol-ppas histidinol-phosphate phosphatase family domain. This domain is a member of the haloacid-dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. This superfamily is distinguished by the presence of three motifs: an N-terminal motif containing the nucleophilic aspartate, a central motif containing an conserved serine or threonine, and a C-terminal motif containing a conserved lysine (or arginine) and conserved aspartates. More specifically, the domian modelled here is a member of subfamily III of the HAD-superfamily by virtue of lacking a "capping" domain in either of the two common positions, between motifs 1 and 2, or between motifs 2 and 3.
Probab=74.90 E-value=7.5 Score=37.12 Aligned_cols=40 Identities=28% Similarity=0.233 Sum_probs=30.3
Q ss_pred EecCChHHHHHHHHHhccccEEEEEEeCCch---------------HHHHHHHHhhCC
Q 003896 256 RLRPAWEDLRSYLIAKGRKRFEVYVCTMAER---------------DYALEMWRLLDP 298 (788)
Q Consensus 256 KLRPgweeLreFL~ak~sk~FElyVyTmgtR---------------~YA~~IlrLLDP 298 (788)
++.|++.++.++|+ .+-|.+.|.|++.+ .++..+++.++-
T Consensus 27 ~~~~g~~~~l~~Lk---~~g~~~~I~Sn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l 81 (147)
T TIGR01656 27 QLRPGAVPALLTLR---AAGYTVVVVTNQSGIGRGYFSAEAFRAPNGRVLELLRQLGV 81 (147)
T ss_pred EEcCChHHHHHHHH---HCCCEEEEEeCCCcccCCcCCHHHHHHHHHHHHHHHHhCCC
Confidence 56799777777776 68899999999885 566666766554
No 126
>PF03767 Acid_phosphat_B: HAD superfamily, subfamily IIIB (Acid phosphatase); InterPro: IPR005519 This family of class B acid phosphatases also contains a number of vegetative storage proteins (VPS25). The acid phosphatase activity of VPS has been experimentally demonstrated [].; GO: 0003993 acid phosphatase activity; PDB: 3PCT_C 2I34_A 2I33_A 1Z5U_D 1Z5G_A 2AUT_C 1Z88_B 3OCV_A 3OCZ_A 3OCX_A ....
Probab=74.66 E-value=2.4 Score=44.21 Aligned_cols=17 Identities=47% Similarity=0.725 Sum_probs=14.9
Q ss_pred ccceEEEEeCCcceeecc
Q 003896 135 LRCLAIVFDLDETLIVAN 152 (788)
Q Consensus 135 ~r~L~lV~DLDeTLi~A~ 152 (788)
.++.++|||+||||+ .|
T Consensus 70 ~~~~avv~DIDeTvL-sn 86 (229)
T PF03767_consen 70 DKPPAVVFDIDETVL-SN 86 (229)
T ss_dssp TSEEEEEEESBTTTE-EH
T ss_pred CCCcEEEEECCcccc-cC
Confidence 578999999999999 44
No 127
>PRK10513 sugar phosphate phosphatase; Provisional
Probab=73.32 E-value=5.3 Score=41.16 Aligned_cols=31 Identities=23% Similarity=0.344 Sum_probs=22.0
Q ss_pred EEEEeCCcceeecccccch-HHHHHHHHHHhhcC
Q 003896 139 AIVFDLDETLIVANTMKSF-EDRIEALRSWIARE 171 (788)
Q Consensus 139 ~lV~DLDeTLi~A~t~~~~-e~ri~~l~~w~~~~ 171 (788)
.|++||||||+.... .+ +..+++++++....
T Consensus 5 li~~DlDGTLl~~~~--~i~~~~~~ai~~l~~~G 36 (270)
T PRK10513 5 LIAIDMDGTLLLPDH--TISPAVKQAIAAARAKG 36 (270)
T ss_pred EEEEecCCcCcCCCC--ccCHHHHHHHHHHHHCC
Confidence 678999999997642 23 55677887766554
No 128
>TIGR01490 HAD-SF-IB-hyp1 HAD-superfamily subfamily IB hydrolase, TIGR01490. A subset of these sequences, including the Caulobacter crescentus CicA protein, cluster together and may represent a separate equivalog.
Probab=73.32 E-value=3.3 Score=40.56 Aligned_cols=47 Identities=17% Similarity=0.196 Sum_probs=36.4
Q ss_pred EEecCChHHHHHHHHHhccccEEEEEEeCCchHHHHHHHHhhCCCCCcccc
Q 003896 255 VRLRPAWEDLRSYLIAKGRKRFEVYVCTMAERDYALEMWRLLDPEGHLIGS 305 (788)
Q Consensus 255 VKLRPgweeLreFL~ak~sk~FElyVyTmgtR~YA~~IlrLLDPdgklF~~ 305 (788)
.+++|++.++.+.|+ ++-+.++|.|++.+.|+..+++.+.-+. +|+.
T Consensus 86 ~~~~~~~~~~l~~l~---~~g~~v~ivS~s~~~~v~~~~~~lg~~~-~~~~ 132 (202)
T TIGR01490 86 SILYPEARDLIRWHK---AEGHTIVLVSASLTILVKPLARILGIDN-AIGT 132 (202)
T ss_pred HhccHHHHHHHHHHH---HCCCEEEEEeCCcHHHHHHHHHHcCCcc-eEec
Confidence 357899666666665 4678999999999999999999877653 5664
No 129
>TIGR01484 HAD-SF-IIB HAD-superfamily hydrolase, subfamily IIB. The IIB subfamily consists of Trehalose-6-phosphatase (TIGR00685), plant and cyanobacterial Sucrose-phosphatase and a closely related group of bacterial and archaeal sequences, eukaryotic phosphomannomutase (pfam03332), a large subfamily ("Cof-like hydrolases", TIGR00099) containing many closely related bacterial sequences, a hypothetical equivalog containing the E. coli YedP protein, as well as two small clusters containing sequences whose relationship to the other groups is unclear.
Probab=72.98 E-value=5.6 Score=39.23 Aligned_cols=31 Identities=35% Similarity=0.443 Sum_probs=17.8
Q ss_pred EEEeCCcceeecccccchHHHHHHHHHHhhc
Q 003896 140 IVFDLDETLIVANTMKSFEDRIEALRSWIAR 170 (788)
Q Consensus 140 lV~DLDeTLi~A~t~~~~e~ri~~l~~w~~~ 170 (788)
|++||||||+...+.+--+..+++|.+....
T Consensus 2 i~~D~DgTL~~~~~~~~~~~~~~~l~~l~~~ 32 (204)
T TIGR01484 2 LFFDLDGTLLDPNAHELSPETIEALERLREA 32 (204)
T ss_pred EEEeCcCCCcCCCCCcCCHHHHHHHHHHHHC
Confidence 7899999999754211113344445444433
No 130
>PTZ00174 phosphomannomutase; Provisional
Probab=72.91 E-value=6.6 Score=40.76 Aligned_cols=33 Identities=18% Similarity=0.319 Sum_probs=22.6
Q ss_pred ceEEEEeCCcceeecccccch-HHHHHHHHHHhhcC
Q 003896 137 CLAIVFDLDETLIVANTMKSF-EDRIEALRSWIARE 171 (788)
Q Consensus 137 ~L~lV~DLDeTLi~A~t~~~~-e~ri~~l~~w~~~~ 171 (788)
.-.|++||||||+.... .+ +..+++++.+....
T Consensus 5 ~klia~DlDGTLL~~~~--~is~~~~~ai~~l~~~G 38 (247)
T PTZ00174 5 KTILLFDVDGTLTKPRN--PITQEMKDTLAKLKSKG 38 (247)
T ss_pred CeEEEEECcCCCcCCCC--CCCHHHHHHHHHHHHCC
Confidence 45689999999997653 23 33567777766544
No 131
>TIGR02461 osmo_MPG_phos mannosyl-3-phosphoglycerate phosphatase. Members of this family are mannosyl-3-phosphoglycerate phosphatase (EC 3.1.3.70). It acts sequentially after mannosyl-3-phosphoglycerate synthase (EC 2.4.1.217) in a two-step pathway of biosynthesis of the compatible solute mannosylglycerate, a typical osmolyte of thermophiles.
Probab=72.31 E-value=3.2 Score=42.80 Aligned_cols=30 Identities=30% Similarity=0.193 Sum_probs=22.2
Q ss_pred EEEeCCcceeecccccchHHHHHHHHHHhhcC
Q 003896 140 IVFDLDETLIVANTMKSFEDRIEALRSWIARE 171 (788)
Q Consensus 140 lV~DLDeTLi~A~t~~~~e~ri~~l~~w~~~~ 171 (788)
+++||||||++... ..+..+++++++....
T Consensus 2 i~~DlDGTLl~~~~--~~~~~~~ai~~l~~~G 31 (225)
T TIGR02461 2 IFTDLDGTLLPPGY--EPGPAREALEELKDLG 31 (225)
T ss_pred EEEeCCCCCcCCCC--CchHHHHHHHHHHHCC
Confidence 78999999999543 3556778887766553
No 132
>PRK10725 fructose-1-P/6-phosphogluconate phosphatase; Provisional
Probab=71.88 E-value=1.9 Score=41.68 Aligned_cols=14 Identities=29% Similarity=0.750 Sum_probs=12.5
Q ss_pred EEEEeCCcceeecc
Q 003896 139 AIVFDLDETLIVAN 152 (788)
Q Consensus 139 ~lV~DLDeTLi~A~ 152 (788)
+++||+|||||.+.
T Consensus 7 ~viFD~DGTLiDs~ 20 (188)
T PRK10725 7 GLIFDMDGTILDTE 20 (188)
T ss_pred EEEEcCCCcCccCH
Confidence 58999999999975
No 133
>PRK01158 phosphoglycolate phosphatase; Provisional
Probab=71.28 E-value=4 Score=40.87 Aligned_cols=32 Identities=25% Similarity=0.208 Sum_probs=21.9
Q ss_pred EEEEeCCcceeecccccchHHHHHHHHHHhhcC
Q 003896 139 AIVFDLDETLIVANTMKSFEDRIEALRSWIARE 171 (788)
Q Consensus 139 ~lV~DLDeTLi~A~t~~~~e~ri~~l~~w~~~~ 171 (788)
.|++||||||+..... --+..+++|+++....
T Consensus 5 li~~DlDGTLl~~~~~-i~~~~~~al~~l~~~G 36 (230)
T PRK01158 5 AIAIDIDGTITDKDRR-LSLKAVEAIRKAEKLG 36 (230)
T ss_pred EEEEecCCCcCCCCCc-cCHHHHHHHHHHHHCC
Confidence 6789999999965431 1255677887776444
No 134
>PRK12702 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=71.27 E-value=5.7 Score=43.90 Aligned_cols=66 Identities=17% Similarity=0.197 Sum_probs=38.4
Q ss_pred EEEEeCCcceeecccccchHHHHHHHHHHhhcCCchhh--hhchhHHHHHhhchHHHHHhhhccceeeeCCeEEE
Q 003896 139 AIVFDLDETLIVANTMKSFEDRIEALRSWIAREPDQIR--ASGMSAELKRYMDDRTLLKQYTENDCVMDNGKVFK 211 (788)
Q Consensus 139 ~lV~DLDeTLi~A~t~~~~e~ri~~l~~w~~~~~dP~~--~~~~~~E~kr~~~D~~lL~q~~~~d~V~~nG~~~~ 211 (788)
.|++||||||+...+. ..++.+++|.+..... -|.- ..-...|++.+.+... .+.-.++.||-.+-
T Consensus 3 LIftDLDGTLLd~~~~-~~~~a~~aL~~Lk~~G-I~vVlaTGRt~~ev~~l~~~Lg-----l~~p~I~eNGA~I~ 70 (302)
T PRK12702 3 LVLSSLDGSLLDLEFN-SYGAARQALAALERRS-IPLVLYSLRTRAQLEHLCRQLR-----LEHPFICEDGSAIY 70 (302)
T ss_pred EEEEeCCCCCcCCCCc-CCHHHHHHHHHHHHCC-CEEEEEcCCCHHHHHHHHHHhC-----CCCeEEEeCCcEEE
Confidence 5788999999987653 4677777776655443 2211 0113456666553222 11236888986653
No 135
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=71.22 E-value=12 Score=44.23 Aligned_cols=75 Identities=12% Similarity=0.088 Sum_probs=42.3
Q ss_pred cCChHHHHHHHHHhccccEEEEEEeCCch------------HHHHHHHHhhCCCCCccccccccCceEeecCC-Cccc--
Q 003896 258 RPAWEDLRSYLIAKGRKRFEVYVCTMAER------------DYALEMWRLLDPEGHLIGSKQLLDRVVCVKSG-SRKS-- 322 (788)
Q Consensus 258 RPgweeLreFL~ak~sk~FElyVyTmgtR------------~YA~~IlrLLDPdgklF~~r~l~~RIisresg-~~Ks-- 322 (788)
-|++.+++..|. ..-|.|.|+||-.. .++..|++.|+-. |. -++|-+.+ ..|-
T Consensus 199 ~pgV~e~L~~L~---~~Gy~IvIvTNQ~gI~~G~~~~~~~~~ki~~iL~~lgip---fd------viia~~~~~~RKP~p 266 (526)
T TIGR01663 199 FPEIPEKLKELE---ADGFKICIFTNQGGIARGKINADDFKAKIEAIVAKLGVP---FQ------VFIAIGAGFYRKPLT 266 (526)
T ss_pred ccCHHHHHHHHH---HCCCEEEEEECCcccccCcccHHHHHHHHHHHHHHcCCc---eE------EEEeCCCCCCCCCCH
Confidence 388555555554 57799999999666 4577777766532 22 33343322 1231
Q ss_pred --Hhhh---cc-cCCCCCCeEEEEeCCc
Q 003896 323 --LLNV---FQ-RGLCHPKMAMVIDDRC 344 (788)
Q Consensus 323 --L~rL---f~-~g~~d~~~VVIIDDR~ 344 (788)
+..+ +. +...+++.+++|.|+.
T Consensus 267 Gm~~~a~~~~~~~~~Id~~~S~~VGDaa 294 (526)
T TIGR01663 267 GMWDHLKEEANDGTEIQEDDCFFVGDAA 294 (526)
T ss_pred HHHHHHHHhcCcccCCCHHHeEEeCCcc
Confidence 1111 21 1124678888998874
No 136
>TIGR00578 ku70 ATP-dependent DNA helicase ii, 70 kDa subunit (ku70). Proteins in this family are involved in non-homologous end joining, a process used for the repair of double stranded DNA breaks. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). Cutoff does not detect the putative ku70 homologs in yeast.
Probab=70.68 E-value=10 Score=45.00 Aligned_cols=87 Identities=15% Similarity=0.098 Sum_probs=62.5
Q ss_pred CCCCceEEeeecCCCCCCCcchhhhhcccCceeeecCCCCCCCchhHHHHHHHhhcccccEEEEeC---CeeEEEEecCC
Q 003896 32 FPNNEIRIRHISPSSERCIPLSILHTISSFSLRCKLESSAPVEQPHLINLHASCFYEFKTAVVVIG---DEEIHLVAMPS 108 (788)
Q Consensus 32 ~~~~~i~i~~~~~~~e~~~pl~~lh~~~~~~~~~~~~~~~~~~~~~l~~lh~~~~~e~ktaVv~~~---~~elhLva~~~ 108 (788)
+....|+|-+|-+.+. .+ ..|.+.+..+-.+.+....-...++..||..|.+-+|.||++.- ..-=+|||+-+
T Consensus 316 ~~~~~l~ilGF~~~s~-l~---~~~~~~~s~fi~Pde~~~~gs~~afsaL~~~l~~~~kvAI~~~v~r~~~~P~lvaL~P 391 (584)
T TIGR00578 316 FDPPGLQLMGFKPLSM-LK---KHHHLRPSLFVYPEESLVRGSTTLFSALLQKCLEKEVAALCRYISRRNQPPYFVALVP 391 (584)
T ss_pred cCCCceEEEeeccHHH-CC---chhhcCCceEEecCCcccccHHHHHHHHHHHHHhcCcEEEEEEEecCCCCCEEEEEeC
Confidence 5668999999998873 33 34666544455544544444577899999999999999999993 34568888543
Q ss_pred CC---------CCCceEeeeecC
Q 003896 109 KQ---------KKFPCFWCYSVS 122 (788)
Q Consensus 109 ~~---------~~~p~F~~~~~~ 122 (788)
.. ...++||...+|
T Consensus 392 ~~~~~d~~~~q~~p~G~~l~~LP 414 (584)
T TIGR00578 392 QEEELDDQKIQVTPPGFHLVFLP 414 (584)
T ss_pred CcccccccCCccCCCeEEEEecC
Confidence 32 234799999998
No 137
>KOG2334 consensus tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=70.48 E-value=1.5 Score=50.32 Aligned_cols=65 Identities=23% Similarity=0.188 Sum_probs=56.8
Q ss_pred CChHHHHHHHHHhC-CCCceEEEEeeeCCCceEEEEEEECCeEeEEEec-CCHHHHHHHHHHHHHHHHH
Q 003896 625 YLSIGVLQEIGKRC-SSKVEFRSVVSTSKDLQFSVEVLFTGEKIGVGMG-KTRKDAQQQAAENALHYLA 691 (788)
Q Consensus 625 ~dyKS~LQE~~QK~-~~~peYelveesGH~~~FtveV~I~Gkk~G~G~G-sSKKEAEQ~AAK~AL~~L~ 691 (788)
.++|..|-.||-+. ...|.|+++.. .++.|.+.+.+.|++|-.+.+ .++|-|+|.||..+|.+..
T Consensus 375 ~~~k~~l~~~~~~~~~~~~~ye~~~~--~d~lf~si~~~~~~~~~ssi~~~n~k~aeq~aa~~~l~~s~ 441 (477)
T KOG2334|consen 375 DTPKMVLADLCVKTKANGPVYETVQR--TDKLFSSIATARGQKYNSSIWSPNKKSAEQDAAIVALRKSN 441 (477)
T ss_pred CCHHHHHHHhhhhhcCCCcchhhhhh--hhhhhHHHhhhhhhhhhccccCcchhhHHHHHHHHHHHhcC
Confidence 57899999999999 56799999754 467899999999999998887 7999999999999998764
No 138
>TIGR01675 plant-AP plant acid phosphatase. This model explicitly excludes the VSPs which lack the nucleophilc aspartate. The possibility exists, however, that some members of this family may, while containing all of the conserved HAD-superfamily catalytic residues, lack activity and have a function related to the function of the VSPs rather than the acid phosphatases.
Probab=70.12 E-value=2.8 Score=44.41 Aligned_cols=93 Identities=11% Similarity=0.013 Sum_probs=46.8
Q ss_pred HHHHHHHhccccEEEEEEeCCchHHHHHHHHhhCCCCCccccccccCceEeec-CCCc------cc--HhhhcccCCCCC
Q 003896 264 LRSYLIAKGRKRFEVYVCTMAERDYALEMWRLLDPEGHLIGSKQLLDRVVCVK-SGSR------KS--LLNVFQRGLCHP 334 (788)
Q Consensus 264 LreFL~ak~sk~FElyVyTmgtR~YA~~IlrLLDPdgklF~~r~l~~RIisre-sg~~------Ks--L~rLf~~g~~d~ 334 (788)
..+|++.-.++-++|++.|.=.........+-|.-.| |.. . ++++-|. +... |+ ...+-.. .-
T Consensus 125 al~l~~~l~~~G~~Vf~lTGR~e~~r~~T~~nL~~~G--~~~--~-~~LiLR~~~d~~~~~~~yKs~~R~~l~~~---GY 196 (229)
T TIGR01675 125 GLKLYQKIIELGIKIFLLSGRWEELRNATLDNLINAG--FTG--W-KHLILRGLEDSNKTVVTYKSEVRKSLMEE---GY 196 (229)
T ss_pred HHHHHHHHHHCCCEEEEEcCCChHHHHHHHHHHHHcC--CCC--c-CeeeecCCCCCCchHhHHHHHHHHHHHhC---Cc
Confidence 4555541126788999999988777555555443333 220 0 3444443 1122 32 1122222 25
Q ss_pred CeEEEEeCCccccccCCC-CCeEEecCcCCC
Q 003896 335 KMAMVIDDRCKVWEDKDQ-PRVHVVPAFTPY 364 (788)
Q Consensus 335 ~~VVIIDDR~dVW~~~~~-NlI~VVp~Y~py 364 (788)
..+..|||...=...... ....-.|=.|||
T Consensus 197 rIv~~iGDq~sDl~G~~~~~RtFKLPNPmYy 227 (229)
T TIGR01675 197 RIWGNIGDQWSDLLGSPPGRRTFKLPNPMYY 227 (229)
T ss_pred eEEEEECCChHHhcCCCccCceeeCCCCccc
Confidence 788889998543332222 144444555544
No 139
>TIGR01689 EcbF-BcbF capsule biosynthesis phosphatase. Due to the likelihood that the substrates of these enzymes are different depending on the nature of the particular polysaccharides associated with each species, this model has been classified as a subfamily despite the close homology.
Probab=69.75 E-value=4.9 Score=38.90 Aligned_cols=13 Identities=38% Similarity=0.733 Sum_probs=11.4
Q ss_pred EEEEeCCcceeec
Q 003896 139 AIVFDLDETLIVA 151 (788)
Q Consensus 139 ~lV~DLDeTLi~A 151 (788)
.++|||||||+..
T Consensus 3 ~i~~DiDGTL~~~ 15 (126)
T TIGR01689 3 RLVMDLDNTITLT 15 (126)
T ss_pred EEEEeCCCCcccC
Confidence 6899999999865
No 140
>PRK10976 putative hydrolase; Provisional
Probab=67.30 E-value=5.1 Score=41.28 Aligned_cols=32 Identities=28% Similarity=0.279 Sum_probs=22.8
Q ss_pred EEEEeCCcceeecccccchHHHHHHHHHHhhcC
Q 003896 139 AIVFDLDETLIVANTMKSFEDRIEALRSWIARE 171 (788)
Q Consensus 139 ~lV~DLDeTLi~A~t~~~~e~ri~~l~~w~~~~ 171 (788)
.+++||||||+.... .--+..++++++|....
T Consensus 4 li~~DlDGTLl~~~~-~is~~~~~ai~~l~~~G 35 (266)
T PRK10976 4 VVASDLDGTLLSPDH-TLSPYAKETLKLLTARG 35 (266)
T ss_pred EEEEeCCCCCcCCCC-cCCHHHHHHHHHHHHCC
Confidence 578999999997643 12245678888877555
No 141
>TIGR01493 HAD-SF-IA-v2 Haloacid dehalogenase superfamily, subfamily IA, variant 2 with 3rd motif like haloacid dehalogenase. The Subfamily IA and IB capping domains are predicted by PSI-PRED to consist of an alpha helical bundle. Subfamily I encompasses such a wide region of sequence space (the sequences are highly divergent) that modelling it with a single alignment is impossible, resulting in an overly broad description which allows in many unrelated sequences. Subfamily IA and IB are separated based on an aparrent phylogenetic bifurcation. Subfamily IA is still too broad to model, but cannot be further subdivided into large chunks based on phylogenetic trees. Of the three motifs defining the HAD superfamily, the third has three variant forms : (1) hhhhsDxxx(x)D, (2) hhhhssxxx(x)D and (3) hhhhDDxxx(x)s where _s_ refers to a small amino acid and _h_ to a hydrophobic one. All three of these variants are found in subfamily IA. Individual models were made based on seeds exhibiting only o
Probab=65.61 E-value=2.7 Score=40.28 Aligned_cols=73 Identities=15% Similarity=0.067 Sum_probs=48.0
Q ss_pred EEecCChHHHHHHHHHhccccEEEEEEeCCchHHHHHHHHhhCCCCCccccccccCceEeecC-CCcc-c---Hhhhccc
Q 003896 255 VRLRPAWEDLRSYLIAKGRKRFEVYVCTMAERDYALEMWRLLDPEGHLIGSKQLLDRVVCVKS-GSRK-S---LLNVFQR 329 (788)
Q Consensus 255 VKLRPgweeLreFL~ak~sk~FElyVyTmgtR~YA~~IlrLLDPdgklF~~r~l~~RIisres-g~~K-s---L~rLf~~ 329 (788)
+++.|+ +.++|+ .+.|.||+.+.+...+++.+.- ..+| +.|+|.+. +..| + ...++..
T Consensus 89 ~~~~~g---~~~~L~-------~~~i~Tn~~~~~~~~~l~~~~l-~~~f------d~v~~~~~~~~~KP~p~~f~~~~~~ 151 (175)
T TIGR01493 89 LPPWPD---SAAALA-------RVAILSNASHWAFDQFAQQAGL-PWYF------DRAFSVDTVRAYKPDPVVYELVFDT 151 (175)
T ss_pred CCCCCc---hHHHHH-------HHhhhhCCCHHHHHHHHHHCCC-HHHH------hhhccHhhcCCCCCCHHHHHHHHHH
Confidence 457789 888886 2889999999999999987642 2334 35666644 3333 1 1222222
Q ss_pred CCCCCCeEEEEeCCc
Q 003896 330 GLCHPKMAMVIDDRC 344 (788)
Q Consensus 330 g~~d~~~VVIIDDR~ 344 (788)
-++.++.+++|+|+.
T Consensus 152 ~~~~p~~~l~vgD~~ 166 (175)
T TIGR01493 152 VGLPPDRVLMVAAHQ 166 (175)
T ss_pred HCCCHHHeEeEecCh
Confidence 225789999999983
No 142
>PLN02811 hydrolase
Probab=65.25 E-value=8.1 Score=39.00 Aligned_cols=92 Identities=20% Similarity=0.124 Sum_probs=53.3
Q ss_pred EEecCChHHHHHHHHHhccccEEEEEEeCCchHHHHHH-HHhhCCCCCccccccccCceEeec--C-CC--------ccc
Q 003896 255 VRLRPAWEDLRSYLIAKGRKRFEVYVCTMAERDYALEM-WRLLDPEGHLIGSKQLLDRVVCVK--S-GS--------RKS 322 (788)
Q Consensus 255 VKLRPgweeLreFL~ak~sk~FElyVyTmgtR~YA~~I-lrLLDPdgklF~~r~l~~RIisre--s-g~--------~Ks 322 (788)
+++.||+.++.++|+ ..-|.++|-|++.+.+.... .+.. .++. +++.++|.+ + +. .+-
T Consensus 77 ~~l~~gv~e~l~~L~---~~g~~~~i~S~~~~~~~~~~~~~~~----~l~~---~f~~i~~~~~~~~~~~KP~p~~~~~a 146 (220)
T PLN02811 77 SDLMPGAERLVRHLH---AKGIPIAIATGSHKRHFDLKTQRHG----ELFS---LMHHVVTGDDPEVKQGKPAPDIFLAA 146 (220)
T ss_pred CCCCccHHHHHHHHH---HCCCcEEEEeCCchhhHHHHHcccH----HHHh---hCCEEEECChhhccCCCCCcHHHHHH
Confidence 467799777777776 45799999999998766432 2211 1111 334666665 2 11 223
Q ss_pred HhhhcccCCCCCCeEEEEeCCccccccCCCCCeEE
Q 003896 323 LLNVFQRGLCHPKMAMVIDDRCKVWEDKDQPRVHV 357 (788)
Q Consensus 323 L~rLf~~g~~d~~~VVIIDDR~dVW~~~~~NlI~V 357 (788)
++++. .+++.++.+|+|+|+..--....+.++.+
T Consensus 147 ~~~~~-~~~~~~~~~v~IgDs~~di~aA~~aG~~~ 180 (220)
T PLN02811 147 ARRFE-DGPVDPGKVLVFEDAPSGVEAAKNAGMSV 180 (220)
T ss_pred HHHhC-CCCCCccceEEEeccHhhHHHHHHCCCeE
Confidence 44432 11256889999999964333333334543
No 143
>TIGR01493 HAD-SF-IA-v2 Haloacid dehalogenase superfamily, subfamily IA, variant 2 with 3rd motif like haloacid dehalogenase. The Subfamily IA and IB capping domains are predicted by PSI-PRED to consist of an alpha helical bundle. Subfamily I encompasses such a wide region of sequence space (the sequences are highly divergent) that modelling it with a single alignment is impossible, resulting in an overly broad description which allows in many unrelated sequences. Subfamily IA and IB are separated based on an aparrent phylogenetic bifurcation. Subfamily IA is still too broad to model, but cannot be further subdivided into large chunks based on phylogenetic trees. Of the three motifs defining the HAD superfamily, the third has three variant forms : (1) hhhhsDxxx(x)D, (2) hhhhssxxx(x)D and (3) hhhhDDxxx(x)s where _s_ refers to a small amino acid and _h_ to a hydrophobic one. All three of these variants are found in subfamily IA. Individual models were made based on seeds exhibiting only o
Probab=65.06 E-value=3.7 Score=39.35 Aligned_cols=15 Identities=40% Similarity=0.558 Sum_probs=12.8
Q ss_pred EEEEeCCcceeeccc
Q 003896 139 AIVFDLDETLIVANT 153 (788)
Q Consensus 139 ~lV~DLDeTLi~A~t 153 (788)
+|+|||||||+....
T Consensus 1 ~viFD~DGTL~D~~~ 15 (175)
T TIGR01493 1 AMVFDVYGTLVDVHG 15 (175)
T ss_pred CeEEecCCcCcccHH
Confidence 589999999998763
No 144
>PRK09449 dUMP phosphatase; Provisional
Probab=64.12 E-value=3.9 Score=40.84 Aligned_cols=13 Identities=54% Similarity=0.621 Sum_probs=11.6
Q ss_pred EEEEeCCcceeec
Q 003896 139 AIVFDLDETLIVA 151 (788)
Q Consensus 139 ~lV~DLDeTLi~A 151 (788)
+|+|||||||+..
T Consensus 5 ~iiFDlDGTLid~ 17 (224)
T PRK09449 5 WILFDADETLFHF 17 (224)
T ss_pred EEEEcCCCchhcc
Confidence 6899999999963
No 145
>TIGR02463 MPGP_rel mannosyl-3-phosphoglycerate phosphatase-related protein. This family consists of members of the HAD superfamily, subfamily IIB. All members are closely related to mannosyl-3-phosphoglycerate phosphatase, the second enzyme in a two-step pathway for biosynthesis of mannosylglycerate, a compatible solute present in some thermophiles and in Dehalococcoides ethenogenes. However, members of this family are separable in a neighbor-joining tree constructed from a multiple sequence alignment and are found only in mesophiles that lack the companion mannosyl-3-phosphoglycerate synthase (TIGR02460). Members of this family are like to act on a compound related to yet distinct from mannosyl-3-phosphoglycerate.
Probab=63.18 E-value=6.7 Score=39.28 Aligned_cols=29 Identities=21% Similarity=0.273 Sum_probs=19.8
Q ss_pred EEEeCCcceeecccccchHHHHHHHHHHhh
Q 003896 140 IVFDLDETLIVANTMKSFEDRIEALRSWIA 169 (788)
Q Consensus 140 lV~DLDeTLi~A~t~~~~e~ri~~l~~w~~ 169 (788)
|++||||||+..... ..+.-+++|+.+..
T Consensus 2 i~~DlDGTLL~~~~~-~~~~~~~~l~~l~~ 30 (221)
T TIGR02463 2 VFSDLDGTLLDSHSY-DWQPAAPWLTRLQE 30 (221)
T ss_pred EEEeCCCCCcCCCCC-CcHHHHHHHHHHHH
Confidence 789999999976532 24445666766543
No 146
>TIGR02009 PGMB-YQAB-SF beta-phosphoglucomutase family hydrolase. All of these are members of the larger Haloacid dehalogenase (HAD) subfamily IA and include the "variant 3" glu-asp version of the third conserved HAD domain (TIGR01509).
Probab=62.81 E-value=3.6 Score=39.44 Aligned_cols=15 Identities=27% Similarity=0.676 Sum_probs=13.2
Q ss_pred EEEEeCCcceeeccc
Q 003896 139 AIVFDLDETLIVANT 153 (788)
Q Consensus 139 ~lV~DLDeTLi~A~t 153 (788)
+++|||||||+....
T Consensus 3 ~iiFD~DGTL~ds~~ 17 (185)
T TIGR02009 3 AVIFDMDGVIVDTAP 17 (185)
T ss_pred eEEEcCCCcccCChH
Confidence 589999999999863
No 147
>TIGR01662 HAD-SF-IIIA HAD-superfamily hydrolase, subfamily IIIA. In the case of histidinol phosphatase and PNK-3'-phosphatase, this model represents a domain of a bifunctional system. In the histidinol phosphatase HisB, a C-terminal domain is an imidazoleglycerol-phosphate dehydratase which catalyzes a related step in histidine biosynthesis. In PNK-3'-phosphatase, N- and C-terminal domains constitute the polynucleotide kinase and DNA-binding components of the enzyme.
Probab=62.08 E-value=8 Score=35.69 Aligned_cols=12 Identities=50% Similarity=0.684 Sum_probs=10.9
Q ss_pred EEEEeCCcceee
Q 003896 139 AIVFDLDETLIV 150 (788)
Q Consensus 139 ~lV~DLDeTLi~ 150 (788)
+|+||+|+||+.
T Consensus 2 ~~~~D~dgtL~~ 13 (132)
T TIGR01662 2 GVVLDLDGTLTD 13 (132)
T ss_pred EEEEeCCCceec
Confidence 689999999995
No 148
>PRK06769 hypothetical protein; Validated
Probab=61.97 E-value=17 Score=35.95 Aligned_cols=28 Identities=14% Similarity=0.086 Sum_probs=21.8
Q ss_pred EecCChHHHHHHHHHhccccEEEEEEeCCch
Q 003896 256 RLRPAWEDLRSYLIAKGRKRFEVYVCTMAER 286 (788)
Q Consensus 256 KLRPgweeLreFL~ak~sk~FElyVyTmgtR 286 (788)
.+-|++.+++++|+ .+-|.+.|.|++..
T Consensus 28 ~~~pgv~e~L~~Lk---~~G~~l~I~Tn~~~ 55 (173)
T PRK06769 28 TLFPFTKASLQKLK---ANHIKIFSFTNQPG 55 (173)
T ss_pred EECCCHHHHHHHHH---HCCCEEEEEECCch
Confidence 45699777777776 35699999999875
No 149
>PLN02770 haloacid dehalogenase-like hydrolase family protein
Probab=61.67 E-value=3.9 Score=42.35 Aligned_cols=15 Identities=40% Similarity=0.680 Sum_probs=13.3
Q ss_pred EEEEeCCcceeeccc
Q 003896 139 AIVFDLDETLIVANT 153 (788)
Q Consensus 139 ~lV~DLDeTLi~A~t 153 (788)
+|+|||||||+.+..
T Consensus 24 ~viFDlDGTLiDs~~ 38 (248)
T PLN02770 24 AVLFDVDGTLCDSDP 38 (248)
T ss_pred EEEEcCCCccCcCHH
Confidence 689999999999863
No 150
>TIGR01544 HAD-SF-IE haloacid dehalogenase superfamily, subfamily IE hydrolase, TIGR01544. This group of sequences was found during searches for members of the haloacid dehalogenase (HAD) superfamily. All of the conserved catalytic motifs are found. The placement of the variable domain between motifs 1 and 2 indicates membership in subfamily I of the superfamily, but these sequences are sufficiently different from any of the branches (IA, TIGR01493, TIGR01509, TIGR01549; IB, TIGR01488; IC, TIGR01494; ID, TIGR01658; IF TIGR01545) of that subfamily as to constitute a separate branch to now be called IE. Considering that the closest identifiable hit outside of the noise range is to a phosphoserine phosphatase, this group may be considered to be most closely allied to subfamily IB.
Probab=61.39 E-value=13 Score=40.61 Aligned_cols=47 Identities=17% Similarity=0.316 Sum_probs=36.1
Q ss_pred EEecCChHHHHHHHHHhccccEEEEEEeCCchHHHHHHHHh---hCCCCCccc
Q 003896 255 VRLRPAWEDLRSYLIAKGRKRFEVYVCTMAERDYALEMWRL---LDPEGHLIG 304 (788)
Q Consensus 255 VKLRPgweeLreFL~ak~sk~FElyVyTmgtR~YA~~IlrL---LDPdgklF~ 304 (788)
+++|||+.++.++|+ ..-.-+.|+|+|-+.++..+++. .++.-.++.
T Consensus 120 l~l~pG~~efl~~L~---~~GIpv~IvS~G~~~~Ie~vL~~lgl~~~~~~IvS 169 (277)
T TIGR01544 120 VMLKDGYENFFDKLQ---QHSIPVFIFSAGIGNVLEEVLRQAGVYHPNVKVVS 169 (277)
T ss_pred CccCcCHHHHHHHHH---HCCCcEEEEeCCcHHHHHHHHHHcCCCCcCceEEe
Confidence 568999666666665 46689999999999999999994 345555544
No 151
>PF13419 HAD_2: Haloacid dehalogenase-like hydrolase; PDB: 2FI1_A 2I6X_A 3SD7_A 4F71_A 4DFD_B 4F72_B 4DCC_A 3DDH_A 3KZX_A 2B0C_A ....
Probab=59.82 E-value=4.6 Score=37.24 Aligned_cols=14 Identities=50% Similarity=0.864 Sum_probs=12.5
Q ss_pred EEEeCCcceeeccc
Q 003896 140 IVFDLDETLIVANT 153 (788)
Q Consensus 140 lV~DLDeTLi~A~t 153 (788)
|+|||||||+....
T Consensus 1 iifD~dgtL~d~~~ 14 (176)
T PF13419_consen 1 IIFDLDGTLVDTDP 14 (176)
T ss_dssp EEEESBTTTEEHHH
T ss_pred cEEECCCCcEeCHH
Confidence 79999999998775
No 152
>PLN02423 phosphomannomutase
Probab=59.81 E-value=13 Score=38.80 Aligned_cols=30 Identities=20% Similarity=0.326 Sum_probs=19.8
Q ss_pred ceEEEEeCCcceeecccccch-HHHHHHHHHHh
Q 003896 137 CLAIVFDLDETLIVANTMKSF-EDRIEALRSWI 168 (788)
Q Consensus 137 ~L~lV~DLDeTLi~A~t~~~~-e~ri~~l~~w~ 168 (788)
++.++|||||||+.... .+ +..++++++..
T Consensus 7 ~~i~~~D~DGTLl~~~~--~i~~~~~~ai~~l~ 37 (245)
T PLN02423 7 GVIALFDVDGTLTAPRK--EATPEMLEFMKELR 37 (245)
T ss_pred ceEEEEeccCCCcCCCC--cCCHHHHHHHHHHH
Confidence 35566999999997653 23 44566666544
No 153
>TIGR00213 GmhB_yaeD D,D-heptose 1,7-bisphosphate phosphatase. This family of proteins formerly designated yaeD resembles the histidinol phosphatase domain of the bifunctional protein HisB. The member from E. coli has been characterized as D,D-heptose 1,7-bisphosphate phosphatase, GmhB, involved in inner core LPS assembly (PubMed:11751812).
Probab=59.44 E-value=37 Score=33.34 Aligned_cols=29 Identities=10% Similarity=0.027 Sum_probs=22.2
Q ss_pred EEecCChHHHHHHHHHhccccEEEEEEeCCch
Q 003896 255 VRLRPAWEDLRSYLIAKGRKRFEVYVCTMAER 286 (788)
Q Consensus 255 VKLRPgweeLreFL~ak~sk~FElyVyTmgtR 286 (788)
+++-|++.++.+.|+ .+-|.+.|.|+..+
T Consensus 25 ~~~~pgv~e~L~~Lk---~~G~~l~i~TN~~~ 53 (176)
T TIGR00213 25 FEFIDGVIDALRELK---KMGYALVLVTNQSG 53 (176)
T ss_pred eEECCCHHHHHHHHH---HCCCEEEEEeCCcc
Confidence 345699777777775 46799999999985
No 154
>TIGR02254 YjjG/YfnB HAD superfamily (subfamily IA) hydrolase, TIGR02254. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549). Most likely, these enzymes are phosphatases.
Probab=59.10 E-value=4.5 Score=39.90 Aligned_cols=16 Identities=31% Similarity=0.663 Sum_probs=14.0
Q ss_pred EEEEeCCcceeecccc
Q 003896 139 AIVFDLDETLIVANTM 154 (788)
Q Consensus 139 ~lV~DLDeTLi~A~t~ 154 (788)
+++||+|||||....+
T Consensus 3 ~viFD~DGTL~d~~~~ 18 (224)
T TIGR02254 3 TLLFDLDDTILDFQAA 18 (224)
T ss_pred EEEEcCcCcccccchH
Confidence 5899999999998764
No 155
>cd00873 KU80 Ku-core domain, Ku80 subfamily; Ku80 is a subunit of the Ku protein, which plays a key role in multiple nuclear processes such as DNA repair, chromosome maintenance, transcription regulation, and V(D)J recombination. The mechanism underlying the regulation of all the diverse functions of Ku is still unclear, although it seems that Ku is a multifunctional protein that works in nuclei. In mammalian cells, the Ku heterodimer recruits the catalytic subunit of DNA-dependent protein kinase (DNA-PK), which is dependent on its association with the Ku70/80 heterodimer bound to DNA for its protein kinase activity.
Probab=58.22 E-value=27 Score=37.86 Aligned_cols=90 Identities=11% Similarity=0.053 Sum_probs=64.0
Q ss_pred CCCCceEEeeecCCCCCCCcchhhhhcccCceeeecCCCCCCCchhHHHHHHHhhcccccEEEEeC---CeeEEEEec-C
Q 003896 32 FPNNEIRIRHISPSSERCIPLSILHTISSFSLRCKLESSAPVEQPHLINLHASCFYEFKTAVVVIG---DEEIHLVAM-P 107 (788)
Q Consensus 32 ~~~~~i~i~~~~~~~e~~~pl~~lh~~~~~~~~~~~~~~~~~~~~~l~~lh~~~~~e~ktaVv~~~---~~elhLva~-~ 107 (788)
.-..+|.|.+|-+.++- ++. |.+....+-...+ +......++..|+..|.+.+|.||++.- ++..+|+|+ |
T Consensus 94 ~~~~~l~ilgF~~~~~i-~~~---~~~~~s~~l~P~~-~~~~~~~a~~aL~~am~~~~k~aI~r~v~r~~~~p~l~aL~P 168 (300)
T cd00873 94 STSKGLDILGFIKASNV-PRY---YLMGESSYVVPQQ-DDEAAALAFSALVRALAELDKYAIARYVYKDNSEPQLGVLFP 168 (300)
T ss_pred CCCCceEEEeeccHHHC-Chh---heeCCcEEEEcCC-CChhHHHHHHHHHHHHHhCCCEEEEEEEEcCCCCcEEEEEec
Confidence 34688999999888632 332 5555444444444 4444678999999999999999999983 458899995 5
Q ss_pred CCCCCCceEeeeecCcchhHh
Q 003896 108 SKQKKFPCFWCYSVSSGLYNS 128 (788)
Q Consensus 108 ~~~~~~p~F~~~~~~~g~y~~ 128 (788)
.......||+...+| ..|.
T Consensus 169 ~~~~~~~~l~l~~LP--f~eD 187 (300)
T cd00873 169 RIKEDYECLVLVRLP--FAED 187 (300)
T ss_pred cccCCCCEEEEEecC--chhh
Confidence 444456799988888 5543
No 156
>TIGR01449 PGP_bact 2-phosphoglycolate phosphatase, prokaryotic. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolase enzymes (pfam00702).
Probab=58.17 E-value=3.8 Score=40.33 Aligned_cols=13 Identities=46% Similarity=0.820 Sum_probs=11.2
Q ss_pred EEEeCCcceeecc
Q 003896 140 IVFDLDETLIVAN 152 (788)
Q Consensus 140 lV~DLDeTLi~A~ 152 (788)
|+||+||||+.+.
T Consensus 1 viFD~DGTL~Ds~ 13 (213)
T TIGR01449 1 VLFDLDGTLVDSA 13 (213)
T ss_pred CeecCCCccccCH
Confidence 5899999999754
No 157
>PLN03017 trehalose-phosphatase
Probab=57.32 E-value=11 Score=42.71 Aligned_cols=33 Identities=18% Similarity=0.375 Sum_probs=24.4
Q ss_pred eeeecCc--chhHhHHHhhhccceEEEEeCCccee
Q 003896 117 WCYSVSS--GLYNSCLGMLNLRCLAIVFDLDETLI 149 (788)
Q Consensus 117 ~~~~~~~--g~y~~~~~lL~~r~L~lV~DLDeTLi 149 (788)
|.-..|. ..++......+.+++.|++|+||||+
T Consensus 89 w~~~~psal~~~~~~~~~~~~k~~llflD~DGTL~ 123 (366)
T PLN03017 89 WIMQHPSALEMFEQIMEASRGKQIVMFLDYDGTLS 123 (366)
T ss_pred HHhhCChHHHHHHHHHHHhcCCCeEEEEecCCcCc
Confidence 4434443 34556667778999999999999999
No 158
>TIGR01490 HAD-SF-IB-hyp1 HAD-superfamily subfamily IB hydrolase, TIGR01490. A subset of these sequences, including the Caulobacter crescentus CicA protein, cluster together and may represent a separate equivalog.
Probab=57.31 E-value=4.2 Score=39.89 Aligned_cols=16 Identities=38% Similarity=0.557 Sum_probs=13.8
Q ss_pred EEEeCCcceeeccccc
Q 003896 140 IVFDLDETLIVANTMK 155 (788)
Q Consensus 140 lV~DLDeTLi~A~t~~ 155 (788)
.+||+||||+...++-
T Consensus 2 a~FD~DgTL~~~~s~~ 17 (202)
T TIGR01490 2 AFFDFDGTLTAKDTLF 17 (202)
T ss_pred eEEccCCCCCCCchHH
Confidence 6899999999988654
No 159
>KOG1615 consensus Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=56.43 E-value=65 Score=34.40 Aligned_cols=49 Identities=20% Similarity=0.213 Sum_probs=39.4
Q ss_pred ecCChHHHHHHHHHhccccEEEEEEeCCchHHHHHHHHhhCCCC-Cccccccc
Q 003896 257 LRPAWEDLRSYLIAKGRKRFEVYVCTMAERDYALEMWRLLDPEG-HLIGSKQL 308 (788)
Q Consensus 257 LRPgweeLreFL~ak~sk~FElyVyTmgtR~YA~~IlrLLDPdg-klF~~r~l 308 (788)
+-||.++|-.+|+ .+.-.||+-.-|-|..|.-|...|+-+. +.|.++++
T Consensus 89 lT~Gi~eLv~~L~---~~~~~v~liSGGF~~~i~~Va~~Lgi~~~n~yAN~l~ 138 (227)
T KOG1615|consen 89 LTPGIRELVSRLH---ARGTQVYLISGGFRQLIEPVAEQLGIPKSNIYANELL 138 (227)
T ss_pred cCCCHHHHHHHHH---HcCCeEEEEcCChHHHHHHHHHHhCCcHhhhhhheee
Confidence 4599999999998 5778999999999999999999988543 44554433
No 160
>PRK14988 GMP/IMP nucleotidase; Provisional
Probab=56.40 E-value=5.5 Score=40.82 Aligned_cols=14 Identities=29% Similarity=0.479 Sum_probs=12.3
Q ss_pred eEEEEeCCcceeec
Q 003896 138 LAIVFDLDETLIVA 151 (788)
Q Consensus 138 L~lV~DLDeTLi~A 151 (788)
-+++|||||||+..
T Consensus 11 k~vIFDlDGTL~d~ 24 (224)
T PRK14988 11 DTVLLDMDGTLLDL 24 (224)
T ss_pred CEEEEcCCCCccch
Confidence 36999999999994
No 161
>KOG3792 consensus Transcription factor NFAT, subunit NF90 [General function prediction only]
Probab=56.20 E-value=9.3 Score=46.40 Aligned_cols=62 Identities=19% Similarity=0.060 Sum_probs=50.0
Q ss_pred CChHHHHHHHHHhCCCCceEEEEeeeC---CCceEEEEEEECCeEeEEEecCCHHHHHHHHHHHHHHHHH
Q 003896 625 YLSIGVLQEIGKRCSSKVEFRSVVSTS---KDLQFSVEVLFTGEKIGVGMGKTRKDAQQQAAENALHYLA 691 (788)
Q Consensus 625 ~dyKS~LQE~~QK~~~~peYelveesG---H~~~FtveV~I~Gkk~G~G~GsSKKEAEQ~AAK~AL~~L~ 691 (788)
++....|.|- .....|++..++| |.++|...|...|+++ .|.|..+|-|+.-||..|++.+.
T Consensus 506 K~vsd~L~Ek----~rg~k~El~set~~gs~~~R~v~gV~rvG~~a-kG~~~~gd~a~~~a~Lca~~pt~ 570 (816)
T KOG3792|consen 506 KLVSDELAEK----RRGDKYELPSETGTGSHDKRFVKGVMRVGILA-KGLLLNGDRAVELALLCAEKPTS 570 (816)
T ss_pred cchhHHHhhh----ccccceecccccCCCCCCceeeeeeeeeehhh-ccccccchHHHHHHHHhccCccc
Confidence 4555666664 4446788876664 9999999999999755 99999999999999999987664
No 162
>TIGR01487 SPP-like sucrose-phosphate phosphatase-like hydrolase, Archaeal. TIGR01482, in turn, is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases.
Probab=54.52 E-value=12 Score=37.40 Aligned_cols=30 Identities=33% Similarity=0.458 Sum_probs=19.6
Q ss_pred EEEEeCCcceeecccccch-HHHHHHHHHHhhc
Q 003896 139 AIVFDLDETLIVANTMKSF-EDRIEALRSWIAR 170 (788)
Q Consensus 139 ~lV~DLDeTLi~A~t~~~~-e~ri~~l~~w~~~ 170 (788)
.|++||||||+... +.+ +..+++++++...
T Consensus 3 ~v~~DlDGTLl~~~--~~i~~~~~~~i~~l~~~ 33 (215)
T TIGR01487 3 LVAIDIDGTLTEPN--RMISERAIEAIRKAEKK 33 (215)
T ss_pred EEEEecCCCcCCCC--cccCHHHHHHHHHHHHC
Confidence 57899999999643 223 3455666666443
No 163
>TIGR01668 YqeG_hyp_ppase HAD superfamily (subfamily IIIA) phosphatase, TIGR01668. This family consists of sequences from fungi, plants, cyanobacteria, gram-positive bacteria and Deinococcus. There is presently no characterization of any sequence in this family.
Probab=54.28 E-value=23 Score=34.99 Aligned_cols=84 Identities=15% Similarity=0.060 Sum_probs=49.7
Q ss_pred cCChHHHHHHHHHhccccEEEEEEeCCc-hHHHHHHHHhhCCCCCccccccccCceEeecCCCcccHhhhcccCCCCCCe
Q 003896 258 RPAWEDLRSYLIAKGRKRFEVYVCTMAE-RDYALEMWRLLDPEGHLIGSKQLLDRVVCVKSGSRKSLLNVFQRGLCHPKM 336 (788)
Q Consensus 258 RPgweeLreFL~ak~sk~FElyVyTmgt-R~YA~~IlrLLDPdgklF~~r~l~~RIisresg~~KsL~rLf~~g~~d~~~ 336 (788)
-|++.++.++|+ ..-+.++|.|++. +..+..+++.++-.- +++ +.+. ...-+..++..-++.++.
T Consensus 45 ~pgv~e~L~~Lk---~~g~~l~I~Sn~~~~~~~~~~~~~~gl~~-~~~---------~~KP-~p~~~~~~l~~~~~~~~~ 110 (170)
T TIGR01668 45 YPALRDWIEELK---AAGRKLLIVSNNAGEQRAKAVEKALGIPV-LPH---------AVKP-PGCAFRRAHPEMGLTSEQ 110 (170)
T ss_pred ChhHHHHHHHHH---HcCCEEEEEeCCchHHHHHHHHHHcCCEE-EcC---------CCCC-ChHHHHHHHHHcCCCHHH
Confidence 478555555554 3449999999999 788888877665321 111 0111 111233333222246788
Q ss_pred EEEEeCCc--cccccCCCCCeE
Q 003896 337 AMVIDDRC--KVWEDKDQPRVH 356 (788)
Q Consensus 337 VVIIDDR~--dVW~~~~~NlI~ 356 (788)
+++|+|+. |+-..... ++.
T Consensus 111 ~l~IGDs~~~Di~aA~~a-Gi~ 131 (170)
T TIGR01668 111 VAVVGDRLFTDVMGGNRN-GSY 131 (170)
T ss_pred EEEECCcchHHHHHHHHc-CCe
Confidence 99999995 78877665 443
No 164
>PLN02779 haloacid dehalogenase-like hydrolase family protein
Probab=52.76 E-value=7.3 Score=41.63 Aligned_cols=14 Identities=36% Similarity=0.662 Sum_probs=12.8
Q ss_pred EEEEeCCcceeecc
Q 003896 139 AIVFDLDETLIVAN 152 (788)
Q Consensus 139 ~lV~DLDeTLi~A~ 152 (788)
+|+||+||||+.+.
T Consensus 42 ~VIFDlDGTLvDS~ 55 (286)
T PLN02779 42 ALLFDCDGVLVETE 55 (286)
T ss_pred EEEEeCceeEEccc
Confidence 78999999999976
No 165
>TIGR01486 HAD-SF-IIB-MPGP mannosyl-3-phosphoglycerate phosphatase family. This small group of proteins is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. Several members of this family from thermophiles (and from Dehalococcoides ethenogenes) are now known to act as mannosyl-3-phosphoglycerate (MPG) phosphatase. In these cases, the enzyme acts after MPG synthase to make the compatible solute mannosylglycerate. We propose that other mesophilic members of this family do not act as mannosyl-3-phosphoglycerate phosphatase. A member of this family is found in Escherichia coli, which appears to lack MPG synthase. Mannosylglycerate is imported in E. coli by phosphoenolpyruvate-dependent transporter (PubMed:14645248), but it appears the phosphorylation is not on the glycerate moiety, that the phosphorylated import is degraded by an alpha-mannosidase from an adjacent gene, and that E. coli would have no pathway to obta
Probab=51.55 E-value=12 Score=38.62 Aligned_cols=30 Identities=27% Similarity=0.269 Sum_probs=20.4
Q ss_pred EEEeCCcceeecccccchHHHHHHHHHHhhc
Q 003896 140 IVFDLDETLIVANTMKSFEDRIEALRSWIAR 170 (788)
Q Consensus 140 lV~DLDeTLi~A~t~~~~e~ri~~l~~w~~~ 170 (788)
|++||||||+..... .++..+++++.....
T Consensus 2 i~~DlDGTll~~~~~-~~~~~~~~i~~l~~~ 31 (256)
T TIGR01486 2 IFTDLDGTLLDPHGY-DWGPAKEVLERLQEL 31 (256)
T ss_pred EEEcCCCCCcCCCCc-CchHHHHHHHHHHHC
Confidence 789999999987651 234456666665443
No 166
>TIGR01456 CECR5 HAD-superfamily class IIA hydrolase, TIGR01456, CECR5. The Schizosaccharomyces pombe sequence (EGAD|138276) is annotated as "phosphatidyl synthase," however this is due entirely to a C-terminal region of the protein (outside the region of similarity of this model) which is highly homologous to a family of CDP-alcohol phosphatidyltransferases. (Thus, the annotation of GP|4226073 from C. elegans as similar to phosphatidyl synthase, is a mistake as this gene does not contain the C-terminal portion). The physical connection of the phosphatidyl synthase and the HAD-superfamily hydrolase domain in S. pombe may, however, be an important clue to the substrate for the hydrolases in this equivalog.
Probab=51.45 E-value=13 Score=40.45 Aligned_cols=29 Identities=24% Similarity=0.378 Sum_probs=21.9
Q ss_pred eEEEEeCCcceeecccccchHHHHHHHHHHh
Q 003896 138 LAIVFDLDETLIVANTMKSFEDRIEALRSWI 168 (788)
Q Consensus 138 L~lV~DLDeTLi~A~t~~~~e~ri~~l~~w~ 168 (788)
++++||+||||+..... ++.-.++++...
T Consensus 1 ~~~ifD~DGvL~~g~~~--i~ga~eal~~L~ 29 (321)
T TIGR01456 1 FGFAFDIDGVLFRGKKP--IAGASDALRRLN 29 (321)
T ss_pred CEEEEeCcCceECCccc--cHHHHHHHHHHh
Confidence 57999999999998754 666666665543
No 167
>PRK10826 2-deoxyglucose-6-phosphatase; Provisional
Probab=51.41 E-value=7.6 Score=39.01 Aligned_cols=16 Identities=44% Similarity=0.688 Sum_probs=13.5
Q ss_pred eEEEEeCCcceeeccc
Q 003896 138 LAIVFDLDETLIVANT 153 (788)
Q Consensus 138 L~lV~DLDeTLi~A~t 153 (788)
-+|+||+||||+....
T Consensus 8 k~iiFD~DGTL~d~~~ 23 (222)
T PRK10826 8 LAAIFDMDGLLIDSEP 23 (222)
T ss_pred cEEEEcCCCCCCcCHH
Confidence 4789999999998753
No 168
>PLN02151 trehalose-phosphatase
Probab=51.06 E-value=17 Score=41.07 Aligned_cols=33 Identities=21% Similarity=0.374 Sum_probs=23.8
Q ss_pred eeeecCcc--hhHhHHHhhhccceEEEEeCCccee
Q 003896 117 WCYSVSSG--LYNSCLGMLNLRCLAIVFDLDETLI 149 (788)
Q Consensus 117 ~~~~~~~g--~y~~~~~lL~~r~L~lV~DLDeTLi 149 (788)
|.-..|.. .++....+.+.+++.|+||+||||+
T Consensus 76 w~~~~p~a~~~~~~~~~~~~~~~~ll~lDyDGTL~ 110 (354)
T PLN02151 76 WIKEHPSALNMFEEILHKSEGKQIVMFLDYDGTLS 110 (354)
T ss_pred HHHhCChHHHHHHHHHHhhcCCceEEEEecCccCC
Confidence 44444433 4555566677788999999999999
No 169
>PLN02887 hydrolase family protein
Probab=50.47 E-value=15 Score=43.71 Aligned_cols=41 Identities=24% Similarity=0.331 Sum_probs=28.4
Q ss_pred HHhhhccceEEEEeCCcceeecccccchHHHHHHHHHHhhcC
Q 003896 130 LGMLNLRCLAIVFDLDETLIVANTMKSFEDRIEALRSWIARE 171 (788)
Q Consensus 130 ~~lL~~r~L~lV~DLDeTLi~A~t~~~~e~ri~~l~~w~~~~ 171 (788)
+|.....-=.|++||||||+.... .--+..+++++.|....
T Consensus 301 ~~~~~~~iKLIa~DLDGTLLn~d~-~Is~~t~eAI~kl~ekG 341 (580)
T PLN02887 301 LRFYKPKFSYIFCDMDGTLLNSKS-QISETNAKALKEALSRG 341 (580)
T ss_pred hhhhccCccEEEEeCCCCCCCCCC-ccCHHHHHHHHHHHHCC
Confidence 344444445789999999997642 12356788888888665
No 170
>TIGR01656 Histidinol-ppas histidinol-phosphate phosphatase family domain. This domain is a member of the haloacid-dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. This superfamily is distinguished by the presence of three motifs: an N-terminal motif containing the nucleophilic aspartate, a central motif containing an conserved serine or threonine, and a C-terminal motif containing a conserved lysine (or arginine) and conserved aspartates. More specifically, the domian modelled here is a member of subfamily III of the HAD-superfamily by virtue of lacking a "capping" domain in either of the two common positions, between motifs 1 and 2, or between motifs 2 and 3.
Probab=50.18 E-value=16 Score=34.83 Aligned_cols=15 Identities=20% Similarity=0.268 Sum_probs=13.4
Q ss_pred EEEEeCCcceeeccc
Q 003896 139 AIVFDLDETLIVANT 153 (788)
Q Consensus 139 ~lV~DLDeTLi~A~t 153 (788)
++.||+|+||+.-..
T Consensus 2 ~~~~d~dgtl~~~~~ 16 (147)
T TIGR01656 2 ALFLDRDGVINEDTV 16 (147)
T ss_pred eEEEeCCCceeccCC
Confidence 588999999999885
No 171
>KOG2777 consensus tRNA-specific adenosine deaminase 1 [RNA processing and modification]
Probab=50.10 E-value=8.5 Score=45.53 Aligned_cols=45 Identities=29% Similarity=0.435 Sum_probs=40.1
Q ss_pred ceEEEEeeeC--CCceEEEEEEECCeEeEEEecCCHHHHHHHHHHHHHHHHHH
Q 003896 642 VEFRSVVSTS--KDLQFSVEVLFTGEKIGVGMGKTRKDAQQQAAENALHYLAE 692 (788)
Q Consensus 642 peYelveesG--H~~~FtveV~I~Gkk~G~G~GsSKKEAEQ~AAK~AL~~L~~ 692 (788)
+.|..+.+.| |.+.|.++|.|+|..+- ||.|++.||+.|+..+.+
T Consensus 10 ~~~~~~~q~~p~~~p~~~~~~~v~~~~~~------~k~~~~~~a~~~~~~~~~ 56 (542)
T KOG2777|consen 10 LQYNLVSQTGPVHAPLFPFSVEVNGQEFP------KKKAKQRAAEKALRVFLQ 56 (542)
T ss_pred cccccccccCCCCCCcccceEEecccccc------cccccchhhhHHHHHHhh
Confidence 7888888888 99999999999997654 999999999999988854
No 172
>PRK10187 trehalose-6-phosphate phosphatase; Provisional
Probab=50.00 E-value=14 Score=39.15 Aligned_cols=15 Identities=47% Similarity=0.479 Sum_probs=13.4
Q ss_pred ceEEEEeCCcceeec
Q 003896 137 CLAIVFDLDETLIVA 151 (788)
Q Consensus 137 ~L~lV~DLDeTLi~A 151 (788)
++.|++|+||||+..
T Consensus 14 ~~li~~D~DGTLl~~ 28 (266)
T PRK10187 14 NYAWFFDLDGTLAEI 28 (266)
T ss_pred CEEEEEecCCCCCCC
Confidence 588999999999974
No 173
>TIGR01680 Veg_Stor_Prot vegetative storage protein. The proteins represented by this model are close relatives of the plant acid phosphatases (TIGR01675), are limited to members of the Phaseoleae including Glycine max (soybean) and Phaseolus vulgaris (kidney bean). These proteins are highly expressed in the leaves of repeatedly depodded plants. VSP differs most strinkingly from the acid phosphatases in the lack of the conserved nucleophilic aspartate residue in the N-terminus, thus, they should be inactive as phosphatases. This issue was confused by the publication in 1992 of an article claiming activity for the Glycine max VSP. In 1994 this assertion was refuted by the separation of the activity from the VSP.
Probab=49.98 E-value=10 Score=41.42 Aligned_cols=16 Identities=19% Similarity=0.295 Sum_probs=13.9
Q ss_pred ccceEEEEeCCcceee
Q 003896 135 LRCLAIVFDLDETLIV 150 (788)
Q Consensus 135 ~r~L~lV~DLDeTLi~ 150 (788)
..+.++|||+|||++-
T Consensus 99 ~~~dA~V~DIDET~Ls 114 (275)
T TIGR01680 99 HEKDTFLFNIDGTALS 114 (275)
T ss_pred CCCCEEEEECcccccc
Confidence 3579999999999995
No 174
>PRK00192 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=49.47 E-value=15 Score=38.46 Aligned_cols=31 Identities=35% Similarity=0.410 Sum_probs=20.3
Q ss_pred eEEEEeCCcceeecccccchHHHHHHHHHHhh
Q 003896 138 LAIVFDLDETLIVANTMKSFEDRIEALRSWIA 169 (788)
Q Consensus 138 L~lV~DLDeTLi~A~t~~~~e~ri~~l~~w~~ 169 (788)
-.|++||||||+.... ...+.-+++|+.+..
T Consensus 5 kli~~DlDGTLl~~~~-~~~~~~~~ai~~l~~ 35 (273)
T PRK00192 5 LLVFTDLDGTLLDHHT-YSYEPAKPALKALKE 35 (273)
T ss_pred eEEEEcCcccCcCCCC-cCcHHHHHHHHHHHH
Confidence 4789999999997443 234555566655443
No 175
>PRK05446 imidazole glycerol-phosphate dehydratase/histidinol phosphatase; Provisional
Probab=48.94 E-value=53 Score=37.02 Aligned_cols=28 Identities=11% Similarity=0.099 Sum_probs=21.6
Q ss_pred EEEecCChHHHHHHHHHhccccEEEEEEeCC
Q 003896 254 LVRLRPAWEDLRSYLIAKGRKRFEVYVCTMA 284 (788)
Q Consensus 254 ~VKLRPgweeLreFL~ak~sk~FElyVyTmg 284 (788)
.+++.|++.+++++|+ .+.|.++|.|+.
T Consensus 28 ~~~l~pGV~e~L~~Lk---~~G~kL~IvTNq 55 (354)
T PRK05446 28 KLAFEPGVIPALLKLQ---KAGYKLVMVTNQ 55 (354)
T ss_pred cceECcCHHHHHHHHH---hCCCeEEEEECC
Confidence 4678899666666665 467999999994
No 176
>TIGR01459 HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolase, TIGR01459. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram negative and primarily alpha proteobacteria. Only one sequence hase been annotated as other than "hypothetical." That one, from Brucella, is annotated as related to NagD, but only by sequence similarity and should be treated with some skepticism. (See comments for Class IIA subfamily)
Probab=48.40 E-value=30 Score=35.71 Aligned_cols=40 Identities=15% Similarity=0.109 Sum_probs=29.5
Q ss_pred ecCChHHHHHHHHHhccccEEEEEEeCCchHHHH--HHHHhhCCC
Q 003896 257 LRPAWEDLRSYLIAKGRKRFEVYVCTMAERDYAL--EMWRLLDPE 299 (788)
Q Consensus 257 LRPgweeLreFL~ak~sk~FElyVyTmgtR~YA~--~IlrLLDPd 299 (788)
+-|++.++.+.|+ ..-+.++|.||+++..+. +.++.++-.
T Consensus 25 ~~pga~e~L~~L~---~~G~~~~ivTN~~~~~~~~~~~L~~~gl~ 66 (242)
T TIGR01459 25 TYPGAVQNLNKII---AQGKPVYFVSNSPRNIFSLHKTLKSLGIN 66 (242)
T ss_pred cCccHHHHHHHHH---HCCCEEEEEeCCCCChHHHHHHHHHCCCC
Confidence 4599777777776 468899999999998876 555555443
No 177
>PF02169 LPP20: LPP20 lipoprotein; InterPro: IPR002217 A major antigen has been recognised in Helicobacter pylori, a protein with an apparent molecular weight of 20,000 and mass 18,283 kDa []. DNA sequence analysis revealed a 525 bp gene, encoding a 175-amino acid residue product with a typical 21-residue lipoprotein signal peptide and consensus prolipoprotein processing site []. Results of experimental work with Lpp20 are consistent with it being a nonessential lipoprotein []. Prokaryotic membrane lipoproteins are synthesised with precursor signal peptides that are cleaved by specific peptidases (signal peptidase II). The enzyme recognises a conserved sequence, cutting upstream of a cysteine residue to which a glyceride-fatty acid lipid is attached [].; GO: 0009279 cell outer membrane
Probab=48.30 E-value=24 Score=30.84 Aligned_cols=32 Identities=25% Similarity=0.301 Sum_probs=24.9
Q ss_pred CeEeEEEecCCHHHHHHHHHHHHHHHHHHhhh
Q 003896 664 GEKIGVGMGKTRKDAQQQAAENALHYLAEKYV 695 (788)
Q Consensus 664 Gkk~G~G~GsSKKEAEQ~AAK~AL~~L~~~yl 695 (788)
...+|.|.|.+++.|+++|-....+.|.....
T Consensus 12 ~~l~a~G~~~~~~~A~~~A~~~la~~i~~~v~ 43 (92)
T PF02169_consen 12 QYLYAVGSGSSREQAKQDALANLAEQISVVVI 43 (92)
T ss_pred cEEEEEEcccChHHHHHHHHHHHHHheeEEEE
Confidence 34689999999999998888887776755443
No 178
>PRK08942 D,D-heptose 1,7-bisphosphate phosphatase; Validated
Probab=48.12 E-value=60 Score=31.90 Aligned_cols=28 Identities=18% Similarity=0.078 Sum_probs=21.2
Q ss_pred EecCChHHHHHHHHHhccccEEEEEEeCCch
Q 003896 256 RLRPAWEDLRSYLIAKGRKRFEVYVCTMAER 286 (788)
Q Consensus 256 KLRPgweeLreFL~ak~sk~FElyVyTmgtR 286 (788)
.+.|++.++.+.|+ .+-|.+.|.|++++
T Consensus 29 ~~~pgv~e~L~~Lk---~~g~~l~I~Tn~~~ 56 (181)
T PRK08942 29 IPIPGSIEAIARLK---QAGYRVVVATNQSG 56 (181)
T ss_pred EECCCHHHHHHHHH---HCCCEEEEEeCCcc
Confidence 46699777666665 35699999999874
No 179
>TIGR02244 HAD-IG-Ncltidse HAD superfamily (subfamily IG) hydrolase, 5'-nucleotidase. A TIGRFAMs model (TIGR01993) represents a (putative) family of _pyrimidine_ 5'-nucleotidases which are also subfamily I HAD's, which should not be confused with the current model.
Probab=48.00 E-value=25 Score=39.53 Aligned_cols=43 Identities=19% Similarity=0.165 Sum_probs=34.9
Q ss_pred eEEEEecCChHHHHHHHHHhccccEEEEEEeCCchHHHHHHHHhh-C
Q 003896 252 SVLVRLRPAWEDLRSYLIAKGRKRFEVYVCTMAERDYALEMWRLL-D 297 (788)
Q Consensus 252 ~y~VKLRPgweeLreFL~ak~sk~FElyVyTmgtR~YA~~IlrLL-D 297 (788)
.-||+.-|++.++++.|+ ..-.-+.|-|++.+.|++.+++.| +
T Consensus 180 ~~yv~~~pgl~elL~~Lr---~~G~klfLvTNS~~~yt~~im~~l~g 223 (343)
T TIGR02244 180 EKYVLRDPKLPLFLSKLK---EHGKKLFLLTNSDYDYTDKGMKYLLG 223 (343)
T ss_pred HHHhccchhHHHHHHHHH---HCCCeEEEEeCCCHHHHHHHHHHhhC
Confidence 357888999666666665 456789999999999999999986 6
No 180
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=47.89 E-value=12 Score=38.63 Aligned_cols=23 Identities=22% Similarity=0.287 Sum_probs=18.1
Q ss_pred HhhhccceEEEEeCCcceeeccc
Q 003896 131 GMLNLRCLAIVFDLDETLIVANT 153 (788)
Q Consensus 131 ~lL~~r~L~lV~DLDeTLi~A~t 153 (788)
.|.++--=+||+|||+|||-=..
T Consensus 22 ~L~~~Gikgvi~DlDNTLv~wd~ 44 (175)
T COG2179 22 ILKAHGIKGVILDLDNTLVPWDN 44 (175)
T ss_pred HHHHcCCcEEEEeccCceecccC
Confidence 56666667999999999996553
No 181
>TIGR02471 sucr_syn_bact_C sucrose phosphate synthase, sucrose phosphatase-like domain, bacterial. Sucrose phosphate synthase (SPS) and sucrose phosphate phosphatase (SPP) are the last two enzymes of sucrose biosynthesis. In cyanobacteria and plants, the C-terminal region of most or all versions of SPS has a domain homologous to the known SPP. This domain may serve a binding or regulatory rather than catalytic function. Sequences in this family are bacterial C-terminal regions found in all but two of the putative bacterial sucrose phosphate synthases described by TIGR02472.
Probab=46.89 E-value=13 Score=37.90 Aligned_cols=23 Identities=35% Similarity=0.473 Sum_probs=16.5
Q ss_pred EEEeCCcceeecccccchHHHHHHH
Q 003896 140 IVFDLDETLIVANTMKSFEDRIEAL 164 (788)
Q Consensus 140 lV~DLDeTLi~A~t~~~~e~ri~~l 164 (788)
|++||||||+. ..+.+.++.+++
T Consensus 2 i~~DlDgTLl~--~~~~~~~~~~~~ 24 (236)
T TIGR02471 2 IITDLDNTLLG--DDEGLASFVELL 24 (236)
T ss_pred eEEeccccccC--CHHHHHHHHHHH
Confidence 78999999997 445666655444
No 182
>TIGR00685 T6PP trehalose-phosphatase. At least 18 distinct sequences from Arabidopsis have been identified, roughly half of these are of the fungal type, with a fused synthase and half are like the bacterial members having only the phosphatase domain. It has been suggested that trehalose is being used in Arabidopsis as a regulatory molecule in development and possibly other processes.
Probab=46.36 E-value=22 Score=36.83 Aligned_cols=17 Identities=41% Similarity=0.366 Sum_probs=14.3
Q ss_pred cceEEEEeCCcceeecc
Q 003896 136 RCLAIVFDLDETLIVAN 152 (788)
Q Consensus 136 r~L~lV~DLDeTLi~A~ 152 (788)
|+..|+||+||||+--.
T Consensus 2 ~~~~l~lD~DGTL~~~~ 18 (244)
T TIGR00685 2 RKRAFFFDYDGTLSEIV 18 (244)
T ss_pred CcEEEEEecCccccCCc
Confidence 67889999999998643
No 183
>TIGR01457 HAD-SF-IIA-hyp2 HAD-superfamily subfamily IIA hydrolase, TIGR01457. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram positive (low-GC) bacteria. Sequences found in this model are annotated variously as related to NagD or 4-nitrophenyl phosphatase, and this hypothetical equivalog, of all of those within the Class IIA subfamily, is most closely related to the E. coli NagD enzyme and the PGP_euk equivalog (TIGR01452). However, there is presently no evidence that this hypothetical equivalog has the same function of either those.
Probab=44.30 E-value=18 Score=37.91 Aligned_cols=31 Identities=16% Similarity=0.255 Sum_probs=23.2
Q ss_pred EEEEeCCcceeecccccchHHHHHHHHHHhhcC
Q 003896 139 AIVFDLDETLIVANTMKSFEDRIEALRSWIARE 171 (788)
Q Consensus 139 ~lV~DLDeTLi~A~t~~~~e~ri~~l~~w~~~~ 171 (788)
.++||+||||+.... .+..-+++++++....
T Consensus 3 ~~~~D~DGtl~~~~~--~i~~a~~~l~~l~~~g 33 (249)
T TIGR01457 3 GYLIDLDGTMYKGKE--RIPEAETFVHELQKRD 33 (249)
T ss_pred EEEEeCCCceEcCCe--eCcCHHHHHHHHHHCC
Confidence 588999999998874 3556677777666544
No 184
>PF05116 S6PP: Sucrose-6F-phosphate phosphohydrolase; InterPro: IPR006380 This family of sequences represent sucrose phosphate phosphohydrolase (SPP) from plants and cyanobacteria []. SPP is a member of the Class IIB subfamily of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. SPP catalyzes the final step in the biosynthesis of sucrose, a critically important molecule for plants. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.; PDB: 1TJ5_A 2B1Q_A 1TJ4_A 1S2O_A 1U2T_A 2D2V_A 1TJ3_A 1U2S_A 2B1R_A 3GYG_B ....
Probab=43.65 E-value=23 Score=37.17 Aligned_cols=13 Identities=46% Similarity=0.429 Sum_probs=11.9
Q ss_pred ceEEEEeCCccee
Q 003896 137 CLAIVFDLDETLI 149 (788)
Q Consensus 137 ~L~lV~DLDeTLi 149 (788)
++.||.|||+|||
T Consensus 2 ~~ll~sDlD~Tl~ 14 (247)
T PF05116_consen 2 PRLLASDLDGTLI 14 (247)
T ss_dssp SEEEEEETBTTTB
T ss_pred CEEEEEECCCCCc
Confidence 5789999999999
No 185
>TIGR01458 HAD-SF-IIA-hyp3 HAD-superfamily subfamily IIA hydrolase, TIGR01458. This hypothetical equivalog is a member of the IIA subfamily (TIGR01460) of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. One sequence (GP|10716807) has been annotated as a "phospholysine phosphohistidine inorganic pyrophosphatase," probably in reference to studies on similarly described (but unsequenced) enzymes from bovine and rat tissues. However, the supporting information for this annotation has never been published.
Probab=42.13 E-value=20 Score=37.68 Aligned_cols=89 Identities=20% Similarity=0.243 Sum_probs=46.1
Q ss_pred CChHHHHHHHHHhccccEEEEEEeCCchHHHHHHHHhhCCCCCcccccccc-C--ceEeecCCCcccHhhhcccCCCCCC
Q 003896 259 PAWEDLRSYLIAKGRKRFEVYVCTMAERDYALEMWRLLDPEGHLIGSKQLL-D--RVVCVKSGSRKSLLNVFQRGLCHPK 335 (788)
Q Consensus 259 PgweeLreFL~ak~sk~FElyVyTmgtR~YA~~IlrLLDPdgklF~~r~l~-~--RIisresg~~KsL~rLf~~g~~d~~ 335 (788)
+.+.+...+|. ..-+.+.|.|+..+.|+......++.. .+|..-... . .++.-+- +..-+..++...+.+++
T Consensus 123 ~~l~~a~~~L~---~~~~~~~iatn~~~~~~~~~~~~~g~g-~~~~~i~~~~~~~~~~~gKP-~p~~~~~~~~~~~~~~~ 197 (257)
T TIGR01458 123 QILNQAFRLLL---DGAKPLLIAIGKGRYYKRKDGLALDVG-PFVTALEYATDTKATVVGKP-SKTFFLEALRATGCEPE 197 (257)
T ss_pred HHHHHHHHHHH---cCCCCEEEEeCCCCCCcCCCCCCCCch-HHHHHHHHHhCCCceeecCC-CHHHHHHHHHHhCCChh
Confidence 55566667775 355678899999998886655444432 233200000 0 0000011 11112222221124688
Q ss_pred eEEEEeCCc--cccccCCC
Q 003896 336 MAMVIDDRC--KVWEDKDQ 352 (788)
Q Consensus 336 ~VVIIDDR~--dVW~~~~~ 352 (788)
.+++|.|+. |+-..+..
T Consensus 198 ~~~~vGD~~~~Di~~a~~~ 216 (257)
T TIGR01458 198 EAVMIGDDCRDDVGGAQDC 216 (257)
T ss_pred hEEEECCCcHHHHHHHHHc
Confidence 999998884 77766654
No 186
>smart00775 LNS2 LNS2 domain. This domain is found in Saccharomyces cerevisiae protein SMP2, proteins with an N-terminal lipin domain and phosphatidylinositol transfer proteins. SMP2 is involved in plasmid maintenance and respiration. Lipin proteins are involved in adipose tissue development and insulin resistance.
Probab=41.61 E-value=25 Score=34.69 Aligned_cols=18 Identities=17% Similarity=0.405 Sum_probs=14.1
Q ss_pred EEEEeCCcceeecccccc
Q 003896 139 AIVFDLDETLIVANTMKS 156 (788)
Q Consensus 139 ~lV~DLDeTLi~A~t~~~ 156 (788)
.+++|+|+||+...+...
T Consensus 1 iVisDIDGTL~~sd~~~~ 18 (157)
T smart00775 1 IVISDIDGTITKSDVLGH 18 (157)
T ss_pred CEEEecCCCCcccccccc
Confidence 378999999998875433
No 187
>COG2503 Predicted secreted acid phosphatase [General function prediction only]
Probab=39.82 E-value=13 Score=40.55 Aligned_cols=18 Identities=39% Similarity=0.484 Sum_probs=15.3
Q ss_pred ccceEEEEeCCcceeecc
Q 003896 135 LRCLAIVFDLDETLIVAN 152 (788)
Q Consensus 135 ~r~L~lV~DLDeTLi~A~ 152 (788)
.++-+||+|||||++.-+
T Consensus 77 ~K~~aVvlDlDETvLdNs 94 (274)
T COG2503 77 GKKKAVVLDLDETVLDNS 94 (274)
T ss_pred CCCceEEEecchHhhcCc
Confidence 456799999999999866
No 188
>PLN02382 probable sucrose-phosphatase
Probab=39.60 E-value=21 Score=40.63 Aligned_cols=19 Identities=37% Similarity=0.343 Sum_probs=15.9
Q ss_pred hhccceEEEEeCCcceeec
Q 003896 133 LNLRCLAIVFDLDETLIVA 151 (788)
Q Consensus 133 L~~r~L~lV~DLDeTLi~A 151 (788)
-...+|.||-||||||+..
T Consensus 5 ~~~~~~lI~sDLDGTLL~~ 23 (413)
T PLN02382 5 SGSPRLMIVSDLDHTMVDH 23 (413)
T ss_pred cCCCCEEEEEcCCCcCcCC
Confidence 3456899999999999965
No 189
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=38.27 E-value=35 Score=31.30 Aligned_cols=46 Identities=28% Similarity=0.411 Sum_probs=0.0
Q ss_pred EEEeCCcceeecccccchHHHHHHHHHHhhcC-------Cchhhh-hchhHHHHHh
Q 003896 140 IVFDLDETLIVANTMKSFEDRIEALRSWIARE-------PDQIRA-SGMSAELKRY 187 (788)
Q Consensus 140 lV~DLDeTLi~A~t~~~~e~ri~~l~~w~~~~-------~dP~~~-~~~~~E~kr~ 187 (788)
++|||||||++-.+. +..-.+++....... +|+.+. ..+.+.++++
T Consensus 1 ~l~D~dGvl~~g~~~--ipga~e~l~~L~~~g~~~~~lTNns~~s~~~~~~~L~~~ 54 (101)
T PF13344_consen 1 FLFDLDGVLYNGNEP--IPGAVEALDALRERGKPVVFLTNNSSRSREEYAKKLKKL 54 (101)
T ss_dssp EEEESTTTSEETTEE---TTHHHHHHHHHHTTSEEEEEES-SSS-HHHHHHHHHHT
T ss_pred CEEeCccEeEeCCCc--CcCHHHHHHHHHHcCCCEEEEeCCCCCCHHHHHHHHHhc
No 190
>TIGR01545 YfhB_g-proteo haloacid dehalogenase superfamily, subfamily IF hydrolase, YfhB. The gene name comes from the E. coli gene. There is currently no information regarding the function of this gene.
Probab=35.88 E-value=18 Score=37.08 Aligned_cols=38 Identities=13% Similarity=0.127 Sum_probs=29.2
Q ss_pred EEecCChHHHH-HHHHHhccccEEEEEEeCCchHHHHHHHHh
Q 003896 255 VRLRPAWEDLR-SYLIAKGRKRFEVYVCTMAERDYALEMWRL 295 (788)
Q Consensus 255 VKLRPgweeLr-eFL~ak~sk~FElyVyTmgtR~YA~~IlrL 295 (788)
++++|++.++. +.|+ ++-+.|.|.|++.+.|+..+++.
T Consensus 93 ~~l~pga~e~L~~~l~---~~G~~v~IvSas~~~~~~~ia~~ 131 (210)
T TIGR01545 93 VTAFPLVAERLRQYLE---SSDADIWLITGSPQPLVEAVYFD 131 (210)
T ss_pred CCCCccHHHHHHHHHH---hCCCEEEEEcCCcHHHHHHHHHh
Confidence 36789944444 2343 47899999999999999999976
No 191
>PRK10444 UMP phosphatase; Provisional
Probab=35.63 E-value=31 Score=36.42 Aligned_cols=29 Identities=21% Similarity=0.350 Sum_probs=20.9
Q ss_pred EEEEeCCcceeecccccchHHHHHHHHHHhh
Q 003896 139 AIVFDLDETLIVANTMKSFEDRIEALRSWIA 169 (788)
Q Consensus 139 ~lV~DLDeTLi~A~t~~~~e~ri~~l~~w~~ 169 (788)
.++|||||||+...+ .++.-+++++....
T Consensus 3 ~v~~DlDGtL~~~~~--~~p~a~~~l~~L~~ 31 (248)
T PRK10444 3 NVICDIDGVLMHDNV--AVPGAAEFLHRILD 31 (248)
T ss_pred EEEEeCCCceEeCCe--eCccHHHHHHHHHH
Confidence 578999999999974 36666666654443
No 192
>COG3882 FkbH Predicted enzyme involved in methoxymalonyl-ACP biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=33.33 E-value=24 Score=41.71 Aligned_cols=23 Identities=35% Similarity=0.281 Sum_probs=18.8
Q ss_pred HHhhhccceEEEEeCCcceeecc
Q 003896 130 LGMLNLRCLAIVFDLDETLIVAN 152 (788)
Q Consensus 130 ~~lL~~r~L~lV~DLDeTLi~A~ 152 (788)
..|-..++-|||+|||.||..-.
T Consensus 215 ~A~~g~~kK~LVLDLDNTLWGGV 237 (574)
T COG3882 215 AAMSGKSKKALVLDLDNTLWGGV 237 (574)
T ss_pred HHhhCcccceEEEecCCcccccc
Confidence 35667778899999999998765
No 193
>PRK14502 bifunctional mannosyl-3-phosphoglycerate synthase/mannosyl-3 phosphoglycerate phosphatase; Provisional
Probab=32.71 E-value=40 Score=41.25 Aligned_cols=36 Identities=31% Similarity=0.309 Sum_probs=24.7
Q ss_pred ccceEEEEeCCcceeecccccchHHHHHHHHHHhhcC
Q 003896 135 LRCLAIVFDLDETLIVANTMKSFEDRIEALRSWIARE 171 (788)
Q Consensus 135 ~r~L~lV~DLDeTLi~A~t~~~~e~ri~~l~~w~~~~ 171 (788)
+.+-.|++||||||+..... ..+..+++|+++....
T Consensus 414 ~~~KLIfsDLDGTLLd~d~~-i~~~t~eAL~~L~ekG 449 (694)
T PRK14502 414 QFKKIVYTDLDGTLLNPLTY-SYSTALDALRLLKDKE 449 (694)
T ss_pred ceeeEEEEECcCCCcCCCCc-cCHHHHHHHHHHHHcC
Confidence 34457889999999987542 2355677777766443
No 194
>PF02839 CBM_5_12: Carbohydrate binding domain; InterPro: IPR003610 A carbohydrate-binding module (CBM) is defined as a contiguous amino acid sequence within a carbohydrate-active enzyme with a discreet fold having carbohydrate-binding activity. A few exceptions are CBMs in cellulosomal scaffolding proteins and rare instances of independent putative CBMs. The requirement of CBMs existing as modules within larger enzymes sets this class of carbohydrate-binding protein apart from other non-catalytic sugar binding proteins such as lectins and sugar transport proteins. CBMs were previously classified as cellulose-binding domains (CBDs) based on the initial discovery of several modules that bound cellulose [, ]. However, additional modules in carbohydrate-active enzymes are continually being found that bind carbohydrates other than cellulose yet otherwise meet the CBM criteria, hence the need to reclassify these polypeptides using more inclusive terminology. Previous classification of cellulose-binding domains were based on amino acid similarity. Groupings of CBDs were called "Types" and numbered with roman numerals (e.g. Type I or Type II CBDs). In keeping with the glycoside hydrolase classification, these groupings are now called families and numbered with Arabic numerals. Families 1 to 13 are the same as Types I to XIII. For a detailed review on the structure and binding modes of CBMs see []. This entry represents CBM5 from CAZY and CBM12 from CAZY. These modules have a core structure consisting of a 3-stranded meander beta-sheet, which contain six aromatic groups that may be important for binding. CBM5/12 is found in proteins such as chitinase A1, chitinase B [], and endoglucanase Z []. The overall topology of the CBM is structurally similar to the C-terminal chitin-binding domains (ChBD) of chitinase A1 and chitinase B, however the binding mechanism for the ChBD may be different from that of the CBM [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process, 0005576 extracellular region; PDB: 1ED7_A 1W1V_A 1E15_B 1UR8_A 1E6Z_B 1E6P_A 1W1T_A 1W1P_B 1UR9_A 1E6R_A ....
Probab=32.38 E-value=31 Score=26.59 Aligned_cols=21 Identities=29% Similarity=0.428 Sum_probs=15.8
Q ss_pred hhhccceeeeCCeEEEecccc
Q 003896 196 QYTENDCVMDNGKVFKVQQEE 216 (788)
Q Consensus 196 q~~~~d~V~~nG~~~~~q~E~ 216 (788)
.|..+|.|+.||++|+++.-.
T Consensus 9 ~Y~~Gd~V~~~g~~y~a~~~~ 29 (41)
T PF02839_consen 9 TYNAGDRVSYNGKLYQAKWWT 29 (41)
T ss_dssp EE-TT-EEEETTEEEEESSSC
T ss_pred EEcCCCEEEECCCEEEEeecc
Confidence 577899999999999986543
No 195
>PF08645 PNK3P: Polynucleotide kinase 3 phosphatase; InterPro: IPR013954 Polynucleotide kinase 3 phosphatases play a role in the repair of single breaks in DNA induced by DNA-damaging agents such as gamma radiation and camptothecin []. ; PDB: 2FPW_A 2FPR_A 2FPX_A 2FPS_A 2FPU_B 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B 3U7G_A ....
Probab=32.17 E-value=26 Score=34.69 Aligned_cols=17 Identities=47% Similarity=0.579 Sum_probs=11.9
Q ss_pred EEEEeCCcceeeccccc
Q 003896 139 AIVFDLDETLIVANTMK 155 (788)
Q Consensus 139 ~lV~DLDeTLi~A~t~~ 155 (788)
.+.||||+|||......
T Consensus 2 ia~fD~DgTLi~~~s~~ 18 (159)
T PF08645_consen 2 IAFFDLDGTLIKTKSGK 18 (159)
T ss_dssp EEEE-SCTTTEE-STST
T ss_pred EEEEeCCCCccCCCCCC
Confidence 35799999999987654
No 196
>TIGR01452 PGP_euk phosphoglycolate/pyridoxal phosphate phosphatase family. This model is closely related to a family of bacterial sequences including the E. coli NagD and B. subtilus AraL genes which are characterized by the ability to hydrolyze para-nitrophenylphosphate (pNPPases or NPPases). The chlamydomonas PGPase does not catalyze this reaction and so presumably these two groups have different functions and substrate specificities. Many of the genes in this alignment have been annotated as pNPPases due to this association.
Probab=32.17 E-value=34 Score=36.20 Aligned_cols=29 Identities=21% Similarity=0.268 Sum_probs=21.0
Q ss_pred EEEEeCCcceeecccccchHHHHHHHHHHhh
Q 003896 139 AIVFDLDETLIVANTMKSFEDRIEALRSWIA 169 (788)
Q Consensus 139 ~lV~DLDeTLi~A~t~~~~e~ri~~l~~w~~ 169 (788)
+++||+||||+.... .++.-.++|+.+..
T Consensus 4 ~~~~D~DGtl~~~~~--~~~ga~e~l~~L~~ 32 (279)
T TIGR01452 4 GFIFDCDGVLWLGER--VVPGAPELLDRLAR 32 (279)
T ss_pred EEEEeCCCceEcCCe--eCcCHHHHHHHHHH
Confidence 688999999998764 46655666665543
No 197
>KOG3792 consensus Transcription factor NFAT, subunit NF90 [General function prediction only]
Probab=30.66 E-value=23 Score=43.19 Aligned_cols=51 Identities=24% Similarity=0.316 Sum_probs=43.7
Q ss_pred CCceEE------EEeeeC--CCceEEEEEEECCeEeEEEecCCHHHHHHHHHHHHHHHHH
Q 003896 640 SKVEFR------SVVSTS--KDLQFSVEVLFTGEKIGVGMGKTRKDAQQQAAENALHYLA 691 (788)
Q Consensus 640 ~~peYe------lveesG--H~~~FtveV~I~Gkk~G~G~GsSKKEAEQ~AAK~AL~~L~ 691 (788)
..+.|+ ++...+ |.++|+++|.++|..+ +..|.|||.|+..||++-|+...
T Consensus 384 hrLQYk~kv~p~Lvv~t~P~~~~~~t~e~r~~~~~~-~a~gps~~~~~wh~~~k~lq~~~ 442 (816)
T KOG3792|consen 384 HRLQYKQKVDPDLVVDTKPSHRPRRTMEVRVNGLPA-EAEGPSKKTAKWHAARKRLQNEG 442 (816)
T ss_pred ccceeccccCCCceeccCCcccchhhhhhhhcCCcc-ccCCcccccchHHHHHHHhhccC
Confidence 346787 777777 9999999999999876 78899999999999999887664
No 198
>KOG2914 consensus Predicted haloacid-halidohydrolase and related hydrolases [General function prediction only]
Probab=30.11 E-value=1.9e+02 Score=30.78 Aligned_cols=80 Identities=20% Similarity=0.038 Sum_probs=47.1
Q ss_pred EEEecCChHHHHHHHHHhccccEEEEEEeCCchHHHHHHHHh-hCCCCCccccccccCceEee-----cCC------Ccc
Q 003896 254 LVRLRPAWEDLRSYLIAKGRKRFEVYVCTMAERDYALEMWRL-LDPEGHLIGSKQLLDRVVCV-----KSG------SRK 321 (788)
Q Consensus 254 ~VKLRPgweeLreFL~ak~sk~FElyVyTmgtR~YA~~IlrL-LDPdgklF~~r~l~~RIisr-----esg------~~K 321 (788)
-+++=||.+.|..-|. ...=-+-++|.+++.++....+- -+.- ..| ..+++- +.| ..+
T Consensus 90 ~~~~~PGa~kLv~~L~---~~gip~alat~s~~~~~~~k~~~~~~~~-~~f------~~~v~~d~~~v~~gKP~Pdi~l~ 159 (222)
T KOG2914|consen 90 NSILMPGAEKLVNHLK---NNGIPVALATSSTSASFELKISRHEDIF-KNF------SHVVLGDDPEVKNGKPDPDIYLK 159 (222)
T ss_pred ccccCCcHHHHHHHHH---hCCCCeeEEecCCcccHHHHHHHhhHHH-Hhc------CCCeecCCccccCCCCCchHHHH
Confidence 3455589777777775 55677889999977776665553 3333 223 345552 112 134
Q ss_pred cHhhhcccCCCCCCeEEEEeCCccc
Q 003896 322 SLLNVFQRGLCHPKMAMVIDDRCKV 346 (788)
Q Consensus 322 sL~rLf~~g~~d~~~VVIIDDR~dV 346 (788)
.++++-.. .++.+|+.+|.+.-
T Consensus 160 A~~~l~~~---~~~k~lVfeds~~G 181 (222)
T KOG2914|consen 160 AAKRLGVP---PPSKCLVFEDSPVG 181 (222)
T ss_pred HHHhcCCC---CccceEEECCCHHH
Confidence 45544331 13888888888663
No 199
>cd00789 KU_like Ku-core domain, Ku-like subfamily; composed of prokaryotic homologs of the eukaryotic DNA binding protein Ku. The alignment includes the core domain shared by the prokaryotic YkoV-like proteins and the eukaryotic Ku70 and Ku80. The prokaryotic Ku homologs are predicted to form homodimers. It is proposed that the Ku homologs are functionally associated with ATP-dependent DNA ligase and the eukaryotic-type primase, probably as components of a double-strand break repair system.
Probab=27.88 E-value=1.6e+02 Score=31.80 Aligned_cols=78 Identities=14% Similarity=0.081 Sum_probs=55.8
Q ss_pred CCCCceEEeeecCCCCCCCcchhhhhcccCceeeecCCCCCCCchhHHHHHHHhhcccccEEEEe--CCeeEEEEecCCC
Q 003896 32 FPNNEIRIRHISPSSERCIPLSILHTISSFSLRCKLESSAPVEQPHLINLHASCFYEFKTAVVVI--GDEEIHLVAMPSK 109 (788)
Q Consensus 32 ~~~~~i~i~~~~~~~e~~~pl~~lh~~~~~~~~~~~~~~~~~~~~~l~~lh~~~~~e~ktaVv~~--~~~elhLva~~~~ 109 (788)
+....|.|.+|-+.++-. | +|+ .. +.-...+. ....++..|+..|.+.+|.||++. .+.+ ||+|+-+.
T Consensus 84 ~~~~~i~IlgFv~~~~I~-~---~y~-~~-syyl~P~~---~~~kaf~~L~~Al~~~~kvaIar~V~r~~~-~l~aL~P~ 153 (256)
T cd00789 84 ESTRTIEIVDFVPLDEID-P---IYF-DK-PYYLAPDK---GGEKAYALLREALRDTGKVAIAKVVLRTRE-RLAALRPR 153 (256)
T ss_pred CCCCeEEEEeEeCHHHCC-H---hHc-CC-CEEEecCC---CcchHHHHHHHHHHHcCCEEEEEEEEcCCc-eEEEEEEC
Confidence 457899999999987655 3 233 22 22222232 346799999999999999999998 4455 89997543
Q ss_pred CCCCceEeeeecC
Q 003896 110 QKKFPCFWCYSVS 122 (788)
Q Consensus 110 ~~~~p~F~~~~~~ 122 (788)
. .|||...+|
T Consensus 154 ~---~gL~l~~Lp 163 (256)
T cd00789 154 G---KGLVLNTLR 163 (256)
T ss_pred C---CEEEEEECC
Confidence 3 589988888
No 200
>TIGR00213 GmhB_yaeD D,D-heptose 1,7-bisphosphate phosphatase. This family of proteins formerly designated yaeD resembles the histidinol phosphatase domain of the bifunctional protein HisB. The member from E. coli has been characterized as D,D-heptose 1,7-bisphosphate phosphatase, GmhB, involved in inner core LPS assembly (PubMed:11751812).
Probab=23.79 E-value=73 Score=31.30 Aligned_cols=12 Identities=42% Similarity=0.570 Sum_probs=10.4
Q ss_pred EEEEeCCcceee
Q 003896 139 AIVFDLDETLIV 150 (788)
Q Consensus 139 ~lV~DLDeTLi~ 150 (788)
++.||+|+||+.
T Consensus 3 ~~~~D~Dgtl~~ 14 (176)
T TIGR00213 3 AIFLDRDGTINI 14 (176)
T ss_pred EEEEeCCCCEeC
Confidence 577899999995
No 201
>PF00333 Ribosomal_S5: Ribosomal protein S5, N-terminal domain; InterPro: IPR013810 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein S5 is one of the proteins from the small ribosomal subunit, and is a protein of 166 to 254 amino-acid residues. In Escherichia coli, S5 is known to be important in the assembly and function of the 30S ribosomal subunit. Mutations in S5 have been shown to increase translational error frequencies. It belongs to a family of ribosomal proteins which, on the basis of sequence similarities [, ], groups bacterial, cyanelle, red algal chloroplast, archaeal and fungal mitochondrial S5; mammalian, Caenorhabditis elegans, Drosophila and plant S2; and yeast S4 (SUP44). This entry represents the N-terminal domain of ribosomal protein S5, which has an alpha-beta(3)-alpha structure that folds into two layers, alpha/beta.; GO: 0003723 RNA binding, 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2ZKQ_e 2XZN_E 2XZM_E 3O30_B 1S1H_E 3IZB_E 3U5C_C 3U5G_C 3O2Z_B 3BBN_E ....
Probab=23.70 E-value=77 Score=27.87 Aligned_cols=39 Identities=28% Similarity=0.335 Sum_probs=28.6
Q ss_pred CCceEEEEEEECCe--E--eEEEecCCHHHHHHHHHHHHHHHH
Q 003896 652 KDLQFSVEVLFTGE--K--IGVGMGKTRKDAQQQAAENALHYL 690 (788)
Q Consensus 652 H~~~FtveV~I~Gk--k--~G~G~GsSKKEAEQ~AAK~AL~~L 690 (788)
....|++-|.+++. . +|.|.+..-..|-++|-+.|.++|
T Consensus 20 r~~~~~alvvvGn~~G~vG~G~gKa~~~~~Ai~kA~~~A~knl 62 (67)
T PF00333_consen 20 RIFSFRALVVVGNGNGLVGFGVGKAKEVPDAIRKAKRKAKKNL 62 (67)
T ss_dssp EEEEEEEEEEEECSSSEEEEEEEEESSHHHHHHHHHHHHHCSE
T ss_pred ceeEEEEEEEEecCCCcEecCcccchhHHHHHHHHHHHHHhCC
Confidence 55667888888543 2 566667788899999998887654
No 202
>PTZ00445 p36-lilke protein; Provisional
Probab=23.48 E-value=1.1e+02 Score=32.90 Aligned_cols=103 Identities=19% Similarity=0.206 Sum_probs=67.0
Q ss_pred CCCcceee-----ecCCCCCCceEEEEecCChHHHHHHHHHhc-cccEEEEEEeCCchHH-----------HHHHHH-hh
Q 003896 235 PERNLVLT-----RINPENRDTSVLVRLRPAWEDLRSYLIAKG-RKRFEVYVCTMAERDY-----------ALEMWR-LL 296 (788)
Q Consensus 235 ~~~n~~lt-----rI~P~~r~t~y~VKLRPgweeLreFL~ak~-sk~FElyVyTmgtR~Y-----------A~~Ilr-LL 296 (788)
.-.|.+++ +++|.+....+..++||. +..++. ++ ...+-|.|-|.+.... +.+|++ .|
T Consensus 49 D~DnTlI~~HsgG~~~~~~~~~~~~~~~tpe---fk~~~~-~l~~~~I~v~VVTfSd~~~~~~~~~~~~Isg~~li~~~l 124 (219)
T PTZ00445 49 DFDLTMITKHSGGYIDPDNDDIRVLTSVTPD---FKILGK-RLKNSNIKISVVTFSDKELIPSENRPRYISGDRMVEAAL 124 (219)
T ss_pred cchhhhhhhhcccccCCCcchhhhhccCCHH---HHHHHH-HHHHCCCeEEEEEccchhhccccCCcceechHHHHHHHH
Confidence 33456666 888887777889999999 777887 55 4689999999998865 344444 35
Q ss_pred CCCCCccccccccCceEeec------------------CCCcccH--hhhcccCCCCCCeEEEEeCCcc
Q 003896 297 DPEGHLIGSKQLLDRVVCVK------------------SGSRKSL--LNVFQRGLCHPKMAMVIDDRCK 345 (788)
Q Consensus 297 DPdgklF~~r~l~~RIisre------------------sg~~KsL--~rLf~~g~~d~~~VVIIDDR~d 345 (788)
+-.+-=|.. .++.|.. +...|.- ++++..-++.++.+++|||+..
T Consensus 125 k~s~~~~~i----~~~~~yyp~~w~~p~~y~~~gl~KPdp~iK~yHle~ll~~~gl~peE~LFIDD~~~ 189 (219)
T PTZ00445 125 KKSKCDFKI----KKVYAYYPKFWQEPSDYRPLGLDAPMPLDKSYHLKQVCSDFNVNPDEILFIDDDMN 189 (219)
T ss_pred HhcCcccee----eeeeeeCCcccCChhhhhhhcccCCCccchHHHHHHHHHHcCCCHHHeEeecCCHH
Confidence 432211111 2333331 1124444 7787765678999999999854
No 203
>cd00036 ChtBD3 Chitin/cellulose binding domain. Putative carbohydrate binding domain found in many different glycosyl hydrolase enzymes. May occur in tandem arrangements.
Probab=22.98 E-value=60 Score=24.96 Aligned_cols=19 Identities=47% Similarity=0.629 Sum_probs=16.6
Q ss_pred hhhccceeeeCCeEEEecc
Q 003896 196 QYTENDCVMDNGKVFKVQQ 214 (788)
Q Consensus 196 q~~~~d~V~~nG~~~~~q~ 214 (788)
.|..+|.|+.||+.|.++-
T Consensus 7 ~Y~~Gd~V~~~g~~y~a~w 25 (41)
T cd00036 7 VYTAGDLVSYNGKVYKAKW 25 (41)
T ss_pred EecCCCEEEECCeEEEEee
Confidence 4778999999999999965
No 204
>PRK08942 D,D-heptose 1,7-bisphosphate phosphatase; Validated
Probab=22.58 E-value=47 Score=32.63 Aligned_cols=14 Identities=36% Similarity=0.451 Sum_probs=11.1
Q ss_pred EEEEeCCcceeecc
Q 003896 139 AIVFDLDETLIVAN 152 (788)
Q Consensus 139 ~lV~DLDeTLi~A~ 152 (788)
+|.||+|+||+...
T Consensus 5 ~~~~d~~~t~~~~~ 18 (181)
T PRK08942 5 AIFLDRDGVINVDS 18 (181)
T ss_pred EEEEECCCCcccCC
Confidence 68899999985543
No 205
>TIGR01545 YfhB_g-proteo haloacid dehalogenase superfamily, subfamily IF hydrolase, YfhB. The gene name comes from the E. coli gene. There is currently no information regarding the function of this gene.
Probab=22.23 E-value=1.1e+02 Score=31.60 Aligned_cols=19 Identities=47% Similarity=0.646 Sum_probs=15.5
Q ss_pred EEEEeCCcceeecccccch
Q 003896 139 AIVFDLDETLIVANTMKSF 157 (788)
Q Consensus 139 ~lV~DLDeTLi~A~t~~~~ 157 (788)
..+||+||||+.-.|+..|
T Consensus 7 la~FDfDgTLt~~ds~~~f 25 (210)
T TIGR01545 7 IIFFDLDGTLHQQDMFGSF 25 (210)
T ss_pred EEEEcCCCCCccCccHHHH
Confidence 4789999999999876543
No 206
>COG0647 NagD Predicted sugar phosphatases of the HAD superfamily [Carbohydrate transport and metabolism]
Probab=21.78 E-value=94 Score=33.94 Aligned_cols=40 Identities=28% Similarity=0.346 Sum_probs=27.5
Q ss_pred ceEEEEeCCcceeecccccchHHHHHHHHHHhhcC-------Cchhhhh
Q 003896 137 CLAIVFDLDETLIVANTMKSFEDRIEALRSWIARE-------PDQIRAS 178 (788)
Q Consensus 137 ~L~lV~DLDeTLi~A~t~~~~e~ri~~l~~w~~~~-------~dP~~~~ 178 (788)
.=++.|||||||++-++ .|.-=.++|..+.... +||.+..
T Consensus 8 y~~~l~DlDGvl~~G~~--~ipga~e~l~~L~~~g~~~iflTNn~~~s~ 54 (269)
T COG0647 8 YDGFLFDLDGVLYRGNE--AIPGAAEALKRLKAAGKPVIFLTNNSTRSR 54 (269)
T ss_pred cCEEEEcCcCceEeCCc--cCchHHHHHHHHHHcCCeEEEEeCCCCCCH
Confidence 34688999999998875 3666666666655553 5666643
No 207
>PF09419 PGP_phosphatase: Mitochondrial PGP phosphatase; InterPro: IPR010021 This group of hypothetical proteins is a part of the IIIA subfamily of the haloacid dehalogenase (HAD) superfamily of hydrolases. All characterised members of this subfamily and most characterised members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs [], all of which are found conserved here. This family consists of sequences from fungi, plants, cyanobacteria, Gram-positive bacteria and Deinococcus. There is presently no characterisation of any sequence in this family.
Probab=21.68 E-value=76 Score=32.41 Aligned_cols=21 Identities=29% Similarity=0.286 Sum_probs=15.9
Q ss_pred hccceEEEEeCCcceeecccc
Q 003896 134 NLRCLAIVFDLDETLIVANTM 154 (788)
Q Consensus 134 ~~r~L~lV~DLDeTLi~A~t~ 154 (788)
..--=+||||+|.||+.-...
T Consensus 38 ~~Gik~li~DkDNTL~~~~~~ 58 (168)
T PF09419_consen 38 KKGIKALIFDKDNTLTPPYED 58 (168)
T ss_pred hcCceEEEEcCCCCCCCCCcC
Confidence 334468999999999876654
No 208
>KOG4334 consensus Uncharacterized conserved protein, contains double-stranded RNA-binding motif and WW domain [General function prediction only]
Probab=20.19 E-value=2.4e+02 Score=33.78 Aligned_cols=61 Identities=13% Similarity=0.168 Sum_probs=44.0
Q ss_pred hHHHHHHHHHhC-CC-C--ceEEEEeeeC-CCceEEEEEEECCeEeEEEecCCHHHHHHHHHHHHHHHHH
Q 003896 627 SIGVLQEIGKRC-SS-K--VEFRSVVSTS-KDLQFSVEVLFTGEKIGVGMGKTRKDAQQQAAENALHYLA 691 (788)
Q Consensus 627 yKS~LQE~~QK~-~~-~--peYelveesG-H~~~FtveV~I~Gkk~G~G~GsSKKEAEQ~AAK~AL~~L~ 691 (788)
+-.+|.+-.+++ +. . +.++++. .| ....|++. -|+.-.+|+.++||+++|.|....|++|.
T Consensus 492 Py~iL~~cl~Rn~g~~d~~ik~E~i~-~~nqkse~im~---~Gkht~~~~cknkr~gkQlASQ~ilq~lH 557 (650)
T KOG4334|consen 492 PYNILRDCLSRNLGWNDLVIKKEMIG-NGNQKSEVIMI---LGKHTEEAECKNKRQGKQLASQRILQKLH 557 (650)
T ss_pred HHHHHHHHHHhhcCCcceeeeeeccC-CCCccceeEee---eccceeeeeeechhHHHHHHHHHHHHHhC
Confidence 457888888887 32 2 4455532 23 44456543 47778899999999999999999999885
No 209
>PLN02645 phosphoglycolate phosphatase
Probab=20.02 E-value=83 Score=34.13 Aligned_cols=33 Identities=18% Similarity=0.279 Sum_probs=21.8
Q ss_pred HhhhccceEEEEeCCcceeecccccchHHHHHHHHH
Q 003896 131 GMLNLRCLAIVFDLDETLIVANTMKSFEDRIEALRS 166 (788)
Q Consensus 131 ~lL~~r~L~lV~DLDeTLi~A~t~~~~e~ri~~l~~ 166 (788)
.+++. -=+++||+||||+.... .++.-.++|+.
T Consensus 23 ~~~~~-~~~~~~D~DGtl~~~~~--~~~ga~e~l~~ 55 (311)
T PLN02645 23 ELIDS-VETFIFDCDGVIWKGDK--LIEGVPETLDM 55 (311)
T ss_pred HHHHh-CCEEEEeCcCCeEeCCc--cCcCHHHHHHH
Confidence 44432 23789999999999764 35555555544
Done!