Query 003898
Match_columns 788
No_of_seqs 70 out of 72
Neff 3.1
Searched_HMMs 29240
Date Mon Mar 25 07:39:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003898.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003898hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2crg_A Metastasis associated p 98.7 5.5E-09 1.9E-13 88.1 4.2 56 48-104 5-61 (70)
2 2yqk_A Arginine-glutamic acid 98.7 2.2E-08 7.5E-13 82.7 5.2 52 47-99 5-57 (63)
3 2eqr_A N-COR1, N-COR, nuclear 98.6 3.7E-08 1.3E-12 80.5 6.3 51 45-95 6-56 (61)
4 2iw5_B Protein corest, REST co 98.4 1.9E-07 6.7E-12 94.6 5.3 54 45-98 127-180 (235)
5 4a69_C Nuclear receptor corepr 98.1 2.2E-06 7.4E-11 76.0 4.9 47 49-95 41-87 (94)
6 2xag_B REST corepressor 1; ami 98.0 2.6E-06 8.8E-11 93.9 5.2 52 46-97 375-426 (482)
7 2cu7_A KIAA1915 protein; nucle 98.0 1E-05 3.5E-10 67.6 6.8 53 50-102 8-60 (72)
8 2yus_A SWI/SNF-related matrix- 97.7 3E-05 1E-09 66.8 5.2 51 45-95 12-62 (79)
9 2yum_A ZZZ3 protein, zinc fing 97.7 3.1E-05 1.1E-09 64.8 5.1 53 47-99 4-62 (75)
10 2ltp_A Nuclear receptor corepr 96.6 1.6E-05 5.4E-10 69.4 0.0 50 50-99 15-64 (89)
11 1x41_A Transcriptional adaptor 97.4 0.00022 7.6E-09 57.7 5.9 46 51-96 8-54 (60)
12 2cqr_A RSGI RUH-043, DNAJ homo 97.3 0.0001 3.4E-09 63.0 2.9 57 43-99 10-70 (73)
13 2k9n_A MYB24; R2R3 domain, DNA 97.3 0.0005 1.7E-08 60.9 7.2 54 51-104 53-106 (107)
14 2elk_A SPCC24B10.08C protein; 97.2 0.00035 1.2E-08 56.4 5.3 45 52-96 10-56 (58)
15 2xag_B REST corepressor 1; ami 97.2 5.9E-05 2E-09 83.3 0.0 51 50-101 188-238 (482)
16 1guu_A C-MYB, MYB proto-oncoge 97.1 0.00073 2.5E-08 52.8 5.2 45 52-96 4-49 (52)
17 2d9a_A B-MYB, MYB-related prot 97.0 0.00098 3.3E-08 53.6 5.6 46 50-95 7-53 (60)
18 2dim_A Cell division cycle 5-l 96.9 0.002 6.9E-08 53.3 7.1 56 52-114 10-66 (70)
19 3osg_A MYB21; transcription-DN 96.9 0.0035 1.2E-07 57.1 9.0 80 50-140 10-89 (126)
20 2k9n_A MYB24; R2R3 domain, DNA 96.9 0.0062 2.1E-07 53.9 10.3 76 52-138 2-78 (107)
21 2din_A Cell division cycle 5-l 96.8 0.0029 1E-07 51.8 7.1 50 51-101 9-58 (66)
22 1gv2_A C-MYB, MYB proto-oncoge 96.8 0.00081 2.8E-08 58.9 4.0 49 50-98 55-103 (105)
23 2cjj_A Radialis; plant develop 96.8 0.0018 6E-08 57.7 6.1 50 52-101 9-62 (93)
24 1ity_A TRF1; helix-turn-helix, 96.8 0.0026 8.7E-08 52.6 6.4 54 44-97 3-59 (69)
25 3osg_A MYB21; transcription-DN 96.7 0.0015 5E-08 59.6 5.3 50 51-100 62-111 (126)
26 1gvd_A MYB proto-oncogene prot 96.7 0.0015 5.1E-08 51.1 4.5 44 52-95 4-48 (52)
27 1gv2_A C-MYB, MYB proto-oncoge 96.6 0.0058 2E-07 53.5 8.1 77 52-139 5-82 (105)
28 1wgx_A KIAA1903 protein; MYB D 96.6 0.0023 7.9E-08 55.1 5.3 44 52-95 9-56 (73)
29 1h8a_C AMV V-MYB, MYB transfor 96.6 0.0088 3E-07 54.3 9.3 78 51-139 27-105 (128)
30 1h8a_C AMV V-MYB, MYB transfor 96.3 0.0016 5.5E-08 59.1 2.5 49 50-98 78-126 (128)
31 2cqq_A RSGI RUH-037, DNAJ homo 96.0 0.0074 2.5E-07 51.4 4.9 45 52-97 9-57 (72)
32 2llk_A Cyclin-D-binding MYB-li 95.8 0.013 4.5E-07 50.1 5.9 43 52-95 24-66 (73)
33 1h89_C C-MYB, MYB proto-oncoge 95.8 0.034 1.1E-06 52.1 9.0 78 50-138 57-135 (159)
34 1h89_C C-MYB, MYB proto-oncoge 95.6 0.0044 1.5E-07 58.1 2.4 49 50-98 109-157 (159)
35 1w0t_A Telomeric repeat bindin 95.6 0.016 5.5E-07 45.6 5.3 46 52-97 3-51 (53)
36 3zqc_A MYB3; transcription-DNA 95.5 0.0072 2.4E-07 55.3 3.1 48 52-99 55-102 (131)
37 3zqc_A MYB3; transcription-DNA 95.2 0.024 8.4E-07 51.8 5.8 78 52-140 3-81 (131)
38 3sjm_A Telomeric repeat-bindin 95.1 0.036 1.2E-06 45.9 5.8 46 52-97 12-60 (64)
39 4eef_G F-HB80.4, designed hema 94.4 0.0034 1.2E-07 54.5 -1.9 42 52-93 21-66 (74)
40 2juh_A Telomere binding protei 94.3 0.27 9.1E-06 45.9 10.3 63 43-107 9-76 (121)
41 2roh_A RTBP1, telomere binding 94.1 0.44 1.5E-05 44.5 11.2 72 43-116 23-99 (122)
42 2ckx_A NGTRF1, telomere bindin 93.8 0.18 6E-06 44.0 7.6 73 53-126 2-81 (83)
43 2aje_A Telomere repeat-binding 93.6 0.13 4.3E-06 46.9 6.5 56 43-98 5-65 (105)
44 1ofc_X ISWI protein; nuclear p 91.5 0.14 4.6E-06 54.1 4.4 51 51-101 110-161 (304)
45 3hm5_A DNA methyltransferase 1 89.6 0.61 2.1E-05 41.9 6.2 52 52-103 31-87 (93)
46 4b4c_A Chromodomain-helicase-D 89.6 0.42 1.4E-05 46.1 5.6 58 48-105 4-66 (211)
47 1x58_A Hypothetical protein 49 87.9 0.31 1.1E-05 41.1 3.0 51 49-99 6-59 (62)
48 4iej_A DNA methyltransferase 1 87.4 1.1 3.8E-05 40.3 6.4 54 52-105 31-89 (93)
49 1ug2_A 2610100B20RIK gene prod 86.2 3.7 0.00013 37.2 9.1 60 44-103 26-88 (95)
50 2y9y_A Imitation switch protei 80.9 0.8 2.7E-05 49.7 3.1 51 51-101 123-175 (374)
51 1ign_A Protein (RAP1); RAP1,ye 76.1 1.1 3.9E-05 46.2 2.4 48 51-98 8-61 (246)
52 1irz_A ARR10-B; helix-turn-hel 65.9 9.1 0.00031 32.3 5.2 42 49-90 5-51 (64)
53 2o8x_A Probable RNA polymerase 32.1 85 0.0029 24.0 5.5 53 51-105 13-65 (70)
54 2xb0_X Chromo domain-containin 30.5 63 0.0022 33.6 5.7 53 52-104 4-61 (270)
55 3mzy_A RNA polymerase sigma-H 27.9 94 0.0032 26.8 5.6 49 54-105 110-158 (164)
56 2ebi_A DNA binding protein GT- 25.4 1.4E+02 0.0047 25.1 6.0 22 51-72 4-25 (86)
57 2hzd_A Transcriptional enhance 23.0 33 0.0011 30.3 1.7 47 316-369 27-78 (82)
58 3fap_B FRAP, FKBP12-rapamycin 21.7 1.1E+02 0.0037 27.3 4.8 29 72-100 63-94 (94)
59 1x3u_A Transcriptional regulat 21.3 1.3E+02 0.0043 23.8 4.7 46 52-100 15-60 (79)
60 2lr8_A CAsp8-associated protei 26.5 20 0.0007 31.0 0.0 46 51-97 14-62 (70)
61 2npu_A FKBP12-rapamycin comple 20.5 1.2E+02 0.0042 28.4 5.1 26 76-101 97-125 (126)
No 1
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=98.74 E-value=5.5e-09 Score=88.08 Aligned_cols=56 Identities=23% Similarity=0.463 Sum_probs=50.6
Q ss_pred cccccccCHHHHHHHHHHHHHhcccHHHHHH-HhhhcchhhHHHHHHHHHHHHHhhcC
Q 003898 48 TRQWAAWTREEEESFFTALRQVGKNFEKITH-RVRSKNKDQVRHYYYRLVRRMNKLLG 104 (788)
Q Consensus 48 ~R~w~~Ws~eEkn~FFeaL~e~GKdFEaI~~-~i~~KnKdQVRhFYYrt~~rI~k~L~ 104 (788)
+.....||.+|...|-+||..|||||-.|+. +|.+|+..||.+||| .|+|...+..
T Consensus 5 r~~~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY-~wKkt~~y~q 61 (70)
T 2crg_A 5 SSGMEEWSASEACLFEEALEKYGKDFNDIRQDFLPWKSLTSIIEYYY-MWKTTDRYVQ 61 (70)
T ss_dssp CCSSCCCCHHHHHHHHHHHHHTCSCHHHHHHTTCSSSCHHHHHHHHH-HHHTCCSSCS
T ss_pred ccCCCCCCHHHHHHHHHHHHHhCccHHHHHHHHcCCCCHHHHHHHHH-hhcCCchHHH
Confidence 4567899999999999999999999999999 799999999999999 7998776543
No 2
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.65 E-value=2.2e-08 Score=82.70 Aligned_cols=52 Identities=29% Similarity=0.556 Sum_probs=45.9
Q ss_pred CcccccccCHHHHHHHHHHHHHhcccHHHHHH-HhhhcchhhHHHHHHHHHHHH
Q 003898 47 PTRQWAAWTREEEESFFTALRQVGKNFEKITH-RVRSKNKDQVRHYYYRLVRRM 99 (788)
Q Consensus 47 ~~R~w~~Ws~eEkn~FFeaL~e~GKdFEaI~~-~i~~KnKdQVRhFYYrt~~rI 99 (788)
|+.....||.+|...|-+||..|||||-.|+. +|.+|+..||.+||| .|+|-
T Consensus 5 p~~~~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY-~wKkt 57 (63)
T 2yqk_A 5 SSGIEKCWTEDEVKRFVKGLRQYGKNFFRIRKELLPNKETGELITFYY-YWKKT 57 (63)
T ss_dssp CCCCCCSCCHHHHHHHHHHHHHTCSCHHHHHHHSCTTSCHHHHHHHHH-HHHCS
T ss_pred CCcCCCCcCHHHHHHHHHHHHHhCccHHHHHHHHcCCCcHHHHHHHHh-cccCC
Confidence 44445899999999999999999999999998 699999999999999 46643
No 3
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.64 E-value=3.7e-08 Score=80.54 Aligned_cols=51 Identities=27% Similarity=0.365 Sum_probs=46.7
Q ss_pred CCCcccccccCHHHHHHHHHHHHHhcccHHHHHHHhhhcchhhHHHHHHHH
Q 003898 45 KRPTRQWAAWTREEEESFFTALRQVGKNFEKITHRVRSKNKDQVRHYYYRL 95 (788)
Q Consensus 45 kk~~R~w~~Ws~eEkn~FFeaL~e~GKdFEaI~~~i~~KnKdQVRhFYYrt 95 (788)
.+.+.....||.+|...|-++|..|||+|..|+.+|..|+..||+.|||..
T Consensus 6 ~~~r~~~~~WT~eE~~~F~~~~~~~gk~w~~Ia~~l~~rt~~~~v~~Yy~~ 56 (61)
T 2eqr_A 6 SGDRQFMNVWTDHEKEIFKDKFIQHPKNFGLIASYLERKSVPDCVLYYYLT 56 (61)
T ss_dssp CCCCSCCCSCCHHHHHHHHHHHHHSTTCHHHHHHHCTTSCHHHHHHHHHHH
T ss_pred ccccccCCCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHh
Confidence 345566699999999999999999999999999999999999999999975
No 4
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=98.39 E-value=1.9e-07 Score=94.65 Aligned_cols=54 Identities=28% Similarity=0.474 Sum_probs=48.9
Q ss_pred CCCcccccccCHHHHHHHHHHHHHhcccHHHHHHHhhhcchhhHHHHHHHHHHH
Q 003898 45 KRPTRQWAAWTREEEESFFTALRQVGKNFEKITHRVRSKNKDQVRHYYYRLVRR 98 (788)
Q Consensus 45 kk~~R~w~~Ws~eEkn~FFeaL~e~GKdFEaI~~~i~~KnKdQVRhFYYrt~~r 98 (788)
...++....||.+|...|.+||+.|||||.+|+.+|.+|+..|||.|||..-+|
T Consensus 127 e~~~k~s~~WTeEE~~lFleAl~kYGKDW~~IAk~VgTKT~~QcKnfY~~~kKR 180 (235)
T 2iw5_B 127 EVIQKCNARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRR 180 (235)
T ss_dssp CCCCCCCSSCCHHHHHHHHHHHHHHSSCHHHHHHHHSSCCHHHHHHHHHHTTTT
T ss_pred CCCCccCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 345567789999999999999999999999999999999999999999976655
No 5
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=98.11 E-value=2.2e-06 Score=76.01 Aligned_cols=47 Identities=28% Similarity=0.441 Sum_probs=44.1
Q ss_pred ccccccCHHHHHHHHHHHHHhcccHHHHHHHhhhcchhhHHHHHHHH
Q 003898 49 RQWAAWTREEEESFFTALRQVGKNFEKITHRVRSKNKDQVRHYYYRL 95 (788)
Q Consensus 49 R~w~~Ws~eEkn~FFeaL~e~GKdFEaI~~~i~~KnKdQVRhFYYrt 95 (788)
.....||.+|+..|-++|..|||||-+|+.+|..|+..|+-.|||..
T Consensus 41 ~~~~~WT~eE~~~F~~~~~~~gK~F~~Ia~~l~~Kt~~~cV~~YY~~ 87 (94)
T 4a69_C 41 QVMNMWSEQEKETFREKFMQHPKNFGLIASFLERKTVAECVLYYYLT 87 (94)
T ss_dssp HHTCCCCHHHHHHHHHHHHHSTTCHHHHHHTCTTCCHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHcCCCCHHHHHHHHhcc
Confidence 45689999999999999999999999999999999999999999953
No 6
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=98.05 E-value=2.6e-06 Score=93.94 Aligned_cols=52 Identities=27% Similarity=0.455 Sum_probs=46.9
Q ss_pred CCcccccccCHHHHHHHHHHHHHhcccHHHHHHHhhhcchhhHHHHHHHHHH
Q 003898 46 RPTRQWAAWTREEEESFFTALRQVGKNFEKITHRVRSKNKDQVRHYYYRLVR 97 (788)
Q Consensus 46 k~~R~w~~Ws~eEkn~FFeaL~e~GKdFEaI~~~i~~KnKdQVRhFYYrt~~ 97 (788)
+.++....||.+|...|-++|++|||||.+|+..|-+|+..|||.|||+.-+
T Consensus 375 ~~~~~~~~WT~eE~~~f~~al~~yGkdw~~IA~~VgTKT~~Qvk~fy~~~kk 426 (482)
T 2xag_B 375 VIQKCNARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRR 426 (482)
T ss_dssp CCCCCCSCCCHHHHHHHHHHHHHHTTCHHHHHHHHSSCCHHHHHHHHHHTTT
T ss_pred cccccCCCCCHHHHHHHHHHHHHHCcCHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 4456678999999999999999999999999999999999999999985433
No 7
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.00 E-value=1e-05 Score=67.63 Aligned_cols=53 Identities=28% Similarity=0.407 Sum_probs=49.0
Q ss_pred cccccCHHHHHHHHHHHHHhcccHHHHHHHhhhcchhhHHHHHHHHHHHHHhh
Q 003898 50 QWAAWTREEEESFFTALRQVGKNFEKITHRVRSKNKDQVRHYYYRLVRRMNKL 102 (788)
Q Consensus 50 ~w~~Ws~eEkn~FFeaL~e~GKdFEaI~~~i~~KnKdQVRhFYYrt~~rI~k~ 102 (788)
....||.+|...|.+++.+||.++..|+.+|..|+..|||.+|+..+++..+.
T Consensus 8 ~~~~WT~eEd~~l~~~~~~~G~~W~~Ia~~~~~Rt~~q~k~r~~~~l~~~~~~ 60 (72)
T 2cu7_A 8 YSVKWTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQYFKNKVKC 60 (72)
T ss_dssp CCCCCCHHHHHHHHHHHHHTCSCHHHHHHHHSSSCHHHHHHHHHHHHHHHSCS
T ss_pred CCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHHHHhc
Confidence 34789999999999999999999999999999999999999999998887654
No 8
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=97.73 E-value=3e-05 Score=66.81 Aligned_cols=51 Identities=22% Similarity=0.398 Sum_probs=45.6
Q ss_pred CCCcccccccCHHHHHHHHHHHHHhcccHHHHHHHhhhcchhhHHHHHHHH
Q 003898 45 KRPTRQWAAWTREEEESFFTALRQVGKNFEKITHRVRSKNKDQVRHYYYRL 95 (788)
Q Consensus 45 kk~~R~w~~Ws~eEkn~FFeaL~e~GKdFEaI~~~i~~KnKdQVRhFYYrt 95 (788)
++.......||.+|...|.+++..||.+..+|+.+|..|+..|||.+|.+.
T Consensus 12 ~~~~~~~~~WT~eEd~~Ll~~v~~~G~~W~~IA~~v~~RT~~qcr~r~~~~ 62 (79)
T 2yus_A 12 SKGASAGREWTEQETLLLLEALEMYKDDWNKVSEHVGSRTQDECILHFLRL 62 (79)
T ss_dssp CCSSCCSCCCCHHHHHHHHHHHHHSSSCHHHHHHHHSSCCHHHHHHHHTTS
T ss_pred ccccccCCCcCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHh
Confidence 344455689999999999999999999999999999999999999999754
No 9
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.72 E-value=3.1e-05 Score=64.78 Aligned_cols=53 Identities=17% Similarity=0.281 Sum_probs=47.0
Q ss_pred CcccccccCHHHHHHHHHHHHHhc------ccHHHHHHHhhhcchhhHHHHHHHHHHHH
Q 003898 47 PTRQWAAWTREEEESFFTALRQVG------KNFEKITHRVRSKNKDQVRHYYYRLVRRM 99 (788)
Q Consensus 47 ~~R~w~~Ws~eEkn~FFeaL~e~G------KdFEaI~~~i~~KnKdQVRhFYYrt~~rI 99 (788)
|......||.+|...|.+++.+|| .+..+|+.+|..|+..|||..|.+.+.++
T Consensus 4 p~~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~~Rt~~qcr~r~~~~l~~~ 62 (75)
T 2yum_A 4 GSSGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELGNRTAKQVASQVQKYFIKL 62 (75)
T ss_dssp CCCCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHSSSCHHHHHHHHHHHHGGG
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence 444457899999999999999999 89999999999999999999998776654
No 10
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=96.61 E-value=1.6e-05 Score=69.44 Aligned_cols=50 Identities=28% Similarity=0.523 Sum_probs=46.5
Q ss_pred cccccCHHHHHHHHHHHHHhcccHHHHHHHhhhcchhhHHHHHHHHHHHH
Q 003898 50 QWAAWTREEEESFFTALRQVGKNFEKITHRVRSKNKDQVRHYYYRLVRRM 99 (788)
Q Consensus 50 ~w~~Ws~eEkn~FFeaL~e~GKdFEaI~~~i~~KnKdQVRhFYYrt~~rI 99 (788)
....||.+|...|++++.+||.++..|+.+|..|+..|||.+||+..+++
T Consensus 15 ~~~~WT~eEd~~l~~~~~~~G~~W~~IA~~l~gRt~~q~k~r~~~~lrk~ 64 (89)
T 2ltp_A 15 YFQGWTEEEMGTAKKGLLEHGRNWSAIARMVGSKTVSQCKNFYFNYKKRQ 64 (89)
Confidence 34689999999999999999999999999999999999999999888764
No 11
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=97.41 E-value=0.00022 Score=57.74 Aligned_cols=46 Identities=22% Similarity=0.512 Sum_probs=42.8
Q ss_pred ccccCHHHHHHHHHHHHHhc-ccHHHHHHHhhhcchhhHHHHHHHHH
Q 003898 51 WAAWTREEEESFFTALRQVG-KNFEKITHRVRSKNKDQVRHYYYRLV 96 (788)
Q Consensus 51 w~~Ws~eEkn~FFeaL~e~G-KdFEaI~~~i~~KnKdQVRhFYYrt~ 96 (788)
...||.+|...+.+++.+|| ++..+|+.+|..|+..|+|..|++.+
T Consensus 8 ~~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~r~~~~l 54 (60)
T 1x41_A 8 DPSWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMKYF 54 (60)
T ss_dssp CSSSCHHHHHHHHHHHHHTCTTCHHHHHHHHTTSCHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHHCcCcHHHHHHHhCCCCHHHHHHHHHHHc
Confidence 46899999999999999999 79999999999999999999998654
No 12
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=97.31 E-value=0.0001 Score=63.00 Aligned_cols=57 Identities=26% Similarity=0.331 Sum_probs=49.1
Q ss_pred ccCCCcccccccCHHHHHHHHHHHHHhc----ccHHHHHHHhhhcchhhHHHHHHHHHHHH
Q 003898 43 SAKRPTRQWAAWTREEEESFFTALRQVG----KNFEKITHRVRSKNKDQVRHYYYRLVRRM 99 (788)
Q Consensus 43 ~~kk~~R~w~~Ws~eEkn~FFeaL~e~G----KdFEaI~~~i~~KnKdQVRhFYYrt~~rI 99 (788)
+.+++.-....||.+|...|-+||..|| .+.++|+.+|..|+..|||+.|..+++.+
T Consensus 10 ~~~~~~~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vpGRT~~qcr~Ry~~L~~d~ 70 (73)
T 2cqr_A 10 RKERARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKLLVSGP 70 (73)
T ss_dssp CCCTTTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHHHHHHHHSSC
T ss_pred cccccccCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHcc
Confidence 3455555667899999999999999999 68999999999999999999999876543
No 13
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=97.28 E-value=0.0005 Score=60.91 Aligned_cols=54 Identities=17% Similarity=0.361 Sum_probs=50.4
Q ss_pred ccccCHHHHHHHHHHHHHhcccHHHHHHHhhhcchhhHHHHHHHHHHHHHhhcC
Q 003898 51 WAAWTREEEESFFTALRQVGKNFEKITHRVRSKNKDQVRHYYYRLVRRMNKLLG 104 (788)
Q Consensus 51 w~~Ws~eEkn~FFeaL~e~GKdFEaI~~~i~~KnKdQVRhFYYrt~~rI~k~L~ 104 (788)
...||.+|...+.+++.+||.+...|+.+|..++..|||+.|+.+.+++.+..+
T Consensus 53 ~~~WT~eEd~~L~~~~~~~G~~W~~Ia~~l~gRt~~~~k~rw~~l~r~~~~~~~ 106 (107)
T 2k9n_A 53 TDPWSPEEDMLLDQKYAEYGPKWNKISKFLKNRSDNNIRNRWMMIARHRAKHQK 106 (107)
T ss_dssp TCCCCHHHHHHHHHHHHHTCSCHHHHHHHHSSSCHHHHHHHHHHHHHHHHSSTT
T ss_pred ccccCHHHHHHHHHHHHHhCcCHHHHHHHCCCCCHHHHHHHHHHHHhhHHHhhc
Confidence 478999999999999999999999999999999999999999999999887643
No 14
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=97.25 E-value=0.00035 Score=56.41 Aligned_cols=45 Identities=24% Similarity=0.484 Sum_probs=42.0
Q ss_pred cccCHHHHHHHHHHHHHhc-ccHHHHHHHhh-hcchhhHHHHHHHHH
Q 003898 52 AAWTREEEESFFTALRQVG-KNFEKITHRVR-SKNKDQVRHYYYRLV 96 (788)
Q Consensus 52 ~~Ws~eEkn~FFeaL~e~G-KdFEaI~~~i~-~KnKdQVRhFYYrt~ 96 (788)
..||.+|...+.+++.+|| .+..+|+.+|. .|+..|+|..|.+.+
T Consensus 10 ~~WT~eED~~L~~~v~~~G~~~W~~IA~~~~~~Rt~~qcr~r~~~~~ 56 (58)
T 2elk_A 10 ENWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKTY 56 (58)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCHHHHHHHHCSSCCHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHHCcCCHHHHHHHHCCCCCHHHHHHHHHHHc
Confidence 4699999999999999999 99999999999 999999999998753
No 15
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=97.17 E-value=5.9e-05 Score=83.35 Aligned_cols=51 Identities=24% Similarity=0.417 Sum_probs=0.0
Q ss_pred cccccCHHHHHHHHHHHHHhcccHHHHHHHhhhcchhhHHHHHHHHHHHHHh
Q 003898 50 QWAAWTREEEESFFTALRQVGKNFEKITHRVRSKNKDQVRHYYYRLVRRMNK 101 (788)
Q Consensus 50 ~w~~Ws~eEkn~FFeaL~e~GKdFEaI~~~i~~KnKdQVRhFYYrt~~rI~k 101 (788)
....||.+|+..|-++|..|||||-.|+.+|..|+..+|-.|||. |+|-..
T Consensus 188 ~~d~WT~eE~~lFe~al~~yGKdF~~I~~~lp~Ksv~e~V~yYY~-WKKt~~ 238 (482)
T 2xag_B 188 FPDEWTVEDKVLFEQAFSFHGKTFHRIQQMLPDKSIASLVKFYYS-WKKTRT 238 (482)
T ss_dssp ----------------------------------------------------
T ss_pred cccccCHHHHHHHHHHHHHcCccHHHHHHHcCCCCHHHHHHHhcc-cccccc
Confidence 346899999999999999999999999999999999999999998 776544
No 16
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=97.06 E-value=0.00073 Score=52.77 Aligned_cols=45 Identities=24% Similarity=0.527 Sum_probs=42.4
Q ss_pred cccCHHHHHHHHHHHHHhcc-cHHHHHHHhhhcchhhHHHHHHHHH
Q 003898 52 AAWTREEEESFFTALRQVGK-NFEKITHRVRSKNKDQVRHYYYRLV 96 (788)
Q Consensus 52 ~~Ws~eEkn~FFeaL~e~GK-dFEaI~~~i~~KnKdQVRhFYYrt~ 96 (788)
..||.+|...+.+++.+||. +...|+.+|..|+..|+|+.|++.+
T Consensus 4 ~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L 49 (52)
T 1guu_A 4 TRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVL 49 (52)
T ss_dssp CCCCHHHHHHHHHHHHHHCSSCHHHHHHTSTTCCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhCCCCHHHHHHHcCCCCHHHHHHHHHHHc
Confidence 57999999999999999998 9999999999999999999998764
No 17
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=96.99 E-value=0.00098 Score=53.56 Aligned_cols=46 Identities=22% Similarity=0.471 Sum_probs=42.2
Q ss_pred cccccCHHHHHHHHHHHHHhc-ccHHHHHHHhhhcchhhHHHHHHHH
Q 003898 50 QWAAWTREEEESFFTALRQVG-KNFEKITHRVRSKNKDQVRHYYYRL 95 (788)
Q Consensus 50 ~w~~Ws~eEkn~FFeaL~e~G-KdFEaI~~~i~~KnKdQVRhFYYrt 95 (788)
....||.+|...+.+++.+|| ++...|+.+|..|+..|+|+.|++.
T Consensus 7 ~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~ 53 (60)
T 2d9a_A 7 GKVKWTHEEDEQLRALVRQFGQQDWKFLASHFPNRTDQQCQYRWLRV 53 (60)
T ss_dssp CCSCCCHHHHHHHHHHHHHTCTTCHHHHHHHCSSSCHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHccCCCHHHHHHHHHHH
Confidence 346899999999999999999 6999999999999999999999853
No 18
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.92 E-value=0.002 Score=53.27 Aligned_cols=56 Identities=20% Similarity=0.421 Sum_probs=47.5
Q ss_pred cccCHHHHHHHHHHHHHhc-ccHHHHHHHhhhcchhhHHHHHHHHHHHHHhhcCCCcccCCCCh
Q 003898 52 AAWTREEEESFFTALRQVG-KNFEKITHRVRSKNKDQVRHYYYRLVRRMNKLLGPGLCLDAKNS 114 (788)
Q Consensus 52 ~~Ws~eEkn~FFeaL~e~G-KdFEaI~~~i~~KnKdQVRhFYYrt~~rI~k~L~~~~~iD~Kn~ 114 (788)
..||.+|-..+.+++.+|| ++...|+.+|..|+..|+|+.|++ +|.|.+.-.++-.
T Consensus 10 ~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~l~~Rt~~qcr~Rw~~-------~L~p~i~~~~wt~ 66 (70)
T 2dim_A 10 GVWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYE-------WLDPSIKKTEWSG 66 (70)
T ss_dssp CCCCHHHHHHHHHHHHHTCSSCHHHHHHHSTTCCHHHHHHHHHH-------TSCSSSCCCCSCC
T ss_pred CCCCHHHHHHHHHHHHHHCcCCHHHHHHHhcCCCHHHHHHHHHH-------HcCCcccCCCCCh
Confidence 6899999999999999999 899999999999999999999976 5556554444433
No 19
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=96.89 E-value=0.0035 Score=57.11 Aligned_cols=80 Identities=18% Similarity=0.306 Sum_probs=64.6
Q ss_pred cccccCHHHHHHHHHHHHHhcccHHHHHHHhhhcchhhHHHHHHHHHHHHHhhcCCCcccCCCChhhHHHHHHHHHHHHH
Q 003898 50 QWAAWTREEEESFFTALRQVGKNFEKITHRVRSKNKDQVRHYYYRLVRRMNKLLGPGLCLDAKNSKDTNAAMLRWWSLLE 129 (788)
Q Consensus 50 ~w~~Ws~eEkn~FFeaL~e~GKdFEaI~~~i~~KnKdQVRhFYYrt~~rI~k~L~~~~~iD~Kn~kev~~Am~~w~sl~~ 129 (788)
....||.+|-+...+++..||.+...|+.+|..|+..|+|+-|++ +|.|++.-.++..+|... ++ .+.+
T Consensus 10 kk~~WT~eED~~L~~~v~~~G~~W~~Ia~~~~~Rt~~qcr~Rw~~-------~l~p~~~~~~WT~eEd~~-L~---~~v~ 78 (126)
T 3osg_A 10 KKQKFTPEEDEMLKRAVAQHGSDWKMIAATFPNRNARQCRDRWKN-------YLAPSISHTPWTAEEDAL-LV---QKIQ 78 (126)
T ss_dssp SSCCCCHHHHHHHHHHHHHHTTCHHHHHHTCTTCCHHHHHHHHHH-------HTSTTSCCSCCCHHHHHH-HH---HHHH
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHhh-------hcccccccccCCHHHHHH-HH---HHHH
Confidence 346899999999999999999999999999999999999998885 456766666777776654 33 4567
Q ss_pred Hhcccchhhcc
Q 003898 130 KYSCKASKLHL 140 (788)
Q Consensus 130 K~gc~~sKL~~ 140 (788)
+||..+.++..
T Consensus 79 ~~G~~W~~Ia~ 89 (126)
T 3osg_A 79 EYGRQWAIIAK 89 (126)
T ss_dssp HHCSCHHHHHT
T ss_pred HHCcCHHHHHH
Confidence 88877766543
No 20
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=96.89 E-value=0.0062 Score=53.93 Aligned_cols=76 Identities=18% Similarity=0.303 Sum_probs=62.2
Q ss_pred cccCHHHHHHHHHHHHHhcc-cHHHHHHHhhhcchhhHHHHHHHHHHHHHhhcCCCcccCCCChhhHHHHHHHHHHHHHH
Q 003898 52 AAWTREEEESFFTALRQVGK-NFEKITHRVRSKNKDQVRHYYYRLVRRMNKLLGPGLCLDAKNSKDTNAAMLRWWSLLEK 130 (788)
Q Consensus 52 ~~Ws~eEkn~FFeaL~e~GK-dFEaI~~~i~~KnKdQVRhFYYrt~~rI~k~L~~~~~iD~Kn~kev~~Am~~w~sl~~K 130 (788)
..||.+|-+.+.+++..||. +...|+.+|..++..|+|.-|.+ +|.|++.-.++..+|... |+ .+..+
T Consensus 2 ~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~-------~L~p~i~~~~WT~eEd~~-L~---~~~~~ 70 (107)
T 2k9n_A 2 VKFTEEEDLKLQQLVMRYGAKDWIRISQLMITRNPRQCRERWNN-------YINPALRTDPWSPEEDML-LD---QKYAE 70 (107)
T ss_dssp CSSCHHHHHHHHHHHHHHCSSCHHHHHHHTTTSCHHHHHHHHHH-------HSSSCCTTCCCCHHHHHH-HH---HHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCCHHHHhhhcCCCCHHHHHHHHHH-------HHcccccccccCHHHHHH-HH---HHHHH
Confidence 46999999999999999995 99999999999999999998764 678877777888777654 43 35678
Q ss_pred hcccchhh
Q 003898 131 YSCKASKL 138 (788)
Q Consensus 131 ~gc~~sKL 138 (788)
||..+.++
T Consensus 71 ~G~~W~~I 78 (107)
T 2k9n_A 71 YGPKWNKI 78 (107)
T ss_dssp TCSCHHHH
T ss_pred hCcCHHHH
Confidence 88766554
No 21
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.82 E-value=0.0029 Score=51.76 Aligned_cols=50 Identities=20% Similarity=0.373 Sum_probs=45.1
Q ss_pred ccccCHHHHHHHHHHHHHhcccHHHHHHHhhhcchhhHHHHHHHHHHHHHh
Q 003898 51 WAAWTREEEESFFTALRQVGKNFEKITHRVRSKNKDQVRHYYYRLVRRMNK 101 (788)
Q Consensus 51 w~~Ws~eEkn~FFeaL~e~GKdFEaI~~~i~~KnKdQVRhFYYrt~~rI~k 101 (788)
...||.+|...+.++.+++|.+..+|+. +.-|+..|||..|++.++...+
T Consensus 9 k~~WT~eED~~L~~~~~~~g~~W~~Ia~-~~gRt~~qcr~Rw~~~l~~~~~ 58 (66)
T 2din_A 9 KTEWSREEEEKLLHLAKLMPTQWRTIAP-IIGRTAAQCLEHYEFLLDKAAQ 58 (66)
T ss_dssp CCCCCHHHHHHHHHHHHHCTTCHHHHHH-HHSSCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCCCHHHHhc-ccCcCHHHHHHHHHHHhChHhc
Confidence 3679999999999999999999999999 6679999999999998886644
No 22
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=96.81 E-value=0.00081 Score=58.93 Aligned_cols=49 Identities=18% Similarity=0.527 Sum_probs=45.0
Q ss_pred cccccCHHHHHHHHHHHHHhcccHHHHHHHhhhcchhhHHHHHHHHHHH
Q 003898 50 QWAAWTREEEESFFTALRQVGKNFEKITHRVRSKNKDQVRHYYYRLVRR 98 (788)
Q Consensus 50 ~w~~Ws~eEkn~FFeaL~e~GKdFEaI~~~i~~KnKdQVRhFYYrt~~r 98 (788)
....||.+|...+.+++++||.+...|+.+|..++..|||+.|+.++++
T Consensus 55 ~~~~Wt~eEd~~L~~~~~~~G~~W~~Ia~~l~gRt~~~~k~rw~~~~~~ 103 (105)
T 1gv2_A 55 KKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRR 103 (105)
T ss_dssp CCCCCCHHHHHHHHHHHHHHSSCHHHHHTTCTTCCHHHHHHHHHHHTC-
T ss_pred cccCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHHHhc
Confidence 3478999999999999999999999999999999999999999987764
No 23
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=96.80 E-value=0.0018 Score=57.70 Aligned_cols=50 Identities=20% Similarity=0.434 Sum_probs=45.5
Q ss_pred cccCHHHHHHHHHHHHHhc----ccHHHHHHHhhhcchhhHHHHHHHHHHHHHh
Q 003898 52 AAWTREEEESFFTALRQVG----KNFEKITHRVRSKNKDQVRHYYYRLVRRMNK 101 (788)
Q Consensus 52 ~~Ws~eEkn~FFeaL~e~G----KdFEaI~~~i~~KnKdQVRhFYYrt~~rI~k 101 (788)
..||.+|...|-+||..|| .+.++|+.+|..|+.+|||..|..+...|..
T Consensus 9 ~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vpGRT~~q~k~ry~~l~~dv~~ 62 (93)
T 2cjj_A 9 RPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVEDIKY 62 (93)
T ss_dssp CSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 5799999999999999997 5699999999999999999999999887643
No 24
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=96.76 E-value=0.0026 Score=52.64 Aligned_cols=54 Identities=20% Similarity=0.433 Sum_probs=48.5
Q ss_pred cCCCcccccccCHHHHHHHHHHHHHhc-ccHHHHHHHhh--hcchhhHHHHHHHHHH
Q 003898 44 AKRPTRQWAAWTREEEESFFTALRQVG-KNFEKITHRVR--SKNKDQVRHYYYRLVR 97 (788)
Q Consensus 44 ~kk~~R~w~~Ws~eEkn~FFeaL~e~G-KdFEaI~~~i~--~KnKdQVRhFYYrt~~ 97 (788)
.+++++....||.+|.+...+++.+|| ++...|+.+|. .++-.|+|.-|.+..+
T Consensus 3 ~~~~~~~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~l~ 59 (69)
T 1ity_A 3 EKHRARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKK 59 (69)
T ss_dssp CTTCSSSCCCCCHHHHHHHHHHHHHHCSSCHHHHHHHSCCSSCCHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHCCCcHHHHHHHcCcCCCCHHHHHHHHHHHcC
Confidence 456677778999999999999999999 69999999999 8999999999987665
No 25
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=96.75 E-value=0.0015 Score=59.60 Aligned_cols=50 Identities=12% Similarity=0.407 Sum_probs=46.9
Q ss_pred ccccCHHHHHHHHHHHHHhcccHHHHHHHhhhcchhhHHHHHHHHHHHHH
Q 003898 51 WAAWTREEEESFFTALRQVGKNFEKITHRVRSKNKDQVRHYYYRLVRRMN 100 (788)
Q Consensus 51 w~~Ws~eEkn~FFeaL~e~GKdFEaI~~~i~~KnKdQVRhFYYrt~~rI~ 100 (788)
...||.+|...+.+++++||.+...|+.+|..|+..|||+.|+...+++.
T Consensus 62 ~~~WT~eEd~~L~~~v~~~G~~W~~Ia~~l~gRt~~~~k~rw~~l~~k~~ 111 (126)
T 3osg_A 62 HTPWTAEEDALLVQKIQEYGRQWAIIAKFFPGRTDIHIKNRWVTISNKLG 111 (126)
T ss_dssp CSCCCHHHHHHHHHHHHHHCSCHHHHHTTSTTCCHHHHHHHHHHHHHHTT
T ss_pred cccCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHhcC
Confidence 36899999999999999999999999999999999999999999888764
No 26
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=96.72 E-value=0.0015 Score=51.13 Aligned_cols=44 Identities=18% Similarity=0.470 Sum_probs=41.1
Q ss_pred cccCHHHHHHHHHHHHHhcc-cHHHHHHHhhhcchhhHHHHHHHH
Q 003898 52 AAWTREEEESFFTALRQVGK-NFEKITHRVRSKNKDQVRHYYYRL 95 (788)
Q Consensus 52 ~~Ws~eEkn~FFeaL~e~GK-dFEaI~~~i~~KnKdQVRhFYYrt 95 (788)
..||.+|...+.+++.+||. +...|+.+|..|+..|+|+.|++.
T Consensus 4 ~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~ 48 (52)
T 1gvd_A 4 GPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNH 48 (52)
T ss_dssp CSCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHHCcChHHHHHHHcCCCCHHHHHHHHHHH
Confidence 57999999999999999995 899999999999999999999854
No 27
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=96.63 E-value=0.0058 Score=53.51 Aligned_cols=77 Identities=13% Similarity=0.327 Sum_probs=62.7
Q ss_pred cccCHHHHHHHHHHHHHhcc-cHHHHHHHhhhcchhhHHHHHHHHHHHHHhhcCCCcccCCCChhhHHHHHHHHHHHHHH
Q 003898 52 AAWTREEEESFFTALRQVGK-NFEKITHRVRSKNKDQVRHYYYRLVRRMNKLLGPGLCLDAKNSKDTNAAMLRWWSLLEK 130 (788)
Q Consensus 52 ~~Ws~eEkn~FFeaL~e~GK-dFEaI~~~i~~KnKdQVRhFYYrt~~rI~k~L~~~~~iD~Kn~kev~~Am~~w~sl~~K 130 (788)
..||.+|-..+.+++..||. +...|+.+|..|+..|+|+.|.+ +|.|++.-.++..+|-.. ++ .+.++
T Consensus 5 ~~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~-------~l~p~~~~~~Wt~eEd~~-L~---~~~~~ 73 (105)
T 1gv2_A 5 GPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHN-------HLNPEVKKTSWTEEEDRI-IY---QAHKR 73 (105)
T ss_dssp SCCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHH-------TTCCCCCCCCCCHHHHHH-HH---HHHHH
T ss_pred CCCCHHHHHHHHHHHHHhCCCcHHHHhhhhcCCCHHHHHHHHHh-------ccCCcccccCCCHHHHHH-HH---HHHHH
Confidence 57999999999999999995 89999999999999999998866 577877777887776644 43 35678
Q ss_pred hcccchhhc
Q 003898 131 YSCKASKLH 139 (788)
Q Consensus 131 ~gc~~sKL~ 139 (788)
||..+.++.
T Consensus 74 ~G~~W~~Ia 82 (105)
T 1gv2_A 74 LGNRWAEIA 82 (105)
T ss_dssp HSSCHHHHH
T ss_pred hCCCHHHHH
Confidence 887665543
No 28
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=96.61 E-value=0.0023 Score=55.09 Aligned_cols=44 Identities=16% Similarity=0.369 Sum_probs=40.7
Q ss_pred cccCHHHHHHHHHHHHHhcc----cHHHHHHHhhhcchhhHHHHHHHH
Q 003898 52 AAWTREEEESFFTALRQVGK----NFEKITHRVRSKNKDQVRHYYYRL 95 (788)
Q Consensus 52 ~~Ws~eEkn~FFeaL~e~GK----dFEaI~~~i~~KnKdQVRhFYYrt 95 (788)
..||.+|...|=+||..|++ +.++|+.+|..|+++||++.|..+
T Consensus 9 ~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~gKT~eE~~~hY~~l 56 (73)
T 1wgx_A 9 KEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGSRSPEECQRKYMEN 56 (73)
T ss_dssp SCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTTSCHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 57999999999999999997 499999999999999999999765
No 29
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=96.59 E-value=0.0088 Score=54.29 Aligned_cols=78 Identities=14% Similarity=0.335 Sum_probs=63.2
Q ss_pred ccccCHHHHHHHHHHHHHhc-ccHHHHHHHhhhcchhhHHHHHHHHHHHHHhhcCCCcccCCCChhhHHHHHHHHHHHHH
Q 003898 51 WAAWTREEEESFFTALRQVG-KNFEKITHRVRSKNKDQVRHYYYRLVRRMNKLLGPGLCLDAKNSKDTNAAMLRWWSLLE 129 (788)
Q Consensus 51 w~~Ws~eEkn~FFeaL~e~G-KdFEaI~~~i~~KnKdQVRhFYYrt~~rI~k~L~~~~~iD~Kn~kev~~Am~~w~sl~~ 129 (788)
...||.+|-..+-+++.+|| ++..+|+.+|..++..|+|+.|.+ +|.|++.-.++..+|... ++ ++.+
T Consensus 27 k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~-------~l~p~~~~~~WT~eEd~~-L~---~~~~ 95 (128)
T 1h8a_C 27 KGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKGRIGKQCRERWHN-------HLNPEVKKTSWTEEEDRI-IY---QAHK 95 (128)
T ss_dssp CSCCCHHHHHHHHHHHHHTCSCCHHHHHHHSSSCCHHHHHHHHHH-------TTCSSSCCSCCCHHHHHH-HH---HHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhcCCcHHHHHHHHHH-------hcccccccccCCHHHHHH-HH---HHHH
Confidence 36899999999999999999 579999999999999999998875 677877777787776543 33 4567
Q ss_pred Hhcccchhhc
Q 003898 130 KYSCKASKLH 139 (788)
Q Consensus 130 K~gc~~sKL~ 139 (788)
+||..+.++.
T Consensus 96 ~~G~~W~~Ia 105 (128)
T 1h8a_C 96 RLGNRWAEIA 105 (128)
T ss_dssp HHCSCHHHHG
T ss_pred HHCcCHHHHH
Confidence 8887666654
No 30
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=96.29 E-value=0.0016 Score=59.15 Aligned_cols=49 Identities=20% Similarity=0.529 Sum_probs=45.1
Q ss_pred cccccCHHHHHHHHHHHHHhcccHHHHHHHhhhcchhhHHHHHHHHHHH
Q 003898 50 QWAAWTREEEESFFTALRQVGKNFEKITHRVRSKNKDQVRHYYYRLVRR 98 (788)
Q Consensus 50 ~w~~Ws~eEkn~FFeaL~e~GKdFEaI~~~i~~KnKdQVRhFYYrt~~r 98 (788)
....||.+|...+.+++++||.+...|+.+|..++..||++.|+.+++|
T Consensus 78 ~~~~WT~eEd~~L~~~~~~~G~~W~~Ia~~l~gRt~~~~k~r~~~~~~~ 126 (128)
T 1h8a_C 78 KKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAVKNHWNSTMRR 126 (128)
T ss_dssp CCSCCCHHHHHHHHHHHHHHCSCHHHHGGGSTTCCHHHHHHHHHTTTTC
T ss_pred ccccCCHHHHHHHHHHHHHHCcCHHHHHHHCCCCCHHHHHHHHHHHHhc
Confidence 3478999999999999999999999999999999999999999977653
No 31
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=95.97 E-value=0.0074 Score=51.37 Aligned_cols=45 Identities=20% Similarity=0.360 Sum_probs=39.1
Q ss_pred cccCHHHHHHHHHHHHHhc----ccHHHHHHHhhhcchhhHHHHHHHHHH
Q 003898 52 AAWTREEEESFFTALRQVG----KNFEKITHRVRSKNKDQVRHYYYRLVR 97 (788)
Q Consensus 52 ~~Ws~eEkn~FFeaL~e~G----KdFEaI~~~i~~KnKdQVRhFYYrt~~ 97 (788)
..||.+|...|=.||+.|+ ...++|+.+| -|+.+||+.+|-.+..
T Consensus 9 ~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~l-gRt~~eV~~~y~~L~~ 57 (72)
T 2cqq_A 9 PEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-GRSVTDVTTKAKQLKD 57 (72)
T ss_dssp CCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH-TSCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHh-CCCHHHHHHHHHHHHH
Confidence 5799999999999999997 5699999999 7999999997655433
No 32
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=95.85 E-value=0.013 Score=50.10 Aligned_cols=43 Identities=16% Similarity=0.236 Sum_probs=40.6
Q ss_pred cccCHHHHHHHHHHHHHhcccHHHHHHHhhhcchhhHHHHHHHH
Q 003898 52 AAWTREEEESFFTALRQVGKNFEKITHRVRSKNKDQVRHYYYRL 95 (788)
Q Consensus 52 ~~Ws~eEkn~FFeaL~e~GKdFEaI~~~i~~KnKdQVRhFYYrt 95 (788)
..||.||.+...+++.++|.+...|+.+| .++-.|||+.|+.+
T Consensus 24 ~~wT~EED~~L~~l~~~~G~kW~~IA~~l-gRt~~q~knRw~~L 66 (73)
T 2llk_A 24 GKYTPEEIEKLKELRIKHGNDWATIGAAL-GRSASSVKDRCRLM 66 (73)
T ss_dssp CSSCHHHHHHHHHHHHHHSSCHHHHHHHH-TSCHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHHHHCCCHHHHHHHh-CCCHHHHHHHHHHH
Confidence 68999999999999999999999999999 99999999998753
No 33
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=95.78 E-value=0.034 Score=52.11 Aligned_cols=78 Identities=14% Similarity=0.320 Sum_probs=62.4
Q ss_pred cccccCHHHHHHHHHHHHHhc-ccHHHHHHHhhhcchhhHHHHHHHHHHHHHhhcCCCcccCCCChhhHHHHHHHHHHHH
Q 003898 50 QWAAWTREEEESFFTALRQVG-KNFEKITHRVRSKNKDQVRHYYYRLVRRMNKLLGPGLCLDAKNSKDTNAAMLRWWSLL 128 (788)
Q Consensus 50 ~w~~Ws~eEkn~FFeaL~e~G-KdFEaI~~~i~~KnKdQVRhFYYrt~~rI~k~L~~~~~iD~Kn~kev~~Am~~w~sl~ 128 (788)
....||.+|...+.+++.+|| ++...|+.+|..++..|+|..|++ +|.|+..-.++..+|... ++ .+.
T Consensus 57 ~~~~Wt~eEd~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~-------~l~p~~~~~~WT~eEd~~-L~---~~~ 125 (159)
T 1h89_C 57 IKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHN-------HLNPEVKKTSWTEEEDRI-IY---QAH 125 (159)
T ss_dssp CCSCCCHHHHHHHHHHHHHHCSCCHHHHHHTSTTCCHHHHHHHHHH-------TTCTTSCCSCCCHHHHHH-HH---HHH
T ss_pred CCCCCChHHHHHHHHHHHHhCcccHHHHHHHcCCCCHHHHHHHHHH-------HhCccccccCCChHHHHH-HH---HHH
Confidence 347899999999999999999 589999999999999999998865 577777677777766654 33 455
Q ss_pred HHhcccchhh
Q 003898 129 EKYSCKASKL 138 (788)
Q Consensus 129 ~K~gc~~sKL 138 (788)
++||..+.++
T Consensus 126 ~~~g~~W~~I 135 (159)
T 1h89_C 126 KRLGNRWAEI 135 (159)
T ss_dssp HHHCSCHHHH
T ss_pred HHHCCCHHHH
Confidence 7788655554
No 34
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=95.64 E-value=0.0044 Score=58.07 Aligned_cols=49 Identities=18% Similarity=0.527 Sum_probs=45.1
Q ss_pred cccccCHHHHHHHHHHHHHhcccHHHHHHHhhhcchhhHHHHHHHHHHH
Q 003898 50 QWAAWTREEEESFFTALRQVGKNFEKITHRVRSKNKDQVRHYYYRLVRR 98 (788)
Q Consensus 50 ~w~~Ws~eEkn~FFeaL~e~GKdFEaI~~~i~~KnKdQVRhFYYrt~~r 98 (788)
....||.+|...+.+++++||.+...|+.+|..++..||++.|+.+++|
T Consensus 109 ~~~~WT~eEd~~L~~~~~~~g~~W~~Ia~~l~gRt~~~~knr~~~~~r~ 157 (159)
T 1h89_C 109 KKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRR 157 (159)
T ss_dssp CCSCCCHHHHHHHHHHHHHHCSCHHHHHTTSTTCCHHHHHHHHHTTTCC
T ss_pred cccCCChHHHHHHHHHHHHHCCCHHHHHHHCCCCCHHHHHHHHHHHHhc
Confidence 4478999999999999999999999999999999999999999977653
No 35
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=95.64 E-value=0.016 Score=45.59 Aligned_cols=46 Identities=20% Similarity=0.449 Sum_probs=42.4
Q ss_pred cccCHHHHHHHHHHHHHhc-ccHHHHHHHhh--hcchhhHHHHHHHHHH
Q 003898 52 AAWTREEEESFFTALRQVG-KNFEKITHRVR--SKNKDQVRHYYYRLVR 97 (788)
Q Consensus 52 ~~Ws~eEkn~FFeaL~e~G-KdFEaI~~~i~--~KnKdQVRhFYYrt~~ 97 (788)
..||.+|.....+++.+|| ++...|+.+|. .++-.|+|+-|.+..+
T Consensus 3 ~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~~k 51 (53)
T 1w0t_A 3 QAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKK 51 (53)
T ss_dssp CCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCCCHHHHHHHHHHHHc
Confidence 5799999999999999999 79999999999 8999999998887654
No 36
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=95.46 E-value=0.0072 Score=55.28 Aligned_cols=48 Identities=19% Similarity=0.497 Sum_probs=45.0
Q ss_pred cccCHHHHHHHHHHHHHhcccHHHHHHHhhhcchhhHHHHHHHHHHHH
Q 003898 52 AAWTREEEESFFTALRQVGKNFEKITHRVRSKNKDQVRHYYYRLVRRM 99 (788)
Q Consensus 52 ~~Ws~eEkn~FFeaL~e~GKdFEaI~~~i~~KnKdQVRhFYYrt~~rI 99 (788)
..||.+|...+.+++.+||.+...|+.+|..++..|||+.|++.+++-
T Consensus 55 ~~Wt~eEd~~L~~~~~~~G~~W~~Ia~~l~gRt~~~~k~rw~~~l~~~ 102 (131)
T 3zqc_A 55 HAWTPEEDETIFRNYLKLGSKWSVIAKLIPGRTDNAIKNRWNSSISKR 102 (131)
T ss_dssp SCCCHHHHHHHHHHHHHSCSCHHHHTTTSTTCCHHHHHHHHHHTTGGG
T ss_pred CCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 589999999999999999999999999999999999999999887654
No 37
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=95.22 E-value=0.024 Score=51.76 Aligned_cols=78 Identities=18% Similarity=0.314 Sum_probs=63.4
Q ss_pred cccCHHHHHHHHHHHHHhc-ccHHHHHHHhhhcchhhHHHHHHHHHHHHHhhcCCCcccCCCChhhHHHHHHHHHHHHHH
Q 003898 52 AAWTREEEESFFTALRQVG-KNFEKITHRVRSKNKDQVRHYYYRLVRRMNKLLGPGLCLDAKNSKDTNAAMLRWWSLLEK 130 (788)
Q Consensus 52 ~~Ws~eEkn~FFeaL~e~G-KdFEaI~~~i~~KnKdQVRhFYYrt~~rI~k~L~~~~~iD~Kn~kev~~Am~~w~sl~~K 130 (788)
..||.+|-+...+++..|| ++...|+.+|..++..|+|+-|++ +|.|++.-.++..+|... |+ .+..+
T Consensus 3 g~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~-------~l~p~~~~~~Wt~eEd~~-L~---~~~~~ 71 (131)
T 3zqc_A 3 GPFTEAEDDLIREYVKENGPQNWPRITSFLPNRSPKQCRERWFN-------HLDPAVVKHAWTPEEDET-IF---RNYLK 71 (131)
T ss_dssp SSCCHHHHHHHHHHHHHHCSCCGGGGTTSCTTSCHHHHHHHHHH-------HTSTTCCCSCCCHHHHHH-HH---HHHHH
T ss_pred CCCCHHHHHHHHHHHHHhCcCCHHHHHHHHCCCCHHHHHHHHhh-------ccCccccCCCCCHHHHHH-HH---HHHHH
Confidence 4699999999999999999 799999999999999999998876 456766666787777654 43 35688
Q ss_pred hcccchhhcc
Q 003898 131 YSCKASKLHL 140 (788)
Q Consensus 131 ~gc~~sKL~~ 140 (788)
||..+.++..
T Consensus 72 ~G~~W~~Ia~ 81 (131)
T 3zqc_A 72 LGSKWSVIAK 81 (131)
T ss_dssp SCSCHHHHTT
T ss_pred HCcCHHHHHH
Confidence 8987766544
No 38
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=95.06 E-value=0.036 Score=45.87 Aligned_cols=46 Identities=20% Similarity=0.381 Sum_probs=40.6
Q ss_pred cccCHHHHHHHHHHHHHhc-ccHHHHHHHhh--hcchhhHHHHHHHHHH
Q 003898 52 AAWTREEEESFFTALRQVG-KNFEKITHRVR--SKNKDQVRHYYYRLVR 97 (788)
Q Consensus 52 ~~Ws~eEkn~FFeaL~e~G-KdFEaI~~~i~--~KnKdQVRhFYYrt~~ 97 (788)
..||.||-+...+++.+|| ++..+|+..+. .++-.|+|+-|.+..+
T Consensus 12 ~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~nl~k 60 (64)
T 3sjm_A 12 QKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKR 60 (64)
T ss_dssp CCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHccCCCchHHHHhhcCCCCCCHHHHHHHHHHHhc
Confidence 5799999999999999999 69999999865 7899999998876543
No 39
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=94.42 E-value=0.0034 Score=54.46 Aligned_cols=42 Identities=24% Similarity=0.462 Sum_probs=38.4
Q ss_pred cccCHHHHHHHHHHHHHhcc----cHHHHHHHhhhcchhhHHHHHH
Q 003898 52 AAWTREEEESFFTALRQVGK----NFEKITHRVRSKNKDQVRHYYY 93 (788)
Q Consensus 52 ~~Ws~eEkn~FFeaL~e~GK----dFEaI~~~i~~KnKdQVRhFYY 93 (788)
..||.+|...|=.||..|.+ .+++|+.+|..|+++||+.+|-
T Consensus 21 ~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~VpGKT~eEVk~hY~ 66 (74)
T 4eef_G 21 RPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVKGRTPEEVKKHYE 66 (74)
T ss_dssp -CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSCSSCHHHHHGGGC
T ss_pred CCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcCCCCHHHHHHHHH
Confidence 57999999999999999998 5999999999999999999884
No 40
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=94.32 E-value=0.27 Score=45.89 Aligned_cols=63 Identities=16% Similarity=0.290 Sum_probs=52.1
Q ss_pred ccCCCcccccccCHHHHHHHHHHHHHhcc-cHHHHHHHh----hhcchhhHHHHHHHHHHHHHhhcCCCc
Q 003898 43 SAKRPTRQWAAWTREEEESFFTALRQVGK-NFEKITHRV----RSKNKDQVRHYYYRLVRRMNKLLGPGL 107 (788)
Q Consensus 43 ~~kk~~R~w~~Ws~eEkn~FFeaL~e~GK-dFEaI~~~i----~~KnKdQVRhFYYrt~~rI~k~L~~~~ 107 (788)
...+++|....||.+|....-+++.+||. +...|+... ..++-.|++..|.+..++ ..+.|.+
T Consensus 9 ~~~~~rr~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~~RT~v~lKdRWrnllk~--~~~~p~~ 76 (121)
T 2juh_A 9 SELSQRRIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHT--ASIAPQQ 76 (121)
T ss_dssp CCCCCCCSSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCSSCCSHHHHHHHHHHHHH--HHTCSTT
T ss_pred ccccCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccCCCCHHHHHHHHHHHHhh--hccCCcc
Confidence 34556777789999999999999999997 999999997 578889999999888875 3345543
No 41
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=94.06 E-value=0.44 Score=44.47 Aligned_cols=72 Identities=15% Similarity=0.233 Sum_probs=55.2
Q ss_pred ccCCCcccccccCHHHHHHHHHHHHHhcc-cHHHHHHHh----hhcchhhHHHHHHHHHHHHHhhcCCCcccCCCChhh
Q 003898 43 SAKRPTRQWAAWTREEEESFFTALRQVGK-NFEKITHRV----RSKNKDQVRHYYYRLVRRMNKLLGPGLCLDAKNSKD 116 (788)
Q Consensus 43 ~~kk~~R~w~~Ws~eEkn~FFeaL~e~GK-dFEaI~~~i----~~KnKdQVRhFYYrt~~rI~k~L~~~~~iD~Kn~ke 116 (788)
...+.+|....||.+|.+..-+++.+||. +...|+... ..++-.|+|.-|.+..++- .+.|...-...-++|
T Consensus 23 ~~~~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~~RT~vdlKdRWrnllk~~--~~~p~~kr~~~~p~e 99 (122)
T 2roh_A 23 PDFGQRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLVHTA--SIAPQQRRGAPVPQE 99 (122)
T ss_dssp CCCCCCCCCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSCCCCHHHHHHHHHHHHHHH--HSCTTTCCCSSCCHH
T ss_pred cCcCCCCCCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhc--cCCccccCCCCCCHH
Confidence 34566778899999999999999999997 999999986 5788899999888887643 234433334444555
No 42
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=93.85 E-value=0.18 Score=44.04 Aligned_cols=73 Identities=16% Similarity=0.304 Sum_probs=55.5
Q ss_pred ccCHHHHHHHHHHHHHhcc-cHHHHHHH----hhhcchhhHHHHHHHHHHHHH--hhcCCCcccCCCChhhHHHHHHHHH
Q 003898 53 AWTREEEESFFTALRQVGK-NFEKITHR----VRSKNKDQVRHYYYRLVRRMN--KLLGPGLCLDAKNSKDTNAAMLRWW 125 (788)
Q Consensus 53 ~Ws~eEkn~FFeaL~e~GK-dFEaI~~~----i~~KnKdQVRhFYYrt~~rI~--k~L~~~~~iD~Kn~kev~~Am~~w~ 125 (788)
.||.+|....-+++.+||. +...|... +..++-.|++..|.+..++-. .-+.-+-.+ |.+.-+-+.++.-||
T Consensus 2 ~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~~RT~~~lKdrWrnllk~~~~~p~~~~~~~~-p~~~~~rv~~~~a~~ 80 (83)
T 2ckx_A 2 PFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQRRGEPV-PQDLLDRVLAAHAYW 80 (83)
T ss_dssp CCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHHHSCGGGCCSSCC-CHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccCCCCHHHHHHHHHHHHHhccCCcccccCCCC-CHHHHHHHHHHHHHH
Confidence 6999999999999999997 99999996 778999999999998887443 223334434 544444455677777
Q ss_pred H
Q 003898 126 S 126 (788)
Q Consensus 126 s 126 (788)
+
T Consensus 81 ~ 81 (83)
T 2ckx_A 81 S 81 (83)
T ss_dssp H
T ss_pred h
Confidence 5
No 43
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=93.59 E-value=0.13 Score=46.93 Aligned_cols=56 Identities=13% Similarity=0.235 Sum_probs=46.2
Q ss_pred ccCCCcccccccCHHHHHHHHHHHHHhcc-cHHHHHHHh----hhcchhhHHHHHHHHHHH
Q 003898 43 SAKRPTRQWAAWTREEEESFFTALRQVGK-NFEKITHRV----RSKNKDQVRHYYYRLVRR 98 (788)
Q Consensus 43 ~~kk~~R~w~~Ws~eEkn~FFeaL~e~GK-dFEaI~~~i----~~KnKdQVRhFYYrt~~r 98 (788)
...+++|....||.+|....-+++..||. +...|...+ ..++-.|++.-|.+..++
T Consensus 5 ~~~~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk~ 65 (105)
T 2aje_A 5 LEDPQRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHT 65 (105)
T ss_dssp ----CCCCCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTCCCHHHHHHHHHHHHHT
T ss_pred ccccCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhh
Confidence 45667777789999999999999999997 999999966 578889999998888774
No 44
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=91.52 E-value=0.14 Score=54.12 Aligned_cols=51 Identities=24% Similarity=0.498 Sum_probs=47.4
Q ss_pred ccccCHHHHHHHHHHHHHhcc-cHHHHHHHhhhcchhhHHHHHHHHHHHHHh
Q 003898 51 WAAWTREEEESFFTALRQVGK-NFEKITHRVRSKNKDQVRHYYYRLVRRMNK 101 (788)
Q Consensus 51 w~~Ws~eEkn~FFeaL~e~GK-dFEaI~~~i~~KnKdQVRhFYYrt~~rI~k 101 (788)
...|+..|-+.|..|+..||. |+++|+..|..|+.++|+.||--.|.|...
T Consensus 110 F~~W~rrdf~~Fi~a~~kyGr~~~~~IA~ev~~Kt~eEV~~Y~~vFw~ry~e 161 (304)
T 1ofc_X 110 FTAWTKRDFNQFIKANEKYGRDDIDNIAKDVEGKTPEEVIEYNAVFWERCTE 161 (304)
T ss_dssp CTTCCHHHHHHHHHHHHHHCTTCHHHHTTSSTTCCHHHHHHHHHHHHHHGGG
T ss_pred hcccCHHHHHHHHHHHHHhCHHHHHHHHHHhcCCCHHHHHHHHHHHHHhHHH
Confidence 457999999999999999996 999999999999999999999999999855
No 45
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=89.63 E-value=0.61 Score=41.87 Aligned_cols=52 Identities=21% Similarity=0.522 Sum_probs=48.5
Q ss_pred cccCHHHHHHHHHHHHHhcccHHHHHHHhh-----hcchhhHHHHHHHHHHHHHhhc
Q 003898 52 AAWTREEEESFFTALRQVGKNFEKITHRVR-----SKNKDQVRHYYYRLVRRMNKLL 103 (788)
Q Consensus 52 ~~Ws~eEkn~FFeaL~e~GKdFEaI~~~i~-----~KnKdQVRhFYYrt~~rI~k~L 103 (788)
..||.+|-+.-|+-.+++|-.|-.|+.+.. .++.++|+.=||...++|.+.=
T Consensus 31 ~~WTkEETd~Lf~L~~~fdlRW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~~~l~~~r 87 (93)
T 3hm5_A 31 DAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANVR 87 (93)
T ss_dssp TTBCHHHHHHHHHHHHHTTTCHHHHHHHSCTTTSCCCCHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHhCCCeeeehhhhccCCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 799999999999999999999999999995 6789999999999999998754
No 46
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=89.56 E-value=0.42 Score=46.14 Aligned_cols=58 Identities=14% Similarity=0.233 Sum_probs=47.2
Q ss_pred cccccccCHHHHHHHHHHHHHhc---ccHHHHHHH--hhhcchhhHHHHHHHHHHHHHhhcCC
Q 003898 48 TRQWAAWTREEEESFFTALRQVG---KNFEKITHR--VRSKNKDQVRHYYYRLVRRMNKLLGP 105 (788)
Q Consensus 48 ~R~w~~Ws~eEkn~FFeaL~e~G---KdFEaI~~~--i~~KnKdQVRhFYYrt~~rI~k~L~~ 105 (788)
+-....||..|.+.|+-|+..|| .+.|.|..- +..|+.++|+.||...|.+..+.+..
T Consensus 4 ~~~~~~~t~~E~r~fira~~kfG~~~~r~~~I~~da~L~~Ks~~~v~~y~~~f~~~c~~~~~~ 66 (211)
T 4b4c_A 4 RENIKGFSDAEIRRFIKSYKKFGGPLERLDAIARDAELVDKSETDLRRLGELVHNGCIKALKD 66 (211)
T ss_dssp ----CCSCHHHHHHHHHHHTTCSSGGGCHHHHHHHTTCTTSCHHHHHHHHHHHHHHHHHHHC-
T ss_pred cccCCCCCHHHHHHHHHHHHHHCCchhHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 34457899999999999999999 689999876 45899999999999888887787764
No 47
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=87.88 E-value=0.31 Score=41.06 Aligned_cols=51 Identities=20% Similarity=0.380 Sum_probs=41.5
Q ss_pred ccccccCHHHHHHHHHHHHHhcccHHHHHH---HhhhcchhhHHHHHHHHHHHH
Q 003898 49 RQWAAWTREEEESFFTALRQVGKNFEKITH---RVRSKNKDQVRHYYYRLVRRM 99 (788)
Q Consensus 49 R~w~~Ws~eEkn~FFeaL~e~GKdFEaI~~---~i~~KnKdQVRhFYYrt~~rI 99 (788)
|....||.||.+.-.+++++||+...+|.. ++..++--.+..=|+++++++
T Consensus 6 ~~r~~WT~EE~~~L~~gV~k~G~~W~~I~~~y~f~~~RT~VdLKdk~r~L~k~~ 59 (62)
T 1x58_A 6 SGRKDFTKEEVNYLFHGVKTMGNHWNSILWSFPFQKGRRAVDLAHKYHRLISGP 59 (62)
T ss_dssp CCSSSCCHHHHHHHHHHHHHHCSCHHHHHHHSCCCTTCCHHHHHHHHHHHHTCS
T ss_pred CCCCCCCHHHHHHHHHHHHHHhHhHHHHHHhCCCccCcccchHHHHHHHHHhcc
Confidence 455789999999999999999999999995 555677677777777766643
No 48
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=87.42 E-value=1.1 Score=40.34 Aligned_cols=54 Identities=20% Similarity=0.495 Sum_probs=49.1
Q ss_pred cccCHHHHHHHHHHHHHhcccHHHHHHHhh-----hcchhhHHHHHHHHHHHHHhhcCC
Q 003898 52 AAWTREEEESFFTALRQVGKNFEKITHRVR-----SKNKDQVRHYYYRLVRRMNKLLGP 105 (788)
Q Consensus 52 ~~Ws~eEkn~FFeaL~e~GKdFEaI~~~i~-----~KnKdQVRhFYYrt~~rI~k~L~~ 105 (788)
..||.+|...-|+-.++++..|--|..+.. .++.+++..=||...++|.+.=.+
T Consensus 31 ~~WT~eETd~LfdLc~~fdlRw~vI~DRy~~~~~~~RtvEdLK~RYY~V~~~l~~~r~~ 89 (93)
T 4iej_A 31 DAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANVRAV 89 (93)
T ss_dssp TTBCHHHHHHHHHHHHHTTTCHHHHHHHCCTTTSCCCCHHHHHHHHHHHHHHHHHHTC-
T ss_pred CCCCHHHHHHHHHHHHHcCCCeEEEeeccccCCCCCCCHHHHHHHHHHHHHHHHHhhCC
Confidence 579999999999999999999999999986 568899999999999999987665
No 49
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=86.20 E-value=3.7 Score=37.17 Aligned_cols=60 Identities=20% Similarity=0.393 Sum_probs=52.1
Q ss_pred cCCCcccccccCHHHHHHHHHHHHHhc---ccHHHHHHHhhhcchhhHHHHHHHHHHHHHhhc
Q 003898 44 AKRPTRQWAAWTREEEESFFTALRQVG---KNFEKITHRVRSKNKDQVRHYYYRLVRRMNKLL 103 (788)
Q Consensus 44 ~kk~~R~w~~Ws~eEkn~FFeaL~e~G---KdFEaI~~~i~~KnKdQVRhFYYrt~~rI~k~L 103 (788)
.+++--....||.+|-+.--.+.++-| +-|-.|+..+..|+..||++=||.+++=+.+..
T Consensus 26 ~~s~Ge~VvlWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L~Nks~nqV~~RFq~Lm~Lf~~~~ 88 (95)
T 1ug2_A 26 VSSTGEKVVLWTREADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFRELMQLFHTAC 88 (95)
T ss_dssp CCCCCCCCSSSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHSSCCHHHHHHHHHHHHHHHHHCS
T ss_pred ecCCCCEEEEeccccCHHHHHHHHhcCCChhHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHh
Confidence 445555668999999999999999997 599999999999999999999999999877754
No 50
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=80.87 E-value=0.8 Score=49.66 Aligned_cols=51 Identities=22% Similarity=0.465 Sum_probs=45.8
Q ss_pred ccccCHHHHHHHHHHHHHhccc-HHHHHHHhh-hcchhhHHHHHHHHHHHHHh
Q 003898 51 WAAWTREEEESFFTALRQVGKN-FEKITHRVR-SKNKDQVRHYYYRLVRRMNK 101 (788)
Q Consensus 51 w~~Ws~eEkn~FFeaL~e~GKd-FEaI~~~i~-~KnKdQVRhFYYrt~~rI~k 101 (788)
...|+.-|=+.|-.|...||.+ +++|+..|. .|+.++|+.|+--.|.|...
T Consensus 123 F~~WnrrDF~~FI~a~~kyGR~d~~~IA~ev~~~Kt~eEV~~Y~~vFw~Ry~E 175 (374)
T 2y9y_A 123 FTNWNKLEFRKFITVSGKYGRNSIQAIARELAPGKTLEEVRAYAKAFWSNIER 175 (374)
T ss_dssp CCCSCHHHHHHHHHHHHHHCTTCHHHHHSSCCCSSSHHHHHHHHHHHHHTCSS
T ss_pred hcccCHHHHHHHHHHHHHhCHhHHHHHHHHHccCCCHHHHHHHHHHHHHhhhh
Confidence 3479999999999999999965 999999999 99999999999999986543
No 51
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=76.07 E-value=1.1 Score=46.18 Aligned_cols=48 Identities=23% Similarity=0.461 Sum_probs=44.1
Q ss_pred ccccCHHHHHHHHHHHHHhccc------HHHHHHHhhhcchhhHHHHHHHHHHH
Q 003898 51 WAAWTREEEESFFTALRQVGKN------FEKITHRVRSKNKDQVRHYYYRLVRR 98 (788)
Q Consensus 51 w~~Ws~eEkn~FFeaL~e~GKd------FEaI~~~i~~KnKdQVRhFYYrt~~r 98 (788)
...||.+|-+.-.++.+++|.. +..|+.+|..++--|||+.|..++++
T Consensus 8 k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~LpGRT~nsIRnRw~~~L~~ 61 (246)
T 1ign_A 8 KASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSK 61 (246)
T ss_dssp CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTTSCHHHHHHHHHHTTGG
T ss_pred CCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcCCCCHHHHHHHHHHHHhh
Confidence 3689999999999999999875 99999999999999999999988765
No 52
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=65.89 E-value=9.1 Score=32.31 Aligned_cols=42 Identities=21% Similarity=0.427 Sum_probs=33.0
Q ss_pred ccccccCHHHHHHHHHHHHHhccc---HHHHHHHhhhc--chhhHHH
Q 003898 49 RQWAAWTREEEESFFTALRQVGKN---FEKITHRVRSK--NKDQVRH 90 (788)
Q Consensus 49 R~w~~Ws~eEkn~FFeaL~e~GKd---FEaI~~~i~~K--nKdQVRh 90 (788)
+..-.||.|.-..|-+|+.+.|.+ =.+|...|... +..||.-
T Consensus 5 k~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkS 51 (64)
T 1irz_A 5 KPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVAS 51 (64)
T ss_dssp CSSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHH
T ss_pred CCCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHH
Confidence 344789999999999999999954 34788888855 5677763
No 53
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=32.09 E-value=85 Score=24.03 Aligned_cols=53 Identities=13% Similarity=0.149 Sum_probs=39.6
Q ss_pred ccccCHHHHHHHHHHHHHhcccHHHHHHHhhhcchhhHHHHHHHHHHHHHhhcCC
Q 003898 51 WAAWTREEEESFFTALRQVGKNFEKITHRVRSKNKDQVRHYYYRLVRRMNKLLGP 105 (788)
Q Consensus 51 w~~Ws~eEkn~FFeaL~e~GKdFEaI~~~i~~KnKdQVRhFYYrt~~rI~k~L~~ 105 (788)
...++..++..|. .....|..++.|+..+.. +...|+...+|..++|.++|..
T Consensus 13 l~~L~~~~r~il~-l~~~~g~s~~eIA~~lgi-s~~tv~~~~~ra~~~l~~~l~~ 65 (70)
T 2o8x_A 13 IADLTTDQREALL-LTQLLGLSYADAAAVCGC-PVGTIRSRVARARDALLADAEP 65 (70)
T ss_dssp TTSSCHHHHHHHH-HHHTSCCCHHHHHHHHTS-CHHHHHHHHHHHHHHHHC----
T ss_pred HHhCCHHHHHHHH-HHHHcCCCHHHHHHHHCc-CHHHHHHHHHHHHHHHHHHhhc
Confidence 3456777776654 344679999999999975 7889999999999999999875
No 54
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=30.45 E-value=63 Score=33.57 Aligned_cols=53 Identities=9% Similarity=0.233 Sum_probs=43.8
Q ss_pred cccCHHHHHHHHHHHHHhc---ccHHHHHHH--hhhcchhhHHHHHHHHHHHHHhhcC
Q 003898 52 AAWTREEEESFFTALRQVG---KNFEKITHR--VRSKNKDQVRHYYYRLVRRMNKLLG 104 (788)
Q Consensus 52 ~~Ws~eEkn~FFeaL~e~G---KdFEaI~~~--i~~KnKdQVRhFYYrt~~rI~k~L~ 104 (788)
..||.-|.+.||-+|..|| ...|.|..- ++.|+.+.|+++|--.+.+-.+++.
T Consensus 4 ~~ltekEiR~l~Ra~~kfG~~~~R~e~I~~dA~L~~ks~~~i~~~~~~li~~c~~av~ 61 (270)
T 2xb0_X 4 GSIGESEVRALYKAILKFGNLKEILDELIADGTLPVKSFEKYGETYDEMMEAAKDCVH 61 (270)
T ss_dssp CCCCHHHHHHHHHHHHHHSSCTTCHHHHHHTTSSCCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHHHH
Confidence 4699999999999999999 688888654 3489999999999888776666654
No 55
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=27.95 E-value=94 Score=26.81 Aligned_cols=49 Identities=12% Similarity=0.239 Sum_probs=38.5
Q ss_pred cCHHHHHHHHHHHHHhcccHHHHHHHhhhcchhhHHHHHHHHHHHHHhhcCC
Q 003898 54 WTREEEESFFTALRQVGKNFEKITHRVRSKNKDQVRHYYYRLVRRMNKLLGP 105 (788)
Q Consensus 54 Ws~eEkn~FFeaL~e~GKdFEaI~~~i~~KnKdQVRhFYYrt~~rI~k~L~~ 105 (788)
=+..++..|. +...|..++.|+..+.. +...|+..++|..++|.++|..
T Consensus 110 L~~~~r~v~~--~~~~g~s~~EIA~~lgi-s~~tV~~~~~ra~~~Lr~~l~~ 158 (164)
T 3mzy_A 110 FSKFEKEVLT--YLIRGYSYREIATILSK-NLKSIDNTIQRIRKKSEEWIKE 158 (164)
T ss_dssp SCHHHHHHHH--HHTTTCCHHHHHHHHTC-CHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHH--HHHcCCCHHHHHHHHCC-CHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555544 56679999999999874 7889999999999999998864
No 56
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=25.36 E-value=1.4e+02 Score=25.12 Aligned_cols=22 Identities=18% Similarity=0.315 Sum_probs=18.3
Q ss_pred ccccCHHHHHHHHHHHHHhccc
Q 003898 51 WAAWTREEEESFFTALRQVGKN 72 (788)
Q Consensus 51 w~~Ws~eEkn~FFeaL~e~GKd 72 (788)
...|+.+|...|.++..+....
T Consensus 4 ~~~Wt~~Et~~Li~~~~e~~~~ 25 (86)
T 2ebi_A 4 AETWVQDETRSLIMFRRGMDGL 25 (86)
T ss_dssp SCCCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHH
Confidence 4789999999999999875443
No 57
>2hzd_A Transcriptional enhancer factor TEF-1; DNA-binding, helix-turn-helix, gene regulation; NMR {Homo sapiens}
Probab=22.96 E-value=33 Score=30.33 Aligned_cols=47 Identities=21% Similarity=0.275 Sum_probs=36.5
Q ss_pred CCCceEEE----EEecCcHHHHHHHh-hcCCCceeEEeecCccchhHHHHHHhhhhccC
Q 003898 316 QTPVKLKL----QLYPIDDGTRKALE-MDNHNPHLELTLSTRKKISSVLEHLNRKWGNA 369 (788)
Q Consensus 316 ~~~~KikL----QLFPide~Tr~~le-~~g~nP~LELTLs~rKkiSsvl~HLn~KWg~S 369 (788)
.+..||+| +|+-.|+=+..-+- ..| ..+.||.|||-+|.|.++|..-
T Consensus 27 ~g~~k~~ls~~gk~~gRNelIs~yI~~~tG-------k~RtrKQVSShiQvlk~~~~~~ 78 (82)
T 2hzd_A 27 CGRRKIILSDEGKMYGRNELIARYIKLRTG-------KTRTRKQVSSHIQVLARRKSRD 78 (82)
T ss_dssp SSCCCCCHHHHCCCCCTHHHHHHHHHHHHS-------CCCCSHHHHHHHHHHHHHHTTC
T ss_pred CCccceeecccccccchhHHHHHHHHHHHc-------ccCCccchhHHHHHHHHHHhhh
Confidence 34445555 57888888887776 566 6899999999999999998653
No 58
>3fap_B FRAP, FKBP12-rapamycin associated protein; complex, gene therapy, cell cycle; HET: ARD; 1.85A {Homo sapiens} SCOP: a.24.7.1 PDB: 2fap_B* 2rse_B 1nsg_B* 4fap_B* 1aue_A 2gaq_A 1fap_B*
Probab=21.71 E-value=1.1e+02 Score=27.29 Aligned_cols=29 Identities=28% Similarity=0.396 Sum_probs=22.6
Q ss_pred cHHHHHHHhhhcc---hhhHHHHHHHHHHHHH
Q 003898 72 NFEKITHRVRSKN---KDQVRHYYYRLVRRMN 100 (788)
Q Consensus 72 dFEaI~~~i~~Kn---KdQVRhFYYrt~~rI~ 100 (788)
-++-+.+|..++| ..|.-..||..++||+
T Consensus 63 A~~~~~~y~~t~~~~~l~qAWdiY~~V~~ri~ 94 (94)
T 3fap_B 63 AQEWCRKYMKSGNVKDLTQAWDLYYHVFRRIS 94 (94)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhCChhhHHHHHHHHHHHHhccC
Confidence 4566666777665 5799999999999984
No 59
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=21.31 E-value=1.3e+02 Score=23.78 Aligned_cols=46 Identities=11% Similarity=0.125 Sum_probs=36.3
Q ss_pred cccCHHHHHHHHHHHHHhcccHHHHHHHhhhcchhhHHHHHHHHHHHHH
Q 003898 52 AAWTREEEESFFTALRQVGKNFEKITHRVRSKNKDQVRHYYYRLVRRMN 100 (788)
Q Consensus 52 ~~Ws~eEkn~FFeaL~e~GKdFEaI~~~i~~KnKdQVRhFYYrt~~rI~ 100 (788)
..++..|++.|.- + ..|...+.|+..+.. +...|+.+.++..+++.
T Consensus 15 ~~L~~~e~~vl~l-~-~~g~s~~eIA~~l~i-s~~tV~~~~~r~~~kl~ 60 (79)
T 1x3u_A 15 QTLSERERQVLSA-V-VAGLPNKSIAYDLDI-SPRTVEVHRANVMAKMK 60 (79)
T ss_dssp HHHCHHHHHHHHH-H-TTTCCHHHHHHHTTS-CHHHHHHHHHHHHHHTT
T ss_pred HhCCHHHHHHHHH-H-HcCCCHHHHHHHHCc-CHHHHHHHHHHHHHHHc
Confidence 4577888888765 5 789999999999975 66788888888877654
No 60
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=26.52 E-value=20 Score=30.97 Aligned_cols=46 Identities=22% Similarity=0.507 Sum_probs=39.6
Q ss_pred ccccCHHHHHHHHHHHHHhcc---cHHHHHHHhhhcchhhHHHHHHHHHH
Q 003898 51 WAAWTREEEESFFTALRQVGK---NFEKITHRVRSKNKDQVRHYYYRLVR 97 (788)
Q Consensus 51 w~~Ws~eEkn~FFeaL~e~GK---dFEaI~~~i~~KnKdQVRhFYYrt~~ 97 (788)
.-.||.+|-+.--.+.++-|- -|-.|+..+ .|+.+||-+=|-.+++
T Consensus 14 vvlWTReeDR~IL~~cq~~G~s~~tfa~iA~~L-nks~~QV~~RF~~Lm~ 62 (70)
T 2lr8_A 14 IILWTRNDDRVILLECQKRGPSSKTFAYLAAKL-DKNPNQVSERFQQLMK 62 (70)
Confidence 467999999999999999984 999999999 7999999877666655
No 61
>2npu_A FKBP12-rapamycin complex-associated protein; four-helix bundle, transferase; NMR {Homo sapiens}
Probab=20.55 E-value=1.2e+02 Score=28.39 Aligned_cols=26 Identities=31% Similarity=0.523 Sum_probs=17.7
Q ss_pred HHHHhhhcch---hhHHHHHHHHHHHHHh
Q 003898 76 ITHRVRSKNK---DQVRHYYYRLVRRMNK 101 (788)
Q Consensus 76 I~~~i~~KnK---dQVRhFYYrt~~rI~k 101 (788)
+.+|..+++. .|.-..||+.++||.|
T Consensus 97 ~~~y~~t~d~~~lnqAWd~Y~~Vf~rI~k 125 (126)
T 2npu_A 97 CRKYMKSGNVKDLTQAWDLYYHVFRRISK 125 (126)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHhCChhHHHHHHHHHHHHHHHHhc
Confidence 3333334543 4888899999999875
Done!