BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 003899
(788 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 45/150 (30%), Positives = 66/150 (44%), Gaps = 28/150 (18%)
Query: 525 IRSLNRLH---ISRCPRLLSL-----VTDEEHDQQQPESPYRLRF-----LELKIFIYDL 571
I SLNRL I CP L L TD + Q + LR L I +L
Sbjct: 146 IASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANL 205
Query: 572 ENLQSL-----------PAGLHNLRHLQKIWISKCPNLESFPEEGLPSAKLTELMIWRCE 620
+NL+SL PA +H+L L+++ + C L ++P A L L++ C
Sbjct: 206 QNLKSLKIRNSPLSALGPA-IHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCS 264
Query: 621 NLKALP---NSMSSLLRLGIIGCPSLESFP 647
NL LP + ++ L +L + GC +L P
Sbjct: 265 NLLTLPLDIHRLTQLEKLDLRGCVNLSRLP 294
Score = 35.0 bits (79), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 48/104 (46%), Gaps = 4/104 (3%)
Query: 112 QMLMNLPRLRVFSLHGYSNIIELPNEIENLKHLRFLNLSRTSIQILPESINSLYNLNTIL 171
Q L+NL LR+ ++ I LP I NL++L+ L + + + L +I+ L L +
Sbjct: 180 QGLVNLQSLRL----EWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELD 235
Query: 172 LEDCYQLKKLCNDMGNLKKLRHLKSSNVDSLEEMPKGFGKLTCL 215
L C L+ G L+ L + +L +P +LT L
Sbjct: 236 LRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQL 279
Score = 33.9 bits (76), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 50/196 (25%), Positives = 77/196 (39%), Gaps = 40/196 (20%)
Query: 560 RFLELKIFIYDLENLQSLPAGLHNLRHLQKIWISKCPNLESFPEEGLPSAK-------LT 612
+F L+ L++LPA + +L L+++ I CP L PE L S L
Sbjct: 125 QFAGLETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEP-LASTDASGEHQGLV 183
Query: 613 ELMIWRCE--NLKALPNSMSSLLRLGIIGCPSLESFPEDGFPTNLQSLEVRDLKITKPLL 670
L R E +++LP S+++L NL+SL++R+ ++ L
Sbjct: 184 NLQSLRLEWTGIRSLPASIANL--------------------QNLKSLKIRNSPLSA--L 221
Query: 671 EWGLNRFTSLRNLSIGG-----GYPDLLSSPPFPASLTELWISDMPDLECLSSISENLTS 725
++ L L + G YP + A L L + D +L L LT
Sbjct: 222 GPAIHHLPKLEELDLRGCTALRNYPPIFGG---RAPLKRLILKDCSNLLTLPLDIHRLTQ 278
Query: 726 LEFLYLIDCPKLKYFP 741
LE L L C L P
Sbjct: 279 LEKLDLRGCVNLSRLP 294
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 35.0 bits (79), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 48/94 (51%), Gaps = 11/94 (11%)
Query: 96 VNLSNYRINYLAWSVLQMLMNLPRLRVFSLHGYSNIIELPNEIENLKHLRFLNLSRTSIQ 155
++LSN +I ++ ++ + L RL L+G S + ELP EI+NL +LR L+LS +
Sbjct: 229 LDLSNLQIFNISANIFKYDF-LTRLY---LNGNS-LTELPAEIKNLSNLRVLDLSHNRLT 283
Query: 156 ILPESINSLYNLNTILLEDC------YQLKKLCN 183
LP + S + L D ++ LCN
Sbjct: 284 SLPAELGSCFQLKYFYFFDNMVTTLPWEFGNLCN 317
>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 34.7 bits (78), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 66/246 (26%), Positives = 115/246 (46%), Gaps = 36/246 (14%)
Query: 96 VNLSNYRINYLAWSVLQMLMNLPRLRVFSLHGYSNIIELPNEIENLKHLRFLNLSRTSIQ 155
++LSN RI Y++ S LQ +NL L V + +G + I E + +L L L+LS +
Sbjct: 31 LDLSNNRITYISNSDLQRCVNLQAL-VLTSNGINTIEE--DSFSSLGSLEHLDLSYNYLS 87
Query: 156 ILPES----INSLYNLNTILLEDCYQLKKLCNDMGNLKKLRHLKSSNVDSLEEMP-KGFG 210
L S ++SL LN LL + Y+ + +L KL+ L+ N+D+ ++ K F
Sbjct: 88 NLSSSWFKPLSSLTFLN--LLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFA 145
Query: 211 KLTCL--LTLGTFVVGKDGGSGLRELKSLTH--LQGTLQISKLENVKDVGDACE------ 260
LT L L + + L+ +++++H L I LE DV + E
Sbjct: 146 GLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRD 205
Query: 261 --------AQLNSKENLQALLLKWSTRDVQNLDQCEFETHVLSVLKPHQDVQEL-----T 307
++L++ E +L+ K++ R+V+ D+ F+ V+ +L + EL T
Sbjct: 206 TDLDTFHFSELSTGET-NSLIKKFTFRNVKITDESLFQ--VMKLLNQISGLLELEFDDCT 262
Query: 308 ITGYGG 313
+ G G
Sbjct: 263 LNGVGN 268
>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
pdb|2Z80|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 353
Score = 34.7 bits (78), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 41/125 (32%), Positives = 65/125 (52%), Gaps = 10/125 (8%)
Query: 96 VNLSNYRINYLAWSVLQMLMNLPRLRVFSLHGYSNIIELPNEIENLKHLRFLNLSRTSIQ 155
++LSN RI Y++ S LQ +NL L V + +G + I E + +L L L+LS +
Sbjct: 57 LDLSNNRITYISNSDLQRCVNLQAL-VLTSNGINTIEE--DSFSSLGSLEHLDLSYNYLS 113
Query: 156 ILPES----INSLYNLNTILLEDCYQLKKLCNDMGNLKKLRHLKSSNVDSLEEMP-KGFG 210
L S ++SL LN LL + Y+ + +L KL+ L+ N+D+ ++ K F
Sbjct: 114 NLSSSWFKPLSSLTFLN--LLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFA 171
Query: 211 KLTCL 215
LT L
Sbjct: 172 GLTFL 176
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 33.9 bits (76), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 37/134 (27%), Positives = 71/134 (52%), Gaps = 12/134 (8%)
Query: 560 RFLELKIFIYDLENLQSLPAGL-HNLRHLQKIWISKCPNLESFPEEGLPS-AKLTELMIW 617
R +L++ + LQ+LPAG+ L++L+ +W++ L++ P L EL +
Sbjct: 59 RLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTD-NKLQALPIGVFDQLVNLAELRLD 117
Query: 618 RCENLKALP----NSMSSLLRLGIIGCPSLESFPEDGFP--TNLQSLEVRDLKITKPLLE 671
R + LK+LP +S++ L L +G L+S P+ F T+L+ L + + ++ K + E
Sbjct: 118 RNQ-LKSLPPRVFDSLTKLTYLS-LGYNELQSLPKGVFDKLTSLKELRLYNNQL-KRVPE 174
Query: 672 WGLNRFTSLRNLSI 685
++ T L+ L +
Sbjct: 175 GAFDKLTELKTLKL 188
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 47/88 (53%), Gaps = 4/88 (4%)
Query: 87 VEHLRTFLPVNLSNYRINYLAWSVLQMLMNLPRLRVFSLHGYSNIIELPNEIENLKHLRF 146
V HL +NLS I+ + S+L L+ L +++ G ++E P L +LR
Sbjct: 244 VRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVG--GQLAVVE-PYAFRGLNYLRV 300
Query: 147 LNLSRTSIQILPESI-NSLYNLNTILLE 173
LN+S + L ES+ +S+ NL T++L+
Sbjct: 301 LNVSGNQLTTLEESVFHSVGNLETLILD 328
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 42/172 (24%), Positives = 78/172 (45%), Gaps = 12/172 (6%)
Query: 49 MDDTLEGENRQKFCQSLRHFSYICGESDGEKRLQSVCDVEHLRTFLPVNLSNYRINYLAW 108
+D + + K Q +++ + + G +L + ++ L + L+ ++ L
Sbjct: 43 IDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHDISALKELTNLTYLILTGNQLQSLPN 102
Query: 109 SVLQMLMNLPRLRVFSLHGYSNIIELPNEI-ENLKHLRFLNLSRTSIQILPESI-NSLYN 166
V L NL L + + + LP+ + + L +L +LNL+ +Q LP+ + + L N
Sbjct: 103 GVFDKLTNLKELVLVE----NQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTN 158
Query: 167 LNTILLEDCYQLKKLCNDMGNLKKLRHLKSSNV--DSLEEMPKG-FGKLTCL 215
L + L QL+ L G KL LK + + L+ +P G F +LT L
Sbjct: 159 LTELDLS-YNQLQSLPE--GVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSL 207
>pdb|4AY9|X Chain X, Structure Of Follicle-Stimulating Hormone In Complex With
The Entire Ectodomain Of Its Receptor
pdb|4AY9|Y Chain Y, Structure Of Follicle-Stimulating Hormone In Complex With
The Entire Ectodomain Of Its Receptor
pdb|4AY9|Z Chain Z, Structure Of Follicle-Stimulating Hormone In Complex With
The Entire Ectodomain Of Its Receptor
Length = 350
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 39/62 (62%), Gaps = 2/62 (3%)
Query: 113 MLMNLPRLRVFSLHGYSNIIEL-PNEIENLKHLRFLNLSRTSIQILPESINSLYNLNTIL 171
+ NLP+L + +N++ + P +NL +L++L +S T I+ LP+ ++ +++L +L
Sbjct: 74 VFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPD-VHKIHSLQKVL 132
Query: 172 LE 173
L+
Sbjct: 133 LD 134
>pdb|1ZOY|A Chain A, Crystal Structure Of Mitochondrial Respiratory Complex Ii
From Porcine Heart At 2.4 Angstroms
pdb|1ZP0|A Chain A, Crystal Structure Of Mitochondrial Respiratory Complex Ii
Bound With 3-Nitropropionate And
2-Thenoyltrifluoroacetone
pdb|3ABV|A Chain A, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With
N-Biphenyl-3-Yl-2-Trifluoromethyl-Benzamide
pdb|3AE1|A Chain A, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With N-Phenyl-2-(Trifluoromethyl)-Benzamide
pdb|3AE2|A Chain A, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With 2-Hydroxy-N-Phenyl-Benzamide
pdb|3AE3|A Chain A, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With 2-Nitro-N-Phenyl-Benzamide
pdb|3AE4|A Chain A, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With 2-Iodo-N-Methyl-Benzamide
pdb|3AE5|A Chain A, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With 2-Methyl-N-(3-Isopropoxy-Phenyl)-Benzamide
pdb|3AE6|A Chain A, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With N-(3-Isopropoxy-Phenyl)-Phthalamicacid
pdb|3AE7|A Chain A, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With 2-Iodo-N-(3-Isopropoxy-Phenyl)-Benzamide
pdb|3AE8|A Chain A, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With
N-(3-Isopropoxy-Phenyl)-2-Trifluoromethylbenzamide
pdb|3AE9|A Chain A, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With
N-(3-Pentafluorophenyloxy-Phenyl)-2-Trifluoromethyl-
Benzamide
pdb|3AEA|A Chain A, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With
N-(3-Dimethylaminomethyl-Phenyl)-2-Trifluoromethyl-
Benzamide
pdb|3AEB|A Chain A, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With
N-(3-Phenoxy-Phenyl)-2-Trifluoromethyl-Benzamide
pdb|3AEC|A Chain A, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With 2-Iodo-N-(1-Methylethyl)-Benzamid
pdb|3AED|A Chain A, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With 2-Iodo-N-Phenyl-Benzamide
pdb|3AEE|A Chain A, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With Atpenin A5
pdb|3AEF|A Chain A, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii With An Empty Quinone-Binding Pocket
pdb|3AEG|A Chain A, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With N-Biphenyl-3-Yl-2-Iodo-Benzamide
pdb|3SFD|A Chain A, Crystal Structure Of Porcine Mitochondrial Respiratory
Complex Ii Bound With Oxaloacetate And Pentachlorophenol
pdb|3SFE|A Chain A, Crystal Structure Of Porcine Mitochondrial Respiratory
Complex Ii Bound With Oxaloacetate And Thiabendazole
Length = 622
Score = 31.2 bits (69), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 37/74 (50%), Gaps = 6/74 (8%)
Query: 138 IENLKHLRFLNLS------RTSIQILPESINSLYNLNTILLEDCYQLKKLCNDMGNLKKL 191
+ NL LRF N + R S+Q +S +++ + ++L E C ++ +L D+ +LK
Sbjct: 451 VMNLDKLRFANGTIRTSELRLSMQKSMQSHAAVFRVGSVLQEGCEKILRLYGDLQHLKTF 510
Query: 192 RHLKSSNVDSLEEM 205
N D +E +
Sbjct: 511 DRGMVWNTDLVETL 524
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 31.2 bits (69), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 60/138 (43%), Gaps = 20/138 (14%)
Query: 470 IDLSSLKSVHLAYVANEVVLAGLFEQGLPKLENLVIVEVREQAYLWQSETRL-LQDIRSL 528
I+ +S S+ Y+ + L + L KLENL +++ L L+++R L
Sbjct: 318 INAASFPSLRDLYIKGNMRKLDLGTRCLEKLENLQKLDLSHSDIEASDCCNLQLKNLRHL 377
Query: 529 NRLHIS-------------RCPRLLSLVTDEEH-DQQQPESPYR----LRFLELKIFIYD 570
L++S CP+L L H + P SP++ LR L L + D
Sbjct: 378 QYLNLSYNEPLGLEDQAFKECPQLELLDVAFTHLHVKAPHSPFQNLHLLRVLNLSHCLLD 437
Query: 571 LENLQSLPAGLHNLRHLQ 588
N Q L AGL +LRHL
Sbjct: 438 TSN-QHLLAGLQDLRHLN 454
>pdb|1XWD|C Chain C, Crystal Structure Of Human Follicle Stimulating Hormone
Complexed With Its Receptor
pdb|1XWD|F Chain F, Crystal Structure Of Human Follicle Stimulating Hormone
Complexed With Its Receptor
Length = 252
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 38/59 (64%), Gaps = 2/59 (3%)
Query: 116 NLPRLRVFSLHGYSNIIEL-PNEIENLKHLRFLNLSRTSIQILPESINSLYNLNTILLE 173
NLP+L + +N++ + P +NL +L++L +S T I+ LP+ ++ +++L +LL+
Sbjct: 77 NLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPD-VHKIHSLQKVLLD 134
>pdb|3SOP|A Chain A, Crystal Structure Of Human Septin 3 Gtpase Domain
pdb|3SOP|B Chain B, Crystal Structure Of Human Septin 3 Gtpase Domain
Length = 270
Score = 30.8 bits (68), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Query: 255 VGDACEAQLNSKENLQALLLKWSTRDVQNLDQCEFETHVLSVLKPH-QDVQELT 307
VG E Q+N K L W +V+NL+ CEF V++ H QD++E+T
Sbjct: 205 VGSDKEYQVNGKRVL-GRKTPWGIIEVENLNHCEFALLRDFVIRTHLQDLKEVT 257
>pdb|2Y8N|A Chain A, Crystal Structure Of Glycyl Radical Enzyme
pdb|2Y8N|C Chain C, Crystal Structure Of Glycyl Radical Enzyme
pdb|2YAJ|A Chain A, Crystal Structure Of Glycyl Radical Enzyme With Bound
Substrate
pdb|2YAJ|C Chain C, Crystal Structure Of Glycyl Radical Enzyme With Bound
Substrate
Length = 897
Score = 30.4 bits (67), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 53/123 (43%), Gaps = 11/123 (8%)
Query: 626 PNSMSSLLRLGIIGCPSLESFPEDGFPTN---LQSLEVRDLKIT------KPLLEWGLNR 676
P S S+ RLG + P E EDG T+ ++ LE+ +KIT + G+
Sbjct: 342 PQSGLSIGRLGQVLQPFYEKDVEDGIMTDEEVIELLELYRIKITCIECFASAGVSGGVLS 401
Query: 677 FTSLRNLSIGG-GYPDLLSSPPFPASLTELWISDMPDLECLSSISENLTSLEFLY-LIDC 734
+ NLS+GG Y L + P + E + + LS + + T +FL C
Sbjct: 402 GNTFNNLSLGGQNYDGLSAVTPLEYLIVEAGMRNQTPQPTLSVLYDEKTPEDFLMKAASC 461
Query: 735 PKL 737
KL
Sbjct: 462 TKL 464
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 30.4 bits (67), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Query: 121 RVFSLHGYSNIIELPNEIENLKHLRFLNLSRTSIQILP-ESINSLYNLNTILLED 174
R+ +LH I N ++L+HL L LSR I+ + + N L NLNT+ L D
Sbjct: 67 RLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFD 121
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 29.3 bits (64), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 48/94 (51%), Gaps = 8/94 (8%)
Query: 127 GYSNIIELPNEIEN-LKHLRFLNLSRTSIQILPESI-NSLYNLNTILLEDCYQLKKLCND 184
G + + LPN + N L L +LNLS +Q LP + + L L + L + QL+ L +
Sbjct: 60 GGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELAL-NTNQLQSLPD- 117
Query: 185 MGNLKKLRHLKSSNV--DSLEEMPKG-FGKLTCL 215
G KL LK + + L+ +P G F +LT L
Sbjct: 118 -GVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSL 150
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.415
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,988,199
Number of Sequences: 62578
Number of extensions: 938978
Number of successful extensions: 1808
Number of sequences better than 100.0: 30
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 28
Number of HSP's that attempted gapping in prelim test: 1775
Number of HSP's gapped (non-prelim): 59
length of query: 788
length of database: 14,973,337
effective HSP length: 107
effective length of query: 681
effective length of database: 8,277,491
effective search space: 5636971371
effective search space used: 5636971371
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)