Query 003899
Match_columns 788
No_of_seqs 464 out of 3653
Neff 10.5
Searched_HMMs 29240
Date Mon Mar 25 07:41:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003899.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003899hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 6.8E-50 2.3E-54 465.8 30.4 634 88-782 50-766 (768)
2 3rgz_A Protein brassinosteroid 100.0 5.2E-44 1.8E-48 416.2 31.7 590 118-759 50-716 (768)
3 1ziw_A TOLL-like receptor 3; i 100.0 8.2E-40 2.8E-44 378.1 31.2 372 300-735 221-620 (680)
4 1ziw_A TOLL-like receptor 3; i 100.0 2.7E-37 9.2E-42 357.0 37.0 559 118-775 25-637 (680)
5 3vq2_A TLR4, TOLL-like recepto 100.0 2E-37 6.8E-42 353.2 27.2 261 450-758 284-556 (606)
6 3t6q_A CD180 antigen; protein- 100.0 9.7E-37 3.3E-41 347.6 29.3 513 119-772 34-571 (606)
7 3vq2_A TLR4, TOLL-like recepto 100.0 1.4E-34 5E-39 329.6 32.5 433 60-537 29-484 (606)
8 3t6q_A CD180 antigen; protein- 100.0 1.1E-34 3.8E-39 330.5 30.1 288 327-666 255-560 (606)
9 3j0a_A TOLL-like receptor 5; m 100.0 2.2E-33 7.5E-38 330.2 35.7 106 116-223 22-133 (844)
10 2z81_A CD282 antigen, TOLL-lik 100.0 3.1E-33 1.1E-37 314.7 26.9 462 118-712 26-509 (549)
11 3j0a_A TOLL-like receptor 5; m 100.0 2.3E-31 7.8E-36 313.1 35.9 502 86-641 22-558 (844)
12 2z63_A TOLL-like receptor 4, v 100.0 7.5E-32 2.6E-36 305.1 27.6 486 60-621 25-530 (570)
13 2z63_A TOLL-like receptor 4, v 100.0 2.6E-31 8.9E-36 300.7 30.4 127 88-223 28-159 (570)
14 4ecn_A Leucine-rich repeat pro 100.0 1.8E-31 6.2E-36 307.4 25.7 62 297-360 544-607 (876)
15 4g8a_A TOLL-like receptor 4; l 100.0 4.3E-31 1.5E-35 303.4 27.3 245 430-758 328-578 (635)
16 4eco_A Uncharacterized protein 100.0 1.9E-31 6.3E-36 303.1 22.6 354 151-621 192-599 (636)
17 2z81_A CD282 antigen, TOLL-lik 100.0 1E-30 3.5E-35 294.2 27.7 452 88-641 26-508 (549)
18 2z7x_B TOLL-like receptor 1, v 100.0 1.2E-29 4E-34 283.3 31.3 423 118-620 21-479 (520)
19 4ecn_A Leucine-rich repeat pro 100.0 4E-30 1.4E-34 296.2 25.3 204 110-358 440-683 (876)
20 4eco_A Uncharacterized protein 100.0 7.4E-31 2.5E-35 298.2 18.5 228 110-387 198-466 (636)
21 2z7x_B TOLL-like receptor 1, v 100.0 1.8E-29 6.3E-34 281.7 26.3 454 66-597 3-480 (520)
22 4g8a_A TOLL-like receptor 4; l 100.0 2E-28 6.7E-33 281.3 30.5 496 88-666 52-580 (635)
23 1jl5_A Outer protein YOPM; leu 100.0 3.4E-29 1.2E-33 271.6 20.5 334 302-758 92-427 (454)
24 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 3.4E-28 1.2E-32 273.6 28.4 335 118-537 52-414 (562)
25 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 3.6E-28 1.2E-32 273.3 26.7 452 65-622 33-510 (562)
26 1jl5_A Outer protein YOPM; leu 100.0 8.1E-28 2.8E-32 260.8 22.2 400 116-641 9-427 (454)
27 1o6v_A Internalin A; bacterial 99.9 2.1E-26 7E-31 252.5 24.4 343 86-537 44-386 (466)
28 3bz5_A Internalin-J, INLJ; leu 99.9 9.7E-26 3.3E-30 244.7 23.1 127 587-742 266-392 (457)
29 3bz5_A Internalin-J, INLJ; leu 99.9 6E-26 2.1E-30 246.3 17.1 304 83-484 37-350 (457)
30 1o6v_A Internalin A; bacterial 99.9 1.9E-24 6.6E-29 236.8 28.7 343 117-621 45-387 (466)
31 3v47_A TOLL-like receptor 5B a 99.9 5.8E-25 2E-29 241.0 23.5 103 118-222 30-138 (455)
32 3o6n_A APL1; leucine-rich repe 99.9 1.3E-25 4.3E-30 240.5 16.5 304 85-484 42-350 (390)
33 4fmz_A Internalin; leucine ric 99.9 7.8E-25 2.7E-29 230.6 19.7 303 116-537 42-344 (347)
34 2id5_A Lingo-1, leucine rich r 99.9 9.5E-24 3.3E-28 232.5 23.4 291 118-537 32-331 (477)
35 3v47_A TOLL-like receptor 5B a 99.9 3.9E-24 1.3E-28 234.4 19.8 349 88-537 30-406 (455)
36 3oja_B Anopheles plasmodium-re 99.9 2.1E-24 7.3E-29 243.8 17.1 300 86-462 49-356 (597)
37 4fmz_A Internalin; leucine ric 99.9 5.1E-24 1.7E-28 224.3 15.2 300 85-462 41-344 (347)
38 2id5_A Lingo-1, leucine rich r 99.9 4.5E-23 1.5E-27 227.2 21.5 221 87-387 31-257 (477)
39 3o6n_A APL1; leucine-rich repe 99.9 7.1E-23 2.4E-27 219.1 20.1 303 116-537 43-350 (390)
40 3oja_B Anopheles plasmodium-re 99.9 4E-22 1.4E-26 225.2 19.7 303 116-537 49-356 (597)
41 4fcg_A Uncharacterized protein 99.9 4E-22 1.4E-26 206.8 17.9 231 115-417 78-310 (328)
42 1xku_A Decorin; proteoglycan, 99.9 6.1E-21 2.1E-25 199.0 20.9 289 119-483 32-329 (330)
43 2ft3_A Biglycan; proteoglycan, 99.9 4.8E-21 1.6E-25 199.9 18.8 289 119-484 34-331 (332)
44 4fcg_A Uncharacterized protein 99.9 8E-21 2.7E-25 197.0 17.3 216 140-427 79-295 (328)
45 1ogq_A PGIP-2, polygalacturona 99.8 3.8E-22 1.3E-26 205.8 5.5 249 88-392 50-305 (313)
46 1ogq_A PGIP-2, polygalacturona 99.8 1E-21 3.6E-26 202.5 7.9 101 119-220 51-156 (313)
47 1xku_A Decorin; proteoglycan, 99.8 1.5E-20 5.3E-25 195.9 16.0 244 118-387 52-302 (330)
48 2ft3_A Biglycan; proteoglycan, 99.8 1.1E-20 3.8E-25 197.1 14.3 102 118-224 54-158 (332)
49 3ogk_B Coronatine-insensitive 99.8 5.2E-21 1.8E-25 217.1 7.4 207 113-359 68-304 (592)
50 3g06_A SSPH2 (leucine-rich rep 99.8 5.8E-19 2E-23 196.9 21.3 90 118-221 40-129 (622)
51 3ogk_B Coronatine-insensitive 99.8 8.3E-21 2.8E-25 215.5 2.3 369 113-537 107-524 (592)
52 2z80_A TOLL-like receptor 2, v 99.8 3.7E-19 1.3E-23 187.3 14.2 198 118-358 52-259 (353)
53 3g06_A SSPH2 (leucine-rich rep 99.8 8.4E-18 2.9E-22 187.6 23.7 256 142-537 40-295 (622)
54 2z80_A TOLL-like receptor 2, v 99.8 6.8E-19 2.3E-23 185.3 14.0 200 114-359 27-233 (353)
55 3o53_A Protein LRIM1, AGAP0063 99.8 8.4E-20 2.9E-24 188.8 5.8 251 111-427 27-281 (317)
56 2z66_A Variable lymphocyte rec 99.8 6E-19 2.1E-23 181.8 12.1 101 118-221 28-134 (306)
57 1z7x_W Ribonuclease inhibitor; 99.8 3.9E-21 1.3E-25 211.0 -5.1 105 88-200 3-124 (461)
58 2z66_A Variable lymphocyte rec 99.8 9.3E-19 3.2E-23 180.4 12.7 124 88-220 28-157 (306)
59 2p1m_B Transport inhibitor res 99.8 8.3E-21 2.8E-25 215.6 -3.5 225 296-537 260-517 (594)
60 3zyj_A Leucine-rich repeat-con 99.8 9.2E-18 3.2E-22 182.2 20.5 99 118-219 64-166 (440)
61 3zyi_A Leucine-rich repeat-con 99.8 1.1E-17 3.6E-22 182.4 20.4 108 324-462 194-301 (452)
62 3zyi_A Leucine-rich repeat-con 99.8 2.7E-18 9.2E-23 187.2 13.5 218 119-388 76-300 (452)
63 3zyj_A Leucine-rich repeat-con 99.8 3.8E-18 1.3E-22 185.3 13.9 220 88-359 64-290 (440)
64 1z7x_W Ribonuclease inhibitor; 99.7 1.9E-20 6.7E-25 205.4 -4.7 381 62-485 2-439 (461)
65 3o53_A Protein LRIM1, AGAP0063 99.7 7E-19 2.4E-23 181.9 4.1 248 84-395 30-279 (317)
66 2p1m_B Transport inhibitor res 99.7 1.7E-19 5.8E-24 204.8 -1.7 63 297-359 62-141 (594)
67 1ozn_A Reticulon 4 receptor; N 99.7 9.6E-17 3.3E-21 163.3 16.5 101 118-220 32-136 (285)
68 1ozn_A Reticulon 4 receptor; N 99.7 3.3E-17 1.1E-21 166.8 12.8 124 87-220 31-160 (285)
69 1wwl_A Monocyte differentiatio 99.7 1.2E-17 4.3E-22 172.0 8.8 201 116-359 93-307 (312)
70 3oja_A Leucine-rich immune mol 99.7 5.4E-17 1.9E-21 177.6 12.7 100 114-223 30-130 (487)
71 1p9a_G Platelet glycoprotein I 99.7 1.1E-16 3.8E-21 162.5 13.6 103 114-222 6-109 (290)
72 1h6u_A Internalin H; cell adhe 99.7 6.4E-17 2.2E-21 166.1 11.8 190 116-359 39-228 (308)
73 2xwt_C Thyrotropin receptor; s 99.7 4.8E-16 1.6E-20 153.5 17.3 199 498-760 31-239 (239)
74 2z62_A TOLL-like receptor 4, v 99.7 2.4E-16 8.3E-21 159.5 14.1 197 119-359 29-235 (276)
75 4ay9_X Follicle-stimulating ho 99.7 1.5E-15 5.1E-20 159.2 18.9 216 498-733 30-255 (350)
76 2o6q_A Variable lymphocyte rec 99.7 5.2E-16 1.8E-20 156.3 14.7 61 298-359 154-216 (270)
77 3rfs_A Internalin B, repeat mo 99.7 4.2E-16 1.5E-20 157.0 12.5 100 116-220 39-140 (272)
78 2xwt_C Thyrotropin receptor; s 99.6 3E-16 1E-20 155.0 10.5 94 119-216 32-130 (239)
79 3oja_A Leucine-rich immune mol 99.6 1.3E-16 4.4E-21 174.6 8.5 122 86-223 32-154 (487)
80 1wwl_A Monocyte differentiatio 99.6 2.2E-17 7.7E-22 170.1 1.8 101 120-223 65-183 (312)
81 4ay9_X Follicle-stimulating ho 99.6 1.9E-15 6.3E-20 158.4 14.9 101 121-225 12-116 (350)
82 1p9a_G Platelet glycoprotein I 99.6 4.8E-16 1.6E-20 157.8 9.6 198 84-359 6-206 (290)
83 2z62_A TOLL-like receptor 4, v 99.6 2.3E-15 7.7E-20 152.3 13.1 97 122-223 11-110 (276)
84 4glp_A Monocyte differentiatio 99.6 2.5E-15 8.6E-20 154.6 11.4 226 86-359 62-305 (310)
85 2ast_B S-phase kinase-associat 99.6 1.3E-16 4.6E-21 166.7 1.3 103 118-221 70-176 (336)
86 1h6u_A Internalin H; cell adhe 99.6 1.4E-15 4.7E-20 156.1 8.4 196 85-342 38-233 (308)
87 3rfs_A Internalin B, repeat mo 99.6 1.4E-15 4.6E-20 153.3 7.4 128 83-222 36-166 (272)
88 2o6q_A Variable lymphocyte rec 99.6 1.2E-14 4.1E-19 146.2 14.1 193 119-387 17-214 (270)
89 1h6t_A Internalin B; cell adhe 99.6 4.3E-15 1.5E-19 151.0 10.2 169 115-359 43-211 (291)
90 3m19_A Variable lymphocyte rec 99.5 3.6E-14 1.2E-18 141.0 14.1 170 119-359 15-190 (251)
91 2ca6_A RAN GTPase-activating p 99.5 2.6E-16 9E-21 167.7 -1.7 131 83-222 27-196 (386)
92 2ast_B S-phase kinase-associat 99.5 4.7E-15 1.6E-19 154.9 2.5 199 451-687 70-281 (336)
93 3m19_A Variable lymphocyte rec 99.5 6.3E-14 2.2E-18 139.3 10.2 154 61-224 33-190 (251)
94 1m9s_A Internalin B; cell inva 99.5 4.1E-14 1.4E-18 157.7 9.4 168 116-359 41-208 (605)
95 2ca6_A RAN GTPase-activating p 99.5 5.2E-15 1.8E-19 157.6 1.6 239 112-360 26-315 (386)
96 4ezg_A Putative uncharacterize 99.5 1.8E-13 6.1E-18 130.3 11.3 150 61-225 42-193 (197)
97 1xeu_A Internalin C; cellular 99.5 3.4E-14 1.2E-18 141.8 6.2 166 117-359 18-183 (263)
98 3goz_A Leucine-rich repeat-con 99.5 5.2E-15 1.8E-19 155.9 -0.1 115 106-223 10-148 (362)
99 3cvr_A Invasion plasmid antige 99.5 1.5E-13 5.2E-18 151.2 11.4 180 119-365 60-247 (571)
100 1h6t_A Internalin B; cell adhe 99.4 1.5E-13 5.2E-18 139.5 10.0 125 84-223 42-166 (291)
101 4ezg_A Putative uncharacterize 99.4 1.4E-13 4.9E-18 131.0 8.7 36 324-359 157-192 (197)
102 2je0_A Acidic leucine-rich nuc 99.4 1.8E-13 6.2E-18 123.8 6.7 126 86-221 15-148 (149)
103 2ell_A Acidic leucine-rich nuc 99.4 2.3E-13 7.7E-18 126.0 7.2 129 87-225 23-159 (168)
104 3e6j_A Variable lymphocyte rec 99.4 3.2E-13 1.1E-17 131.8 8.6 130 87-225 39-171 (229)
105 4glp_A Monocyte differentiatio 99.4 9.6E-13 3.3E-17 135.3 10.8 221 499-758 65-305 (310)
106 1m9s_A Internalin B; cell inva 99.4 3E-13 1E-17 150.7 7.2 125 84-223 39-163 (605)
107 4b8c_D Glucose-repressible alc 99.4 8E-13 2.7E-17 151.4 10.6 157 62-225 172-328 (727)
108 3e6j_A Variable lymphocyte rec 99.4 3.3E-12 1.1E-16 124.6 13.4 95 121-220 22-119 (229)
109 3goz_A Leucine-rich repeat-con 99.4 9E-14 3.1E-18 146.4 1.5 203 122-359 2-236 (362)
110 1xeu_A Internalin C; cellular 99.4 1.1E-12 3.6E-17 131.0 9.2 102 114-223 37-138 (263)
111 2xot_A Amphoterin-induced prot 99.4 7.5E-13 2.6E-17 139.1 8.5 96 121-221 21-120 (361)
112 2v9t_B SLIT homolog 2 protein 99.4 2.1E-12 7.3E-17 125.0 10.7 95 121-220 14-111 (220)
113 1a9n_A U2A', U2A'; complex (nu 99.3 1E-12 3.5E-17 122.5 7.8 132 82-224 13-151 (176)
114 2v9t_B SLIT homolog 2 protein 99.3 1.5E-12 5E-17 126.2 8.2 128 88-225 32-164 (220)
115 2ell_A Acidic leucine-rich nuc 99.3 2E-12 6.7E-17 119.6 8.3 138 60-208 21-165 (168)
116 2v70_A SLIT-2, SLIT homolog 2 99.3 1.3E-12 4.5E-17 126.4 6.5 130 88-226 32-166 (220)
117 2o6s_A Variable lymphocyte rec 99.3 3.5E-12 1.2E-16 122.6 8.9 128 87-224 27-159 (208)
118 2v70_A SLIT-2, SLIT homolog 2 99.3 3.8E-12 1.3E-16 123.2 8.8 132 60-200 29-164 (220)
119 2o6s_A Variable lymphocyte rec 99.3 2.8E-12 9.6E-17 123.3 7.7 149 60-225 25-177 (208)
120 2je0_A Acidic leucine-rich nuc 99.3 2.3E-12 8E-17 116.4 5.8 108 114-225 13-125 (149)
121 3cvr_A Invasion plasmid antige 99.3 3.9E-11 1.3E-15 132.1 16.0 142 584-741 99-247 (571)
122 2xot_A Amphoterin-induced prot 99.3 2.7E-12 9.4E-17 134.8 6.5 110 113-225 58-175 (361)
123 2wfh_A SLIT homolog 2 protein 99.2 1.6E-11 5.6E-16 115.8 8.8 104 118-224 31-137 (193)
124 1a9n_A U2A', U2A'; complex (nu 99.2 1E-11 3.5E-16 115.6 6.2 107 113-224 14-124 (176)
125 1w8a_A SLIT protein; signaling 99.2 1.3E-11 4.4E-16 116.7 6.3 106 119-226 30-139 (192)
126 1dce_A Protein (RAB geranylger 99.2 1.8E-11 6.1E-16 135.7 8.0 104 119-227 442-547 (567)
127 1dce_A Protein (RAB geranylger 99.2 3E-11 1E-15 133.9 8.2 134 108-247 399-541 (567)
128 2wfh_A SLIT homolog 2 protein 99.2 8.2E-11 2.8E-15 111.0 9.5 100 121-225 13-114 (193)
129 2r9u_A Variable lymphocyte rec 99.1 8.8E-11 3E-15 108.6 8.3 99 121-224 15-116 (174)
130 3g39_A Variable lymphocyte rec 99.1 9.9E-11 3.4E-15 108.0 8.2 101 120-225 11-114 (170)
131 1w8a_A SLIT protein; signaling 99.1 1.4E-10 4.7E-15 109.5 8.8 100 121-225 11-114 (192)
132 2o6r_A Variable lymphocyte rec 99.1 1.8E-10 6E-15 107.4 9.1 104 118-224 28-135 (177)
133 1ds9_A Outer arm dynein; leuci 99.1 3.1E-12 1.1E-16 121.7 -3.0 110 109-223 39-150 (198)
134 4b8c_D Glucose-repressible alc 99.1 2.4E-11 8.3E-16 139.1 3.3 122 82-212 218-339 (727)
135 3sb4_A Hypothetical leucine ri 99.1 7.3E-10 2.5E-14 114.7 13.8 120 87-220 24-155 (329)
136 1ds9_A Outer arm dynein; leuci 99.0 3.2E-12 1.1E-16 121.6 -5.8 127 83-220 43-181 (198)
137 3sb4_A Hypothetical leucine ri 99.0 4.7E-10 1.6E-14 116.1 9.7 125 411-545 5-142 (329)
138 2r9u_A Variable lymphocyte rec 99.0 4E-10 1.4E-14 104.2 7.1 92 118-212 33-127 (174)
139 2o6r_A Variable lymphocyte rec 99.0 5.1E-10 1.8E-14 104.2 6.9 105 87-200 27-135 (177)
140 4fdw_A Leucine rich hypothetic 98.9 1.4E-07 4.8E-12 99.6 23.6 245 474-777 136-396 (401)
141 3g39_A Variable lymphocyte rec 98.9 1.5E-09 5.1E-14 100.0 7.1 87 118-207 30-119 (170)
142 4fdw_A Leucine rich hypothetic 98.8 1.9E-07 6.5E-12 98.6 20.8 166 580-757 175-355 (401)
143 4fs7_A Uncharacterized protein 98.8 5.4E-07 1.8E-11 95.6 22.6 62 667-733 309-375 (394)
144 2ifg_A High affinity nerve gro 98.7 1.3E-08 4.5E-13 106.2 7.6 88 110-200 24-114 (347)
145 4fs7_A Uncharacterized protein 98.7 1.1E-06 3.7E-11 93.3 20.5 77 446-530 315-392 (394)
146 2ifg_A High affinity nerve gro 98.6 2.5E-08 8.6E-13 104.1 6.9 103 122-227 12-117 (347)
147 3un9_A NLR family member X1; l 98.4 8.4E-08 2.9E-12 100.2 1.9 155 62-225 71-251 (372)
148 3un9_A NLR family member X1; l 98.3 6.7E-07 2.3E-11 93.4 5.8 133 63-204 101-253 (372)
149 4gt6_A Cell surface protein; l 98.1 0.00068 2.3E-08 71.5 24.9 71 654-732 312-386 (394)
150 3e4g_A ATP synthase subunit S, 98.1 2.3E-06 8E-11 77.1 4.2 84 654-739 62-154 (176)
151 1io0_A Tropomodulin; LRR prote 98.0 5.9E-06 2E-10 76.8 5.8 86 113-200 60-162 (185)
152 3rw6_A Nuclear RNA export fact 97.9 1E-05 3.6E-10 78.9 6.7 59 140-200 168-231 (267)
153 4h09_A Hypothetical leucine ri 97.9 0.0033 1.1E-07 65.8 26.1 69 668-742 276-349 (379)
154 1io0_A Tropomodulin; LRR prote 97.9 2E-05 6.9E-10 73.1 7.8 115 108-224 26-162 (185)
155 4gt6_A Cell surface protein; l 97.9 0.00029 1E-08 74.3 17.3 125 82-219 57-188 (394)
156 3rw6_A Nuclear RNA export fact 97.9 3.4E-06 1.2E-10 82.4 2.0 82 113-196 165-258 (267)
157 3e4g_A ATP synthase subunit S, 97.8 9.8E-06 3.4E-10 73.1 4.2 70 470-542 82-155 (176)
158 2ra8_A Uncharacterized protein 97.8 2.1E-05 7.3E-10 81.2 6.9 52 406-459 170-227 (362)
159 2ra8_A Uncharacterized protein 97.7 0.00011 3.8E-09 75.8 9.9 151 63-224 139-318 (362)
160 4h09_A Hypothetical leucine ri 97.6 0.003 1E-07 66.2 19.5 59 447-507 282-342 (379)
161 2a5y_B CED-4; apoptosis; HET: 97.1 0.00015 5.2E-09 80.1 2.3 46 1-47 427-473 (549)
162 3rfe_A Platelet glycoprotein I 95.8 0.012 4.2E-07 50.3 5.7 51 122-175 12-65 (130)
163 3rfe_A Platelet glycoprotein I 94.9 0.028 9.7E-07 48.0 4.9 51 682-735 12-66 (130)
164 1pgv_A TMD-1, tropomodulin TMD 93.6 0.17 5.9E-06 46.3 7.6 86 113-199 36-136 (197)
165 3sfz_A APAF-1, apoptotic pepti 92.1 0.08 2.7E-06 65.0 4.1 44 2-45 408-452 (1249)
166 1pgv_A TMD-1, tropomodulin TMD 90.9 0.36 1.2E-05 44.1 6.1 114 85-200 38-168 (197)
167 1vt4_I APAF-1 related killer D 85.8 0.42 1.4E-05 55.2 3.5 36 3-39 402-437 (1221)
168 1z6t_A APAF-1, apoptotic prote 83.0 0.6 2E-05 51.8 3.3 40 3-42 409-449 (591)
169 2lz0_A Uncharacterized protein 38.5 35 0.0012 26.9 4.3 44 667-734 9-53 (100)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=6.8e-50 Score=465.75 Aligned_cols=634 Identities=18% Similarity=0.086 Sum_probs=454.8
Q ss_pred CceeEEEeccCCccccchhhhh---HHHHhCCCCCeeEEEccCCcCcccccccccCCCCCceeeccCCccc-ccch--hh
Q 003899 88 EHLRTFLPVNLSNYRINYLAWS---VLQMLMNLPRLRVFSLHGYSNIIELPNEIENLKHLRFLNLSRTSIQ-ILPE--SI 161 (788)
Q Consensus 88 ~~Lr~L~~~~~~~~~~~~~~~~---~~~~~~~l~~Lr~L~L~~~~~l~~lp~~~~~l~~L~~L~L~~~~i~-~lp~--~i 161 (788)
.+++.|.+.+.. +.+. +++.+.++++|+.++++.+ .+..+|..|+++++|++|+|++|.+. .+|. .+
T Consensus 50 ~~v~~L~L~~~~------l~g~~~~l~~~l~~L~~L~~l~~~~~-~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l 122 (768)
T 3rgz_A 50 DKVTSIDLSSKP------LNVGFSAVSSSLLSLTGLESLFLSNS-HINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSL 122 (768)
T ss_dssp TEEEEEECTTSC------CCEEHHHHHHHTTTCTTCCEEECTTS-CEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGG
T ss_pred CcEEEEECCCCC------cCCccCccChhHhccCcccccCCcCC-CcCCCchhhccCCCCCEEECCCCcCCCcCCChHHH
Confidence 355666555432 2233 6678888889999998888 67667788888999999999988887 4676 88
Q ss_pred hccccCcEEEccCccchhhchhhh-hcccCCceEecCCCcCcccCCcc---CcCCCCcceeCceEeCCCCCCCccccccc
Q 003899 162 NSLYNLNTILLEDCYQLKKLCNDM-GNLKKLRHLKSSNVDSLEEMPKG---FGKLTCLLTLGTFVVGKDGGSGLRELKSL 237 (788)
Q Consensus 162 ~~L~~L~~L~L~~~~~l~~lp~~i-~~L~~L~~L~l~~~~~l~~~p~~---i~~l~~L~~L~~~~~~~~~~~~~~~l~~L 237 (788)
+++++|++|++++|.....+|..+ .++++|++|++++|......|.. ++++++|++|++..+...+.... ..+
T Consensus 123 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~---~~l 199 (768)
T 3rgz_A 123 GSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDV---SRC 199 (768)
T ss_dssp GGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBC---TTC
T ss_pred hCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCCc---ccC
Confidence 889999999998885445566554 78888999999988843444444 78888888888866654433222 344
Q ss_pred ccCCceeEEeccCCCCCchhhhhcccCCCcCCceEEEEeecCcccCccchhhhhhhcccCccccccceEEEEeeCCCCC-
Q 003899 238 THLQGTLQISKLENVKDVGDACEAQLNSKENLQALLLKWSTRDVQNLDQCEFETHVLSVLKPHQDVQELTITGYGGTKF- 316 (788)
Q Consensus 238 ~~L~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~- 316 (788)
..|+ .+.+....... ... .+..+++|+.|+++++.. ....+..+..+++|+.|++++|.....
T Consensus 200 ~~L~-~L~Ls~n~l~~----~~~-~l~~l~~L~~L~Ls~n~l----------~~~~~~~l~~l~~L~~L~Ls~n~l~~~~ 263 (768)
T 3rgz_A 200 VNLE-FLDVSSNNFST----GIP-FLGDCSALQHLDISGNKL----------SGDFSRAISTCTELKLLNISSNQFVGPI 263 (768)
T ss_dssp TTCC-EEECCSSCCCS----CCC-BCTTCCSCCEEECCSSCC----------CSCHHHHTTTCSSCCEEECCSSCCEESC
T ss_pred CcCC-EEECcCCcCCC----CCc-ccccCCCCCEEECcCCcC----------CCcccHHHhcCCCCCEEECCCCcccCcc
Confidence 4444 44443322211 111 267788999999988776 344566788889999999998876533
Q ss_pred CcccCCCCCCCeeEEEECCCCC-CCCCC-CCC-CCCccEEEecCCCCceEeCcccccCCCCCCCCCcceEeccccccccc
Q 003899 317 PIWLGDSSFSKLARLELCRCTS-TSLPS-VGQ-LPFLMELDISGMDGVKSVGSEFYRRSCSVPFPSLETLSFSDMREWEE 393 (788)
Q Consensus 317 p~~~~~~~~~~L~~L~L~~~~~-~~l~~-l~~-l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~ 393 (788)
|.+ .+++|+.|++++|.+ ..+|. +.. +++|++|++++|.....++..+.. +++|++|+++++.-...
T Consensus 264 ~~~----~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~------l~~L~~L~L~~n~l~~~ 333 (768)
T 3rgz_A 264 PPL----PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGS------CSLLESLALSSNNFSGE 333 (768)
T ss_dssp CCC----CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGG------CTTCCEEECCSSEEEEE
T ss_pred Ccc----ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhc------CCCccEEECCCCcccCc
Confidence 332 588999999999988 57775 555 499999999998654444444432 89999999998644334
Q ss_pred ccccCCCCcccccCCcccEEeeecCcccccCCCCCC---C-CccEEEEeccCCc---ccccCC--CCCccEEEeccCCcc
Q 003899 394 WIPCGAGQEVDEVFPKLRKLSLFNCHKLQGKLPKRL---L-LLETLVIKSCQQL---LVTIQC--LPALSELQIDGCERV 464 (788)
Q Consensus 394 ~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~lp~~l---~-~L~~L~l~~c~~l---~~~~~~--~~~L~~L~l~~~~~~ 464 (788)
++. .....+++|++|++++| .+.+.+|..+ + +|+.|++++|... ...+.. +++|++|++++|...
T Consensus 334 ip~-----~~l~~l~~L~~L~Ls~n-~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~ 407 (768)
T 3rgz_A 334 LPM-----DTLLKMRGLKVLDLSFN-EFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFT 407 (768)
T ss_dssp CCH-----HHHTTCTTCCEEECCSS-EEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEE
T ss_pred CCH-----HHHhcCCCCCEEeCcCC-ccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccc
Confidence 443 02466899999999998 6666788543 3 8999999987543 222333 678999999999843
Q ss_pred --eecCCcCCCCccEEeccccccceeeccccccCCCCccEEEEecCcccchhhhcccccccCCCCCCeEEcccCCCcccc
Q 003899 465 --VFSSPIDLSSLKSVHLAYVANEVVLAGLFEQGLPKLENLVIVEVREQAYLWQSETRLLQDIRSLNRLHISRCPRLLSL 542 (788)
Q Consensus 465 --~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~ 542 (788)
....+..+++|+.|++++|.....+|.. +..+++|+.|++++|.....+ +..+..+++|++|++++|.....+
T Consensus 408 ~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~-l~~l~~L~~L~L~~n~l~~~~----p~~~~~l~~L~~L~L~~N~l~~~~ 482 (768)
T 3rgz_A 408 GKIPPTLSNCSELVSLHLSFNYLSGTIPSS-LGSLSKLRDLKLWLNMLEGEI----PQELMYVKTLETLILDFNDLTGEI 482 (768)
T ss_dssp EECCGGGGGCTTCCEEECCSSEEESCCCGG-GGGCTTCCEEECCSSCCCSCC----CGGGGGCTTCCEEECCSSCCCSCC
T ss_pred cccCHHHhcCCCCCEEECcCCcccCcccHH-HhcCCCCCEEECCCCcccCcC----CHHHcCCCCceEEEecCCcccCcC
Confidence 3456778999999999998655455554 578899999999999888776 888899999999999998654444
Q ss_pred ccCccccccCCCCcccccceEE-EEEecCccCcccccccccCCCCcceEEEecCCCCcccCCCCCCCCcccEEEeccccc
Q 003899 543 VTDEEHDQQQPESPYRLRFLEL-KIFIYDLENLQSLPAGLHNLRHLQKIWISKCPNLESFPEEGLPSAKLTELMIWRCEN 621 (788)
Q Consensus 543 ~~~~~~~~~~~~~~~~l~~L~L-~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~c~~ 621 (788)
|.. +..+++ | .+++.+|.....+|..+..+++|++|++++|.....+|..+..+++|+.|++++|+.
T Consensus 483 p~~---l~~l~~---------L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l 550 (768)
T 3rgz_A 483 PSG---LSNCTN---------LNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLF 550 (768)
T ss_dssp CGG---GGGCTT---------CCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEE
T ss_pred CHH---HhcCCC---------CCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCcc
Confidence 432 224455 7 999999887778899999999999999999876668888888899999999999987
Q ss_pred ccccccccCc---cceEeccCCC--------CC--------------------------------------CCCCC-CCC
Q 003899 622 LKALPNSMSS---LLRLGIIGCP--------SL--------------------------------------ESFPE-DGF 651 (788)
Q Consensus 622 l~~l~~~~~~---L~~L~l~~c~--------~l--------------------------------------~~~~~-~~~ 651 (788)
...+|..+.. +..+.+.... .. ..+|. ...
T Consensus 551 ~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~ 630 (768)
T 3rgz_A 551 NGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDN 630 (768)
T ss_dssp ESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSS
T ss_pred CCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhc
Confidence 7777765432 1111111100 00 00010 112
Q ss_pred CCCccEEEEeccCCCCcccccccCCCCCccEEEEcCCCCCcccCCC---CCCCCCeEecCCCCCcccchhhcCCCCCCCc
Q 003899 652 PTNLQSLEVRDLKITKPLLEWGLNRFTSLRNLSIGGGYPDLLSSPP---FPASLTELWISDMPDLECLSSISENLTSLEF 728 (788)
Q Consensus 652 ~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~---~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~ 728 (788)
.++|+.|++++|...+.++. .++++++|+.|++++ +.-...+|. .+++|+.|+|++|.--..+|..+..+++|++
T Consensus 631 l~~L~~LdLs~N~l~g~ip~-~l~~l~~L~~L~Ls~-N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~ 708 (768)
T 3rgz_A 631 NGSMMFLDMSYNMLSGYIPK-EIGSMPYLFILNLGH-NDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTE 708 (768)
T ss_dssp SBCCCEEECCSSCCBSCCCG-GGGGCTTCCEEECCS-SCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSE
T ss_pred cccccEEECcCCcccccCCH-HHhccccCCEEeCcC-CccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCE
Confidence 36899999999887766664 689999999999999 555557887 7899999999996555589999999999999
Q ss_pred eecccCCCCcccCCCCCcCCcceEeecCChhHH----HhhcCCCCcccCcccccceEE
Q 003899 729 LYLIDCPKLKYFPEQGLPKSLSRLSIHNCPLIE----KRCRKDEGKYWPMISHIPHFN 782 (788)
Q Consensus 729 L~l~~c~~l~~l~~~~~~~~L~~L~i~~c~~l~----~~~~~~~~~~~~~~~~~~~~~ 782 (788)
|++++|+-...+|+.+.+.++....+.|||.+- ..|....+.+|++|+|+++.+
T Consensus 709 L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~~l~~C~~~~~~~~~~~~~~~~~~ 766 (768)
T 3rgz_A 709 IDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLPRCDPSNADGYAHHQRSHHHH 766 (768)
T ss_dssp EECCSSEEEEECCSSSSGGGSCGGGGCSCTEEESTTSCCCCSCC--------------
T ss_pred EECcCCcccccCCCchhhccCCHHHhcCCchhcCCCCcCCCCCccCCCCCCCCccccC
Confidence 999999777889988887888888888887542 279999999999999998864
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=5.2e-44 Score=416.22 Aligned_cols=590 Identities=16% Similarity=0.088 Sum_probs=443.0
Q ss_pred CCeeEEEccCCcCccc----ccccccCCCCCceeeccCCcccccchhhhccccCcEEEccCccchhhchh--hhhcccCC
Q 003899 118 PRLRVFSLHGYSNIIE----LPNEIENLKHLRFLNLSRTSIQILPESINSLYNLNTILLEDCYQLKKLCN--DMGNLKKL 191 (788)
Q Consensus 118 ~~Lr~L~L~~~~~l~~----lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~--~i~~L~~L 191 (788)
.+++.|+|+++ .+.. +|.++.++++|++++++.+.+..+|.+++.+++|++|+|++|.....+|. .++++++|
T Consensus 50 ~~v~~L~L~~~-~l~g~~~~l~~~l~~L~~L~~l~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L 128 (768)
T 3rgz_A 50 DKVTSIDLSSK-PLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGL 128 (768)
T ss_dssp TEEEEEECTTS-CCCEEHHHHHHHTTTCTTCCEEECTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTC
T ss_pred CcEEEEECCCC-CcCCccCccChhHhccCcccccCCcCCCcCCCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCC
Confidence 57999999998 5543 78899999999999999999988889999999999999999955556887 89999999
Q ss_pred ceEecCCCcCcccCCccC-cCCCCcceeCceEeCCCCCC--CcccccccccCCceeEEeccCCCCCchhhhhcccCCCcC
Q 003899 192 RHLKSSNVDSLEEMPKGF-GKLTCLLTLGTFVVGKDGGS--GLRELKSLTHLQGTLQISKLENVKDVGDACEAQLNSKEN 268 (788)
Q Consensus 192 ~~L~l~~~~~l~~~p~~i-~~l~~L~~L~~~~~~~~~~~--~~~~l~~L~~L~~~l~~~~~~~~~~~~~~~~~~l~~~~~ 268 (788)
++|++++|.....+|..+ +++++|++|++..+...+.. .+..+.++..|+ .+.+....... ......+++
T Consensus 129 ~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~-~L~Ls~n~l~~------~~~~~~l~~ 201 (768)
T 3rgz_A 129 KFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELK-HLAISGNKISG------DVDVSRCVN 201 (768)
T ss_dssp CEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCC-EEECCSSEEES------CCBCTTCTT
T ss_pred CEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhccCCCCC-EEECCCCcccc------cCCcccCCc
Confidence 999999998555667665 89999999999776554321 111144555555 55443322111 111366789
Q ss_pred CceEEEEeecCcccCccchhhhhhhcccCccccccceEEEEeeCCC-CCCcccCCCCCCCeeEEEECCCCC-CCCCCCCC
Q 003899 269 LQALLLKWSTRDVQNLDQCEFETHVLSVLKPHQDVQELTITGYGGT-KFPIWLGDSSFSKLARLELCRCTS-TSLPSVGQ 346 (788)
Q Consensus 269 L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~~p~~~~~~~~~~L~~L~L~~~~~-~~l~~l~~ 346 (788)
|+.|+++++.. ....+. +..+++|++|+++++... .+|.++. .+++|+.|++++|.+ ..+|.. .
T Consensus 202 L~~L~Ls~n~l----------~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~--~l~~L~~L~Ls~n~l~~~~~~~-~ 267 (768)
T 3rgz_A 202 LEFLDVSSNNF----------STGIPF-LGDCSALQHLDISGNKLSGDFSRAIS--TCTELKLLNISSNQFVGPIPPL-P 267 (768)
T ss_dssp CCEEECCSSCC----------CSCCCB-CTTCCSCCEEECCSSCCCSCHHHHTT--TCSSCCEEECCSSCCEESCCCC-C
T ss_pred CCEEECcCCcC----------CCCCcc-cccCCCCCEEECcCCcCCCcccHHHh--cCCCCCEEECCCCcccCccCcc-c
Confidence 99999988775 222333 778899999999998876 3466665 789999999999998 566655 8
Q ss_pred CCCccEEEecCCCCceEeCcccccCCCCCCCCCcceEecccccccccccccCCCCcccccCCcccEEeeecCcccccCCC
Q 003899 347 LPFLMELDISGMDGVKSVGSEFYRRSCSVPFPSLETLSFSDMREWEEWIPCGAGQEVDEVFPKLRKLSLFNCHKLQGKLP 426 (788)
Q Consensus 347 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~lp 426 (788)
+++|++|++++|.....++..+... +++|++|+++++.--..++. ..+.+++|++|++++| .+.|.+|
T Consensus 268 l~~L~~L~L~~n~l~~~ip~~~~~~-----~~~L~~L~Ls~n~l~~~~p~------~~~~l~~L~~L~L~~n-~l~~~ip 335 (768)
T 3rgz_A 268 LKSLQYLSLAENKFTGEIPDFLSGA-----CDTLTGLDLSGNHFYGAVPP------FFGSCSLLESLALSSN-NFSGELP 335 (768)
T ss_dssp CTTCCEEECCSSEEEESCCCCSCTT-----CTTCSEEECCSSEEEECCCG------GGGGCTTCCEEECCSS-EEEEECC
T ss_pred cCCCCEEECcCCccCCccCHHHHhh-----cCcCCEEECcCCcCCCccch------HHhcCCCccEEECCCC-cccCcCC
Confidence 8999999999986554566555432 68999999998654334443 5567899999999998 5665777
Q ss_pred ----CCCCCccEEEEeccCC---cccccCCCC-CccEEEeccCCcc--eecCCcC--CCCccEEeccccccceeeccccc
Q 003899 427 ----KRLLLLETLVIKSCQQ---LLVTIQCLP-ALSELQIDGCERV--VFSSPID--LSSLKSVHLAYVANEVVLAGLFE 494 (788)
Q Consensus 427 ----~~l~~L~~L~l~~c~~---l~~~~~~~~-~L~~L~l~~~~~~--~~~~~~~--~~~L~~L~l~~~~~~~~~~~~~~ 494 (788)
..+++|++|++++|.. ++..+..++ +|++|++++|... .+..+.. +++|+.|++++|.....+|.. +
T Consensus 336 ~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~-l 414 (768)
T 3rgz_A 336 MDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPT-L 414 (768)
T ss_dssp HHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGG-G
T ss_pred HHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHH-H
Confidence 4678999999998853 233444455 8999999999833 2333433 788999999998766566655 5
Q ss_pred cCCCCccEEEEecCcccchhhhcccccccCCCCCCeEEcccCCCccccccCccccccCCCCcccccceEE-EEEecCccC
Q 003899 495 QGLPKLENLVIVEVREQAYLWQSETRLLQDIRSLNRLHISRCPRLLSLVTDEEHDQQQPESPYRLRFLEL-KIFIYDLEN 573 (788)
Q Consensus 495 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~l~~L~L-~L~l~~~~~ 573 (788)
..+++|+.|++++|...... +..+..+++|++|++++|.....+|.. +..+++ | .+.+.+|..
T Consensus 415 ~~l~~L~~L~Ls~N~l~~~~----p~~l~~l~~L~~L~L~~n~l~~~~p~~---~~~l~~---------L~~L~L~~N~l 478 (768)
T 3rgz_A 415 SNCSELVSLHLSFNYLSGTI----PSSLGSLSKLRDLKLWLNMLEGEIPQE---LMYVKT---------LETLILDFNDL 478 (768)
T ss_dssp GGCTTCCEEECCSSEEESCC----CGGGGGCTTCCEEECCSSCCCSCCCGG---GGGCTT---------CCEEECCSSCC
T ss_pred hcCCCCCEEECcCCcccCcc----cHHHhcCCCCCEEECCCCcccCcCCHH---HcCCCC---------ceEEEecCCcc
Confidence 78899999999999887776 888999999999999998754444432 223455 7 999999887
Q ss_pred cccccccccCCCCcceEEEecCCCCcccCCCCCCCCcccEEEecccccccccccccC---ccceEeccCCCCCCCCCCCC
Q 003899 574 LQSLPAGLHNLRHLQKIWISKCPNLESFPEEGLPSAKLTELMIWRCENLKALPNSMS---SLLRLGIIGCPSLESFPEDG 650 (788)
Q Consensus 574 l~~l~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~---~L~~L~l~~c~~l~~~~~~~ 650 (788)
...+|..+.++++|++|++++|.....+|..+..+++|++|++++|.....+|..+. +|++|++++|+-...+|...
T Consensus 479 ~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~ 558 (768)
T 3rgz_A 479 TGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAM 558 (768)
T ss_dssp CSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGG
T ss_pred cCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHH
Confidence 778899999999999999999876667888888899999999999988778876554 89999999886555566431
Q ss_pred CC----------CCccEEEEecc------------------------------------CCCCcccccccCCCCCccEEE
Q 003899 651 FP----------TNLQSLEVRDL------------------------------------KITKPLLEWGLNRFTSLRNLS 684 (788)
Q Consensus 651 ~~----------~~L~~L~l~~~------------------------------------~~~~~~~~~~~~~l~~L~~L~ 684 (788)
+. ...+..++.+. +......+..++++++|+.|+
T Consensus 559 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~Ld 638 (768)
T 3rgz_A 559 FKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLD 638 (768)
T ss_dssp GTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEE
T ss_pred hcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEE
Confidence 10 11112222111 111111233577899999999
Q ss_pred EcCCCCCcccCCC---CCCCCCeEecCCCCCcccchhhcCCCCCCCceecccCCCCcccCCC-CCcCCcceEeecCChh
Q 003899 685 IGGGYPDLLSSPP---FPASLTELWISDMPDLECLSSISENLTSLEFLYLIDCPKLKYFPEQ-GLPKSLSRLSIHNCPL 759 (788)
Q Consensus 685 l~~~~~~~~~~~~---~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~-~~~~~L~~L~i~~c~~ 759 (788)
+++ +.-...+|. .+++|+.|+|+++.--..+|..+..+++|+.|++++|.--..+|.. +.+++|++|++++|+-
T Consensus 639 Ls~-N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l 716 (768)
T 3rgz_A 639 MSY-NMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNL 716 (768)
T ss_dssp CCS-SCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEE
T ss_pred CcC-CcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcc
Confidence 999 555557776 7899999999996555589999999999999999999544577764 4568999999999963
No 3
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=8.2e-40 Score=378.06 Aligned_cols=372 Identities=15% Similarity=0.084 Sum_probs=186.4
Q ss_pred ccccceEEEEeeCCCCC-CcccCCCCCCCeeEEEECCCCCCCC-C-CCCCCCCccEEEecCCCCceEeCcccccCCCCCC
Q 003899 300 HQDVQELTITGYGGTKF-PIWLGDSSFSKLARLELCRCTSTSL-P-SVGQLPFLMELDISGMDGVKSVGSEFYRRSCSVP 376 (788)
Q Consensus 300 ~~~L~~L~l~~~~~~~~-p~~~~~~~~~~L~~L~L~~~~~~~l-~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 376 (788)
.++|+.|+++++..... |.++.....++|+.|++++|.+..+ | .++.+++|++|++++|......+..+ ..
T Consensus 221 ~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~----- 294 (680)
T 1ziw_A 221 NTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSL-HG----- 294 (680)
T ss_dssp TSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTT-TT-----
T ss_pred hccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhh-cC-----
Confidence 36788888888766544 4455421224599999999988333 3 38889999999999886444333333 22
Q ss_pred CCCcceEecccccccc-----cccccCCCCcccccCCcccEEeeecCcccccCCC---CCCCCccEEEEeccCCcccc--
Q 003899 377 FPSLETLSFSDMREWE-----EWIPCGAGQEVDEVFPKLRKLSLFNCHKLQGKLP---KRLLLLETLVIKSCQQLLVT-- 446 (788)
Q Consensus 377 ~~~L~~L~l~~~~~l~-----~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~lp---~~l~~L~~L~l~~c~~l~~~-- 446 (788)
+++|+.|++.++..-. .++... ......+++|++|++++| .+.+..+ ..+++|++|++++|..-...
T Consensus 295 l~~L~~L~L~~~~~~~~~~~~~lp~i~--~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~ 371 (680)
T 1ziw_A 295 LFNVRYLNLKRSFTKQSISLASLPKID--DFSFQWLKCLEHLNMEDN-DIPGIKSNMFTGLINLKYLSLSNSFTSLRTLT 371 (680)
T ss_dssp CTTCCEEECTTCBCCC------CCEEC--TTTTTTCTTCCEEECCSC-CBCCCCTTTTTTCTTCCEEECTTCBSCCCEEC
T ss_pred CCCccEEeccchhhhcccccccccccC--hhhcccCCCCCEEECCCC-ccCCCChhHhccccCCcEEECCCCchhhhhcc
Confidence 8889999987632111 111100 002345788888888887 5553333 23455555555554311000
Q ss_pred ---cC--CCCCccEEEeccCCcce--ecCCcCCCCccEEeccccccceeeccccccCCCCccEEEEecCcccchhhhccc
Q 003899 447 ---IQ--CLPALSELQIDGCERVV--FSSPIDLSSLKSVHLAYVANEVVLAGLFEQGLPKLENLVIVEVREQAYLWQSET 519 (788)
Q Consensus 447 ---~~--~~~~L~~L~l~~~~~~~--~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~ 519 (788)
+. ..++|+.|++++|.... ...+..+++|+.|++++|.....++...+..+++|++|++++|...... +
T Consensus 372 ~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~----~ 447 (680)
T 1ziw_A 372 NETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLT----R 447 (680)
T ss_dssp TTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECC----T
T ss_pred hhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeC----h
Confidence 10 01344445544444221 1223334444444444443333333333344444444444444433332 3
Q ss_pred ccccCCCCCCeEEcccCCCccccccCccccccCCCCcccccceEEEEEecCccCcccccccccCCCCcceEEEecCCCCc
Q 003899 520 RLLQDIRSLNRLHISRCPRLLSLVTDEEHDQQQPESPYRLRFLELKIFIYDLENLQSLPAGLHNLRHLQKIWISKCPNLE 599 (788)
Q Consensus 520 ~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~l~~L~L~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~ 599 (788)
..+..+++|++|++++|.. ..+..+|..+..+++|+.|++++| .++
T Consensus 448 ~~~~~~~~L~~L~l~~n~l---------------------------------~~~~~~p~~~~~l~~L~~L~Ls~N-~l~ 493 (680)
T 1ziw_A 448 NSFALVPSLQRLMLRRVAL---------------------------------KNVDSSPSPFQPLRNLTILDLSNN-NIA 493 (680)
T ss_dssp TTTTTCTTCCEEECTTSCC---------------------------------BCTTCSSCTTTTCTTCCEEECCSS-CCC
T ss_pred hhhhcCcccccchhccccc---------------------------------cccccCCcccccCCCCCEEECCCC-CCC
Confidence 3344444444444443320 112344556677778888888874 455
Q ss_pred ccCCC-CCCCCcccEEEeccccccccccc-ccCccceEeccCCCCCCCCCCCCCCCCccEEEEeccCCCCcccccccCCC
Q 003899 600 SFPEE-GLPSAKLTELMIWRCENLKALPN-SMSSLLRLGIIGCPSLESFPEDGFPTNLQSLEVRDLKITKPLLEWGLNRF 677 (788)
Q Consensus 600 ~~~~~-~~~~~~L~~L~l~~c~~l~~l~~-~~~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l 677 (788)
.++.. +..+++|++|++++|.. ..++. .++ .. ......-.++|+.|++++|... .++...|.++
T Consensus 494 ~i~~~~~~~l~~L~~L~Ls~N~l-~~~~~~~~~-----------~~-~~~~~~~l~~L~~L~L~~N~l~-~i~~~~~~~l 559 (680)
T 1ziw_A 494 NINDDMLEGLEKLEILDLQHNNL-ARLWKHANP-----------GG-PIYFLKGLSHLHILNLESNGFD-EIPVEVFKDL 559 (680)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCC-GGGGSTTST-----------TS-CCCTTTTCTTCCEEECCSSCCC-CCCTTTTTTC
T ss_pred cCChhhhccccccCEEeCCCCCc-cccchhhcc-----------CC-cchhhcCCCCCCEEECCCCCCC-CCCHHHcccc
Confidence 55543 34467777777776542 22211 000 00 0000011245666666554333 4444456666
Q ss_pred CCccEEEEcCCCCCcccCCC----CCCCCCeEecCCCCCcccchhh-cC-CCCCCCceecccCC
Q 003899 678 TSLRNLSIGGGYPDLLSSPP----FPASLTELWISDMPDLECLSSI-SE-NLTSLEFLYLIDCP 735 (788)
Q Consensus 678 ~~L~~L~l~~~~~~~~~~~~----~~~~L~~L~l~~~~~l~~l~~~-~~-~l~~L~~L~l~~c~ 735 (788)
++|++|++++ +.+..+|. .+++|+.|++++ +.++.++.. +. .+++|+.|++++||
T Consensus 560 ~~L~~L~Ls~--N~l~~l~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~~~~~L~~l~l~~N~ 620 (680)
T 1ziw_A 560 FELKIIDLGL--NNLNTLPASVFNNQVSLKSLNLQK-NLITSVEKKVFGPAFRNLTELDMRFNP 620 (680)
T ss_dssp TTCCEEECCS--SCCCCCCTTTTTTCTTCCEEECTT-SCCCBCCHHHHHHHHTTCSEEECTTCC
T ss_pred cCcceeECCC--CCCCcCCHhHhCCCCCCCEEECCC-CcCCccChhHhcccccccCEEEccCCC
Confidence 6666666665 34444443 234455555555 244444433 32 34555555555543
No 4
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=2.7e-37 Score=357.01 Aligned_cols=559 Identities=17% Similarity=0.134 Sum_probs=354.8
Q ss_pred CCeeEEEccCCcCccccc-ccccCCCCCceeeccCCccccc-chhhhccccCcEEEccCccchhhchhh-hhcccCCceE
Q 003899 118 PRLRVFSLHGYSNIIELP-NEIENLKHLRFLNLSRTSIQIL-PESINSLYNLNTILLEDCYQLKKLCND-MGNLKKLRHL 194 (788)
Q Consensus 118 ~~Lr~L~L~~~~~l~~lp-~~~~~l~~L~~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~~~l~~lp~~-i~~L~~L~~L 194 (788)
+++++|++++| .+..+| ..|+++++|++|+|++|.+..+ |..++++++|++|++++| .+..+|.. |+++++|++|
T Consensus 25 ~~l~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~l~~L~~L 102 (680)
T 1ziw_A 25 TNITVLNLTHN-QLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHN-ELSQLSDKTFAFCTNLTEL 102 (680)
T ss_dssp TTCSEEECCSS-CCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSS-CCCCCCTTTTTTCTTCSEE
T ss_pred CCCcEEECCCC-CCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCC-ccCccChhhhccCCCCCEE
Confidence 57777777777 777766 4577777777777777777766 566777777777777777 66677663 7777777777
Q ss_pred ecCCCcCcccCC-ccCcCCCCcceeCceEeCCCCCCCcccccccccCCceeEEeccCCCCCchhhhhcccCCCcCCceEE
Q 003899 195 KSSNVDSLEEMP-KGFGKLTCLLTLGTFVVGKDGGSGLRELKSLTHLQGTLQISKLENVKDVGDACEAQLNSKENLQALL 273 (788)
Q Consensus 195 ~l~~~~~l~~~p-~~i~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~ 273 (788)
++++|. +..+| ..++++++|++|++.++...+. ....+..+++|+.|+
T Consensus 103 ~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~------------------------------~~~~~~~l~~L~~L~ 151 (680)
T 1ziw_A 103 HLMSNS-IQKIKNNPFVKQKNLITLDLSHNGLSST------------------------------KLGTQVQLENLQELL 151 (680)
T ss_dssp ECCSSC-CCCCCSCTTTTCTTCCEEECCSSCCSCC------------------------------CCCSSSCCTTCCEEE
T ss_pred ECCCCc-cCccChhHccccCCCCEEECCCCccccc------------------------------CchhhcccccCCEEE
Confidence 777777 55555 3477777777777644321100 001122334455555
Q ss_pred EEeecCcccCccchhhhhhhcccCccccccceEEEEeeCCCCCCc-ccCCCCCCCeeEEEECCCCCCCC-CC-CCCCCCc
Q 003899 274 LKWSTRDVQNLDQCEFETHVLSVLKPHQDVQELTITGYGGTKFPI-WLGDSSFSKLARLELCRCTSTSL-PS-VGQLPFL 350 (788)
Q Consensus 274 l~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~-~~~~~~~~~L~~L~L~~~~~~~l-~~-l~~l~~L 350 (788)
+ +++....++. ++.....++|+.|++++|.+..+ |. ++.+++|
T Consensus 152 L----------------------------------~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L 197 (680)
T 1ziw_A 152 L----------------------------------SNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRL 197 (680)
T ss_dssp C----------------------------------CSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEE
T ss_pred c----------------------------------cCCcccccCHHHhhccccccccEEECCCCcccccChhhhhhhhhh
Confidence 4 4443333321 11101234555555555555222 22 4455555
Q ss_pred cEEEecCCCCceEeCcccccCCCCCCCCCcceEecccccccccccccCCCCcccccC--CcccEEeeecCcccccCCC--
Q 003899 351 MELDISGMDGVKSVGSEFYRRSCSVPFPSLETLSFSDMREWEEWIPCGAGQEVDEVF--PKLRKLSLFNCHKLQGKLP-- 426 (788)
Q Consensus 351 ~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~--~~L~~L~l~~c~~l~~~lp-- 426 (788)
+.|++.++............. ...++|+.|+++++. +..... .....+ ++|++|++++| .+.+..|
T Consensus 198 ~~L~l~~~~l~~~~~~~~~~~---l~~~~L~~L~L~~n~-l~~~~~-----~~~~~l~~~~L~~L~Ls~n-~l~~~~~~~ 267 (680)
T 1ziw_A 198 FGLFLNNVQLGPSLTEKLCLE---LANTSIRNLSLSNSQ-LSTTSN-----TTFLGLKWTNLTMLDLSYN-NLNVVGNDS 267 (680)
T ss_dssp CEEECTTCCCHHHHHHHHHHH---HTTSCCCEEECTTSC-CCEECT-----TTTGGGGGSCCCEEECTTS-CCCEECTTT
T ss_pred hhhhccccccChhhHHHHHHH---hhhccccEEEccCCc-ccccCh-----hHhhccCcCCCCEEECCCC-CcCccCccc
Confidence 555555543211110000000 013455555555532 221111 011122 23666666665 3442222
Q ss_pred -CCCCCccEEEEeccCCc---ccccCCCCCccEEEeccCCcc-----------eecCCcCCCCccEEeccccccceeecc
Q 003899 427 -KRLLLLETLVIKSCQQL---LVTIQCLPALSELQIDGCERV-----------VFSSPIDLSSLKSVHLAYVANEVVLAG 491 (788)
Q Consensus 427 -~~l~~L~~L~l~~c~~l---~~~~~~~~~L~~L~l~~~~~~-----------~~~~~~~~~~L~~L~l~~~~~~~~~~~ 491 (788)
..+++|++|++++|... ...+..+++|++|++++|... ....+..+++|+.|++++|. +..++.
T Consensus 268 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~-l~~~~~ 346 (680)
T 1ziw_A 268 FAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDND-IPGIKS 346 (680)
T ss_dssp TTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCC-BCCCCT
T ss_pred ccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCc-cCCCCh
Confidence 23456666666665422 235667888999998876421 11245678999999999875 444555
Q ss_pred ccccCCCCccEEEEecCcccchhhhcccccccC--CCCCCeEEcccCCCccccccCccccccCCCCcccccceEE-EEEe
Q 003899 492 LFEQGLPKLENLVIVEVREQAYLWQSETRLLQD--IRSLNRLHISRCPRLLSLVTDEEHDQQQPESPYRLRFLEL-KIFI 568 (788)
Q Consensus 492 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~--l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~l~~L~L-~L~l 568 (788)
..+..+++|++|++++|........ ...+.. .++|+.|++++|. +..++.. .+..+++ | .+++
T Consensus 347 ~~~~~l~~L~~L~Ls~n~~~~~~l~--~~~f~~~~~~~L~~L~L~~n~-l~~~~~~--~~~~l~~---------L~~L~L 412 (680)
T 1ziw_A 347 NMFTGLINLKYLSLSNSFTSLRTLT--NETFVSLAHSPLHILNLTKNK-ISKIESD--AFSWLGH---------LEVLDL 412 (680)
T ss_dssp TTTTTCTTCCEEECTTCBSCCCEEC--TTTTGGGTTSCCCEEECTTSC-CCEECTT--TTTTCTT---------CCEEEC
T ss_pred hHhccccCCcEEECCCCchhhhhcc--hhhhcccccCcCceEECCCCC-CCeEChh--hhhCCCC---------CCEEeC
Confidence 5568899999999999864221100 122222 3689999999975 4444332 1223444 7 9999
Q ss_pred cCccCccccc-ccccCCCCcceEEEecCCCCccc-CCCCCCCCcccEEEecccccc--cccccc---cCccceEeccCCC
Q 003899 569 YDLENLQSLP-AGLHNLRHLQKIWISKCPNLESF-PEEGLPSAKLTELMIWRCENL--KALPNS---MSSLLRLGIIGCP 641 (788)
Q Consensus 569 ~~~~~l~~l~-~~~~~l~~L~~L~l~~c~~l~~~-~~~~~~~~~L~~L~l~~c~~l--~~l~~~---~~~L~~L~l~~c~ 641 (788)
.++.....+| ..+.++++|++|++++|. +..+ +..+..+++|++|++.+|..- ..+|.. +.+|++|++++|
T Consensus 413 ~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N- 490 (680)
T 1ziw_A 413 GLNEIGQELTGQEWRGLENIFEIYLSYNK-YLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNN- 490 (680)
T ss_dssp CSSCCEEECCSGGGTTCTTCCEEECCSCS-EEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSS-
T ss_pred CCCcCccccCcccccCcccccEEecCCCC-cceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCC-
Confidence 9987666665 578889999999999975 4444 445556899999999997642 445544 448999999986
Q ss_pred CCCCCCCCCC--CCCccEEEEeccCCCCcc-------cccccCCCCCccEEEEcCCCCCcccCCC----CCCCCCeEecC
Q 003899 642 SLESFPEDGF--PTNLQSLEVRDLKITKPL-------LEWGLNRFTSLRNLSIGGGYPDLLSSPP----FPASLTELWIS 708 (788)
Q Consensus 642 ~l~~~~~~~~--~~~L~~L~l~~~~~~~~~-------~~~~~~~l~~L~~L~l~~~~~~~~~~~~----~~~~L~~L~l~ 708 (788)
.++.++...+ .++|+.|++++|...... +...+.++++|++|++++ +.+..+|. .+++|+.|+++
T Consensus 491 ~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~--N~l~~i~~~~~~~l~~L~~L~Ls 568 (680)
T 1ziw_A 491 NIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLES--NGFDEIPVEVFKDLFELKIIDLG 568 (680)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCS--SCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCC--CCCCCCCHHHcccccCcceeECC
Confidence 5777776543 479999999998765321 112378999999999999 67778886 67899999999
Q ss_pred CCCCcccchhh-cCCCCCCCceecccCCCCcccCCCC---CcCCcceEeecCChhHHHhhcC-CCCcccCcc
Q 003899 709 DMPDLECLSSI-SENLTSLEFLYLIDCPKLKYFPEQG---LPKSLSRLSIHNCPLIEKRCRK-DEGKYWPMI 775 (788)
Q Consensus 709 ~~~~l~~l~~~-~~~l~~L~~L~l~~c~~l~~l~~~~---~~~~L~~L~i~~c~~l~~~~~~-~~~~~~~~~ 775 (788)
+ +.++.+|.. +..+++|+.|++++| .++.+++.. .+++|+.+++++||. ...|.. .+-..|..-
T Consensus 569 ~-N~l~~l~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~~~L~~l~l~~N~~-~c~c~~~~~~~~~~~~ 637 (680)
T 1ziw_A 569 L-NNLNTLPASVFNNQVSLKSLNLQKN-LITSVEKKVFGPAFRNLTELDMRFNPF-DCTCESIAWFVNWINE 637 (680)
T ss_dssp S-SCCCCCCTTTTTTCTTCCEEECTTS-CCCBCCHHHHHHHHTTCSEEECTTCCC-CBCCCCCSSEECCSSC
T ss_pred C-CCCCcCCHhHhCCCCCCCEEECCCC-cCCccChhHhcccccccCEEEccCCCc-ccCCccHHHHHHHHHh
Confidence 9 689999877 789999999999999 788888742 358999999999984 445654 555666543
No 5
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=2e-37 Score=353.24 Aligned_cols=261 Identities=18% Similarity=0.075 Sum_probs=144.8
Q ss_pred CCCccEEEeccCCcceecCCcCCCCccEEeccccccceeeccccccCCCCccEEEEecCcccchhhhcccccccCCCCCC
Q 003899 450 LPALSELQIDGCERVVFSSPIDLSSLKSVHLAYVANEVVLAGLFEQGLPKLENLVIVEVREQAYLWQSETRLLQDIRSLN 529 (788)
Q Consensus 450 ~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~ 529 (788)
+++|+.|+++++.......+..+++|+.|++++|.. +.+|. + .+++|++|++++|..... ..+..+++|+
T Consensus 284 l~~L~~L~l~~~~~~~l~~l~~~~~L~~L~l~~n~l-~~lp~--~-~l~~L~~L~l~~n~~~~~------~~~~~l~~L~ 353 (606)
T 3vq2_A 284 LANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQL-KQFPT--L-DLPFLKSLTLTMNKGSIS------FKKVALPSLS 353 (606)
T ss_dssp GTTCSEEEEESCCCCCCCCCCTTCCCSEEEEESCCC-SSCCC--C-CCSSCCEEEEESCSSCEE------CCCCCCTTCC
T ss_pred CCCCCEEEecCccchhhhhccccccCCEEEcccccC-ccccc--C-CCCccceeeccCCcCccc------hhhccCCCCC
Confidence 444444444444433333344445555555555443 44442 1 455555666555543331 2344555555
Q ss_pred eEEcccCCCccccccCccccccCCCCcccccceEEEEEecCccCcccccccccCCCCcceEEEecCCCCcccCCCCCCCC
Q 003899 530 RLHISRCPRLLSLVTDEEHDQQQPESPYRLRFLELKIFIYDLENLQSLPAGLHNLRHLQKIWISKCPNLESFPEEGLPSA 609 (788)
Q Consensus 530 ~L~l~~c~~l~~~~~~~~~~~~~~~~~~~l~~L~L~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~ 609 (788)
+|++++|. +..++ .+|..+..+++|++|++++| .+..+|..+..++
T Consensus 354 ~L~ls~n~-l~~~~--------------------------------~~~~~~~~~~~L~~L~L~~n-~l~~~~~~~~~l~ 399 (606)
T 3vq2_A 354 YLDLSRNA-LSFSG--------------------------------CCSYSDLGTNSLRHLDLSFN-GAIIMSANFMGLE 399 (606)
T ss_dssp EEECCSSC-EEEEE--------------------------------ECCHHHHCCSCCCEEECCSC-SEEEECCCCTTCT
T ss_pred EEECcCCc-cCCCc--------------------------------chhhhhccCCcccEeECCCC-ccccchhhccCCC
Confidence 55555542 11110 01223344555555555553 3444444444455
Q ss_pred cccEEEecccccccccc----cccCccceEeccCCCCCCCCCCC-CCCCCccEEEEeccCCCCcccccccCCCCCccEEE
Q 003899 610 KLTELMIWRCENLKALP----NSMSSLLRLGIIGCPSLESFPED-GFPTNLQSLEVRDLKITKPLLEWGLNRFTSLRNLS 684 (788)
Q Consensus 610 ~L~~L~l~~c~~l~~l~----~~~~~L~~L~l~~c~~l~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ 684 (788)
+|++|++++|......+ ..+++|++|++++|.-....|.. .-.++|++|++++|...+...+..++.+++|++|+
T Consensus 400 ~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ 479 (606)
T 3vq2_A 400 ELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLD 479 (606)
T ss_dssp TCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEE
T ss_pred CCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEE
Confidence 55555555544333222 12235556666554322222221 12357788888777655544455678888888888
Q ss_pred EcCCCCCcccCC-C---CCCCCCeEecCCCCCcccc-hhhcCCCCCCCceecccCCCCcccCCC--CCcCCcceEeecCC
Q 003899 685 IGGGYPDLLSSP-P---FPASLTELWISDMPDLECL-SSISENLTSLEFLYLIDCPKLKYFPEQ--GLPKSLSRLSIHNC 757 (788)
Q Consensus 685 l~~~~~~~~~~~-~---~~~~L~~L~l~~~~~l~~l-~~~~~~l~~L~~L~l~~c~~l~~l~~~--~~~~~L~~L~i~~c 757 (788)
+++ | .+..++ . .+++|++|++++| .+..+ |..+..+++|++|++++| .++.+|.. .++.+|++|++++|
T Consensus 480 Ls~-n-~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~p~~~~~l~~~L~~l~l~~N 555 (606)
T 3vq2_A 480 LSK-C-QLEQISWGVFDTLHRLQLLNMSHN-NLLFLDSSHYNQLYSLSTLDCSFN-RIETSKGILQHFPKSLAFFNLTNN 555 (606)
T ss_dssp CTT-S-CCCEECTTTTTTCTTCCEEECCSS-CCSCEEGGGTTTCTTCCEEECTTS-CCCCEESCGGGSCTTCCEEECCSC
T ss_pred CCC-C-cCCccChhhhcccccCCEEECCCC-cCCCcCHHHccCCCcCCEEECCCC-cCcccCHhHhhhcccCcEEEccCC
Confidence 888 3 444443 2 5778888888885 55554 667888999999999999 58888875 33457999999887
Q ss_pred h
Q 003899 758 P 758 (788)
Q Consensus 758 ~ 758 (788)
|
T Consensus 556 ~ 556 (606)
T 3vq2_A 556 S 556 (606)
T ss_dssp C
T ss_pred C
Confidence 6
No 6
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=9.7e-37 Score=347.57 Aligned_cols=513 Identities=17% Similarity=0.130 Sum_probs=285.6
Q ss_pred CeeEEEccCCcCcccc-cccccCCCCCceeeccCCccccc-chhhhccccCcEEEccCccchhhc-hhhhhcccCCceEe
Q 003899 119 RLRVFSLHGYSNIIEL-PNEIENLKHLRFLNLSRTSIQIL-PESINSLYNLNTILLEDCYQLKKL-CNDMGNLKKLRHLK 195 (788)
Q Consensus 119 ~Lr~L~L~~~~~l~~l-p~~~~~l~~L~~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~~~l~~l-p~~i~~L~~L~~L~ 195 (788)
.+++|++++| .+..+ |.+|+++++|++|+|++|.+..+ |..|+++++|++|++++| .+..+ |..++++++|++|+
T Consensus 34 ~l~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~ 111 (606)
T 3t6q_A 34 STECLEFSFN-VLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTAN-PLIFMAETALSGPKALKHLF 111 (606)
T ss_dssp TCCEEECTTC-CCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTC-CCSEECTTTTSSCTTCCEEE
T ss_pred cCcEEEccCC-ccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCC-cccccChhhhcccccccEee
Confidence 5677777777 66666 35667777777777777777655 566777777777777777 44333 55567777777777
Q ss_pred cCCCcCcccC-CccCcCCCCcceeCceEeCCCCCCCcccccccccCCceeEEeccCCCCCchhhhhcccCCCcCCceEEE
Q 003899 196 SSNVDSLEEM-PKGFGKLTCLLTLGTFVVGKDGGSGLRELKSLTHLQGTLQISKLENVKDVGDACEAQLNSKENLQALLL 274 (788)
Q Consensus 196 l~~~~~l~~~-p~~i~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l 274 (788)
+++|. +..+ |..++.+++|++|++.++...+
T Consensus 112 L~~n~-i~~l~~~~~~~l~~L~~L~L~~n~l~~----------------------------------------------- 143 (606)
T 3t6q_A 112 FIQTG-ISSIDFIPLHNQKTLESLYLGSNHISS----------------------------------------------- 143 (606)
T ss_dssp CTTSC-CSCGGGSCCTTCTTCCEEECCSSCCCC-----------------------------------------------
T ss_pred ccccC-cccCCcchhccCCcccEEECCCCcccc-----------------------------------------------
Confidence 77776 5554 3446666666666653332110
Q ss_pred EeecCcccCccchhhhhhhcccCccccccceEEEEeeCCCCC-CcccCCCCCCCee--EEEECCCCC-CCCCCCCCCCCc
Q 003899 275 KWSTRDVQNLDQCEFETHVLSVLKPHQDVQELTITGYGGTKF-PIWLGDSSFSKLA--RLELCRCTS-TSLPSVGQLPFL 350 (788)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-p~~~~~~~~~~L~--~L~L~~~~~-~~l~~l~~l~~L 350 (788)
.....+..+++|+.|+++++....+ |.++. .+++|+ .|++++|.+ ...|......+|
T Consensus 144 -----------------~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~--~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L 204 (606)
T 3t6q_A 144 -----------------IKLPKGFPTEKLKVLDFQNNAIHYLSKEDMS--SLQQATNLSLNLNGNDIAGIEPGAFDSAVF 204 (606)
T ss_dssp -----------------CCCCTTCCCTTCCEEECCSSCCCEECHHHHH--TTTTCCSEEEECTTCCCCEECTTTTTTCEE
T ss_pred -----------------cCcccccCCcccCEEEcccCcccccChhhhh--hhcccceeEEecCCCccCccChhHhhhccc
Confidence 0001111234444455544444333 22222 344555 556666655 333333344566
Q ss_pred cEEEecCCCCceEeCcccccCCCCCCCCCcceEecccccccccccccCCCCcccccC--CcccEEeeecCcccccCCCCC
Q 003899 351 MELDISGMDGVKSVGSEFYRRSCSVPFPSLETLSFSDMREWEEWIPCGAGQEVDEVF--PKLRKLSLFNCHKLQGKLPKR 428 (788)
Q Consensus 351 ~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~--~~L~~L~l~~c~~l~~~lp~~ 428 (788)
+.|++++|..+........ -..++.+.+..+..+..... .......+ .+|+.|++++| .+. .++.
T Consensus 205 ~~L~l~~~~~~~~~~~~l~-------~~~l~~l~~~~~~~~~~~~i---~~~~~~~l~~~~L~~L~l~~n-~l~-~~~~- 271 (606)
T 3t6q_A 205 QSLNFGGTQNLLVIFKGLK-------NSTIQSLWLGTFEDMDDEDI---SPAVFEGLCEMSVESINLQKH-YFF-NISS- 271 (606)
T ss_dssp EEEECTTCSCHHHHHHHTT-------TCEEEEEECCCCTTSCCCCC---CGGGGGGGGGSEEEEEECTTC-CCS-SCCT-
T ss_pred cccccCCchhHHHHhhhcc-------ccchhheechhhcccccccc---ChhHhchhhcCceeEEEeecC-ccC-ccCH-
Confidence 6666666542221111000 11222222222221111110 00000011 14555555554 333 2221
Q ss_pred CCCccEEEEeccCCcccccCCCCCccEEEeccCCcce-ecCCcCCCCccEEeccccccceeeccccccCCCCccEEEEec
Q 003899 429 LLLLETLVIKSCQQLLVTIQCLPALSELQIDGCERVV-FSSPIDLSSLKSVHLAYVANEVVLAGLFEQGLPKLENLVIVE 507 (788)
Q Consensus 429 l~~L~~L~l~~c~~l~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~ 507 (788)
..+..+++|++|++++|.... +..+..+++|+.|++++|.. +.++...+..+++|++|++++
T Consensus 272 ----------------~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l-~~~~~~~~~~l~~L~~L~l~~ 334 (606)
T 3t6q_A 272 ----------------NTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKF-ENLCQISASNFPSLTHLSIKG 334 (606)
T ss_dssp ----------------TTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCC-SBGGGGCGGGCTTCSEEECCS
T ss_pred ----------------HHhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCc-CcCchhhhhccCcCCEEECCC
Confidence 234556666667766666332 23345566677777766543 333333346667777777777
Q ss_pred CcccchhhhcccccccCCCCCCeEEcccCCCccccccCccccccCCCCcccccceEEEEEecCccCcccccccccCCCCc
Q 003899 508 VREQAYLWQSETRLLQDIRSLNRLHISRCPRLLSLVTDEEHDQQQPESPYRLRFLELKIFIYDLENLQSLPAGLHNLRHL 587 (788)
Q Consensus 508 ~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~l~~L~L~L~l~~~~~l~~l~~~~~~l~~L 587 (788)
|.....+. +..+..+++|++|++++|. +..+. ..+..+..+++|
T Consensus 335 n~~~~~~~---~~~~~~l~~L~~L~l~~n~-l~~~~--------------------------------~~~~~~~~l~~L 378 (606)
T 3t6q_A 335 NTKRLELG---TGCLENLENLRELDLSHDD-IETSD--------------------------------CCNLQLRNLSHL 378 (606)
T ss_dssp CSSCCBCC---SSTTTTCTTCCEEECCSSC-CCEEE--------------------------------ESTTTTTTCTTC
T ss_pred CCcccccc---hhhhhccCcCCEEECCCCc-ccccc--------------------------------CcchhcccCCCC
Confidence 76553330 2346667777777777653 22111 013345566777
Q ss_pred ceEEEecCCCCcccCCCCCCCCcccEEEeccccccccccc----ccCccceEeccCCCCCCCCCCCC--CCCCccEEEEe
Q 003899 588 QKIWISKCPNLESFPEEGLPSAKLTELMIWRCENLKALPN----SMSSLLRLGIIGCPSLESFPEDG--FPTNLQSLEVR 661 (788)
Q Consensus 588 ~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~c~~l~~l~~----~~~~L~~L~l~~c~~l~~~~~~~--~~~~L~~L~l~ 661 (788)
++|++++|......|..+..+++|++|++++|......+. .+++|++|++++|. +...+... ..++|++|+++
T Consensus 379 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~L~ 457 (606)
T 3t6q_A 379 QSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSL-LDISSEQLFDGLPALQHLNLQ 457 (606)
T ss_dssp CEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCC-CBTTCTTTTTTCTTCCEEECT
T ss_pred CEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCc-cCCcCHHHHhCCCCCCEEECC
Confidence 7777777533333344555567777777777654433322 33477777877764 44333322 35688999998
Q ss_pred ccCCCCcc--cccccCCCCCccEEEEcCCCCCcccCC-C---CCCCCCeEecCCCCCcccchhhcCCCCCCCceecccCC
Q 003899 662 DLKITKPL--LEWGLNRFTSLRNLSIGGGYPDLLSSP-P---FPASLTELWISDMPDLECLSSISENLTSLEFLYLIDCP 735 (788)
Q Consensus 662 ~~~~~~~~--~~~~~~~l~~L~~L~l~~~~~~~~~~~-~---~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~ 735 (788)
+|+..+.. ....+..+++|++|++++ | .+..++ . .+++|++|++++|.-....|..+..+++| .|++++|
T Consensus 458 ~n~l~~~~~~~~~~~~~l~~L~~L~Ls~-n-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N- 533 (606)
T 3t6q_A 458 GNHFPKGNIQKTNSLQTLGRLEILVLSF-C-DLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASN- 533 (606)
T ss_dssp TCBCGGGEECSSCGGGGCTTCCEEECTT-S-CCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSS-
T ss_pred CCCCCccccccchhhccCCCccEEECCC-C-ccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCC-
Confidence 88765422 223578899999999998 4 455553 3 67899999999964334456679999999 9999999
Q ss_pred CCcccCCCC--CcCCcceEeecCChhHHHhhcCCCCccc
Q 003899 736 KLKYFPEQG--LPKSLSRLSIHNCPLIEKRCRKDEGKYW 772 (788)
Q Consensus 736 ~l~~l~~~~--~~~~L~~L~i~~c~~l~~~~~~~~~~~~ 772 (788)
.++.+++.. .+++|++|++++||- ...|...+..+|
T Consensus 534 ~l~~~~~~~~~~l~~L~~L~l~~N~~-~c~c~~~~~~~w 571 (606)
T 3t6q_A 534 HISIILPSLLPILSQQRTINLRQNPL-DCTCSNIYFLEW 571 (606)
T ss_dssp CCCCCCGGGHHHHHTSSEEECTTCCE-ECSGGGHHHHHH
T ss_pred cccccCHhhcccCCCCCEEeCCCCCc-cccCCcHHHHHH
Confidence 677776643 357899999999873 333443333334
No 7
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=1.4e-34 Score=329.60 Aligned_cols=433 Identities=16% Similarity=0.131 Sum_probs=249.9
Q ss_pred ccCCceeEEEEEccCCccccccccccCCCceeEEEeccCCccccchhhhhHHHHhCCCCCeeEEEccCCcCcccc-cccc
Q 003899 60 KFCQSLRHFSYICGESDGEKRLQSVCDVEHLRTFLPVNLSNYRINYLAWSVLQMLMNLPRLRVFSLHGYSNIIEL-PNEI 138 (788)
Q Consensus 60 ~~~~~~r~lsl~~~~~~~~~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~l~~l-p~~~ 138 (788)
..+..++++.+..+.+.... ...+.++++|++|.+.++. +..-.|..|.++++|++|+|++| .+..+ |..|
T Consensus 29 ~~~~~l~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~Ls~n~------l~~i~~~~~~~l~~L~~L~Ls~n-~l~~~~p~~~ 100 (606)
T 3vq2_A 29 DIPSSTKNIDLSFNPLKILK-SYSFSNFSELQWLDLSRCE------IETIEDKAWHGLHHLSNLILTGN-PIQSFSPGSF 100 (606)
T ss_dssp TSCTTCCEEECTTSCCCEEC-TTTTTTCTTCCEEECTTCC------CCEECTTTTTTCTTCCEEECTTC-CCCCCCTTSS
T ss_pred CCCCCcCEEECCCCCcCEeC-hhhccCCccCcEEeCCCCc------ccccCHHHhhchhhcCEeECCCC-cccccChhhc
Confidence 35567888888877654332 2456778888888777653 22223447788888888888888 67776 6778
Q ss_pred cCCCCCceeeccCCcccccc-hhhhccccCcEEEccCccchh--hchhhhhcccCCceEecCCCcCcccC-CccCcCCCC
Q 003899 139 ENLKHLRFLNLSRTSIQILP-ESINSLYNLNTILLEDCYQLK--KLCNDMGNLKKLRHLKSSNVDSLEEM-PKGFGKLTC 214 (788)
Q Consensus 139 ~~l~~L~~L~L~~~~i~~lp-~~i~~L~~L~~L~L~~~~~l~--~lp~~i~~L~~L~~L~l~~~~~l~~~-p~~i~~l~~ 214 (788)
+++++|++|+|++|.+..+| ..++++++|++|++++| .+. .+|..++++++|++|++++|. +..+ |..++.+++
T Consensus 101 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~lp~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~ 178 (606)
T 3vq2_A 101 SGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHN-FIHSCKLPAYFSNLTNLVHVDLSYNY-IQTITVNDLQFLRE 178 (606)
T ss_dssp TTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSS-CCCCCCCCGGGGTCTTCCEEECCSSC-CCEECTTTTHHHHH
T ss_pred CCcccCCEEEccCCccccccccccCCCCCCCEEeCCCC-cccceechHhHhhcCCCCEEEccCCc-ceecChhhhhhhhc
Confidence 88888888888888887775 66888888888888888 554 467778888888888888887 5444 444666666
Q ss_pred cc----eeCceEeCCCC-CCCcccccccccCCceeEEeccCCCCCchhhhhcccCCCcCCceEEEEeecCcccCccchhh
Q 003899 215 LL----TLGTFVVGKDG-GSGLRELKSLTHLQGTLQISKLENVKDVGDACEAQLNSKENLQALLLKWSTRDVQNLDQCEF 289 (788)
Q Consensus 215 L~----~L~~~~~~~~~-~~~~~~l~~L~~L~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~ 289 (788)
|+ +|++..+.... ...... ...|+ .+.+... ..........+..+++++.+.+..+.......- ...
T Consensus 179 L~~~l~~L~l~~n~l~~~~~~~~~---~~~L~-~L~L~~n---~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l-~~~ 250 (606)
T 3vq2_A 179 NPQVNLSLDMSLNPIDFIQDQAFQ---GIKLH-ELTLRGN---FNSSNIMKTCLQNLAGLHVHRLILGEFKDERNL-EIF 250 (606)
T ss_dssp CTTCCCEEECTTCCCCEECTTTTT---TCEEE-EEEEESC---CSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCC-SCC
T ss_pred cccccceeeccCCCcceeCccccc---Cceee-eeeccCC---ccchhHHHHHhccccccccccccccccccCCcc-ccc
Confidence 55 56654443322 111111 11232 3333221 111233344456667777777765543100000 000
Q ss_pred hhhhcccCccccccceEEEEe-eCCCC-CCcccCCCCCCCeeEEEECCCCCCCCCCCCCCCCccEEEecCCCCceEeCcc
Q 003899 290 ETHVLSVLKPHQDVQELTITG-YGGTK-FPIWLGDSSFSKLARLELCRCTSTSLPSVGQLPFLMELDISGMDGVKSVGSE 367 (788)
Q Consensus 290 ~~~~~~~l~~~~~L~~L~l~~-~~~~~-~p~~~~~~~~~~L~~L~L~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~~~~ 367 (788)
....+..+... .++.+++.. +.... .|. + ..+++|+.|+++++.+..+|.+..+++|++|++++|.. +.++ .
T Consensus 251 ~~~~~~~l~~l-~l~~l~l~~~~~~~~~~~~-~--~~l~~L~~L~l~~~~~~~l~~l~~~~~L~~L~l~~n~l-~~lp-~ 324 (606)
T 3vq2_A 251 EPSIMEGLCDV-TIDEFRLTYTNDFSDDIVK-F--HCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQL-KQFP-T 324 (606)
T ss_dssp CGGGGTTGGGS-EEEEEEECCCTTCCGGGGS-C--GGGTTCSEEEEESCCCCCCCCCCTTCCCSEEEEESCCC-SSCC-C
T ss_pred ChHHhhhhhhc-cHhheeccccccccccccc-c--ccCCCCCEEEecCccchhhhhccccccCCEEEcccccC-cccc-c
Confidence 11111111111 334444422 22221 122 2 25777888888887776677777777888888887754 5554 2
Q ss_pred cccCCCCCCCCCcceEecccccccccccccCCCCcccccCCcccEEeeecCcccccC--CC---CCCCCccEEEEeccCC
Q 003899 368 FYRRSCSVPFPSLETLSFSDMREWEEWIPCGAGQEVDEVFPKLRKLSLFNCHKLQGK--LP---KRLLLLETLVIKSCQQ 442 (788)
Q Consensus 368 ~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~--lp---~~l~~L~~L~l~~c~~ 442 (788)
+ . +++|++|+++++.....+ ....+++|++|++++| .+.+. +| ..+++|++|++++|..
T Consensus 325 ~--~-----l~~L~~L~l~~n~~~~~~--------~~~~l~~L~~L~ls~n-~l~~~~~~~~~~~~~~~L~~L~L~~n~l 388 (606)
T 3vq2_A 325 L--D-----LPFLKSLTLTMNKGSISF--------KKVALPSLSYLDLSRN-ALSFSGCCSYSDLGTNSLRHLDLSFNGA 388 (606)
T ss_dssp C--C-----CSSCCEEEEESCSSCEEC--------CCCCCTTCCEEECCSS-CEEEEEECCHHHHCCSCCCEEECCSCSE
T ss_pred C--C-----CCccceeeccCCcCccch--------hhccCCCCCEEECcCC-ccCCCcchhhhhccCCcccEeECCCCcc
Confidence 2 1 777888888776444433 2345778888888877 44421 13 2455566666655542
Q ss_pred c--ccccCCCCCccEEEeccCCccee---cCCcCCCCccEEeccccccceeeccccccCCCCccEEEEecCcccch-hhh
Q 003899 443 L--LVTIQCLPALSELQIDGCERVVF---SSPIDLSSLKSVHLAYVANEVVLAGLFEQGLPKLENLVIVEVREQAY-LWQ 516 (788)
Q Consensus 443 l--~~~~~~~~~L~~L~l~~~~~~~~---~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~ 516 (788)
. ...+..+++|++|++++|..... ..+..+++|+.|++++|......+. .+..+++|+.|++++|..... .
T Consensus 389 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~-- 465 (606)
T 3vq2_A 389 IIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDG-IFLGLTSLNTLKMAGNSFKDNTL-- 465 (606)
T ss_dssp EEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTT-TTTTCTTCCEEECTTCEEGGGEE--
T ss_pred ccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchh-hhcCCCCCCEEECCCCcCCCcch--
Confidence 1 23445566666666666653222 2344566666666666553333332 245566666666666655542 3
Q ss_pred cccccccCCCCCCeEEcccCC
Q 003899 517 SETRLLQDIRSLNRLHISRCP 537 (788)
Q Consensus 517 ~~~~~~~~l~~L~~L~l~~c~ 537 (788)
+..+..+++|++|++++|.
T Consensus 466 --~~~~~~l~~L~~L~Ls~n~ 484 (606)
T 3vq2_A 466 --SNVFANTTNLTFLDLSKCQ 484 (606)
T ss_dssp --CSCCTTCTTCCEEECTTSC
T ss_pred --HHhhccCCCCCEEECCCCc
Confidence 5556666666666666653
No 8
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=1.1e-34 Score=330.51 Aligned_cols=288 Identities=15% Similarity=0.128 Sum_probs=153.6
Q ss_pred CeeEEEECCCCCCCCCC--CCCCCCccEEEecCCCCceEeCcccccCCCCCCCCCcceEecccccccccccccCCCCccc
Q 003899 327 KLARLELCRCTSTSLPS--VGQLPFLMELDISGMDGVKSVGSEFYRRSCSVPFPSLETLSFSDMREWEEWIPCGAGQEVD 404 (788)
Q Consensus 327 ~L~~L~L~~~~~~~l~~--l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~ 404 (788)
+++.|++++|.+..++. ++.+++|++|++++|. +..++..+.. +++|++|+++++ .+..... ...
T Consensus 255 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~lp~~l~~------l~~L~~L~l~~n-~l~~~~~-----~~~ 321 (606)
T 3t6q_A 255 SVESINLQKHYFFNISSNTFHCFSGLQELDLTATH-LSELPSGLVG------LSTLKKLVLSAN-KFENLCQ-----ISA 321 (606)
T ss_dssp EEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSC-CSCCCSSCCS------CTTCCEEECTTC-CCSBGGG-----GCG
T ss_pred ceeEEEeecCccCccCHHHhccccCCCEEeccCCc-cCCCChhhcc------cccCCEEECccC-CcCcCch-----hhh
Confidence 56666666666633332 6666667777776663 3344443321 666677776664 2222211 034
Q ss_pred ccCCcccEEeeecCcccccCCCC----CCCCccEEEEeccCCc-----ccccCCCCCccEEEeccCCcce--ecCCcCCC
Q 003899 405 EVFPKLRKLSLFNCHKLQGKLPK----RLLLLETLVIKSCQQL-----LVTIQCLPALSELQIDGCERVV--FSSPIDLS 473 (788)
Q Consensus 405 ~~~~~L~~L~l~~c~~l~~~lp~----~l~~L~~L~l~~c~~l-----~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~ 473 (788)
..+++|++|++++| .+.+.+|. .+++|++|++++|... ...+..+++|++|++++|.... ...+..++
T Consensus 322 ~~l~~L~~L~l~~n-~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 400 (606)
T 3t6q_A 322 SNFPSLTHLSIKGN-TKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECP 400 (606)
T ss_dssp GGCTTCSEEECCSC-SSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCT
T ss_pred hccCcCCEEECCCC-CcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCc
Confidence 45677777777776 33323432 3455555555554322 1234556666666666665322 23344566
Q ss_pred CccEEeccccccceeeccccccCCCCccEEEEecCcccchhhhcccccccCCCCCCeEEcccCCCccccccCccccccCC
Q 003899 474 SLKSVHLAYVANEVVLAGLFEQGLPKLENLVIVEVREQAYLWQSETRLLQDIRSLNRLHISRCPRLLSLVTDEEHDQQQP 553 (788)
Q Consensus 474 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~ 553 (788)
+|+.|++++|......+...+..+++|+.|++++|...... +..+..+++|++|++++|........
T Consensus 401 ~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~----~~~~~~l~~L~~L~L~~n~l~~~~~~--------- 467 (606)
T 3t6q_A 401 QLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISS----EQLFDGLPALQHLNLQGNHFPKGNIQ--------- 467 (606)
T ss_dssp TCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTC----TTTTTTCTTCCEEECTTCBCGGGEEC---------
T ss_pred cCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcC----HHHHhCCCCCCEEECCCCCCCccccc---------
Confidence 66666666654433333333456666666666666655544 55566666666666666542111000
Q ss_pred CCcccccceEEEEEecCccCcccccccccCCCCcceEEEecCCCCcccCCCCCCCCcccEEEecccccccccccccC---
Q 003899 554 ESPYRLRFLELKIFIYDLENLQSLPAGLHNLRHLQKIWISKCPNLESFPEEGLPSAKLTELMIWRCENLKALPNSMS--- 630 (788)
Q Consensus 554 ~~~~~l~~L~L~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~--- 630 (788)
.+..+..+++|+.|++++|......|..+..+++|++|++++|......|..+.
T Consensus 468 -----------------------~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~ 524 (606)
T 3t6q_A 468 -----------------------KTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLK 524 (606)
T ss_dssp -----------------------SSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCC
T ss_pred -----------------------cchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccc
Confidence 112345566666666666533222344455566666666666654444444443
Q ss_pred ccceEeccCCCCCCCCCCCCC--CCCccEEEEeccCCC
Q 003899 631 SLLRLGIIGCPSLESFPEDGF--PTNLQSLEVRDLKIT 666 (788)
Q Consensus 631 ~L~~L~l~~c~~l~~~~~~~~--~~~L~~L~l~~~~~~ 666 (788)
+| +|++++| .++.++...+ .++|+.|++++|+..
T Consensus 525 ~L-~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~~ 560 (606)
T 3t6q_A 525 GI-YLNLASN-HISIILPSLLPILSQQRTINLRQNPLD 560 (606)
T ss_dssp SC-EEECCSS-CCCCCCGGGHHHHHTSSEEECTTCCEE
T ss_pred cc-EEECcCC-cccccCHhhcccCCCCCEEeCCCCCcc
Confidence 45 6666664 3444443322 246777777776654
No 9
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=2.2e-33 Score=330.22 Aligned_cols=106 Identities=20% Similarity=0.153 Sum_probs=73.6
Q ss_pred CCCCeeEEEccCCcCcccc-cccccCCCCCceeeccCCc-cccc-chhhhccccCcEEEccCccchhhc-hhhhhcccCC
Q 003899 116 NLPRLRVFSLHGYSNIIEL-PNEIENLKHLRFLNLSRTS-IQIL-PESINSLYNLNTILLEDCYQLKKL-CNDMGNLKKL 191 (788)
Q Consensus 116 ~l~~Lr~L~L~~~~~l~~l-p~~~~~l~~L~~L~L~~~~-i~~l-p~~i~~L~~L~~L~L~~~~~l~~l-p~~i~~L~~L 191 (788)
..++|++|+|++| .+..+ |.+|.++++|++|+|++|. +..+ |..|+++++|++|+|++| .+..+ |..|+++++|
T Consensus 22 lp~~l~~LdLs~N-~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N-~l~~~~p~~~~~l~~L 99 (844)
T 3j0a_A 22 VLNTTERLLLSFN-YIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSS-KIYFLHPDAFQGLFHL 99 (844)
T ss_dssp SCTTCCEEEEESC-CCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTC-CCCEECTTSSCSCSSC
T ss_pred CCCCcCEEECCCC-cCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCC-cCcccCHhHccCCccc
Confidence 3467778888877 66666 4677778888888887774 4456 667777888888888777 44444 6667778888
Q ss_pred ceEecCCCcCcccCCcc--CcCCCCcceeCceEe
Q 003899 192 RHLKSSNVDSLEEMPKG--FGKLTCLLTLGTFVV 223 (788)
Q Consensus 192 ~~L~l~~~~~l~~~p~~--i~~l~~L~~L~~~~~ 223 (788)
++|++++|.....+|.. ++++++|++|++..+
T Consensus 100 ~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N 133 (844)
T 3j0a_A 100 FELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKN 133 (844)
T ss_dssp CCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESC
T ss_pred CEeeCcCCCCCcccccCccccccCCCCEEECCCC
Confidence 88888877733334544 777777777776554
No 10
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=3.1e-33 Score=314.72 Aligned_cols=462 Identities=20% Similarity=0.198 Sum_probs=254.3
Q ss_pred CCeeEEEccCCcCcccc-cccccCCCCCceeeccCCcccccc-hhhhccccCcEEEccCccchhhchhh-hhcccCCceE
Q 003899 118 PRLRVFSLHGYSNIIEL-PNEIENLKHLRFLNLSRTSIQILP-ESINSLYNLNTILLEDCYQLKKLCND-MGNLKKLRHL 194 (788)
Q Consensus 118 ~~Lr~L~L~~~~~l~~l-p~~~~~l~~L~~L~L~~~~i~~lp-~~i~~L~~L~~L~L~~~~~l~~lp~~-i~~L~~L~~L 194 (788)
++|++|++++| .+..+ |.+|+++++|++|+|++|.++.+| ..|+.+++|++|++++| .+..+|.. ++++++|++|
T Consensus 26 ~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L 103 (549)
T 2z81_A 26 AAMKSLDLSFN-KITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDN-HLSSLSSSWFGPLSSLKYL 103 (549)
T ss_dssp TTCCEEECCSS-CCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTS-CCCSCCHHHHTTCTTCCEE
T ss_pred CCccEEECcCC-ccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCC-ccCccCHHHhccCCCCcEE
Confidence 68999999999 78877 477899999999999999999774 77999999999999999 66666665 8999999999
Q ss_pred ecCCCcCccc--CCccCcCCCCcceeCceEeCCCCCCCcccccccccCCceeEEeccCCCCCchhhhhcccCCCcCCceE
Q 003899 195 KSSNVDSLEE--MPKGFGKLTCLLTLGTFVVGKDGGSGLRELKSLTHLQGTLQISKLENVKDVGDACEAQLNSKENLQAL 272 (788)
Q Consensus 195 ~l~~~~~l~~--~p~~i~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L 272 (788)
++++|. +.. +|..++++++|++|++.++...+. .....+.++++|+.|
T Consensus 104 ~Ls~n~-l~~~~~~~~~~~l~~L~~L~L~~n~~~~~-----------------------------~~~~~~~~l~~L~~L 153 (549)
T 2z81_A 104 NLMGNP-YQTLGVTSLFPNLTNLQTLRIGNVETFSE-----------------------------IRRIDFAGLTSLNEL 153 (549)
T ss_dssp ECTTCC-CSSSCSSCSCTTCTTCCEEEEEESSSCCE-----------------------------ECTTTTTTCCEEEEE
T ss_pred ECCCCc-ccccchhhhhhccCCccEEECCCCccccc-----------------------------cCHhhhhcccccCee
Confidence 999998 653 466788999999998866531110 001124455677777
Q ss_pred EEEeecCcccCccchhhhhhhcccCccccccceEEEEeeCCCCCCcccCCCCCCCeeEEEECCCCCCCC-----CCCCCC
Q 003899 273 LLKWSTRDVQNLDQCEFETHVLSVLKPHQDVQELTITGYGGTKFPIWLGDSSFSKLARLELCRCTSTSL-----PSVGQL 347 (788)
Q Consensus 273 ~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~L~~~~~~~l-----~~l~~l 347 (788)
+++++.. ....+..+..+++|+.|+++++....+|.++. ..+++|+.|++++|.+..+ +....+
T Consensus 154 ~L~~n~l----------~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~ 222 (549)
T 2z81_A 154 EIKALSL----------RNYQSQSLKSIRDIHHLTLHLSESAFLLEIFA-DILSSVRYLELRDTNLARFQFSPLPVDEVS 222 (549)
T ss_dssp EEEETTC----------CEECTTTTTTCSEEEEEEEECSBSTTHHHHHH-HSTTTBSEEEEESCBCTTCCCCCCSSCCCC
T ss_pred eccCCcc----------cccChhhhhccccCceEecccCcccccchhhH-hhcccccEEEccCCccccccccccchhhhh
Confidence 7777665 33345566667778888887777666665543 1467777777777776322 223456
Q ss_pred CCccEEEecCCCCceEeCcccccCCCCCCCCCcceEecccccccccccccCCCCcccccCCcccEEeeecCcccccCCCC
Q 003899 348 PFLMELDISGMDGVKSVGSEFYRRSCSVPFPSLETLSFSDMREWEEWIPCGAGQEVDEVFPKLRKLSLFNCHKLQGKLPK 427 (788)
Q Consensus 348 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~lp~ 427 (788)
++|+.|++++|......+.. +.. ....+++|+.+++++| .+.+ ++.
T Consensus 223 ~~L~~L~l~~n~l~~~~~~~--------------------------l~~------~~~~~~~L~~l~l~~~-~~~~-~~~ 268 (549)
T 2z81_A 223 SPMKKLAFRGSVLTDESFNE--------------------------LLK------LLRYILELSEVEFDDC-TLNG-LGD 268 (549)
T ss_dssp CCCCEEEEESCEEEHHHHHH--------------------------HHG------GGGGCTTCCEEEEESC-EEEC-CSC
T ss_pred hcccceeccccccchhHHHH--------------------------HHH------Hhhhhccccccccccc-cccc-ccc
Confidence 66777777666311111000 000 1223555666666665 2221 110
Q ss_pred CCCCccEEEEeccCCcccccCCCCCccEEEeccCCcceecC-------CcCCCCccEEeccccccceeeccccccCCCCc
Q 003899 428 RLLLLETLVIKSCQQLLVTIQCLPALSELQIDGCERVVFSS-------PIDLSSLKSVHLAYVANEVVLAGLFEQGLPKL 500 (788)
Q Consensus 428 ~l~~L~~L~l~~c~~l~~~~~~~~~L~~L~l~~~~~~~~~~-------~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L 500 (788)
++ ......+..+++|+.|.+.++....... ....++|+.|++++|. ++.+|...+..+++|
T Consensus 269 -~~----------~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~-l~~ip~~~~~~l~~L 336 (549)
T 2z81_A 269 -FN----------PSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSK-VFLVPCSFSQHLKSL 336 (549)
T ss_dssp -CC----------CCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSC-CCCCCHHHHHHCTTC
T ss_pred -cc----------ccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCc-cccCCHHHHhcCccc
Confidence 00 0000112223333344433332111100 1123456666666643 455665544567777
Q ss_pred cEEEEecCcccchhhhcccccccCCCCCCeEEcccCCCccccccCccccccCCCCcccccceEEEEEecCccCccccccc
Q 003899 501 ENLVIVEVREQAYLWQSETRLLQDIRSLNRLHISRCPRLLSLVTDEEHDQQQPESPYRLRFLELKIFIYDLENLQSLPAG 580 (788)
Q Consensus 501 ~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~l~~L~L~L~l~~~~~l~~l~~~ 580 (788)
+.|++++|........ .+..+..+++|++|++++|. ++.++.. +..
T Consensus 337 ~~L~Ls~N~l~~~~~~-~~~~~~~l~~L~~L~Ls~N~-l~~~~~~--------------------------------~~~ 382 (549)
T 2z81_A 337 EFLDLSENLMVEEYLK-NSACKGAWPSLQTLVLSQNH-LRSMQKT--------------------------------GEI 382 (549)
T ss_dssp CEEECCSSCCCHHHHH-HHTCTTSSTTCCEEECTTSC-CCCHHHH--------------------------------HHH
T ss_pred cEEEccCCcccccccc-chhhhhccccCcEEEccCCc-ccccccc--------------------------------hhh
Confidence 7777777766554300 01225566777777777753 3322210 011
Q ss_pred ccCCCCcceEEEecCCCCcccCCCCCCCCcccEEEecccccccccccccC-ccceEeccCCCCCCCCCCCCCCCCccEEE
Q 003899 581 LHNLRHLQKIWISKCPNLESFPEEGLPSAKLTELMIWRCENLKALPNSMS-SLLRLGIIGCPSLESFPEDGFPTNLQSLE 659 (788)
Q Consensus 581 ~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~-~L~~L~l~~c~~l~~~~~~~~~~~L~~L~ 659 (788)
+..+++|++|++++| .++.+|.....+++|++|++++|. ++.+|..++ +|++|++++| .++.++ ...++|++|+
T Consensus 383 ~~~l~~L~~L~Ls~N-~l~~lp~~~~~~~~L~~L~Ls~N~-l~~l~~~~~~~L~~L~Ls~N-~l~~~~--~~l~~L~~L~ 457 (549)
T 2z81_A 383 LLTLKNLTSLDISRN-TFHPMPDSCQWPEKMRFLNLSSTG-IRVVKTCIPQTLEVLDVSNN-NLDSFS--LFLPRLQELY 457 (549)
T ss_dssp GGGCTTCCEEECTTC-CCCCCCSCCCCCTTCCEEECTTSC-CSCCCTTSCTTCSEEECCSS-CCSCCC--CCCTTCCEEE
T ss_pred hhcCCCCCEEECCCC-CCccCChhhcccccccEEECCCCC-cccccchhcCCceEEECCCC-Chhhhc--ccCChhcEEE
Confidence 233444444444443 333444444444444444444433 223332222 4455555443 233332 1234555555
Q ss_pred EeccCCCCcccccccCCCCCccEEEEcCCCCCcccCCC----CCCCCCeEecCCCCC
Q 003899 660 VRDLKITKPLLEWGLNRFTSLRNLSIGGGYPDLLSSPP----FPASLTELWISDMPD 712 (788)
Q Consensus 660 l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~----~~~~L~~L~l~~~~~ 712 (788)
+++|+.. .++. ...+++|++|++++ +.+..++. .+++|+.|++++|+.
T Consensus 458 Ls~N~l~-~ip~--~~~l~~L~~L~Ls~--N~l~~~~~~~~~~l~~L~~L~l~~N~~ 509 (549)
T 2z81_A 458 ISRNKLK-TLPD--ASLFPVLLVMKISR--NQLKSVPDGIFDRLTSLQKIWLHTNPW 509 (549)
T ss_dssp CCSSCCS-SCCC--GGGCTTCCEEECCS--SCCCCCCTTGGGGCTTCCEEECCSSCB
T ss_pred CCCCccC-cCCC--cccCccCCEEecCC--CccCCcCHHHHhcCcccCEEEecCCCc
Confidence 5554332 3332 23455555555555 33444433 445666666666543
No 11
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=2.3e-31 Score=313.08 Aligned_cols=502 Identities=19% Similarity=0.164 Sum_probs=323.6
Q ss_pred CCCceeEEEeccCCccccchhhhhHHHHhCCCCCeeEEEccCCcCcccc-cccccCCCCCceeeccCCccccc-chhhhc
Q 003899 86 DVEHLRTFLPVNLSNYRINYLAWSVLQMLMNLPRLRVFSLHGYSNIIEL-PNEIENLKHLRFLNLSRTSIQIL-PESINS 163 (788)
Q Consensus 86 ~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~l~~l-p~~~~~l~~L~~L~L~~~~i~~l-p~~i~~ 163 (788)
-.++++.|.+.++. +....+..|.++++|++|+|++|..+..+ |.+|+++++|++|+|++|.|..+ |..|+.
T Consensus 22 lp~~l~~LdLs~N~------i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~ 95 (844)
T 3j0a_A 22 VLNTTERLLLSFNY------IRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQG 95 (844)
T ss_dssp SCTTCCEEEEESCC------CCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCS
T ss_pred CCCCcCEEECCCCc------CCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccC
Confidence 45789999998864 33333458999999999999999666777 68899999999999999999977 889999
Q ss_pred cccCcEEEccCccchhhchhh--hhcccCCceEecCCCcCcccCC--ccCcCCCCcceeCceEeCCCC--CCCccccccc
Q 003899 164 LYNLNTILLEDCYQLKKLCND--MGNLKKLRHLKSSNVDSLEEMP--KGFGKLTCLLTLGTFVVGKDG--GSGLRELKSL 237 (788)
Q Consensus 164 L~~L~~L~L~~~~~l~~lp~~--i~~L~~L~~L~l~~~~~l~~~p--~~i~~l~~L~~L~~~~~~~~~--~~~~~~l~~L 237 (788)
+++|++|+|++|.....+|.. ++.+++|++|++++|. +..++ ..++++++|++|++..+.... ...+..+..
T Consensus 96 l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~-l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~- 173 (844)
T 3j0a_A 96 LFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQ-IRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQG- 173 (844)
T ss_dssp CSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCC-CCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHH-
T ss_pred CcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCc-ccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccC-
Confidence 999999999999433446665 8999999999999998 55543 469999999999998776543 233333311
Q ss_pred ccCCceeEEeccCCCCCchhhhhcccCCC------cCCceEEEEeecCcccCccchhhhhhhcccCccccccceEEEEee
Q 003899 238 THLQGTLQISKLENVKDVGDACEAQLNSK------ENLQALLLKWSTRDVQNLDQCEFETHVLSVLKPHQDVQELTITGY 311 (788)
Q Consensus 238 ~~L~~~l~~~~~~~~~~~~~~~~~~l~~~------~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 311 (788)
..|+ .+.+......... ...+..+ ..|+.|+++.+..... .............++.+.+..+
T Consensus 174 ~~L~-~L~L~~n~l~~~~----~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~-------~~~~~~~~l~~~~l~~L~l~~~ 241 (844)
T 3j0a_A 174 KTLS-FFSLAANSLYSRV----SVDWGKCMNPFRNMVLEILDVSGNGWTVD-------ITGNFSNAISKSQAFSLILAHH 241 (844)
T ss_dssp CSSC-CCEECCSBSCCCC----CCCCCSSSCTTTTCCBSEEBCSSCCSSTT-------TTSGGGGTSCSCCBSEEECCSS
T ss_pred Cccc-eEECCCCcccccc----ccchhhcCCccccCceeEEecCCCcCchh-------HHHHHHhhcCcccccceecccc
Confidence 3343 3333322111111 1112222 2488888877654100 0001111122345666666522
Q ss_pred CCC------CC----CcccCCCCCCCeeEEEECCCCCCC-CC-CCCCCCCccEEEecCCCCceEeCcccccCCCCCCCCC
Q 003899 312 GGT------KF----PIWLGDSSFSKLARLELCRCTSTS-LP-SVGQLPFLMELDISGMDGVKSVGSEFYRRSCSVPFPS 379 (788)
Q Consensus 312 ~~~------~~----p~~~~~~~~~~L~~L~L~~~~~~~-l~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~ 379 (788)
... .+ +..+.....++|+.|++++|.+.. .+ .++.+++|+.|++++|.. ..++...+.. +++
T Consensus 242 ~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i-~~~~~~~~~~-----l~~ 315 (844)
T 3j0a_A 242 IMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKI-NKIADEAFYG-----LDN 315 (844)
T ss_dssp CCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCC-CEECTTTTTT-----CSS
T ss_pred cccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcC-CCCChHHhcC-----CCC
Confidence 110 00 111221124789999999998833 33 378899999999999854 4443333332 889
Q ss_pred cceEecccccccccccccCCCCcccccCCcccEEeeecCcccccCCC----CCCCCccEEEEeccCCcccccCCCCCccE
Q 003899 380 LETLSFSDMREWEEWIPCGAGQEVDEVFPKLRKLSLFNCHKLQGKLP----KRLLLLETLVIKSCQQLLVTIQCLPALSE 455 (788)
Q Consensus 380 L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~lp----~~l~~L~~L~l~~c~~l~~~~~~~~~L~~ 455 (788)
|++|+++++ .+..+.. .....+++|+.|++++| .+. .++ ..+++|+.|++++|... .++.+++|++
T Consensus 316 L~~L~Ls~N-~l~~~~~-----~~~~~l~~L~~L~L~~N-~i~-~~~~~~~~~l~~L~~L~Ls~N~l~--~i~~~~~L~~ 385 (844)
T 3j0a_A 316 LQVLNLSYN-LLGELYS-----SNFYGLPKVAYIDLQKN-HIA-IIQDQTFKFLEKLQTLDLRDNALT--TIHFIPSIPD 385 (844)
T ss_dssp CCEEEEESC-CCSCCCS-----CSCSSCTTCCEEECCSC-CCC-CCCSSCSCSCCCCCEEEEETCCSC--CCSSCCSCSE
T ss_pred CCEEECCCC-CCCccCH-----HHhcCCCCCCEEECCCC-CCC-ccChhhhcCCCCCCEEECCCCCCC--cccCCCCcch
Confidence 999999885 3443321 14556889999999988 565 444 34688899999887543 4555888999
Q ss_pred EEeccCCcceecCCcCCCCccEEeccccccceeecc-ccccCCCCccEEEEecCcccchhhhcccccccCCCCCCeEEcc
Q 003899 456 LQIDGCERVVFSSPIDLSSLKSVHLAYVANEVVLAG-LFEQGLPKLENLVIVEVREQAYLWQSETRLLQDIRSLNRLHIS 534 (788)
Q Consensus 456 L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~ 534 (788)
|++++|....... ...+++.|++++|.. +.++. ..+..+++|+.|++++|....... ...+..+++|++|+++
T Consensus 386 L~l~~N~l~~l~~--~~~~l~~L~ls~N~l-~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~---~~~~~~~~~L~~L~Ls 459 (844)
T 3j0a_A 386 IFLSGNKLVTLPK--INLTANLIHLSENRL-ENLDILYFLLRVPHLQILILNQNRFSSCSG---DQTPSENPSLEQLFLG 459 (844)
T ss_dssp EEEESCCCCCCCC--CCTTCCEEECCSCCC-CSSTTHHHHTTCTTCCEEEEESCCCCCCCS---SSSSCSCTTCCBCEEE
T ss_pred hccCCCCcccccc--cccccceeecccCcc-ccCchhhhhhcCCccceeeCCCCccccccc---ccccccCCccccccCC
Confidence 9999888543322 256788888888653 33322 223578889999999987664431 2235567889999998
Q ss_pred cCCCccccccCc---cccccCCCCcccccceEE-EEEecCccCcccccccccCCCCcceEEEecCCCCcccCCCCCCCCc
Q 003899 535 RCPRLLSLVTDE---EHDQQQPESPYRLRFLEL-KIFIYDLENLQSLPAGLHNLRHLQKIWISKCPNLESFPEEGLPSAK 610 (788)
Q Consensus 535 ~c~~l~~~~~~~---~~~~~~~~~~~~l~~L~L-~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~ 610 (788)
+|. +...+... ..+..+++ | .|++++|......|..+..+++|+.|++++| .++.+|...+. ++
T Consensus 460 ~N~-l~~~~~~~~~~~~~~~l~~---------L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~-~~ 527 (844)
T 3j0a_A 460 ENM-LQLAWETELCWDVFEGLSH---------LQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSN-RLTVLSHNDLP-AN 527 (844)
T ss_dssp SCC-CSSSCCSCCCSSCSSCBCC---------EECCCCCHHHHTTCCTTSSSSCCSCSEEEEESC-CCSSCCCCCCC-SC
T ss_pred CCc-cccccccccchhhhcCccc---------ccEEECCCCcccccChhHccchhhhheeECCCC-CCCccChhhhh-cc
Confidence 864 33222110 00112233 5 6667766433333455677777888888774 66666665555 67
Q ss_pred ccEEEecccccccccccccCccceEeccCCC
Q 003899 611 LTELMIWRCENLKALPNSMSSLLRLGIIGCP 641 (788)
Q Consensus 611 L~~L~l~~c~~l~~l~~~~~~L~~L~l~~c~ 641 (788)
|+.|++++|......|..+.+|+.+++++++
T Consensus 528 L~~L~Ls~N~l~~~~~~~~~~L~~l~l~~Np 558 (844)
T 3j0a_A 528 LEILDISRNQLLAPNPDVFVSLSVLDITHNK 558 (844)
T ss_dssp CCEEEEEEECCCCCCSCCCSSCCEEEEEEEC
T ss_pred ccEEECCCCcCCCCChhHhCCcCEEEecCCC
Confidence 7777777766555555555566666666544
No 12
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=7.5e-32 Score=305.14 Aligned_cols=486 Identities=15% Similarity=0.096 Sum_probs=280.0
Q ss_pred ccCCceeEEEEEccCCccccccccccCCCceeEEEeccCCccccchhhhhHHHHhCCCCCeeEEEccCCcCccccc-ccc
Q 003899 60 KFCQSLRHFSYICGESDGEKRLQSVCDVEHLRTFLPVNLSNYRINYLAWSVLQMLMNLPRLRVFSLHGYSNIIELP-NEI 138 (788)
Q Consensus 60 ~~~~~~r~lsl~~~~~~~~~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~l~~lp-~~~ 138 (788)
..+..++++.+..+.+.... ...+.++++|++|.+.++. +..-.+..|.++++|++|++++| .+..+| ..|
T Consensus 25 ~l~~~l~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~Ls~n~------i~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~ 96 (570)
T 2z63_A 25 NLPFSTKNLDLSFNPLRHLG-SYSFFSFPELQVLDLSRCE------IQTIEDGAYQSLSHLSTLILTGN-PIQSLALGAF 96 (570)
T ss_dssp SSCSSCCEEECCSCCCCEEC-TTTTTTCSSCCEEECTTCC------CCEECTTTTTTCTTCCEEECTTC-CCCEECTTTT
T ss_pred CccccccEEEccCCccCccC-hhHhhCCCCceEEECCCCc------CCccCcccccCchhCCEEeCcCC-cCCccCHhhh
Confidence 35678999999988765433 2467889999999988864 22222347999999999999999 888886 788
Q ss_pred cCCCCCceeeccCCcccccch-hhhccccCcEEEccCccchhh--chhhhhcccCCceEecCCCcCcccCC-ccCcCCCC
Q 003899 139 ENLKHLRFLNLSRTSIQILPE-SINSLYNLNTILLEDCYQLKK--LCNDMGNLKKLRHLKSSNVDSLEEMP-KGFGKLTC 214 (788)
Q Consensus 139 ~~l~~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~~--lp~~i~~L~~L~~L~l~~~~~l~~~p-~~i~~l~~ 214 (788)
+++++|++|++++|.++.+|. .++.+++|++|++++| .+.. +|..++++++|++|++++|. +..++ ..++.+++
T Consensus 97 ~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n-~l~~~~lp~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~ 174 (570)
T 2z63_A 97 SGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHN-LIQSFKLPEYFSNLTNLEHLDLSSNK-IQSIYCTDLRVLHQ 174 (570)
T ss_dssp TTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSS-CCCCCCCCGGGGGCTTCCEEECTTSC-CCEECGGGGHHHHT
T ss_pred cCccccccccccccccccCCCccccccccccEEecCCC-ccceecChhhhcccCCCCEEeCcCCc-cceecHHHccchhc
Confidence 999999999999999999865 6999999999999999 6654 78889999999999999998 55554 55888888
Q ss_pred c----ceeCceEeCCCC--CCCcccccccccCCceeEEeccCCCCCchhhhhcccCCCcCCceEEEEeecCcccCccchh
Q 003899 215 L----LTLGTFVVGKDG--GSGLRELKSLTHLQGTLQISKLENVKDVGDACEAQLNSKENLQALLLKWSTRDVQNLDQCE 288 (788)
Q Consensus 215 L----~~L~~~~~~~~~--~~~~~~l~~L~~L~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~ 288 (788)
| ++|++..+.... ...+.. . .|+ .+.+.... .........+..+.+++.+.+.+...... . .
T Consensus 175 L~~~~~~L~l~~n~l~~~~~~~~~~---~-~L~-~L~l~~n~---~~~~~~~~~~~~l~~l~~~~l~~~~~~~~--~--~ 242 (570)
T 2z63_A 175 MPLLNLSLDLSLNPMNFIQPGAFKE---I-RLH-KLTLRNNF---DSLNVMKTCIQGLAGLEVHRLVLGEFRNE--G--N 242 (570)
T ss_dssp CTTCCCEEECTTCCCCEECTTTTTT---C-EEE-EEEEESCC---SCTTHHHHHHHTTTTCEEEEEEEEECCCC--S--S
T ss_pred cchhhhhcccCCCCceecCHHHhcc---C-cce-eEeccccc---ccccchhhhhcCccccceeeeccccccCc--h--h
Confidence 8 667665544332 111111 1 233 33333211 11122333455566777666655433100 0 0
Q ss_pred hhhhhcccCcccc--ccceEEEEee-C-CCCCCcccCCCCCCCeeEEEECCCCCCCCCC-CCCCCCccEEEecCCCCceE
Q 003899 289 FETHVLSVLKPHQ--DVQELTITGY-G-GTKFPIWLGDSSFSKLARLELCRCTSTSLPS-VGQLPFLMELDISGMDGVKS 363 (788)
Q Consensus 289 ~~~~~~~~l~~~~--~L~~L~l~~~-~-~~~~p~~~~~~~~~~L~~L~L~~~~~~~l~~-l~~l~~L~~L~l~~~~~~~~ 363 (788)
........+..+. .++.+++.++ . ....|.++. .+++|+.|++++|.+..+|. +..+ +|++|++++|... .
T Consensus 243 l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~--~l~~L~~L~l~~~~l~~l~~~~~~~-~L~~L~l~~n~~~-~ 318 (570)
T 2z63_A 243 LEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFN--CLTNVSSFSLVSVTIERVKDFSYNF-GWQHLELVNCKFG-Q 318 (570)
T ss_dssp CEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTG--GGTTCSEEEEESCEECSCCBCCSCC-CCSEEEEESCBCS-S
T ss_pred hhhcchhhhccccccchhhhhhhcchhhhhhchhhhc--CcCcccEEEecCccchhhhhhhccC-CccEEeeccCccc-c
Confidence 0001111122222 2455555544 1 123345554 67888888888888766664 6666 8888888888533 3
Q ss_pred eCcccccCCCCCCCCCcceEecccccccccccccCCCCcccccCCcccEEeeecCcccccCCCCCCCCccEEEEeccCCc
Q 003899 364 VGSEFYRRSCSVPFPSLETLSFSDMREWEEWIPCGAGQEVDEVFPKLRKLSLFNCHKLQGKLPKRLLLLETLVIKSCQQL 443 (788)
Q Consensus 364 ~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~lp~~l~~L~~L~l~~c~~l 443 (788)
++.. .+++|+.|++.++.....+ ....+++|++|++++| .+.+ ++ ..
T Consensus 319 l~~~--------~l~~L~~L~l~~n~~~~~~--------~~~~~~~L~~L~l~~n-~l~~-~~---------------~~ 365 (570)
T 2z63_A 319 FPTL--------KLKSLKRLTFTSNKGGNAF--------SEVDLPSLEFLDLSRN-GLSF-KG---------------CC 365 (570)
T ss_dssp CCBC--------BCSSCCEEEEESCBSCCBC--------CCCBCTTCCEEECCSS-CCBE-EE---------------EE
T ss_pred cCcc--------cccccCEEeCcCCcccccc--------ccccCCCCCEEeCcCC-ccCc-cc---------------cc
Confidence 3221 1667777777664322111 1145667777777666 3331 10 00
Q ss_pred ccccCCCCCccEEEeccCCcce-ecCCcCCCCccEEeccccccceeeccccccCCCCccEEEEecCcccchhhhcccccc
Q 003899 444 LVTIQCLPALSELQIDGCERVV-FSSPIDLSSLKSVHLAYVANEVVLAGLFEQGLPKLENLVIVEVREQAYLWQSETRLL 522 (788)
Q Consensus 444 ~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 522 (788)
...+..+++|++|++++|.... ...+..+++|+.|++++|......+...+..+++|++|++++|...... +..+
T Consensus 366 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~----~~~~ 441 (570)
T 2z63_A 366 SQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAF----NGIF 441 (570)
T ss_dssp EHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECC----TTTT
T ss_pred cccccccCccCEEECCCCccccccccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccc----hhhh
Confidence 1223344555555555554221 1124445555555555544332223233455556666666666555444 4555
Q ss_pred cCCCCCCeEEcccCCCc-cccccCccccccCCCCcccccceEE-EEEecCccCcccccccccCCCCcceEEEecCCCCcc
Q 003899 523 QDIRSLNRLHISRCPRL-LSLVTDEEHDQQQPESPYRLRFLEL-KIFIYDLENLQSLPAGLHNLRHLQKIWISKCPNLES 600 (788)
Q Consensus 523 ~~l~~L~~L~l~~c~~l-~~~~~~~~~~~~~~~~~~~l~~L~L-~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~ 600 (788)
..+++|++|++++|... ..+|.. +..+++ | .+++++|......|..+..+++|++|++++| .++.
T Consensus 442 ~~l~~L~~L~l~~n~l~~~~~p~~---~~~l~~---------L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~ 508 (570)
T 2z63_A 442 NGLSSLEVLKMAGNSFQENFLPDI---FTELRN---------LTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASN-QLKS 508 (570)
T ss_dssp TTCTTCCEEECTTCEEGGGEECSC---CTTCTT---------CCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCSC
T ss_pred hcCCcCcEEECcCCcCccccchhh---hhcccC---------CCEEECCCCccccCChhhhhcccCCCEEeCCCC-cCCC
Confidence 55666666666655321 112211 111222 3 4444443333233445555666666666664 3444
Q ss_pred cCC-CCCCCCcccEEEeccccc
Q 003899 601 FPE-EGLPSAKLTELMIWRCEN 621 (788)
Q Consensus 601 ~~~-~~~~~~~L~~L~l~~c~~ 621 (788)
++. .+..+++|++|++++|+.
T Consensus 509 ~~~~~~~~l~~L~~L~l~~N~~ 530 (570)
T 2z63_A 509 VPDGIFDRLTSLQKIWLHTNPW 530 (570)
T ss_dssp CCTTTTTTCTTCCEEECCSSCB
T ss_pred CCHHHhhcccCCcEEEecCCcc
Confidence 443 234456666666666543
No 13
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=2.6e-31 Score=300.72 Aligned_cols=127 Identities=24% Similarity=0.296 Sum_probs=93.1
Q ss_pred CceeEEEeccCCccccchhhhhHHHHhCCCCCeeEEEccCCcCccccc-ccccCCCCCceeeccCCcccccc-hhhhccc
Q 003899 88 EHLRTFLPVNLSNYRINYLAWSVLQMLMNLPRLRVFSLHGYSNIIELP-NEIENLKHLRFLNLSRTSIQILP-ESINSLY 165 (788)
Q Consensus 88 ~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~l~~lp-~~~~~l~~L~~L~L~~~~i~~lp-~~i~~L~ 165 (788)
++++.|.+.++. +..-.+..|.++++|++|++++| .+..++ ..|+++++|++|+|++|.++.+| ..|+.++
T Consensus 28 ~~l~~L~Ls~n~------l~~~~~~~~~~l~~L~~L~Ls~n-~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 100 (570)
T 2z63_A 28 FSTKNLDLSFNP------LRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLS 100 (570)
T ss_dssp SSCCEEECCSCC------CCEECTTTTTTCSSCCEEECTTC-CCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCT
T ss_pred ccccEEEccCCc------cCccChhHhhCCCCceEEECCCC-cCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCcc
Confidence 467788777653 22222236788888888888888 777775 56788888888888888887774 6788888
Q ss_pred cCcEEEccCccchhhchh-hhhcccCCceEecCCCcCccc--CCccCcCCCCcceeCceEe
Q 003899 166 NLNTILLEDCYQLKKLCN-DMGNLKKLRHLKSSNVDSLEE--MPKGFGKLTCLLTLGTFVV 223 (788)
Q Consensus 166 ~L~~L~L~~~~~l~~lp~-~i~~L~~L~~L~l~~~~~l~~--~p~~i~~l~~L~~L~~~~~ 223 (788)
+|++|++++| .+..+|. .++++++|++|++++|. +.. +|..++++++|++|++.++
T Consensus 101 ~L~~L~L~~n-~l~~l~~~~~~~l~~L~~L~L~~n~-l~~~~lp~~~~~l~~L~~L~l~~n 159 (570)
T 2z63_A 101 SLQKLVAVET-NLASLENFPIGHLKTLKELNVAHNL-IQSFKLPEYFSNLTNLEHLDLSSN 159 (570)
T ss_dssp TCCEEECTTS-CCCCSTTCSCTTCTTCCEEECCSSC-CCCCCCCGGGGGCTTCCEEECTTS
T ss_pred cccccccccc-ccccCCCccccccccccEEecCCCc-cceecChhhhcccCCCCEEeCcCC
Confidence 8888888888 6776665 47888888888888887 443 5777888888888876443
No 14
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.98 E-value=1.8e-31 Score=307.39 Aligned_cols=62 Identities=18% Similarity=0.124 Sum_probs=48.7
Q ss_pred CccccccceEEEEeeCCCCCCc--ccCCCCCCCeeEEEECCCCCCCCCCCCCCCCccEEEecCCCC
Q 003899 297 LKPHQDVQELTITGYGGTKFPI--WLGDSSFSKLARLELCRCTSTSLPSVGQLPFLMELDISGMDG 360 (788)
Q Consensus 297 l~~~~~L~~L~l~~~~~~~~p~--~~~~~~~~~L~~L~L~~~~~~~l~~l~~l~~L~~L~l~~~~~ 360 (788)
+..+++|+.|++++|....+|. ++. .+++|+.|++++|.+..+|.++.+++|+.|++++|..
T Consensus 544 ~~~l~~L~~L~Ls~N~L~~ip~~~~l~--~L~~L~~L~Ls~N~l~~lp~~~~L~~L~~L~Ls~N~l 607 (876)
T 4ecn_A 544 EDTGPKIQIFYMGYNNLEEFPASASLQ--KMVKLGLLDCVHNKVRHLEAFGTNVKLTDLKLDYNQI 607 (876)
T ss_dssp TTTTTTCCEEECCSSCCCBCCCHHHHT--TCTTCCEEECTTSCCCBCCCCCTTSEESEEECCSSCC
T ss_pred ccccCCccEEEeeCCcCCccCChhhhh--cCCCCCEEECCCCCcccchhhcCCCcceEEECcCCcc
Confidence 3445688888888888878887 665 6888888888888887777888888888888888753
No 15
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.98 E-value=4.3e-31 Score=303.39 Aligned_cols=245 Identities=18% Similarity=0.112 Sum_probs=116.7
Q ss_pred CCccEEEEeccCCcccccCCCCCccEEEeccCCcceecCCcCCCCccEEecccccccee-eccccccCCCCccEEEEecC
Q 003899 430 LLLETLVIKSCQQLLVTIQCLPALSELQIDGCERVVFSSPIDLSSLKSVHLAYVANEVV-LAGLFEQGLPKLENLVIVEV 508 (788)
Q Consensus 430 ~~L~~L~l~~c~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~l~~L~~L~l~~~ 508 (788)
..++.|++.+|.........++.|+.+.+.++..........+++|+.++++++..... .....+..+.+|+.+++..+
T Consensus 328 ~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~ 407 (635)
T 4g8a_A 328 FGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFN 407 (635)
T ss_dssp CCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBCCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSC
T ss_pred hhhhhhhcccccccCcCcccchhhhhcccccccCCCCcccccccccccchhhccccccccccccchhhhhhhhhhhcccc
Confidence 44555555554322222233455566666655544444444556666666665443221 11111234455666666555
Q ss_pred cccchhhhcccccccCCCCCCeEEcccCCCccccccCccccccCCCCcccccceEEEEEecCccCcccccccccCCCCcc
Q 003899 509 REQAYLWQSETRLLQDIRSLNRLHISRCPRLLSLVTDEEHDQQQPESPYRLRFLELKIFIYDLENLQSLPAGLHNLRHLQ 588 (788)
Q Consensus 509 ~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~l~~L~L~L~l~~~~~l~~l~~~~~~l~~L~ 588 (788)
..... +..+..+++|+.+++.+++.....+ +..+..+++++
T Consensus 408 ~~~~~-----~~~~~~l~~L~~l~l~~~~~~~~~~----------------------------------~~~~~~l~~l~ 448 (635)
T 4g8a_A 408 GVITM-----SSNFLGLEQLEHLDFQHSNLKQMSE----------------------------------FSVFLSLRNLI 448 (635)
T ss_dssp SEEEE-----CSCCTTCTTCCEEECTTSEEESTTS----------------------------------SCTTTTCTTCC
T ss_pred ccccc-----cccccccccccchhhhhcccccccc----------------------------------ccccccccccc
Confidence 44332 3344555556666555543221111 11234466667
Q ss_pred eEEEecCCCCcccCCCCCCCCcccEEEeccccccccc-ccccCccceEeccCCCCCCCCCCCCCCCCccEEEEeccCCCC
Q 003899 589 KIWISKCPNLESFPEEGLPSAKLTELMIWRCENLKAL-PNSMSSLLRLGIIGCPSLESFPEDGFPTNLQSLEVRDLKITK 667 (788)
Q Consensus 589 ~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~c~~l~~l-~~~~~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~~~~~~ 667 (788)
.+++++|..-...+.....+++|++|++++|.....+ |..+. ..++|++|++++|. +.
T Consensus 449 ~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~--------------------~l~~L~~L~Ls~N~-L~ 507 (635)
T 4g8a_A 449 YLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFT--------------------ELRNLTFLDLSQCQ-LE 507 (635)
T ss_dssp EEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCT--------------------TCTTCCEEECTTSC-CC
T ss_pred cccccccccccccccccccchhhhhhhhhhcccccccCchhhh--------------------hccccCEEECCCCc-cC
Confidence 7777764322222333333555666666555433322 11110 12345555554443 22
Q ss_pred cccccccCCCCCccEEEEcCCCCCcccCCCCCCCCCeEecCCCCCcccchhh-cCCCCCCCceecccCCCCcccCCC---
Q 003899 668 PLLEWGLNRFTSLRNLSIGGGYPDLLSSPPFPASLTELWISDMPDLECLSSI-SENLTSLEFLYLIDCPKLKYFPEQ--- 743 (788)
Q Consensus 668 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~-~~~l~~L~~L~l~~c~~l~~l~~~--- 743 (788)
.+++..|.++++|++|++++ ++++.++.. +..+++|+.|++++| .++.+++.
T Consensus 508 ~l~~~~f~~l~~L~~L~Ls~-----------------------N~l~~l~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~l~ 563 (635)
T 4g8a_A 508 QLSPTAFNSLSSLQVLNMSH-----------------------NNFFSLDTFPYKCLNSLQVLDYSLN-HIMTSKKQELQ 563 (635)
T ss_dssp EECTTTTTTCTTCCEEECTT-----------------------SCCCBCCCGGGTTCTTCCEEECTTS-CCCBCCSSCTT
T ss_pred CcChHHHcCCCCCCEEECCC-----------------------CcCCCCChhHHhCCCCCCEEECCCC-cCCCCCHHHHH
Confidence 33333455666666666665 455555433 556666666666666 45555443
Q ss_pred CCcCCcceEeecCCh
Q 003899 744 GLPKSLSRLSIHNCP 758 (788)
Q Consensus 744 ~~~~~L~~L~i~~c~ 758 (788)
.++++|++|+++++|
T Consensus 564 ~l~~~L~~L~L~~Np 578 (635)
T 4g8a_A 564 HFPSSLAFLNLTQND 578 (635)
T ss_dssp CCCTTCCEEECTTCC
T ss_pred hhhCcCCEEEeeCCC
Confidence 223566666666544
No 16
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.97 E-value=1.9e-31 Score=303.14 Aligned_cols=354 Identities=16% Similarity=0.156 Sum_probs=207.4
Q ss_pred CCcccccchhhhccccCcEEEccCccchhh------------------chhhhh--cccCCceEecCCCcCcccCCccCc
Q 003899 151 RTSIQILPESINSLYNLNTILLEDCYQLKK------------------LCNDMG--NLKKLRHLKSSNVDSLEEMPKGFG 210 (788)
Q Consensus 151 ~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~------------------lp~~i~--~L~~L~~L~l~~~~~l~~~p~~i~ 210 (788)
+|+++.+|.+++++++|++|+|++| .+.. +|..++ ++++|++|++++|.....+|..++
T Consensus 192 ~n~l~~ip~~l~~l~~L~~L~Ls~n-~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~ 270 (636)
T 4eco_A 192 SNNITFVSKAVMRLTKLRQFYMGNS-PFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLK 270 (636)
T ss_dssp SCEEEEECGGGGGCTTCCEEEEESC-CCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTT
T ss_pred cCCCccCCHHHhcccCCCEEECcCC-ccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHh
Confidence 3455556666667777777777666 4444 666666 667777777766665556666666
Q ss_pred CCCCcceeCceEeCCCCCCCcccccccccCCceeEEeccCCCCCchhhhhcccCCCcCCceEEEEeecCcccCccchhhh
Q 003899 211 KLTCLLTLGTFVVGKDGGSGLRELKSLTHLQGTLQISKLENVKDVGDACEAQLNSKENLQALLLKWSTRDVQNLDQCEFE 290 (788)
Q Consensus 211 ~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~ 290 (788)
++++|++|++..+.. . .
T Consensus 271 ~l~~L~~L~Ls~n~~-----------------------------------------------------l----------~ 287 (636)
T 4eco_A 271 ALPEMQLINVACNRG-----------------------------------------------------I----------S 287 (636)
T ss_dssp TCSSCCEEECTTCTT-----------------------------------------------------S----------C
T ss_pred cCCCCCEEECcCCCC-----------------------------------------------------C----------c
Confidence 666666666533210 1 0
Q ss_pred h-hhcc------cCccccccceEEEEeeCCCCCCc--ccCCCCCCCeeEEEECCCCC-CCCCCCCCCCCccEEEecCCCC
Q 003899 291 T-HVLS------VLKPHQDVQELTITGYGGTKFPI--WLGDSSFSKLARLELCRCTS-TSLPSVGQLPFLMELDISGMDG 360 (788)
Q Consensus 291 ~-~~~~------~l~~~~~L~~L~l~~~~~~~~p~--~~~~~~~~~L~~L~L~~~~~-~~l~~l~~l~~L~~L~l~~~~~ 360 (788)
. ..+. .+..+++|+.|+++++....+|. ++. .+++|+.|++++|.+ ..+|.++.+++|++|++++|.
T Consensus 288 ~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~--~l~~L~~L~L~~N~l~g~ip~~~~l~~L~~L~L~~N~- 364 (636)
T 4eco_A 288 GEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQ--KMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQ- 364 (636)
T ss_dssp HHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHT--TCTTCCEEECCSCCCEEECCCCEEEEEESEEECCSSE-
T ss_pred cccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhc--cCCCCCEEeCcCCcCccchhhhCCCCCCCEEECCCCc-
Confidence 0 1111 12334778888888887777887 665 688888888888888 477777888888888888884
Q ss_pred ceEeCcccccCCCCCCCCC-cceEecccccccccccccCCCCcccccCCcccEEeeecCcccccCCCCCCC---------
Q 003899 361 VKSVGSEFYRRSCSVPFPS-LETLSFSDMREWEEWIPCGAGQEVDEVFPKLRKLSLFNCHKLQGKLPKRLL--------- 430 (788)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~lp~~l~--------- 430 (788)
+..++..+.. +++ |++|+++++ .+..++... ....+++|+.|++++| .+.+.+|..++
T Consensus 365 l~~lp~~l~~------l~~~L~~L~Ls~N-~l~~lp~~~----~~~~l~~L~~L~Ls~N-~l~~~~p~~l~~~~~~~~~~ 432 (636)
T 4eco_A 365 ITEIPANFCG------FTEQVENLSFAHN-KLKYIPNIF----DAKSVSVMSAIDFSYN-EIGSVDGKNFDPLDPTPFKG 432 (636)
T ss_dssp EEECCTTSEE------ECTTCCEEECCSS-CCSSCCSCC----CTTCSSCEEEEECCSS-CTTTTTTCSSCTTCSSCCCC
T ss_pred cccccHhhhh------hcccCcEEEccCC-cCcccchhh----hhcccCccCEEECcCC-cCCCcchhhhcccccccccC
Confidence 4455554433 677 888888874 344444300 1122457888888887 56555664333
Q ss_pred -CccEEEEeccCCc--c-cccCCCCCccEEEeccCCcceecC-C-c-------CCCCccEEeccccccceeeccccc-cC
Q 003899 431 -LLETLVIKSCQQL--L-VTIQCLPALSELQIDGCERVVFSS-P-I-------DLSSLKSVHLAYVANEVVLAGLFE-QG 496 (788)
Q Consensus 431 -~L~~L~l~~c~~l--~-~~~~~~~~L~~L~l~~~~~~~~~~-~-~-------~~~~L~~L~l~~~~~~~~~~~~~~-~~ 496 (788)
+|+.|++++|... + ..+..+++|++|++++|.....+. . . .+++|+.|++++|. ++.+|...+ ..
T Consensus 433 ~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~~~ 511 (636)
T 4eco_A 433 INVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNK-LTKLSDDFRATT 511 (636)
T ss_dssp CCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSC-CCBCCGGGSTTT
T ss_pred CCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCc-CCccChhhhhcc
Confidence 5555555554322 1 112235566666666665332111 0 0 11155555555543 224444322 24
Q ss_pred CCCccEEEEecCcccchhhhcccccccCCCCCCeEEcccCCCccccccCccccccCCCCcccccceEEEEEecCccCccc
Q 003899 497 LPKLENLVIVEVREQAYLWQSETRLLQDIRSLNRLHISRCPRLLSLVTDEEHDQQQPESPYRLRFLELKIFIYDLENLQS 576 (788)
Q Consensus 497 l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~l~~L~L~L~l~~~~~l~~ 576 (788)
+++|+.|++++|.... + |..+..+++|++|++++|..+ +++.....
T Consensus 512 l~~L~~L~Ls~N~l~~-i----p~~~~~l~~L~~L~Ls~N~~l-----------------------------s~N~l~~~ 557 (636)
T 4eco_A 512 LPYLVGIDLSYNSFSK-F----PTQPLNSSTLKGFGIRNQRDA-----------------------------QGNRTLRE 557 (636)
T ss_dssp CTTCCEEECCSSCCSS-C----CCGGGGCSSCCEEECCSCBCT-----------------------------TCCBCCCC
T ss_pred CCCcCEEECCCCCCCC-c----ChhhhcCCCCCEEECCCCccc-----------------------------ccCccccc
Confidence 5555555555555444 3 444555555555555443211 12233445
Q ss_pred ccccccCCCCcceEEEecCCCCcccCCCCCCCCcccEEEeccccc
Q 003899 577 LPAGLHNLRHLQKIWISKCPNLESFPEEGLPSAKLTELMIWRCEN 621 (788)
Q Consensus 577 l~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~c~~ 621 (788)
+|..+..+++|++|++++| .++.+|.... ++|++|++++|+.
T Consensus 558 ~p~~l~~l~~L~~L~Ls~N-~l~~ip~~~~--~~L~~L~Ls~N~l 599 (636)
T 4eco_A 558 WPEGITLCPSLTQLQIGSN-DIRKVNEKIT--PNISVLDIKDNPN 599 (636)
T ss_dssp CCTTGGGCSSCCEEECCSS-CCCBCCSCCC--TTCCEEECCSCTT
T ss_pred ChHHHhcCCCCCEEECCCC-cCCccCHhHh--CcCCEEECcCCCC
Confidence 6667777888888888885 4477777654 6788888887753
No 17
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.97 E-value=1e-30 Score=294.17 Aligned_cols=452 Identities=17% Similarity=0.163 Sum_probs=260.6
Q ss_pred CceeEEEeccCCccccchhhhhHHHHhCCCCCeeEEEccCCcCccccc-ccccCCCCCceeeccCCcccccch-hhhccc
Q 003899 88 EHLRTFLPVNLSNYRINYLAWSVLQMLMNLPRLRVFSLHGYSNIIELP-NEIENLKHLRFLNLSRTSIQILPE-SINSLY 165 (788)
Q Consensus 88 ~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~l~~lp-~~~~~l~~L~~L~L~~~~i~~lp~-~i~~L~ 165 (788)
++|++|.+.++. +....|..|.++++|++|++++| .+..++ ..|+++++|++|+|++|.+..+|. .++.++
T Consensus 26 ~~L~~L~Ls~n~------l~~~~~~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 98 (549)
T 2z81_A 26 AAMKSLDLSFNK------ITYIGHGDLRACANLQVLILKSS-RINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLS 98 (549)
T ss_dssp TTCCEEECCSSC------CCEECSSTTSSCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCT
T ss_pred CCccEEECcCCc------cCccChhhhhcCCcccEEECCCC-CcCccChhhccccccCCEEECCCCccCccCHHHhccCC
Confidence 689999998864 32333447999999999999999 888876 789999999999999999998865 599999
Q ss_pred cCcEEEccCccchhh--chhhhhcccCCceEecCCCcCcccCCc-cCcCCCCcceeCceEeCCCCCCCcccccccccCCc
Q 003899 166 NLNTILLEDCYQLKK--LCNDMGNLKKLRHLKSSNVDSLEEMPK-GFGKLTCLLTLGTFVVGKDGGSGLRELKSLTHLQG 242 (788)
Q Consensus 166 ~L~~L~L~~~~~l~~--lp~~i~~L~~L~~L~l~~~~~l~~~p~-~i~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~ 242 (788)
+|++|++++| .+.. .|..++++++|++|++++|..+..+|. .++++++|++|++.++...+.
T Consensus 99 ~L~~L~Ls~n-~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~-------------- 163 (549)
T 2z81_A 99 SLKYLNLMGN-PYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNY-------------- 163 (549)
T ss_dssp TCCEEECTTC-CCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEE--------------
T ss_pred CCcEEECCCC-cccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCccccc--------------
Confidence 9999999999 6664 466799999999999999986777874 699999999999877643220
Q ss_pred eeEEeccCCCCCchhhhhcccCCCcCCceEEEEeecCcccCccchhhhhhhcccCccccccceEEEEeeCCCCC---Ccc
Q 003899 243 TLQISKLENVKDVGDACEAQLNSKENLQALLLKWSTRDVQNLDQCEFETHVLSVLKPHQDVQELTITGYGGTKF---PIW 319 (788)
Q Consensus 243 ~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~---p~~ 319 (788)
....+..+++|+.|+++++.. .......+..+++|+.|+++++....+ |.+
T Consensus 164 ----------------~~~~l~~l~~L~~L~l~~n~~----------~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 217 (549)
T 2z81_A 164 ----------------QSQSLKSIRDIHHLTLHLSES----------AFLLEIFADILSSVRYLELRDTNLARFQFSPLP 217 (549)
T ss_dssp ----------------CTTTTTTCSEEEEEEEECSBS----------TTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCS
T ss_pred ----------------ChhhhhccccCceEecccCcc----------cccchhhHhhcccccEEEccCCccccccccccc
Confidence 011244455666777766554 111111123457788888888776654 222
Q ss_pred cCCCCCCCeeEEEECCCCC-CC----CC-CCCCCCCccEEEecCCCCceEeCccc-ccCCCCCCCCCcceEecccccccc
Q 003899 320 LGDSSFSKLARLELCRCTS-TS----LP-SVGQLPFLMELDISGMDGVKSVGSEF-YRRSCSVPFPSLETLSFSDMREWE 392 (788)
Q Consensus 320 ~~~~~~~~L~~L~L~~~~~-~~----l~-~l~~l~~L~~L~l~~~~~~~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~l~ 392 (788)
+. ..+++|+.|++++|.+ .. ++ .+..+++|+.+++++|... .++... ........+++|+.|.+.++. +.
T Consensus 218 ~~-~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~-~~~~~~~~~~~~~~~l~~L~~L~l~~~~-i~ 294 (549)
T 2z81_A 218 VD-EVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLN-GLGDFNPSESDVVSELGKVETVTIRRLH-IP 294 (549)
T ss_dssp SC-CCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEE-CCSCCCCCTTTCCCCCTTCCEEEEESCB-CS
T ss_pred hh-hhhhcccceeccccccchhHHHHHHHHhhhhcccccccccccccc-ccccccccchhhhhhhcccccccccccc-cc
Confidence 22 2467888888888766 11 11 2456778888888887422 111100 000112236667777766542 11
Q ss_pred cccccCCCCcccccCCcccEEeeecCcccccCCCC----CCCCccEEEEeccCCcc------cccCCCCCccEEEeccCC
Q 003899 393 EWIPCGAGQEVDEVFPKLRKLSLFNCHKLQGKLPK----RLLLLETLVIKSCQQLL------VTIQCLPALSELQIDGCE 462 (788)
Q Consensus 393 ~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~lp~----~l~~L~~L~l~~c~~l~------~~~~~~~~L~~L~l~~~~ 462 (788)
.+....+-......+++|++|++++| .+. .+|. .+++|++|++++|.... ..+..+++|++|++++|.
T Consensus 295 ~~~~~~~l~~~~~~~~~L~~L~l~~n-~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~ 372 (549)
T 2z81_A 295 QFYLFYDLSTVYSLLEKVKRITVENS-KVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNH 372 (549)
T ss_dssp CGGGSCCCCHHHHHSTTCCEEEEESS-CCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSC
T ss_pred hhhhcccchhhhhhcccceEEEeccC-ccc-cCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCc
Confidence 11100000001123466777777776 454 5552 34555555555544321 113344455555555544
Q ss_pred cceecCCcCCCCccEEeccccccceeecc--ccccCCCCccEEEEecCcccchhhhcccccccCCCCCCeEEcccCCCcc
Q 003899 463 RVVFSSPIDLSSLKSVHLAYVANEVVLAG--LFEQGLPKLENLVIVEVREQAYLWQSETRLLQDIRSLNRLHISRCPRLL 540 (788)
Q Consensus 463 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~--~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~ 540 (788)
. +.++. ..+..+++|++|++++|... .+ +..+..+++|++|++++|. +.
T Consensus 373 l-----------------------~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l----p~~~~~~~~L~~L~Ls~N~-l~ 423 (549)
T 2z81_A 373 L-----------------------RSMQKTGEILLTLKNLTSLDISRNTFH-PM----PDSCQWPEKMRFLNLSSTG-IR 423 (549)
T ss_dssp C-----------------------CCHHHHHHHGGGCTTCCEEECTTCCCC-CC----CSCCCCCTTCCEEECTTSC-CS
T ss_pred c-----------------------cccccchhhhhcCCCCCEEECCCCCCc-cC----ChhhcccccccEEECCCCC-cc
Confidence 2 22211 12344455555555555433 22 4444445555555555543 33
Q ss_pred ccccCccccccCCCCcccccceEE-EEEecCccCcccccccccCCCCcceEEEecCCCCcccCCCCCCCCcccEEEeccc
Q 003899 541 SLVTDEEHDQQQPESPYRLRFLEL-KIFIYDLENLQSLPAGLHNLRHLQKIWISKCPNLESFPEEGLPSAKLTELMIWRC 619 (788)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~l~~L~L-~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~c 619 (788)
.++.. ..++ | .+++++|. ++.+ ...+++|++|++++| .++.+|.. ..+++|++|++++|
T Consensus 424 ~l~~~-----~~~~---------L~~L~Ls~N~-l~~~---~~~l~~L~~L~Ls~N-~l~~ip~~-~~l~~L~~L~Ls~N 483 (549)
T 2z81_A 424 VVKTC-----IPQT---------LEVLDVSNNN-LDSF---SLFLPRLQELYISRN-KLKTLPDA-SLFPVLLVMKISRN 483 (549)
T ss_dssp CCCTT-----SCTT---------CSEEECCSSC-CSCC---CCCCTTCCEEECCSS-CCSSCCCG-GGCTTCCEEECCSS
T ss_pred cccch-----hcCC---------ceEEECCCCC-hhhh---cccCChhcEEECCCC-ccCcCCCc-ccCccCCEEecCCC
Confidence 33222 1112 4 45555442 2222 134556666666664 44555542 33556666666665
Q ss_pred cccccccc---ccCccceEeccCCC
Q 003899 620 ENLKALPN---SMSSLLRLGIIGCP 641 (788)
Q Consensus 620 ~~l~~l~~---~~~~L~~L~l~~c~ 641 (788)
......|. .+++|+.|++++|+
T Consensus 484 ~l~~~~~~~~~~l~~L~~L~l~~N~ 508 (549)
T 2z81_A 484 QLKSVPDGIFDRLTSLQKIWLHTNP 508 (549)
T ss_dssp CCCCCCTTGGGGCTTCCEEECCSSC
T ss_pred ccCCcCHHHHhcCcccCEEEecCCC
Confidence 33222222 22356666666654
No 18
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.97 E-value=1.2e-29 Score=283.26 Aligned_cols=423 Identities=15% Similarity=0.115 Sum_probs=201.3
Q ss_pred CCeeEEEccCCcCccccc-ccccCCCCCceeeccCCccccc-chhhhccccCcEEEccCccchhhchhhhhcccCCceEe
Q 003899 118 PRLRVFSLHGYSNIIELP-NEIENLKHLRFLNLSRTSIQIL-PESINSLYNLNTILLEDCYQLKKLCNDMGNLKKLRHLK 195 (788)
Q Consensus 118 ~~Lr~L~L~~~~~l~~lp-~~~~~l~~L~~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~ 195 (788)
++|++|++++| .+..++ ..|.++++|++|+|++|.++.+ |..|+.+++|++|++++| .+..+|.. .+++|++|+
T Consensus 21 ~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~~--~l~~L~~L~ 96 (520)
T 2z7x_B 21 QKTTILNISQN-YISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN-KLVKISCH--PTVNLKHLD 96 (520)
T ss_dssp TTCSEEECCSS-CCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSS-CCCEEECC--CCCCCSEEE
T ss_pred ccccEEECCCC-cccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCC-ceeecCcc--ccCCccEEe
Confidence 56666666666 555554 4556666666666666666655 455666666666666666 55556554 566666666
Q ss_pred cCCCcCccc--CCccCcCCCCcceeCceEeCCCCCCCcccccccccCCceeEEeccCCCCCchhhhhcccCCCcCC--ce
Q 003899 196 SSNVDSLEE--MPKGFGKLTCLLTLGTFVVGKDGGSGLRELKSLTHLQGTLQISKLENVKDVGDACEAQLNSKENL--QA 271 (788)
Q Consensus 196 l~~~~~l~~--~p~~i~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~~~~~~~~~~~~~~~~~~l~~~~~L--~~ 271 (788)
+++|. +.. +|..++++++|++|++.++.... ..+..+++| +.
T Consensus 97 L~~N~-l~~~~~p~~~~~l~~L~~L~L~~n~l~~---------------------------------~~~~~l~~L~L~~ 142 (520)
T 2z7x_B 97 LSFNA-FDALPICKEFGNMSQLKFLGLSTTHLEK---------------------------------SSVLPIAHLNISK 142 (520)
T ss_dssp CCSSC-CSSCCCCGGGGGCTTCCEEEEEESSCCG---------------------------------GGGGGGTTSCEEE
T ss_pred ccCCc-cccccchhhhccCCcceEEEecCcccch---------------------------------hhccccccceeeE
Confidence 66665 333 34556666666666554432211 011222333 55
Q ss_pred EEEEeecCcccCccchhhhhhhcccCccccc-cceEEEEeeCCCC-CCcccCCCCCCCeeEEEECCCC-------C-CCC
Q 003899 272 LLLKWSTRDVQNLDQCEFETHVLSVLKPHQD-VQELTITGYGGTK-FPIWLGDSSFSKLARLELCRCT-------S-TSL 341 (788)
Q Consensus 272 L~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~-L~~L~l~~~~~~~-~p~~~~~~~~~~L~~L~L~~~~-------~-~~l 341 (788)
|+++++... .....+..+..+.. ...+++.++.... ++.... ..+++|+.+++++|. . ..+
T Consensus 143 L~l~~n~l~--------~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~-~~l~~L~~L~l~~n~~~~~~~~~~~~~ 213 (520)
T 2z7x_B 143 VLLVLGETY--------GEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSV-KTVANLELSNIKCVLEDNKCSYFLSIL 213 (520)
T ss_dssp EEEEECTTT--------TSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCC-TTCSEEEECCEEECCSTTTTHHHHHHH
T ss_pred EEeeccccc--------ccccccccccccccceEEEEeccCcchhhhhhhhh-hcccceeeccccccccccccceeecch
Confidence 666554320 00111122222211 1122222222211 111111 135566666666554 2 333
Q ss_pred CCCCCCCCccEEEecCCCCceEeCcccccCCCCCCCCCcceEecccccccccccccCCCCccc-----ccCCcccEEeee
Q 003899 342 PSVGQLPFLMELDISGMDGVKSVGSEFYRRSCSVPFPSLETLSFSDMREWEEWIPCGAGQEVD-----EVFPKLRKLSLF 416 (788)
Q Consensus 342 ~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~-----~~~~~L~~L~l~ 416 (788)
|.++.+++|+.|++++|............. ...++|++|+++++.--..++. .. ..+++|+.++++
T Consensus 214 ~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~---~~~~~L~~L~l~~n~l~~~~p~------~~~~~~~~~l~~L~~l~l~ 284 (520)
T 2z7x_B 214 AKLQTNPKLSNLTLNNIETTWNSFIRILQL---VWHTTVWYFSISNVKLQGQLDF------RDFDYSGTSLKALSIHQVV 284 (520)
T ss_dssp HGGGGCTTCCEEEEEEEEEEHHHHHHHHHH---HHTSSCSEEEEEEEEEESCCCC------CCCCCCSCCCCEEEEEEEE
T ss_pred hhhccccchhhccccccccCHHHHHHHHHH---hhhCcccEEEeecccccCcccc------chhhcccccCceeEecccc
Confidence 445555666666665543111100000000 0034566666665432112222 11 445666666666
Q ss_pred cCcccccCCCC-C------CCCccEEEEeccCCccccc-CCCCCccEEEeccCCcce--ecCCcCCCCccEEeccccccc
Q 003899 417 NCHKLQGKLPK-R------LLLLETLVIKSCQQLLVTI-QCLPALSELQIDGCERVV--FSSPIDLSSLKSVHLAYVANE 486 (788)
Q Consensus 417 ~c~~l~~~lp~-~------l~~L~~L~l~~c~~l~~~~-~~~~~L~~L~l~~~~~~~--~~~~~~~~~L~~L~l~~~~~~ 486 (788)
+|. + .+|. . -.+|+.|++++|......+ ..+++|++|++++|.... +..+..+++|+.|++++|..
T Consensus 285 ~n~-~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l- 360 (520)
T 2z7x_B 285 SDV-F--GFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQL- 360 (520)
T ss_dssp ECC-C--CSCTHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCC-
T ss_pred ccc-e--ecchhhhhcccccCceeEEEcCCCccccccchhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCcc-
Confidence 552 2 2331 0 0346666666655433332 456666666666665322 34445566666666666543
Q ss_pred eeecc--ccccCCCCccEEEEecCcccchhhhcccccccCCCCCCeEEcccCCCccccccCccccccC-CCCcccccceE
Q 003899 487 VVLAG--LFEQGLPKLENLVIVEVREQAYLWQSETRLLQDIRSLNRLHISRCPRLLSLVTDEEHDQQQ-PESPYRLRFLE 563 (788)
Q Consensus 487 ~~~~~--~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~-~~~~~~l~~L~ 563 (788)
+.++. ..+..+++|+.|++++|.....+- ...+..+++|++|++++|.....++.. + ++
T Consensus 361 ~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~---~~~~~~l~~L~~L~Ls~N~l~~~~~~~------l~~~--------- 422 (520)
T 2z7x_B 361 KELSKIAEMTTQMKSLQQLDISQNSVSYDEK---KGDCSWTKSLLSLNMSSNILTDTIFRC------LPPR--------- 422 (520)
T ss_dssp CBHHHHHHHHTTCTTCCEEECCSSCCBCCGG---GCSCCCCTTCCEEECCSSCCCGGGGGS------CCTT---------
T ss_pred CccccchHHHhhCCCCCEEECCCCcCCcccc---cchhccCccCCEEECcCCCCCcchhhh------hccc---------
Confidence 22211 123556666666666666554220 223555666666666665432332222 2 12
Q ss_pred E-EEEecCccCcccccccccCCCCcceEEEecCCCCcccCCC-CCCCCcccEEEecccc
Q 003899 564 L-KIFIYDLENLQSLPAGLHNLRHLQKIWISKCPNLESFPEE-GLPSAKLTELMIWRCE 620 (788)
Q Consensus 564 L-~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~~~~~-~~~~~~L~~L~l~~c~ 620 (788)
| .+++++| .++.+|..+..+++|++|++++| .++.+|.. +..+++|++|++++|+
T Consensus 423 L~~L~Ls~N-~l~~ip~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~l~~N~ 479 (520)
T 2z7x_B 423 IKVLDLHSN-KIKSIPKQVVKLEALQELNVASN-QLKSVPDGIFDRLTSLQKIWLHTNP 479 (520)
T ss_dssp CCEEECCSS-CCCCCCGGGGGCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCEEECCCC-cccccchhhhcCCCCCEEECCCC-cCCccCHHHhccCCcccEEECcCCC
Confidence 4 5555554 33455555555666666666663 44455554 3345555666655554
No 19
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.97 E-value=4e-30 Score=296.19 Aligned_cols=204 Identities=17% Similarity=0.174 Sum_probs=110.6
Q ss_pred HHHHhCCCCCeeEEEccCCcCccc------------------cccccc--CCCCCceeeccCCccc-ccchhhhccccCc
Q 003899 110 VLQMLMNLPRLRVFSLHGYSNIIE------------------LPNEIE--NLKHLRFLNLSRTSIQ-ILPESINSLYNLN 168 (788)
Q Consensus 110 ~~~~~~~l~~Lr~L~L~~~~~l~~------------------lp~~~~--~l~~L~~L~L~~~~i~-~lp~~i~~L~~L~ 168 (788)
+|..|.++++|++|+|++| .+.. +|..++ ++++|++|+|++|.+. .+|..+++|++|+
T Consensus 440 IP~~l~~L~~L~~L~Ls~N-~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~ 518 (876)
T 4ecn_A 440 ISKAIQRLTKLQIIYFANS-PFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQ 518 (876)
T ss_dssp ECGGGGGCTTCCEEEEESC-CCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCC
T ss_pred hhHHHhcCCCCCEEECcCC-cCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCC
Confidence 4445666666666666666 5555 666555 6666666666666543 4566666666666
Q ss_pred EEEccCccchh--hchhhhhccc-------CCceEecCCCcCcccCCc--cCcCCCCcceeCceEeCCCCCCCccccccc
Q 003899 169 TILLEDCYQLK--KLCNDMGNLK-------KLRHLKSSNVDSLEEMPK--GFGKLTCLLTLGTFVVGKDGGSGLRELKSL 237 (788)
Q Consensus 169 ~L~L~~~~~l~--~lp~~i~~L~-------~L~~L~l~~~~~l~~~p~--~i~~l~~L~~L~~~~~~~~~~~~~~~l~~L 237 (788)
+|+|++|..+. .+|..++.++ +|++|++++|. +..+|. .++++++|++|++.++... .++
T Consensus 519 ~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~-L~~ip~~~~l~~L~~L~~L~Ls~N~l~------~lp-- 589 (876)
T 4ecn_A 519 SLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNN-LEEFPASASLQKMVKLGLLDCVHNKVR------HLE-- 589 (876)
T ss_dssp EEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSC-CCBCCCHHHHTTCTTCCEEECTTSCCC------BCC--
T ss_pred EEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCc-CCccCChhhhhcCCCCCEEECCCCCcc------cch--
Confidence 66666663133 4666555555 66666666666 456666 5666666666665333211 000
Q ss_pred ccCCceeEEeccCCCCCchhhhhcccCCCcCCceEEEEeecCcccCccchhhhhhhcccCccccc-cceEEEEeeCCCCC
Q 003899 238 THLQGTLQISKLENVKDVGDACEAQLNSKENLQALLLKWSTRDVQNLDQCEFETHVLSVLKPHQD-VQELTITGYGGTKF 316 (788)
Q Consensus 238 ~~L~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~-L~~L~l~~~~~~~~ 316 (788)
.+..+++|+.|+++++.. . .++..+..+++ |+.|++++|....+
T Consensus 590 ------------------------~~~~L~~L~~L~Ls~N~l----------~-~lp~~l~~l~~~L~~L~Ls~N~L~~l 634 (876)
T 4ecn_A 590 ------------------------AFGTNVKLTDLKLDYNQI----------E-EIPEDFCAFTDQVEGLGFSHNKLKYI 634 (876)
T ss_dssp ------------------------CCCTTSEESEEECCSSCC----------S-CCCTTSCEECTTCCEEECCSSCCCSC
T ss_pred ------------------------hhcCCCcceEEECcCCcc----------c-cchHHHhhccccCCEEECcCCCCCcC
Confidence 133344555555555444 1 23334555555 66666666665556
Q ss_pred CcccCCCCCCCeeEEEECCCCC-CCCCCCC------CCCCccEEEecCC
Q 003899 317 PIWLGDSSFSKLARLELCRCTS-TSLPSVG------QLPFLMELDISGM 358 (788)
Q Consensus 317 p~~~~~~~~~~L~~L~L~~~~~-~~l~~l~------~l~~L~~L~l~~~ 358 (788)
|.++.....++|+.|++++|.+ ..+|.+. .+++|+.|++++|
T Consensus 635 p~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N 683 (876)
T 4ecn_A 635 PNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYN 683 (876)
T ss_dssp CSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSS
T ss_pred chhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCC
Confidence 6555432334466666666655 3333221 2335555555555
No 20
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.97 E-value=7.4e-31 Score=298.22 Aligned_cols=228 Identities=16% Similarity=0.221 Sum_probs=157.5
Q ss_pred HHHHhCCCCCeeEEEccCCcCccc------------------cccccc--CCCCCceeeccCCccc-ccchhhhccccCc
Q 003899 110 VLQMLMNLPRLRVFSLHGYSNIIE------------------LPNEIE--NLKHLRFLNLSRTSIQ-ILPESINSLYNLN 168 (788)
Q Consensus 110 ~~~~~~~l~~Lr~L~L~~~~~l~~------------------lp~~~~--~l~~L~~L~L~~~~i~-~lp~~i~~L~~L~ 168 (788)
+|..|.++++|++|+|++| .+.. +|..++ ++++|++|+|++|.+. .+|..++++++|+
T Consensus 198 ip~~l~~l~~L~~L~Ls~n-~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~ 276 (636)
T 4eco_A 198 VSKAVMRLTKLRQFYMGNS-PFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQ 276 (636)
T ss_dssp ECGGGGGCTTCCEEEEESC-CCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCC
T ss_pred CCHHHhcccCCCEEECcCC-ccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCC
Confidence 5667888888888888888 6776 888877 8888888888888765 6688888888888
Q ss_pred EEEccCccchh--hchhhhhcc------cCCceEecCCCcCcccCCc--cCcCCCCcceeCceEeCCCCCCCcccccccc
Q 003899 169 TILLEDCYQLK--KLCNDMGNL------KKLRHLKSSNVDSLEEMPK--GFGKLTCLLTLGTFVVGKDGGSGLRELKSLT 238 (788)
Q Consensus 169 ~L~L~~~~~l~--~lp~~i~~L------~~L~~L~l~~~~~l~~~p~--~i~~l~~L~~L~~~~~~~~~~~~~~~l~~L~ 238 (788)
+|++++|..+. .+|..++.+ ++|++|++++|. +..+|. .++.+++|++|++.++...+ .++
T Consensus 277 ~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~-l~~ip~~~~l~~l~~L~~L~L~~N~l~g-----~ip--- 347 (636)
T 4eco_A 277 LINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNN-LKTFPVETSLQKMKKLGMLECLYNQLEG-----KLP--- 347 (636)
T ss_dssp EEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSC-CSSCCCHHHHTTCTTCCEEECCSCCCEE-----ECC---
T ss_pred EEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCc-CCccCchhhhccCCCCCEEeCcCCcCcc-----chh---
Confidence 88888884244 588888776 888888888887 668887 78888888888775443210 000
Q ss_pred cCCceeEEeccCCCCCchhhhhcccCCCcCCceEEEEeecCcccCccchhhhhhhcccCccccc-cceEEEEeeCCCCCC
Q 003899 239 HLQGTLQISKLENVKDVGDACEAQLNSKENLQALLLKWSTRDVQNLDQCEFETHVLSVLKPHQD-VQELTITGYGGTKFP 317 (788)
Q Consensus 239 ~L~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~-L~~L~l~~~~~~~~p 317 (788)
.+..+++|+.|+++++.. . .++..+..+++ |+.|++++|....+|
T Consensus 348 -----------------------~~~~l~~L~~L~L~~N~l----------~-~lp~~l~~l~~~L~~L~Ls~N~l~~lp 393 (636)
T 4eco_A 348 -----------------------AFGSEIKLASLNLAYNQI----------T-EIPANFCGFTEQVENLSFAHNKLKYIP 393 (636)
T ss_dssp -----------------------CCEEEEEESEEECCSSEE----------E-ECCTTSEEECTTCCEEECCSSCCSSCC
T ss_pred -----------------------hhCCCCCCCEEECCCCcc----------c-cccHhhhhhcccCcEEEccCCcCcccc
Confidence 133345666666665554 1 34455666777 888888888877778
Q ss_pred cccCCCCCCCeeEEEECCCCC-CCCCC-CC-------CCCCccEEEecCCCCceEeCcccccCCCCCCCCCcceEeccc
Q 003899 318 IWLGDSSFSKLARLELCRCTS-TSLPS-VG-------QLPFLMELDISGMDGVKSVGSEFYRRSCSVPFPSLETLSFSD 387 (788)
Q Consensus 318 ~~~~~~~~~~L~~L~L~~~~~-~~l~~-l~-------~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 387 (788)
.++....+++|+.|++++|.+ ...|. +. .+++|++|++++|. +..++...+.. +++|++|++++
T Consensus 394 ~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~-l~~lp~~~~~~-----l~~L~~L~Ls~ 466 (636)
T 4eco_A 394 NIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQ-ISKFPKELFST-----GSPLSSINLMG 466 (636)
T ss_dssp SCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSC-CCSCCTHHHHT-----TCCCSEEECCS
T ss_pred hhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCc-cCcCCHHHHcc-----CCCCCEEECCC
Confidence 777644455788888888887 44443 55 56677888887774 33444443322 56666666665
No 21
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.97 E-value=1.8e-29 Score=281.67 Aligned_cols=454 Identities=15% Similarity=0.147 Sum_probs=275.6
Q ss_pred eEEEEEccCCccccccccccCCCceeEEEeccCCccccchhhhhHHHHhCCCCCeeEEEccCCcCcccc-cccccCCCCC
Q 003899 66 RHFSYICGESDGEKRLQSVCDVEHLRTFLPVNLSNYRINYLAWSVLQMLMNLPRLRVFSLHGYSNIIEL-PNEIENLKHL 144 (788)
Q Consensus 66 r~lsl~~~~~~~~~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~l~~l-p~~~~~l~~L 144 (788)
+.+.+..+...... ..+. ++++.|.+.++. +....|..|.++++|++|++++| .+..+ |..|+++++|
T Consensus 3 ~~l~ls~n~l~~ip--~~~~--~~L~~L~Ls~n~------i~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L 71 (520)
T 2z7x_B 3 FLVDRSKNGLIHVP--KDLS--QKTTILNISQNY------ISELWTSDILSLSKLRILIISHN-RIQYLDISVFKFNQEL 71 (520)
T ss_dssp CEEECTTSCCSSCC--CSCC--TTCSEEECCSSC------CCCCCHHHHTTCTTCCEEECCSS-CCCEEEGGGGTTCTTC
T ss_pred ceEecCCCCccccc--cccc--ccccEEECCCCc------ccccChhhccccccccEEecCCC-ccCCcChHHhhcccCC
Confidence 45555555544322 2222 789999888864 33344558999999999999999 88887 6789999999
Q ss_pred ceeeccCCcccccchhhhccccCcEEEccCccchhh--chhhhhcccCCceEecCCCcCcccCCccCcCCCCc--ceeCc
Q 003899 145 RFLNLSRTSIQILPESINSLYNLNTILLEDCYQLKK--LCNDMGNLKKLRHLKSSNVDSLEEMPKGFGKLTCL--LTLGT 220 (788)
Q Consensus 145 ~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~--lp~~i~~L~~L~~L~l~~~~~l~~~p~~i~~l~~L--~~L~~ 220 (788)
++|+|++|.|+.+|.. .+++|++|++++| .+.. +|..++++++|++|++++|. +.. ..++.+++| ++|++
T Consensus 72 ~~L~Ls~N~l~~lp~~--~l~~L~~L~L~~N-~l~~~~~p~~~~~l~~L~~L~L~~n~-l~~--~~~~~l~~L~L~~L~l 145 (520)
T 2z7x_B 72 EYLDLSHNKLVKISCH--PTVNLKHLDLSFN-AFDALPICKEFGNMSQLKFLGLSTTH-LEK--SSVLPIAHLNISKVLL 145 (520)
T ss_dssp CEEECCSSCCCEEECC--CCCCCSEEECCSS-CCSSCCCCGGGGGCTTCCEEEEEESS-CCG--GGGGGGTTSCEEEEEE
T ss_pred CEEecCCCceeecCcc--ccCCccEEeccCC-ccccccchhhhccCCcceEEEecCcc-cch--hhccccccceeeEEEe
Confidence 9999999999999877 8999999999999 6654 67889999999999999998 544 457778888 99999
Q ss_pred eEeCCCC-CCCcccccccccCCceeEEeccCCCCCchhhhhcccCCCcCCceEEEEeecCcccCccchhhhhhhcccCcc
Q 003899 221 FVVGKDG-GSGLRELKSLTHLQGTLQISKLENVKDVGDACEAQLNSKENLQALLLKWSTRDVQNLDQCEFETHVLSVLKP 299 (788)
Q Consensus 221 ~~~~~~~-~~~~~~l~~L~~L~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~ 299 (788)
..+.... ......++.+.. + .+.+ .+.............+..+++|+.++++++... ............+..
T Consensus 146 ~~n~l~~~~~~~~~l~~l~~-~-~l~l-~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~----~~~~~~~~~~~~l~~ 218 (520)
T 2z7x_B 146 VLGETYGEKEDPEGLQDFNT-E-SLHI-VFPTNKEFHFILDVSVKTVANLELSNIKCVLED----NKCSYFLSILAKLQT 218 (520)
T ss_dssp EECTTTTSSCCTTTTTTCCE-E-EEEE-ECCSSSCCCCCCCCCCTTCSEEEECCEEECCST----TTTHHHHHHHHGGGG
T ss_pred eccccccccccccccccccc-c-eEEE-EeccCcchhhhhhhhhhcccceeeccccccccc----cccceeecchhhhcc
Confidence 8876521 122233333331 1 2222 111111112223334667788899998887520 001111122336778
Q ss_pred ccccceEEEEeeCCCC-----CCcccCCCCCCCeeEEEECCCCC-CCCCC-C-----CCCCCccEEEecCCCCceEeCcc
Q 003899 300 HQDVQELTITGYGGTK-----FPIWLGDSSFSKLARLELCRCTS-TSLPS-V-----GQLPFLMELDISGMDGVKSVGSE 367 (788)
Q Consensus 300 ~~~L~~L~l~~~~~~~-----~p~~~~~~~~~~L~~L~L~~~~~-~~l~~-l-----~~l~~L~~L~l~~~~~~~~~~~~ 367 (788)
+++|+.|++.++.... ++.+. ..++|+.|++++|.+ ..+|. + +.+++|+.+++++|.. .++..
T Consensus 219 l~~L~~L~l~~~~l~~~~~~~~~~~~---~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~ 293 (520)
T 2z7x_B 219 NPKLSNLTLNNIETTWNSFIRILQLV---WHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQS 293 (520)
T ss_dssp CTTCCEEEEEEEEEEHHHHHHHHHHH---HTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTH
T ss_pred ccchhhccccccccCHHHHHHHHHHh---hhCcccEEEeecccccCccccchhhcccccCceeEeccccccce--ecchh
Confidence 8899999998765431 11122 245899999999988 57775 5 7888899999888754 33311
Q ss_pred cccCCCCCCCCCcceEecccccccccccccCCCCcccccCCcccEEeeecCcccccCCCCCCCCccEEEEeccCCccccc
Q 003899 368 FYRRSCSVPFPSLETLSFSDMREWEEWIPCGAGQEVDEVFPKLRKLSLFNCHKLQGKLPKRLLLLETLVIKSCQQLLVTI 447 (788)
Q Consensus 368 ~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~lp~~l~~L~~L~l~~c~~l~~~~ 447 (788)
.... ...-++|+.|+++++. +.... ....+++|++|++++| .+.+.+|. .+
T Consensus 294 ~~~~--~~~~~~L~~L~l~~n~-l~~~~-------~~~~l~~L~~L~Ls~n-~l~~~~~~------------------~~ 344 (520)
T 2z7x_B 294 YIYE--IFSNMNIKNFTVSGTR-MVHML-------CPSKISPFLHLDFSNN-LLTDTVFE------------------NC 344 (520)
T ss_dssp HHHH--HHHTCCCSEEEEESSC-CCCCC-------CCSSCCCCCEEECCSS-CCCTTTTT------------------TC
T ss_pred hhhc--ccccCceeEEEcCCCc-ccccc-------chhhCCcccEEEeECC-ccChhhhh------------------hh
Confidence 1110 0001457777777643 22211 1135677777777776 45433442 23
Q ss_pred CCCCCccEEEeccCCccee----cCCcCCCCccEEeccccccceeeccccccCCCCccEEEEecCcccchhhhccccccc
Q 003899 448 QCLPALSELQIDGCERVVF----SSPIDLSSLKSVHLAYVANEVVLAGLFEQGLPKLENLVIVEVREQAYLWQSETRLLQ 523 (788)
Q Consensus 448 ~~~~~L~~L~l~~~~~~~~----~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 523 (788)
..+++|++|++++|..... ..+..+++|+.|++++|.....++...+..+++|+.|++++|...... +..+.
T Consensus 345 ~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~----~~~l~ 420 (520)
T 2z7x_B 345 GHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTI----FRCLP 420 (520)
T ss_dssp CCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGG----GGSCC
T ss_pred ccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcch----hhhhc
Confidence 3444555555555543221 123445555555555544333344444455566666666666554433 22221
Q ss_pred CCCCCCeEEcccCCCccccccCccccccCCCCcccccceEE-EEEecCccCccccccc-ccCCCCcceEEEecCCC
Q 003899 524 DIRSLNRLHISRCPRLLSLVTDEEHDQQQPESPYRLRFLEL-KIFIYDLENLQSLPAG-LHNLRHLQKIWISKCPN 597 (788)
Q Consensus 524 ~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~l~~L~L-~L~l~~~~~l~~l~~~-~~~l~~L~~L~l~~c~~ 597 (788)
++|++|++++|. ++.+|.. +..+++ | .+++++| .++.+|.. +..+++|++|++++|+.
T Consensus 421 --~~L~~L~Ls~N~-l~~ip~~---~~~l~~---------L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~l~~N~~ 480 (520)
T 2z7x_B 421 --PRIKVLDLHSNK-IKSIPKQ---VVKLEA---------LQELNVASN-QLKSVPDGIFDRLTSLQKIWLHTNPW 480 (520)
T ss_dssp --TTCCEEECCSSC-CCCCCGG---GGGCTT---------CCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCB
T ss_pred --ccCCEEECCCCc-ccccchh---hhcCCC---------CCEEECCCC-cCCccCHHHhccCCcccEEECcCCCC
Confidence 456666666642 3344432 112333 5 6666654 34456554 77799999999999753
No 22
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.96 E-value=2e-28 Score=281.25 Aligned_cols=496 Identities=17% Similarity=0.152 Sum_probs=276.7
Q ss_pred CceeEEEeccCCccccchhhhhHHH-HhCCCCCeeEEEccCCcCccccc-ccccCCCCCceeeccCCcccccc-hhhhcc
Q 003899 88 EHLRTFLPVNLSNYRINYLAWSVLQ-MLMNLPRLRVFSLHGYSNIIELP-NEIENLKHLRFLNLSRTSIQILP-ESINSL 164 (788)
Q Consensus 88 ~~Lr~L~~~~~~~~~~~~~~~~~~~-~~~~l~~Lr~L~L~~~~~l~~lp-~~~~~l~~L~~L~L~~~~i~~lp-~~i~~L 164 (788)
+.++.|.+.++. + ..++. .|.++++|++|+|++| .+..+| .+|+++++|++|+|++|+|+.+| ..|.+|
T Consensus 52 ~~~~~LdLs~N~------i-~~l~~~~f~~l~~L~~L~Ls~N-~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L 123 (635)
T 4g8a_A 52 FSTKNLDLSFNP------L-RHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGL 123 (635)
T ss_dssp TTCCEEECTTSC------C-CEECTTTTTTCTTCCEEECTTC-CCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTC
T ss_pred cCCCEEEeeCCC------C-CCCCHHHHhCCCCCCEEECCCC-cCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCC
Confidence 367777777653 2 33444 7888888888888888 788876 56788888888888888888876 457888
Q ss_pred ccCcEEEccCccchhhchhh-hhcccCCceEecCCCcCccc--CCccCcCCCCcceeCceEeCCCC--CCCccccccccc
Q 003899 165 YNLNTILLEDCYQLKKLCND-MGNLKKLRHLKSSNVDSLEE--MPKGFGKLTCLLTLGTFVVGKDG--GSGLRELKSLTH 239 (788)
Q Consensus 165 ~~L~~L~L~~~~~l~~lp~~-i~~L~~L~~L~l~~~~~l~~--~p~~i~~l~~L~~L~~~~~~~~~--~~~~~~l~~L~~ 239 (788)
++|++|+|++| .+..+|.. |+++++|++|++++|. +.. +|..++.+++|++|++..+...+ ...+..+.++..
T Consensus 124 ~~L~~L~Ls~N-~l~~l~~~~~~~L~~L~~L~Ls~N~-l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~ 201 (635)
T 4g8a_A 124 SSLQKLVAVET-NLASLENFPIGHLKTLKELNVAHNL-IQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPL 201 (635)
T ss_dssp TTCCEEECTTS-CCCCSTTCCCTTCTTCCEEECCSSC-CCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTT
T ss_pred CCCCEEECCCC-cCCCCChhhhhcCcccCeeccccCc-cccCCCchhhccchhhhhhcccCccccccccccccchhhhhh
Confidence 88888888888 67777664 7888888888888887 543 45667888888888876655433 223333333332
Q ss_pred CCceeEEeccCCCCCchhhhhcccCCCcCCceEEEEeecCcccCccchhhhhhhcccCccccccceEEEEeeCCCC---C
Q 003899 240 LQGTLQISKLENVKDVGDACEAQLNSKENLQALLLKWSTRDVQNLDQCEFETHVLSVLKPHQDVQELTITGYGGTK---F 316 (788)
Q Consensus 240 L~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~---~ 316 (788)
+...+.... ..... ..........+..+.+..+.. . .......+..+..++...+....... +
T Consensus 202 ~~~~~~ls~-n~l~~----i~~~~~~~~~~~~l~l~~n~~------~---~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l 267 (635)
T 4g8a_A 202 LNLSLDLSL-NPMNF----IQPGAFKEIRLHKLTLRNNFD------S---LNVMKTCIQGLAGLEVHRLVLGEFRNEGNL 267 (635)
T ss_dssp CCCEEECTT-CCCCE----ECTTTTTTCEEEEEEEESCCS------S---HHHHHHHHHTTTTCEEEEEEEECCTTSCCC
T ss_pred hhhhhhccc-Ccccc----cCcccccchhhhhhhhhcccc------c---ccccchhhcCCccccccccccccccccccc
Confidence 211111110 00000 001111122344455544332 0 01111223334444444443322111 1
Q ss_pred Cccc--CCCCCCCeeEEEECCCCC-----CCCCCCCCCCCccEEEecCCCCceEeCcccccCCCCCCCCCcceEeccccc
Q 003899 317 PIWL--GDSSFSKLARLELCRCTS-----TSLPSVGQLPFLMELDISGMDGVKSVGSEFYRRSCSVPFPSLETLSFSDMR 389 (788)
Q Consensus 317 p~~~--~~~~~~~L~~L~L~~~~~-----~~l~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 389 (788)
.... .......+....+..+.. .....+..+.+++.+.+.++.. ..+.. + ....+|+.|.+.++.
T Consensus 268 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~-~~~~~-~------~~~~~L~~L~l~~~~ 339 (635)
T 4g8a_A 268 EKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTI-ERVKD-F------SYNFGWQHLELVNCK 339 (635)
T ss_dssp SCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEE-EECGG-G------GSCCCCSEEEEESCE
T ss_pred ccccccccccccchhhhhhhhhhhcccccchhhhhhhhccccccccccccc-ccccc-c------ccchhhhhhhccccc
Confidence 1000 001233444444443332 2222355667778887777642 22221 1 115677778777642
Q ss_pred ccccccccCCCCcccccCCcccEEeeecCcccccCCC-CCCCCccEEEEeccCCc-----ccccCCCCCccEEEeccCCc
Q 003899 390 EWEEWIPCGAGQEVDEVFPKLRKLSLFNCHKLQGKLP-KRLLLLETLVIKSCQQL-----LVTIQCLPALSELQIDGCER 463 (788)
Q Consensus 390 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~lp-~~l~~L~~L~l~~c~~l-----~~~~~~~~~L~~L~l~~~~~ 463 (788)
+..+ ....++.|+.+.+.++. .....+ ..+++|+.++++++... ...+..+.+|+.+++..+..
T Consensus 340 -~~~~--------~~~~l~~L~~l~l~~n~-~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~ 409 (635)
T 4g8a_A 340 -FGQF--------PTLKLKSLKRLTFTSNK-GGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGV 409 (635)
T ss_dssp -ESSC--------CCCBCTTCCEEEEESCC-SCCBCCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSE
T ss_pred -ccCc--------Ccccchhhhhccccccc-CCCCcccccccccccchhhccccccccccccchhhhhhhhhhhcccccc
Confidence 2222 22346778888887763 321222 34566777766664432 12233456677777766663
Q ss_pred ce-ecCCcCCCCccEEeccccccceeeccccccCCCCccEEEEecCcccchhhhcccccccCCCCCCeEEcccCCCcccc
Q 003899 464 VV-FSSPIDLSSLKSVHLAYVANEVVLAGLFEQGLPKLENLVIVEVREQAYLWQSETRLLQDIRSLNRLHISRCPRLLSL 542 (788)
Q Consensus 464 ~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~ 542 (788)
.. ...+..+++|+.+++..++.....+...+..+++++.++++.|...... +..+..+++|+.|++++|.....+
T Consensus 410 ~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~----~~~~~~~~~L~~L~Ls~N~~~~~~ 485 (635)
T 4g8a_A 410 ITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAF----NGIFNGLSSLEVLKMAGNSFQENF 485 (635)
T ss_dssp EEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECC----TTTTTTCTTCCEEECTTCEEGGGE
T ss_pred ccccccccccccccchhhhhcccccccccccccccccccccccccccccccc----ccccccchhhhhhhhhhccccccc
Confidence 32 3334456677777776665555555445566667777777766655554 555666666666666665433322
Q ss_pred ccCccccccCCCCcccccceEEEEEecCccCcccccccccCCCCcceEEEecCCCCccc-CCCCCCCCcccEEEeccccc
Q 003899 543 VTDEEHDQQQPESPYRLRFLELKIFIYDLENLQSLPAGLHNLRHLQKIWISKCPNLESF-PEEGLPSAKLTELMIWRCEN 621 (788)
Q Consensus 543 ~~~~~~~~~~~~~~~~l~~L~L~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~~-~~~~~~~~~L~~L~l~~c~~ 621 (788)
.|..+..+++|+.|++++| .++.+ |..+..+++|++|++++|.
T Consensus 486 ----------------------------------~~~~~~~l~~L~~L~Ls~N-~L~~l~~~~f~~l~~L~~L~Ls~N~- 529 (635)
T 4g8a_A 486 ----------------------------------LPDIFTELRNLTFLDLSQC-QLEQLSPTAFNSLSSLQVLNMSHNN- 529 (635)
T ss_dssp ----------------------------------ECSCCTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTSC-
T ss_pred ----------------------------------CchhhhhccccCEEECCCC-ccCCcChHHHcCCCCCCEEECCCCc-
Confidence 2334555677777777775 44444 3444556777777777754
Q ss_pred ccccc-c---ccCccceEeccCCCCCCCCCCCC---CCCCccEEEEeccCCC
Q 003899 622 LKALP-N---SMSSLLRLGIIGCPSLESFPEDG---FPTNLQSLEVRDLKIT 666 (788)
Q Consensus 622 l~~l~-~---~~~~L~~L~l~~c~~l~~~~~~~---~~~~L~~L~l~~~~~~ 666 (788)
+..++ . .+++|++|+++++ .++.++... ++++|+.|++++|+..
T Consensus 530 l~~l~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~l~~l~~~L~~L~L~~Np~~ 580 (635)
T 4g8a_A 530 FFSLDTFPYKCLNSLQVLDYSLN-HIMTSKKQELQHFPSSLAFLNLTQNDFA 580 (635)
T ss_dssp CCBCCCGGGTTCTTCCEEECTTS-CCCBCCSSCTTCCCTTCCEEECTTCCBC
T ss_pred CCCCChhHHhCCCCCCEEECCCC-cCCCCCHHHHHhhhCcCCEEEeeCCCCc
Confidence 33332 2 2347777777764 455555443 3467888888887654
No 23
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.96 E-value=3.4e-29 Score=271.62 Aligned_cols=334 Identities=22% Similarity=0.199 Sum_probs=148.5
Q ss_pred ccceEEEEeeCCCCCCcccCCCCCCCeeEEEECCCCCCCCCCCCCCCCccEEEecCCCCceEeCcccccCCCCCCCCCcc
Q 003899 302 DVQELTITGYGGTKFPIWLGDSSFSKLARLELCRCTSTSLPSVGQLPFLMELDISGMDGVKSVGSEFYRRSCSVPFPSLE 381 (788)
Q Consensus 302 ~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~L~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~ 381 (788)
+|+.|+++++....+|. .+++|+.|++++|.+..++.+. ++|++|++++|.. ..++ .
T Consensus 92 ~L~~L~l~~n~l~~lp~-----~~~~L~~L~l~~n~l~~l~~~~--~~L~~L~L~~n~l-~~lp-~-------------- 148 (454)
T 1jl5_A 92 HLESLVASCNSLTELPE-----LPQSLKSLLVDNNNLKALSDLP--PLLEYLGVSNNQL-EKLP-E-------------- 148 (454)
T ss_dssp TCSEEECCSSCCSSCCC-----CCTTCCEEECCSSCCSCCCSCC--TTCCEEECCSSCC-SSCC-C--------------
T ss_pred CCCEEEccCCcCCcccc-----ccCCCcEEECCCCccCcccCCC--CCCCEEECcCCCC-CCCc-c--------------
Confidence 34444444444444443 2367788888887775555432 5788888877742 2232 1
Q ss_pred eEecccccccccccccCCCCcccccCCcccEEeeecCcccccCCCCCCCCccEEEEeccCCcc-cccCCCCCccEEEecc
Q 003899 382 TLSFSDMREWEEWIPCGAGQEVDEVFPKLRKLSLFNCHKLQGKLPKRLLLLETLVIKSCQQLL-VTIQCLPALSELQIDG 460 (788)
Q Consensus 382 ~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~lp~~l~~L~~L~l~~c~~l~-~~~~~~~~L~~L~l~~ 460 (788)
.+.+++|++|++++| .+. .+|..+++|++|++++|.... ..+..+++|++|++++
T Consensus 149 ----------------------~~~l~~L~~L~l~~N-~l~-~lp~~~~~L~~L~L~~n~l~~l~~~~~l~~L~~L~l~~ 204 (454)
T 1jl5_A 149 ----------------------LQNSSFLKIIDVDNN-SLK-KLPDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADN 204 (454)
T ss_dssp ----------------------CTTCTTCCEEECCSS-CCS-CCCCCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCS
T ss_pred ----------------------cCCCCCCCEEECCCC-cCc-ccCCCcccccEEECcCCcCCcCccccCCCCCCEEECCC
Confidence 122455555555554 444 344433344444444332110 1233455555555555
Q ss_pred CCcceecCCcCCCCccEEeccccccceeeccccccCCCCccEEEEecCcccchhhhcccccccCCCCCCeEEcccCCCcc
Q 003899 461 CERVVFSSPIDLSSLKSVHLAYVANEVVLAGLFEQGLPKLENLVIVEVREQAYLWQSETRLLQDIRSLNRLHISRCPRLL 540 (788)
Q Consensus 461 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~ 540 (788)
|.... ++. .+++|++|++++|... .+ + .+..+++|++|++++|. +.
T Consensus 205 N~l~~-----------------------l~~----~~~~L~~L~l~~n~l~-~l----p-~~~~l~~L~~L~l~~N~-l~ 250 (454)
T 1jl5_A 205 NSLKK-----------------------LPD----LPLSLESIVAGNNILE-EL----P-ELQNLPFLTTIYADNNL-LK 250 (454)
T ss_dssp SCCSS-----------------------CCC----CCTTCCEEECCSSCCS-SC----C-CCTTCTTCCEEECCSSC-CS
T ss_pred CcCCc-----------------------CCC----CcCcccEEECcCCcCC-cc----c-ccCCCCCCCEEECCCCc-CC
Confidence 54221 221 1235555555555433 22 3 24555555555555532 22
Q ss_pred ccccCccccccCCCCcccccceEE-EEEecCccCcccccccccCCCCcceEEEecCCCCcccCCCCCCCCcccEEEeccc
Q 003899 541 SLVTDEEHDQQQPESPYRLRFLEL-KIFIYDLENLQSLPAGLHNLRHLQKIWISKCPNLESFPEEGLPSAKLTELMIWRC 619 (788)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~l~~L~L-~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~c 619 (788)
.+|.. .++ | .+++.+|. ++.+|.. +++|++|++++| .++.+|.. .++|++|++++|
T Consensus 251 ~l~~~------~~~---------L~~L~l~~N~-l~~l~~~---~~~L~~L~ls~N-~l~~l~~~---~~~L~~L~l~~N 307 (454)
T 1jl5_A 251 TLPDL------PPS---------LEALNVRDNY-LTDLPEL---PQSLTFLDVSEN-IFSGLSEL---PPNLYYLNASSN 307 (454)
T ss_dssp SCCSC------CTT---------CCEEECCSSC-CSCCCCC---CTTCCEEECCSS-CCSEESCC---CTTCCEEECCSS
T ss_pred ccccc------ccc---------cCEEECCCCc-ccccCcc---cCcCCEEECcCC-ccCcccCc---CCcCCEEECcCC
Confidence 22211 111 3 44444432 2334432 367788888875 45555432 257788888776
Q ss_pred ccccccccccCccceEeccCCCCCCCCCCCCCCCCccEEEEeccCCCCcccccccCCCCCccEEEEcCCCCCcccCCCCC
Q 003899 620 ENLKALPNSMSSLLRLGIIGCPSLESFPEDGFPTNLQSLEVRDLKITKPLLEWGLNRFTSLRNLSIGGGYPDLLSSPPFP 699 (788)
Q Consensus 620 ~~l~~l~~~~~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~ 699 (788)
. +..++....+|++|+++++ .++.+|.. +++|+.|++++|... .++. .+++|++|++++ +.+..+|..+
T Consensus 308 ~-l~~i~~~~~~L~~L~Ls~N-~l~~lp~~--~~~L~~L~L~~N~l~-~lp~----~l~~L~~L~L~~--N~l~~l~~ip 376 (454)
T 1jl5_A 308 E-IRSLCDLPPSLEELNVSNN-KLIELPAL--PPRLERLIASFNHLA-EVPE----LPQNLKQLHVEY--NPLREFPDIP 376 (454)
T ss_dssp C-CSEECCCCTTCCEEECCSS-CCSCCCCC--CTTCCEEECCSSCCS-CCCC----CCTTCCEEECCS--SCCSSCCCCC
T ss_pred c-CCcccCCcCcCCEEECCCC-cccccccc--CCcCCEEECCCCccc-cccc----hhhhccEEECCC--CCCCcCCCCh
Confidence 4 3444433347777777764 45555543 467777777766443 3442 356777777776 4555555544
Q ss_pred CCCCeEecCCCCCcccchhhcCCCCCCCceecccCCCCcccCCCCCcCCcceEeecCCh
Q 003899 700 ASLTELWISDMPDLECLSSISENLTSLEFLYLIDCPKLKYFPEQGLPKSLSRLSIHNCP 758 (788)
Q Consensus 700 ~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~i~~c~ 758 (788)
..+..|.. ++....+|. .+++|+.|++++| .++.+|. +|++++.|.+.+|.
T Consensus 377 ~~l~~L~~--n~~~~~i~~---~~~~L~~L~ls~N-~l~~~~~--iP~sl~~L~~~~~~ 427 (454)
T 1jl5_A 377 ESVEDLRM--NSHLAEVPE---LPQNLKQLHVETN-PLREFPD--IPESVEDLRMNSER 427 (454)
T ss_dssp TTCCEEEC--CC-----------------------------------------------
T ss_pred HHHHhhhh--ccccccccc---ccCcCCEEECCCC-cCCcccc--chhhHhheeCcCcc
Confidence 55555443 234445553 2489999999999 5665544 67889999998875
No 24
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.96 E-value=3.4e-28 Score=273.57 Aligned_cols=335 Identities=19% Similarity=0.160 Sum_probs=170.3
Q ss_pred CCeeEEEccCCcCccccc-ccccCCCCCceeeccCCccccc-chhhhccccCcEEEccCccchhhchhhhhcccCCceEe
Q 003899 118 PRLRVFSLHGYSNIIELP-NEIENLKHLRFLNLSRTSIQIL-PESINSLYNLNTILLEDCYQLKKLCNDMGNLKKLRHLK 195 (788)
Q Consensus 118 ~~Lr~L~L~~~~~l~~lp-~~~~~l~~L~~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~ 195 (788)
++|++|++++| .+..+| .+|.++++|++|+|++|.|+.+ |..|+.+++|++|++++| .+..+|.. .+++|++|+
T Consensus 52 ~~L~~L~Ls~N-~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~~--~l~~L~~L~ 127 (562)
T 3a79_B 52 PRTKALSLSQN-SISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHN-RLQNISCC--PMASLRHLD 127 (562)
T ss_dssp TTCCEEECCSS-CCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTS-CCCEECSC--CCTTCSEEE
T ss_pred CCcCEEECCCC-CccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCC-cCCccCcc--ccccCCEEE
Confidence 55666666666 555554 4566666666666666666655 455666666666666666 55566654 566666666
Q ss_pred cCCCcCcccCC--ccCcCCCCcceeCceEeCCCCCCCcccccccccCCceeEEeccCCCCCchhhhhcccCCCcCCceEE
Q 003899 196 SSNVDSLEEMP--KGFGKLTCLLTLGTFVVGKDGGSGLRELKSLTHLQGTLQISKLENVKDVGDACEAQLNSKENLQALL 273 (788)
Q Consensus 196 l~~~~~l~~~p--~~i~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~ 273 (788)
+++|. +..+| ..++++++|++|++.++....
T Consensus 128 Ls~N~-l~~l~~p~~~~~l~~L~~L~L~~n~l~~---------------------------------------------- 160 (562)
T 3a79_B 128 LSFND-FDVLPVCKEFGNLTKLTFLGLSAAKFRQ---------------------------------------------- 160 (562)
T ss_dssp CCSSC-CSBCCCCGGGGGCTTCCEEEEECSBCCT----------------------------------------------
T ss_pred CCCCC-ccccCchHhhcccCcccEEecCCCcccc----------------------------------------------
Confidence 66665 44433 445566666665554332110
Q ss_pred EEeecCcccCccchhhhhhhcccCccccccceEEEEeeCC--C-CCCcccCCCCCCCeeEEEECCCCC-CCCCC--CCCC
Q 003899 274 LKWSTRDVQNLDQCEFETHVLSVLKPHQDVQELTITGYGG--T-KFPIWLGDSSFSKLARLELCRCTS-TSLPS--VGQL 347 (788)
Q Consensus 274 l~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~--~-~~p~~~~~~~~~~L~~L~L~~~~~-~~l~~--l~~l 347 (788)
..+..+..+ +|+.|+++++.. . ..|.++.......+ .++++.|.. ..++. +..+
T Consensus 161 ------------------~~~~~l~~L-~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l-~l~l~~n~~~~~~~~~~~~~l 220 (562)
T 3a79_B 161 ------------------LDLLPVAHL-HLSCILLDLVSYHIKGGETESLQIPNTTVL-HLVFHPNSLFSVQVNMSVNAL 220 (562)
T ss_dssp ------------------TTTGGGTTS-CEEEEEEEESSCCCCSSSCCEEEECCEEEE-EEEECSSSCCCCCCEEEESSE
T ss_pred ------------------Cchhhhhhc-eeeEEEeecccccccccCcccccccCcceE-EEEecCccchhhhhhhccccc
Confidence 001111111 224455544433 1 12322221011111 345555555 33332 4566
Q ss_pred CCccEEEecCCCCc-eEeCcccccCCCCCCCCCcceEecccccc----cccccccCCCCcccccCCcccEEeeecCcccc
Q 003899 348 PFLMELDISGMDGV-KSVGSEFYRRSCSVPFPSLETLSFSDMRE----WEEWIPCGAGQEVDEVFPKLRKLSLFNCHKLQ 422 (788)
Q Consensus 348 ~~L~~L~l~~~~~~-~~~~~~~~~~~~~~~~~~L~~L~l~~~~~----l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~ 422 (788)
++|+.|++++|... ..++... ......++|+.+.+.++.- +..+. .....++|++|++++| .+.
T Consensus 221 ~~L~~L~l~~n~~~~~~l~~~~---~~l~~l~~L~~L~L~~~~l~~~~~~~~~-------~~~~~~~L~~L~l~~n-~l~ 289 (562)
T 3a79_B 221 GHLQLSNIKLNDENCQRLMTFL---SELTRGPTLLNVTLQHIETTWKCSVKLF-------QFFWPRPVEYLNIYNL-TIT 289 (562)
T ss_dssp EEEEEEEEECCSTTHHHHHHHH---HHHHSCSSCEEEEEEEEEECHHHHHHHH-------HHHTTSSEEEEEEEEE-EEC
T ss_pred ceEEEecccccccccchHHHHH---HHHhccCcceEEEecCCcCcHHHHHHHH-------HhhhcccccEEEEecc-Eee
Confidence 77777777765310 0000000 0011256666666665321 11111 1112357888888887 566
Q ss_pred cCCCCCC-----CCccEEEEeccCCcccccC--------CCCCccEEEeccCCcceecCCcCCCCccEEeccccccceee
Q 003899 423 GKLPKRL-----LLLETLVIKSCQQLLVTIQ--------CLPALSELQIDGCERVVFSSPIDLSSLKSVHLAYVANEVVL 489 (788)
Q Consensus 423 ~~lp~~l-----~~L~~L~l~~c~~l~~~~~--------~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 489 (788)
|.+|..+ ++|+.|.+.+.......++ ...+|++|++++|..........+++|+.|++++|.....+
T Consensus 290 ~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 369 (562)
T 3a79_B 290 ERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSV 369 (562)
T ss_dssp SCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTT
T ss_pred ccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCcccccCccCCCCceEEECCCCccccch
Confidence 5677655 6666666655432211111 12457777777776443333355677777777776543333
Q ss_pred ccccccCCCCccEEEEecCcccchhhhcccccccCCCCCCeEEcccCC
Q 003899 490 AGLFEQGLPKLENLVIVEVREQAYLWQSETRLLQDIRSLNRLHISRCP 537 (788)
Q Consensus 490 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~ 537 (788)
+.. +..+++|+.|++++|........ +..+..+++|++|++++|.
T Consensus 370 ~~~-~~~l~~L~~L~L~~N~l~~~~~~--~~~~~~l~~L~~L~l~~N~ 414 (562)
T 3a79_B 370 FQG-CSTLKRLQTLILQRNGLKNFFKV--ALMTKNMSSLETLDVSLNS 414 (562)
T ss_dssp TTT-CCSCSSCCEEECCSSCCCBTTHH--HHTTTTCTTCCEEECTTSC
T ss_pred hhh-hcccCCCCEEECCCCCcCCcccc--hhhhcCCCCCCEEECCCCc
Confidence 332 35667777777777765542100 3456667777777777654
No 25
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.96 E-value=3.6e-28 Score=273.32 Aligned_cols=452 Identities=15% Similarity=0.092 Sum_probs=256.2
Q ss_pred eeEEEEEccCCccccccccccCCCceeEEEeccCCccccchhhhhHHHHhCCCCCeeEEEccCCcCcccc-cccccCCCC
Q 003899 65 LRHFSYICGESDGEKRLQSVCDVEHLRTFLPVNLSNYRINYLAWSVLQMLMNLPRLRVFSLHGYSNIIEL-PNEIENLKH 143 (788)
Q Consensus 65 ~r~lsl~~~~~~~~~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~l~~l-p~~~~~l~~ 143 (788)
.+++.+.++...... ..+ .++++.|.+.++. +..-.+..|.++++|++|++++| .+..+ |..|+++++
T Consensus 33 ~~~l~ls~~~L~~ip--~~~--~~~L~~L~Ls~N~------i~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~ 101 (562)
T 3a79_B 33 ESMVDYSNRNLTHVP--KDL--PPRTKALSLSQNS------ISELRMPDISFLSELRVLRLSHN-RIRSLDFHVFLFNQD 101 (562)
T ss_dssp CCEEECTTSCCCSCC--TTS--CTTCCEEECCSSC------CCCCCGGGTTTCTTCCEEECCSC-CCCEECTTTTTTCTT
T ss_pred CcEEEcCCCCCccCC--CCC--CCCcCEEECCCCC------ccccChhhhccCCCccEEECCCC-CCCcCCHHHhCCCCC
Confidence 377777777654422 122 3789999988864 32333348999999999999999 88888 578999999
Q ss_pred CceeeccCCcccccchhhhccccCcEEEccCccchhhch--hhhhcccCCceEecCCCcCcccCCccCcCCCCc--ceeC
Q 003899 144 LRFLNLSRTSIQILPESINSLYNLNTILLEDCYQLKKLC--NDMGNLKKLRHLKSSNVDSLEEMPKGFGKLTCL--LTLG 219 (788)
Q Consensus 144 L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp--~~i~~L~~L~~L~l~~~~~l~~~p~~i~~l~~L--~~L~ 219 (788)
|++|+|++|.|+.+|.. .+++|++|++++| .+..+| ..++++++|++|++++|. +.. ..++.+++| ++|+
T Consensus 102 L~~L~Ls~N~l~~lp~~--~l~~L~~L~Ls~N-~l~~l~~p~~~~~l~~L~~L~L~~n~-l~~--~~~~~l~~L~L~~L~ 175 (562)
T 3a79_B 102 LEYLDVSHNRLQNISCC--PMASLRHLDLSFN-DFDVLPVCKEFGNLTKLTFLGLSAAK-FRQ--LDLLPVAHLHLSCIL 175 (562)
T ss_dssp CCEEECTTSCCCEECSC--CCTTCSEEECCSS-CCSBCCCCGGGGGCTTCCEEEEECSB-CCT--TTTGGGTTSCEEEEE
T ss_pred CCEEECCCCcCCccCcc--ccccCCEEECCCC-CccccCchHhhcccCcccEEecCCCc-ccc--CchhhhhhceeeEEE
Confidence 99999999999999987 8999999999999 677654 789999999999999998 543 345666666 9999
Q ss_pred ceEeCCC-CCCCcccccccccCCceeEEeccCCCCCchhhhhcccCCCcCCceEEEEeecCcccCccchhhhhhhcccCc
Q 003899 220 TFVVGKD-GGSGLRELKSLTHLQGTLQISKLENVKDVGDACEAQLNSKENLQALLLKWSTRDVQNLDQCEFETHVLSVLK 298 (788)
Q Consensus 220 ~~~~~~~-~~~~~~~l~~L~~L~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~ 298 (788)
+..+... .......+..+.. + .+.+ .+.............+..+++|+.++++++.. ...........+.
T Consensus 176 L~~n~l~~~~~~~~~l~~l~~-~-~l~l-~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~------~~~~l~~~~~~l~ 246 (562)
T 3a79_B 176 LDLVSYHIKGGETESLQIPNT-T-VLHL-VFHPNSLFSVQVNMSVNALGHLQLSNIKLNDE------NCQRLMTFLSELT 246 (562)
T ss_dssp EEESSCCCCSSSCCEEEECCE-E-EEEE-EECSSSCCCCCCEEEESSEEEEEEEEEECCST------THHHHHHHHHHHH
T ss_pred eecccccccccCcccccccCc-c-eEEE-EecCccchhhhhhhcccccceEEEeccccccc------ccchHHHHHHHHh
Confidence 9887651 1122233333321 1 2222 11111111122223455677888888877642 0111122334456
Q ss_pred cccccceEEEEeeCCC-----CCCcccCCCCCCCeeEEEECCCCC-CCCCC-C-----CCCCCccEEEecCCCCceEeCc
Q 003899 299 PHQDVQELTITGYGGT-----KFPIWLGDSSFSKLARLELCRCTS-TSLPS-V-----GQLPFLMELDISGMDGVKSVGS 366 (788)
Q Consensus 299 ~~~~L~~L~l~~~~~~-----~~p~~~~~~~~~~L~~L~L~~~~~-~~l~~-l-----~~l~~L~~L~l~~~~~~~~~~~ 366 (788)
..++|+.+++.++... .++.+. ..++|+.|++++|.+ ..+|. + ..++.|+.+++..+.. .++.
T Consensus 247 ~l~~L~~L~L~~~~l~~~~~~~~~~~~---~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~~p~ 321 (562)
T 3a79_B 247 RGPTLLNVTLQHIETTWKCSVKLFQFF---WPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF--LFSK 321 (562)
T ss_dssp SCSSCEEEEEEEEEECHHHHHHHHHHH---TTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC--SSCH
T ss_pred ccCcceEEEecCCcCcHHHHHHHHHhh---hcccccEEEEeccEeeccccchhhhcccccchheehhhccccee--ecCh
Confidence 6677777777765432 122222 234788888887776 45554 2 3344444444433321 1110
Q ss_pred ccccCCCCCCCCCcceEecccccccccccccCCCCcccccCCcccEEeeecCcccccCCCCCCCCccEEEEeccCCc---
Q 003899 367 EFYRRSCSVPFPSLETLSFSDMREWEEWIPCGAGQEVDEVFPKLRKLSLFNCHKLQGKLPKRLLLLETLVIKSCQQL--- 443 (788)
Q Consensus 367 ~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~lp~~l~~L~~L~l~~c~~l--- 443 (788)
.... .....++|++|++++|.-....++..+++|++|++++|...
T Consensus 322 ~~~~--------------------------------~~~~~~~L~~L~l~~n~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 369 (562)
T 3a79_B 322 EALY--------------------------------SVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSV 369 (562)
T ss_dssp HHHH--------------------------------HHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTT
T ss_pred hhhh--------------------------------hhhccCcceEEEccCCCcccccCccCCCCceEEECCCCccccch
Confidence 0000 00011335555555542111011133333444444333211
Q ss_pred ccccCCCCCccEEEeccCCccee----cCCcCCCCccEEeccccccceeeccccccCCCCccEEEEecCcccchhhhccc
Q 003899 444 LVTIQCLPALSELQIDGCERVVF----SSPIDLSSLKSVHLAYVANEVVLAGLFEQGLPKLENLVIVEVREQAYLWQSET 519 (788)
Q Consensus 444 ~~~~~~~~~L~~L~l~~~~~~~~----~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~ 519 (788)
...+..+++|++|++++|..... ..+..+++|+.|++++|.....++...+..+++|++|++++|...... +
T Consensus 370 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~----~ 445 (562)
T 3a79_B 370 FQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSV----F 445 (562)
T ss_dssp TTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGG----G
T ss_pred hhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcch----h
Confidence 12334455566666665553221 123344555555555544333244433444455555555555443322 2
Q ss_pred ccccCCCCCCeEEcccCCCccccccCccccccCCCCcccccceEEEEEecCccCcccccccccCCCCcceEEEecCCCCc
Q 003899 520 RLLQDIRSLNRLHISRCPRLLSLVTDEEHDQQQPESPYRLRFLELKIFIYDLENLQSLPAGLHNLRHLQKIWISKCPNLE 599 (788)
Q Consensus 520 ~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~l~~L~L~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~ 599 (788)
..+. ++|++|++++ | .++.+|..+..+++|++|++++| .++
T Consensus 446 ~~l~--~~L~~L~L~~-----------------------------------N-~l~~ip~~~~~l~~L~~L~L~~N-~l~ 486 (562)
T 3a79_B 446 RCLP--PKVKVLDLHN-----------------------------------N-RIMSIPKDVTHLQALQELNVASN-QLK 486 (562)
T ss_dssp SSCC--TTCSEEECCS-----------------------------------S-CCCCCCTTTTSSCCCSEEECCSS-CCC
T ss_pred hhhc--CcCCEEECCC-----------------------------------C-cCcccChhhcCCCCCCEEECCCC-CCC
Confidence 2111 3444444444 3 33455555567888888888884 666
Q ss_pred ccCCC-CCCCCcccEEEecccccc
Q 003899 600 SFPEE-GLPSAKLTELMIWRCENL 622 (788)
Q Consensus 600 ~~~~~-~~~~~~L~~L~l~~c~~l 622 (788)
.+|.. +..+++|++|++++|+..
T Consensus 487 ~l~~~~~~~l~~L~~L~l~~N~~~ 510 (562)
T 3a79_B 487 SVPDGVFDRLTSLQYIWLHDNPWD 510 (562)
T ss_dssp CCCTTSTTTCTTCCCEECCSCCBC
T ss_pred CCCHHHHhcCCCCCEEEecCCCcC
Confidence 77776 556778888888877643
No 26
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.96 E-value=8.1e-28 Score=260.77 Aligned_cols=400 Identities=19% Similarity=0.123 Sum_probs=185.6
Q ss_pred CCCCeeEEEccCCcCcccccccccCCCCCceeeccCCccc-ccchhhhccccC-------------cEEEccCccchhhc
Q 003899 116 NLPRLRVFSLHGYSNIIELPNEIENLKHLRFLNLSRTSIQ-ILPESINSLYNL-------------NTILLEDCYQLKKL 181 (788)
Q Consensus 116 ~l~~Lr~L~L~~~~~l~~lp~~~~~l~~L~~L~L~~~~i~-~lp~~i~~L~~L-------------~~L~L~~~~~l~~l 181 (788)
+.++||+|++++| .++.+|.+|+++++|++|++++|.+. .+|.+++.+++| ++|++++| .+..+
T Consensus 9 ~~~~L~~L~l~~n-~l~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~-~l~~l 86 (454)
T 1jl5_A 9 SNTFLQEPLRHSS-NLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNL-GLSSL 86 (454)
T ss_dssp --------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTS-CCSCC
T ss_pred ccccchhhhcccC-chhhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCC-ccccC
Confidence 3567888888888 77788888888888888888888776 678778777765 77777777 56666
Q ss_pred hhhhhcccCCceEecCCCcCcccCCccCcCCCCcceeCceEeCCCCCCCcccccccccCCceeEEeccCCCCCchhhhhc
Q 003899 182 CNDMGNLKKLRHLKSSNVDSLEEMPKGFGKLTCLLTLGTFVVGKDGGSGLRELKSLTHLQGTLQISKLENVKDVGDACEA 261 (788)
Q Consensus 182 p~~i~~L~~L~~L~l~~~~~l~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~~~~~~~~~~~~~~~~~ 261 (788)
|.. .++|++|++++|. +..+|.. +++|++|++.++...+ ++.+
T Consensus 87 p~~---~~~L~~L~l~~n~-l~~lp~~---~~~L~~L~l~~n~l~~------l~~~------------------------ 129 (454)
T 1jl5_A 87 PEL---PPHLESLVASCNS-LTELPEL---PQSLKSLLVDNNNLKA------LSDL------------------------ 129 (454)
T ss_dssp CSC---CTTCSEEECCSSC-CSSCCCC---CTTCCEEECCSSCCSC------CCSC------------------------
T ss_pred CCC---cCCCCEEEccCCc-CCccccc---cCCCcEEECCCCccCc------ccCC------------------------
Confidence 652 3677777777777 6666653 3566666664432211 0000
Q ss_pred ccCCCcCCceEEEEeecCcccCccchhhhhhhcccCccccccceEEEEeeCCCCCCcccCCCCCCCeeEEEECCCCCCCC
Q 003899 262 QLNSKENLQALLLKWSTRDVQNLDQCEFETHVLSVLKPHQDVQELTITGYGGTKFPIWLGDSSFSKLARLELCRCTSTSL 341 (788)
Q Consensus 262 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~L~~~~~~~l 341 (788)
.++|+.|+++.+.. .. .+ .+..+++|+.|++++|....+|.+ +++|+.|++++|.+..+
T Consensus 130 ----~~~L~~L~L~~n~l----------~~-lp-~~~~l~~L~~L~l~~N~l~~lp~~-----~~~L~~L~L~~n~l~~l 188 (454)
T 1jl5_A 130 ----PPLLEYLGVSNNQL----------EK-LP-ELQNSSFLKIIDVDNNSLKKLPDL-----PPSLEFIAAGNNQLEEL 188 (454)
T ss_dssp ----CTTCCEEECCSSCC----------SS-CC-CCTTCTTCCEEECCSSCCSCCCCC-----CTTCCEEECCSSCCSSC
T ss_pred ----CCCCCEEECcCCCC----------CC-Cc-ccCCCCCCCEEECCCCcCcccCCC-----cccccEEECcCCcCCcC
Confidence 03566666655544 11 12 366667777777777766666643 34777777777777556
Q ss_pred CCCCCCCCccEEEecCCCCceEeCcccccCCCCCCCCCcceEecccccccccccccCCCCcccccCCcccEEeeecCccc
Q 003899 342 PSVGQLPFLMELDISGMDGVKSVGSEFYRRSCSVPFPSLETLSFSDMREWEEWIPCGAGQEVDEVFPKLRKLSLFNCHKL 421 (788)
Q Consensus 342 ~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l 421 (788)
|.++.+++|++|++++|... .++.. .++|++|+++++ .+..++ ..+.+++|++|++++| .+
T Consensus 189 ~~~~~l~~L~~L~l~~N~l~-~l~~~---------~~~L~~L~l~~n-~l~~lp-------~~~~l~~L~~L~l~~N-~l 249 (454)
T 1jl5_A 189 PELQNLPFLTAIYADNNSLK-KLPDL---------PLSLESIVAGNN-ILEELP-------ELQNLPFLTTIYADNN-LL 249 (454)
T ss_dssp CCCTTCTTCCEEECCSSCCS-SCCCC---------CTTCCEEECCSS-CCSSCC-------CCTTCTTCCEEECCSS-CC
T ss_pred ccccCCCCCCEEECCCCcCC-cCCCC---------cCcccEEECcCC-cCCccc-------ccCCCCCCCEEECCCC-cC
Confidence 67777777777777777422 22211 456777777764 333333 2345777777777776 55
Q ss_pred ccCCCCCCCCccEEEEeccCCcccccCCCCCccEEEeccCCcceecCCcCCCCccEEeccccccceeeccccccCCCCcc
Q 003899 422 QGKLPKRLLLLETLVIKSCQQLLVTIQCLPALSELQIDGCERVVFSSPIDLSSLKSVHLAYVANEVVLAGLFEQGLPKLE 501 (788)
Q Consensus 422 ~~~lp~~l~~L~~L~l~~c~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~ 501 (788)
. .+|..+++|+.|++++|... ..-..+++|++|++++|........ .++|+.|++++|.. +.++ ..+++|+
T Consensus 250 ~-~l~~~~~~L~~L~l~~N~l~-~l~~~~~~L~~L~ls~N~l~~l~~~--~~~L~~L~l~~N~l-~~i~----~~~~~L~ 320 (454)
T 1jl5_A 250 K-TLPDLPPSLEALNVRDNYLT-DLPELPQSLTFLDVSENIFSGLSEL--PPNLYYLNASSNEI-RSLC----DLPPSLE 320 (454)
T ss_dssp S-SCCSCCTTCCEEECCSSCCS-CCCCCCTTCCEEECCSSCCSEESCC--CTTCCEEECCSSCC-SEEC----CCCTTCC
T ss_pred C-cccccccccCEEECCCCccc-ccCcccCcCCEEECcCCccCcccCc--CCcCCEEECcCCcC-Cccc----CCcCcCC
Confidence 5 46666667777777665422 1111235666666666653332211 25666666665432 2222 1124566
Q ss_pred EEEEecCcccchhhhcccccccCCCCCCeEEcccCCCccccccCccccccCCCCcccccceEE-EEEecCccCcc--ccc
Q 003899 502 NLVIVEVREQAYLWQSETRLLQDIRSLNRLHISRCPRLLSLVTDEEHDQQQPESPYRLRFLEL-KIFIYDLENLQ--SLP 578 (788)
Q Consensus 502 ~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~l~~L~L-~L~l~~~~~l~--~l~ 578 (788)
.|++++|.... + +.. +++|++|++++|. ++.+|.. +++ | .++++++.... .+|
T Consensus 321 ~L~Ls~N~l~~-l----p~~---~~~L~~L~L~~N~-l~~lp~~------l~~---------L~~L~L~~N~l~~l~~ip 376 (454)
T 1jl5_A 321 ELNVSNNKLIE-L----PAL---PPRLERLIASFNH-LAEVPEL------PQN---------LKQLHVEYNPLREFPDIP 376 (454)
T ss_dssp EEECCSSCCSC-C----CCC---CTTCCEEECCSSC-CSCCCCC------CTT---------CCEEECCSSCCSSCCCCC
T ss_pred EEECCCCcccc-c----ccc---CCcCCEEECCCCc-cccccch------hhh---------ccEEECCCCCCCcCCCCh
Confidence 66666665443 2 221 3566666666542 3333221 222 3 44444433222 223
Q ss_pred ccccCCCCcceEEEecCCCCcccCCCCCCCCcccEEEeccccccc--ccccccCccceEeccCCC
Q 003899 579 AGLHNLRHLQKIWISKCPNLESFPEEGLPSAKLTELMIWRCENLK--ALPNSMSSLLRLGIIGCP 641 (788)
Q Consensus 579 ~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~c~~l~--~l~~~~~~L~~L~l~~c~ 641 (788)
..+.. | +.+.....+|.. +++|++|++++|+... .+|. +++.|.+.+|.
T Consensus 377 ~~l~~------L--~~n~~~~~i~~~---~~~L~~L~ls~N~l~~~~~iP~---sl~~L~~~~~~ 427 (454)
T 1jl5_A 377 ESVED------L--RMNSHLAEVPEL---PQNLKQLHVETNPLREFPDIPE---SVEDLRMNSER 427 (454)
T ss_dssp TTCCE------E--ECCC-----------------------------------------------
T ss_pred HHHHh------h--hhcccccccccc---cCcCCEEECCCCcCCccccchh---hHhheeCcCcc
Confidence 22221 1 122233333321 2678888888765443 4443 56666666654
No 27
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.95 E-value=2.1e-26 Score=252.50 Aligned_cols=343 Identities=17% Similarity=0.187 Sum_probs=201.1
Q ss_pred CCCceeEEEeccCCccccchhhhhHHHHhCCCCCeeEEEccCCcCcccccccccCCCCCceeeccCCcccccchhhhccc
Q 003899 86 DVEHLRTFLPVNLSNYRINYLAWSVLQMLMNLPRLRVFSLHGYSNIIELPNEIENLKHLRFLNLSRTSIQILPESINSLY 165 (788)
Q Consensus 86 ~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~L~ 165 (788)
++++++.|.+.+..- ..+| .+..+++|++|++++| .+..+|. ++++++|++|++++|.+..+|. ++.++
T Consensus 44 ~l~~l~~L~l~~~~i-------~~l~-~~~~l~~L~~L~Ls~n-~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~ 112 (466)
T 1o6v_A 44 DLDQVTTLQADRLGI-------KSID-GVEYLNNLTQINFSNN-QLTDITP-LKNLTKLVDILMNNNQIADITP-LANLT 112 (466)
T ss_dssp HHHTCCEEECCSSCC-------CCCT-TGGGCTTCCEEECCSS-CCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GTTCT
T ss_pred HhccccEEecCCCCC-------ccCc-chhhhcCCCEEECCCC-ccCCchh-hhccccCCEEECCCCccccChh-hcCCC
Confidence 355667776655431 1222 2566777777777777 6666655 7777777777777777776665 77777
Q ss_pred cCcEEEccCccchhhchhhhhcccCCceEecCCCcCcccCCccCcCCCCcceeCceEeCCCCCCCcccccccccCCceeE
Q 003899 166 NLNTILLEDCYQLKKLCNDMGNLKKLRHLKSSNVDSLEEMPKGFGKLTCLLTLGTFVVGKDGGSGLRELKSLTHLQGTLQ 245 (788)
Q Consensus 166 ~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~ 245 (788)
+|++|++++| .+..+|. +..+++|++|++++|. +..+| .++.+++|++|++.. .... +
T Consensus 113 ~L~~L~L~~n-~l~~~~~-~~~l~~L~~L~l~~n~-l~~~~-~~~~l~~L~~L~l~~-~~~~---~-------------- 170 (466)
T 1o6v_A 113 NLTGLTLFNN-QITDIDP-LKNLTNLNRLELSSNT-ISDIS-ALSGLTSLQQLSFGN-QVTD---L-------------- 170 (466)
T ss_dssp TCCEEECCSS-CCCCCGG-GTTCTTCSEEEEEEEE-ECCCG-GGTTCTTCSEEEEEE-SCCC---C--------------
T ss_pred CCCEEECCCC-CCCCChH-HcCCCCCCEEECCCCc-cCCCh-hhccCCcccEeecCC-cccC---c--------------
Confidence 7777777777 5666665 7777777777777776 55554 366666666666521 1000 0
Q ss_pred EeccCCCCCchhhhhcccCCCcCCceEEEEeecCcccCccchhhhhhhcccCccccccceEEEEeeCCCCCCcccCCCCC
Q 003899 246 ISKLENVKDVGDACEAQLNSKENLQALLLKWSTRDVQNLDQCEFETHVLSVLKPHQDVQELTITGYGGTKFPIWLGDSSF 325 (788)
Q Consensus 246 ~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~~ 325 (788)
..+..+++|+.|+++.+.. .....+..+++|+.|+++++.....+. +. .+
T Consensus 171 ---------------~~~~~l~~L~~L~l~~n~l------------~~~~~l~~l~~L~~L~l~~n~l~~~~~-~~--~l 220 (466)
T 1o6v_A 171 ---------------KPLANLTTLERLDISSNKV------------SDISVLAKLTNLESLIATNNQISDITP-LG--IL 220 (466)
T ss_dssp ---------------GGGTTCTTCCEEECCSSCC------------CCCGGGGGCTTCSEEECCSSCCCCCGG-GG--GC
T ss_pred ---------------hhhccCCCCCEEECcCCcC------------CCChhhccCCCCCEEEecCCccccccc-cc--cc
Confidence 0133445566666655443 011224455666666666665555443 21 46
Q ss_pred CCeeEEEECCCCCCCCCCCCCCCCccEEEecCCCCceEeCcccccCCCCCCCCCcceEecccccccccccccCCCCcccc
Q 003899 326 SKLARLELCRCTSTSLPSVGQLPFLMELDISGMDGVKSVGSEFYRRSCSVPFPSLETLSFSDMREWEEWIPCGAGQEVDE 405 (788)
Q Consensus 326 ~~L~~L~L~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~ 405 (788)
++|+.|++++|.+..++.+..+++|++|++++|... .++. . ..+++|+.|+++++ .+..+. ...
T Consensus 221 ~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~-~~~~--~-----~~l~~L~~L~l~~n-~l~~~~-------~~~ 284 (466)
T 1o6v_A 221 TNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQIS-NLAP--L-----SGLTKLTELKLGAN-QISNIS-------PLA 284 (466)
T ss_dssp TTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCC-CCGG--G-----TTCTTCSEEECCSS-CCCCCG-------GGT
T ss_pred CCCCEEECCCCCcccchhhhcCCCCCEEECCCCccc-cchh--h-----hcCCCCCEEECCCC-ccCccc-------ccc
Confidence 666666666666655555666666666666666422 2211 1 11555555555543 222221 123
Q ss_pred cCCcccEEeeecCcccccCCCCCCCCccEEEEeccCCcccccCCCCCccEEEeccCCcceecCCcCCCCccEEecccccc
Q 003899 406 VFPKLRKLSLFNCHKLQGKLPKRLLLLETLVIKSCQQLLVTIQCLPALSELQIDGCERVVFSSPIDLSSLKSVHLAYVAN 485 (788)
Q Consensus 406 ~~~~L~~L~l~~c~~l~~~lp~~l~~L~~L~l~~c~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~ 485 (788)
.+++|+.|++++| .+. .++ .+..+++|++|++++|.......+..+++|+.|++++|.
T Consensus 285 ~l~~L~~L~L~~n-~l~-~~~-------------------~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n~- 342 (466)
T 1o6v_A 285 GLTALTNLELNEN-QLE-DIS-------------------PISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNK- 342 (466)
T ss_dssp TCTTCSEEECCSS-CCS-CCG-------------------GGGGCTTCSEEECCSSCCSCCGGGGGCTTCCEEECCSSC-
T ss_pred CCCccCeEEcCCC-ccc-Cch-------------------hhcCCCCCCEEECcCCcCCCchhhccCccCCEeECCCCc-
Confidence 3555555555554 333 111 244567777777777764444445667788888887764
Q ss_pred ceeeccccccCCCCccEEEEecCcccchhhhcccccccCCCCCCeEEcccCC
Q 003899 486 EVVLAGLFEQGLPKLENLVIVEVREQAYLWQSETRLLQDIRSLNRLHISRCP 537 (788)
Q Consensus 486 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~ 537 (788)
++.++. +..+++|+.|++++|...... + +..+++|++|++++|+
T Consensus 343 l~~~~~--l~~l~~L~~L~l~~n~l~~~~----~--~~~l~~L~~L~l~~n~ 386 (466)
T 1o6v_A 343 VSDVSS--LANLTNINWLSAGHNQISDLT----P--LANLTRITQLGLNDQA 386 (466)
T ss_dssp CCCCGG--GTTCTTCCEEECCSSCCCBCG----G--GTTCTTCCEEECCCEE
T ss_pred cCCchh--hccCCCCCEEeCCCCccCccc----h--hhcCCCCCEEeccCCc
Confidence 344432 467788888888888776554 3 7778888888888864
No 28
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.94 E-value=9.7e-26 Score=244.69 Aligned_cols=127 Identities=17% Similarity=0.139 Sum_probs=70.3
Q ss_pred cceEEEecCCCCcccCCCCCCCCcccEEEecccccccccccccCccceEeccCCCCCCCCCCCCCCCCccEEEEeccCCC
Q 003899 587 LQKIWISKCPNLESFPEEGLPSAKLTELMIWRCENLKALPNSMSSLLRLGIIGCPSLESFPEDGFPTNLQSLEVRDLKIT 666 (788)
Q Consensus 587 L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~~~~~ 666 (788)
|+.|++++|.....+|. ..+++|+.|++++|..++.+|....+|+.|++++| ++|+.|++++|...
T Consensus 266 L~~L~l~~n~~~~~~~~--~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~------------~~L~~L~L~~N~l~ 331 (457)
T 3bz5_A 266 LLEIDLTHNTQLIYFQA--EGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQN------------PKLVYLYLNNTELT 331 (457)
T ss_dssp CSCCCCTTCTTCCEEEC--TTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTC------------TTCCEEECTTCCCS
T ss_pred CCEEECCCCccCCcccc--cccccCCEEECCCCcccceeccCCCcceEechhhc------------ccCCEEECCCCccc
Confidence 34444444444444442 23455555555555555555554455666665554 35667777665544
Q ss_pred CcccccccCCCCCccEEEEcCCCCCcccCCCCCCCCCeEecCCCCCcccchhhcCCCCCCCceecccCCCCcccCC
Q 003899 667 KPLLEWGLNRFTSLRNLSIGGGYPDLLSSPPFPASLTELWISDMPDLECLSSISENLTSLEFLYLIDCPKLKYFPE 742 (788)
Q Consensus 667 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~ 742 (788)
+ + .+.++++|+.|++++ +.+..++ +|..|++++ +.+...+ .+..|+.++++++.--..+|.
T Consensus 332 ~-l---~l~~l~~L~~L~l~~--N~l~~l~----~L~~L~l~~-n~l~g~~----~~~~l~~l~l~~N~l~g~ip~ 392 (457)
T 3bz5_A 332 E-L---DVSHNTKLKSLSCVN--AHIQDFS----SVGKIPALN-NNFEAEG----QTITMPKETLTNNSLTIAVSP 392 (457)
T ss_dssp C-C---CCTTCTTCSEEECCS--SCCCBCT----TGGGSSGGG-TSEEEEE----EEEECCCBCCBTTBEEEECCT
T ss_pred c-c---ccccCCcCcEEECCC--CCCCCcc----ccccccccC-CcEEecc----eeeecCccccccCcEEEEcCh
Confidence 3 2 267777888888877 5555543 555565555 3333322 345566777777743345554
No 29
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.93 E-value=6e-26 Score=246.31 Aligned_cols=304 Identities=18% Similarity=0.149 Sum_probs=180.4
Q ss_pred cccCCCceeEEEeccCCccccchhhhhHHHHhCCCCCeeEEEccCCcCcccccccccCCCCCceeeccCCcccccchhhh
Q 003899 83 SVCDVEHLRTFLPVNLSNYRINYLAWSVLQMLMNLPRLRVFSLHGYSNIIELPNEIENLKHLRFLNLSRTSIQILPESIN 162 (788)
Q Consensus 83 ~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~ 162 (788)
++.++++|+.|.+.++. +. .+| .+..+++|++|++++| .+..+| ++.+++|++|++++|.++.+| ++
T Consensus 37 ~~~~l~~L~~L~Ls~n~------l~-~~~-~l~~l~~L~~L~Ls~n-~l~~~~--~~~l~~L~~L~Ls~N~l~~~~--~~ 103 (457)
T 3bz5_A 37 SEEQLATLTSLDCHNSS------IT-DMT-GIEKLTGLTKLICTSN-NITTLD--LSQNTNLTYLACDSNKLTNLD--VT 103 (457)
T ss_dssp EHHHHTTCCEEECCSSC------CC-CCT-TGGGCTTCSEEECCSS-CCSCCC--CTTCTTCSEEECCSSCCSCCC--CT
T ss_pred ChhHcCCCCEEEccCCC------cc-cCh-hhcccCCCCEEEccCC-cCCeEc--cccCCCCCEEECcCCCCceee--cC
Confidence 44556667777666543 11 123 4666677777777776 666664 666777777777777766664 66
Q ss_pred ccccCcEEEccCccchhhchhhhhcccCCceEecCCCcCcccCCccCcCCCCcceeCceEeCCCCCCCcccccccccCCc
Q 003899 163 SLYNLNTILLEDCYQLKKLCNDMGNLKKLRHLKSSNVDSLEEMPKGFGKLTCLLTLGTFVVGKDGGSGLRELKSLTHLQG 242 (788)
Q Consensus 163 ~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~ 242 (788)
.+++|++|++++| .+..+| ++.+++|++|++++|. +..++ ++.+++|++|++..+...+..
T Consensus 104 ~l~~L~~L~L~~N-~l~~l~--~~~l~~L~~L~l~~N~-l~~l~--l~~l~~L~~L~l~~n~~~~~~------------- 164 (457)
T 3bz5_A 104 PLTKLTYLNCDTN-KLTKLD--VSQNPLLTYLNCARNT-LTEID--VSHNTQLTELDCHLNKKITKL------------- 164 (457)
T ss_dssp TCTTCCEEECCSS-CCSCCC--CTTCTTCCEEECTTSC-CSCCC--CTTCTTCCEEECTTCSCCCCC-------------
T ss_pred CCCcCCEEECCCC-cCCeec--CCCCCcCCEEECCCCc-cceec--cccCCcCCEEECCCCCccccc-------------
Confidence 6777777777776 555554 6667777777777766 55553 566666666665433211110
Q ss_pred eeEEeccCCCCCchhhhhcccCCCcCCceEEEEeecCcccCccchhhhhhhcccCccccccceEEEEeeCCCCCCcccCC
Q 003899 243 TLQISKLENVKDVGDACEAQLNSKENLQALLLKWSTRDVQNLDQCEFETHVLSVLKPHQDVQELTITGYGGTKFPIWLGD 322 (788)
Q Consensus 243 ~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~ 322 (788)
.+..+++|+.|+++++.. .. .+ +..+++|+.|+++++....++ +.
T Consensus 165 -------------------~~~~l~~L~~L~ls~n~l----------~~--l~-l~~l~~L~~L~l~~N~l~~~~--l~- 209 (457)
T 3bz5_A 165 -------------------DVTPQTQLTTLDCSFNKI----------TE--LD-VSQNKLLNRLNCDTNNITKLD--LN- 209 (457)
T ss_dssp -------------------CCTTCTTCCEEECCSSCC----------CC--CC-CTTCTTCCEEECCSSCCSCCC--CT-
T ss_pred -------------------ccccCCcCCEEECCCCcc----------ce--ec-cccCCCCCEEECcCCcCCeec--cc-
Confidence 134456667777666654 11 11 555677777777777766553 22
Q ss_pred CCCCCeeEEEECCCCCCCCCCCCCCCCccEEEecCCCCceEeCcccccCCCCCCCCCcceEeccc----------ccccc
Q 003899 323 SSFSKLARLELCRCTSTSLPSVGQLPFLMELDISGMDGVKSVGSEFYRRSCSVPFPSLETLSFSD----------MREWE 392 (788)
Q Consensus 323 ~~~~~L~~L~L~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~----------~~~l~ 392 (788)
.+++|+.|++++|.+..+| ++.+++|++|++++|.. ..++. ..+++|+.|.+++ +....
T Consensus 210 -~l~~L~~L~Ls~N~l~~ip-~~~l~~L~~L~l~~N~l-~~~~~--------~~l~~L~~L~l~~n~L~~L~l~~n~~~~ 278 (457)
T 3bz5_A 210 -QNIQLTFLDCSSNKLTEID-VTPLTQLTYFDCSVNPL-TELDV--------STLSKLTTLHCIQTDLLEIDLTHNTQLI 278 (457)
T ss_dssp -TCTTCSEEECCSSCCSCCC-CTTCTTCSEEECCSSCC-SCCCC--------TTCTTCCEEECTTCCCSCCCCTTCTTCC
T ss_pred -cCCCCCEEECcCCcccccC-ccccCCCCEEEeeCCcC-CCcCH--------HHCCCCCEEeccCCCCCEEECCCCccCC
Confidence 5777888888888775566 77778888888877743 22221 1255565555443 22222
Q ss_pred cccccCCCCcccccCCcccEEeeecCcccccCCCCCCCCccEEEEeccCCcccccCCCCCccEEEeccCCcceecCCcCC
Q 003899 393 EWIPCGAGQEVDEVFPKLRKLSLFNCHKLQGKLPKRLLLLETLVIKSCQQLLVTIQCLPALSELQIDGCERVVFSSPIDL 472 (788)
Q Consensus 393 ~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~lp~~l~~L~~L~l~~c~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 472 (788)
.++ .+.+++|+.|++++|+.+. .+|...++|+.|++++| ++|++|++++|..... .+..+
T Consensus 279 ~~~--------~~~l~~L~~L~Ls~n~~l~-~l~~~~~~L~~L~l~~~----------~~L~~L~L~~N~l~~l-~l~~l 338 (457)
T 3bz5_A 279 YFQ--------AEGCRKIKELDVTHNTQLY-LLDCQAAGITELDLSQN----------PKLVYLYLNNTELTEL-DVSHN 338 (457)
T ss_dssp EEE--------CTTCTTCCCCCCTTCTTCC-EEECTTCCCSCCCCTTC----------TTCCEEECTTCCCSCC-CCTTC
T ss_pred ccc--------ccccccCCEEECCCCcccc-eeccCCCcceEechhhc----------ccCCEEECCCCccccc-ccccC
Confidence 221 2346777777777775444 56655555655554443 5667777777764333 35556
Q ss_pred CCccEEeccccc
Q 003899 473 SSLKSVHLAYVA 484 (788)
Q Consensus 473 ~~L~~L~l~~~~ 484 (788)
++|+.|++++|.
T Consensus 339 ~~L~~L~l~~N~ 350 (457)
T 3bz5_A 339 TKLKSLSCVNAH 350 (457)
T ss_dssp TTCSEEECCSSC
T ss_pred CcCcEEECCCCC
Confidence 666666666643
No 30
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.93 E-value=1.9e-24 Score=236.82 Aligned_cols=343 Identities=17% Similarity=0.205 Sum_probs=214.5
Q ss_pred CCCeeEEEccCCcCcccccccccCCCCCceeeccCCcccccchhhhccccCcEEEccCccchhhchhhhhcccCCceEec
Q 003899 117 LPRLRVFSLHGYSNIIELPNEIENLKHLRFLNLSRTSIQILPESINSLYNLNTILLEDCYQLKKLCNDMGNLKKLRHLKS 196 (788)
Q Consensus 117 l~~Lr~L~L~~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l 196 (788)
+++|+.|+++++ .+..+| .+..+++|++|+|++|.+..+|. ++.+++|++|++++| .+..+|. ++.+++|++|++
T Consensus 45 l~~l~~L~l~~~-~i~~l~-~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~l~~n-~l~~~~~-~~~l~~L~~L~L 119 (466)
T 1o6v_A 45 LDQVTTLQADRL-GIKSID-GVEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNN-QIADITP-LANLTNLTGLTL 119 (466)
T ss_dssp HHTCCEEECCSS-CCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSS-CCCCCGG-GTTCTTCCEEEC
T ss_pred hccccEEecCCC-CCccCc-chhhhcCCCEEECCCCccCCchh-hhccccCCEEECCCC-ccccChh-hcCCCCCCEEEC
Confidence 467899999999 888887 48889999999999999999987 999999999999999 7777776 999999999999
Q ss_pred CCCcCcccCCccCcCCCCcceeCceEeCCCCCCCcccccccccCCceeEEeccCCCCCchhhhhcccCCCcCCceEEEEe
Q 003899 197 SNVDSLEEMPKGFGKLTCLLTLGTFVVGKDGGSGLRELKSLTHLQGTLQISKLENVKDVGDACEAQLNSKENLQALLLKW 276 (788)
Q Consensus 197 ~~~~~l~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~ 276 (788)
++|. +..+|. ++.+++|++|++..+..... ..+..+++|+.|.+..
T Consensus 120 ~~n~-l~~~~~-~~~l~~L~~L~l~~n~l~~~--------------------------------~~~~~l~~L~~L~l~~ 165 (466)
T 1o6v_A 120 FNNQ-ITDIDP-LKNLTNLNRLELSSNTISDI--------------------------------SALSGLTSLQQLSFGN 165 (466)
T ss_dssp CSSC-CCCCGG-GTTCTTCSEEEEEEEEECCC--------------------------------GGGTTCTTCSEEEEEE
T ss_pred CCCC-CCCChH-HcCCCCCCEEECCCCccCCC--------------------------------hhhccCCcccEeecCC
Confidence 9998 777765 78888888888765432110 0123334555555432
Q ss_pred ecCcccCccchhhhhhhcccCccccccceEEEEeeCCCCCCcccCCCCCCCeeEEEECCCCCCCCCCCCCCCCccEEEec
Q 003899 277 STRDVQNLDQCEFETHVLSVLKPHQDVQELTITGYGGTKFPIWLGDSSFSKLARLELCRCTSTSLPSVGQLPFLMELDIS 356 (788)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~L~~~~~~~l~~l~~l~~L~~L~l~ 356 (788)
. ...++. +. .+++|+.|++++|.+..++.+..+++|++|+++
T Consensus 166 ~-----------------------------------~~~~~~-~~--~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~ 207 (466)
T 1o6v_A 166 Q-----------------------------------VTDLKP-LA--NLTTLERLDISSNKVSDISVLAKLTNLESLIAT 207 (466)
T ss_dssp S-----------------------------------CCCCGG-GT--TCTTCCEEECCSSCCCCCGGGGGCTTCSEEECC
T ss_pred c-----------------------------------ccCchh-hc--cCCCCCEEECcCCcCCCChhhccCCCCCEEEec
Confidence 1 111111 11 455556666665555444555556666666666
Q ss_pred CCCCceEeCcccccCCCCCCCCCcceEecccccccccccccCCCCcccccCCcccEEeeecCcccccCCCCCCCCccEEE
Q 003899 357 GMDGVKSVGSEFYRRSCSVPFPSLETLSFSDMREWEEWIPCGAGQEVDEVFPKLRKLSLFNCHKLQGKLPKRLLLLETLV 436 (788)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~lp~~l~~L~~L~ 436 (788)
+|.... +.. .+ .+++|+.|+++++ .+..+. ....+++|+.|++++| .+.+ ++
T Consensus 208 ~n~l~~-~~~--~~-----~l~~L~~L~l~~n-~l~~~~-------~l~~l~~L~~L~l~~n-~l~~-~~---------- 259 (466)
T 1o6v_A 208 NNQISD-ITP--LG-----ILTNLDELSLNGN-QLKDIG-------TLASLTNLTDLDLANN-QISN-LA---------- 259 (466)
T ss_dssp SSCCCC-CGG--GG-----GCTTCCEEECCSS-CCCCCG-------GGGGCTTCSEEECCSS-CCCC-CG----------
T ss_pred CCcccc-ccc--cc-----ccCCCCEEECCCC-Ccccch-------hhhcCCCCCEEECCCC-cccc-ch----------
Confidence 653221 111 11 1445555555442 222221 2234667777777766 3331 11
Q ss_pred EeccCCcccccCCCCCccEEEeccCCcceecCCcCCCCccEEeccccccceeeccccccCCCCccEEEEecCcccchhhh
Q 003899 437 IKSCQQLLVTIQCLPALSELQIDGCERVVFSSPIDLSSLKSVHLAYVANEVVLAGLFEQGLPKLENLVIVEVREQAYLWQ 516 (788)
Q Consensus 437 l~~c~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~ 516 (788)
.+..+++|++|++++|.......+..+++|+.|++++|.. +.++. +..+++|+.|++++|......
T Consensus 260 ---------~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l-~~~~~--~~~l~~L~~L~L~~n~l~~~~-- 325 (466)
T 1o6v_A 260 ---------PLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQL-EDISP--ISNLKNLTYLTLYFNNISDIS-- 325 (466)
T ss_dssp ---------GGTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCC-SCCGG--GGGCTTCSEEECCSSCCSCCG--
T ss_pred ---------hhhcCCCCCEEECCCCccCccccccCCCccCeEEcCCCcc-cCchh--hcCCCCCCEEECcCCcCCCch--
Confidence 1455677777777777754444466677777777777543 33333 356677777777777655432
Q ss_pred cccccccCCCCCCeEEcccCCCccccccCccccccCCCCcccccceEEEEEecCccCcccccccccCCCCcceEEEecCC
Q 003899 517 SETRLLQDIRSLNRLHISRCPRLLSLVTDEEHDQQQPESPYRLRFLELKIFIYDLENLQSLPAGLHNLRHLQKIWISKCP 596 (788)
Q Consensus 517 ~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~l~~L~L~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~ 596 (788)
+ +..+++|++|++++|. +.. + ..+..+++|+.|++++|.
T Consensus 326 --~--~~~l~~L~~L~l~~n~-l~~-----------------------------------~-~~l~~l~~L~~L~l~~n~ 364 (466)
T 1o6v_A 326 --P--VSSLTKLQRLFFYNNK-VSD-----------------------------------V-SSLANLTNINWLSAGHNQ 364 (466)
T ss_dssp --G--GGGCTTCCEEECCSSC-CCC-----------------------------------C-GGGTTCTTCCEEECCSSC
T ss_pred --h--hccCccCCEeECCCCc-cCC-----------------------------------c-hhhccCCCCCEEeCCCCc
Confidence 2 5566777777776653 221 2 235557778888888764
Q ss_pred CCcccCCCCCCCCcccEEEeccccc
Q 003899 597 NLESFPEEGLPSAKLTELMIWRCEN 621 (788)
Q Consensus 597 ~l~~~~~~~~~~~~L~~L~l~~c~~ 621 (788)
+..++. ...+++|++|++++|+.
T Consensus 365 -l~~~~~-~~~l~~L~~L~l~~n~~ 387 (466)
T 1o6v_A 365 -ISDLTP-LANLTRITQLGLNDQAW 387 (466)
T ss_dssp -CCBCGG-GTTCTTCCEEECCCEEE
T ss_pred -cCccch-hhcCCCCCEEeccCCcc
Confidence 333333 55577788888877653
No 31
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.93 E-value=5.8e-25 Score=240.97 Aligned_cols=103 Identities=21% Similarity=0.268 Sum_probs=65.4
Q ss_pred CCeeEEEccCCcCcccc-cccccCCCCCceeeccCCccc-cc-chhhhccccCcEEEccCccchhhc-hhhhhcccCCce
Q 003899 118 PRLRVFSLHGYSNIIEL-PNEIENLKHLRFLNLSRTSIQ-IL-PESINSLYNLNTILLEDCYQLKKL-CNDMGNLKKLRH 193 (788)
Q Consensus 118 ~~Lr~L~L~~~~~l~~l-p~~~~~l~~L~~L~L~~~~i~-~l-p~~i~~L~~L~~L~L~~~~~l~~l-p~~i~~L~~L~~ 193 (788)
++|++|+|++| .+..+ |..|+++++|++|+|++|.+. .+ |..|..+++|++|++++| .+..+ |..++++++|++
T Consensus 30 ~~l~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~ 107 (455)
T 3v47_A 30 AHVNYVDLSLN-SIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN-QFLQLETGAFNGLANLEV 107 (455)
T ss_dssp TTCCEEECCSS-CCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTC-TTCEECTTTTTTCTTCCE
T ss_pred CccCEEEecCC-ccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCC-ccCccChhhccCcccCCE
Confidence 56777777777 66665 466677777777777777665 44 455677777777777777 44443 555777777777
Q ss_pred EecCCCcCcccCCcc--CcCCCCcceeCceE
Q 003899 194 LKSSNVDSLEEMPKG--FGKLTCLLTLGTFV 222 (788)
Q Consensus 194 L~l~~~~~l~~~p~~--i~~l~~L~~L~~~~ 222 (788)
|++++|.....+|.. ++.+++|++|++.+
T Consensus 108 L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~ 138 (455)
T 3v47_A 108 LTLTQCNLDGAVLSGNFFKPLTSLEMLVLRD 138 (455)
T ss_dssp EECTTSCCBTHHHHSSTTTTCTTCCEEECCS
T ss_pred EeCCCCCCCccccCcccccCcccCCEEECCC
Confidence 777777622223333 66666666666533
No 32
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.93 E-value=1.3e-25 Score=240.51 Aligned_cols=304 Identities=20% Similarity=0.168 Sum_probs=219.5
Q ss_pred cCCCceeEEEeccCCccccchhhhhHHH-HhCCCCCeeEEEccCCcCccccc-ccccCCCCCceeeccCCcccccc-hhh
Q 003899 85 CDVEHLRTFLPVNLSNYRINYLAWSVLQ-MLMNLPRLRVFSLHGYSNIIELP-NEIENLKHLRFLNLSRTSIQILP-ESI 161 (788)
Q Consensus 85 ~~~~~Lr~L~~~~~~~~~~~~~~~~~~~-~~~~l~~Lr~L~L~~~~~l~~lp-~~~~~l~~L~~L~L~~~~i~~lp-~~i 161 (788)
..+++++.|.+.+.. ...+|. .|..+++|++|++++| .+..+| ..|..+++|++|+|++|.+..+| ..+
T Consensus 42 ~~l~~l~~l~l~~~~-------l~~l~~~~~~~l~~L~~L~L~~n-~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 113 (390)
T 3o6n_A 42 ITLNNQKIVTFKNST-------MRKLPAALLDSFRQVELLNLNDL-QIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVF 113 (390)
T ss_dssp GGGCCCSEEEEESCE-------ESEECTHHHHHCCCCSEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTT
T ss_pred cccCCceEEEecCCc-------hhhCChhHhcccccCcEEECCCC-cccccChhhccCCCCcCEEECCCCCCCcCCHHHh
Confidence 357889999887763 144555 6889999999999999 888886 58899999999999999999884 668
Q ss_pred hccccCcEEEccCccchhhchhh-hhcccCCceEecCCCcCcccCCc-cCcCCCCcceeCceEeCCCCCCCccccccccc
Q 003899 162 NSLYNLNTILLEDCYQLKKLCND-MGNLKKLRHLKSSNVDSLEEMPK-GFGKLTCLLTLGTFVVGKDGGSGLRELKSLTH 239 (788)
Q Consensus 162 ~~L~~L~~L~L~~~~~l~~lp~~-i~~L~~L~~L~l~~~~~l~~~p~-~i~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~ 239 (788)
+.+++|++|++++| .+..+|.. ++.+++|++|++++|. +..++. .++.+++|++|++.++..... .
T Consensus 114 ~~l~~L~~L~L~~n-~l~~l~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~--------- 181 (390)
T 3o6n_A 114 QNVPLLTVLVLERN-DLSSLPRGIFHNTPKLTTLSMSNNN-LERIEDDTFQATTSLQNLQLSSNRLTHV-D--------- 181 (390)
T ss_dssp TTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC-CCBCCTTTTSSCTTCCEEECCSSCCSBC-C---------
T ss_pred cCCCCCCEEECCCC-ccCcCCHHHhcCCCCCcEEECCCCc-cCccChhhccCCCCCCEEECCCCcCCcc-c---------
Confidence 99999999999999 88899887 5899999999999998 666654 589999999999865543211 0
Q ss_pred CCceeEEeccCCCCCchhhhhcccCCCcCCceEEEEeecCcccCccchhhhhhhcccCccccccceEEEEeeCCCCCCcc
Q 003899 240 LQGTLQISKLENVKDVGDACEAQLNSKENLQALLLKWSTRDVQNLDQCEFETHVLSVLKPHQDVQELTITGYGGTKFPIW 319 (788)
Q Consensus 240 L~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~ 319 (788)
+..+++|+.|+++++.. ..+..+++|+.|+++++....+|..
T Consensus 182 -----------------------~~~l~~L~~L~l~~n~l---------------~~~~~~~~L~~L~l~~n~l~~~~~~ 223 (390)
T 3o6n_A 182 -----------------------LSLIPSLFHANVSYNLL---------------STLAIPIAVEELDASHNSINVVRGP 223 (390)
T ss_dssp -----------------------GGGCTTCSEEECCSSCC---------------SEEECCSSCSEEECCSSCCCEEECC
T ss_pred -----------------------cccccccceeecccccc---------------cccCCCCcceEEECCCCeeeecccc
Confidence 22234666666655443 2233456889999988887776653
Q ss_pred cCCCCCCCeeEEEECCCCCCCCCCCCCCCCccEEEecCCCCceEeCcccccCCCCCCCCCcceEecccccccccccccCC
Q 003899 320 LGDSSFSKLARLELCRCTSTSLPSVGQLPFLMELDISGMDGVKSVGSEFYRRSCSVPFPSLETLSFSDMREWEEWIPCGA 399 (788)
Q Consensus 320 ~~~~~~~~L~~L~L~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~ 399 (788)
.+++|+.|++++|.+...+.++.+++|++|++++|......+..+ .. +++|++|++++ +.+..++.
T Consensus 224 ----~~~~L~~L~l~~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~-~~-----l~~L~~L~L~~-n~l~~~~~--- 289 (390)
T 3o6n_A 224 ----VNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPF-VK-----MQRLERLYISN-NRLVALNL--- 289 (390)
T ss_dssp ----CCSSCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGG-TT-----CSSCCEEECCS-SCCCEEEC---
T ss_pred ----ccccccEEECCCCCCcccHHHcCCCCccEEECCCCcCCCcChhHc-cc-----cccCCEEECCC-CcCcccCc---
Confidence 357899999999999767788899999999999986444434433 22 88899999988 45555554
Q ss_pred CCcccccCCcccEEeeecCcccccCCCCCCCCccEEEEeccCCcccccCCCCCccEEEeccCCcceecCCcCCCCccEEe
Q 003899 400 GQEVDEVFPKLRKLSLFNCHKLQGKLPKRLLLLETLVIKSCQQLLVTIQCLPALSELQIDGCERVVFSSPIDLSSLKSVH 479 (788)
Q Consensus 400 ~~~~~~~~~~L~~L~l~~c~~l~~~lp~~l~~L~~L~l~~c~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~ 479 (788)
....+++|++|++++| .+. .+|. .+..+++|++|++++|..... .+..+++|+.|+
T Consensus 290 ---~~~~l~~L~~L~L~~n-~l~-~~~~------------------~~~~l~~L~~L~L~~N~i~~~-~~~~~~~L~~L~ 345 (390)
T 3o6n_A 290 ---YGQPIPTLKVLDLSHN-HLL-HVER------------------NQPQFDRLENLYLDHNSIVTL-KLSTHHTLKNLT 345 (390)
T ss_dssp ---SSSCCTTCCEEECCSS-CCC-CCGG------------------GHHHHTTCSEEECCSSCCCCC-CCCTTCCCSEEE
T ss_pred ---ccCCCCCCCEEECCCC-cce-ecCc------------------cccccCcCCEEECCCCcccee-CchhhccCCEEE
Confidence 4456888888888887 555 4543 122334445555555443222 234455566666
Q ss_pred ccccc
Q 003899 480 LAYVA 484 (788)
Q Consensus 480 l~~~~ 484 (788)
+++|+
T Consensus 346 l~~N~ 350 (390)
T 3o6n_A 346 LSHND 350 (390)
T ss_dssp CCSSC
T ss_pred cCCCC
Confidence 65543
No 33
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.93 E-value=7.8e-25 Score=230.62 Aligned_cols=303 Identities=16% Similarity=0.190 Sum_probs=161.5
Q ss_pred CCCCeeEEEccCCcCcccccccccCCCCCceeeccCCcccccchhhhccccCcEEEccCccchhhchhhhhcccCCceEe
Q 003899 116 NLPRLRVFSLHGYSNIIELPNEIENLKHLRFLNLSRTSIQILPESINSLYNLNTILLEDCYQLKKLCNDMGNLKKLRHLK 195 (788)
Q Consensus 116 ~l~~Lr~L~L~~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~ 195 (788)
.+++|++|+++++ .+..+| .+..+++|++|++++|.++.+|. +..+++|++|++++| .+..+| .+..+++|++|+
T Consensus 42 ~l~~L~~L~l~~~-~i~~~~-~~~~~~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n-~i~~~~-~~~~l~~L~~L~ 116 (347)
T 4fmz_A 42 ELESITKLVVAGE-KVASIQ-GIEYLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTN-KITDIS-ALQNLTNLRELY 116 (347)
T ss_dssp HHTTCSEEECCSS-CCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSS-CCCCCG-GGTTCTTCSEEE
T ss_pred hcccccEEEEeCC-ccccch-hhhhcCCccEEEccCCccccchh-hhcCCcCCEEEccCC-cccCch-HHcCCCcCCEEE
Confidence 4566777777777 666665 36677777777777777777766 777777777777777 666665 377777777777
Q ss_pred cCCCcCcccCCccCcCCCCcceeCceEeCCCCCCCcccccccccCCceeEEeccCCCCCchhhhhcccCCCcCCceEEEE
Q 003899 196 SSNVDSLEEMPKGFGKLTCLLTLGTFVVGKDGGSGLRELKSLTHLQGTLQISKLENVKDVGDACEAQLNSKENLQALLLK 275 (788)
Q Consensus 196 l~~~~~l~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~ 275 (788)
+++|. +..+|. +..+++|++|++.++.... .+ ..+..+++|+.|+
T Consensus 117 l~~n~-i~~~~~-~~~l~~L~~L~l~~n~~~~--~~-----------------------------~~~~~l~~L~~L~-- 161 (347)
T 4fmz_A 117 LNEDN-ISDISP-LANLTKMYSLNLGANHNLS--DL-----------------------------SPLSNMTGLNYLT-- 161 (347)
T ss_dssp CTTSC-CCCCGG-GTTCTTCCEEECTTCTTCC--CC-----------------------------GGGTTCTTCCEEE--
T ss_pred CcCCc-ccCchh-hccCCceeEEECCCCCCcc--cc-----------------------------cchhhCCCCcEEE--
Confidence 77776 555554 6666666666553321100 00 0012222333333
Q ss_pred eecCcccCccchhhhhhhcccCccccccceEEEEeeCCCCCCcccCCCCCCCeeEEEECCCCCCCCCCCCCCCCccEEEe
Q 003899 276 WSTRDVQNLDQCEFETHVLSVLKPHQDVQELTITGYGGTKFPIWLGDSSFSKLARLELCRCTSTSLPSVGQLPFLMELDI 355 (788)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~L~~~~~~~l~~l~~l~~L~~L~l 355 (788)
++++....++. +. .+++|+.|++++|.+..++.+..+++|+.|++
T Consensus 162 --------------------------------l~~~~~~~~~~-~~--~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l 206 (347)
T 4fmz_A 162 --------------------------------VTESKVKDVTP-IA--NLTDLYSLSLNYNQIEDISPLASLTSLHYFTA 206 (347)
T ss_dssp --------------------------------CCSSCCCCCGG-GG--GCTTCSEEECTTSCCCCCGGGGGCTTCCEEEC
T ss_pred --------------------------------ecCCCcCCchh-hc--cCCCCCEEEccCCcccccccccCCCccceeec
Confidence 33333222222 11 34444445554444433333444455555555
Q ss_pred cCCCCceEeCcccccCCCCCCCCCcceEecccccccccccccCCCCcccccCCcccEEeeecCcccccCCCCCCCCccEE
Q 003899 356 SGMDGVKSVGSEFYRRSCSVPFPSLETLSFSDMREWEEWIPCGAGQEVDEVFPKLRKLSLFNCHKLQGKLPKRLLLLETL 435 (788)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~lp~~l~~L~~L 435 (788)
++|... .++. .. .+++|++|+++++ .+..+. ....+++|++|++++| .+. .+
T Consensus 207 ~~n~l~-~~~~--~~-----~~~~L~~L~l~~n-~l~~~~-------~~~~l~~L~~L~l~~n-~l~-~~---------- 258 (347)
T 4fmz_A 207 YVNQIT-DITP--VA-----NMTRLNSLKIGNN-KITDLS-------PLANLSQLTWLEIGTN-QIS-DI---------- 258 (347)
T ss_dssp CSSCCC-CCGG--GG-----GCTTCCEEECCSS-CCCCCG-------GGTTCTTCCEEECCSS-CCC-CC----------
T ss_pred ccCCCC-CCch--hh-----cCCcCCEEEccCC-ccCCCc-------chhcCCCCCEEECCCC-ccC-CC----------
Confidence 444211 1111 01 1344444444332 111111 1223555555555554 232 11
Q ss_pred EEeccCCcccccCCCCCccEEEeccCCcceecCCcCCCCccEEeccccccceeeccccccCCCCccEEEEecCcccchhh
Q 003899 436 VIKSCQQLLVTIQCLPALSELQIDGCERVVFSSPIDLSSLKSVHLAYVANEVVLAGLFEQGLPKLENLVIVEVREQAYLW 515 (788)
Q Consensus 436 ~l~~c~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~ 515 (788)
..+..+++|++|++++|.......+..+++|+.|++++|.. +..+...+..+++|+.|++++|......
T Consensus 259 ---------~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l-~~~~~~~l~~l~~L~~L~L~~n~l~~~~- 327 (347)
T 4fmz_A 259 ---------NAVKDLTKLKMLNVGSNQISDISVLNNLSQLNSLFLNNNQL-GNEDMEVIGGLTNLTTLFLSQNHITDIR- 327 (347)
T ss_dssp ---------GGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCC-CGGGHHHHHTCTTCSEEECCSSSCCCCG-
T ss_pred ---------hhHhcCCCcCEEEccCCccCCChhhcCCCCCCEEECcCCcC-CCcChhHhhccccCCEEEccCCcccccc-
Confidence 12445566666666666644444455667777777777643 3333333466777888888887765543
Q ss_pred hcccccccCCCCCCeEEcccCC
Q 003899 516 QSETRLLQDIRSLNRLHISRCP 537 (788)
Q Consensus 516 ~~~~~~~~~l~~L~~L~l~~c~ 537 (788)
+ +..+++|++|++++|+
T Consensus 328 ---~--~~~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 328 ---P--LASLSKMDSADFANQV 344 (347)
T ss_dssp ---G--GGGCTTCSEESSSCC-
T ss_pred ---C--hhhhhccceeehhhhc
Confidence 2 6677788888887764
No 34
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.92 E-value=9.5e-24 Score=232.54 Aligned_cols=291 Identities=21% Similarity=0.223 Sum_probs=145.4
Q ss_pred CCeeEEEccCCcCccccc-ccccCCCCCceeeccCCccccc-chhhhccccCcEEEccCccchhhchhh-hhcccCCceE
Q 003899 118 PRLRVFSLHGYSNIIELP-NEIENLKHLRFLNLSRTSIQIL-PESINSLYNLNTILLEDCYQLKKLCND-MGNLKKLRHL 194 (788)
Q Consensus 118 ~~Lr~L~L~~~~~l~~lp-~~~~~l~~L~~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~~~l~~lp~~-i~~L~~L~~L 194 (788)
+++++|+|++| .+..++ ..|.++++|++|+|++|.|..+ |..|+++++|++|+|++| .+..+|.. +.++++|++|
T Consensus 32 ~~l~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L 109 (477)
T 2id5_A 32 TETRLLDLGKN-RIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSN-RLKLIPLGVFTGLSNLTKL 109 (477)
T ss_dssp TTCSEEECCSS-CCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCCSCCTTSSTTCTTCCEE
T ss_pred CCCcEEECCCC-ccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCC-cCCccCcccccCCCCCCEE
Confidence 35555555555 555553 4555555555665555555544 455555555555555555 45555543 4555555555
Q ss_pred ecCCCcCcccC-CccCcCCCCcceeCceEeCCCCCCCcccccccccCCceeEEeccCCCCCchhhhhcccCCCcCCceEE
Q 003899 195 KSSNVDSLEEM-PKGFGKLTCLLTLGTFVVGKDGGSGLRELKSLTHLQGTLQISKLENVKDVGDACEAQLNSKENLQALL 273 (788)
Q Consensus 195 ~l~~~~~l~~~-p~~i~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~ 273 (788)
++++|. +..+ |..+..+++|++|++
T Consensus 110 ~Ls~n~-i~~~~~~~~~~l~~L~~L~l----------------------------------------------------- 135 (477)
T 2id5_A 110 DISENK-IVILLDYMFQDLYNLKSLEV----------------------------------------------------- 135 (477)
T ss_dssp ECTTSC-CCEECTTTTTTCTTCCEEEE-----------------------------------------------------
T ss_pred ECCCCc-cccCChhHccccccCCEEEC-----------------------------------------------------
Confidence 555555 2222 233444444444443
Q ss_pred EEeecCcccCccchhhhhhhcccCccccccceEEEEeeCCCCCCcc-cCCCCCCCeeEEEECCCCCCCCC--CCCCCCCc
Q 003899 274 LKWSTRDVQNLDQCEFETHVLSVLKPHQDVQELTITGYGGTKFPIW-LGDSSFSKLARLELCRCTSTSLP--SVGQLPFL 350 (788)
Q Consensus 274 l~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~-~~~~~~~~L~~L~L~~~~~~~l~--~l~~l~~L 350 (788)
+.+.. .......+..+++|+.|+++++....+|.. +. .+++|+.|++++|.+..++ .+..+++|
T Consensus 136 -~~n~l----------~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~l~~L~~L~l~~n~i~~~~~~~~~~l~~L 202 (477)
T 2id5_A 136 -GDNDL----------VYISHRAFSGLNSLEQLTLEKCNLTSIPTEALS--HLHGLIVLRLRHLNINAIRDYSFKRLYRL 202 (477)
T ss_dssp -CCTTC----------CEECTTSSTTCTTCCEEEEESCCCSSCCHHHHT--TCTTCCEEEEESCCCCEECTTCSCSCTTC
T ss_pred -CCCcc----------ceeChhhccCCCCCCEEECCCCcCcccChhHhc--ccCCCcEEeCCCCcCcEeChhhcccCccc
Confidence 22222 111122344556667777766666555432 22 4556666666666552222 25555566
Q ss_pred cEEEecCCCCceEeCcccccCCCCCCCCCcceEecccccccccccccCCCCcccccCCcccEEeeecCcccccCCCCCCC
Q 003899 351 MELDISGMDGVKSVGSEFYRRSCSVPFPSLETLSFSDMREWEEWIPCGAGQEVDEVFPKLRKLSLFNCHKLQGKLPKRLL 430 (788)
Q Consensus 351 ~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~lp~~l~ 430 (788)
++|++++|..+..++...+ ...+|++|++++| .+. .+|.
T Consensus 203 ~~L~l~~~~~~~~~~~~~~------------------------------------~~~~L~~L~l~~n-~l~-~~~~--- 241 (477)
T 2id5_A 203 KVLEISHWPYLDTMTPNCL------------------------------------YGLNLTSLSITHC-NLT-AVPY--- 241 (477)
T ss_dssp CEEEEECCTTCCEECTTTT------------------------------------TTCCCSEEEEESS-CCC-SCCH---
T ss_pred ceeeCCCCccccccCcccc------------------------------------cCccccEEECcCC-ccc-ccCH---
Confidence 6666655554444433221 1234555555554 333 2331
Q ss_pred CccEEEEeccCCcccccCCCCCccEEEeccCCccee--cCCcCCCCccEEeccccccceeeccccccCCCCccEEEEecC
Q 003899 431 LLETLVIKSCQQLLVTIQCLPALSELQIDGCERVVF--SSPIDLSSLKSVHLAYVANEVVLAGLFEQGLPKLENLVIVEV 508 (788)
Q Consensus 431 ~L~~L~l~~c~~l~~~~~~~~~L~~L~l~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 508 (788)
..+..+++|++|++++|..... ..+..+++|+.|++++|. +..+....+..+++|+.|++++|
T Consensus 242 --------------~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N 306 (477)
T 2id5_A 242 --------------LAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQ-LAVVEPYAFRGLNYLRVLNVSGN 306 (477)
T ss_dssp --------------HHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSC-CSEECTTTBTTCTTCCEEECCSS
T ss_pred --------------HHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCc-cceECHHHhcCcccCCEEECCCC
Confidence 1233344444444444442221 123345555555555543 23333333456666777777766
Q ss_pred cccchhhhcccccccCCCCCCeEEcccCC
Q 003899 509 REQAYLWQSETRLLQDIRSLNRLHISRCP 537 (788)
Q Consensus 509 ~~~~~~~~~~~~~~~~l~~L~~L~l~~c~ 537 (788)
...... +..+..+++|++|++++++
T Consensus 307 ~l~~~~----~~~~~~l~~L~~L~l~~N~ 331 (477)
T 2id5_A 307 QLTTLE----ESVFHSVGNLETLILDSNP 331 (477)
T ss_dssp CCSCCC----GGGBSCGGGCCEEECCSSC
T ss_pred cCceeC----HhHcCCCcccCEEEccCCC
Confidence 655443 4455666777777776654
No 35
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.91 E-value=3.9e-24 Score=234.39 Aligned_cols=349 Identities=16% Similarity=0.134 Sum_probs=203.7
Q ss_pred CceeEEEeccCCccccchhhhhHHHHhCCCCCeeEEEccCCcCcc-ccc-ccccCCCCCceeeccCCccccc-chhhhcc
Q 003899 88 EHLRTFLPVNLSNYRINYLAWSVLQMLMNLPRLRVFSLHGYSNII-ELP-NEIENLKHLRFLNLSRTSIQIL-PESINSL 164 (788)
Q Consensus 88 ~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~l~-~lp-~~~~~l~~L~~L~L~~~~i~~l-p~~i~~L 164 (788)
++++.|.+.++. +....|..|.++++|++|++++| .+. .+| ..|.++++|++|+|++|.+..+ |..++++
T Consensus 30 ~~l~~L~Ls~n~------i~~~~~~~~~~l~~L~~L~L~~n-~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l 102 (455)
T 3v47_A 30 AHVNYVDLSLNS------IAELNETSFSRLQDLQFLKVEQQ-TPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGL 102 (455)
T ss_dssp TTCCEEECCSSC------CCEECTTTTSSCTTCCEEECCCC-STTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTC
T ss_pred CccCEEEecCCc------cCcCChhHhccCccccEEECcCC-cccceECcccccccccCCEEeCCCCccCccChhhccCc
Confidence 789999988864 33333558999999999999999 654 664 7799999999999999999977 7889999
Q ss_pred ccCcEEEccCccchh-hchhh--hhcccCCceEecCCCcCcccC-Ccc-CcCCCCcceeCceEeCCCCCCCccccccccc
Q 003899 165 YNLNTILLEDCYQLK-KLCND--MGNLKKLRHLKSSNVDSLEEM-PKG-FGKLTCLLTLGTFVVGKDGGSGLRELKSLTH 239 (788)
Q Consensus 165 ~~L~~L~L~~~~~l~-~lp~~--i~~L~~L~~L~l~~~~~l~~~-p~~-i~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~ 239 (788)
++|++|++++| .+. .+|.. ++.+++|++|++++|. +..+ |.. ++.+++|++|++.++...... ...+..+.
T Consensus 103 ~~L~~L~L~~n-~l~~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~l~~l~- 178 (455)
T 3v47_A 103 ANLEVLTLTQC-NLDGAVLSGNFFKPLTSLEMLVLRDNN-IKKIQPASFFLNMRRFHVLDLTFNKVKSIC-EEDLLNFQ- 178 (455)
T ss_dssp TTCCEEECTTS-CCBTHHHHSSTTTTCTTCCEEECCSSB-CCSCCCCGGGGGCTTCCEEECTTCCBSCCC-TTTSGGGT-
T ss_pred ccCCEEeCCCC-CCCccccCcccccCcccCCEEECCCCc-cCccCcccccCCCCcccEEeCCCCcccccC-hhhhhccc-
Confidence 99999999999 554 45655 8999999999999999 5555 555 889999999988554332100 00000000
Q ss_pred CCceeEEeccCCCCCchhhhhcccCCCcCCceEEEEeecCcccCccchhhhhhhcccCccccccceEEEEeeCCCCCCcc
Q 003899 240 LQGTLQISKLENVKDVGDACEAQLNSKENLQALLLKWSTRDVQNLDQCEFETHVLSVLKPHQDVQELTITGYGGTKFPIW 319 (788)
Q Consensus 240 L~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~ 319 (788)
..+|+.| +++++....++..
T Consensus 179 --------------------------~~~L~~L----------------------------------~l~~n~l~~~~~~ 198 (455)
T 3v47_A 179 --------------------------GKHFTLL----------------------------------RLSSITLQDMNEY 198 (455)
T ss_dssp --------------------------TCEEEEE----------------------------------ECTTCBCTTCSTT
T ss_pred --------------------------ccccccc----------------------------------ccccCcccccchh
Confidence 0122333 3333322222211
Q ss_pred cC-------CCCCCCeeEEEECCCCC-CCCCC----CCCCCCccEEEecCCCCceEeCcccccCCCCCCCCCcceEeccc
Q 003899 320 LG-------DSSFSKLARLELCRCTS-TSLPS----VGQLPFLMELDISGMDGVKSVGSEFYRRSCSVPFPSLETLSFSD 387 (788)
Q Consensus 320 ~~-------~~~~~~L~~L~L~~~~~-~~l~~----l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 387 (788)
.. ...+++|+.|++++|.+ ...|. ....++|+.|++++|......... ..++.+..
T Consensus 199 ~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-------~~~~~~~~----- 266 (455)
T 3v47_A 199 WLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGH-------TNFKDPDN----- 266 (455)
T ss_dssp CTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTC-------CSSCCCCT-----
T ss_pred hccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccch-------hhhccCcc-----
Confidence 00 01235566666666655 22221 112356666666665432211000 00111000
Q ss_pred ccccccccccCCCCcccccCCcccEEeeecCcccccCCC---CCCCCccEEEEeccCCc---ccccCCCCCccEEEeccC
Q 003899 388 MREWEEWIPCGAGQEVDEVFPKLRKLSLFNCHKLQGKLP---KRLLLLETLVIKSCQQL---LVTIQCLPALSELQIDGC 461 (788)
Q Consensus 388 ~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~lp---~~l~~L~~L~l~~c~~l---~~~~~~~~~L~~L~l~~~ 461 (788)
... .....++|++|++++| .+.+..| ..+++|++|++++|... ...+..+++|++|++++|
T Consensus 267 ------~~~------~~~~~~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N 333 (455)
T 3v47_A 267 ------FTF------KGLEASGVKTCDLSKS-KIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQN 333 (455)
T ss_dssp ------TTT------GGGTTSCCCEEECCSS-CCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred ------ccc------ccccccCceEEEecCc-cccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCC
Confidence 000 1112345556666555 3332333 22344444444444321 124455666666676666
Q ss_pred Ccce--ecCCcCCCCccEEeccccccceeeccccccCCCCccEEEEecCcccchhhhcccccccCCCCCCeEEcccCC
Q 003899 462 ERVV--FSSPIDLSSLKSVHLAYVANEVVLAGLFEQGLPKLENLVIVEVREQAYLWQSETRLLQDIRSLNRLHISRCP 537 (788)
Q Consensus 462 ~~~~--~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~ 537 (788)
.... ...+..+++|+.|++++|.. +.++...+..+++|++|++++|...... +..+..+++|++|++++|+
T Consensus 334 ~l~~~~~~~~~~l~~L~~L~Ls~N~l-~~~~~~~~~~l~~L~~L~L~~N~l~~~~----~~~~~~l~~L~~L~l~~N~ 406 (455)
T 3v47_A 334 FLGSIDSRMFENLDKLEVLDLSYNHI-RALGDQSFLGLPNLKELALDTNQLKSVP----DGIFDRLTSLQKIWLHTNP 406 (455)
T ss_dssp CCCEECGGGGTTCTTCCEEECCSSCC-CEECTTTTTTCTTCCEEECCSSCCSCCC----TTTTTTCTTCCEEECCSSC
T ss_pred ccCCcChhHhcCcccCCEEECCCCcc-cccChhhccccccccEEECCCCccccCC----HhHhccCCcccEEEccCCC
Confidence 6332 23345567777777776543 3333333466777777777777665543 4456677777777777765
No 36
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.91 E-value=2.1e-24 Score=243.81 Aligned_cols=300 Identities=19% Similarity=0.181 Sum_probs=217.0
Q ss_pred CCCceeEEEeccCCccccchhhhhHHH-HhCCCCCeeEEEccCCcCccccc-ccccCCCCCceeeccCCcccccc-hhhh
Q 003899 86 DVEHLRTFLPVNLSNYRINYLAWSVLQ-MLMNLPRLRVFSLHGYSNIIELP-NEIENLKHLRFLNLSRTSIQILP-ESIN 162 (788)
Q Consensus 86 ~~~~Lr~L~~~~~~~~~~~~~~~~~~~-~~~~l~~Lr~L~L~~~~~l~~lp-~~~~~l~~L~~L~L~~~~i~~lp-~~i~ 162 (788)
.+++++.+.+.++. ...+|. .|..+++|++|+|++| .+..+| ..|+.+++|++|+|++|.+..+| ..++
T Consensus 49 ~l~~l~~l~l~~~~-------l~~lp~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 120 (597)
T 3oja_B 49 TLNNQKIVTFKNST-------MRKLPAALLDSFRQVELLNLNDL-QIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQ 120 (597)
T ss_dssp GGCCCSEEEESSCE-------ESEECTHHHHHCCCCSEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred cCCCceEEEeeCCC-------CCCcCHHHHccCCCCcEEECCCC-CCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHc
Confidence 56788998887753 144555 7889999999999999 888886 58999999999999999999885 5579
Q ss_pred ccccCcEEEccCccchhhchhh-hhcccCCceEecCCCcCcccCC-ccCcCCCCcceeCceEeCCCCCCCcccccccccC
Q 003899 163 SLYNLNTILLEDCYQLKKLCND-MGNLKKLRHLKSSNVDSLEEMP-KGFGKLTCLLTLGTFVVGKDGGSGLRELKSLTHL 240 (788)
Q Consensus 163 ~L~~L~~L~L~~~~~l~~lp~~-i~~L~~L~~L~l~~~~~l~~~p-~~i~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L 240 (788)
.+++|++|+|++| .+..+|.. ++.+++|++|++++|. +..++ ..++.+++|++|++.++..... .
T Consensus 121 ~l~~L~~L~L~~n-~l~~l~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~-~---------- 187 (597)
T 3oja_B 121 NVPLLTVLVLERN-DLSSLPRGIFHNTPKLTTLSMSNNN-LERIEDDTFQATTSLQNLQLSSNRLTHV-D---------- 187 (597)
T ss_dssp TCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC-CCBCCTTTTTTCTTCCEEECTTSCCSBC-C----------
T ss_pred CCCCCCEEEeeCC-CCCCCCHHHhccCCCCCEEEeeCCc-CCCCChhhhhcCCcCcEEECcCCCCCCc-C----------
Confidence 9999999999999 78888887 5899999999999998 65555 4599999999999855433211 0
Q ss_pred CceeEEeccCCCCCchhhhhcccCCCcCCceEEEEeecCcccCccchhhhhhhcccCccccccceEEEEeeCCCCCCccc
Q 003899 241 QGTLQISKLENVKDVGDACEAQLNSKENLQALLLKWSTRDVQNLDQCEFETHVLSVLKPHQDVQELTITGYGGTKFPIWL 320 (788)
Q Consensus 241 ~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~ 320 (788)
+..+++|+.|+++++.. ..+..+.+|+.|+++++....+|..+
T Consensus 188 ----------------------~~~l~~L~~L~l~~n~l---------------~~l~~~~~L~~L~ls~n~l~~~~~~~ 230 (597)
T 3oja_B 188 ----------------------LSLIPSLFHANVSYNLL---------------STLAIPIAVEELDASHNSINVVRGPV 230 (597)
T ss_dssp ----------------------GGGCTTCSEEECCSSCC---------------SEEECCTTCSEEECCSSCCCEEECSC
T ss_pred ----------------------hhhhhhhhhhhcccCcc---------------ccccCCchhheeeccCCccccccccc
Confidence 22235666666655543 22345568899999988877766543
Q ss_pred CCCCCCCeeEEEECCCCCCCCCCCCCCCCccEEEecCCCCceEeCcccccCCCCCCCCCcceEecccccccccccccCCC
Q 003899 321 GDSSFSKLARLELCRCTSTSLPSVGQLPFLMELDISGMDGVKSVGSEFYRRSCSVPFPSLETLSFSDMREWEEWIPCGAG 400 (788)
Q Consensus 321 ~~~~~~~L~~L~L~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~ 400 (788)
+++|+.|++++|.+...+.++.+++|+.|++++|......+..+.. +++|+.|++++ +.+..++.
T Consensus 231 ----~~~L~~L~L~~n~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~------l~~L~~L~Ls~-N~l~~l~~---- 295 (597)
T 3oja_B 231 ----NVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVK------MQRLERLYISN-NRLVALNL---- 295 (597)
T ss_dssp ----CSCCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGTT------CSSCCEEECTT-SCCCEEEC----
T ss_pred ----CCCCCEEECCCCCCCCChhhccCCCCCEEECCCCccCCCCHHHhcC------ccCCCEEECCC-CCCCCCCc----
Confidence 4789999999999966677889999999999998655444444422 88999999988 45555554
Q ss_pred CcccccCCcccEEeeecCcccccCCCC---CCCCccEEEEeccCCcccccCCCCCccEEEeccCC
Q 003899 401 QEVDEVFPKLRKLSLFNCHKLQGKLPK---RLLLLETLVIKSCQQLLVTIQCLPALSELQIDGCE 462 (788)
Q Consensus 401 ~~~~~~~~~L~~L~l~~c~~l~~~lp~---~l~~L~~L~l~~c~~l~~~~~~~~~L~~L~l~~~~ 462 (788)
....+|+|+.|++++| .+. .+|. .+++|+.|++++|......+..+++|+.|++++|+
T Consensus 296 --~~~~l~~L~~L~Ls~N-~l~-~i~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~L~~L~l~~N~ 356 (597)
T 3oja_B 296 --YGQPIPTLKVLDLSHN-HLL-HVERNQPQFDRLENLYLDHNSIVTLKLSTHHTLKNLTLSHND 356 (597)
T ss_dssp --SSSCCTTCCEEECCSS-CCC-CCGGGHHHHTTCSEEECCSSCCCCCCCCTTCCCSEEECCSSC
T ss_pred --ccccCCCCcEEECCCC-CCC-ccCcccccCCCCCEEECCCCCCCCcChhhcCCCCEEEeeCCC
Confidence 4456888999999887 555 4553 23445555555544332233334444444444443
No 37
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.91 E-value=5.1e-24 Score=224.35 Aligned_cols=300 Identities=18% Similarity=0.210 Sum_probs=146.3
Q ss_pred cCCCceeEEEeccCCccccchhhhhHHHHhCCCCCeeEEEccCCcCcccccccccCCCCCceeeccCCcccccchhhhcc
Q 003899 85 CDVEHLRTFLPVNLSNYRINYLAWSVLQMLMNLPRLRVFSLHGYSNIIELPNEIENLKHLRFLNLSRTSIQILPESINSL 164 (788)
Q Consensus 85 ~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~L 164 (788)
..+++|+.|.+.+..- ..++ .+..+++|++|++++| .+..+|. +.++++|++|++++|.++.+| .+..+
T Consensus 41 ~~l~~L~~L~l~~~~i-------~~~~-~~~~~~~L~~L~l~~n-~i~~~~~-~~~l~~L~~L~L~~n~i~~~~-~~~~l 109 (347)
T 4fmz_A 41 EELESITKLVVAGEKV-------ASIQ-GIEYLTNLEYLNLNGN-QITDISP-LSNLVKLTNLYIGTNKITDIS-ALQNL 109 (347)
T ss_dssp HHHTTCSEEECCSSCC-------CCCT-TGGGCTTCCEEECCSS-CCCCCGG-GTTCTTCCEEECCSSCCCCCG-GGTTC
T ss_pred hhcccccEEEEeCCcc-------ccch-hhhhcCCccEEEccCC-ccccchh-hhcCCcCCEEEccCCcccCch-HHcCC
Confidence 3455566665555421 1122 2555666666666666 6666654 666666666666666666654 36666
Q ss_pred ccCcEEEccCccchhhchhhhhcccCCceEecCCCcCcccCCccCcCCCCcceeCceEeCCCCCCCcccccccccCCcee
Q 003899 165 YNLNTILLEDCYQLKKLCNDMGNLKKLRHLKSSNVDSLEEMPKGFGKLTCLLTLGTFVVGKDGGSGLRELKSLTHLQGTL 244 (788)
Q Consensus 165 ~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l 244 (788)
++|++|++++| .+..+|. +..+++|++|++++|.....++ .++.+++|++|++.++....... +..
T Consensus 110 ~~L~~L~l~~n-~i~~~~~-~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~---~~~-------- 175 (347)
T 4fmz_A 110 TNLRELYLNED-NISDISP-LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP---IAN-------- 175 (347)
T ss_dssp TTCSEEECTTS-CCCCCGG-GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCCCGG---GGG--------
T ss_pred CcCCEEECcCC-cccCchh-hccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCCchh---hcc--------
Confidence 66666666666 5555555 6666666666666665333333 36666666666654433221111 111
Q ss_pred EEeccCCCCCchhhhhcccCCCcCCceEEEEeecCcccCccchhhhhhhcccCccccccceEEEEeeCCCCCCcccCCCC
Q 003899 245 QISKLENVKDVGDACEAQLNSKENLQALLLKWSTRDVQNLDQCEFETHVLSVLKPHQDVQELTITGYGGTKFPIWLGDSS 324 (788)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~ 324 (788)
+++|+.|+++++.. . ....+..+++|+.|+++++.....+. +. .
T Consensus 176 ---------------------l~~L~~L~l~~n~l----------~--~~~~~~~l~~L~~L~l~~n~l~~~~~-~~--~ 219 (347)
T 4fmz_A 176 ---------------------LTDLYSLSLNYNQI----------E--DISPLASLTSLHYFTAYVNQITDITP-VA--N 219 (347)
T ss_dssp ---------------------CTTCSEEECTTSCC----------C--CCGGGGGCTTCCEEECCSSCCCCCGG-GG--G
T ss_pred ---------------------CCCCCEEEccCCcc----------c--ccccccCCCccceeecccCCCCCCch-hh--c
Confidence 22333333332222 0 00113333444444444444433332 11 3
Q ss_pred CCCeeEEEECCCCCCCCCCCCCCCCccEEEecCCCCceEeCcccccCCCCCCCCCcceEecccccccccccccCCCCccc
Q 003899 325 FSKLARLELCRCTSTSLPSVGQLPFLMELDISGMDGVKSVGSEFYRRSCSVPFPSLETLSFSDMREWEEWIPCGAGQEVD 404 (788)
Q Consensus 325 ~~~L~~L~L~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~ 404 (788)
+++|+.|++++|.+..++.+..+++|++|++++|. +..++ . . ..+++|++|+++++ .+..+. ..
T Consensus 220 ~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~-l~~~~-~-~-----~~l~~L~~L~l~~n-~l~~~~-------~~ 283 (347)
T 4fmz_A 220 MTRLNSLKIGNNKITDLSPLANLSQLTWLEIGTNQ-ISDIN-A-V-----KDLTKLKMLNVGSN-QISDIS-------VL 283 (347)
T ss_dssp CTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSC-CCCCG-G-G-----TTCTTCCEEECCSS-CCCCCG-------GG
T ss_pred CCcCCEEEccCCccCCCcchhcCCCCCEEECCCCc-cCCCh-h-H-----hcCCCcCEEEccCC-ccCCCh-------hh
Confidence 44555555555554334444455555555555542 22221 1 1 11455555555543 222221 22
Q ss_pred ccCCcccEEeeecCcccccCCC---CCCCCccEEEEeccCCcc-cccCCCCCccEEEeccCC
Q 003899 405 EVFPKLRKLSLFNCHKLQGKLP---KRLLLLETLVIKSCQQLL-VTIQCLPALSELQIDGCE 462 (788)
Q Consensus 405 ~~~~~L~~L~l~~c~~l~~~lp---~~l~~L~~L~l~~c~~l~-~~~~~~~~L~~L~l~~~~ 462 (788)
..+++|+.|++++| .+.+..| ..+++|++|++++|+... ..+..+++|++|++++|.
T Consensus 284 ~~l~~L~~L~L~~n-~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 284 NNLSQLNSLFLNNN-QLGNEDMEVIGGLTNLTTLFLSQNHITDIRPLASLSKMDSADFANQV 344 (347)
T ss_dssp GGCTTCSEEECCSS-CCCGGGHHHHHTCTTCSEEECCSSSCCCCGGGGGCTTCSEESSSCC-
T ss_pred cCCCCCCEEECcCC-cCCCcChhHhhccccCCEEEccCCccccccChhhhhccceeehhhhc
Confidence 34555555555555 3332222 234555555555554221 124557777777777775
No 38
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.90 E-value=4.5e-23 Score=227.17 Aligned_cols=221 Identities=17% Similarity=0.161 Sum_probs=163.9
Q ss_pred CCceeEEEeccCCccccchhhhhHHHHhCCCCCeeEEEccCCcCcccc-cccccCCCCCceeeccCCcccccch-hhhcc
Q 003899 87 VEHLRTFLPVNLSNYRINYLAWSVLQMLMNLPRLRVFSLHGYSNIIEL-PNEIENLKHLRFLNLSRTSIQILPE-SINSL 164 (788)
Q Consensus 87 ~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~l~~l-p~~~~~l~~L~~L~L~~~~i~~lp~-~i~~L 164 (788)
.++++.|.+.++. +....+..|.++++|++|+|++| .+..+ |..|+++++|++|+|++|.++.+|. .+..+
T Consensus 31 ~~~l~~L~L~~n~------l~~~~~~~~~~l~~L~~L~L~~n-~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 103 (477)
T 2id5_A 31 PTETRLLDLGKNR------IKTLNQDEFASFPHLEELELNEN-IVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGL 103 (477)
T ss_dssp CTTCSEEECCSSC------CCEECTTTTTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTC
T ss_pred CCCCcEEECCCCc------cceECHhHccCCCCCCEEECCCC-ccCEeChhhhhCCccCCEEECCCCcCCccCcccccCC
Confidence 3689999888864 32333448999999999999999 88887 6889999999999999999999975 57899
Q ss_pred ccCcEEEccCccchhhc-hhhhhcccCCceEecCCCcCcccC-CccCcCCCCcceeCceEeCCCCCCCcccccccccCCc
Q 003899 165 YNLNTILLEDCYQLKKL-CNDMGNLKKLRHLKSSNVDSLEEM-PKGFGKLTCLLTLGTFVVGKDGGSGLRELKSLTHLQG 242 (788)
Q Consensus 165 ~~L~~L~L~~~~~l~~l-p~~i~~L~~L~~L~l~~~~~l~~~-p~~i~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~ 242 (788)
++|++|+|++| .+..+ |..+..+++|++|++++|. +..+ |..++.+++|++|++..+.
T Consensus 104 ~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~------------------ 163 (477)
T 2id5_A 104 SNLTKLDISEN-KIVILLDYMFQDLYNLKSLEVGDND-LVYISHRAFSGLNSLEQLTLEKCN------------------ 163 (477)
T ss_dssp TTCCEEECTTS-CCCEECTTTTTTCTTCCEEEECCTT-CCEECTTSSTTCTTCCEEEEESCC------------------
T ss_pred CCCCEEECCCC-ccccCChhHccccccCCEEECCCCc-cceeChhhccCCCCCCEEECCCCc------------------
Confidence 99999999999 55555 5568999999999999998 5544 4457777777777654331
Q ss_pred eeEEeccCCCCCchhhhhcccCCCcCCceEEEEeecCcccCccchhhhhhhcccCccccccceEEEEeeCCCCCCcccCC
Q 003899 243 TLQISKLENVKDVGDACEAQLNSKENLQALLLKWSTRDVQNLDQCEFETHVLSVLKPHQDVQELTITGYGGTKFPIWLGD 322 (788)
Q Consensus 243 ~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~ 322 (788)
. .......+..+++|+.|+++++....++....
T Consensus 164 ------------------------------------l----------~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~- 196 (477)
T 2id5_A 164 ------------------------------------L----------TSIPTEALSHLHGLIVLRLRHLNINAIRDYSF- 196 (477)
T ss_dssp ------------------------------------C----------SSCCHHHHTTCTTCCEEEEESCCCCEECTTCS-
T ss_pred ------------------------------------C----------cccChhHhcccCCCcEEeCCCCcCcEeChhhc-
Confidence 1 00111234556899999999998877654332
Q ss_pred CCCCCeeEEEECCCCC-CCCCC-CCCCCCccEEEecCCCCceEeCcccccCCCCCCCCCcceEeccc
Q 003899 323 SSFSKLARLELCRCTS-TSLPS-VGQLPFLMELDISGMDGVKSVGSEFYRRSCSVPFPSLETLSFSD 387 (788)
Q Consensus 323 ~~~~~L~~L~L~~~~~-~~l~~-l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 387 (788)
..+++|+.|++++|.. ..++. .....+|++|++++|. +..++...+.. +++|+.|++++
T Consensus 197 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~-----l~~L~~L~Ls~ 257 (477)
T 2id5_A 197 KRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCN-LTAVPYLAVRH-----LVYLRFLNLSY 257 (477)
T ss_dssp CSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSC-CCSCCHHHHTT-----CTTCCEEECCS
T ss_pred ccCcccceeeCCCCccccccCcccccCccccEEECcCCc-ccccCHHHhcC-----ccccCeeECCC
Confidence 2689999999999987 55554 5556799999999985 44444322222 55555555554
No 39
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.90 E-value=7.1e-23 Score=219.13 Aligned_cols=303 Identities=18% Similarity=0.188 Sum_probs=185.0
Q ss_pred CCCCeeEEEccCCcCccccccc-ccCCCCCceeeccCCcccccc-hhhhccccCcEEEccCccchhhchh-hhhcccCCc
Q 003899 116 NLPRLRVFSLHGYSNIIELPNE-IENLKHLRFLNLSRTSIQILP-ESINSLYNLNTILLEDCYQLKKLCN-DMGNLKKLR 192 (788)
Q Consensus 116 ~l~~Lr~L~L~~~~~l~~lp~~-~~~l~~L~~L~L~~~~i~~lp-~~i~~L~~L~~L~L~~~~~l~~lp~-~i~~L~~L~ 192 (788)
.++++++|+++++ .++.+|.. |.++++|++|+|++|.+..+| ..++.+++|++|++++| .+..+|. .++.+++|+
T Consensus 43 ~l~~l~~l~l~~~-~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~ 120 (390)
T 3o6n_A 43 TLNNQKIVTFKNS-TMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFN-AIRYLPPHVFQNVPLLT 120 (390)
T ss_dssp GGCCCSEEEEESC-EESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCC
T ss_pred ccCCceEEEecCC-chhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCC-CCCcCCHHHhcCCCCCC
Confidence 3678999999999 89999855 689999999999999999885 58999999999999999 6766654 489999999
Q ss_pred eEecCCCcCcccCCcc-CcCCCCcceeCceEeCCCCCCCcccccccccCCceeEEeccCCCCCchhhhhcccCCCcCCce
Q 003899 193 HLKSSNVDSLEEMPKG-FGKLTCLLTLGTFVVGKDGGSGLRELKSLTHLQGTLQISKLENVKDVGDACEAQLNSKENLQA 271 (788)
Q Consensus 193 ~L~l~~~~~l~~~p~~-i~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~ 271 (788)
+|++++|. +..+|.. ++.+++|++|++.++.... + ....+..+++|+.
T Consensus 121 ~L~L~~n~-l~~l~~~~~~~l~~L~~L~L~~n~l~~------------~------------------~~~~~~~l~~L~~ 169 (390)
T 3o6n_A 121 VLVLERND-LSSLPRGIFHNTPKLTTLSMSNNNLER------------I------------------EDDTFQATTSLQN 169 (390)
T ss_dssp EEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCB------------C------------------CTTTTSSCTTCCE
T ss_pred EEECCCCc-cCcCCHHHhcCCCCCcEEECCCCccCc------------c------------------ChhhccCCCCCCE
Confidence 99999998 8888887 5889999999875442210 0 0011233334444
Q ss_pred EEEEeecCcccCccchhhhhhhcccCccccccceEEEEeeCCCCCCcccCCCCCCCeeEEEECCCCCCCCCCCCCCCCcc
Q 003899 272 LLLKWSTRDVQNLDQCEFETHVLSVLKPHQDVQELTITGYGGTKFPIWLGDSSFSKLARLELCRCTSTSLPSVGQLPFLM 351 (788)
Q Consensus 272 L~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~L~~~~~~~l~~l~~l~~L~ 351 (788)
|++ +++....++ + ..+++|+.|++++|.+..++ ..++|+
T Consensus 170 L~l----------------------------------~~n~l~~~~--~--~~l~~L~~L~l~~n~l~~~~---~~~~L~ 208 (390)
T 3o6n_A 170 LQL----------------------------------SSNRLTHVD--L--SLIPSLFHANVSYNLLSTLA---IPIAVE 208 (390)
T ss_dssp EEC----------------------------------CSSCCSBCC--G--GGCTTCSEEECCSSCCSEEE---CCSSCS
T ss_pred EEC----------------------------------CCCcCCccc--c--ccccccceeecccccccccC---CCCcce
Confidence 444 443333322 1 13455555555555442221 223566
Q ss_pred EEEecCCCCceEeCcccccCCCCCCCCCcceEecccccccccccccCCCCcccccCCcccEEeeecCcccccCCCCCCCC
Q 003899 352 ELDISGMDGVKSVGSEFYRRSCSVPFPSLETLSFSDMREWEEWIPCGAGQEVDEVFPKLRKLSLFNCHKLQGKLPKRLLL 431 (788)
Q Consensus 352 ~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~lp~~l~~ 431 (788)
+|++++|. +..++... +++|+.|++.++ .+.... ....+++|++|++++| .+.+..|
T Consensus 209 ~L~l~~n~-l~~~~~~~--------~~~L~~L~l~~n-~l~~~~-------~l~~l~~L~~L~Ls~n-~l~~~~~----- 265 (390)
T 3o6n_A 209 ELDASHNS-INVVRGPV--------NVELTILKLQHN-NLTDTA-------WLLNYPGLVEVDLSYN-ELEKIMY----- 265 (390)
T ss_dssp EEECCSSC-CCEEECCC--------CSSCCEEECCSS-CCCCCG-------GGGGCTTCSEEECCSS-CCCEEES-----
T ss_pred EEECCCCe-eeeccccc--------cccccEEECCCC-CCcccH-------HHcCCCCccEEECCCC-cCCCcCh-----
Confidence 66666653 22222211 455666665553 222221 2344666666666666 3332222
Q ss_pred ccEEEEeccCCcccccCCCCCccEEEeccCCccee-cCCcCCCCccEEeccccccceeeccccccCCCCccEEEEecCcc
Q 003899 432 LETLVIKSCQQLLVTIQCLPALSELQIDGCERVVF-SSPIDLSSLKSVHLAYVANEVVLAGLFEQGLPKLENLVIVEVRE 510 (788)
Q Consensus 432 L~~L~l~~c~~l~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 510 (788)
..+..+++|++|++++|..... .....+++|+.|++++|. ++.++.. +..+++|+.|++++|..
T Consensus 266 -------------~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~-~~~l~~L~~L~L~~N~i 330 (390)
T 3o6n_A 266 -------------HPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNH-LLHVERN-QPQFDRLENLYLDHNSI 330 (390)
T ss_dssp -------------GGGTTCSSCCEEECCSSCCCEEECSSSCCTTCCEEECCSSC-CCCCGGG-HHHHTTCSEEECCSSCC
T ss_pred -------------hHccccccCCEEECCCCcCcccCcccCCCCCCCEEECCCCc-ceecCcc-ccccCcCCEEECCCCcc
Confidence 2344455666666666653322 223345666666666653 3344443 24566777777777765
Q ss_pred cchhhhcccccccCCCCCCeEEcccCC
Q 003899 511 QAYLWQSETRLLQDIRSLNRLHISRCP 537 (788)
Q Consensus 511 ~~~~~~~~~~~~~~l~~L~~L~l~~c~ 537 (788)
... .+..+++|++|++++++
T Consensus 331 ~~~-------~~~~~~~L~~L~l~~N~ 350 (390)
T 3o6n_A 331 VTL-------KLSTHHTLKNLTLSHND 350 (390)
T ss_dssp CCC-------CCCTTCCCSEEECCSSC
T ss_pred cee-------CchhhccCCEEEcCCCC
Confidence 432 24556677777777654
No 40
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.88 E-value=4e-22 Score=225.21 Aligned_cols=303 Identities=17% Similarity=0.179 Sum_probs=188.2
Q ss_pred CCCCeeEEEccCCcCccccccc-ccCCCCCceeeccCCcccccc-hhhhccccCcEEEccCccchhhchhh-hhcccCCc
Q 003899 116 NLPRLRVFSLHGYSNIIELPNE-IENLKHLRFLNLSRTSIQILP-ESINSLYNLNTILLEDCYQLKKLCND-MGNLKKLR 192 (788)
Q Consensus 116 ~l~~Lr~L~L~~~~~l~~lp~~-~~~l~~L~~L~L~~~~i~~lp-~~i~~L~~L~~L~L~~~~~l~~lp~~-i~~L~~L~ 192 (788)
.+.++++|++++| .+..+|.. |.++++|++|+|++|.|..+| ..|+.+++|++|+|++| .+..+|.. ++.+++|+
T Consensus 49 ~l~~l~~l~l~~~-~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~ 126 (597)
T 3oja_B 49 TLNNQKIVTFKNS-TMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFN-AIRYLPPHVFQNVPLLT 126 (597)
T ss_dssp GGCCCSEEEESSC-EESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCC
T ss_pred cCCCceEEEeeCC-CCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCC-cCCCCCHHHHcCCCCCC
Confidence 3678999999999 89999854 689999999999999999885 58999999999999999 67667655 79999999
Q ss_pred eEecCCCcCcccCCcc-CcCCCCcceeCceEeCCCCCCCcccccccccCCceeEEeccCCCCCchhhhhcccCCCcCCce
Q 003899 193 HLKSSNVDSLEEMPKG-FGKLTCLLTLGTFVVGKDGGSGLRELKSLTHLQGTLQISKLENVKDVGDACEAQLNSKENLQA 271 (788)
Q Consensus 193 ~L~l~~~~~l~~~p~~-i~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~ 271 (788)
+|++++|. +..+|.. ++.+++|++|++.++...+
T Consensus 127 ~L~L~~n~-l~~l~~~~~~~l~~L~~L~Ls~N~l~~-------------------------------------------- 161 (597)
T 3oja_B 127 VLVLERND-LSSLPRGIFHNTPKLTTLSMSNNNLER-------------------------------------------- 161 (597)
T ss_dssp EEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCB--------------------------------------------
T ss_pred EEEeeCCC-CCCCCHHHhccCCCCCEEEeeCCcCCC--------------------------------------------
Confidence 99999998 8888877 5889999998875442210
Q ss_pred EEEEeecCcccCccchhhhhhhcccCccccccceEEEEeeCCCCCCcccCCCCCCCeeEEEECCCCCCCCCCCCCCCCcc
Q 003899 272 LLLKWSTRDVQNLDQCEFETHVLSVLKPHQDVQELTITGYGGTKFPIWLGDSSFSKLARLELCRCTSTSLPSVGQLPFLM 351 (788)
Q Consensus 272 L~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~L~~~~~~~l~~l~~l~~L~ 351 (788)
..+..+..+++|+.|++++|....++. ..+++|+.|++++|.+..+ ...++|+
T Consensus 162 --------------------~~~~~~~~l~~L~~L~L~~N~l~~~~~----~~l~~L~~L~l~~n~l~~l---~~~~~L~ 214 (597)
T 3oja_B 162 --------------------IEDDTFQATTSLQNLQLSSNRLTHVDL----SLIPSLFHANVSYNLLSTL---AIPIAVE 214 (597)
T ss_dssp --------------------CCTTTTTTCTTCCEEECTTSCCSBCCG----GGCTTCSEEECCSSCCSEE---ECCTTCS
T ss_pred --------------------CChhhhhcCCcCcEEECcCCCCCCcCh----hhhhhhhhhhcccCccccc---cCCchhh
Confidence 001122233444444444444333321 1355666666666554222 2234566
Q ss_pred EEEecCCCCceEeCcccccCCCCCCCCCcceEecccccccccccccCCCCcccccCCcccEEeeecCcccccCCCCCCCC
Q 003899 352 ELDISGMDGVKSVGSEFYRRSCSVPFPSLETLSFSDMREWEEWIPCGAGQEVDEVFPKLRKLSLFNCHKLQGKLPKRLLL 431 (788)
Q Consensus 352 ~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~lp~~l~~ 431 (788)
.|++++|. +..++... +++|+.|+++++ .+.... ....+++|+.|++++| .+.+..|
T Consensus 215 ~L~ls~n~-l~~~~~~~--------~~~L~~L~L~~n-~l~~~~-------~l~~l~~L~~L~Ls~N-~l~~~~~----- 271 (597)
T 3oja_B 215 ELDASHNS-INVVRGPV--------NVELTILKLQHN-NLTDTA-------WLLNYPGLVEVDLSYN-ELEKIMY----- 271 (597)
T ss_dssp EEECCSSC-CCEEECSC--------CSCCCEEECCSS-CCCCCG-------GGGGCTTCSEEECCSS-CCCEEES-----
T ss_pred eeeccCCc-cccccccc--------CCCCCEEECCCC-CCCCCh-------hhccCCCCCEEECCCC-ccCCCCH-----
Confidence 66666664 22322211 455666666553 222211 3344666666766665 3432222
Q ss_pred ccEEEEeccCCcccccCCCCCccEEEeccCCccee-cCCcCCCCccEEeccccccceeeccccccCCCCccEEEEecCcc
Q 003899 432 LETLVIKSCQQLLVTIQCLPALSELQIDGCERVVF-SSPIDLSSLKSVHLAYVANEVVLAGLFEQGLPKLENLVIVEVRE 510 (788)
Q Consensus 432 L~~L~l~~c~~l~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 510 (788)
..+..+++|++|++++|..... .....+++|+.|++++|. +..+|.. +..+++|+.|++++|..
T Consensus 272 -------------~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~Ls~N~-l~~i~~~-~~~l~~L~~L~L~~N~l 336 (597)
T 3oja_B 272 -------------HPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNH-LLHVERN-QPQFDRLENLYLDHNSI 336 (597)
T ss_dssp -------------GGGTTCSSCCEEECTTSCCCEEECSSSCCTTCCEEECCSSC-CCCCGGG-HHHHTTCSEEECCSSCC
T ss_pred -------------HHhcCccCCCEEECCCCCCCCCCcccccCCCCcEEECCCCC-CCccCcc-cccCCCCCEEECCCCCC
Confidence 2344556666666666663332 223346667777776654 3344443 25566777777777765
Q ss_pred cchhhhcccccccCCCCCCeEEcccCC
Q 003899 511 QAYLWQSETRLLQDIRSLNRLHISRCP 537 (788)
Q Consensus 511 ~~~~~~~~~~~~~~l~~L~~L~l~~c~ 537 (788)
... .+..+++|++|++++|+
T Consensus 337 ~~~-------~~~~~~~L~~L~l~~N~ 356 (597)
T 3oja_B 337 VTL-------KLSTHHTLKNLTLSHND 356 (597)
T ss_dssp CCC-------CCCTTCCCSEEECCSSC
T ss_pred CCc-------ChhhcCCCCEEEeeCCC
Confidence 432 24556677777777654
No 41
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.88 E-value=4e-22 Score=206.80 Aligned_cols=231 Identities=19% Similarity=0.306 Sum_probs=160.9
Q ss_pred CCCCCeeEEEccCCcCcccccccccCCCCCceeeccCCcccccchhhhccccCcEEEccCccchhhchhhhhcccCCceE
Q 003899 115 MNLPRLRVFSLHGYSNIIELPNEIENLKHLRFLNLSRTSIQILPESINSLYNLNTILLEDCYQLKKLCNDMGNLKKLRHL 194 (788)
Q Consensus 115 ~~l~~Lr~L~L~~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L 194 (788)
....++++|+|++| .+..+|..+.++++|++|+|++|.+..+|..++.+++|++|++++| .+..+|..++++++|++|
T Consensus 78 ~~~~~l~~L~L~~n-~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n-~l~~lp~~l~~l~~L~~L 155 (328)
T 4fcg_A 78 ATQPGRVALELRSV-PLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARN-PLRALPASIASLNRLREL 155 (328)
T ss_dssp HTSTTCCEEEEESS-CCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESC-CCCCCCGGGGGCTTCCEE
T ss_pred ccccceeEEEccCC-CchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCC-ccccCcHHHhcCcCCCEE
Confidence 35688999999999 8999999999999999999999999999999999999999999999 777999999999999999
Q ss_pred ecCCCcCcccCCccCcCCCCcceeCceEeCCCCCCCcccccccccCCceeEEeccCCCCCchhhhhcccCCCcCCceEEE
Q 003899 195 KSSNVDSLEEMPKGFGKLTCLLTLGTFVVGKDGGSGLRELKSLTHLQGTLQISKLENVKDVGDACEAQLNSKENLQALLL 274 (788)
Q Consensus 195 ~l~~~~~l~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l 274 (788)
++++|.....+|..++... . ...+.++++|+.|++
T Consensus 156 ~L~~n~~~~~~p~~~~~~~------~---------------------------------------~~~~~~l~~L~~L~L 190 (328)
T 4fcg_A 156 SIRACPELTELPEPLASTD------A---------------------------------------SGEHQGLVNLQSLRL 190 (328)
T ss_dssp EEEEETTCCCCCSCSEEEC----------------------------------------------CCCEEESTTCCEEEE
T ss_pred ECCCCCCccccChhHhhcc------c---------------------------------------hhhhccCCCCCEEEC
Confidence 9999886777877654310 0 001222345555666
Q ss_pred EeecCcccCccchhhhhhhcccCccccccceEEEEeeCCCCCCcccCCCCCCCeeEEEECCCCC-CCCCC-CCCCCCccE
Q 003899 275 KWSTRDVQNLDQCEFETHVLSVLKPHQDVQELTITGYGGTKFPIWLGDSSFSKLARLELCRCTS-TSLPS-VGQLPFLME 352 (788)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~L~~~~~-~~l~~-l~~l~~L~~ 352 (788)
+++.. . .++..+..+++|+.|++++|....+|..+. .+++|+.|++++|.. ..+|. ++.+++|++
T Consensus 191 ~~n~l----------~-~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~--~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~ 257 (328)
T 4fcg_A 191 EWTGI----------R-SLPASIANLQNLKSLKIRNSPLSALGPAIH--HLPKLEELDLRGCTALRNYPPIFGGRAPLKR 257 (328)
T ss_dssp EEECC----------C-CCCGGGGGCTTCCEEEEESSCCCCCCGGGG--GCTTCCEEECTTCTTCCBCCCCTTCCCCCCE
T ss_pred cCCCc----------C-cchHhhcCCCCCCEEEccCCCCCcCchhhc--cCCCCCEEECcCCcchhhhHHHhcCCCCCCE
Confidence 55544 1 223345556667777777776666666554 566777777777666 55554 666777777
Q ss_pred EEecCCCCceEeCcccccCCCCCCCCCcceEecccccccccccccCCCCcccccCCcccEEeeec
Q 003899 353 LDISGMDGVKSVGSEFYRRSCSVPFPSLETLSFSDMREWEEWIPCGAGQEVDEVFPKLRKLSLFN 417 (788)
Q Consensus 353 L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 417 (788)
|++++|...+.++..+.. +++|+.|++++++....++. ..+.+++|+.+.+..
T Consensus 258 L~L~~n~~~~~~p~~~~~------l~~L~~L~L~~n~~~~~iP~------~l~~L~~L~~l~l~~ 310 (328)
T 4fcg_A 258 LILKDCSNLLTLPLDIHR------LTQLEKLDLRGCVNLSRLPS------LIAQLPANCIILVPP 310 (328)
T ss_dssp EECTTCTTCCBCCTTGGG------CTTCCEEECTTCTTCCCCCG------GGGGSCTTCEEECCG
T ss_pred EECCCCCchhhcchhhhc------CCCCCEEeCCCCCchhhccH------HHhhccCceEEeCCH
Confidence 777776665555544322 55666666665555555544 444555555555543
No 42
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.86 E-value=6.1e-21 Score=198.99 Aligned_cols=289 Identities=17% Similarity=0.134 Sum_probs=163.7
Q ss_pred CeeEEEccCCcCcccccccccCCCCCceeeccCCcccccch-hhhccccCcEEEccCccchhhc-hhhhhcccCCceEec
Q 003899 119 RLRVFSLHGYSNIIELPNEIENLKHLRFLNLSRTSIQILPE-SINSLYNLNTILLEDCYQLKKL-CNDMGNLKKLRHLKS 196 (788)
Q Consensus 119 ~Lr~L~L~~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~~l-p~~i~~L~~L~~L~l 196 (788)
++++++++++ .+..+|..+. ++|++|+|++|.|+.+|. .++.+++|++|++++| .+..+ |..++.+++|++|++
T Consensus 32 ~l~~l~~~~~-~l~~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L 107 (330)
T 1xku_A 32 HLRVVQCSDL-GLEKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINN-KISKISPGAFAPLVKLERLYL 107 (330)
T ss_dssp ETTEEECTTS-CCCSCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSS-CCCCBCTTTTTTCTTCCEEEC
T ss_pred CCeEEEecCC-CccccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCC-cCCeeCHHHhcCCCCCCEEEC
Confidence 4556666665 5555554442 356666666666665543 4566666666666665 44444 445666666666666
Q ss_pred CCCcCcccCCccCcCCCCcceeCceEeCCCCCCCcccccccccCCceeEEeccCCCCCchhhhhcccCCCcCCceEEEEe
Q 003899 197 SNVDSLEEMPKGFGKLTCLLTLGTFVVGKDGGSGLRELKSLTHLQGTLQISKLENVKDVGDACEAQLNSKENLQALLLKW 276 (788)
Q Consensus 197 ~~~~~l~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~ 276 (788)
++|. +..+|..+. ++|++|++.++.... .....+.++++|+.|+++.
T Consensus 108 s~n~-l~~l~~~~~--~~L~~L~l~~n~l~~------------------------------~~~~~~~~l~~L~~L~l~~ 154 (330)
T 1xku_A 108 SKNQ-LKELPEKMP--KTLQELRVHENEITK------------------------------VRKSVFNGLNQMIVVELGT 154 (330)
T ss_dssp CSSC-CSBCCSSCC--TTCCEEECCSSCCCB------------------------------BCHHHHTTCTTCCEEECCS
T ss_pred CCCc-CCccChhhc--ccccEEECCCCcccc------------------------------cCHhHhcCCccccEEECCC
Confidence 6665 555555443 455555543321110 0011133344555555544
Q ss_pred ecCcccCccchhhhhhhcccCccccccceEEEEeeCCCCCCcccCCCCCCCeeEEEECCCCCCCC-C-CCCCCCCccEEE
Q 003899 277 STRDVQNLDQCEFETHVLSVLKPHQDVQELTITGYGGTKFPIWLGDSSFSKLARLELCRCTSTSL-P-SVGQLPFLMELD 354 (788)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~L~~~~~~~l-~-~l~~l~~L~~L~ 354 (788)
+... ........+..+++|+.|+++++....+|..+ +++|+.|++++|.+..+ + .+..+++|++|+
T Consensus 155 n~l~--------~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~----~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 222 (330)
T 1xku_A 155 NPLK--------SSGIENGAFQGMKKLSYIRIADTNITTIPQGL----PPSLTELHLDGNKITKVDAASLKGLNNLAKLG 222 (330)
T ss_dssp SCCC--------GGGBCTTGGGGCTTCCEEECCSSCCCSCCSSC----CTTCSEEECTTSCCCEECTGGGTTCTTCCEEE
T ss_pred CcCC--------ccCcChhhccCCCCcCEEECCCCccccCCccc----cccCCEEECCCCcCCccCHHHhcCCCCCCEEE
Confidence 4330 01122344566778888888888877777654 37889999999888433 3 388888999999
Q ss_pred ecCCCCceEeCcccccCCCCCCCCCcceEecccccccccccccCCCCcccccCCcccEEeeecCcccccCCCC-CCCCcc
Q 003899 355 ISGMDGVKSVGSEFYRRSCSVPFPSLETLSFSDMREWEEWIPCGAGQEVDEVFPKLRKLSLFNCHKLQGKLPK-RLLLLE 433 (788)
Q Consensus 355 l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~lp~-~l~~L~ 433 (788)
+++|. +..++...+.. +++|++|+++++ .+..++. ....+++|++|++++| .+. .++. .+...
T Consensus 223 Ls~n~-l~~~~~~~~~~-----l~~L~~L~L~~N-~l~~lp~------~l~~l~~L~~L~l~~N-~i~-~~~~~~f~~~- 286 (330)
T 1xku_A 223 LSFNS-ISAVDNGSLAN-----TPHLRELHLNNN-KLVKVPG------GLADHKYIQVVYLHNN-NIS-AIGSNDFCPP- 286 (330)
T ss_dssp CCSSC-CCEECTTTGGG-----STTCCEEECCSS-CCSSCCT------TTTTCSSCCEEECCSS-CCC-CCCTTSSSCS-
T ss_pred CCCCc-CceeChhhccC-----CCCCCEEECCCC-cCccCCh------hhccCCCcCEEECCCC-cCC-ccChhhcCCc-
Confidence 98885 44444332222 788888888874 4555544 4456788888888887 555 4442 11100
Q ss_pred EEEEeccCCcccccCCCCCccEEEeccCCcc----eecCCcCCCCccEEecccc
Q 003899 434 TLVIKSCQQLLVTIQCLPALSELQIDGCERV----VFSSPIDLSSLKSVHLAYV 483 (788)
Q Consensus 434 ~L~l~~c~~l~~~~~~~~~L~~L~l~~~~~~----~~~~~~~~~~L~~L~l~~~ 483 (788)
......+.++.+++++|+.. ....+..+++++.+++++|
T Consensus 287 -----------~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 287 -----------GYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329 (330)
T ss_dssp -----------SCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC---
T ss_pred -----------ccccccccccceEeecCcccccccCccccccccceeEEEeccc
Confidence 00112355666677666632 2234455667777777664
No 43
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.86 E-value=4.8e-21 Score=199.92 Aligned_cols=289 Identities=14% Similarity=0.138 Sum_probs=181.3
Q ss_pred CeeEEEccCCcCcccccccccCCCCCceeeccCCccccc-chhhhccccCcEEEccCccchhhc-hhhhhcccCCceEec
Q 003899 119 RLRVFSLHGYSNIIELPNEIENLKHLRFLNLSRTSIQIL-PESINSLYNLNTILLEDCYQLKKL-CNDMGNLKKLRHLKS 196 (788)
Q Consensus 119 ~Lr~L~L~~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~~~l~~l-p~~i~~L~~L~~L~l 196 (788)
++++++++++ .+..+|..+. ++|++|++++|.+..+ |..+..+++|++|++++| .+..+ |..++++++|++|++
T Consensus 34 ~l~~l~~~~~-~l~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L 109 (332)
T 2ft3_A 34 HLRVVQCSDL-GLKAVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNN-KISKIHEKAFSPLRKLQKLYI 109 (332)
T ss_dssp ETTEEECCSS-CCSSCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCCEECGGGSTTCTTCCEEEC
T ss_pred cCCEEECCCC-CccccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCC-ccCccCHhHhhCcCCCCEEEC
Confidence 5777888777 7777776553 5778888888877776 456777888888888877 55555 556777888888888
Q ss_pred CCCcCcccCCccCcCCCCcceeCceEeCCCCCCCcccccccccCCceeEEeccCCCCCchhhhhcccCCCcCCceEEEEe
Q 003899 197 SNVDSLEEMPKGFGKLTCLLTLGTFVVGKDGGSGLRELKSLTHLQGTLQISKLENVKDVGDACEAQLNSKENLQALLLKW 276 (788)
Q Consensus 197 ~~~~~l~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~ 276 (788)
++|. +..+|..+. ++|++|++.++.... + ....+..+++|+.|++++
T Consensus 110 ~~n~-l~~l~~~~~--~~L~~L~l~~n~i~~------------~------------------~~~~~~~l~~L~~L~l~~ 156 (332)
T 2ft3_A 110 SKNH-LVEIPPNLP--SSLVELRIHDNRIRK------------V------------------PKGVFSGLRNMNCIEMGG 156 (332)
T ss_dssp CSSC-CCSCCSSCC--TTCCEEECCSSCCCC------------C------------------CSGGGSSCSSCCEEECCS
T ss_pred CCCc-CCccCcccc--ccCCEEECCCCccCc------------c------------------CHhHhCCCccCCEEECCC
Confidence 8777 667776655 677777764432211 0 001134455666666665
Q ss_pred ecCcccCccchhhhhhhcccCccccccceEEEEeeCCCCCCcccCCCCCCCeeEEEECCCCCCCCC--CCCCCCCccEEE
Q 003899 277 STRDVQNLDQCEFETHVLSVLKPHQDVQELTITGYGGTKFPIWLGDSSFSKLARLELCRCTSTSLP--SVGQLPFLMELD 354 (788)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~L~~~~~~~l~--~l~~l~~L~~L~ 354 (788)
+... .....+..+..+ +|+.|+++++....+|..+ +++|+.|++++|.+..++ .+..+++|++|+
T Consensus 157 n~l~--------~~~~~~~~~~~l-~L~~L~l~~n~l~~l~~~~----~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~ 223 (332)
T 2ft3_A 157 NPLE--------NSGFEPGAFDGL-KLNYLRISEAKLTGIPKDL----PETLNELHLDHNKIQAIELEDLLRYSKLYRLG 223 (332)
T ss_dssp CCCB--------GGGSCTTSSCSC-CCSCCBCCSSBCSSCCSSS----CSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCB
T ss_pred Cccc--------cCCCCcccccCC-ccCEEECcCCCCCccCccc----cCCCCEEECCCCcCCccCHHHhcCCCCCCEEE
Confidence 5440 011223444455 8888888888888877654 378899999999884444 488899999999
Q ss_pred ecCCCCceEeCcccccCCCCCCCCCcceEecccccccccccccCCCCcccccCCcccEEeeecCcccccCCCC-CCCCcc
Q 003899 355 ISGMDGVKSVGSEFYRRSCSVPFPSLETLSFSDMREWEEWIPCGAGQEVDEVFPKLRKLSLFNCHKLQGKLPK-RLLLLE 433 (788)
Q Consensus 355 l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~lp~-~l~~L~ 433 (788)
+++|. +..++...+.. +++|++|+++++ .+..++. ....+++|+.|++++| .+. .++. .+....
T Consensus 224 L~~N~-l~~~~~~~~~~-----l~~L~~L~L~~N-~l~~lp~------~l~~l~~L~~L~l~~N-~l~-~~~~~~~~~~~ 288 (332)
T 2ft3_A 224 LGHNQ-IRMIENGSLSF-----LPTLRELHLDNN-KLSRVPA------GLPDLKLLQVVYLHTN-NIT-KVGVNDFCPVG 288 (332)
T ss_dssp CCSSC-CCCCCTTGGGG-----CTTCCEEECCSS-CCCBCCT------TGGGCTTCCEEECCSS-CCC-BCCTTSSSCSS
T ss_pred CCCCc-CCcCChhHhhC-----CCCCCEEECCCC-cCeecCh------hhhcCccCCEEECCCC-CCC-ccChhHccccc
Confidence 99885 44444332322 788888888874 5555554 4566888888888887 555 3432 111000
Q ss_pred EEEEeccCCcccccCCCCCccEEEeccCCcc----eecCCcCCCCccEEeccccc
Q 003899 434 TLVIKSCQQLLVTIQCLPALSELQIDGCERV----VFSSPIDLSSLKSVHLAYVA 484 (788)
Q Consensus 434 ~L~l~~c~~l~~~~~~~~~L~~L~l~~~~~~----~~~~~~~~~~L~~L~l~~~~ 484 (788)
.....+.|+.|++++|+.. ....+..+++|+.+++++|.
T Consensus 289 ------------~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 289 ------------FGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp ------------CCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred ------------cccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 0011345666666666532 12334456667777766653
No 44
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.85 E-value=8e-21 Score=197.02 Aligned_cols=216 Identities=20% Similarity=0.261 Sum_probs=175.9
Q ss_pred CCCCCceeeccCCcccccchhhhccccCcEEEccCccchhhchhhhhcccCCceEecCCCcCcccCCccCcCCCCcceeC
Q 003899 140 NLKHLRFLNLSRTSIQILPESINSLYNLNTILLEDCYQLKKLCNDMGNLKKLRHLKSSNVDSLEEMPKGFGKLTCLLTLG 219 (788)
Q Consensus 140 ~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~i~~l~~L~~L~ 219 (788)
...++++|+|++|.++.+|..++++++|++|+|++| .+..+|..++++++|++|++++|. +..+|..++.+++|++|+
T Consensus 79 ~~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n-~l~~lp~~~~~l~~L~~L~Ls~n~-l~~lp~~l~~l~~L~~L~ 156 (328)
T 4fcg_A 79 TQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAA-GLMELPDTMQQFAGLETLTLARNP-LRALPASIASLNRLRELS 156 (328)
T ss_dssp TSTTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESS-CCCCCCSCGGGGTTCSEEEEESCC-CCCCCGGGGGCTTCCEEE
T ss_pred cccceeEEEccCCCchhcChhhhhCCCCCEEECCCC-CccchhHHHhccCCCCEEECCCCc-cccCcHHHhcCcCCCEEE
Confidence 457899999999999999999999999999999999 777999999999999999999998 779999999999999999
Q ss_pred ceEeCCCCCCCcccccccccCCceeEEeccCCCCCchhhhhcccCCCcCCceEEEEeecCcccCccchhhhhhhcccCcc
Q 003899 220 TFVVGKDGGSGLRELKSLTHLQGTLQISKLENVKDVGDACEAQLNSKENLQALLLKWSTRDVQNLDQCEFETHVLSVLKP 299 (788)
Q Consensus 220 ~~~~~~~~~~~~~~l~~L~~L~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~ 299 (788)
+.++...+ .+. ..+... .....+..
T Consensus 157 L~~n~~~~-----------~~p-------------------------~~~~~~-------------------~~~~~~~~ 181 (328)
T 4fcg_A 157 IRACPELT-----------ELP-------------------------EPLAST-------------------DASGEHQG 181 (328)
T ss_dssp EEEETTCC-----------CCC-------------------------SCSEEE-------------------C-CCCEEE
T ss_pred CCCCCCcc-----------ccC-------------------------hhHhhc-------------------cchhhhcc
Confidence 87654211 000 000000 11233566
Q ss_pred ccccceEEEEeeCCCCCCcccCCCCCCCeeEEEECCCCCCCCC-CCCCCCCccEEEecCCCCceEeCcccccCCCCCCCC
Q 003899 300 HQDVQELTITGYGGTKFPIWLGDSSFSKLARLELCRCTSTSLP-SVGQLPFLMELDISGMDGVKSVGSEFYRRSCSVPFP 378 (788)
Q Consensus 300 ~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~L~~~~~~~l~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 378 (788)
+++|+.|++++|....+|.++. .+++|+.|++++|.+..+| .++.+++|++|++++|...+.++..+.. ++
T Consensus 182 l~~L~~L~L~~n~l~~lp~~l~--~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~------l~ 253 (328)
T 4fcg_A 182 LVNLQSLRLEWTGIRSLPASIA--NLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGG------RA 253 (328)
T ss_dssp STTCCEEEEEEECCCCCCGGGG--GCTTCCEEEEESSCCCCCCGGGGGCTTCCEEECTTCTTCCBCCCCTTC------CC
T ss_pred CCCCCEEECcCCCcCcchHhhc--CCCCCCEEEccCCCCCcCchhhccCCCCCEEECcCCcchhhhHHHhcC------CC
Confidence 7999999999999999998876 7999999999999996666 4889999999999999887777665433 89
Q ss_pred CcceEecccccccccccccCCCCcccccCCcccEEeeecCcccccCCCC
Q 003899 379 SLETLSFSDMREWEEWIPCGAGQEVDEVFPKLRKLSLFNCHKLQGKLPK 427 (788)
Q Consensus 379 ~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~lp~ 427 (788)
+|++|+++++.....++. ....+++|+.|++++|+.+. .+|.
T Consensus 254 ~L~~L~L~~n~~~~~~p~------~~~~l~~L~~L~L~~n~~~~-~iP~ 295 (328)
T 4fcg_A 254 PLKRLILKDCSNLLTLPL------DIHRLTQLEKLDLRGCVNLS-RLPS 295 (328)
T ss_dssp CCCEEECTTCTTCCBCCT------TGGGCTTCCEEECTTCTTCC-CCCG
T ss_pred CCCEEECCCCCchhhcch------hhhcCCCCCEEeCCCCCchh-hccH
Confidence 999999999877777765 56678999999999985554 7775
No 45
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.85 E-value=3.8e-22 Score=205.76 Aligned_cols=249 Identities=16% Similarity=0.197 Sum_probs=158.7
Q ss_pred CceeEEEeccCCccccchhhh--hHHHHhCCCCCeeEEEccC-CcCcccccccccCCCCCceeeccCCccc-ccchhhhc
Q 003899 88 EHLRTFLPVNLSNYRINYLAW--SVLQMLMNLPRLRVFSLHG-YSNIIELPNEIENLKHLRFLNLSRTSIQ-ILPESINS 163 (788)
Q Consensus 88 ~~Lr~L~~~~~~~~~~~~~~~--~~~~~~~~l~~Lr~L~L~~-~~~l~~lp~~~~~l~~L~~L~L~~~~i~-~lp~~i~~ 163 (788)
.+++.|.+.++. +.+ .+|..|.++++|++|++++ |.....+|..|+++++|++|+|++|.+. .+|..++.
T Consensus 50 ~~l~~L~L~~~~------l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~ 123 (313)
T 1ogq_A 50 YRVNNLDLSGLN------LPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQ 123 (313)
T ss_dssp CCEEEEEEECCC------CSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGG
T ss_pred ceEEEEECCCCC------ccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhC
Confidence 456666665543 223 4555677777777777774 5223356777777777777777777776 56777777
Q ss_pred cccCcEEEccCccchhhchhhhhcccCCceEecCCCcCcccCCccCcCCC-CcceeCceEeCCCCCCCcccccccccCCc
Q 003899 164 LYNLNTILLEDCYQLKKLCNDMGNLKKLRHLKSSNVDSLEEMPKGFGKLT-CLLTLGTFVVGKDGGSGLRELKSLTHLQG 242 (788)
Q Consensus 164 L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~i~~l~-~L~~L~~~~~~~~~~~~~~~l~~L~~L~~ 242 (788)
+++|++|++++|.....+|..++.+++|++|++++|.....+|..++.++ +|++|++..+...+
T Consensus 124 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~--------------- 188 (313)
T 1ogq_A 124 IKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTG--------------- 188 (313)
T ss_dssp CTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEE---------------
T ss_pred CCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeec---------------
Confidence 77777777777733336777777777777777777773336777777776 77777664432110
Q ss_pred eeEEeccCCCCCchhhhhcccCCCcCCceEEEEeecCcccCccchhhhhhhcccCccccccceEEEEeeCCCCCCcccCC
Q 003899 243 TLQISKLENVKDVGDACEAQLNSKENLQALLLKWSTRDVQNLDQCEFETHVLSVLKPHQDVQELTITGYGGTKFPIWLGD 322 (788)
Q Consensus 243 ~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~ 322 (788)
.....+..+. |+.|+++.+.. ....+..+..+++|+.|+++++.....+..+.
T Consensus 189 ---------------~~~~~~~~l~-L~~L~Ls~N~l----------~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~- 241 (313)
T 1ogq_A 189 ---------------KIPPTFANLN-LAFVDLSRNML----------EGDASVLFGSDKNTQKIHLAKNSLAFDLGKVG- 241 (313)
T ss_dssp ---------------ECCGGGGGCC-CSEEECCSSEE----------EECCGGGCCTTSCCSEEECCSSEECCBGGGCC-
T ss_pred ---------------cCChHHhCCc-ccEEECcCCcc----------cCcCCHHHhcCCCCCEEECCCCceeeecCccc-
Confidence 0001122222 56666655544 22344556667777888887776654444443
Q ss_pred CCCCCeeEEEECCCCC-CCCCC-CCCCCCccEEEecCCCCceEeCcccccCCCCCCCCCcceEecccccccc
Q 003899 323 SSFSKLARLELCRCTS-TSLPS-VGQLPFLMELDISGMDGVKSVGSEFYRRSCSVPFPSLETLSFSDMREWE 392 (788)
Q Consensus 323 ~~~~~L~~L~L~~~~~-~~l~~-l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~ 392 (788)
.+++|+.|++++|.+ ..+|. ++.+++|++|++++|...+.++.. + .+++|+.+++.+.+.+.
T Consensus 242 -~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~--~-----~l~~L~~l~l~~N~~lc 305 (313)
T 1ogq_A 242 -LSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG--G-----NLQRFDVSAYANNKCLC 305 (313)
T ss_dssp -CCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS--T-----TGGGSCGGGTCSSSEEE
T ss_pred -ccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC--c-----cccccChHHhcCCCCcc
Confidence 578888888888888 46664 778888888888888655455543 2 27888888888765443
No 46
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.84 E-value=1e-21 Score=202.49 Aligned_cols=101 Identities=21% Similarity=0.326 Sum_probs=48.6
Q ss_pred CeeEEEccCCcCcc---cccccccCCCCCceeeccC-Cccc-ccchhhhccccCcEEEccCccchhhchhhhhcccCCce
Q 003899 119 RLRVFSLHGYSNII---ELPNEIENLKHLRFLNLSR-TSIQ-ILPESINSLYNLNTILLEDCYQLKKLCNDMGNLKKLRH 193 (788)
Q Consensus 119 ~Lr~L~L~~~~~l~---~lp~~~~~l~~L~~L~L~~-~~i~-~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~ 193 (788)
+++.|+|++| .+. .+|..|+++++|++|+|++ |.+. .+|..++++++|++|++++|.....+|..++++++|++
T Consensus 51 ~l~~L~L~~~-~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 51 RVNNLDLSGL-NLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CEEEEEEECC-CCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred eEEEEECCCC-CccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 4555555555 333 3445555555555555552 4444 34555555555555555555222244444555555555
Q ss_pred EecCCCcCcccCCccCcCCCCcceeCc
Q 003899 194 LKSSNVDSLEEMPKGFGKLTCLLTLGT 220 (788)
Q Consensus 194 L~l~~~~~l~~~p~~i~~l~~L~~L~~ 220 (788)
|++++|.....+|..++.+++|++|++
T Consensus 130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L 156 (313)
T 1ogq_A 130 LDFSYNALSGTLPPSISSLPNLVGITF 156 (313)
T ss_dssp EECCSSEEESCCCGGGGGCTTCCEEEC
T ss_pred EeCCCCccCCcCChHHhcCCCCCeEEC
Confidence 555555422244444555555555544
No 47
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.84 E-value=1.5e-20 Score=195.95 Aligned_cols=244 Identities=18% Similarity=0.255 Sum_probs=113.3
Q ss_pred CCeeEEEccCCcCccccc-ccccCCCCCceeeccCCccccc-chhhhccccCcEEEccCccchhhchhhhhcccCCceEe
Q 003899 118 PRLRVFSLHGYSNIIELP-NEIENLKHLRFLNLSRTSIQIL-PESINSLYNLNTILLEDCYQLKKLCNDMGNLKKLRHLK 195 (788)
Q Consensus 118 ~~Lr~L~L~~~~~l~~lp-~~~~~l~~L~~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~ 195 (788)
+.+++|++++| .+..+| ..|+++++|++|+|++|.++.+ |..++.+++|++|++++| .+..+|..+. ++|++|+
T Consensus 52 ~~l~~L~L~~n-~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~l~~~~~--~~L~~L~ 127 (330)
T 1xku_A 52 PDTALLDLQNN-KITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN-QLKELPEKMP--KTLQELR 127 (330)
T ss_dssp TTCCEEECCSS-CCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSS-CCSBCCSSCC--TTCCEEE
T ss_pred CCCeEEECCCC-cCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCC-cCCccChhhc--ccccEEE
Confidence 34555555555 455544 2455555555555555555544 445555555555555555 4445554433 4555555
Q ss_pred cCCCcCcccCCcc-CcCCCCcceeCceEeCCCC-CCCcccccccccCCceeEEeccCCCCCchhhhhcccCCCcCCceEE
Q 003899 196 SSNVDSLEEMPKG-FGKLTCLLTLGTFVVGKDG-GSGLRELKSLTHLQGTLQISKLENVKDVGDACEAQLNSKENLQALL 273 (788)
Q Consensus 196 l~~~~~l~~~p~~-i~~l~~L~~L~~~~~~~~~-~~~~~~l~~L~~L~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~ 273 (788)
+++|. +..++.. ++.+++|++|++..+.... +.....+..+..|+ .+.+....-. ... ..+ .++|+.|+
T Consensus 128 l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~-~L~l~~n~l~-~l~----~~~--~~~L~~L~ 198 (330)
T 1xku_A 128 VHENE-ITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLS-YIRIADTNIT-TIP----QGL--PPSLTELH 198 (330)
T ss_dssp CCSSC-CCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCC-EEECCSSCCC-SCC----SSC--CTTCSEEE
T ss_pred CCCCc-ccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcC-EEECCCCccc-cCC----ccc--cccCCEEE
Confidence 55555 4343332 4555555555544332211 01111112222222 1211110000 000 001 14566666
Q ss_pred EEeecCcccCccchhhhhhhcccCccccccceEEEEeeCCCCCCc-ccCCCCCCCeeEEEECCCCCCCCCC-CCCCCCcc
Q 003899 274 LKWSTRDVQNLDQCEFETHVLSVLKPHQDVQELTITGYGGTKFPI-WLGDSSFSKLARLELCRCTSTSLPS-VGQLPFLM 351 (788)
Q Consensus 274 l~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~-~~~~~~~~~L~~L~L~~~~~~~l~~-l~~l~~L~ 351 (788)
++++.. ....+..+..+++|+.|+++++....++. ++. .+++|+.|++++|.+..+|. +..+++|+
T Consensus 199 l~~n~l----------~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~--~l~~L~~L~L~~N~l~~lp~~l~~l~~L~ 266 (330)
T 1xku_A 199 LDGNKI----------TKVDAASLKGLNNLAKLGLSFNSISAVDNGSLA--NTPHLRELHLNNNKLVKVPGGLADHKYIQ 266 (330)
T ss_dssp CTTSCC----------CEECTGGGTTCTTCCEEECCSSCCCEECTTTGG--GSTTCCEEECCSSCCSSCCTTTTTCSSCC
T ss_pred CCCCcC----------CccCHHHhcCCCCCCEEECCCCcCceeChhhcc--CCCCCCEEECCCCcCccCChhhccCCCcC
Confidence 655443 22223445556666777776666554432 333 46667777777776655543 66666777
Q ss_pred EEEecCCCCceEeCcccccC-CCCCCCCCcceEeccc
Q 003899 352 ELDISGMDGVKSVGSEFYRR-SCSVPFPSLETLSFSD 387 (788)
Q Consensus 352 ~L~l~~~~~~~~~~~~~~~~-~~~~~~~~L~~L~l~~ 387 (788)
+|++++|. +..++...+.. .....++.|+.+++.+
T Consensus 267 ~L~l~~N~-i~~~~~~~f~~~~~~~~~~~l~~l~l~~ 302 (330)
T 1xku_A 267 VVYLHNNN-ISAIGSNDFCPPGYNTKKASYSGVSLFS 302 (330)
T ss_dssp EEECCSSC-CCCCCTTSSSCSSCCTTSCCCSEEECCS
T ss_pred EEECCCCc-CCccChhhcCCcccccccccccceEeec
Confidence 77776664 33343332221 1111134555555554
No 48
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.84 E-value=1.1e-20 Score=197.09 Aligned_cols=102 Identities=21% Similarity=0.345 Sum_probs=64.6
Q ss_pred CCeeEEEccCCcCccccc-ccccCCCCCceeeccCCccccc-chhhhccccCcEEEccCccchhhchhhhhcccCCceEe
Q 003899 118 PRLRVFSLHGYSNIIELP-NEIENLKHLRFLNLSRTSIQIL-PESINSLYNLNTILLEDCYQLKKLCNDMGNLKKLRHLK 195 (788)
Q Consensus 118 ~~Lr~L~L~~~~~l~~lp-~~~~~l~~L~~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~ 195 (788)
++|++|++++| .+..++ ..|.++++|++|+|++|.++.+ |..++.+++|++|++++| .+..+|..+. ++|++|+
T Consensus 54 ~~l~~L~l~~n-~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~--~~L~~L~ 129 (332)
T 2ft3_A 54 PDTTLLDLQNN-DISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKN-HLVEIPPNLP--SSLVELR 129 (332)
T ss_dssp TTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSS-CCCSCCSSCC--TTCCEEE
T ss_pred CCCeEEECCCC-cCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCC-cCCccCcccc--ccCCEEE
Confidence 46666666666 566654 4566666666666666666655 556666666667766666 5666665544 5666666
Q ss_pred cCCCcCcccCCcc-CcCCCCcceeCceEeC
Q 003899 196 SSNVDSLEEMPKG-FGKLTCLLTLGTFVVG 224 (788)
Q Consensus 196 l~~~~~l~~~p~~-i~~l~~L~~L~~~~~~ 224 (788)
+++|. +..+|.. ++.+++|++|++.++.
T Consensus 130 l~~n~-i~~~~~~~~~~l~~L~~L~l~~n~ 158 (332)
T 2ft3_A 130 IHDNR-IRKVPKGVFSGLRNMNCIEMGGNP 158 (332)
T ss_dssp CCSSC-CCCCCSGGGSSCSSCCEEECCSCC
T ss_pred CCCCc-cCccCHhHhCCCccCCEEECCCCc
Confidence 66666 5555544 6666666666665443
No 49
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.82 E-value=5.2e-21 Score=217.14 Aligned_cols=207 Identities=16% Similarity=0.174 Sum_probs=100.9
Q ss_pred HhCCCCCeeEEEccCCcCcc---cccccc------------cCCCCCceeeccCCcccc-cchhhhcc--ccCcEEEccC
Q 003899 113 MLMNLPRLRVFSLHGYSNII---ELPNEI------------ENLKHLRFLNLSRTSIQI-LPESINSL--YNLNTILLED 174 (788)
Q Consensus 113 ~~~~l~~Lr~L~L~~~~~l~---~lp~~~------------~~l~~L~~L~L~~~~i~~-lp~~i~~L--~~L~~L~L~~ 174 (788)
.+..+++|+.|+++++..+. .+|..+ ..+++|++|+|++|.++. .+..+..+ .+|++|++++
T Consensus 68 ~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~ 147 (592)
T 3ogk_B 68 LSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDK 147 (592)
T ss_dssp HHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEES
T ss_pred HHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcC
Confidence 45556667777776642211 122222 256677777777776653 24445553 3377777776
Q ss_pred ccch--hhchhhhhcccCCceEecCCCcCccc-----CCccCcCCCCcceeCceEeCCCCCCCcccccccccCCceeEEe
Q 003899 175 CYQL--KKLCNDMGNLKKLRHLKSSNVDSLEE-----MPKGFGKLTCLLTLGTFVVGKDGGSGLRELKSLTHLQGTLQIS 247 (788)
Q Consensus 175 ~~~l--~~lp~~i~~L~~L~~L~l~~~~~l~~-----~p~~i~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~~~ 247 (788)
|..+ ..++..+..+++|++|++++|. +.. ++.....+++|++|++..+....
T Consensus 148 ~~~~~~~~l~~~~~~~~~L~~L~L~~~~-~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~-------------------- 206 (592)
T 3ogk_B 148 CSGFTTDGLLSIVTHCRKIKTLLMEESS-FSEKDGKWLHELAQHNTSLEVLNFYMTEFAK-------------------- 206 (592)
T ss_dssp CEEEEHHHHHHHHHHCTTCSEEECTTCE-EECCCSHHHHHHHHHCCCCCEEECTTCCCSS--------------------
T ss_pred CCCcCHHHHHHHHhhCCCCCEEECcccc-ccCcchhHHHHHHhcCCCccEEEeeccCCCc--------------------
Confidence 6422 2233333466777777777775 222 12223445566666553322110
Q ss_pred ccCCCCCchhhhhcccCCCcCCceEEEEeecCcccCccchhhhhhhcccCccccccceEEEEeeCCC----CCCcccCCC
Q 003899 248 KLENVKDVGDACEAQLNSKENLQALLLKWSTRDVQNLDQCEFETHVLSVLKPHQDVQELTITGYGGT----KFPIWLGDS 323 (788)
Q Consensus 248 ~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~----~~p~~~~~~ 323 (788)
.........+..+++|+.|++..+.. . ..+..+..+++|+.|.++++... ..+..+ .
T Consensus 207 ------~~~~~l~~~~~~~~~L~~L~L~~~~~----------~-~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l--~ 267 (592)
T 3ogk_B 207 ------ISPKDLETIARNCRSLVSVKVGDFEI----------L-ELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNL--V 267 (592)
T ss_dssp ------CCHHHHHHHHHHCTTCCEEECSSCBG----------G-GGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCC--C
T ss_pred ------cCHHHHHHHHhhCCCCcEEeccCccH----------H-HHHHHHhhhhHHHhhcccccccccchHHHHHHh--h
Confidence 00011111122334555555544332 1 12233444566666666543221 111122 2
Q ss_pred CCCCeeEEEECCCCCCCCCC-CCCCCCccEEEecCCC
Q 003899 324 SFSKLARLELCRCTSTSLPS-VGQLPFLMELDISGMD 359 (788)
Q Consensus 324 ~~~~L~~L~L~~~~~~~l~~-l~~l~~L~~L~l~~~~ 359 (788)
.+++|+.|.++++....+|. +..+++|++|++++|.
T Consensus 268 ~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~ 304 (592)
T 3ogk_B 268 FPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYAL 304 (592)
T ss_dssp CCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCC
T ss_pred ccccccccCccccchhHHHHHHhhcCCCcEEecCCCc
Confidence 45667777776654444444 4556677777777765
No 50
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.81 E-value=5.8e-19 Score=196.90 Aligned_cols=90 Identities=21% Similarity=0.209 Sum_probs=76.4
Q ss_pred CCeeEEEccCCcCcccccccccCCCCCceeeccCCcccccchhhhccccCcEEEccCccchhhchhhhhcccCCceEecC
Q 003899 118 PRLRVFSLHGYSNIIELPNEIENLKHLRFLNLSRTSIQILPESINSLYNLNTILLEDCYQLKKLCNDMGNLKKLRHLKSS 197 (788)
Q Consensus 118 ~~Lr~L~L~~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~ 197 (788)
.++++|++++| .++.+|..+. ++|++|+|++|.|+.+|. .+++|++|+|++| .+..+|. .+++|++|+++
T Consensus 40 ~~l~~L~ls~n-~L~~lp~~l~--~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N-~l~~lp~---~l~~L~~L~Ls 109 (622)
T 3g06_A 40 NGNAVLNVGES-GLTTLPDCLP--AHITTLVIPDNNLTSLPA---LPPELRTLEVSGN-QLTSLPV---LPPGLLELSIF 109 (622)
T ss_dssp HCCCEEECCSS-CCSCCCSCCC--TTCSEEEECSCCCSCCCC---CCTTCCEEEECSC-CCSCCCC---CCTTCCEEEEC
T ss_pred CCCcEEEecCC-CcCccChhhC--CCCcEEEecCCCCCCCCC---cCCCCCEEEcCCC-cCCcCCC---CCCCCCEEECc
Confidence 46899999999 8999998776 799999999999999987 6789999999999 7888887 78999999999
Q ss_pred CCcCcccCCccCcCCCCcceeCce
Q 003899 198 NVDSLEEMPKGFGKLTCLLTLGTF 221 (788)
Q Consensus 198 ~~~~l~~~p~~i~~l~~L~~L~~~ 221 (788)
+|. +..+|. .+++|++|++.
T Consensus 110 ~N~-l~~l~~---~l~~L~~L~L~ 129 (622)
T 3g06_A 110 SNP-LTHLPA---LPSGLCKLWIF 129 (622)
T ss_dssp SCC-CCCCCC---CCTTCCEEECC
T ss_pred CCc-CCCCCC---CCCCcCEEECC
Confidence 998 777776 45666666653
No 51
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.79 E-value=8.3e-21 Score=215.49 Aligned_cols=369 Identities=13% Similarity=0.086 Sum_probs=195.3
Q ss_pred HhCCCCCeeEEEccCCcCcccc-cccccC-C-CCCceeeccCCc-cc--ccchhhhccccCcEEEccCccchhh----ch
Q 003899 113 MLMNLPRLRVFSLHGYSNIIEL-PNEIEN-L-KHLRFLNLSRTS-IQ--ILPESINSLYNLNTILLEDCYQLKK----LC 182 (788)
Q Consensus 113 ~~~~l~~Lr~L~L~~~~~l~~l-p~~~~~-l-~~L~~L~L~~~~-i~--~lp~~i~~L~~L~~L~L~~~~~l~~----lp 182 (788)
.+..+++|++|+|++| .+... +..+.. + .+|++|+|++|. +. .++..+..+++|++|+|++|..... ++
T Consensus 107 l~~~~~~L~~L~L~~~-~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~ 185 (592)
T 3ogk_B 107 ISNNLRQLKSVHFRRM-IVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLH 185 (592)
T ss_dssp HHHHCTTCCEEEEESC-BCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHH
T ss_pred HHhhCCCCCeEEeecc-EecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHH
Confidence 4446677777777776 44432 233433 2 237777776654 22 2333344667777777777631111 33
Q ss_pred hhhhcccCCceEecCCCcCcc-----cCCccCcCCCCcceeCceEeCCCCCCCcccccccccCCceeEEeccCCCCCchh
Q 003899 183 NDMGNLKKLRHLKSSNVDSLE-----EMPKGFGKLTCLLTLGTFVVGKDGGSGLRELKSLTHLQGTLQISKLENVKDVGD 257 (788)
Q Consensus 183 ~~i~~L~~L~~L~l~~~~~l~-----~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~~~~~~~~~~~~~ 257 (788)
.....+++|++|++++|. +. .++..+..+++|++|++..+...+
T Consensus 186 ~~~~~~~~L~~L~L~~n~-~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~------------------------------ 234 (592)
T 3ogk_B 186 ELAQHNTSLEVLNFYMTE-FAKISPKDLETIARNCRSLVSVKVGDFEILE------------------------------ 234 (592)
T ss_dssp HHHHHCCCCCEEECTTCC-CSSCCHHHHHHHHHHCTTCCEEECSSCBGGG------------------------------
T ss_pred HHHhcCCCccEEEeeccC-CCccCHHHHHHHHhhCCCCcEEeccCccHHH------------------------------
Confidence 334566677777777666 32 222334556666666653321100
Q ss_pred hhhcccCCCcCCceEEEEeecCcccCccchhhhhhhcccCccccccceEEEEeeCCCCCCcccCCCCCCCeeEEEECCCC
Q 003899 258 ACEAQLNSKENLQALLLKWSTRDVQNLDQCEFETHVLSVLKPHQDVQELTITGYGGTKFPIWLGDSSFSKLARLELCRCT 337 (788)
Q Consensus 258 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~L~~~~ 337 (788)
....+..+++|+.|.+...... .........+..+++|+.|.+.+.....+|.++. .+++|++|++++|.
T Consensus 235 -l~~~~~~~~~L~~L~l~~~~~~-------~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~--~~~~L~~L~Ls~~~ 304 (592)
T 3ogk_B 235 -LVGFFKAAANLEEFCGGSLNED-------IGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFP--FAAQIRKLDLLYAL 304 (592)
T ss_dssp -GHHHHHHCTTCCEEEECBCCCC-------TTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGG--GGGGCCEEEETTCC
T ss_pred -HHHHHhhhhHHHhhcccccccc-------cchHHHHHHhhccccccccCccccchhHHHHHHh--hcCCCcEEecCCCc
Confidence 0011223345555555421110 0011223445556777777776655555666554 67788888888887
Q ss_pred C--CCCCC-CCCCCCccEEEecCCCCceEeCcccccCCCCCCCCCcceEeccc----------ccccccccccCCCCccc
Q 003899 338 S--TSLPS-VGQLPFLMELDISGMDGVKSVGSEFYRRSCSVPFPSLETLSFSD----------MREWEEWIPCGAGQEVD 404 (788)
Q Consensus 338 ~--~~l~~-l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~----------~~~l~~~~~~~~~~~~~ 404 (788)
+ ..++. +..+++|++|+++++-.-..+ ..+.. .+++|++|++.+ ++.+..... ....
T Consensus 305 l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l-~~~~~-----~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~----~~l~ 374 (592)
T 3ogk_B 305 LETEDHCTLIQKCPNLEVLETRNVIGDRGL-EVLAQ-----YCKQLKRLRIERGADEQGMEDEEGLVSQRGL----IALA 374 (592)
T ss_dssp CCHHHHHHHHTTCTTCCEEEEEGGGHHHHH-HHHHH-----HCTTCCEEEEECCCCSSTTSSTTCCCCHHHH----HHHH
T ss_pred CCHHHHHHHHHhCcCCCEEeccCccCHHHH-HHHHH-----hCCCCCEEEeecCccccccccccCccCHHHH----HHHH
Confidence 5 22222 577888888888743111111 11111 177888888884 444432211 0012
Q ss_pred ccCCcccEEeeecCcccccCC----CCCCCCccEEEEec---cCCccc---------ccCCCCCccEEEeccCCcce---
Q 003899 405 EVFPKLRKLSLFNCHKLQGKL----PKRLLLLETLVIKS---CQQLLV---------TIQCLPALSELQIDGCERVV--- 465 (788)
Q Consensus 405 ~~~~~L~~L~l~~c~~l~~~l----p~~l~~L~~L~l~~---c~~l~~---------~~~~~~~L~~L~l~~~~~~~--- 465 (788)
..+++|++|+++. ..+.+.. ...+++|++|++.+ |+.+.. .+..+++|++|+++.|....
T Consensus 375 ~~~~~L~~L~l~~-~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~ 453 (592)
T 3ogk_B 375 QGCQELEYMAVYV-SDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDL 453 (592)
T ss_dssp HHCTTCSEEEEEE-SCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHH
T ss_pred hhCccCeEEEeec-CCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHH
Confidence 3478888888844 3554322 23467788888874 334432 13447778888876554211
Q ss_pred -ecCC-cCCCCccEEeccccccceeeccccccCCCCccEEEEecCcccchhhhcccccccCCCCCCeEEcccCC
Q 003899 466 -FSSP-IDLSSLKSVHLAYVANEVVLAGLFEQGLPKLENLVIVEVREQAYLWQSETRLLQDIRSLNRLHISRCP 537 (788)
Q Consensus 466 -~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~ 537 (788)
...+ ..+++|+.|++++|..........+..+++|++|++++|....... +..+..+++|++|++++|.
T Consensus 454 ~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~---~~~~~~l~~L~~L~ls~n~ 524 (592)
T 3ogk_B 454 GLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAI---AAAVTKLPSLRYLWVQGYR 524 (592)
T ss_dssp HHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHH---HHHHHHCSSCCEEEEESCB
T ss_pred HHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHH---HHHHHhcCccCeeECcCCc
Confidence 1111 2367777777776653221111223566777777777777432210 3334567777777777775
No 52
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.79 E-value=3.7e-19 Score=187.34 Aligned_cols=198 Identities=17% Similarity=0.140 Sum_probs=131.8
Q ss_pred CCeeEEEccCCcCcccccc-cccCCCCCceeeccCCccccc-chhhhccccCcEEEccCccchhhchhh-hhcccCCceE
Q 003899 118 PRLRVFSLHGYSNIIELPN-EIENLKHLRFLNLSRTSIQIL-PESINSLYNLNTILLEDCYQLKKLCND-MGNLKKLRHL 194 (788)
Q Consensus 118 ~~Lr~L~L~~~~~l~~lp~-~~~~l~~L~~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~~~l~~lp~~-i~~L~~L~~L 194 (788)
++|++|++++| .++.+|. .|.++++|++|++++|.++.+ |..++.+++|++|++++| .+..+|.. ++.+++|++|
T Consensus 52 ~~L~~L~l~~n-~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L 129 (353)
T 2z80_A 52 EAVKSLDLSNN-RITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYN-YLSNLSSSWFKPLSSLTFL 129 (353)
T ss_dssp TTCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCSSCCHHHHTTCTTCSEE
T ss_pred ccCcEEECCCC-cCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCC-cCCcCCHhHhCCCccCCEE
Confidence 47888888888 7888774 688888888888888888877 466888888888888888 77777776 7888888888
Q ss_pred ecCCCcCcccCCc--cCcCCCCcceeCceEeCCCCCCCcccccccccCCceeEEeccCCCCCchhhhhcccCCCcCCceE
Q 003899 195 KSSNVDSLEEMPK--GFGKLTCLLTLGTFVVGKDGGSGLRELKSLTHLQGTLQISKLENVKDVGDACEAQLNSKENLQAL 272 (788)
Q Consensus 195 ~l~~~~~l~~~p~--~i~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L 272 (788)
++++|. +..+|. .++.+++|++|++.++..... .....+.++++|+.|
T Consensus 130 ~L~~n~-l~~l~~~~~~~~l~~L~~L~l~~n~~~~~-----------------------------~~~~~~~~l~~L~~L 179 (353)
T 2z80_A 130 NLLGNP-YKTLGETSLFSHLTKLQILRVGNMDTFTK-----------------------------IQRKDFAGLTFLEEL 179 (353)
T ss_dssp ECTTCC-CSSSCSSCSCTTCTTCCEEEEEESSSCCE-----------------------------ECTTTTTTCCEEEEE
T ss_pred ECCCCC-CcccCchhhhccCCCCcEEECCCCccccc-----------------------------cCHHHccCCCCCCEE
Confidence 888887 777776 477888888888766521000 001124445566677
Q ss_pred EEEeecCcccCccchhhhhhhcccCccccccceEEEEeeCCCCCCcccCCCCCCCeeEEEECCCCCCCCC-----CCCCC
Q 003899 273 LLKWSTRDVQNLDQCEFETHVLSVLKPHQDVQELTITGYGGTKFPIWLGDSSFSKLARLELCRCTSTSLP-----SVGQL 347 (788)
Q Consensus 273 ~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~L~~~~~~~l~-----~l~~l 347 (788)
+++++.. ....+..+..+++|+.|+++++....+|..+. ..+++|+.|++++|.+..++ .....
T Consensus 180 ~l~~n~l----------~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~-~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~ 248 (353)
T 2z80_A 180 EIDASDL----------QSYEPKSLKSIQNVSHLILHMKQHILLLEIFV-DVTSSVECLELRDTDLDTFHFSELSTGETN 248 (353)
T ss_dssp EEEETTC----------CEECTTTTTTCSEEEEEEEECSCSTTHHHHHH-HHTTTEEEEEEESCBCTTCCCC------CC
T ss_pred ECCCCCc----------CccCHHHHhccccCCeecCCCCccccchhhhh-hhcccccEEECCCCcccccccccccccccc
Confidence 7766654 22334556666777777777776655554332 13667777777777663322 12234
Q ss_pred CCccEEEecCC
Q 003899 348 PFLMELDISGM 358 (788)
Q Consensus 348 ~~L~~L~l~~~ 358 (788)
+.++.++++++
T Consensus 249 ~~l~~l~L~~~ 259 (353)
T 2z80_A 249 SLIKKFTFRNV 259 (353)
T ss_dssp CCCCEEEEESC
T ss_pred chhhccccccc
Confidence 45555555554
No 53
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.78 E-value=8.4e-18 Score=187.55 Aligned_cols=256 Identities=22% Similarity=0.205 Sum_probs=158.4
Q ss_pred CCCceeeccCCcccccchhhhccccCcEEEccCccchhhchhhhhcccCCceEecCCCcCcccCCccCcCCCCcceeCce
Q 003899 142 KHLRFLNLSRTSIQILPESINSLYNLNTILLEDCYQLKKLCNDMGNLKKLRHLKSSNVDSLEEMPKGFGKLTCLLTLGTF 221 (788)
Q Consensus 142 ~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~i~~l~~L~~L~~~ 221 (788)
.++++|++++|.++.+|..+. ++|++|++++| .+..+|. .+++|++|++++|. +..+|. .+++|++|++.
T Consensus 40 ~~l~~L~ls~n~L~~lp~~l~--~~L~~L~L~~N-~l~~lp~---~l~~L~~L~Ls~N~-l~~lp~---~l~~L~~L~Ls 109 (622)
T 3g06_A 40 NGNAVLNVGESGLTTLPDCLP--AHITTLVIPDN-NLTSLPA---LPPELRTLEVSGNQ-LTSLPV---LPPGLLELSIF 109 (622)
T ss_dssp HCCCEEECCSSCCSCCCSCCC--TTCSEEEECSC-CCSCCCC---CCTTCCEEEECSCC-CSCCCC---CCTTCCEEEEC
T ss_pred CCCcEEEecCCCcCccChhhC--CCCcEEEecCC-CCCCCCC---cCCCCCEEEcCCCc-CCcCCC---CCCCCCEEECc
Confidence 468999999999999998776 79999999999 7888887 67899999999998 777776 55667776653
Q ss_pred EeCCCCCCCcccccccccCCceeEEeccCCCCCchhhhhcccCCCcCCceEEEEeecCcccCccchhhhhhhcccCcccc
Q 003899 222 VVGKDGGSGLRELKSLTHLQGTLQISKLENVKDVGDACEAQLNSKENLQALLLKWSTRDVQNLDQCEFETHVLSVLKPHQ 301 (788)
Q Consensus 222 ~~~~~~~~~~~~l~~L~~L~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~~~ 301 (788)
++.... + +. .++
T Consensus 110 ~N~l~~------------l-----------------------------------------------------~~---~l~ 121 (622)
T 3g06_A 110 SNPLTH------------L-----------------------------------------------------PA---LPS 121 (622)
T ss_dssp SCCCCC------------C-----------------------------------------------------CC---CCT
T ss_pred CCcCCC------------C-----------------------------------------------------CC---CCC
Confidence 332100 0 00 234
Q ss_pred ccceEEEEeeCCCCCCcccCCCCCCCeeEEEECCCCCCCCCCCCCCCCccEEEecCCCCceEeCcccccCCCCCCCCCcc
Q 003899 302 DVQELTITGYGGTKFPIWLGDSSFSKLARLELCRCTSTSLPSVGQLPFLMELDISGMDGVKSVGSEFYRRSCSVPFPSLE 381 (788)
Q Consensus 302 ~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~L~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~ 381 (788)
+|+.|++++|....+|. .+++|+.|++++|.+..+|. .+++|+.|++++|. +..++ . .+++|+
T Consensus 122 ~L~~L~L~~N~l~~lp~-----~l~~L~~L~Ls~N~l~~l~~--~~~~L~~L~L~~N~-l~~l~----~-----~~~~L~ 184 (622)
T 3g06_A 122 GLCKLWIFGNQLTSLPV-----LPPGLQELSVSDNQLASLPA--LPSELCKLWAYNNQ-LTSLP----M-----LPSGLQ 184 (622)
T ss_dssp TCCEEECCSSCCSCCCC-----CCTTCCEEECCSSCCSCCCC--CCTTCCEEECCSSC-CSCCC----C-----CCTTCC
T ss_pred CcCEEECCCCCCCcCCC-----CCCCCCEEECcCCcCCCcCC--ccCCCCEEECCCCC-CCCCc----c-----cCCCCc
Confidence 56666666666666664 24678888888887765554 34677888887774 33333 1 156677
Q ss_pred eEecccccccccccccCCCCcccccCCcccEEeeecCcccccCCCCCCCCccEEEEeccCCcccccCCCCCccEEEeccC
Q 003899 382 TLSFSDMREWEEWIPCGAGQEVDEVFPKLRKLSLFNCHKLQGKLPKRLLLLETLVIKSCQQLLVTIQCLPALSELQIDGC 461 (788)
Q Consensus 382 ~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~lp~~l~~L~~L~l~~c~~l~~~~~~~~~L~~L~l~~~ 461 (788)
.|+++++ .+..++. .+++|+.|++++| .+. .+|..+++|+.|++++|
T Consensus 185 ~L~Ls~N-~l~~l~~---------~~~~L~~L~L~~N-~l~-~l~~~~~~L~~L~Ls~N--------------------- 231 (622)
T 3g06_A 185 ELSVSDN-QLASLPT---------LPSELYKLWAYNN-RLT-SLPALPSGLKELIVSGN--------------------- 231 (622)
T ss_dssp EEECCSS-CCSCCCC---------CCTTCCEEECCSS-CCS-SCCCCCTTCCEEECCSS---------------------
T ss_pred EEECCCC-CCCCCCC---------ccchhhEEECcCC-ccc-ccCCCCCCCCEEEccCC---------------------
Confidence 7777663 3333322 2466777777666 555 55555555555555554
Q ss_pred CcceecCCcCCCCccEEeccccccceeeccccccCCCCccEEEEecCcccchhhhcccccccCCCCCCeEEcccCC
Q 003899 462 ERVVFSSPIDLSSLKSVHLAYVANEVVLAGLFEQGLPKLENLVIVEVREQAYLWQSETRLLQDIRSLNRLHISRCP 537 (788)
Q Consensus 462 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~ 537 (788)
....++ ..+++|+.|++++| .++.+|. .+++|+.|++++|... .+ |..+..+++|+.|++++|+
T Consensus 232 ~L~~lp--~~l~~L~~L~Ls~N-~L~~lp~----~~~~L~~L~Ls~N~L~-~l----p~~l~~l~~L~~L~L~~N~ 295 (622)
T 3g06_A 232 RLTSLP--VLPSELKELMVSGN-RLTSLPM----LPSGLLSLSVYRNQLT-RL----PESLIHLSSETTVNLEGNP 295 (622)
T ss_dssp CCSCCC--CCCTTCCEEECCSS-CCSCCCC----CCTTCCEEECCSSCCC-SC----CGGGGGSCTTCEEECCSCC
T ss_pred ccCcCC--CCCCcCcEEECCCC-CCCcCCc----ccccCcEEeCCCCCCC-cC----CHHHhhccccCEEEecCCC
Confidence 322211 23345555555554 2333333 3455666666666544 23 4555566666666666654
No 54
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.78 E-value=6.8e-19 Score=185.30 Aligned_cols=200 Identities=18% Similarity=0.180 Sum_probs=147.0
Q ss_pred hCCCCCeeEEEccCCcCcccccccccCCCCCceeeccCCcccccch-hhhccccCcEEEccCccchhhch-hhhhcccCC
Q 003899 114 LMNLPRLRVFSLHGYSNIIELPNEIENLKHLRFLNLSRTSIQILPE-SINSLYNLNTILLEDCYQLKKLC-NDMGNLKKL 191 (788)
Q Consensus 114 ~~~l~~Lr~L~L~~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~~lp-~~i~~L~~L 191 (788)
...++...+.+++++ .++.+|..+. .+|++|++++|.++.+|. .+.++++|++|++++| .+..++ ..++++++|
T Consensus 27 ~~~C~~~~~c~~~~~-~l~~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L 102 (353)
T 2z80_A 27 SLSCDRNGICKGSSG-SLNSIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSN-GINTIEEDSFSSLGSL 102 (353)
T ss_dssp CCEECTTSEEECCST-TCSSCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTS-CCCEECTTTTTTCTTC
T ss_pred CCCCCCCeEeeCCCC-Cccccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCC-ccCccCHhhcCCCCCC
Confidence 445566677899998 9999998765 489999999999999875 8999999999999999 677664 459999999
Q ss_pred ceEecCCCcCcccCCcc-CcCCCCcceeCceEeCCCCCCCcccccccccCCceeEEeccCCCCCchhhhhcccCCCcCCc
Q 003899 192 RHLKSSNVDSLEEMPKG-FGKLTCLLTLGTFVVGKDGGSGLRELKSLTHLQGTLQISKLENVKDVGDACEAQLNSKENLQ 270 (788)
Q Consensus 192 ~~L~l~~~~~l~~~p~~-i~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~ 270 (788)
++|++++|. +..+|.. ++.+++|++|++.++.... ++. ...+..+++|+
T Consensus 103 ~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~------l~~-----------------------~~~~~~l~~L~ 152 (353)
T 2z80_A 103 EHLDLSYNY-LSNLSSSWFKPLSSLTFLNLLGNPYKT------LGE-----------------------TSLFSHLTKLQ 152 (353)
T ss_dssp CEEECCSSC-CSSCCHHHHTTCTTCSEEECTTCCCSS------SCS-----------------------SCSCTTCTTCC
T ss_pred CEEECCCCc-CCcCCHhHhCCCccCCEEECCCCCCcc------cCc-----------------------hhhhccCCCCc
Confidence 999999999 8888877 8999999999885543211 000 01244567788
Q ss_pred eEEEEeec-CcccCccchhhhhhhcccCccccccceEEEEeeCCCCC-CcccCCCCCCCeeEEEECCCCCCCCCC--CCC
Q 003899 271 ALLLKWST-RDVQNLDQCEFETHVLSVLKPHQDVQELTITGYGGTKF-PIWLGDSSFSKLARLELCRCTSTSLPS--VGQ 346 (788)
Q Consensus 271 ~L~l~~~~-~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-p~~~~~~~~~~L~~L~L~~~~~~~l~~--l~~ 346 (788)
.|+++.+. . .......+..+++|+.|+++++..... |.++. .+++|+.|++++|.+..+|. +..
T Consensus 153 ~L~l~~n~~~----------~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~l~~L~~L~l~~n~l~~~~~~~~~~ 220 (353)
T 2z80_A 153 ILRVGNMDTF----------TKIQRKDFAGLTFLEELEIDASDLQSYEPKSLK--SIQNVSHLILHMKQHILLLEIFVDV 220 (353)
T ss_dssp EEEEEESSSC----------CEECTTTTTTCCEEEEEEEEETTCCEECTTTTT--TCSEEEEEEEECSCSTTHHHHHHHH
T ss_pred EEECCCCccc----------cccCHHHccCCCCCCEEECCCCCcCccCHHHHh--ccccCCeecCCCCccccchhhhhhh
Confidence 88887763 2 122234566677788888887766554 55554 57778888887777655443 344
Q ss_pred CCCccEEEecCCC
Q 003899 347 LPFLMELDISGMD 359 (788)
Q Consensus 347 l~~L~~L~l~~~~ 359 (788)
+++|++|++++|.
T Consensus 221 ~~~L~~L~L~~n~ 233 (353)
T 2z80_A 221 TSSVECLELRDTD 233 (353)
T ss_dssp TTTEEEEEEESCB
T ss_pred cccccEEECCCCc
Confidence 6777777777774
No 55
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.78 E-value=8.4e-20 Score=188.82 Aligned_cols=251 Identities=13% Similarity=0.088 Sum_probs=174.7
Q ss_pred HHHhCCCCCeeEEEccCCcCccccc-ccccCCCCCceeeccCCcccccchhhhccccCcEEEccCccchhhchhhhhccc
Q 003899 111 LQMLMNLPRLRVFSLHGYSNIIELP-NEIENLKHLRFLNLSRTSIQILPESINSLYNLNTILLEDCYQLKKLCNDMGNLK 189 (788)
Q Consensus 111 ~~~~~~l~~Lr~L~L~~~~~l~~lp-~~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~ 189 (788)
...+..+++|++|++++| .+..++ ..|.++++|++|+|++|.+..+++ +..+++|++|++++| .+..+|. .+
T Consensus 27 ~~~~~~~~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n-~l~~l~~----~~ 99 (317)
T 3o53_A 27 ASLRQSAWNVKELDLSGN-PLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNN-YVQELLV----GP 99 (317)
T ss_dssp HHHHTTGGGCSEEECTTS-CCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSS-EEEEEEE----CT
T ss_pred HHHhccCCCCCEEECcCC-ccCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCC-ccccccC----CC
Confidence 347888889999999999 888876 678999999999999999987765 899999999999999 7776663 48
Q ss_pred CCceEecCCCcCcccCCccCcCCCCcceeCceEeCCCCCCCcccccccccCCceeEEeccCCCCCchhhhhcccCCCcCC
Q 003899 190 KLRHLKSSNVDSLEEMPKGFGKLTCLLTLGTFVVGKDGGSGLRELKSLTHLQGTLQISKLENVKDVGDACEAQLNSKENL 269 (788)
Q Consensus 190 ~L~~L~l~~~~~l~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~~~~~~~~~~~~~~~~~~l~~~~~L 269 (788)
+|++|++++|. +..++.. .+++|++|++.++..... ....+..+++|
T Consensus 100 ~L~~L~l~~n~-l~~~~~~--~~~~L~~L~l~~N~l~~~------------------------------~~~~~~~l~~L 146 (317)
T 3o53_A 100 SIETLHAANNN-ISRVSCS--RGQGKKNIYLANNKITML------------------------------RDLDEGCRSRV 146 (317)
T ss_dssp TCCEEECCSSC-CSEEEEC--CCSSCEEEECCSSCCCSG------------------------------GGBCTGGGSSE
T ss_pred CcCEEECCCCc-cCCcCcc--ccCCCCEEECCCCCCCCc------------------------------cchhhhccCCC
Confidence 99999999998 6666543 367788888755433210 01113334566
Q ss_pred ceEEEEeecCcccCccchhhhhhhcccC-ccccccceEEEEeeCCCCCCcccCCCCCCCeeEEEECCCCCCCCC-CCCCC
Q 003899 270 QALLLKWSTRDVQNLDQCEFETHVLSVL-KPHQDVQELTITGYGGTKFPIWLGDSSFSKLARLELCRCTSTSLP-SVGQL 347 (788)
Q Consensus 270 ~~L~l~~~~~~~~~~~~~~~~~~~~~~l-~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~L~~~~~~~l~-~l~~l 347 (788)
+.|+++++.. ....+..+ ..+++|+.|++++|....+|... .+++|+.|++++|.+..+| .+..+
T Consensus 147 ~~L~Ls~N~l----------~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~---~l~~L~~L~Ls~N~l~~l~~~~~~l 213 (317)
T 3o53_A 147 QYLDLKLNEI----------DTVNFAELAASSDTLEHLNLQYNFIYDVKGQV---VFAKLKTLDLSSNKLAFMGPEFQSA 213 (317)
T ss_dssp EEEECTTSCC----------CEEEGGGGGGGTTTCCEEECTTSCCCEEECCC---CCTTCCEEECCSSCCCEECGGGGGG
T ss_pred CEEECCCCCC----------CcccHHHHhhccCcCCEEECCCCcCccccccc---ccccCCEEECCCCcCCcchhhhccc
Confidence 6676666554 11222233 24577888888888777665444 4788888888888885554 37778
Q ss_pred CCccEEEecCCCCceEeCcccccCCCCCCCCCcceEeccccccc-ccccccCCCCcccccCCcccEEeeecCcccccCCC
Q 003899 348 PFLMELDISGMDGVKSVGSEFYRRSCSVPFPSLETLSFSDMREW-EEWIPCGAGQEVDEVFPKLRKLSLFNCHKLQGKLP 426 (788)
Q Consensus 348 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l-~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~lp 426 (788)
++|++|++++|. +..++..+. .+++|+.|++++++-. ...+. ....+++|+.|++.+++.+.|..|
T Consensus 214 ~~L~~L~L~~N~-l~~l~~~~~------~l~~L~~L~l~~N~~~~~~~~~------~~~~~~~L~~l~l~~~~~l~~~~~ 280 (317)
T 3o53_A 214 AGVTWISLRNNK-LVLIEKALR------FSQNLEHFDLRGNGFHCGTLRD------FFSKNQRVQTVAKQTVKKLTGQNE 280 (317)
T ss_dssp TTCSEEECTTSC-CCEECTTCC------CCTTCCEEECTTCCCBHHHHHH------HHHTCHHHHHHHHHHHHHHHSSSS
T ss_pred CcccEEECcCCc-ccchhhHhh------cCCCCCEEEccCCCccCcCHHH------HHhccccceEEECCCchhccCCch
Confidence 888888888874 445655432 2788888888875432 12222 345678888888887777776555
Q ss_pred C
Q 003899 427 K 427 (788)
Q Consensus 427 ~ 427 (788)
.
T Consensus 281 ~ 281 (317)
T 3o53_A 281 E 281 (317)
T ss_dssp C
T ss_pred h
Confidence 4
No 56
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.78 E-value=6e-19 Score=181.77 Aligned_cols=101 Identities=21% Similarity=0.262 Sum_probs=74.1
Q ss_pred CCeeEEEccCCcCccccccc-ccCCCCCceeeccCCccccc---chhhhccccCcEEEccCccchhhchhhhhcccCCce
Q 003899 118 PRLRVFSLHGYSNIIELPNE-IENLKHLRFLNLSRTSIQIL---PESINSLYNLNTILLEDCYQLKKLCNDMGNLKKLRH 193 (788)
Q Consensus 118 ~~Lr~L~L~~~~~l~~lp~~-~~~l~~L~~L~L~~~~i~~l---p~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~ 193 (788)
++|++|++++| .+..+|.. |.++++|++|+|++|.+..+ |..+..+++|++|++++| .+..+|..+..+++|++
T Consensus 28 ~~l~~L~L~~n-~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n-~i~~l~~~~~~l~~L~~ 105 (306)
T 2z66_A 28 SSATRLELESN-KLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFN-GVITMSSNFLGLEQLEH 105 (306)
T ss_dssp TTCCEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSC-SEEEEEEEEETCTTCCE
T ss_pred CCCCEEECCCC-ccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCC-ccccChhhcCCCCCCCE
Confidence 57788888887 77777743 67788888888888877654 566777788888888887 66777777777888888
Q ss_pred EecCCCcCcccCCc--cCcCCCCcceeCce
Q 003899 194 LKSSNVDSLEEMPK--GFGKLTCLLTLGTF 221 (788)
Q Consensus 194 L~l~~~~~l~~~p~--~i~~l~~L~~L~~~ 221 (788)
|++++|. +..++. .+..+++|++|++.
T Consensus 106 L~l~~n~-l~~~~~~~~~~~l~~L~~L~l~ 134 (306)
T 2z66_A 106 LDFQHSN-LKQMSEFSVFLSLRNLIYLDIS 134 (306)
T ss_dssp EECTTSE-EESSTTTTTTTTCTTCCEEECT
T ss_pred EECCCCc-ccccccchhhhhccCCCEEECC
Confidence 8888877 666654 46677777777653
No 57
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.77 E-value=3.9e-21 Score=211.00 Aligned_cols=105 Identities=17% Similarity=0.213 Sum_probs=70.8
Q ss_pred CceeEEEeccCCccccchhhhh-HHHHhCCCCCeeEEEccCCcCcc-----cccccccCCCCCceeeccCCccccc-chh
Q 003899 88 EHLRTFLPVNLSNYRINYLAWS-VLQMLMNLPRLRVFSLHGYSNII-----ELPNEIENLKHLRFLNLSRTSIQIL-PES 160 (788)
Q Consensus 88 ~~Lr~L~~~~~~~~~~~~~~~~-~~~~~~~l~~Lr~L~L~~~~~l~-----~lp~~~~~l~~L~~L~L~~~~i~~l-p~~ 160 (788)
++++.|.+.++. +... ....+..+++|++|++++| .+. .++..+..+++|++|+|++|.+... +..
T Consensus 3 ~~l~~L~Ls~~~------l~~~~~~~~~~~~~~L~~L~L~~~-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~ 75 (461)
T 1z7x_W 3 LDIQSLDIQCEE------LSDARWAELLPLLQQCQVVRLDDC-GLTEARCKDISSALRVNPALAELNLRSNELGDVGVHC 75 (461)
T ss_dssp EEEEEEEEESCC------CCHHHHHHHHHHHTTCSEEEEESS-CCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHH
T ss_pred ccceehhhhhcc------cCchhHHHHHhhcCCccEEEccCC-CCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHH
Confidence 456777776543 2222 2225777788888888888 665 4456677778888888888877643 333
Q ss_pred hh-ccc----cCcEEEccCccchh-----hchhhhhcccCCceEecCCCc
Q 003899 161 IN-SLY----NLNTILLEDCYQLK-----KLCNDMGNLKKLRHLKSSNVD 200 (788)
Q Consensus 161 i~-~L~----~L~~L~L~~~~~l~-----~lp~~i~~L~~L~~L~l~~~~ 200 (788)
+. .+. +|++|++++| .+. .+|..+..+++|++|++++|.
T Consensus 76 l~~~l~~~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~ 124 (461)
T 1z7x_W 76 VLQGLQTPSCKIQKLSLQNC-CLTGAGCGVLSSTLRTLPTLQELHLSDNL 124 (461)
T ss_dssp HHHTTCSTTCCCCEEECTTS-CCBGGGHHHHHHHTTSCTTCCEEECCSSB
T ss_pred HHHHHhhCCCceeEEEccCC-CCCHHHHHHHHHHHccCCceeEEECCCCc
Confidence 43 355 5888888887 444 567777888888888888877
No 58
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.77 E-value=9.3e-19 Score=180.36 Aligned_cols=124 Identities=18% Similarity=0.174 Sum_probs=85.6
Q ss_pred CceeEEEeccCCccccchhhhhHHH-HhCCCCCeeEEEccCCcCcccc---cccccCCCCCceeeccCCcccccchhhhc
Q 003899 88 EHLRTFLPVNLSNYRINYLAWSVLQ-MLMNLPRLRVFSLHGYSNIIEL---PNEIENLKHLRFLNLSRTSIQILPESINS 163 (788)
Q Consensus 88 ~~Lr~L~~~~~~~~~~~~~~~~~~~-~~~~l~~Lr~L~L~~~~~l~~l---p~~~~~l~~L~~L~L~~~~i~~lp~~i~~ 163 (788)
++++.|.+.++. + ..+|. .|.++++|++|++++| .+..+ |..+..+++|++|+|++|.+..+|..+..
T Consensus 28 ~~l~~L~L~~n~------l-~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~~~~ 99 (306)
T 2z66_A 28 SSATRLELESNK------L-QSLPHGVFDKLTQLTKLSLSSN-GLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLG 99 (306)
T ss_dssp TTCCEEECCSSC------C-CCCCTTTTTTCTTCSEEECCSS-CCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEEEEET
T ss_pred CCCCEEECCCCc------c-CccCHhHhhccccCCEEECCCC-ccCcccCcccccccccccCEEECCCCccccChhhcCC
Confidence 567777776653 2 24444 5777888888888877 66554 45566777888888888887777777777
Q ss_pred cccCcEEEccCccchhhchh--hhhcccCCceEecCCCcCcccCCccCcCCCCcceeCc
Q 003899 164 LYNLNTILLEDCYQLKKLCN--DMGNLKKLRHLKSSNVDSLEEMPKGFGKLTCLLTLGT 220 (788)
Q Consensus 164 L~~L~~L~L~~~~~l~~lp~--~i~~L~~L~~L~l~~~~~l~~~p~~i~~l~~L~~L~~ 220 (788)
+++|++|++++| .+..+|. .+..+++|++|++++|......|..++.+++|++|++
T Consensus 100 l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 157 (306)
T 2z66_A 100 LEQLEHLDFQHS-NLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKM 157 (306)
T ss_dssp CTTCCEEECTTS-EEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEEC
T ss_pred CCCCCEEECCCC-cccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEEC
Confidence 888888888877 6666654 5777788888888877733333444666677776665
No 59
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.77 E-value=8.3e-21 Score=215.64 Aligned_cols=225 Identities=16% Similarity=0.126 Sum_probs=102.8
Q ss_pred cCccccccceE-EEEeeCCCCCCcccCCCCCCCeeEEEECCCCCC--CCCC-CCCCCCccEEEecCCCCceEe-Cccccc
Q 003899 296 VLKPHQDVQEL-TITGYGGTKFPIWLGDSSFSKLARLELCRCTST--SLPS-VGQLPFLMELDISGMDGVKSV-GSEFYR 370 (788)
Q Consensus 296 ~l~~~~~L~~L-~l~~~~~~~~p~~~~~~~~~~L~~L~L~~~~~~--~l~~-l~~l~~L~~L~l~~~~~~~~~-~~~~~~ 370 (788)
.+..+++|+.+ .+.+.....+|..+. .+++|+.|++++|.+. .++. +..+++|++|++++| +... ...+..
T Consensus 260 ~l~~~~~L~~Ls~~~~~~~~~l~~~~~--~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~--~~~~~l~~l~~ 335 (594)
T 2p1m_B 260 ALSGCKELRCLSGFWDAVPAYLPAVYS--VCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY--IEDAGLEVLAS 335 (594)
T ss_dssp HHHTCTTCCEEECCBTCCGGGGGGGHH--HHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG--GHHHHHHHHHH
T ss_pred HHhcCCCcccccCCcccchhhHHHHHH--hhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc--cCHHHHHHHHH
Confidence 45566677766 222222222333222 4677788888777651 1222 456777888887776 2110 011111
Q ss_pred CCCCCCCCCcceEecccc--------cccccccccCCCCcccccCCcccEEeeecCcccccCC----CCCCCCccEEEEe
Q 003899 371 RSCSVPFPSLETLSFSDM--------REWEEWIPCGAGQEVDEVFPKLRKLSLFNCHKLQGKL----PKRLLLLETLVIK 438 (788)
Q Consensus 371 ~~~~~~~~~L~~L~l~~~--------~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~l----p~~l~~L~~L~l~ 438 (788)
.+++|++|++.++ ..+..... ......+++|++|.+..+ .+.+.. ...+++|+.|++.
T Consensus 336 -----~~~~L~~L~L~~~~~~g~~~~~~l~~~~l----~~l~~~~~~L~~L~~~~~-~l~~~~~~~l~~~~~~L~~L~L~ 405 (594)
T 2p1m_B 336 -----TCKDLRELRVFPSEPFVMEPNVALTEQGL----VSVSMGCPKLESVLYFCR-QMTNAALITIARNRPNMTRFRLC 405 (594)
T ss_dssp -----HCTTCCEEEEECSCTTCSSCSSCCCHHHH----HHHHHHCTTCCEEEEEES-CCCHHHHHHHHHHCTTCCEEEEE
T ss_pred -----hCCCCCEEEEecCcccccccCCCCCHHHH----HHHHHhchhHHHHHHhcC-CcCHHHHHHHHhhCCCcceeEee
Confidence 1677777777432 12211100 001123677777754433 443211 1235667777776
Q ss_pred -----ccCCccc---------ccCCCCCccEEEeccCCcc-eecCCc-CCCCccEEeccccccceeeccccccCCCCccE
Q 003899 439 -----SCQQLLV---------TIQCLPALSELQIDGCERV-VFSSPI-DLSSLKSVHLAYVANEVVLAGLFEQGLPKLEN 502 (788)
Q Consensus 439 -----~c~~l~~---------~~~~~~~L~~L~l~~~~~~-~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~ 502 (788)
+|..+.. .+..+++|++|+++++-.. ....+. .+++|+.|++++|.............+++|++
T Consensus 406 ~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~ 485 (594)
T 2p1m_B 406 IIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSGLLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRK 485 (594)
T ss_dssp ESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCE
T ss_pred cccCCCcccccCCchhhHHHHHHhhCCCccEEeecCcccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCE
Confidence 3444431 1334566666666542110 011111 25556666665554211111111234556666
Q ss_pred EEEecCcccchhhhcccccccCCCCCCeEEcccCC
Q 003899 503 LVIVEVREQAYLWQSETRLLQDIRSLNRLHISRCP 537 (788)
Q Consensus 503 L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~ 537 (788)
|++++|....... ......+++|++|++++|+
T Consensus 486 L~L~~n~~~~~~~---~~~~~~l~~L~~L~l~~~~ 517 (594)
T 2p1m_B 486 LEIRDCPFGDKAL---LANASKLETMRSLWMSSCS 517 (594)
T ss_dssp EEEESCSCCHHHH---HHTGGGGGGSSEEEEESSC
T ss_pred EECcCCCCcHHHH---HHHHHhCCCCCEEeeeCCC
Confidence 6666665522210 1223345566666666654
No 60
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.77 E-value=9.2e-18 Score=182.21 Aligned_cols=99 Identities=33% Similarity=0.497 Sum_probs=49.2
Q ss_pred CCeeEEEccCCcCccccc-ccccCCCCCceeeccCCcccccc-hhhhccccCcEEEccCccchhhchhh-hhcccCCceE
Q 003899 118 PRLRVFSLHGYSNIIELP-NEIENLKHLRFLNLSRTSIQILP-ESINSLYNLNTILLEDCYQLKKLCND-MGNLKKLRHL 194 (788)
Q Consensus 118 ~~Lr~L~L~~~~~l~~lp-~~~~~l~~L~~L~L~~~~i~~lp-~~i~~L~~L~~L~L~~~~~l~~lp~~-i~~L~~L~~L 194 (788)
+++++|+|++| .+..++ ..|.++++|++|+|++|.|..++ ..|..+++|++|+|++| .+..+|.. +..+++|++|
T Consensus 64 ~~l~~L~L~~n-~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L 141 (440)
T 3zyj_A 64 TNTRLLNLHEN-QIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDN-RLTTIPNGAFVYLSKLKEL 141 (440)
T ss_dssp TTCSEEECCSC-CCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSS-CCSSCCTTTSCSCSSCCEE
T ss_pred CCCcEEEccCC-cCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCC-cCCeeCHhHhhccccCcee
Confidence 34555555555 454443 44555555555555555555442 44555555555555555 44444442 4555555555
Q ss_pred ecCCCcCcccCCc-cCcCCCCcceeC
Q 003899 195 KSSNVDSLEEMPK-GFGKLTCLLTLG 219 (788)
Q Consensus 195 ~l~~~~~l~~~p~-~i~~l~~L~~L~ 219 (788)
++++|. +..+|. .+..+++|++|+
T Consensus 142 ~L~~N~-i~~~~~~~~~~l~~L~~L~ 166 (440)
T 3zyj_A 142 WLRNNP-IESIPSYAFNRIPSLRRLD 166 (440)
T ss_dssp ECCSCC-CCEECTTTTTTCTTCCEEE
T ss_pred eCCCCc-ccccCHHHhhhCcccCEeC
Confidence 555555 444333 244444444443
No 61
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.77 E-value=1.1e-17 Score=182.44 Aligned_cols=108 Identities=22% Similarity=0.241 Sum_probs=61.4
Q ss_pred CCCCeeEEEECCCCCCCCCCCCCCCCccEEEecCCCCceEeCcccccCCCCCCCCCcceEecccccccccccccCCCCcc
Q 003899 324 SFSKLARLELCRCTSTSLPSVGQLPFLMELDISGMDGVKSVGSEFYRRSCSVPFPSLETLSFSDMREWEEWIPCGAGQEV 403 (788)
Q Consensus 324 ~~~~L~~L~L~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~ 403 (788)
.+++|+.|++++|.+..+|.+..+++|++|++++|... .+....+.. +++|+.|++.++ .+..+.. ..
T Consensus 194 ~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~-----l~~L~~L~L~~n-~l~~~~~-----~~ 261 (452)
T 3zyi_A 194 GLFNLKYLNLGMCNIKDMPNLTPLVGLEELEMSGNHFP-EIRPGSFHG-----LSSLKKLWVMNS-QVSLIER-----NA 261 (452)
T ss_dssp TCTTCCEEECTTSCCSSCCCCTTCTTCCEEECTTSCCS-EECGGGGTT-----CTTCCEEECTTS-CCCEECT-----TT
T ss_pred CCCCCCEEECCCCcccccccccccccccEEECcCCcCc-ccCcccccC-----ccCCCEEEeCCC-cCceECH-----HH
Confidence 45666677777776666666777777777777777433 333222222 666666666653 3333221 03
Q ss_pred cccCCcccEEeeecCcccccCCCCCCCCccEEEEeccCCcccccCCCCCccEEEeccCC
Q 003899 404 DEVFPKLRKLSLFNCHKLQGKLPKRLLLLETLVIKSCQQLLVTIQCLPALSELQIDGCE 462 (788)
Q Consensus 404 ~~~~~~L~~L~l~~c~~l~~~lp~~l~~L~~L~l~~c~~l~~~~~~~~~L~~L~l~~~~ 462 (788)
...+++|+.|++++| .+. .+|. ..+..+++|++|++++|+
T Consensus 262 ~~~l~~L~~L~L~~N-~l~-~~~~-----------------~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 262 FDGLASLVELNLAHN-NLS-SLPH-----------------DLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp TTTCTTCCEEECCSS-CCS-CCCT-----------------TSSTTCTTCCEEECCSSC
T ss_pred hcCCCCCCEEECCCC-cCC-ccCh-----------------HHhccccCCCEEEccCCC
Confidence 345677777777776 555 3442 233445566666666655
No 62
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.76 E-value=2.7e-18 Score=187.16 Aligned_cols=218 Identities=24% Similarity=0.317 Sum_probs=104.7
Q ss_pred CeeEEEccCCcCcccc-cccccCCCCCceeeccCCcccccc-hhhhccccCcEEEccCccchhhchhh-hhcccCCceEe
Q 003899 119 RLRVFSLHGYSNIIEL-PNEIENLKHLRFLNLSRTSIQILP-ESINSLYNLNTILLEDCYQLKKLCND-MGNLKKLRHLK 195 (788)
Q Consensus 119 ~Lr~L~L~~~~~l~~l-p~~~~~l~~L~~L~L~~~~i~~lp-~~i~~L~~L~~L~L~~~~~l~~lp~~-i~~L~~L~~L~ 195 (788)
++++|+|++| .+..+ |..|.++++|++|+|++|.|..++ ..+..+++|++|+|++| .+..+|.. +..+++|++|+
T Consensus 76 ~l~~L~L~~n-~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~ 153 (452)
T 3zyi_A 76 NTRYLNLMEN-NIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDN-WLTVIPSGAFEYLSKLRELW 153 (452)
T ss_dssp TCSEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCSBCCTTTSSSCTTCCEEE
T ss_pred CccEEECcCC-cCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCC-cCCccChhhhcccCCCCEEE
Confidence 4555555555 44444 244455555555555555555442 44455555555555555 44444433 44455555555
Q ss_pred cCCCcCcccCCc-cCcCCCCcceeCceEeCCCCCCCcccccccccCCceeEEeccCCCCCchhhhhcccCCCcCCceEEE
Q 003899 196 SSNVDSLEEMPK-GFGKLTCLLTLGTFVVGKDGGSGLRELKSLTHLQGTLQISKLENVKDVGDACEAQLNSKENLQALLL 274 (788)
Q Consensus 196 l~~~~~l~~~p~-~i~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l 274 (788)
+++|. +..+|. .+..+++|++|++.++.... .+ ....+.++++|+.|++
T Consensus 154 L~~N~-l~~~~~~~~~~l~~L~~L~l~~~~~l~-----------~i------------------~~~~~~~l~~L~~L~L 203 (452)
T 3zyi_A 154 LRNNP-IESIPSYAFNRVPSLMRLDLGELKKLE-----------YI------------------SEGAFEGLFNLKYLNL 203 (452)
T ss_dssp CCSCC-CCEECTTTTTTCTTCCEEECCCCTTCC-----------EE------------------CTTTTTTCTTCCEEEC
T ss_pred CCCCC-cceeCHhHHhcCCcccEEeCCCCCCcc-----------cc------------------ChhhccCCCCCCEEEC
Confidence 55554 444443 24455555555442211000 00 0001223334444444
Q ss_pred EeecCcccCccchhhhhhhcccCccccccceEEEEeeCCCCC-CcccCCCCCCCeeEEEECCCCCCCC-C-CCCCCCCcc
Q 003899 275 KWSTRDVQNLDQCEFETHVLSVLKPHQDVQELTITGYGGTKF-PIWLGDSSFSKLARLELCRCTSTSL-P-SVGQLPFLM 351 (788)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-p~~~~~~~~~~L~~L~L~~~~~~~l-~-~l~~l~~L~ 351 (788)
+.+.. .....+..+++|+.|++++|....+ |.++. .+++|+.|++++|.+..+ + .+..+++|+
T Consensus 204 ~~n~l------------~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~--~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 269 (452)
T 3zyi_A 204 GMCNI------------KDMPNLTPLVGLEELEMSGNHFPEIRPGSFH--GLSSLKKLWVMNSQVSLIERNAFDGLASLV 269 (452)
T ss_dssp TTSCC------------SSCCCCTTCTTCCEEECTTSCCSEECGGGGT--TCTTCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred CCCcc------------cccccccccccccEEECcCCcCcccCccccc--CccCCCEEEeCCCcCceECHHHhcCCCCCC
Confidence 43332 0112244455666666666655544 33443 566666777766666222 2 266667777
Q ss_pred EEEecCCCCceEeCcccccCCCCCCCCCcceEecccc
Q 003899 352 ELDISGMDGVKSVGSEFYRRSCSVPFPSLETLSFSDM 388 (788)
Q Consensus 352 ~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 388 (788)
.|++++|. +..++...+.. +++|+.|++.++
T Consensus 270 ~L~L~~N~-l~~~~~~~~~~-----l~~L~~L~L~~N 300 (452)
T 3zyi_A 270 ELNLAHNN-LSSLPHDLFTP-----LRYLVELHLHHN 300 (452)
T ss_dssp EEECCSSC-CSCCCTTSSTT-----CTTCCEEECCSS
T ss_pred EEECCCCc-CCccChHHhcc-----ccCCCEEEccCC
Confidence 77776663 33444433332 666777777664
No 63
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.75 E-value=3.8e-18 Score=185.29 Aligned_cols=220 Identities=16% Similarity=0.202 Sum_probs=149.5
Q ss_pred CceeEEEeccCCccccchhhhhHHHHhCCCCCeeEEEccCCcCccccc-ccccCCCCCceeeccCCcccccch-hhhccc
Q 003899 88 EHLRTFLPVNLSNYRINYLAWSVLQMLMNLPRLRVFSLHGYSNIIELP-NEIENLKHLRFLNLSRTSIQILPE-SINSLY 165 (788)
Q Consensus 88 ~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~l~~lp-~~~~~l~~L~~L~L~~~~i~~lp~-~i~~L~ 165 (788)
++++.|.+.++. +....+..|.++++|++|+|++| .+..++ ..|.++.+|++|+|++|.++.+|. .+..++
T Consensus 64 ~~l~~L~L~~n~------i~~~~~~~~~~l~~L~~L~Ls~n-~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 136 (440)
T 3zyj_A 64 TNTRLLNLHENQ------IQIIKVNSFKHLRHLEILQLSRN-HIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLS 136 (440)
T ss_dssp TTCSEEECCSCC------CCEECTTTTSSCSSCCEEECCSS-CCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCS
T ss_pred CCCcEEEccCCc------CCeeCHHHhhCCCCCCEEECCCC-cCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccc
Confidence 678888888764 22222347999999999999999 888886 778999999999999999999965 689999
Q ss_pred cCcEEEccCccchhhchh-hhhcccCCceEecCCCcCcccCCcc-CcCCCCcceeCceEeCCCCCCCcccccccccCCce
Q 003899 166 NLNTILLEDCYQLKKLCN-DMGNLKKLRHLKSSNVDSLEEMPKG-FGKLTCLLTLGTFVVGKDGGSGLRELKSLTHLQGT 243 (788)
Q Consensus 166 ~L~~L~L~~~~~l~~lp~-~i~~L~~L~~L~l~~~~~l~~~p~~-i~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~ 243 (788)
+|++|+|++| .+..+|. .+..+++|++|++++|..+..++.. +..+++|++|++.++... .++
T Consensus 137 ~L~~L~L~~N-~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~------~~~-------- 201 (440)
T 3zyj_A 137 KLKELWLRNN-PIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR------EIP-------- 201 (440)
T ss_dssp SCCEEECCSC-CCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS------SCC--------
T ss_pred cCceeeCCCC-cccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc------ccc--------
Confidence 9999999999 7777776 4899999999999997768888775 888999999987544321 111
Q ss_pred eEEeccCCCCCchhhhhcccCCCcCCceEEEEeecCcccCccchhhhhhhcccCccccccceEEEEeeCCCCCCc-ccCC
Q 003899 244 LQISKLENVKDVGDACEAQLNSKENLQALLLKWSTRDVQNLDQCEFETHVLSVLKPHQDVQELTITGYGGTKFPI-WLGD 322 (788)
Q Consensus 244 l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~-~~~~ 322 (788)
.+..+++|+.|+++++.. ....+..+..+++|+.|+++++....++. ++.
T Consensus 202 ------------------~~~~l~~L~~L~Ls~N~l----------~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~- 252 (440)
T 3zyj_A 202 ------------------NLTPLIKLDELDLSGNHL----------SAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFD- 252 (440)
T ss_dssp ------------------CCTTCSSCCEEECTTSCC----------CEECTTTTTTCTTCCEEECTTCCCCEECTTSST-
T ss_pred ------------------ccCCCcccCEEECCCCcc----------CccChhhhccCccCCEEECCCCceeEEChhhhc-
Confidence 123334555666555443 22223344455555555555555444322 222
Q ss_pred CCCCCeeEEEECCCCCCCCCC--CCCCCCccEEEecCCC
Q 003899 323 SSFSKLARLELCRCTSTSLPS--VGQLPFLMELDISGMD 359 (788)
Q Consensus 323 ~~~~~L~~L~L~~~~~~~l~~--l~~l~~L~~L~l~~~~ 359 (788)
.+++|+.|++++|.+..++. +..+++|+.|++++|+
T Consensus 253 -~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 253 -NLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNP 290 (440)
T ss_dssp -TCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSC
T ss_pred -CCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCC
Confidence 45555555555555533332 4455555555555553
No 64
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.75 E-value=1.9e-20 Score=205.38 Aligned_cols=381 Identities=16% Similarity=0.122 Sum_probs=233.4
Q ss_pred CCceeEEEEEccCCccccccccccCCCceeEEEeccCCccccchhhhhHHHHhCCCCCeeEEEccCCcCcccc-cccc-c
Q 003899 62 CQSLRHFSYICGESDGEKRLQSVCDVEHLRTFLPVNLSNYRINYLAWSVLQMLMNLPRLRVFSLHGYSNIIEL-PNEI-E 139 (788)
Q Consensus 62 ~~~~r~lsl~~~~~~~~~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~l~~l-p~~~-~ 139 (788)
+..++++.+.++.+.......-+..+++|+.|.+.++.-.. .....++..+..+++|++|++++| .+... +..+ .
T Consensus 2 ~~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~--~~~~~l~~~l~~~~~L~~L~Ls~n-~l~~~~~~~l~~ 78 (461)
T 1z7x_W 2 SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTE--ARCKDISSALRVNPALAELNLRSN-ELGDVGVHCVLQ 78 (461)
T ss_dssp CEEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCH--HHHHHHHHHHHTCTTCCEEECTTC-CCHHHHHHHHHH
T ss_pred CccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCH--HHHHHHHHHHHhCCCcCEEeCCCC-cCChHHHHHHHH
Confidence 45688899988766543322336778899999998864100 011245668899999999999999 77653 3333 4
Q ss_pred CCC----CCceeeccCCccc-----ccchhhhccccCcEEEccCccchhh-chhhhh-----cccCCceEecCCCcCccc
Q 003899 140 NLK----HLRFLNLSRTSIQ-----ILPESINSLYNLNTILLEDCYQLKK-LCNDMG-----NLKKLRHLKSSNVDSLEE 204 (788)
Q Consensus 140 ~l~----~L~~L~L~~~~i~-----~lp~~i~~L~~L~~L~L~~~~~l~~-lp~~i~-----~L~~L~~L~l~~~~~l~~ 204 (788)
.+. +|++|+|++|.|+ .+|..+..+++|++|++++| .+.. .+..+. ..++|++|++++|. +..
T Consensus 79 ~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~ 156 (461)
T 1z7x_W 79 GLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDN-LLGDAGLQLLCEGLLDPQCRLEKLQLEYCS-LSA 156 (461)
T ss_dssp TTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSS-BCHHHHHHHHHHHHTSTTCCCCEEECTTSC-CBG
T ss_pred HHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCC-cCchHHHHHHHHHHhcCCCcceEEECCCCC-CCH
Confidence 455 7999999999998 46888999999999999999 4543 233333 25689999999998 443
Q ss_pred -----CCccCcCCCCcceeCceEeCCCCCCCcccccccccCCceeEEeccCCCCCchhhhhcccC-CCcCCceEEEEeec
Q 003899 205 -----MPKGFGKLTCLLTLGTFVVGKDGGSGLRELKSLTHLQGTLQISKLENVKDVGDACEAQLN-SKENLQALLLKWST 278 (788)
Q Consensus 205 -----~p~~i~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~~~~~~~~~~~~~~~~~~l~-~~~~L~~L~l~~~~ 278 (788)
++..+..+++|++|++.++..... .+ ......+. ..++|+.|+++++.
T Consensus 157 ~~~~~l~~~l~~~~~L~~L~L~~n~i~~~-~~-------------------------~~l~~~l~~~~~~L~~L~L~~n~ 210 (461)
T 1z7x_W 157 ASCEPLASVLRAKPDFKELTVSNNDINEA-GV-------------------------RVLCQGLKDSPCQLEALKLESCG 210 (461)
T ss_dssp GGHHHHHHHHHHCTTCCEEECCSSBCHHH-HH-------------------------HHHHHHHHHSCCCCCEEECTTSC
T ss_pred HHHHHHHHHHhhCCCCCEEECcCCCcchH-HH-------------------------HHHHHHHhcCCCCceEEEccCCC
Confidence 345567788999998755432110 00 00001111 23466777776654
Q ss_pred CcccCccchhhhhhhcccCccccccceEEEEeeCCCCC------CcccCCCCCCCeeEEEECCCCCCC-----CCC-CCC
Q 003899 279 RDVQNLDQCEFETHVLSVLKPHQDVQELTITGYGGTKF------PIWLGDSSFSKLARLELCRCTSTS-----LPS-VGQ 346 (788)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~------p~~~~~~~~~~L~~L~L~~~~~~~-----l~~-l~~ 346 (788)
.. ..........+..+++|+.|+++++..... +.+.. .+++|+.|++++|.+.. ++. +..
T Consensus 211 l~------~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~--~~~~L~~L~L~~n~l~~~~~~~l~~~l~~ 282 (461)
T 1z7x_W 211 VT------SDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLH--PSSRLRTLWIWECGITAKGCGDLCRVLRA 282 (461)
T ss_dssp CB------TTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTS--TTCCCCEEECTTSCCCHHHHHHHHHHHHH
T ss_pred Cc------HHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhc--CCCCceEEECcCCCCCHHHHHHHHHHHhh
Confidence 40 000112334455667788888877654321 11221 46788888888887733 332 556
Q ss_pred CCCccEEEecCCCCceEeCcccccCCCCCCCCCcceEecccccccccccccCCCCcccccCCcccEEeeecCcccccC--
Q 003899 347 LPFLMELDISGMDGVKSVGSEFYRRSCSVPFPSLETLSFSDMREWEEWIPCGAGQEVDEVFPKLRKLSLFNCHKLQGK-- 424 (788)
Q Consensus 347 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~-- 424 (788)
+++|++|++++|.. ...+............++|++|+++++. +...... .-......+++|++|++++| .+.+.
T Consensus 283 ~~~L~~L~Ls~n~i-~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~-~l~~~l~~~~~L~~L~Ls~n-~i~~~~~ 358 (461)
T 1z7x_W 283 KESLKELSLAGNEL-GDEGARLLCETLLEPGCQLESLWVKSCS-FTAACCS-HFSSVLAQNRFLLELQISNN-RLEDAGV 358 (461)
T ss_dssp CTTCCEEECTTCCC-HHHHHHHHHHHHTSTTCCCCEEECTTSC-CBGGGHH-HHHHHHHHCSSCCEEECCSS-BCHHHHH
T ss_pred CCCcceEECCCCCC-chHHHHHHHHHhccCCccceeeEcCCCC-CchHHHH-HHHHHHhhCCCccEEEccCC-ccccccH
Confidence 78888888888853 2211111110000114688888888864 2221100 00002335689999999988 45421
Q ss_pred ------CCCCCCCccEEEEeccCCc-------ccccCCCCCccEEEeccCCccee------cCC-cCCCCccEEeccccc
Q 003899 425 ------LPKRLLLLETLVIKSCQQL-------LVTIQCLPALSELQIDGCERVVF------SSP-IDLSSLKSVHLAYVA 484 (788)
Q Consensus 425 ------lp~~l~~L~~L~l~~c~~l-------~~~~~~~~~L~~L~l~~~~~~~~------~~~-~~~~~L~~L~l~~~~ 484 (788)
++...++|++|++++|... ...+..+++|++|++++|..... ..+ ....+|+.|.+.++.
T Consensus 359 ~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~ 438 (461)
T 1z7x_W 359 RELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIY 438 (461)
T ss_dssp HHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCC
T ss_pred HHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHHHHHHHHHHhccCCcchhheeecccc
Confidence 1123568999999988543 23455689999999999984321 111 224578888887755
Q ss_pred c
Q 003899 485 N 485 (788)
Q Consensus 485 ~ 485 (788)
.
T Consensus 439 ~ 439 (461)
T 1z7x_W 439 W 439 (461)
T ss_dssp C
T ss_pred c
Confidence 4
No 65
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.73 E-value=7e-19 Score=181.88 Aligned_cols=248 Identities=12% Similarity=0.073 Sum_probs=186.5
Q ss_pred ccCCCceeEEEeccCCccccchhhhhHHHHhCCCCCeeEEEccCCcCcccccccccCCCCCceeeccCCcccccchhhhc
Q 003899 84 VCDVEHLRTFLPVNLSNYRINYLAWSVLQMLMNLPRLRVFSLHGYSNIIELPNEIENLKHLRFLNLSRTSIQILPESINS 163 (788)
Q Consensus 84 ~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~ 163 (788)
+..+++|+.|.+.++. +....|..|..+++|++|++++| .+..++. +..+++|++|++++|.++.+|.
T Consensus 30 ~~~~~~L~~L~L~~n~------l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~-~~~l~~L~~L~Ls~n~l~~l~~---- 97 (317)
T 3o53_A 30 RQSAWNVKELDLSGNP------LSQISAADLAPFTKLELLNLSSN-VLYETLD-LESLSTLRTLDLNNNYVQELLV---- 97 (317)
T ss_dssp HTTGGGCSEEECTTSC------CCCCCHHHHTTCTTCCEEECTTS-CCEEEEE-ETTCTTCCEEECCSSEEEEEEE----
T ss_pred hccCCCCCEEECcCCc------cCcCCHHHhhCCCcCCEEECCCC-cCCcchh-hhhcCCCCEEECcCCccccccC----
Confidence 3457789999998864 33444568999999999999999 8877754 9999999999999999998763
Q ss_pred cccCcEEEccCccchhhchhhhhcccCCceEecCCCcCcccCCc-cCcCCCCcceeCceEeCCCCCCCcccccccccCCc
Q 003899 164 LYNLNTILLEDCYQLKKLCNDMGNLKKLRHLKSSNVDSLEEMPK-GFGKLTCLLTLGTFVVGKDGGSGLRELKSLTHLQG 242 (788)
Q Consensus 164 L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~-~i~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~ 242 (788)
.++|++|++++| .+..+|. ..+++|++|++++|. +..++. .++.+++|++|++.++....
T Consensus 98 ~~~L~~L~l~~n-~l~~~~~--~~~~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~--------------- 158 (317)
T 3o53_A 98 GPSIETLHAANN-NISRVSC--SRGQGKKNIYLANNK-ITMLRDLDEGCRSRVQYLDLKLNEIDT--------------- 158 (317)
T ss_dssp CTTCCEEECCSS-CCSEEEE--CCCSSCEEEECCSSC-CCSGGGBCTGGGSSEEEEECTTSCCCE---------------
T ss_pred CCCcCEEECCCC-ccCCcCc--cccCCCCEEECCCCC-CCCccchhhhccCCCCEEECCCCCCCc---------------
Confidence 489999999999 7777764 347899999999999 666654 68899999999885543211
Q ss_pred eeEEeccCCCCCchhhhhcccCCCcCCceEEEEeecCcccCccchhhhhhhcccCccccccceEEEEeeCCCCCCcccCC
Q 003899 243 TLQISKLENVKDVGDACEAQLNSKENLQALLLKWSTRDVQNLDQCEFETHVLSVLKPHQDVQELTITGYGGTKFPIWLGD 322 (788)
Q Consensus 243 ~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~ 322 (788)
.. . ......+++|+.|+++++.. . .......+++|+.|++++|....+|..+.
T Consensus 159 -~~----------~---~~~~~~l~~L~~L~L~~N~l----------~--~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~- 211 (317)
T 3o53_A 159 -VN----------F---AELAASSDTLEHLNLQYNFI----------Y--DVKGQVVFAKLKTLDLSSNKLAFMGPEFQ- 211 (317)
T ss_dssp -EE----------G---GGGGGGTTTCCEEECTTSCC----------C--EEECCCCCTTCCEEECCSSCCCEECGGGG-
T ss_pred -cc----------H---HHHhhccCcCCEEECCCCcC----------c--ccccccccccCCEEECCCCcCCcchhhhc-
Confidence 00 0 00012346788888877665 1 11333457899999999999988887765
Q ss_pred CCCCCeeEEEECCCCCCCCCC-CCCCCCccEEEecCCCCceEeCcccccCCCCCCCCCcceEeccccccccccc
Q 003899 323 SSFSKLARLELCRCTSTSLPS-VGQLPFLMELDISGMDGVKSVGSEFYRRSCSVPFPSLETLSFSDMREWEEWI 395 (788)
Q Consensus 323 ~~~~~L~~L~L~~~~~~~l~~-l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~ 395 (788)
.+++|+.|++++|.+..+|. +..+++|+.|++++|+........+.+. +++|+.+++.++..+....
T Consensus 212 -~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~-----~~~L~~l~l~~~~~l~~~~ 279 (317)
T 3o53_A 212 -SAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSK-----NQRVQTVAKQTVKKLTGQN 279 (317)
T ss_dssp -GGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCCBHHHHHHHHHT-----CHHHHHHHHHHHHHHHSSS
T ss_pred -ccCcccEEECcCCcccchhhHhhcCCCCCEEEccCCCccCcCHHHHHhc-----cccceEEECCCchhccCCc
Confidence 78999999999999966665 8889999999999997652222233332 8889999988766655543
No 66
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.73 E-value=1.7e-19 Score=204.82 Aligned_cols=63 Identities=19% Similarity=0.326 Sum_probs=31.2
Q ss_pred CccccccceEEEEeeCCC----CCC-cc-------cC--CCCCCCeeEEEECCCCC--CCCCCCC-CCCCccEEEecCCC
Q 003899 297 LKPHQDVQELTITGYGGT----KFP-IW-------LG--DSSFSKLARLELCRCTS--TSLPSVG-QLPFLMELDISGMD 359 (788)
Q Consensus 297 l~~~~~L~~L~l~~~~~~----~~p-~~-------~~--~~~~~~L~~L~L~~~~~--~~l~~l~-~l~~L~~L~l~~~~ 359 (788)
+..+++|++|++.++... ..| .| +. ...+++|++|++++|.+ ..+..+. .+++|++|++++|.
T Consensus 62 ~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~ 141 (594)
T 2p1m_B 62 IRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCE 141 (594)
T ss_dssp HHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCE
T ss_pred HhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcC
Confidence 345577888888875421 111 11 10 01345666666666654 1111222 35566666666654
No 67
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.71 E-value=9.6e-17 Score=163.31 Aligned_cols=101 Identities=24% Similarity=0.310 Sum_probs=50.6
Q ss_pred CCeeEEEccCCcCccccc-ccccCCCCCceeeccCCccccc-chhhhccccCcEEEccCccchhhc-hhhhhcccCCceE
Q 003899 118 PRLRVFSLHGYSNIIELP-NEIENLKHLRFLNLSRTSIQIL-PESINSLYNLNTILLEDCYQLKKL-CNDMGNLKKLRHL 194 (788)
Q Consensus 118 ~~Lr~L~L~~~~~l~~lp-~~~~~l~~L~~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~~~l~~l-p~~i~~L~~L~~L 194 (788)
++|++|++++| .+..+| ..|..+++|++|+|++|.++.+ |..+..+++|++|++++|..+..+ |..+..+++|++|
T Consensus 32 ~~l~~L~l~~n-~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L 110 (285)
T 1ozn_A 32 AASQRIFLHGN-RISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTL 110 (285)
T ss_dssp TTCSEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEE
T ss_pred CCceEEEeeCC-cCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEE
Confidence 45555555555 555554 3455555555555555555544 445555555555555555324444 3345555555555
Q ss_pred ecCCCcCcccC-CccCcCCCCcceeCc
Q 003899 195 KSSNVDSLEEM-PKGFGKLTCLLTLGT 220 (788)
Q Consensus 195 ~l~~~~~l~~~-p~~i~~l~~L~~L~~ 220 (788)
++++|. +..+ |..++.+++|++|++
T Consensus 111 ~l~~n~-l~~~~~~~~~~l~~L~~L~l 136 (285)
T 1ozn_A 111 HLDRCG-LQELGPGLFRGLAALQYLYL 136 (285)
T ss_dssp ECTTSC-CCCCCTTTTTTCTTCCEEEC
T ss_pred ECCCCc-CCEECHhHhhCCcCCCEEEC
Confidence 555555 3333 222444444444443
No 68
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.71 E-value=3.3e-17 Score=166.78 Aligned_cols=124 Identities=21% Similarity=0.277 Sum_probs=82.4
Q ss_pred CCceeEEEeccCCccccchhhhhHH-HHhCCCCCeeEEEccCCcCcccc-cccccCCCCCceeeccCCc-cccc-chhhh
Q 003899 87 VEHLRTFLPVNLSNYRINYLAWSVL-QMLMNLPRLRVFSLHGYSNIIEL-PNEIENLKHLRFLNLSRTS-IQIL-PESIN 162 (788)
Q Consensus 87 ~~~Lr~L~~~~~~~~~~~~~~~~~~-~~~~~l~~Lr~L~L~~~~~l~~l-p~~~~~l~~L~~L~L~~~~-i~~l-p~~i~ 162 (788)
.++++.|.+.++. + ..++ ..|..+++|++|++++| .+..+ |..|.++++|++|++++|. +..+ |..+.
T Consensus 31 ~~~l~~L~l~~n~------i-~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~ 102 (285)
T 1ozn_A 31 PAASQRIFLHGNR------I-SHVPAASFRACRNLTILWLHSN-VLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFH 102 (285)
T ss_dssp CTTCSEEECTTSC------C-CEECTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTT
T ss_pred CCCceEEEeeCCc------C-CccCHHHcccCCCCCEEECCCC-ccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhc
Confidence 4567777766653 2 2233 25777777777777777 66666 4667777777777777776 6666 56677
Q ss_pred ccccCcEEEccCccchhhc-hhhhhcccCCceEecCCCcCcccCCcc-CcCCCCcceeCc
Q 003899 163 SLYNLNTILLEDCYQLKKL-CNDMGNLKKLRHLKSSNVDSLEEMPKG-FGKLTCLLTLGT 220 (788)
Q Consensus 163 ~L~~L~~L~L~~~~~l~~l-p~~i~~L~~L~~L~l~~~~~l~~~p~~-i~~l~~L~~L~~ 220 (788)
.+++|++|++++| .+..+ |..+..+++|++|++++|. +..+|.. ++.+++|++|++
T Consensus 103 ~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l 160 (285)
T 1ozn_A 103 GLGRLHTLHLDRC-GLQELGPGLFRGLAALQYLYLQDNA-LQALPDDTFRDLGNLTHLFL 160 (285)
T ss_dssp TCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEEC
T ss_pred CCcCCCEEECCCC-cCCEECHhHhhCCcCCCEEECCCCc-ccccCHhHhccCCCccEEEC
Confidence 7777777777777 45444 4446777777777777776 5555543 566666666665
No 69
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.70 E-value=1.2e-17 Score=172.04 Aligned_cols=201 Identities=19% Similarity=0.231 Sum_probs=99.5
Q ss_pred CCCCeeEEEccCCcCcc-cccccc--cCCCCCceeeccCCcccccchhhhcc-----ccCcEEEccCccchhhch-hhhh
Q 003899 116 NLPRLRVFSLHGYSNII-ELPNEI--ENLKHLRFLNLSRTSIQILPESINSL-----YNLNTILLEDCYQLKKLC-NDMG 186 (788)
Q Consensus 116 ~l~~Lr~L~L~~~~~l~-~lp~~~--~~l~~L~~L~L~~~~i~~lp~~i~~L-----~~L~~L~L~~~~~l~~lp-~~i~ 186 (788)
.+++|++|++++| .+. .+|..+ +.+++|++|+|++|.++.+|..++.+ ++|++|++++| .+..+| ..++
T Consensus 93 ~l~~L~~L~L~~n-~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N-~l~~~~~~~~~ 170 (312)
T 1wwl_A 93 GISGLQELTLENL-EVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQA-HSLNFSCEQVR 170 (312)
T ss_dssp TTSCCCEEEEEEE-BCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESC-SCCCCCTTTCC
T ss_pred CcCCccEEEccCC-cccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCC-CCccchHHHhc
Confidence 4555555555555 443 345443 55555555555555555555555554 55555555555 344443 3455
Q ss_pred cccCCceEecCCCcCccc--CCccC--cCCCCcceeCceEeCCCCCCCcccccccccCCceeEEeccCCCCCchhhhhcc
Q 003899 187 NLKKLRHLKSSNVDSLEE--MPKGF--GKLTCLLTLGTFVVGKDGGSGLRELKSLTHLQGTLQISKLENVKDVGDACEAQ 262 (788)
Q Consensus 187 ~L~~L~~L~l~~~~~l~~--~p~~i--~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~~~~~~~~~~~~~~~~~~ 262 (788)
.+++|++|++++|...+. +|..+ +.+++|++|++.++... .........
T Consensus 171 ~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~---------------------------~~~~~~~~~ 223 (312)
T 1wwl_A 171 VFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGME---------------------------TPSGVCSAL 223 (312)
T ss_dssp CCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCC---------------------------CHHHHHHHH
T ss_pred cCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCc---------------------------chHHHHHHH
Confidence 555555555555552222 22222 45555555554322111 000111111
Q ss_pred cCCCcCCceEEEEeecCcccCccchhhhhhh-cccCccccccceEEEEeeCCCCCCcccCCCCCCCeeEEEECCCCCCCC
Q 003899 263 LNSKENLQALLLKWSTRDVQNLDQCEFETHV-LSVLKPHQDVQELTITGYGGTKFPIWLGDSSFSKLARLELCRCTSTSL 341 (788)
Q Consensus 263 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~-~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~L~~~~~~~l 341 (788)
+..+++|+.|+++++.. .... ...+..+++|+.|++++|....+|.++. ++|+.|++++|.+..+
T Consensus 224 ~~~l~~L~~L~Ls~N~l----------~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~----~~L~~L~Ls~N~l~~~ 289 (312)
T 1wwl_A 224 AAARVQLQGLDLSHNSL----------RDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLP----AKLSVLDLSYNRLDRN 289 (312)
T ss_dssp HHTTCCCSEEECTTSCC----------CSSCCCSCCCCCTTCCEEECTTSCCSSCCSSCC----SEEEEEECCSSCCCSC
T ss_pred HhcCCCCCEEECCCCcC----------CcccchhhhhhcCCCCEEECCCCccChhhhhcc----CCceEEECCCCCCCCC
Confidence 22345566666655543 1111 1233344566666666666665555442 5666666666666444
Q ss_pred CCCCCCCCccEEEecCCC
Q 003899 342 PSVGQLPFLMELDISGMD 359 (788)
Q Consensus 342 ~~l~~l~~L~~L~l~~~~ 359 (788)
|.+..+++|++|++++|+
T Consensus 290 p~~~~l~~L~~L~L~~N~ 307 (312)
T 1wwl_A 290 PSPDELPQVGNLSLKGNP 307 (312)
T ss_dssp CCTTTSCEEEEEECTTCT
T ss_pred hhHhhCCCCCEEeccCCC
Confidence 556666666666666654
No 70
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.69 E-value=5.4e-17 Score=177.60 Aligned_cols=100 Identities=15% Similarity=0.177 Sum_probs=79.7
Q ss_pred hCCCCCeeEEEccCCcCccccc-ccccCCCCCceeeccCCcccccchhhhccccCcEEEccCccchhhchhhhhcccCCc
Q 003899 114 LMNLPRLRVFSLHGYSNIIELP-NEIENLKHLRFLNLSRTSIQILPESINSLYNLNTILLEDCYQLKKLCNDMGNLKKLR 192 (788)
Q Consensus 114 ~~~l~~Lr~L~L~~~~~l~~lp-~~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~ 192 (788)
...+++|++|+|++| .+..+| ..|+.+++|++|+|++|.++.+++ ++.+++|++|+|++| .+..+|. .++|+
T Consensus 30 ~~~~~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N-~l~~l~~----~~~L~ 102 (487)
T 3oja_A 30 RQSAWNVKELDLSGN-PLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNN-YVQELLV----GPSIE 102 (487)
T ss_dssp STTGGGCCEEECCSS-CCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSS-EEEEEEE----CTTCC
T ss_pred cccCCCccEEEeeCC-cCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCC-cCCCCCC----CCCcC
Confidence 344558999999999 888875 788999999999999999987765 999999999999999 7777764 38999
Q ss_pred eEecCCCcCcccCCccCcCCCCcceeCceEe
Q 003899 193 HLKSSNVDSLEEMPKGFGKLTCLLTLGTFVV 223 (788)
Q Consensus 193 ~L~l~~~~~l~~~p~~i~~l~~L~~L~~~~~ 223 (788)
+|++++|. +..+|.. .+++|++|++.++
T Consensus 103 ~L~L~~N~-l~~~~~~--~l~~L~~L~L~~N 130 (487)
T 3oja_A 103 TLHAANNN-ISRVSCS--RGQGKKNIYLANN 130 (487)
T ss_dssp EEECCSSC-CCCEEEC--CCSSCEEEECCSS
T ss_pred EEECcCCc-CCCCCcc--ccCCCCEEECCCC
Confidence 99999998 6555543 3566777766443
No 71
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.69 E-value=1.1e-16 Score=162.49 Aligned_cols=103 Identities=22% Similarity=0.270 Sum_probs=67.1
Q ss_pred hCCCCCeeEEEccCCcCcccccccccCCCCCceeeccCCccccc-chhhhccccCcEEEccCccchhhchhhhhcccCCc
Q 003899 114 LMNLPRLRVFSLHGYSNIIELPNEIENLKHLRFLNLSRTSIQIL-PESINSLYNLNTILLEDCYQLKKLCNDMGNLKKLR 192 (788)
Q Consensus 114 ~~~l~~Lr~L~L~~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~ 192 (788)
+.++++++.++++++ .++.+|..+. +++++|+|++|.++.+ |..+..+++|++|++++| .+..+|.. +.+++|+
T Consensus 6 ~~~l~~l~~l~~~~~-~l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~-~~l~~L~ 80 (290)
T 1p9a_G 6 VSKVASHLEVNCDKR-NLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRA-ELTKLQVD-GTLPVLG 80 (290)
T ss_dssp EECSTTCCEEECTTS-CCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTS-CCCEEECC-SCCTTCC
T ss_pred ccccCCccEEECCCC-CCCcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCC-ccCcccCC-CCCCcCC
Confidence 445666677777766 6666665553 4667777777777665 455666777777777776 56666553 6667777
Q ss_pred eEecCCCcCcccCCccCcCCCCcceeCceE
Q 003899 193 HLKSSNVDSLEEMPKGFGKLTCLLTLGTFV 222 (788)
Q Consensus 193 ~L~l~~~~~l~~~p~~i~~l~~L~~L~~~~ 222 (788)
+|++++|. +..+|..+..+++|++|++.+
T Consensus 81 ~L~Ls~N~-l~~l~~~~~~l~~L~~L~l~~ 109 (290)
T 1p9a_G 81 TLDLSHNQ-LQSLPLLGQTLPALTVLDVSF 109 (290)
T ss_dssp EEECCSSC-CSSCCCCTTTCTTCCEEECCS
T ss_pred EEECCCCc-CCcCchhhccCCCCCEEECCC
Confidence 77777776 666666666666666666543
No 72
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.69 E-value=6.4e-17 Score=166.05 Aligned_cols=190 Identities=17% Similarity=0.209 Sum_probs=112.6
Q ss_pred CCCCeeEEEccCCcCcccccccccCCCCCceeeccCCcccccchhhhccccCcEEEccCccchhhchhhhhcccCCceEe
Q 003899 116 NLPRLRVFSLHGYSNIIELPNEIENLKHLRFLNLSRTSIQILPESINSLYNLNTILLEDCYQLKKLCNDMGNLKKLRHLK 195 (788)
Q Consensus 116 ~l~~Lr~L~L~~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~ 195 (788)
.+++|++|++++| .+..+| .+..+++|++|++++|.+..+|. +..+++|++|++++| .+..+| .+..+++|++|+
T Consensus 39 ~l~~L~~L~l~~~-~i~~l~-~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n-~l~~~~-~~~~l~~L~~L~ 113 (308)
T 1h6u_A 39 DLDGITTLSAFGT-GVTTIE-GVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGN-PLKNVS-AIAGLQSIKTLD 113 (308)
T ss_dssp HHHTCCEEECTTS-CCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSC-CCSCCG-GGTTCTTCCEEE
T ss_pred HcCCcCEEEeeCC-CccCch-hhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCC-cCCCch-hhcCCCCCCEEE
Confidence 3556777777777 666665 56677777777777777777766 777777777777777 566665 477777777777
Q ss_pred cCCCcCcccCCccCcCCCCcceeCceEeCCCCCCCcccccccccCCceeEEeccCCCCCchhhhhcccCCCcCCceEEEE
Q 003899 196 SSNVDSLEEMPKGFGKLTCLLTLGTFVVGKDGGSGLRELKSLTHLQGTLQISKLENVKDVGDACEAQLNSKENLQALLLK 275 (788)
Q Consensus 196 l~~~~~l~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~ 275 (788)
+++|. +..+|. ++.+++|++|++.++....... +..+++|+.|+++
T Consensus 114 l~~n~-l~~~~~-l~~l~~L~~L~l~~n~l~~~~~--------------------------------l~~l~~L~~L~l~ 159 (308)
T 1h6u_A 114 LTSTQ-ITDVTP-LAGLSNLQVLYLDLNQITNISP--------------------------------LAGLTNLQYLSIG 159 (308)
T ss_dssp CTTSC-CCCCGG-GTTCTTCCEEECCSSCCCCCGG--------------------------------GGGCTTCCEEECC
T ss_pred CCCCC-CCCchh-hcCCCCCCEEECCCCccCcCcc--------------------------------ccCCCCccEEEcc
Confidence 77776 555554 6666666666664432211000 2222344444444
Q ss_pred eecCcccCccchhhhhhhcccCccccccceEEEEeeCCCCCCcccCCCCCCCeeEEEECCCCCCCCCCCCCCCCccEEEe
Q 003899 276 WSTRDVQNLDQCEFETHVLSVLKPHQDVQELTITGYGGTKFPIWLGDSSFSKLARLELCRCTSTSLPSVGQLPFLMELDI 355 (788)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~L~~~~~~~l~~l~~l~~L~~L~l 355 (788)
.+.. . ....+..+++|+.|++++|....++. +. .+++|+.|++++|.+..++++..+++|+.|++
T Consensus 160 ~n~l----------~--~~~~l~~l~~L~~L~l~~n~l~~~~~-l~--~l~~L~~L~L~~N~l~~~~~l~~l~~L~~L~l 224 (308)
T 1h6u_A 160 NAQV----------S--DLTPLANLSKLTTLKADDNKISDISP-LA--SLPNLIEVHLKNNQISDVSPLANTSNLFIVTL 224 (308)
T ss_dssp SSCC----------C--CCGGGTTCTTCCEEECCSSCCCCCGG-GG--GCTTCCEEECTTSCCCBCGGGTTCTTCCEEEE
T ss_pred CCcC----------C--CChhhcCCCCCCEEECCCCccCcChh-hc--CCCCCCEEEccCCccCccccccCCCCCCEEEc
Confidence 4332 0 01114445566666666665555544 22 46666666666666655555666666666666
Q ss_pred cCCC
Q 003899 356 SGMD 359 (788)
Q Consensus 356 ~~~~ 359 (788)
++|+
T Consensus 225 ~~N~ 228 (308)
T 1h6u_A 225 TNQT 228 (308)
T ss_dssp EEEE
T ss_pred cCCe
Confidence 6664
No 73
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.69 E-value=4.8e-16 Score=153.50 Aligned_cols=199 Identities=16% Similarity=0.168 Sum_probs=132.2
Q ss_pred CCccEEEEecCcccchhhhcccccccCCCCCCeEEcccCCCccccccCccccccCCCCcccccceEEEEEecCccCcccc
Q 003899 498 PKLENLVIVEVREQAYLWQSETRLLQDIRSLNRLHISRCPRLLSLVTDEEHDQQQPESPYRLRFLELKIFIYDLENLQSL 577 (788)
Q Consensus 498 ~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~l~~L~L~L~l~~~~~l~~l 577 (788)
++|+.|++++|...... +..+..+++|++|+++++..++.++..
T Consensus 31 ~~l~~L~l~~n~l~~i~----~~~~~~l~~L~~L~l~~n~~l~~i~~~-------------------------------- 74 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIP----SHAFSNLPNISRIYVSIDVTLQQLESH-------------------------------- 74 (239)
T ss_dssp TTCCEEEEESCCCSEEC----TTTTTTCTTCCEEEEECCSSCCEECTT--------------------------------
T ss_pred CcccEEEEeCCcceEEC----HHHccCCCCCcEEeCCCCCCcceeCHh--------------------------------
Confidence 46777777777765554 446667777777777775434443321
Q ss_pred cccccCCCCcceEEEecCCCCcccCCCC-CCCCcccEEEecccccccccccccCccceEeccCCCCCCCCCCCCCCCCcc
Q 003899 578 PAGLHNLRHLQKIWISKCPNLESFPEEG-LPSAKLTELMIWRCENLKALPNSMSSLLRLGIIGCPSLESFPEDGFPTNLQ 656 (788)
Q Consensus 578 ~~~~~~l~~L~~L~l~~c~~l~~~~~~~-~~~~~L~~L~l~~c~~l~~l~~~~~~L~~L~l~~c~~l~~~~~~~~~~~L~ 656 (788)
.+.++++|++|++++|+.++.++... ..+++|++|++++|. ++.+|. ....++|+
T Consensus 75 --~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~-l~~lp~---------------------~~~l~~L~ 130 (239)
T 2xwt_C 75 --SFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTG-LKMFPD---------------------LTKVYSTD 130 (239)
T ss_dssp --TEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEEC-CCSCCC---------------------CTTCCBCC
T ss_pred --HcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCC-Cccccc---------------------cccccccc
Confidence 34456777777777755666666433 346666666666653 222321 11112333
Q ss_pred ---EEEEeccCCCCcccccccCCCCCcc-EEEEcCCCCCcccCCC---CCCCCCeEecCCCCCcccchhh-cCCC-CCCC
Q 003899 657 ---SLEVRDLKITKPLLEWGLNRFTSLR-NLSIGGGYPDLLSSPP---FPASLTELWISDMPDLECLSSI-SENL-TSLE 727 (788)
Q Consensus 657 ---~L~l~~~~~~~~~~~~~~~~l~~L~-~L~l~~~~~~~~~~~~---~~~~L~~L~l~~~~~l~~l~~~-~~~l-~~L~ 727 (788)
.|++++|+.++.+++..|.++++|+ +|++++ +.+..+|. ..++|+.|++++|..++.+|.. +..+ ++|+
T Consensus 131 ~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~--n~l~~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~ 208 (239)
T 2xwt_C 131 IFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYN--NGFTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPS 208 (239)
T ss_dssp SEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCS--CCCCEECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCS
T ss_pred cccEEECCCCcchhhcCcccccchhcceeEEEcCC--CCCcccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCc
Confidence 7777776556666666678888888 888887 55667766 3367888999886568888755 7888 9999
Q ss_pred ceecccCCCCcccCCCCCcCCcceEeecCChhH
Q 003899 728 FLYLIDCPKLKYFPEQGLPKSLSRLSIHNCPLI 760 (788)
Q Consensus 728 ~L~l~~c~~l~~l~~~~~~~~L~~L~i~~c~~l 760 (788)
.|+++++ .++.+|.. .+++|+.|++.+++.+
T Consensus 209 ~L~l~~N-~l~~l~~~-~~~~L~~L~l~~~~~l 239 (239)
T 2xwt_C 209 LLDVSQT-SVTALPSK-GLEHLKELIARNTWTL 239 (239)
T ss_dssp EEECTTC-CCCCCCCT-TCTTCSEEECTTC---
T ss_pred EEECCCC-ccccCChh-HhccCceeeccCccCC
Confidence 9999998 78888886 4578999999998754
No 74
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.68 E-value=2.4e-16 Score=159.49 Aligned_cols=197 Identities=18% Similarity=0.157 Sum_probs=102.0
Q ss_pred CeeEEEccCCcCccccc-ccccCCCCCceeeccCCcccccc-hhhhccccCcEEEccCccchhhch-hhhhcccCCceEe
Q 003899 119 RLRVFSLHGYSNIIELP-NEIENLKHLRFLNLSRTSIQILP-ESINSLYNLNTILLEDCYQLKKLC-NDMGNLKKLRHLK 195 (788)
Q Consensus 119 ~Lr~L~L~~~~~l~~lp-~~~~~l~~L~~L~L~~~~i~~lp-~~i~~L~~L~~L~L~~~~~l~~lp-~~i~~L~~L~~L~ 195 (788)
+|++|++++| .+..++ ..|.++++|++|++++|.+..++ ..+..+++|++|++++| .+..+| ..+.++++|++|+
T Consensus 29 ~l~~L~ls~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~ 106 (276)
T 2z62_A 29 STKNLDLSFN-PLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN-PIQSLALGAFSGLSSLQKLV 106 (276)
T ss_dssp TCCEEECTTC-CCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTC-CCCEECTTTTTTCTTCCEEE
T ss_pred CccEEECCCC-cccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCC-ccCccChhhhcCCccccEEE
Confidence 4555555555 454444 24455555555555555555443 24455555555555555 333333 2345555555555
Q ss_pred cCCCcCcccCCc-cCcCCCCcceeCceEeCCCCCCCcccccccccCCceeEEeccCCCCCchhhhhcccCCCcCCceEEE
Q 003899 196 SSNVDSLEEMPK-GFGKLTCLLTLGTFVVGKDGGSGLRELKSLTHLQGTLQISKLENVKDVGDACEAQLNSKENLQALLL 274 (788)
Q Consensus 196 l~~~~~l~~~p~-~i~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l 274 (788)
+++|. +..++. .++.+++|++|++.++....... ...+..+++|+.|++
T Consensus 107 l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l-----------------------------~~~~~~l~~L~~L~L 156 (276)
T 2z62_A 107 AVETN-LASLENFPIGHLKTLKELNVAHNLIQSFKL-----------------------------PEYFSNLTNLEHLDL 156 (276)
T ss_dssp CTTSC-CCCSTTCCCTTCTTCCEEECCSSCCCCCCC-----------------------------CGGGGGCTTCCEEEC
T ss_pred CCCCC-ccccCchhcccCCCCCEEECcCCccceecC-----------------------------chhhccCCCCCEEEC
Confidence 55554 333333 35555555555543332111000 011222334444444
Q ss_pred EeecCcccCccchhhhhhhcccCccccccc----eEEEEeeCCCCCCcccCCCCCCCeeEEEECCCCCCCCCC--CCCCC
Q 003899 275 KWSTRDVQNLDQCEFETHVLSVLKPHQDVQ----ELTITGYGGTKFPIWLGDSSFSKLARLELCRCTSTSLPS--VGQLP 348 (788)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~----~L~l~~~~~~~~p~~~~~~~~~~L~~L~L~~~~~~~l~~--l~~l~ 348 (788)
+++.. .......+..+.+|+ .|+++++....+|.... ...+|+.|++++|.+..+|. ++.++
T Consensus 157 s~N~l----------~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~--~~~~L~~L~L~~n~l~~~~~~~~~~l~ 224 (276)
T 2z62_A 157 SSNKI----------QSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAF--KEIRLKELALDTNQLKSVPDGIFDRLT 224 (276)
T ss_dssp CSSCC----------CEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSS--CSCCEEEEECCSSCCSCCCTTTTTTCC
T ss_pred CCCCC----------CcCCHHHhhhhhhccccceeeecCCCcccccCcccc--CCCcccEEECCCCceeecCHhHhcccc
Confidence 44332 111112222333333 67777777766665544 34589999999999855554 68899
Q ss_pred CccEEEecCCC
Q 003899 349 FLMELDISGMD 359 (788)
Q Consensus 349 ~L~~L~l~~~~ 359 (788)
+|+.|++++|+
T Consensus 225 ~L~~L~l~~N~ 235 (276)
T 2z62_A 225 SLQKIWLHTNP 235 (276)
T ss_dssp SCCEEECCSSC
T ss_pred cccEEEccCCc
Confidence 99999999886
No 75
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.66 E-value=1.5e-15 Score=159.16 Aligned_cols=216 Identities=20% Similarity=0.195 Sum_probs=149.5
Q ss_pred CCccEEEEecCcccchhhhcccccccCCCCCCeEEcccCCCccccccCccccccCCCCcccccceEE-EEEecCccCccc
Q 003899 498 PKLENLVIVEVREQAYLWQSETRLLQDIRSLNRLHISRCPRLLSLVTDEEHDQQQPESPYRLRFLEL-KIFIYDLENLQS 576 (788)
Q Consensus 498 ~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~l~~L~L-~L~l~~~~~l~~ 576 (788)
+++++|++++|.+.... +..|.++++|++|++++|...+.++.. .|.+++. + ++.+.+++.++.
T Consensus 30 ~~l~~L~Ls~N~i~~i~----~~~f~~l~~L~~L~Ls~N~i~~~i~~~-----~f~~L~~------l~~~l~~~~N~l~~ 94 (350)
T 4ay9_X 30 RNAIELRFVLTKLRVIQ----KGAFSGFGDLEKIEISQNDVLEVIEAD-----VFSNLPK------LHEIRIEKANNLLY 94 (350)
T ss_dssp TTCSEEEEESCCCSEEC----TTSSTTCTTCCEEEEECCTTCCEECTT-----SBCSCTT------CCEEEEEEETTCCE
T ss_pred CCCCEEEccCCcCCCcC----HHHHcCCCCCCEEECcCCCCCCccChh-----Hhhcchh------hhhhhcccCCcccc
Confidence 45555666655544432 344555666666666655444444432 2222111 3 444444455555
Q ss_pred c-cccccCCCCcceEEEecCCCCcccCCC-CCCCCcccEEEecccccccccccc-c----CccceEeccCCCCCCCCCCC
Q 003899 577 L-PAGLHNLRHLQKIWISKCPNLESFPEE-GLPSAKLTELMIWRCENLKALPNS-M----SSLLRLGIIGCPSLESFPED 649 (788)
Q Consensus 577 l-~~~~~~l~~L~~L~l~~c~~l~~~~~~-~~~~~~L~~L~l~~c~~l~~l~~~-~----~~L~~L~l~~c~~l~~~~~~ 649 (788)
+ |..+..+++|++|++++| .++.+|.. .....++..+++.++..+..++.. + ..++.|++++ +.++.++..
T Consensus 95 l~~~~f~~l~~L~~L~l~~n-~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~-N~i~~i~~~ 172 (350)
T 4ay9_X 95 INPEAFQNLPNLQYLLISNT-GIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNK-NGIQEIHNS 172 (350)
T ss_dssp ECTTSBCCCTTCCEEEEEEE-CCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCS-SCCCEECTT
T ss_pred cCchhhhhcccccccccccc-ccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccc-ccccCCChh
Confidence 5 345677899999999985 56666543 344667888888888888777643 2 2677888887 467777776
Q ss_pred CCC-CCccEEEEeccCCCCcccccccCCCCCccEEEEcCCCCCcccCCC-CCCCCCeEecCCCCCcccchhhcCCCCCCC
Q 003899 650 GFP-TNLQSLEVRDLKITKPLLEWGLNRFTSLRNLSIGGGYPDLLSSPP-FPASLTELWISDMPDLECLSSISENLTSLE 727 (788)
Q Consensus 650 ~~~-~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~-~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~ 727 (788)
.+. .+|+.|++.+++.++.++...|.++++|++|++++ +.+..+|. .+.+|+.|.+.+++.++.+| .+..+++|+
T Consensus 173 ~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~--N~l~~lp~~~~~~L~~L~~l~~~~l~~lP-~l~~l~~L~ 249 (350)
T 4ay9_X 173 AFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISR--TRIHSLPSYGLENLKKLRARSTYNLKKLP-TLEKLVALM 249 (350)
T ss_dssp SSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTT--SCCCCCCSSSCTTCCEEECTTCTTCCCCC-CTTTCCSCC
T ss_pred hccccchhHHhhccCCcccCCCHHHhccCcccchhhcCC--CCcCccChhhhccchHhhhccCCCcCcCC-CchhCcChh
Confidence 543 57899999888888888888889999999999998 67888888 78889999998888899988 577888898
Q ss_pred ceeccc
Q 003899 728 FLYLID 733 (788)
Q Consensus 728 ~L~l~~ 733 (788)
.+++.+
T Consensus 250 ~l~l~~ 255 (350)
T 4ay9_X 250 EASLTY 255 (350)
T ss_dssp EEECSC
T ss_pred hCcCCC
Confidence 888865
No 76
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.66 E-value=5.2e-16 Score=156.28 Aligned_cols=61 Identities=16% Similarity=0.150 Sum_probs=31.4
Q ss_pred ccccccceEEEEeeCCCCCCcccCCCCCCCeeEEEECCCCCCCCCC--CCCCCCccEEEecCCC
Q 003899 298 KPHQDVQELTITGYGGTKFPIWLGDSSFSKLARLELCRCTSTSLPS--VGQLPFLMELDISGMD 359 (788)
Q Consensus 298 ~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~L~~~~~~~l~~--l~~l~~L~~L~l~~~~ 359 (788)
..+++|+.|+++++....+|.... ..+++|+.|++++|.+..+|. +..+++|+.|++++|+
T Consensus 154 ~~l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 154 DKLTSLKELRLYNNQLKRVPEGAF-DKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENP 216 (270)
T ss_dssp TTCTTCCEEECCSSCCSCCCTTTT-TTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred cCCcccceeEecCCcCcEeChhHh-ccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCC
Confidence 334555555555555544443211 145566666666665533332 5555666666666554
No 77
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.65 E-value=4.2e-16 Score=157.03 Aligned_cols=100 Identities=27% Similarity=0.431 Sum_probs=63.0
Q ss_pred CCCCeeEEEccCCcCcccccccccCCCCCceeeccCCcccccchhhhccccCcEEEccCccchhhchhh-hhcccCCceE
Q 003899 116 NLPRLRVFSLHGYSNIIELPNEIENLKHLRFLNLSRTSIQILPESINSLYNLNTILLEDCYQLKKLCND-MGNLKKLRHL 194 (788)
Q Consensus 116 ~l~~Lr~L~L~~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~-i~~L~~L~~L 194 (788)
.+++|+.|++++| .+..++ .+..+++|++|++++|.+..++ .++.+++|++|++++| .+..+|.. ++.+++|++|
T Consensus 39 ~l~~L~~L~l~~~-~i~~~~-~l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L 114 (272)
T 3rfs_A 39 ELNSIDQIIANNS-DIKSVQ-GIQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGN-QLQSLPNGVFDKLTNLKEL 114 (272)
T ss_dssp HHTTCCEEECTTS-CCCCCT-TGGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEE
T ss_pred cccceeeeeeCCC-Cccccc-ccccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCC-ccCccChhHhcCCcCCCEE
Confidence 4556667777766 666553 4666777777777777766654 4666777777777776 55555544 5667777777
Q ss_pred ecCCCcCcccCCcc-CcCCCCcceeCc
Q 003899 195 KSSNVDSLEEMPKG-FGKLTCLLTLGT 220 (788)
Q Consensus 195 ~l~~~~~l~~~p~~-i~~l~~L~~L~~ 220 (788)
++++|. +..+|.. ++.+++|++|++
T Consensus 115 ~L~~n~-l~~~~~~~~~~l~~L~~L~L 140 (272)
T 3rfs_A 115 VLVENQ-LQSLPDGVFDKLTNLTYLNL 140 (272)
T ss_dssp ECTTSC-CCCCCTTTTTTCTTCCEEEC
T ss_pred ECCCCc-CCccCHHHhccCCCCCEEEC
Confidence 777766 5555443 555566665554
No 78
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.65 E-value=3e-16 Score=154.98 Aligned_cols=94 Identities=19% Similarity=0.249 Sum_probs=56.9
Q ss_pred CeeEEEccCCcCcccccc-cccCCCCCceeeccCCc-ccccch-hhhccccCcEEEccC-ccchhhchh-hhhcccCCce
Q 003899 119 RLRVFSLHGYSNIIELPN-EIENLKHLRFLNLSRTS-IQILPE-SINSLYNLNTILLED-CYQLKKLCN-DMGNLKKLRH 193 (788)
Q Consensus 119 ~Lr~L~L~~~~~l~~lp~-~~~~l~~L~~L~L~~~~-i~~lp~-~i~~L~~L~~L~L~~-~~~l~~lp~-~i~~L~~L~~ 193 (788)
+|++|++++| .++.+|. .|.++++|++|++++|. ++.+|. .+..+++|++|++++ | .+..+|. .+..+++|++
T Consensus 32 ~l~~L~l~~n-~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n-~l~~i~~~~f~~l~~L~~ 109 (239)
T 2xwt_C 32 STQTLKLIET-HLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTR-NLTYIDPDALKELPLLKF 109 (239)
T ss_dssp TCCEEEEESC-CCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEET-TCCEECTTSEECCTTCCE
T ss_pred cccEEEEeCC-cceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCC-CeeEcCHHHhCCCCCCCE
Confidence 5666666666 6666653 56666666666666665 666643 566666666666666 4 5555553 3566666666
Q ss_pred EecCCCcCcccCCccCcCCCCcc
Q 003899 194 LKSSNVDSLEEMPKGFGKLTCLL 216 (788)
Q Consensus 194 L~l~~~~~l~~~p~~i~~l~~L~ 216 (788)
|++++|. +..+|. ++.+++|+
T Consensus 110 L~l~~n~-l~~lp~-~~~l~~L~ 130 (239)
T 2xwt_C 110 LGIFNTG-LKMFPD-LTKVYSTD 130 (239)
T ss_dssp EEEEEEC-CCSCCC-CTTCCBCC
T ss_pred EeCCCCC-Cccccc-cccccccc
Confidence 6666666 544554 44444433
No 79
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.65 E-value=1.3e-16 Score=174.61 Aligned_cols=122 Identities=14% Similarity=0.132 Sum_probs=98.9
Q ss_pred CCCceeEEEeccCCccccchhhhhHHHHhCCCCCeeEEEccCCcCcccccccccCCCCCceeeccCCcccccchhhhccc
Q 003899 86 DVEHLRTFLPVNLSNYRINYLAWSVLQMLMNLPRLRVFSLHGYSNIIELPNEIENLKHLRFLNLSRTSIQILPESINSLY 165 (788)
Q Consensus 86 ~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~L~ 165 (788)
.+++|+.|.+.++. +....|..|..+++|++|+|++| .+...++ |+.+++|++|+|++|.|+.+|.. +
T Consensus 32 ~~~~L~~L~Ls~n~------l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~~~----~ 99 (487)
T 3oja_A 32 SAWNVKELDLSGNP------LSQISAADLAPFTKLELLNLSSN-VLYETLD-LESLSTLRTLDLNNNYVQELLVG----P 99 (487)
T ss_dssp TGGGCCEEECCSSC------CCCCCGGGGTTCTTCCEEECTTS-CCEEEEE-CTTCTTCCEEECCSSEEEEEEEC----T
T ss_pred cCCCccEEEeeCCc------CCCCCHHHHhCCCCCCEEEeeCC-CCCCCcc-cccCCCCCEEEecCCcCCCCCCC----C
Confidence 45589999988864 33333458999999999999999 8877654 99999999999999999988743 8
Q ss_pred cCcEEEccCccchhhchhhhhcccCCceEecCCCcCcccC-CccCcCCCCcceeCceEe
Q 003899 166 NLNTILLEDCYQLKKLCNDMGNLKKLRHLKSSNVDSLEEM-PKGFGKLTCLLTLGTFVV 223 (788)
Q Consensus 166 ~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~-p~~i~~l~~L~~L~~~~~ 223 (788)
+|++|++++| .+..+|. ..+++|++|++++|. +..+ |..++.+++|++|++.++
T Consensus 100 ~L~~L~L~~N-~l~~~~~--~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~Ls~N 154 (487)
T 3oja_A 100 SIETLHAANN-NISRVSC--SRGQGKKNIYLANNK-ITMLRDLDEGCRSRVQYLDLKLN 154 (487)
T ss_dssp TCCEEECCSS-CCCCEEE--CCCSSCEEEECCSSC-CCSGGGBCGGGGSSEEEEECTTS
T ss_pred CcCEEECcCC-cCCCCCc--cccCCCCEEECCCCC-CCCCCchhhcCCCCCCEEECCCC
Confidence 9999999999 7777665 357899999999999 5554 556888999999987544
No 80
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.64 E-value=2.2e-17 Score=170.12 Aligned_cols=101 Identities=17% Similarity=0.202 Sum_probs=70.7
Q ss_pred eeEEEccCCcCccc--cccccc-------CCCCCceeeccCCccc-ccchhh--hccccCcEEEccCccchhhchhhhhc
Q 003899 120 LRVFSLHGYSNIIE--LPNEIE-------NLKHLRFLNLSRTSIQ-ILPESI--NSLYNLNTILLEDCYQLKKLCNDMGN 187 (788)
Q Consensus 120 Lr~L~L~~~~~l~~--lp~~~~-------~l~~L~~L~L~~~~i~-~lp~~i--~~L~~L~~L~L~~~~~l~~lp~~i~~ 187 (788)
|++|++++| .+.. +|..+. ++.+|++|+|++|.++ .+|..+ +.+++|++|++++| .+..+|..++.
T Consensus 65 L~~L~L~~n-~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~ 142 (312)
T 1wwl_A 65 IKSLSLKRL-TVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNV-SWATRDAWLAE 142 (312)
T ss_dssp HHHCCCCEE-EEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESC-BCSSSSSHHHH
T ss_pred Hhhcccccc-cccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCC-CCcchhHHHHH
Confidence 777777777 5543 444444 6778888888888777 567665 77888888888877 56666766776
Q ss_pred c-----cCCceEecCCCcCcccCC-ccCcCCCCcceeCceEe
Q 003899 188 L-----KKLRHLKSSNVDSLEEMP-KGFGKLTCLLTLGTFVV 223 (788)
Q Consensus 188 L-----~~L~~L~l~~~~~l~~~p-~~i~~l~~L~~L~~~~~ 223 (788)
+ ++|++|++++|. +..++ ..++.+++|++|++.++
T Consensus 143 l~~~~~~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~Ls~N 183 (312)
T 1wwl_A 143 LQQWLKPGLKVLSIAQAH-SLNFSCEQVRVFPALSTLDLSDN 183 (312)
T ss_dssp HHTTCCTTCCEEEEESCS-CCCCCTTTCCCCSSCCEEECCSC
T ss_pred HHHhhcCCCcEEEeeCCC-CccchHHHhccCCCCCEEECCCC
Confidence 6 778888888877 55555 55777777777776443
No 81
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.63 E-value=1.9e-15 Score=158.44 Aligned_cols=101 Identities=21% Similarity=0.302 Sum_probs=64.0
Q ss_pred eEEEccCCcCcccccccccCCCCCceeeccCCcccccch-hhhccccCcEEEccCccchhhchhh-hhcccCCceEe-cC
Q 003899 121 RVFSLHGYSNIIELPNEIENLKHLRFLNLSRTSIQILPE-SINSLYNLNTILLEDCYQLKKLCND-MGNLKKLRHLK-SS 197 (788)
Q Consensus 121 r~L~L~~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~~lp~~-i~~L~~L~~L~-l~ 197 (788)
++++.+++ +++++|..+ ..++++|+|++|+|+.+|. .|.+|++|++|+|++|...+.+|.+ |.++++|+++. +.
T Consensus 12 ~~v~C~~~-~Lt~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~ 88 (350)
T 4ay9_X 12 RVFLCQES-KVTEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88 (350)
T ss_dssp TEEEEEST-TCCSCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred CEEEecCC-CCCccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence 45566666 677777655 2467777777777777764 4677777777777777334556554 56677766543 33
Q ss_pred CCcCcccCCc-cCcCCCCcceeCceEeCC
Q 003899 198 NVDSLEEMPK-GFGKLTCLLTLGTFVVGK 225 (788)
Q Consensus 198 ~~~~l~~~p~-~i~~l~~L~~L~~~~~~~ 225 (788)
+|. +..+|. .+..+++|++|++.++..
T Consensus 89 ~N~-l~~l~~~~f~~l~~L~~L~l~~n~l 116 (350)
T 4ay9_X 89 ANN-LLYINPEAFQNLPNLQYLLISNTGI 116 (350)
T ss_dssp ETT-CCEECTTSBCCCTTCCEEEEEEECC
T ss_pred CCc-ccccCchhhhhcccccccccccccc
Confidence 444 666643 367777777777666543
No 82
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.63 E-value=4.8e-16 Score=157.79 Aligned_cols=198 Identities=20% Similarity=0.128 Sum_probs=145.6
Q ss_pred ccCCCceeEEEeccCCccccchhhhhHHHHhCCCCCeeEEEccCCcCccccc-ccccCCCCCceeeccCCcccccchhhh
Q 003899 84 VCDVEHLRTFLPVNLSNYRINYLAWSVLQMLMNLPRLRVFSLHGYSNIIELP-NEIENLKHLRFLNLSRTSIQILPESIN 162 (788)
Q Consensus 84 ~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~l~~lp-~~~~~l~~L~~L~L~~~~i~~lp~~i~ 162 (788)
+.++++++.+.+.+.. + ..+|..+ .+.+++|++++| .+..++ ..|.++++|++|+|++|.|+.+|.. +
T Consensus 6 ~~~l~~l~~l~~~~~~------l-~~ip~~~--~~~l~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~ 74 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRN------L-TALPPDL--PKDTTILHLSEN-LLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-G 74 (290)
T ss_dssp EECSTTCCEEECTTSC------C-SSCCSCC--CTTCCEEECTTS-CCSEEEGGGGTTCTTCCEEECTTSCCCEEECC-S
T ss_pred ccccCCccEEECCCCC------C-CcCCCCC--CCCCCEEEcCCC-cCCccCHHHhhcCCCCCEEECCCCccCcccCC-C
Confidence 4567778888776653 1 2344322 268899999999 788774 6789999999999999999988764 7
Q ss_pred ccccCcEEEccCccchhhchhhhhcccCCceEecCCCcCcccCCc-cCcCCCCcceeCceEeCCCCCCCcccccccccCC
Q 003899 163 SLYNLNTILLEDCYQLKKLCNDMGNLKKLRHLKSSNVDSLEEMPK-GFGKLTCLLTLGTFVVGKDGGSGLRELKSLTHLQ 241 (788)
Q Consensus 163 ~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~-~i~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~ 241 (788)
.+++|++|++++| .+..+|..+..+++|++|++++|. +..+|. .++.+++|++|++.++.... +
T Consensus 75 ~l~~L~~L~Ls~N-~l~~l~~~~~~l~~L~~L~l~~N~-l~~l~~~~~~~l~~L~~L~L~~N~l~~------------~- 139 (290)
T 1p9a_G 75 TLPVLGTLDLSHN-QLQSLPLLGQTLPALTVLDVSFNR-LTSLPLGALRGLGELQELYLKGNELKT------------L- 139 (290)
T ss_dssp CCTTCCEEECCSS-CCSSCCCCTTTCTTCCEEECCSSC-CCCCCSSTTTTCTTCCEEECTTSCCCC------------C-
T ss_pred CCCcCCEEECCCC-cCCcCchhhccCCCCCEEECCCCc-CcccCHHHHcCCCCCCEEECCCCCCCc------------c-
Confidence 8999999999998 788899888999999999999998 777774 48888888888764432110 0
Q ss_pred ceeEEeccCCCCCchhhhhcccCCCcCCceEEEEeecCcccCccchhhhhhhcccCccccccceEEEEeeCCCCCCcccC
Q 003899 242 GTLQISKLENVKDVGDACEAQLNSKENLQALLLKWSTRDVQNLDQCEFETHVLSVLKPHQDVQELTITGYGGTKFPIWLG 321 (788)
Q Consensus 242 ~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~ 321 (788)
....+..+++|+.|++++|....+|....
T Consensus 140 ---------------------------------------------------~~~~~~~l~~L~~L~L~~N~l~~l~~~~~ 168 (290)
T 1p9a_G 140 ---------------------------------------------------PPGLLTPTPKLEKLSLANNNLTELPAGLL 168 (290)
T ss_dssp ---------------------------------------------------CTTTTTTCTTCCEEECTTSCCSCCCTTTT
T ss_pred ---------------------------------------------------ChhhcccccCCCEEECCCCcCCccCHHHh
Confidence 01123344566667777776666665432
Q ss_pred CCCCCCeeEEEECCCCCCCCCC-CCCCCCccEEEecCCC
Q 003899 322 DSSFSKLARLELCRCTSTSLPS-VGQLPFLMELDISGMD 359 (788)
Q Consensus 322 ~~~~~~L~~L~L~~~~~~~l~~-l~~l~~L~~L~l~~~~ 359 (788)
..+++|+.|++++|.+..+|. +...++|+.|++++|+
T Consensus 169 -~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np 206 (290)
T 1p9a_G 169 -NGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNP 206 (290)
T ss_dssp -TTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCC
T ss_pred -cCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCCC
Confidence 257888888888888866664 6777889999998886
No 83
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.61 E-value=2.3e-15 Score=152.32 Aligned_cols=97 Identities=19% Similarity=0.307 Sum_probs=79.7
Q ss_pred EEEccCCcCcccccccccCCCCCceeeccCCcccccch-hhhccccCcEEEccCccchhhchh-hhhcccCCceEecCCC
Q 003899 122 VFSLHGYSNIIELPNEIENLKHLRFLNLSRTSIQILPE-SINSLYNLNTILLEDCYQLKKLCN-DMGNLKKLRHLKSSNV 199 (788)
Q Consensus 122 ~L~L~~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~~lp~-~i~~L~~L~~L~l~~~ 199 (788)
+.+..+. .+..+|..+. .+|++|++++|.++.+|. .+..+++|++|++++| .+..+|. .+..+++|++|++++|
T Consensus 11 ~~~c~~~-~l~~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~n 86 (276)
T 2z62_A 11 TYQCMEL-NFYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGN 86 (276)
T ss_dssp EEECTTS-CCSSCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTC-CCCEECTTTTTTCTTCCEEECTTC
T ss_pred eEEecCC-CccccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCC-cCCccCHHHccCCcCCCEEECCCC
Confidence 3455565 7888887664 589999999999998864 8999999999999999 7777765 5899999999999999
Q ss_pred cCcccCC-ccCcCCCCcceeCceEe
Q 003899 200 DSLEEMP-KGFGKLTCLLTLGTFVV 223 (788)
Q Consensus 200 ~~l~~~p-~~i~~l~~L~~L~~~~~ 223 (788)
. +..++ ..++++++|++|++.++
T Consensus 87 ~-l~~~~~~~~~~l~~L~~L~l~~n 110 (276)
T 2z62_A 87 P-IQSLALGAFSGLSSLQKLVAVET 110 (276)
T ss_dssp C-CCEECTTTTTTCTTCCEEECTTS
T ss_pred c-cCccChhhhcCCccccEEECCCC
Confidence 9 66665 55888999998887443
No 84
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.60 E-value=2.5e-15 Score=154.64 Aligned_cols=226 Identities=17% Similarity=0.140 Sum_probs=146.4
Q ss_pred CCCceeEEEeccCCccccchhhhhHHH--HhCCCCCeeEEEccCCcCcc-cccccc--cCCCCCceeeccCCccccc-c-
Q 003899 86 DVEHLRTFLPVNLSNYRINYLAWSVLQ--MLMNLPRLRVFSLHGYSNII-ELPNEI--ENLKHLRFLNLSRTSIQIL-P- 158 (788)
Q Consensus 86 ~~~~Lr~L~~~~~~~~~~~~~~~~~~~--~~~~l~~Lr~L~L~~~~~l~-~lp~~~--~~l~~L~~L~L~~~~i~~l-p- 158 (788)
...+++.+.+.+..- . ...+.. .+..+++|++|++++| .+. ..|..+ ..+++|++|+|++|.+... |
T Consensus 62 ~~~~l~~l~l~~~~~---~--~~~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~ 135 (310)
T 4glp_A 62 KALRVRRLTVGAAQV---P--AQLLVGALRVLAYSRLKELTLEDL-KITGTMPPLPLEATGLALSSLRLRNVSWATGRSW 135 (310)
T ss_dssp SSCCCCEEEECSCCC---B--HHHHHHHHHHHHHSCCCEEEEESC-CCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSS
T ss_pred hhcceeEEEEeCCcC---C--HHHHHHHHHhcccCceeEEEeeCC-EeccchhhhhhhccCCCCCEEEeecccccchhhh
Confidence 344567776665431 1 111221 2334567999999999 665 456777 8999999999999999853 3
Q ss_pred ---hhhhccccCcEEEccCccchhhch-hhhhcccCCceEecCCCcCccc--CC--ccCcCCCCcceeCceEeCCCCCCC
Q 003899 159 ---ESINSLYNLNTILLEDCYQLKKLC-NDMGNLKKLRHLKSSNVDSLEE--MP--KGFGKLTCLLTLGTFVVGKDGGSG 230 (788)
Q Consensus 159 ---~~i~~L~~L~~L~L~~~~~l~~lp-~~i~~L~~L~~L~l~~~~~l~~--~p--~~i~~l~~L~~L~~~~~~~~~~~~ 230 (788)
..+..+++|++|++++| .+..+| ..++.+++|++|++++|..... ++ ..++.+++|++|++.++....
T Consensus 136 ~~~~~~~~~~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~--- 211 (310)
T 4glp_A 136 LAELQQWLKPGLKVLSIAQA-HSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET--- 211 (310)
T ss_dssp HHHHHTTBCSCCCEEEEECC-SSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC---
T ss_pred hHHHHhhhccCCCEEEeeCC-CcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc---
Confidence 34567999999999999 566555 5689999999999999983321 33 235788899999875543211
Q ss_pred cccccccccCCceeEEeccCCCCCchhhhhcccCCCcCCceEEEEeecCcccCccchhhhhhhcccCcc---ccccceEE
Q 003899 231 LRELKSLTHLQGTLQISKLENVKDVGDACEAQLNSKENLQALLLKWSTRDVQNLDQCEFETHVLSVLKP---HQDVQELT 307 (788)
Q Consensus 231 ~~~l~~L~~L~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~---~~~L~~L~ 307 (788)
........+..+++|+.|+++++.. ....+..+.. +++|+.|+
T Consensus 212 ------------------------l~~~~~~l~~~l~~L~~L~Ls~N~l----------~~~~p~~~~~~~~~~~L~~L~ 257 (310)
T 4glp_A 212 ------------------------PTGVCAALAAAGVQPHSLDLSHNSL----------RATVNPSAPRCMWSSALNSLN 257 (310)
T ss_dssp ------------------------HHHHHHHHHHHTCCCSSEECTTSCC----------CCCCCSCCSSCCCCTTCCCEE
T ss_pred ------------------------hHHHHHHHHhcCCCCCEEECCCCCC----------CccchhhHHhccCcCcCCEEE
Confidence 0000001123345666777766654 1122222222 36777777
Q ss_pred EEeeCCCCCCcccCCCCCCCeeEEEECCCCCCCCCCCCCCCCccEEEecCCC
Q 003899 308 ITGYGGTKFPIWLGDSSFSKLARLELCRCTSTSLPSVGQLPFLMELDISGMD 359 (788)
Q Consensus 308 l~~~~~~~~p~~~~~~~~~~L~~L~L~~~~~~~l~~l~~l~~L~~L~l~~~~ 359 (788)
+++|....+|.++ +++|+.|++++|.+..+|.+..+++|+.|++++|+
T Consensus 258 Ls~N~l~~lp~~~----~~~L~~L~Ls~N~l~~~~~~~~l~~L~~L~L~~N~ 305 (310)
T 4glp_A 258 LSFAGLEQVPKGL----PAKLRVLDLSSNRLNRAPQPDELPEVDNLTLDGNP 305 (310)
T ss_dssp CCSSCCCSCCSCC----CSCCSCEECCSCCCCSCCCTTSCCCCSCEECSSTT
T ss_pred CCCCCCCchhhhh----cCCCCEEECCCCcCCCCchhhhCCCccEEECcCCC
Confidence 7777777776655 26777777777777665666677777777777764
No 85
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.59 E-value=1.3e-16 Score=166.72 Aligned_cols=103 Identities=16% Similarity=0.130 Sum_probs=68.1
Q ss_pred CCeeEEEccCCcCcccccccccCCCCCceeeccCCcccc--cchhhhccccCcEEEccCccchhhchhhhhcccCCceEe
Q 003899 118 PRLRVFSLHGYSNIIELPNEIENLKHLRFLNLSRTSIQI--LPESINSLYNLNTILLEDCYQLKKLCNDMGNLKKLRHLK 195 (788)
Q Consensus 118 ~~Lr~L~L~~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~--lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~ 195 (788)
+.+++|++++| .+...+..+.++++|++|++++|.+.. +|..+..+++|++|++++|......|..++.+++|++|+
T Consensus 70 ~~l~~L~l~~n-~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~ 148 (336)
T 2ast_B 70 QGVIAFRCPRS-FMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLN 148 (336)
T ss_dssp TTCSEEECTTC-EECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEE
T ss_pred ccceEEEcCCc-cccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEE
Confidence 56777777777 666655556667777777777777663 666677777777777777743345666677777777777
Q ss_pred cCCCcCccc--CCccCcCCCCcceeCce
Q 003899 196 SSNVDSLEE--MPKGFGKLTCLLTLGTF 221 (788)
Q Consensus 196 l~~~~~l~~--~p~~i~~l~~L~~L~~~ 221 (788)
+++|..+.. +|..++.+++|++|++.
T Consensus 149 L~~~~~l~~~~l~~~~~~~~~L~~L~l~ 176 (336)
T 2ast_B 149 LSGCSGFSEFALQTLLSSCSRLDELNLS 176 (336)
T ss_dssp CTTCBSCCHHHHHHHHHHCTTCCEEECC
T ss_pred CCCCCCCCHHHHHHHHhcCCCCCEEcCC
Confidence 777732432 44445556666666553
No 86
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.59 E-value=1.4e-15 Score=156.09 Aligned_cols=196 Identities=19% Similarity=0.191 Sum_probs=122.4
Q ss_pred cCCCceeEEEeccCCccccchhhhhHHHHhCCCCCeeEEEccCCcCcccccccccCCCCCceeeccCCcccccchhhhcc
Q 003899 85 CDVEHLRTFLPVNLSNYRINYLAWSVLQMLMNLPRLRVFSLHGYSNIIELPNEIENLKHLRFLNLSRTSIQILPESINSL 164 (788)
Q Consensus 85 ~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~L 164 (788)
.++++|+.|.+.+..- ..++ .+..+++|++|++++| .+..++. +..+++|++|++++|.+..+| .+..+
T Consensus 38 ~~l~~L~~L~l~~~~i-------~~l~-~~~~l~~L~~L~L~~n-~i~~~~~-~~~l~~L~~L~L~~n~l~~~~-~~~~l 106 (308)
T 1h6u_A 38 ADLDGITTLSAFGTGV-------TTIE-GVQYLNNLIGLELKDN-QITDLAP-LKNLTKITELELSGNPLKNVS-AIAGL 106 (308)
T ss_dssp HHHHTCCEEECTTSCC-------CCCT-TGGGCTTCCEEECCSS-CCCCCGG-GTTCCSCCEEECCSCCCSCCG-GGTTC
T ss_pred HHcCCcCEEEeeCCCc-------cCch-hhhccCCCCEEEccCC-cCCCChh-HccCCCCCEEEccCCcCCCch-hhcCC
Confidence 3456677776665431 1222 3666777777777777 7777765 777777777777777777765 47777
Q ss_pred ccCcEEEccCccchhhchhhhhcccCCceEecCCCcCcccCCccCcCCCCcceeCceEeCCCCCCCcccccccccCCcee
Q 003899 165 YNLNTILLEDCYQLKKLCNDMGNLKKLRHLKSSNVDSLEEMPKGFGKLTCLLTLGTFVVGKDGGSGLRELKSLTHLQGTL 244 (788)
Q Consensus 165 ~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l 244 (788)
++|++|++++| .+..+|. +..+++|++|++++|. +..++. ++.+++|++|++.++...... .
T Consensus 107 ~~L~~L~l~~n-~l~~~~~-l~~l~~L~~L~l~~n~-l~~~~~-l~~l~~L~~L~l~~n~l~~~~---~----------- 168 (308)
T 1h6u_A 107 QSIKTLDLTST-QITDVTP-LAGLSNLQVLYLDLNQ-ITNISP-LAGLTNLQYLSIGNAQVSDLT---P----------- 168 (308)
T ss_dssp TTCCEEECTTS-CCCCCGG-GTTCTTCCEEECCSSC-CCCCGG-GGGCTTCCEEECCSSCCCCCG---G-----------
T ss_pred CCCCEEECCCC-CCCCchh-hcCCCCCCEEECCCCc-cCcCcc-ccCCCCccEEEccCCcCCCCh---h-----------
Confidence 77777777777 6666664 7777777777777776 666554 677777777776444322100 0
Q ss_pred EEeccCCCCCchhhhhcccCCCcCCceEEEEeecCcccCccchhhhhhhcccCccccccceEEEEeeCCCCCCcccCCCC
Q 003899 245 QISKLENVKDVGDACEAQLNSKENLQALLLKWSTRDVQNLDQCEFETHVLSVLKPHQDVQELTITGYGGTKFPIWLGDSS 324 (788)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~ 324 (788)
+..+++|+.|+++.+.. . ....+..+++|+.|++++|....++. +. .
T Consensus 169 ------------------l~~l~~L~~L~l~~n~l----------~--~~~~l~~l~~L~~L~L~~N~l~~~~~-l~--~ 215 (308)
T 1h6u_A 169 ------------------LANLSKLTTLKADDNKI----------S--DISPLASLPNLIEVHLKNNQISDVSP-LA--N 215 (308)
T ss_dssp ------------------GTTCTTCCEEECCSSCC----------C--CCGGGGGCTTCCEEECTTSCCCBCGG-GT--T
T ss_pred ------------------hcCCCCCCEEECCCCcc----------C--cChhhcCCCCCCEEEccCCccCcccc-cc--C
Confidence 23334555555555443 0 01114556677777777776666653 32 5
Q ss_pred CCCeeEEEECCCCCCCCC
Q 003899 325 FSKLARLELCRCTSTSLP 342 (788)
Q Consensus 325 ~~~L~~L~L~~~~~~~l~ 342 (788)
+++|+.|++++|.+...|
T Consensus 216 l~~L~~L~l~~N~i~~~~ 233 (308)
T 1h6u_A 216 TSNLFIVTLTNQTITNQP 233 (308)
T ss_dssp CTTCCEEEEEEEEEECCC
T ss_pred CCCCCEEEccCCeeecCC
Confidence 777777777777664333
No 87
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.58 E-value=1.4e-15 Score=153.33 Aligned_cols=128 Identities=28% Similarity=0.453 Sum_probs=99.7
Q ss_pred cccCCCceeEEEeccCCccccchhhhhHHHHhCCCCCeeEEEccCCcCcccccccccCCCCCceeeccCCcccccch-hh
Q 003899 83 SVCDVEHLRTFLPVNLSNYRINYLAWSVLQMLMNLPRLRVFSLHGYSNIIELPNEIENLKHLRFLNLSRTSIQILPE-SI 161 (788)
Q Consensus 83 ~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~-~i 161 (788)
...++++|+.|.+.++.- ..+ ..+..+++|++|++++| .+..++ .+..+++|++|++++|.++.+|. .+
T Consensus 36 ~~~~l~~L~~L~l~~~~i-------~~~-~~l~~l~~L~~L~l~~n-~l~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~ 105 (272)
T 3rfs_A 36 TQNELNSIDQIIANNSDI-------KSV-QGIQYLPNVRYLALGGN-KLHDIS-ALKELTNLTYLILTGNQLQSLPNGVF 105 (272)
T ss_dssp CHHHHTTCCEEECTTSCC-------CCC-TTGGGCTTCCEEECTTS-CCCCCG-GGTTCTTCCEEECTTSCCCCCCTTTT
T ss_pred ccccccceeeeeeCCCCc-------ccc-cccccCCCCcEEECCCC-CCCCch-hhcCCCCCCEEECCCCccCccChhHh
Confidence 345677888888777531 112 24778999999999999 788764 78899999999999999998864 47
Q ss_pred hccccCcEEEccCccchhhchhh-hhcccCCceEecCCCcCcccCCcc-CcCCCCcceeCceE
Q 003899 162 NSLYNLNTILLEDCYQLKKLCND-MGNLKKLRHLKSSNVDSLEEMPKG-FGKLTCLLTLGTFV 222 (788)
Q Consensus 162 ~~L~~L~~L~L~~~~~l~~lp~~-i~~L~~L~~L~l~~~~~l~~~p~~-i~~l~~L~~L~~~~ 222 (788)
+.+++|++|++++| .+..+|.. ++.+++|++|++++|. +..+|.. ++.+++|++|++.+
T Consensus 106 ~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~ 166 (272)
T 3rfs_A 106 DKLTNLKELVLVEN-QLQSLPDGVFDKLTNLTYLNLAHNQ-LQSLPKGVFDKLTNLTELDLSY 166 (272)
T ss_dssp TTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCS
T ss_pred cCCcCCCEEECCCC-cCCccCHHHhccCCCCCEEECCCCc-cCccCHHHhccCccCCEEECCC
Confidence 89999999999999 67777665 7899999999999998 6666654 56777777776533
No 88
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.58 E-value=1.2e-14 Score=146.24 Aligned_cols=193 Identities=19% Similarity=0.269 Sum_probs=137.8
Q ss_pred CeeEEEccCCcCcccccccccCCCCCceeeccCCcccccc-hhhhccccCcEEEccCccchhhchhh-hhcccCCceEec
Q 003899 119 RLRVFSLHGYSNIIELPNEIENLKHLRFLNLSRTSIQILP-ESINSLYNLNTILLEDCYQLKKLCND-MGNLKKLRHLKS 196 (788)
Q Consensus 119 ~Lr~L~L~~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp-~~i~~L~~L~~L~L~~~~~l~~lp~~-i~~L~~L~~L~l 196 (788)
..++++++++ .++.+|..+. .+|++|+|++|.+..+| ..+..+++|++|++++| .+..+|.. +..+++|++|++
T Consensus 17 ~~~~l~~~~~-~l~~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~i~~~~~~~l~~L~~L~l 92 (270)
T 2o6q_A 17 NKNSVDCSSK-KLTAIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDN-KLQTLPAGIFKELKNLETLWV 92 (270)
T ss_dssp TTTEEECTTS-CCSSCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSS-CCSCCCTTTTSSCTTCCEEEC
T ss_pred CCCEEEccCC-CCCccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCC-ccCeeChhhhcCCCCCCEEEC
Confidence 5788999999 8999997664 68999999999999886 47899999999999999 78888876 588999999999
Q ss_pred CCCcCcccCCcc-CcCCCCcceeCceEeCCCCCCCcccccccccCCceeEEeccCCCCCchhhhhcccCCCcCCceEEEE
Q 003899 197 SNVDSLEEMPKG-FGKLTCLLTLGTFVVGKDGGSGLRELKSLTHLQGTLQISKLENVKDVGDACEAQLNSKENLQALLLK 275 (788)
Q Consensus 197 ~~~~~l~~~p~~-i~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~ 275 (788)
++|. +..+|.. +..+++|++|++.++....
T Consensus 93 ~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~------------------------------------------------ 123 (270)
T 2o6q_A 93 TDNK-LQALPIGVFDQLVNLAELRLDRNQLKS------------------------------------------------ 123 (270)
T ss_dssp CSSC-CCCCCTTTTTTCSSCCEEECCSSCCCC------------------------------------------------
T ss_pred CCCc-CCcCCHhHcccccCCCEEECCCCccCe------------------------------------------------
Confidence 9998 7777754 6778888887764332100
Q ss_pred eecCcccCccchhhhhhhcccCccccccceEEEEeeCCCCCCcccCCCCCCCeeEEEECCCCCCCCCC--CCCCCCccEE
Q 003899 276 WSTRDVQNLDQCEFETHVLSVLKPHQDVQELTITGYGGTKFPIWLGDSSFSKLARLELCRCTSTSLPS--VGQLPFLMEL 353 (788)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~L~~~~~~~l~~--l~~l~~L~~L 353 (788)
.....+..+++|+.|+++++....+|.... ..+++|+.|++++|.+..++. +..+++|++|
T Consensus 124 ----------------~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 186 (270)
T 2o6q_A 124 ----------------LPPRVFDSLTKLTYLSLGYNELQSLPKGVF-DKLTSLKELRLYNNQLKRVPEGAFDKLTELKTL 186 (270)
T ss_dssp ----------------CCTTTTTTCTTCCEEECCSSCCCCCCTTTT-TTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEE
T ss_pred ----------------eCHHHhCcCcCCCEEECCCCcCCccCHhHc-cCCcccceeEecCCcCcEeChhHhccCCCcCEE
Confidence 011223445667777777776666665422 257888888888888855543 6778888888
Q ss_pred EecCCCCceEeCcccccCCCCCCCCCcceEeccc
Q 003899 354 DISGMDGVKSVGSEFYRRSCSVPFPSLETLSFSD 387 (788)
Q Consensus 354 ~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 387 (788)
++++|. +..++...+.. +++|+.|++.+
T Consensus 187 ~L~~N~-l~~~~~~~~~~-----l~~L~~L~l~~ 214 (270)
T 2o6q_A 187 KLDNNQ-LKRVPEGAFDS-----LEKLKMLQLQE 214 (270)
T ss_dssp ECCSSC-CSCCCTTTTTT-----CTTCCEEECCS
T ss_pred ECCCCc-CCcCCHHHhcc-----ccCCCEEEecC
Confidence 888874 33444332222 55566666555
No 89
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.57 E-value=4.3e-15 Score=150.97 Aligned_cols=169 Identities=20% Similarity=0.255 Sum_probs=117.0
Q ss_pred CCCCCeeEEEccCCcCcccccccccCCCCCceeeccCCcccccchhhhccccCcEEEccCccchhhchhhhhcccCCceE
Q 003899 115 MNLPRLRVFSLHGYSNIIELPNEIENLKHLRFLNLSRTSIQILPESINSLYNLNTILLEDCYQLKKLCNDMGNLKKLRHL 194 (788)
Q Consensus 115 ~~l~~Lr~L~L~~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L 194 (788)
..+++|++|++++| .+..+| .+..+++|++|++++|.++.++. +..+++|++|++++| .+..+|. ++.+++|++|
T Consensus 43 ~~l~~L~~L~l~~~-~i~~~~-~~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n-~l~~~~~-l~~l~~L~~L 117 (291)
T 1h6t_A 43 NELNSIDQIIANNS-DIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDEN-KVKDLSS-LKDLKKLKSL 117 (291)
T ss_dssp HHHHTCCEEECTTS-CCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSS-CCCCGGG-GTTCTTCCEE
T ss_pred hhcCcccEEEccCC-CcccCh-hHhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCC-cCCCChh-hccCCCCCEE
Confidence 34667888888888 777775 47788888888888888888766 888888888888888 6777664 8888888888
Q ss_pred ecCCCcCcccCCccCcCCCCcceeCceEeCCCCCCCcccccccccCCceeEEeccCCCCCchhhhhcccCCCcCCceEEE
Q 003899 195 KSSNVDSLEEMPKGFGKLTCLLTLGTFVVGKDGGSGLRELKSLTHLQGTLQISKLENVKDVGDACEAQLNSKENLQALLL 274 (788)
Q Consensus 195 ~l~~~~~l~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l 274 (788)
++++|. +..+ ..++.+++|++|++.++....
T Consensus 118 ~L~~n~-i~~~-~~l~~l~~L~~L~l~~n~l~~----------------------------------------------- 148 (291)
T 1h6t_A 118 SLEHNG-ISDI-NGLVHLPQLESLYLGNNKITD----------------------------------------------- 148 (291)
T ss_dssp ECTTSC-CCCC-GGGGGCTTCCEEECCSSCCCC-----------------------------------------------
T ss_pred ECCCCc-CCCC-hhhcCCCCCCEEEccCCcCCc-----------------------------------------------
Confidence 888887 5555 346666666666653332110
Q ss_pred EeecCcccCccchhhhhhhcccCccccccceEEEEeeCCCCCCcccCCCCCCCeeEEEECCCCCCCCCCCCCCCCccEEE
Q 003899 275 KWSTRDVQNLDQCEFETHVLSVLKPHQDVQELTITGYGGTKFPIWLGDSSFSKLARLELCRCTSTSLPSVGQLPFLMELD 354 (788)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~L~~~~~~~l~~l~~l~~L~~L~ 354 (788)
...+..+++|+.|++++|....++. +. .+++|+.|++++|.+..++.+..+++|+.|+
T Consensus 149 -------------------~~~l~~l~~L~~L~L~~N~l~~~~~-l~--~l~~L~~L~L~~N~i~~l~~l~~l~~L~~L~ 206 (291)
T 1h6t_A 149 -------------------ITVLSRLTKLDTLSLEDNQISDIVP-LA--GLTKLQNLYLSKNHISDLRALAGLKNLDVLE 206 (291)
T ss_dssp -------------------CGGGGGCTTCSEEECCSSCCCCCGG-GT--TCTTCCEEECCSSCCCBCGGGTTCTTCSEEE
T ss_pred -------------------chhhccCCCCCEEEccCCccccchh-hc--CCCccCEEECCCCcCCCChhhccCCCCCEEE
Confidence 0122334556666666665555554 32 5777888888888776667777788888888
Q ss_pred ecCCC
Q 003899 355 ISGMD 359 (788)
Q Consensus 355 l~~~~ 359 (788)
+++|+
T Consensus 207 l~~n~ 211 (291)
T 1h6t_A 207 LFSQE 211 (291)
T ss_dssp EEEEE
T ss_pred CcCCc
Confidence 87774
No 90
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.55 E-value=3.6e-14 Score=141.04 Aligned_cols=170 Identities=22% Similarity=0.262 Sum_probs=114.1
Q ss_pred CeeEEEccCCcCcccccccccCCCCCceeeccCCcccccc-hhhhccccCcEEEccCccchhhchhh-hhcccCCceEec
Q 003899 119 RLRVFSLHGYSNIIELPNEIENLKHLRFLNLSRTSIQILP-ESINSLYNLNTILLEDCYQLKKLCND-MGNLKKLRHLKS 196 (788)
Q Consensus 119 ~Lr~L~L~~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp-~~i~~L~~L~~L~L~~~~~l~~lp~~-i~~L~~L~~L~l 196 (788)
..++++++++ .+..+|..+. .+|++|+|++|.+..++ ..++.+++|++|++++| .+..++.. +..+++|++|++
T Consensus 15 ~~~~l~~~~~-~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L 90 (251)
T 3m19_A 15 GKKEVDCQGK-SLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYN-QLQTLSAGVFDDLTELGTLGL 90 (251)
T ss_dssp GGTEEECTTC-CCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEEC
T ss_pred CCeEEecCCC-CccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCC-cCCccCHhHhccCCcCCEEEC
Confidence 4577888888 8888887665 57888888888888774 56788888888888888 56555544 788888888888
Q ss_pred CCCcCcccCCcc-CcCCCCcceeCceEeCCCCCCCcccccccccCCceeEEeccCCCCCchhhhhcccCCCcCCceEEEE
Q 003899 197 SNVDSLEEMPKG-FGKLTCLLTLGTFVVGKDGGSGLRELKSLTHLQGTLQISKLENVKDVGDACEAQLNSKENLQALLLK 275 (788)
Q Consensus 197 ~~~~~l~~~p~~-i~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~ 275 (788)
++|. +..+|.. ++.+++|++|++.++....
T Consensus 91 ~~n~-l~~~~~~~~~~l~~L~~L~L~~N~l~~------------------------------------------------ 121 (251)
T 3m19_A 91 ANNQ-LASLPLGVFDHLTQLDKLYLGGNQLKS------------------------------------------------ 121 (251)
T ss_dssp TTSC-CCCCCTTTTTTCTTCCEEECCSSCCCC------------------------------------------------
T ss_pred CCCc-ccccChhHhcccCCCCEEEcCCCcCCC------------------------------------------------
Confidence 8887 6666644 5677777777664332110
Q ss_pred eecCcccCccchhhhhhhcccCccccccceEEEEeeCCCCCCc-ccCCCCCCCeeEEEECCCCCCCCC--CCCCCCCccE
Q 003899 276 WSTRDVQNLDQCEFETHVLSVLKPHQDVQELTITGYGGTKFPI-WLGDSSFSKLARLELCRCTSTSLP--SVGQLPFLME 352 (788)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~-~~~~~~~~~L~~L~L~~~~~~~l~--~l~~l~~L~~ 352 (788)
.....+..+++|+.|++++|....+|. .+. .+++|+.|++++|.+..++ .+..+++|++
T Consensus 122 ----------------~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~--~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 183 (251)
T 3m19_A 122 ----------------LPSGVFDRLTKLKELRLNTNQLQSIPAGAFD--KLTNLQTLSLSTNQLQSVPHGAFDRLGKLQT 183 (251)
T ss_dssp ----------------CCTTTTTTCTTCCEEECCSSCCCCCCTTTTT--TCTTCCEEECCSSCCSCCCTTTTTTCTTCCE
T ss_pred ----------------cChhHhccCCcccEEECcCCcCCccCHHHcC--cCcCCCEEECCCCcCCccCHHHHhCCCCCCE
Confidence 001112334556666666666555554 333 5677888888888774444 3677788888
Q ss_pred EEecCCC
Q 003899 353 LDISGMD 359 (788)
Q Consensus 353 L~l~~~~ 359 (788)
|++++|+
T Consensus 184 L~l~~N~ 190 (251)
T 3m19_A 184 ITLFGNQ 190 (251)
T ss_dssp EECCSCC
T ss_pred EEeeCCc
Confidence 8888775
No 91
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.54 E-value=2.6e-16 Score=167.70 Aligned_cols=131 Identities=15% Similarity=0.195 Sum_probs=83.5
Q ss_pred cccCCCceeEEEeccCCccccchhhhh----HHHHhCCCCCeeEEEccCCcCccc----ccccc-------cCCCCCcee
Q 003899 83 SVCDVEHLRTFLPVNLSNYRINYLAWS----VLQMLMNLPRLRVFSLHGYSNIIE----LPNEI-------ENLKHLRFL 147 (788)
Q Consensus 83 ~~~~~~~Lr~L~~~~~~~~~~~~~~~~----~~~~~~~l~~Lr~L~L~~~~~l~~----lp~~~-------~~l~~L~~L 147 (788)
.+..+++|+.|.+.++. +... ++..+..+++|++|+|++| .+.. +|..+ ..+++|++|
T Consensus 27 ~l~~~~~L~~L~L~~n~------i~~~~~~~l~~~l~~~~~L~~L~Ls~~-~~~~l~~~~~~~~~~l~~~l~~~~~L~~L 99 (386)
T 2ca6_A 27 VLLEDDSVKEIVLSGNT------IGTEAARWLSENIASKKDLEIAEFSDI-FTGRVKDEIPEALRLLLQALLKCPKLHTV 99 (386)
T ss_dssp HHHHCSCCCEEECTTSE------ECHHHHHHHHHTTTTCTTCCEEECCSC-CTTSCGGGSHHHHHHHHHHHTTCTTCCEE
T ss_pred HHhcCCCccEEECCCCC------CCHHHHHHHHHHHHhCCCccEEeCccc-ccCccccchhHHHHHHHHHHhhCCcccEE
Confidence 34566778888777653 2222 2334777888888888876 4432 33333 677888888
Q ss_pred eccCCcccc-----cchhhhccccCcEEEccCccchh-----hchhhhhcc---------cCCceEecCCCcCcc--cCC
Q 003899 148 NLSRTSIQI-----LPESINSLYNLNTILLEDCYQLK-----KLCNDMGNL---------KKLRHLKSSNVDSLE--EMP 206 (788)
Q Consensus 148 ~L~~~~i~~-----lp~~i~~L~~L~~L~L~~~~~l~-----~lp~~i~~L---------~~L~~L~l~~~~~l~--~~p 206 (788)
+|++|.+.. +|..+..+++|++|+|++| .+. .++..+..+ ++|++|++++|. +. .+|
T Consensus 100 ~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~-l~~~~~~ 177 (386)
T 2ca6_A 100 RLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNN-GLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNR-LENGSMK 177 (386)
T ss_dssp ECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSS-CCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSC-CTGGGHH
T ss_pred ECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCC-CCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCC-CCcHHHH
Confidence 888888775 6777788888888888887 443 233334444 788888888877 42 333
Q ss_pred ---ccCcCCCCcceeCceE
Q 003899 207 ---KGFGKLTCLLTLGTFV 222 (788)
Q Consensus 207 ---~~i~~l~~L~~L~~~~ 222 (788)
..+..+++|++|++..
T Consensus 178 ~l~~~l~~~~~L~~L~L~~ 196 (386)
T 2ca6_A 178 EWAKTFQSHRLLHTVKMVQ 196 (386)
T ss_dssp HHHHHHHHCTTCCEEECCS
T ss_pred HHHHHHHhCCCcCEEECcC
Confidence 2455666666666544
No 92
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.49 E-value=4.7e-15 Score=154.93 Aligned_cols=199 Identities=19% Similarity=0.197 Sum_probs=93.5
Q ss_pred CCccEEEeccCCc-ceecCCcCCCCccEEecccccccee-eccccccCCCCccEEEEecCcccchhhhcccccccCCCCC
Q 003899 451 PALSELQIDGCER-VVFSSPIDLSSLKSVHLAYVANEVV-LAGLFEQGLPKLENLVIVEVREQAYLWQSETRLLQDIRSL 528 (788)
Q Consensus 451 ~~L~~L~l~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L 528 (788)
++++.|++++|.. ........+++|+.|++++|..... ++. .+..+++|++|++++|...... +..+..+++|
T Consensus 70 ~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~-~~~~~~~L~~L~L~~~~l~~~~----~~~l~~~~~L 144 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHG-ILSQCSKLQNLSLEGLRLSDPI----VNTLAKNSNL 144 (336)
T ss_dssp TTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHH-HHTTBCCCSEEECTTCBCCHHH----HHHHTTCTTC
T ss_pred ccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHH-HHhhCCCCCEEeCcCcccCHHH----HHHHhcCCCC
Confidence 5556666665551 1222334466666666666542211 222 2355667777777766544443 4555566667
Q ss_pred CeEEcccCCCccccccCccccccCCCCcccccceEEEEEecCccCcccccccccCCCCcceEEEecCCCCcc--cCCCCC
Q 003899 529 NRLHISRCPRLLSLVTDEEHDQQQPESPYRLRFLELKIFIYDLENLQSLPAGLHNLRHLQKIWISKCPNLES--FPEEGL 606 (788)
Q Consensus 529 ~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~l~~L~L~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~--~~~~~~ 606 (788)
++|++++|..++.. .++..+..+++|++|++++|..++. ++....
T Consensus 145 ~~L~L~~~~~l~~~---------------------------------~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~ 191 (336)
T 2ast_B 145 VRLNLSGCSGFSEF---------------------------------ALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVA 191 (336)
T ss_dssp SEEECTTCBSCCHH---------------------------------HHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHH
T ss_pred CEEECCCCCCCCHH---------------------------------HHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHH
Confidence 76666666433321 1223344456666666666544432 233333
Q ss_pred CCC-cccEEEecccc-ccc--ccc---cccCccceEeccCCCCCCCC--CCCCCCCCccEEEEeccCCCCcccccccCCC
Q 003899 607 PSA-KLTELMIWRCE-NLK--ALP---NSMSSLLRLGIIGCPSLESF--PEDGFPTNLQSLEVRDLKITKPLLEWGLNRF 677 (788)
Q Consensus 607 ~~~-~L~~L~l~~c~-~l~--~l~---~~~~~L~~L~l~~c~~l~~~--~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l 677 (788)
.++ +|++|++++|. .+. .++ ..+++|++|++++|..++.. +...-.++|+.|++++|..+....-..+.++
T Consensus 192 ~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~ 271 (336)
T 2ast_B 192 HVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEI 271 (336)
T ss_dssp HSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGC
T ss_pred hcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcC
Confidence 345 56666666553 121 121 22335555555555433211 1001124555555555542211111124445
Q ss_pred CCccEEEEcC
Q 003899 678 TSLRNLSIGG 687 (788)
Q Consensus 678 ~~L~~L~l~~ 687 (788)
++|++|++++
T Consensus 272 ~~L~~L~l~~ 281 (336)
T 2ast_B 272 PTLKTLQVFG 281 (336)
T ss_dssp TTCCEEECTT
T ss_pred CCCCEEeccC
Confidence 5555555554
No 93
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.48 E-value=6.3e-14 Score=139.26 Aligned_cols=154 Identities=19% Similarity=0.224 Sum_probs=86.6
Q ss_pred cCCceeEEEEEccCCccccccccccCCCceeEEEeccCCccccchhhhhHHHHhCCCCCeeEEEccCCcCccccc-cccc
Q 003899 61 FCQSLRHFSYICGESDGEKRLQSVCDVEHLRTFLPVNLSNYRINYLAWSVLQMLMNLPRLRVFSLHGYSNIIELP-NEIE 139 (788)
Q Consensus 61 ~~~~~r~lsl~~~~~~~~~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~l~~lp-~~~~ 139 (788)
.+..++.+.+..+.+.... ...+.++++|+.|.+.++. +....+..|..+++|++|++++| .+..+| ..|.
T Consensus 33 ~~~~l~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~n~------l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~ 104 (251)
T 3m19_A 33 IPADTEKLDLQSTGLATLS-DATFRGLTKLTWLNLDYNQ------LQTLSAGVFDDLTELGTLGLANN-QLASLPLGVFD 104 (251)
T ss_dssp CCTTCCEEECTTSCCCCCC-TTTTTTCTTCCEEECTTSC------CCCCCTTTTTTCTTCCEEECTTS-CCCCCCTTTTT
T ss_pred CCCCCCEEEccCCCcCccC-HhHhcCcccCCEEECCCCc------CCccCHhHhccCCcCCEEECCCC-cccccChhHhc
Confidence 3445666666655443321 1335556666666665543 22222224566666666666666 555555 3456
Q ss_pred CCCCCceeeccCCcccccchh-hhccccCcEEEccCccchhhchh-hhhcccCCceEecCCCcCcccCCc-cCcCCCCcc
Q 003899 140 NLKHLRFLNLSRTSIQILPES-INSLYNLNTILLEDCYQLKKLCN-DMGNLKKLRHLKSSNVDSLEEMPK-GFGKLTCLL 216 (788)
Q Consensus 140 ~l~~L~~L~L~~~~i~~lp~~-i~~L~~L~~L~L~~~~~l~~lp~-~i~~L~~L~~L~l~~~~~l~~~p~-~i~~l~~L~ 216 (788)
.+++|++|+|++|.|+.+|.. +..+++|++|+|++| .+..+|. .++.+++|++|++++|. +..+|. .+..+++|+
T Consensus 105 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~ 182 (251)
T 3m19_A 105 HLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTN-QLQSIPAGAFDKLTNLQTLSLSTNQ-LQSVPHGAFDRLGKLQ 182 (251)
T ss_dssp TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCC
T ss_pred ccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCC-cCCccCHHHcCcCcCCCEEECCCCc-CCccCHHHHhCCCCCC
Confidence 666666666666666666433 456666666666666 5555554 35666666666666666 545544 356666666
Q ss_pred eeCceEeC
Q 003899 217 TLGTFVVG 224 (788)
Q Consensus 217 ~L~~~~~~ 224 (788)
+|++.++.
T Consensus 183 ~L~l~~N~ 190 (251)
T 3m19_A 183 TITLFGNQ 190 (251)
T ss_dssp EEECCSCC
T ss_pred EEEeeCCc
Confidence 66655443
No 94
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.48 E-value=4.1e-14 Score=157.70 Aligned_cols=168 Identities=20% Similarity=0.255 Sum_probs=102.1
Q ss_pred CCCCeeEEEccCCcCcccccccccCCCCCceeeccCCcccccchhhhccccCcEEEccCccchhhchhhhhcccCCceEe
Q 003899 116 NLPRLRVFSLHGYSNIIELPNEIENLKHLRFLNLSRTSIQILPESINSLYNLNTILLEDCYQLKKLCNDMGNLKKLRHLK 195 (788)
Q Consensus 116 ~l~~Lr~L~L~~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~ 195 (788)
.+++|+.|++++| .+..+| .+..+++|++|+|++|.+..+|. +..+++|+.|+|++| .+..+| .+..+++|++|+
T Consensus 41 ~L~~L~~L~l~~n-~i~~l~-~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N-~l~~l~-~l~~l~~L~~L~ 115 (605)
T 1m9s_A 41 ELNSIDQIIANNS-DIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDEN-KIKDLS-SLKDLKKLKSLS 115 (605)
T ss_dssp HHTTCCCCBCTTC-CCCCCT-TGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSS-CCCCCT-TSTTCTTCCEEE
T ss_pred cCCCCCEEECcCC-CCCCCh-HHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCC-CCCCCh-hhccCCCCCEEE
Confidence 4555666666666 666664 46666666666666666666655 666666666666666 555555 466666666666
Q ss_pred cCCCcCcccCCccCcCCCCcceeCceEeCCCCCCCcccccccccCCceeEEeccCCCCCchhhhhcccCCCcCCceEEEE
Q 003899 196 SSNVDSLEEMPKGFGKLTCLLTLGTFVVGKDGGSGLRELKSLTHLQGTLQISKLENVKDVGDACEAQLNSKENLQALLLK 275 (788)
Q Consensus 196 l~~~~~l~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~ 275 (788)
+++|. +..+| .++.+++|+.|++..+
T Consensus 116 Ls~N~-l~~l~-~l~~l~~L~~L~Ls~N---------------------------------------------------- 141 (605)
T 1m9s_A 116 LEHNG-ISDIN-GLVHLPQLESLYLGNN---------------------------------------------------- 141 (605)
T ss_dssp CTTSC-CCCCG-GGGGCTTCSEEECCSS----------------------------------------------------
T ss_pred ecCCC-CCCCc-cccCCCccCEEECCCC----------------------------------------------------
Confidence 66666 44442 3555555555554332
Q ss_pred eecCcccCccchhhhhhhcccCccccccceEEEEeeCCCCCCcccCCCCCCCeeEEEECCCCCCCCCCCCCCCCccEEEe
Q 003899 276 WSTRDVQNLDQCEFETHVLSVLKPHQDVQELTITGYGGTKFPIWLGDSSFSKLARLELCRCTSTSLPSVGQLPFLMELDI 355 (788)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~L~~~~~~~l~~l~~l~~L~~L~l 355 (788)
.. . ....+..+++|+.|++++|....++. +. .+++|+.|+|++|.+..++.+..+++|+.|+|
T Consensus 142 --~l----------~--~l~~l~~l~~L~~L~Ls~N~l~~~~~-l~--~l~~L~~L~Ls~N~i~~l~~l~~l~~L~~L~L 204 (605)
T 1m9s_A 142 --KI----------T--DITVLSRLTKLDTLSLEDNQISDIVP-LA--GLTKLQNLYLSKNHISDLRALAGLKNLDVLEL 204 (605)
T ss_dssp --CC----------C--CCGGGGSCTTCSEEECCSSCCCCCGG-GT--TCTTCCEEECCSSCCCBCGGGTTCTTCSEEEC
T ss_pred --cc----------C--CchhhcccCCCCEEECcCCcCCCchh-hc--cCCCCCEEECcCCCCCCChHHccCCCCCEEEc
Confidence 21 0 00223344566666666666555544 32 57777777777777766667777778888888
Q ss_pred cCCC
Q 003899 356 SGMD 359 (788)
Q Consensus 356 ~~~~ 359 (788)
++|+
T Consensus 205 ~~N~ 208 (605)
T 1m9s_A 205 FSQE 208 (605)
T ss_dssp CSEE
T ss_pred cCCc
Confidence 7774
No 95
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.48 E-value=5.2e-15 Score=157.61 Aligned_cols=239 Identities=19% Similarity=0.143 Sum_probs=126.6
Q ss_pred HHhCCCCCeeEEEccCCcCccc-----ccccccCCCCCceeeccCCccc----ccchhh-------hccccCcEEEccCc
Q 003899 112 QMLMNLPRLRVFSLHGYSNIIE-----LPNEIENLKHLRFLNLSRTSIQ----ILPESI-------NSLYNLNTILLEDC 175 (788)
Q Consensus 112 ~~~~~l~~Lr~L~L~~~~~l~~-----lp~~~~~l~~L~~L~L~~~~i~----~lp~~i-------~~L~~L~~L~L~~~ 175 (788)
..+..+++|++|+|++| .+.. ++..+..+++|++|+|++|.+. .+|..+ ..+++|++|+|++|
T Consensus 26 ~~l~~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n 104 (386)
T 2ca6_A 26 AVLLEDDSVKEIVLSGN-TIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDN 104 (386)
T ss_dssp HHHHHCSCCCEEECTTS-EECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSC
T ss_pred HHHhcCCCccEEECCCC-CCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCC
Confidence 34556666666666666 4443 2233556666666666665443 233333 45666666666666
Q ss_pred cchhh-----chhhhhcccCCceEecCCCcCccc-----CCccCcCC---------CCcceeCceEeCCCCCCCc---cc
Q 003899 176 YQLKK-----LCNDMGNLKKLRHLKSSNVDSLEE-----MPKGFGKL---------TCLLTLGTFVVGKDGGSGL---RE 233 (788)
Q Consensus 176 ~~l~~-----lp~~i~~L~~L~~L~l~~~~~l~~-----~p~~i~~l---------~~L~~L~~~~~~~~~~~~~---~~ 233 (788)
.+.. +|..+..+++|++|++++|. +.. ++..+..+ ++|++|++.++........ ..
T Consensus 105 -~l~~~~~~~l~~~l~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~ 182 (386)
T 2ca6_A 105 -AFGPTAQEPLIDFLSKHTPLEHLYLHNNG-LGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKT 182 (386)
T ss_dssp -CCCTTTHHHHHHHHHHCTTCCEEECCSSC-CHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHH
T ss_pred -cCCHHHHHHHHHHHHhCCCCCEEECcCCC-CCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHH
Confidence 3332 55566666666666666666 321 22223333 5666666655544321111 22
Q ss_pred ccccccCCceeEEeccCCCCCchh-hhhcccCCCcCCceEEEEeecCcccCccchhhhhhhcccCccccccceEEEEeeC
Q 003899 234 LKSLTHLQGTLQISKLENVKDVGD-ACEAQLNSKENLQALLLKWSTRDVQNLDQCEFETHVLSVLKPHQDVQELTITGYG 312 (788)
Q Consensus 234 l~~L~~L~~~l~~~~~~~~~~~~~-~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 312 (788)
+..++.|+ .+.+....-...... .....+..+++|+.|+++++.. ........+..+..+++|+.|++++|.
T Consensus 183 l~~~~~L~-~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l------~~~g~~~l~~~l~~~~~L~~L~L~~n~ 255 (386)
T 2ca6_A 183 FQSHRLLH-TVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTF------THLGSSALAIALKSWPNLRELGLNDCL 255 (386)
T ss_dssp HHHCTTCC-EEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCC------HHHHHHHHHHHGGGCTTCCEEECTTCC
T ss_pred HHhCCCcC-EEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCC------CcHHHHHHHHHHccCCCcCEEECCCCC
Confidence 33344444 444333211100000 1111455566677777766554 000113344456666777788877776
Q ss_pred CCCC-----CcccCCCCCCCeeEEEECCCCCCC-----CCC-C-CCCCCccEEEecCCCC
Q 003899 313 GTKF-----PIWLGDSSFSKLARLELCRCTSTS-----LPS-V-GQLPFLMELDISGMDG 360 (788)
Q Consensus 313 ~~~~-----p~~~~~~~~~~L~~L~L~~~~~~~-----l~~-l-~~l~~L~~L~l~~~~~ 360 (788)
.... |.++....+++|+.|++++|.+.. +|. + .++++|++|++++|..
T Consensus 256 i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l 315 (386)
T 2ca6_A 256 LSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRF 315 (386)
T ss_dssp CCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBS
T ss_pred CchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcC
Confidence 5432 344321237788888888888733 554 3 5578888888888853
No 96
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.46 E-value=1.8e-13 Score=130.30 Aligned_cols=150 Identities=16% Similarity=0.187 Sum_probs=120.1
Q ss_pred cCCceeEEEEEccCCccccccccccCCCceeEEEeccCCccccchhhhhHHHHhCCCCCeeEEEccCCcCccc-cccccc
Q 003899 61 FCQSLRHFSYICGESDGEKRLQSVCDVEHLRTFLPVNLSNYRINYLAWSVLQMLMNLPRLRVFSLHGYSNIIE-LPNEIE 139 (788)
Q Consensus 61 ~~~~~r~lsl~~~~~~~~~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~l~~-lp~~~~ 139 (788)
....++++.+..+.+.. ++.+..+++|+.|.+.++. ...+..+..+++|++|++++| .+.. .|..++
T Consensus 42 ~l~~L~~L~l~~n~i~~---l~~l~~l~~L~~L~l~~n~--------~~~~~~l~~l~~L~~L~l~~n-~l~~~~~~~l~ 109 (197)
T 4ezg_A 42 QMNSLTYITLANINVTD---LTGIEYAHNIKDLTINNIH--------ATNYNPISGLSNLERLRIMGK-DVTSDKIPNLS 109 (197)
T ss_dssp HHHTCCEEEEESSCCSC---CTTGGGCTTCSEEEEESCC--------CSCCGGGTTCTTCCEEEEECT-TCBGGGSCCCT
T ss_pred hcCCccEEeccCCCccC---hHHHhcCCCCCEEEccCCC--------CCcchhhhcCCCCCEEEeECC-ccCcccChhhc
Confidence 34578899998886653 2357778899999988763 122236888999999999999 7765 578889
Q ss_pred CCCCCceeeccCCcccc-cchhhhccccCcEEEccCccchhhchhhhhcccCCceEecCCCcCcccCCccCcCCCCccee
Q 003899 140 NLKHLRFLNLSRTSIQI-LPESINSLYNLNTILLEDCYQLKKLCNDMGNLKKLRHLKSSNVDSLEEMPKGFGKLTCLLTL 218 (788)
Q Consensus 140 ~l~~L~~L~L~~~~i~~-lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~i~~l~~L~~L 218 (788)
.+++|++|++++|.++. .|..++.+++|++|++++|..+..+| .+..+++|++|++++|. +..++ .+..+++|++|
T Consensus 110 ~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~-i~~~~-~l~~l~~L~~L 186 (197)
T 4ezg_A 110 GLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDG-VHDYR-GIEDFPKLNQL 186 (197)
T ss_dssp TCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBC-CCCCT-TGGGCSSCCEE
T ss_pred CCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCC-CcChH-HhccCCCCCEE
Confidence 99999999999999985 57889999999999999994488887 58999999999999998 77776 78889999999
Q ss_pred CceEeCC
Q 003899 219 GTFVVGK 225 (788)
Q Consensus 219 ~~~~~~~ 225 (788)
++.++..
T Consensus 187 ~l~~N~i 193 (197)
T 4ezg_A 187 YAFSQTI 193 (197)
T ss_dssp EECBC--
T ss_pred EeeCccc
Confidence 8866543
No 97
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.46 E-value=3.4e-14 Score=141.83 Aligned_cols=166 Identities=21% Similarity=0.208 Sum_probs=111.1
Q ss_pred CCCeeEEEccCCcCcccccccccCCCCCceeeccCCcccccchhhhccccCcEEEccCccchhhchhhhhcccCCceEec
Q 003899 117 LPRLRVFSLHGYSNIIELPNEIENLKHLRFLNLSRTSIQILPESINSLYNLNTILLEDCYQLKKLCNDMGNLKKLRHLKS 196 (788)
Q Consensus 117 l~~Lr~L~L~~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l 196 (788)
+..+..++++++ .+..++ .+..+.+|++|++++|.|+.+| .+..+++|++|++++| .+..+|. +..+++|++|++
T Consensus 18 l~~l~~l~l~~~-~i~~~~-~~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N-~i~~~~~-l~~l~~L~~L~L 92 (263)
T 1xeu_A 18 LANAVKQNLGKQ-SVTDLV-SQKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHN-QISDLSP-LKDLTKLEELSV 92 (263)
T ss_dssp HHHHHHHHHTCS-CTTSEE-CHHHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSS-CCCCCGG-GTTCSSCCEEEC
T ss_pred HHHHHHHHhcCC-Cccccc-chhhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCC-ccCCChh-hccCCCCCEEEC
Confidence 445666677777 777776 5777888888888888888877 5778888888888887 6777776 888888888888
Q ss_pred CCCcCcccCCccCcCCCCcceeCceEeCCCCCCCcccccccccCCceeEEeccCCCCCchhhhhcccCCCcCCceEEEEe
Q 003899 197 SNVDSLEEMPKGFGKLTCLLTLGTFVVGKDGGSGLRELKSLTHLQGTLQISKLENVKDVGDACEAQLNSKENLQALLLKW 276 (788)
Q Consensus 197 ~~~~~l~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~ 276 (788)
++|. +..+|.... ++|++|++.++....
T Consensus 93 ~~N~-l~~l~~~~~--~~L~~L~L~~N~l~~------------------------------------------------- 120 (263)
T 1xeu_A 93 NRNR-LKNLNGIPS--ACLSRLFLDNNELRD------------------------------------------------- 120 (263)
T ss_dssp CSSC-CSCCTTCCC--SSCCEEECCSSCCSB-------------------------------------------------
T ss_pred CCCc-cCCcCcccc--CcccEEEccCCccCC-------------------------------------------------
Confidence 8887 665554322 555555543321100
Q ss_pred ecCcccCccchhhhhhhcccCccccccceEEEEeeCCCCCCcccCCCCCCCeeEEEECCCCCCCCCCCCCCCCccEEEec
Q 003899 277 STRDVQNLDQCEFETHVLSVLKPHQDVQELTITGYGGTKFPIWLGDSSFSKLARLELCRCTSTSLPSVGQLPFLMELDIS 356 (788)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~L~~~~~~~l~~l~~l~~L~~L~l~ 356 (788)
.+.+..+++|+.|++++|....+| .+. .+++|+.|++++|.+..++.+..+++|+.|+++
T Consensus 121 -----------------~~~l~~l~~L~~L~Ls~N~i~~~~-~l~--~l~~L~~L~L~~N~i~~~~~l~~l~~L~~L~l~ 180 (263)
T 1xeu_A 121 -----------------TDSLIHLKNLEILSIRNNKLKSIV-MLG--FLSKLEVLDLHGNEITNTGGLTRLKKVNWIDLT 180 (263)
T ss_dssp -----------------SGGGTTCTTCCEEECTTSCCCBCG-GGG--GCTTCCEEECTTSCCCBCTTSTTCCCCCEEEEE
T ss_pred -----------------ChhhcCcccccEEECCCCcCCCCh-HHc--cCCCCCEEECCCCcCcchHHhccCCCCCEEeCC
Confidence 011333455555666555555554 232 577788888888887555667788888888888
Q ss_pred CCC
Q 003899 357 GMD 359 (788)
Q Consensus 357 ~~~ 359 (788)
+|+
T Consensus 181 ~N~ 183 (263)
T 1xeu_A 181 GQK 183 (263)
T ss_dssp EEE
T ss_pred CCc
Confidence 774
No 98
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.46 E-value=5.2e-15 Score=155.92 Aligned_cols=115 Identities=14% Similarity=0.119 Sum_probs=82.4
Q ss_pred hhhhHHHHhCCCCCeeEEEccCCcCccccc-----ccccCCC-CCceeeccCCccccc-chhhhcc-----ccCcEEEcc
Q 003899 106 LAWSVLQMLMNLPRLRVFSLHGYSNIIELP-----NEIENLK-HLRFLNLSRTSIQIL-PESINSL-----YNLNTILLE 173 (788)
Q Consensus 106 ~~~~~~~~~~~l~~Lr~L~L~~~~~l~~lp-----~~~~~l~-~L~~L~L~~~~i~~l-p~~i~~L-----~~L~~L~L~ 173 (788)
+.+.+|..+...++|++|+|++| .+...+ ..+.+++ +|++|+|++|.|... +..+..+ ++|++|+|+
T Consensus 10 ~~~~~~~~~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls 88 (362)
T 3goz_A 10 GSNPVEEFTSIPHGVTSLDLSLN-NLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLS 88 (362)
T ss_dssp TCCHHHHHHTSCTTCCEEECTTS-CGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECC
T ss_pred chHHHHHHHhCCCCceEEEccCC-CCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECc
Confidence 44566667777777999999998 787765 5667888 899999999988865 6667775 889999999
Q ss_pred Cccchhhc-hhhhh----cc-cCCceEecCCCcCcccCCcc-----CcC-CCCcceeCceEe
Q 003899 174 DCYQLKKL-CNDMG----NL-KKLRHLKSSNVDSLEEMPKG-----FGK-LTCLLTLGTFVV 223 (788)
Q Consensus 174 ~~~~l~~l-p~~i~----~L-~~L~~L~l~~~~~l~~~p~~-----i~~-l~~L~~L~~~~~ 223 (788)
+| .+... +..+. .+ ++|++|++++|. +...+.. +.. .++|++|++.++
T Consensus 89 ~n-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N 148 (362)
T 3goz_A 89 GN-FLSYKSSDELVKTLAAIPFTITVLDLGWND-FSSKSSSEFKQAFSNLPASITSLNLRGN 148 (362)
T ss_dssp SS-CGGGSCHHHHHHHHHTSCTTCCEEECCSSC-GGGSCHHHHHHHHTTSCTTCCEEECTTS
T ss_pred CC-cCChHHHHHHHHHHHhCCCCccEEECcCCc-CCcHHHHHHHHHHHhCCCceeEEEccCC
Confidence 98 55543 33343 34 789999999998 6555432 233 257777776443
No 99
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.46 E-value=1.5e-13 Score=151.22 Aligned_cols=180 Identities=15% Similarity=0.172 Sum_probs=131.2
Q ss_pred CeeEEEccCCcCcccccccccCCCCCceeeccCCcccccchhhhccccCcEEEccCccchhhchhhhhcccCCceEecCC
Q 003899 119 RLRVFSLHGYSNIIELPNEIENLKHLRFLNLSRTSIQILPESINSLYNLNTILLEDCYQLKKLCNDMGNLKKLRHLKSSN 198 (788)
Q Consensus 119 ~Lr~L~L~~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~ 198 (788)
+|++|++++| .+..+|..+. ++|++|+|++|.|+.+| ..+++|++|++++| .+..+|. +.. +|++|++++
T Consensus 60 ~L~~L~Ls~n-~L~~lp~~l~--~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N-~l~~ip~-l~~--~L~~L~Ls~ 129 (571)
T 3cvr_A 60 QFSELQLNRL-NLSSLPDNLP--PQITVLEITQNALISLP---ELPASLEYLDACDN-RLSTLPE-LPA--SLKHLDVDN 129 (571)
T ss_dssp TCSEEECCSS-CCSCCCSCCC--TTCSEEECCSSCCSCCC---CCCTTCCEEECCSS-CCSCCCC-CCT--TCCEEECCS
T ss_pred CccEEEeCCC-CCCccCHhHc--CCCCEEECcCCCCcccc---cccCCCCEEEccCC-CCCCcch-hhc--CCCEEECCC
Confidence 8999999999 8888987663 78999999999999998 55889999999999 7878888 665 999999999
Q ss_pred CcCcccCCccCcCCCCcceeCceEeCCCCCCCcccccccccCCceeEEeccCCCCCchhhhhcccCCCcCCceEEEEeec
Q 003899 199 VDSLEEMPKGFGKLTCLLTLGTFVVGKDGGSGLRELKSLTHLQGTLQISKLENVKDVGDACEAQLNSKENLQALLLKWST 278 (788)
Q Consensus 199 ~~~l~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 278 (788)
|. +..+|. .+++|++|++.++.... ++. .+++|+.|++++|.
T Consensus 130 N~-l~~lp~---~l~~L~~L~Ls~N~l~~------lp~----------------------------~l~~L~~L~Ls~N~ 171 (571)
T 3cvr_A 130 NQ-LTMLPE---LPALLEYINADNNQLTM------LPE----------------------------LPTSLEVLSVRNNQ 171 (571)
T ss_dssp SC-CSCCCC---CCTTCCEEECCSSCCSC------CCC----------------------------CCTTCCEEECCSSC
T ss_pred Cc-CCCCCC---cCccccEEeCCCCccCc------CCC----------------------------cCCCcCEEECCCCC
Confidence 98 777887 67888888875543211 000 12466777776665
Q ss_pred CcccCccchhhhhhhcccCccccccceEEEEeeCCCCCCcccCCCCCCCe-------eEEEECCCCCCCCCC-CCCCCCc
Q 003899 279 RDVQNLDQCEFETHVLSVLKPHQDVQELTITGYGGTKFPIWLGDSSFSKL-------ARLELCRCTSTSLPS-VGQLPFL 350 (788)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L-------~~L~L~~~~~~~l~~-l~~l~~L 350 (788)
. .. ++. +. ++|+.|++++|.+..+|. +. .+| +.|++++|.+..+|. +..+++|
T Consensus 172 L----------~~-lp~-l~--~~L~~L~Ls~N~L~~lp~-~~----~~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L 232 (571)
T 3cvr_A 172 L----------TF-LPE-LP--ESLEALDVSTNLLESLPA-VP----VRNHHSEETEIFFRCRENRITHIPENILSLDPT 232 (571)
T ss_dssp C----------SC-CCC-CC--TTCCEEECCSSCCSSCCC-CC------------CCEEEECCSSCCCCCCGGGGGSCTT
T ss_pred C----------CC-cch-hh--CCCCEEECcCCCCCchhh-HH----HhhhcccccceEEecCCCcceecCHHHhcCCCC
Confidence 4 11 122 32 678888888887777776 43 155 888888888866775 6668888
Q ss_pred cEEEecCCCCceEeC
Q 003899 351 MELDISGMDGVKSVG 365 (788)
Q Consensus 351 ~~L~l~~~~~~~~~~ 365 (788)
+.|++++|+....++
T Consensus 233 ~~L~L~~N~l~~~~p 247 (571)
T 3cvr_A 233 CTIILEDNPLSSRIR 247 (571)
T ss_dssp EEEECCSSSCCHHHH
T ss_pred CEEEeeCCcCCCcCH
Confidence 888888886544433
No 100
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.45 E-value=1.5e-13 Score=139.49 Aligned_cols=125 Identities=22% Similarity=0.296 Sum_probs=90.0
Q ss_pred ccCCCceeEEEeccCCccccchhhhhHHHHhCCCCCeeEEEccCCcCcccccccccCCCCCceeeccCCcccccchhhhc
Q 003899 84 VCDVEHLRTFLPVNLSNYRINYLAWSVLQMLMNLPRLRVFSLHGYSNIIELPNEIENLKHLRFLNLSRTSIQILPESINS 163 (788)
Q Consensus 84 ~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~ 163 (788)
..++++|+.|.+.++.- ..++ .+..+++|++|++++| .+..++. +.++++|++|++++|.++.+|. +..
T Consensus 42 ~~~l~~L~~L~l~~~~i-------~~~~-~~~~l~~L~~L~L~~n-~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~ 110 (291)
T 1h6t_A 42 QNELNSIDQIIANNSDI-------KSVQ-GIQYLPNVTKLFLNGN-KLTDIKP-LANLKNLGWLFLDENKVKDLSS-LKD 110 (291)
T ss_dssp HHHHHTCCEEECTTSCC-------CCCT-TGGGCTTCCEEECCSS-CCCCCGG-GTTCTTCCEEECCSSCCCCGGG-GTT
T ss_pred hhhcCcccEEEccCCCc-------ccCh-hHhcCCCCCEEEccCC-ccCCCcc-cccCCCCCEEECCCCcCCCChh-hcc
Confidence 34566777777666431 1222 3667788888888888 7777765 7888888888888888877765 788
Q ss_pred cccCcEEEccCccchhhchhhhhcccCCceEecCCCcCcccCCccCcCCCCcceeCceEe
Q 003899 164 LYNLNTILLEDCYQLKKLCNDMGNLKKLRHLKSSNVDSLEEMPKGFGKLTCLLTLGTFVV 223 (788)
Q Consensus 164 L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~i~~l~~L~~L~~~~~ 223 (788)
+++|++|++++| .+..++ .+..+++|++|++++|. +..+ ..++.+++|++|++.++
T Consensus 111 l~~L~~L~L~~n-~i~~~~-~l~~l~~L~~L~l~~n~-l~~~-~~l~~l~~L~~L~L~~N 166 (291)
T 1h6t_A 111 LKKLKSLSLEHN-GISDIN-GLVHLPQLESLYLGNNK-ITDI-TVLSRLTKLDTLSLEDN 166 (291)
T ss_dssp CTTCCEEECTTS-CCCCCG-GGGGCTTCCEEECCSSC-CCCC-GGGGGCTTCSEEECCSS
T ss_pred CCCCCEEECCCC-cCCCCh-hhcCCCCCCEEEccCCc-CCcc-hhhccCCCCCEEEccCC
Confidence 888888888888 666664 47788888888888887 6665 45777777777776444
No 101
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.44 E-value=1.4e-13 Score=130.97 Aligned_cols=36 Identities=14% Similarity=0.141 Sum_probs=26.6
Q ss_pred CCCCeeEEEECCCCCCCCCCCCCCCCccEEEecCCC
Q 003899 324 SFSKLARLELCRCTSTSLPSVGQLPFLMELDISGMD 359 (788)
Q Consensus 324 ~~~~L~~L~L~~~~~~~l~~l~~l~~L~~L~l~~~~ 359 (788)
.+++|+.|++++|.+..++.+..+++|++|++++|+
T Consensus 157 ~l~~L~~L~l~~n~i~~~~~l~~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 157 TLPELKSLNIQFDGVHDYRGIEDFPKLNQLYAFSQT 192 (197)
T ss_dssp GCSSCCEEECTTBCCCCCTTGGGCSSCCEEEECBC-
T ss_pred CCCCCCEEECCCCCCcChHHhccCCCCCEEEeeCcc
Confidence 467777777777777666677778888888887774
No 102
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.41 E-value=1.8e-13 Score=123.79 Aligned_cols=126 Identities=17% Similarity=0.223 Sum_probs=101.8
Q ss_pred CCCceeEEEeccCCccccchhh-hhHHHHhCCCCCeeEEEccCCcCcccccccccCCCCCceeeccCCcccc-cchhhhc
Q 003899 86 DVEHLRTFLPVNLSNYRINYLA-WSVLQMLMNLPRLRVFSLHGYSNIIELPNEIENLKHLRFLNLSRTSIQI-LPESINS 163 (788)
Q Consensus 86 ~~~~Lr~L~~~~~~~~~~~~~~-~~~~~~~~~l~~Lr~L~L~~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~-lp~~i~~ 163 (788)
..++++.|.+.++. +. +.+|..+..+++|++|++++| .+..+ ..++.+++|++|++++|.+.. +|..++.
T Consensus 15 ~~~~l~~L~l~~n~------l~~~~~~~~~~~l~~L~~L~l~~n-~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~ 86 (149)
T 2je0_A 15 TPSDVKELVLDNSR------SNEGKLEGLTDEFEELEFLSTINV-GLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEK 86 (149)
T ss_dssp CGGGCSEEECTTCB------CBTTBCCSCCTTCTTCCEEECTTS-CCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHH
T ss_pred CCccCeEEEccCCc------CChhHHHHHHhhcCCCcEEECcCC-CCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhh
Confidence 34677888777753 22 355556788899999999999 88887 778899999999999999987 7887888
Q ss_pred cccCcEEEccCccchhhch--hhhhcccCCceEecCCCcCcccCCc----cCcCCCCcceeCce
Q 003899 164 LYNLNTILLEDCYQLKKLC--NDMGNLKKLRHLKSSNVDSLEEMPK----GFGKLTCLLTLGTF 221 (788)
Q Consensus 164 L~~L~~L~L~~~~~l~~lp--~~i~~L~~L~~L~l~~~~~l~~~p~----~i~~l~~L~~L~~~ 221 (788)
+++|++|++++| .+..+| ..++.+++|++|++++|. +..+|. .++.+++|++|++.
T Consensus 87 l~~L~~L~ls~N-~i~~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 87 CPNLTHLNLSGN-KIKDLSTIEPLKKLENLKSLDLFNCE-VTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp CTTCCEEECTTS-CCCSHHHHGGGGGCTTCCEEECTTCG-GGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CCCCCEEECCCC-cCCChHHHHHHhhCCCCCEEeCcCCc-ccchHHHHHHHHHHCCCcccccCC
Confidence 999999999998 677765 678899999999999998 777776 48888899988763
No 103
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.41 E-value=2.3e-13 Score=125.98 Aligned_cols=129 Identities=21% Similarity=0.238 Sum_probs=99.3
Q ss_pred CCceeEEEeccCCccccchhh-hhHHHHhCCCCCeeEEEccCCcCcccccccccCCCCCceeeccCCcccc-cchhhhcc
Q 003899 87 VEHLRTFLPVNLSNYRINYLA-WSVLQMLMNLPRLRVFSLHGYSNIIELPNEIENLKHLRFLNLSRTSIQI-LPESINSL 164 (788)
Q Consensus 87 ~~~Lr~L~~~~~~~~~~~~~~-~~~~~~~~~l~~Lr~L~L~~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~-lp~~i~~L 164 (788)
.++|+.|.+.++. +. ..+|..+..+++|++|++++| .+..+ ..+..+++|++|++++|.+.. +|..+..+
T Consensus 23 ~~~L~~L~l~~n~------l~~~~i~~~~~~l~~L~~L~l~~n-~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l 94 (168)
T 2ell_A 23 PAAVRELVLDNCK------SNDGKIEGLTAEFVNLEFLSLINV-GLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKL 94 (168)
T ss_dssp TTSCSEEECCSCB------CBTTBCSSCCGGGGGCCEEEEESS-CCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHC
T ss_pred cccCCEEECCCCC------CChhhHHHHHHhCCCCCEEeCcCC-CCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhC
Confidence 4667777776653 22 345556677888888888888 77777 677888888888888888887 67777778
Q ss_pred ccCcEEEccCccchhhch--hhhhcccCCceEecCCCcCcccCCc----cCcCCCCcceeCceEeCC
Q 003899 165 YNLNTILLEDCYQLKKLC--NDMGNLKKLRHLKSSNVDSLEEMPK----GFGKLTCLLTLGTFVVGK 225 (788)
Q Consensus 165 ~~L~~L~L~~~~~l~~lp--~~i~~L~~L~~L~l~~~~~l~~~p~----~i~~l~~L~~L~~~~~~~ 225 (788)
++|++|++++| .+..+| ..+..+++|++|++++|. +..+|. .+..+++|++|++..+..
T Consensus 95 ~~L~~L~Ls~N-~l~~~~~~~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~~n~~ 159 (168)
T 2ell_A 95 PNLTHLNLSGN-KLKDISTLEPLKKLECLKSLDLFNCE-VTNLNDYRESVFKLLPQLTYLDGYDRED 159 (168)
T ss_dssp TTCCEEECBSS-SCCSSGGGGGGSSCSCCCEEECCSSG-GGTSTTHHHHHHTTCSSCCEETTEETTS
T ss_pred CCCCEEeccCC-ccCcchhHHHHhcCCCCCEEEeeCCc-CcchHHHHHHHHHhCccCcEecCCCCCh
Confidence 88888888888 777766 568888888888888888 777776 578888888888877654
No 104
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.41 E-value=3.2e-13 Score=131.81 Aligned_cols=130 Identities=20% Similarity=0.301 Sum_probs=109.3
Q ss_pred CCceeEEEeccCCccccchhhhhHHHHhCCCCCeeEEEccCCcCccccc-ccccCCCCCceeeccCCcccccch-hhhcc
Q 003899 87 VEHLRTFLPVNLSNYRINYLAWSVLQMLMNLPRLRVFSLHGYSNIIELP-NEIENLKHLRFLNLSRTSIQILPE-SINSL 164 (788)
Q Consensus 87 ~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~l~~lp-~~~~~l~~L~~L~L~~~~i~~lp~-~i~~L 164 (788)
.++|+.|.+.++. +....+..|..+++|++|+|++| .+..+| ..|..+++|++|+|++|.|+.+|. .+..+
T Consensus 39 ~~~L~~L~Ls~n~------i~~~~~~~~~~l~~L~~L~L~~N-~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l 111 (229)
T 3e6j_A 39 PTNAQILYLHDNQ------ITKLEPGVFDSLINLKELYLGSN-QLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRL 111 (229)
T ss_dssp CTTCSEEECCSSC------CCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred CCCCCEEEcCCCc------cCccCHHHhhCccCCcEEECCCC-CCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcc
Confidence 3788999888764 33333457899999999999999 888887 557999999999999999998865 46889
Q ss_pred ccCcEEEccCccchhhchhhhhcccCCceEecCCCcCcccCCcc-CcCCCCcceeCceEeCC
Q 003899 165 YNLNTILLEDCYQLKKLCNDMGNLKKLRHLKSSNVDSLEEMPKG-FGKLTCLLTLGTFVVGK 225 (788)
Q Consensus 165 ~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~-i~~l~~L~~L~~~~~~~ 225 (788)
++|++|++++| .+..+|..+..+++|++|++++|. +..+|.. +..+++|++|++.++..
T Consensus 112 ~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~~ 171 (229)
T 3e6j_A 112 VHLKELFMCCN-KLTELPRGIERLTHLTHLALDQNQ-LKSIPHGAFDRLSSLTHAYLFGNPW 171 (229)
T ss_dssp TTCCEEECCSS-CCCSCCTTGGGCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECTTSCB
T ss_pred hhhCeEeccCC-cccccCcccccCCCCCEEECCCCc-CCccCHHHHhCCCCCCEEEeeCCCc
Confidence 99999999999 788999999999999999999998 7788755 88899999998866544
No 105
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.38 E-value=9.6e-13 Score=135.25 Aligned_cols=221 Identities=15% Similarity=0.096 Sum_probs=111.6
Q ss_pred CccEEEEecCcccchhhhcccccccCCCCCCeEEcccCCCccccccCcccc--ccCCCCcccccceEE-EEEecCccCcc
Q 003899 499 KLENLVIVEVREQAYLWQSETRLLQDIRSLNRLHISRCPRLLSLVTDEEHD--QQQPESPYRLRFLEL-KIFIYDLENLQ 575 (788)
Q Consensus 499 ~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~--~~~~~~~~~l~~L~L-~L~l~~~~~l~ 575 (788)
.++.+.+.++......... ...+..+++|++|++++|......+.. + ..+++ | .++++++....
T Consensus 65 ~l~~l~l~~~~~~~~~~~~-~~~~~~~~~L~~L~l~~n~l~~~~~~~---~~~~~~~~---------L~~L~Ls~n~i~~ 131 (310)
T 4glp_A 65 RVRRLTVGAAQVPAQLLVG-ALRVLAYSRLKELTLEDLKITGTMPPL---PLEATGLA---------LSSLRLRNVSWAT 131 (310)
T ss_dssp CCCEEEECSCCCBHHHHHH-HHHHHHHSCCCEEEEESCCCBSCCCCC---SSSCCCBC---------CSSCEEESCCCSS
T ss_pred ceeEEEEeCCcCCHHHHHH-HHHhcccCceeEEEeeCCEeccchhhh---hhhccCCC---------CCEEEeecccccc
Confidence 4566666666543321100 111224567999999987533333322 0 11222 3 44455444332
Q ss_pred ccc----ccccCCCCcceEEEecCCCCcccC-CCCCCCCcccEEEecccccccc--cccccCccceEeccCCCCCCCCCC
Q 003899 576 SLP----AGLHNLRHLQKIWISKCPNLESFP-EEGLPSAKLTELMIWRCENLKA--LPNSMSSLLRLGIIGCPSLESFPE 648 (788)
Q Consensus 576 ~l~----~~~~~l~~L~~L~l~~c~~l~~~~-~~~~~~~~L~~L~l~~c~~l~~--l~~~~~~L~~L~l~~c~~l~~~~~ 648 (788)
..+ ..+..+++|++|++++|. +..++ ..+..+++|++|++++|..... ++.. ..
T Consensus 132 ~~~~~~~~~~~~~~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~------------------~~ 192 (310)
T 4glp_A 132 GRSWLAELQQWLKPGLKVLSIAQAH-SPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAA------------------LC 192 (310)
T ss_dssp TTSSHHHHHTTBCSCCCEEEEECCS-SCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTT------------------SC
T ss_pred hhhhhHHHHhhhccCCCEEEeeCCC-cchhhHHHhccCCCCCEEECCCCCCccchhhhHH------------------Hh
Confidence 221 122345566666666543 33332 3333455555555555543221 1000 00
Q ss_pred CCCCCCccEEEEeccCCCCccc---ccccCCCCCccEEEEcCCCCCcccC-CC------CCCCCCeEecCCCCCcccchh
Q 003899 649 DGFPTNLQSLEVRDLKITKPLL---EWGLNRFTSLRNLSIGGGYPDLLSS-PP------FPASLTELWISDMPDLECLSS 718 (788)
Q Consensus 649 ~~~~~~L~~L~l~~~~~~~~~~---~~~~~~l~~L~~L~l~~~~~~~~~~-~~------~~~~L~~L~l~~~~~l~~l~~ 718 (788)
....++|++|++++|... .++ ...++++++|++|++++ +.+..+ |. .+++|++|++++ +.++.+|.
T Consensus 193 ~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~~l~~L~~L~Ls~--N~l~~~~p~~~~~~~~~~~L~~L~Ls~-N~l~~lp~ 268 (310)
T 4glp_A 193 PHKFPAIQNLALRNTGME-TPTGVCAALAAAGVQPHSLDLSH--NSLRATVNPSAPRCMWSSALNSLNLSF-AGLEQVPK 268 (310)
T ss_dssp TTSSCCCCSCBCCSSCCC-CHHHHHHHHHHHTCCCSSEECTT--SCCCCCCCSCCSSCCCCTTCCCEECCS-SCCCSCCS
T ss_pred hhcCCCCCEEECCCCCCC-chHHHHHHHHhcCCCCCEEECCC--CCCCccchhhHHhccCcCcCCEEECCC-CCCCchhh
Confidence 011235555555555432 111 11235566777777776 344443 32 235777777777 46777776
Q ss_pred hcCCCCCCCceecccCCCCcccCCCCCcCCcceEeecCCh
Q 003899 719 ISENLTSLEFLYLIDCPKLKYFPEQGLPKSLSRLSIHNCP 758 (788)
Q Consensus 719 ~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~i~~c~ 758 (788)
.+. ++|++|++++| .++.+|....+++|++|++++++
T Consensus 269 ~~~--~~L~~L~Ls~N-~l~~~~~~~~l~~L~~L~L~~N~ 305 (310)
T 4glp_A 269 GLP--AKLRVLDLSSN-RLNRAPQPDELPEVDNLTLDGNP 305 (310)
T ss_dssp CCC--SCCSCEECCSC-CCCSCCCTTSCCCCSCEECSSTT
T ss_pred hhc--CCCCEEECCCC-cCCCCchhhhCCCccEEECcCCC
Confidence 553 67888888877 57766654455778888887775
No 106
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.38 E-value=3e-13 Score=150.70 Aligned_cols=125 Identities=23% Similarity=0.304 Sum_probs=100.2
Q ss_pred ccCCCceeEEEeccCCccccchhhhhHHHHhCCCCCeeEEEccCCcCcccccccccCCCCCceeeccCCcccccchhhhc
Q 003899 84 VCDVEHLRTFLPVNLSNYRINYLAWSVLQMLMNLPRLRVFSLHGYSNIIELPNEIENLKHLRFLNLSRTSIQILPESINS 163 (788)
Q Consensus 84 ~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~ 163 (788)
...+++|+.|.+.++.- ..++ .+..+++|+.|+|++| .+..+|. +..+++|++|+|++|.+..+| .+..
T Consensus 39 ~~~L~~L~~L~l~~n~i-------~~l~-~l~~l~~L~~L~Ls~N-~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~-~l~~ 107 (605)
T 1m9s_A 39 QNELNSIDQIIANNSDI-------KSVQ-GIQYLPNVTKLFLNGN-KLTDIKP-LTNLKNLGWLFLDENKIKDLS-SLKD 107 (605)
T ss_dssp HHHHTTCCCCBCTTCCC-------CCCT-TGGGCTTCCEEECTTS-CCCCCGG-GGGCTTCCEEECCSSCCCCCT-TSTT
T ss_pred hhcCCCCCEEECcCCCC-------CCCh-HHccCCCCCEEEeeCC-CCCCChh-hccCCCCCEEECcCCCCCCCh-hhcc
Confidence 34567777777666431 2222 4788999999999999 8888876 889999999999999999887 5899
Q ss_pred cccCcEEEccCccchhhchhhhhcccCCceEecCCCcCcccCCccCcCCCCcceeCceEe
Q 003899 164 LYNLNTILLEDCYQLKKLCNDMGNLKKLRHLKSSNVDSLEEMPKGFGKLTCLLTLGTFVV 223 (788)
Q Consensus 164 L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~i~~l~~L~~L~~~~~ 223 (788)
+++|+.|+|++| .+..+| .+..+++|+.|++++|. +..+ ..++.+++|+.|++..+
T Consensus 108 l~~L~~L~Ls~N-~l~~l~-~l~~l~~L~~L~Ls~N~-l~~l-~~l~~l~~L~~L~Ls~N 163 (605)
T 1m9s_A 108 LKKLKSLSLEHN-GISDIN-GLVHLPQLESLYLGNNK-ITDI-TVLSRLTKLDTLSLEDN 163 (605)
T ss_dssp CTTCCEEECTTS-CCCCCG-GGGGCTTCSEEECCSSC-CCCC-GGGGSCTTCSEEECCSS
T ss_pred CCCCCEEEecCC-CCCCCc-cccCCCccCEEECCCCc-cCCc-hhhcccCCCCEEECcCC
Confidence 999999999999 777776 48999999999999998 6666 56778888888877443
No 107
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.37 E-value=8e-13 Score=151.36 Aligned_cols=157 Identities=18% Similarity=0.172 Sum_probs=101.3
Q ss_pred CCceeEEEEEccCCccccccccccCCCceeEEEeccCCccccchhhhhHHHHhCCCCCeeEEEccCCcCcccccccccCC
Q 003899 62 CQSLRHFSYICGESDGEKRLQSVCDVEHLRTFLPVNLSNYRINYLAWSVLQMLMNLPRLRVFSLHGYSNIIELPNEIENL 141 (788)
Q Consensus 62 ~~~~r~lsl~~~~~~~~~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~l~~lp~~~~~l 141 (788)
...++++++..+..... ........+|+.+.+..... ..+.+ ...+..|..++.|++|+|++| .+..+|..+.++
T Consensus 172 ~~~~~~l~L~~n~~~~~--~~~~l~~l~Ls~~~i~~~~~-~~n~~-~~~~~~~~~l~~L~~L~Ls~n-~l~~l~~~~~~l 246 (727)
T 4b8c_D 172 TPLTPKIELFANGKDEA--NQALLQHKKLSQYSIDEDDD-IENRM-VMPKDSKYDDQLWHALDLSNL-QIFNISANIFKY 246 (727)
T ss_dssp ------------------------------------------------------CCCCCCEEECTTS-CCSCCCGGGGGC
T ss_pred CCccceEEeeCCCCCcc--hhhHhhcCccCcccccCccc-cccce-ecChhhhccCCCCcEEECCCC-CCCCCChhhcCC
Confidence 35678888877654332 12233334444444333211 00111 222448999999999999999 899999888899
Q ss_pred CCCceeeccCCcccccchhhhccccCcEEEccCccchhhchhhhhcccCCceEecCCCcCcccCCccCcCCCCcceeCce
Q 003899 142 KHLRFLNLSRTSIQILPESINSLYNLNTILLEDCYQLKKLCNDMGNLKKLRHLKSSNVDSLEEMPKGFGKLTCLLTLGTF 221 (788)
Q Consensus 142 ~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~i~~l~~L~~L~~~ 221 (788)
.+|++|+|++|.|+.+|..|+.|++|++|+|++| .+..+|..|+.|++|++|++++|. +..+|..|+.|++|++|++.
T Consensus 247 ~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~L~~N~-l~~lp~~~~~l~~L~~L~L~ 324 (727)
T 4b8c_D 247 DFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHN-RLTSLPAELGSCFQLKYFYFFDNM-VTTLPWEFGNLCNLQFLGVE 324 (727)
T ss_dssp CSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTS-CCSSCCSSGGGGTTCSEEECCSSC-CCCCCSSTTSCTTCCCEECT
T ss_pred CCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCC-cCCccChhhcCCCCCCEEECCCCC-CCccChhhhcCCCccEEeCC
Confidence 9999999999999999999999999999999999 788999999999999999999998 88999999999999999986
Q ss_pred EeCC
Q 003899 222 VVGK 225 (788)
Q Consensus 222 ~~~~ 225 (788)
++..
T Consensus 325 ~N~l 328 (727)
T 4b8c_D 325 GNPL 328 (727)
T ss_dssp TSCC
T ss_pred CCcc
Confidence 6644
No 108
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.37 E-value=3.3e-12 Score=124.59 Aligned_cols=95 Identities=25% Similarity=0.323 Sum_probs=68.8
Q ss_pred eEEEccCCcCcccccccccCCCCCceeeccCCccccc-chhhhccccCcEEEccCccchhhchhh-hhcccCCceEecCC
Q 003899 121 RVFSLHGYSNIIELPNEIENLKHLRFLNLSRTSIQIL-PESINSLYNLNTILLEDCYQLKKLCND-MGNLKKLRHLKSSN 198 (788)
Q Consensus 121 r~L~L~~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~~~l~~lp~~-i~~L~~L~~L~l~~ 198 (788)
+.++.+++ .+..+|..+. .+|++|+|++|.|..+ |..+..+++|++|+|++| .+..+|.. +..+++|++|++++
T Consensus 22 ~~v~c~~~-~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N-~l~~i~~~~~~~l~~L~~L~Ls~ 97 (229)
T 3e6j_A 22 TTVDCRSK-RHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSN-QLGALPVGVFDSLTQLTVLDLGT 97 (229)
T ss_dssp TEEECTTS-CCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCS
T ss_pred CEeEccCC-CcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCC-CCCCcChhhcccCCCcCEEECCC
Confidence 56777777 7888886554 7788888888888876 667788888888888888 67777755 57888888888888
Q ss_pred CcCcccCCcc-CcCCCCcceeCc
Q 003899 199 VDSLEEMPKG-FGKLTCLLTLGT 220 (788)
Q Consensus 199 ~~~l~~~p~~-i~~l~~L~~L~~ 220 (788)
|. +..+|.. ++.+++|++|++
T Consensus 98 N~-l~~l~~~~~~~l~~L~~L~L 119 (229)
T 3e6j_A 98 NQ-LTVLPSAVFDRLVHLKELFM 119 (229)
T ss_dssp SC-CCCCCTTTTTTCTTCCEEEC
T ss_pred Cc-CCccChhHhCcchhhCeEec
Confidence 87 6555544 455555555544
No 109
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.36 E-value=9e-14 Score=146.40 Aligned_cols=203 Identities=11% Similarity=0.075 Sum_probs=121.5
Q ss_pred EEEccCCcCcccc-cccccCCCCCceeeccCCcccccc-----hhhhccc-cCcEEEccCccchhhc-hhhhhcc-----
Q 003899 122 VFSLHGYSNIIEL-PNEIENLKHLRFLNLSRTSIQILP-----ESINSLY-NLNTILLEDCYQLKKL-CNDMGNL----- 188 (788)
Q Consensus 122 ~L~L~~~~~l~~l-p~~~~~l~~L~~L~L~~~~i~~lp-----~~i~~L~-~L~~L~L~~~~~l~~l-p~~i~~L----- 188 (788)
+++++.| .+... |..+....+|++|+|++|.++..+ ..+..++ +|++|+|++| .+... +..+..+
T Consensus 2 ~~~ls~n-~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~l~~~~ 79 (362)
T 3goz_A 2 NYKLTLH-PGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGN-SLGFKNSDELVQILAAIP 79 (362)
T ss_dssp EEECCCC-TTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSS-CGGGSCHHHHHHHHHTSC
T ss_pred ccccccc-cchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCC-CCCHHHHHHHHHHHhccC
Confidence 4678888 66654 555566677999999999999875 6678888 9999999999 56554 5567765
Q ss_pred cCCceEecCCCcCcccCCc-c----CcCC-CCcceeCceEeCCCCCCCcccccccccCCceeEEeccCCCCCchhhhhcc
Q 003899 189 KKLRHLKSSNVDSLEEMPK-G----FGKL-TCLLTLGTFVVGKDGGSGLRELKSLTHLQGTLQISKLENVKDVGDACEAQ 262 (788)
Q Consensus 189 ~~L~~L~l~~~~~l~~~p~-~----i~~l-~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~~~~~~~~~~~~~~~~~~ 262 (788)
++|++|++++|. +...+. . +..+ ++|++|++.++..... ........
T Consensus 80 ~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~--------------------------~~~~l~~~ 132 (362)
T 3goz_A 80 ANVTSLNLSGNF-LSYKSSDELVKTLAAIPFTITVLDLGWNDFSSK--------------------------SSSEFKQA 132 (362)
T ss_dssp TTCCEEECCSSC-GGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGS--------------------------CHHHHHHH
T ss_pred CCccEEECcCCc-CChHHHHHHHHHHHhCCCCccEEECcCCcCCcH--------------------------HHHHHHHH
Confidence 999999999999 655443 2 3444 7888888755432110 11111222
Q ss_pred cCCC-cCCceEEEEeecCcccCccchhhhhhhcccCcccc-ccceEEEEeeCCCCCCc-ccCC--CCC-CCeeEEEECCC
Q 003899 263 LNSK-ENLQALLLKWSTRDVQNLDQCEFETHVLSVLKPHQ-DVQELTITGYGGTKFPI-WLGD--SSF-SKLARLELCRC 336 (788)
Q Consensus 263 l~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~~~-~L~~L~l~~~~~~~~p~-~~~~--~~~-~~L~~L~L~~~ 336 (788)
+..+ ++|+.|+++++...- .........+...+ +|+.|++++|.....+. .+.. ... ++|+.|++++|
T Consensus 133 l~~~~~~L~~L~Ls~N~l~~------~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N 206 (362)
T 3goz_A 133 FSNLPASITSLNLRGNDLGI------KSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSAN 206 (362)
T ss_dssp HTTSCTTCCEEECTTSCGGG------SCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTS
T ss_pred HHhCCCceeEEEccCCcCCH------HHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCC
Confidence 3332 467777776665400 00112222233333 67777777765543321 1110 022 46777777777
Q ss_pred CCCC-----CCC-CCC-CCCccEEEecCCC
Q 003899 337 TSTS-----LPS-VGQ-LPFLMELDISGMD 359 (788)
Q Consensus 337 ~~~~-----l~~-l~~-l~~L~~L~l~~~~ 359 (788)
.+.. ++. +.. .++|++|++++|.
T Consensus 207 ~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~ 236 (362)
T 3goz_A 207 LLGLKSYAELAYIFSSIPNHVVSLNLCLNC 236 (362)
T ss_dssp CGGGSCHHHHHHHHHHSCTTCCEEECCSSC
T ss_pred CCChhHHHHHHHHHhcCCCCceEEECcCCC
Confidence 6622 222 223 2467777777764
No 110
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.36 E-value=1.1e-12 Score=130.98 Aligned_cols=102 Identities=23% Similarity=0.242 Sum_probs=71.5
Q ss_pred hCCCCCeeEEEccCCcCcccccccccCCCCCceeeccCCcccccchhhhccccCcEEEccCccchhhchhhhhcccCCce
Q 003899 114 LMNLPRLRVFSLHGYSNIIELPNEIENLKHLRFLNLSRTSIQILPESINSLYNLNTILLEDCYQLKKLCNDMGNLKKLRH 193 (788)
Q Consensus 114 ~~~l~~Lr~L~L~~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~ 193 (788)
+..+++|++|++++| .+..+| .+..+++|++|+|++|.|+.+|. +..+++|++|++++| .+..+|. +.. ++|++
T Consensus 37 ~~~l~~L~~L~l~~n-~i~~l~-~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~~N-~l~~l~~-~~~-~~L~~ 110 (263)
T 1xeu_A 37 QKELSGVQNFNGDNS-NIQSLA-GMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVNRN-RLKNLNG-IPS-ACLSR 110 (263)
T ss_dssp HHHHTTCSEEECTTS-CCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCSS-CCSCCTT-CCC-SSCCE
T ss_pred hhhcCcCcEEECcCC-Ccccch-HHhhCCCCCEEECCCCccCCChh-hccCCCCCEEECCCC-ccCCcCc-ccc-CcccE
Confidence 455677777777777 777776 56777777777777777777766 777777777777777 6666665 333 77777
Q ss_pred EecCCCcCcccCCccCcCCCCcceeCceEe
Q 003899 194 LKSSNVDSLEEMPKGFGKLTCLLTLGTFVV 223 (788)
Q Consensus 194 L~l~~~~~l~~~p~~i~~l~~L~~L~~~~~ 223 (788)
|++++|. +..+| .++.+++|++|++.++
T Consensus 111 L~L~~N~-l~~~~-~l~~l~~L~~L~Ls~N 138 (263)
T 1xeu_A 111 LFLDNNE-LRDTD-SLIHLKNLEILSIRNN 138 (263)
T ss_dssp EECCSSC-CSBSG-GGTTCTTCCEEECTTS
T ss_pred EEccCCc-cCCCh-hhcCcccccEEECCCC
Confidence 7777776 66554 4677777777766443
No 111
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.36 E-value=7.5e-13 Score=139.13 Aligned_cols=96 Identities=22% Similarity=0.312 Sum_probs=59.2
Q ss_pred eEEEccCCcCcccccccccCCCCCceeeccCCcccccchh-hh-ccccCcEEEccCccchhhchh-hhhcccCCceEecC
Q 003899 121 RVFSLHGYSNIIELPNEIENLKHLRFLNLSRTSIQILPES-IN-SLYNLNTILLEDCYQLKKLCN-DMGNLKKLRHLKSS 197 (788)
Q Consensus 121 r~L~L~~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~-i~-~L~~L~~L~L~~~~~l~~lp~-~i~~L~~L~~L~l~ 197 (788)
++++++++ .+..+|..+. ..+++|+|++|.|+.+|.. +. .+++|++|+|++| .+..+|. .+..+++|++|+++
T Consensus 21 ~~l~c~~~-~l~~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N-~i~~i~~~~~~~l~~L~~L~Ls 96 (361)
T 2xot_A 21 NILSCSKQ-QLPNVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHN-HLNFISSEAFVPVPNLRYLDLS 96 (361)
T ss_dssp TEEECCSS-CCSSCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECC
T ss_pred CEEEeCCC-CcCccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCC-cCCccChhhccCCCCCCEEECC
Confidence 45666666 6666665543 2466777777777766433 44 6677777777766 5555553 36667777777777
Q ss_pred CCcCcccCCcc-CcCCCCcceeCce
Q 003899 198 NVDSLEEMPKG-FGKLTCLLTLGTF 221 (788)
Q Consensus 198 ~~~~l~~~p~~-i~~l~~L~~L~~~ 221 (788)
+|. +..+|.. +..+++|++|++.
T Consensus 97 ~N~-l~~~~~~~~~~l~~L~~L~L~ 120 (361)
T 2xot_A 97 SNH-LHTLDEFLFSDLQALEVLLLY 120 (361)
T ss_dssp SSC-CCEECTTTTTTCTTCCEEECC
T ss_pred CCc-CCcCCHHHhCCCcCCCEEECC
Confidence 766 5555543 5666666666553
No 112
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.35 E-value=2.1e-12 Score=124.99 Aligned_cols=95 Identities=22% Similarity=0.396 Sum_probs=63.6
Q ss_pred eEEEccCCcCcccccccccCCCCCceeeccCCcccccc-hhhhccccCcEEEccCccchhhc-hhhhhcccCCceEecCC
Q 003899 121 RVFSLHGYSNIIELPNEIENLKHLRFLNLSRTSIQILP-ESINSLYNLNTILLEDCYQLKKL-CNDMGNLKKLRHLKSSN 198 (788)
Q Consensus 121 r~L~L~~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp-~~i~~L~~L~~L~L~~~~~l~~l-p~~i~~L~~L~~L~l~~ 198 (788)
+.++++++ .++.+|..+. .+|++|+|++|.|+.+| ..+..+++|++|+|++| .+..+ |..+..+++|++|++++
T Consensus 14 ~~v~c~~~-~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N-~i~~~~~~~~~~l~~L~~L~Ls~ 89 (220)
T 2v9t_B 14 NIVDCRGK-GLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNN-QISELAPDAFQGLRSLNSLVLYG 89 (220)
T ss_dssp TEEECTTS-CCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSS-CCCEECTTTTTTCSSCCEEECCS
T ss_pred CEEEcCCC-CcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCC-cCCCcCHHHhhCCcCCCEEECCC
Confidence 45677776 7777776554 56777777777777765 35677777777777777 55554 55577777777777777
Q ss_pred CcCcccCCcc-CcCCCCcceeCc
Q 003899 199 VDSLEEMPKG-FGKLTCLLTLGT 220 (788)
Q Consensus 199 ~~~l~~~p~~-i~~l~~L~~L~~ 220 (788)
|. +..+|.+ +..+++|++|++
T Consensus 90 N~-l~~l~~~~f~~l~~L~~L~L 111 (220)
T 2v9t_B 90 NK-ITELPKSLFEGLFSLQLLLL 111 (220)
T ss_dssp SC-CCCCCTTTTTTCTTCCEEEC
T ss_pred Cc-CCccCHhHccCCCCCCEEEC
Confidence 76 6666654 455555555554
No 113
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.35 E-value=1e-12 Score=122.46 Aligned_cols=132 Identities=16% Similarity=0.152 Sum_probs=107.8
Q ss_pred ccccCCCceeEEEeccCCccccchhhhhHHHHhCCCCCeeEEEccCCcCcccccccccCCCCCceeeccCCcccccchhh
Q 003899 82 QSVCDVEHLRTFLPVNLSNYRINYLAWSVLQMLMNLPRLRVFSLHGYSNIIELPNEIENLKHLRFLNLSRTSIQILPESI 161 (788)
Q Consensus 82 ~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i 161 (788)
..+.++.+|+.|.+.++. + ..++......++|++|++++| .+..+ ..|+.+++|++|++++|.|+.+|..+
T Consensus 13 ~~~~~~~~L~~L~l~~n~------l-~~i~~~~~~~~~L~~L~Ls~N-~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~ 83 (176)
T 1a9n_A 13 AQYTNAVRDRELDLRGYK------I-PVIENLGATLDQFDAIDFSDN-EIRKL-DGFPLLRRLKTLLVNNNRICRIGEGL 83 (176)
T ss_dssp CEEECTTSCEEEECTTSC------C-CSCCCGGGGTTCCSEEECCSS-CCCEE-CCCCCCSSCCEEECCSSCCCEECSCH
T ss_pred HhcCCcCCceEEEeeCCC------C-chhHHhhhcCCCCCEEECCCC-CCCcc-cccccCCCCCEEECCCCcccccCcch
Confidence 456678889999888764 2 123333333449999999999 88888 67899999999999999999987555
Q ss_pred -hccccCcEEEccCccchhhchh--hhhcccCCceEecCCCcCcccCCcc----CcCCCCcceeCceEeC
Q 003899 162 -NSLYNLNTILLEDCYQLKKLCN--DMGNLKKLRHLKSSNVDSLEEMPKG----FGKLTCLLTLGTFVVG 224 (788)
Q Consensus 162 -~~L~~L~~L~L~~~~~l~~lp~--~i~~L~~L~~L~l~~~~~l~~~p~~----i~~l~~L~~L~~~~~~ 224 (788)
+.+++|++|++++| .+..+|. .++.+++|++|++++|. +..+|.. ++.+++|++|++..+.
T Consensus 84 ~~~l~~L~~L~L~~N-~i~~~~~~~~l~~l~~L~~L~l~~N~-i~~~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 84 DQALPDLTELILTNN-SLVELGDLDPLASLKSLTYLCILRNP-VTNKKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp HHHCTTCCEEECCSC-CCCCGGGGGGGGGCTTCCEEECCSSG-GGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred hhcCCCCCEEECCCC-cCCcchhhHhhhcCCCCCEEEecCCC-CCCcHhHHHHHHHHCCccceeCCCcCC
Confidence 89999999999999 7888887 78999999999999998 7788875 8899999999986654
No 114
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.33 E-value=1.5e-12 Score=126.16 Aligned_cols=128 Identities=23% Similarity=0.337 Sum_probs=101.6
Q ss_pred CceeEEEeccCCccccchhhhhHHH-HhCCCCCeeEEEccCCcCcccc-cccccCCCCCceeeccCCcccccchh-hhcc
Q 003899 88 EHLRTFLPVNLSNYRINYLAWSVLQ-MLMNLPRLRVFSLHGYSNIIEL-PNEIENLKHLRFLNLSRTSIQILPES-INSL 164 (788)
Q Consensus 88 ~~Lr~L~~~~~~~~~~~~~~~~~~~-~~~~l~~Lr~L~L~~~~~l~~l-p~~~~~l~~L~~L~L~~~~i~~lp~~-i~~L 164 (788)
++++.|.+.++. + ..++. .|..+++|++|+|++| .+..+ |..|.++++|++|+|++|.|+.+|.. +..+
T Consensus 32 ~~l~~L~l~~n~------i-~~i~~~~~~~l~~L~~L~Ls~N-~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l 103 (220)
T 2v9t_B 32 ETITEIRLEQNT------I-KVIPPGAFSPYKKLRRIDLSNN-QISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGL 103 (220)
T ss_dssp TTCCEEECCSSC------C-CEECTTSSTTCTTCCEEECCSS-CCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTC
T ss_pred cCCCEEECCCCc------C-CCcCHhHhhCCCCCCEEECCCC-cCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCC
Confidence 578888777753 2 23333 7888999999999999 88777 57889999999999999999988755 5789
Q ss_pred ccCcEEEccCccchhhc-hhhhhcccCCceEecCCCcCcccCCcc-CcCCCCcceeCceEeCC
Q 003899 165 YNLNTILLEDCYQLKKL-CNDMGNLKKLRHLKSSNVDSLEEMPKG-FGKLTCLLTLGTFVVGK 225 (788)
Q Consensus 165 ~~L~~L~L~~~~~l~~l-p~~i~~L~~L~~L~l~~~~~l~~~p~~-i~~l~~L~~L~~~~~~~ 225 (788)
++|++|+|++| .+..+ |..+..+++|++|++++|. +..+|.. +..+++|++|++.++..
T Consensus 104 ~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~~ 164 (220)
T 2v9t_B 104 FSLQLLLLNAN-KINCLRVDAFQDLHNLNLLSLYDNK-LQTIAKGTFSPLRAIQTMHLAQNPF 164 (220)
T ss_dssp TTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSCE
T ss_pred CCCCEEECCCC-CCCEeCHHHcCCCCCCCEEECCCCc-CCEECHHHHhCCCCCCEEEeCCCCc
Confidence 99999999998 66666 4558889999999999998 7777765 88888899888865543
No 115
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.33 E-value=2e-12 Score=119.63 Aligned_cols=138 Identities=23% Similarity=0.291 Sum_probs=114.1
Q ss_pred ccCCceeEEEEEccCCccccccccccCCCceeEEEeccCCccccchhhhhHHHHhCCCCCeeEEEccCCcCccc-ccccc
Q 003899 60 KFCQSLRHFSYICGESDGEKRLQSVCDVEHLRTFLPVNLSNYRINYLAWSVLQMLMNLPRLRVFSLHGYSNIIE-LPNEI 138 (788)
Q Consensus 60 ~~~~~~r~lsl~~~~~~~~~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~l~~-lp~~~ 138 (788)
..+..++++.+..+.+........+..+++|+.|.+.++. +.. + ..|..+++|++|++++| .+.. +|..+
T Consensus 21 ~~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~------l~~-~-~~~~~l~~L~~L~Ls~N-~l~~~~~~~~ 91 (168)
T 2ell_A 21 RTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVG------LIS-V-SNLPKLPKLKKLELSEN-RIFGGLDMLA 91 (168)
T ss_dssp SCTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSC------CCC-C-SSCCCCSSCCEEEEESC-CCCSCCCHHH
T ss_pred CCcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCC------CCC-h-hhhccCCCCCEEECcCC-cCchHHHHHH
Confidence 3457899999998876521222345788999999998864 222 2 57899999999999999 8877 77777
Q ss_pred cCCCCCceeeccCCcccccc--hhhhccccCcEEEccCccchhhchh----hhhcccCCceEecCCCcCcccCCcc
Q 003899 139 ENLKHLRFLNLSRTSIQILP--ESINSLYNLNTILLEDCYQLKKLCN----DMGNLKKLRHLKSSNVDSLEEMPKG 208 (788)
Q Consensus 139 ~~l~~L~~L~L~~~~i~~lp--~~i~~L~~L~~L~L~~~~~l~~lp~----~i~~L~~L~~L~l~~~~~l~~~p~~ 208 (788)
..+++|++|++++|.|+.+| ..+..+++|++|++++| .+..+|. .+..+++|++|++++|. ...+|..
T Consensus 92 ~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~~n~-~~~~~~~ 165 (168)
T 2ell_A 92 EKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNC-EVTNLNDYRESVFKLLPQLTYLDGYDRE-DQEAPDS 165 (168)
T ss_dssp HHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSS-GGGTSTTHHHHHHTTCSSCCEETTEETT-SCBCCSS
T ss_pred hhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCC-cCcchHHHHHHHHHhCccCcEecCCCCC-hhhcccc
Confidence 88999999999999999986 78999999999999999 7888886 68999999999999998 7777764
No 116
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.31 E-value=1.3e-12 Score=126.44 Aligned_cols=130 Identities=16% Similarity=0.240 Sum_probs=101.9
Q ss_pred CceeEEEeccCCccccchhhhhHHH-HhCCCCCeeEEEccCCcCccccc-ccccCCCCCceeeccCCcccccc-hhhhcc
Q 003899 88 EHLRTFLPVNLSNYRINYLAWSVLQ-MLMNLPRLRVFSLHGYSNIIELP-NEIENLKHLRFLNLSRTSIQILP-ESINSL 164 (788)
Q Consensus 88 ~~Lr~L~~~~~~~~~~~~~~~~~~~-~~~~l~~Lr~L~L~~~~~l~~lp-~~~~~l~~L~~L~L~~~~i~~lp-~~i~~L 164 (788)
..++.|.+.++. +....+. .|..+++|++|+|++| .+..++ ..|.++.+|++|+|++|.++.+| ..+..+
T Consensus 32 ~~~~~L~L~~N~------l~~~~~~~~~~~l~~L~~L~L~~N-~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l 104 (220)
T 2v70_A 32 QYTAELRLNNNE------FTVLEATGIFKKLPQLRKINFSNN-KITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGL 104 (220)
T ss_dssp TTCSEEECCSSC------CCEECCCCCGGGCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTC
T ss_pred CCCCEEEcCCCc------CCccCchhhhccCCCCCEEECCCC-cCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCC
Confidence 356777777653 2222222 5788999999999999 888886 47899999999999999999885 458889
Q ss_pred ccCcEEEccCccchhhc-hhhhhcccCCceEecCCCcCcccC-CccCcCCCCcceeCceEeCCC
Q 003899 165 YNLNTILLEDCYQLKKL-CNDMGNLKKLRHLKSSNVDSLEEM-PKGFGKLTCLLTLGTFVVGKD 226 (788)
Q Consensus 165 ~~L~~L~L~~~~~l~~l-p~~i~~L~~L~~L~l~~~~~l~~~-p~~i~~l~~L~~L~~~~~~~~ 226 (788)
++|++|+|++| .+..+ |..+..+++|++|++++|. +..+ |..+..+++|++|++.++...
T Consensus 105 ~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 105 ESLKTLMLRSN-RITCVGNDSFIGLSSVRLLSLYDNQ-ITTVAPGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp SSCCEEECTTS-CCCCBCTTSSTTCTTCSEEECTTSC-CCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred cCCCEEECCCC-cCCeECHhHcCCCccCCEEECCCCc-CCEECHHHhcCCCCCCEEEecCcCCc
Confidence 99999999999 66666 5668899999999999998 6666 667889999999988665443
No 117
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.30 E-value=3.5e-12 Score=122.58 Aligned_cols=128 Identities=27% Similarity=0.380 Sum_probs=98.9
Q ss_pred CCceeEEEeccCCccccchhhhhHHH-HhCCCCCeeEEEccCCcCcccccc-cccCCCCCceeeccCCcccccch-hhhc
Q 003899 87 VEHLRTFLPVNLSNYRINYLAWSVLQ-MLMNLPRLRVFSLHGYSNIIELPN-EIENLKHLRFLNLSRTSIQILPE-SINS 163 (788)
Q Consensus 87 ~~~Lr~L~~~~~~~~~~~~~~~~~~~-~~~~l~~Lr~L~L~~~~~l~~lp~-~~~~l~~L~~L~L~~~~i~~lp~-~i~~ 163 (788)
.++++.|.+.++. +. .++. .|..+++|++|++++| .+..+|. .|..+++|++|+|++|.++.+|. .+..
T Consensus 27 ~~~l~~L~l~~n~------l~-~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 98 (208)
T 2o6s_A 27 PAQTTYLDLETNS------LK-SLPNGVFDELTSLTQLYLGGN-KLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDK 98 (208)
T ss_dssp CTTCSEEECCSSC------CC-CCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred CCCCcEEEcCCCc------cC-cCChhhhcccccCcEEECCCC-ccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcC
Confidence 4577888777753 22 3333 6788889999999988 8888874 46888899999999988888864 4688
Q ss_pred cccCcEEEccCccchhhchhh-hhcccCCceEecCCCcCcccCCcc-CcCCCCcceeCceEeC
Q 003899 164 LYNLNTILLEDCYQLKKLCND-MGNLKKLRHLKSSNVDSLEEMPKG-FGKLTCLLTLGTFVVG 224 (788)
Q Consensus 164 L~~L~~L~L~~~~~l~~lp~~-i~~L~~L~~L~l~~~~~l~~~p~~-i~~l~~L~~L~~~~~~ 224 (788)
+++|++|++++| .+..+|.. +..+++|++|++++|. +..+|.. +..+++|++|++.++.
T Consensus 99 l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~ 159 (208)
T 2o6s_A 99 LTQLKELALNTN-QLQSLPDGVFDKLTQLKDLRLYQNQ-LKSVPDGVFDRLTSLQYIWLHDNP 159 (208)
T ss_dssp CTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSCC
T ss_pred ccCCCEEEcCCC-cCcccCHhHhccCCcCCEEECCCCc-cceeCHHHhccCCCccEEEecCCC
Confidence 889999999888 67777665 6888899999998887 6677765 7888888888876553
No 118
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.30 E-value=3.8e-12 Score=123.24 Aligned_cols=132 Identities=14% Similarity=0.101 Sum_probs=111.4
Q ss_pred ccCCceeEEEEEccCCccccccccccCCCceeEEEeccCCccccchhhhhHHH-HhCCCCCeeEEEccCCcCccccc-cc
Q 003899 60 KFCQSLRHFSYICGESDGEKRLQSVCDVEHLRTFLPVNLSNYRINYLAWSVLQ-MLMNLPRLRVFSLHGYSNIIELP-NE 137 (788)
Q Consensus 60 ~~~~~~r~lsl~~~~~~~~~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~-~~~~l~~Lr~L~L~~~~~l~~lp-~~ 137 (788)
.++..++.+.+..+.+........+..+++|+.|.+.++. + ..++. .|..+++|++|+|++| .+..+| ..
T Consensus 29 ~~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~------i-~~i~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~ 100 (220)
T 2v70_A 29 HIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNK------I-TDIEEGAFEGASGVNEILLTSN-RLENVQHKM 100 (220)
T ss_dssp CCCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSC------C-CEECTTTTTTCTTCCEEECCSS-CCCCCCGGG
T ss_pred CCCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCc------C-CEECHHHhCCCCCCCEEECCCC-ccCccCHhH
Confidence 3556788999999877554333457889999999998864 2 23333 8999999999999999 888887 56
Q ss_pred ccCCCCCceeeccCCccccc-chhhhccccCcEEEccCccchhhc-hhhhhcccCCceEecCCCc
Q 003899 138 IENLKHLRFLNLSRTSIQIL-PESINSLYNLNTILLEDCYQLKKL-CNDMGNLKKLRHLKSSNVD 200 (788)
Q Consensus 138 ~~~l~~L~~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~~~l~~l-p~~i~~L~~L~~L~l~~~~ 200 (788)
|.++++|++|+|++|.|+.+ |..+..+++|++|+|++| .+..+ |..+..+++|++|++++|.
T Consensus 101 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~ 164 (220)
T 2v70_A 101 FKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDN-QITTVAPGAFDTLHSLSTLNLLANP 164 (220)
T ss_dssp GTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTS-CCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred hcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCC-cCCEECHHHhcCCCCCCEEEecCcC
Confidence 89999999999999999988 688999999999999999 67776 6679999999999999998
No 119
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.30 E-value=2.8e-12 Score=123.30 Aligned_cols=149 Identities=17% Similarity=0.172 Sum_probs=119.4
Q ss_pred ccCCceeEEEEEccCCccccccccccCCCceeEEEeccCCccccchhhhhHHH-HhCCCCCeeEEEccCCcCcccccc-c
Q 003899 60 KFCQSLRHFSYICGESDGEKRLQSVCDVEHLRTFLPVNLSNYRINYLAWSVLQ-MLMNLPRLRVFSLHGYSNIIELPN-E 137 (788)
Q Consensus 60 ~~~~~~r~lsl~~~~~~~~~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~-~~~~l~~Lr~L~L~~~~~l~~lp~-~ 137 (788)
..+..++.+.+..+.+.... ...+..+++|+.|.+.++. + ..++. .|..+++|++|++++| .+..+|. .
T Consensus 25 ~~~~~l~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~------l-~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~ 95 (208)
T 2o6s_A 25 GIPAQTTYLDLETNSLKSLP-NGVFDELTSLTQLYLGGNK------L-QSLPNGVFNKLTSLTYLNLSTN-QLQSLPNGV 95 (208)
T ss_dssp CCCTTCSEEECCSSCCCCCC-TTTTTTCTTCSEEECCSSC------C-CCCCTTTTTTCTTCCEEECCSS-CCCCCCTTT
T ss_pred CCCCCCcEEEcCCCccCcCC-hhhhcccccCcEEECCCCc------c-CccChhhcCCCCCcCEEECCCC-cCCccCHhH
Confidence 35668999999998765332 2346789999999998864 2 23444 6899999999999999 8988874 5
Q ss_pred ccCCCCCceeeccCCcccccch-hhhccccCcEEEccCccchhhchhh-hhcccCCceEecCCCcCcccCCccCcCCCCc
Q 003899 138 IENLKHLRFLNLSRTSIQILPE-SINSLYNLNTILLEDCYQLKKLCND-MGNLKKLRHLKSSNVDSLEEMPKGFGKLTCL 215 (788)
Q Consensus 138 ~~~l~~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~~lp~~-i~~L~~L~~L~l~~~~~l~~~p~~i~~l~~L 215 (788)
|.++++|++|++++|.++.+|. .+..+++|++|++++| .+..+|.. +..+++|++|++++|... +.+++|
T Consensus 96 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~~-------~~~~~l 167 (208)
T 2o6s_A 96 FDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQN-QLKSVPDGVFDRLTSLQYIWLHDNPWD-------CTCPGI 167 (208)
T ss_dssp TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSCCBC-------CCTTTT
T ss_pred hcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCC-ccceeCHHHhccCCCccEEEecCCCee-------cCCCCH
Confidence 7999999999999999999865 4789999999999999 77778776 789999999999999722 345677
Q ss_pred ceeCceEeCC
Q 003899 216 LTLGTFVVGK 225 (788)
Q Consensus 216 ~~L~~~~~~~ 225 (788)
++|++..+..
T Consensus 168 ~~L~~~~n~~ 177 (208)
T 2o6s_A 168 RYLSEWINKH 177 (208)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHhC
Confidence 7777655443
No 120
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.28 E-value=2.3e-12 Score=116.40 Aligned_cols=108 Identities=18% Similarity=0.228 Sum_probs=95.2
Q ss_pred hCCCCCeeEEEccCCcCcc--cccccccCCCCCceeeccCCcccccchhhhccccCcEEEccCccchhh-chhhhhcccC
Q 003899 114 LMNLPRLRVFSLHGYSNII--ELPNEIENLKHLRFLNLSRTSIQILPESINSLYNLNTILLEDCYQLKK-LCNDMGNLKK 190 (788)
Q Consensus 114 ~~~l~~Lr~L~L~~~~~l~--~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~-lp~~i~~L~~ 190 (788)
....++|+.|++++| .+. .+|..+..+++|++|++++|.++.+ ..++.+++|++|++++| .+.. +|..++.+++
T Consensus 13 ~~~~~~l~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~ 89 (149)
T 2je0_A 13 NRTPSDVKELVLDNS-RSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDN-RVSGGLEVLAEKCPN 89 (149)
T ss_dssp TCCGGGCSEEECTTC-BCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSS-CCCSCTHHHHHHCTT
T ss_pred cCCCccCeEEEccCC-cCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCC-cccchHHHHhhhCCC
Confidence 445688999999999 787 8898889999999999999999988 77999999999999999 6666 8887888999
Q ss_pred CceEecCCCcCcccCC--ccCcCCCCcceeCceEeCC
Q 003899 191 LRHLKSSNVDSLEEMP--KGFGKLTCLLTLGTFVVGK 225 (788)
Q Consensus 191 L~~L~l~~~~~l~~~p--~~i~~l~~L~~L~~~~~~~ 225 (788)
|++|++++|. +..+| ..++.+++|++|++.++..
T Consensus 90 L~~L~ls~N~-i~~~~~~~~~~~l~~L~~L~l~~N~l 125 (149)
T 2je0_A 90 LTHLNLSGNK-IKDLSTIEPLKKLENLKSLDLFNCEV 125 (149)
T ss_dssp CCEEECTTSC-CCSHHHHGGGGGCTTCCEEECTTCGG
T ss_pred CCEEECCCCc-CCChHHHHHHhhCCCCCEEeCcCCcc
Confidence 9999999999 77765 7799999999999866544
No 121
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.27 E-value=3.9e-11 Score=132.07 Aligned_cols=142 Identities=24% Similarity=0.234 Sum_probs=81.5
Q ss_pred CCCcceEEEecCCCCcccCCCCCCCCcccEEEecccccccccccccCccceEeccCCCCCCCCCCCCCCCCccEEEEecc
Q 003899 584 LRHLQKIWISKCPNLESFPEEGLPSAKLTELMIWRCENLKALPNSMSSLLRLGIIGCPSLESFPEDGFPTNLQSLEVRDL 663 (788)
Q Consensus 584 l~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~~ 663 (788)
+++|+.|++++| .++.+|. +.. +|++|++++|. ++.+|..+++|+.|+++++ .++.+|. .+++|+.|++++|
T Consensus 99 l~~L~~L~Ls~N-~l~~ip~-l~~--~L~~L~Ls~N~-l~~lp~~l~~L~~L~Ls~N-~l~~lp~--~l~~L~~L~Ls~N 170 (571)
T 3cvr_A 99 PASLEYLDACDN-RLSTLPE-LPA--SLKHLDVDNNQ-LTMLPELPALLEYINADNN-QLTMLPE--LPTSLEVLSVRNN 170 (571)
T ss_dssp CTTCCEEECCSS-CCSCCCC-CCT--TCCEEECCSSC-CSCCCCCCTTCCEEECCSS-CCSCCCC--CCTTCCEEECCSS
T ss_pred cCCCCEEEccCC-CCCCcch-hhc--CCCEEECCCCc-CCCCCCcCccccEEeCCCC-ccCcCCC--cCCCcCEEECCCC
Confidence 455556666553 4444554 222 56666666543 3334444446666666653 3554554 3456666666665
Q ss_pred CCCCcccccccCCCCCccEEEEcCCCCCcccCCCCCCCC-------CeEecCCCCCcccchhhcCCCCCCCceecccCCC
Q 003899 664 KITKPLLEWGLNRFTSLRNLSIGGGYPDLLSSPPFPASL-------TELWISDMPDLECLSSISENLTSLEFLYLIDCPK 736 (788)
Q Consensus 664 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~L-------~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~ 736 (788)
.... ++. +. ++|+.|++++ +.+..+|....+| +.|+|++ |.++.+|..+..+++|+.|++++|+-
T Consensus 171 ~L~~-lp~--l~--~~L~~L~Ls~--N~L~~lp~~~~~L~~~~~~L~~L~Ls~-N~l~~lp~~l~~l~~L~~L~L~~N~l 242 (571)
T 3cvr_A 171 QLTF-LPE--LP--ESLEALDVST--NLLESLPAVPVRNHHSEETEIFFRCRE-NRITHIPENILSLDPTCTIILEDNPL 242 (571)
T ss_dssp CCSC-CCC--CC--TTCCEEECCS--SCCSSCCCCC--------CCEEEECCS-SCCCCCCGGGGGSCTTEEEECCSSSC
T ss_pred CCCC-cch--hh--CCCCEEECcC--CCCCchhhHHHhhhcccccceEEecCC-CcceecCHHHhcCCCCCEEEeeCCcC
Confidence 4333 333 33 6677777766 4555666533356 7788887 57788887777788888888888854
Q ss_pred CcccC
Q 003899 737 LKYFP 741 (788)
Q Consensus 737 l~~l~ 741 (788)
-..+|
T Consensus 243 ~~~~p 247 (571)
T 3cvr_A 243 SSRIR 247 (571)
T ss_dssp CHHHH
T ss_pred CCcCH
Confidence 33333
No 122
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.27 E-value=2.7e-12 Score=134.79 Aligned_cols=110 Identities=20% Similarity=0.261 Sum_probs=65.5
Q ss_pred HhC-CCCCeeEEEccCCcCccccc-ccccCCCCCceeeccCCcccccc-hhhhccccCcEEEccCccchhhc-hhhhhcc
Q 003899 113 MLM-NLPRLRVFSLHGYSNIIELP-NEIENLKHLRFLNLSRTSIQILP-ESINSLYNLNTILLEDCYQLKKL-CNDMGNL 188 (788)
Q Consensus 113 ~~~-~l~~Lr~L~L~~~~~l~~lp-~~~~~l~~L~~L~L~~~~i~~lp-~~i~~L~~L~~L~L~~~~~l~~l-p~~i~~L 188 (788)
.|. .+++|++|+|++| .+..++ ..|.++++|++|+|++|.|+.+| ..|..+.+|++|+|++| .+..+ |..+..+
T Consensus 58 ~~~~~l~~L~~L~L~~N-~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~i~~~~~~~~~~l 135 (361)
T 2xot_A 58 WTPTRLTNLHSLLLSHN-HLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNN-HIVVVDRNAFEDM 135 (361)
T ss_dssp SSSSCCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTTTC
T ss_pred hhhhcccccCEEECCCC-cCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCC-cccEECHHHhCCc
Confidence 444 6666666666666 666654 44666666666666666666654 34566666666666666 44444 3346666
Q ss_pred cCCceEecCCCcCcccCCccC----cCCCCcceeCceEeCC
Q 003899 189 KKLRHLKSSNVDSLEEMPKGF----GKLTCLLTLGTFVVGK 225 (788)
Q Consensus 189 ~~L~~L~l~~~~~l~~~p~~i----~~l~~L~~L~~~~~~~ 225 (788)
++|++|++++|. +..+|..+ ..+++|++|++.++..
T Consensus 136 ~~L~~L~L~~N~-l~~l~~~~~~~~~~l~~L~~L~L~~N~l 175 (361)
T 2xot_A 136 AQLQKLYLSQNQ-ISRFPVELIKDGNKLPKLMLLDLSSNKL 175 (361)
T ss_dssp TTCCEEECCSSC-CCSCCGGGTC----CTTCCEEECCSSCC
T ss_pred ccCCEEECCCCc-CCeeCHHHhcCcccCCcCCEEECCCCCC
Confidence 666666666666 55666552 4566666666655443
No 123
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.23 E-value=1.6e-11 Score=115.82 Aligned_cols=104 Identities=28% Similarity=0.426 Sum_probs=82.3
Q ss_pred CCeeEEEccCCcCcccccccccCCCCCceeeccCCcccccc-hhhhccccCcEEEccCccchhhchh-hhhcccCCceEe
Q 003899 118 PRLRVFSLHGYSNIIELPNEIENLKHLRFLNLSRTSIQILP-ESINSLYNLNTILLEDCYQLKKLCN-DMGNLKKLRHLK 195 (788)
Q Consensus 118 ~~Lr~L~L~~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp-~~i~~L~~L~~L~L~~~~~l~~lp~-~i~~L~~L~~L~ 195 (788)
++|++|++++| .+..+|..|.++.+|++|+|++|.|+.++ ..|..+++|++|+|++| .+..+|. .+..+++|++|+
T Consensus 31 ~~l~~L~L~~n-~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N-~l~~i~~~~f~~l~~L~~L~ 108 (193)
T 2wfh_A 31 RDVTELYLDGN-QFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN-RLRCIPPRTFDGLKSLRLLS 108 (193)
T ss_dssp TTCCEEECCSS-CCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCBCCTTTTTTCTTCCEEE
T ss_pred CCCCEEECCCC-cCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC-ccCEeCHHHhCCCCCCCEEE
Confidence 47888888888 78888888888888888888888888774 56888888888888888 6666655 478888888888
Q ss_pred cCCCcCcccCCcc-CcCCCCcceeCceEeC
Q 003899 196 SSNVDSLEEMPKG-FGKLTCLLTLGTFVVG 224 (788)
Q Consensus 196 l~~~~~l~~~p~~-i~~l~~L~~L~~~~~~ 224 (788)
+++|. +..+|.+ +..+++|++|++.++.
T Consensus 109 L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~ 137 (193)
T 2wfh_A 109 LHGND-ISVVPEGAFNDLSALSHLAIGANP 137 (193)
T ss_dssp CCSSC-CCBCCTTTTTTCTTCCEEECCSSC
T ss_pred CCCCC-CCeeChhhhhcCccccEEEeCCCC
Confidence 88888 7777765 7788888888775554
No 124
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.21 E-value=1e-11 Score=115.62 Aligned_cols=107 Identities=22% Similarity=0.305 Sum_probs=94.2
Q ss_pred HhCCCCCeeEEEccCCcCcccccccccCCC-CCceeeccCCcccccchhhhccccCcEEEccCccchhhchhhh-hcccC
Q 003899 113 MLMNLPRLRVFSLHGYSNIIELPNEIENLK-HLRFLNLSRTSIQILPESINSLYNLNTILLEDCYQLKKLCNDM-GNLKK 190 (788)
Q Consensus 113 ~~~~l~~Lr~L~L~~~~~l~~lp~~~~~l~-~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i-~~L~~ 190 (788)
.+..+.+|++|++++| .+..+|. +..+. +|++|++++|.|+.+ ..++.+++|++|++++| .+..+|..+ +.+++
T Consensus 14 ~~~~~~~L~~L~l~~n-~l~~i~~-~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~ 89 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGY-KIPVIEN-LGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNN-RICRIGEGLDQALPD 89 (176)
T ss_dssp EEECTTSCEEEECTTS-CCCSCCC-GGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSS-CCCEECSCHHHHCTT
T ss_pred hcCCcCCceEEEeeCC-CCchhHH-hhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCC-cccccCcchhhcCCC
Confidence 5778999999999999 8988864 55555 999999999999988 67999999999999999 788888765 99999
Q ss_pred CceEecCCCcCcccCCc--cCcCCCCcceeCceEeC
Q 003899 191 LRHLKSSNVDSLEEMPK--GFGKLTCLLTLGTFVVG 224 (788)
Q Consensus 191 L~~L~l~~~~~l~~~p~--~i~~l~~L~~L~~~~~~ 224 (788)
|++|++++|. +..+|. .++.+++|++|++.++.
T Consensus 90 L~~L~L~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~ 124 (176)
T 1a9n_A 90 LTELILTNNS-LVELGDLDPLASLKSLTYLCILRNP 124 (176)
T ss_dssp CCEEECCSCC-CCCGGGGGGGGGCTTCCEEECCSSG
T ss_pred CCEEECCCCc-CCcchhhHhhhcCCCCCEEEecCCC
Confidence 9999999999 888887 78999999999886654
No 125
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.20 E-value=1.3e-11 Score=116.69 Aligned_cols=106 Identities=19% Similarity=0.270 Sum_probs=81.7
Q ss_pred CeeEEEccCCcCcccccc--cccCCCCCceeeccCCccccc-chhhhccccCcEEEccCccchhhchhh-hhcccCCceE
Q 003899 119 RLRVFSLHGYSNIIELPN--EIENLKHLRFLNLSRTSIQIL-PESINSLYNLNTILLEDCYQLKKLCND-MGNLKKLRHL 194 (788)
Q Consensus 119 ~Lr~L~L~~~~~l~~lp~--~~~~l~~L~~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~~~l~~lp~~-i~~L~~L~~L 194 (788)
+|++|++++| .+..++. .|+.+++|++|+|++|.|+.+ |..+..+++|++|+|++| .+..+|.. +..+++|++|
T Consensus 30 ~l~~L~l~~n-~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L 107 (192)
T 1w8a_A 30 HTTELLLNDN-ELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN-KIKEISNKMFLGLHQLKTL 107 (192)
T ss_dssp TCSEEECCSC-CCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC-CCCEECSSSSTTCTTCCEE
T ss_pred CCCEEECCCC-cCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCC-cCCccCHHHhcCCCCCCEE
Confidence 7888888888 7887764 378888888888888888877 677888888888888888 66666554 7888888888
Q ss_pred ecCCCcCcccCCccCcCCCCcceeCceEeCCC
Q 003899 195 KSSNVDSLEEMPKGFGKLTCLLTLGTFVVGKD 226 (788)
Q Consensus 195 ~l~~~~~l~~~p~~i~~l~~L~~L~~~~~~~~ 226 (788)
++++|......|..++.+++|++|++.++...
T Consensus 108 ~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 108 NLYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp ECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred ECCCCcCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence 88888833344666888888888887655443
No 126
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.19 E-value=1.8e-11 Score=135.67 Aligned_cols=104 Identities=22% Similarity=0.261 Sum_probs=96.3
Q ss_pred CeeEEEccCCcCcccccccccCCCCCceeeccCCcccccchhhhccccCcEEEccCccchhhchhhhhcccCCceEecCC
Q 003899 119 RLRVFSLHGYSNIIELPNEIENLKHLRFLNLSRTSIQILPESINSLYNLNTILLEDCYQLKKLCNDMGNLKKLRHLKSSN 198 (788)
Q Consensus 119 ~Lr~L~L~~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~ 198 (788)
.|++|+|++| .++.+|. |+.+++|++|+|++|.|+.+|..++.+++|++|+|++| .+..+| .++.+++|++|++++
T Consensus 442 ~L~~L~Ls~n-~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N-~l~~lp-~l~~l~~L~~L~Ls~ 517 (567)
T 1dce_A 442 DVRVLHLAHK-DLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDN-ALENVD-GVANLPRLQELLLCN 517 (567)
T ss_dssp TCSEEECTTS-CCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSS-CCCCCG-GGTTCSSCCEEECCS
T ss_pred CceEEEecCC-CCCCCcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCC-CCCCCc-ccCCCCCCcEEECCC
Confidence 5999999999 9999987 99999999999999999999999999999999999999 888899 799999999999999
Q ss_pred CcCcccC--CccCcCCCCcceeCceEeCCCC
Q 003899 199 VDSLEEM--PKGFGKLTCLLTLGTFVVGKDG 227 (788)
Q Consensus 199 ~~~l~~~--p~~i~~l~~L~~L~~~~~~~~~ 227 (788)
|. +..+ |..++.+++|++|++.++...+
T Consensus 518 N~-l~~~~~p~~l~~l~~L~~L~L~~N~l~~ 547 (567)
T 1dce_A 518 NR-LQQSAAIQPLVSCPRLVLLNLQGNSLCQ 547 (567)
T ss_dssp SC-CCSSSTTGGGGGCTTCCEEECTTSGGGG
T ss_pred CC-CCCCCCcHHHhcCCCCCEEEecCCcCCC
Confidence 99 7777 8889999999999997776544
No 127
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.16 E-value=3e-11 Score=133.88 Aligned_cols=134 Identities=19% Similarity=0.255 Sum_probs=104.4
Q ss_pred hhHHHHhCCCCCeeEEE-ccCCcCcccccc------cccC--CCCCceeeccCCcccccchhhhccccCcEEEccCccch
Q 003899 108 WSVLQMLMNLPRLRVFS-LHGYSNIIELPN------EIEN--LKHLRFLNLSRTSIQILPESINSLYNLNTILLEDCYQL 178 (788)
Q Consensus 108 ~~~~~~~~~l~~Lr~L~-L~~~~~l~~lp~------~~~~--l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l 178 (788)
...|..+..+++|+.|+ ++.| .+..++. .+.. ...|++|+|++|.|+.+|. ++.+++|++|+|++| .+
T Consensus 399 ~~~~~~l~~l~~L~~L~~l~~n-~~~~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N-~l 475 (567)
T 1dce_A 399 LYEKETLQYFSTLKAVDPMRAA-YLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHN-RL 475 (567)
T ss_dssp GGHHHHHHHHHHHHHHCGGGHH-HHHHHHHHHHHHHHHHHHHHTTCSEEECTTSCCSSCCC-GGGGTTCCEEECCSS-CC
T ss_pred cCCHHHHHHHHhcccCcchhhc-ccchhhhhhhhcccccccCccCceEEEecCCCCCCCcC-ccccccCcEeecCcc-cc
Confidence 34455788888999998 5555 4433331 1111 1359999999999999997 999999999999999 88
Q ss_pred hhchhhhhcccCCceEecCCCcCcccCCccCcCCCCcceeCceEeCCCCCCCcccccccccCCceeEEe
Q 003899 179 KKLCNDMGNLKKLRHLKSSNVDSLEEMPKGFGKLTCLLTLGTFVVGKDGGSGLRELKSLTHLQGTLQIS 247 (788)
Q Consensus 179 ~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~~~ 247 (788)
..+|..++.+++|++|++++|. +..+| .++.+++|++|++.++...+......+..++.|+ .+.+.
T Consensus 476 ~~lp~~~~~l~~L~~L~Ls~N~-l~~lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~-~L~L~ 541 (567)
T 1dce_A 476 RALPPALAALRCLEVLQASDNA-LENVD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLV-LLNLQ 541 (567)
T ss_dssp CCCCGGGGGCTTCCEEECCSSC-CCCCG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCC-EEECT
T ss_pred cccchhhhcCCCCCEEECCCCC-CCCCc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCC-EEEec
Confidence 8999999999999999999999 88898 8999999999999887765532245566666666 55554
No 128
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.15 E-value=8.2e-11 Score=111.03 Aligned_cols=100 Identities=22% Similarity=0.289 Sum_probs=88.2
Q ss_pred eEEEccCCcCcccccccccCCCCCceeeccCCcccccchhhhccccCcEEEccCccchhhchh-hhhcccCCceEecCCC
Q 003899 121 RVFSLHGYSNIIELPNEIENLKHLRFLNLSRTSIQILPESINSLYNLNTILLEDCYQLKKLCN-DMGNLKKLRHLKSSNV 199 (788)
Q Consensus 121 r~L~L~~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~-~i~~L~~L~~L~l~~~ 199 (788)
++++++++ .+..+|..+. .+|++|+|++|.|+.+|..+..+++|++|++++| .+..++. .|..+++|++|++++|
T Consensus 13 ~~l~~~~~-~l~~ip~~~~--~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N-~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 13 TVVRCSNK-GLKVLPKGIP--RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNN-RISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp TEEECTTS-CCSSCCSCCC--TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEcCCC-CCCcCCCCCC--CCCCEEECCCCcCchhHHHhhcccCCCEEECCCC-cCCEeCHhHccCCCCCCEEECCCC
Confidence 57899999 9999997664 5899999999999999999999999999999999 7777765 4899999999999999
Q ss_pred cCcccCCc-cCcCCCCcceeCceEeCC
Q 003899 200 DSLEEMPK-GFGKLTCLLTLGTFVVGK 225 (788)
Q Consensus 200 ~~l~~~p~-~i~~l~~L~~L~~~~~~~ 225 (788)
. +..+|. .++.+++|++|++.++..
T Consensus 89 ~-l~~i~~~~f~~l~~L~~L~L~~N~l 114 (193)
T 2wfh_A 89 R-LRCIPPRTFDGLKSLRLLSLHGNDI 114 (193)
T ss_dssp C-CCBCCTTTTTTCTTCCEEECCSSCC
T ss_pred c-cCEeCHHHhCCCCCCCEEECCCCCC
Confidence 9 777775 599999999999866543
No 129
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.13 E-value=8.8e-11 Score=108.63 Aligned_cols=99 Identities=20% Similarity=0.365 Sum_probs=60.0
Q ss_pred eEEEccCCcCcccccccccCCCCCceeeccCCccccc-chhhhccccCcEEEccCccchhhchhh-hhcccCCceEecCC
Q 003899 121 RVFSLHGYSNIIELPNEIENLKHLRFLNLSRTSIQIL-PESINSLYNLNTILLEDCYQLKKLCND-MGNLKKLRHLKSSN 198 (788)
Q Consensus 121 r~L~L~~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~~~l~~lp~~-i~~L~~L~~L~l~~ 198 (788)
++++++++ .+..+|..+. .+|++|+|++|.|+.+ |..++.+++|++|+|++| .+..+|.. +.++++|++|++++
T Consensus 15 ~~l~~~~n-~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 15 TLVNCQNI-RLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSN-KLTAIPTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp SEEECCSS-CCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCS
T ss_pred cEEEeCCC-CCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCC-CCCccChhHhCCcchhhEEECCC
Confidence 45666666 6666665443 5666666666666655 445666666666666666 55556554 35666666666666
Q ss_pred CcCcccCCcc-CcCCCCcceeCceEeC
Q 003899 199 VDSLEEMPKG-FGKLTCLLTLGTFVVG 224 (788)
Q Consensus 199 ~~~l~~~p~~-i~~l~~L~~L~~~~~~ 224 (788)
|. +..+|.. ++.+++|++|++.++.
T Consensus 91 N~-l~~l~~~~~~~l~~L~~L~L~~N~ 116 (174)
T 2r9u_A 91 NH-LKSIPRGAFDNLKSLTHIYLYNNP 116 (174)
T ss_dssp SC-CCCCCTTTTTTCTTCSEEECCSSC
T ss_pred Cc-cceeCHHHhccccCCCEEEeCCCC
Confidence 66 5555554 6666666666665443
No 130
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.12 E-value=9.9e-11 Score=107.96 Aligned_cols=101 Identities=23% Similarity=0.329 Sum_probs=74.8
Q ss_pred eeEEEccCCcCcccccccccCCCCCceeeccCCccccc-chhhhccccCcEEEccCccchhhchhh-hhcccCCceEecC
Q 003899 120 LRVFSLHGYSNIIELPNEIENLKHLRFLNLSRTSIQIL-PESINSLYNLNTILLEDCYQLKKLCND-MGNLKKLRHLKSS 197 (788)
Q Consensus 120 Lr~L~L~~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~~~l~~lp~~-i~~L~~L~~L~l~ 197 (788)
.+++++++| .++.+|..+. .+|++|+|++|.|+.+ |..+..+++|++|+|++| .+..+|.. +..+++|++|+++
T Consensus 11 ~~~l~~s~n-~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L~ 86 (170)
T 3g39_A 11 GTTVDCSGK-SLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNN-QLTVLPAGVFDKLTQLTQLSLN 86 (170)
T ss_dssp TTEEECTTS-CCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECC
T ss_pred CCEEEeCCC-CcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCC-CcCccChhhccCCCCCCEEECC
Confidence 357778877 7777776553 6788888888888777 566777888888888887 67677665 5778888888888
Q ss_pred CCcCcccCCcc-CcCCCCcceeCceEeCC
Q 003899 198 NVDSLEEMPKG-FGKLTCLLTLGTFVVGK 225 (788)
Q Consensus 198 ~~~~l~~~p~~-i~~l~~L~~L~~~~~~~ 225 (788)
+|. +..+|.. ++.+++|++|++.++..
T Consensus 87 ~N~-l~~~~~~~~~~l~~L~~L~L~~N~~ 114 (170)
T 3g39_A 87 DNQ-LKSIPRGAFDNLKSLTHIWLLNNPW 114 (170)
T ss_dssp SSC-CCCCCTTTTTTCTTCCEEECCSSCB
T ss_pred CCc-cCEeCHHHhcCCCCCCEEEeCCCCC
Confidence 887 6677665 77788888887766544
No 131
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.11 E-value=1.4e-10 Score=109.51 Aligned_cols=100 Identities=20% Similarity=0.252 Sum_probs=86.8
Q ss_pred eEEEccCCcCcccccccccCCCCCceeeccCCcccccchh--hhccccCcEEEccCccchhhc-hhhhhcccCCceEecC
Q 003899 121 RVFSLHGYSNIIELPNEIENLKHLRFLNLSRTSIQILPES--INSLYNLNTILLEDCYQLKKL-CNDMGNLKKLRHLKSS 197 (788)
Q Consensus 121 r~L~L~~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~--i~~L~~L~~L~L~~~~~l~~l-p~~i~~L~~L~~L~l~ 197 (788)
++++++++ .++.+|..+.. +|++|++++|.|..+|.. ++.+++|++|+|++| .+..+ |..+..+++|++|+++
T Consensus 11 ~~l~~s~~-~l~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls 86 (192)
T 1w8a_A 11 TTVDCTGR-GLKEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRN-QLTGIEPNAFEGASHIQELQLG 86 (192)
T ss_dssp TEEECTTS-CCSSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSS-CCCCBCTTTTTTCTTCCEEECC
T ss_pred CEEEcCCC-CcCcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCC-CCCCcCHhHcCCcccCCEEECC
Confidence 78999999 99999987754 999999999999999753 899999999999999 66666 6779999999999999
Q ss_pred CCcCcccCCcc-CcCCCCcceeCceEeCC
Q 003899 198 NVDSLEEMPKG-FGKLTCLLTLGTFVVGK 225 (788)
Q Consensus 198 ~~~~l~~~p~~-i~~l~~L~~L~~~~~~~ 225 (788)
+|. +..++.. ++.+++|++|++.++..
T Consensus 87 ~N~-l~~~~~~~~~~l~~L~~L~L~~N~l 114 (192)
T 1w8a_A 87 ENK-IKEISNKMFLGLHQLKTLNLYDNQI 114 (192)
T ss_dssp SCC-CCEECSSSSTTCTTCCEEECCSSCC
T ss_pred CCc-CCccCHHHhcCCCCCCEEECCCCcC
Confidence 999 7666654 89999999999866543
No 132
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.10 E-value=1.8e-10 Score=107.37 Aligned_cols=104 Identities=27% Similarity=0.440 Sum_probs=73.0
Q ss_pred CCeeEEEccCCcCccccc-ccccCCCCCceeeccCCcccccch-hhhccccCcEEEccCccchhhchhh-hhcccCCceE
Q 003899 118 PRLRVFSLHGYSNIIELP-NEIENLKHLRFLNLSRTSIQILPE-SINSLYNLNTILLEDCYQLKKLCND-MGNLKKLRHL 194 (788)
Q Consensus 118 ~~Lr~L~L~~~~~l~~lp-~~~~~l~~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~~lp~~-i~~L~~L~~L 194 (788)
++|++|++++| .+..+| ..|+.+++|++|++++|.++.+|. .++.+++|++|++++| .+..+|.. +..+++|++|
T Consensus 28 ~~l~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L 105 (177)
T 2o6r_A 28 SSATRLELESN-KLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN-KLQSLPNGVFDKLTQLKEL 105 (177)
T ss_dssp TTCSEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEE
T ss_pred CCCcEEEeCCC-cccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC-CccccCHHHhhCCcccCEE
Confidence 56777777777 676666 345777777777777777777754 3577777777777777 66666654 5777777777
Q ss_pred ecCCCcCcccCCcc-CcCCCCcceeCceEeC
Q 003899 195 KSSNVDSLEEMPKG-FGKLTCLLTLGTFVVG 224 (788)
Q Consensus 195 ~l~~~~~l~~~p~~-i~~l~~L~~L~~~~~~ 224 (788)
++++|. +..+|.. +..+++|++|++.++.
T Consensus 106 ~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~ 135 (177)
T 2o6r_A 106 ALDTNQ-LKSVPDGIFDRLTSLQKIWLHTNP 135 (177)
T ss_dssp ECCSSC-CSCCCTTTTTTCTTCCEEECCSSC
T ss_pred ECcCCc-ceEeCHHHhcCCcccCEEEecCCC
Confidence 777776 6666665 4667777777765543
No 133
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.10 E-value=3.1e-12 Score=121.73 Aligned_cols=110 Identities=21% Similarity=0.216 Sum_probs=91.8
Q ss_pred hHHHHhCCCCCeeEEEccCCcCcccccccccCCCCCceeeccCCcccccchhhhccccCcEEEccCccchhhchhhhhcc
Q 003899 109 SVLQMLMNLPRLRVFSLHGYSNIIELPNEIENLKHLRFLNLSRTSIQILPESINSLYNLNTILLEDCYQLKKLCNDMGNL 188 (788)
Q Consensus 109 ~~~~~~~~l~~Lr~L~L~~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L 188 (788)
.+|..|..+++|++|++++| .+..+| .+.++++|++|++++|.++.+|..+..+++|++|++++| .+..+| .++.+
T Consensus 39 ~l~~~~~~l~~L~~L~ls~n-~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N-~l~~l~-~~~~l 114 (198)
T 1ds9_A 39 KMDATLSTLKACKHLALSTN-NIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYN-QIASLS-GIEKL 114 (198)
T ss_dssp CCHHHHHHTTTCSEEECSEE-EESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEE-ECCCHH-HHHHH
T ss_pred hhhHHHhcCCCCCEEECCCC-CCcccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCC-cCCcCC-ccccC
Confidence 44557888899999999998 888888 888899999999999999988888888899999999998 777787 58889
Q ss_pred cCCceEecCCCcCcccCCc--cCcCCCCcceeCceEe
Q 003899 189 KKLRHLKSSNVDSLEEMPK--GFGKLTCLLTLGTFVV 223 (788)
Q Consensus 189 ~~L~~L~l~~~~~l~~~p~--~i~~l~~L~~L~~~~~ 223 (788)
++|++|++++|. +..+|. .+..+++|++|++.++
T Consensus 115 ~~L~~L~l~~N~-i~~~~~~~~l~~l~~L~~L~l~~N 150 (198)
T 1ds9_A 115 VNLRVLYMSNNK-ITNWGEIDKLAALDKLEDLLLAGN 150 (198)
T ss_dssp HHSSEEEESEEE-CCCHHHHHHHTTTTTCSEEEECSC
T ss_pred CCCCEEECCCCc-CCchhHHHHHhcCCCCCEEEecCC
Confidence 999999999988 776654 5788888888887544
No 134
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.09 E-value=2.4e-11 Score=139.10 Aligned_cols=122 Identities=25% Similarity=0.347 Sum_probs=103.2
Q ss_pred ccccCCCceeEEEeccCCccccchhhhhHHHHhCCCCCeeEEEccCCcCcccccccccCCCCCceeeccCCcccccchhh
Q 003899 82 QSVCDVEHLRTFLPVNLSNYRINYLAWSVLQMLMNLPRLRVFSLHGYSNIIELPNEIENLKHLRFLNLSRTSIQILPESI 161 (788)
Q Consensus 82 ~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i 161 (788)
..+..++.|+.|.+.++. + ..+|..+..+++|++|+|++| .+..+|..|++|.+|++|+|++|.|+.+|..|
T Consensus 218 ~~~~~l~~L~~L~Ls~n~------l-~~l~~~~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~ 289 (727)
T 4b8c_D 218 DSKYDDQLWHALDLSNLQ------I-FNISANIFKYDFLTRLYLNGN-SLTELPAEIKNLSNLRVLDLSHNRLTSLPAEL 289 (727)
T ss_dssp ----CCCCCCEEECTTSC------C-SCCCGGGGGCCSCSCCBCTTS-CCSCCCGGGGGGTTCCEEECTTSCCSSCCSSG
T ss_pred hhhccCCCCcEEECCCCC------C-CCCChhhcCCCCCCEEEeeCC-cCcccChhhhCCCCCCEEeCcCCcCCccChhh
Confidence 456788999999998864 2 355655558999999999999 89999999999999999999999999999999
Q ss_pred hccccCcEEEccCccchhhchhhhhcccCCceEecCCCcCcccCCccCcCC
Q 003899 162 NSLYNLNTILLEDCYQLKKLCNDMGNLKKLRHLKSSNVDSLEEMPKGFGKL 212 (788)
Q Consensus 162 ~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~i~~l 212 (788)
+.|++|++|+|++| .+..+|..|+.|++|++|++++|.....+|..+..+
T Consensus 290 ~~l~~L~~L~L~~N-~l~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~ 339 (727)
T 4b8c_D 290 GSCFQLKYFYFFDN-MVTTLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEK 339 (727)
T ss_dssp GGGTTCSEEECCSS-CCCCCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHH
T ss_pred cCCCCCCEEECCCC-CCCccChhhhcCCCccEEeCCCCccCCCChHHHhhc
Confidence 99999999999999 889999999999999999999999444555555443
No 135
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.08 E-value=7.3e-10 Score=114.70 Aligned_cols=120 Identities=9% Similarity=0.169 Sum_probs=76.5
Q ss_pred CCceeEEEeccCCccccchhhhhHHHHhCC-CCCeeEEEccCCcCcccccccccCCCCCceeeccCCcccccc-hhhhc-
Q 003899 87 VEHLRTFLPVNLSNYRINYLAWSVLQMLMN-LPRLRVFSLHGYSNIIELPNEIENLKHLRFLNLSRTSIQILP-ESINS- 163 (788)
Q Consensus 87 ~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~-l~~Lr~L~L~~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp-~~i~~- 163 (788)
..+++.|.+.+.- .......+.. +++|++|||++| .+..+...-+.+..++++.+..+ .+| ..|..
T Consensus 24 ~~~l~~L~l~g~i-------~~~~~~~l~~~l~~L~~LdLs~n-~i~~~~~~~~~~~~~~~~~~~~~---~I~~~aF~~~ 92 (329)
T 3sb4_A 24 ANSITHLTLTGKL-------NAEDFRHLRDEFPSLKVLDISNA-EIKMYSGKAGTYPNGKFYIYMAN---FVPAYAFSNV 92 (329)
T ss_dssp HHHCSEEEEEEEE-------CHHHHHHHHHSCTTCCEEEEEEE-EECCEEESSSSSGGGCCEEECTT---EECTTTTEEE
T ss_pred hCceeEEEEeccc-------cHHHHHHHHHhhccCeEEecCcc-eeEEecCcccccccccccccccc---ccCHHHhccc
Confidence 4567777776641 1222223333 889999999999 77732211123333566666655 443 45666
Q ss_pred -------cccCcEEEccCccchhhchhh-hhcccCCceEecCCCcCcccCCcc-CcCCCCcceeCc
Q 003899 164 -------LYNLNTILLEDCYQLKKLCND-MGNLKKLRHLKSSNVDSLEEMPKG-FGKLTCLLTLGT 220 (788)
Q Consensus 164 -------L~~L~~L~L~~~~~l~~lp~~-i~~L~~L~~L~l~~~~~l~~~p~~-i~~l~~L~~L~~ 220 (788)
+++|+.|+|.+ .+..++.. |..+++|+.+++.+|. +..++.. |....++..+..
T Consensus 93 ~~~~~~g~~~L~~l~L~~--~i~~I~~~aF~~~~~L~~l~l~~n~-i~~i~~~aF~~~~~l~~l~~ 155 (329)
T 3sb4_A 93 VNGVTKGKQTLEKVILSE--KIKNIEDAAFKGCDNLKICQIRKKT-APNLLPEALADSVTAIFIPL 155 (329)
T ss_dssp ETTEEEECTTCCC-CBCT--TCCEECTTTTTTCTTCCEEEBCCSS-CCEECTTSSCTTTCEEEECT
T ss_pred ccccccccCCCcEEECCc--cccchhHHHhhcCcccceEEcCCCC-ccccchhhhcCCCceEEecC
Confidence 89999999987 56677665 8889999999998887 6666655 666666665543
No 136
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.04 E-value=3.2e-12 Score=121.64 Aligned_cols=127 Identities=18% Similarity=0.216 Sum_probs=105.9
Q ss_pred cccCCCceeEEEeccCCccccchhhhhHHHHhCCCCCeeEEEccCCcCcccccccccCCCCCceeeccCCcccccchhhh
Q 003899 83 SVCDVEHLRTFLPVNLSNYRINYLAWSVLQMLMNLPRLRVFSLHGYSNIIELPNEIENLKHLRFLNLSRTSIQILPESIN 162 (788)
Q Consensus 83 ~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~ 162 (788)
.+..+++|+.|.+.++. + ..+| .+..+++|++|++++| .+..+|..+..+++|++|++++|.++.+| .+.
T Consensus 43 ~~~~l~~L~~L~ls~n~------l-~~l~-~~~~l~~L~~L~l~~n-~l~~l~~~~~~~~~L~~L~L~~N~l~~l~-~~~ 112 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNN------I-EKIS-SLSGMENLRILSLGRN-LIKKIENLDAVADTLEELWISYNQIASLS-GIE 112 (198)
T ss_dssp HHHHTTTCSEEECSEEE------E-SCCC-CHHHHTTCCEEEEEEE-EECSCSSHHHHHHHCSEEEEEEEECCCHH-HHH
T ss_pred HHhcCCCCCEEECCCCC------C-cccc-ccccCCCCCEEECCCC-CcccccchhhcCCcCCEEECcCCcCCcCC-ccc
Confidence 56788999999987753 2 2244 6778999999999999 89999988888999999999999999988 699
Q ss_pred ccccCcEEEccCccchhhchh--hhhcccCCceEecCCCcCcccCCcc----------CcCCCCcceeCc
Q 003899 163 SLYNLNTILLEDCYQLKKLCN--DMGNLKKLRHLKSSNVDSLEEMPKG----------FGKLTCLLTLGT 220 (788)
Q Consensus 163 ~L~~L~~L~L~~~~~l~~lp~--~i~~L~~L~~L~l~~~~~l~~~p~~----------i~~l~~L~~L~~ 220 (788)
.+++|++|++++| .+..+|. .+..+++|++|++++|......|.. +..+++|++|+.
T Consensus 113 ~l~~L~~L~l~~N-~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld~ 181 (198)
T 1ds9_A 113 KLVNLRVLYMSNN-KITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLDG 181 (198)
T ss_dssp HHHHSSEEEESEE-ECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEECC
T ss_pred cCCCCCEEECCCC-cCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEECC
Confidence 9999999999999 7877765 6899999999999999833333332 778888888874
No 137
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.03 E-value=4.7e-10 Score=116.12 Aligned_cols=125 Identities=12% Similarity=0.115 Sum_probs=73.8
Q ss_pred cEEeeecCcccccCCCC-CCCCccEEEEeccCCc--ccccCC-CCCccEEEeccCCcceecC-CcCCCCccEEecccccc
Q 003899 411 RKLSLFNCHKLQGKLPK-RLLLLETLVIKSCQQL--LVTIQC-LPALSELQIDGCERVVFSS-PIDLSSLKSVHLAYVAN 485 (788)
Q Consensus 411 ~~L~l~~c~~l~~~lp~-~l~~L~~L~l~~c~~l--~~~~~~-~~~L~~L~l~~~~~~~~~~-~~~~~~L~~L~l~~~~~ 485 (788)
++..+..-..+.+.++. .++++++|.+.+.-.. ...+.. +++|+.|++++|....... ...++.+..+....+
T Consensus 5 ~~~~~~~~g~l~~~l~~~~~~~l~~L~l~g~i~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~-- 82 (329)
T 3sb4_A 5 KTYYVSKPGTLISMMTEEEANSITHLTLTGKLNAEDFRHLRDEFPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMAN-- 82 (329)
T ss_dssp EEEEESSTTCGGGGSCHHHHHHCSEEEEEEEECHHHHHHHHHSCTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTT--
T ss_pred eeEecCCCCcHHhhccchhhCceeEEEEeccccHHHHHHHHHhhccCeEEecCcceeEEecCcccccccccccccccc--
Confidence 34444433234444552 5677999999874211 112223 7889999999998542111 112333333333332
Q ss_pred ceeeccccccC--------CCCccEEEEecCcccchhhhcccccccCCCCCCeEEcccCCCccccccC
Q 003899 486 EVVLAGLFEQG--------LPKLENLVIVEVREQAYLWQSETRLLQDIRSLNRLHISRCPRLLSLVTD 545 (788)
Q Consensus 486 ~~~~~~~~~~~--------l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~ 545 (788)
.++...|.+ +++|+++++.+ ....+. ..+|.++++|+++++.++. +..++..
T Consensus 83 --~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~----~~aF~~~~~L~~l~l~~n~-i~~i~~~ 142 (329)
T 3sb4_A 83 --FVPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIE----DAAFKGCDNLKICQIRKKT-APNLLPE 142 (329)
T ss_dssp --EECTTTTEEEETTEEEECTTCCC-CBCT-TCCEEC----TTTTTTCTTCCEEEBCCSS-CCEECTT
T ss_pred --ccCHHHhcccccccccccCCCcEEECCc-cccchh----HHHhhcCcccceEEcCCCC-ccccchh
Confidence 566666777 88999999988 444443 6778889999999998743 4455443
No 138
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.00 E-value=4e-10 Score=104.22 Aligned_cols=92 Identities=23% Similarity=0.318 Sum_probs=80.5
Q ss_pred CCeeEEEccCCcCcccc-cccccCCCCCceeeccCCcccccchh-hhccccCcEEEccCccchhhchhh-hhcccCCceE
Q 003899 118 PRLRVFSLHGYSNIIEL-PNEIENLKHLRFLNLSRTSIQILPES-INSLYNLNTILLEDCYQLKKLCND-MGNLKKLRHL 194 (788)
Q Consensus 118 ~~Lr~L~L~~~~~l~~l-p~~~~~l~~L~~L~L~~~~i~~lp~~-i~~L~~L~~L~L~~~~~l~~lp~~-i~~L~~L~~L 194 (788)
++|++|+|++| .+..+ |..|.++++|++|+|++|+|+.+|.. +..+++|++|+|++| .+..+|.. +..+++|++|
T Consensus 33 ~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L 110 (174)
T 2r9u_A 33 TDKQRLWLNNN-QITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN-HLKSIPRGAFDNLKSLTHI 110 (174)
T ss_dssp TTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCSEE
T ss_pred CCCcEEEeCCC-CccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC-ccceeCHHHhccccCCCEE
Confidence 78999999999 88888 47789999999999999999999765 589999999999999 88888886 8999999999
Q ss_pred ecCCCcCcccCCccCcCC
Q 003899 195 KSSNVDSLEEMPKGFGKL 212 (788)
Q Consensus 195 ~l~~~~~l~~~p~~i~~l 212 (788)
++++|. +...+..+..+
T Consensus 111 ~L~~N~-~~c~~~~~~~l 127 (174)
T 2r9u_A 111 YLYNNP-WDCECRDIMYL 127 (174)
T ss_dssp ECCSSC-BCTTBGGGHHH
T ss_pred EeCCCC-cccccccHHHH
Confidence 999998 66666554443
No 139
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.98 E-value=5.1e-10 Score=104.19 Aligned_cols=105 Identities=23% Similarity=0.298 Sum_probs=90.2
Q ss_pred CCceeEEEeccCCccccchhhhhHHH-HhCCCCCeeEEEccCCcCccccc-ccccCCCCCceeeccCCcccccch-hhhc
Q 003899 87 VEHLRTFLPVNLSNYRINYLAWSVLQ-MLMNLPRLRVFSLHGYSNIIELP-NEIENLKHLRFLNLSRTSIQILPE-SINS 163 (788)
Q Consensus 87 ~~~Lr~L~~~~~~~~~~~~~~~~~~~-~~~~l~~Lr~L~L~~~~~l~~lp-~~~~~l~~L~~L~L~~~~i~~lp~-~i~~ 163 (788)
.++++.|.+.++. + ..++. .|..+++|++|++++| .+..+| ..|..+.+|++|++++|.++.+|. .+..
T Consensus 27 ~~~l~~L~l~~n~------l-~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~ 98 (177)
T 2o6r_A 27 PSSATRLELESNK------L-QSLPHGVFDKLTQLTKLSLSQN-QIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDK 98 (177)
T ss_dssp CTTCSEEECCSSC------C-CCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred CCCCcEEEeCCCc------c-cEeCHHHhcCcccccEEECCCC-cceEeChhHccCCCccCEEECCCCCccccCHHHhhC
Confidence 4688999888764 2 23444 6899999999999999 899987 457999999999999999999875 4689
Q ss_pred cccCcEEEccCccchhhchhh-hhcccCCceEecCCCc
Q 003899 164 LYNLNTILLEDCYQLKKLCND-MGNLKKLRHLKSSNVD 200 (788)
Q Consensus 164 L~~L~~L~L~~~~~l~~lp~~-i~~L~~L~~L~l~~~~ 200 (788)
+++|++|++++| .+..+|.. +..+++|++|++++|.
T Consensus 99 l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 135 (177)
T 2o6r_A 99 LTQLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNP 135 (177)
T ss_dssp CTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred CcccCEEECcCC-cceEeCHHHhcCCcccCEEEecCCC
Confidence 999999999999 78888877 5889999999999998
No 140
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.92 E-value=1.4e-07 Score=99.61 Aligned_cols=245 Identities=11% Similarity=0.154 Sum_probs=140.8
Q ss_pred CccEEeccccccceeeccccccCCCCccEEEEecCcccchhhhcccccccCCCCCCeEEcccCCCccccccCccccccCC
Q 003899 474 SLKSVHLAYVANEVVLAGLFEQGLPKLENLVIVEVREQAYLWQSETRLLQDIRSLNRLHISRCPRLLSLVTDEEHDQQQP 553 (788)
Q Consensus 474 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~ 553 (788)
+|+.+.+..+ ++.++...|.. .+|+.+.+.+ ...... ..+|.++++|+.+++.++ .+..++.. +|.
T Consensus 136 ~L~~i~l~~~--i~~I~~~aF~~-~~L~~i~lp~-~l~~I~----~~aF~~c~~L~~l~l~~n-~l~~I~~~-----aF~ 201 (401)
T 4fdw_A 136 QIAKVVLNEG--LKSIGDMAFFN-STVQEIVFPS-TLEQLK----EDIFYYCYNLKKADLSKT-KITKLPAS-----TFV 201 (401)
T ss_dssp CCSEEECCTT--CCEECTTTTTT-CCCCEEECCT-TCCEEC----SSTTTTCTTCCEEECTTS-CCSEECTT-----TTT
T ss_pred CccEEEeCCC--ccEECHHhcCC-CCceEEEeCC-CccEeh----HHHhhCcccCCeeecCCC-cceEechh-----hEe
Confidence 5666666542 55566555555 3577776664 222222 456667777777777652 34444433 222
Q ss_pred CCcccccceEE-EEEecCccCccccc-ccccCCCCcceEEEecCCCCcccCCCCCCCCcccEEEecccccccccccccCc
Q 003899 554 ESPYRLRFLEL-KIFIYDLENLQSLP-AGLHNLRHLQKIWISKCPNLESFPEEGLPSAKLTELMIWRCENLKALPNSMSS 631 (788)
Q Consensus 554 ~~~~~l~~L~L-~L~l~~~~~l~~l~-~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~ 631 (788)
. .+ | .+.+. ..++.++ ..|.++++|+.+++.+ .++.++...+.-.+|+.+.+
T Consensus 202 ~--~~-----L~~l~lp--~~l~~I~~~aF~~~~~L~~l~l~~--~l~~I~~~aF~~~~L~~i~l--------------- 255 (401)
T 4fdw_A 202 Y--AG-----IEEVLLP--VTLKEIGSQAFLKTSQLKTIEIPE--NVSTIGQEAFRESGITTVKL--------------- 255 (401)
T ss_dssp T--CC-----CSEEECC--TTCCEECTTTTTTCTTCCCEECCT--TCCEECTTTTTTCCCSEEEE---------------
T ss_pred e--cc-----cCEEEeC--CchheehhhHhhCCCCCCEEecCC--CccCccccccccCCccEEEe---------------
Confidence 1 11 2 33332 1233332 2345566666666664 34555554444344444444
Q ss_pred cceEeccCCCCCCCCCCCCC--CCCccEEEEeccCCC----CcccccccCCCCCccEEEEcCCCCCcccCCC----CCCC
Q 003899 632 LLRLGIIGCPSLESFPEDGF--PTNLQSLEVRDLKIT----KPLLEWGLNRFTSLRNLSIGGGYPDLLSSPP----FPAS 701 (788)
Q Consensus 632 L~~L~l~~c~~l~~~~~~~~--~~~L~~L~l~~~~~~----~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~----~~~~ 701 (788)
. +.++.++...+ +++|+.+++.++... ..+....|.++++|+.+.+.. .+..++. .+++
T Consensus 256 ------p--~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~---~i~~I~~~aF~~c~~ 324 (401)
T 4fdw_A 256 ------P--NGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE---SIRILGQGLLGGNRK 324 (401)
T ss_dssp ------E--TTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT---TCCEECTTTTTTCCS
T ss_pred ------C--CCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC---ceEEEhhhhhcCCCC
Confidence 2 23444444433 356777777654332 346666788888888888875 2555655 5678
Q ss_pred CCeEecCCCCCcccchhh-cCCCCCCCceecccCCCCcccCCC---CCcCCcceEeecCChhHHHhhcCCCCcccCcccc
Q 003899 702 LTELWISDMPDLECLSSI-SENLTSLEFLYLIDCPKLKYFPEQ---GLPKSLSRLSIHNCPLIEKRCRKDEGKYWPMISH 777 (788)
Q Consensus 702 L~~L~l~~~~~l~~l~~~-~~~l~~L~~L~l~~c~~l~~l~~~---~~~~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~ 777 (788)
|+.++|.. +++.|... |.++ +|+.+++.++ .+..++.. +.+.+++.+++..-. .+..+.+ ..|...+.
T Consensus 325 L~~l~lp~--~l~~I~~~aF~~~-~L~~l~l~~n-~~~~l~~~~F~~~~~~l~~l~vp~~~--~~~y~~a--~~W~~f~~ 396 (401)
T 4fdw_A 325 VTQLTIPA--NVTQINFSAFNNT-GIKEVKVEGT-TPPQVFEKVWYGFPDDITVIRVPAES--VEKYKNA--NGWRDFTN 396 (401)
T ss_dssp CCEEEECT--TCCEECTTSSSSS-CCCEEEECCS-SCCBCCCSSCCCSCTTCCEEEECGGG--HHHHHHS--TTGGGGGG
T ss_pred ccEEEECc--cccEEcHHhCCCC-CCCEEEEcCC-CCcccccccccCCCCCccEEEeCHHH--HHHhhhc--cchhhhhh
Confidence 88888855 57888755 8888 9999999998 56666664 455688999998743 2233332 34766643
No 141
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.91 E-value=1.5e-09 Score=99.96 Aligned_cols=87 Identities=28% Similarity=0.392 Sum_probs=76.1
Q ss_pred CCeeEEEccCCcCcccc-cccccCCCCCceeeccCCcccccchh-hhccccCcEEEccCccchhhchhh-hhcccCCceE
Q 003899 118 PRLRVFSLHGYSNIIEL-PNEIENLKHLRFLNLSRTSIQILPES-INSLYNLNTILLEDCYQLKKLCND-MGNLKKLRHL 194 (788)
Q Consensus 118 ~~Lr~L~L~~~~~l~~l-p~~~~~l~~L~~L~L~~~~i~~lp~~-i~~L~~L~~L~L~~~~~l~~lp~~-i~~L~~L~~L 194 (788)
+.|++|+|++| .+..+ |..|.++.+|++|+|++|.|+.+|.. +..+++|++|+|++| .+..+|.. +..+++|++|
T Consensus 30 ~~l~~L~L~~N-~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L 107 (170)
T 3g39_A 30 TTTQVLYLYDN-QITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN-QLKSIPRGAFDNLKSLTHI 107 (170)
T ss_dssp TTCSEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEE
T ss_pred CCCcEEEcCCC-cCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC-ccCEeCHHHhcCCCCCCEE
Confidence 78999999999 89888 47789999999999999999999754 689999999999999 78888875 8999999999
Q ss_pred ecCCCcCcccCCc
Q 003899 195 KSSNVDSLEEMPK 207 (788)
Q Consensus 195 ~l~~~~~l~~~p~ 207 (788)
++++|. +...+.
T Consensus 108 ~L~~N~-~~c~c~ 119 (170)
T 3g39_A 108 WLLNNP-WDCACS 119 (170)
T ss_dssp ECCSSC-BCTTBG
T ss_pred EeCCCC-CCCCch
Confidence 999998 544443
No 142
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.83 E-value=1.9e-07 Score=98.59 Aligned_cols=166 Identities=12% Similarity=0.141 Sum_probs=127.5
Q ss_pred cccCCCCcceEEEecCCCCcccCCCCCCCCcccEEEeccccccccccc----ccCccceEeccCCCCCCCCCCCCCC-CC
Q 003899 580 GLHNLRHLQKIWISKCPNLESFPEEGLPSAKLTELMIWRCENLKALPN----SMSSLLRLGIIGCPSLESFPEDGFP-TN 654 (788)
Q Consensus 580 ~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~c~~l~~l~~----~~~~L~~L~l~~c~~l~~~~~~~~~-~~ 654 (788)
.|.++++|+.+++.+ +.++.++...+.+.+|+++.+.. .++.++. .+.+|+.+.+.+ +++.++...+. .+
T Consensus 175 aF~~c~~L~~l~l~~-n~l~~I~~~aF~~~~L~~l~lp~--~l~~I~~~aF~~~~~L~~l~l~~--~l~~I~~~aF~~~~ 249 (401)
T 4fdw_A 175 IFYYCYNLKKADLSK-TKITKLPASTFVYAGIEEVLLPV--TLKEIGSQAFLKTSQLKTIEIPE--NVSTIGQEAFRESG 249 (401)
T ss_dssp TTTTCTTCCEEECTT-SCCSEECTTTTTTCCCSEEECCT--TCCEECTTTTTTCTTCCCEECCT--TCCEECTTTTTTCC
T ss_pred HhhCcccCCeeecCC-CcceEechhhEeecccCEEEeCC--chheehhhHhhCCCCCCEEecCC--CccCccccccccCC
Confidence 466788899999987 57888888888888999998874 3666653 233788888875 57777766554 58
Q ss_pred ccEEEEeccCCCCcccccccCCCCCccEEEEcCCCCC---cccCCC----CCCCCCeEecCCCCCcccchhh-cCCCCCC
Q 003899 655 LQSLEVRDLKITKPLLEWGLNRFTSLRNLSIGGGYPD---LLSSPP----FPASLTELWISDMPDLECLSSI-SENLTSL 726 (788)
Q Consensus 655 L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~---~~~~~~----~~~~L~~L~l~~~~~l~~l~~~-~~~l~~L 726 (788)
|+.+.+. +.+..+....|.++++|+.+.+.++... ...++. .+++|+.+++.+ .++.|+.. |.++++|
T Consensus 250 L~~i~lp--~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~--~i~~I~~~aF~~c~~L 325 (401)
T 4fdw_A 250 ITTVKLP--NGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE--SIRILGQGLLGGNRKV 325 (401)
T ss_dssp CSEEEEE--TTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT--TCCEECTTTTTTCCSC
T ss_pred ccEEEeC--CCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC--ceEEEhhhhhcCCCCc
Confidence 9999994 4467777889999999999999883221 224554 788999999985 68888866 8899999
Q ss_pred CceecccCCCCcccCCCCC--cCCcceEeecCC
Q 003899 727 EFLYLIDCPKLKYFPEQGL--PKSLSRLSIHNC 757 (788)
Q Consensus 727 ~~L~l~~c~~l~~l~~~~~--~~~L~~L~i~~c 757 (788)
+.+.+.+. ++.+....+ + +|+.+++.++
T Consensus 326 ~~l~lp~~--l~~I~~~aF~~~-~L~~l~l~~n 355 (401)
T 4fdw_A 326 TQLTIPAN--VTQINFSAFNNT-GIKEVKVEGT 355 (401)
T ss_dssp CEEEECTT--CCEECTTSSSSS-CCCEEEECCS
T ss_pred cEEEECcc--ccEEcHHhCCCC-CCCEEEEcCC
Confidence 99999654 888877532 4 8999999987
No 143
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.78 E-value=5.4e-07 Score=95.59 Aligned_cols=62 Identities=16% Similarity=0.007 Sum_probs=32.7
Q ss_pred CcccccccCCCCCccEEEEcCCCCCcccCCC----CCCCCCeEecCCCCCcccchhh-cCCCCCCCceeccc
Q 003899 667 KPLLEWGLNRFTSLRNLSIGGGYPDLLSSPP----FPASLTELWISDMPDLECLSSI-SENLTSLEFLYLID 733 (788)
Q Consensus 667 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~----~~~~L~~L~l~~~~~l~~l~~~-~~~l~~L~~L~l~~ 733 (788)
+.+...+|.++++|+.+++.. .++.|+. .+.+|+.+++.. .++.|... |.++++|+.+++..
T Consensus 309 ~~I~~~aF~~c~~L~~i~lp~---~v~~I~~~aF~~c~~L~~i~lp~--~l~~I~~~aF~~C~~L~~i~lp~ 375 (394)
T 4fs7_A 309 KFIGEEAFESCTSLVSIDLPY---LVEEIGKRSFRGCTSLSNINFPL--SLRKIGANAFQGCINLKKVELPK 375 (394)
T ss_dssp CEECTTTTTTCTTCCEECCCT---TCCEECTTTTTTCTTCCEECCCT--TCCEECTTTBTTCTTCCEEEEEG
T ss_pred ceechhhhcCCCCCCEEEeCC---cccEEhHHhccCCCCCCEEEECc--cccEehHHHhhCCCCCCEEEECC
Confidence 334444455555555555543 1333333 345555555543 35666544 66777777776653
No 144
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.72 E-value=1.3e-08 Score=106.20 Aligned_cols=88 Identities=16% Similarity=0.188 Sum_probs=44.3
Q ss_pred HHHHhCCCCCeeEEEccC-CcCccccc-ccccCCCCCceeeccCCcccccc-hhhhccccCcEEEccCccchhhchhhhh
Q 003899 110 VLQMLMNLPRLRVFSLHG-YSNIIELP-NEIENLKHLRFLNLSRTSIQILP-ESINSLYNLNTILLEDCYQLKKLCNDMG 186 (788)
Q Consensus 110 ~~~~~~~l~~Lr~L~L~~-~~~l~~lp-~~~~~l~~L~~L~L~~~~i~~lp-~~i~~L~~L~~L~L~~~~~l~~lp~~i~ 186 (788)
+|. +..+++|++|+|++ | .+..+| ..|++|.+|++|+|++|.|+.+| ..|..|++|++|+|++| .+..+|..+.
T Consensus 24 ip~-l~~~~~L~~L~l~~~n-~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~ 100 (347)
T 2ifg_A 24 LHH-LPGAENLTELYIENQQ-HLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN-ALESLSWKTV 100 (347)
T ss_dssp TTT-SCSCSCCSEEECCSCS-SCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS-CCSCCCSTTT
T ss_pred cCC-CCCCCCeeEEEccCCC-CCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC-ccceeCHHHc
Confidence 444 55555555555553 4 555554 34555555555555555555442 34455555555555555 4445544432
Q ss_pred cccCCceEecCCCc
Q 003899 187 NLKKLRHLKSSNVD 200 (788)
Q Consensus 187 ~L~~L~~L~l~~~~ 200 (788)
....|++|++.+|.
T Consensus 101 ~~~~L~~l~l~~N~ 114 (347)
T 2ifg_A 101 QGLSLQELVLSGNP 114 (347)
T ss_dssp CSCCCCEEECCSSC
T ss_pred ccCCceEEEeeCCC
Confidence 22225555555554
No 145
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.67 E-value=1.1e-06 Score=93.25 Aligned_cols=77 Identities=10% Similarity=0.046 Sum_probs=40.0
Q ss_pred ccCCCCCccEEEeccCC-cceecCCcCCCCccEEeccccccceeeccccccCCCCccEEEEecCcccchhhhcccccccC
Q 003899 446 TIQCLPALSELQIDGCE-RVVFSSPIDLSSLKSVHLAYVANEVVLAGLFEQGLPKLENLVIVEVREQAYLWQSETRLLQD 524 (788)
Q Consensus 446 ~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~ 524 (788)
.|..+.+|+.+++..+- ......+.++.+|+.+.+..+ ++.+....|.++++|+.+++..+ +..+ ...+.+
T Consensus 315 aF~~c~~L~~i~lp~~v~~I~~~aF~~c~~L~~i~lp~~--l~~I~~~aF~~C~~L~~i~lp~~--~~~~----~~~F~~ 386 (394)
T 4fs7_A 315 AFESCTSLVSIDLPYLVEEIGKRSFRGCTSLSNINFPLS--LRKIGANAFQGCINLKKVELPKR--LEQY----RYDFED 386 (394)
T ss_dssp TTTTCTTCCEECCCTTCCEECTTTTTTCTTCCEECCCTT--CCEECTTTBTTCTTCCEEEEEGG--GGGG----GGGBCT
T ss_pred hhcCCCCCCEEEeCCcccEEhHHhccCCCCCCEEEECcc--ccEehHHHhhCCCCCCEEEECCC--CEEh----hheecC
Confidence 34455556665554332 111233445666666666542 55666666666677777766543 2222 334555
Q ss_pred CCCCCe
Q 003899 525 IRSLNR 530 (788)
Q Consensus 525 l~~L~~ 530 (788)
+++|+.
T Consensus 387 c~~L~~ 392 (394)
T 4fs7_A 387 TTKFKW 392 (394)
T ss_dssp TCEEEE
T ss_pred CCCCcE
Confidence 555544
No 146
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.64 E-value=2.5e-08 Score=104.07 Aligned_cols=103 Identities=15% Similarity=0.053 Sum_probs=85.3
Q ss_pred EEEccCCcCcccccccccCCCCCceeeccC-Ccccccc-hhhhccccCcEEEccCccchhhchh-hhhcccCCceEecCC
Q 003899 122 VFSLHGYSNIIELPNEIENLKHLRFLNLSR-TSIQILP-ESINSLYNLNTILLEDCYQLKKLCN-DMGNLKKLRHLKSSN 198 (788)
Q Consensus 122 ~L~L~~~~~l~~lp~~~~~l~~L~~L~L~~-~~i~~lp-~~i~~L~~L~~L~L~~~~~l~~lp~-~i~~L~~L~~L~l~~ 198 (788)
.+++++++.+..+|. |..+.+|++|+|++ |.|..+| ..|+.|++|++|+|++| .+..+|. .|+.|++|++|+|++
T Consensus 12 ~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 12 GLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKS-GLRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp CEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSS-CCCEECTTGGGSCSCCCEEECCS
T ss_pred EEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCC-ccceeCHHHhcCCcCCCEEeCCC
Confidence 457777547889999 99999999999996 9999886 67999999999999999 6777765 579999999999999
Q ss_pred CcCcccCCccCcCCCCcceeCceEeCCCC
Q 003899 199 VDSLEEMPKGFGKLTCLLTLGTFVVGKDG 227 (788)
Q Consensus 199 ~~~l~~~p~~i~~l~~L~~L~~~~~~~~~ 227 (788)
|. +..+|..+.....|++|++.++....
T Consensus 90 N~-l~~~~~~~~~~~~L~~l~l~~N~~~c 117 (347)
T 2ifg_A 90 NA-LESLSWKTVQGLSLQELVLSGNPLHC 117 (347)
T ss_dssp SC-CSCCCSTTTCSCCCCEEECCSSCCCC
T ss_pred Cc-cceeCHHHcccCCceEEEeeCCCccC
Confidence 99 88888774443349999987765543
No 147
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.36 E-value=8.4e-08 Score=100.23 Aligned_cols=155 Identities=15% Similarity=0.132 Sum_probs=82.7
Q ss_pred CCceeEEEEEccCCcccc--cccc-cc-CCCceeEEEeccCCccccchhhhhHHH-HhCCCCCeeEEEccCCcCccccc-
Q 003899 62 CQSLRHFSYICGESDGEK--RLQS-VC-DVEHLRTFLPVNLSNYRINYLAWSVLQ-MLMNLPRLRVFSLHGYSNIIELP- 135 (788)
Q Consensus 62 ~~~~r~lsl~~~~~~~~~--~~~~-~~-~~~~Lr~L~~~~~~~~~~~~~~~~~~~-~~~~l~~Lr~L~L~~~~~l~~lp- 135 (788)
...++.+.+..+.+.... .+.. +. ..++|+.|.+.++. +...... ....+++|+.|+|++| .++...
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~------l~~~~~~~l~~~L~~L~~L~Ls~n-~l~~~~~ 143 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQ------LDPAGLRTLLPVFLRARKLGLQLN-SLGPEAC 143 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCC------CCHHHHHHTHHHHHTEEEEECCSS-CCCHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCC------CCHHHHHHHHHHHHhccHhhcCCC-CCCHHHH
Confidence 345666666665543211 0111 11 22567777666643 2222222 3334456777777777 554432
Q ss_pred ccc-----cCCCCCceeeccCCcccc-----cchhhhccccCcEEEccCccchh-----hchhhhhcccCCceEecCCCc
Q 003899 136 NEI-----ENLKHLRFLNLSRTSIQI-----LPESINSLYNLNTILLEDCYQLK-----KLCNDMGNLKKLRHLKSSNVD 200 (788)
Q Consensus 136 ~~~-----~~l~~L~~L~L~~~~i~~-----lp~~i~~L~~L~~L~L~~~~~l~-----~lp~~i~~L~~L~~L~l~~~~ 200 (788)
..+ ....+|++|+|++|.|+. ++..+..+++|++|+|++| .+. .++..+...++|++|++++|.
T Consensus 144 ~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N-~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~ 222 (372)
T 3un9_A 144 KDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHT-GLGDEGLELLAAQLDRNRQLQELNVAYNG 222 (372)
T ss_dssp HHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTS-SCHHHHHHHHHHHGGGCSCCCEEECCSSC
T ss_pred HHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCC-CCCcHHHHHHHHHHhcCCCcCeEECCCCC
Confidence 222 235667777777777653 3445566677777777777 343 234445666677777777776
Q ss_pred Cccc-----CCccCcCCCCcceeCceEeCC
Q 003899 201 SLEE-----MPKGFGKLTCLLTLGTFVVGK 225 (788)
Q Consensus 201 ~l~~-----~p~~i~~l~~L~~L~~~~~~~ 225 (788)
+.. ++..+...++|++|++.++..
T Consensus 223 -i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i 251 (372)
T 3un9_A 223 -AGDTAALALARAAREHPSLELLHLYFNEL 251 (372)
T ss_dssp -CCHHHHHHHHHHHHHCSSCCEEECTTSSC
T ss_pred -CCHHHHHHHHHHHHhCCCCCEEeccCCCC
Confidence 432 222344556677776655443
No 148
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.26 E-value=6.7e-07 Score=93.41 Aligned_cols=133 Identities=13% Similarity=0.051 Sum_probs=97.1
Q ss_pred CceeEEEEEccCCccccccccccCCCceeEEEeccCCccccchhhhhH----HHHh-CCCCCeeEEEccCCcCccc----
Q 003899 63 QSLRHFSYICGESDGEKRLQSVCDVEHLRTFLPVNLSNYRINYLAWSV----LQML-MNLPRLRVFSLHGYSNIIE---- 133 (788)
Q Consensus 63 ~~~r~lsl~~~~~~~~~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~----~~~~-~~l~~Lr~L~L~~~~~l~~---- 133 (788)
..++.+.+..+.+.......-...+++|+.|.+.++. +.... ...+ ...+.|++|+|++| .++.
T Consensus 101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~------l~~~~~~~L~~~L~~~~~~L~~L~Ls~n-~l~~~~~~ 173 (372)
T 3un9_A 101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNS------LGPEACKDLRDLLLHDQCQITTLRLSNN-PLTAAGVA 173 (372)
T ss_dssp SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSC------CCHHHHHHHHHHHHSTTCCCCEEECCSS-CCHHHHHH
T ss_pred CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCC------CCHHHHHHHHHHHHhcCCccceeeCCCC-CCChHHHH
Confidence 5789999988865432211112245689999888764 22222 2233 46789999999999 7754
Q ss_pred -ccccccCCCCCceeeccCCcccc-----cchhhhccccCcEEEccCccchh-----hchhhhhcccCCceEecCCCcCc
Q 003899 134 -LPNEIENLKHLRFLNLSRTSIQI-----LPESINSLYNLNTILLEDCYQLK-----KLCNDMGNLKKLRHLKSSNVDSL 202 (788)
Q Consensus 134 -lp~~~~~l~~L~~L~L~~~~i~~-----lp~~i~~L~~L~~L~L~~~~~l~-----~lp~~i~~L~~L~~L~l~~~~~l 202 (788)
++..+...++|++|+|++|.|.. ++..+...++|++|+|++| .++ .++..+...++|++|++++|. +
T Consensus 174 ~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N-~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~-i 251 (372)
T 3un9_A 174 VLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYN-GAGDTAALALARAAREHPSLELLHLYFNE-L 251 (372)
T ss_dssp HHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSS-CCCHHHHHHHHHHHHHCSSCCEEECTTSS-C
T ss_pred HHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCC-CCCHHHHHHHHHHHHhCCCCCEEeccCCC-C
Confidence 45566789999999999999873 4667788899999999999 554 345556778999999999998 5
Q ss_pred cc
Q 003899 203 EE 204 (788)
Q Consensus 203 ~~ 204 (788)
..
T Consensus 252 ~~ 253 (372)
T 3un9_A 252 SS 253 (372)
T ss_dssp CH
T ss_pred CH
Confidence 43
No 149
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.09 E-value=0.00068 Score=71.52 Aligned_cols=71 Identities=14% Similarity=0.140 Sum_probs=32.1
Q ss_pred CccEEEEeccCCCCcccccccCCCCCccEEEEcCCCCCcccCCC----CCCCCCeEecCCCCCcccchhhcCCCCCCCce
Q 003899 654 NLQSLEVRDLKITKPLLEWGLNRFTSLRNLSIGGGYPDLLSSPP----FPASLTELWISDMPDLECLSSISENLTSLEFL 729 (788)
Q Consensus 654 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~----~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L 729 (788)
+|+.+.+.+ .++.+...+|.++++|+.+.+.. .+..|+. .+++|+.+++.+. .. . ...+..+.+|+.+
T Consensus 312 ~L~~i~lp~--~v~~I~~~aF~~C~~L~~i~ip~---sv~~I~~~aF~~C~~L~~i~~~~~-~~-~-~~~~~~~~~L~~i 383 (394)
T 4gt6_A 312 SLKSIDIPE--GITQILDDAFAGCEQLERIAIPS---SVTKIPESAFSNCTALNNIEYSGS-RS-Q-WNAISTDSGLQNL 383 (394)
T ss_dssp TCCEEECCT--TCCEECTTTTTTCTTCCEEEECT---TCCBCCGGGGTTCTTCCEEEESSC-HH-H-HHTCBCCCCC---
T ss_pred CcCEEEeCC--cccEehHhHhhCCCCCCEEEECc---ccCEEhHhHhhCCCCCCEEEECCc-ee-e-hhhhhccCCCCEE
Confidence 455555432 23444445566666666666643 2444443 4556666666552 11 1 1235555666666
Q ss_pred ecc
Q 003899 730 YLI 732 (788)
Q Consensus 730 ~l~ 732 (788)
.+.
T Consensus 384 ~i~ 386 (394)
T 4gt6_A 384 PVA 386 (394)
T ss_dssp ---
T ss_pred EeC
Confidence 554
No 150
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.06 E-value=2.3e-06 Score=77.13 Aligned_cols=84 Identities=14% Similarity=0.154 Sum_probs=47.4
Q ss_pred CccEEEEeccCCCCcccccccCCCCCccEEEEcCCCCCcccCCC----C----CCCCCeEecCCCCCcccchh-hcCCCC
Q 003899 654 NLQSLEVRDLKITKPLLEWGLNRFTSLRNLSIGGGYPDLLSSPP----F----PASLTELWISDMPDLECLSS-ISENLT 724 (788)
Q Consensus 654 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~----~----~~~L~~L~l~~~~~l~~l~~-~~~~l~ 724 (788)
.|+.|++++|.... ..-..+.++++|++|++++ |..+..-.- . +++|++|+|++|+.++.--- .+..++
T Consensus 62 ~L~~LDLs~~~Itd-~GL~~L~~~~~L~~L~L~~-C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~ 139 (176)
T 3e4g_A 62 KIQAIDATDSCIMS-IGFDHMEGLQYVEKIRLCK-CHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFR 139 (176)
T ss_dssp CEEEEEEESCCCCG-GGGGGGTTCSCCCEEEEES-CTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCT
T ss_pred eEeEEeCcCCCccH-HHHHHhcCCCCCCEEEeCC-CCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCC
Confidence 67777777777332 2112356677777777777 665444221 1 23566666666666654221 244566
Q ss_pred CCCceecccCCCCcc
Q 003899 725 SLEFLYLIDCPKLKY 739 (788)
Q Consensus 725 ~L~~L~l~~c~~l~~ 739 (788)
+|++|++++|+.++.
T Consensus 140 ~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 140 NLKYLFLSDLPGVKE 154 (176)
T ss_dssp TCCEEEEESCTTCCC
T ss_pred CCCEEECCCCCCCCc
Confidence 666666666665554
No 151
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.99 E-value=5.9e-06 Score=76.77 Aligned_cols=86 Identities=19% Similarity=0.182 Sum_probs=38.4
Q ss_pred HhCCCCCeeEEEccCCcCccc-----ccccccCCCCCceeeccCCcccc-----cchhhhccccCcEEEc--cCccchhh
Q 003899 113 MLMNLPRLRVFSLHGYSNIIE-----LPNEIENLKHLRFLNLSRTSIQI-----LPESINSLYNLNTILL--EDCYQLKK 180 (788)
Q Consensus 113 ~~~~l~~Lr~L~L~~~~~l~~-----lp~~~~~l~~L~~L~L~~~~i~~-----lp~~i~~L~~L~~L~L--~~~~~l~~ 180 (788)
.+...+.|++|+|++| .+.. +...+...+.|++|+|++|.|.. +...+...++|++|+| ++| .+..
T Consensus 60 ~L~~~~~L~~L~Ls~n-~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N-~i~~ 137 (185)
T 1io0_A 60 ALKTNTYVKKFSIVGT-RSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQ-PLGN 137 (185)
T ss_dssp HHTTCCSCCEEECTTS-CCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSS-CCCH
T ss_pred HHHhCCCcCEEECcCC-CCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCC-CCCH
Confidence 4444555555555555 3332 22233333455555555555542 2334444445555555 444 2211
Q ss_pred -----chhhhhcccCCceEecCCCc
Q 003899 181 -----LCNDMGNLKKLRHLKSSNVD 200 (788)
Q Consensus 181 -----lp~~i~~L~~L~~L~l~~~~ 200 (788)
+...+...++|++|++++|.
T Consensus 138 ~g~~~l~~~L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 138 NVEMEIANMLEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp HHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred HHHHHHHHHHHhCCCcCEEeccCCC
Confidence 22233344455555555544
No 152
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.94 E-value=1e-05 Score=78.94 Aligned_cols=59 Identities=27% Similarity=0.303 Sum_probs=27.2
Q ss_pred CCCCCceeeccCCccccc---chhhhccccCcEEEccCccchhhchhhhhccc--CCceEecCCCc
Q 003899 140 NLKHLRFLNLSRTSIQIL---PESINSLYNLNTILLEDCYQLKKLCNDMGNLK--KLRHLKSSNVD 200 (788)
Q Consensus 140 ~l~~L~~L~L~~~~i~~l---p~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~--~L~~L~l~~~~ 200 (788)
++++|++|+|++|.|..+ |..+..+++|++|+|++| .+..+. .+..+. +|++|++++|.
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N-~i~~~~-~l~~l~~l~L~~L~L~~Np 231 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGN-ELKSER-ELDKIKGLKLEELWLDGNS 231 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTS-CCCSGG-GGGGGTTSCCSEEECTTST
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCC-ccCCch-hhhhcccCCcceEEccCCc
Confidence 344555555555554433 233444555555555555 343331 233333 55555555555
No 153
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.91 E-value=0.0033 Score=65.78 Aligned_cols=69 Identities=9% Similarity=0.093 Sum_probs=36.4
Q ss_pred cccccccCCCCCccEEEEcCCCCCcccCCC----CCCCCCeEecCCCCCcccchhh-cCCCCCCCceecccCCCCcccCC
Q 003899 668 PLLEWGLNRFTSLRNLSIGGGYPDLLSSPP----FPASLTELWISDMPDLECLSSI-SENLTSLEFLYLIDCPKLKYFPE 742 (788)
Q Consensus 668 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~----~~~~L~~L~l~~~~~l~~l~~~-~~~l~~L~~L~l~~c~~l~~l~~ 742 (788)
.+....|.++++|+.+.+.+ ..++.|+. .+.+|+.++|.. .++.|... |.++++|+.+.+.. +++.+..
T Consensus 276 ~i~~~aF~~c~~L~~i~l~~--~~i~~I~~~aF~~c~~L~~i~lp~--~l~~I~~~aF~~C~~L~~i~ip~--~v~~I~~ 349 (379)
T 4h09_A 276 TVPYLLCSGCSNLTKVVMDN--SAIETLEPRVFMDCVKLSSVTLPT--ALKTIQVYAFKNCKALSTISYPK--SITLIES 349 (379)
T ss_dssp EECTTTTTTCTTCCEEEECC--TTCCEECTTTTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCCCCCCT--TCCEECT
T ss_pred eccccccccccccccccccc--cccceehhhhhcCCCCCCEEEcCc--cccEEHHHHhhCCCCCCEEEECC--ccCEEch
Confidence 33444455555555555544 33444443 445555555543 45666543 66677777766643 2555544
No 154
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.91 E-value=2e-05 Score=73.13 Aligned_cols=115 Identities=17% Similarity=0.188 Sum_probs=87.1
Q ss_pred hhHHHHhCCCCCeeEEEccCCcCcc-----cccccccCCCCCceeeccCCcccc-----cchhhhccccCcEEEccCccc
Q 003899 108 WSVLQMLMNLPRLRVFSLHGYSNII-----ELPNEIENLKHLRFLNLSRTSIQI-----LPESINSLYNLNTILLEDCYQ 177 (788)
Q Consensus 108 ~~~~~~~~~l~~Lr~L~L~~~~~l~-----~lp~~~~~l~~L~~L~L~~~~i~~-----lp~~i~~L~~L~~L~L~~~~~ 177 (788)
..+...+...+.|++|+|++|..+. .+...+...++|++|+|++|.|.. +...+...++|++|+|++| .
T Consensus 26 ~~l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N-~ 104 (185)
T 1io0_A 26 ETLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESN-F 104 (185)
T ss_dssp HHHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSS-C
T ss_pred HHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCC-c
Confidence 4445588999999999999983343 244667778999999999999873 4566777789999999999 5
Q ss_pred hhh-----chhhhhcccCCceEec--CCCcCccc-----CCccCcCCCCcceeCceEeC
Q 003899 178 LKK-----LCNDMGNLKKLRHLKS--SNVDSLEE-----MPKGFGKLTCLLTLGTFVVG 224 (788)
Q Consensus 178 l~~-----lp~~i~~L~~L~~L~l--~~~~~l~~-----~p~~i~~l~~L~~L~~~~~~ 224 (788)
+.. +...+...++|++|++ ++|. +.. +...+...++|++|++..+.
T Consensus 105 i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~-i~~~g~~~l~~~L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 105 ISGSGILALVEALQSNTSLIELRIDNQSQP-LGNNVEMEIANMLEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp CCHHHHHHHHHGGGGCSSCCEEECCCCSSC-CCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred CCHHHHHHHHHHHHhCCCceEEEecCCCCC-CCHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence 543 5666788889999999 7787 443 33345667899999986554
No 155
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.88 E-value=0.00029 Score=74.34 Aligned_cols=125 Identities=10% Similarity=0.136 Sum_probs=79.7
Q ss_pred ccccCCC-ceeEEEeccCCccccchhhhhHHH-HhCCCCCeeEEEccCC--cCccccc-ccccCCCCCceeeccCCcccc
Q 003899 82 QSVCDVE-HLRTFLPVNLSNYRINYLAWSVLQ-MLMNLPRLRVFSLHGY--SNIIELP-NEIENLKHLRFLNLSRTSIQI 156 (788)
Q Consensus 82 ~~~~~~~-~Lr~L~~~~~~~~~~~~~~~~~~~-~~~~l~~Lr~L~L~~~--~~l~~lp-~~~~~l~~L~~L~L~~~~i~~ 156 (788)
.+|.+++ .|+++.+-+.- ..+.+ +|.++.+|+.+.+..+ ..+..++ .+|.++..|+.+.+..+ ++.
T Consensus 57 ~aF~~~~~~L~sI~iP~sv--------t~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~ 127 (394)
T 4gt6_A 57 RVFCNYKYVLTSVQIPDTV--------TEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTE 127 (394)
T ss_dssp TTTTTCCSCCCEEEECTTC--------CEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSE
T ss_pred hhccCCCCcCEEEEECCCe--------eEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cce
Confidence 4566664 47777664421 23333 7888888888888765 1366665 66788888888777654 666
Q ss_pred cc-hhhhccccCcEEEccCccchhhchhh-hhcccCCceEecCCCcCcccCCccCcCCCCcceeC
Q 003899 157 LP-ESINSLYNLNTILLEDCYQLKKLCND-MGNLKKLRHLKSSNVDSLEEMPKGFGKLTCLLTLG 219 (788)
Q Consensus 157 lp-~~i~~L~~L~~L~L~~~~~l~~lp~~-i~~L~~L~~L~l~~~~~l~~~p~~i~~l~~L~~L~ 219 (788)
++ ..+..+.+|+.+.+..+ +..++.. +....+|+.+.+..+ +..+....-.-..|+.+.
T Consensus 128 I~~~aF~~c~~L~~i~lp~~--~~~I~~~~F~~c~~L~~i~~~~~--~~~I~~~aF~~~~l~~i~ 188 (394)
T 4gt6_A 128 IDSEAFHHCEELDTVTIPEG--VTSVADGMFSYCYSLHTVTLPDS--VTAIEERAFTGTALTQIH 188 (394)
T ss_dssp ECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCCCSEEE
T ss_pred ehhhhhhhhcccccccccce--eeeecccceecccccccccccce--eeEeccccccccceeEEE
Confidence 64 56778888888888653 4455443 677788888877654 455554422224455544
No 156
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.88 E-value=3.4e-06 Score=82.42 Aligned_cols=82 Identities=18% Similarity=0.283 Sum_probs=63.3
Q ss_pred HhCCCCCeeEEEccCCcCccccc---ccccCCCCCceeeccCCcccccchhhhccc--cCcEEEccCccchhhch-----
Q 003899 113 MLMNLPRLRVFSLHGYSNIIELP---NEIENLKHLRFLNLSRTSIQILPESINSLY--NLNTILLEDCYQLKKLC----- 182 (788)
Q Consensus 113 ~~~~l~~Lr~L~L~~~~~l~~lp---~~~~~l~~L~~L~L~~~~i~~lp~~i~~L~--~L~~L~L~~~~~l~~lp----- 182 (788)
...++++|++|+|++| .+..++ ..+..+++|++|+|++|.|..+ ..+..+. +|+.|+|++|..-..+|
T Consensus 165 ~~~~l~~L~~L~Ls~N-~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~-~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y 242 (267)
T 3rw6_A 165 IEENIPELLSLNLSNN-RLYRLDDMSSIVQKAPNLKILNLSGNELKSE-RELDKIKGLKLEELWLDGNSLCDTFRDQSTY 242 (267)
T ss_dssp HHHHCTTCCEEECTTS-CCCCCGGGTTHHHHSTTCCEEECTTSCCCSG-GGGGGGTTSCCSEEECTTSTTGGGCSSHHHH
T ss_pred HHhhCCCCCEEECCCC-CCCCCccchhHHhhCCCCCEEECCCCccCCc-hhhhhcccCCcceEEccCCcCccccCcchhH
Confidence 4567899999999999 777654 5567899999999999999987 3356666 99999999994333343
Q ss_pred --hhhhcccCCceEec
Q 003899 183 --NDMGNLKKLRHLKS 196 (788)
Q Consensus 183 --~~i~~L~~L~~L~l 196 (788)
..+..+++|+.||-
T Consensus 243 ~~~il~~~P~L~~LDg 258 (267)
T 3rw6_A 243 ISAIRERFPKLLRLDG 258 (267)
T ss_dssp HHHHHHHCTTCCEESS
T ss_pred HHHHHHHCcccCeECC
Confidence 23677888888864
No 157
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.84 E-value=9.8e-06 Score=73.06 Aligned_cols=70 Identities=13% Similarity=0.007 Sum_probs=43.8
Q ss_pred cCCCCccEEeccccccceeeccccccC----CCCccEEEEecCcccchhhhcccccccCCCCCCeEEcccCCCcccc
Q 003899 470 IDLSSLKSVHLAYVANEVVLAGLFEQG----LPKLENLVIVEVREQAYLWQSETRLLQDIRSLNRLHISRCPRLLSL 542 (788)
Q Consensus 470 ~~~~~L~~L~l~~~~~~~~~~~~~~~~----l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~ 542 (788)
..+++|++|++++|..++......... .++|++|++++|..++..+ -..+..+++|++|++++|+.+++.
T Consensus 82 ~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~G---l~~L~~~~~L~~L~L~~c~~Itd~ 155 (176)
T 3e4g_A 82 EGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKG---IIALHHFRNLKYLFLSDLPGVKEK 155 (176)
T ss_dssp TTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHH---HHHGGGCTTCCEEEEESCTTCCCH
T ss_pred cCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHH---HHHHhcCCCCCEEECCCCCCCCch
Confidence 345666666666666555433222222 2468888888887655432 344567888888888888877753
No 158
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.82 E-value=2.1e-05 Score=81.22 Aligned_cols=52 Identities=27% Similarity=0.253 Sum_probs=25.8
Q ss_pred cCCcccEEeeecCcccccCCC-CCCCCccEEEEeccCCcccc---c--CCCCCccEEEec
Q 003899 406 VFPKLRKLSLFNCHKLQGKLP-KRLLLLETLVIKSCQQLLVT---I--QCLPALSELQID 459 (788)
Q Consensus 406 ~~~~L~~L~l~~c~~l~~~lp-~~l~~L~~L~l~~c~~l~~~---~--~~~~~L~~L~l~ 459 (788)
.+|+|++|.+++|..+. ++ -..++|++|.+..|...... + ..+|+|++|+++
T Consensus 170 ~~P~L~~L~L~g~~~l~--l~~~~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~ 227 (362)
T 2ra8_A 170 AMPLLNNLKIKGTNNLS--IGKKPRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLY 227 (362)
T ss_dssp TCTTCCEEEEECCBTCB--CCSCBCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEE
T ss_pred cCCCCcEEEEeCCCCce--eccccCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEe
Confidence 45666666666552222 22 12456666666655422111 1 245666666664
No 159
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.69 E-value=0.00011 Score=75.82 Aligned_cols=151 Identities=13% Similarity=0.082 Sum_probs=87.7
Q ss_pred CceeEEEEEccCCcc--c-----ccc-ccccCCCceeEEEeccCCccccchhhhhHHHHhCCCCCeeEEEccCCcCcccc
Q 003899 63 QSLRHFSYICGESDG--E-----KRL-QSVCDVEHLRTFLPVNLSNYRINYLAWSVLQMLMNLPRLRVFSLHGYSNIIEL 134 (788)
Q Consensus 63 ~~~r~lsl~~~~~~~--~-----~~~-~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~l~~l 134 (788)
.+++.+.+....... . ..+ .-+..+++|+.|.+.++.. ..++. + .+++|+.|++..+ .+..-
T Consensus 139 ~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~-------l~l~~-~-~~~~L~~L~L~~~-~l~~~ 208 (362)
T 2ra8_A 139 AHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNN-------LSIGK-K-PRPNLKSLEIISG-GLPDS 208 (362)
T ss_dssp TTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBT-------CBCCS-C-BCTTCSEEEEECS-BCCHH
T ss_pred chhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCC-------ceecc-c-cCCCCcEEEEecC-CCChH
Confidence 478888775432110 0 011 1234567888888876521 11222 2 3778888888877 54321
Q ss_pred c-ccc--cCCCCCceeeccC--Cc------ccccchhh--hccccCcEEEccCccchhhchhhhh---cccCCceEecCC
Q 003899 135 P-NEI--ENLKHLRFLNLSR--TS------IQILPESI--NSLYNLNTILLEDCYQLKKLCNDMG---NLKKLRHLKSSN 198 (788)
Q Consensus 135 p-~~~--~~l~~L~~L~L~~--~~------i~~lp~~i--~~L~~L~~L~L~~~~~l~~lp~~i~---~L~~L~~L~l~~ 198 (788)
. ..+ ..+++|++|+|+. +. +..+...+ ..+++|++|+|++|......+..+. .+++|++|+++.
T Consensus 209 ~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~ 288 (362)
T 2ra8_A 209 VVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISA 288 (362)
T ss_dssp HHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCS
T ss_pred HHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCC
Confidence 1 233 3688888888853 11 22232222 3478888888888743333333332 577888888888
Q ss_pred CcCccc-----CCccCcCCCCcceeCceEeC
Q 003899 199 VDSLEE-----MPKGFGKLTCLLTLGTFVVG 224 (788)
Q Consensus 199 ~~~l~~-----~p~~i~~l~~L~~L~~~~~~ 224 (788)
|. +.. ++.++..+++|+.|++..+.
T Consensus 289 n~-L~d~G~~~L~~~L~~l~~L~~L~L~~n~ 318 (362)
T 2ra8_A 289 GV-LTDEGARLLLDHVDKIKHLKFINMKYNY 318 (362)
T ss_dssp SC-CBHHHHHHHHTTHHHHTTCSEEECCSBB
T ss_pred CC-CChHHHHHHHhhcccCCcceEEECCCCc
Confidence 77 443 44555677888888876553
No 160
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.59 E-value=0.003 Score=66.18 Aligned_cols=59 Identities=14% Similarity=0.051 Sum_probs=30.2
Q ss_pred cCCCCCccEEEeccCCc--ceecCCcCCCCccEEeccccccceeeccccccCCCCccEEEEec
Q 003899 447 IQCLPALSELQIDGCER--VVFSSPIDLSSLKSVHLAYVANEVVLAGLFEQGLPKLENLVIVE 507 (788)
Q Consensus 447 ~~~~~~L~~L~l~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~ 507 (788)
|..+.+|+.+.+.++.. .....+.++.+|+.+.+.. .++.+....|..+.+|+.+.+..
T Consensus 282 F~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~--~l~~I~~~aF~~C~~L~~i~ip~ 342 (379)
T 4h09_A 282 CSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPT--ALKTIQVYAFKNCKALSTISYPK 342 (379)
T ss_dssp TTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCCCCCCT
T ss_pred cccccccccccccccccceehhhhhcCCCCCCEEEcCc--cccEEHHHHhhCCCCCCEEEECC
Confidence 33444445555444331 1123344455666666543 35556666666666777666643
No 161
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=97.09 E-value=0.00015 Score=80.05 Aligned_cols=46 Identities=9% Similarity=0.156 Sum_probs=39.7
Q ss_pred ChhHHHHHHHHHHhCcCCcccCC-CCCcEEEchhHHHHHHHHhcCceE
Q 003899 1 MEGLGREFVRELHSRSLFQQSSK-DASRFVMHDLINDLAWWAAGEMCF 47 (788)
Q Consensus 1 ~ed~g~~~~~eL~~r~ll~~~~~-~~~~~~mHdlv~d~a~~i~~~~~~ 47 (788)
+||+|+ ||++|++||||+.... ...+|+|||+|||+|++++++++.
T Consensus 427 ~~~~~~-~l~~L~~rsLl~~~~~~~~~~~~mHdlv~~~a~~~~~~~~~ 473 (549)
T 2a5y_B 427 DDEVAD-RLKRLSKRGALLSGKRMPVLTFKIDHIIHMFLKHVVDAQTI 473 (549)
T ss_dssp THHHHH-HHHHTTTBSSCSEEECSSSCEEECCHHHHHHHHTTSCTHHH
T ss_pred HHHHHH-HHHHHHHcCCeeEecCCCceEEEeChHHHHHHHHHHHHHHH
Confidence 478888 9999999999998753 456899999999999999988764
No 162
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=95.78 E-value=0.012 Score=50.27 Aligned_cols=51 Identities=20% Similarity=0.235 Sum_probs=36.6
Q ss_pred EEEccCCcCcc--cccccccCCCCCceeeccCCcccccc-hhhhccccCcEEEccCc
Q 003899 122 VFSLHGYSNII--ELPNEIENLKHLRFLNLSRTSIQILP-ESINSLYNLNTILLEDC 175 (788)
Q Consensus 122 ~L~L~~~~~l~--~lp~~~~~l~~L~~L~L~~~~i~~lp-~~i~~L~~L~~L~L~~~ 175 (788)
+++.+++ +++ .+|..+. .+|++|+|++|.|+.+| ..|..+.+|++|+|++|
T Consensus 12 ~v~Cs~~-~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 65 (130)
T 3rfe_A 12 LVDCGRR-GLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGAN 65 (130)
T ss_dssp EEECCSS-CCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSS
T ss_pred EEEeCCC-CCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCC
Confidence 5677777 777 7775442 35788888888888885 44567778888888777
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=94.85 E-value=0.028 Score=47.96 Aligned_cols=51 Identities=29% Similarity=0.358 Sum_probs=38.7
Q ss_pred EEEEcCCCCCcc--cCCC-CCCCCCeEecCCCCCcccchhh-cCCCCCCCceecccCC
Q 003899 682 NLSIGGGYPDLL--SSPP-FPASLTELWISDMPDLECLSSI-SENLTSLEFLYLIDCP 735 (788)
Q Consensus 682 ~L~l~~~~~~~~--~~~~-~~~~L~~L~l~~~~~l~~l~~~-~~~l~~L~~L~l~~c~ 735 (788)
.++-++ ..+. .+|. .+.+|+.|+|++ |.++.||.. +..+++|+.|+|.+||
T Consensus 12 ~v~Cs~--~~L~~~~vP~~lp~~l~~L~Ls~-N~l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 12 LVDCGR--RGLTWASLPTAFPVDTTELVLTG-NNLTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp EEECCS--SCCCTTTSCSCCCTTCSEEECTT-SCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred EEEeCC--CCCccccCCCCCCcCCCEEECCC-CcCCccChhhhhhccccCEEEecCCC
Confidence 344444 5566 7776 667888888888 688888876 7778889999998886
No 164
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=93.61 E-value=0.17 Score=46.28 Aligned_cols=86 Identities=20% Similarity=0.213 Sum_probs=49.4
Q ss_pred HhCCCCCeeEEEccCCcCccc-----ccccccCCCCCceeeccCCccc-----ccchhhhccccCcEEEccCccchh---
Q 003899 113 MLMNLPRLRVFSLHGYSNIIE-----LPNEIENLKHLRFLNLSRTSIQ-----ILPESINSLYNLNTILLEDCYQLK--- 179 (788)
Q Consensus 113 ~~~~l~~Lr~L~L~~~~~l~~-----lp~~~~~l~~L~~L~L~~~~i~-----~lp~~i~~L~~L~~L~L~~~~~l~--- 179 (788)
.+..-+.|+.|+|+++..+.. +-+.+..=..|+.|+|++|.|. .|-..+..=+.|+.|+|++| .+.
T Consensus 36 ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N-~Ig~~G 114 (197)
T 1pgv_A 36 LREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESN-FLTPEL 114 (197)
T ss_dssp HHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSS-BCCHHH
T ss_pred HHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCC-cCCHHH
Confidence 556667777777776424432 2244555566777777777775 23344445566777777777 332
Q ss_pred --hchhhhhcccCCceEecCCC
Q 003899 180 --KLCNDMGNLKKLRHLKSSNV 199 (788)
Q Consensus 180 --~lp~~i~~L~~L~~L~l~~~ 199 (788)
.+-+.+..-+.|++|+++++
T Consensus 115 a~ala~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 115 LARLLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp HHHHHHHTTTTCCCSEEECCCC
T ss_pred HHHHHHHHhhCCceeEEECCCC
Confidence 22233444455777777654
No 165
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=92.07 E-value=0.08 Score=65.01 Aligned_cols=44 Identities=16% Similarity=0.165 Sum_probs=37.3
Q ss_pred hhHHHHHHHHHHhCcCCcccCC-CCCcEEEchhHHHHHHHHhcCc
Q 003899 2 EGLGREFVRELHSRSLFQQSSK-DASRFVMHDLINDLAWWAAGEM 45 (788)
Q Consensus 2 ed~g~~~~~eL~~r~ll~~~~~-~~~~~~mHdlv~d~a~~i~~~~ 45 (788)
++.++++|++|+++||++.... ...+|+|||+||++|+..+.++
T Consensus 408 ~~~~~~~l~~L~~~sl~~~~~~~~~~~~~~h~l~~~~~~~~~~~~ 452 (1249)
T 3sfz_A 408 TEEVEDILQEFVNKSLLFCNRNGKSFCYYLHDLQVDFLTEKNRSQ 452 (1249)
T ss_dssp HHHHHHHHHHHHHTTSCEEEESSSSEEEECCHHHHHHHHHHTGGG
T ss_pred HHHHHHHHHHHHhccceEEecCCCceEEEecHHHHHHHHhhhhHH
Confidence 5788999999999999997652 2336999999999999998765
No 166
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=90.87 E-value=0.36 Score=44.14 Aligned_cols=114 Identities=19% Similarity=0.140 Sum_probs=76.4
Q ss_pred cCCCceeEEEeccCCccccchhhhhHHHHhCCCCCeeEEEccCCcCccc-----ccccccCCCCCceeeccCCcccc---
Q 003899 85 CDVEHLRTFLPVNLSNYRINYLAWSVLQMLMNLPRLRVFSLHGYSNIIE-----LPNEIENLKHLRFLNLSRTSIQI--- 156 (788)
Q Consensus 85 ~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~l~~-----lp~~~~~l~~L~~L~L~~~~i~~--- 156 (788)
.+-+.|+.|.+.++...... -...+-..+..-+.|+.|+|++| .+.. +-+.+..=+.|++|+|++|.|..
T Consensus 38 ~~n~~L~~L~L~~nn~igd~-ga~~la~aL~~N~~L~~L~L~~n-~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga 115 (197)
T 1pgv_A 38 EDDTDLKEVNINNMKRVSKE-RIRSLIEAACNSKHIEKFSLANT-AISDSEARGLIELIETSPSLRVLNVESNFLTPELL 115 (197)
T ss_dssp TTCSSCCEEECTTCCSSCHH-HHHHHHHHHTTCSCCCEEECTTS-CCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHH
T ss_pred hcCCCccEEECCCCCCCCHH-HHHHHHHHHhhCCCcCEEEccCC-CCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHH
Confidence 45678888888764110000 01223447888899999999999 7764 33445556789999999999973
Q ss_pred --cchhhhccccCcEEEccCccc--hh-----hchhhhhcccCCceEecCCCc
Q 003899 157 --LPESINSLYNLNTILLEDCYQ--LK-----KLCNDMGNLKKLRHLKSSNVD 200 (788)
Q Consensus 157 --lp~~i~~L~~L~~L~L~~~~~--l~-----~lp~~i~~L~~L~~L~l~~~~ 200 (788)
+-+.+..=+.|+.|+|++|.. +. .+-..+..-+.|+.|+++.+.
T Consensus 116 ~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~ 168 (197)
T 1pgv_A 116 ARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS 168 (197)
T ss_dssp HHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred HHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCC
Confidence 344555566799999986521 22 344446666889999988765
No 167
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=85.75 E-value=0.42 Score=55.18 Aligned_cols=36 Identities=19% Similarity=0.188 Sum_probs=30.8
Q ss_pred hHHHHHHHHHHhCcCCcccCCCCCcEEEchhHHHHHH
Q 003899 3 GLGREFVRELHSRSLFQQSSKDASRFVMHDLINDLAW 39 (788)
Q Consensus 3 d~g~~~~~eL~~r~ll~~~~~~~~~~~mHdlv~d~a~ 39 (788)
+.|+++|++|++||||+... ...+|+|||++++++.
T Consensus 402 edAe~~L~eLvdRSLLq~d~-~~~rYrMHDLllELr~ 437 (1221)
T 1vt4_I 402 SDVMVVVNKLHKYSLVEKQP-KESTISIPSIYLELKV 437 (1221)
T ss_dssp HHHHHHHHHHHTSSSSSBCS-SSSEEBCCCHHHHHHH
T ss_pred HHHHHHHHHHHhhCCEEEeC-CCCEEEehHHHHHHhc
Confidence 46899999999999999853 4678999999999663
No 168
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=82.97 E-value=0.6 Score=51.79 Aligned_cols=40 Identities=20% Similarity=0.251 Sum_probs=33.0
Q ss_pred hHHHHHHHHHHhCcCCcccCC-CCCcEEEchhHHHHHHHHh
Q 003899 3 GLGREFVRELHSRSLFQQSSK-DASRFVMHDLINDLAWWAA 42 (788)
Q Consensus 3 d~g~~~~~eL~~r~ll~~~~~-~~~~~~mHdlv~d~a~~i~ 42 (788)
+.+++++++|+++|||+.... ....|+|||+||++++...
T Consensus 409 ~~~~~~l~~L~~~~Ll~~~~~~~~~~~~~H~lv~~~~~~~~ 449 (591)
T 1z6t_A 409 EEVEDILQEFVNKSLLFCDRNGKSFRYYLHDLQVDFLTEKN 449 (591)
T ss_dssp HHHHHHHHHHHHTTSSEEEEETTEEEEECCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCcCeEEecCCCccEEEEcHHHHHHHHhhh
Confidence 467899999999999986542 3347999999999999874
No 169
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=38.49 E-value=35 Score=26.88 Aligned_cols=44 Identities=18% Similarity=0.079 Sum_probs=28.2
Q ss_pred CcccccccCCCCCccEEEEcCCCCCcccCCCCCCCCCeEecCCCCCcccchhh-cCCCCCCCceecccC
Q 003899 667 KPLLEWGLNRFTSLRNLSIGGGYPDLLSSPPFPASLTELWISDMPDLECLSSI-SENLTSLEFLYLIDC 734 (788)
Q Consensus 667 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~-~~~l~~L~~L~l~~c 734 (788)
+.+....|.++++|+.+.|-. .++.|... |.+|.+|+.+.+..-
T Consensus 9 t~I~~~aF~~c~~L~~i~iP~------------------------~v~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 9 VGMDKSLFAGNTVIREITVQP------------------------NIGLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CSSCSCTTTTCTTCCCEEECT------------------------TSSCCCTTSSTTCTTCCCEEECCS
T ss_pred CEecHHHhcCCCCCcEEEcCC------------------------chheEcHHHHhccCCccEEEEcCC
Confidence 344445677777777776665 45555443 777788888877653
Done!