BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 003901
(788 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2VNC|A Chain A, Crystal Structure Of Glycogen Debranching Enzyme Trex From
Sulfolobus Solfataricus
pdb|2VNC|B Chain B, Crystal Structure Of Glycogen Debranching Enzyme Trex From
Sulfolobus Solfataricus
pdb|2VR5|A Chain A, Crystal Structure Of Trex From Sulfolobus Solfataricus In
Complex With Acarbose Intermediate And Glucose
pdb|2VR5|B Chain B, Crystal Structure Of Trex From Sulfolobus Solfataricus In
Complex With Acarbose Intermediate And Glucose
pdb|2VUY|A Chain A, Crystal Structure Of Glycogen Debranching Exzyme Trex From
Sulfolobus Solfatarius
pdb|2VUY|B Chain B, Crystal Structure Of Glycogen Debranching Exzyme Trex From
Sulfolobus Solfatarius
Length = 718
Score = 440 bits (1131), Expect = e-123, Method: Compositional matrix adjust.
Identities = 285/718 (39%), Positives = 381/718 (53%), Gaps = 107/718 (14%)
Query: 93 GYPTPFGATL--RDGGVNFSIFSSNAVSATLCLITLSDLQENKVTEEIALDSFANKTGDV 150
G P P G+ D GVNFS+FS NA L L +L++ + K E+ NKTGD+
Sbjct: 15 GDPYPLGSNWIEDDDGVNFSLFSENAEKVELLLYSLTNQKYPKEIIEVK-----NKTGDI 69
Query: 151 WHVFLKGDFKDMLYGYKFDGKFSPQEGHYFDPTKIVLDPYAKAV-----ISRAQFGVLGP 205
WHVF+ G LY Y+ G + P+ G F+P K+++DPYAKA+ + A FG
Sbjct: 70 WHVFVPGLRPGQLYAYRVYGPYKPELGLRFNPNKVLIDPYAKAINGSVIWNDAVFGYKIG 129
Query: 206 DEN------------CWPQMACLVPTPEDEFDWEGDLPLK---YPQRDLIIYEVHVRGFT 250
D+N P+ + P F+W+ + +K P +D +IYEVHV+GFT
Sbjct: 130 DQNQDLTYDERDSGEYVPKSVVINPY----FEWDDEDFIKGKKVPLKDTVIYEVHVKGFT 185
Query: 251 RHESSKTEH-PGTYLGVV--EKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDY--- 304
+ E+ GTY G+ + + +LKDLGI +ELMP F + + + + L +Y
Sbjct: 186 KLRLDLPENIRGTYEGLASEQMISYLKDLGITTVELMPVFHFIDQRFLT-DKGLTNYWGY 244
Query: 305 ----------NYSSAGIRNCGHDAINEFKLLVREAHKRGIEVVMDVVFNHTVEGNDKGPI 354
YSS G C + FK +V E H GIEV++DVV+NHT EGN GP
Sbjct: 245 DPINFFSPECRYSSTG---CLGGQVLSFKKMVNELHNAGIEVIIDVVYNHTAEGNHLGPT 301
Query: 355 LSFRGVDNSVYYMLAPKGEFY--NYSGCGNTFNCNHPVVRQFIVDCLRYWVTEMHVDGFR 412
LSFRG+DN+ YYML P + Y +++G GNT N +HP V Q ++D LRYWVTEMHVDGFR
Sbjct: 302 LSFRGIDNTAYYMLQPDNKRYYLDFTGTGNTLNLSHPRVIQMVLDSLRYWVTEMHVDGFR 361
Query: 413 FDLASIMTRGSSLWDSVNVYGIPIEGDLLTTGTPLRSPPLIDLISNDPILRGVKLIAEAW 472
FDLA+ + R + +N + I ++ DPIL VKLIAE W
Sbjct: 362 FDLAAALARELYSVNMLNTFFIALQ--------------------QDPILSQVKLIAEPW 401
Query: 473 DTG-GLYQVGIFPHWGIWSEWNGKYRDIVRQFIKGTDGFAGAFAECLCGSPNLYQGGGRK 531
D G G YQVG FP+ W+EWNGKYRD +R+F +G A L GSP++Y G +
Sbjct: 402 DVGQGGYQVGNFPYQ--WAEWNGKYRDSIRRFWRGEALPYSEIANRLLGSPDIYLGNNKT 459
Query: 532 PWNSINFVCAHDGFSLADLVSYNQKHNLANGEDNNDGETHNNSWNCGQEGEFANILVKKL 591
P+ SIN+V +HDGF+L DLVSYNQKHN ANG +N DG N SWNCG EG + V
Sbjct: 460 PFASINYVTSHDGFTLEDLVSYNQKHNEANGFNNQDGMNENYSWNCGAEGPTNDQNVVIC 519
Query: 592 RRRQMRNFFLCLMVSQGVPMISMGDEYGHTKGGNNNTYCHDNDINYFRWDKKEESKSDFF 651
R +Q RNF + L+VSQG PMI GDE T+ GNNN +C DN+I +F W+ +E KS F
Sbjct: 520 REKQKRNFMITLLVSQGTPMILGGDELSRTQRGNNNAFCQDNEITWFDWN-LDERKSKFL 578
Query: 652 RFCCLLTK-------FRHECESLG--LSDFPTADRLQW--HGHAPGLPDWSDKSRFVAFT 700
F + + FR E G L P D + G WS ++ V F
Sbjct: 579 EFVKKMIQFYRAHPAFRRERYFQGKKLFGMPLKDVTFYTLEGREVDEKTWSSPTQLVIFV 638
Query: 701 LIDSVKGEI------------YVAFNASHLPVIISLPKRPGYRWEPLVDTS----KPE 742
L SV EI + NA+ V + PK +WE ++ + KPE
Sbjct: 639 LEGSVMDEINMYGERIADDSFLIILNANPNNVKVKFPKG---KWELVISSYLREIKPE 693
>pdb|2WSK|A Chain A, Crystal Structure Of Glycogen Debranching Enzyme Glgx From
Escherichia Coli K-12
Length = 657
Score = 378 bits (971), Expect = e-105, Method: Compositional matrix adjust.
Identities = 222/599 (37%), Positives = 316/599 (52%), Gaps = 57/599 (9%)
Query: 89 QVSKGYPTPFGATLRDGGVNFSIFSSNAVSATLCLITLSDLQENKVTEEIALDSFANKTG 148
Q++ G P P GA GVNF++FS++A LC+ ++ QE++ +G
Sbjct: 3 QLAIGKPAPLGAHYDGQGVNFTLFSAHAERVELCVFD-ANGQEHRY-------DLPGHSG 54
Query: 149 DVWHVFLKGDFKDMLYGYKFDGKFSPQEGHYFDPTKIVLDPYAKAVISRAQFGVL---GP 205
D+WH +L + YGY+ G + P EGH F+P K+++DP A+ + + L G
Sbjct: 55 DIWHGYLPDARPGLRYGYRVHGPWQPAEGHRFNPAKLLIDPCARQIDGEFKDNPLLHAGH 114
Query: 206 DENCWPQMACLVP---TPEDEFDWEGDLPLKYPQRDLIIYEVHVRGFTR-HESSKTEHPG 261
+E + A + P D +DWE D P + P IIYE HV+G T H E G
Sbjct: 115 NEPDYRDNAAIAPKCVVVVDHYDWEDDAPPRTPWGSTIIYEAHVKGLTYLHPEIPVEIRG 174
Query: 262 TY--LGVVEKLDHLKDLGINCLELMPCHEFNE---------LEYFSYNSVLGDYNYSSAG 310
TY LG +++LK LGI LEL+P +F Y+ YN V ++
Sbjct: 175 TYKALGHPVMINYLKQLGITALELLPVAQFASEPRLQRMGLSNYWGYNPVA---MFALHP 231
Query: 311 IRNCGHD-AINEFKLLVREAHKRGIEVVMDVVFNHTVEGNDKGPILSFRGVDNSVYYMLA 369
C + A++EF+ ++ HK GIEV++D+V NH+ E + GP+ S RG+DN YY +
Sbjct: 232 AYACSPETALDEFRDAIKALHKAGIEVILDIVLNHSAELDLDGPLFSLRGIDNRSYYWIR 291
Query: 370 PKGEFYNYSGCGNTFNCNHPVVRQFIVDCLRYWVTEMHVDGFRFDLASIMTRGSSLWDSV 429
G+++N++GCGNT N +HP V + CLRYWV HVDGFRFDLA++M R
Sbjct: 292 EDGDYHNWTGCGNTLNLSHPAVVDYASACLRYWVETCHVDGFRFDLAAVMGRTPEF---- 347
Query: 430 NVYGIPIEGDLLTTGTPLRSPPLIDLISNDPILRGVKLIAEAWDTG-GLYQVGIFPHWGI 488
+ PL I N P+L VKLIAE WD G YQVG FP +
Sbjct: 348 -----------------RQDAPLFTAIQNCPVLSQVKLIAEPWDIAPGGYQVGNFP--PL 388
Query: 489 WSEWNGKYRDIVRQFIKGTDGFAGAFAECLCGSPNLYQGGGRKPWNSINFVCAHDGFSLA 548
++EWN +RD R+F D GAFA S ++++ GR P +IN V AHDGF+L
Sbjct: 389 FAEWNDHFRDAARRFWLHYDLPLGAFAGRFAASSDVFKRNGRLPSAAINLVTAHDGFTLR 448
Query: 549 DLVSYNQKHNLANGEDNNDGETHNNSWNCGQEGEFANILVKKLRRRQMRNFFLCLMVSQG 608
D V +N KHN ANGE+N DG +N S N G+EG ++ + + RR + L++SQG
Sbjct: 449 DCVCFNHKHNEANGEENRDGTNNNYSNNHGKEGLGGSLDLVERRRDSIHALLTTLLLSQG 508
Query: 609 VPMISMGDEYGHTKGGNNNTYCHDNDINYFRWDKKEESKSDFFRFCCLLTKFRHECESL 667
PM+ GDE+GH++ GNNN YC DN + + W ++ S F L R +L
Sbjct: 509 TPMLLAGDEHGHSQHGNNNAYCQDNQLTWLDW---SQASSGLTAFTAALIHLRKRIPAL 564
>pdb|1BF2|A Chain A, Structure Of Pseudomonas Isoamylase
Length = 750
Score = 265 bits (676), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 204/622 (32%), Positives = 290/622 (46%), Gaps = 78/622 (12%)
Query: 177 GHYFDPTKIVLDPYAKAV---------------ISRAQFGVLGPDENCW-PQMACLVPTP 220
G F+P K++LDPYA+ V S A + D + P+ LVP+
Sbjct: 108 GDRFNPNKLLLDPYAQEVSQDPLNPSNQNGNVFASGASYRTT--DSGIYAPKGVVLVPST 165
Query: 221 EDEFDWEGDLPLKYPQRDLIIYEVHVRGFTRHESS-KTEHPGTYLGVVEKLDHLKDLGIN 279
+ G P + Q+D +IYEVHVRGFT ++S ++ GTY G K +L LG+
Sbjct: 166 QST----GTKPTR-AQKDDVIYEVHVRGFTEQDTSIPAQYRGTYYGAGLKASYLASLGVT 220
Query: 280 CLELMPCHEF---------------NELEYFSYNSVLGDYNYSSAGIRNCGHDAINEFKL 324
+E +P E N Y + N D Y+ EF+
Sbjct: 221 AVEFLPVQETQNDANDVVPNSDANQNYWGYMTENYFSPDRRYA---YNKAAGGPTAEFQA 277
Query: 325 LVREAHKRGIEVVMDVVFNHTVEGND-------KGPILSFRGVDNSVYYMLAPKGE-FYN 376
+V+ H GI+V MDVV+NHT EG I S+RG+DN+ YY L + FY+
Sbjct: 278 MVQAFHNAGIKVYMDVVYNHTAEGGTWTSSDPTTATIYSWRGLDNATYYELTSGNQYFYD 337
Query: 377 YSGCGNTFNCNHPVVRQFIVDCLRYWVTEMHVDGFRFDLASIMTRGSSLWDSVNVYGIPI 436
+G G FN + V + IVD L YW M VDGFRFDLAS++ G+S + P
Sbjct: 338 NTGIGANFNTYNTVAQNLIVDSLAYWANTMGVDGFRFDLASVL--GNSCLNGAYTASAPN 395
Query: 437 EGDLLTTGTPLRSPPLIDLISNDPILR------GVKLIAEAWDTGG-LYQVGIFPHWGIW 489
+ S I+ I + +R G+ L AE W GG YQ+G FP W
Sbjct: 396 CPNGGYNFDAADSNVAINRILREFTVRPAAGGSGLDLFAEPWAIGGNSYQLGGFPQ--GW 453
Query: 490 SEWNGKYRDIVRQF---IKGTDGFAGAFAECLCGSPNLYQGGGRKPWNSINFVCAHDGFS 546
SEWNG +RD +RQ + + A GS NL+Q GR PWNSINF+ HDG +
Sbjct: 454 SEWNGLFRDSLRQAQNELGSMTIYVTQDANDFSGSSNLFQSSGRSPWNSINFIDVHDGMT 513
Query: 547 LADLVSYNQKHN-LANGEDNNDGETHNN-SWNCGQEGEFANILVKKLRRRQMRNFFLCLM 604
L D+ S N +N A +DG T N SW+ +G A +RR R M
Sbjct: 514 LKDVYSCNGANNSQAWPYGPSDGGTSTNYSWD---QGMSAGTGAAVDQRRAARTGMAFEM 570
Query: 605 VSQGVPMISMGDEYGHTKGGNNNTYCHDNDINYFRWDKKEESKSDFFRFCCLLTKFRHEC 664
+S G P++ GDEY T NNN Y D+ N+ + + +S+F+ F L FR
Sbjct: 571 LSAGTPLMQGGDEYLRTLQCNNNAYNLDSSANWLTYSWTTD-QSNFYTFAQRLIAFRKAH 629
Query: 665 ESLGLSDFPTADRLQWHGHAPGLPD---WSDKSRF-VAFTLIDSVKGE---IYVAFNASH 717
+L S + + +L W+ + + D W++ S + +A+ + G+ IYVA+N
Sbjct: 630 PALRPSSWYSGSQLTWYQPSGAVADSNYWNNTSNYAIAYAINGPSLGDSNSIYVAYNGWS 689
Query: 718 LPVIISLPKRP-GYRWEPLVDT 738
V +LP P G +W + DT
Sbjct: 690 SSVTFTLPAPPSGTQWYRVTDT 711
>pdb|2WAN|A Chain A, Pullulanase From Bacillus Acidopullulyticus
Length = 921
Score = 164 bits (416), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 159/603 (26%), Positives = 266/603 (44%), Gaps = 116/603 (19%)
Query: 110 SIFSSNAVSATLCLITLSDLQ-------ENKVTEEIALDSFANKTGDVWHVFLKGDFKDM 162
+++S +A S + T S++Q + +T+++ + N T W + + G+ ++
Sbjct: 320 NVYSKDATSFRVWAPTASNVQLLLYNSEKGSITKQLEMQKSDNGT---WKLQVSGNLENW 376
Query: 163 LYGYKFDGKFSPQEGHYFDPTKIVLDPYAKAVISRAQFGVLGPDENCWPQMACLVPTPED 222
Y Y+ + T+ +DPYA+A+ A G++ L T D
Sbjct: 377 YYLYQVTVNGT---------TQTAVDPYARAISVNATRGMI----------VDLKAT--D 415
Query: 223 EFDWEGDLPLKYPQR--DLIIYEVHVRGFTRHESSKTEHPGTYLGVVEK----------- 269
W+GD + P D +IYE HVR F+ +S ++ G YL E
Sbjct: 416 PAGWQGDHE-QTPANPVDEVIYEAHVRDFSIDANSGMKNKGKYLAFTEHGTKGPDHVKTG 474
Query: 270 LDHLKDLGINCLELMPCHEFN---ELEYFSYNSVLGDYNYS----SAGIRNCGHDAINEF 322
+D LK+LGI ++L P EFN E + +YN NY+ + G I E
Sbjct: 475 IDSLKELGITTVQLQPVEEFNSIDETQPDTYNWGYDPRNYNVPEGAYATTPEGTARITEL 534
Query: 323 KLLVREAHKRGIEVVMDVVFNHTVEGNDKGPILSFRGVDNSVYYMLAPKGEFYNYSGCGN 382
K L++ H++ I V MDVV+NHT + + F + YY G + N SG GN
Sbjct: 535 KQLIQSLHQQRIGVNMDVVYNHTFDV----MVSDFDKIVPQYYYRTDSNGNYTNGSGXGN 590
Query: 383 TFNCNHPVVRQFIVDCLRYWVTEMHVDGFRFDLASI-----MTRGSSLWDSVNVYGIPIE 437
F HP+ ++F++D + YWV E HVDGFRFDL ++ M + S+ ++N GI +
Sbjct: 591 EFATEHPMAQKFVLDSVNYWVNEYHVDGFRFDLMALLGKDTMAKISNELHAINP-GIVLY 649
Query: 438 GDLLTTGTPLRSPPLIDLISNDPILRGVKLIAEAWDTGGLYQVGIFPHWGIWSEWNGKYR 497
G+ T GT L S+ + +G + GL +G+F I + +G
Sbjct: 650 GEPWTGGTS-------GLSSDQLVTKGQQ--------KGL-GIGVFND-NIRNGLDGNVF 692
Query: 498 DIVRQ-FIKGTDGFAGAFAECLCGSPNLYQGGGRKPWNSINFVCAHDGFSLADLVSYNQK 556
D Q F G + GS Q P +IN+V +HD +L D +
Sbjct: 693 DKTAQGFATGDPNQVDVIKNGVIGS---IQDFTSAPSETINYVTSHDNMTLWDKI----- 744
Query: 557 HNLANGEDNNDGETHNNSWNCGQEGEFANILVKKLRRRQMRNFFLCLMVSQGVPMISMGD 616
LA+ + + + +++ ++ + + SQGVP + G+
Sbjct: 745 --LASNPSDTEAD--------------------RIKMDELAH--AVVFTSQGVPFMQGGE 780
Query: 617 EYGHTKGGNNNTYCHDNDINYFRWDKKEESKSDFFRFCCLLTKFRHECESLGLSDFPTAD 676
E TKGGN+N+Y + +N F W +K + K D F + + R++ + ++ TAD
Sbjct: 781 EMLRTKGGNDNSYNAGDSVNQFDWSRKAQFK-DVFDYFSSMIHLRNQHPAFRMT---TAD 836
Query: 677 RLQ 679
+++
Sbjct: 837 QIK 839
>pdb|2E8Y|A Chain A, Crystal Structure Of Pullulanase Type I From Bacillus
Subtilis Str. 168
pdb|2E8Y|B Chain B, Crystal Structure Of Pullulanase Type I From Bacillus
Subtilis Str. 168
pdb|2E8Z|A Chain A, Crystal Structure Of Pullulanase Type I From Bacillus
Subtilis Str. 168 Complexed With Alpha-Cyclodextrin
pdb|2E8Z|B Chain B, Crystal Structure Of Pullulanase Type I From Bacillus
Subtilis Str. 168 Complexed With Alpha-Cyclodextrin
pdb|2E9B|A Chain A, Crystal Structure Of Pullulanase Type I From Bacillus
Subtilis Str. 168 Complexed With Maltose
pdb|2E9B|B Chain B, Crystal Structure Of Pullulanase Type I From Bacillus
Subtilis Str. 168 Complexed With Maltose
Length = 718
Score = 133 bits (334), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 151/580 (26%), Positives = 235/580 (40%), Gaps = 111/580 (19%)
Query: 186 VLDPYAKAVISRAQFGVLGPDENCWPQMACLVPTPEDEFDWEGDL-PLKYPQRDLIIYEV 244
+D YAKAV + GV+ L P D+ W L P +P D +IYE
Sbjct: 177 TVDQYAKAVTVNGEKGVV------------LRP---DQMKWTAPLKPFSHPV-DAVIYET 220
Query: 245 HVRGFTRHESSKTEHPGTYLGVVEK-----------LDHLKDLGINCLELMPCHEFNELE 293
H+R F+ HE+S + G YL + E L ++K+LG+ +EL+P ++F ++
Sbjct: 221 HLRDFSIHENSGMINKGKYLALTETDTQTANGSSSGLAYVKELGVTHVELLPVNDFAGVD 280
Query: 294 YFSYNSVLGDYNYS---------SAGIRNCGHDAIN---EFKLLVREAHKRGIEVVMDVV 341
L YN+ + HD E K ++ H+ G+ V++DVV
Sbjct: 281 E---EKPLDAYNWGYNPLHFFAPEGSYASNPHDPQTRKTELKQMINTLHQHGLRVILDVV 337
Query: 342 FNHTVEGNDKGPILSFRGVDNSVYYMLAPKGEFYNYSGCGNTFNCNHPVVRQFIVDCLRY 401
FNH V + P F ++ G+ N +G GN + R+FI DC+ Y
Sbjct: 338 FNH-VYKRENSP---FEKTVPGYFFRHDECGKPSNGTGVGNDIASERRMARKFIADCVVY 393
Query: 402 WVTEMHVDGFRFDLASIMTRGSSLWDSVNVY----GIPIEGDLLTTGTPLRSPPLIDLIS 457
W+ E +VDGFRFDL I+ + L+ GI + G+ TPL L +
Sbjct: 394 WLEEYNVDGFRFDLLGILDIDTVLYMKEKATKAKPGILLFGEGWDLATPLPHEQKAAL-A 452
Query: 458 NDPILRGVKLIAEAW------DTGGLYQVGIFPHWGIWSEWNGKYRDIVRQFIKGTDGFA 511
N P + G+ + + +T L G ++ NG+ V I G+ G+
Sbjct: 453 NAPRMPGIGFFNDMFRDAVKGNTFHLKATG-------FALGNGESAQAVMHGIAGSSGWK 505
Query: 512 GAFAECLCGSPNLYQGGGRKPWNSINFVCAHDGFSLADLVSYNQKHNLANGEDNNDGETH 571
A A + +P SIN+V +HD + D +S+ A ++N+
Sbjct: 506 -ALAPIVP-----------EPSQSINYVESHDNHTFWDKMSF------ALPQEND----- 542
Query: 572 NNSWNCGQEGEFANILVKKLRRRQMRNFFLCLMVSQGVPMISMGDEYGHTKGGNNNTYCH 631
+R + R ++++QGVP I G E+ TK G N+Y
Sbjct: 543 ------------------SRKRSRQRLAVAIILLAQGVPFIHSGQEFFRTKQGVENSYQS 584
Query: 632 DNDINYFRWDKKEESKSDFFRFCCLLTKFRHECESLGLSDFPTADRLQWHGHAPGLPDWS 691
+ IN WD++E K D + L R + L +A +Q H L +
Sbjct: 585 SDSINQLDWDRRETFKED-VHYIRRLISLRKAHPAFRLR---SAADIQRHLECLTLKEHL 640
Query: 692 DKSRFVAFTLIDSVKGEIYVAFNASHLPVIISLPKRPGYR 731
R +D K +I V +AS V LP YR
Sbjct: 641 IAYRLYDLDEVDEWK-DIIVIHHASPDSVEWRLPNDIPYR 679
>pdb|2YA1|A Chain A, Product Complex Of A Multi-Modular Glycogen-Degrading
Pneumococcal Virulence Factor Spua
Length = 1014
Score = 120 bits (300), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 138/571 (24%), Positives = 236/571 (41%), Gaps = 95/571 (16%)
Query: 94 YPTPFGATLRDGG--VNFSIFSSNAVSATLCLITLSDLQENKVTEEIALDSFANKTGDVW 151
Y GA L++ G V+ +++S +A ++ + +D +KV +AL+ T W
Sbjct: 318 YDGKLGADLKEEGKQVDLTLWSPSADKVSVVVYDKND--PDKVVGTVALEKGERGT---W 372
Query: 152 HVFLKGDFKDMLYGYKFDGKFSPQEGHYFDPTKIVLDPYAKAVISRAQFGVLGPDENCWP 211
L D + L F G + + T + LDPYAK++ + D +
Sbjct: 373 KQTL--DSTNKLGITDFTGYYYQYQIERQGKTVLALDPYAKSLAAWNSDDSKIDDAHKVA 430
Query: 212 QMACLVPT---PEDEFDWEGDLPLKYPQRDLIIYEVHVRGFTRHES---SKTEHPGTYLG 265
+ A + P P+D G + + D +IYE HVR FT + T+ GT+
Sbjct: 431 KAAFVDPAKLGPQDLT--YGKIHNFKTREDAVIYEAHVRDFTSDPAIAKDLTKPFGTFEA 488
Query: 266 VVEKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYNYSSAGIRNCGHDAIN----- 320
+EKLD+LKDLG+ ++L+P + + + L DY S++ N G+D N
Sbjct: 489 FIEKLDYLKDLGVTHIQLLPVLSYYFVNELKNHERLSDYASSNSNY-NWGYDPQNYFSLT 547
Query: 321 ---------------EFKLLVREAHKRGIEVVMDVVFNHTVEGNDKGPILSFRGVDNSVY 365
EFK L+ E HKRG+ ++DVV+NHT + + F ++ + Y
Sbjct: 548 GMYSSDPKNPEKRIAEFKNLINEIHKRGMGAILDVVYNHTAK------VDLFEDLEPNYY 601
Query: 366 YMLAPKGEFYNYSGCGNTFNCNHPVVRQFIVDCLRYWVTEMHVDGFRFDLASIMTRGSSL 425
+ + G G G H + ++ ++D ++Y V VDGFRFD+ + ++
Sbjct: 602 HFMDADGTPRTSFGGGR-LGTTHHMTKRLLIDSIKYLVDTYKVDGFRFDM--MGDHDAAS 658
Query: 426 WDSVNVYGIPIEGDLLTTGTPLRSPPLIDLISNDPILRGVKLIAEAWDTGGLYQVGI--- 482
+ + +L+ G R+ + N P + + DT ++ I
Sbjct: 659 IEEAYKAARALNPNLIMLGEGWRTYAGDE---NMPTKAADQDWMKHTDTVAVFSDDIRNN 715
Query: 483 ----FPHWGIWSEWNGKYRDIVRQFIKGTDGFAGAFAECLCGSPNLYQGGGRKPWNSINF 538
+P+ G + G RD+ F + L P ++ P + I +
Sbjct: 716 LKSGYPNEGQPAFITGGKRDVNTIF------------KNLIAQPTNFEADS--PGDVIQY 761
Query: 539 VCAHDGFSLADLVSYNQKHNLANGEDNNDGETHNNSWNCGQEGEFANILVKKLRRRQMRN 598
+ AHD +L D+++ + K + + E N E H R++R
Sbjct: 762 IAAHDNLTLFDIIAQSIKKDPSKAE--NYAEIH----------------------RRLRL 797
Query: 599 FFLCLMVSQGVPMISMGDEYGHTKGGNNNTY 629
L ++ +QG P I G EYG TK N Y
Sbjct: 798 GNLMVLTAQGTPFIHSGQEYGRTKQFRNPAY 828
>pdb|2YA0|A Chain A, Catalytic Module Of The Multi-Modular Glycogen-Degrading
Pneumococcal Virulence Factor Spua
Length = 714
Score = 120 bits (300), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 137/569 (24%), Positives = 234/569 (41%), Gaps = 91/569 (15%)
Query: 94 YPTPFGATLRDGG--VNFSIFSSNAVSATLCLITLSDLQENKVTEEIALDSFANKTGDVW 151
Y GA L++ G V+ +++S +A ++ + +D +KV +AL+ T W
Sbjct: 11 YDGKLGADLKEEGKQVDLTLWSPSADKVSVVVYDKND--PDKVVGTVALEKGERGT---W 65
Query: 152 HVFLKGDFKDMLYGYKFDGKFSPQEGHYFDPTKIVLDPYAKAVISRAQFGVLGPDENCWP 211
L D + L F G + + T + LDPYAK++ + D +
Sbjct: 66 KQTL--DSTNKLGITDFTGYYYQYQIERQGKTVLALDPYAKSLAAWNSDDSKIDDAHKVA 123
Query: 212 QMACLVPTPEDEFDWE-GDLPLKYPQRDLIIYEVHVRGFTRHES---SKTEHPGTYLGVV 267
+ A + P D G + + D +IYE HVR FT + T+ GT+ +
Sbjct: 124 KAAFVDPAKLGPQDLTYGKIHNFKTREDAVIYEAHVRDFTSDPAIAKDLTKPFGTFEAFI 183
Query: 268 EKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYNYSSAGIRNCGHDAIN------- 320
EKLD+LKDLG+ ++L+P + + + L DY S++ N G+D N
Sbjct: 184 EKLDYLKDLGVTHIQLLPVLSYYFVNELKNHERLSDYASSNSNY-NWGYDPQNYFSLTGM 242
Query: 321 -------------EFKLLVREAHKRGIEVVMDVVFNHTVEGNDKGPILSFRGVDNSVYYM 367
EFK L+ E HKRG+ ++DVV+NHT + + F ++ + Y+
Sbjct: 243 YSSDPKNPEKRIAEFKNLINEIHKRGMGAILDVVYNHTAK------VDLFEDLEPNYYHF 296
Query: 368 LAPKGEFYNYSGCGNTFNCNHPVVRQFIVDCLRYWVTEMHVDGFRFDLASIMTRGSSLWD 427
+ G G G H + ++ ++D ++Y V VDGFRFD+ + ++ +
Sbjct: 297 MDADGTPRTSFGGGR-LGTTHHMTKRLLIDSIKYLVDTYKVDGFRFDM--MGDHDAASIE 353
Query: 428 SVNVYGIPIEGDLLTTGTPLRSPPLIDLISNDPILRGVKLIAEAWDTGGLYQVGI----- 482
+ +L+ G R+ + N P + + DT ++ I
Sbjct: 354 EAYKAARALNPNLIMLGEGWRTYAGDE---NMPTKAADQDWMKHTDTVAVFSDDIRNNLK 410
Query: 483 --FPHWGIWSEWNGKYRDIVRQFIKGTDGFAGAFAECLCGSPNLYQGGGRKPWNSINFVC 540
+P+ G + G RD+ F + L P ++ P + I ++
Sbjct: 411 SGYPNEGQPAFITGGKRDVNTIF------------KNLIAQPTNFEADS--PGDVIQYIA 456
Query: 541 AHDGFSLADLVSYNQKHNLANGEDNNDGETHNNSWNCGQEGEFANILVKKLRRRQMRNFF 600
AHD +L D+++ + K + + E N E H R++R
Sbjct: 457 AHDNLTLFDIIAQSIKKDPSKAE--NYAEIH----------------------RRLRLGN 492
Query: 601 LCLMVSQGVPMISMGDEYGHTKGGNNNTY 629
L ++ +QG P I G EYG TK N Y
Sbjct: 493 LMVLTAQGTPFIHSGQEYGRTKQFRNPAY 521
>pdb|2YA2|A Chain A, Catalytic Module Of The Multi-Modular Glycogen-Degrading
Pneumococcal Virulence Factor Spua In Complex With An
Inhibitor
Length = 708
Score = 119 bits (299), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 137/569 (24%), Positives = 234/569 (41%), Gaps = 91/569 (15%)
Query: 94 YPTPFGATLRDGG--VNFSIFSSNAVSATLCLITLSDLQENKVTEEIALDSFANKTGDVW 151
Y GA L++ G V+ +++S +A ++ + +D +KV +AL+ T W
Sbjct: 12 YDGKLGADLKEEGKQVDLTLWSPSADKVSVVVYDKND--PDKVVGTVALEKGERGT---W 66
Query: 152 HVFLKGDFKDMLYGYKFDGKFSPQEGHYFDPTKIVLDPYAKAVISRAQFGVLGPDENCWP 211
L D + L F G + + T + LDPYAK++ + D +
Sbjct: 67 KQTL--DSTNKLGITDFTGYYYQYQIERQGKTVLALDPYAKSLAAWNSDDSKIDDAHKVA 124
Query: 212 QMACLVPTPEDEFDWE-GDLPLKYPQRDLIIYEVHVRGFTRHES---SKTEHPGTYLGVV 267
+ A + P D G + + D +IYE HVR FT + T+ GT+ +
Sbjct: 125 KAAFVDPAKLGPQDLTYGKIHNFKTREDAVIYEAHVRDFTSDPAIAKDLTKPFGTFEAFI 184
Query: 268 EKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYNYSSAGIRNCGHD---------- 317
EKLD+LKDLG+ ++L+P + + + L DY S++ N G+D
Sbjct: 185 EKLDYLKDLGVTHIQLLPVLSYYFVNELKNHERLSDYASSNSNY-NWGYDPQNYFSLTGM 243
Query: 318 ----------AINEFKLLVREAHKRGIEVVMDVVFNHTVEGNDKGPILSFRGVDNSVYYM 367
I EFK L+ E HKRG+ ++DVV+NHT + + F ++ + Y+
Sbjct: 244 YSSDPKNPEKRIAEFKNLINEIHKRGMGAILDVVYNHTAK------VDLFEDLEPNYYHF 297
Query: 368 LAPKGEFYNYSGCGNTFNCNHPVVRQFIVDCLRYWVTEMHVDGFRFDLASIMTRGSSLWD 427
+ G G G H + ++ ++D ++Y V VDGFRFD+ + ++ +
Sbjct: 298 MDADGTPRTSFGGGR-LGTTHHMTKRLLIDSIKYLVDTYKVDGFRFDM--MGDHDAASIE 354
Query: 428 SVNVYGIPIEGDLLTTGTPLRSPPLIDLISNDPILRGVKLIAEAWDTGGLYQVGI----- 482
+ +L+ G R+ + N P + + DT ++ I
Sbjct: 355 EAYKAARALNPNLIMLGEGWRTYAGDE---NMPTKAADQDWMKHTDTVAVFSDDIRNNLK 411
Query: 483 --FPHWGIWSEWNGKYRDIVRQFIKGTDGFAGAFAECLCGSPNLYQGGGRKPWNSINFVC 540
+P+ G + G RD+ F + L P ++ P + I ++
Sbjct: 412 SGYPNEGQPAFITGGKRDVNTIF------------KNLIAQPTNFEADS--PGDVIQYIA 457
Query: 541 AHDGFSLADLVSYNQKHNLANGEDNNDGETHNNSWNCGQEGEFANILVKKLRRRQMRNFF 600
AHD +L D+++ + K + + E N E H R++R
Sbjct: 458 AHDDLTLFDIIAQSIKKDPSKAE--NYAEIH----------------------RRLRLGN 493
Query: 601 LCLMVSQGVPMISMGDEYGHTKGGNNNTY 629
L ++ +QG P I G EYG TK N Y
Sbjct: 494 LMVLTAQGTPFIHSGQEYGRTKQFRNPAY 522
>pdb|3FAW|A Chain A, Crystal Structure Of The Group B Streptococcus Pullulanase
Sap
pdb|3FAX|A Chain A, The Crystal Structure Of Gbs Pullulanase Sap In Complex
With Maltotetraose
Length = 877
Score = 111 bits (277), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 160/708 (22%), Positives = 262/708 (37%), Gaps = 172/708 (24%)
Query: 93 GYPTPFGATLRDGG--VNFSIFSSNAVSATLCLITLSDLQENKVTEEIALDSFANKTGDV 150
Y GA L G V S++S +A S T+ + + +N+V +A V
Sbjct: 130 AYSGNLGAVLNQDGSKVEASLWSPSADSVTMIIYDKDN--QNRV---VATTPLVKNNKGV 184
Query: 151 WHVFLKGDFKDMLYGYK-FDGKFSPQEGHYFDPTKIVLDPYAKAV-----------ISRA 198
W L D G K + G + E +LDPYAK++ I A
Sbjct: 185 WQTIL-----DTKLGIKNYTGYYYLYEIKRGKDKVKILDPYAKSLAEWDSNTVNDDIKTA 239
Query: 199 QFGVLGPDENCWPQMACLVPTPEDEFDWEGDLPLKYPQRDLIIYEVHVRGFTRHES---S 255
+ + P + PQ +++G ++D +IYE HVR FT +S
Sbjct: 240 KAAFVNPSQ-LGPQNLSFAKIA----NFKG-------RQDAVIYEAHVRDFTSDQSLDGK 287
Query: 256 KTEHPGTYLGVVEKLDHLKDLGINCLELMPC------HEFNELEYFSYNSVLGDYN---- 305
GT+ EKLD+L+ LG+ ++L+P +E ++ +Y S +YN
Sbjct: 288 LKNQLGTFAAFSEKLDYLQKLGVTHIQLLPVLSYFYVNEMDKSRSTAYTSSDNNYNWGYD 347
Query: 306 ----YSSAGIRNCG----HDAINEFKLLVREAHKRGIEVVMDVVFNHTVEGNDKGPILSF 357
++ +G+ + I E K L+ + HKRG+ V++DVV+NHT + F
Sbjct: 348 PQSYFALSGMYSEKPKDPSARIAELKQLIHDIHKRGMGVILDVVYNHTAK------TYLF 401
Query: 358 RGVDNSVYYMLAPKGEFYNYSGCGNTFNCNHPVVRQFIVDCLRYWVTEMHVDGFRFDLAS 417
++ + Y+ + G G G H + R+ +VD ++Y +E VDGFRFD+
Sbjct: 402 EDIEPNYYHFMNEDGSPRESFGGGR-LGTTHAMSRRVLVDSIKYLTSEFKVDGFRFDMMG 460
Query: 418 IMTRGSSLWDSVNVYGIPIEGDLLTTGTPLRSPPLIDLISNDPILRGVKLIAEAWDT-GG 476
D+ + +L +P +I +I E W T G
Sbjct: 461 DH-------DAAAI-------ELAYKEAKAINPNMI-------------MIGEGWRTFQG 493
Query: 477 LYQVGIFP---HWGIWSEWNGKYRDIVRQFIK------GTDGFAGAFAECLCG------- 520
+ P W ++ G + D +R +K GT F + L G
Sbjct: 494 DQGKPVKPADQDWMKSTDTVGVFSDDIRNSLKSGFPNEGTPAFITGGPQSLQGIFKNIKA 553
Query: 521 SPNLYQGGGRKPWNSINFVCAHDGFSLADLVSYNQKHNLANGEDNNDGETHNNSWNCGQE 580
P ++ P + + ++ AHD +L D+++ ++ N +E
Sbjct: 554 QPGNFEADS--PGDVVQYIAAHDNLTLHDVIA----------------KSINKDPKVAEE 595
Query: 581 GEFANILVKKLRRRQMRNFFLCLMVSQGVPMISMGDEYGHTKGGNNNTY----------- 629
R++R + ++ SQG I G EYG TK N Y
Sbjct: 596 D----------IHRRLRLGNVMILTSQGTAFIHSGQEYGRTKRLLNPDYMTKVSDDKLPN 645
Query: 630 --------------CHD-----NDINYFRW-----DKKEESKSDFFRFCCLLTKFRHECE 665
HD + IN+F W + K + + L R +
Sbjct: 646 KATLIEAVKEYPYFIHDSYDSSDAINHFDWAAATDNNKHPISTKTQAYTAGLITLRRSTD 705
Query: 666 SLGLSDFPTADRLQWHGHAPGLPDWSDKSRFVAFTLIDSVKGEIYVAF 713
+ DR G D +K +A+ IDS KG+IY F
Sbjct: 706 AFRKLSKAEIDREVSLITEVGQGDIKEKDLVIAYQTIDS-KGDIYAVF 752
>pdb|1EHA|A Chain A, Crystal Structure Of Glycosyltrehalose Trehalohydrolase
From Sulfolobus Solfataricus
Length = 558
Score = 97.1 bits (240), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 68/183 (37%), Positives = 98/183 (53%), Gaps = 33/183 (18%)
Query: 236 QRDLIIYEVHVRGFTRHESSKTEHPGTYLGVVEKLDHLKDLGINCLELMPCHEFNELEYF 295
+ DLIIYE+HV FT GT+ GV+ KLD+LKDLGI +E+MP +F +
Sbjct: 99 KEDLIIYEIHVGTFTPE--------GTFEGVIRKLDYLKDLGITAIEIMPIAQFPGKRDW 150
Query: 296 SYNSVLGDYNYSSAGIRNCGHDAINEFKLLVREAHKRGIEVVMDVVFNHT-VEGN---DK 351
Y+ V Y Y+ ++N + F+ LV EAHK+G+ V++DVV+NH EGN
Sbjct: 151 GYDGV---YLYA---VQNS-YGGPEGFRKLVDEAHKKGLGVILDVVYNHVGPEGNYMVKL 203
Query: 352 GPILSFRGVDNSVYYMLAPKGEFYNYSGCGNTFNCNHPVVRQFIVDCLRYWVTEMHVDGF 411
GP S + P G +N+ + VR+FI++ + YW+ E +VDGF
Sbjct: 204 GPYFSQK--------YKTPWGLTFNFD------DAESDEVRKFILENVEYWIKEYNVDGF 249
Query: 412 RFD 414
R D
Sbjct: 250 RLD 252
>pdb|3VGG|A Chain A, Crystal Structure Of Glycosyltrehalose Trehalohydrolase
(E283q) Complexed With Maltoheptaose
pdb|3VGH|A Chain A, Crystal Structure Of Glycosyltrehalose Trehalohydrolase
(E283q) Complexed With Maltotriosyltrehalose
Length = 558
Score = 97.1 bits (240), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 68/183 (37%), Positives = 98/183 (53%), Gaps = 33/183 (18%)
Query: 236 QRDLIIYEVHVRGFTRHESSKTEHPGTYLGVVEKLDHLKDLGINCLELMPCHEFNELEYF 295
+ DLIIYE+HV FT GT+ GV+ KLD+LKDLGI +E+MP +F +
Sbjct: 99 KEDLIIYEIHVGTFTPE--------GTFEGVIRKLDYLKDLGITAIEIMPIAQFPGKRDW 150
Query: 296 SYNSVLGDYNYSSAGIRNCGHDAINEFKLLVREAHKRGIEVVMDVVFNHT-VEGN---DK 351
Y+ V Y Y+ ++N + F+ LV EAHK+G+ V++DVV+NH EGN
Sbjct: 151 GYDGV---YLYA---VQNS-YGGPEGFRKLVDEAHKKGLGVILDVVYNHVGPEGNYMVKL 203
Query: 352 GPILSFRGVDNSVYYMLAPKGEFYNYSGCGNTFNCNHPVVRQFIVDCLRYWVTEMHVDGF 411
GP S + P G +N+ + VR+FI++ + YW+ E +VDGF
Sbjct: 204 GPYFSQK--------YKTPWGLTFNFD------DAESDEVRKFILENVEYWIKEYNVDGF 249
Query: 412 RFD 414
R D
Sbjct: 250 RLD 252
>pdb|1EH9|A Chain A, Crystal Structure Of Sulfolobus Solfataricus
Glycosyltrehalose Trehalohydrolase
pdb|3VGB|A Chain A, Crystal Structure Of Glycosyltrehalose Trehalohydrolase
(Gthase) From Sulfolobus Solfataricus Km1
Length = 558
Score = 97.1 bits (240), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 68/183 (37%), Positives = 98/183 (53%), Gaps = 33/183 (18%)
Query: 236 QRDLIIYEVHVRGFTRHESSKTEHPGTYLGVVEKLDHLKDLGINCLELMPCHEFNELEYF 295
+ DLIIYE+HV FT GT+ GV+ KLD+LKDLGI +E+MP +F +
Sbjct: 99 KEDLIIYEIHVGTFTPE--------GTFEGVIRKLDYLKDLGITAIEIMPIAQFPGKRDW 150
Query: 296 SYNSVLGDYNYSSAGIRNCGHDAINEFKLLVREAHKRGIEVVMDVVFNHT-VEGN---DK 351
Y+ V Y Y+ ++N + F+ LV EAHK+G+ V++DVV+NH EGN
Sbjct: 151 GYDGV---YLYA---VQNS-YGGPEGFRKLVDEAHKKGLGVILDVVYNHVGPEGNYMVKL 203
Query: 352 GPILSFRGVDNSVYYMLAPKGEFYNYSGCGNTFNCNHPVVRQFIVDCLRYWVTEMHVDGF 411
GP S + P G +N+ + VR+FI++ + YW+ E +VDGF
Sbjct: 204 GPYFSQK--------YKTPWGLTFNFD------DAESDEVRKFILENVEYWIKEYNVDGF 249
Query: 412 RFD 414
R D
Sbjct: 250 RLD 252
>pdb|3VGD|A Chain A, Ctystal Structure Of Glycosyltrehalose Trehalohydrolase
(D252e)
Length = 558
Score = 95.5 bits (236), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 67/183 (36%), Positives = 98/183 (53%), Gaps = 33/183 (18%)
Query: 236 QRDLIIYEVHVRGFTRHESSKTEHPGTYLGVVEKLDHLKDLGINCLELMPCHEFNELEYF 295
+ DLIIYE+HV FT GT+ GV+ KLD+LKDLGI +E+MP +F +
Sbjct: 99 KEDLIIYEIHVGTFTPE--------GTFEGVIRKLDYLKDLGITAIEIMPIAQFPGKRDW 150
Query: 296 SYNSVLGDYNYSSAGIRNCGHDAINEFKLLVREAHKRGIEVVMDVVFNHT-VEGN---DK 351
Y+ V Y Y+ ++N + F+ LV EAHK+G+ V++DVV+NH EGN
Sbjct: 151 GYDGV---YLYA---VQNS-YGGPEGFRKLVDEAHKKGLGVILDVVYNHVGPEGNYMVKL 203
Query: 352 GPILSFRGVDNSVYYMLAPKGEFYNYSGCGNTFNCNHPVVRQFIVDCLRYWVTEMHVDGF 411
GP S + P G +N+ + VR+FI++ + YW+ E +VDGF
Sbjct: 204 GPYFSQK--------YKTPWGLTFNFD------DAESDEVRKFILENVEYWIKEYNVDGF 249
Query: 412 RFD 414
R +
Sbjct: 250 RLE 252
>pdb|3VGE|A Chain A, Crystal Structure Of Glycosyltrehalose Trehalohydrolase
(D252s)
pdb|3VGF|A Chain A, Crystal Structure Of Glycosyltrehalose Trehalohydrolase
(D252s) Complexed With Maltotriosyltrehalose
Length = 558
Score = 95.1 bits (235), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 67/182 (36%), Positives = 97/182 (53%), Gaps = 33/182 (18%)
Query: 236 QRDLIIYEVHVRGFTRHESSKTEHPGTYLGVVEKLDHLKDLGINCLELMPCHEFNELEYF 295
+ DLIIYE+HV FT GT+ GV+ KLD+LKDLGI +E+MP +F +
Sbjct: 99 KEDLIIYEIHVGTFTPE--------GTFEGVIRKLDYLKDLGITAIEIMPIAQFPGKRDW 150
Query: 296 SYNSVLGDYNYSSAGIRNCGHDAINEFKLLVREAHKRGIEVVMDVVFNHT-VEGN---DK 351
Y+ V Y Y+ ++N + F+ LV EAHK+G+ V++DVV+NH EGN
Sbjct: 151 GYDGV---YLYA---VQNS-YGGPEGFRKLVDEAHKKGLGVILDVVYNHVGPEGNYMVKL 203
Query: 352 GPILSFRGVDNSVYYMLAPKGEFYNYSGCGNTFNCNHPVVRQFIVDCLRYWVTEMHVDGF 411
GP S + P G +N+ + VR+FI++ + YW+ E +VDGF
Sbjct: 204 GPYFSQK--------YKTPWGLTFNFD------DAESDEVRKFILENVEYWIKEYNVDGF 249
Query: 412 RF 413
R
Sbjct: 250 RL 251
>pdb|3M07|A Chain A, 1.4 Angstrom Resolution Crystal Structure Of Putative
Alpha Amylase From Salmonella Typhimurium
Length = 618
Score = 84.0 bits (206), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 92/408 (22%), Positives = 156/408 (38%), Gaps = 107/408 (26%)
Query: 240 IIYEVHVRGFTRHESSKTEHPGTYLGVVEKLDHLKDLGINCLELMPCHEFNELEYFSYNS 299
++YE+H FT GT+ + KL +L +LG+ +E+MP +F + Y+
Sbjct: 138 VVYEMHTGTFTPE--------GTFRAAIAKLPYLAELGVTVIEVMPVAQFGGERGWGYDG 189
Query: 300 VLGDYNYSSAGIRNCGHDAINEFKLLVREAHKRGIEVVMDVVFNHTVEGNDKGPILSFRG 359
VL +S+ G + +FK + AH G+ VV+D+V NH G
Sbjct: 190 VLLYAPHSAYGTPD-------DFKAFIDAAHGYGLSVVLDIVLNHF-------------G 229
Query: 360 VDNSVYYMLAPKGEFYN---YSGCGNTFNCNHPVVRQFIVDCLRYWVTEMHVDGFRFDLA 416
+ + +LAP F++ + GN + VR++I++ YW+TE H+DG RFD
Sbjct: 230 PEGNYLPLLAPA--FFHKERMTPWGNGIAYDVDAVRRYIIEAPLYWLTEYHLDGLRFDAI 287
Query: 417 SIMTRGSSLWDSVNVYGIPIEGDLLTTGTPLRSPPLIDLISNDPILRGVKLIAEAWDTGG 476
+ S+ V + I D+ L + ++IS P
Sbjct: 288 DQIEDSSARHVLVEI-AQRIREDITDRPIHLTTEDSRNIISLHP---------------- 330
Query: 477 LYQVGIFPHWGIWSEWNGKYRDIVRQFIKG-TDGFAGAFAEC------------------ 517
Q G P + +EWN + + V F G T + FA+
Sbjct: 331 RDQDGNAPLFT--AEWNDDFHNAVHVFATGETQAYYNDFADAPEKHLARALAEGFAYQGE 388
Query: 518 ---LCGSPNLYQGGGRKPWNSINFVCAHDGFSLADLVSYNQKHNLANGEDNNDGETHNNS 574
G P + G+ P ++F+ HD Q N A G+
Sbjct: 389 ISPQTGEPRGVKSTGQPPVAFVDFIQNHD-----------QVGNRAQGDR---------- 427
Query: 575 WNCGQEGEFANILVKKLRRRQMRNFFLCLMVSQGVPMISMGDEYGHTK 622
L+ + + L++S +P++ MG+EYG ++
Sbjct: 428 ------------LITLAGAERTKVLLATLLLSPHIPLLFMGEEYGESR 463
>pdb|2Y4S|A Chain A, Barley Limit Dextrinase In Complex With Beta-Cyclodextrin
pdb|2Y5E|A Chain A, Barley Limit Dextrinase In Complex With Alpha-Cyclodextrin
pdb|4AIO|A Chain A, Crystal Structure Of The Starch Debranching Enzyme Barley
Limit Dextrinase
Length = 884
Score = 75.1 bits (183), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 96/384 (25%), Positives = 144/384 (37%), Gaps = 82/384 (21%)
Query: 93 GYPTPFGATLRDGGVNFSIFSSNAVSATLCLITLSDLQENKVTEEIALDSFANKTGDVWH 152
Y P GA + V+ +++ A ++C D E + L ++ VW
Sbjct: 124 AYTGPLGAVFSEDSVSLHLWAPTAQGVSVCFF---DGPAGPALETVQL----KESNGVWS 176
Query: 153 VFLKGDFKDMLYGYKFDGKFSPQEGHYFDPTK------IVLDPYAKAVISRAQFGVLGPD 206
V ++++ Y Y+ D + PTK + DPYA+++ + L
Sbjct: 177 VTGPREWENRYYLYEVD---------VYHPTKAQVLKCLAGDPYARSLSANGARTWLVDI 227
Query: 207 ENCWPQMACLVPTPEDEFDWEGDLPLKYPQRDLIIYEVHVRGFTRHESS-KTEHPGTYLG 265
N L P DE E P D+ IYE+H+R F+ H+ + ++ G +
Sbjct: 228 NN-----ETLKPASWDELADEK--PKLDSFSDITIYELHIRDFSAHDGTVDSDSRGGFRA 280
Query: 266 V-------VEKLDHLKDLGINCLELMPCHEFN---------------ELEYF-------- 295
+E L L D G+ + L+P F EL F
Sbjct: 281 FAYQASAGMEHLRKLSDAGLTHVHLLPSFHFAGVDDIKSNWKFVDECELATFPPGSDMQQ 340
Query: 296 --------------SYNSVLGDYNYSSAGIRNCGHDAINEFKLLVREAHKRGIEVVMDVV 341
YN VL S G I E++ +V+ ++ G+ VVMDVV
Sbjct: 341 AAVVAIQEEDPYNWGYNPVLWGVPKGSYASDPDGPSRIIEYRQMVQALNRIGLRVVMDVV 400
Query: 342 FNHTVEGNDKGPILSFRGVDNSV---YYMLAPKGEFYNYSGCGNTFNCNHPVVRQFIVDC 398
+NH + GP +D V Y G+ N + NT H +V + IVD
Sbjct: 401 YNHL---DSSGPCGISSVLDKIVPGYYVRRDTNGQIENSAAMNNT-ASEHFMVDRLIVDD 456
Query: 399 LRYWVTEMHVDGFRFDL-ASIMTR 421
L W VDGFRFDL IM R
Sbjct: 457 LLNWAVNYKVDGFRFDLMGHIMKR 480
>pdb|2BHU|A Chain A, Crystal Structure Of Deinococcus Radiodurans
Maltooligosyltrehalose Trehalohydrolase
Length = 602
Score = 71.6 bits (174), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 52/183 (28%), Positives = 79/183 (43%), Gaps = 27/183 (14%)
Query: 238 DLIIYEVHVRGFTRHESSKTEHPGTYLGVVEKLDHLKDLGINCLELMPCHEFNELEYFSY 297
D + YEVHV FT GTY EKL +LK+LG+ +++MP F+ + Y
Sbjct: 126 DCVFYEVHVGTFTPE--------GTYRAAAEKLPYLKELGVTAIQVMPLAAFDGQRGWGY 177
Query: 298 NSVLGDYNYSSAGIRNCGHDAINEFKLLVREAHKRGIEVVMDVVFNHTVEGNDKGPILSF 357
+ Y+ G + LV AH+ G+ V +DVV+NH GP ++
Sbjct: 178 DGAAFYAPYAPYG-------RPEDLMALVDAAHRLGLGVFLDVVYNHF------GPSGNY 224
Query: 358 RGVDNSVYYMLAPKGEFYNYSGCGNTFNCNHPVVRQFIVDCLRYWVTEMHVDGFRFDLAS 417
Y+ F + G G + P +R+++ R W+ + H DG R D
Sbjct: 225 LSSYAPSYF----TDRFSSAWGMG--LDYAEPHMRRYVTGNARMWLRDYHFDGLRLDATP 278
Query: 418 IMT 420
MT
Sbjct: 279 YMT 281
>pdb|2WC7|A Chain A, Crystal Structure Of Nostoc Punctiforme Debranching
Enzyme( Npde)(Acarbose Soaked)
pdb|2WCS|A Chain A, Crystal Structure Of Debranching Enzyme From Nostoc
Punctiforme (Npde)
pdb|2WKG|A Chain A, Nostoc Punctiforme Debranching Enzyme (Npde)(Native Form)
Length = 488
Score = 70.5 bits (171), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 54/178 (30%), Positives = 93/178 (52%), Gaps = 42/178 (23%)
Query: 261 GTYLGVVEKLDHLKDLGINCLELMPC------HEFNELEYFSYNSVLGDYNYSSAGIRNC 314
G G++E LD++++LGIN + P H ++ +Y+ + +LG
Sbjct: 53 GDLWGIMEDLDYIQNLGINAIYFTPIFQSASNHRYHTHDYYQVDPMLG------------ 100
Query: 315 GHDAINEFKLLVREAHKRGIEVVMDVVFNHT----------VEGNDKGPILSFRGVDNSV 364
G++A FK L+ AH+R I+VV+D VFNH+ +E P +++ ++
Sbjct: 101 GNEA---FKELLDAAHQRNIKVVLDGVFNHSSRGFFFFHDVLENGPHSPWVNWFKIEG-- 155
Query: 365 YYMLAP-KGEF-YNYSG-CGN----TFNCNHPVVRQFIVDCLRYWVTEMHVDGFRFDL 415
+ L+P GEF NY G GN FN ++P VR++I++ YW+ + +DG+R D+
Sbjct: 156 -WPLSPYNGEFPANYVGWAGNRALPEFNHDNPEVREYIMEIAEYWL-KFGIDGWRLDV 211
>pdb|1WZA|A Chain A, Crystal Structure Of Alpha-Amylase From H.Orenii
Length = 488
Score = 69.7 bits (169), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 63/205 (30%), Positives = 93/205 (45%), Gaps = 43/205 (20%)
Query: 242 YEVHVRGFTRHESSKTEHPGTYLGVVEKLDHLKD--------LGINCLELMPCHEFNELE 293
YE+ VR F S + G G++EKLD+L D LG+N + LMP F
Sbjct: 8 YEIFVRSFY---DSDGDGIGDLKGIIEKLDYLNDGDPETIADLGVNGIWLMPI--FKSPS 62
Query: 294 YFSYNSVLGDYNYSSAGIRNCGHDAINEFKLLVREAHKRGIEVVMDVVFNHTVE------ 347
Y Y+ + DY N + + +F LV AH+RGI+V++D+ NHT E
Sbjct: 63 YHGYD--VTDYYKI-----NPDYGTLEDFHKLVEAAHQRGIKVIIDLPINHTSERHPWFL 115
Query: 348 --GNDK-----------GPILSFR--GVDNSVYYMLAPKGEFYNYSGCGN-TFNCNHPVV 391
DK GP + +D + +P G +Y Y G N N+P V
Sbjct: 116 KASRDKNSEYRDYYVWAGPDTDTKETKLDGGRVWHYSPTGMYYGYFWSGMPDLNYNNPEV 175
Query: 392 RQFIVDCLRYWVTEMHVDGFRFDLA 416
++ ++ +YW+ + VDGFR D A
Sbjct: 176 QEKVIGIAKYWLKQ-GVDGFRLDGA 199
>pdb|1SMA|A Chain A, Crystal Structure Of A Maltogenic Amylase
pdb|1SMA|B Chain B, Crystal Structure Of A Maltogenic Amylase
Length = 588
Score = 67.4 bits (163), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 77/176 (43%), Gaps = 36/176 (20%)
Query: 261 GTYLGVVEKLDHLKDLGINCLELMPC------HEFNELEYFSYNSVLGDYNYSSAGIRNC 314
G G+++ LD+L DLGI + L P H+++ +YF + GD
Sbjct: 173 GDLQGIIDHLDYLADLGITGIYLTPIFRAPSNHKYDTADYFEIDPHFGDKE--------- 223
Query: 315 GHDAINEFKLLVREAHKRGIEVVMDVVFNHTVEGNDKGPILSFRGVDNSVYY-------- 366
K LV+ H++GI V++D VFNH G + P + Y
Sbjct: 224 ------TLKTLVKRCHEKGIRVMLDAVFNHC--GYEFAPFQDVLKNGAASRYKDWFHIRE 275
Query: 367 ---MLAPKGEFYNYSGCGNT--FNCNHPVVRQFIVDCLRYWVTEMHVDGFRFDLAS 417
P+ + ++ + N HP V+++++D YW+ E +DG+R D+A+
Sbjct: 276 FPLQTEPRPNYDTFAFVPHMPKLNTAHPEVKRYLLDVATYWIREFDIDGWRLDVAN 331
Score = 30.8 bits (68), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 39/85 (45%), Gaps = 9/85 (10%)
Query: 594 RQMRNFFLCLMVSQGVPMISMGDEYGHTKGGNNNTYCHDNDINYFRWDKKEESKSDFFRF 653
R+++ FL + G P I GDE G T G N+ C + WD ++++K + +
Sbjct: 437 RKVKLLFLFQLTFTGSPCIYYGDEIGMT--GGNDPECRKCMV----WDPEKQNK-ELYEH 489
Query: 654 CCLLTKFRHECESLGLSD--FPTAD 676
L R + +L D F TAD
Sbjct: 490 VKQLIALRKQYRALRRGDVAFLTAD 514
>pdb|1GVI|A Chain A, Thermus Maltogenic Amylase In Complex With Beta-Cd
pdb|1GVI|B Chain B, Thermus Maltogenic Amylase In Complex With Beta-Cd
Length = 588
Score = 67.4 bits (163), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 77/176 (43%), Gaps = 36/176 (20%)
Query: 261 GTYLGVVEKLDHLKDLGINCLELMPC------HEFNELEYFSYNSVLGDYNYSSAGIRNC 314
G G+++ LD+L DLGI + L P H+++ +YF + GD
Sbjct: 173 GDLQGIIDHLDYLADLGITGIYLTPIFRAPSNHKYDTADYFEIDPHFGDKE--------- 223
Query: 315 GHDAINEFKLLVREAHKRGIEVVMDVVFNHTVEGNDKGPILSFRGVDNSVYY-------- 366
K LV+ H++GI V++D VFNH G + P + Y
Sbjct: 224 ------TLKTLVKRCHEKGIRVMLDAVFNHC--GYEFAPFQDVLKNGAASRYKDWFHIRE 275
Query: 367 ---MLAPKGEFYNYSGCGNT--FNCNHPVVRQFIVDCLRYWVTEMHVDGFRFDLAS 417
P+ + ++ + N HP V+++++D YW+ E +DG+R D+A+
Sbjct: 276 FPLQTEPRPNYDTFAFVPHMPKLNTAHPEVKRYLLDVATYWIREFDIDGWRLDVAN 331
Score = 30.8 bits (68), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 39/85 (45%), Gaps = 9/85 (10%)
Query: 594 RQMRNFFLCLMVSQGVPMISMGDEYGHTKGGNNNTYCHDNDINYFRWDKKEESKSDFFRF 653
R+++ FL + G P I GDE G T G N+ C + WD ++++K + +
Sbjct: 437 RKVKLLFLFQLTFTGSPCIYYGDEIGMT--GGNDPECRKCMV----WDPEKQNK-ELYEH 489
Query: 654 CCLLTKFRHECESLGLSD--FPTAD 676
L R + +L D F TAD
Sbjct: 490 VKQLIALRKQYRALRRGDVAFLTAD 514
>pdb|1EA9|C Chain C, Cyclomaltodextrinase
pdb|1EA9|D Chain D, Cyclomaltodextrinase
Length = 583
Score = 66.6 bits (161), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 43/175 (24%), Positives = 78/175 (44%), Gaps = 33/175 (18%)
Query: 261 GTYLGVVEKLDHLKDLGINCLELMPC------HEFNELEYFSYNSVLGDYNYSSAGIRNC 314
G GV++ LDHL LG+N + P H+++ +YF + GD +
Sbjct: 169 GDLQGVIDHLDHLSKLGVNAVYFTPLFKATTNHKYDTEDYFQIDPQFGDKD--------- 219
Query: 315 GHDAINEFKLLVREAHKRGIEVVMDVVFNHT----------VEGNDKGPILSFRGVDNSV 364
K LV H+RGI V++D VFNH+ ++ +K + + +
Sbjct: 220 ------TLKKLVDLCHERGIRVLLDAVFNHSGRTFPPFVDVLKNGEKSKYKDWFHIRSLP 273
Query: 365 YYML--APKGEFYNYSGCGNTFNCNHPVVRQFIVDCLRYWVTEMHVDGFRFDLAS 417
++ P + + + N HP V+++++ YW+ E +DG+R D+A+
Sbjct: 274 LEVVDGIPTYDTFAFEPLMPKLNTEHPDVKEYLLKAAEYWIRETGIDGWRLDVAN 328
>pdb|1WZK|A Chain A, Thermoactinomyces Vulgaris R-47 Alpha-Amylase Ii (Tva Ii)
Mutatnt D465n
pdb|1WZK|B Chain B, Thermoactinomyces Vulgaris R-47 Alpha-Amylase Ii (Tva Ii)
Mutatnt D465n
Length = 585
Score = 66.2 bits (160), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 102/442 (23%), Positives = 161/442 (36%), Gaps = 129/442 (29%)
Query: 251 RHESSKTEHPGTYLGVVEKLDHLKDLGINCLELMPC------HEFNELEYFSYNSVLGDY 304
RH+S + G GV+++L +L++LG+ L P H+++ +Y + + GD
Sbjct: 163 RHDSF---YGGDLKGVIDRLPYLEELGVTALYFTPIFASPSHHKYDTADYLAIDPQFGD- 218
Query: 305 NYSSAGIRNCGHDAINEFKLLVREAHKRGIEVVMDVVFNHTVEGNDKGPILSFRGV---- 360
+ F+ LV EAH+RGI++++D VFNH + +FR V
Sbjct: 219 --------------LPTFRRLVDEAHRRGIKIILDAVFNHAGD-----QFFAFRDVLQKG 259
Query: 361 DNSVYY-------MLAPKGEFYNYSGCG------NTFNCNHPVVRQFIVDCLRYWVTEMH 407
+ S Y K NY +P V++++ D R+W+ E
Sbjct: 260 EQSRYKDWFFIEDFPVSKTSRTNYETFAVQVPAMPKLRTENPEVKEYLFDVARFWM-EQG 318
Query: 408 VDGFRFDLASIMTRGSSLWDSVNVYGIPIEGDLLTTGTPLRSPPLIDLISNDPILRGVKL 467
+DG+R D+A+ + + W + D L G I +D
Sbjct: 319 IDGWRLDVANEVDH--AFWREFRRLVKSLNPDALIVGE----------IWHD-------- 358
Query: 468 IAEAWDTGGLYQVGIFPHWGIWSEWNGKYRDIVRQFIKGTDGFAGAFAECLCGSPNLY-Q 526
A W G + S N +R+ V +F + A F L + LY +
Sbjct: 359 -ASGWLMGDQFD----------SVMNYLFRESVIRFFATGEIHAERFDAELTRARMLYPE 407
Query: 527 GGGRKPWNSINFVCAHDGFSLADLVSYNQKHNLANGEDNNDGETHNNSWNC-GQEGEFAN 585
+ WN + D++D E S C G E +F
Sbjct: 408 QAAQGLWNLL---------------------------DSHDTERFLTS--CGGNEAKF-- 436
Query: 586 ILVKKLRRRQMRNFFLCLMVSQGVPMISMGDEYGHTKGGNNNTYCHDNDINYFRWDKKEE 645
R L M G P+I GDE G G N C I W++KE+
Sbjct: 437 -----------RLAVLFQMTYLGTPLIYYGDEIG--MAGATNPDCRRPMI----WEEKEQ 479
Query: 646 SKSDFFRFCCLLTKFRHECESL 667
++ F F L + RH SL
Sbjct: 480 NRG-LFEFYKELIRLRHRLASL 500
>pdb|1JF5|A Chain A, Crystal Structure Of Thermoactinomyces Vulgaris R-47
Alpha- Amylase 2 Mutant F286a
pdb|1JF5|B Chain B, Crystal Structure Of Thermoactinomyces Vulgaris R-47
Alpha- Amylase 2 Mutant F286a
Length = 585
Score = 65.9 bits (159), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 101/442 (22%), Positives = 161/442 (36%), Gaps = 129/442 (29%)
Query: 251 RHESSKTEHPGTYLGVVEKLDHLKDLGINCLELMPC------HEFNELEYFSYNSVLGDY 304
RH+S + G GV+++L +L++LG+ L P H+++ +Y + + GD
Sbjct: 163 RHDSF---YGGDLKGVIDRLPYLEELGVTALYFTPIFASPSHHKYDTADYLAIDPQFGD- 218
Query: 305 NYSSAGIRNCGHDAINEFKLLVREAHKRGIEVVMDVVFNHTVEGNDKGPILSFRGV---- 360
+ F+ LV EAH+RGI++++D VFNH + +FR V
Sbjct: 219 --------------LPTFRRLVDEAHRRGIKIILDAVFNHAGD-----QFFAFRDVLQKG 259
Query: 361 DNSVYY-------MLAPKGEFYNYSGCG------NTFNCNHPVVRQFIVDCLRYWVTEMH 407
+ S Y K NY +P V++++ D R+W+ E
Sbjct: 260 EQSRYKDWFFIEDFPVSKTSRTNYETAAVQVPAMPKLRTENPEVKEYLFDVARFWM-EQG 318
Query: 408 VDGFRFDLASIMTRGSSLWDSVNVYGIPIEGDLLTTGTPLRSPPLIDLISNDPILRGVKL 467
+DG+R D+A+ + + W + D L G I +D
Sbjct: 319 IDGWRLDVANEVDH--AFWREFRRLVKSLNPDALIVGE----------IWHD-------- 358
Query: 468 IAEAWDTGGLYQVGIFPHWGIWSEWNGKYRDIVRQFIKGTDGFAGAFAECLCGSPNLY-Q 526
A W G + S N +R+ V +F + A F L + LY +
Sbjct: 359 -ASGWLMGDQFD----------SVMNYLFRESVIRFFATGEIHAERFDAELTRARMLYPE 407
Query: 527 GGGRKPWNSINFVCAHDGFSLADLVSYNQKHNLANGEDNNDGETHNNSWNC-GQEGEFAN 585
+ WN + D++D E S C G E +F
Sbjct: 408 QAAQGLWNLL---------------------------DSHDTERFLTS--CGGNEAKF-- 436
Query: 586 ILVKKLRRRQMRNFFLCLMVSQGVPMISMGDEYGHTKGGNNNTYCHDNDINYFRWDKKEE 645
R L M G P+I GDE G G + C I W++KE+
Sbjct: 437 -----------RLAVLFQMTYLGTPLIYYGDEIG--MAGATDPDCRRPMI----WEEKEQ 479
Query: 646 SKSDFFRFCCLLTKFRHECESL 667
++ F F L + RH SL
Sbjct: 480 NRG-LFEFYKELIRLRHRLASL 500
>pdb|2BHY|A Chain A, Crystal Structure Of Deinococcus Radiodurans
Maltooligosyltrehalose Trehalohydrolase In Complex With
Trehalose
pdb|2BHZ|A Chain A, Crystal Structure Of Deinococcus Radiodurans
Maltooligosyltrehalose Trehalohydrolase In Complex With
Maltose
pdb|2BXY|A Chain A, Is Radiation Damage Dependent On The Dose-Rate Used During
Macromolecular Crystallography Data Collection
pdb|2BXZ|A Chain A, Is Radiation Damage Dependent On The Dose-Rate Used During
Macromolecular Crystallography Data Collection
pdb|2BY0|A Chain A, Is Radiation Damage Dependent On The Dose-Rate Used During
Macromolecular Crystallography Data Collection
pdb|2BY1|A Chain A, Is Radiation Damage Dependent On The Dose-Rate Used During
Macromolecular Crystallography Data Collection
pdb|2BY2|A Chain A, Is Radiation Damage Dependent On The Dose-Rate Used During
Macromolecular Crystallography Data Collection
pdb|2BY3|A Chain A, Is Radiation Damage Dependent On The Dose-Rate Used During
Macromolecular Crystallography Data Collection
Length = 602
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 49/183 (26%), Positives = 77/183 (42%), Gaps = 27/183 (14%)
Query: 238 DLIIYEVHVRGFTRHESSKTEHPGTYLGVVEKLDHLKDLGINCLELMPCHEFNELEYFSY 297
D + YEVHV FT GTY EKL +LK+LG+ +++ P F+ + Y
Sbjct: 126 DCVFYEVHVGTFTPE--------GTYRAAAEKLPYLKELGVTAIQVXPLAAFDGQRGWGY 177
Query: 298 NSVLGDYNYSSAGIRNCGHDAINEFKLLVREAHKRGIEVVMDVVFNHTVEGNDKGPILSF 357
+ Y+ G + LV AH+ G+ V +DVV+NH GP ++
Sbjct: 178 DGAAFYAPYAPYG-------RPEDLXALVDAAHRLGLGVFLDVVYNHF------GPSGNY 224
Query: 358 RGVDNSVYYMLAPKGEFYNYSGCGNTFNCNHPVVRQFIVDCLRYWVTEMHVDGFRFDLAS 417
Y+ + ++ S G + P R+++ R W+ + H DG R D
Sbjct: 225 LSSYAPSYFT-----DRFS-SAWGXGLDYAEPHXRRYVTGNARXWLRDYHFDGLRLDATP 278
Query: 418 IMT 420
T
Sbjct: 279 YXT 281
>pdb|1G1Y|A Chain A, Crystal Structure Of Alpha-Amylase Ii (Tvaii) From
Thermoactinomyces Vulgaris R-47 And Beta-Cyclodextrin
Complex
pdb|1G1Y|B Chain B, Crystal Structure Of Alpha-Amylase Ii (Tvaii) From
Thermoactinomyces Vulgaris R-47 And Beta-Cyclodextrin
Complex
Length = 585
Score = 65.1 bits (157), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 101/442 (22%), Positives = 161/442 (36%), Gaps = 129/442 (29%)
Query: 251 RHESSKTEHPGTYLGVVEKLDHLKDLGINCLELMPC------HEFNELEYFSYNSVLGDY 304
RH+S + G GV+++L +L++LG+ L P H+++ +Y + + GD
Sbjct: 163 RHDSF---YGGDLKGVIDRLPYLEELGVTALYFTPIFASPSHHKYDTADYLAIDPQFGD- 218
Query: 305 NYSSAGIRNCGHDAINEFKLLVREAHKRGIEVVMDVVFNHTVEGNDKGPILSFRGV---- 360
+ F+ LV EAH+RGI++++D VFNH + +FR V
Sbjct: 219 --------------LPTFRRLVDEAHRRGIKIILDAVFNHAGD-----QFFAFRDVLQKG 259
Query: 361 DNSVYY-------MLAPKGEFYNYSGCG------NTFNCNHPVVRQFIVDCLRYWVTEMH 407
+ S Y K NY +P V++++ D R+W+ E
Sbjct: 260 EQSRYKDWFFIEDFPVSKTSRTNYETFAVQVPAMPKLRTENPEVKEYLFDVARFWM-EQG 318
Query: 408 VDGFRFDLASIMTRGSSLWDSVNVYGIPIEGDLLTTGTPLRSPPLIDLISNDPILRGVKL 467
+DG+R D+A+ + + W + D L G I +D
Sbjct: 319 IDGWRLDVANEVDH--AFWREFRRLVKSLNPDALIVGA----------IWHD-------- 358
Query: 468 IAEAWDTGGLYQVGIFPHWGIWSEWNGKYRDIVRQFIKGTDGFAGAFAECLCGSPNLY-Q 526
A W G + S N +R+ V +F + A F L + LY +
Sbjct: 359 -ASGWLMGDQFD----------SVMNYLFRESVIRFFATGEIHAERFDAELTRARMLYPE 407
Query: 527 GGGRKPWNSINFVCAHDGFSLADLVSYNQKHNLANGEDNNDGETHNNSWNC-GQEGEFAN 585
+ WN + D++D E S C G E +F
Sbjct: 408 QAAQGLWNLL---------------------------DSHDTERFLTS--CGGNEAKF-- 436
Query: 586 ILVKKLRRRQMRNFFLCLMVSQGVPMISMGDEYGHTKGGNNNTYCHDNDINYFRWDKKEE 645
R L M G P+I GDE G G + C I W++KE+
Sbjct: 437 -----------RLAVLFQMTYLGTPLIYYGDEIG--MAGATDPDCRRPMI----WEEKEQ 479
Query: 646 SKSDFFRFCCLLTKFRHECESL 667
++ F F L + RH SL
Sbjct: 480 NRG-LFEFYKELIRLRHRLASL 500
>pdb|1BVZ|A Chain A, Alpha-Amylase Ii (Tvaii) From Thermoactinomyces Vulgaris
R- 47
pdb|1BVZ|B Chain B, Alpha-Amylase Ii (Tvaii) From Thermoactinomyces Vulgaris
R- 47
pdb|1JI2|A Chain A, Improved X-Ray Structure Of Thermoactinomyces Vulgaris
R-47 Alpha-Amylase 2
pdb|1JI2|B Chain B, Improved X-Ray Structure Of Thermoactinomyces Vulgaris
R-47 Alpha-Amylase 2
pdb|3A6O|A Chain A, Crystal Structure Of Thermoactinomyces Vulgaris R-47
Alpha- Amylase 2ACARBOSE COMPLEX
pdb|3A6O|B Chain B, Crystal Structure Of Thermoactinomyces Vulgaris R-47
Alpha- Amylase 2ACARBOSE COMPLEX
Length = 585
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 101/442 (22%), Positives = 161/442 (36%), Gaps = 129/442 (29%)
Query: 251 RHESSKTEHPGTYLGVVEKLDHLKDLGINCLELMPC------HEFNELEYFSYNSVLGDY 304
RH+S + G GV+++L +L++LG+ L P H+++ +Y + + GD
Sbjct: 163 RHDSF---YGGDLKGVIDRLPYLEELGVTALYFTPIFASPSHHKYDTADYLAIDPQFGD- 218
Query: 305 NYSSAGIRNCGHDAINEFKLLVREAHKRGIEVVMDVVFNHTVEGNDKGPILSFRGV---- 360
+ F+ LV EAH+RGI++++D VFNH + +FR V
Sbjct: 219 --------------LPTFRRLVDEAHRRGIKIILDAVFNHAGD-----QFFAFRDVLQKG 259
Query: 361 DNSVYY-------MLAPKGEFYNYSGCG------NTFNCNHPVVRQFIVDCLRYWVTEMH 407
+ S Y K NY +P V++++ D R+W+ E
Sbjct: 260 EQSRYKDWFFIEDFPVSKTSRTNYETFAVQVPAMPKLRTENPEVKEYLFDVARFWM-EQG 318
Query: 408 VDGFRFDLASIMTRGSSLWDSVNVYGIPIEGDLLTTGTPLRSPPLIDLISNDPILRGVKL 467
+DG+R D+A+ + + W + D L G I +D
Sbjct: 319 IDGWRLDVANEVDH--AFWREFRRLVKSLNPDALIVGE----------IWHD-------- 358
Query: 468 IAEAWDTGGLYQVGIFPHWGIWSEWNGKYRDIVRQFIKGTDGFAGAFAECLCGSPNLY-Q 526
A W G + S N +R+ V +F + A F L + LY +
Sbjct: 359 -ASGWLMGDQFD----------SVMNYLFRESVIRFFATGEIHAERFDAELTRARMLYPE 407
Query: 527 GGGRKPWNSINFVCAHDGFSLADLVSYNQKHNLANGEDNNDGETHNNSWNC-GQEGEFAN 585
+ WN + D++D E S C G E +F
Sbjct: 408 QAAQGLWNLL---------------------------DSHDTERFLTS--CGGNEAKF-- 436
Query: 586 ILVKKLRRRQMRNFFLCLMVSQGVPMISMGDEYGHTKGGNNNTYCHDNDINYFRWDKKEE 645
R L M G P+I GDE G G + C I W++KE+
Sbjct: 437 -----------RLAVLFQMTYLGTPLIYYGDEIG--MAGATDPDCRRPMI----WEEKEQ 479
Query: 646 SKSDFFRFCCLLTKFRHECESL 667
++ F F L + RH SL
Sbjct: 480 NRG-LFEFYKELIRLRHRLASL 500
>pdb|1JF6|A Chain A, Crystal Structure Of Thermoactinomyces Vulgaris R-47
Alpha- Amylase Mutant F286y
pdb|1JF6|B Chain B, Crystal Structure Of Thermoactinomyces Vulgaris R-47
Alpha- Amylase Mutant F286y
Length = 585
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 101/442 (22%), Positives = 161/442 (36%), Gaps = 129/442 (29%)
Query: 251 RHESSKTEHPGTYLGVVEKLDHLKDLGINCLELMPC------HEFNELEYFSYNSVLGDY 304
RH+S + G GV+++L +L++LG+ L P H+++ +Y + + GD
Sbjct: 163 RHDSF---YGGDLKGVIDRLPYLEELGVTALYFTPIFASPSHHKYDTADYLAIDPQFGD- 218
Query: 305 NYSSAGIRNCGHDAINEFKLLVREAHKRGIEVVMDVVFNHTVEGNDKGPILSFRGV---- 360
+ F+ LV EAH+RGI++++D VFNH + +FR V
Sbjct: 219 --------------LPTFRRLVDEAHRRGIKIILDAVFNHAGD-----QFFAFRDVLQKG 259
Query: 361 DNSVYY-------MLAPKGEFYNYSGCG------NTFNCNHPVVRQFIVDCLRYWVTEMH 407
+ S Y K NY +P V++++ D R+W+ E
Sbjct: 260 EQSRYKDWFFIEDFPVSKTSRTNYETYAVQVPAMPKLRTENPEVKEYLFDVARFWM-EQG 318
Query: 408 VDGFRFDLASIMTRGSSLWDSVNVYGIPIEGDLLTTGTPLRSPPLIDLISNDPILRGVKL 467
+DG+R D+A+ + + W + D L G I +D
Sbjct: 319 IDGWRLDVANEVDH--AFWREFRRLVKSLNPDALIVGE----------IWHD-------- 358
Query: 468 IAEAWDTGGLYQVGIFPHWGIWSEWNGKYRDIVRQFIKGTDGFAGAFAECLCGSPNLY-Q 526
A W G + S N +R+ V +F + A F L + LY +
Sbjct: 359 -ASGWLMGDQFD----------SVMNYLFRESVIRFFATGEIHAERFDAELTRARMLYPE 407
Query: 527 GGGRKPWNSINFVCAHDGFSLADLVSYNQKHNLANGEDNNDGETHNNSWNC-GQEGEFAN 585
+ WN + D++D E S C G E +F
Sbjct: 408 QAAQGLWNLL---------------------------DSHDTERFLTS--CGGNEAKF-- 436
Query: 586 ILVKKLRRRQMRNFFLCLMVSQGVPMISMGDEYGHTKGGNNNTYCHDNDINYFRWDKKEE 645
R L M G P+I GDE G G + C I W++KE+
Sbjct: 437 -----------RLAVLFQMTYLGTPLIYYGDEIG--MAGATDPDCRRPMI----WEEKEQ 479
Query: 646 SKSDFFRFCCLLTKFRHECESL 667
++ F F L + RH SL
Sbjct: 480 NRG-LFEFYKELIRLRHRLASL 500
>pdb|4GKL|A Chain A, Crystal Structure Of A Noncanonic Maltogenic Alpha-amylase
Amyb From Thermotoga Neapolitana
pdb|4GKL|B Chain B, Crystal Structure Of A Noncanonic Maltogenic Alpha-amylase
Amyb From Thermotoga Neapolitana
Length = 422
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 55/189 (29%), Positives = 92/189 (48%), Gaps = 24/189 (12%)
Query: 237 RDLIIYEVHVRGFTRHESSKTEHPGTYLGVVEKLDHLKDLGINCLELMPCHEFN-ELEYF 295
++LIIYE R + + K +L + + L+ LK +GIN + LMP H E
Sbjct: 4 KNLIIYEAFARAYPGEKGKK------FLSLEKDLERLKGMGINTVWLMPIHPTGVEGRKG 57
Query: 296 SYNS--VLGDYNYSSAGIRNCGHDAINEFKLLVREAHKRGIEVVMDVVFNHTVEGN---D 350
+ S + DY I G +FK V+ AH+ + V+MD+V NH N
Sbjct: 58 TLGSPYAIRDYYEIDLLIGTKG-----DFKKFVKRAHELNMYVLMDMVLNHAAVDNVLVK 112
Query: 351 KGPILSFRGVDNSVYYMLAPKGEFYNYSGCGNTFNCNHPVVRQFIVDCLRYWVTEMHVDG 410
K P R + + P + ++S + F+ ++ +R+++++ +RYWV E VDG
Sbjct: 113 KHPEWFLRDENGN------PTRKVPDWSDVVD-FDYSNGELREYMINMMRYWVEEFDVDG 165
Query: 411 FRFDLASIM 419
FR D+A ++
Sbjct: 166 FRCDVAGLV 174
>pdb|1WZM|A Chain A, Thermoactinomyces Vulgaris R-47 Alpha-amylase Ii (tva Ii)
Mutatnt R469k
pdb|1WZM|B Chain B, Thermoactinomyces Vulgaris R-47 Alpha-amylase Ii (tva Ii)
Mutatnt R469k
Length = 585
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 101/442 (22%), Positives = 161/442 (36%), Gaps = 129/442 (29%)
Query: 251 RHESSKTEHPGTYLGVVEKLDHLKDLGINCLELMPC------HEFNELEYFSYNSVLGDY 304
RH+S + G GV+++L +L++LG+ L P H+++ +Y + + GD
Sbjct: 163 RHDSF---YGGDLKGVIDRLPYLEELGVTALYFTPIFASPSHHKYDTADYLAIDPQFGD- 218
Query: 305 NYSSAGIRNCGHDAINEFKLLVREAHKRGIEVVMDVVFNHTVEGNDKGPILSFRGV---- 360
+ F+ LV EAH+RGI++++D VFNH + +FR V
Sbjct: 219 --------------LPTFRRLVDEAHRRGIKIILDAVFNHAGD-----QFFAFRDVLQKG 259
Query: 361 DNSVYY-------MLAPKGEFYNYSGCG------NTFNCNHPVVRQFIVDCLRYWVTEMH 407
+ S Y K NY +P V++++ D R+W+ E
Sbjct: 260 EQSRYKDWFFIEDFPVSKTSRTNYETFAVQVPAMPKLRTENPEVKEYLFDVARFWM-EQG 318
Query: 408 VDGFRFDLASIMTRGSSLWDSVNVYGIPIEGDLLTTGTPLRSPPLIDLISNDPILRGVKL 467
+DG+R D+A+ + + W + D L G I +D
Sbjct: 319 IDGWRLDVANEVDH--AFWREFRRLVKSLNPDALIVGE----------IWHD-------- 358
Query: 468 IAEAWDTGGLYQVGIFPHWGIWSEWNGKYRDIVRQFIKGTDGFAGAFAECLCGSPNLY-Q 526
A W G + S N +R+ V +F + A F L + LY +
Sbjct: 359 -ASGWLMGDQFD----------SVMNYLFRESVIRFFATGEIHAERFDAELTRARMLYPE 407
Query: 527 GGGRKPWNSINFVCAHDGFSLADLVSYNQKHNLANGEDNNDGETHNNSWNC-GQEGEFAN 585
+ WN + D++D E S C G E +F
Sbjct: 408 QAAQGLWNLL---------------------------DSHDTERFLTS--CGGNEAKF-- 436
Query: 586 ILVKKLRRRQMRNFFLCLMVSQGVPMISMGDEYGHTKGGNNNTYCHDNDINYFRWDKKEE 645
R L M G P+I GDE G G + C I W++KE+
Sbjct: 437 -----------RLAVLFQMTYLGTPLIYYGDEIG--MAGATDPDCKRPMI----WEEKEQ 479
Query: 646 SKSDFFRFCCLLTKFRHECESL 667
++ F F L + RH SL
Sbjct: 480 NRG-LFEFYKELIRLRHRLASL 500
>pdb|3DHU|A Chain A, Crystal Structure Of An Alpha-Amylase From Lactobacillus
Plantarum
pdb|3DHU|B Chain B, Crystal Structure Of An Alpha-Amylase From Lactobacillus
Plantarum
pdb|3DHU|C Chain C, Crystal Structure Of An Alpha-Amylase From Lactobacillus
Plantarum
pdb|3DHU|D Chain D, Crystal Structure Of An Alpha-Amylase From Lactobacillus
Plantarum
Length = 449
Score = 63.5 bits (153), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 52/189 (27%), Positives = 86/189 (45%), Gaps = 28/189 (14%)
Query: 237 RDLIIYEVHVRGFTRHESSKTEHPGTYLGVVEKLDHLKDLGINCLELMPCH---EFNELE 293
R+ +IY V VR ++ G + GV L +KDLG + L L+P + E N
Sbjct: 11 RNEMIYSVFVRNYS--------EAGNFAGVTADLQRIKDLGTDILWLLPINPIGEVNRKG 62
Query: 294 YFSYNSVLGDYNYSSAGIRNCGHDAINEFKLLVREAHKRGIEVVMDVVFNHTVEGNDKGP 353
+ DY GI N + + +FK L AH+ G++V++D+V+NHT
Sbjct: 63 TLGSPYAIKDYR----GI-NPEYGTLADFKALTDRAHELGMKVMLDIVYNHTSPD----- 112
Query: 354 ILSFRGVDNSVYYMLAPKGEFYNYSGCGN---TFNCNHPVVRQFIVDCLRYWVTEMHVDG 410
S ++ ++ G+ N G + + H + Q+ +D L YW VDG
Sbjct: 113 --SVLATEHPEWFYHDADGQLTNKVGDWSDVKDLDYGHHELWQYQIDTLLYW--SQFVDG 168
Query: 411 FRFDLASIM 419
+R D+A ++
Sbjct: 169 YRCDVAPLV 177
>pdb|1WZL|A Chain A, Thermoactinomyces Vulgaris R-47 Alpha-Amylase Ii (Tva Ii)
Mutatnt R469l
pdb|1WZL|B Chain B, Thermoactinomyces Vulgaris R-47 Alpha-Amylase Ii (Tva Ii)
Mutatnt R469l
Length = 585
Score = 63.5 bits (153), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 101/442 (22%), Positives = 161/442 (36%), Gaps = 129/442 (29%)
Query: 251 RHESSKTEHPGTYLGVVEKLDHLKDLGINCLELMPC------HEFNELEYFSYNSVLGDY 304
RH+S + G GV+++L +L++LG+ L P H+++ +Y + + GD
Sbjct: 163 RHDSF---YGGDLKGVIDRLPYLEELGVTALYFTPIFASPSHHKYDTADYLAIDPQFGD- 218
Query: 305 NYSSAGIRNCGHDAINEFKLLVREAHKRGIEVVMDVVFNHTVEGNDKGPILSFRGV---- 360
+ F+ LV EAH+RGI++++D VFNH + +FR V
Sbjct: 219 --------------LPTFRRLVDEAHRRGIKIILDAVFNHAGD-----QFFAFRDVLQKG 259
Query: 361 DNSVYY-------MLAPKGEFYNYSGCG------NTFNCNHPVVRQFIVDCLRYWVTEMH 407
+ S Y K NY +P V++++ D R+W+ E
Sbjct: 260 EQSRYKDWFFIEDFPVSKTSRTNYETFAVQVPAMPKLRTENPEVKEYLFDVARFWM-EQG 318
Query: 408 VDGFRFDLASIMTRGSSLWDSVNVYGIPIEGDLLTTGTPLRSPPLIDLISNDPILRGVKL 467
+DG+R D+A+ + + W + D L G I +D
Sbjct: 319 IDGWRLDVANEVDH--AFWREFRRLVKSLNPDALIVGE----------IWHD-------- 358
Query: 468 IAEAWDTGGLYQVGIFPHWGIWSEWNGKYRDIVRQFIKGTDGFAGAFAECLCGSPNLY-Q 526
A W G + S N +R+ V +F + A F L + LY +
Sbjct: 359 -ASGWLMGDQFD----------SVMNYLFRESVIRFFATGEIHAERFDAELTRARMLYPE 407
Query: 527 GGGRKPWNSINFVCAHDGFSLADLVSYNQKHNLANGEDNNDGETHNNSWNC-GQEGEFAN 585
+ WN + D++D E S C G E +F
Sbjct: 408 QAAQGLWNLL---------------------------DSHDTERFLTS--CGGNEAKF-- 436
Query: 586 ILVKKLRRRQMRNFFLCLMVSQGVPMISMGDEYGHTKGGNNNTYCHDNDINYFRWDKKEE 645
R L M G P+I GDE G G + C I W++KE+
Sbjct: 437 -----------RLAVLFQMTYLGTPLIYYGDEIG--MAGATDPDCLRPMI----WEEKEQ 479
Query: 646 SKSDFFRFCCLLTKFRHECESL 667
++ F F L + RH SL
Sbjct: 480 NRG-LFEFYKELIRLRHRLASL 500
>pdb|1J0J|A Chain A, Crystal Structure Of Neopullulanase E357q Complex With
Maltotetraose
pdb|1J0J|B Chain B, Crystal Structure Of Neopullulanase E357q Complex With
Maltotetraose
pdb|1J0K|A Chain A, Crystal Structure Of Neopullulanase E357q Complex With
Isopanose
pdb|1J0K|B Chain B, Crystal Structure Of Neopullulanase E357q Complex With
Isopanose
Length = 588
Score = 62.8 bits (151), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 79/176 (44%), Gaps = 36/176 (20%)
Query: 261 GTYLGVVEKLDHLKDLGINCLELMPC------HEFNELEYFSYNSVLGDYNYSSAGIRNC 314
G G+++ LD+L DLGI + L P H+++ +YF + GD
Sbjct: 173 GDLQGIIDHLDYLVDLGITGIYLTPIFRSPSNHKYDTADYFEVDPHFGD----------- 221
Query: 315 GHDAINEFKLLVREAHKRGIEVVMDVVFNHTVEGNDKGPILS-FRGVDNSVY-------- 365
K L+ H++GI V++D VFNH G + P ++ ++S Y
Sbjct: 222 ----KETLKTLIDRCHEKGIRVMLDAVFNHC--GYEFAPFQDVWKNGESSKYKDWFHIHE 275
Query: 366 --YMLAPKGEFYNYSGCGNT--FNCNHPVVRQFIVDCLRYWVTEMHVDGFRFDLAS 417
P+ + ++ N +P V+++++D YW+ E +DG+R D+A+
Sbjct: 276 FPLQTEPRPNYDTFAFVPQMPKLNTANPEVKRYLLDVATYWIREFDIDGWRLDVAN 331
>pdb|1J0H|A Chain A, Crystal Structure Of Bacillus Stearothermophilus
Neopullulanase
pdb|1J0H|B Chain B, Crystal Structure Of Bacillus Stearothermophilus
Neopullulanase
pdb|1J0I|A Chain A, Crystal Structure Of Neopullulanase Complex With Panose
pdb|1J0I|B Chain B, Crystal Structure Of Neopullulanase Complex With Panose
Length = 588
Score = 62.8 bits (151), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 79/176 (44%), Gaps = 36/176 (20%)
Query: 261 GTYLGVVEKLDHLKDLGINCLELMPC------HEFNELEYFSYNSVLGDYNYSSAGIRNC 314
G G+++ LD+L DLGI + L P H+++ +YF + GD
Sbjct: 173 GDLQGIIDHLDYLVDLGITGIYLTPIFRSPSNHKYDTADYFEVDPHFGDKE--------- 223
Query: 315 GHDAINEFKLLVREAHKRGIEVVMDVVFNHTVEGNDKGPILS-FRGVDNSVY-------- 365
K L+ H++GI V++D VFNH G + P ++ ++S Y
Sbjct: 224 ------TLKTLIDRCHEKGIRVMLDAVFNHC--GYEFAPFQDVWKNGESSKYKDWFHIHE 275
Query: 366 --YMLAPKGEFYNYSGCGNT--FNCNHPVVRQFIVDCLRYWVTEMHVDGFRFDLAS 417
P+ + ++ N +P V+++++D YW+ E +DG+R D+A+
Sbjct: 276 FPLQTEPRPNYDTFAFVPQMPKLNTANPEVKRYLLDVATYWIREFDIDGWRLDVAN 331
>pdb|1JL8|A Chain A, Complex Of Alpha-Amylase Ii (Tva Ii) From
Thermoactinomyces Vulgaris R-47 With Beta-Cyclodextrin
Based On A Co- Crystallization With Methyl
Beta-Cyclodextrin
pdb|1JL8|B Chain B, Complex Of Alpha-Amylase Ii (Tva Ii) From
Thermoactinomyces Vulgaris R-47 With Beta-Cyclodextrin
Based On A Co- Crystallization With Methyl
Beta-Cyclodextrin
pdb|1JIB|A Chain A, Complex Of Alpha-Amylase Ii (Tva Ii) From
Thermoactinomyces Vulgaris R-47 With Maltotetraose Based
On A Crystal Soaked With Maltohexaose.
pdb|1JIB|B Chain B, Complex Of Alpha-Amylase Ii (Tva Ii) From
Thermoactinomyces Vulgaris R-47 With Maltotetraose Based
On A Crystal Soaked With Maltohexaose.
pdb|1VB9|A Chain A, Crystal Structure Of Thermoactinomyces Vulgaris R-47
Alpha- Amylase Ii (Tva Ii) Complexed With
Transglycosylated Product
pdb|1VB9|B Chain B, Crystal Structure Of Thermoactinomyces Vulgaris R-47
Alpha- Amylase Ii (Tva Ii) Complexed With
Transglycosylated Product
pdb|2D2O|A Chain A, Structure Of A Complex Of Thermoactinomyces Vulgaris R-47
Alpha-Amylase 2 With Maltohexaose Demonstrates The
Important Role Of Aromatic Residues At The Reducing End
Of The Substrate Binding Cleft
pdb|2D2O|B Chain B, Structure Of A Complex Of Thermoactinomyces Vulgaris R-47
Alpha-Amylase 2 With Maltohexaose Demonstrates The
Important Role Of Aromatic Residues At The Reducing End
Of The Substrate Binding Cleft
Length = 585
Score = 62.8 bits (151), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 100/442 (22%), Positives = 161/442 (36%), Gaps = 129/442 (29%)
Query: 251 RHESSKTEHPGTYLGVVEKLDHLKDLGINCLELMPC------HEFNELEYFSYNSVLGDY 304
RH+S + G GV+++L +L++LG+ L P H+++ +Y + + GD
Sbjct: 163 RHDSF---YGGDLKGVIDRLPYLEELGVTALYFTPIFASPSHHKYDTADYLAIDPQFGD- 218
Query: 305 NYSSAGIRNCGHDAINEFKLLVREAHKRGIEVVMDVVFNHTVEGNDKGPILSFRGV---- 360
+ F+ LV EAH+RGI++++D VFNH + +FR V
Sbjct: 219 --------------LPTFRRLVDEAHRRGIKIILDAVFNHAGD-----QFFAFRDVLQKG 259
Query: 361 DNSVYY-------MLAPKGEFYNYSGCG------NTFNCNHPVVRQFIVDCLRYWVTEMH 407
+ S Y K NY +P V++++ D R+W+ E
Sbjct: 260 EQSRYKDWFFIEDFPVSKTSRTNYETFAVQVPAMPKLRTENPEVKEYLFDVARFWM-EQG 318
Query: 408 VDGFRFDLASIMTRGSSLWDSVNVYGIPIEGDLLTTGTPLRSPPLIDLISNDPILRGVKL 467
+DG+R ++A+ + + W + D L G I +D
Sbjct: 319 IDGWRLNVANEVDH--AFWREFRRLVKSLNPDALIVGE----------IWHD-------- 358
Query: 468 IAEAWDTGGLYQVGIFPHWGIWSEWNGKYRDIVRQFIKGTDGFAGAFAECLCGSPNLY-Q 526
A W G + S N +R+ V +F + A F L + LY +
Sbjct: 359 -ASGWLMGDQFD----------SVMNYLFRESVIRFFATGEIHAERFDAELTRARMLYPE 407
Query: 527 GGGRKPWNSINFVCAHDGFSLADLVSYNQKHNLANGEDNNDGETHNNSWNC-GQEGEFAN 585
+ WN + D++D E S C G E +F
Sbjct: 408 QAAQGLWNLL---------------------------DSHDTERFLTS--CGGNEAKF-- 436
Query: 586 ILVKKLRRRQMRNFFLCLMVSQGVPMISMGDEYGHTKGGNNNTYCHDNDINYFRWDKKEE 645
R L M G P+I GDE G G + C I W++KE+
Sbjct: 437 -----------RLAVLFQMTYLGTPLIYYGDEIG--MAGATDPDCRRPMI----WEEKEQ 479
Query: 646 SKSDFFRFCCLLTKFRHECESL 667
++ F F L + RH SL
Sbjct: 480 NRG-LFEFYKELIRLRHRLASL 500
>pdb|1UOK|A Chain A, Crystal Structure Of B. Cereus Oligo-1,6-Glucosidase
Length = 558
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 51/221 (23%), Positives = 101/221 (45%), Gaps = 49/221 (22%)
Query: 237 RDLIIYEVHVRGFTRHESSKTEHPGTYLGVVEKLDHLKDLGINCLELMPCHEF----NEL 292
++ ++Y+++ R F S + G G++ KLD+LK+LGI+ + L P +E N
Sbjct: 7 KESVVYQIYPRSFM---DSNGDGIGDLRGIISKLDYLKELGIDVIWLSPVYESPNDDNGY 63
Query: 293 EYFSYNSVLGDYNYSSAGIRNCGHDAINEFKLLVREAHKRGIEVVMDVVFNHTVEGNDKG 352
+ Y ++ ++ + ++ L+ E H+R ++++MD+V NHT + ++
Sbjct: 64 DISDYCKIMNEFG------------TMEDWDELLHEMHERNMKLMMDLVVNHTSDEHN-W 110
Query: 353 PILSFRGVDNSV--YYMLAPKGEFYNYSGCGNTF-------------------------- 384
I S + DN YY+ P E + G F
Sbjct: 111 FIESRKSKDNKYRDYYIWRPGKEGKEPNNWGAAFSGSAWQYDEMTDEYYLHLFSKKQPDL 170
Query: 385 NCNHPVVRQFIVDCLRYWVTEMHVDGFRFDLASIMTRGSSL 425
N ++ VRQ + + +++W+ E +DGFR D+ + +++ L
Sbjct: 171 NWDNEKVRQDVYEMMKFWL-EKGIDGFRMDVINFISKEEGL 210
>pdb|1M53|A Chain A, Crystal Structure Of Isomaltulose Synthase (Pali) From
Klebsiella Sp. Lx3
Length = 570
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 54/216 (25%), Positives = 94/216 (43%), Gaps = 47/216 (21%)
Query: 237 RDLIIYEVHVRGFTRHESSKTEHPGTYLGVVEKLDHLKDLGINCLELMPCHEFNELEYFS 296
++ + Y+++ R F + + + G G++EKLD+LK LGI+ + + P
Sbjct: 21 KEAVFYQIYPRSF---KDTNDDGIGDIRGIIEKLDYLKSLGIDAIWINP----------H 67
Query: 297 YNSVLGDYNYSSAGIRNCGHD--AINEFKLLVREAHKRGIEVVMDVVFNHTV-------- 346
Y+S D Y + R + + +F LV E KR + +++DVV NHT
Sbjct: 68 YDSPNTDNGYDISNYRQIMKEYGTMEDFDSLVAEMKKRNMRLMIDVVINHTSDQHPWFIQ 127
Query: 347 ----------------EGNDKGP---ILSFRGVDNSVYYMLAPKGEFY--NYSGCGNTFN 385
+G D P SF G S + A G++Y ++ N
Sbjct: 128 SKSDKNNPYRDYYFWRDGKDNQPPNNYPSFFG--GSAWQKDAKSGQYYLHYFARQQPDLN 185
Query: 386 CNHPVVRQFIVDCLRYWVTEMHVDGFRFDLASIMTR 421
++P VR+ + LR+W+ + V G RFD + ++
Sbjct: 186 WDNPKVREDLYAMLRFWL-DKGVSGMRFDTVATYSK 220
>pdb|2Z1K|A Chain A, Crystal Structure Of Ttha1563 From Thermus Thermophilus
Hb8
pdb|2Z1K|B Chain B, Crystal Structure Of Ttha1563 From Thermus Thermophilus
Hb8
pdb|2Z1K|C Chain C, Crystal Structure Of Ttha1563 From Thermus Thermophilus
Hb8
pdb|2Z1K|D Chain D, Crystal Structure Of Ttha1563 From Thermus Thermophilus
Hb8
Length = 475
Score = 60.5 bits (145), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 48/173 (27%), Positives = 76/173 (43%), Gaps = 34/173 (19%)
Query: 261 GTYLGVVEKLDHLKDLGINCLELMPC------HEFNELEYFSYNSVLGDYNYSSAGIRNC 314
GT GV EKL +L DLG+ + L P H ++ ++YF + +LG
Sbjct: 47 GTLWGVAEKLPYLLDLGVEAIYLNPVFASTANHRYHTVDYFQVDPILG------------ 94
Query: 315 GHDAINEFKLLVREAHKRGIEVVMDVVFNHTVEG-------NDKGPILSFRGVDNSVYYM 367
G++A+ L+ AH G+ V++D VFNHT G + G +R + +
Sbjct: 95 GNEALRH---LLEVAHAHGVRVILDGVFNHTGRGFFAFQHLXENGEQSPYRDWYHVKGFP 151
Query: 368 LAPKGEFYNYSG-CGN----TFNCNHPVVRQFIVDCLRYWVTEMHVDGFRFDL 415
L NY GN P VR++++ +W+ VDG+R D+
Sbjct: 152 LKAYTAHPNYEAWWGNPELPKLKVETPAVREYLLAVAEHWI-RFGVDGWRLDV 203
>pdb|1VFM|A Chain A, Crystal Structure Of Thermoactinomyces Vulgaris R-47
Alpha- Amylase 2ALPHA-Cyclodextrin Complex
pdb|1VFM|B Chain B, Crystal Structure Of Thermoactinomyces Vulgaris R-47
Alpha- Amylase 2ALPHA-Cyclodextrin Complex
pdb|1VFO|A Chain A, Crystal Structure Of Thermoactinomyces Vulgaris R-47
Alpha- Amylase 2BETA-Cyclodextrin Complex
pdb|1VFO|B Chain B, Crystal Structure Of Thermoactinomyces Vulgaris R-47
Alpha- Amylase 2BETA-Cyclodextrin Complex
pdb|1VFU|A Chain A, Crystal Structure Of Thermoactinomyces Vulgaris R-47
Amylase 2GAMMA-Cyclodextrin Complex
pdb|1VFU|B Chain B, Crystal Structure Of Thermoactinomyces Vulgaris R-47
Amylase 2GAMMA-Cyclodextrin Complex
Length = 585
Score = 60.1 bits (144), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 48/190 (25%), Positives = 85/190 (44%), Gaps = 47/190 (24%)
Query: 251 RHESSKTEHPGTYLGVVEKLDHLKDLGINCLELMPC------HEFNELEYFSYNSVLGDY 304
RH+S + G GV+++L +L++LG+ L P H+++ +Y + + GD
Sbjct: 163 RHDSF---YGGDLKGVIDRLPYLEELGVTALYFTPIFASPSHHKYDTADYLAIDPQFGD- 218
Query: 305 NYSSAGIRNCGHDAINEFKLLVREAHKRGIEVVMDVVFNHTVEGNDKGPILSFRGV---- 360
+ F+ LV EAH+RGI++++D VFNH + +FR V
Sbjct: 219 --------------LPTFRRLVDEAHRRGIKIILDAVFNHAGD-----QFFAFRDVLQKG 259
Query: 361 DNSVYY-------MLAPKGEFYNYSGCG------NTFNCNHPVVRQFIVDCLRYWVTEMH 407
+ S Y K NY +P V++++ D R+W+ E
Sbjct: 260 EQSRYKDWFFIEDFPVSKTSRTNYETFAVQVPAMPKLRTENPEVKEYLFDVARFWM-EQG 318
Query: 408 VDGFRFDLAS 417
+DG+R ++A+
Sbjct: 319 IDGWRLNVAN 328
>pdb|3GBD|A Chain A, Crystal Structure Of The Isomaltulose Synthase Smua From
Protaminobacter Rubrum
pdb|3GBE|A Chain A, Crystal Structure Of The Isomaltulose Synthase Smua From
Protaminobacter Rubrum In Complex With The Inhibitor
Deoxynojirimycin
Length = 558
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 52/217 (23%), Positives = 95/217 (43%), Gaps = 49/217 (22%)
Query: 237 RDLIIYEVHVRGFTRHESSKTEHPGTYLGVVEKLDHLKDLGINCLELMPCHEF----NEL 292
++ + Y+V+ R F + + + G G++EKLD+LK LGI+ + + P ++ N
Sbjct: 7 KEAVFYQVYPRSF---KDTNGDGIGDINGIIEKLDYLKALGIDAIWINPHYDSPNTDNGY 63
Query: 293 EYFSYNSVLGDYNYSSAGIRNCGHDAINEFKLLVREAHKRGIEVVMDVVFNHTVEGNDKG 352
+ Y ++ +Y + +F L+ E KR + +++DVV NHT + N+
Sbjct: 64 DIRDYRKIMKEYG------------TMEDFDRLISEMKKRNMRLMIDVVINHTSDQNE-W 110
Query: 353 PILSFRGVDNSV--YYML--APKGEFYN------------------------YSGCGNTF 384
+ S DN YY A +G+ N ++
Sbjct: 111 FVKSKSSKDNPYRGYYFWKDAKEGQAPNNYPSFFGGSAWQKDEKTNQYYLHYFAKQQPDL 170
Query: 385 NCNHPVVRQFIVDCLRYWVTEMHVDGFRFDLASIMTR 421
N ++P VRQ + LR+W+ + V G RFD + ++
Sbjct: 171 NWDNPKVRQDLYAMLRFWL-DKGVSGLRFDTVATYSK 206
>pdb|4AEF|A Chain A, The Crystal Structure Of Thermostable Amylase From The
Pyrococcus
pdb|4AEF|B Chain B, The Crystal Structure Of Thermostable Amylase From The
Pyrococcus
Length = 645
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 56/188 (29%), Positives = 86/188 (45%), Gaps = 42/188 (22%)
Query: 261 GTYLGVVEKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYNYSSAGIRNCGHDAIN 320
G +G+ EK+DHL +LGIN + L P F+ L Y Y+ V DY + + R G D
Sbjct: 236 GDLIGIKEKIDHLVNLGINAIYLTPI--FSSLTYHGYDIV--DYFHVA---RRLGGD--R 286
Query: 321 EFKLLVREAHKRGIEVVMDVVFNHTV-----------EGNDKG-----PILSFRGVDNSV 364
F L+ E + I+V++D VF+HT +G + I+ F V
Sbjct: 287 AFVDLLSELKRFDIKVILDGVFHHTSFFHPYFQDVVRKGENSSFKNFYRIIKFPVVSKEF 346
Query: 365 YYMLAPKGEF-----------YNYSGCGNTF-----NCNHPVVRQFIVDCLRYWVTEMHV 408
+L K + +NY + + N ++P VR+FI + + +W T V
Sbjct: 347 LQILHSKSSWEEKYKKIKSLGWNYESFFSVWIMPRLNHDNPKVREFIKNVILFW-TNKGV 405
Query: 409 DGFRFDLA 416
DGFR D+A
Sbjct: 406 DGFRMDVA 413
>pdb|2FGZ|A Chain A, Crystal Structure Analysis Of Apo Pullulanase From
Klebsiella Pneumoniae
Length = 926
Score = 57.0 bits (136), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 86/355 (24%), Positives = 125/355 (35%), Gaps = 79/355 (22%)
Query: 315 GHDAINEFKLLVREAHKR-GIEVVMDVVFNHTVEGNDKGPILSFRGVDNSV---YYMLAP 370
G I EF+ +++ + G+ V+MDVV+NHT N GP +D V Y L
Sbjct: 420 GTARIKEFRTMIQAIKQDLGMNVIMDVVYNHT---NAAGPTDRTSVLDKIVPWYYQRLNE 476
Query: 371 KGEFYNYSGCGNTFNCNHPVVRQFIVDCLRYWVTEMHVDGFRFDL------ASIMT---R 421
+ C + H + + I D L W T+ +DGFRFDL A I++ R
Sbjct: 477 TTGSVESATCCSDSAPEHRMFAKLIADSLAVWTTDYKIDGFRFDLMLYHPKAQILSAWER 536
Query: 422 GSSL----------WDS--VNVYGIPIEGDLLTTGTPLRSPPLIDLI-SNDPILRGVKLI 468
+L WDS + + I + +L TG S L D + P G L
Sbjct: 537 IKALNPDIYFFGEGWDSNQSDRFEIASQINLKGTGIGTFSDRLRDAVRGGGPFDSGDALR 596
Query: 469 AEAWDTGGLYQVGIFPHWGIWSEWNGKYRDIVRQFIKGTD-GFAGAFAECLC-------- 519
G G+ P+ E D R T G AG A+ +
Sbjct: 597 QNQGVGSG---AGVLPN-----ELTTLSDDQARHLADLTRLGMAGNLADFVLIDKDGAVK 648
Query: 520 -GSPNLYQGG----GRKPWNSINFVCAHDGFSLADLVSYNQKHNLANGEDNNDGETHNNS 574
GS Y G P +N+V HD +L D++SY
Sbjct: 649 RGSEIDYNGAPGGYAADPTEVVNYVSKHDNQTLWDMISY--------------------- 687
Query: 575 WNCGQEGEFANILVKKLRRRQMRNFFLCLMVSQGVPMISMGDEYGHTKGGNNNTY 629
QE + R R +M+ QG+ G E +K ++Y
Sbjct: 688 -KAAQEADL------DTRVRMQAVSLATVMLGQGIAFDQQGSELLRSKSFTRDSY 735
Score = 38.1 bits (87), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 47/215 (21%), Positives = 88/215 (40%), Gaps = 38/215 (17%)
Query: 98 FGATLRDGGVNFSIFSSNAVSATLCLITLSD--LQENKVTEEIALDSFANKTGDVWHVFL 155
+GA L D GV F +++ A L + + + + +T + A +++ + G
Sbjct: 140 YGAQLTDSGVTFRVWAPTAQQVELVIYSADKKVIASHPMTRDSASGAWSWQGG------- 192
Query: 156 KGDFKDMLYGYKFDGKFSPQEGHYFDPTKIVLDPYAKAVISRAQFGVLGPDENCWPQMAC 215
D K Y Y + PQ V DPYA ++ + +++ Q+
Sbjct: 193 -SDLKGAFYRYAMT-VYHPQSRKV--EQYEVTDPYAHSLSTNSEYS----------QVVD 238
Query: 216 LVPTPEDEFDWEGDLPLKYPQR------DLIIYEVHVRGFTR-HESSKTEHPGTYLGVVE 268
L + W+G L + + Q+ + I+E H+R + ++ E G YL +
Sbjct: 239 LNDSALKPEGWDG-LTMPHAQKTKADLAKMTIHESHIRDLSAWDQTVPAELRGKYLALTA 297
Query: 269 K----LDHLKDL---GINCLELMPCHEFNELEYFS 296
+ + HLK L G+ +EL+P + + FS
Sbjct: 298 QESNMVQHLKQLSASGVTHIELLPVFDLATVNEFS 332
>pdb|2FH8|A Chain A, Crystal Structure Analysis Of Klebsiella Pneumoniae
Pullulanase Complexed With Isomaltose
Length = 922
Score = 57.0 bits (136), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 86/355 (24%), Positives = 125/355 (35%), Gaps = 79/355 (22%)
Query: 315 GHDAINEFKLLVREAHKR-GIEVVMDVVFNHTVEGNDKGPILSFRGVDNSV---YYMLAP 370
G I EF+ +++ + G+ V+MDVV+NHT N GP +D V Y L
Sbjct: 416 GTARIKEFRTMIQAIKQDLGMNVIMDVVYNHT---NAAGPTDRTSVLDKIVPWYYQRLNE 472
Query: 371 KGEFYNYSGCGNTFNCNHPVVRQFIVDCLRYWVTEMHVDGFRFDL------ASIMT---R 421
+ C + H + + I D L W T+ +DGFRFDL A I++ R
Sbjct: 473 TTGSVESATCCSDSAPEHRMFAKLIADSLAVWTTDYKIDGFRFDLMLYHPKAQILSAWER 532
Query: 422 GSSL----------WDS--VNVYGIPIEGDLLTTGTPLRSPPLIDLI-SNDPILRGVKLI 468
+L WDS + + I + +L TG S L D + P G L
Sbjct: 533 IKALNPDIYFFGEGWDSNQSDRFEIASQINLKGTGIGTFSDRLRDAVRGGGPFDSGDALR 592
Query: 469 AEAWDTGGLYQVGIFPHWGIWSEWNGKYRDIVRQFIKGTD-GFAGAFAECLC-------- 519
G G+ P+ E D R T G AG A+ +
Sbjct: 593 QNQGVGSG---AGVLPN-----ELTTLSDDQARHLADLTRLGMAGNLADFVLIDKDGAVK 644
Query: 520 -GSPNLYQGG----GRKPWNSINFVCAHDGFSLADLVSYNQKHNLANGEDNNDGETHNNS 574
GS Y G P +N+V HD +L D++SY
Sbjct: 645 RGSEIDYNGAPGGYAADPTEVVNYVSKHDNQTLWDMISY--------------------- 683
Query: 575 WNCGQEGEFANILVKKLRRRQMRNFFLCLMVSQGVPMISMGDEYGHTKGGNNNTY 629
QE + R R +M+ QG+ G E +K ++Y
Sbjct: 684 -KAAQEADL------DTRVRMQAVSLATVMLGQGIAFDQQGSELLRSKSFTRDSY 731
Score = 38.1 bits (87), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 47/215 (21%), Positives = 88/215 (40%), Gaps = 38/215 (17%)
Query: 98 FGATLRDGGVNFSIFSSNAVSATLCLITLSD--LQENKVTEEIALDSFANKTGDVWHVFL 155
+GA L D GV F +++ A L + + + + +T + A +++ + G
Sbjct: 136 YGAQLTDSGVTFRVWAPTAQQVELVIYSADKKVIASHPMTRDSASGAWSWQGG------- 188
Query: 156 KGDFKDMLYGYKFDGKFSPQEGHYFDPTKIVLDPYAKAVISRAQFGVLGPDENCWPQMAC 215
D K Y Y + PQ V DPYA ++ + +++ Q+
Sbjct: 189 -SDLKGAFYRYAMT-VYHPQSRKV--EQYEVTDPYAHSLSTNSEYS----------QVVD 234
Query: 216 LVPTPEDEFDWEGDLPLKYPQR------DLIIYEVHVRGFTR-HESSKTEHPGTYLGVVE 268
L + W+G L + + Q+ + I+E H+R + ++ E G YL +
Sbjct: 235 LNDSALKPEGWDG-LTMPHAQKTKADLAKMTIHESHIRDLSAWDQTVPAELRGKYLALTA 293
Query: 269 K----LDHLKDL---GINCLELMPCHEFNELEYFS 296
+ + HLK L G+ +EL+P + + FS
Sbjct: 294 QESNMVQHLKQLSASGVTHIELLPVFDLATVNEFS 328
>pdb|2FH6|A Chain A, Crystal Structure Analysis Of Klebsiella Pneumoniae
Pullulanase Complexed With Glucose
Length = 920
Score = 57.0 bits (136), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 86/355 (24%), Positives = 125/355 (35%), Gaps = 79/355 (22%)
Query: 315 GHDAINEFKLLVREAHKR-GIEVVMDVVFNHTVEGNDKGPILSFRGVDNSV---YYMLAP 370
G I EF+ +++ + G+ V+MDVV+NHT N GP +D V Y L
Sbjct: 414 GTARIKEFRTMIQAIKQDLGMNVIMDVVYNHT---NAAGPTDRTSVLDKIVPWYYQRLNE 470
Query: 371 KGEFYNYSGCGNTFNCNHPVVRQFIVDCLRYWVTEMHVDGFRFDL------ASIMT---R 421
+ C + H + + I D L W T+ +DGFRFDL A I++ R
Sbjct: 471 TTGSVESATCCSDSAPEHRMFAKLIADSLAVWTTDYKIDGFRFDLMLYHPKAQILSAWER 530
Query: 422 GSSL----------WDS--VNVYGIPIEGDLLTTGTPLRSPPLIDLI-SNDPILRGVKLI 468
+L WDS + + I + +L TG S L D + P G L
Sbjct: 531 IKALNPDIYFFGEGWDSNQSDRFEIASQINLKGTGIGTFSDRLRDAVRGGGPFDSGDALR 590
Query: 469 AEAWDTGGLYQVGIFPHWGIWSEWNGKYRDIVRQFIKGTD-GFAGAFAECLC-------- 519
G G+ P+ E D R T G AG A+ +
Sbjct: 591 QNQGVGSG---AGVLPN-----ELTTLSDDQARHLADLTRLGMAGNLADFVLIDKDGAVK 642
Query: 520 -GSPNLYQGG----GRKPWNSINFVCAHDGFSLADLVSYNQKHNLANGEDNNDGETHNNS 574
GS Y G P +N+V HD +L D++SY
Sbjct: 643 RGSEIDYNGAPGGYAADPTEVVNYVSKHDNQTLWDMISY--------------------- 681
Query: 575 WNCGQEGEFANILVKKLRRRQMRNFFLCLMVSQGVPMISMGDEYGHTKGGNNNTY 629
QE + R R +M+ QG+ G E +K ++Y
Sbjct: 682 -KAAQEADL------DTRVRMQAVSLATVMLGQGIAFDQQGSELLRSKSFTRDSY 729
Score = 38.1 bits (87), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 47/215 (21%), Positives = 88/215 (40%), Gaps = 38/215 (17%)
Query: 98 FGATLRDGGVNFSIFSSNAVSATLCLITLSD--LQENKVTEEIALDSFANKTGDVWHVFL 155
+GA L D GV F +++ A L + + + + +T + A +++ + G
Sbjct: 134 YGAQLTDSGVTFRVWAPTAQQVELVIYSADKKVIASHPMTRDSASGAWSWQGG------- 186
Query: 156 KGDFKDMLYGYKFDGKFSPQEGHYFDPTKIVLDPYAKAVISRAQFGVLGPDENCWPQMAC 215
D K Y Y + PQ V DPYA ++ + +++ Q+
Sbjct: 187 -SDLKGAFYRYAMT-VYHPQSRKV--EQYEVTDPYAHSLSTNSEYS----------QVVD 232
Query: 216 LVPTPEDEFDWEGDLPLKYPQR------DLIIYEVHVRGFTR-HESSKTEHPGTYLGVVE 268
L + W+G L + + Q+ + I+E H+R + ++ E G YL +
Sbjct: 233 LNDSALKPEGWDG-LTMPHAQKTKADLAKMTIHESHIRDLSAWDQTVPAELRGKYLALTA 291
Query: 269 K----LDHLKDL---GINCLELMPCHEFNELEYFS 296
+ + HLK L G+ +EL+P + + FS
Sbjct: 292 QESNMVQHLKQLSASGVTHIELLPVFDLATVNEFS 326
>pdb|2FHB|A Chain A, Crystal Structure Analysis Of Klebsiella Pneumoniae
Pullulanase Complexed With Maltose
pdb|2FHC|A Chain A, Crystal Structure Analysis Of Klebsiella Pneumoniae
Pullulanase Complexed With Maltotriose
pdb|2FHF|A Chain A, Crystal Structure Analysis Of Klebsiella Pneumoniae
Pullulanase Complexed With Maltotetraose
Length = 1083
Score = 57.0 bits (136), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 86/355 (24%), Positives = 125/355 (35%), Gaps = 79/355 (22%)
Query: 315 GHDAINEFKLLVREAHKR-GIEVVMDVVFNHTVEGNDKGPILSFRGVDNSV---YYMLAP 370
G I EF+ +++ + G+ V+MDVV+NHT N GP +D V Y L
Sbjct: 577 GTARIKEFRTMIQAIKQDLGMNVIMDVVYNHT---NAAGPTDRTSVLDKIVPWYYQRLNE 633
Query: 371 KGEFYNYSGCGNTFNCNHPVVRQFIVDCLRYWVTEMHVDGFRFDL------ASIMT---R 421
+ C + H + + I D L W T+ +DGFRFDL A I++ R
Sbjct: 634 TTGSVESATCCSDSAPEHRMFAKLIADSLAVWTTDYKIDGFRFDLMLYHPKAQILSAWER 693
Query: 422 GSSL----------WDS--VNVYGIPIEGDLLTTGTPLRSPPLIDLI-SNDPILRGVKLI 468
+L WDS + + I + +L TG S L D + P G L
Sbjct: 694 IKALNPDIYFFGEGWDSNQSDRFEIASQINLKGTGIGTFSDRLRDAVRGGGPFDSGDALR 753
Query: 469 AEAWDTGGLYQVGIFPHWGIWSEWNGKYRDIVRQFIKGTD-GFAGAFAECLC-------- 519
G G+ P+ E D R T G AG A+ +
Sbjct: 754 QNQGVGSG---AGVLPN-----ELTTLSDDQARHLADLTRLGMAGNLADFVLIDKDGAVK 805
Query: 520 -GSPNLYQGG----GRKPWNSINFVCAHDGFSLADLVSYNQKHNLANGEDNNDGETHNNS 574
GS Y G P +N+V HD +L D++SY
Sbjct: 806 RGSEIDYNGAPGGYAADPTEVVNYVSKHDNQTLWDMISY--------------------- 844
Query: 575 WNCGQEGEFANILVKKLRRRQMRNFFLCLMVSQGVPMISMGDEYGHTKGGNNNTY 629
QE + R R +M+ QG+ G E +K ++Y
Sbjct: 845 -KAAQEADL------DTRVRMQAVSLATVMLGQGIAFDQQGSELLRSKSFTRDSY 892
Score = 38.5 bits (88), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 47/215 (21%), Positives = 88/215 (40%), Gaps = 38/215 (17%)
Query: 98 FGATLRDGGVNFSIFSSNAVSATLCLITLSD--LQENKVTEEIALDSFANKTGDVWHVFL 155
+GA L D GV F +++ A L + + + + +T + A +++ + G
Sbjct: 297 YGAQLTDSGVTFRVWAPTAQQVELVIYSADKKVIASHPMTRDSASGAWSWQGG------- 349
Query: 156 KGDFKDMLYGYKFDGKFSPQEGHYFDPTKIVLDPYAKAVISRAQFGVLGPDENCWPQMAC 215
D K Y Y + PQ V DPYA ++ + +++ Q+
Sbjct: 350 -SDLKGAFYRYAM-TVYHPQSRKV--EQYEVTDPYAHSLSTNSEYS----------QVVD 395
Query: 216 LVPTPEDEFDWEGDLPLKYPQR------DLIIYEVHVRGFTR-HESSKTEHPGTYLGVVE 268
L + W+G L + + Q+ + I+E H+R + ++ E G YL +
Sbjct: 396 LNDSALKPEGWDG-LTMPHAQKTKADLAKMTIHESHIRDLSAWDQTVPAELRGKYLALTA 454
Query: 269 K----LDHLKDL---GINCLELMPCHEFNELEYFS 296
+ + HLK L G+ +EL+P + + FS
Sbjct: 455 QESNMVQHLKQLSASGVTHIELLPVFDLATVNEFS 489
>pdb|3K1D|A Chain A, Crystal Structure Of Glycogen Branching Enzyme Synonym:
1,4- Glucan:1,4-Alpha-D-Glucan 6-Glucosyl-Transferase
From Mycob Tuberculosis H37rv
Length = 722
Score = 55.8 bits (133), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 92/358 (25%), Positives = 147/358 (41%), Gaps = 63/358 (17%)
Query: 73 AELETAVIKKPQSQR-FQVSKGYPTPFGATLRDG---GVNFSIFSSNAVSATLCLITLSD 128
E++ + + + +R ++V +P F T DG GV+F++++ NA +L
Sbjct: 102 GEVDLHLFAEGRHERLWEVLGAHPRSF--TTADGVVSGVSFAVWAPNAKGVSLIG----- 154
Query: 129 LQENKVTEEIALDSFANKTGDVWHVFLKGDFKDMLYGYKFDGKFSPQEGHYFDPTKIVLD 188
+ N A +G VW +F D LY ++ G +G D D
Sbjct: 155 -EFNGWNGHEAPMRVLGPSG-VWELFWPDFPCDGLYKFRVHGA----DGVVTDRA----D 204
Query: 189 PYAKAVISRAQFGVLGPDENCWPQMACLVPTPEDEF---DWEGDLPLKYPQRDLI-IYEV 244
P+A FG P PQ A V + + + DW L+ P + + YEV
Sbjct: 205 PFA--------FGTEVP-----PQTASRVTSSDYTWGDDDWMAGRALRNPVNEAMSTYEV 251
Query: 245 HVRGFTRHESSKTEHPG-TYLGVVEKL-DHLKDLGINCLELMPCHEFNELEYFSYNSVLG 302
H+ + PG +Y + +L D++ D G +EL+P E + Y
Sbjct: 252 HLGSW---------RPGLSYRQLARELTDYIVDQGFTHVELLPVAEHPFAGSWGYQVT-- 300
Query: 303 DYNYSSAGIRNCGHDAINEFKLLVREAHKRGIEVVMDVVFNHTVEGNDKGPILSFRGVDN 362
+Y + R D +F+ LV H+ GI V++D V H + D + F G
Sbjct: 301 --SYYAPTSRFGTPD---DFRALVDALHQAGIGVIVDWVPAHFPK--DAWALGRFDG--T 351
Query: 363 SVYYMLAPK-GEFYNYSGCGNTFNCNHPVVRQFIVDCLRYWVTEMHVDGFRFDLASIM 419
+Y PK GE ++ F+ P VR F+V YW+ E H+DG R D + M
Sbjct: 352 PLYEHSDPKRGEQLDWGTY--VFDFGRPEVRNFLVANALYWLQEFHIDGLRVDAVASM 407
>pdb|4GI6|A Chain A, Crystal Structure Of The Mutb F164l Mutant In Complex With
Glucose
pdb|4GI6|B Chain B, Crystal Structure Of The Mutb F164l Mutant In Complex With
Glucose
pdb|4GI8|A Chain A, Crystal Structure Of The Mutb F164l Mutant From Crystals
Soaked With The Substrate Sucrose
pdb|4GI8|B Chain B, Crystal Structure Of The Mutb F164l Mutant From Crystals
Soaked With The Substrate Sucrose
pdb|4GI9|A Chain A, Crystal Structure Of The Mutb F164l Mutant From Crystals
Soaked With Trehalulose
pdb|4GI9|B Chain B, Crystal Structure Of The Mutb F164l Mutant From Crystals
Soaked With Trehalulose
pdb|4GIA|A Chain A, Crystal Structure Of The Mutb F164l Mutant From Crystals
Soaked With Isomaltulose
pdb|4GIA|B Chain B, Crystal Structure Of The Mutb F164l Mutant From Crystals
Soaked With Isomaltulose
Length = 557
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 51/218 (23%), Positives = 93/218 (42%), Gaps = 51/218 (23%)
Query: 237 RDLIIYEVHVRGFTRHESSKTEHPGTYLGVVEKLDHLKDLGINCLELMPCHEF----NEL 292
+ + Y+V+ R F + + + G + G+ EKLD+LK LGI+ + + P + N
Sbjct: 8 KSAVFYQVYPRSF---KDTNGDGIGDFKGLTEKLDYLKGLGIDAIWINPHYASPNTDNGY 64
Query: 293 EYFSYNSVLGDYNYSSAGIRNCGHDAINEFKLLVREAHKRGIEVVMDVVFNHTV------ 346
+ Y V+ +Y + +F L+ E KRG+ +++DVV NH+
Sbjct: 65 DISDYREVMKEYG------------TMEDFDRLMAELKKRGMRLMVDVVINHSSDQHEWF 112
Query: 347 ---------------------EGNDKGPILSFRGVDNSVYYMLAPKGEFY-NYSGCGN-T 383
+G++ SF G S + G++Y +Y G
Sbjct: 113 KSSRASKDNPYRDYYFWRDGKDGHEPNNYPSFFG--GSAWEKDPVTGQYYLHYLGRQQPD 170
Query: 384 FNCNHPVVRQFIVDCLRYWVTEMHVDGFRFDLASIMTR 421
N + P +R+ + LR+W+ + V G RFD + ++
Sbjct: 171 LNWDTPKLREELYAMLRFWL-DKGVSGMRFDTVATYSK 207
>pdb|2PWG|A Chain A, Crystal Structure Of The Trehalulose Synthase Mutb From
Pseudomonas Mesoacidophila Mx-45 Complexed To The
Inhibitor Castanospermine
pdb|2PWG|B Chain B, Crystal Structure Of The Trehalulose Synthase Mutb From
Pseudomonas Mesoacidophila Mx-45 Complexed To The
Inhibitor Castanospermine
pdb|2PWH|A Chain A, Crystal Structure Of The Trehalulose Synthase Mutb From
Pseudomonas Mesoacidophila Mx-45
pdb|2PWH|B Chain B, Crystal Structure Of The Trehalulose Synthase Mutb From
Pseudomonas Mesoacidophila Mx-45
Length = 556
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 51/218 (23%), Positives = 93/218 (42%), Gaps = 51/218 (23%)
Query: 237 RDLIIYEVHVRGFTRHESSKTEHPGTYLGVVEKLDHLKDLGINCLELMPCHEF----NEL 292
+ + Y+V+ R F + + + G + G+ EKLD+LK LGI+ + + P + N
Sbjct: 7 KSAVFYQVYPRSF---KDTNGDGIGDFKGLTEKLDYLKGLGIDAIWINPHYASPNTDNGY 63
Query: 293 EYFSYNSVLGDYNYSSAGIRNCGHDAINEFKLLVREAHKRGIEVVMDVVFNHTV------ 346
+ Y V+ +Y + +F L+ E KRG+ +++DVV NH+
Sbjct: 64 DISDYREVMKEYG------------TMEDFDRLMAELKKRGMRLMVDVVINHSSDQHEWF 111
Query: 347 ---------------------EGNDKGPILSFRGVDNSVYYMLAPKGEFY-NYSGCGN-T 383
+G++ SF G S + G++Y +Y G
Sbjct: 112 KSSRASKDNPYRDYYFWRDGKDGHEPNNYPSFFG--GSAWEKDPVTGQYYLHYFGRQQPD 169
Query: 384 FNCNHPVVRQFIVDCLRYWVTEMHVDGFRFDLASIMTR 421
N + P +R+ + LR+W+ + V G RFD + ++
Sbjct: 170 LNWDTPKLREELYAMLRFWL-DKGVSGMRFDTVATYSK 206
>pdb|2PWE|A Chain A, Crystal Structure Of The Mutb E254q Mutant In Complex With
The Substrate Sucrose
pdb|2PWE|B Chain B, Crystal Structure Of The Mutb E254q Mutant In Complex With
The Substrate Sucrose
Length = 556
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 51/218 (23%), Positives = 93/218 (42%), Gaps = 51/218 (23%)
Query: 237 RDLIIYEVHVRGFTRHESSKTEHPGTYLGVVEKLDHLKDLGINCLELMPCHEF----NEL 292
+ + Y+V+ R F + + + G + G+ EKLD+LK LGI+ + + P + N
Sbjct: 7 KSAVFYQVYPRSF---KDTNGDGIGDFKGLTEKLDYLKGLGIDAIWINPHYASPNTDNGY 63
Query: 293 EYFSYNSVLGDYNYSSAGIRNCGHDAINEFKLLVREAHKRGIEVVMDVVFNHTV------ 346
+ Y V+ +Y + +F L+ E KRG+ +++DVV NH+
Sbjct: 64 DISDYREVMKEYG------------TMEDFDRLMAELKKRGMRLMVDVVINHSSDQHEWF 111
Query: 347 ---------------------EGNDKGPILSFRGVDNSVYYMLAPKGEFY-NYSGCGN-T 383
+G++ SF G S + G++Y +Y G
Sbjct: 112 KSSRASKDNPYRDYYFWRDGKDGHEPNNYPSFFG--GSAWEKDPVTGQYYLHYFGRQQPD 169
Query: 384 FNCNHPVVRQFIVDCLRYWVTEMHVDGFRFDLASIMTR 421
N + P +R+ + LR+W+ + V G RFD + ++
Sbjct: 170 LNWDTPKLREELYAMLRFWL-DKGVSGMRFDTVATYSK 206
>pdb|4H2C|A Chain A, Trehalulose Synthase Mutb R284c Mutant
Length = 557
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 51/218 (23%), Positives = 93/218 (42%), Gaps = 51/218 (23%)
Query: 237 RDLIIYEVHVRGFTRHESSKTEHPGTYLGVVEKLDHLKDLGINCLELMPCHEF----NEL 292
+ + Y+V+ R F + + + G + G+ EKLD+LK LGI+ + + P + N
Sbjct: 8 KSAVFYQVYPRSF---KDTNGDGIGDFKGLTEKLDYLKGLGIDAIWINPHYASPNTDNGY 64
Query: 293 EYFSYNSVLGDYNYSSAGIRNCGHDAINEFKLLVREAHKRGIEVVMDVVFNHTV------ 346
+ Y V+ +Y + +F L+ E KRG+ +++DVV NH+
Sbjct: 65 DISDYREVMKEYG------------TMEDFDRLMAELKKRGMRLMVDVVINHSSDQHEWF 112
Query: 347 ---------------------EGNDKGPILSFRGVDNSVYYMLAPKGEFY-NYSGCGN-T 383
+G++ SF G S + G++Y +Y G
Sbjct: 113 KSSRASKDNPYRDYYFWRDGKDGHEPNNYPSFFG--GSAWEKDPVTGQYYLHYFGRQQPD 170
Query: 384 FNCNHPVVRQFIVDCLRYWVTEMHVDGFRFDLASIMTR 421
N + P +R+ + LR+W+ + V G RFD + ++
Sbjct: 171 LNWDTPKLREELYAMLRFWL-DKGVSGMRFDTVATYSK 207
>pdb|1ZJA|A Chain A, Crystal Structure Of The Trehalulose Synthase Mutb From
Pseudomonas Mesoacidophila Mx-45 (Triclinic Form)
pdb|1ZJA|B Chain B, Crystal Structure Of The Trehalulose Synthase Mutb From
Pseudomonas Mesoacidophila Mx-45 (Triclinic Form)
pdb|1ZJB|A Chain A, Crystal Structure Of The Trehalulose Synthase Mutb From
Pseudomonas Mesoacidophila Mx-45 (Monoclinic Form)
pdb|1ZJB|B Chain B, Crystal Structure Of The Trehalulose Synthase Mutb From
Pseudomonas Mesoacidophila Mx-45 (Monoclinic Form)
pdb|2PWD|A Chain A, Crystal Structure Of The Trehalulose Synthase Mutb From
Pseudomonas Mesoacidophila Mx-45 Complexed To The
Inhibitor Deoxynojirmycin
pdb|2PWD|B Chain B, Crystal Structure Of The Trehalulose Synthase Mutb From
Pseudomonas Mesoacidophila Mx-45 Complexed To The
Inhibitor Deoxynojirmycin
Length = 557
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 51/218 (23%), Positives = 93/218 (42%), Gaps = 51/218 (23%)
Query: 237 RDLIIYEVHVRGFTRHESSKTEHPGTYLGVVEKLDHLKDLGINCLELMPCHEF----NEL 292
+ + Y+V+ R F + + + G + G+ EKLD+LK LGI+ + + P + N
Sbjct: 8 KSAVFYQVYPRSF---KDTNGDGIGDFKGLTEKLDYLKGLGIDAIWINPHYASPNTDNGY 64
Query: 293 EYFSYNSVLGDYNYSSAGIRNCGHDAINEFKLLVREAHKRGIEVVMDVVFNHTV------ 346
+ Y V+ +Y + +F L+ E KRG+ +++DVV NH+
Sbjct: 65 DISDYREVMKEYG------------TMEDFDRLMAELKKRGMRLMVDVVINHSSDQHEWF 112
Query: 347 ---------------------EGNDKGPILSFRGVDNSVYYMLAPKGEFY-NYSGCGN-T 383
+G++ SF G S + G++Y +Y G
Sbjct: 113 KSSRASKDNPYRDYYFWRDGKDGHEPNNYPSFFG--GSAWEKDPVTGQYYLHYFGRQQPD 170
Query: 384 FNCNHPVVRQFIVDCLRYWVTEMHVDGFRFDLASIMTR 421
N + P +R+ + LR+W+ + V G RFD + ++
Sbjct: 171 LNWDTPKLREELYAMLRFWL-DKGVSGMRFDTVATYSK 207
>pdb|2ZE0|A Chain A, Alpha-glucosidase Gsj
Length = 555
Score = 53.5 bits (127), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 51/229 (22%), Positives = 100/229 (43%), Gaps = 53/229 (23%)
Query: 240 IIYEVHVRGFTRHESSKTEHPGTYLGVVEKLDHLKDLGINCLELMPCHEF----NELEYF 295
+ Y+++ R F + + G G++EKLD+L +LG++ + + P + N +
Sbjct: 10 VAYQIYPRSFM---DANGDGIGDLRGIIEKLDYLVELGVDIVWICPIYRSPNADNGYDIS 66
Query: 296 SYNSVLGDYNYSSAGIRNCGHDAINEFKLLVREAHKRGIEVVMDVVFNHTVEGNDKGP-- 353
Y +++ ++ +++F L+ +AH+RG++V++D+V NHT +D+ P
Sbjct: 67 DYYAIMDEFG------------TMDDFDELLAQAHRRGLKVILDLVINHT---SDEHPWF 111
Query: 354 ILSFRGVDN--------------------------SVYYMLAPKGEFY--NYSGCGNTFN 385
I S DN S + G++Y + N
Sbjct: 112 IESRSSRDNPKRDWYIWRDGKDGREPNNWESIFGGSAWQYDERTGQYYLHIFDVKQPDLN 171
Query: 386 CNHPVVRQFIVDCLRYWVTEMHVDGFRFDLASIMTRGSSLWDSVNVYGI 434
+ VRQ + + + +W+ + +DGFR D S + + L D N G+
Sbjct: 172 WENSEVRQALYEMVNWWL-DKGIDGFRIDAISHIKKKPGLPDLPNPKGL 219
>pdb|4GIN|A Chain A, Crystal Structure Of The Mutb R284c Mutant From Crystals
Soaked With The Inhibitor Deoxynojirimycin
Length = 584
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 51/218 (23%), Positives = 93/218 (42%), Gaps = 51/218 (23%)
Query: 237 RDLIIYEVHVRGFTRHESSKTEHPGTYLGVVEKLDHLKDLGINCLELMPCHEF----NEL 292
+ + Y+V+ R F + + + G + G+ EKLD+LK LGI+ + + P + N
Sbjct: 35 KSAVFYQVYPRSF---KDTNGDGIGDFKGLTEKLDYLKGLGIDAIWINPHYASPNTDNGY 91
Query: 293 EYFSYNSVLGDYNYSSAGIRNCGHDAINEFKLLVREAHKRGIEVVMDVVFNHTV------ 346
+ Y V+ +Y + +F L+ E KRG+ +++DVV NH+
Sbjct: 92 DISDYREVMKEYG------------TMEDFDRLMAELKKRGMRLMVDVVINHSSDQHEWF 139
Query: 347 ---------------------EGNDKGPILSFRGVDNSVYYMLAPKGEFY-NYSGCGN-T 383
+G++ SF G S + G++Y +Y G
Sbjct: 140 KSSRASKDNPYRDYYFWRDGKDGHEPNNYPSFFG--GSAWEKDPVTGQYYLHYFGRQQPD 197
Query: 384 FNCNHPVVRQFIVDCLRYWVTEMHVDGFRFDLASIMTR 421
N + P +R+ + LR+W+ + V G RFD + ++
Sbjct: 198 LNWDTPKLREELYAMLRFWL-DKGVSGMRFDTVATYSK 234
>pdb|4AEE|A Chain A, Crystal Structure Of Maltogenic Amylase From S.Marinus
pdb|4AEE|B Chain B, Crystal Structure Of Maltogenic Amylase From S.Marinus
Length = 696
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 46/200 (23%), Positives = 83/200 (41%), Gaps = 61/200 (30%)
Query: 261 GTYLGVVEKLDHLKDLGINCLELMPC------HEFNELEYFSYNSVLGDYNYSSAGIRNC 314
G G+++ +DHL+DLG+ + L P H ++ ++Y S + LG
Sbjct: 262 GDLAGIMKHIDHLEDLGVETIYLTPIFSSTSYHRYDTIDYKSIDKYLG------------ 309
Query: 315 GHDAINEFKLLVREAHKRGIEVVMDVVFNHTVEGNDKGPILSFRGVDNSVYY----MLAP 370
+ +F+ LV+ H R I++V+D+ +HT N+ + + R +NS Y+ L+P
Sbjct: 310 ---TMEDFEKLVQVLHSRKIKIVLDITMHHTNPCNELF-VKALREGENSPYWEMFSFLSP 365
Query: 371 -------------------KGEFYNYSGCGNT---------------FNCNHPVVRQFIV 396
E Y N FN ++P + +
Sbjct: 366 PPKEIVELMLKYIDGEECRSRELYKLDYFRNNKPFYEAFFNIWLMAKFNHDNPRTVDYFI 425
Query: 397 DCLRYWVTEMHVDGFRFDLA 416
D ++W+ + +DGFR D+A
Sbjct: 426 DITKFWIDK-GIDGFRIDVA 444
>pdb|2PWF|A Chain A, Crystal Structure Of The Mutb D200a Mutant In Complex With
Glucose
pdb|2PWF|B Chain B, Crystal Structure Of The Mutb D200a Mutant In Complex With
Glucose
pdb|2PWF|C Chain C, Crystal Structure Of The Mutb D200a Mutant In Complex With
Glucose
pdb|2PWF|D Chain D, Crystal Structure Of The Mutb D200a Mutant In Complex With
Glucose
Length = 556
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 50/218 (22%), Positives = 92/218 (42%), Gaps = 51/218 (23%)
Query: 237 RDLIIYEVHVRGFTRHESSKTEHPGTYLGVVEKLDHLKDLGINCLELMPCHEF----NEL 292
+ + Y+V+ R F + + + G + G+ EKLD+LK LGI+ + + P + N
Sbjct: 7 KSAVFYQVYPRSF---KDTNGDGIGDFKGLTEKLDYLKGLGIDAIWINPHYASPNTDNGY 63
Query: 293 EYFSYNSVLGDYNYSSAGIRNCGHDAINEFKLLVREAHKRGIEVVMDVVFNHTV------ 346
+ Y V+ +Y + +F L+ E KRG+ +++DVV NH+
Sbjct: 64 DISDYREVMKEYG------------TMEDFDRLMAELKKRGMRLMVDVVINHSSDQHEWF 111
Query: 347 ---------------------EGNDKGPILSFRGVDNSVYYMLAPKGEFY-NYSGCGN-T 383
+G++ SF G S + G++Y +Y G
Sbjct: 112 KSSRASKDNPYRDYYFWRDGKDGHEPNNYPSFFG--GSAWEKDPVTGQYYLHYFGRQQPD 169
Query: 384 FNCNHPVVRQFIVDCLRYWVTEMHVDGFRFDLASIMTR 421
N + P +R+ + LR+W+ + V G RF + ++
Sbjct: 170 LNWDTPKLREELYAMLRFWL-DKGVSGMRFATVATYSK 206
>pdb|3AMK|A Chain A, Structure Of The Starch Branching Enzyme I (Bei) From
Oryza Sativa L
Length = 702
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 52/185 (28%), Positives = 79/185 (42%), Gaps = 24/185 (12%)
Query: 241 IYEVHVRGFTRHESSKTEHPGTYLGVVEK-LDHLKDLGINCLELMPCHEFNELEYFSYNS 299
IYE HV G + E + TY + L ++ N ++LM E + F Y+
Sbjct: 183 IYEAHV-GMSGEEPEVS----TYREFADNVLPRIRANNYNTVQLMAIMEHSYYASFGYHV 237
Query: 300 VLGDYNYSSAGIRNCGHDAINEFKLLVREAHKRGIEVVMDVVFNHTVEGNDKGPILSFRG 359
N+ + R+ + K LV +AH G+ V+MDVV +H G G
Sbjct: 238 T----NFFAVSSRSG---TPEDLKYLVDKAHSLGLRVLMDVVHSHASNNVTDG----LNG 286
Query: 360 VD-----NSVYYMLAPKGEFYNYSGCGNTFNCNHPVVRQFIVDCLRYWVTEMHVDGFRFD 414
D + Y+ +G Y+ FN + V +F++ LRYW+ E DGFRFD
Sbjct: 287 YDVGQNTHESYFHTGDRG--YHKLWDSRLFNYANWEVLRFLLSNLRYWMDEFMFDGFRFD 344
Query: 415 LASIM 419
+ M
Sbjct: 345 GVTSM 349
>pdb|3AML|A Chain A, Structure Of The Starch Branching Enzyme I (Bei) From
Oryza Sativa L
Length = 755
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 52/185 (28%), Positives = 79/185 (42%), Gaps = 24/185 (12%)
Query: 241 IYEVHVRGFTRHESSKTEHPGTYLGVVEK-LDHLKDLGINCLELMPCHEFNELEYFSYNS 299
IYE HV G + E + TY + L ++ N ++LM E + F Y+
Sbjct: 183 IYEAHV-GMSGEEPEVS----TYREFADNVLPRIRANNYNTVQLMAIMEHSYYASFGYHV 237
Query: 300 VLGDYNYSSAGIRNCGHDAINEFKLLVREAHKRGIEVVMDVVFNHTVEGNDKGPILSFRG 359
N+ + R+ + K LV +AH G+ V+MDVV +H G G
Sbjct: 238 T----NFFAVSSRSG---TPEDLKYLVDKAHSLGLRVLMDVVHSHASNNVTDG----LNG 286
Query: 360 VD-----NSVYYMLAPKGEFYNYSGCGNTFNCNHPVVRQFIVDCLRYWVTEMHVDGFRFD 414
D + Y+ +G Y+ FN + V +F++ LRYW+ E DGFRFD
Sbjct: 287 YDVGQNTHESYFHTGDRG--YHKLWDSRLFNYANWEVLRFLLSNLRYWMDEFMFDGFRFD 344
Query: 415 LASIM 419
+ M
Sbjct: 345 GVTSM 349
>pdb|3K8L|A Chain A, Crystal Structure Of Susg-D498n Mutant With Maltoheptaose
pdb|3K8L|B Chain B, Crystal Structure Of Susg-D498n Mutant With Maltoheptaose
Length = 669
Score = 49.7 bits (117), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 41/87 (47%), Gaps = 21/87 (24%)
Query: 265 GVVEKLDHLKDLGINCLELMPCHE------FNELEYFSYNSVLGDYNYSSAGIRNCGHDA 318
GV +KLD+L LG+ L L P H ++ +Y N LG
Sbjct: 61 GVTQKLDYLNQLGVKALWLSPIHPCMSYHGYDVTDYTKVNPQLG---------------T 105
Query: 319 INEFKLLVREAHKRGIEVVMDVVFNHT 345
++F LV EAH RGI++ +D V NHT
Sbjct: 106 ESDFDRLVTEAHNRGIKIYLDYVMNHT 132
>pdb|1M7X|A Chain A, The X-Ray Crystallographic Structure Of Branching Enzyme
pdb|1M7X|B Chain B, The X-Ray Crystallographic Structure Of Branching Enzyme
pdb|1M7X|C Chain C, The X-Ray Crystallographic Structure Of Branching Enzyme
pdb|1M7X|D Chain D, The X-Ray Crystallographic Structure Of Branching Enzyme
Length = 617
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 70/292 (23%), Positives = 109/292 (37%), Gaps = 58/292 (19%)
Query: 146 KTGDVWHVFLKGDFKDMLYGYKF---DGKFSPQEGHYFDPTKIVLDPYAKAVISRAQFGV 202
K +W +F+ G LY Y+ +G ++ DPYA R
Sbjct: 59 KESGIWELFIPGAHNGQLYKYEMIDANGNL-----------RLKSDPYAFEAQMR----- 102
Query: 203 LGPDENCWPQMACLV-PTPEDEFDWEGDLPLKYPQRDLIIYEVHVRGFTRHESSKTEHPG 261
P+ A L+ PE E + IYEVH+ + RH +
Sbjct: 103 --------PETASLICGLPEKVVQTEERKKANQFDAPISIYEVHLGSWRRHTDNNF---- 150
Query: 262 TYLGVVEKLDHL----KDLGINCLELMPCHEFNELEYFSYNSVLGDYNYSSAGI----RN 313
+L E D L K +G LEL+P +E + G + Y G+ R
Sbjct: 151 -WLSYRELADQLVPYAKWMGFTHLELLPINE---------HPFDGSWGYQPTGLYAPTRR 200
Query: 314 CGHDAINEFKLLVREAHKRGIEVVMDVVFNHTVEGNDKGPILSFRGVDNSVYYMLAPKGE 373
G ++F+ + AH G+ V++D V H D + F G + +Y P+ E
Sbjct: 201 FG--TRDDFRYFIDAAHAAGLNVILDWVPGHFP--TDDFALAEFDGTN--LYEHSDPR-E 253
Query: 374 FYNYSGCGNTFNCNHPVVRQFIVDCLRYWVTEMHVDGFRFD-LASIMTRGSS 424
Y+ +N V F+V YW+ +D R D +AS++ R S
Sbjct: 254 GYHQDWNTLIYNYGRREVSNFLVGNALYWIERFGIDALRVDAVASMIYRDYS 305
>pdb|1LWH|A Chain A, Crystal Structure Of T. Maritima
4-Alpha-Glucanotransferase
pdb|1LWH|B Chain B, Crystal Structure Of T. Maritima
4-Alpha-Glucanotransferase
pdb|1LWJ|A Chain A, Crystal Structure Of T. Maritima 4-Alpha-
GlucanotransferaseACARBOSE COMPLEX
pdb|1LWJ|B Chain B, Crystal Structure Of T. Maritima 4-Alpha-
GlucanotransferaseACARBOSE COMPLEX
Length = 441
Score = 49.3 bits (116), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 51/208 (24%), Positives = 90/208 (43%), Gaps = 44/208 (21%)
Query: 239 LIIYEVHVRGFTRHESSKTEHPGTYLGVVEKLDHLKDLGINCLELMPCHEFNELEYFSYN 298
+I Y+++VR F + G + G+ + +LK+LGI+ + LMP F+ + + Y+
Sbjct: 1 MIGYQIYVRSF---RDGNLDGVGDFRGLKNAVSYLKELGIDFVWLMPV--FSSISFHGYD 55
Query: 299 SVLGDYNYSSAGIRNCGHDAINEFKLLVREAHKRGIEVVMDVVFNHT------------- 345
V+ Y++ + + + EFK ++ H GI+VV+D+ +HT
Sbjct: 56 -VVDFYSFKAE------YGSEREFKEMIEAFHDSGIKVVLDLPIHHTGFLHTWFQKALKG 108
Query: 346 --------VEGNDKGPILSFRGVDNSVYYMLAPKGEFYN--YSGCGNTFNCNHPVV---- 391
V N + + R D + G FY + N ++P V
Sbjct: 109 DPHYRDYYVWANKETDLDERREWDGEKIWHPLEDGRFYRGLFGPFSPDLNYDNPQVFDEM 168
Query: 392 RQFIVDCLRYWVTEMHVDGFRFDLASIM 419
++ ++ L +M VDGFRFD A M
Sbjct: 169 KRLVLHLL-----DMGVDGFRFDAAKHM 191
>pdb|3K8K|A Chain A, Crystal Structure Of Susg
pdb|3K8K|B Chain B, Crystal Structure Of Susg
pdb|3K8M|A Chain A, Crystal Structure Of Susg With Acarbose
pdb|3K8M|B Chain B, Crystal Structure Of Susg With Acarbose
Length = 669
Score = 49.3 bits (116), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 41/87 (47%), Gaps = 21/87 (24%)
Query: 265 GVVEKLDHLKDLGINCLELMPCHE------FNELEYFSYNSVLGDYNYSSAGIRNCGHDA 318
GV +KLD+L LG+ L L P H ++ +Y N LG
Sbjct: 61 GVTQKLDYLNQLGVKALWLSPIHPCXSYHGYDVTDYTKVNPQLG---------------T 105
Query: 319 INEFKLLVREAHKRGIEVVMDVVFNHT 345
++F LV EAH RGI++ +D V NHT
Sbjct: 106 ESDFDRLVTEAHNRGIKIYLDYVXNHT 132
>pdb|4AIE|A Chain A, Structure Of Glucan-1,6-Alpha-Glucosidase From
Lactobacillus Acidophilus Ncfm
Length = 549
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/213 (21%), Positives = 93/213 (43%), Gaps = 41/213 (19%)
Query: 237 RDLIIYEVHVRGFTRHESSKTEHPGTYLGVVEKLDHLKDLGINCLELMPCHEFNELEYFS 296
++ ++Y+V+ + F + S + G G++ +LD+L+ LGI+ + L P +
Sbjct: 8 KNAVVYQVYPKSF---QDSNGDGIGDLQGIISRLDYLEKLGIDAIWLSPV--------YQ 56
Query: 297 YNSVLGDYNYSSAGIRNCGHDAINEFKLLVREAHKRGIEVVMDVVFNHTVEGNDKGPILS 356
V Y+ S + + + + L+ +A + I++VMD+V NHT + + K + +
Sbjct: 57 SPGVDNGYDISDYEAIDPQYGTMADMDELISKAKEHHIKIVMDLVVNHTSDQH-KWFVEA 115
Query: 357 FRGVDNSV--YYML--------------APKGEFYNYSGCGNTF------------NCNH 388
+G DN YY+ A G + Y + N +
Sbjct: 116 KKGKDNQYRDYYIWRDPVDEHEPNDLKSAFSGSAWKYDERSGQYYLHFFADQQPDLNWQN 175
Query: 389 PVVRQFIVDCLRYWVTEMHVDGFRFDLASIMTR 421
+RQ I + + +W+ + + GFR D+ ++ +
Sbjct: 176 TELRQKIYNMMNFWL-DKGIGGFRMDVIELIGK 207
>pdb|1CYG|A Chain A, Cyclodextrin Glucanotransferase (E.C.2.4.1.19) (Cgtase)
Length = 680
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 50/202 (24%), Positives = 88/202 (43%), Gaps = 35/202 (17%)
Query: 261 GTYLGVVEKLD--HLKDLGINCLELMPCHEFNELEYFS-YNSVLGDYNYSSAGIR----- 312
G + G++ K++ +L D+G+ + + E FS N G +Y R
Sbjct: 49 GDWQGIINKINDGYLTDMGVTAIWISQPVE----NVFSVMNDASGSASYHGYWARDFKKP 104
Query: 313 NCGHDAINEFKLLVREAHKRGIEVVMDVVFNHTVEGNDKGP--ILSFRGVDN-SVYYMLA 369
N +++F+ LV AH +GI+V++D NHT ++ P + + R DN ++
Sbjct: 105 NPFFGTLSDFQRLVDAAHAKGIKVIIDFAPNHTSPASETNPSYMENGRLYDNGTLLGGYT 164
Query: 370 PKGEFYNYSGCGNTF-----------------NCNHPVVRQFIVDCLRYWVTEMHVDGFR 412
Y + G TF N +PV+ +++ D ++ W+ +M +DG R
Sbjct: 165 NDANMYFHHNGGTTFSSLEDGIYRNLFDLADLNHQNPVIDRYLKDAVKMWI-DMGIDGIR 223
Query: 413 FDLASIMTRG--SSLWDSVNVY 432
D M G SL D ++ Y
Sbjct: 224 MDAVKHMPFGWQKSLMDEIDNY 245
>pdb|3UCQ|A Chain A, Crystal Structure Of Amylosucrase From Deinococcus
Geothermalis
pdb|3UER|A Chain A, Crystal Structure Of Amylosucrase From Deinococcus
Geothermalis In Complex With Turanose
Length = 655
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 41/89 (46%), Gaps = 10/89 (11%)
Query: 261 GTYLGVVEKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYNYSSAGIRNCGHD--A 318
GT GV E+LD+L+ LG+ L LMP E E D Y+ R D
Sbjct: 108 GTLKGVEERLDYLEGLGVKYLHLMPLLRPREGE--------NDGGYAVQDYRAVRPDLGT 159
Query: 319 INEFKLLVREAHKRGIEVVMDVVFNHTVE 347
+++ L R RGI +V+D+V NH
Sbjct: 160 MDDLSALARALRGRGISLVLDLVLNHVAR 188
>pdb|2ZIC|A Chain A, Crystal Structure Of Streptococcus Mutans Dextran
Glucosidase
Length = 543
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 44/207 (21%), Positives = 86/207 (41%), Gaps = 42/207 (20%)
Query: 241 IYEVHVRGFTRHESSKTEHPGTYLGVVEKLDHLKDLGINCLELMPCHEFNELEYFSYNSV 300
+Y+++ + F + + G G+ KLD+L+ LG+ + L P Y+S
Sbjct: 11 VYQIYPKSFM---DTNGDGIGDLKGITSKLDYLQKLGVMAIWLSPV----------YDSP 57
Query: 301 LGDYNYSSAGIRNCGH--DAINEFKLLVREAHKRGIEVVMDVVFNHTVEGNDKGPILSFR 358
+ D Y A + + L+ +A RGI+++MD+V NHT ++ + R
Sbjct: 58 MDDNGYDIANYEAIADIFGNMADMDNLLTQAKMRGIKIIMDLVVNHT--SDEHAWFIEAR 115
Query: 359 GVDNSV---YYMLAPK---------GEFYNYSGCGNTF------------NCNHPVVRQF 394
+S YY+ + G + Y + + N + +RQ
Sbjct: 116 EHPDSSERDYYIWCDQPNDLESIFGGSAWQYDDKSDQYYLHFFSKKQPDLNWENANLRQK 175
Query: 395 IVDCLRYWVTEMHVDGFRFDLASIMTR 421
I D + +W+ + + GFR D+ ++ +
Sbjct: 176 IYDMMNFWI-DKGIGGFRMDVIDMIGK 201
>pdb|2ZID|A Chain A, Crystal Structure Of Dextran Glucosidase E236q Complex
With Isomaltotriose
Length = 543
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 44/207 (21%), Positives = 86/207 (41%), Gaps = 42/207 (20%)
Query: 241 IYEVHVRGFTRHESSKTEHPGTYLGVVEKLDHLKDLGINCLELMPCHEFNELEYFSYNSV 300
+Y+++ + F + + G G+ KLD+L+ LG+ + L P Y+S
Sbjct: 11 VYQIYPKSFM---DTNGDGIGDLKGITSKLDYLQKLGVMAIWLSPV----------YDSP 57
Query: 301 LGDYNYSSAGIRNCGH--DAINEFKLLVREAHKRGIEVVMDVVFNHTVEGNDKGPILSFR 358
+ D Y A + + L+ +A RGI+++MD+V NHT ++ + R
Sbjct: 58 MDDNGYDIANYEAIADIFGNMADMDNLLTQAKMRGIKIIMDLVVNHT--SDEHAWFIEAR 115
Query: 359 GVDNSV---YYMLAPK---------GEFYNYSGCGNTF------------NCNHPVVRQF 394
+S YY+ + G + Y + + N + +RQ
Sbjct: 116 EHPDSSERDYYIWCDQPNDLESIFGGSAWQYDDKSDQYYLHFFSKKQPDLNWENANLRQK 175
Query: 395 IVDCLRYWVTEMHVDGFRFDLASIMTR 421
I D + +W+ + + GFR D+ ++ +
Sbjct: 176 IYDMMNFWI-DKGIGGFRMDVIDMIGK 201
>pdb|4CGT|A Chain A, Deletion Mutant Delta(145-150), F151d Of Cyclodextrin
Glycosyltransferase
Length = 678
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 43/203 (21%), Positives = 78/203 (38%), Gaps = 64/203 (31%)
Query: 261 GTYLGVVEKLD--HLKDLGINCLELMPCHEFNELEYFSYNSVLGDYNYSSAGIRNCGH-- 316
G + G++ K++ + DLG+ L + E ++ NYS G+ N +
Sbjct: 52 GDWQGLINKINDNYFSDLGVTALWISQPVE----------NIFATINYS--GVTNTAYHG 99
Query: 317 -------------DAINEFKLLVREAHKRGIEVVMDVVFNHTVEGN-------DKGPILS 356
+ +F+ L+ AH +GI++V+D NHT + D G ++
Sbjct: 100 YWARDFKKTNPYFGTMADFQNLITTAHAKGIKIVIDFAPNHTSPADAENGRLYDNGTLVG 159
Query: 357 -----------------FRGVDNSVYYMLAPKGEFYNYSGCGNTFNCNHPVVRQFIVDCL 399
F ++N +Y L + FN N+ + ++ D +
Sbjct: 160 GYTNDTNGYFHHNGGSDFSSLENGIYKNLYDLAD----------FNHNNATIDKYFKDAI 209
Query: 400 RYWVTEMHVDGFRFDLASIMTRG 422
+ W+ +M VDG R D M G
Sbjct: 210 KLWL-DMGVDGIRVDAVKHMPLG 231
>pdb|1QHO|A Chain A, Five-Domain Alpha-Amylase From Bacillus
Stearothermophilus, MaltoseACARBOSE COMPLEX
pdb|1QHP|A Chain A, Five-Domain Alpha-Amylase From Bacillus
Stearothermophilus, Maltose Complex
Length = 686
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 56/119 (47%), Gaps = 10/119 (8%)
Query: 265 GVVEKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYNYSSAGIRNCGHDAIN--EF 322
GV +KL +LK LG+ + L P + L+ + G + Y + + N F
Sbjct: 53 GVRQKLPYLKQLGVTTIWLSPV--LDNLDTLAGTDNTGYHGYWTRDFKQIEEHFGNWTTF 110
Query: 323 KLLVREAHKRGIEVVMDVVFNHTV--EGND----KGPILSFRGVDNSVYYMLAPKGEFY 375
LV +AH+ GI+V++D V NH+ + ND +G L G Y+ A KG F+
Sbjct: 111 DTLVNDAHQNGIKVIVDFVPNHSTPFKANDSTFAEGGALYNNGTYMGNYFDDATKGYFH 169
>pdb|6CGT|A Chain A, Hoxa Complex Of Cyclodextrin Glycosyltransferase Mutant
Length = 684
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/199 (23%), Positives = 78/199 (39%), Gaps = 50/199 (25%)
Query: 261 GTYLGVVEKLD--HLKDLGINCLELMPCHEFNELEYFSYNSVLGDYNYSSAGIRNCGH-- 316
G + G++ K++ + DLG+ L + E ++ NYS G+ N +
Sbjct: 52 GDWQGLINKINDNYFSDLGVTALWISQPVE----------NIFATINYS--GVTNTAYHG 99
Query: 317 -------------DAINEFKLLVREAHKRGIEVVMDVVFNHTVEGNDKGPILSFRG--VD 361
+ +F+ L+ AH +GI++V+D NHT + + G D
Sbjct: 100 YWARDFKKTNPYFGTMADFQNLITTAHAKGIKIVIDFAPNHTSPAMETDTSFAENGRLYD 159
Query: 362 NSVY---YMLAPKGEFYNYSGCG----------NT-----FNCNHPVVRQFIVDCLRYWV 403
N Y G F++ G NT FN N+ + ++ D ++ W+
Sbjct: 160 NGTLVGGYTNDTNGYFHHNGGSDFSSLENGIYKNTYDLADFNHNNATIDKYFKDAIKLWL 219
Query: 404 TEMHVDGFRFDLASIMTRG 422
+M VDG R D M G
Sbjct: 220 -DMGVDGIRVDAVKHMPLG 237
>pdb|1CGT|A Chain A, Structure Of Cyclodextrin Glycosyltransferase Refined At
2.0 Angstroms Resolution
Length = 684
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/199 (22%), Positives = 77/199 (38%), Gaps = 50/199 (25%)
Query: 261 GTYLGVVEKLD--HLKDLGINCLELMPCHEFNELEYFSYNSVLGDYNYSSAGIRNCGH-- 316
G + G++ K++ + DLG+ L + E ++ NYS G+ N +
Sbjct: 52 GDWQGLINKINDNYFSDLGVTALWISQPVE----------NIFATINYS--GVTNTAYHG 99
Query: 317 -------------DAINEFKLLVREAHKRGIEVVMDVVFNHTVEGNDKGPILSFRG--VD 361
+ +F+ L+ AH +GI++V+D NHT + + G D
Sbjct: 100 YWARDFKKTNPYFGTMADFQNLITTAHAKGIKIVIDFAPNHTSPAMETDTSFAENGRLYD 159
Query: 362 NSVY---YMLAPKGEFYNYSGCGNT---------------FNCNHPVVRQFIVDCLRYWV 403
N Y G F++ G + FN N+ + ++ D ++ W+
Sbjct: 160 NGTLVGGYTNDTNGYFHHNGGSDFSSLENGIYKNLYDLADFNHNNATIDKYFKDAIKLWL 219
Query: 404 TEMHVDGFRFDLASIMTRG 422
+M VDG R D M G
Sbjct: 220 -DMGVDGIRVDAVKHMPLG 237
>pdb|8CGT|A Chain A, Structure Of Cyclodextrin Glycosyltransferase Complexed
With A Thio-Maltohexaose
pdb|9CGT|A Chain A, Structure Of Cyclodextrin Glycosyltransferase Complexed
With A Thio-Maltopentaose
pdb|3CGT|A Chain A, Structure Of Cyclodextrin Glycosyltransferase Complexed
With Its Main Product Beta-Cyclodextrin
Length = 684
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/199 (22%), Positives = 77/199 (38%), Gaps = 50/199 (25%)
Query: 261 GTYLGVVEKLD--HLKDLGINCLELMPCHEFNELEYFSYNSVLGDYNYSSAGIRNCGH-- 316
G + G++ K++ + DLG+ L + E ++ NYS G+ N +
Sbjct: 52 GDWQGLINKINDNYFSDLGVTALWISQPVE----------NIFATINYS--GVTNTAYHG 99
Query: 317 -------------DAINEFKLLVREAHKRGIEVVMDVVFNHTVEGNDKGPILSFRG--VD 361
+ +F+ L+ AH +GI++V+D NHT + + G D
Sbjct: 100 YWARDFKKTNPYFGTMADFQNLITTAHAKGIKIVIDFAPNHTSPAMETDTSFAENGRLYD 159
Query: 362 NSVY---YMLAPKGEFYNYSGCGNT---------------FNCNHPVVRQFIVDCLRYWV 403
N Y G F++ G + FN N+ + ++ D ++ W+
Sbjct: 160 NGTLVGGYTNDTNGYFHHNGGSDFSSLENGIYKNLYDLADFNHNNATIDKYFKDAIKLWL 219
Query: 404 TEMHVDGFRFDLASIMTRG 422
+M VDG R D M G
Sbjct: 220 -DMGVDGIRVDAVKHMPLG 237
>pdb|4FLR|A Chain A, Crystal Structure Of Amylosucrase Double Mutant
A289p-F290l From Neisseria Polysaccharea
Length = 628
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 40/85 (47%), Gaps = 6/85 (7%)
Query: 261 GTYLGVVEKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYNYSSAGIRNCGHDAIN 320
G G+ +K+ + ++LG+ L LMP + E G Y SS N I
Sbjct: 110 GDLKGLKDKIPYFQELGLTYLHLMPLFKCPE------GKSDGGYAVSSYRDVNPALGTIG 163
Query: 321 EFKLLVREAHKRGIEVVMDVVFNHT 345
+ + ++ H+ GI V+D +FNHT
Sbjct: 164 DLREVIAALHEAGISAVVDFIFNHT 188
>pdb|3UEQ|A Chain A, Crystal Structure Of Amylosucrase From Neisseria
Polysaccharea In Complex With Turanose
Length = 632
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 40/85 (47%), Gaps = 6/85 (7%)
Query: 261 GTYLGVVEKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYNYSSAGIRNCGHDAIN 320
G G+ +K+ + ++LG+ L LMP + E G Y SS N I
Sbjct: 114 GDLKGLKDKIPYFQELGLTYLHLMPLFKCPE------GKSDGGYAVSSYRDVNPALGTIG 167
Query: 321 EFKLLVREAHKRGIEVVMDVVFNHT 345
+ + ++ H+ GI V+D +FNHT
Sbjct: 168 DLREVIAALHEAGISAVVDFIFNHT 192
>pdb|4FLO|A Chain A, Crystal Structure Of Amylosucrase Double Mutant
A289p-F290c From Neisseria Polysaccharea
Length = 628
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 40/85 (47%), Gaps = 6/85 (7%)
Query: 261 GTYLGVVEKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYNYSSAGIRNCGHDAIN 320
G G+ +K+ + ++LG+ L LMP + E G Y SS N I
Sbjct: 110 GDLKGLKDKIPYFQELGLTYLHLMPLFKCPE------GKSDGGYAVSSYRDVNPALGTIG 163
Query: 321 EFKLLVREAHKRGIEVVMDVVFNHT 345
+ + ++ H+ GI V+D +FNHT
Sbjct: 164 DLREVIAALHEAGISAVVDFIFNHT 188
>pdb|4FLS|A Chain A, Crystal Structure Of Amylosucrase Inactive Double Mutant
F290k-E328q From Neisseria Polysaccharea In Complex With
Sucrose
Length = 628
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 40/85 (47%), Gaps = 6/85 (7%)
Query: 261 GTYLGVVEKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYNYSSAGIRNCGHDAIN 320
G G+ +K+ + ++LG+ L LMP + E G Y SS N I
Sbjct: 110 GDLKGLKDKIPYFQELGLTYLHLMPLFKCPE------GKSDGGYAVSSYRDVNPALGTIG 163
Query: 321 EFKLLVREAHKRGIEVVMDVVFNHT 345
+ + ++ H+ GI V+D +FNHT
Sbjct: 164 DLREVIAALHEAGISAVVDFIFNHT 188
>pdb|4FLQ|A Chain A, Crystal Structure Of Amylosucrase Double Mutant
A289p-F290i From Neisseria Polysaccharea
Length = 628
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 40/85 (47%), Gaps = 6/85 (7%)
Query: 261 GTYLGVVEKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYNYSSAGIRNCGHDAIN 320
G G+ +K+ + ++LG+ L LMP + E G Y SS N I
Sbjct: 110 GDLKGLKDKIPYFQELGLTYLHLMPLFKCPE------GKSDGGYAVSSYRDVNPALGTIG 163
Query: 321 EFKLLVREAHKRGIEVVMDVVFNHT 345
+ + ++ H+ GI V+D +FNHT
Sbjct: 164 DLREVIAALHEAGISAVVDFIFNHT 188
>pdb|1G5A|A Chain A, Amylosucrase From Neisseria Polysaccharea
pdb|1JG9|A Chain A, Crystal Structure Of Amylosucrase From Neisseria
Polysaccharea In Complex With D-glucose
pdb|1MW1|A Chain A, Amylosucrase Soaked With 14mm Sucrose.
pdb|1MW2|A Chain A, Amylosucrase Soaked With 100mm Sucrose
pdb|1MW3|A Chain A, Amylosucrase Soaked With 1m Sucrose
Length = 628
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 40/85 (47%), Gaps = 6/85 (7%)
Query: 261 GTYLGVVEKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYNYSSAGIRNCGHDAIN 320
G G+ +K+ + ++LG+ L LMP + E G Y SS N I
Sbjct: 110 GDLKGLKDKIPYFQELGLTYLHLMPLFKCPE------GKSDGGYAVSSYRDVNPALGTIG 163
Query: 321 EFKLLVREAHKRGIEVVMDVVFNHT 345
+ + ++ H+ GI V+D +FNHT
Sbjct: 164 DLREVIAALHEAGISAVVDFIFNHT 188
>pdb|2GUY|A Chain A, Orthorhombic Crystal Structure (Space Group P21212) Of
Aspergillus Niger Alpha-Amylase At 1.6 A Resolution
pdb|2GVY|A Chain A, Monoclinic Crystal Form Of Aspergillus Niger Alpha-Amylase
In Complex With Maltose At 1.8 A Resolution
pdb|2GVY|B Chain B, Monoclinic Crystal Form Of Aspergillus Niger Alpha-Amylase
In Complex With Maltose At 1.8 A Resolution
pdb|6TAA|A Chain A, Structure And Molecular Model Refinement Of Aspergillus
Oryzae (Taka) Alpha-Amylase: An Application Of The
Simulated-Annealing Method
pdb|7TAA|A Chain A, Family 13 Alpha Amylase In Complex With Acarbose
pdb|3KWX|A Chain A, Chemically Modified Taka Alpha-Amylase
Length = 478
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 58/258 (22%), Positives = 99/258 (38%), Gaps = 43/258 (16%)
Query: 237 RDLIIYEVHVRGFTRHESSKTEH---------PGTYLGVVEKLDHLKDLGINCLELMPCH 287
R IY + F R + S T GT+ G+++KLD+++ +G + + P
Sbjct: 7 RSQSIYFLLTDRFARTDGSTTATCNTADQKYCGGTWQGIIDKLDYIQGMGFTAIWITPVT 66
Query: 288 EFNELEYFSYNSVLGDYNYSSAGIRNCGHDAINEFKLLVREAHKRGIEVVMDVVFNHTVE 347
+ +Y Y N + ++ K L H+RG+ +++DVV NH
Sbjct: 67 A-QLPQTTAYGDAYHGYWQQDIYSLNENYGTADDLKALSSALHERGMYLMVDVVANHM-- 123
Query: 348 GNDKGPILSFRGVDNSVYYMLAPKGEFY------NYSGCGNTFNC--------------N 387
G D + VD SV+ + + F+ NY +C
Sbjct: 124 GYDG----AGSSVDYSVFKPFSSQDYFHPFCFIQNYEDQTQVEDCWLGDNTVSLPDLDTT 179
Query: 388 HPVVRQFIVDCLRYWVTEMHVDGFRFDLASIMTRGSSLWDSVN-VYGIPIEGDLLTTGTP 446
VV+ D + V+ +DG R D + + W N G+ G++L G P
Sbjct: 180 KDVVKNEWYDWVGSLVSNYSIDGLRIDTVKHVQK--DFWPGYNKAAGVYCIGEVL-DGDP 236
Query: 447 LRSPP---LIDLISNDPI 461
+ P ++D + N PI
Sbjct: 237 AYTCPYQNVMDGVLNYPI 254
>pdb|2TAA|A Chain A, Structure And Possible Catalytic Residues Of Taka-Amylase
A
pdb|2TAA|B Chain B, Structure And Possible Catalytic Residues Of Taka-Amylase
A
pdb|2TAA|C Chain C, Structure And Possible Catalytic Residues Of Taka-Amylase
A
Length = 478
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 58/258 (22%), Positives = 100/258 (38%), Gaps = 43/258 (16%)
Query: 237 RDLIIYEVHVRGFTRHESSKTEH---------PGTYLGVVEKLDHLKDLGINCLELMPCH 287
R IY + F R + S T GT+ G+++KLD+++ +G + + P
Sbjct: 7 RSQSIYFLLTDRFARTDGSTTATCNTADQKYCGGTWQGIIDKLDYIQGMGFTAIWITPVT 66
Query: 288 EFNELEYFSYNSVLGDYNYSSAGIRNCGHDAINEFKLLVREAHKRGIEVVMDVVFNHTVE 347
+ +Y Y + N + ++ K L H+RG+ +++DVV NH
Sbjct: 67 A-QLPQDCAYGDAYTGYWQTDIYSLNENYGTADDLKALSSALHERGMYLMVDVVANHM-- 123
Query: 348 GNDKGPILSFRGVDNSVYYMLAPKGEFY------NYSGCGNTFNC--------------N 387
G D + VD SV+ + + F+ NY +C
Sbjct: 124 GYDG----AGSSVDYSVFKPFSSQDYFHPFCFIQNYEDQTQVEDCWLGDNTVSLPDLDTT 179
Query: 388 HPVVRQFIVDCLRYWVTEMHVDGFRFDLASIMTRGSSLWDSVN-VYGIPIEGDLLTTGTP 446
VV+ D + V+ +DG R D + + W N G+ G++L G P
Sbjct: 180 KDVVKNEWYDWVGSLVSNYSIDGLRIDTVKHVQK--DFWPGYNKAAGVYCIGEVL-DGDP 236
Query: 447 LRSPP---LIDLISNDPI 461
+ P ++D + N PI
Sbjct: 237 AYTCPYQNVMDGVLNYPI 254
>pdb|1JGI|A Chain A, Crystal Structure Of The Active Site Mutant Glu328gln Of
Amylosucrase From Neisseria Polysaccharea In Complex
With The Natural Substrate Sucrose
Length = 628
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 40/85 (47%), Gaps = 6/85 (7%)
Query: 261 GTYLGVVEKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYNYSSAGIRNCGHDAIN 320
G G+ +K+ + ++LG+ L LMP + E G Y SS N I
Sbjct: 110 GDLKGLKDKIPYFQELGLTYLYLMPLFKCPE------GKSDGGYAVSSYRDVNPALGTIG 163
Query: 321 EFKLLVREAHKRGIEVVMDVVFNHT 345
+ + ++ H+ GI V+D +FNHT
Sbjct: 164 DLREVIAALHEAGISAVVDFIFNHT 188
>pdb|1MVY|A Chain A, Amylosucrase Mutant E328q Co-Crystallized With
Maltoheptaose.
pdb|1MW0|A Chain A, Amylosucrase Mutant E328q Co-crystallized With
Maltoheptaose Then Soaked With Maltoheptaose.
pdb|1S46|A Chain A, Covalent Intermediate Of The E328q Amylosucrase Mutant
pdb|1ZS2|A Chain A, Amylosucrase Mutant E328q In A Ternary Complex With
Sucrose And Maltoheptaose
Length = 628
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 40/85 (47%), Gaps = 6/85 (7%)
Query: 261 GTYLGVVEKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYNYSSAGIRNCGHDAIN 320
G G+ +K+ + ++LG+ L LMP + E G Y SS N I
Sbjct: 110 GDLKGLKDKIPYFQELGLTYLYLMPLFKCPE------GKSDGGYAVSSYRDVNPALGTIG 163
Query: 321 EFKLLVREAHKRGIEVVMDVVFNHT 345
+ + ++ H+ GI V+D +FNHT
Sbjct: 164 DLREVIAALHEAGISAVVDFIFNHT 188
>pdb|1PEZ|A Chain A, Bacillus Circulans Strain 251 Mutant A230v
Length = 686
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 42/199 (21%), Positives = 83/199 (41%), Gaps = 28/199 (14%)
Query: 261 GTYLGVVEKLD--HLKDLGINCLEL-MPCHEFNELEYFSYNSVLGDYNYSSAGIR--NCG 315
G + G++ K++ +L +G+ + + P + +S + + Y + + N
Sbjct: 52 GDWQGIINKINDGYLTGMGVTAIWISQPVENIYSIINYSGVNNTAYHGYWARDFKKTNPA 111
Query: 316 HDAINEFKLLVREAHKRGIEVVMDVVFNHTVEGNDKGPILSFRG--VDNSVY---YMLAP 370
+ I +F+ L+ AH + I+V++D NHT + P + G DN Y
Sbjct: 112 YGTIADFQNLIAAAHAKNIKVIIDFAPNHTSPASSDQPSFAENGRLYDNGTLLGGYTNDT 171
Query: 371 KGEFYNYSGCGNT---------------FNCNHPVVRQFIVDCLRYWVTEMHVDGFRFDL 415
+ F++ G + N N+ V ++ D ++ W+ ++ +DG R D+
Sbjct: 172 QNLFHHNGGTDFSTTENGIYKNLYDLADLNHNNSTVDVYLKDAIKMWL-DLGIDGIRMDV 230
Query: 416 ASIMTRG--SSLWDSVNVY 432
M G S +VN Y
Sbjct: 231 VKHMPFGWQKSFMAAVNNY 249
>pdb|1CGW|A Chain A, Site Directed Mutations Of The Active Site Residue
Tyrosine 195 Of Cyclodextrin Glycosyltransferase From
Bacillus Circulans Strain 251 Affecting Activity And
Product Specificity
Length = 686
Score = 39.3 bits (90), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 43/199 (21%), Positives = 83/199 (41%), Gaps = 28/199 (14%)
Query: 261 GTYLGVVEKLD--HLKDLGINCLEL-MPCHEFNELEYFSYNSVLGDYNYSSAGIR--NCG 315
G + G++ K++ +L +G+ + + P + +S + + Y + + N
Sbjct: 52 GDWQGIINKINDGYLTGMGVTAIWISQPVENIYSIINYSGVNNTAYHGYWARDFKKTNPA 111
Query: 316 HDAINEFKLLVREAHKRGIEVVMDVVFNHTVEGNDKGPILSFRG--VDNSVY---YMLAP 370
+ I +F+ L+ AH + I+V++D NHT + P + G DN Y
Sbjct: 112 YGTIADFQNLIAAAHAKNIKVIIDFAPNHTSPASSDQPSFAENGRLYDNGTLLGGYTNDT 171
Query: 371 KGEFYN-------------YSGCGNTFNCNH--PVVRQFIVDCLRYWVTEMHVDGFRFDL 415
+ F++ Y G+ + NH V ++ D ++ W+ ++ +DG R D
Sbjct: 172 QNLFHHNGGTDFSTTENGIYKNLGDLADLNHNNSTVDVYLKDAIKMWL-DLGIDGIRMDA 230
Query: 416 ASIMTRG--SSLWDSVNVY 432
M G S +VN Y
Sbjct: 231 VKHMPFGWQKSFMAAVNNY 249
>pdb|1V3K|A Chain A, Crystal Structure Of F283y Mutant Cyclodextrin
Glycosyltransferase
pdb|1V3K|B Chain B, Crystal Structure Of F283y Mutant Cyclodextrin
Glycosyltransferase
pdb|1V3M|A Chain A, Crystal Structure Of F283y Mutant Cyclodextrin
Glycosyltransferase Complexed With A Pseudo-Tetraose
Derived From Acarbose
pdb|1V3M|B Chain B, Crystal Structure Of F283y Mutant Cyclodextrin
Glycosyltransferase Complexed With A Pseudo-Tetraose
Derived From Acarbose
Length = 686
Score = 38.9 bits (89), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 44/199 (22%), Positives = 82/199 (41%), Gaps = 28/199 (14%)
Query: 261 GTYLGVVEKLD--HLKDLGINCLEL-MPCHEFNELEYFSYNSVLGDYNYSSAGIR--NCG 315
G + G++ K++ +L +GI + + P + +S + + Y + + N
Sbjct: 52 GDWQGIINKINDGYLTGMGITAIWISQPVENIYSVINYSGVNNTAYHGYWARDFKKTNPA 111
Query: 316 HDAINEFKLLVREAHKRGIEVVMDVVFNHTVEGNDKGPILSFRG--VDNSVY---YMLAP 370
+ + +FK L+ AH I+V++D NHT + P + G DN Y
Sbjct: 112 YGTMQDFKNLIDTAHAHNIKVIIDFAPNHTSPASSDDPSFAENGRLYDNGNLLGGYTNDT 171
Query: 371 KGEFYNYSGCGNT---------------FNCNHPVVRQFIVDCLRYWVTEMHVDGFRFDL 415
+ F++Y G + N N+ V ++ D ++ W+ ++ VDG R D
Sbjct: 172 QNLFHHYGGTDFSTIENGIYKNLYDLADLNHNNSSVDVYLKDAIKMWL-DLGVDGIRVDA 230
Query: 416 ASIMTRG--SSLWDSVNVY 432
M G S ++N Y
Sbjct: 231 VKHMPFGWQKSFMATINNY 249
>pdb|1D7F|A Chain A, Crystal Structure Of Asparagine 233-Replaced Cyclodextrin
Glucanotransferase From Alkalophilic Bacillus Sp. 1011
Determined At 1.9 A Resolution
pdb|1D7F|B Chain B, Crystal Structure Of Asparagine 233-Replaced Cyclodextrin
Glucanotransferase From Alkalophilic Bacillus Sp. 1011
Determined At 1.9 A Resolution
pdb|1DED|A Chain A, Crystal Structure Of Alkalophilic Asparagine 233-Replaced
Cyclodextrin Glucanotransferase Complexed With An
Inhibitor, Acarbose, At 2.0 A Resolution
pdb|1DED|B Chain B, Crystal Structure Of Alkalophilic Asparagine 233-Replaced
Cyclodextrin Glucanotransferase Complexed With An
Inhibitor, Acarbose, At 2.0 A Resolution
Length = 686
Score = 38.9 bits (89), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 44/199 (22%), Positives = 82/199 (41%), Gaps = 28/199 (14%)
Query: 261 GTYLGVVEKLD--HLKDLGINCLEL-MPCHEFNELEYFSYNSVLGDYNYSSAGIR--NCG 315
G + G++ K++ +L +GI + + P + +S + + Y + + N
Sbjct: 52 GDWQGIINKINDGYLTGMGITAIWISQPVENIYSVINYSGVNNTAYHGYWARDFKKTNPA 111
Query: 316 HDAINEFKLLVREAHKRGIEVVMDVVFNHTVEGNDKGPILSFRG--VDNSVY---YMLAP 370
+ + +FK L+ AH I+V++D NHT + P + G DN Y
Sbjct: 112 YGTMQDFKNLIDTAHAHNIKVIIDFAPNHTSPASSDDPSFAENGRLYDNGNLLGGYTNDT 171
Query: 371 KGEFYNYSGCGNT---------------FNCNHPVVRQFIVDCLRYWVTEMHVDGFRFDL 415
+ F++Y G + N N+ V ++ D ++ W+ ++ VDG R D
Sbjct: 172 QNLFHHYGGTDFSTIENGIYKNLYDLADLNHNNSSVDVYLKDAIKMWL-DLGVDGIRVDA 230
Query: 416 ASIMTRG--SSLWDSVNVY 432
M G S ++N Y
Sbjct: 231 VKNMPFGWQKSFMATINNY 249
>pdb|1UKS|A Chain A, Crystal Structure Of F183lF259L MUTANT CYCLODEXTRIN
Glucanotransferase Complexed With A Pseudo-Maltotetraose
Derived From Acarbose
pdb|1UKS|B Chain B, Crystal Structure Of F183lF259L MUTANT CYCLODEXTRIN
Glucanotransferase Complexed With A Pseudo-Maltotetraose
Derived From Acarbose
Length = 686
Score = 38.9 bits (89), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 44/199 (22%), Positives = 82/199 (41%), Gaps = 28/199 (14%)
Query: 261 GTYLGVVEKLD--HLKDLGINCLEL-MPCHEFNELEYFSYNSVLGDYNYSSAGIR--NCG 315
G + G++ K++ +L +GI + + P + +S + + Y + + N
Sbjct: 52 GDWQGIINKINDGYLTGMGITAIWISQPVENIYSVINYSGVNNTAYHGYWARDFKKTNPA 111
Query: 316 HDAINEFKLLVREAHKRGIEVVMDVVFNHTVEGNDKGPILSFRG--VDNSVY---YMLAP 370
+ + +FK L+ AH I+V++D NHT + P + G DN Y
Sbjct: 112 YGTMQDFKNLIDTAHAHNIKVIIDFAPNHTSPASSDDPSFAENGRLYDNGNLLGGYTNDT 171
Query: 371 KGEFYNYSGCGNT---------------FNCNHPVVRQFIVDCLRYWVTEMHVDGFRFDL 415
+ F++Y G + N N+ V ++ D ++ W+ ++ VDG R D
Sbjct: 172 QNLFHHYGGTDLSTIENGIYKNLYDLADLNHNNSSVDVYLKDAIKMWL-DLGVDGIRVDA 230
Query: 416 ASIMTRG--SSLWDSVNVY 432
M G S ++N Y
Sbjct: 231 VKHMPFGWQKSFMATINNY 249
>pdb|1PAM|A Chain A, Cyclodextrin Glucanotransferase
pdb|1PAM|B Chain B, Cyclodextrin Glucanotransferase
pdb|1I75|A Chain A, Crystal Structure Of Cyclodextrin Glucanotransferase From
Alkalophilic Bacillus Sp.#1011 Complexed With
1-Deoxynojirimycin
pdb|1I75|B Chain B, Crystal Structure Of Cyclodextrin Glucanotransferase From
Alkalophilic Bacillus Sp.#1011 Complexed With
1-Deoxynojirimycin
pdb|1UKQ|A Chain A, Crystal Structure Of Cyclodextrin Glucanotransferase
Complexed With A Pseudo-Maltotetraose Derived From
Acarbose
pdb|1UKQ|B Chain B, Crystal Structure Of Cyclodextrin Glucanotransferase
Complexed With A Pseudo-Maltotetraose Derived From
Acarbose
Length = 686
Score = 38.9 bits (89), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 44/199 (22%), Positives = 82/199 (41%), Gaps = 28/199 (14%)
Query: 261 GTYLGVVEKLD--HLKDLGINCLEL-MPCHEFNELEYFSYNSVLGDYNYSSAGIR--NCG 315
G + G++ K++ +L +GI + + P + +S + + Y + + N
Sbjct: 52 GDWQGIINKINDGYLTGMGITAIWISQPVENIYSVINYSGVNNTAYHGYWARDFKKTNPA 111
Query: 316 HDAINEFKLLVREAHKRGIEVVMDVVFNHTVEGNDKGPILSFRG--VDNSVY---YMLAP 370
+ + +FK L+ AH I+V++D NHT + P + G DN Y
Sbjct: 112 YGTMQDFKNLIDTAHAHNIKVIIDFAPNHTSPASSDDPSFAENGRLYDNGNLLGGYTNDT 171
Query: 371 KGEFYNYSGCGNT---------------FNCNHPVVRQFIVDCLRYWVTEMHVDGFRFDL 415
+ F++Y G + N N+ V ++ D ++ W+ ++ VDG R D
Sbjct: 172 QNLFHHYGGTDFSTIENGIYKNLYDLADLNHNNSSVDVYLKDAIKMWL-DLGVDGIRVDA 230
Query: 416 ASIMTRG--SSLWDSVNVY 432
M G S ++N Y
Sbjct: 231 VKHMPFGWQKSFMATINNY 249
>pdb|1V3J|A Chain A, Crystal Structure Of F283l Mutant Cyclodextrin
Glycosyltransferase
pdb|1V3J|B Chain B, Crystal Structure Of F283l Mutant Cyclodextrin
Glycosyltransferase
pdb|1V3L|A Chain A, Crystal Structure Of F283l Mutant Cyclodextrin
Glycosyltransferase Complexed With A Pseudo-tetraose
Derived From Acarbose
pdb|1V3L|B Chain B, Crystal Structure Of F283l Mutant Cyclodextrin
Glycosyltransferase Complexed With A Pseudo-tetraose
Derived From Acarbose
Length = 686
Score = 38.9 bits (89), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 44/199 (22%), Positives = 82/199 (41%), Gaps = 28/199 (14%)
Query: 261 GTYLGVVEKLD--HLKDLGINCLEL-MPCHEFNELEYFSYNSVLGDYNYSSAGIR--NCG 315
G + G++ K++ +L +GI + + P + +S + + Y + + N
Sbjct: 52 GDWQGIINKINDGYLTGMGITAIWISQPVENIYSVINYSGVNNTAYHGYWARDFKKTNPA 111
Query: 316 HDAINEFKLLVREAHKRGIEVVMDVVFNHTVEGNDKGPILSFRG--VDNSVY---YMLAP 370
+ + +FK L+ AH I+V++D NHT + P + G DN Y
Sbjct: 112 YGTMQDFKNLIDTAHAHNIKVIIDFAPNHTSPASSDDPSFAENGRLYDNGNLLGGYTNDT 171
Query: 371 KGEFYNYSGCGNT---------------FNCNHPVVRQFIVDCLRYWVTEMHVDGFRFDL 415
+ F++Y G + N N+ V ++ D ++ W+ ++ VDG R D
Sbjct: 172 QNLFHHYGGTDFSTIENGIYKNLYDLADLNHNNSSVDVYLKDAIKMWL-DLGVDGIRVDA 230
Query: 416 ASIMTRG--SSLWDSVNVY 432
M G S ++N Y
Sbjct: 231 VKHMPFGWQKSFMATINNY 249
>pdb|1CGV|A Chain A, Site Directed Mutations Of The Active Site Residue
Tyrosine 195 Of Cyclodextrin Glycosyltransferase From
Bacillus Circulans Strain 251 Affecting Activity And
Product Specificity
pdb|2DIJ|A Chain A, Complex Of A Y195f Mutant Cgtase From B. Circulans Strain
251 Complexed With A Maltononaose Inhibitor At Ph 9.8
Obtained After Soaking The Crystal With Acarbose And
Maltohexaose
Length = 686
Score = 38.5 bits (88), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 44/199 (22%), Positives = 83/199 (41%), Gaps = 28/199 (14%)
Query: 261 GTYLGVVEKLD--HLKDLGINCLEL-MPCHEFNELEYFSYNSVLGDYNYSSAGIR--NCG 315
G + G++ K++ +L +G+ + + P + +S + + Y + + N
Sbjct: 52 GDWQGIINKINDGYLTGMGVTAIWISQPVENIYSIINYSGVNNTAYHGYWARDFKKTNPA 111
Query: 316 HDAINEFKLLVREAHKRGIEVVMDVVFNHTVEGNDKGPILSFRG--VDNSVY---YMLAP 370
+ I +F+ L+ AH + I+V++D NHT + P + G DN Y
Sbjct: 112 YGTIADFQNLIAAAHAKNIKVIIDFAPNHTSPASSDQPSFAENGRLYDNGTLLGGYTNDT 171
Query: 371 KGEFYNYSGCG----------NTF-----NCNHPVVRQFIVDCLRYWVTEMHVDGFRFDL 415
+ F++ G N F N N+ V ++ D ++ W+ ++ +DG R D
Sbjct: 172 QNLFHHNGGTDFSTTENGIYKNLFDLADLNHNNSTVDVYLKDAIKMWL-DLGIDGIRMDA 230
Query: 416 ASIMTRG--SSLWDSVNVY 432
M G S +VN Y
Sbjct: 231 VKHMPFGWQKSFMAAVNNY 249
>pdb|1CGU|A Chain A, Catalytic Center Of Cyclodextrin Glycosyltransferase
Derived From X-Ray Structure Analysis Combined With
Site- Directed Mutagenesis
pdb|5CGT|A Chain A, Maltotriose Complex Of Preconditioned Cyclodextrin
Glycosyltransferase Mutant
pdb|7CGT|A Chain A, Rameb Complex Of Cyclodextrin Glycosyltransferase Mutant
Length = 684
Score = 38.5 bits (88), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 43/199 (21%), Positives = 76/199 (38%), Gaps = 50/199 (25%)
Query: 261 GTYLGVVEKLD--HLKDLGINCLELMPCHEFNELEYFSYNSVLGDYNYSSAGIRNCGH-- 316
G + G++ K++ + DLG+ L + E ++ NYS G+ N +
Sbjct: 52 GDWQGLINKINDNYFSDLGVTALWISQPVE----------NIFATINYS--GVTNTAYHG 99
Query: 317 -------------DAINEFKLLVREAHKRGIEVVMDVVFNHTVEGNDKGPILSFRG--VD 361
+ +F+ L+ AH +GI++V+D NHT + + G D
Sbjct: 100 YWARDFKKTNPYFGTMADFQNLITTAHAKGIKIVIDFAPNHTSPAMETDTSFAENGRLYD 159
Query: 362 NSVY---YMLAPKGEFYNYSGCGNT---------------FNCNHPVVRQFIVDCLRYWV 403
N Y G F++ G + FN N+ + ++ D ++ W+
Sbjct: 160 NGTLVGGYTNDTNGYFHHNGGSDFSSLENGIYKNLYDLADFNHNNATIDKYFKDAIKLWL 219
Query: 404 TEMHVDGFRFDLASIMTRG 422
+M VDG R M G
Sbjct: 220 -DMGVDGIRVAAVKHMPLG 237
>pdb|1CGY|A Chain A, Site Directed Mutations Of The Active Site Residue
Tyrosine 195 Of Cyclodextrin Glyxosyltransferase From
Bacillus Circulans Strain 251 Affecting Activity And
Product Specificity
Length = 686
Score = 38.1 bits (87), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 42/199 (21%), Positives = 82/199 (41%), Gaps = 28/199 (14%)
Query: 261 GTYLGVVEKLD--HLKDLGINCLEL-MPCHEFNELEYFSYNSVLGDYNYSSAGIR--NCG 315
G + G++ K++ +L +G+ + + P + +S + + Y + + N
Sbjct: 52 GDWQGIINKINDGYLTGMGVTAIWISQPVENIYSIINYSGVNNTAYHGYWARDFKKTNPA 111
Query: 316 HDAINEFKLLVREAHKRGIEVVMDVVFNHTVEGNDKGPILSFRG--VDNSVY---YMLAP 370
+ I +F+ L+ AH + I+V++D NHT + P + G DN Y
Sbjct: 112 YGTIADFQNLIAAAHAKNIKVIIDFAPNHTSPASSDQPSFAENGRLYDNGTLLGGYTNDT 171
Query: 371 KGEFYNYSGCGNT---------------FNCNHPVVRQFIVDCLRYWVTEMHVDGFRFDL 415
+ F++ G + N N+ V ++ D ++ W+ ++ +DG R D
Sbjct: 172 QNLFHHNGGTDFSTTENGIYKNLWDLADLNHNNSTVDVYLKDAIKMWL-DLGIDGIRMDA 230
Query: 416 ASIMTRG--SSLWDSVNVY 432
M G S +VN Y
Sbjct: 231 VKHMPFGWQKSFMAAVNNY 249
>pdb|3BMV|A Chain A, Cyclodextrin Glycosyl Transferase From
Thermoanerobacterium Thermosulfurigenes Em1 Mutant S77p
pdb|3BMW|A Chain A, Cyclodextrin Glycosyl Transferase From
Thermoanerobacterium Thermosulfurigenes Em1 Mutant S77p
Complexed With A Maltoheptaose Inhibitor
Length = 683
Score = 38.1 bits (87), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 44/198 (22%), Positives = 78/198 (39%), Gaps = 29/198 (14%)
Query: 252 HESSKTEHPGTYLGVVEKLD--HLKDLGINCLELMPCHEFNELEYFSYNSVLGDYNYSSA 309
H S K G + G++ K++ +L +G+ + +P N ++ G +Y
Sbjct: 43 HTSLKKYFGGDWQGIINKINDGYLTGMGVTAI-WIPQPVENIYAVLPDSTFGGSTSYHGY 101
Query: 310 GIR-----NCGHDAINEFKLLVREAHKRGIEVVMDVVFNHTVEGNDKGPILSFRG--VDN 362
R N + +F+ L+ AH I+V++D NHT ++ P + G DN
Sbjct: 102 WARDFKRTNPYFGSFTDFQNLINTAHAHNIKVIIDFAPNHTSPASETDPTYAENGRLYDN 161
Query: 363 SVY---YMLAPKGEFYNYSGCG----------NTF-----NCNHPVVRQFIVDCLRYWVT 404
Y G F++Y G N F N + + ++ ++ W+
Sbjct: 162 GTLLGGYTNDTNGYFHHYGGTDFSSYEDGIYRNLFDLADLNQQNSTIDSYLKSAIKVWL- 220
Query: 405 EMHVDGFRFDLASIMTRG 422
+M +DG R D M G
Sbjct: 221 DMGIDGIRLDAVKHMPFG 238
>pdb|1A47|A Chain A, Cgtase From Thermoanaerobacterium Thermosulfurigenes Em1
In Complex With A Maltohexaose Inhibitor
pdb|1CIU|A Chain A, Thermostable Cgtase From Thermoanaerobacterium
Thermosulfurigenes Em1 At Ph 8.0
Length = 683
Score = 38.1 bits (87), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 44/198 (22%), Positives = 78/198 (39%), Gaps = 29/198 (14%)
Query: 252 HESSKTEHPGTYLGVVEKLD--HLKDLGINCLELMPCHEFNELEYFSYNSVLGDYNYSSA 309
H S K G + G++ K++ +L +G+ + + E N ++ G +Y
Sbjct: 43 HTSLKKYFGGDWQGIINKINDGYLTGMGVTAIWISQPVE-NIYAVLPDSTFGGSTSYHGY 101
Query: 310 GIR-----NCGHDAINEFKLLVREAHKRGIEVVMDVVFNHTVEGNDKGPILSFRG--VDN 362
R N + +F+ L+ AH I+V++D NHT ++ P + G DN
Sbjct: 102 WARDFKRTNPYFGSFTDFQNLINTAHAHNIKVIIDFAPNHTSPASETDPTYAENGRLYDN 161
Query: 363 SVY---YMLAPKGEFYNYSGCG----------NTF-----NCNHPVVRQFIVDCLRYWVT 404
Y G F++Y G N F N + + ++ ++ W+
Sbjct: 162 GTLLGGYTNDTNGYFHHYGGTDFSSYEDGIYRNLFDLADLNQQNSTIDSYLKSAIKVWL- 220
Query: 405 EMHVDGFRFDLASIMTRG 422
+M +DG R D M G
Sbjct: 221 DMGIDGIRLDAVKHMPFG 238
>pdb|1CXL|A Chain A, Complex Between A Covalent Intermediate And Bacillus
Circulans Strain 251 Cgtase E257q
Length = 686
Score = 38.1 bits (87), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 42/199 (21%), Positives = 82/199 (41%), Gaps = 28/199 (14%)
Query: 261 GTYLGVVEKLD--HLKDLGINCLEL-MPCHEFNELEYFSYNSVLGDYNYSSAGIR--NCG 315
G + G++ K++ +L +G+ + + P + +S + + Y + + N
Sbjct: 52 GDWQGIINKINDGYLTGMGVTAIWISQPVENIYSIINYSGVNNTAYHGYWARDFKKTNPA 111
Query: 316 HDAINEFKLLVREAHKRGIEVVMDVVFNHTVEGNDKGPILSFRG--VDNSVY---YMLAP 370
+ I +F+ L+ AH + I+V++D NHT + P + G DN Y
Sbjct: 112 YGTIADFQNLIAAAHAKNIKVIIDFAPNHTSPASSDQPSFAENGRLYDNGTLLGGYTNDT 171
Query: 371 KGEFYNYSGCGNT---------------FNCNHPVVRQFIVDCLRYWVTEMHVDGFRFDL 415
+ F++ G + N N+ V ++ D ++ W+ ++ +DG R D
Sbjct: 172 QNLFHHNGGTDFSTTENGIYKNLYDLADLNHNNSTVDVYLKDAIKMWL-DLGIDGIRMDA 230
Query: 416 ASIMTRG--SSLWDSVNVY 432
M G S +VN Y
Sbjct: 231 VKHMPFGWQKSFMAAVNNY 249
>pdb|1TCM|A Chain A, Cyclodextrin Glycosyltransferase W616a Mutant From
Bacillus Circulans Strain 251
pdb|1TCM|B Chain B, Cyclodextrin Glycosyltransferase W616a Mutant From
Bacillus Circulans Strain 251
Length = 686
Score = 38.1 bits (87), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 42/199 (21%), Positives = 82/199 (41%), Gaps = 28/199 (14%)
Query: 261 GTYLGVVEKLD--HLKDLGINCLEL-MPCHEFNELEYFSYNSVLGDYNYSSAGIR--NCG 315
G + G++ K++ +L +G+ + + P + +S + + Y + + N
Sbjct: 52 GDWQGIINKINDGYLTGMGVTAIWISQPVENIYSIINYSGVNNTAYHGYWARDFKKTNPA 111
Query: 316 HDAINEFKLLVREAHKRGIEVVMDVVFNHTVEGNDKGPILSFRG--VDNSVY---YMLAP 370
+ I +F+ L+ AH + I+V++D NHT + P + G DN Y
Sbjct: 112 YGTIADFQNLIAAAHAKNIKVIIDFAPNHTSPASSDQPSFAENGRLYDNGTLLGGYTNDT 171
Query: 371 KGEFYNYSGCGNT---------------FNCNHPVVRQFIVDCLRYWVTEMHVDGFRFDL 415
+ F++ G + N N+ V ++ D ++ W+ ++ +DG R D
Sbjct: 172 QNLFHHNGGTDFSTTENGIYKNLYDLADLNHNNSTVDVYLKDAIKMWL-DLGIDGIRMDA 230
Query: 416 ASIMTRG--SSLWDSVNVY 432
M G S +VN Y
Sbjct: 231 VKHMPFGWQKSFMAAVNNY 249
>pdb|1CDG|A Chain A, Nucleotide Sequence And X-Ray Structure Of Cyclodextrin
Glycosyltransferase From Bacillus Circulans Strain 251
In A Maltose-Dependent Crystal Form
pdb|1CXE|A Chain A, Complex Of Cgtase With Maltotetraose At Room Temperature
And Ph 9.1 Based On Diffraction Data Of A Crystal Soaked
With Alpha-Cyclodextrin
pdb|1CXH|A Chain A, Complex Of Cgtase With Maltotetraose At Room Temperature
And Ph 9.6 Based On Diffraction Data Of A Crystal Soaked
With Maltoheptaose
pdb|1CXI|A Chain A, Wild-Type Cgtase From Bacillus Circulans Strain 251 At 120
K And Ph 7.55
pdb|2CXG|A Chain A, Cyclodextrin Glycosyltransferase Complexed To The
Inhibitor Acarbose
Length = 686
Score = 38.1 bits (87), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 42/199 (21%), Positives = 82/199 (41%), Gaps = 28/199 (14%)
Query: 261 GTYLGVVEKLD--HLKDLGINCLEL-MPCHEFNELEYFSYNSVLGDYNYSSAGIR--NCG 315
G + G++ K++ +L +G+ + + P + +S + + Y + + N
Sbjct: 52 GDWQGIINKINDGYLTGMGVTAIWISQPVENIYSIINYSGVNNTAYHGYWARDFKKTNPA 111
Query: 316 HDAINEFKLLVREAHKRGIEVVMDVVFNHTVEGNDKGPILSFRG--VDNSVY---YMLAP 370
+ I +F+ L+ AH + I+V++D NHT + P + G DN Y
Sbjct: 112 YGTIADFQNLIAAAHAKNIKVIIDFAPNHTSPASSDQPSFAENGRLYDNGTLLGGYTNDT 171
Query: 371 KGEFYNYSGCGNT---------------FNCNHPVVRQFIVDCLRYWVTEMHVDGFRFDL 415
+ F++ G + N N+ V ++ D ++ W+ ++ +DG R D
Sbjct: 172 QNLFHHNGGTDFSTTENGIYKNLYDLADLNHNNSTVDVYLKDAIKMWL-DLGIDGIRMDA 230
Query: 416 ASIMTRG--SSLWDSVNVY 432
M G S +VN Y
Sbjct: 231 VKHMPFGWQKSFMAAVNNY 249
>pdb|1CGX|A Chain A, Site Directed Mutations Of The Active Site Residue
Tyrosine 195 Of Cyclodextrin Glyxosyltransferase From
Bacillus Circulans Strain 251 Affecting Activity And
Product Specificity
Length = 686
Score = 38.1 bits (87), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 42/199 (21%), Positives = 82/199 (41%), Gaps = 28/199 (14%)
Query: 261 GTYLGVVEKLD--HLKDLGINCLEL-MPCHEFNELEYFSYNSVLGDYNYSSAGIR--NCG 315
G + G++ K++ +L +G+ + + P + +S + + Y + + N
Sbjct: 52 GDWQGIINKINDGYLTGMGVTAIWISQPVENIYSIINYSGVNNTAYHGYWARDFKKTNPA 111
Query: 316 HDAINEFKLLVREAHKRGIEVVMDVVFNHTVEGNDKGPILSFRG--VDNSVY---YMLAP 370
+ I +F+ L+ AH + I+V++D NHT + P + G DN Y
Sbjct: 112 YGTIADFQNLIAAAHAKNIKVIIDFAPNHTSPASSDQPSFAENGRLYDNGTLLGGYTNDT 171
Query: 371 KGEFYNYSGCGNT---------------FNCNHPVVRQFIVDCLRYWVTEMHVDGFRFDL 415
+ F++ G + N N+ V ++ D ++ W+ ++ +DG R D
Sbjct: 172 QNLFHHNGGTDFSTTENGIYKNLLDLADLNHNNSTVDVYLKDAIKMWL-DLGIDGIRMDA 230
Query: 416 ASIMTRG--SSLWDSVNVY 432
M G S +VN Y
Sbjct: 231 VKHMPFGWQKSFMAAVNNY 249
>pdb|1PJ9|A Chain A, Bacillus Circulans Strain 251 Loop Mutant 183-195
Length = 686
Score = 38.1 bits (87), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 42/199 (21%), Positives = 82/199 (41%), Gaps = 28/199 (14%)
Query: 261 GTYLGVVEKLD--HLKDLGINCLEL-MPCHEFNELEYFSYNSVLGDYNYSSAGIR--NCG 315
G + G++ K++ +L +G+ + + P + +S + + Y + + N
Sbjct: 52 GDWQGIINKINDGYLTGMGVTAIWISQPVENIYSIINYSGVNNTAYHGYWARDFKKTNPA 111
Query: 316 HDAINEFKLLVREAHKRGIEVVMDVVFNHTVEGNDKGPILSFRG--VDNSVY---YMLAP 370
+ I +F+ L+ AH + I+V++D NHT + P + G DN Y
Sbjct: 112 YGTIADFQNLIAAAHAKNIKVIIDFAPNHTSPASSDQPSFAENGRLYDNGTLLGGYTNDT 171
Query: 371 KGEFYNYSGCGNT---------------FNCNHPVVRQFIVDCLRYWVTEMHVDGFRFDL 415
+ F++ G + N N+ V ++ D ++ W+ ++ +DG R D
Sbjct: 172 QNLFHHNGGTDFSSYEDGIYRNLYDLADLNHNNSTVDVYLKDAIKMWL-DLGIDGIRMDA 230
Query: 416 ASIMTRG--SSLWDSVNVY 432
M G S +VN Y
Sbjct: 231 VKHMPFGWQKSFMAAVNNY 249
>pdb|1KCK|A Chain A, Bacillus Circulans Strain 251 Cyclodextrin Glycosyl
Transferase Mutant N193g
Length = 686
Score = 38.1 bits (87), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 42/199 (21%), Positives = 82/199 (41%), Gaps = 28/199 (14%)
Query: 261 GTYLGVVEKLD--HLKDLGINCLEL-MPCHEFNELEYFSYNSVLGDYNYSSAGIR--NCG 315
G + G++ K++ +L +G+ + + P + +S + + Y + + N
Sbjct: 52 GDWQGIINKINDGYLTGMGVTAIWISQPVENIYSIINYSGVNNTAYHGYWARDFKKTNPA 111
Query: 316 HDAINEFKLLVREAHKRGIEVVMDVVFNHTVEGNDKGPILSFRG--VDNSVY---YMLAP 370
+ I +F+ L+ AH + I+V++D NHT + P + G DN Y
Sbjct: 112 YGTIADFQNLIAAAHAKNIKVIIDFAPNHTSPASSDQPSFAENGRLYDNGTLLGGYTNDT 171
Query: 371 KGEFYNYSGCGNT---------------FNCNHPVVRQFIVDCLRYWVTEMHVDGFRFDL 415
+ F++ G + N N+ V ++ D ++ W+ ++ +DG R D
Sbjct: 172 QNLFHHNGGTDFSTTENGIYKGLYDLADLNHNNSTVDVYLKDAIKMWL-DLGIDGIRMDA 230
Query: 416 ASIMTRG--SSLWDSVNVY 432
M G S +VN Y
Sbjct: 231 VKHMPFGWQKSFMAAVNNY 249
>pdb|1UKT|A Chain A, Crystal Structure Of Y100l Mutant Cyclodextrin
Glucanotransferase Compexed With An Acarbose
pdb|1UKT|B Chain B, Crystal Structure Of Y100l Mutant Cyclodextrin
Glucanotransferase Compexed With An Acarbose
Length = 686
Score = 38.1 bits (87), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 47/201 (23%), Positives = 82/201 (40%), Gaps = 32/201 (15%)
Query: 261 GTYLGVVEKLD--HLKDLGINCLELMPCHEFNELEYFSYNSVLGDYNYSSAGIR-----N 313
G + G++ K++ +L +GI + + E N +Y+ V + Y R N
Sbjct: 52 GDWQGIINKINDGYLTGMGITAIWISQPVE-NIYSVINYSGV-NNTAYHGLWARDFKKTN 109
Query: 314 CGHDAINEFKLLVREAHKRGIEVVMDVVFNHTVEGNDKGPILSFRG--VDNSVY---YML 368
+ + +FK L+ AH I+V++D NHT + P + G DN Y
Sbjct: 110 PAYGTMQDFKNLIDTAHAHNIKVIIDFAPNHTSPASSDDPSFAENGRLYDNGNLLGGYTN 169
Query: 369 APKGEFYNYSGCGNT---------------FNCNHPVVRQFIVDCLRYWVTEMHVDGFRF 413
+ F++Y G + N N+ V ++ D ++ W+ ++ VDG R
Sbjct: 170 DTQNLFHHYGGTDFSTIENGIYKNLYDLADLNHNNSSVDVYLKDAIKMWL-DLGVDGIRV 228
Query: 414 DLASIMTRG--SSLWDSVNVY 432
D M G S ++N Y
Sbjct: 229 DAVKHMPFGWQKSFMATINNY 249
>pdb|2DH2|A Chain A, Crystal Structure Of Human Ed-4f2hc
Length = 424
Score = 38.1 bits (87), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 49/222 (22%), Positives = 84/222 (37%), Gaps = 52/222 (23%)
Query: 226 WEGDLPLKYPQRDLIIYEV-HVRGFTRHESSKTEHPGTYLGVVEKLDHLKDLGINCLELM 284
W +LP + +Y + ++ F H + G G+ +LD+L L + L L
Sbjct: 3 WGSELPAQKWWHTGALYRIGDLQAFQGHGA------GNLAGLKGRLDYLSSLKVKGLVLG 56
Query: 285 PCHEFNELEYFSYNSVLGDYNYSSAGIRNCGHDAINEFKLLVREAHKRGIEVVMDVVFNH 344
P H+ + + + + D N+ S +F L++ A K+ I V++D
Sbjct: 57 PIHKNQKDDVAQTDLLQIDPNFGSK----------EDFDSLLQSAKKKSIRVILD----- 101
Query: 345 TVEGNDKGPILSFRGVDNSVYYMLAPKGEFYNYSGCGNTFNCNHPVVRQFIVDCLRYWVT 404
L P NY G + F+ V + D L +W+
Sbjct: 102 -----------------------LTP-----NYRGENSWFSTQVDTVATKVKDALEFWL- 132
Query: 405 EMHVDGFRF-DLASIMTRGSSLWDSVNVYGIPIEGDLLTTGT 445
+ VDGF+ D+ ++ S L + N+ E LL GT
Sbjct: 133 QAGVDGFQVRDIENLKDASSFLAEWQNITKGFSEDRLLIAGT 174
>pdb|1KCL|A Chain A, Bacillus Ciruclans Strain 251 Cyclodextrin Glycosyl
Transferase Mutant G179l
Length = 686
Score = 37.4 bits (85), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 41/200 (20%), Positives = 80/200 (40%), Gaps = 30/200 (15%)
Query: 261 GTYLGVVEKLD--HLKDLGINCLEL-MPCHEFNELEYFSYNSVLGDYNYSSAGIR--NCG 315
G + G++ K++ +L +G+ + + P + +S + + Y + + N
Sbjct: 52 GDWQGIINKINDGYLTGMGVTAIWISQPVENIYSIINYSGVNNTAYHGYWARDFKKTNPA 111
Query: 316 HDAINEFKLLVREAHKRGIEVVMDVVFNHTVEGNDKGPILSFRG--VDNSVY-------- 365
+ I +F+ L+ AH + I+V++D NHT + P + G DN
Sbjct: 112 YGTIADFQNLIAAAHAKNIKVIIDFAPNHTSPASSDQPSFAENGRLYDNGTLLGGYTNDT 171
Query: 366 -----------YMLAPKGEFYNYSGCGNTFNCNHPVVRQFIVDCLRYWVTEMHVDGFRFD 414
+ G + N + N N+ V ++ D ++ W+ ++ +DG R D
Sbjct: 172 QNLFHHNLGTDFSTTENGIYKNLYDLAD-LNHNNSTVDVYLKDAIKMWL-DLGIDGIRMD 229
Query: 415 LASIMTRG--SSLWDSVNVY 432
M G S +VN Y
Sbjct: 230 AVKHMPFGWQKSFMAAVNNY 249
>pdb|2DH3|A Chain A, Crystal Structure Of Human Ed-4f2hc
pdb|2DH3|B Chain B, Crystal Structure Of Human Ed-4f2hc
Length = 424
Score = 37.4 bits (85), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 49/222 (22%), Positives = 84/222 (37%), Gaps = 52/222 (23%)
Query: 226 WEGDLPLKYPQRDLIIYEV-HVRGFTRHESSKTEHPGTYLGVVEKLDHLKDLGINCLELM 284
W +LP + +Y + ++ F H + G G+ +LD+L L + L L
Sbjct: 3 WGSELPAQKWWHTGALYRIGDLQAFQGHGA------GNLAGLKGRLDYLSSLKVKGLVLG 56
Query: 285 PCHEFNELEYFSYNSVLGDYNYSSAGIRNCGHDAINEFKLLVREAHKRGIEVVMDVVFNH 344
P H+ + + + + D N+ S +F L++ A K+ I V++D
Sbjct: 57 PIHKNQKDDVAQTDLLQIDPNFGSK----------EDFDSLLQSAKKKSIRVILD----- 101
Query: 345 TVEGNDKGPILSFRGVDNSVYYMLAPKGEFYNYSGCGNTFNCNHPVVRQFIVDCLRYWVT 404
L P NY G + F+ V + D L +W+
Sbjct: 102 -----------------------LTP-----NYRGENSWFSTQVDTVATKVKDALEFWL- 132
Query: 405 EMHVDGFRF-DLASIMTRGSSLWDSVNVYGIPIEGDLLTTGT 445
+ VDGF+ D+ ++ S L + N+ E LL GT
Sbjct: 133 QAGVDGFQVRDIENLKDASSFLAEWQNITKGFSEDRLLIAGT 174
>pdb|1HVX|A Chain A, Bacillus Stearothermophilus Alpha-Amylase
Length = 515
Score = 37.4 bits (85), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 38/83 (45%), Gaps = 6/83 (7%)
Query: 266 VVEKLDHLKDLGINCLELMPCHEFNELEYFSYNSV----LGDYNYSSAGIRNCGHDAINE 321
V + ++L LGI L L P ++ Y LG++N A G A +
Sbjct: 26 VANEANNLSSLGITALWLPPAYKGTSRSDVGYGVYDLYDLGEFNQKGAVRTKYGTKA--Q 83
Query: 322 FKLLVREAHKRGIEVVMDVVFNH 344
+ ++ AH G++V DVVF+H
Sbjct: 84 YLQAIQAAHAAGMQVYADVVFDH 106
>pdb|1CXK|A Chain A, Complex Between A Maltononaose Substrate And Bacillus
Circulans Strain 251 Cgtase E257qD229N
pdb|1D3C|A Chain A, Michaelis Complex Of Bacillus Circulans Strain 251
Cyclodextrin Glycosyltransferase With Gamma-Cyclodextrin
pdb|1CXF|A Chain A, Complex Of A (D229nE257Q) DOUBLE MUTANT CGTASE FROM
Bacillus Circulans Strain 251 With Maltotetraose At 120
K And Ph 9.1 Obtained After Soaking The Crystal With
Alpha- Cyclodextrin
Length = 686
Score = 36.2 bits (82), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 41/199 (20%), Positives = 82/199 (41%), Gaps = 28/199 (14%)
Query: 261 GTYLGVVEKLD--HLKDLGINCLEL-MPCHEFNELEYFSYNSVLGDYNYSSAGIR--NCG 315
G + G++ K++ +L +G+ + + P + +S + + Y + + N
Sbjct: 52 GDWQGIINKINDGYLTGMGVTAIWISQPVENIYSIINYSGVNNTAYHGYWARDFKKTNPA 111
Query: 316 HDAINEFKLLVREAHKRGIEVVMDVVFNHTVEGNDKGPILSFRG--VDNSVY---YMLAP 370
+ I +F+ L+ AH + I+V++D NHT + P + G DN Y
Sbjct: 112 YGTIADFQNLIAAAHAKNIKVIIDFAPNHTSPASSDQPSFAENGRLYDNGTLLGGYTNDT 171
Query: 371 KGEFYNYSGCGNT---------------FNCNHPVVRQFIVDCLRYWVTEMHVDGFRFDL 415
+ F++ G + N N+ V ++ D ++ W+ ++ +DG R +
Sbjct: 172 QNLFHHNGGTDFSTTENGIYKNLYDLADLNHNNSTVDVYLKDAIKMWL-DLGIDGIRMNA 230
Query: 416 ASIMTRG--SSLWDSVNVY 432
M G S +VN Y
Sbjct: 231 VKHMPFGWQKSFMAAVNNY 249
>pdb|1OT2|A Chain A, Bacillus Circulans Strain 251 Cyclodextrin Glycosyl
Transferase Mutant D135n
Length = 686
Score = 36.2 bits (82), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 41/199 (20%), Positives = 82/199 (41%), Gaps = 28/199 (14%)
Query: 261 GTYLGVVEKLD--HLKDLGINCLEL-MPCHEFNELEYFSYNSVLGDYNYSSAGIR--NCG 315
G + G++ K++ +L +G+ + + P + +S + + Y + + N
Sbjct: 52 GDWQGIINKINDGYLTGMGVTAIWISQPVENIYSIINYSGVNNTAYHGYWARDFKKTNPA 111
Query: 316 HDAINEFKLLVREAHKRGIEVVMDVVFNHTVEGNDKGPILSFRG--VDNSVY---YMLAP 370
+ I +F+ L+ AH + I+V+++ NHT + P + G DN Y
Sbjct: 112 YGTIADFQNLIAAAHAKNIKVIINFAPNHTSPASSDQPSFAENGRLYDNGTLLGGYTNDT 171
Query: 371 KGEFYNYSGCGNT---------------FNCNHPVVRQFIVDCLRYWVTEMHVDGFRFDL 415
+ F++ G + N N+ V ++ D ++ W+ ++ +DG R D
Sbjct: 172 QNLFHHNGGTDFSTTENGIYKNLYDLADLNHNNSTVDVYLKDAIKMWL-DLGIDGIRMDA 230
Query: 416 ASIMTRG--SSLWDSVNVY 432
M G S +VN Y
Sbjct: 231 VKHMPFGWQKSFMAAVNNY 249
>pdb|1DTU|A Chain A, Bacillus Circulans Strain 251 Cyclodextrin
Glycosyltransferase: A Mutant Y89dS146P COMPLEXED TO AN
Hexasaccharide Inhibitor
Length = 686
Score = 36.2 bits (82), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 34/142 (23%), Positives = 58/142 (40%), Gaps = 23/142 (16%)
Query: 313 NCGHDAINEFKLLVREAHKRGIEVVMDVVFNHTVEGNDKGPILSFRG--VDNSVY---YM 367
N + I +F+ L+ AH + I+V++D NHT + P + G DN Y
Sbjct: 109 NPAYGTIADFQNLIAAAHAKNIKVIIDFAPNHTSPASPDQPSFAENGRLYDNGTLLGGYT 168
Query: 368 LAPKGEFYNYSGCGNT---------------FNCNHPVVRQFIVDCLRYWVTEMHVDGFR 412
+ F++ G + N N+ V ++ D ++ W+ ++ +DG R
Sbjct: 169 NDTQNLFHHNGGTDFSTTENGIYKNLYDLADLNHNNSTVDVYLKDAIKMWL-DLGIDGIR 227
Query: 413 FDLASIMTRG--SSLWDSVNVY 432
D M G S +VN Y
Sbjct: 228 MDAVKHMPFGWQKSFMAAVNNY 249
>pdb|3ZSS|A Chain A, Apo Form Of Glge Isoform 1 From Streptomyces Coelicolor
pdb|3ZSS|B Chain B, Apo Form Of Glge Isoform 1 From Streptomyces Coelicolor
pdb|3ZSS|C Chain C, Apo Form Of Glge Isoform 1 From Streptomyces Coelicolor
pdb|3ZSS|D Chain D, Apo Form Of Glge Isoform 1 From Streptomyces Coelicolor
pdb|3ZST|A Chain A, Glge Isoform 1 From Streptomyces Coelicolor With
Alpha-Cyclodextrin Bound
pdb|3ZST|B Chain B, Glge Isoform 1 From Streptomyces Coelicolor With
Alpha-Cyclodextrin Bound
pdb|3ZT5|A Chain A, Glge Isoform 1 From Streptomyces Coelicolor With Maltose
Bound
pdb|3ZT5|B Chain B, Glge Isoform 1 From Streptomyces Coelicolor With Maltose
Bound
pdb|3ZT5|C Chain C, Glge Isoform 1 From Streptomyces Coelicolor With Maltose
Bound
pdb|3ZT5|D Chain D, Glge Isoform 1 From Streptomyces Coelicolor With Maltose
Bound
pdb|3ZT6|A Chain A, Glge Isoform 1 From Streptomyces Coelicolor With Alpha-
Cyclodextrin And Maltose Bound
pdb|3ZT6|B Chain B, Glge Isoform 1 From Streptomyces Coelicolor With Alpha-
Cyclodextrin And Maltose Bound
pdb|3ZT6|C Chain C, Glge Isoform 1 From Streptomyces Coelicolor With Alpha-
Cyclodextrin And Maltose Bound
pdb|3ZT6|D Chain D, Glge Isoform 1 From Streptomyces Coelicolor With Alpha-
Cyclodextrin And Maltose Bound
pdb|3ZT7|A Chain A, Glge Isoform 1 From Streptomyces Coelicolor With
Beta-Cyclodextrin And Maltose Bound
pdb|3ZT7|B Chain B, Glge Isoform 1 From Streptomyces Coelicolor With
Beta-Cyclodextrin And Maltose Bound
pdb|3ZT7|C Chain C, Glge Isoform 1 From Streptomyces Coelicolor With
Beta-Cyclodextrin And Maltose Bound
pdb|3ZT7|D Chain D, Glge Isoform 1 From Streptomyces Coelicolor With
Beta-Cyclodextrin And Maltose Bound
Length = 695
Score = 35.8 bits (81), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 48/214 (22%), Positives = 83/214 (38%), Gaps = 20/214 (9%)
Query: 230 LPLKYPQRDLIIYEVHVRGFTRHESSKTEHPGTYLGVVEKLDHLKDLGINCLELMPCHEF 289
LPL +R+ +Y F R E + GT+ +L + +G + + L P H
Sbjct: 220 LPLLV-ERERALYGAWYEFFPRSEGTPHTPHGTFRTAARRLPAIAAMGFDVVYLPPIHPI 278
Query: 290 NELEYFSYNSVLG----DYNYSSA-GIRNCGHDAI-------NEFKLLVREAHKRGIEVV 337
N+ L D A G GHD+I ++F V EA K G+E+
Sbjct: 279 GTTHRKGRNNTLSATGDDVGVPWAIGSPEGGHDSIHPALGTLDDFDHFVTEAGKLGLEIA 338
Query: 338 MDVVFNHTVEGN--DKGPILSFRGVDNSVYYMLAPKGEFYNYSGCGNTFNCNHPVVRQFI 395
+D + + K P D ++ + P ++ + F+ + +
Sbjct: 339 LDFALQCSPDHPWVHKHPEWFHHRPDGTIAHAENPPKKYQDIYPIA--FDADPDGLATET 396
Query: 396 VDCLRYWVTEMHVDGFRFDLASIMTRGSSLWDSV 429
V LR+W+ + V FR D + T+ + W+ V
Sbjct: 397 VRILRHWM-DHGVRIFRVD--NPHTKPVAFWERV 427
>pdb|3AXH|A Chain A, Crystal Structure Of Isomaltase In Complex With Isomaltose
pdb|3AXI|A Chain A, Crystal Structure Of Isomaltase In Complex With Maltose
Length = 589
Score = 35.4 bits (80), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 47/228 (20%), Positives = 86/228 (37%), Gaps = 50/228 (21%)
Query: 237 RDLIIYEVHVRGFTRHESSKTEHPGTYLGVVEKLDHLKDLGINCLELMPCHEFNELEYFS 296
++ Y+++ F + S + G G+ KL+++K+LG + + + P
Sbjct: 16 KEATFYQIYPASF---KDSNDDGWGDMKGIASKLEYIKELGADAIWISPF---------- 62
Query: 297 YNSVLGDYNYSSAGIRNC--GHDAINEFKLLVREAHKRGIEVVMDVVFNHTVEGND--KG 352
Y+S D Y A + + L+ + HK G++ + D+V NH ++ K
Sbjct: 63 YDSPQDDMGYDIANYEKVWPTYGTNEDCFALIEKTHKLGMKFITDLVINHCSSEHEWFKE 122
Query: 353 PILSFRGVDNSVYYMLAPKG-----------------------------EFYNYSGCGNT 383
S ++ PKG EFY C
Sbjct: 123 SRSSKTNPKRDWFFWRPPKGYDAEGKPIPPNNWKSYFGGSAWTFDEKTQEFYLRLFCSTQ 182
Query: 384 --FNCNHPVVRQFIVD-CLRYWVTEMHVDGFRFDLASIMTRGSSLWDS 428
N + R+ I + + YW+ + VDGFR D+ S+ ++ L D+
Sbjct: 183 PDLNWENEDCRKAIYESAVGYWL-DHGVDGFRIDVGSLYSKVVGLPDA 229
>pdb|3A47|A Chain A, Crystal Structure Of Isomaltase From Saccharomyces
Cerevisiae
pdb|3A4A|A Chain A, Crystal Structure Of Isomaltase From Saccharomyces
Cerevisiae
pdb|3AJ7|A Chain A, Crystal Structure Of Isomaltase From Saccharomyces
Cerevisiae
Length = 589
Score = 35.4 bits (80), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 47/228 (20%), Positives = 86/228 (37%), Gaps = 50/228 (21%)
Query: 237 RDLIIYEVHVRGFTRHESSKTEHPGTYLGVVEKLDHLKDLGINCLELMPCHEFNELEYFS 296
++ Y+++ F + S + G G+ KL+++K+LG + + + P
Sbjct: 16 KEATFYQIYPASF---KDSNDDGWGDMKGIASKLEYIKELGADAIWISPF---------- 62
Query: 297 YNSVLGDYNYSSAGIRNC--GHDAINEFKLLVREAHKRGIEVVMDVVFNHTVEGND--KG 352
Y+S D Y A + + L+ + HK G++ + D+V NH ++ K
Sbjct: 63 YDSPQDDMGYDIANYEKVWPTYGTNEDCFALIEKTHKLGMKFITDLVINHCSSEHEWFKE 122
Query: 353 PILSFRGVDNSVYYMLAPKG-----------------------------EFYNYSGCGNT 383
S ++ PKG EFY C
Sbjct: 123 SRSSKTNPKRDWFFWRPPKGYDAEGKPIPPNNWKSYFGGSAWTFDEKTQEFYLRLFCSTQ 182
Query: 384 --FNCNHPVVRQFIVD-CLRYWVTEMHVDGFRFDLASIMTRGSSLWDS 428
N + R+ I + + YW+ + VDGFR D+ S+ ++ L D+
Sbjct: 183 PDLNWENEDCRKAIYESAVGYWL-DHGVDGFRIDVGSLYSKVVGLPDA 229
>pdb|1OT1|A Chain A, Bacillus Circulans Strain 251 Cyclodextrin Glycosyl
Transferase Mutant D135a
Length = 686
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 41/199 (20%), Positives = 81/199 (40%), Gaps = 28/199 (14%)
Query: 261 GTYLGVVEKLD--HLKDLGINCLEL-MPCHEFNELEYFSYNSVLGDYNYSSAGIR--NCG 315
G + G++ K++ +L +G+ + + P + +S + + Y + + N
Sbjct: 52 GDWQGIINKINDGYLTGMGVTAIWISQPVENIYSIINYSGVNNTAYHGYWARDFKKTNPA 111
Query: 316 HDAINEFKLLVREAHKRGIEVVMDVVFNHTVEGNDKGPILSFRG--VDNSVY---YMLAP 370
+ I +F+ L+ AH + I+V++ NHT + P + G DN Y
Sbjct: 112 YGTIADFQNLIAAAHAKNIKVIIAFAPNHTSPASSDQPSFAENGRLYDNGTLLGGYTNDT 171
Query: 371 KGEFYNYSGCGNT---------------FNCNHPVVRQFIVDCLRYWVTEMHVDGFRFDL 415
+ F++ G + N N+ V ++ D ++ W+ ++ +DG R D
Sbjct: 172 QNLFHHNGGTDFSTTENGIYKNLYDLADLNHNNSTVDVYLKDAIKMWL-DLGIDGIRMDA 230
Query: 416 ASIMTRG--SSLWDSVNVY 432
M G S +VN Y
Sbjct: 231 VKHMPFGWQKSFMAAVNNY 249
>pdb|1EO5|A Chain A, Bacillus Circulans Strain 251 Cyclodextrin
Glycosyltransferase In Complex With Maltoheptaose
pdb|1EO7|A Chain A, Bacillus Circulans Strain 251 Cyclodextrin
Glycosyltransferase In Complex With Maltohexaose
Length = 686
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 41/199 (20%), Positives = 81/199 (40%), Gaps = 28/199 (14%)
Query: 261 GTYLGVVEKLD--HLKDLGINCLEL-MPCHEFNELEYFSYNSVLGDYNYSSAGIR--NCG 315
G + G++ K++ +L +G+ + + P + +S + + Y + + N
Sbjct: 52 GDWQGIINKINDGYLTGMGVTAIWISQPVENIYSIINYSGVNNTAYHGYWARDFKKTNPA 111
Query: 316 HDAINEFKLLVREAHKRGIEVVMDVVFNHTVEGNDKGPILSFRG--VDNSVY---YMLAP 370
+ I +F+ L+ AH + I+V++D NHT + P + G DN Y
Sbjct: 112 YGTIADFQNLIAAAHAKNIKVIIDFAPNHTSPASSDQPSFAENGRLYDNGTLLGGYTNDT 171
Query: 371 KGEFYNYSGCGNT---------------FNCNHPVVRQFIVDCLRYWVTEMHVDGFRFDL 415
+ F++ G + N N+ V ++ D ++ W+ ++ +DG R
Sbjct: 172 QNLFHHNGGTDFSTTENGIYKNLYDLADLNHNNSTVDVYLKDAIKMWL-DLGIDGIRMAA 230
Query: 416 ASIMTRG--SSLWDSVNVY 432
M G S +VN Y
Sbjct: 231 VKHMPFGWQKSFMAAVNNY 249
>pdb|3CZE|A Chain A, Crystal Structure Analysis Of Sucrose Hydrolase (Suh)-
Tris Complex
pdb|3CZG|A Chain A, Crystal Structure Analysis Of Sucrose Hydrolase (Suh)-
Glucose Complex
Length = 644
Score = 33.5 bits (75), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 38/87 (43%), Gaps = 6/87 (6%)
Query: 261 GTYLGVVEKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYNYSSAGIRNCGHDAIN 320
GT GV E++ +L++LG+ L L+P F + +Y +D +
Sbjct: 103 GTLQGVAERVPYLQELGVRYLHLLP---FLRARAGDNDGGFAVSDYGQVEPSLGSNDDLV 159
Query: 321 EFKLLVREAHKRGIEVVMDVVFNHTVE 347
+REA GI + D V NHT +
Sbjct: 160 ALTSRLREA---GISLCADFVLNHTAD 183
>pdb|3CZK|A Chain A, Crystal Structure Analysis Of Sucrose Hydrolase(Suh)
E322q- Sucrose Complex
pdb|3CZL|A Chain A, Crystal Structure Analysis Of Sucrose Hydrolase(Suh)
E322q- Glucose Complex
Length = 644
Score = 33.5 bits (75), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 38/87 (43%), Gaps = 6/87 (6%)
Query: 261 GTYLGVVEKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYNYSSAGIRNCGHDAIN 320
GT GV E++ +L++LG+ L L+P F + +Y +D +
Sbjct: 103 GTLQGVAERVPYLQELGVRYLHLLP---FLRARAGDNDGGFAVSDYGQVEPSLGSNDDLV 159
Query: 321 EFKLLVREAHKRGIEVVMDVVFNHTVE 347
+REA GI + D V NHT +
Sbjct: 160 ALTSRLREA---GISLCADFVLNHTAD 183
>pdb|3EDF|A Chain A, Structural Base For Cyclodextrin Hydrolysis
pdb|3EDF|B Chain B, Structural Base For Cyclodextrin Hydrolysis
pdb|3EDJ|A Chain A, Structural Base For Cyclodextrin Hydrolysis
pdb|3EDJ|B Chain B, Structural Base For Cyclodextrin Hydrolysis
pdb|3EDK|A Chain A, Structural Base For Cyclodextrin Hydrolysis
pdb|3EDK|B Chain B, Structural Base For Cyclodextrin Hydrolysis
Length = 601
Score = 33.1 bits (74), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 38/79 (48%), Gaps = 5/79 (6%)
Query: 266 VVEKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYNYSSAGIRNCGHDAINEFKLL 325
++ LD++ LG L P E N+ +SY+ +Y + + + +F L
Sbjct: 150 TIDHLDYIAGLGFTQLWPTPLVE-NDAAAYSYHGYAATDHYRI----DPRYGSNEDFVRL 204
Query: 326 VREAHKRGIEVVMDVVFNH 344
EA KRG+ ++ DVV +H
Sbjct: 205 STEARKRGMGLIQDVVLSH 223
>pdb|3EDD|A Chain A, Structural Base For Cyclodextrin Hydrolysis
pdb|3EDD|B Chain B, Structural Base For Cyclodextrin Hydrolysis
Length = 601
Score = 33.1 bits (74), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 38/79 (48%), Gaps = 5/79 (6%)
Query: 266 VVEKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYNYSSAGIRNCGHDAINEFKLL 325
++ LD++ LG L P E N+ +SY+ +Y + + + +F L
Sbjct: 150 TIDHLDYIAGLGFTQLWPTPLVE-NDAAAYSYHGYAATDHYRI----DPRYGSNEDFVRL 204
Query: 326 VREAHKRGIEVVMDVVFNH 344
EA KRG+ ++ DVV +H
Sbjct: 205 STEARKRGMGLIQDVVLSH 223
>pdb|3EDE|A Chain A, Structural Base For Cyclodextrin Hydrolysis
pdb|3EDE|B Chain B, Structural Base For Cyclodextrin Hydrolysis
Length = 601
Score = 33.1 bits (74), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 38/79 (48%), Gaps = 5/79 (6%)
Query: 266 VVEKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYNYSSAGIRNCGHDAINEFKLL 325
++ LD++ LG L P E N+ +SY+ +Y + + + +F L
Sbjct: 150 TIDHLDYIAGLGFTQLWPTPLVE-NDAAAYSYHGYAATDHYRI----DPRYGSNEDFVRL 204
Query: 326 VREAHKRGIEVVMDVVFNH 344
EA KRG+ ++ DVV +H
Sbjct: 205 STEARKRGMGLIQDVVLSH 223
>pdb|2WPG|A Chain A, Sucrose Hydrolase
Length = 637
Score = 32.3 bits (72), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 28/117 (23%), Positives = 47/117 (40%), Gaps = 16/117 (13%)
Query: 231 PLKYPQRDLIIYEVHVRGFTRHESSKTEHPGTYLGVVEKLDHLKDLGINCLELMPCHEFN 290
P + Q+D++ Y +V F GT GV E++ +L++LG+ L L+P
Sbjct: 84 PGWFGQQDMLGYSAYVDRFA----------GTLRGVAERVPYLQELGVRYLHLLPFLRAR 133
Query: 291 ELEYFSYNSVLGDYNYSSAGIRNCGHDAINEFKLLVREAHKRGIEVVMDVVFNHTVE 347
+ N G + S G + ++ L I + D V NHT +
Sbjct: 134 AGD----ND--GGFAVSDYGQVEPALGSNDDLVALTARLRAANISLCADFVLNHTAD 184
>pdb|1H3G|A Chain A, Cyclomaltodextrinase From Flavobacterium Sp. No. 92: From
Dna Sequence To Protein Structure
pdb|1H3G|B Chain B, Cyclomaltodextrinase From Flavobacterium Sp. No. 92: From
Dna Sequence To Protein Structure
Length = 601
Score = 32.3 bits (72), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 37/79 (46%), Gaps = 5/79 (6%)
Query: 266 VVEKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYNYSSAGIRNCGHDAINEFKLL 325
++ LD++ LG L P E N+ +SY+ +Y + + + +F L
Sbjct: 150 TIDHLDYIAGLGFTQLWPTPLVE-NDAAAYSYHGYAATDHYRI----DPRYGSNEDFVRL 204
Query: 326 VREAHKRGIEVVMDVVFNH 344
EA KRG ++ DVV +H
Sbjct: 205 STEARKRGXGLIQDVVLSH 223
>pdb|3BH4|A Chain A, High Resolution Crystal Structure Of Bacillus
Amyloliquefaciens Alpha-Amylase
pdb|3BH4|B Chain B, High Resolution Crystal Structure Of Bacillus
Amyloliquefaciens Alpha-Amylase
Length = 483
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 35/161 (21%), Positives = 66/161 (40%), Gaps = 27/161 (16%)
Query: 271 DHLKDLGINCLELMPCHEF---NELEYFSYNSV-LGDYNYSSAGIRNCGHDAINEFKLLV 326
+HL D+GI + + P ++ ++ Y Y+ LG++ G + +E + +
Sbjct: 28 EHLSDIGITAVWIPPAYKGLSQSDNGYGPYDLYDLGEFQ--QKGTVRTKYGTKSELQDAI 85
Query: 327 REAHKRGIEVVMDVVFNHTVEGNDKGPILSF------RGVDNSVYYMLAPKGEFYNYSGC 380
H R ++V DVV NH + + + R + S Y + +F + G
Sbjct: 86 GSLHSRNVQVYGDVVLNHKAGADATEDVTAVEVNPANRNQETSEEYQIKAWTDF-RFPGR 144
Query: 381 GNTFNCNHPVVRQFIVDCLRYWVTEMHVDGFRFDLASIMTR 421
GNT++ D +W H DG +D + ++R
Sbjct: 145 GNTYS-----------DFKWHW---YHFDGADWDESRKISR 171
>pdb|1MWO|A Chain A, Crystal Structure Analysis Of The Hyperthermostable
Pyrocoocus Woesei Alpha-Amylase
pdb|1MXD|A Chain A, Structure Of A (Ca,Zn)-Dependent Alpha-Amylase From The
Hyperthermophilic Archaeon Pyrococcus Woesei
pdb|1MXG|A Chain A, Crystal Strucutre Of A (Ca,Zn)-Dependent Alpha-Amylase
From The Hyperthermophilic Archaeon Pyrococcus Woesei In
Complex With Acarbose
Length = 435
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 40/93 (43%), Gaps = 15/93 (16%)
Query: 266 VVEKLDHLKDLGINCLELMPCHE---------FNELEYFSYNSVLGDYNYSSAGIRNCGH 316
+ K+ + GI+ + L P + ++ +YF LG+Y G
Sbjct: 30 IRSKIPEWYEAGISAIWLPPPSKGMSGGYSMGYDPYDYFD----LGEY--YQKGTVETRF 83
Query: 317 DAINEFKLLVREAHKRGIEVVMDVVFNHTVEGN 349
+ E L++ AH GI+V+ DVV NH G+
Sbjct: 84 GSKEELVRLIQTAHAYGIKVIADVVINHRAGGD 116
>pdb|1E3X|A Chain A, Native Structure Of Chimaeric Amylase From B.
Amyloliquefaciens And B. Licheniformis At 1.92a
pdb|1E3Z|A Chain A, Acarbose Complex Of Chimaeric Amylase From B.
Amyloliquefaciens And B. Licheniformis At 1.93a
pdb|1E40|A Chain A, TrisMALTOTRIOSE COMPLEX OF CHIMAERIC AMYLASE FROM B.
Amyloliquefaciens And B. Licheniformis At 2.2a
pdb|1E43|A Chain A, Native Structure Of Chimaeric Amylase From B.
Amyloliquefaciens And B. Licheniformis At 1.7a
Length = 483
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 35/161 (21%), Positives = 66/161 (40%), Gaps = 27/161 (16%)
Query: 271 DHLKDLGINCLELMPCHEF---NELEYFSYNSV-LGDYNYSSAGIRNCGHDAINEFKLLV 326
+HL D+GI + + P ++ ++ Y Y+ LG++ G + +E + +
Sbjct: 28 EHLSDIGITAVWIPPAYKGLSQSDNGYGPYDLYDLGEFQ--QKGTVRTKYGTKSELQDAI 85
Query: 327 REAHKRGIEVVMDVVFNHTVEGNDKGPILSF------RGVDNSVYYMLAPKGEFYNYSGC 380
H R ++V DVV NH + + + R + S Y + +F + G
Sbjct: 86 GSLHSRNVQVYGDVVLNHKAGADATEDVTAVEVNPANRNQETSEEYQIKAWTDF-RFPGR 144
Query: 381 GNTFNCNHPVVRQFIVDCLRYWVTEMHVDGFRFDLASIMTR 421
GNT++ D +W H DG +D + ++R
Sbjct: 145 GNTYS-----------DFKWHW---YHFDGADWDESRKISR 171
>pdb|1GJU|A Chain A, Maltosyltransferase From Thermotoga Maritima
pdb|1GJW|A Chain A, Thermotoga Maritima Maltosyltransferase Complex With
Maltose
Length = 637
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 39/98 (39%), Gaps = 10/98 (10%)
Query: 261 GTYLGVVEKLDHLKDLGINCLELMPCHEFNEL--------EYFSYNSVLGDYNYSSAGIR 312
GT+ ++ L +K LG + + L+P ++L Y N + D Y +
Sbjct: 117 GTFFKMMLLLPFVKSLGADAIYLLPVSRMSDLFKKGDAPSPYSVKNPMELDERYHDPLLE 176
Query: 313 NCGHDAINEFKLLVREAHKRGIEVVMDVVFNHTVEGND 350
D EFK V H GI V++D + +D
Sbjct: 177 PFKVD--EEFKAFVEACHILGIRVILDFIPRTAARDSD 212
>pdb|2AAA|A Chain A, Calcium Binding In Alpha-Amylases: An X-Ray Diffraction
Study At 2.1 Angstroms Resolution Of Two Enzymes From
Aspergillus
Length = 484
Score = 30.8 bits (68), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 37/169 (21%), Positives = 67/169 (39%), Gaps = 17/169 (10%)
Query: 261 GTYLGVVEKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYNYSSAGIRNCGHDAIN 320
G++ G+++ LD+++ +G + + P E + + G + + N +
Sbjct: 40 GSWQGIIDHLDYIEGMGFTAIWISPITEQLPQDTADGEAYHGYWQQKIYDV-NSNFGTAD 98
Query: 321 EFKLLVREAHKRGIEVVMDVVFNH---TVEGNDKGPILSFRGVDNSVYY----MLAPKGE 373
K L H RG+ +++DVV +H GND + F D+S Y+ ++
Sbjct: 99 NLKSLSDALHARGMYLMVDVVPDHMGYAGNGNDVDYSV-FDPFDSSSYFHPYCLITDWDN 157
Query: 374 FYNYSGC--GNT------FNCNHPVVRQFIVDCLRYWVTEMHVDGFRFD 414
C G+T + VR D + V+ VDG R D
Sbjct: 158 LTMVEDCWEGDTIVSLPDLDTTETAVRTIWYDWVADLVSNYSVDGLRID 206
>pdb|3O66|A Chain A, Crystal Structure Of Glycine BetaineCARNITINECHOLINE ABC
TRANSPORTER
pdb|3O66|B Chain B, Crystal Structure Of Glycine BetaineCARNITINECHOLINE ABC
TRANSPORTER
Length = 282
Score = 30.0 bits (66), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 41/192 (21%), Positives = 73/192 (38%), Gaps = 28/192 (14%)
Query: 72 SAELETAVIKKPQSQRFQVSKGYPTPFGATLRD--GGVN-FSIFSSNAVSATLCLITLSD 128
+ L+ A IK P+ +G+ F T D G N ++ + + L T+SD
Sbjct: 76 TGALKEAPIKDPKKAXIATQQGFKKKFDQTFFDSYGFANTYAFXVTKETAKKYHLETVSD 135
Query: 129 LQENKVTEEIALDS-FANKTGDVWHVFLKG---DFK-------------------DMLYG 165
L ++ + DS + N+ GD + F K DF D+ G
Sbjct: 136 LAKHSKDLRLGXDSSWXNRKGDGYEGFKKEYGFDFGTVRPXQIGLVYDALNTEKLDVALG 195
Query: 166 YKFDGKFSPQEGHYFDPTKIVLDPYAKAVISRAQFGVLGPD-ENCWPQMACLVPTPEDE- 223
Y DG+ + + K PYA + ++ + P+ + ++ + T E +
Sbjct: 196 YSTDGRIAAYDLKVLKDDKQFFPPYAASAVATNELLRQHPELKTTINKLTGKISTSEXQR 255
Query: 224 FDWEGDLPLKYP 235
++E D K P
Sbjct: 256 LNYEADGKGKEP 267
>pdb|3HJE|A Chain A, Crystal Structure Of Sulfolobus Tokodaii Hypothetical
Maltooligosyl Trehalose Synthase
Length = 704
Score = 29.6 bits (65), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 42/94 (44%), Gaps = 23/94 (24%)
Query: 259 HPGTYLGVVEKLDHLKDLGINCLELMPC--------HEFNELEYFSYNSVLGDYNYSSAG 310
P + + +LD+ +LG+ L L P H ++ ++Y + N LG
Sbjct: 10 QPMKFSEIRNRLDYFVELGVTHLYLSPVLKARPGSTHGYDVVDYNTINDELG-------- 61
Query: 311 IRNCGHDAINEFKLLVREAHKRGIEVVMDVVFNH 344
G + E+ L+ EA +G+ ++ D+V NH
Sbjct: 62 ----GEE---EYIRLIDEAKSKGLGIIQDIVPNH 88
>pdb|1EZV|A Chain A, Structure Of The Yeast Cytochrome Bc1 Complex Co-
Crystallized With An Antibody Fv-Fragment
pdb|1KYO|A Chain A, Yeast Cytochrome Bc1 Complex With Bound Substrate
Cytochrome C
pdb|1KYO|L Chain L, Yeast Cytochrome Bc1 Complex With Bound Substrate
Cytochrome C
Length = 430
Score = 29.6 bits (65), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 38/82 (46%), Gaps = 3/82 (3%)
Query: 4 LQFTSSPLLHGSSKFINSPEFYKSKLSNLKKPPTTTFRCCNHPNKTSHFANSKAFENVTK 63
L F + + + ++S F +K S LK+ F +HPN+ +S AF+N
Sbjct: 90 LDFLNQSFIQQKANLLSSSNFEATKKSVLKQ--VQDFEDNDHPNRVLEHLHSTAFQNTPL 147
Query: 64 NLVIRASKSAELETAVIKKPQS 85
+L R + + LE V+ +S
Sbjct: 148 SLPTRGTLES-LENLVVADLES 168
>pdb|1KB9|A Chain A, Yeast Cytochrome Bc1 Complex
pdb|1P84|A Chain A, Hdbt Inhibited Yeast Cytochrome Bc1 Complex
pdb|2IBZ|A Chain A, Yeast Cytochrome Bc1 Complex With Stigmatellin
pdb|3CX5|A Chain A, Structure Of Complex Iii With Bound Cytochrome C In
Reduced State And Definition Of A Minimal Core Interface
For Electron Transfer.
pdb|3CX5|L Chain L, Structure Of Complex Iii With Bound Cytochrome C In
Reduced State And Definition Of A Minimal Core Interface
For Electron Transfer.
pdb|3CXH|A Chain A, Structure Of Yeast Complex Iii With Isoform-2 Cytochrome C
Bound And Definition Of A Minimal Core Interface For
Electron Transfer.
pdb|3CXH|L Chain L, Structure Of Yeast Complex Iii With Isoform-2 Cytochrome C
Bound And Definition Of A Minimal Core Interface For
Electron Transfer
Length = 431
Score = 29.6 bits (65), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 38/82 (46%), Gaps = 3/82 (3%)
Query: 4 LQFTSSPLLHGSSKFINSPEFYKSKLSNLKKPPTTTFRCCNHPNKTSHFANSKAFENVTK 63
L F + + + ++S F +K S LK+ F +HPN+ +S AF+N
Sbjct: 91 LDFLNQSFIQQKANLLSSSNFEATKKSVLKQ--VQDFEDNDHPNRVLEHLHSTAFQNTPL 148
Query: 64 NLVIRASKSAELETAVIKKPQS 85
+L R + + LE V+ +S
Sbjct: 149 SLPTRGTLES-LENLVVADLES 169
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.138 0.440
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,354,152
Number of Sequences: 62578
Number of extensions: 1244018
Number of successful extensions: 2780
Number of sequences better than 100.0: 144
Number of HSP's better than 100.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 50
Number of HSP's that attempted gapping in prelim test: 2440
Number of HSP's gapped (non-prelim): 255
length of query: 788
length of database: 14,973,337
effective HSP length: 107
effective length of query: 681
effective length of database: 8,277,491
effective search space: 5636971371
effective search space used: 5636971371
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)