Query 003899
Match_columns 788
No_of_seqs 464 out of 3653
Neff 10.5
Searched_HMMs 46136
Date Thu Mar 28 14:00:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003899.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003899hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 4.7E-39 1E-43 385.8 28.2 525 88-760 69-607 (968)
2 PLN00113 leucine-rich repeat r 100.0 7.2E-38 1.6E-42 375.5 26.7 505 62-667 68-585 (968)
3 PLN03210 Resistant to P. syrin 100.0 8.3E-29 1.8E-33 296.3 24.3 427 7-542 470-909 (1153)
4 KOG4658 Apoptotic ATPase [Sign 100.0 5.8E-29 1.3E-33 280.9 14.0 216 1-225 452-677 (889)
5 KOG0472 Leucine-rich repeat pr 99.9 1.4E-31 3.1E-36 258.0 -14.3 119 571-735 421-539 (565)
6 KOG0472 Leucine-rich repeat pr 99.9 9.9E-30 2.2E-34 245.3 -17.1 459 85-621 65-540 (565)
7 KOG4194 Membrane glycoprotein 99.9 2.8E-25 6.1E-30 224.4 6.5 263 302-617 174-447 (873)
8 KOG4194 Membrane glycoprotein 99.9 1.5E-25 3.3E-30 226.4 2.9 359 87-534 77-447 (873)
9 PLN03210 Resistant to P. syrin 99.9 6.2E-22 1.3E-26 237.4 23.3 345 262-648 553-911 (1153)
10 KOG0618 Serine/threonine phosp 99.9 6.9E-26 1.5E-30 241.3 -9.5 128 450-621 358-488 (1081)
11 KOG0618 Serine/threonine phosp 99.9 2.4E-25 5.3E-30 237.2 -6.8 108 113-223 40-147 (1081)
12 KOG0444 Cytoskeletal regulator 99.9 1.1E-24 2.3E-29 221.6 -5.2 366 116-623 5-376 (1255)
13 KOG0444 Cytoskeletal regulator 99.9 4.7E-24 1E-28 217.1 -3.6 150 64-223 8-160 (1255)
14 PRK15387 E3 ubiquitin-protein 99.6 5.7E-15 1.2E-19 164.2 14.2 211 118-439 201-411 (788)
15 KOG4237 Extracellular matrix p 99.6 2.4E-17 5.2E-22 160.1 -4.3 110 108-220 80-195 (498)
16 PRK15387 E3 ubiquitin-protein 99.5 8.2E-14 1.8E-18 155.1 16.0 133 587-735 324-456 (788)
17 KOG4658 Apoptotic ATPase [Sign 99.5 1.7E-14 3.7E-19 164.2 8.1 261 83-366 518-788 (889)
18 KOG0617 Ras suppressor protein 99.5 4.7E-16 1E-20 133.4 -5.6 107 115-223 30-137 (264)
19 KOG0617 Ras suppressor protein 99.5 7E-16 1.5E-20 132.4 -4.9 149 63-223 33-183 (264)
20 KOG4237 Extracellular matrix p 99.5 4E-15 8.6E-20 144.9 -2.3 287 59-387 63-355 (498)
21 PRK15370 E3 ubiquitin-protein 99.5 1.8E-13 3.9E-18 153.5 10.3 227 118-427 178-405 (754)
22 PRK15370 E3 ubiquitin-protein 99.4 1E-12 2.2E-17 147.5 12.5 157 586-758 263-426 (754)
23 cd00116 LRR_RI Leucine-rich re 99.1 2.9E-11 6.3E-16 126.4 1.9 263 85-387 20-316 (319)
24 cd00116 LRR_RI Leucine-rich re 99.1 3E-11 6.4E-16 126.3 0.8 271 109-419 14-318 (319)
25 PF14580 LRR_9: Leucine-rich r 99.0 3.6E-10 7.7E-15 102.9 5.4 132 82-225 13-152 (175)
26 COG4886 Leucine-rich repeat (L 98.9 1.5E-09 3.3E-14 116.7 5.8 182 113-364 111-293 (394)
27 PF14580 LRR_9: Leucine-rich r 98.9 6.7E-10 1.5E-14 101.2 1.2 108 113-225 14-125 (175)
28 PRK15386 type III secretion pr 98.8 1.6E-08 3.5E-13 103.4 10.6 162 582-763 49-216 (426)
29 KOG0532 Leucine-rich repeat (L 98.8 2.3E-10 5.1E-15 117.4 -3.7 194 116-358 73-270 (722)
30 KOG4341 F-box protein containi 98.8 1.7E-10 3.7E-15 114.1 -5.3 68 472-541 163-231 (483)
31 KOG0532 Leucine-rich repeat (L 98.7 3.2E-10 6.9E-15 116.4 -4.9 183 108-337 88-271 (722)
32 KOG4341 F-box protein containi 98.7 2.1E-10 4.6E-15 113.4 -6.6 83 584-666 345-439 (483)
33 KOG1259 Nischarin, modulator o 98.6 8.8E-09 1.9E-13 97.4 1.6 127 87-225 283-411 (490)
34 PF13855 LRR_8: Leucine rich r 98.6 3E-08 6.5E-13 74.0 4.1 57 118-175 1-59 (61)
35 PRK15386 type III secretion pr 98.6 1.3E-07 2.8E-12 96.9 9.5 135 608-757 51-187 (426)
36 KOG3207 Beta-tubulin folding c 98.6 1.2E-08 2.5E-13 102.0 1.7 209 139-417 118-335 (505)
37 KOG3207 Beta-tubulin folding c 98.5 6.8E-09 1.5E-13 103.6 -2.4 175 324-511 144-339 (505)
38 COG4886 Leucine-rich repeat (L 98.5 7.9E-08 1.7E-12 103.4 4.3 126 85-220 113-239 (394)
39 PF13855 LRR_8: Leucine rich r 98.5 1.3E-07 2.7E-12 70.6 3.3 58 142-200 1-60 (61)
40 KOG1259 Nischarin, modulator o 98.4 3.8E-08 8.1E-13 93.2 -0.3 120 116-240 282-404 (490)
41 PLN03150 hypothetical protein; 98.4 3.6E-07 7.9E-12 102.9 7.1 101 119-220 419-522 (623)
42 PLN03150 hypothetical protein; 98.4 4.8E-07 1E-11 101.9 8.1 110 90-206 420-532 (623)
43 KOG0531 Protein phosphatase 1, 98.3 9.2E-08 2E-12 102.9 -0.4 107 113-224 90-197 (414)
44 KOG2120 SCF ubiquitin ligase, 98.3 1.9E-08 4.2E-13 95.2 -6.5 158 166-361 186-351 (419)
45 KOG2120 SCF ubiquitin ligase, 98.2 2E-08 4.2E-13 95.1 -6.9 104 653-757 260-373 (419)
46 PF12799 LRR_4: Leucine Rich r 98.2 1.5E-06 3.3E-11 58.9 3.4 38 143-181 2-39 (44)
47 KOG1909 Ran GTPase-activating 98.2 3.1E-07 6.8E-12 89.4 -0.3 90 110-200 22-131 (382)
48 PF12799 LRR_4: Leucine Rich r 98.2 2.4E-06 5.1E-11 58.0 3.7 41 118-159 1-41 (44)
49 KOG1909 Ran GTPase-activating 98.1 6.3E-07 1.4E-11 87.4 -0.1 91 83-175 25-130 (382)
50 KOG0531 Protein phosphatase 1, 98.0 9.3E-07 2E-11 95.1 -1.3 107 115-226 69-175 (414)
51 KOG4579 Leucine-rich repeat (L 98.0 2.4E-06 5.3E-11 71.6 1.1 97 109-208 44-141 (177)
52 KOG4579 Leucine-rich repeat (L 97.7 3.6E-06 7.8E-11 70.6 -1.5 102 118-222 27-132 (177)
53 KOG1859 Leucine-rich repeat pr 97.7 2.9E-06 6.3E-11 90.4 -3.6 107 113-225 182-291 (1096)
54 KOG2982 Uncharacterized conser 97.6 2.1E-05 4.6E-10 75.1 0.7 86 114-200 67-157 (418)
55 KOG1859 Leucine-rich repeat pr 97.5 2.1E-06 4.6E-11 91.4 -7.2 117 119-241 165-282 (1096)
56 KOG3665 ZYG-1-like serine/thre 97.5 0.00012 2.6E-09 82.4 6.0 83 86-175 146-230 (699)
57 KOG1644 U2-associated snRNP A' 97.5 0.00016 3.5E-09 65.4 5.2 102 119-224 43-151 (233)
58 KOG3665 ZYG-1-like serine/thre 97.5 6.5E-05 1.4E-09 84.5 2.9 81 143-225 123-207 (699)
59 KOG1947 Leucine rich repeat pr 97.3 1E-05 2.2E-10 90.1 -5.5 61 704-764 380-444 (482)
60 KOG2982 Uncharacterized conser 97.3 3.3E-05 7.1E-10 73.8 -1.2 101 119-223 46-156 (418)
61 COG5238 RNA1 Ran GTPase-activa 97.0 0.00027 5.9E-09 66.8 1.5 92 113-206 25-136 (388)
62 KOG1644 U2-associated snRNP A' 96.9 0.0012 2.6E-08 59.9 4.4 102 120-226 21-126 (233)
63 KOG1947 Leucine rich repeat pr 96.9 8.2E-05 1.8E-09 82.8 -3.9 39 702-740 403-443 (482)
64 KOG2123 Uncharacterized conser 96.9 8.1E-05 1.7E-09 70.5 -3.3 100 117-220 18-124 (388)
65 KOG2739 Leucine-rich acidic nu 96.8 0.00066 1.4E-08 64.4 2.0 106 114-224 39-154 (260)
66 KOG2123 Uncharacterized conser 96.7 0.00017 3.6E-09 68.5 -2.3 100 86-195 17-123 (388)
67 PF00560 LRR_1: Leucine Rich R 96.5 0.0011 2.3E-08 37.2 0.9 19 144-162 2-20 (22)
68 KOG2739 Leucine-rich acidic nu 95.9 0.0053 1.2E-07 58.5 2.7 95 113-209 60-162 (260)
69 PF00560 LRR_1: Leucine Rich R 95.5 0.0063 1.4E-07 34.1 1.0 21 166-187 1-21 (22)
70 KOG0473 Leucine-rich repeat pr 95.1 0.00098 2.1E-08 61.7 -4.8 86 113-200 37-122 (326)
71 PF13306 LRR_5: Leucine rich r 95.1 0.046 9.9E-07 47.9 5.9 102 83-198 7-112 (129)
72 COG5238 RNA1 Ran GTPase-activa 94.6 0.017 3.8E-07 55.0 1.7 89 84-175 26-130 (388)
73 PF13504 LRR_7: Leucine rich r 94.5 0.023 4.9E-07 29.4 1.3 14 144-157 3-16 (17)
74 KOG0473 Leucine-rich repeat pr 94.4 0.0027 5.9E-08 58.9 -4.0 88 131-220 30-118 (326)
75 PF13306 LRR_5: Leucine rich r 92.9 0.15 3.3E-06 44.5 4.6 100 113-220 7-110 (129)
76 PF13504 LRR_7: Leucine rich r 92.8 0.069 1.5E-06 27.6 1.3 17 118-135 1-17 (17)
77 KOG3864 Uncharacterized conser 92.5 0.018 4E-07 52.6 -1.8 85 654-740 102-192 (221)
78 smart00370 LRR Leucine-rich re 92.1 0.12 2.7E-06 30.2 2.0 19 142-160 2-20 (26)
79 smart00369 LRR_TYP Leucine-ric 92.1 0.12 2.7E-06 30.2 2.0 19 142-160 2-20 (26)
80 KOG3864 Uncharacterized conser 89.0 0.058 1.3E-06 49.4 -2.0 57 631-687 126-185 (221)
81 smart00370 LRR Leucine-rich re 88.2 0.35 7.5E-06 28.3 1.6 19 165-184 2-20 (26)
82 smart00369 LRR_TYP Leucine-ric 88.2 0.35 7.5E-06 28.3 1.6 19 165-184 2-20 (26)
83 smart00367 LRR_CC Leucine-rich 82.0 0.85 1.8E-05 26.7 1.3 14 748-761 3-16 (26)
84 smart00364 LRR_BAC Leucine-ric 74.7 1.9 4E-05 25.1 1.1 17 143-159 3-19 (26)
85 smart00365 LRR_SD22 Leucine-ri 74.5 2.3 5.1E-05 24.8 1.6 16 142-157 2-17 (26)
86 PF14162 YozD: YozD-like prote 64.9 6.5 0.00014 26.8 2.2 21 2-22 11-31 (57)
87 PF13516 LRR_6: Leucine Rich r 61.4 6.6 0.00014 22.2 1.6 10 166-175 3-12 (24)
88 smart00368 LRR_RI Leucine rich 54.4 9.3 0.0002 22.7 1.5 13 143-155 3-15 (28)
89 KOG3763 mRNA export factor TAP 42.8 12 0.00025 40.5 1.1 66 324-393 216-285 (585)
90 PF05725 FNIP: FNIP Repeat; I 33.5 56 0.0012 21.9 3.0 32 724-756 12-43 (44)
91 KOG4308 LRR-containing protein 27.4 6.7 0.00015 42.8 -3.6 15 114-128 168-182 (478)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=4.7e-39 Score=385.76 Aligned_cols=525 Identities=18% Similarity=0.197 Sum_probs=285.2
Q ss_pred CceeEEEeccCCccccchhhhhHHHHhCCCCCeeEEEccCCcCcc-cccccc-cCCCCCceeeccCCccc-ccchhhhcc
Q 003899 88 EHLRTFLPVNLSNYRINYLAWSVLQMLMNLPRLRVFSLHGYSNII-ELPNEI-ENLKHLRFLNLSRTSIQ-ILPESINSL 164 (788)
Q Consensus 88 ~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~l~-~lp~~~-~~l~~L~~L~L~~~~i~-~lp~~i~~L 164 (788)
.+++.|.+.++. +.+.++..|..+++|++|+|++| .+. .+|..+ ..+.+||+|+|++|++. .+|. +.+
T Consensus 69 ~~v~~L~L~~~~------i~~~~~~~~~~l~~L~~L~Ls~n-~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l 139 (968)
T PLN00113 69 SRVVSIDLSGKN------ISGKISSAIFRLPYIQTINLSNN-QLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSI 139 (968)
T ss_pred CcEEEEEecCCC------ccccCChHHhCCCCCCEEECCCC-ccCCcCChHHhccCCCCCEEECcCCccccccCc--ccc
Confidence 456666666542 33444556777888888888887 554 677554 47788888888888776 3453 457
Q ss_pred ccCcEEEccCccchhhchhhhhcccCCceEecCCCcCcccCCccCcCCCCcceeCceEeCCCCCCCcccccccccCCcee
Q 003899 165 YNLNTILLEDCYQLKKLCNDMGNLKKLRHLKSSNVDSLEEMPKGFGKLTCLLTLGTFVVGKDGGSGLRELKSLTHLQGTL 244 (788)
Q Consensus 165 ~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l 244 (788)
++|++|++++|.....+|..++.+++|++|++++|.....+|..++++++|++|++.++...+
T Consensus 140 ~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~----------------- 202 (968)
T PLN00113 140 PNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVG----------------- 202 (968)
T ss_pred CCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcC-----------------
Confidence 788888888874444677778888888888888877455677777777777777764432210
Q ss_pred EEeccCCCCCchhhhhcccCCCcCCceEEEEeecCcccCccchhhhhhhcccCccccccceEEEEeeCCC-CCCcccCCC
Q 003899 245 QISKLENVKDVGDACEAQLNSKENLQALLLKWSTRDVQNLDQCEFETHVLSVLKPHQDVQELTITGYGGT-KFPIWLGDS 323 (788)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~~p~~~~~~ 323 (788)
.....+.++++|+.|+++++.. ....+..+..+++|+.|++++|... .+|..+.
T Consensus 203 -------------~~p~~l~~l~~L~~L~L~~n~l----------~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~-- 257 (968)
T PLN00113 203 -------------QIPRELGQMKSLKWIYLGYNNL----------SGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLG-- 257 (968)
T ss_pred -------------cCChHHcCcCCccEEECcCCcc----------CCcCChhHhcCCCCCEEECcCceeccccChhHh--
Confidence 0001122333444444444332 1122233334445555555444332 2333332
Q ss_pred CCCCeeEEEECCCCC-CCCCC-CCCCCCccEEEecCCCCceEeCcccccCCCCCCCCCcceEecccccccccccccCCCC
Q 003899 324 SFSKLARLELCRCTS-TSLPS-VGQLPFLMELDISGMDGVKSVGSEFYRRSCSVPFPSLETLSFSDMREWEEWIPCGAGQ 401 (788)
Q Consensus 324 ~~~~L~~L~L~~~~~-~~l~~-l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~ 401 (788)
.+++|+.|++++|.+ ..+|. +..+++|++|++++|.....++.
T Consensus 258 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~----------------------------------- 302 (968)
T PLN00113 258 NLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPE----------------------------------- 302 (968)
T ss_pred CCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCCh-----------------------------------
Confidence 344444444444444 33332 44444444444444432211111
Q ss_pred cccccCCcccEEeeecCcccccCCCCCCCCccEEEEeccCCcccccCCCCCccEEEeccCCc--ceecCCcCCCCccEEe
Q 003899 402 EVDEVFPKLRKLSLFNCHKLQGKLPKRLLLLETLVIKSCQQLLVTIQCLPALSELQIDGCER--VVFSSPIDLSSLKSVH 479 (788)
Q Consensus 402 ~~~~~~~~L~~L~l~~c~~l~~~lp~~l~~L~~L~l~~c~~l~~~~~~~~~L~~L~l~~~~~--~~~~~~~~~~~L~~L~ 479 (788)
....+++|+.|++++| .+.+.+|. .+..+++|+.|++++|.. .....+..+++|+.|+
T Consensus 303 -~~~~l~~L~~L~l~~n-~~~~~~~~------------------~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~ 362 (968)
T PLN00113 303 -LVIQLQNLEILHLFSN-NFTGKIPV------------------ALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLD 362 (968)
T ss_pred -hHcCCCCCcEEECCCC-ccCCcCCh------------------hHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEE
Confidence 1122344444444444 22222221 122233333334333331 1112223344444444
Q ss_pred ccccccceeeccccccCCCCccEEEEecCcccchhhhcccccccCCCCCCeEEcccCCCccccccCccccccCCCCcccc
Q 003899 480 LAYVANEVVLAGLFEQGLPKLENLVIVEVREQAYLWQSETRLLQDIRSLNRLHISRCPRLLSLVTDEEHDQQQPESPYRL 559 (788)
Q Consensus 480 l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~l 559 (788)
+++|.....+|.. +..+++|+.|++++|.....+ +..+..+++|+.|++++|...
T Consensus 363 Ls~n~l~~~~p~~-~~~~~~L~~L~l~~n~l~~~~----p~~~~~~~~L~~L~L~~n~l~-------------------- 417 (968)
T PLN00113 363 LSTNNLTGEIPEG-LCSSGNLFKLILFSNSLEGEI----PKSLGACRSLRRVRLQDNSFS-------------------- 417 (968)
T ss_pred CCCCeeEeeCChh-HhCcCCCCEEECcCCEecccC----CHHHhCCCCCCEEECcCCEee--------------------
Confidence 4444333333332 233455555665555554444 455555555555555554321
Q ss_pred cceEEEEEecCccCcccccccccCCCCcceEEEecCCCCcccCCCCCCCCcccEEEeccccccccccccc--CccceEec
Q 003899 560 RFLELKIFIYDLENLQSLPAGLHNLRHLQKIWISKCPNLESFPEEGLPSAKLTELMIWRCENLKALPNSM--SSLLRLGI 637 (788)
Q Consensus 560 ~~L~L~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~--~~L~~L~l 637 (788)
..+|..+..+++|+.|++++|.....+|.....+++|+.|++++|.....+|..+ .+|+.|++
T Consensus 418 ---------------~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~~~L~~L~l 482 (968)
T PLN00113 418 ---------------GELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDL 482 (968)
T ss_pred ---------------eECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCcccccccceEEEC
Confidence 1223334445555566665544333444444445556666666655554444432 25666666
Q ss_pred cCCCCCCCCCCC-CCCCCccEEEEeccCCCCcccccccCCCCCccEEEEcCCCCCcccCCC---CCCCCCeEecCCCCCc
Q 003899 638 IGCPSLESFPED-GFPTNLQSLEVRDLKITKPLLEWGLNRFTSLRNLSIGGGYPDLLSSPP---FPASLTELWISDMPDL 713 (788)
Q Consensus 638 ~~c~~l~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~---~~~~L~~L~l~~~~~l 713 (788)
++|.-...+|.. .-.++|+.|++++|...+.++. .+.++++|++|++++ |.-...+|. .+++|+.|+|++|...
T Consensus 483 s~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~-~~~~l~~L~~L~Ls~-N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 560 (968)
T PLN00113 483 SRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPD-ELSSCKKLVSLDLSH-NQLSGQIPASFSEMPVLSQLDLSQNQLS 560 (968)
T ss_pred cCCccCCccChhhhhhhccCEEECcCCcceeeCCh-HHcCccCCCEEECCC-CcccccCChhHhCcccCCEEECCCCccc
Confidence 665433333322 1235777788877766554443 577788888888888 444445555 5678888888887666
Q ss_pred ccchhhcCCCCCCCceecccCCCCcccCCCCCcCCcceEeecCChhH
Q 003899 714 ECLSSISENLTSLEFLYLIDCPKLKYFPEQGLPKSLSRLSIHNCPLI 760 (788)
Q Consensus 714 ~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~i~~c~~l 760 (788)
..+|..+..+++|+.|++++|+....+|..+...++....+.++|.+
T Consensus 561 ~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~~~~~~~~~~~~~n~~l 607 (968)
T PLN00113 561 GEIPKNLGNVESLVQVNISHNHLHGSLPSTGAFLAINASAVAGNIDL 607 (968)
T ss_pred ccCChhHhcCcccCEEeccCCcceeeCCCcchhcccChhhhcCCccc
Confidence 67888888888899999999877777887666555555555665533
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=7.2e-38 Score=375.54 Aligned_cols=505 Identities=19% Similarity=0.174 Sum_probs=320.3
Q ss_pred CCceeEEEEEccCCccccccccccCCCceeEEEeccCCccccchhhhhHHH-HhCCCCCeeEEEccCCcCcc-ccccccc
Q 003899 62 CQSLRHFSYICGESDGEKRLQSVCDVEHLRTFLPVNLSNYRINYLAWSVLQ-MLMNLPRLRVFSLHGYSNII-ELPNEIE 139 (788)
Q Consensus 62 ~~~~r~lsl~~~~~~~~~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~-~~~~l~~Lr~L~L~~~~~l~-~lp~~~~ 139 (788)
..+++.+.+..+.+... ....+..+++|+.|.+.++. +.+.+|. .+..+++||+|+|++| .+. .+|. +
T Consensus 68 ~~~v~~L~L~~~~i~~~-~~~~~~~l~~L~~L~Ls~n~------~~~~ip~~~~~~l~~L~~L~Ls~n-~l~~~~p~--~ 137 (968)
T PLN00113 68 SSRVVSIDLSGKNISGK-ISSAIFRLPYIQTINLSNNQ------LSGPIPDDIFTTSSSLRYLNLSNN-NFTGSIPR--G 137 (968)
T ss_pred CCcEEEEEecCCCcccc-CChHHhCCCCCCEEECCCCc------cCCcCChHHhccCCCCCEEECcCC-ccccccCc--c
Confidence 45799999988754332 23567789999999998764 4457777 6779999999999999 554 4554 5
Q ss_pred CCCCCceeeccCCccc-ccchhhhccccCcEEEccCccchhhchhhhhcccCCceEecCCCcCcccCCccCcCCCCccee
Q 003899 140 NLKHLRFLNLSRTSIQ-ILPESINSLYNLNTILLEDCYQLKKLCNDMGNLKKLRHLKSSNVDSLEEMPKGFGKLTCLLTL 218 (788)
Q Consensus 140 ~l~~L~~L~L~~~~i~-~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~i~~l~~L~~L 218 (788)
.+++|++|+|++|.+. .+|..++.+++|++|++++|.....+|..++++++|++|++++|.....+|..++++++|++|
T Consensus 138 ~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L 217 (968)
T PLN00113 138 SIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWI 217 (968)
T ss_pred ccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEE
Confidence 6899999999999997 679999999999999999995567889999999999999999999667789999999999999
Q ss_pred CceEeCCCCCCCcccccccccCCceeEEeccCCCCCchhhhhcccCCCcCCceEEEEeecCcccCccchhhhhhhcccCc
Q 003899 219 GTFVVGKDGGSGLRELKSLTHLQGTLQISKLENVKDVGDACEAQLNSKENLQALLLKWSTRDVQNLDQCEFETHVLSVLK 298 (788)
Q Consensus 219 ~~~~~~~~~~~~~~~l~~L~~L~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~ 298 (788)
++..+...+ .....+.++++|+.|+++.+.. ....+..+.
T Consensus 218 ~L~~n~l~~------------------------------~~p~~l~~l~~L~~L~L~~n~l----------~~~~p~~l~ 257 (968)
T PLN00113 218 YLGYNNLSG------------------------------EIPYEIGGLTSLNHLDLVYNNL----------TGPIPSSLG 257 (968)
T ss_pred ECcCCccCC------------------------------cCChhHhcCCCCCEEECcCcee----------ccccChhHh
Confidence 986554321 0111244556777777766654 334555677
Q ss_pred cccccceEEEEeeCCC-CCCcccCCCCCCCeeEEEECCCCC-CCCCC-CCCCCCccEEEecCCCCceEeCcccccCCCCC
Q 003899 299 PHQDVQELTITGYGGT-KFPIWLGDSSFSKLARLELCRCTS-TSLPS-VGQLPFLMELDISGMDGVKSVGSEFYRRSCSV 375 (788)
Q Consensus 299 ~~~~L~~L~l~~~~~~-~~p~~~~~~~~~~L~~L~L~~~~~-~~l~~-l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 375 (788)
.+++|+.|+++++... .+|.++. .+++|+.|++++|.+ ..+|. +..+++|++|++++|.....++..+.
T Consensus 258 ~l~~L~~L~L~~n~l~~~~p~~l~--~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~------ 329 (968)
T PLN00113 258 NLKNLQYLFLYQNKLSGPIPPSIF--SLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALT------ 329 (968)
T ss_pred CCCCCCEEECcCCeeeccCchhHh--hccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHh------
Confidence 7788888888877654 4566665 678899999998888 56665 78888999999988865544443332
Q ss_pred CCCCcceEecccccccccccccCCCCcccccCCcccEEeeecCcccccCCCCCCCCccEEEEeccCCcccccCCCCCccE
Q 003899 376 PFPSLETLSFSDMREWEEWIPCGAGQEVDEVFPKLRKLSLFNCHKLQGKLPKRLLLLETLVIKSCQQLLVTIQCLPALSE 455 (788)
Q Consensus 376 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~lp~~l~~L~~L~l~~c~~l~~~~~~~~~L~~ 455 (788)
.+++|+.|+++++.-...++. ..+.+++|+.|++++| .+.+.+|. .+..+++|+.
T Consensus 330 ~l~~L~~L~L~~n~l~~~~p~------~l~~~~~L~~L~Ls~n-~l~~~~p~------------------~~~~~~~L~~ 384 (968)
T PLN00113 330 SLPRLQVLQLWSNKFSGEIPK------NLGKHNNLTVLDLSTN-NLTGEIPE------------------GLCSSGNLFK 384 (968)
T ss_pred cCCCCCEEECcCCCCcCcCCh------HHhCCCCCcEEECCCC-eeEeeCCh------------------hHhCcCCCCE
Confidence 267777777776543333332 3445677777777776 44445553 2222344444
Q ss_pred EEeccCCc--ceecCCcCCCCccEEeccccccceeeccccccCCCCccEEEEecCcccchhhhcccccccCCCCCCeEEc
Q 003899 456 LQIDGCER--VVFSSPIDLSSLKSVHLAYVANEVVLAGLFEQGLPKLENLVIVEVREQAYLWQSETRLLQDIRSLNRLHI 533 (788)
Q Consensus 456 L~l~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l 533 (788)
|++++|.. ..+..+..+++|+.|++.+|.....+|.. +..++.|+.|++++|...... +..+..+++|+.|++
T Consensus 385 L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~-~~~l~~L~~L~Ls~N~l~~~~----~~~~~~l~~L~~L~L 459 (968)
T PLN00113 385 LILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSE-FTKLPLVYFLDISNNNLQGRI----NSRKWDMPSLQMLSL 459 (968)
T ss_pred EECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChh-HhcCCCCCEEECcCCcccCcc----ChhhccCCCCcEEEC
Confidence 44444441 12223344555666666555444344433 355666666666666655544 455556666666666
Q ss_pred ccCCCccccccCccccccCCCCcccccceEE-EEEecCccCcccccccccCCCCcceEEEecCCCCcccCCCCCCCCccc
Q 003899 534 SRCPRLLSLVTDEEHDQQQPESPYRLRFLEL-KIFIYDLENLQSLPAGLHNLRHLQKIWISKCPNLESFPEEGLPSAKLT 612 (788)
Q Consensus 534 ~~c~~l~~~~~~~~~~~~~~~~~~~l~~L~L-~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~L~ 612 (788)
++|.....+|.. ...++ | .+++++|.....+|..+..+++|+.|++++|.....+|..+..+++|+
T Consensus 460 ~~n~~~~~~p~~----~~~~~---------L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~ 526 (968)
T PLN00113 460 ARNKFFGGLPDS----FGSKR---------LENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLV 526 (968)
T ss_pred cCceeeeecCcc----ccccc---------ceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCC
Confidence 666543333321 00112 4 555555544445555555566666666666544445555555555666
Q ss_pred EEEeccccccccccccc---CccceEeccCCCCCCCCCCC-CCCCCccEEEEeccCCCC
Q 003899 613 ELMIWRCENLKALPNSM---SSLLRLGIIGCPSLESFPED-GFPTNLQSLEVRDLKITK 667 (788)
Q Consensus 613 ~L~l~~c~~l~~l~~~~---~~L~~L~l~~c~~l~~~~~~-~~~~~L~~L~l~~~~~~~ 667 (788)
+|++++|.....+|..+ ++|+.|++++|.-...+|.. .-.++|+.|++++|+..+
T Consensus 527 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~ 585 (968)
T PLN00113 527 SLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHG 585 (968)
T ss_pred EEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCccee
Confidence 66666555444444322 24444555444333333321 112344444444444333
No 3
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.96 E-value=8.3e-29 Score=296.25 Aligned_cols=427 Identities=20% Similarity=0.226 Sum_probs=254.0
Q ss_pred HHHHHHHhCcCCcccCCCCCcEEEchhHHHHHHHHhcCce-------EEEecC-CcC-ccccccCCceeEEEEEccCCcc
Q 003899 7 EFVRELHSRSLFQQSSKDASRFVMHDLINDLAWWAAGEMC-------FRMDDT-LEG-ENRQKFCQSLRHFSYICGESDG 77 (788)
Q Consensus 7 ~~~~eL~~r~ll~~~~~~~~~~~mHdlv~d~a~~i~~~~~-------~~~~~~-~~~-~~~~~~~~~~r~lsl~~~~~~~ 77 (788)
.-+++|+++|||+... ..++|||++||||+++++++. +.+... ... ........+++++++.......
T Consensus 470 ~~l~~L~~ksLi~~~~---~~~~MHdLl~~~~r~i~~~~~~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~~ 546 (1153)
T PLN03210 470 IGLKNLVDKSLIHVRE---DIVEMHSLLQEMGKEIVRAQSNEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEIDE 546 (1153)
T ss_pred hChHHHHhcCCEEEcC---CeEEhhhHHHHHHHHHHHhhcCCCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCccce
Confidence 3488999999998864 579999999999999997653 222211 000 0011234678888877654432
Q ss_pred c-cccccccCCCceeEEEeccCCccccchhhhhHHHHhCCC-CCeeEEEccCCcCcccccccccCCCCCceeeccCCccc
Q 003899 78 E-KRLQSVCDVEHLRTFLPVNLSNYRINYLAWSVLQMLMNL-PRLRVFSLHGYSNIIELPNEIENLKHLRFLNLSRTSIQ 155 (788)
Q Consensus 78 ~-~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~l-~~Lr~L~L~~~~~l~~lp~~~~~l~~L~~L~L~~~~i~ 155 (788)
. ....+|.++++|+.|.+........+.....+|..|..+ ..||.|++.++ .+..+|..| ...+|++|+++++.+.
T Consensus 547 ~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~-~l~~lP~~f-~~~~L~~L~L~~s~l~ 624 (1153)
T PLN03210 547 LHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKY-PLRCMPSNF-RPENLVKLQMQGSKLE 624 (1153)
T ss_pred eeecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCC-CCCCCCCcC-CccCCcEEECcCcccc
Confidence 1 122457889999999886542100011223455545555 46999999999 999999887 5789999999999999
Q ss_pred ccchhhhccccCcEEEccCccchhhchhhhhcccCCceEecCCCcCcccCCccCcCCCCcceeCceEeCCCCCCCccccc
Q 003899 156 ILPESINSLYNLNTILLEDCYQLKKLCNDMGNLKKLRHLKSSNVDSLEEMPKGFGKLTCLLTLGTFVVGKDGGSGLRELK 235 (788)
Q Consensus 156 ~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~l~ 235 (788)
.+|.++..+++|++|+|++|..+..+|. ++.+++|++|++++|..+..+|..++.+++|+.|++.++..
T Consensus 625 ~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~---------- 693 (1153)
T PLN03210 625 KLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCEN---------- 693 (1153)
T ss_pred ccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCC----------
Confidence 9999999999999999999878888985 89999999999999988999999999999999998754321
Q ss_pred ccccCCceeEEeccCCCCCchhhhhcccCCCcCCceEEEEeecCcccCccchhhhhhhcccCccccccceEEEEeeCCCC
Q 003899 236 SLTHLQGTLQISKLENVKDVGDACEAQLNSKENLQALLLKWSTRDVQNLDQCEFETHVLSVLKPHQDVQELTITGYGGTK 315 (788)
Q Consensus 236 ~L~~L~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 315 (788)
+..+. . -.++++|+.|.++++.. ....+. ...+|+.|++.++....
T Consensus 694 -L~~Lp-------------------~-~i~l~sL~~L~Lsgc~~----------L~~~p~---~~~nL~~L~L~~n~i~~ 739 (1153)
T PLN03210 694 -LEILP-------------------T-GINLKSLYRLNLSGCSR----------LKSFPD---ISTNISWLDLDETAIEE 739 (1153)
T ss_pred -cCccC-------------------C-cCCCCCCCEEeCCCCCC----------cccccc---ccCCcCeeecCCCcccc
Confidence 11110 0 00234555555544332 000000 12345555555554444
Q ss_pred CCcccCCCCCCCeeEEEECCCCCCCCCCCCCCCCccEEEecCCCCceEeCcccccCCCCCCCCCcceEeccccccccccc
Q 003899 316 FPIWLGDSSFSKLARLELCRCTSTSLPSVGQLPFLMELDISGMDGVKSVGSEFYRRSCSVPFPSLETLSFSDMREWEEWI 395 (788)
Q Consensus 316 ~p~~~~~~~~~~L~~L~L~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~ 395 (788)
+|..+ .+++|+.|.+.++....+.. ....+..... ..+++|+.|++++++.+..++
T Consensus 740 lP~~~---~l~~L~~L~l~~~~~~~l~~----------------~~~~l~~~~~-----~~~~sL~~L~Ls~n~~l~~lP 795 (1153)
T PLN03210 740 FPSNL---RLENLDELILCEMKSEKLWE----------------RVQPLTPLMT-----MLSPSLTRLFLSDIPSLVELP 795 (1153)
T ss_pred ccccc---cccccccccccccchhhccc----------------cccccchhhh-----hccccchheeCCCCCCccccC
Confidence 44433 24444444444332210000 0000000000 114566666666666555555
Q ss_pred ccCCCCcccccCCcccEEeeecCcccccCCCC--CCCCccEEEEeccCCcccccCCCCCccEEEeccCCcceecCCcCCC
Q 003899 396 PCGAGQEVDEVFPKLRKLSLFNCHKLQGKLPK--RLLLLETLVIKSCQQLLVTIQCLPALSELQIDGCERVVFSSPIDLS 473 (788)
Q Consensus 396 ~~~~~~~~~~~~~~L~~L~l~~c~~l~~~lp~--~l~~L~~L~l~~c~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 473 (788)
. ..+.+++|+.|++++|..+. .+|. .+++|+.|++++|..+........+|++|++++|.
T Consensus 796 ~------si~~L~~L~~L~Ls~C~~L~-~LP~~~~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n~----------- 857 (1153)
T PLN03210 796 S------SIQNLHKLEHLEIENCINLE-TLPTGINLESLESLDLSGCSRLRTFPDISTNISDLNLSRTG----------- 857 (1153)
T ss_pred h------hhhCCCCCCEEECCCCCCcC-eeCCCCCccccCEEECCCCCccccccccccccCEeECCCCC-----------
Confidence 4 44556777777777776665 5653 24555666665555442211122344444444443
Q ss_pred CccEEeccccccceeeccccccCCCCccEEEEecCcccchhhhcccccccCCCCCCeEEcccCCCcccc
Q 003899 474 SLKSVHLAYVANEVVLAGLFEQGLPKLENLVIVEVREQAYLWQSETRLLQDIRSLNRLHISRCPRLLSL 542 (788)
Q Consensus 474 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~ 542 (788)
++.+|.. +..+++|+.|++++|..+..+ +.....+++|+.+++++|..+..+
T Consensus 858 ------------i~~iP~s-i~~l~~L~~L~L~~C~~L~~l----~~~~~~L~~L~~L~l~~C~~L~~~ 909 (1153)
T PLN03210 858 ------------IEEVPWW-IEKFSNLSFLDMNGCNNLQRV----SLNISKLKHLETVDFSDCGALTEA 909 (1153)
T ss_pred ------------CccChHH-HhcCCCCCEEECCCCCCcCcc----CcccccccCCCeeecCCCcccccc
Confidence 2333332 244555555555555555544 444555566666666666555443
No 4
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.96 E-value=5.8e-29 Score=280.95 Aligned_cols=216 Identities=27% Similarity=0.371 Sum_probs=169.4
Q ss_pred ChhHHHHHHHHHHhCcCCcccCC--CCCcEEEchhHHHHHHHHhc-----CceEEEecC--CcCccccccCCceeEEEEE
Q 003899 1 MEGLGREFVRELHSRSLFQQSSK--DASRFVMHDLINDLAWWAAG-----EMCFRMDDT--LEGENRQKFCQSLRHFSYI 71 (788)
Q Consensus 1 ~ed~g~~~~~eL~~r~ll~~~~~--~~~~~~mHdlv~d~a~~i~~-----~~~~~~~~~--~~~~~~~~~~~~~r~lsl~ 71 (788)
+||+|++|+.+|++|+|++..+. ...+|+|||+|||||.|+|+ ++.+++.+. ..+.+....+..+|+++++
T Consensus 452 ~~d~G~~~i~~LV~~~Ll~~~~~~~~~~~~kmHDvvRe~al~ias~~~~~~e~~iv~~~~~~~~~~~~~~~~~~rr~s~~ 531 (889)
T KOG4658|consen 452 AEDVGYDYIEELVRASLLIEERDEGRKETVKMHDVVREMALWIASDFGKQEENQIVSDGVGLSEIPQVKSWNSVRRMSLM 531 (889)
T ss_pred hhcchHHHHHHHHHHHHHhhcccccceeEEEeeHHHHHHHHHHhccccccccceEEECCcCccccccccchhheeEEEEe
Confidence 47999999999999999999762 56899999999999999999 565555542 1122334456789999999
Q ss_pred ccCCccccccccccCCCceeEEEeccCCccccchhhhhHHH-HhCCCCCeeEEEccCCcCcccccccccCCCCCceeecc
Q 003899 72 CGESDGEKRLQSVCDVEHLRTFLPVNLSNYRINYLAWSVLQ-MLMNLPRLRVFSLHGYSNIIELPNEIENLKHLRFLNLS 150 (788)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~-~~~~l~~Lr~L~L~~~~~l~~lp~~~~~l~~L~~L~L~ 150 (788)
++.+... ..-..+++|++|.+.++.. ....++. +|..++.||||||++|..+.++|.+|++|.+||||+|+
T Consensus 532 ~~~~~~~---~~~~~~~~L~tLll~~n~~-----~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~ 603 (889)
T KOG4658|consen 532 NNKIEHI---AGSSENPKLRTLLLQRNSD-----WLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLS 603 (889)
T ss_pred ccchhhc---cCCCCCCccceEEEeecch-----hhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhccccc
Confidence 9876443 3345677899999998742 1244444 79999999999999998999999999999999999999
Q ss_pred CCcccccchhhhccccCcEEEccCccchhhchhhhhcccCCceEecCCCcCcccCCccCcCCCCcceeCceEeCC
Q 003899 151 RTSIQILPESINSLYNLNTILLEDCYQLKKLCNDMGNLKKLRHLKSSNVDSLEEMPKGFGKLTCLLTLGTFVVGK 225 (788)
Q Consensus 151 ~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~i~~l~~L~~L~~~~~~~ 225 (788)
++.|.++|.++++|+.|.+||+..+..+..+|..+..|.+||+|.+.... ...-...++.+.+|++|....+..
T Consensus 604 ~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~-~~~~~~~l~el~~Le~L~~ls~~~ 677 (889)
T KOG4658|consen 604 DTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSA-LSNDKLLLKELENLEHLENLSITI 677 (889)
T ss_pred CCCccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccc-cccchhhHHhhhcccchhhheeec
Confidence 99999999999999999999999997777777767779999999998765 222122245555556555544433
No 5
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.95 E-value=1.4e-31 Score=257.96 Aligned_cols=119 Identities=24% Similarity=0.286 Sum_probs=83.5
Q ss_pred ccCcccccccccCCCCcceEEEecCCCCcccCCCCCCCCcccEEEecccccccccccccCccceEeccCCCCCCCCCCCC
Q 003899 571 LENLQSLPAGLHNLRHLQKIWISKCPNLESFPEEGLPSAKLTELMIWRCENLKALPNSMSSLLRLGIIGCPSLESFPEDG 650 (788)
Q Consensus 571 ~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~L~~L~l~~c~~l~~~~~~~ 650 (788)
.+.+..+|..++.+++|..|++++ +.+..+|.+++.+..|+.|+++.| ..+.+|..+..++.+.+
T Consensus 421 nn~isfv~~~l~~l~kLt~L~L~N-N~Ln~LP~e~~~lv~Lq~LnlS~N-rFr~lP~~~y~lq~lEt------------- 485 (565)
T KOG0472|consen 421 NNKISFVPLELSQLQKLTFLDLSN-NLLNDLPEEMGSLVRLQTLNLSFN-RFRMLPECLYELQTLET------------- 485 (565)
T ss_pred cCccccchHHHHhhhcceeeeccc-chhhhcchhhhhhhhhheeccccc-ccccchHHHhhHHHHHH-------------
Confidence 345556677788899999999998 578899999888888999988886 55666654442222221
Q ss_pred CCCCccEEEEeccCCCCcccccccCCCCCccEEEEcCCCCCcccCCCCCCCCCeEecCCCCCcccchhhcCCCCCCCcee
Q 003899 651 FPTNLQSLEVRDLKITKPLLEWGLNRFTSLRNLSIGGGYPDLLSSPPFPASLTELWISDMPDLECLSSISENLTSLEFLY 730 (788)
Q Consensus 651 ~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~ 730 (788)
.+..++.++.+++..++++.+|.+|++.. +.++.+|..++++++|++|+
T Consensus 486 --------llas~nqi~~vd~~~l~nm~nL~tLDL~n-----------------------Ndlq~IPp~LgnmtnL~hLe 534 (565)
T KOG0472|consen 486 --------LLASNNQIGSVDPSGLKNMRNLTTLDLQN-----------------------NDLQQIPPILGNMTNLRHLE 534 (565)
T ss_pred --------HHhccccccccChHHhhhhhhcceeccCC-----------------------CchhhCChhhccccceeEEE
Confidence 11122333344444566666666666666 78889998899999999999
Q ss_pred cccCC
Q 003899 731 LIDCP 735 (788)
Q Consensus 731 l~~c~ 735 (788)
++++|
T Consensus 535 L~gNp 539 (565)
T KOG0472|consen 535 LDGNP 539 (565)
T ss_pred ecCCc
Confidence 99996
No 6
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.93 E-value=9.9e-30 Score=245.33 Aligned_cols=459 Identities=19% Similarity=0.180 Sum_probs=282.9
Q ss_pred cCCCceeEEEeccCCccccchhhhhHHHHhCCCCCeeEEEccCCcCcccccccccCCCCCceeeccCCcccccchhhhcc
Q 003899 85 CDVEHLRTFLPVNLSNYRINYLAWSVLQMLMNLPRLRVFSLHGYSNIIELPNEIENLKHLRFLNLSRTSIQILPESINSL 164 (788)
Q Consensus 85 ~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~L 164 (788)
.++..+.+|.++++. ....|.++..+..++.|+.+.| .+..+|+.++.+..|+.|+.++|.+.++|++|+.+
T Consensus 65 ~nL~~l~vl~~~~n~-------l~~lp~aig~l~~l~~l~vs~n-~ls~lp~~i~s~~~l~~l~~s~n~~~el~~~i~~~ 136 (565)
T KOG0472|consen 65 KNLACLTVLNVHDNK-------LSQLPAAIGELEALKSLNVSHN-KLSELPEQIGSLISLVKLDCSSNELKELPDSIGRL 136 (565)
T ss_pred hcccceeEEEeccch-------hhhCCHHHHHHHHHHHhhcccc-hHhhccHHHhhhhhhhhhhccccceeecCchHHHH
Confidence 344445555555542 2556667777777777777777 77777777777777888888877777777778777
Q ss_pred ccCcEEEccCccchhhchhhhhcccCCceEecCCCcCcccCCccCcCCCCcceeCceEeCCCC-CCCcccccccccCCce
Q 003899 165 YNLNTILLEDCYQLKKLCNDMGNLKKLRHLKSSNVDSLEEMPKGFGKLTCLLTLGTFVVGKDG-GSGLRELKSLTHLQGT 243 (788)
Q Consensus 165 ~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~i~~l~~L~~L~~~~~~~~~-~~~~~~l~~L~~L~~~ 243 (788)
..|+.|+..+| .+..+|.+++.+.+|..|++.+|. ++.+|+..-.|+.|++|+...+.... +..++.+.++..| .
T Consensus 137 ~~l~dl~~~~N-~i~slp~~~~~~~~l~~l~~~~n~-l~~l~~~~i~m~~L~~ld~~~N~L~tlP~~lg~l~~L~~L--y 212 (565)
T KOG0472|consen 137 LDLEDLDATNN-QISSLPEDMVNLSKLSKLDLEGNK-LKALPENHIAMKRLKHLDCNSNLLETLPPELGGLESLELL--Y 212 (565)
T ss_pred hhhhhhhcccc-ccccCchHHHHHHHHHHhhccccc-hhhCCHHHHHHHHHHhcccchhhhhcCChhhcchhhhHHH--H
Confidence 77777777777 777777777777777777777777 77777665457777777765443322 3333333333322 2
Q ss_pred eEEeccCCCCCchhhhhcccCCCcCCceEEEEeecCcccCccchhhhhhhcccCccccccceEEEEeeCCCCCCcccCCC
Q 003899 244 LQISKLENVKDVGDACEAQLNSKENLQALLLKWSTRDVQNLDQCEFETHVLSVLKPHQDVQELTITGYGGTKFPIWLGDS 323 (788)
Q Consensus 244 l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~ 323 (788)
++-+.+.... .+.++..|+++.+..+.+ +....+....++++..|++..|....+|+.+.
T Consensus 213 L~~Nki~~lP--------ef~gcs~L~Elh~g~N~i----------~~lpae~~~~L~~l~vLDLRdNklke~Pde~c-- 272 (565)
T KOG0472|consen 213 LRRNKIRFLP--------EFPGCSLLKELHVGENQI----------EMLPAEHLKHLNSLLVLDLRDNKLKEVPDEIC-- 272 (565)
T ss_pred hhhcccccCC--------CCCccHHHHHHHhcccHH----------HhhHHHHhcccccceeeeccccccccCchHHH--
Confidence 2222222221 255556677777665554 44445566788999999999999999998886
Q ss_pred CCCCeeEEEECCCCCCCCCC-CCCCCCccEEEecCCCCceEeCcccccCCCCCCCCCcceEecc----cccccccccccC
Q 003899 324 SFSKLARLELCRCTSTSLPS-VGQLPFLMELDISGMDGVKSVGSEFYRRSCSVPFPSLETLSFS----DMREWEEWIPCG 398 (788)
Q Consensus 324 ~~~~L~~L~L~~~~~~~l~~-l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~----~~~~l~~~~~~~ 398 (788)
.+.+|..|++++|.+..+|. ++++ +|++|.+.||+ ++.+..++...++ -.-|++|.=. +.+.-+.-.. .
T Consensus 273 lLrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNP-lrTiRr~ii~~gT---~~vLKyLrs~~~~dglS~se~~~e-~ 346 (565)
T KOG0472|consen 273 LLRSLERLDLSNNDISSLPYSLGNL-HLKFLALEGNP-LRTIRREIISKGT---QEVLKYLRSKIKDDGLSQSEGGTE-T 346 (565)
T ss_pred HhhhhhhhcccCCccccCCcccccc-eeeehhhcCCc-hHHHHHHHHcccH---HHHHHHHHHhhccCCCCCCccccc-c
Confidence 78899999999999988886 9999 99999999996 4444443332211 1112222110 1000000000 0
Q ss_pred CCC------cccccCCcccEEeeecCcccccCCCCCCCCccEEEEeccCCcccccCC--CCCccEEEeccCCcc-eecCC
Q 003899 399 AGQ------EVDEVFPKLRKLSLFNCHKLQGKLPKRLLLLETLVIKSCQQLLVTIQC--LPALSELQIDGCERV-VFSSP 469 (788)
Q Consensus 399 ~~~------~~~~~~~~L~~L~l~~c~~l~~~lp~~l~~L~~L~l~~c~~l~~~~~~--~~~L~~L~l~~~~~~-~~~~~ 469 (788)
++. ....++-..+.|++++- +++ .+|. +.|.. -.-....+++.|... .+..+
T Consensus 347 ~~t~~~~~~~~~~~~i~tkiL~~s~~-qlt-~VPd-----------------EVfea~~~~~Vt~VnfskNqL~elPk~L 407 (565)
T KOG0472|consen 347 AMTLPSESFPDIYAIITTKILDVSDK-QLT-LVPD-----------------EVFEAAKSEIVTSVNFSKNQLCELPKRL 407 (565)
T ss_pred cCCCCCCcccchhhhhhhhhhccccc-ccc-cCCH-----------------HHHHHhhhcceEEEecccchHhhhhhhh
Confidence 000 01112234455555542 343 4442 11111 111344556666522 22333
Q ss_pred cCCCCccEEeccccccceeeccccccCCCCccEEEEecCcccchhhhcccccccCCCCCCeEEcccCCCccccccCcccc
Q 003899 470 IDLSSLKSVHLAYVANEVVLAGLFEQGLPKLENLVIVEVREQAYLWQSETRLLQDIRSLNRLHISRCPRLLSLVTDEEHD 549 (788)
Q Consensus 470 ~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~ 549 (788)
..+..+.+.-+..++.+..+| .....+++|..|++++|..-.. |..++.+..|+.|+++.+ ++..+|
T Consensus 408 ~~lkelvT~l~lsnn~isfv~-~~l~~l~kLt~L~L~NN~Ln~L-----P~e~~~lv~Lq~LnlS~N-rFr~lP------ 474 (565)
T KOG0472|consen 408 VELKELVTDLVLSNNKISFVP-LELSQLQKLTFLDLSNNLLNDL-----PEEMGSLVRLQTLNLSFN-RFRMLP------ 474 (565)
T ss_pred HHHHHHHHHHHhhcCccccch-HHHHhhhcceeeecccchhhhc-----chhhhhhhhhheeccccc-ccccch------
Confidence 334444444444444444333 3457788999999998865443 777888888999999986 333333
Q ss_pred ccCCCCcccccceEE-EEEecCccCcccccc-cccCCCCcceEEEecCCCCcccCCCCCCCCcccEEEeccccc
Q 003899 550 QQQPESPYRLRFLEL-KIFIYDLENLQSLPA-GLHNLRHLQKIWISKCPNLESFPEEGLPSAKLTELMIWRCEN 621 (788)
Q Consensus 550 ~~~~~~~~~l~~L~L-~L~l~~~~~l~~l~~-~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~c~~ 621 (788)
..+-.+.. +..+....++..++. ++.++.+|..||+.+ +.+..+|...+.+.+|++|++++|+.
T Consensus 475 -------~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~n-Ndlq~IPp~LgnmtnL~hLeL~gNpf 540 (565)
T KOG0472|consen 475 -------ECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQN-NDLQQIPPILGNMTNLRHLELDGNPF 540 (565)
T ss_pred -------HHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCC-CchhhCChhhccccceeEEEecCCcc
Confidence 22111112 333444566667754 488999999999998 68889999999999999999999874
No 7
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.91 E-value=2.8e-25 Score=224.44 Aligned_cols=263 Identities=21% Similarity=0.232 Sum_probs=124.5
Q ss_pred ccceEEEEeeCCCCCCcccCCCCCCCeeEEEECCCCCCCCCC--CCCCCCccEEEecCCCCceEeCcccccCCCCCCCCC
Q 003899 302 DVQELTITGYGGTKFPIWLGDSSFSKLARLELCRCTSTSLPS--VGQLPFLMELDISGMDGVKSVGSEFYRRSCSVPFPS 379 (788)
Q Consensus 302 ~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~L~~~~~~~l~~--l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~ 379 (788)
++++|++++|.++.+..... ..+.+|..|.|++|.+..+|. +..+|+|+.|+|..| .++.+....+.+ +++
T Consensus 174 ni~~L~La~N~It~l~~~~F-~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN-~irive~ltFqg-----L~S 246 (873)
T KOG4194|consen 174 NIKKLNLASNRITTLETGHF-DSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRN-RIRIVEGLTFQG-----LPS 246 (873)
T ss_pred CceEEeeccccccccccccc-cccchheeeecccCcccccCHHHhhhcchhhhhhcccc-ceeeehhhhhcC-----chh
Confidence 44444444444443321111 145566666666666655554 555666666666665 244442222221 666
Q ss_pred cceEecccccccccccccCCCCcccccCCcccEEeeecCcccccCCCC----CCCCccEEEEeccCCc---ccccCCCCC
Q 003899 380 LETLSFSDMREWEEWIPCGAGQEVDEVFPKLRKLSLFNCHKLQGKLPK----RLLLLETLVIKSCQQL---LVTIQCLPA 452 (788)
Q Consensus 380 L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~lp~----~l~~L~~L~l~~c~~l---~~~~~~~~~ 452 (788)
|+.|.+.. +++..... | .+..+.++++|++..| ++. .+.+ ++.+|+.|+++.+..- ...+..+++
T Consensus 247 l~nlklqr-N~I~kL~D---G--~Fy~l~kme~l~L~~N-~l~-~vn~g~lfgLt~L~~L~lS~NaI~rih~d~Wsftqk 318 (873)
T KOG4194|consen 247 LQNLKLQR-NDISKLDD---G--AFYGLEKMEHLNLETN-RLQ-AVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQK 318 (873)
T ss_pred hhhhhhhh-cCcccccC---c--ceeeecccceeecccc-hhh-hhhcccccccchhhhhccchhhhheeecchhhhccc
Confidence 66666654 22222221 1 3344666777777665 343 2221 2233333333332211 123344555
Q ss_pred ccEEEeccCCcce--ecCCcCCCCccEEeccccccceeeccccccCCCCccEEEEecCcccchhhhcccccccCCCCCCe
Q 003899 453 LSELQIDGCERVV--FSSPIDLSSLKSVHLAYVANEVVLAGLFEQGLPKLENLVIVEVREQAYLWQSETRLLQDIRSLNR 530 (788)
Q Consensus 453 L~~L~l~~~~~~~--~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~ 530 (788)
|++|+++.|.... ...+..+..|++|.+++ +.+.++....|.++++|++|++++|.....+ ++....+.++++|+.
T Consensus 319 L~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~-Nsi~~l~e~af~~lssL~~LdLr~N~ls~~I-EDaa~~f~gl~~Lrk 396 (873)
T KOG4194|consen 319 LKELDLSSNRITRLDEGSFRVLSQLEELNLSH-NSIDHLAEGAFVGLSSLHKLDLRSNELSWCI-EDAAVAFNGLPSLRK 396 (873)
T ss_pred ceeEeccccccccCChhHHHHHHHhhhhcccc-cchHHHHhhHHHHhhhhhhhcCcCCeEEEEE-ecchhhhccchhhhh
Confidence 5555555555222 22333455555555555 2344444444455555555555555443332 112333444555555
Q ss_pred EEcccCCCccccccCccccccCCCCcccccceEEEEEecCccCcccccccccCCCCcceEEEecCCCCcccCCCCCCCCc
Q 003899 531 LHISRCPRLLSLVTDEEHDQQQPESPYRLRFLELKIFIYDLENLQSLPAGLHNLRHLQKIWISKCPNLESFPEEGLPSAK 610 (788)
Q Consensus 531 L~l~~c~~l~~~~~~~~~~~~~~~~~~~l~~L~L~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~ 610 (788)
|.+.+ +++++++.. .|.++++|++|+|.+| -+.++....+.--.
T Consensus 397 L~l~g-Nqlk~I~kr----------------------------------Afsgl~~LE~LdL~~N-aiaSIq~nAFe~m~ 440 (873)
T KOG4194|consen 397 LRLTG-NQLKSIPKR----------------------------------AFSGLEALEHLDLGDN-AIASIQPNAFEPME 440 (873)
T ss_pred eeecC-ceeeecchh----------------------------------hhccCcccceecCCCC-cceeecccccccch
Confidence 55554 234443332 4555777777777774 34444443433236
Q ss_pred ccEEEec
Q 003899 611 LTELMIW 617 (788)
Q Consensus 611 L~~L~l~ 617 (788)
|++|.+.
T Consensus 441 Lk~Lv~n 447 (873)
T KOG4194|consen 441 LKELVMN 447 (873)
T ss_pred hhhhhhc
Confidence 6666554
No 8
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.91 E-value=1.5e-25 Score=226.36 Aligned_cols=359 Identities=18% Similarity=0.169 Sum_probs=223.9
Q ss_pred CCceeEEEeccCCccccchhhhhHHHHhCCCCCeeEEEccCCcCcccccccccCCCCCceeeccCCccccc-chhhhccc
Q 003899 87 VEHLRTFLPVNLSNYRINYLAWSVLQMLMNLPRLRVFSLHGYSNIIELPNEIENLKHLRFLNLSRTSIQIL-PESINSLY 165 (788)
Q Consensus 87 ~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~l-p~~i~~L~ 165 (788)
.+..++|.+.++. +...-+..|.++++|+.+++..| .++.+|...+...+|+.|+|.+|.|.++ .+++..++
T Consensus 77 p~~t~~LdlsnNk------l~~id~~~f~nl~nLq~v~l~~N-~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~ 149 (873)
T KOG4194|consen 77 PSQTQTLDLSNNK------LSHIDFEFFYNLPNLQEVNLNKN-ELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALP 149 (873)
T ss_pred ccceeeeeccccc------cccCcHHHHhcCCcceeeeeccc-hhhhcccccccccceeEEeeeccccccccHHHHHhHh
Confidence 3456778887764 33444557999999999999999 9999998778888899999999999988 57789999
Q ss_pred cCcEEEccCccchhhchhh-hhcccCCceEecCCCcCcccCCcc-CcCCCCcceeCceEeCCCC--CCCcccccccccCC
Q 003899 166 NLNTILLEDCYQLKKLCND-MGNLKKLRHLKSSNVDSLEEMPKG-FGKLTCLLTLGTFVVGKDG--GSGLRELKSLTHLQ 241 (788)
Q Consensus 166 ~L~~L~L~~~~~l~~lp~~-i~~L~~L~~L~l~~~~~l~~~p~~-i~~l~~L~~L~~~~~~~~~--~~~~~~l~~L~~L~ 241 (788)
.||.|||+.| .+.++|.. +..-.++++|++++|. +..+-.+ |..+.+|-+|.+..++... ...
T Consensus 150 alrslDLSrN-~is~i~~~sfp~~~ni~~L~La~N~-It~l~~~~F~~lnsL~tlkLsrNrittLp~r~----------- 216 (873)
T KOG4194|consen 150 ALRSLDLSRN-LISEIPKPSFPAKVNIKKLNLASNR-ITTLETGHFDSLNSLLTLKLSRNRITTLPQRS----------- 216 (873)
T ss_pred hhhhhhhhhc-hhhcccCCCCCCCCCceEEeecccc-ccccccccccccchheeeecccCcccccCHHH-----------
Confidence 9999999999 88888875 6677889999999998 7777765 8888899998887765543 122
Q ss_pred ceeEEeccCCCCCchhhhhcccCCCcCCceEEEEeecCcccCccchhhhhhhcccCccccccceEEEEeeCCCCCCcccC
Q 003899 242 GTLQISKLENVKDVGDACEAQLNSKENLQALLLKWSTRDVQNLDQCEFETHVLSVLKPHQDVQELTITGYGGTKFPIWLG 321 (788)
Q Consensus 242 ~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~ 321 (788)
++++++|+.|++..+.+ .......+++++.|+.|.+..|....+.+.+.
T Consensus 217 ---------------------Fk~L~~L~~LdLnrN~i----------rive~ltFqgL~Sl~nlklqrN~I~kL~DG~F 265 (873)
T KOG4194|consen 217 ---------------------FKRLPKLESLDLNRNRI----------RIVEGLTFQGLPSLQNLKLQRNDISKLDDGAF 265 (873)
T ss_pred ---------------------hhhcchhhhhhccccce----------eeehhhhhcCchhhhhhhhhhcCcccccCcce
Confidence 33344555555544443 11222344555666666666655554433221
Q ss_pred CCCCCCeeEEEECCCCCCCCC--CCCCCCCccEEEecCCCCceEeCcccccCCCCCCCCCcceEecccccccccccccCC
Q 003899 322 DSSFSKLARLELCRCTSTSLP--SVGQLPFLMELDISGMDGVKSVGSEFYRRSCSVPFPSLETLSFSDMREWEEWIPCGA 399 (788)
Q Consensus 322 ~~~~~~L~~L~L~~~~~~~l~--~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~ 399 (788)
-.+.++++|+|..|++..+. ++-++..|+.|+++.|. +..+..+-+ ...++|+.|++++ +.+.++..
T Consensus 266 -y~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~Na-I~rih~d~W-----sftqkL~~LdLs~-N~i~~l~~--- 334 (873)
T KOG4194|consen 266 -YGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNA-IQRIHIDSW-----SFTQKLKELDLSS-NRITRLDE--- 334 (873)
T ss_pred -eeecccceeecccchhhhhhcccccccchhhhhccchhh-hheeecchh-----hhcccceeEeccc-cccccCCh---
Confidence 13566666666666663332 35566666666666663 333322211 1156666666665 34444332
Q ss_pred CCcccccCCcccEEeeecCcccccCCCCCCCCccEEEEeccCCcccccCCCCCccEEEeccCCc-c----eecCCcCCCC
Q 003899 400 GQEVDEVFPKLRKLSLFNCHKLQGKLPKRLLLLETLVIKSCQQLLVTIQCLPALSELQIDGCER-V----VFSSPIDLSS 474 (788)
Q Consensus 400 ~~~~~~~~~~L~~L~l~~c~~l~~~lp~~l~~L~~L~l~~c~~l~~~~~~~~~L~~L~l~~~~~-~----~~~~~~~~~~ 474 (788)
.....+..|++|.+++| .+. .+.+ ..|..+.+|++|+++.|.. . ....+.++++
T Consensus 335 --~sf~~L~~Le~LnLs~N-si~-~l~e-----------------~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~ 393 (873)
T KOG4194|consen 335 --GSFRVLSQLEELNLSHN-SID-HLAE-----------------GAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPS 393 (873)
T ss_pred --hHHHHHHHhhhhccccc-chH-HHHh-----------------hHHHHhhhhhhhcCcCCeEEEEEecchhhhccchh
Confidence 13344566777777765 333 2221 2333344444555444441 1 1122334666
Q ss_pred ccEEeccccccceeeccccccCCCCccEEEEecCcccchhhhcccccccCCCCCCeEEcc
Q 003899 475 LKSVHLAYVANEVVLAGLFEQGLPKLENLVIVEVREQAYLWQSETRLLQDIRSLNRLHIS 534 (788)
Q Consensus 475 L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~ 534 (788)
|++|.+.+ +.++.++...|.++.+|++|++.+|.+..+- +.+|..+ .|++|.+.
T Consensus 394 LrkL~l~g-Nqlk~I~krAfsgl~~LE~LdL~~NaiaSIq----~nAFe~m-~Lk~Lv~n 447 (873)
T KOG4194|consen 394 LRKLRLTG-NQLKSIPKRAFSGLEALEHLDLGDNAIASIQ----PNAFEPM-ELKELVMN 447 (873)
T ss_pred hhheeecC-ceeeecchhhhccCcccceecCCCCcceeec----ccccccc-hhhhhhhc
Confidence 66666666 3456666666666667777777666666554 5566655 66666655
No 9
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.89 E-value=6.2e-22 Score=237.39 Aligned_cols=345 Identities=21% Similarity=0.256 Sum_probs=265.9
Q ss_pred ccCCCcCCceEEEEeecCcccCccchhhhhhhcccCcc-ccccceEEEEeeCCCCCCcccCCCCCCCeeEEEECCCCCCC
Q 003899 262 QLNSKENLQALLLKWSTRDVQNLDQCEFETHVLSVLKP-HQDVQELTITGYGGTKFPIWLGDSSFSKLARLELCRCTSTS 340 (788)
Q Consensus 262 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~-~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~L~~~~~~~ 340 (788)
.+.++.+|+.|.+..+..+ .........++.+.. +.+|+.|.+.++....+|.++ .+.+|+.|++.++.+..
T Consensus 553 aF~~m~~L~~L~~~~~~~~----~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f---~~~~L~~L~L~~s~l~~ 625 (1153)
T PLN03210 553 AFKGMRNLLFLKFYTKKWD----QKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNF---RPENLVKLQMQGSKLEK 625 (1153)
T ss_pred HHhcCccccEEEEeccccc----ccccceeecCcchhhcCcccEEEEecCCCCCCCCCcC---CccCCcEEECcCccccc
Confidence 4667888888888654320 000011122333433 357999999999999999888 47899999999999866
Q ss_pred CCC-CCCCCCccEEEecCCCCceEeCcccccCCCCCCCCCcceEecccccccccccccCCCCcccccCCcccEEeeecCc
Q 003899 341 LPS-VGQLPFLMELDISGMDGVKSVGSEFYRRSCSVPFPSLETLSFSDMREWEEWIPCGAGQEVDEVFPKLRKLSLFNCH 419 (788)
Q Consensus 341 l~~-l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~ 419 (788)
++. +..+++|+.|+++++..++.++. + ..+++|+.|++.+|..+..++. ....+++|+.|++++|.
T Consensus 626 L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-l------s~l~~Le~L~L~~c~~L~~lp~------si~~L~~L~~L~L~~c~ 692 (1153)
T PLN03210 626 LWDGVHSLTGLRNIDLRGSKNLKEIPD-L------SMATNLETLKLSDCSSLVELPS------SIQYLNKLEDLDMSRCE 692 (1153)
T ss_pred cccccccCCCCCEEECCCCCCcCcCCc-c------ccCCcccEEEecCCCCccccch------hhhccCCCCEEeCCCCC
Confidence 654 78899999999999887777764 1 2289999999999988888776 66779999999999998
Q ss_pred ccccCCCC--CCCCccEEEEeccCCcccccCCCCCccEEEeccCCcceecCCcCCCCccEEeccccccce------eecc
Q 003899 420 KLQGKLPK--RLLLLETLVIKSCQQLLVTIQCLPALSELQIDGCERVVFSSPIDLSSLKSVHLAYVANEV------VLAG 491 (788)
Q Consensus 420 ~l~~~lp~--~l~~L~~L~l~~c~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~------~~~~ 491 (788)
.+. .+|. .+++|+.|++++|..+...-....+|++|+++++.....+....+++|+.|.+.++.... .++.
T Consensus 693 ~L~-~Lp~~i~l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~ 771 (1153)
T PLN03210 693 NLE-ILPTGINLKSLYRLNLSGCSRLKSFPDISTNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTP 771 (1153)
T ss_pred CcC-ccCCcCCCCCCCEEeCCCCCCccccccccCCcCeeecCCCccccccccccccccccccccccchhhccccccccch
Confidence 888 7885 578999999999987643333457899999999986555555567889988887754221 1112
Q ss_pred ccccCCCCccEEEEecCcccchhhhcccccccCCCCCCeEEcccCCCccccccCccccccCCCCcccccceEE-EEEecC
Q 003899 492 LFEQGLPKLENLVIVEVREQAYLWQSETRLLQDIRSLNRLHISRCPRLLSLVTDEEHDQQQPESPYRLRFLEL-KIFIYD 570 (788)
Q Consensus 492 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~l~~L~L-~L~l~~ 570 (788)
..+..+++|+.|++++|.....+ |..+.++++|+.|++++|+.+..+|... .+++ | .+.+++
T Consensus 772 ~~~~~~~sL~~L~Ls~n~~l~~l----P~si~~L~~L~~L~Ls~C~~L~~LP~~~----~L~s---------L~~L~Ls~ 834 (1153)
T PLN03210 772 LMTMLSPSLTRLFLSDIPSLVEL----PSSIQNLHKLEHLEIENCINLETLPTGI----NLES---------LESLDLSG 834 (1153)
T ss_pred hhhhccccchheeCCCCCCcccc----ChhhhCCCCCCEEECCCCCCcCeeCCCC----Cccc---------cCEEECCC
Confidence 22345678999999999888777 8889999999999999999998887641 2344 7 999999
Q ss_pred ccCcccccccccCCCCcceEEEecCCCCcccCCCCCCCCcccEEEeccccccccccccc---CccceEeccCCCCCCCCC
Q 003899 571 LENLQSLPAGLHNLRHLQKIWISKCPNLESFPEEGLPSAKLTELMIWRCENLKALPNSM---SSLLRLGIIGCPSLESFP 647 (788)
Q Consensus 571 ~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~---~~L~~L~l~~c~~l~~~~ 647 (788)
|..+..+|.. .++|+.|++++ +.++.+|.....+++|+.|++.+|+.++.+|... .+|+.+++++|..++.++
T Consensus 835 c~~L~~~p~~---~~nL~~L~Ls~-n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~~~~ 910 (1153)
T PLN03210 835 CSRLRTFPDI---STNISDLNLSR-TGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALTEAS 910 (1153)
T ss_pred CCcccccccc---ccccCEeECCC-CCCccChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCccccccc
Confidence 9998888754 46899999998 5788899888889999999999999999887644 478888999999887664
Q ss_pred C
Q 003899 648 E 648 (788)
Q Consensus 648 ~ 648 (788)
.
T Consensus 911 l 911 (1153)
T PLN03210 911 W 911 (1153)
T ss_pred C
Confidence 4
No 10
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.89 E-value=6.9e-26 Score=241.34 Aligned_cols=128 Identities=24% Similarity=0.304 Sum_probs=73.3
Q ss_pred CCCccEEEeccCC--cceecCCcCCCCccEEeccccccceeeccccccCCCCccEEEEecCcccchhhhcccccccCCCC
Q 003899 450 LPALSELQIDGCE--RVVFSSPIDLSSLKSVHLAYVANEVVLAGLFEQGLPKLENLVIVEVREQAYLWQSETRLLQDIRS 527 (788)
Q Consensus 450 ~~~L~~L~l~~~~--~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~ 527 (788)
++.|+.|++.+|. ...++.+.++++|+.|++++ +.+..+|...+..+..|++|++++|+.... +..+..+..
T Consensus 358 ~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsy-NrL~~fpas~~~kle~LeeL~LSGNkL~~L-----p~tva~~~~ 431 (1081)
T KOG0618|consen 358 HAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSY-NRLNSFPASKLRKLEELEELNLSGNKLTTL-----PDTVANLGR 431 (1081)
T ss_pred hHHHHHHHHhcCcccccchhhhccccceeeeeecc-cccccCCHHHHhchHHhHHHhcccchhhhh-----hHHHHhhhh
Confidence 4556666666666 23345555666677777766 345666666666666677777777654433 455555666
Q ss_pred CCeEEcccCCCccccccCccccccCCCCcccccceEEEEEecCccCcccccccccCCCCcceEEEecCCCCcccC-CCCC
Q 003899 528 LNRLHISRCPRLLSLVTDEEHDQQQPESPYRLRFLELKIFIYDLENLQSLPAGLHNLRHLQKIWISKCPNLESFP-EEGL 606 (788)
Q Consensus 528 L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~l~~L~L~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~~~-~~~~ 606 (788)
|++|..-+ +.+..+| .+..++.|+.+|++.| .+..+- ....
T Consensus 432 L~tL~ahs------------------------------------N~l~~fP-e~~~l~qL~~lDlS~N-~L~~~~l~~~~ 473 (1081)
T KOG0618|consen 432 LHTLRAHS------------------------------------NQLLSFP-ELAQLPQLKVLDLSCN-NLSEVTLPEAL 473 (1081)
T ss_pred hHHHhhcC------------------------------------Cceeech-hhhhcCcceEEecccc-hhhhhhhhhhC
Confidence 66555443 2233334 3445677777777763 443321 1122
Q ss_pred CCCcccEEEeccccc
Q 003899 607 PSAKLTELMIWRCEN 621 (788)
Q Consensus 607 ~~~~L~~L~l~~c~~ 621 (788)
+-++|++|+++||..
T Consensus 474 p~p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 474 PSPNLKYLDLSGNTR 488 (1081)
T ss_pred CCcccceeeccCCcc
Confidence 226777777777764
No 11
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.88 E-value=2.4e-25 Score=237.23 Aligned_cols=108 Identities=29% Similarity=0.351 Sum_probs=90.6
Q ss_pred HhCCCCCeeEEEccCCcCcccccccccCCCCCceeeccCCcccccchhhhccccCcEEEccCccchhhchhhhhcccCCc
Q 003899 113 MLMNLPRLRVFSLHGYSNIIELPNEIENLKHLRFLNLSRTSIQILPESINSLYNLNTILLEDCYQLKKLCNDMGNLKKLR 192 (788)
Q Consensus 113 ~~~~l~~Lr~L~L~~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~ 192 (788)
+..+.-+|++||+++| .+..+|..+..+.+|+.|+++.|.|.++|.+++++.+|++|+|.+| .+..+|.++..+++|+
T Consensus 40 ~~~~~v~L~~l~lsnn-~~~~fp~~it~l~~L~~ln~s~n~i~~vp~s~~~~~~l~~lnL~~n-~l~~lP~~~~~lknl~ 117 (1081)
T KOG0618|consen 40 FVEKRVKLKSLDLSNN-QISSFPIQITLLSHLRQLNLSRNYIRSVPSSCSNMRNLQYLNLKNN-RLQSLPASISELKNLQ 117 (1081)
T ss_pred HhhheeeeEEeecccc-ccccCCchhhhHHHHhhcccchhhHhhCchhhhhhhcchhheeccc-hhhcCchhHHhhhccc
Confidence 4444555889999988 8888888888888999999999988888888888999999999888 8888898899999999
Q ss_pred eEecCCCcCcccCCccCcCCCCcceeCceEe
Q 003899 193 HLKSSNVDSLEEMPKGFGKLTCLLTLGTFVV 223 (788)
Q Consensus 193 ~L~l~~~~~l~~~p~~i~~l~~L~~L~~~~~ 223 (788)
+|++++|. +..+|.-+..++.+.++...++
T Consensus 118 ~LdlS~N~-f~~~Pl~i~~lt~~~~~~~s~N 147 (1081)
T KOG0618|consen 118 YLDLSFNH-FGPIPLVIEVLTAEEELAASNN 147 (1081)
T ss_pred ccccchhc-cCCCchhHHhhhHHHHHhhhcc
Confidence 99999888 8888888888887777776554
No 12
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.87 E-value=1.1e-24 Score=221.65 Aligned_cols=366 Identities=21% Similarity=0.260 Sum_probs=218.0
Q ss_pred CCCCeeEEEccCCcCc-ccccccccCCCCCceeeccCCcccccchhhhccccCcEEEccCccchhhchhhhhcccCCceE
Q 003899 116 NLPRLRVFSLHGYSNI-IELPNEIENLKHLRFLNLSRTSIQILPESINSLYNLNTILLEDCYQLKKLCNDMGNLKKLRHL 194 (788)
Q Consensus 116 ~l~~Lr~L~L~~~~~l-~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L 194 (788)
-++-.|-.|+++|..- ..+|.+...|.+++.|.|..+++..+|++++.|.+|++|.+++| .+..+-..++.|+.||.+
T Consensus 5 VLpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN-~L~~vhGELs~Lp~LRsv 83 (1255)
T KOG0444|consen 5 VLPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHN-QLISVHGELSDLPRLRSV 83 (1255)
T ss_pred ccceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhhhChHHHHHHhhhhhhhhhhh-hhHhhhhhhccchhhHHH
Confidence 3556777788888322 46788888888888888888888888888888888888888888 677776678888888888
Q ss_pred ecCCCcCcc--cCCccCcCCCCcceeCceEeCCCCCCCcccccccccCCceeEEeccCCCCCchhhhhcccCCCcCCceE
Q 003899 195 KSSNVDSLE--EMPKGFGKLTCLLTLGTFVVGKDGGSGLRELKSLTHLQGTLQISKLENVKDVGDACEAQLNSKENLQAL 272 (788)
Q Consensus 195 ~l~~~~~l~--~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L 272 (788)
.+..|. ++ -+|.+|-.|..|..|+++++. |+
T Consensus 84 ~~R~N~-LKnsGiP~diF~l~dLt~lDLShNq---------------L~------------------------------- 116 (1255)
T KOG0444|consen 84 IVRDNN-LKNSGIPTDIFRLKDLTILDLSHNQ---------------LR------------------------------- 116 (1255)
T ss_pred hhhccc-cccCCCCchhcccccceeeecchhh---------------hh-------------------------------
Confidence 888887 43 377777777777777764431 11
Q ss_pred EEEeecCcccCccchhhhhhhcccCccccccceEEEEeeCCCCCCcccCCCCCCCeeEEEECCCCCCCCCC-CCCCCCcc
Q 003899 273 LLKWSTRDVQNLDQCEFETHVLSVLKPHQDVQELTITGYGGTKFPIWLGDSSFSKLARLELCRCTSTSLPS-VGQLPFLM 351 (788)
Q Consensus 273 ~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~L~~~~~~~l~~-l~~l~~L~ 351 (788)
..+..+....++-.|++++|.+..+|..+. ..+..|-.|++++|+++.+|+ +..+.+|+
T Consensus 117 -------------------EvP~~LE~AKn~iVLNLS~N~IetIPn~lf-inLtDLLfLDLS~NrLe~LPPQ~RRL~~Lq 176 (1255)
T KOG0444|consen 117 -------------------EVPTNLEYAKNSIVLNLSYNNIETIPNSLF-INLTDLLFLDLSNNRLEMLPPQIRRLSMLQ 176 (1255)
T ss_pred -------------------hcchhhhhhcCcEEEEcccCccccCCchHH-HhhHhHhhhccccchhhhcCHHHHHHhhhh
Confidence 122233334667788899998888887654 367778888999999877776 88888899
Q ss_pred EEEecCCCCceEeCcccccCCCCCCCCCcceEeccccc-ccccccccCCCCcccccCCcccEEeeecCcccccCCCCCCC
Q 003899 352 ELDISGMDGVKSVGSEFYRRSCSVPFPSLETLSFSDMR-EWEEWIPCGAGQEVDEVFPKLRKLSLFNCHKLQGKLPKRLL 430 (788)
Q Consensus 352 ~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~lp~~l~ 430 (788)
.|.|++|+.... .-....++.+|++|.+++.. .+..++. ....+.+|..++++.| ++. .+|
T Consensus 177 tL~Ls~NPL~hf------QLrQLPsmtsL~vLhms~TqRTl~N~Pt------sld~l~NL~dvDlS~N-~Lp-~vP---- 238 (1255)
T KOG0444|consen 177 TLKLSNNPLNHF------QLRQLPSMTSLSVLHMSNTQRTLDNIPT------SLDDLHNLRDVDLSEN-NLP-IVP---- 238 (1255)
T ss_pred hhhcCCChhhHH------HHhcCccchhhhhhhcccccchhhcCCC------chhhhhhhhhcccccc-CCC-cch----
Confidence 999988863211 00001113344444444321 1222222 3344555555555554 333 333
Q ss_pred CccEEEEeccCCcccccCCCCCccEEEeccCCcceecC-CcCCCCccEEeccccccceeeccccccCCCCccEEEEecCc
Q 003899 431 LLETLVIKSCQQLLVTIQCLPALSELQIDGCERVVFSS-PIDLSSLKSVHLAYVANEVVLAGLFEQGLPKLENLVIVEVR 509 (788)
Q Consensus 431 ~L~~L~l~~c~~l~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 509 (788)
+.+-++++|+.|++++|....... .....+|++|+++.| .++.+|.. ...++.|++|.+.+|+
T Consensus 239 --------------ecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrN-QLt~LP~a-vcKL~kL~kLy~n~Nk 302 (1255)
T KOG0444|consen 239 --------------ECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRN-QLTVLPDA-VCKLTKLTKLYANNNK 302 (1255)
T ss_pred --------------HHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccc-hhccchHH-HhhhHHHHHHHhccCc
Confidence 233345555556666555333222 223455555555553 34444444 2445555555555554
Q ss_pred ccchhhhcccccccCCCCCCeEEcccCCCccccccCccccccCCCCcccccceEEEEEecCccCcccccccccCCCCcce
Q 003899 510 EQAYLWQSETRLLQDIRSLNRLHISRCPRLLSLVTDEEHDQQQPESPYRLRFLELKIFIYDLENLQSLPAGLHNLRHLQK 589 (788)
Q Consensus 510 ~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~l~~L~L~L~l~~~~~l~~l~~~~~~l~~L~~ 589 (788)
..- ++.|++++.+.+|+.+...+ +.++-+|++++.|..|+.
T Consensus 303 L~F---eGiPSGIGKL~~Levf~aan------------------------------------N~LElVPEglcRC~kL~k 343 (1255)
T KOG0444|consen 303 LTF---EGIPSGIGKLIQLEVFHAAN------------------------------------NKLELVPEGLCRCVKLQK 343 (1255)
T ss_pred ccc---cCCccchhhhhhhHHHHhhc------------------------------------cccccCchhhhhhHHHHH
Confidence 321 11155555555555555544 233444555555555555
Q ss_pred EEEecCCCCcccCCCCCCCCcccEEEeccccccc
Q 003899 590 IWISKCPNLESFPEEGLPSAKLTELMIWRCENLK 623 (788)
Q Consensus 590 L~l~~c~~l~~~~~~~~~~~~L~~L~l~~c~~l~ 623 (788)
|.+++ +.+-.+|..+.-++.|+.|++..|+.+.
T Consensus 344 L~L~~-NrLiTLPeaIHlL~~l~vLDlreNpnLV 376 (1255)
T KOG0444|consen 344 LKLDH-NRLITLPEAIHLLPDLKVLDLRENPNLV 376 (1255)
T ss_pred hcccc-cceeechhhhhhcCCcceeeccCCcCcc
Confidence 55554 3444555555555555555555555544
No 13
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.87 E-value=4.7e-24 Score=217.08 Aligned_cols=150 Identities=21% Similarity=0.245 Sum_probs=100.5
Q ss_pred ceeEEEEEccCCccccccccccCCCceeEEEeccCCccccchhhhhHHHHhCCCCCeeEEEccCCcCcccccccccCCCC
Q 003899 64 SLRHFSYICGESDGEKRLQSVCDVEHLRTFLPVNLSNYRINYLAWSVLQMLMNLPRLRVFSLHGYSNIIELPNEIENLKH 143 (788)
Q Consensus 64 ~~r~lsl~~~~~~~~~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~l~~lp~~~~~l~~ 143 (788)
-||.+.+.+++.....-..++..+++++.|.+.... ...+|+.++.+.+|..|.+..| .+.++...+..|+.
T Consensus 8 FVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~-------L~~vPeEL~~lqkLEHLs~~HN-~L~~vhGELs~Lp~ 79 (1255)
T KOG0444|consen 8 FVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTK-------LEQVPEELSRLQKLEHLSMAHN-QLISVHGELSDLPR 79 (1255)
T ss_pred eeecccccCCcCCCCcCchhHHHhhheeEEEechhh-------hhhChHHHHHHhhhhhhhhhhh-hhHhhhhhhccchh
Confidence 456666666654433333455567777777665542 2556666777777777777777 66666666777777
Q ss_pred CceeeccCCccc--ccchhhhccccCcEEEccCccchhhchhhhhcccCCceEecCCCcCcccCCcc-CcCCCCcceeCc
Q 003899 144 LRFLNLSRTSIQ--ILPESINSLYNLNTILLEDCYQLKKLCNDMGNLKKLRHLKSSNVDSLEEMPKG-FGKLTCLLTLGT 220 (788)
Q Consensus 144 L~~L~L~~~~i~--~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~-i~~l~~L~~L~~ 220 (788)
||.++++.|++. -+|..|.+|..|.+|||++| .+.+.|.++...+++-+|++++|. +..||.. +-+|+.|-.|++
T Consensus 80 LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShN-qL~EvP~~LE~AKn~iVLNLS~N~-IetIPn~lfinLtDLLfLDL 157 (1255)
T KOG0444|consen 80 LRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHN-QLREVPTNLEYAKNSIVLNLSYNN-IETIPNSLFINLTDLLFLDL 157 (1255)
T ss_pred hHHHhhhccccccCCCCchhcccccceeeecchh-hhhhcchhhhhhcCcEEEEcccCc-cccCCchHHHhhHhHhhhcc
Confidence 777777777765 46777777777777777777 677777777777777777777777 7777766 566666666666
Q ss_pred eEe
Q 003899 221 FVV 223 (788)
Q Consensus 221 ~~~ 223 (788)
+++
T Consensus 158 S~N 160 (1255)
T KOG0444|consen 158 SNN 160 (1255)
T ss_pred ccc
Confidence 554
No 14
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.60 E-value=5.7e-15 Score=164.17 Aligned_cols=211 Identities=21% Similarity=0.175 Sum_probs=125.9
Q ss_pred CCeeEEEccCCcCcccccccccCCCCCceeeccCCcccccchhhhccccCcEEEccCccchhhchhhhhcccCCceEecC
Q 003899 118 PRLRVFSLHGYSNIIELPNEIENLKHLRFLNLSRTSIQILPESINSLYNLNTILLEDCYQLKKLCNDMGNLKKLRHLKSS 197 (788)
Q Consensus 118 ~~Lr~L~L~~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~ 197 (788)
..-.+|+++++ .++++|..+. .+|+.|++.+|+++.+|.. +++|++|++++| .++.+|.. .++|+.|+++
T Consensus 201 ~~~~~LdLs~~-~LtsLP~~l~--~~L~~L~L~~N~Lt~LP~l---p~~Lk~LdLs~N-~LtsLP~l---p~sL~~L~Ls 270 (788)
T PRK15387 201 NGNAVLNVGES-GLTTLPDCLP--AHITTLVIPDNNLTSLPAL---PPELRTLEVSGN-QLTSLPVL---PPGLLELSIF 270 (788)
T ss_pred CCCcEEEcCCC-CCCcCCcchh--cCCCEEEccCCcCCCCCCC---CCCCcEEEecCC-ccCcccCc---ccccceeecc
Confidence 44668899998 8888888775 3789999999999888853 578888999888 77788753 4678888888
Q ss_pred CCcCcccCCccCcCCCCcceeCceEeCCCCCCCcccccccccCCceeEEeccCCCCCchhhhhcccCCCcCCceEEEEee
Q 003899 198 NVDSLEEMPKGFGKLTCLLTLGTFVVGKDGGSGLRELKSLTHLQGTLQISKLENVKDVGDACEAQLNSKENLQALLLKWS 277 (788)
Q Consensus 198 ~~~~l~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 277 (788)
+|. +..+|... ++|+.|++.++
T Consensus 271 ~N~-L~~Lp~lp---~~L~~L~Ls~N------------------------------------------------------ 292 (788)
T PRK15387 271 SNP-LTHLPALP---SGLCKLWIFGN------------------------------------------------------ 292 (788)
T ss_pred CCc-hhhhhhch---hhcCEEECcCC------------------------------------------------------
Confidence 887 66665432 23334433221
Q ss_pred cCcccCccchhhhhhhcccCccccccceEEEEeeCCCCCCcccCCCCCCCeeEEEECCCCCCCCCCCCCCCCccEEEecC
Q 003899 278 TRDVQNLDQCEFETHVLSVLKPHQDVQELTITGYGGTKFPIWLGDSSFSKLARLELCRCTSTSLPSVGQLPFLMELDISG 357 (788)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~L~~~~~~~l~~l~~l~~L~~L~l~~ 357 (788)
.. . ..+. .+++|+.|++++|....+|. .+.+|+.|.+++|.+..+|.+. ++|++|++++
T Consensus 293 ~L----------t-~LP~---~p~~L~~LdLS~N~L~~Lp~-----lp~~L~~L~Ls~N~L~~LP~lp--~~Lq~LdLS~ 351 (788)
T PRK15387 293 QL----------T-SLPV---LPPGLQELSVSDNQLASLPA-----LPSELCKLWAYNNQLTSLPTLP--SGLQELSVSD 351 (788)
T ss_pred cc----------c-cccc---cccccceeECCCCccccCCC-----CcccccccccccCccccccccc--cccceEecCC
Confidence 11 0 0000 12457777777776666654 2345777788887776666432 4678888877
Q ss_pred CCCceEeCcccccCCCCCCCCCcceEecccccccccccccCCCCcccccCCcccEEeeecCcccccCCCCCCCCccEEEE
Q 003899 358 MDGVKSVGSEFYRRSCSVPFPSLETLSFSDMREWEEWIPCGAGQEVDEVFPKLRKLSLFNCHKLQGKLPKRLLLLETLVI 437 (788)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~lp~~l~~L~~L~l 437 (788)
|. +..++.. +++|+.|++.+ +.+..++. ..++|+.|++++| .+. .+|..+++|+.|++
T Consensus 352 N~-Ls~LP~l---------p~~L~~L~Ls~-N~L~~LP~---------l~~~L~~LdLs~N-~Lt-~LP~l~s~L~~LdL 409 (788)
T PRK15387 352 NQ-LASLPTL---------PSELYKLWAYN-NRLTSLPA---------LPSGLKELIVSGN-RLT-SLPVLPSELKELMV 409 (788)
T ss_pred Cc-cCCCCCC---------Ccccceehhhc-cccccCcc---------cccccceEEecCC-ccc-CCCCcccCCCEEEc
Confidence 64 3333321 34555565554 23333322 1235566666655 444 34443333444433
Q ss_pred ec
Q 003899 438 KS 439 (788)
Q Consensus 438 ~~ 439 (788)
++
T Consensus 410 S~ 411 (788)
T PRK15387 410 SG 411 (788)
T ss_pred cC
Confidence 33
No 15
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.60 E-value=2.4e-17 Score=160.14 Aligned_cols=110 Identities=27% Similarity=0.361 Sum_probs=59.9
Q ss_pred hhHHH-HhCCCCCeeEEEccCCcCcccc-cccccCCCCCceeeccC-Ccccccc-hhhhccccCcEEEccCccchhhchh
Q 003899 108 WSVLQ-MLMNLPRLRVFSLHGYSNIIEL-PNEIENLKHLRFLNLSR-TSIQILP-ESINSLYNLNTILLEDCYQLKKLCN 183 (788)
Q Consensus 108 ~~~~~-~~~~l~~Lr~L~L~~~~~l~~l-p~~~~~l~~L~~L~L~~-~~i~~lp-~~i~~L~~L~~L~L~~~~~l~~lp~ 183 (788)
..+|+ +|+.+++||.|||+.| .|+.| |++|.+++.|-.|-+.+ |+|+++| ..|+.|..||.|.+.-| .+..++.
T Consensus 80 ~~iP~~aF~~l~~LRrLdLS~N-~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan-~i~Cir~ 157 (498)
T KOG4237|consen 80 SSIPPGAFKTLHRLRRLDLSKN-NISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNAN-HINCIRQ 157 (498)
T ss_pred ccCChhhccchhhhceeccccc-chhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChh-hhcchhH
Confidence 34444 5666666666666655 55555 45555555555555544 5555555 34555556665555555 4444443
Q ss_pred h-hhcccCCceEecCCCcCcccCCcc-CcCCCCcceeCc
Q 003899 184 D-MGNLKKLRHLKSSNVDSLEEMPKG-FGKLTCLLTLGT 220 (788)
Q Consensus 184 ~-i~~L~~L~~L~l~~~~~l~~~p~~-i~~l~~L~~L~~ 220 (788)
+ +..|++|..|.+.+|. ++.++.+ +..+..++++.+
T Consensus 158 ~al~dL~~l~lLslyDn~-~q~i~~~tf~~l~~i~tlhl 195 (498)
T KOG4237|consen 158 DALRDLPSLSLLSLYDNK-IQSICKGTFQGLAAIKTLHL 195 (498)
T ss_pred HHHHHhhhcchhcccchh-hhhhccccccchhccchHhh
Confidence 3 5555566555555555 5555543 555555555544
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.54 E-value=8.2e-14 Score=155.07 Aligned_cols=133 Identities=29% Similarity=0.382 Sum_probs=82.2
Q ss_pred cceEEEecCCCCcccCCCCCCCCcccEEEecccccccccccccCccceEeccCCCCCCCCCCCCCCCCccEEEEeccCCC
Q 003899 587 LQKIWISKCPNLESFPEEGLPSAKLTELMIWRCENLKALPNSMSSLLRLGIIGCPSLESFPEDGFPTNLQSLEVRDLKIT 666 (788)
Q Consensus 587 L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~~~~~ 666 (788)
|+.|++++| .++.+|.. ..+|++|++++| .++.+|....+|+.|++++ +.+..+|. .+.+|+.|++++|...
T Consensus 324 L~~L~Ls~N-~L~~LP~l---p~~Lq~LdLS~N-~Ls~LP~lp~~L~~L~Ls~-N~L~~LP~--l~~~L~~LdLs~N~Lt 395 (788)
T PRK15387 324 LCKLWAYNN-QLTSLPTL---PSGLQELSVSDN-QLASLPTLPSELYKLWAYN-NRLTSLPA--LPSGLKELIVSGNRLT 395 (788)
T ss_pred ccccccccC-cccccccc---ccccceEecCCC-ccCCCCCCCcccceehhhc-cccccCcc--cccccceEEecCCccc
Confidence 444445542 34444421 134555555543 3444444444556666654 34555553 2356777777665433
Q ss_pred CcccccccCCCCCccEEEEcCCCCCcccCCCCCCCCCeEecCCCCCcccchhhcCCCCCCCceecccCC
Q 003899 667 KPLLEWGLNRFTSLRNLSIGGGYPDLLSSPPFPASLTELWISDMPDLECLSSISENLTSLEFLYLIDCP 735 (788)
Q Consensus 667 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~ 735 (788)
.++. ..++|+.|++++ +.+..+|..+.+|+.|++++ |.++.+|..+..+++|+.|++++|+
T Consensus 396 -~LP~----l~s~L~~LdLS~--N~LssIP~l~~~L~~L~Ls~-NqLt~LP~sl~~L~~L~~LdLs~N~ 456 (788)
T PRK15387 396 -SLPV----LPSELKELMVSG--NRLTSLPMLPSGLLSLSVYR-NQLTRLPESLIHLSSETTVNLEGNP 456 (788)
T ss_pred -CCCC----cccCCCEEEccC--CcCCCCCcchhhhhhhhhcc-CcccccChHHhhccCCCeEECCCCC
Confidence 3332 135677888887 56777777777888888888 6888899888889999999999985
No 17
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.51 E-value=1.7e-14 Score=164.16 Aligned_cols=261 Identities=25% Similarity=0.301 Sum_probs=171.8
Q ss_pred cccCCCceeEEEeccCCccccchhhhhHHHHhCCCCCeeEEEccCCcC-ccccc-ccccCCCCCceeeccCCc-ccccch
Q 003899 83 SVCDVEHLRTFLPVNLSNYRINYLAWSVLQMLMNLPRLRVFSLHGYSN-IIELP-NEIENLKHLRFLNLSRTS-IQILPE 159 (788)
Q Consensus 83 ~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~-l~~lp-~~~~~l~~L~~L~L~~~~-i~~lp~ 159 (788)
...+....|...+.++.. ..++. -...+.|++|-+.+|.. +..++ ..|..|+.||+|||++|. +.++|.
T Consensus 518 ~~~~~~~~rr~s~~~~~~-------~~~~~-~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~ 589 (889)
T KOG4658|consen 518 QVKSWNSVRRMSLMNNKI-------EHIAG-SSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPS 589 (889)
T ss_pred cccchhheeEEEEeccch-------hhccC-CCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCCh
Confidence 344556777777766531 22222 23445799999999942 67776 447999999999999764 679999
Q ss_pred hhhccccCcEEEccCccchhhchhhhhcccCCceEecCCCcCcccCCccCcCCCCcceeCceEeC-CCCCCCcccccccc
Q 003899 160 SINSLYNLNTILLEDCYQLKKLCNDMGNLKKLRHLKSSNVDSLEEMPKGFGKLTCLLTLGTFVVG-KDGGSGLRELKSLT 238 (788)
Q Consensus 160 ~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~i~~l~~L~~L~~~~~~-~~~~~~~~~l~~L~ 238 (788)
+|+.|.+||+|+++++ .+..+|.++++|++|.+|++..+..+..+|..+..|.+||+|.++... ..+...+.++.+|.
T Consensus 590 ~I~~Li~LryL~L~~t-~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le 668 (889)
T KOG4658|consen 590 SIGELVHLRYLDLSDT-GISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLE 668 (889)
T ss_pred HHhhhhhhhcccccCC-CccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhccc
Confidence 9999999999999999 899999999999999999999998777776667789999999997765 33355667777777
Q ss_pred cCCceeEEeccCCCCCchhhhhcccCCCcCCceEEEEeecCcccCccchhhhhhhcccCccccccceEEEEeeCCCCCC-
Q 003899 239 HLQGTLQISKLENVKDVGDACEAQLNSKENLQALLLKWSTRDVQNLDQCEFETHVLSVLKPHQDVQELTITGYGGTKFP- 317 (788)
Q Consensus 239 ~L~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p- 317 (788)
+|+ .+.+..... ... ..+..+..|.++...-... ..........+..+.+|+.|.+.++.+....
T Consensus 669 ~L~-~ls~~~~s~-~~~-----e~l~~~~~L~~~~~~l~~~-------~~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~ 734 (889)
T KOG4658|consen 669 HLE-NLSITISSV-LLL-----EDLLGMTRLRSLLQSLSIE-------GCSKRTLISSLGSLGNLEELSILDCGISEIVI 734 (889)
T ss_pred chh-hheeecchh-HhH-----hhhhhhHHHHHHhHhhhhc-------ccccceeecccccccCcceEEEEcCCCchhhc
Confidence 776 554432211 000 0111122222111100000 0012233455666788888888877665332
Q ss_pred cccCC---CC-CCCeeEEEECCCCC-CCCCCCCCCCCccEEEecCCCCceEeCc
Q 003899 318 IWLGD---SS-FSKLARLELCRCTS-TSLPSVGQLPFLMELDISGMDGVKSVGS 366 (788)
Q Consensus 318 ~~~~~---~~-~~~L~~L~L~~~~~-~~l~~l~~l~~L~~L~l~~~~~~~~~~~ 366 (788)
.|... .. |+++..+.+.+|.. ..+.+....|+|+.|.+..|..++.+..
T Consensus 735 ~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~~~~f~~~L~~l~l~~~~~~e~~i~ 788 (889)
T KOG4658|consen 735 EWEESLIVLLCFPNLSKVSILNCHMLRDLTWLLFAPHLTSLSLVSCRLLEDIIP 788 (889)
T ss_pred ccccccchhhhHHHHHHHHhhccccccccchhhccCcccEEEEecccccccCCC
Confidence 23221 11 55666666667766 5555566677888888888876665543
No 18
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.49 E-value=4.7e-16 Score=133.41 Aligned_cols=107 Identities=27% Similarity=0.326 Sum_probs=72.1
Q ss_pred CCCCCeeEEEccCCcCcccccccccCCCCCceeeccCCcccccchhhhccccCcEEEccCccchhhchhhhhcccCCceE
Q 003899 115 MNLPRLRVFSLHGYSNIIELPNEIENLKHLRFLNLSRTSIQILPESINSLYNLNTILLEDCYQLKKLCNDMGNLKKLRHL 194 (788)
Q Consensus 115 ~~l~~Lr~L~L~~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L 194 (788)
..+.++..|-|+.| .+..+|..|..+.+|++|++.+|+|.++|.+|+.+++|++|+++-| .+..+|.+|+.++.|++|
T Consensus 30 f~~s~ITrLtLSHN-Kl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmn-rl~~lprgfgs~p~levl 107 (264)
T KOG0617|consen 30 FNMSNITRLTLSHN-KLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMN-RLNILPRGFGSFPALEVL 107 (264)
T ss_pred cchhhhhhhhcccC-ceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchh-hhhcCccccCCCchhhhh
Confidence 34555666667777 7777777777777777777777777777777777777777777766 667777777777777777
Q ss_pred ecCCCcC-cccCCccCcCCCCcceeCceEe
Q 003899 195 KSSNVDS-LEEMPKGFGKLTCLLTLGTFVV 223 (788)
Q Consensus 195 ~l~~~~~-l~~~p~~i~~l~~L~~L~~~~~ 223 (788)
|+.+|.. -..+|..|..|+.|+.|++.++
T Consensus 108 dltynnl~e~~lpgnff~m~tlralyl~dn 137 (264)
T KOG0617|consen 108 DLTYNNLNENSLPGNFFYMTTLRALYLGDN 137 (264)
T ss_pred hccccccccccCCcchhHHHHHHHHHhcCC
Confidence 7776652 1235555666666666665443
No 19
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.48 E-value=7e-16 Score=132.36 Aligned_cols=149 Identities=21% Similarity=0.298 Sum_probs=109.6
Q ss_pred CceeEEEEEccCCccccccccccCCCceeEEEeccCCccccchhhhhHHHHhCCCCCeeEEEccCCcCcccccccccCCC
Q 003899 63 QSLRHFSYICGESDGEKRLQSVCDVEHLRTFLPVNLSNYRINYLAWSVLQMLMNLPRLRVFSLHGYSNIIELPNEIENLK 142 (788)
Q Consensus 63 ~~~r~lsl~~~~~~~~~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~l~~lp~~~~~l~ 142 (788)
..++++.+..+..... .+.+.++.+|++|.++++. ...+|..++.++.||.|++.-| .+..+|..|+.++
T Consensus 33 s~ITrLtLSHNKl~~v--ppnia~l~nlevln~~nnq-------ie~lp~~issl~klr~lnvgmn-rl~~lprgfgs~p 102 (264)
T KOG0617|consen 33 SNITRLTLSHNKLTVV--PPNIAELKNLEVLNLSNNQ-------IEELPTSISSLPKLRILNVGMN-RLNILPRGFGSFP 102 (264)
T ss_pred hhhhhhhcccCceeec--CCcHHHhhhhhhhhcccch-------hhhcChhhhhchhhhheecchh-hhhcCccccCCCc
Confidence 3566677776654332 3456667777777776653 2566667778888888888777 7777788888888
Q ss_pred CCceeeccCCccc--ccchhhhccccCcEEEccCccchhhchhhhhcccCCceEecCCCcCcccCCccCcCCCCcceeCc
Q 003899 143 HLRFLNLSRTSIQ--ILPESINSLYNLNTILLEDCYQLKKLCNDMGNLKKLRHLKSSNVDSLEEMPKGFGKLTCLLTLGT 220 (788)
Q Consensus 143 ~L~~L~L~~~~i~--~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~i~~l~~L~~L~~ 220 (788)
.|++|||.+|++. .+|..|..++.|+.|.|+.| .++.+|.++++|++|+.|.+.+|. +-.+|.+++.++.|++|++
T Consensus 103 ~levldltynnl~e~~lpgnff~m~tlralyl~dn-dfe~lp~dvg~lt~lqil~lrdnd-ll~lpkeig~lt~lrelhi 180 (264)
T KOG0617|consen 103 ALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDN-DFEILPPDVGKLTNLQILSLRDND-LLSLPKEIGDLTRLRELHI 180 (264)
T ss_pred hhhhhhccccccccccCCcchhHHHHHHHHHhcCC-CcccCChhhhhhcceeEEeeccCc-hhhCcHHHHHHHHHHHHhc
Confidence 8888888887776 46777777888888888877 777788888888888888888877 7778888888888888776
Q ss_pred eEe
Q 003899 221 FVV 223 (788)
Q Consensus 221 ~~~ 223 (788)
.++
T Consensus 181 qgn 183 (264)
T KOG0617|consen 181 QGN 183 (264)
T ss_pred ccc
Confidence 554
No 20
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.46 E-value=4e-15 Score=144.87 Aligned_cols=287 Identities=15% Similarity=0.158 Sum_probs=176.9
Q ss_pred cccCCceeEEEEEccCCccccccccccCCCceeEEEeccCCccccchhhhhHHHHhCCCCCeeEEEccCCcCccccc-cc
Q 003899 59 QKFCQSLRHFSYICGESDGEKRLQSVCDVEHLRTFLPVNLSNYRINYLAWSVLQMLMNLPRLRVFSLHGYSNIIELP-NE 137 (788)
Q Consensus 59 ~~~~~~~r~lsl~~~~~~~~~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~l~~lp-~~ 137 (788)
...|..+..+.+..|.+..+. ..+|..+++||.|.+..+. +..--|++|.+++.|-.|-+-++++|+++| ..
T Consensus 63 ~~LP~~tveirLdqN~I~~iP-~~aF~~l~~LRrLdLS~N~------Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~ 135 (498)
T KOG4237|consen 63 ANLPPETVEIRLDQNQISSIP-PGAFKTLHRLRRLDLSKNN------ISFIAPDAFKGLASLLSLVLYGNNKITDLPKGA 135 (498)
T ss_pred ccCCCcceEEEeccCCcccCC-hhhccchhhhceecccccc------hhhcChHhhhhhHhhhHHHhhcCCchhhhhhhH
Confidence 457888888999988876654 3789999999999988864 445556799999999888888744999999 77
Q ss_pred ccCCCCCceeeccCCccccc-chhhhccccCcEEEccCccchhhchh-hhhcccCCceEecCCCcCcccCCccCcCCCCc
Q 003899 138 IENLKHLRFLNLSRTSIQIL-PESINSLYNLNTILLEDCYQLKKLCN-DMGNLKKLRHLKSSNVDSLEEMPKGFGKLTCL 215 (788)
Q Consensus 138 ~~~l~~L~~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~~~l~~lp~-~i~~L~~L~~L~l~~~~~l~~~p~~i~~l~~L 215 (788)
|++|..|+-|.+.-|.+.-+ .+.+..|++|..|.+-.| .+..++. .+..+..++++.+..|..+. .-+|
T Consensus 136 F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn-~~q~i~~~tf~~l~~i~tlhlA~np~ic--------dCnL 206 (498)
T KOG4237|consen 136 FGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDN-KIQSICKGTFQGLAAIKTLHLAQNPFIC--------DCNL 206 (498)
T ss_pred hhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccch-hhhhhccccccchhccchHhhhcCcccc--------cccc
Confidence 89999999999999999977 478899999999999999 8999998 48999999999998886211 1122
Q ss_pred ceeCceEeCCCCCCCcccccccccCCceeEEeccCCCCCchhhhhcccCCCcCCceEEEEeecCcccCccchhhhhhhcc
Q 003899 216 LTLGTFVVGKDGGSGLRELKSLTHLQGTLQISKLENVKDVGDACEAQLNSKENLQALLLKWSTRDVQNLDQCEFETHVLS 295 (788)
Q Consensus 216 ~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 295 (788)
+++.-+.... +...+........ .+......... ...+. ..++.+.-..... +..+......
T Consensus 207 ~wla~~~a~~--~ietsgarc~~p~--rl~~~Ri~q~~--a~kf~------c~~esl~s~~~~~------d~~d~~cP~~ 268 (498)
T KOG4237|consen 207 PWLADDLAMN--PIETSGARCVSPY--RLYYKRINQED--ARKFL------CSLESLPSRLSSE------DFPDSICPAK 268 (498)
T ss_pred chhhhHHhhc--hhhcccceecchH--HHHHHHhcccc--hhhhh------hhHHhHHHhhccc------cCcCCcChHH
Confidence 2221100000 0000000000000 00000000000 00000 0011100000000 0000111223
Q ss_pred cCccccccceEEEEeeCCCCC-CcccCCCCCCCeeEEEECCCCCCCCCC--CCCCCCccEEEecCCCCceEeCcccccCC
Q 003899 296 VLKPHQDVQELTITGYGGTKF-PIWLGDSSFSKLARLELCRCTSTSLPS--VGQLPFLMELDISGMDGVKSVGSEFYRRS 372 (788)
Q Consensus 296 ~l~~~~~L~~L~l~~~~~~~~-p~~~~~~~~~~L~~L~L~~~~~~~l~~--l~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 372 (788)
.+..+++|++|++++|..+.+ +.|+. ....++.|.+..|++..+.. +..+..|+.|+|++|. +..+....+..
T Consensus 269 cf~~L~~L~~lnlsnN~i~~i~~~aFe--~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~-it~~~~~aF~~- 344 (498)
T KOG4237|consen 269 CFKKLPNLRKLNLSNNKITRIEDGAFE--GAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQ-ITTVAPGAFQT- 344 (498)
T ss_pred HHhhcccceEeccCCCccchhhhhhhc--chhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCe-eEEEecccccc-
Confidence 366677788888888777766 55665 67777888888887744443 6777788888888875 44443333222
Q ss_pred CCCCCCCcceEeccc
Q 003899 373 CSVPFPSLETLSFSD 387 (788)
Q Consensus 373 ~~~~~~~L~~L~l~~ 387 (788)
..+|.+|.+-.
T Consensus 345 ----~~~l~~l~l~~ 355 (498)
T KOG4237|consen 345 ----LFSLSTLNLLS 355 (498)
T ss_pred ----cceeeeeehcc
Confidence 55666666654
No 21
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.45 E-value=1.8e-13 Score=153.52 Aligned_cols=227 Identities=21% Similarity=0.265 Sum_probs=144.8
Q ss_pred CCeeEEEccCCcCcccccccccCCCCCceeeccCCcccccchhhhccccCcEEEccCccchhhchhhhhcccCCceEecC
Q 003899 118 PRLRVFSLHGYSNIIELPNEIENLKHLRFLNLSRTSIQILPESINSLYNLNTILLEDCYQLKKLCNDMGNLKKLRHLKSS 197 (788)
Q Consensus 118 ~~Lr~L~L~~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~ 197 (788)
.+..+|+++++ .++.+|..+. .+|+.|+|++|+|+.+|..+. .+|++|++++| .+..+|..+. .+|+.|+++
T Consensus 178 ~~~~~L~L~~~-~LtsLP~~Ip--~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N-~LtsLP~~l~--~~L~~L~Ls 249 (754)
T PRK15370 178 NNKTELRLKIL-GLTTIPACIP--EQITTLILDNNELKSLPENLQ--GNIKTLYANSN-QLTSIPATLP--DTIQEMELS 249 (754)
T ss_pred cCceEEEeCCC-CcCcCCcccc--cCCcEEEecCCCCCcCChhhc--cCCCEEECCCC-ccccCChhhh--ccccEEECc
Confidence 45688999998 8999987664 479999999999999998765 58999999998 7888887664 479999999
Q ss_pred CCcCcccCCccCcCCCCcceeCceEeCCCCCCCcccccccccCCceeEEeccCCCCCchhhhhcccCCCcCCceEEEEee
Q 003899 198 NVDSLEEMPKGFGKLTCLLTLGTFVVGKDGGSGLRELKSLTHLQGTLQISKLENVKDVGDACEAQLNSKENLQALLLKWS 277 (788)
Q Consensus 198 ~~~~l~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 277 (788)
+|. +..+|..+. ++|+.|++..+... .+. ..+. .+|+.|+++.|
T Consensus 250 ~N~-L~~LP~~l~--s~L~~L~Ls~N~L~------------~LP-------------------~~l~--~sL~~L~Ls~N 293 (754)
T PRK15370 250 INR-ITELPERLP--SALQSLDLFHNKIS------------CLP-------------------ENLP--EELRYLSVYDN 293 (754)
T ss_pred CCc-cCcCChhHh--CCCCEEECcCCccC------------ccc-------------------cccC--CCCcEEECCCC
Confidence 998 778887764 46777776443211 010 0010 25666666655
Q ss_pred cCcccCccchhhhhhhcccCccccccceEEEEeeCCCCCCcccCCCCCCCeeEEEECCCCCCCCCC-CCCCCCccEEEec
Q 003899 278 TRDVQNLDQCEFETHVLSVLKPHQDVQELTITGYGGTKFPIWLGDSSFSKLARLELCRCTSTSLPS-VGQLPFLMELDIS 356 (788)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~L~~~~~~~l~~-l~~l~~L~~L~l~ 356 (788)
.. . ..+..+ +++|+.|++++|....+|..+ +++|+.|++++|.+..+|. + .++|+.|+++
T Consensus 294 ~L----------t-~LP~~l--p~sL~~L~Ls~N~Lt~LP~~l----~~sL~~L~Ls~N~Lt~LP~~l--~~sL~~L~Ls 354 (754)
T PRK15370 294 SI----------R-TLPAHL--PSGITHLNVQSNSLTALPETL----PPGLKTLEAGENALTSLPASL--PPELQVLDVS 354 (754)
T ss_pred cc----------c-cCcccc--hhhHHHHHhcCCccccCCccc----cccceeccccCCccccCChhh--cCcccEEECC
Confidence 43 0 011111 246777777777776666443 3577777777777755554 2 2577777777
Q ss_pred CCCCceEeCcccccCCCCCCCCCcceEecccccccccccccCCCCcccccCCcccEEeeecCcccccCCCC
Q 003899 357 GMDGVKSVGSEFYRRSCSVPFPSLETLSFSDMREWEEWIPCGAGQEVDEVFPKLRKLSLFNCHKLQGKLPK 427 (788)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~lp~ 427 (788)
+|. +..++..+ .++|+.|+++++ .+..++. . ..+.|+.|++++| ++. .+|.
T Consensus 355 ~N~-L~~LP~~l--------p~~L~~LdLs~N-~Lt~LP~------~--l~~sL~~LdLs~N-~L~-~LP~ 405 (754)
T PRK15370 355 KNQ-ITVLPETL--------PPTITTLDVSRN-ALTNLPE------N--LPAALQIMQASRN-NLV-RLPE 405 (754)
T ss_pred CCC-CCcCChhh--------cCCcCEEECCCC-cCCCCCH------h--HHHHHHHHhhccC-Ccc-cCch
Confidence 774 33343321 356666766663 3444432 1 1235666666665 454 4443
No 22
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.41 E-value=1e-12 Score=147.46 Aligned_cols=157 Identities=23% Similarity=0.369 Sum_probs=81.3
Q ss_pred CcceEEEecCCCCcccCCCCCCCCcccEEEecccccccccccccC-ccceEeccCCCCCCCCCCCCCCCCccEEEEeccC
Q 003899 586 HLQKIWISKCPNLESFPEEGLPSAKLTELMIWRCENLKALPNSMS-SLLRLGIIGCPSLESFPEDGFPTNLQSLEVRDLK 664 (788)
Q Consensus 586 ~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~-~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~~~ 664 (788)
+|+.|++++ +.++.+|.... ++|+.|++++| .++.+|..++ +|+.|++++| .++.+|.. ++++|+.|++.+|.
T Consensus 263 ~L~~L~Ls~-N~L~~LP~~l~--~sL~~L~Ls~N-~Lt~LP~~lp~sL~~L~Ls~N-~Lt~LP~~-l~~sL~~L~Ls~N~ 336 (754)
T PRK15370 263 ALQSLDLFH-NKISCLPENLP--EELRYLSVYDN-SIRTLPAHLPSGITHLNVQSN-SLTALPET-LPPGLKTLEAGENA 336 (754)
T ss_pred CCCEEECcC-CccCccccccC--CCCcEEECCCC-ccccCcccchhhHHHHHhcCC-ccccCCcc-ccccceeccccCCc
Confidence 455555554 34445554332 35555555554 3444444333 5555666553 34444432 33466666665554
Q ss_pred CCCcccccccCCCCCccEEEEcCCCCCcccCCC-CCCCCCeEecCCCCCcccchhhcCCCCCCCceecccCCCCcccCCC
Q 003899 665 ITKPLLEWGLNRFTSLRNLSIGGGYPDLLSSPP-FPASLTELWISDMPDLECLSSISENLTSLEFLYLIDCPKLKYFPEQ 743 (788)
Q Consensus 665 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~-~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~ 743 (788)
.. .++. .+ .++|+.|++++ +.+..+|. .+++|+.|+|++| .++.+|..+. .+|+.|++++| +++.+|..
T Consensus 337 Lt-~LP~-~l--~~sL~~L~Ls~--N~L~~LP~~lp~~L~~LdLs~N-~Lt~LP~~l~--~sL~~LdLs~N-~L~~LP~s 406 (754)
T PRK15370 337 LT-SLPA-SL--PPELQVLDVSK--NQITVLPETLPPTITTLDVSRN-ALTNLPENLP--AALQIMQASRN-NLVRLPES 406 (754)
T ss_pred cc-cCCh-hh--cCcccEEECCC--CCCCcCChhhcCCcCEEECCCC-cCCCCCHhHH--HHHHHHhhccC-CcccCchh
Confidence 32 2332 11 24566666666 34555555 4556666666663 5666665432 35666666666 55565541
Q ss_pred -----CCcCCcceEeecCCh
Q 003899 744 -----GLPKSLSRLSIHNCP 758 (788)
Q Consensus 744 -----~~~~~L~~L~i~~c~ 758 (788)
+..+++..+++.++|
T Consensus 407 l~~~~~~~~~l~~L~L~~Np 426 (754)
T PRK15370 407 LPHFRGEGPQPTRIIVEYNP 426 (754)
T ss_pred HHHHhhcCCCccEEEeeCCC
Confidence 122456666666665
No 23
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.09 E-value=2.9e-11 Score=126.38 Aligned_cols=263 Identities=20% Similarity=0.119 Sum_probs=135.1
Q ss_pred cCCCceeEEEeccCCccccchhhhhHHHHhCCCCCeeEEEccCCcCccc-------ccccccCCCCCceeeccCCccc-c
Q 003899 85 CDVEHLRTFLPVNLSNYRINYLAWSVLQMLMNLPRLRVFSLHGYSNIIE-------LPNEIENLKHLRFLNLSRTSIQ-I 156 (788)
Q Consensus 85 ~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~l~~-------lp~~~~~l~~L~~L~L~~~~i~-~ 156 (788)
..+.+|+.+.+.+..-.. .-...++..+...+.++.|+++++ .+.. ++..+..+.+|++|++++|.+. .
T Consensus 20 ~~l~~L~~l~l~~~~l~~--~~~~~i~~~l~~~~~l~~l~l~~~-~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 96 (319)
T cd00116 20 PKLLCLQVLRLEGNTLGE--EAAKALASALRPQPSLKELCLSLN-ETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPD 96 (319)
T ss_pred HHHhhccEEeecCCCCcH--HHHHHHHHHHhhCCCceEEecccc-ccCCcchHHHHHHHHHHhcCceeEEEccCCCCChh
Confidence 344556666666543100 001233445666677777777776 4431 2345566777777777777765 3
Q ss_pred cchhhhcccc---CcEEEccCccchh-----hchhhhhcc-cCCceEecCCCcCcc-----cCCccCcCCCCcceeCceE
Q 003899 157 LPESINSLYN---LNTILLEDCYQLK-----KLCNDMGNL-KKLRHLKSSNVDSLE-----EMPKGFGKLTCLLTLGTFV 222 (788)
Q Consensus 157 lp~~i~~L~~---L~~L~L~~~~~l~-----~lp~~i~~L-~~L~~L~l~~~~~l~-----~~p~~i~~l~~L~~L~~~~ 222 (788)
.+..+..+.+ |++|++++| .+. .+...+..+ ++|+.|++++|. +. .++..+..+.+|++|++..
T Consensus 97 ~~~~~~~l~~~~~L~~L~ls~~-~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~~~~~~~~~~~~L~~L~l~~ 174 (319)
T cd00116 97 GCGVLESLLRSSSLQELKLNNN-GLGDRGLRLLAKGLKDLPPALEKLVLGRNR-LEGASCEALAKALRANRDLKELNLAN 174 (319)
T ss_pred HHHHHHHHhccCcccEEEeeCC-ccchHHHHHHHHHHHhCCCCceEEEcCCCc-CCchHHHHHHHHHHhCCCcCEEECcC
Confidence 4455555554 777777777 332 233345555 677777777776 33 2233355556666666544
Q ss_pred eCCCCCCCcccccccccCCceeEEeccCCCCCchhhhhcccCCCcCCceEEEEeecCcccCccchhhhhhhcccCccccc
Q 003899 223 VGKDGGSGLRELKSLTHLQGTLQISKLENVKDVGDACEAQLNSKENLQALLLKWSTRDVQNLDQCEFETHVLSVLKPHQD 302 (788)
Q Consensus 223 ~~~~~~~~~~~l~~L~~L~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 302 (788)
+..... ........+...++|+.|+++.+... ..........+..+++
T Consensus 175 n~l~~~--------------------------~~~~l~~~l~~~~~L~~L~L~~n~i~------~~~~~~l~~~~~~~~~ 222 (319)
T cd00116 175 NGIGDA--------------------------GIRALAEGLKANCNLEVLDLNNNGLT------DEGASALAETLASLKS 222 (319)
T ss_pred CCCchH--------------------------HHHHHHHHHHhCCCCCEEeccCCccC------hHHHHHHHHHhcccCC
Confidence 322110 00011112333356666666655430 0111222334455677
Q ss_pred cceEEEEeeCCCCC-----CcccCCCCCCCeeEEEECCCCCC--C---CC-CCCCCCCccEEEecCCCCceEeCcccccC
Q 003899 303 VQELTITGYGGTKF-----PIWLGDSSFSKLARLELCRCTST--S---LP-SVGQLPFLMELDISGMDGVKSVGSEFYRR 371 (788)
Q Consensus 303 L~~L~l~~~~~~~~-----p~~~~~~~~~~L~~L~L~~~~~~--~---l~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~ 371 (788)
|+.|+++++..... ...+. ...+.|+.|++++|.+. . +. .+..+++|+++++++|..... +.....
T Consensus 223 L~~L~ls~n~l~~~~~~~l~~~~~-~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~-~~~~~~- 299 (319)
T cd00116 223 LEVLNLGDNNLTDAGAAALASALL-SPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEE-GAQLLA- 299 (319)
T ss_pred CCEEecCCCcCchHHHHHHHHHHh-ccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHH-HHHHHH-
Confidence 77777777654421 11111 02367888888888762 1 11 245567888888888754322 100000
Q ss_pred CCCCCC-CCcceEeccc
Q 003899 372 SCSVPF-PSLETLSFSD 387 (788)
Q Consensus 372 ~~~~~~-~~L~~L~l~~ 387 (788)
.....+ +.|+++++.+
T Consensus 300 ~~~~~~~~~~~~~~~~~ 316 (319)
T cd00116 300 ESLLEPGNELESLWVKD 316 (319)
T ss_pred HHHhhcCCchhhcccCC
Confidence 011124 6777777765
No 24
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.06 E-value=3e-11 Score=126.33 Aligned_cols=271 Identities=20% Similarity=0.137 Sum_probs=170.2
Q ss_pred hHHHHhCCCCCeeEEEccCCcCc-----ccccccccCCCCCceeeccCCcccc-------cchhhhccccCcEEEccCcc
Q 003899 109 SVLQMLMNLPRLRVFSLHGYSNI-----IELPNEIENLKHLRFLNLSRTSIQI-------LPESINSLYNLNTILLEDCY 176 (788)
Q Consensus 109 ~~~~~~~~l~~Lr~L~L~~~~~l-----~~lp~~~~~l~~L~~L~L~~~~i~~-------lp~~i~~L~~L~~L~L~~~~ 176 (788)
.....|..+..|++|+++++ .+ ..++..+...+.|++|+++++.+.. ++..+..+++|+.|++++|.
T Consensus 14 ~~~~~~~~l~~L~~l~l~~~-~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 92 (319)
T cd00116 14 RATELLPKLLCLQVLRLEGN-TLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNA 92 (319)
T ss_pred chHHHHHHHhhccEEeecCC-CCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCC
Confidence 33446777788999999999 66 3355667788889999999887662 34567788899999999984
Q ss_pred chhhchhhhhcccC---CceEecCCCcCcc-----cCCccCcCC-CCcceeCceEeCCCCCCCcccccccccCCceeEEe
Q 003899 177 QLKKLCNDMGNLKK---LRHLKSSNVDSLE-----EMPKGFGKL-TCLLTLGTFVVGKDGGSGLRELKSLTHLQGTLQIS 247 (788)
Q Consensus 177 ~l~~lp~~i~~L~~---L~~L~l~~~~~l~-----~~p~~i~~l-~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~~~ 247 (788)
.....+..+..+.+ |++|++++|. +. .+...+..+ ++|++|++.++.....
T Consensus 93 ~~~~~~~~~~~l~~~~~L~~L~ls~~~-~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~------------------- 152 (319)
T cd00116 93 LGPDGCGVLESLLRSSSLQELKLNNNG-LGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGA------------------- 152 (319)
T ss_pred CChhHHHHHHHHhccCcccEEEeeCCc-cchHHHHHHHHHHHhCCCCceEEEcCCCcCCch-------------------
Confidence 44455555666666 9999999997 43 223345566 7788887755533210
Q ss_pred ccCCCCCchhhhhcccCCCcCCceEEEEeecCcccCccchhhhhhhcccCccccccceEEEEeeCCCCC-----CcccCC
Q 003899 248 KLENVKDVGDACEAQLNSKENLQALLLKWSTRDVQNLDQCEFETHVLSVLKPHQDVQELTITGYGGTKF-----PIWLGD 322 (788)
Q Consensus 248 ~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-----p~~~~~ 322 (788)
........+..+.+|+.|+++++... . .........+...++|+.|+++++..... +..+.
T Consensus 153 -------~~~~~~~~~~~~~~L~~L~l~~n~l~-----~-~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~- 218 (319)
T cd00116 153 -------SCEALAKALRANRDLKELNLANNGIG-----D-AGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLA- 218 (319)
T ss_pred -------HHHHHHHHHHhCCCcCEEECcCCCCc-----h-HHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhc-
Confidence 01112223455568888888877651 0 11122334455668999999999876422 22332
Q ss_pred CCCCCeeEEEECCCCCCC--CCCC-----CCCCCccEEEecCCCCceEeCcccccCCCCCCCCCcceEeccccccccccc
Q 003899 323 SSFSKLARLELCRCTSTS--LPSV-----GQLPFLMELDISGMDGVKSVGSEFYRRSCSVPFPSLETLSFSDMREWEEWI 395 (788)
Q Consensus 323 ~~~~~L~~L~L~~~~~~~--l~~l-----~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~ 395 (788)
.+++|+.|++++|.+.. +..+ ...+.|++|++++|.....-...+.. ....+++|++++++++ .+....
T Consensus 219 -~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~--~~~~~~~L~~l~l~~N-~l~~~~ 294 (319)
T cd00116 219 -SLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAE--VLAEKESLLELDLRGN-KFGEEG 294 (319)
T ss_pred -ccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHH--HHhcCCCccEEECCCC-CCcHHH
Confidence 57899999999998732 2211 13489999999999532111111100 1122689999999984 333221
Q ss_pred ccCCCCcccccC-CcccEEeeecCc
Q 003899 396 PCGAGQEVDEVF-PKLRKLSLFNCH 419 (788)
Q Consensus 396 ~~~~~~~~~~~~-~~L~~L~l~~c~ 419 (788)
. ..-......+ +.|+++++.+++
T Consensus 295 ~-~~~~~~~~~~~~~~~~~~~~~~~ 318 (319)
T cd00116 295 A-QLLAESLLEPGNELESLWVKDDS 318 (319)
T ss_pred H-HHHHHHHhhcCCchhhcccCCCC
Confidence 0 0000133345 789999998864
No 25
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.01 E-value=3.6e-10 Score=102.95 Aligned_cols=132 Identities=25% Similarity=0.284 Sum_probs=56.0
Q ss_pred ccccCCCceeEEEeccCCccccchhhhhHHHHhC-CCCCeeEEEccCCcCcccccccccCCCCCceeeccCCcccccchh
Q 003899 82 QSVCDVEHLRTFLPVNLSNYRINYLAWSVLQMLM-NLPRLRVFSLHGYSNIIELPNEIENLKHLRFLNLSRTSIQILPES 160 (788)
Q Consensus 82 ~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~-~l~~Lr~L~L~~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~ 160 (788)
....+..++|.|.+.++. ......+. .+.+|++|+|++| .+.+++ .+..+++|++|++++|.|+.+++.
T Consensus 13 ~~~~n~~~~~~L~L~~n~--------I~~Ie~L~~~l~~L~~L~Ls~N-~I~~l~-~l~~L~~L~~L~L~~N~I~~i~~~ 82 (175)
T PF14580_consen 13 AQYNNPVKLRELNLRGNQ--------ISTIENLGATLDKLEVLDLSNN-QITKLE-GLPGLPRLKTLDLSNNRISSISEG 82 (175)
T ss_dssp -------------------------------S--TT-TT--EEE-TTS---S--T-T----TT--EEE--SS---S-CHH
T ss_pred cccccccccccccccccc--------cccccchhhhhcCCCEEECCCC-CCcccc-CccChhhhhhcccCCCCCCccccc
Confidence 445566678888877753 11122343 5788999999999 999884 688899999999999999999766
Q ss_pred h-hccccCcEEEccCccchhhchh--hhhcccCCceEecCCCcCcccCCcc----CcCCCCcceeCceEeCC
Q 003899 161 I-NSLYNLNTILLEDCYQLKKLCN--DMGNLKKLRHLKSSNVDSLEEMPKG----FGKLTCLLTLGTFVVGK 225 (788)
Q Consensus 161 i-~~L~~L~~L~L~~~~~l~~lp~--~i~~L~~L~~L~l~~~~~l~~~p~~----i~~l~~L~~L~~~~~~~ 225 (788)
+ ..+++|+.|++++| .+..+-. .+..+++|++|++.+|+ +...+.- +..+++|+.|+...+..
T Consensus 83 l~~~lp~L~~L~L~~N-~I~~l~~l~~L~~l~~L~~L~L~~NP-v~~~~~YR~~vi~~lP~Lk~LD~~~V~~ 152 (175)
T PF14580_consen 83 LDKNLPNLQELYLSNN-KISDLNELEPLSSLPKLRVLSLEGNP-VCEKKNYRLFVIYKLPSLKVLDGQDVTE 152 (175)
T ss_dssp HHHH-TT--EEE-TTS----SCCCCGGGGG-TT--EEE-TT-G-GGGSTTHHHHHHHH-TT-SEETTEETTS
T ss_pred hHHhCCcCCEEECcCC-cCCChHHhHHHHcCCCcceeeccCCc-ccchhhHHHHHHHHcChhheeCCEEccH
Confidence 6 46899999999998 6655433 36788999999999998 5555432 77889999999866544
No 26
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.89 E-value=1.5e-09 Score=116.73 Aligned_cols=182 Identities=29% Similarity=0.381 Sum_probs=134.1
Q ss_pred HhCCCCCeeEEEccCCcCcccccccccCCC-CCceeeccCCcccccchhhhccccCcEEEccCccchhhchhhhhcccCC
Q 003899 113 MLMNLPRLRVFSLHGYSNIIELPNEIENLK-HLRFLNLSRTSIQILPESINSLYNLNTILLEDCYQLKKLCNDMGNLKKL 191 (788)
Q Consensus 113 ~~~~l~~Lr~L~L~~~~~l~~lp~~~~~l~-~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L 191 (788)
....++.++.|++.+| .+.++|.....+. +|++|++++|.+..+|..++.+++|+.|++++| .+..+|...+.+++|
T Consensus 111 ~~~~~~~l~~L~l~~n-~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N-~l~~l~~~~~~~~~L 188 (394)
T COG4886 111 ELLELTNLTSLDLDNN-NITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFN-DLSDLPKLLSNLSNL 188 (394)
T ss_pred hhhcccceeEEecCCc-ccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCc-hhhhhhhhhhhhhhh
Confidence 4556688999999999 9999988888885 999999999999999988999999999999999 899999877799999
Q ss_pred ceEecCCCcCcccCCccCcCCCCcceeCceEeCCCCCCCcccccccccCCceeEEeccCCCCCchhhhhcccCCCcCCce
Q 003899 192 RHLKSSNVDSLEEMPKGFGKLTCLLTLGTFVVGKDGGSGLRELKSLTHLQGTLQISKLENVKDVGDACEAQLNSKENLQA 271 (788)
Q Consensus 192 ~~L~l~~~~~l~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~ 271 (788)
+.|++++|. +..+|..++.+..|++|.+..+... .
T Consensus 189 ~~L~ls~N~-i~~l~~~~~~~~~L~~l~~~~N~~~-----~--------------------------------------- 223 (394)
T COG4886 189 NNLDLSGNK-ISDLPPEIELLSALEELDLSNNSII-----E--------------------------------------- 223 (394)
T ss_pred hheeccCCc-cccCchhhhhhhhhhhhhhcCCcce-----e---------------------------------------
Confidence 999999999 8999988877777888877544200 0
Q ss_pred EEEEeecCcccCccchhhhhhhcccCccccccceEEEEeeCCCCCCcccCCCCCCCeeEEEECCCCCCCCCCCCCCCCcc
Q 003899 272 LLLKWSTRDVQNLDQCEFETHVLSVLKPHQDVQELTITGYGGTKFPIWLGDSSFSKLARLELCRCTSTSLPSVGQLPFLM 351 (788)
Q Consensus 272 L~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~L~~~~~~~l~~l~~l~~L~ 351 (788)
.+..+....++..+.+.++....++.++. .+++++.|++++|.+..++.++.+.+++
T Consensus 224 ---------------------~~~~~~~~~~l~~l~l~~n~~~~~~~~~~--~l~~l~~L~~s~n~i~~i~~~~~~~~l~ 280 (394)
T COG4886 224 ---------------------LLSSLSNLKNLSGLELSNNKLEDLPESIG--NLSNLETLDLSNNQISSISSLGSLTNLR 280 (394)
T ss_pred ---------------------cchhhhhcccccccccCCceeeeccchhc--cccccceeccccccccccccccccCccC
Confidence 00111112222233333333333344444 5667888888888886676677888888
Q ss_pred EEEecCCCCceEe
Q 003899 352 ELDISGMDGVKSV 364 (788)
Q Consensus 352 ~L~l~~~~~~~~~ 364 (788)
.|+++++......
T Consensus 281 ~L~~s~n~~~~~~ 293 (394)
T COG4886 281 ELDLSGNSLSNAL 293 (394)
T ss_pred EEeccCccccccc
Confidence 8888887654443
No 27
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.85 E-value=6.7e-10 Score=101.16 Aligned_cols=108 Identities=24% Similarity=0.319 Sum_probs=41.2
Q ss_pred HhCCCCCeeEEEccCCcCccccccccc-CCCCCceeeccCCcccccchhhhccccCcEEEccCccchhhchhhh-hcccC
Q 003899 113 MLMNLPRLRVFSLHGYSNIIELPNEIE-NLKHLRFLNLSRTSIQILPESINSLYNLNTILLEDCYQLKKLCNDM-GNLKK 190 (788)
Q Consensus 113 ~~~~l~~Lr~L~L~~~~~l~~lp~~~~-~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i-~~L~~ 190 (788)
.+.+...+|.|+|++| .+..+ +.++ .+.+|+.|+|++|.|+.++ .+..|++|++|++++| .+..++..+ ..+++
T Consensus 14 ~~~n~~~~~~L~L~~n-~I~~I-e~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N-~I~~i~~~l~~~lp~ 89 (175)
T PF14580_consen 14 QYNNPVKLRELNLRGN-QISTI-ENLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNN-RISSISEGLDKNLPN 89 (175)
T ss_dssp ------------------------S--TT-TT--EEE-TTS--S--T-T----TT--EEE--SS----S-CHHHHHH-TT
T ss_pred cccccccccccccccc-ccccc-cchhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCC-CCCccccchHHhCCc
Confidence 3556668899999999 99888 4565 6889999999999999996 4889999999999999 888887666 46999
Q ss_pred CceEecCCCcCcccCCc--cCcCCCCcceeCceEeCC
Q 003899 191 LRHLKSSNVDSLEEMPK--GFGKLTCLLTLGTFVVGK 225 (788)
Q Consensus 191 L~~L~l~~~~~l~~~p~--~i~~l~~L~~L~~~~~~~ 225 (788)
|++|++++|+ +..+.. .++.+++|+.|++.++..
T Consensus 90 L~~L~L~~N~-I~~l~~l~~L~~l~~L~~L~L~~NPv 125 (175)
T PF14580_consen 90 LQELYLSNNK-ISDLNELEPLSSLPKLRVLSLEGNPV 125 (175)
T ss_dssp --EEE-TTS----SCCCCGGGGG-TT--EEE-TT-GG
T ss_pred CCEEECcCCc-CCChHHhHHHHcCCCcceeeccCCcc
Confidence 9999999998 666543 367788888888765544
No 28
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.84 E-value=1.6e-08 Score=103.40 Aligned_cols=162 Identities=26% Similarity=0.457 Sum_probs=103.2
Q ss_pred cCCCCcceEEEecCCCCcccCCCCCCCCcccEEEecccccccccccccC-ccceEeccCCCCCCCCCCCCCCCCccEEEE
Q 003899 582 HNLRHLQKIWISKCPNLESFPEEGLPSAKLTELMIWRCENLKALPNSMS-SLLRLGIIGCPSLESFPEDGFPTNLQSLEV 660 (788)
Q Consensus 582 ~~l~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~-~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l 660 (788)
..+.+++.|++++| .++.+|. -.++|++|.+++|..++.+|..++ +|++|++++|..+..+| ++|+.|++
T Consensus 49 ~~~~~l~~L~Is~c-~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~LP~nLe~L~Ls~Cs~L~sLP-----~sLe~L~L 119 (426)
T PRK15386 49 EEARASGRLYIKDC-DIESLPV---LPNELTEITIENCNNLTTLPGSIPEGLEKLTVCHCPEISGLP-----ESVRSLEI 119 (426)
T ss_pred HHhcCCCEEEeCCC-CCcccCC---CCCCCcEEEccCCCCcccCCchhhhhhhheEccCcccccccc-----cccceEEe
Confidence 34677888888887 6777772 124688888888888877776665 88888888887666443 47888887
Q ss_pred eccCCCCcccccccCCC-CCccEEEEcCCCCC--cccCCC-CCCCCCeEecCCCCCcccchhhcCCCCCCCceecccCCC
Q 003899 661 RDLKITKPLLEWGLNRF-TSLRNLSIGGGYPD--LLSSPP-FPASLTELWISDMPDLECLSSISENLTSLEFLYLIDCPK 736 (788)
Q Consensus 661 ~~~~~~~~~~~~~~~~l-~~L~~L~l~~~~~~--~~~~~~-~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~ 736 (788)
.++... . +..+ ++|+.|.+.+ ++. ...+|. .|++|++|++++|..+ .+|..+. .+|+.|+++.+..
T Consensus 120 ~~n~~~-~-----L~~LPssLk~L~I~~-~n~~~~~~lp~~LPsSLk~L~Is~c~~i-~LP~~LP--~SLk~L~ls~n~~ 189 (426)
T PRK15386 120 KGSATD-S-----IKNVPNGLTSLSINS-YNPENQARIDNLISPSLKTLSLTGCSNI-ILPEKLP--ESLQSITLHIEQK 189 (426)
T ss_pred CCCCCc-c-----cccCcchHhheeccc-cccccccccccccCCcccEEEecCCCcc-cCccccc--ccCcEEEeccccc
Confidence 543221 1 2223 2577777754 221 122333 5678899999888654 3443333 5888888877531
Q ss_pred -CcccCCCCCcCCcceEeecCChhHHHh
Q 003899 737 -LKYFPEQGLPKSLSRLSIHNCPLIEKR 763 (788)
Q Consensus 737 -l~~l~~~~~~~~L~~L~i~~c~~l~~~ 763 (788)
...++...+|+++ .|++.+|.++...
T Consensus 190 ~sLeI~~~sLP~nl-~L~f~n~lkL~~~ 216 (426)
T PRK15386 190 TTWNISFEGFPDGL-DIDLQNSVLLSPD 216 (426)
T ss_pred ccccCccccccccc-EechhhhcccCHH
Confidence 1234445667778 8888888665443
No 29
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.81 E-value=2.3e-10 Score=117.35 Aligned_cols=194 Identities=23% Similarity=0.242 Sum_probs=116.6
Q ss_pred CCCCeeEEEccCCcCcccccccccCCCCCceeeccCCcccccchhhhccccCcEEEccCccchhhchhhhhcccCCceEe
Q 003899 116 NLPRLRVFSLHGYSNIIELPNEIENLKHLRFLNLSRTSIQILPESINSLYNLNTILLEDCYQLKKLCNDMGNLKKLRHLK 195 (788)
Q Consensus 116 ~l~~Lr~L~L~~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~ 195 (788)
.+.--...||+.| .+..+|..+..+..|..|.|+.|.|..+|..++.|..|.+|||+.| .+..+|..++.|+ |+.|-
T Consensus 73 ~ltdt~~aDlsrN-R~~elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~N-qlS~lp~~lC~lp-Lkvli 149 (722)
T KOG0532|consen 73 DLTDTVFADLSRN-RFSELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSN-QLSHLPDGLCDLP-LKVLI 149 (722)
T ss_pred cccchhhhhcccc-ccccCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccc-hhhcCChhhhcCc-ceeEE
Confidence 3444455677777 7777777777777777777777777777777777777777777777 7777777776665 77777
Q ss_pred cCCCcCcccCCccCcCCCCcceeCceEeCCCCCCCcccccccccCCceeEEeccCCCCCchhhhhcccCCCcCCceEEEE
Q 003899 196 SSNVDSLEEMPKGFGKLTCLLTLGTFVVGKDGGSGLRELKSLTHLQGTLQISKLENVKDVGDACEAQLNSKENLQALLLK 275 (788)
Q Consensus 196 l~~~~~l~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~ 275 (788)
+++|+ +..+|.+++.+..|.+|+...+.... ....+..+. .|+.|.+.
T Consensus 150 ~sNNk-l~~lp~~ig~~~tl~~ld~s~nei~s--lpsql~~l~-----------------------------slr~l~vr 197 (722)
T KOG0532|consen 150 VSNNK-LTSLPEEIGLLPTLAHLDVSKNEIQS--LPSQLGYLT-----------------------------SLRDLNVR 197 (722)
T ss_pred EecCc-cccCCcccccchhHHHhhhhhhhhhh--chHHhhhHH-----------------------------HHHHHHHh
Confidence 77777 77777777766677777665443221 111111222 12222221
Q ss_pred eecCcccCccchhhhhhhcccCccccccceEEEEeeCCCCCCcccCCCCCCCeeEEEECCCCCCCCCC----CCCCCCcc
Q 003899 276 WSTRDVQNLDQCEFETHVLSVLKPHQDVQELTITGYGGTKFPIWLGDSSFSKLARLELCRCTSTSLPS----VGQLPFLM 351 (788)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~L~~~~~~~l~~----l~~l~~L~ 351 (788)
.+.. ...++.+. .-.|.+|++++|....+|-.+. .+..|+.|.|.+|.+..-|. -|...-.+
T Consensus 198 Rn~l-----------~~lp~El~-~LpLi~lDfScNkis~iPv~fr--~m~~Lq~l~LenNPLqSPPAqIC~kGkVHIFK 263 (722)
T KOG0532|consen 198 RNHL-----------EDLPEELC-SLPLIRLDFSCNKISYLPVDFR--KMRHLQVLQLENNPLQSPPAQICEKGKVHIFK 263 (722)
T ss_pred hhhh-----------hhCCHHHh-CCceeeeecccCceeecchhhh--hhhhheeeeeccCCCCCChHHHHhccceeeee
Confidence 1111 11122222 1246677777777777776665 67777777777777655443 23344456
Q ss_pred EEEecCC
Q 003899 352 ELDISGM 358 (788)
Q Consensus 352 ~L~l~~~ 358 (788)
+|+..-|
T Consensus 264 yL~~qA~ 270 (722)
T KOG0532|consen 264 YLSTQAC 270 (722)
T ss_pred eecchhc
Confidence 6666555
No 30
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.79 E-value=1.7e-10 Score=114.11 Aligned_cols=68 Identities=18% Similarity=0.184 Sum_probs=34.8
Q ss_pred CCCccEEeccccccceeeccc-cccCCCCccEEEEecCcccchhhhcccccccCCCCCCeEEcccCCCccc
Q 003899 472 LSSLKSVHLAYVANEVVLAGL-FEQGLPKLENLVIVEVREQAYLWQSETRLLQDIRSLNRLHISRCPRLLS 541 (788)
Q Consensus 472 ~~~L~~L~l~~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~ 541 (788)
.+++++|.+.+|..++..... ....++.|+++++..|...+...- ......+++|++|.++.|+.+..
T Consensus 163 CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~L--k~la~gC~kL~~lNlSwc~qi~~ 231 (483)
T KOG4341|consen 163 CPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSL--KYLAEGCRKLKYLNLSWCPQISG 231 (483)
T ss_pred CCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHH--HHHHHhhhhHHHhhhccCchhhc
Confidence 555566666666555442221 224456666666666655443210 12334566666666666665543
No 31
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.75 E-value=3.2e-10 Score=116.41 Aligned_cols=183 Identities=22% Similarity=0.273 Sum_probs=141.9
Q ss_pred hhHHHHhCCCCCeeEEEccCCcCcccccccccCCCCCceeeccCCcccccchhhhccccCcEEEccCccchhhchhhhhc
Q 003899 108 WSVLQMLMNLPRLRVFSLHGYSNIIELPNEIENLKHLRFLNLSRTSIQILPESINSLYNLNTILLEDCYQLKKLCNDMGN 187 (788)
Q Consensus 108 ~~~~~~~~~l~~Lr~L~L~~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~ 187 (788)
..+|..+..+..|..+.|..| .+..+|..++++..|.||||+.|++..+|..++.| -|++|-+++| +++.+|.+++.
T Consensus 88 ~elp~~~~~f~~Le~liLy~n-~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~l-pLkvli~sNN-kl~~lp~~ig~ 164 (722)
T KOG0532|consen 88 SELPEEACAFVSLESLILYHN-CIRTIPEAICNLEALTFLDLSSNQLSHLPDGLCDL-PLKVLIVSNN-KLTSLPEEIGL 164 (722)
T ss_pred ccCchHHHHHHHHHHHHHHhc-cceecchhhhhhhHHHHhhhccchhhcCChhhhcC-cceeEEEecC-ccccCCccccc
Confidence 455666777778888999999 99999999999999999999999999999999888 4899999998 99999999999
Q ss_pred ccCCceEecCCCcCcccCCccCcCCCCcceeCceEeCCCCCCCcccccccccCCceeEEeccCCCCCchhhhhcccCCCc
Q 003899 188 LKKLRHLKSSNVDSLEEMPKGFGKLTCLLTLGTFVVGKDGGSGLRELKSLTHLQGTLQISKLENVKDVGDACEAQLNSKE 267 (788)
Q Consensus 188 L~~L~~L~l~~~~~l~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~~~~~~~~~~~~~~~~~~l~~~~ 267 (788)
+..|.+||.+.|. +..+|..++.+.+|+.|.+..+.... ...+ +.. -
T Consensus 165 ~~tl~~ld~s~ne-i~slpsql~~l~slr~l~vrRn~l~~--lp~E-----------------------------l~~-L 211 (722)
T KOG0532|consen 165 LPTLAHLDVSKNE-IQSLPSQLGYLTSLRDLNVRRNHLED--LPEE-----------------------------LCS-L 211 (722)
T ss_pred chhHHHhhhhhhh-hhhchHHhhhHHHHHHHHHhhhhhhh--CCHH-----------------------------HhC-C
Confidence 9999999999999 99999999999999998875443210 0011 111 2
Q ss_pred CCceEEEEeecCcccCccchhhhhhhcccCccccccceEEEEeeCCCCCCcccCC-CCCCCeeEEEECCCC
Q 003899 268 NLQALLLKWSTRDVQNLDQCEFETHVLSVLKPHQDVQELTITGYGGTKFPIWLGD-SSFSKLARLELCRCT 337 (788)
Q Consensus 268 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~-~~~~~L~~L~L~~~~ 337 (788)
.|..|++++|.+ ..++-.+..+++|+.|.|.+|....-|..+.. ....--++|+..-|.
T Consensus 212 pLi~lDfScNki-----------s~iPv~fr~m~~Lq~l~LenNPLqSPPAqIC~kGkVHIFKyL~~qA~q 271 (722)
T KOG0532|consen 212 PLIRLDFSCNKI-----------SYLPVDFRKMRHLQVLQLENNPLQSPPAQICEKGKVHIFKYLSTQACQ 271 (722)
T ss_pred ceeeeecccCce-----------eecchhhhhhhhheeeeeccCCCCCChHHHHhccceeeeeeecchhcc
Confidence 566778877765 34566788889999999999987766655531 112234566676663
No 32
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.73 E-value=2.1e-10 Score=113.43 Aligned_cols=83 Identities=19% Similarity=0.290 Sum_probs=38.2
Q ss_pred CCCcceEEEecCCCCcc--cCCCCCCCCcccEEEeccccccccc--------ccccCccceEeccCCCCCCCCCC--CCC
Q 003899 584 LRHLQKIWISKCPNLES--FPEEGLPSAKLTELMIWRCENLKAL--------PNSMSSLLRLGIIGCPSLESFPE--DGF 651 (788)
Q Consensus 584 l~~L~~L~l~~c~~l~~--~~~~~~~~~~L~~L~l~~c~~l~~l--------~~~~~~L~~L~l~~c~~l~~~~~--~~~ 651 (788)
++.|+.+++.+|..... +......++.|+++.+++|..++.- ..+...|+.+.+++||.++..-. ...
T Consensus 345 ~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~ 424 (483)
T KOG4341|consen 345 CPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSI 424 (483)
T ss_pred ChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhh
Confidence 55666666666543321 2233333556666666655544322 11222455555555554433211 122
Q ss_pred CCCccEEEEeccCCC
Q 003899 652 PTNLQSLEVRDLKIT 666 (788)
Q Consensus 652 ~~~L~~L~l~~~~~~ 666 (788)
+++|+.+++.+|..+
T Consensus 425 c~~Leri~l~~~q~v 439 (483)
T KOG4341|consen 425 CRNLERIELIDCQDV 439 (483)
T ss_pred Ccccceeeeechhhh
Confidence 345555555555444
No 33
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.64 E-value=8.8e-09 Score=97.39 Aligned_cols=127 Identities=22% Similarity=0.229 Sum_probs=98.5
Q ss_pred CCceeEEEeccCCccccchhhhhHHHHhCCCCCeeEEEccCCcCcccccccccCCCCCceeeccCCcccccchhhhcccc
Q 003899 87 VEHLRTFLPVNLSNYRINYLAWSVLQMLMNLPRLRVFSLHGYSNIIELPNEIENLKHLRFLNLSRTSIQILPESINSLYN 166 (788)
Q Consensus 87 ~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~ 166 (788)
...|..+.+..+. ...+..+..-.+.+|+|+++.| .+..+ ..+..+.+|+.|||++|.++++-..-.+|-|
T Consensus 283 Wq~LtelDLS~N~-------I~~iDESvKL~Pkir~L~lS~N-~i~~v-~nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGN 353 (490)
T KOG1259|consen 283 WQELTELDLSGNL-------ITQIDESVKLAPKLRRLILSQN-RIRTV-QNLAELPQLQLLDLSGNLLAECVGWHLKLGN 353 (490)
T ss_pred Hhhhhhccccccc-------hhhhhhhhhhccceeEEecccc-ceeee-hhhhhcccceEeecccchhHhhhhhHhhhcC
Confidence 3445555555542 2334447777888999999999 88777 4588889999999999988888777788889
Q ss_pred CcEEEccCccchhhchhhhhcccCCceEecCCCcCcccCC--ccCcCCCCcceeCceEeCC
Q 003899 167 LNTILLEDCYQLKKLCNDMGNLKKLRHLKSSNVDSLEEMP--KGFGKLTCLLTLGTFVVGK 225 (788)
Q Consensus 167 L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p--~~i~~l~~L~~L~~~~~~~ 225 (788)
.++|.|++| .++.+. ++++|.+|..||+++|+ +..+. .+||+++.|+++.+.++..
T Consensus 354 IKtL~La~N-~iE~LS-GL~KLYSLvnLDl~~N~-Ie~ldeV~~IG~LPCLE~l~L~~NPl 411 (490)
T KOG1259|consen 354 IKTLKLAQN-KIETLS-GLRKLYSLVNLDLSSNQ-IEELDEVNHIGNLPCLETLRLTGNPL 411 (490)
T ss_pred Eeeeehhhh-hHhhhh-hhHhhhhheeccccccc-hhhHHHhcccccccHHHHHhhcCCCc
Confidence 999999998 777775 58999999999999998 77665 4589999999988866543
No 34
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.64 E-value=3e-08 Score=73.97 Aligned_cols=57 Identities=28% Similarity=0.529 Sum_probs=42.1
Q ss_pred CCeeEEEccCCcCccccc-ccccCCCCCceeeccCCcccccc-hhhhccccCcEEEccCc
Q 003899 118 PRLRVFSLHGYSNIIELP-NEIENLKHLRFLNLSRTSIQILP-ESINSLYNLNTILLEDC 175 (788)
Q Consensus 118 ~~Lr~L~L~~~~~l~~lp-~~~~~l~~L~~L~L~~~~i~~lp-~~i~~L~~L~~L~L~~~ 175 (788)
++|++|++++| .+..+| ..|.++++|++|++++|.++.+| ..|..+++|++|++++|
T Consensus 1 p~L~~L~l~~n-~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 1 PNLESLDLSNN-KLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TTESEEEETSS-TESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred CcCcEEECCCC-CCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence 46777777777 777776 56677777777777777777774 56677777777777776
No 35
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.62 E-value=1.3e-07 Score=96.86 Aligned_cols=135 Identities=27% Similarity=0.400 Sum_probs=101.2
Q ss_pred CCcccEEEecccccccccccccCccceEeccCCCCCCCCCCCCCCCCccEEEEeccCCCCcccccccCCCCCccEEEEcC
Q 003899 608 SAKLTELMIWRCENLKALPNSMSSLLRLGIIGCPSLESFPEDGFPTNLQSLEVRDLKITKPLLEWGLNRFTSLRNLSIGG 687 (788)
Q Consensus 608 ~~~L~~L~l~~c~~l~~l~~~~~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~ 687 (788)
+.+++.|++++| .++.+|.-..+|++|.+++|..++.+|. .++++|+.|++++|..+..++ ++|+.|++.+
T Consensus 51 ~~~l~~L~Is~c-~L~sLP~LP~sLtsL~Lsnc~nLtsLP~-~LP~nLe~L~Ls~Cs~L~sLP-------~sLe~L~L~~ 121 (426)
T PRK15386 51 ARASGRLYIKDC-DIESLPVLPNELTEITIENCNNLTTLPG-SIPEGLEKLTVCHCPEISGLP-------ESVRSLEIKG 121 (426)
T ss_pred hcCCCEEEeCCC-CCcccCCCCCCCcEEEccCCCCcccCCc-hhhhhhhheEccCcccccccc-------cccceEEeCC
Confidence 578999999999 7888884334899999999999988875 467899999999997776554 3588888865
Q ss_pred CCCCcccCCCCCCCCCeEecCCCCCc--ccchhhcCCCCCCCceecccCCCCcccCCCCCcCCcceEeecCC
Q 003899 688 GYPDLLSSPPFPASLTELWISDMPDL--ECLSSISENLTSLEFLYLIDCPKLKYFPEQGLPKSLSRLSIHNC 757 (788)
Q Consensus 688 ~~~~~~~~~~~~~~L~~L~l~~~~~l--~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~i~~c 757 (788)
+....++..|++|++|.+.+++.. ..+|. .--++|++|++.+|..+. +| .++|.+|+.|+++.+
T Consensus 122 --n~~~~L~~LPssLk~L~I~~~n~~~~~~lp~--~LPsSLk~L~Is~c~~i~-LP-~~LP~SLk~L~ls~n 187 (426)
T PRK15386 122 --SATDSIKNVPNGLTSLSINSYNPENQARIDN--LISPSLKTLSLTGCSNII-LP-EKLPESLQSITLHIE 187 (426)
T ss_pred --CCCcccccCcchHhheecccccccccccccc--ccCCcccEEEecCCCccc-Cc-ccccccCcEEEeccc
Confidence 554556666678999998764322 11221 111689999999997553 44 358899999999875
No 36
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.62 E-value=1.2e-08 Score=101.96 Aligned_cols=209 Identities=21% Similarity=0.198 Sum_probs=117.4
Q ss_pred cCCCCCceeeccCCcccccc--hhhhccccCcEEEccCccchh---hchhhhhcccCCceEecCCCcCcccCCccCcCCC
Q 003899 139 ENLKHLRFLNLSRTSIQILP--ESINSLYNLNTILLEDCYQLK---KLCNDMGNLKKLRHLKSSNVDSLEEMPKGFGKLT 213 (788)
Q Consensus 139 ~~l~~L~~L~L~~~~i~~lp--~~i~~L~~L~~L~L~~~~~l~---~lp~~i~~L~~L~~L~l~~~~~l~~~p~~i~~l~ 213 (788)
.++.+||...|.++.+...+ .....|++++.|||++| .+. .+-.-...|++|+.|+++.|+ +...-...
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~N-L~~nw~~v~~i~eqLp~Le~LNls~Nr-l~~~~~s~---- 191 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRN-LFHNWFPVLKIAEQLPSLENLNLSSNR-LSNFISSN---- 191 (505)
T ss_pred hhHHhhhheeecCccccccchhhhhhhCCcceeecchhh-hHHhHHHHHHHHHhcccchhccccccc-ccCCcccc----
Confidence 57778888888888877766 35677888999999888 433 333335678888888888887 32211110
Q ss_pred CcceeCceEeCCCCCCCcccccccccCCceeEEeccCCCCCchhhhhcccCCCcCCceEEEEeecCcccCccchhhhhhh
Q 003899 214 CLLTLGTFVVGKDGGSGLRELKSLTHLQGTLQISKLENVKDVGDACEAQLNSKENLQALLLKWSTRDVQNLDQCEFETHV 293 (788)
Q Consensus 214 ~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 293 (788)
.+. .+++|+.|.++.|+.. ...+
T Consensus 192 --~~~----------------------------------------------~l~~lK~L~l~~CGls---------~k~V 214 (505)
T KOG3207|consen 192 --TTL----------------------------------------------LLSHLKQLVLNSCGLS---------WKDV 214 (505)
T ss_pred --chh----------------------------------------------hhhhhheEEeccCCCC---------HHHH
Confidence 000 1134555555544441 2223
Q ss_pred cccCccccccceEEEEeeCCCCCCcccCCCCCCCeeEEEECCCCCC---CCCCCCCCCCccEEEecCCCCceEeCccccc
Q 003899 294 LSVLKPHQDVQELTITGYGGTKFPIWLGDSSFSKLARLELCRCTST---SLPSVGQLPFLMELDISGMDGVKSVGSEFYR 370 (788)
Q Consensus 294 ~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~L~~~~~~---~l~~l~~l~~L~~L~l~~~~~~~~~~~~~~~ 370 (788)
...+..+|+|+.|++.+|.... -.......+..|+.|+|++|.+. .++..+.+|.|+.|.++.|. +..+...-.+
T Consensus 215 ~~~~~~fPsl~~L~L~~N~~~~-~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tg-i~si~~~d~~ 292 (505)
T KOG3207|consen 215 QWILLTFPSLEVLYLEANEIIL-IKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTG-IASIAEPDVE 292 (505)
T ss_pred HHHHHhCCcHHHhhhhcccccc-eecchhhhhhHHhhccccCCcccccccccccccccchhhhhccccC-cchhcCCCcc
Confidence 3334456777777777764211 11111124677888888888773 34457888888888888774 3333211110
Q ss_pred -CCCCCCCCCcceEecccccccccccccCCCCcccccCCcccEEeeec
Q 003899 371 -RSCSVPFPSLETLSFSDMREWEEWIPCGAGQEVDEVFPKLRKLSLFN 417 (788)
Q Consensus 371 -~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 417 (788)
......||+|++|.+.. +++.+|.... ....+++|+.|.+..
T Consensus 293 s~~kt~~f~kL~~L~i~~-N~I~~w~sl~----~l~~l~nlk~l~~~~ 335 (505)
T KOG3207|consen 293 SLDKTHTFPKLEYLNISE-NNIRDWRSLN----HLRTLENLKHLRITL 335 (505)
T ss_pred chhhhcccccceeeeccc-Cccccccccc----hhhccchhhhhhccc
Confidence 01123367777777765 3444454310 223345555555443
No 37
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.53 E-value=6.8e-09 Score=103.56 Aligned_cols=175 Identities=19% Similarity=0.198 Sum_probs=73.7
Q ss_pred CCCCeeEEEECCCCC-CCCC---CCCCCCCccEEEecCCCCceEeCcccccCCCCCCCCCcceEeccccc-ccccccccC
Q 003899 324 SFSKLARLELCRCTS-TSLP---SVGQLPFLMELDISGMDGVKSVGSEFYRRSCSVPFPSLETLSFSDMR-EWEEWIPCG 398 (788)
Q Consensus 324 ~~~~L~~L~L~~~~~-~~l~---~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~l~~~~~~~ 398 (788)
.+++++.|+++.|-+ ...+ ....+|+|+.|.++.|........... ..++.|+.|.++.|. .+.++..
T Consensus 144 ~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~-----~~l~~lK~L~l~~CGls~k~V~~-- 216 (505)
T KOG3207|consen 144 ILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTT-----LLLSHLKQLVLNSCGLSWKDVQW-- 216 (505)
T ss_pred hCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccch-----hhhhhhheEEeccCCCCHHHHHH--
Confidence 455555555555544 2222 144555555555555543222211111 125555555555542 1222211
Q ss_pred CCCcccccCCcccEEeeecCccc-ccCCC-CCCCCccEEEEeccCCcc----cccCCCCCccEEEeccCCcceec--C--
Q 003899 399 AGQEVDEVFPKLRKLSLFNCHKL-QGKLP-KRLLLLETLVIKSCQQLL----VTIQCLPALSELQIDGCERVVFS--S-- 468 (788)
Q Consensus 399 ~~~~~~~~~~~L~~L~l~~c~~l-~~~lp-~~l~~L~~L~l~~c~~l~----~~~~~~~~L~~L~l~~~~~~~~~--~-- 468 (788)
....||+|+.|.+..|..+ ....+ ..+..|++|++++++.+. .....++.|+.|+++.|....+. .
T Consensus 217 ----~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~ 292 (505)
T KOG3207|consen 217 ----ILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVE 292 (505)
T ss_pred ----HHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhccccCcchhcCCCcc
Confidence 2234555555555554211 10111 223445555555544332 12233555555555555422211 1
Q ss_pred ----CcCCCCccEEecccccc--ceeeccccccCCCCccEEEEecCccc
Q 003899 469 ----PIDLSSLKSVHLAYVAN--EVVLAGLFEQGLPKLENLVIVEVREQ 511 (788)
Q Consensus 469 ----~~~~~~L~~L~l~~~~~--~~~~~~~~~~~l~~L~~L~l~~~~~~ 511 (788)
...+++|+.|++..|+. ...+.. ...+++|+.|.+..+...
T Consensus 293 s~~kt~~f~kL~~L~i~~N~I~~w~sl~~--l~~l~nlk~l~~~~n~ln 339 (505)
T KOG3207|consen 293 SLDKTHTFPKLEYLNISENNIRDWRSLNH--LRTLENLKHLRITLNYLN 339 (505)
T ss_pred chhhhcccccceeeecccCccccccccch--hhccchhhhhhccccccc
Confidence 12355666666655443 111111 134455555555555443
No 38
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.50 E-value=7.9e-08 Score=103.45 Aligned_cols=126 Identities=25% Similarity=0.307 Sum_probs=106.3
Q ss_pred cCCCceeEEEeccCCccccchhhhhHHHHhCCCC-CeeEEEccCCcCcccccccccCCCCCceeeccCCcccccchhhhc
Q 003899 85 CDVEHLRTFLPVNLSNYRINYLAWSVLQMLMNLP-RLRVFSLHGYSNIIELPNEIENLKHLRFLNLSRTSIQILPESINS 163 (788)
Q Consensus 85 ~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~l~-~Lr~L~L~~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~ 163 (788)
...+.+..|.+.++.- .+++.....++ +|+.|++++| .+..+|..++.+++|+.|++++|++.++|...+.
T Consensus 113 ~~~~~l~~L~l~~n~i-------~~i~~~~~~~~~nL~~L~l~~N-~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~ 184 (394)
T COG4886 113 LELTNLTSLDLDNNNI-------TDIPPLIGLLKSNLKELDLSDN-KIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSN 184 (394)
T ss_pred hcccceeEEecCCccc-------ccCccccccchhhccccccccc-chhhhhhhhhccccccccccCCchhhhhhhhhhh
Confidence 3446677777776642 45555566664 9999999999 9999988899999999999999999999998889
Q ss_pred cccCcEEEccCccchhhchhhhhcccCCceEecCCCcCcccCCccCcCCCCcceeCc
Q 003899 164 LYNLNTILLEDCYQLKKLCNDMGNLKKLRHLKSSNVDSLEEMPKGFGKLTCLLTLGT 220 (788)
Q Consensus 164 L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~i~~l~~L~~L~~ 220 (788)
+.+|+.|++++| .+..+|..+..+.+|++|.+++|. ....+..+.+++++..|.+
T Consensus 185 ~~~L~~L~ls~N-~i~~l~~~~~~~~~L~~l~~~~N~-~~~~~~~~~~~~~l~~l~l 239 (394)
T COG4886 185 LSNLNNLDLSGN-KISDLPPEIELLSALEELDLSNNS-IIELLSSLSNLKNLSGLEL 239 (394)
T ss_pred hhhhhheeccCC-ccccCchhhhhhhhhhhhhhcCCc-ceecchhhhhccccccccc
Confidence 999999999999 999999988888899999999997 6677777777777777664
No 39
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.46 E-value=1.3e-07 Score=70.59 Aligned_cols=58 Identities=34% Similarity=0.475 Sum_probs=51.9
Q ss_pred CCCceeeccCCcccccc-hhhhccccCcEEEccCccchhhchhh-hhcccCCceEecCCCc
Q 003899 142 KHLRFLNLSRTSIQILP-ESINSLYNLNTILLEDCYQLKKLCND-MGNLKKLRHLKSSNVD 200 (788)
Q Consensus 142 ~~L~~L~L~~~~i~~lp-~~i~~L~~L~~L~L~~~~~l~~lp~~-i~~L~~L~~L~l~~~~ 200 (788)
++|++|++++|+|+.+| ..|..+++|++|++++| .+..+|.+ |..+++|++|++++|+
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N-~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNN-NLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSS-SESEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCC-ccCccCHHHHcCCCCCCEEeCcCCc
Confidence 47899999999999997 57889999999999999 78888764 8999999999999986
No 40
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.43 E-value=3.8e-08 Score=93.22 Aligned_cols=120 Identities=22% Similarity=0.249 Sum_probs=92.3
Q ss_pred CCCCeeEEEccCCcCcccccccccCCCCCceeeccCCcccccchhhhccccCcEEEccCccchhhchhhhhcccCCceEe
Q 003899 116 NLPRLRVFSLHGYSNIIELPNEIENLKHLRFLNLSRTSIQILPESINSLYNLNTILLEDCYQLKKLCNDMGNLKKLRHLK 195 (788)
Q Consensus 116 ~l~~Lr~L~L~~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~ 195 (788)
-.+.|..|||++| .|..+.++..-++.+|+|++++|.|..+-. +..|++|+.|||++| .+..+-..-.+|-|.+.|.
T Consensus 282 TWq~LtelDLS~N-~I~~iDESvKL~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~N-~Ls~~~Gwh~KLGNIKtL~ 358 (490)
T KOG1259|consen 282 TWQELTELDLSGN-LITQIDESVKLAPKLRRLILSQNRIRTVQN-LAELPQLQLLDLSGN-LLAECVGWHLKLGNIKTLK 358 (490)
T ss_pred hHhhhhhcccccc-chhhhhhhhhhccceeEEeccccceeeehh-hhhcccceEeecccc-hhHhhhhhHhhhcCEeeee
Confidence 3456788999999 888888888888899999999999888855 888999999999998 7777655457888899999
Q ss_pred cCCCcCcccCCccCcCCCCcceeCceEeCCCCC---CCcccccccccC
Q 003899 196 SSNVDSLEEMPKGFGKLTCLLTLGTFVVGKDGG---SGLRELKSLTHL 240 (788)
Q Consensus 196 l~~~~~l~~~p~~i~~l~~L~~L~~~~~~~~~~---~~~~~l~~L~~L 240 (788)
+++|. +..+ .+++++-+|..|++.++.+..- ..++.|+.|..+
T Consensus 359 La~N~-iE~L-SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l 404 (490)
T KOG1259|consen 359 LAQNK-IETL-SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETL 404 (490)
T ss_pred hhhhh-Hhhh-hhhHhhhhheeccccccchhhHHHhcccccccHHHHH
Confidence 99887 5544 4678888888898888776653 344444444443
No 41
>PLN03150 hypothetical protein; Provisional
Probab=98.42 E-value=3.6e-07 Score=102.87 Aligned_cols=101 Identities=24% Similarity=0.321 Sum_probs=79.8
Q ss_pred CeeEEEccCCcCcc-cccccccCCCCCceeeccCCccc-ccchhhhccccCcEEEccCccchhhchhhhhcccCCceEec
Q 003899 119 RLRVFSLHGYSNII-ELPNEIENLKHLRFLNLSRTSIQ-ILPESINSLYNLNTILLEDCYQLKKLCNDMGNLKKLRHLKS 196 (788)
Q Consensus 119 ~Lr~L~L~~~~~l~-~lp~~~~~l~~L~~L~L~~~~i~-~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l 196 (788)
.++.|+|++| .+. .+|..|+++++|++|+|++|.+. .+|..++.+++|++|+|++|.....+|..++++++|++|++
T Consensus 419 ~v~~L~L~~n-~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~L 497 (623)
T PLN03150 419 FIDGLGLDNQ-GLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNL 497 (623)
T ss_pred EEEEEECCCC-CccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEEC
Confidence 3778888888 554 67888889999999999999887 77888899999999999988555578888899999999999
Q ss_pred CCCcCcccCCccCcCC-CCcceeCc
Q 003899 197 SNVDSLEEMPKGFGKL-TCLLTLGT 220 (788)
Q Consensus 197 ~~~~~l~~~p~~i~~l-~~L~~L~~ 220 (788)
++|.....+|..++.+ .++..+++
T Consensus 498 s~N~l~g~iP~~l~~~~~~~~~l~~ 522 (623)
T PLN03150 498 NGNSLSGRVPAALGGRLLHRASFNF 522 (623)
T ss_pred cCCcccccCChHHhhccccCceEEe
Confidence 9888666788776653 34445544
No 42
>PLN03150 hypothetical protein; Provisional
Probab=98.42 E-value=4.8e-07 Score=101.92 Aligned_cols=110 Identities=20% Similarity=0.267 Sum_probs=91.3
Q ss_pred eeEEEeccCCccccchhhhhHHHHhCCCCCeeEEEccCCcCcc-cccccccCCCCCceeeccCCccc-ccchhhhccccC
Q 003899 90 LRTFLPVNLSNYRINYLAWSVLQMLMNLPRLRVFSLHGYSNII-ELPNEIENLKHLRFLNLSRTSIQ-ILPESINSLYNL 167 (788)
Q Consensus 90 Lr~L~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~l~-~lp~~~~~l~~L~~L~L~~~~i~-~lp~~i~~L~~L 167 (788)
++.|.+.++. +.+.+|..+..+++|+.|+|++| .+. .+|..++.+.+|++|+|++|.+. .+|..+++|++|
T Consensus 420 v~~L~L~~n~------L~g~ip~~i~~L~~L~~L~Ls~N-~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L 492 (623)
T PLN03150 420 IDGLGLDNQG------LRGFIPNDISKLRHLQSINLSGN-SIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSL 492 (623)
T ss_pred EEEEECCCCC------ccccCCHHHhCCCCCCEEECCCC-cccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCC
Confidence 5555555532 55677888999999999999999 664 78989999999999999999998 789999999999
Q ss_pred cEEEccCccchhhchhhhhcc-cCCceEecCCCcCcccCC
Q 003899 168 NTILLEDCYQLKKLCNDMGNL-KKLRHLKSSNVDSLEEMP 206 (788)
Q Consensus 168 ~~L~L~~~~~l~~lp~~i~~L-~~L~~L~l~~~~~l~~~p 206 (788)
++|+|++|.....+|..++.+ .++..+++.+|..+...|
T Consensus 493 ~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p 532 (623)
T PLN03150 493 RILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIP 532 (623)
T ss_pred CEEECcCCcccccCChHHhhccccCceEEecCCccccCCC
Confidence 999999996667999988764 578899999987554443
No 43
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.32 E-value=9.2e-08 Score=102.88 Aligned_cols=107 Identities=22% Similarity=0.270 Sum_probs=82.7
Q ss_pred HhCCCCCeeEEEccCCcCcccccccccCCCCCceeeccCCcccccchhhhccccCcEEEccCccchhhchhhhhcccCCc
Q 003899 113 MLMNLPRLRVFSLHGYSNIIELPNEIENLKHLRFLNLSRTSIQILPESINSLYNLNTILLEDCYQLKKLCNDMGNLKKLR 192 (788)
Q Consensus 113 ~~~~l~~Lr~L~L~~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~ 192 (788)
.+..+++|..|++.+| .+..+...+..+.+|++|++++|.|+.+.. +..+..|+.|++++| .+..++. +..+++|+
T Consensus 90 ~l~~~~~l~~l~l~~n-~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~-l~~l~~L~~L~l~~N-~i~~~~~-~~~l~~L~ 165 (414)
T KOG0531|consen 90 HLSKLKSLEALDLYDN-KIEKIENLLSSLVNLQVLDLSFNKITKLEG-LSTLTLLKELNLSGN-LISDISG-LESLKSLK 165 (414)
T ss_pred ccccccceeeeecccc-chhhcccchhhhhcchheeccccccccccc-hhhccchhhheeccC-cchhccC-Cccchhhh
Confidence 4778888888888888 888875547888889999999888888854 777888888888888 7777764 77788888
Q ss_pred eEecCCCcCcccCCcc-CcCCCCcceeCceEeC
Q 003899 193 HLKSSNVDSLEEMPKG-FGKLTCLLTLGTFVVG 224 (788)
Q Consensus 193 ~L~l~~~~~l~~~p~~-i~~l~~L~~L~~~~~~ 224 (788)
.+++++|. +..+... ...+.+++.+++..+.
T Consensus 166 ~l~l~~n~-i~~ie~~~~~~~~~l~~l~l~~n~ 197 (414)
T KOG0531|consen 166 LLDLSYNR-IVDIENDELSELISLEELDLGGNS 197 (414)
T ss_pred cccCCcch-hhhhhhhhhhhccchHHHhccCCc
Confidence 88888888 6666553 4667777777764443
No 44
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.25 E-value=1.9e-08 Score=95.16 Aligned_cols=158 Identities=17% Similarity=0.216 Sum_probs=90.8
Q ss_pred cCcEEEccCccchh--hchhhhhcccCCceEecCCCcCcccCCccCcCCCCcceeCceEeCCCCCCCcccccccccCCce
Q 003899 166 NLNTILLEDCYQLK--KLCNDMGNLKKLRHLKSSNVDSLEEMPKGFGKLTCLLTLGTFVVGKDGGSGLRELKSLTHLQGT 243 (788)
Q Consensus 166 ~L~~L~L~~~~~l~--~lp~~i~~L~~L~~L~l~~~~~l~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~ 243 (788)
.||+|||+.. .++ .+-.-+..+.+|+.|.+.++..-+.+-..|.+-.+|+.|++..+..-+
T Consensus 186 Rlq~lDLS~s-~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t---------------- 248 (419)
T KOG2120|consen 186 RLQHLDLSNS-VITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFT---------------- 248 (419)
T ss_pred hhHHhhcchh-heeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccc----------------
Confidence 4888888876 432 222235677788888888887444455567777778877764432111
Q ss_pred eEEeccCCCCCchhhhhcccCCCcCCceEEEEeecCcccCccchhhhhhhcccCc-cccccceEEEEeeCCCCCCcccC-
Q 003899 244 LQISKLENVKDVGDACEAQLNSKENLQALLLKWSTRDVQNLDQCEFETHVLSVLK-PHQDVQELTITGYGGTKFPIWLG- 321 (788)
Q Consensus 244 l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~-~~~~L~~L~l~~~~~~~~p~~~~- 321 (788)
..+...-+..++.|.+|.++|+..... .+..... --++|+.|+++|+.-.-.-..+.
T Consensus 249 ------------~n~~~ll~~scs~L~~LNlsWc~l~~~---------~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~t 307 (419)
T KOG2120|consen 249 ------------ENALQLLLSSCSRLDELNLSWCFLFTE---------KVTVAVAHISETLTQLNLSGYRRNLQKSHLST 307 (419)
T ss_pred ------------hhHHHHHHHhhhhHhhcCchHhhccch---------hhhHHHhhhchhhhhhhhhhhHhhhhhhHHHH
Confidence 111122255667888888999876110 0111111 12578888888865321111111
Q ss_pred -CCCCCCeeEEEECCCCC---CCCCCCCCCCCccEEEecCCCCc
Q 003899 322 -DSSFSKLARLELCRCTS---TSLPSVGQLPFLMELDISGMDGV 361 (788)
Q Consensus 322 -~~~~~~L~~L~L~~~~~---~~l~~l~~l~~L~~L~l~~~~~~ 361 (788)
...++++..|++++|.. +.+..+-+++.|++|.++.|..+
T Consensus 308 L~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i 351 (419)
T KOG2120|consen 308 LVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDI 351 (419)
T ss_pred HHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcCC
Confidence 02467777777777765 22334667777777777777644
No 45
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.23 E-value=2e-08 Score=95.13 Aligned_cols=104 Identities=20% Similarity=0.180 Sum_probs=62.9
Q ss_pred CCccEEEEeccCCCCcccccccCC-CCCccEEEEcCCCCC------cccCCCCCCCCCeEecCCCCCcccc-hhhcCCCC
Q 003899 653 TNLQSLEVRDLKITKPLLEWGLNR-FTSLRNLSIGGGYPD------LLSSPPFPASLTELWISDMPDLECL-SSISENLT 724 (788)
Q Consensus 653 ~~L~~L~l~~~~~~~~~~~~~~~~-l~~L~~L~l~~~~~~------~~~~~~~~~~L~~L~l~~~~~l~~l-~~~~~~l~ 724 (788)
+.|.+|+++-|...+......+.. =++|..|+++| |.+ +..+...+++|.+|||++|..++.- ...+..|+
T Consensus 260 s~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG-~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~ 338 (419)
T KOG2120|consen 260 SRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSG-YRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFN 338 (419)
T ss_pred hhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhh-hHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcc
Confidence 344555555554442222112222 13455555555 333 2222227789999999999888753 34488899
Q ss_pred CCCceecccCCCCc--ccCCCCCcCCcceEeecCC
Q 003899 725 SLEFLYLIDCPKLK--YFPEQGLPKSLSRLSIHNC 757 (788)
Q Consensus 725 ~L~~L~l~~c~~l~--~l~~~~~~~~L~~L~i~~c 757 (788)
.|++|.++.|-.+- .+-+.+..|+|.+|++.||
T Consensus 339 ~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 339 YLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred hheeeehhhhcCCChHHeeeeccCcceEEEEeccc
Confidence 99999999996441 1111233589999999998
No 46
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.19 E-value=1.5e-06 Score=58.94 Aligned_cols=38 Identities=32% Similarity=0.472 Sum_probs=19.9
Q ss_pred CCceeeccCCcccccchhhhccccCcEEEccCccchhhc
Q 003899 143 HLRFLNLSRTSIQILPESINSLYNLNTILLEDCYQLKKL 181 (788)
Q Consensus 143 ~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~l 181 (788)
+|++|++++|+|+.+|..+++|++|++|++++| .+..+
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N-~i~~i 39 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNN-PISDI 39 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSS-CCSBE
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCC-CCCCC
Confidence 455555555555555555555555555555555 44443
No 47
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.17 E-value=3.1e-07 Score=89.43 Aligned_cols=90 Identities=22% Similarity=0.186 Sum_probs=52.0
Q ss_pred HHHHhCCCCCeeEEEccCCcCccc-----ccccccCCCCCceeeccCC----cccccchhh-------hccccCcEEEcc
Q 003899 110 VLQMLMNLPRLRVFSLHGYSNIIE-----LPNEIENLKHLRFLNLSRT----SIQILPESI-------NSLYNLNTILLE 173 (788)
Q Consensus 110 ~~~~~~~l~~Lr~L~L~~~~~l~~-----lp~~~~~l~~L~~L~L~~~----~i~~lp~~i-------~~L~~L~~L~L~ 173 (788)
+.+....+..+..++|++| .+.. +-..+.+.++||.-+++.- ...++|+.+ -..++|++||||
T Consensus 22 v~~~~~~~~s~~~l~lsgn-t~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLS 100 (382)
T KOG1909|consen 22 VEEELEPMDSLTKLDLSGN-TFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLS 100 (382)
T ss_pred HHHHhcccCceEEEeccCC-chhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeecc
Confidence 3346778888888888888 4432 3345666778888887732 223555543 233466777776
Q ss_pred Cccchhhchh----hhhcccCCceEecCCCc
Q 003899 174 DCYQLKKLCN----DMGNLKKLRHLKSSNVD 200 (788)
Q Consensus 174 ~~~~l~~lp~----~i~~L~~L~~L~l~~~~ 200 (788)
.|-.-..-++ -+.+.+.|++|+|.+|.
T Consensus 101 DNA~G~~g~~~l~~ll~s~~~L~eL~L~N~G 131 (382)
T KOG1909|consen 101 DNAFGPKGIRGLEELLSSCTDLEELYLNNCG 131 (382)
T ss_pred ccccCccchHHHHHHHHhccCHHHHhhhcCC
Confidence 6622111111 23455666666666665
No 48
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.15 E-value=2.4e-06 Score=57.98 Aligned_cols=41 Identities=34% Similarity=0.493 Sum_probs=35.9
Q ss_pred CCeeEEEccCCcCcccccccccCCCCCceeeccCCcccccch
Q 003899 118 PRLRVFSLHGYSNIIELPNEIENLKHLRFLNLSRTSIQILPE 159 (788)
Q Consensus 118 ~~Lr~L~L~~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~ 159 (788)
++|++|++++| .+.++|..+++|++|++|++++|.|+.+|.
T Consensus 1 ~~L~~L~l~~N-~i~~l~~~l~~l~~L~~L~l~~N~i~~i~~ 41 (44)
T PF12799_consen 1 KNLEELDLSNN-QITDLPPELSNLPNLETLNLSNNPISDISP 41 (44)
T ss_dssp TT-SEEEETSS-S-SSHGGHGTTCTTSSEEEETSSCCSBEGG
T ss_pred CcceEEEccCC-CCcccCchHhCCCCCCEEEecCCCCCCCcC
Confidence 57999999999 999999889999999999999999998754
No 49
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.09 E-value=6.3e-07 Score=87.38 Aligned_cols=91 Identities=19% Similarity=0.200 Sum_probs=53.4
Q ss_pred cccCCCceeEEEeccCCccccchhhhhHHHHhCCCCCeeEEEccCCc---Ccccccc-------cccCCCCCceeeccCC
Q 003899 83 SVCDVEHLRTFLPVNLSNYRINYLAWSVLQMLMNLPRLRVFSLHGYS---NIIELPN-------EIENLKHLRFLNLSRT 152 (788)
Q Consensus 83 ~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~---~l~~lp~-------~~~~l~~L~~L~L~~~ 152 (788)
....+..+..+.+.++.. . .--...+-..+.+.+.||.-++++-. -...+|+ ++-..++|++||||.|
T Consensus 25 ~~~~~~s~~~l~lsgnt~-G-~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDN 102 (382)
T KOG1909|consen 25 ELEPMDSLTKLDLSGNTF-G-TEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDN 102 (382)
T ss_pred HhcccCceEEEeccCCch-h-HHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeecccc
Confidence 344566677777777541 0 00011222367777788888887641 1123332 3335567888888888
Q ss_pred ccc-ccc----hhhhccccCcEEEccCc
Q 003899 153 SIQ-ILP----ESINSLYNLNTILLEDC 175 (788)
Q Consensus 153 ~i~-~lp----~~i~~L~~L~~L~L~~~ 175 (788)
.+. .-+ .-+.+++.|+.|.|.+|
T Consensus 103 A~G~~g~~~l~~ll~s~~~L~eL~L~N~ 130 (382)
T KOG1909|consen 103 AFGPKGIRGLEELLSSCTDLEELYLNNC 130 (382)
T ss_pred ccCccchHHHHHHHHhccCHHHHhhhcC
Confidence 775 222 33566788888888888
No 50
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.99 E-value=9.3e-07 Score=95.15 Aligned_cols=107 Identities=24% Similarity=0.288 Sum_probs=86.7
Q ss_pred CCCCCeeEEEccCCcCcccccccccCCCCCceeeccCCcccccchhhhccccCcEEEccCccchhhchhhhhcccCCceE
Q 003899 115 MNLPRLRVFSLHGYSNIIELPNEIENLKHLRFLNLSRTSIQILPESINSLYNLNTILLEDCYQLKKLCNDMGNLKKLRHL 194 (788)
Q Consensus 115 ~~l~~Lr~L~L~~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L 194 (788)
..+..+..+.+..| .+..+-..+..+.+|.+|++.+|.|..+...+..+++|++|++++| .+..+.. +..++.|+.|
T Consensus 69 ~~l~~l~~l~l~~n-~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N-~I~~i~~-l~~l~~L~~L 145 (414)
T KOG0531|consen 69 ESLTSLKELNLRQN-LIAKILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFN-KITKLEG-LSTLTLLKEL 145 (414)
T ss_pred HHhHhHHhhccchh-hhhhhhcccccccceeeeeccccchhhcccchhhhhcchheecccc-ccccccc-hhhccchhhh
Confidence 35566677778888 7877556688999999999999999999777899999999999999 8888864 8889999999
Q ss_pred ecCCCcCcccCCccCcCCCCcceeCceEeCCC
Q 003899 195 KSSNVDSLEEMPKGFGKLTCLLTLGTFVVGKD 226 (788)
Q Consensus 195 ~l~~~~~l~~~p~~i~~l~~L~~L~~~~~~~~ 226 (788)
++.+|. +..++ ++..+.+|+.+++.++...
T Consensus 146 ~l~~N~-i~~~~-~~~~l~~L~~l~l~~n~i~ 175 (414)
T KOG0531|consen 146 NLSGNL-ISDIS-GLESLKSLKLLDLSYNRIV 175 (414)
T ss_pred eeccCc-chhcc-CCccchhhhcccCCcchhh
Confidence 999998 65553 3555788888887665543
No 51
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.97 E-value=2.4e-06 Score=71.61 Aligned_cols=97 Identities=22% Similarity=0.223 Sum_probs=83.6
Q ss_pred hHHHHhCCCCCeeEEEccCCcCcccccccc-cCCCCCceeeccCCcccccchhhhccccCcEEEccCccchhhchhhhhc
Q 003899 109 SVLQMLMNLPRLRVFSLHGYSNIIELPNEI-ENLKHLRFLNLSRTSIQILPESINSLYNLNTILLEDCYQLKKLCNDMGN 187 (788)
Q Consensus 109 ~~~~~~~~l~~Lr~L~L~~~~~l~~lp~~~-~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~ 187 (788)
+.+..+.+..+|...+|++| .+.++|+.| ...+..+.|+|++|.|.++|.++..++.|+.|+++.| .+...|+-|..
T Consensus 44 davy~l~~~~el~~i~ls~N-~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N-~l~~~p~vi~~ 121 (177)
T KOG4579|consen 44 DAVYMLSKGYELTKISLSDN-GFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFN-PLNAEPRVIAP 121 (177)
T ss_pred HHHHHHhCCceEEEEecccc-hhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccC-ccccchHHHHH
Confidence 33446778888999999999 999999777 5667899999999999999999999999999999999 78888888888
Q ss_pred ccCCceEecCCCcCcccCCcc
Q 003899 188 LKKLRHLKSSNVDSLEEMPKG 208 (788)
Q Consensus 188 L~~L~~L~l~~~~~l~~~p~~ 208 (788)
|.+|-.|+..+|. ...+|..
T Consensus 122 L~~l~~Lds~~na-~~eid~d 141 (177)
T KOG4579|consen 122 LIKLDMLDSPENA-RAEIDVD 141 (177)
T ss_pred HHhHHHhcCCCCc-cccCcHH
Confidence 9999999999888 6677765
No 52
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.74 E-value=3.6e-06 Score=70.63 Aligned_cols=102 Identities=16% Similarity=0.220 Sum_probs=85.7
Q ss_pred CCeeEEEccCCcCccccc---ccccCCCCCceeeccCCcccccchhhhc-cccCcEEEccCccchhhchhhhhcccCCce
Q 003899 118 PRLRVFSLHGYSNIIELP---NEIENLKHLRFLNLSRTSIQILPESINS-LYNLNTILLEDCYQLKKLCNDMGNLKKLRH 193 (788)
Q Consensus 118 ~~Lr~L~L~~~~~l~~lp---~~~~~l~~L~~L~L~~~~i~~lp~~i~~-L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~ 193 (788)
+.+-.+||+.| .+..++ ..+.+..+|...+|++|.+...|..+.. .+.+.+|++++| .+.++|.++..++.|+.
T Consensus 27 kE~h~ldLssc-~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~n-eisdvPeE~Aam~aLr~ 104 (177)
T KOG4579|consen 27 KELHFLDLSSC-QLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANN-EISDVPEELAAMPALRS 104 (177)
T ss_pred HHhhhcccccc-hhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchh-hhhhchHHHhhhHHhhh
Confidence 34556788888 666555 4456777888899999999999988865 569999999999 99999999999999999
Q ss_pred EecCCCcCcccCCccCcCCCCcceeCceE
Q 003899 194 LKSSNVDSLEEMPKGFGKLTCLLTLGTFV 222 (788)
Q Consensus 194 L~l~~~~~l~~~p~~i~~l~~L~~L~~~~ 222 (788)
|+++.|. +...|+-|..|.+|-.|+.-.
T Consensus 105 lNl~~N~-l~~~p~vi~~L~~l~~Lds~~ 132 (177)
T KOG4579|consen 105 LNLRFNP-LNAEPRVIAPLIKLDMLDSPE 132 (177)
T ss_pred cccccCc-cccchHHHHHHHhHHHhcCCC
Confidence 9999999 888999888888888887643
No 53
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.68 E-value=2.9e-06 Score=90.38 Aligned_cols=107 Identities=25% Similarity=0.279 Sum_probs=83.3
Q ss_pred HhCCCCCeeEEEccCCcCcccccccccCCCCCceeeccCCcccccch-hhhccccCcEEEccCccchhhchhhhhcccCC
Q 003899 113 MLMNLPRLRVFSLHGYSNIIELPNEIENLKHLRFLNLSRTSIQILPE-SINSLYNLNTILLEDCYQLKKLCNDMGNLKKL 191 (788)
Q Consensus 113 ~~~~l~~Lr~L~L~~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L 191 (788)
++.-++.|+.|+|+.| .+.+. +.+..+.+|+.|||++|.+..+|. +...++ |+.|.+++| .++++- ++.+|++|
T Consensus 182 SLqll~ale~LnLshN-k~~~v-~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN-~l~tL~-gie~LksL 256 (1096)
T KOG1859|consen 182 SLQLLPALESLNLSHN-KFTKV-DNLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNN-ALTTLR-GIENLKSL 256 (1096)
T ss_pred HHHHHHHhhhhccchh-hhhhh-HHHHhcccccccccccchhccccccchhhhh-heeeeeccc-HHHhhh-hHHhhhhh
Confidence 7778889999999999 77776 478899999999999999998885 233444 999999998 788875 59999999
Q ss_pred ceEecCCCcCcccCCc--cCcCCCCcceeCceEeCC
Q 003899 192 RHLKSSNVDSLEEMPK--GFGKLTCLLTLGTFVVGK 225 (788)
Q Consensus 192 ~~L~l~~~~~l~~~p~--~i~~l~~L~~L~~~~~~~ 225 (788)
+.||+++|- +....+ .+..|..|+.|++-++..
T Consensus 257 ~~LDlsyNl-l~~hseL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 257 YGLDLSYNL-LSEHSELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred hccchhHhh-hhcchhhhHHHHHHHHHHHhhcCCcc
Confidence 999999986 433322 155677788887765543
No 54
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.56 E-value=2.1e-05 Score=75.06 Aligned_cols=86 Identities=23% Similarity=0.258 Sum_probs=46.1
Q ss_pred hCCCCCeeEEEccCCcCccccc---ccccCCCCCceeeccCCcccccchhh-hccccCcEEEccCccc-hhhchhhhhcc
Q 003899 114 LMNLPRLRVFSLHGYSNIIELP---NEIENLKHLRFLNLSRTSIQILPESI-NSLYNLNTILLEDCYQ-LKKLCNDMGNL 188 (788)
Q Consensus 114 ~~~l~~Lr~L~L~~~~~l~~lp---~~~~~l~~L~~L~L~~~~i~~lp~~i-~~L~~L~~L~L~~~~~-l~~lp~~i~~L 188 (788)
=..++.++.|||.+| .+.... .-+.+|++|++|+|++|.+..--.+. ..+.+|++|-|.++.. -+.....+..+
T Consensus 67 ~~~~~~v~elDL~~N-~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~l 145 (418)
T KOG2982|consen 67 GSSVTDVKELDLTGN-LISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDL 145 (418)
T ss_pred HHHhhhhhhhhcccc-hhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcc
Confidence 345666677777776 555432 12256777777777766654322222 3455666666666521 12222234555
Q ss_pred cCCceEecCCCc
Q 003899 189 KKLRHLKSSNVD 200 (788)
Q Consensus 189 ~~L~~L~l~~~~ 200 (788)
+.++.|+++.|.
T Consensus 146 P~vtelHmS~N~ 157 (418)
T KOG2982|consen 146 PKVTELHMSDNS 157 (418)
T ss_pred hhhhhhhhccch
Confidence 666666666654
No 55
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.52 E-value=2.1e-06 Score=91.43 Aligned_cols=117 Identities=24% Similarity=0.221 Sum_probs=91.8
Q ss_pred CeeEEEccCCcCcccccccccCCCCCceeeccCCcccccchhhhccccCcEEEccCccchhhchhh-hhcccCCceEecC
Q 003899 119 RLRVFSLHGYSNIIELPNEIENLKHLRFLNLSRTSIQILPESINSLYNLNTILLEDCYQLKKLCND-MGNLKKLRHLKSS 197 (788)
Q Consensus 119 ~Lr~L~L~~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~-i~~L~~L~~L~l~ 197 (788)
.|.+.++++| .+..+..++.-++.|+.|+|++|+++..- .+..|.+|++|||++| .+..+|.- ....+ |+.|.++
T Consensus 165 ~L~~a~fsyN-~L~~mD~SLqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN-~L~~vp~l~~~gc~-L~~L~lr 240 (1096)
T KOG1859|consen 165 KLATASFSYN-RLVLMDESLQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYN-CLRHVPQLSMVGCK-LQLLNLR 240 (1096)
T ss_pred hHhhhhcchh-hHHhHHHHHHHHHHhhhhccchhhhhhhH-HHHhcccccccccccc-hhccccccchhhhh-heeeeec
Confidence 4677788888 88777788888999999999999999886 6899999999999999 88888872 33444 9999999
Q ss_pred CCcCcccCCccCcCCCCcceeCceEeCCCCCCCcccccccccCC
Q 003899 198 NVDSLEEMPKGFGKLTCLLTLGTFVVGKDGGSGLRELKSLTHLQ 241 (788)
Q Consensus 198 ~~~~l~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~ 241 (788)
+|. +..+ .++.+|++|+.|++.++-......+.-|..|..|+
T Consensus 241 nN~-l~tL-~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~ 282 (1096)
T KOG1859|consen 241 NNA-LTTL-RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLI 282 (1096)
T ss_pred ccH-HHhh-hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHH
Confidence 997 6555 57899999999999777665555554455555444
No 56
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.51 E-value=0.00012 Score=82.35 Aligned_cols=83 Identities=20% Similarity=0.254 Sum_probs=45.6
Q ss_pred CCCceeEEEeccCCccccchhhhhHHHHhCCCCCeeEEEccCCcCcccccccccCCCCCceeeccCCccccc--chhhhc
Q 003899 86 DVEHLRTFLPVNLSNYRINYLAWSVLQMLMNLPRLRVFSLHGYSNIIELPNEIENLKHLRFLNLSRTSIQIL--PESINS 163 (788)
Q Consensus 86 ~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~l--p~~i~~ 163 (788)
-+|.||+|.+.+-.. ...++...+.++++|+.||++++ ++..+ .++++|++|+.|.+++-.+..- -..+..
T Consensus 146 ~LPsL~sL~i~~~~~-----~~~dF~~lc~sFpNL~sLDIS~T-nI~nl-~GIS~LknLq~L~mrnLe~e~~~~l~~LF~ 218 (699)
T KOG3665|consen 146 MLPSLRSLVISGRQF-----DNDDFSQLCASFPNLRSLDISGT-NISNL-SGISRLKNLQVLSMRNLEFESYQDLIDLFN 218 (699)
T ss_pred hCcccceEEecCcee-----cchhHHHHhhccCccceeecCCC-CccCc-HHHhccccHHHHhccCCCCCchhhHHHHhc
Confidence 355666665555321 11233335566666666666666 66555 5566666666666665554432 234556
Q ss_pred cccCcEEEccCc
Q 003899 164 LYNLNTILLEDC 175 (788)
Q Consensus 164 L~~L~~L~L~~~ 175 (788)
|++|++||+|..
T Consensus 219 L~~L~vLDIS~~ 230 (699)
T KOG3665|consen 219 LKKLRVLDISRD 230 (699)
T ss_pred ccCCCeeecccc
Confidence 666666666654
No 57
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.49 E-value=0.00016 Score=65.40 Aligned_cols=102 Identities=23% Similarity=0.301 Sum_probs=75.3
Q ss_pred CeeEEEccCCcCcccccccccCCCCCceeeccCCcccccchhhhc-cccCcEEEccCccchhhchh--hhhcccCCceEe
Q 003899 119 RLRVFSLHGYSNIIELPNEIENLKHLRFLNLSRTSIQILPESINS-LYNLNTILLEDCYQLKKLCN--DMGNLKKLRHLK 195 (788)
Q Consensus 119 ~Lr~L~L~~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~-L~~L~~L~L~~~~~l~~lp~--~i~~L~~L~~L~ 195 (788)
+.-.+||++| .+..+ ..|.++..|..|.|.+|+|+.+-+.+.. +++|..|.|.+| .+.++-+ .+..+++|++|.
T Consensus 43 ~~d~iDLtdN-dl~~l-~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnN-si~~l~dl~pLa~~p~L~~Lt 119 (233)
T KOG1644|consen 43 QFDAIDLTDN-DLRKL-DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNN-SIQELGDLDPLASCPKLEYLT 119 (233)
T ss_pred ccceeccccc-chhhc-ccCCCccccceEEecCCcceeeccchhhhccccceEEecCc-chhhhhhcchhccCCccceee
Confidence 4567888888 77776 4577888899999999999988555654 677999999888 6666543 267788889998
Q ss_pred cCCCcCcccCCc----cCcCCCCcceeCceEeC
Q 003899 196 SSNVDSLEEMPK----GFGKLTCLLTLGTFVVG 224 (788)
Q Consensus 196 l~~~~~l~~~p~----~i~~l~~L~~L~~~~~~ 224 (788)
+-+|. ...-+. -+.++++|++|+...+.
T Consensus 120 ll~Np-v~~k~~YR~yvl~klp~l~~LDF~kVt 151 (233)
T KOG1644|consen 120 LLGNP-VEHKKNYRLYVLYKLPSLRTLDFQKVT 151 (233)
T ss_pred ecCCc-hhcccCceeEEEEecCcceEeehhhhh
Confidence 88887 444332 16778888888875554
No 58
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.46 E-value=6.5e-05 Score=84.48 Aligned_cols=81 Identities=19% Similarity=0.285 Sum_probs=36.0
Q ss_pred CCceeeccCCccc-cc-chhhhc-cccCcEEEccCccc-hhhchhhhhcccCCceEecCCCcCcccCCccCcCCCCccee
Q 003899 143 HLRFLNLSRTSIQ-IL-PESINS-LYNLNTILLEDCYQ-LKKLCNDMGNLKKLRHLKSSNVDSLEEMPKGFGKLTCLLTL 218 (788)
Q Consensus 143 ~L~~L~L~~~~i~-~l-p~~i~~-L~~L~~L~L~~~~~-l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~i~~l~~L~~L 218 (788)
+|++|+++|...- .- |..++. |+.|+.|.+++-.. ..+.-.-..++++|+.||++++. +..+ .+++.|++||.|
T Consensus 123 nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~Tn-I~nl-~GIS~LknLq~L 200 (699)
T KOG3665|consen 123 NLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTN-ISNL-SGISRLKNLQVL 200 (699)
T ss_pred hhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCC-ccCc-HHHhccccHHHH
Confidence 4555555543321 11 233333 55555555554211 11112223445555555555555 4444 445555555555
Q ss_pred CceEeCC
Q 003899 219 GTFVVGK 225 (788)
Q Consensus 219 ~~~~~~~ 225 (788)
.+.+...
T Consensus 201 ~mrnLe~ 207 (699)
T KOG3665|consen 201 SMRNLEF 207 (699)
T ss_pred hccCCCC
Confidence 5544333
No 59
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.33 E-value=1e-05 Score=90.13 Aligned_cols=61 Identities=26% Similarity=0.311 Sum_probs=30.6
Q ss_pred eEecCCCCCc-ccchhhcCCCCCCCceecccCCCCcccCCC--CC-cCCcceEeecCChhHHHhh
Q 003899 704 ELWISDMPDL-ECLSSISENLTSLEFLYLIDCPKLKYFPEQ--GL-PKSLSRLSIHNCPLIEKRC 764 (788)
Q Consensus 704 ~L~l~~~~~l-~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~--~~-~~~L~~L~i~~c~~l~~~~ 764 (788)
.+.+.+|+.+ ..+..-......++.|++..|...+.-.-. +. ...++.+++.+|+.+....
T Consensus 380 ~~~l~gc~~l~~~l~~~~~~~~~l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~~~~~~ 444 (482)
T KOG1947|consen 380 ELSLRGCPNLTESLELRLCRSDSLRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCRVITLKS 444 (482)
T ss_pred HHHhcCCcccchHHHHHhccCCccceEecccCccccccchHHHhhhhhccccCCccCcccccchh
Confidence 3455555555 333333334444677777777543322111 11 3456667777776655443
No 60
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.32 E-value=3.3e-05 Score=73.80 Aligned_cols=101 Identities=20% Similarity=0.140 Sum_probs=63.9
Q ss_pred CeeEEEccCCcCccccc--ccc-cCCCCCceeeccCCcccc---cchhhhccccCcEEEccCcc---chhhchhhhhccc
Q 003899 119 RLRVFSLHGYSNIIELP--NEI-ENLKHLRFLNLSRTSIQI---LPESINSLYNLNTILLEDCY---QLKKLCNDMGNLK 189 (788)
Q Consensus 119 ~Lr~L~L~~~~~l~~lp--~~~-~~l~~L~~L~L~~~~i~~---lp~~i~~L~~L~~L~L~~~~---~l~~lp~~i~~L~ 189 (788)
.+..|.+.++ .+...- ..| ....+++.|||.+|.|.. +-.-..+|++|++|+|+.|. .++.+| ..+.
T Consensus 46 a~ellvln~~-~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp---~p~~ 121 (418)
T KOG2982|consen 46 ALELLVLNGS-IIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLP---LPLK 121 (418)
T ss_pred chhhheecCC-CCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCc---cccc
Confidence 3445556666 565543 234 466788889999988873 33334678889999998883 223333 3467
Q ss_pred CCceEecCCCcCc-ccCCccCcCCCCcceeCceEe
Q 003899 190 KLRHLKSSNVDSL-EEMPKGFGKLTCLLTLGTFVV 223 (788)
Q Consensus 190 ~L~~L~l~~~~~l-~~~p~~i~~l~~L~~L~~~~~ 223 (788)
+|+.|-+.+...- ......+..++.+++|++..+
T Consensus 122 nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N 156 (418)
T KOG2982|consen 122 NLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDN 156 (418)
T ss_pred ceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccc
Confidence 8888888877621 223334667777777776554
No 61
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.01 E-value=0.00027 Score=66.81 Aligned_cols=92 Identities=25% Similarity=0.244 Sum_probs=60.8
Q ss_pred HhCCCCCeeEEEccCCcCccc-----ccccccCCCCCceeeccCCcc----cccch-------hhhccccCcEEEccCcc
Q 003899 113 MLMNLPRLRVFSLHGYSNIIE-----LPNEIENLKHLRFLNLSRTSI----QILPE-------SINSLYNLNTILLEDCY 176 (788)
Q Consensus 113 ~~~~l~~Lr~L~L~~~~~l~~-----lp~~~~~l~~L~~L~L~~~~i----~~lp~-------~i~~L~~L~~L~L~~~~ 176 (788)
.+..+..+..++|++| .+.+ +-..|.+-.+|++-+++.--. .++|+ .+-++++|+..+|+.|-
T Consensus 25 el~~~d~~~evdLSGN-tigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNA 103 (388)
T COG5238 25 ELEMMDELVEVDLSGN-TIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNA 103 (388)
T ss_pred HHHhhcceeEEeccCC-cccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccc
Confidence 4556889999999999 5542 335567778888888874311 13343 34577888888888884
Q ss_pred chhhchhh----hhcccCCceEecCCCcCcccCC
Q 003899 177 QLKKLCND----MGNLKKLRHLKSSNVDSLEEMP 206 (788)
Q Consensus 177 ~l~~lp~~----i~~L~~L~~L~l~~~~~l~~~p 206 (788)
.-.+.|+. |++-+.|.||.+++|. ++.+.
T Consensus 104 fg~~~~e~L~d~is~~t~l~HL~l~NnG-lGp~a 136 (388)
T COG5238 104 FGSEFPEELGDLISSSTDLVHLKLNNNG-LGPIA 136 (388)
T ss_pred cCcccchHHHHHHhcCCCceeEEeecCC-CCccc
Confidence 33333332 4666788888888887 55443
No 62
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.88 E-value=0.0012 Score=59.93 Aligned_cols=102 Identities=20% Similarity=0.307 Sum_probs=75.4
Q ss_pred eeEEEccCCcCcccccccc-cCCCCCceeeccCCcccccchhhhccccCcEEEccCccchhhchhhhh-cccCCceEecC
Q 003899 120 LRVFSLHGYSNIIELPNEI-ENLKHLRFLNLSRTSIQILPESINSLYNLNTILLEDCYQLKKLCNDMG-NLKKLRHLKSS 197 (788)
Q Consensus 120 Lr~L~L~~~~~l~~lp~~~-~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~-~L~~L~~L~l~ 197 (788)
=+.++|.+. .+..+- .+ .-+.+...+||++|.+..++. +..+.+|.+|.+++| .+..+-..+. .+++|..|.+.
T Consensus 21 e~e~~LR~l-kip~ie-nlg~~~d~~d~iDLtdNdl~~l~~-lp~l~rL~tLll~nN-rIt~I~p~L~~~~p~l~~L~Lt 96 (233)
T KOG1644|consen 21 ERELDLRGL-KIPVIE-NLGATLDQFDAIDLTDNDLRKLDN-LPHLPRLHTLLLNNN-RITRIDPDLDTFLPNLKTLILT 96 (233)
T ss_pred ccccccccc-cccchh-hccccccccceecccccchhhccc-CCCccccceEEecCC-cceeeccchhhhccccceEEec
Confidence 566677766 544332 12 123467889999999998865 889999999999999 7888866764 56789999999
Q ss_pred CCcCcccCCc--cCcCCCCcceeCceEeCCC
Q 003899 198 NVDSLEEMPK--GFGKLTCLLTLGTFVVGKD 226 (788)
Q Consensus 198 ~~~~l~~~p~--~i~~l~~L~~L~~~~~~~~ 226 (788)
+|. +..+.+ .+..++.|++|.+.++..+
T Consensus 97 nNs-i~~l~dl~pLa~~p~L~~Ltll~Npv~ 126 (233)
T KOG1644|consen 97 NNS-IQELGDLDPLASCPKLEYLTLLGNPVE 126 (233)
T ss_pred Ccc-hhhhhhcchhccCCccceeeecCCchh
Confidence 998 766653 3677788888887665543
No 63
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.87 E-value=8.2e-05 Score=82.78 Aligned_cols=39 Identities=21% Similarity=0.146 Sum_probs=24.0
Q ss_pred CCeEecCCCCCcccchhh--cCCCCCCCceecccCCCCccc
Q 003899 702 LTELWISDMPDLECLSSI--SENLTSLEFLYLIDCPKLKYF 740 (788)
Q Consensus 702 L~~L~l~~~~~l~~l~~~--~~~l~~L~~L~l~~c~~l~~l 740 (788)
++.|.+..|...+.---. ...+.+++.+++.+|+.+..-
T Consensus 403 l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~~~~~ 443 (482)
T KOG1947|consen 403 LRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCRVITLK 443 (482)
T ss_pred cceEecccCccccccchHHHhhhhhccccCCccCcccccch
Confidence 777777777655432211 112777888888888766544
No 64
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.86 E-value=8.1e-05 Score=70.52 Aligned_cols=100 Identities=21% Similarity=0.253 Sum_probs=56.9
Q ss_pred CCCeeEEEccCCcCcccccccccCCCCCceeeccCCcccccchhhhccccCcEEEccCccchhhchh--hhhcccCCceE
Q 003899 117 LPRLRVFSLHGYSNIIELPNEIENLKHLRFLNLSRTSIQILPESINSLYNLNTILLEDCYQLKKLCN--DMGNLKKLRHL 194 (788)
Q Consensus 117 l~~Lr~L~L~~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~--~i~~L~~L~~L 194 (788)
+.+.+-|++-|| ++..+ ....+|+.|++|.|+-|.|+.+-. +..+++|+.|.|+.| .+..+-+ -+.++++|+.|
T Consensus 18 l~~vkKLNcwg~-~L~DI-sic~kMp~lEVLsLSvNkIssL~p-l~rCtrLkElYLRkN-~I~sldEL~YLknlpsLr~L 93 (388)
T KOG2123|consen 18 LENVKKLNCWGC-GLDDI-SICEKMPLLEVLSLSVNKISSLAP-LQRCTRLKELYLRKN-CIESLDELEYLKNLPSLRTL 93 (388)
T ss_pred HHHhhhhcccCC-CccHH-HHHHhcccceeEEeeccccccchh-HHHHHHHHHHHHHhc-ccccHHHHHHHhcCchhhhH
Confidence 444555666666 66555 233566666666666666666632 666666666666666 4443322 14566667777
Q ss_pred ecCCCcCcccCCcc-----CcCCCCcceeCc
Q 003899 195 KSSNVDSLEEMPKG-----FGKLTCLLTLGT 220 (788)
Q Consensus 195 ~l~~~~~l~~~p~~-----i~~l~~L~~L~~ 220 (788)
.+..|.-...-+.. +.-|++|+.|+-
T Consensus 94 WL~ENPCc~~ag~nYR~~VLR~LPnLkKLDn 124 (388)
T KOG2123|consen 94 WLDENPCCGEAGQNYRRKVLRVLPNLKKLDN 124 (388)
T ss_pred hhccCCcccccchhHHHHHHHHcccchhccC
Confidence 77666533333322 445566666653
No 65
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.78 E-value=0.00066 Score=64.45 Aligned_cols=106 Identities=22% Similarity=0.227 Sum_probs=64.1
Q ss_pred hCCCCCeeEEEccCCcCcccccccccCCCCCceeeccCC--ccc-ccchhhhccccCcEEEccCccchh---hchhhhhc
Q 003899 114 LMNLPRLRVFSLHGYSNIIELPNEIENLKHLRFLNLSRT--SIQ-ILPESINSLYNLNTILLEDCYQLK---KLCNDMGN 187 (788)
Q Consensus 114 ~~~l~~Lr~L~L~~~~~l~~lp~~~~~l~~L~~L~L~~~--~i~-~lp~~i~~L~~L~~L~L~~~~~l~---~lp~~i~~ 187 (788)
+..+..|+.|++.+. .++++ ..+..|++|++|.++.| .+. .++....++++|++|++++| ++. .++. +..
T Consensus 39 ~d~~~~le~ls~~n~-gltt~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~N-ki~~lstl~p-l~~ 114 (260)
T KOG2739|consen 39 TDEFVELELLSVINV-GLTTL-TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGN-KIKDLSTLRP-LKE 114 (260)
T ss_pred cccccchhhhhhhcc-ceeec-ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCC-ccccccccch-hhh
Confidence 334445555555555 55544 44557778888888877 444 45544555688888888887 443 3332 566
Q ss_pred ccCCceEecCCCcCcccCCcc----CcCCCCcceeCceEeC
Q 003899 188 LKKLRHLKSSNVDSLEEMPKG----FGKLTCLLTLGTFVVG 224 (788)
Q Consensus 188 L~~L~~L~l~~~~~l~~~p~~----i~~l~~L~~L~~~~~~ 224 (788)
+.+|..|++.+|... .+-+- +.-+++|.+|+...+.
T Consensus 115 l~nL~~Ldl~n~~~~-~l~dyre~vf~ll~~L~~LD~~dv~ 154 (260)
T KOG2739|consen 115 LENLKSLDLFNCSVT-NLDDYREKVFLLLPSLKYLDGCDVD 154 (260)
T ss_pred hcchhhhhcccCCcc-ccccHHHHHHHHhhhhccccccccC
Confidence 777778888877622 22211 4556777777765544
No 66
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.72 E-value=0.00017 Score=68.45 Aligned_cols=100 Identities=22% Similarity=0.286 Sum_probs=76.5
Q ss_pred CCCceeEEEeccCCccccchhhhhHHHHhCCCCCeeEEEccCCcCcccccccccCCCCCceeeccCCcccccc--hhhhc
Q 003899 86 DVEHLRTFLPVNLSNYRINYLAWSVLQMLMNLPRLRVFSLHGYSNIIELPNEIENLKHLRFLNLSRTSIQILP--ESINS 163 (788)
Q Consensus 86 ~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp--~~i~~ 163 (788)
++.+.+.|.+++.. ........+|+.|.||.|+-| .|.++ ..+.++++|+.|+|+.|.|..+- ..+.+
T Consensus 17 dl~~vkKLNcwg~~--------L~DIsic~kMp~lEVLsLSvN-kIssL-~pl~rCtrLkElYLRkN~I~sldEL~YLkn 86 (388)
T KOG2123|consen 17 DLENVKKLNCWGCG--------LDDISICEKMPLLEVLSLSVN-KISSL-APLQRCTRLKELYLRKNCIESLDELEYLKN 86 (388)
T ss_pred HHHHhhhhcccCCC--------ccHHHHHHhcccceeEEeecc-ccccc-hhHHHHHHHHHHHHHhcccccHHHHHHHhc
Confidence 35566777777643 222235789999999999999 99998 56889999999999999999874 45788
Q ss_pred cccCcEEEccCccchhhchh-----hhhcccCCceEe
Q 003899 164 LYNLNTILLEDCYQLKKLCN-----DMGNLKKLRHLK 195 (788)
Q Consensus 164 L~~L~~L~L~~~~~l~~lp~-----~i~~L~~L~~L~ 195 (788)
|++|+.|.|..|.--.+-+. -+..|++|+.||
T Consensus 87 lpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 87 LPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred CchhhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 99999999998843333332 256788888886
No 67
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.51 E-value=0.0011 Score=37.24 Aligned_cols=19 Identities=32% Similarity=0.667 Sum_probs=9.4
Q ss_pred CceeeccCCcccccchhhh
Q 003899 144 LRFLNLSRTSIQILPESIN 162 (788)
Q Consensus 144 L~~L~L~~~~i~~lp~~i~ 162 (788)
|++|||++|+|+.+|.+|+
T Consensus 2 L~~Ldls~n~l~~ip~~~~ 20 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSSFS 20 (22)
T ss_dssp ESEEEETSSEESEEGTTTT
T ss_pred ccEEECCCCcCEeCChhhc
Confidence 4555555555555544443
No 68
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.89 E-value=0.0053 Score=58.45 Aligned_cols=95 Identities=28% Similarity=0.317 Sum_probs=67.4
Q ss_pred HhCCCCCeeEEEccCC--cCcccccccccCCCCCceeeccCCccccc--chhhhccccCcEEEccCccchhhch--h--h
Q 003899 113 MLMNLPRLRVFSLHGY--SNIIELPNEIENLKHLRFLNLSRTSIQIL--PESINSLYNLNTILLEDCYQLKKLC--N--D 184 (788)
Q Consensus 113 ~~~~l~~Lr~L~L~~~--~~l~~lp~~~~~l~~L~~L~L~~~~i~~l--p~~i~~L~~L~~L~L~~~~~l~~lp--~--~ 184 (788)
.|..+++|+.|+++.| +....++.-...+++|++|++++|+|..+ -.....+.+|..|++.+|. ...+- + .
T Consensus 60 ~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~-~~~l~dyre~v 138 (260)
T KOG2739|consen 60 NFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCS-VTNLDDYREKV 138 (260)
T ss_pred cCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCC-ccccccHHHHH
Confidence 4778889999999998 33344544445669999999999998754 1346788889999999883 33231 1 2
Q ss_pred hhcccCCceEecCCCcCcccCCccC
Q 003899 185 MGNLKKLRHLKSSNVDSLEEMPKGF 209 (788)
Q Consensus 185 i~~L~~L~~L~l~~~~~l~~~p~~i 209 (788)
+.-+++|++||-.... -...|...
T Consensus 139 f~ll~~L~~LD~~dv~-~~Ea~~~~ 162 (260)
T KOG2739|consen 139 FLLLPSLKYLDGCDVD-GEEAPEAD 162 (260)
T ss_pred HHHhhhhccccccccC-Cccccccc
Confidence 5678999999988776 45555543
No 69
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.50 E-value=0.0063 Score=34.10 Aligned_cols=21 Identities=24% Similarity=0.317 Sum_probs=13.6
Q ss_pred cCcEEEccCccchhhchhhhhc
Q 003899 166 NLNTILLEDCYQLKKLCNDMGN 187 (788)
Q Consensus 166 ~L~~L~L~~~~~l~~lp~~i~~ 187 (788)
+|++|||++| .++.+|.+|++
T Consensus 1 ~L~~Ldls~n-~l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGN-NLTSIPSSFSN 21 (22)
T ss_dssp TESEEEETSS-EESEEGTTTTT
T ss_pred CccEEECCCC-cCEeCChhhcC
Confidence 4677777777 66667666543
No 70
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=95.14 E-value=0.00098 Score=61.67 Aligned_cols=86 Identities=14% Similarity=0.202 Sum_probs=68.3
Q ss_pred HhCCCCCeeEEEccCCcCcccccccccCCCCCceeeccCCcccccchhhhccccCcEEEccCccchhhchhhhhcccCCc
Q 003899 113 MLMNLPRLRVFSLHGYSNIIELPNEIENLKHLRFLNLSRTSIQILPESINSLYNLNTILLEDCYQLKKLCNDMGNLKKLR 192 (788)
Q Consensus 113 ~~~~l~~Lr~L~L~~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~ 192 (788)
.+..++...+||++.| .+..+-..|+.+..|..|+++.|.|..+|..++.+..++.+++..| .....|.+++++++++
T Consensus 37 ei~~~kr~tvld~~s~-r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n-~~~~~p~s~~k~~~~k 114 (326)
T KOG0473|consen 37 EIASFKRVTVLDLSSN-RLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKN-NHSQQPKSQKKEPHPK 114 (326)
T ss_pred hhhccceeeeehhhhh-HHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhcc-chhhCCccccccCCcc
Confidence 5667778888888888 6666666677777888888888888888888888888888888777 7778888888888888
Q ss_pred eEecCCCc
Q 003899 193 HLKSSNVD 200 (788)
Q Consensus 193 ~L~l~~~~ 200 (788)
+++..++.
T Consensus 115 ~~e~k~~~ 122 (326)
T KOG0473|consen 115 KNEQKKTE 122 (326)
T ss_pred hhhhccCc
Confidence 88887776
No 71
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=95.14 E-value=0.046 Score=47.91 Aligned_cols=102 Identities=13% Similarity=0.233 Sum_probs=47.0
Q ss_pred cccCCCceeEEEeccCCccccchhhhhHHH-HhCCCCCeeEEEccCCcCccccc-ccccCCCCCceeeccCCcccccc-h
Q 003899 83 SVCDVEHLRTFLPVNLSNYRINYLAWSVLQ-MLMNLPRLRVFSLHGYSNIIELP-NEIENLKHLRFLNLSRTSIQILP-E 159 (788)
Q Consensus 83 ~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~-~~~~l~~Lr~L~L~~~~~l~~lp-~~~~~l~~L~~L~L~~~~i~~lp-~ 159 (788)
.|.++++|+.+.+...- ..+.. .|..++.|+.+.+..+ +..++ ..|.++..|+.+.+.. .+..++ .
T Consensus 7 ~F~~~~~l~~i~~~~~~--------~~I~~~~F~~~~~l~~i~~~~~--~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~ 75 (129)
T PF13306_consen 7 AFYNCSNLESITFPNTI--------KKIGENAFSNCTSLKSINFPNN--LTSIGDNAFSNCKSLESITFPN-NLKSIGDN 75 (129)
T ss_dssp TTTT-TT--EEEETST----------EE-TTTTTT-TT-SEEEESST--TSCE-TTTTTT-TT-EEEEETS-TT-EE-TT
T ss_pred HHhCCCCCCEEEECCCe--------eEeChhhccccccccccccccc--ccccceeeeecccccccccccc-cccccccc
Confidence 35556666666554321 23334 5667766777776553 55554 4566666677777754 455553 3
Q ss_pred hhhccccCcEEEccCccchhhchhh-hhcccCCceEecCC
Q 003899 160 SINSLYNLNTILLEDCYQLKKLCND-MGNLKKLRHLKSSN 198 (788)
Q Consensus 160 ~i~~L~~L~~L~L~~~~~l~~lp~~-i~~L~~L~~L~l~~ 198 (788)
.+..+++|+.+++..+ +..++.. +... +|+.+.+..
T Consensus 76 ~F~~~~~l~~i~~~~~--~~~i~~~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 76 AFSNCTNLKNIDIPSN--ITEIGSSSFSNC-NLKEINIPS 112 (129)
T ss_dssp TTTT-TTECEEEETTT---BEEHTTTTTT--T--EEE-TT
T ss_pred cccccccccccccCcc--ccEEchhhhcCC-CceEEEECC
Confidence 4455667777776543 4444443 4554 666666554
No 72
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=94.57 E-value=0.017 Score=55.02 Aligned_cols=89 Identities=17% Similarity=0.122 Sum_probs=49.6
Q ss_pred ccCCCceeEEEeccCCccccchhhhhHHHHhCCCCCeeEEEccCCcCcc----ccc-------ccccCCCCCceeeccCC
Q 003899 84 VCDVEHLRTFLPVNLSNYRINYLAWSVLQMLMNLPRLRVFSLHGYSNII----ELP-------NEIENLKHLRFLNLSRT 152 (788)
Q Consensus 84 ~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~l~----~lp-------~~~~~l~~L~~L~L~~~ 152 (788)
+..+..+..+.++++.-- .-....+...+.+-++|++.+++.- ... .+| ..+-++++|+..+|+.|
T Consensus 26 l~~~d~~~evdLSGNtig--tEA~e~l~~~ia~~~~L~vvnfsd~-ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDN 102 (388)
T COG5238 26 LEMMDELVEVDLSGNTIG--TEAMEELCNVIANVRNLRVVNFSDA-FTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDN 102 (388)
T ss_pred HHhhcceeEEeccCCccc--HHHHHHHHHHHhhhcceeEeehhhh-hhcccHHHHHHHHHHHHHHHhcCCcceeeecccc
Confidence 334566666666664310 0011222335666777777777654 221 122 34456777777777777
Q ss_pred ccc-ccc----hhhhccccCcEEEccCc
Q 003899 153 SIQ-ILP----ESINSLYNLNTILLEDC 175 (788)
Q Consensus 153 ~i~-~lp----~~i~~L~~L~~L~L~~~ 175 (788)
.+. +.| +.|++-+.|.+|.+++|
T Consensus 103 Afg~~~~e~L~d~is~~t~l~HL~l~Nn 130 (388)
T COG5238 103 AFGSEFPEELGDLISSSTDLVHLKLNNN 130 (388)
T ss_pred ccCcccchHHHHHHhcCCCceeEEeecC
Confidence 765 233 34566677777777777
No 73
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=94.55 E-value=0.023 Score=29.44 Aligned_cols=14 Identities=43% Similarity=0.584 Sum_probs=4.5
Q ss_pred CceeeccCCccccc
Q 003899 144 LRFLNLSRTSIQIL 157 (788)
Q Consensus 144 L~~L~L~~~~i~~l 157 (788)
|+.|+|++|+++++
T Consensus 3 L~~L~l~~n~L~~l 16 (17)
T PF13504_consen 3 LRTLDLSNNRLTSL 16 (17)
T ss_dssp -SEEEETSS--SSE
T ss_pred cCEEECCCCCCCCC
Confidence 44444444444333
No 74
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=94.36 E-value=0.0027 Score=58.85 Aligned_cols=88 Identities=23% Similarity=0.238 Sum_probs=79.6
Q ss_pred ccccc-ccccCCCCCceeeccCCcccccchhhhccccCcEEEccCccchhhchhhhhcccCCceEecCCCcCcccCCccC
Q 003899 131 IIELP-NEIENLKHLRFLNLSRTSIQILPESINSLYNLNTILLEDCYQLKKLCNDMGNLKKLRHLKSSNVDSLEEMPKGF 209 (788)
Q Consensus 131 l~~lp-~~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~i 209 (788)
+..+| ..+.....-+.||++.|++..+-..++.++.|..||++.| .+..+|.+++.+..++++++..|. ....|.++
T Consensus 30 ~s~~~v~ei~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~skn-q~~~~~~d~~q~~e~~~~~~~~n~-~~~~p~s~ 107 (326)
T KOG0473|consen 30 LSEIPVREIASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKN-QIKFLPKDAKQQRETVNAASHKNN-HSQQPKSQ 107 (326)
T ss_pred hcccchhhhhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHh-hHhhChhhHHHHHHHHHHHhhccc-hhhCCccc
Confidence 44566 6678888999999999999988888999999999999998 899999999999999999999888 89999999
Q ss_pred cCCCCcceeCc
Q 003899 210 GKLTCLLTLGT 220 (788)
Q Consensus 210 ~~l~~L~~L~~ 220 (788)
++++.+++++.
T Consensus 108 ~k~~~~k~~e~ 118 (326)
T KOG0473|consen 108 KKEPHPKKNEQ 118 (326)
T ss_pred cccCCcchhhh
Confidence 99999998876
No 75
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=92.89 E-value=0.15 Score=44.52 Aligned_cols=100 Identities=16% Similarity=0.328 Sum_probs=61.3
Q ss_pred HhCCCCCeeEEEccCCcCccccc-ccccCCCCCceeeccCCcccccc-hhhhccccCcEEEccCccchhhchhh-hhccc
Q 003899 113 MLMNLPRLRVFSLHGYSNIIELP-NEIENLKHLRFLNLSRTSIQILP-ESINSLYNLNTILLEDCYQLKKLCND-MGNLK 189 (788)
Q Consensus 113 ~~~~l~~Lr~L~L~~~~~l~~lp-~~~~~l~~L~~L~L~~~~i~~lp-~~i~~L~~L~~L~L~~~~~l~~lp~~-i~~L~ 189 (788)
+|.++++|+.+.+.. .+..++ ..|.++.+|+.+.+..+ +..++ ..+..+.+|+.+.+.. .+..++.. +...+
T Consensus 7 ~F~~~~~l~~i~~~~--~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~--~~~~i~~~~F~~~~ 81 (129)
T PF13306_consen 7 AFYNCSNLESITFPN--TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN--NLKSIGDNAFSNCT 81 (129)
T ss_dssp TTTT-TT--EEEETS--T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS--TT-EE-TTTTTT-T
T ss_pred HHhCCCCCCEEEECC--CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc--cccccccccccccc
Confidence 688999999999874 577776 66889989999999875 78875 5677888899999965 45555554 67789
Q ss_pred CCceEecCCCcCcccCCcc-CcCCCCcceeCc
Q 003899 190 KLRHLKSSNVDSLEEMPKG-FGKLTCLLTLGT 220 (788)
Q Consensus 190 ~L~~L~l~~~~~l~~~p~~-i~~l~~L~~L~~ 220 (788)
+|+.+++..+ +..++.. +.+. +++.+.+
T Consensus 82 ~l~~i~~~~~--~~~i~~~~f~~~-~l~~i~~ 110 (129)
T PF13306_consen 82 NLKNIDIPSN--ITEIGSSSFSNC-NLKEINI 110 (129)
T ss_dssp TECEEEETTT---BEEHTTTTTT--T--EEE-
T ss_pred cccccccCcc--ccEEchhhhcCC-CceEEEE
Confidence 9999998764 5556554 5555 6666543
No 76
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=92.84 E-value=0.069 Score=27.63 Aligned_cols=17 Identities=35% Similarity=0.710 Sum_probs=11.4
Q ss_pred CCeeEEEccCCcCccccc
Q 003899 118 PRLRVFSLHGYSNIIELP 135 (788)
Q Consensus 118 ~~Lr~L~L~~~~~l~~lp 135 (788)
++|++|++++| .++++|
T Consensus 1 ~~L~~L~l~~n-~L~~lP 17 (17)
T PF13504_consen 1 PNLRTLDLSNN-RLTSLP 17 (17)
T ss_dssp TT-SEEEETSS---SSE-
T ss_pred CccCEEECCCC-CCCCCc
Confidence 47999999999 788876
No 77
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.52 E-value=0.018 Score=52.59 Aligned_cols=85 Identities=21% Similarity=0.213 Sum_probs=55.8
Q ss_pred CccEEEEeccCCCCcccccccCCCCCccEEEEcCCCCCccc-----CCCCCCCCCeEecCCCCCcccchh-hcCCCCCCC
Q 003899 654 NLQSLEVRDLKITKPLLEWGLNRFTSLRNLSIGGGYPDLLS-----SPPFPASLTELWISDMPDLECLSS-ISENLTSLE 727 (788)
Q Consensus 654 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-----~~~~~~~L~~L~l~~~~~l~~l~~-~~~~l~~L~ 727 (788)
.++.++-+++..+.+-. ..+.++++++.|.+.. |..+.. +....++|+.|+|++|+.+++--- .+..+++|+
T Consensus 102 ~IeaVDAsds~I~~eGl-e~L~~l~~i~~l~l~~-ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr 179 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGL-EHLRDLRSIKSLSLAN-CKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLR 179 (221)
T ss_pred eEEEEecCCchHHHHHH-HHHhccchhhhheecc-ccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhH
Confidence 45555555555442111 1356677777777776 665443 333667889999999988886543 377888899
Q ss_pred ceecccCCCCccc
Q 003899 728 FLYLIDCPKLKYF 740 (788)
Q Consensus 728 ~L~l~~c~~l~~l 740 (788)
.|.+.+.|.+...
T Consensus 180 ~L~l~~l~~v~~~ 192 (221)
T KOG3864|consen 180 RLHLYDLPYVANL 192 (221)
T ss_pred HHHhcCchhhhch
Confidence 8888888766554
No 78
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=92.13 E-value=0.12 Score=30.24 Aligned_cols=19 Identities=37% Similarity=0.553 Sum_probs=11.1
Q ss_pred CCCceeeccCCcccccchh
Q 003899 142 KHLRFLNLSRTSIQILPES 160 (788)
Q Consensus 142 ~~L~~L~L~~~~i~~lp~~ 160 (788)
.+|++|+|++|.|..+|..
T Consensus 2 ~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00370 2 PNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCEEECCCCcCCcCCHH
Confidence 4556666666666666543
No 79
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=92.13 E-value=0.12 Score=30.24 Aligned_cols=19 Identities=37% Similarity=0.553 Sum_probs=11.1
Q ss_pred CCCceeeccCCcccccchh
Q 003899 142 KHLRFLNLSRTSIQILPES 160 (788)
Q Consensus 142 ~~L~~L~L~~~~i~~lp~~ 160 (788)
.+|++|+|++|.|..+|..
T Consensus 2 ~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00369 2 PNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCEEECCCCcCCcCCHH
Confidence 4556666666666666543
No 80
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.01 E-value=0.058 Score=49.44 Aligned_cols=57 Identities=19% Similarity=0.265 Sum_probs=32.9
Q ss_pred ccceEeccCCCCCCCCCCC---CCCCCccEEEEeccCCCCcccccccCCCCCccEEEEcC
Q 003899 631 SLLRLGIIGCPSLESFPED---GFPTNLQSLEVRDLKITKPLLEWGLNRFTSLRNLSIGG 687 (788)
Q Consensus 631 ~L~~L~l~~c~~l~~~~~~---~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~ 687 (788)
+++.|.+.+|..+.+.... ...++|+.|+|++|+.+++..-..+..+++|+.|.+.+
T Consensus 126 ~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~ 185 (221)
T KOG3864|consen 126 SIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYD 185 (221)
T ss_pred hhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHHhcC
Confidence 5566666666655443211 24467777777777776554434455666666666555
No 81
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=88.22 E-value=0.35 Score=28.28 Aligned_cols=19 Identities=32% Similarity=0.270 Sum_probs=11.1
Q ss_pred ccCcEEEccCccchhhchhh
Q 003899 165 YNLNTILLEDCYQLKKLCND 184 (788)
Q Consensus 165 ~~L~~L~L~~~~~l~~lp~~ 184 (788)
++|++|+|++| .+..+|.+
T Consensus 2 ~~L~~L~L~~N-~l~~lp~~ 20 (26)
T smart00370 2 PNLRELDLSNN-QLSSLPPG 20 (26)
T ss_pred CCCCEEECCCC-cCCcCCHH
Confidence 45666666666 55555554
No 82
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=88.22 E-value=0.35 Score=28.28 Aligned_cols=19 Identities=32% Similarity=0.270 Sum_probs=11.1
Q ss_pred ccCcEEEccCccchhhchhh
Q 003899 165 YNLNTILLEDCYQLKKLCND 184 (788)
Q Consensus 165 ~~L~~L~L~~~~~l~~lp~~ 184 (788)
++|++|+|++| .+..+|.+
T Consensus 2 ~~L~~L~L~~N-~l~~lp~~ 20 (26)
T smart00369 2 PNLRELDLSNN-QLSSLPPG 20 (26)
T ss_pred CCCCEEECCCC-cCCcCCHH
Confidence 45666666666 55555554
No 83
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=82.01 E-value=0.85 Score=26.65 Aligned_cols=14 Identities=29% Similarity=0.598 Sum_probs=6.2
Q ss_pred CcceEeecCChhHH
Q 003899 748 SLSRLSIHNCPLIE 761 (788)
Q Consensus 748 ~L~~L~i~~c~~l~ 761 (788)
+|++|++++|+.++
T Consensus 3 ~L~~L~l~~C~~it 16 (26)
T smart00367 3 NLRELDLSGCTNIT 16 (26)
T ss_pred CCCEeCCCCCCCcC
Confidence 34444444444433
No 84
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=74.73 E-value=1.9 Score=25.15 Aligned_cols=17 Identities=41% Similarity=0.620 Sum_probs=10.2
Q ss_pred CCceeeccCCcccccch
Q 003899 143 HLRFLNLSRTSIQILPE 159 (788)
Q Consensus 143 ~L~~L~L~~~~i~~lp~ 159 (788)
+|++|++++|+++.+|+
T Consensus 3 ~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 3 SLKELNVSNNQLTSLPE 19 (26)
T ss_pred ccceeecCCCccccCcc
Confidence 45566666666666654
No 85
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=74.53 E-value=2.3 Score=24.84 Aligned_cols=16 Identities=31% Similarity=0.470 Sum_probs=8.7
Q ss_pred CCCceeeccCCccccc
Q 003899 142 KHLRFLNLSRTSIQIL 157 (788)
Q Consensus 142 ~~L~~L~L~~~~i~~l 157 (788)
.+|++|+|++|.|+.+
T Consensus 2 ~~L~~L~L~~NkI~~I 17 (26)
T smart00365 2 TNLEELDLSQNKIKKI 17 (26)
T ss_pred CccCEEECCCCcccee
Confidence 4555566666655443
No 86
>PF14162 YozD: YozD-like protein
Probab=64.88 E-value=6.5 Score=26.76 Aligned_cols=21 Identities=24% Similarity=0.322 Sum_probs=18.6
Q ss_pred hhHHHHHHHHHHhCcCCcccC
Q 003899 2 EGLGREFVRELHSRSLFQQSS 22 (788)
Q Consensus 2 ed~g~~~~~eL~~r~ll~~~~ 22 (788)
|++|+=++.+|+.|+++....
T Consensus 11 EEIAefFy~eL~kRGyvP~e~ 31 (57)
T PF14162_consen 11 EEIAEFFYHELVKRGYVPTEE 31 (57)
T ss_pred HHHHHHHHHHHHHccCCCcHH
Confidence 899999999999999987643
No 87
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=61.37 E-value=6.6 Score=22.23 Aligned_cols=10 Identities=40% Similarity=0.488 Sum_probs=3.7
Q ss_pred cCcEEEccCc
Q 003899 166 NLNTILLEDC 175 (788)
Q Consensus 166 ~L~~L~L~~~ 175 (788)
+|++|+|++|
T Consensus 3 ~L~~L~l~~n 12 (24)
T PF13516_consen 3 NLETLDLSNN 12 (24)
T ss_dssp T-SEEE-TSS
T ss_pred CCCEEEccCC
Confidence 4444444444
No 88
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=54.41 E-value=9.3 Score=22.74 Aligned_cols=13 Identities=38% Similarity=0.506 Sum_probs=7.5
Q ss_pred CCceeeccCCccc
Q 003899 143 HLRFLNLSRTSIQ 155 (788)
Q Consensus 143 ~L~~L~L~~~~i~ 155 (788)
+|++|+|++|.|.
T Consensus 3 ~L~~LdL~~N~i~ 15 (28)
T smart00368 3 SLRELDLSNNKLG 15 (28)
T ss_pred ccCEEECCCCCCC
Confidence 4566666666554
No 89
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=42.81 E-value=12 Score=40.48 Aligned_cols=66 Identities=24% Similarity=0.180 Sum_probs=34.7
Q ss_pred CCCCeeEEEECCCCCC---CCCC-CCCCCCccEEEecCCCCceEeCcccccCCCCCCCCCcceEeccccccccc
Q 003899 324 SFSKLARLELCRCTST---SLPS-VGQLPFLMELDISGMDGVKSVGSEFYRRSCSVPFPSLETLSFSDMREWEE 393 (788)
Q Consensus 324 ~~~~L~~L~L~~~~~~---~l~~-l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~ 393 (788)
.++.+..+.+++|++. .+.. ....|+|+.|+|++|........+.. ......|++|.+.+.+-.+.
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~----K~k~l~Leel~l~GNPlc~t 285 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELD----KLKGLPLEELVLEGNPLCTT 285 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhh----hhcCCCHHHeeecCCccccc
Confidence 4666777777777763 3333 33467777777777722211111111 11255566666666544433
No 90
>PF05725 FNIP: FNIP Repeat; InterPro: IPR008615 This repeat is approximately 22 residues long and is only found in Dictyostelium discoideum (Slime mould). It appears to be related to IPR001611 from INTERPRO. The alignment consists of two tandem repeats. It is termed the FNIP repeat after the pattern of conserved residues.
Probab=33.46 E-value=56 Score=21.90 Aligned_cols=32 Identities=28% Similarity=0.230 Sum_probs=18.7
Q ss_pred CCCCceecccCCCCcccCCCCCcCCcceEeecC
Q 003899 724 TSLEFLYLIDCPKLKYFPEQGLPKSLSRLSIHN 756 (788)
Q Consensus 724 ~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~i~~ 756 (788)
++++.|.+.+. -=+.+..+.+|++|++|.+.+
T Consensus 12 ~~l~~L~~g~~-fn~~i~~~~lP~sl~~L~fg~ 43 (44)
T PF05725_consen 12 SSLKSLIFGSS-FNQPIEPGSLPNSLKSLSFGY 43 (44)
T ss_pred CCCeEEEECCc-cCccCCCCccCCCceEEEeeC
Confidence 45666666333 223344456777888887654
No 91
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=27.41 E-value=6.7 Score=42.77 Aligned_cols=15 Identities=20% Similarity=0.053 Sum_probs=6.9
Q ss_pred hCCCCCeeEEEccCC
Q 003899 114 LMNLPRLRVFSLHGY 128 (788)
Q Consensus 114 ~~~l~~Lr~L~L~~~ 128 (788)
+....++++++++.|
T Consensus 168 L~~~~~l~~l~l~~n 182 (478)
T KOG4308|consen 168 LEKNEHLTELDLSLN 182 (478)
T ss_pred HhcccchhHHHHHhc
Confidence 333444444444444
Done!