Query 003901
Match_columns 788
No_of_seqs 343 out of 2738
Neff 8.0
Searched_HMMs 46136
Date Thu Mar 28 14:02:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003901.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003901hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR02100 glgX_debranch glycog 100.0 2E-110 5E-115 975.7 65.8 642 93-782 2-688 (688)
2 PRK03705 glycogen debranching 100.0 9E-110 2E-114 963.2 61.1 631 90-783 4-658 (658)
3 COG1523 PulA Type II secretory 100.0 2E-105 5E-110 914.6 48.9 647 88-786 10-695 (697)
4 PRK14510 putative bifunctional 100.0 1.1E-97 2E-102 912.4 59.2 604 88-726 6-648 (1221)
5 TIGR02104 pulA_typeI pullulana 100.0 1.6E-87 3.5E-92 783.0 49.1 553 85-740 2-600 (605)
6 TIGR02102 pullulan_Gpos pullul 100.0 8.3E-86 1.8E-90 787.5 56.0 604 84-784 308-1006(1111)
7 PLN02877 alpha-amylase/limit d 100.0 2.4E-86 5.2E-91 774.9 49.7 621 70-783 189-969 (970)
8 TIGR02103 pullul_strch alpha-1 100.0 3.6E-85 7.8E-90 768.7 48.1 619 70-783 99-897 (898)
9 KOG0470 1,4-alpha-glucan branc 100.0 4.4E-77 9.6E-82 660.5 38.2 613 96-753 103-736 (757)
10 PRK12568 glycogen branching en 100.0 4.1E-72 9E-77 644.9 51.7 584 89-783 114-729 (730)
11 PRK14706 glycogen branching en 100.0 3.8E-71 8.2E-76 640.3 51.0 572 96-784 25-623 (639)
12 TIGR02402 trehalose_TreZ malto 100.0 9E-72 1.9E-76 639.8 41.9 472 107-722 1-541 (542)
13 PRK12313 glycogen branching en 100.0 7.8E-71 1.7E-75 646.7 49.2 573 96-786 25-631 (633)
14 TIGR01515 branching_enzym alph 100.0 1.5E-70 3.3E-75 639.7 46.0 567 96-780 15-612 (613)
15 PRK05402 glycogen branching en 100.0 1.7E-70 3.6E-75 650.8 47.1 572 96-784 118-725 (726)
16 PRK14705 glycogen branching en 100.0 2.3E-69 5E-74 649.5 49.5 567 97-783 622-1223(1224)
17 PLN02447 1,4-alpha-glucan-bran 100.0 2.4E-66 5.3E-71 598.0 50.4 601 88-786 98-734 (758)
18 PRK10785 maltodextrin glucosid 100.0 2.8E-63 6E-68 577.3 41.2 484 102-726 16-568 (598)
19 PLN02960 alpha-amylase 100.0 4E-61 8.7E-66 552.7 51.2 542 147-784 323-893 (897)
20 COG0296 GlgB 1,4-alpha-glucan 100.0 1.6E-61 3.6E-66 544.6 36.5 576 93-781 21-627 (628)
21 PRK10933 trehalose-6-phosphate 100.0 9.6E-58 2.1E-62 524.8 38.3 451 235-783 7-551 (551)
22 TIGR02403 trehalose_treC alpha 100.0 5.2E-58 1.1E-62 528.0 35.6 450 235-781 1-542 (543)
23 TIGR02456 treS_nterm trehalose 100.0 2.3E-57 5E-62 524.0 34.4 458 235-782 2-538 (539)
24 PRK09505 malS alpha-amylase; R 100.0 5.5E-55 1.2E-59 505.8 31.8 399 231-716 182-682 (683)
25 PRK09441 cytoplasmic alpha-amy 100.0 3E-49 6.4E-54 451.1 31.8 387 261-781 19-479 (479)
26 PLN03244 alpha-amylase; Provis 100.0 9.8E-44 2.1E-48 401.0 43.3 517 145-784 326-868 (872)
27 PLN00196 alpha-amylase; Provis 100.0 6.9E-43 1.5E-47 387.6 27.0 341 260-738 40-419 (428)
28 PF00128 Alpha-amylase: Alpha 100.0 1.3E-43 2.9E-48 383.7 16.8 283 261-623 1-313 (316)
29 PLN02361 alpha-amylase 100.0 1.7E-40 3.8E-45 364.0 29.1 300 262-674 27-355 (401)
30 TIGR03852 sucrose_gtfA sucrose 100.0 3E-39 6.5E-44 357.5 23.7 386 258-722 14-467 (470)
31 PRK13840 sucrose phosphorylase 100.0 5.5E-38 1.2E-42 349.5 28.0 402 238-725 3-476 (495)
32 COG0366 AmyA Glycosidases [Car 100.0 6.2E-38 1.3E-42 362.9 25.1 406 239-727 1-495 (505)
33 KOG0471 Alpha-amylase [Carbohy 100.0 3.7E-36 7.9E-41 344.5 27.8 454 234-781 13-544 (545)
34 TIGR02455 TreS_stutzeri trehal 100.0 7.2E-35 1.6E-39 324.4 35.4 480 237-785 50-684 (688)
35 PLN02784 alpha-amylase 100.0 3.4E-35 7.3E-40 337.2 30.3 303 236-665 496-836 (894)
36 TIGR02401 trehalose_TreY malto 100.0 9.1E-30 2E-34 296.0 27.6 80 260-348 12-93 (825)
37 PRK14511 maltooligosyl trehalo 99.9 2E-25 4.3E-30 260.9 33.6 81 260-349 16-98 (879)
38 KOG2212 Alpha-amylase [Carbohy 99.9 4.5E-22 9.7E-27 203.0 20.9 379 262-740 38-465 (504)
39 smart00642 Aamy Alpha-amylase 99.8 3.8E-21 8.3E-26 187.8 10.2 95 243-347 1-97 (166)
40 PF14872 GHL5: Hypothetical gl 99.8 4.4E-17 9.4E-22 179.0 31.9 279 97-419 27-393 (811)
41 cd02852 Isoamylase_N_term Isoa 99.8 4.1E-18 8.9E-23 157.7 12.4 101 99-201 1-101 (119)
42 cd02856 Glycogen_debranching_e 99.7 1.3E-17 2.9E-22 150.1 12.0 97 97-201 1-97 (103)
43 cd02860 Pullulanase_N_term Pul 99.7 3E-16 6.6E-21 140.5 9.8 94 98-204 1-94 (100)
44 PRK14507 putative bifunctional 99.5 1.9E-14 4.2E-19 178.9 10.8 89 239-347 744-834 (1693)
45 PF02922 CBM_48: Carbohydrate- 99.5 1.2E-13 2.5E-18 119.9 7.5 81 97-191 1-85 (85)
46 cd02853 MTHase_N_term Maltooli 99.3 5.7E-12 1.2E-16 109.2 8.0 71 99-194 1-72 (85)
47 COG3280 TreY Maltooligosyl tre 99.2 7.4E-12 1.6E-16 140.8 7.1 80 260-348 15-96 (889)
48 TIGR01531 glyc_debranch glycog 99.2 1.1E-11 2.3E-16 150.1 8.2 83 259-351 127-216 (1464)
49 cd02854 Glycogen_branching_enz 99.2 3.6E-11 7.9E-16 106.7 7.8 79 103-197 3-88 (99)
50 cd02855 Glycogen_branching_enz 98.9 4.5E-09 9.9E-14 95.0 8.9 86 97-197 9-98 (106)
51 PF11852 DUF3372: Domain of un 98.7 1.2E-08 2.6E-13 97.9 5.8 115 648-783 41-167 (168)
52 PF11941 DUF3459: Domain of un 98.7 3.4E-08 7.3E-13 86.4 7.2 89 653-780 1-89 (89)
53 cd02858 Esterase_N_term Estera 98.7 6.9E-08 1.5E-12 83.6 8.0 68 104-195 5-74 (85)
54 PRK05402 glycogen branching en 98.5 2.3E-07 4.9E-12 111.7 7.1 80 96-194 19-98 (726)
55 PF14871 GHL6: Hypothetical gl 98.4 3.2E-06 7E-11 79.2 11.0 124 268-415 4-132 (132)
56 PF14701 hDGE_amylase: glucano 98.3 1.9E-06 4.1E-11 94.8 10.3 82 260-351 18-108 (423)
57 PF02638 DUF187: Glycosyl hydr 98.3 3.1E-06 6.8E-11 91.5 11.7 142 262-416 17-163 (311)
58 cd02861 E_set_proteins_like E 98.2 4.4E-06 9.6E-11 71.8 7.3 69 106-197 3-72 (82)
59 cd02688 E_set E or "early" set 98.2 8.5E-06 1.8E-10 69.6 8.2 58 105-171 4-62 (83)
60 PF02806 Alpha-amylase_C: Alph 98.1 5.3E-06 1.1E-10 73.4 5.4 86 692-783 7-94 (95)
61 PF02324 Glyco_hydro_70: Glyco 98.0 8.3E-06 1.8E-10 92.2 6.8 109 236-347 562-674 (809)
62 COG1649 Uncharacterized protei 97.6 0.00027 5.9E-09 77.9 10.3 147 260-419 60-211 (418)
63 cd06592 GH31_glucosidase_KIAA1 97.5 0.0009 1.9E-08 72.4 12.6 133 261-417 27-165 (303)
64 cd06593 GH31_xylosidase_YicI Y 97.4 0.0011 2.5E-08 71.8 11.3 138 261-421 21-163 (308)
65 cd06602 GH31_MGAM_SI_GAA This 97.1 0.0034 7.3E-08 69.0 12.0 138 263-417 23-165 (339)
66 PF02065 Melibiase: Melibiase; 97.1 0.0074 1.6E-07 67.2 13.9 140 263-420 57-196 (394)
67 cd06597 GH31_transferase_CtsY 97.0 0.0015 3.3E-08 71.7 7.8 153 262-418 22-188 (340)
68 cd06599 GH31_glycosidase_Aec37 96.9 0.0073 1.6E-07 65.8 11.3 134 264-417 29-168 (317)
69 KOG3625 Alpha amylase [Carbohy 96.8 0.0011 2.5E-08 77.0 4.9 82 260-351 138-228 (1521)
70 PRK14507 putative bifunctional 96.8 0.0097 2.1E-07 76.3 13.3 119 602-738 1502-1664(1693)
71 cd06594 GH31_glucosidase_YihQ 96.8 0.0026 5.5E-08 69.2 7.1 143 262-419 21-168 (317)
72 PF02324 Glyco_hydro_70: Glyco 96.7 0.0066 1.4E-07 69.5 9.7 289 381-740 143-482 (809)
73 PF10438 Cyc-maltodext_C: Cycl 96.5 0.0029 6.2E-08 53.4 3.6 70 693-781 8-77 (78)
74 cd06591 GH31_xylosidase_XylS X 96.5 0.0062 1.4E-07 66.4 7.3 134 262-417 22-159 (319)
75 PF13200 DUF4015: Putative gly 96.4 0.033 7.2E-07 59.9 12.0 135 261-419 10-149 (316)
76 PRK14508 4-alpha-glucanotransf 96.2 0.15 3.2E-06 58.9 17.0 25 319-343 197-221 (497)
77 cd06604 GH31_glucosidase_II_Ma 96.2 0.036 7.9E-07 61.0 11.5 134 262-418 22-160 (339)
78 cd06600 GH31_MGAM-like This fa 96.0 0.015 3.3E-07 63.2 7.6 134 262-417 22-160 (317)
79 PRK10426 alpha-glucosidase; Pr 96.0 0.047 1E-06 64.9 11.8 140 264-421 221-367 (635)
80 cd02859 AMPKbeta_GBD_like AMP- 95.9 0.019 4.2E-07 48.8 5.8 55 106-171 3-57 (79)
81 PF13199 Glyco_hydro_66: Glyco 95.8 0.08 1.7E-06 61.4 12.2 146 262-419 116-270 (559)
82 PRK14582 pgaB outer membrane N 95.7 0.11 2.5E-06 61.5 13.3 138 262-419 332-470 (671)
83 PLN02635 disproportionating en 95.7 0.049 1.1E-06 62.9 10.0 24 319-342 223-246 (538)
84 PF08533 Glyco_hydro_42C: Beta 95.4 0.032 6.8E-07 44.4 5.2 54 698-781 4-57 (58)
85 PRK10658 putative alpha-glucos 95.4 0.029 6.4E-07 66.9 7.1 93 321-420 326-421 (665)
86 smart00632 Aamy_C Aamy_C domai 95.4 0.079 1.7E-06 45.3 7.9 72 691-781 5-78 (81)
87 PF01055 Glyco_hydro_31: Glyco 95.4 0.018 3.9E-07 65.8 5.2 137 262-419 41-182 (441)
88 cd06598 GH31_transferase_CtsZ 95.4 0.036 7.7E-07 60.4 7.2 138 262-417 22-164 (317)
89 cd06603 GH31_GANC_GANAB_alpha 94.0 0.11 2.4E-06 57.2 6.9 134 262-417 22-162 (339)
90 COG3280 TreY Maltooligosyl tre 94.0 0.027 5.9E-07 65.2 1.9 96 602-715 714-826 (889)
91 cd06595 GH31_xylosidase_XylS-l 93.5 0.14 3.1E-06 55.1 6.4 84 321-416 75-158 (292)
92 COG1501 Alpha-glucosidases, fa 93.2 0.16 3.5E-06 61.4 6.9 92 322-420 323-418 (772)
93 PLN02763 hydrolase, hydrolyzin 92.5 0.32 6.9E-06 59.8 7.9 133 262-417 199-336 (978)
94 PF05913 DUF871: Bacterial pro 92.1 0.24 5.2E-06 54.5 5.7 61 262-345 12-72 (357)
95 cd06562 GH20_HexA_HexB-like Be 91.8 1.2 2.7E-05 49.1 11.1 123 263-407 17-149 (348)
96 cd06542 GH18_EndoS-like Endo-b 91.8 0.54 1.2E-05 49.4 7.9 65 318-416 49-113 (255)
97 TIGR00217 malQ 4-alpha-glucano 91.6 0.75 1.6E-05 53.3 9.4 26 320-345 212-237 (513)
98 PRK14510 putative bifunctional 91.2 5.3 0.00011 51.4 17.1 33 257-289 739-771 (1221)
99 PRK11052 malQ 4-alpha-glucanot 91.1 0.99 2.1E-05 54.2 9.9 31 258-288 159-189 (695)
100 PF00150 Cellulase: Cellulase 90.8 0.37 8E-06 51.0 5.6 64 265-343 22-85 (281)
101 cd06568 GH20_SpHex_like A subg 90.6 1.9 4.2E-05 47.2 11.0 130 262-405 16-152 (329)
102 PF07745 Glyco_hydro_53: Glyco 90.5 0.83 1.8E-05 49.8 7.8 58 267-346 27-84 (332)
103 COG1640 MalQ 4-alpha-glucanotr 90.4 11 0.00024 43.4 16.9 26 320-345 210-235 (520)
104 cd02857 CD_pullulan_degrading_ 90.0 1.1 2.4E-05 40.7 7.2 66 97-169 12-80 (116)
105 KOG1065 Maltase glucoamylase a 89.9 2.2 4.7E-05 51.0 11.1 136 260-417 307-448 (805)
106 cd06564 GH20_DspB_LnbB-like Gl 89.7 1.6 3.4E-05 47.8 9.4 130 262-407 15-155 (326)
107 PLN03244 alpha-amylase; Provis 89.1 0.44 9.5E-06 56.7 4.6 63 91-158 117-181 (872)
108 cd06565 GH20_GcnA-like Glycosy 88.6 3.6 7.9E-05 44.4 11.1 114 262-407 15-131 (301)
109 cd06601 GH31_lyase_GLase GLase 88.4 1.2 2.6E-05 48.8 7.3 110 262-417 22-133 (332)
110 PF02449 Glyco_hydro_42: Beta- 88.1 2.2 4.7E-05 47.7 9.3 123 264-415 10-136 (374)
111 cd02871 GH18_chitinase_D-like 87.6 2.1 4.6E-05 46.5 8.6 63 318-417 58-120 (312)
112 cd06589 GH31 The enzymes of gl 87.5 3.5 7.6E-05 43.6 10.0 94 261-419 21-118 (265)
113 cd02875 GH18_chitobiase Chitob 87.5 1.2 2.6E-05 49.4 6.6 55 323-416 67-121 (358)
114 cd06563 GH20_chitobiase-like T 87.5 4.1 8.9E-05 45.2 10.9 135 263-407 17-165 (357)
115 cd02742 GH20_hexosaminidase Be 87.3 2.9 6.4E-05 45.2 9.4 120 262-406 14-147 (303)
116 PF01301 Glyco_hydro_35: Glyco 87.3 0.54 1.2E-05 51.2 3.7 61 264-341 24-84 (319)
117 COG3589 Uncharacterized conser 86.7 0.78 1.7E-05 49.0 4.3 58 265-345 17-74 (360)
118 PLN02950 4-alpha-glucanotransf 86.2 18 0.0004 44.9 16.4 32 259-290 278-309 (909)
119 PF02446 Glyco_hydro_77: 4-alp 85.6 1.6 3.6E-05 50.5 6.7 24 320-343 192-215 (496)
120 PF09154 DUF1939: Domain of un 85.5 1.2 2.7E-05 35.1 3.9 55 709-780 1-56 (57)
121 COG1523 PulA Type II secretory 85.2 2.9 6.4E-05 49.9 8.6 84 96-198 65-155 (697)
122 PF14488 DUF4434: Domain of un 84.6 3.1 6.6E-05 40.8 7.1 72 263-345 19-90 (166)
123 TIGR01531 glyc_debranch glycog 84.1 16 0.00034 46.8 14.4 60 387-475 487-546 (1464)
124 cd06545 GH18_3CO4_chitinase Th 84.1 3.2 6.9E-05 43.6 7.6 64 319-416 45-108 (253)
125 cd06570 GH20_chitobiase-like_1 83.1 8.9 0.00019 41.6 10.6 121 263-406 17-146 (311)
126 PF00728 Glyco_hydro_20: Glyco 81.1 3.5 7.5E-05 45.5 6.8 140 262-412 16-161 (351)
127 PLN03059 beta-galactosidase; P 80.6 2.7 5.8E-05 50.9 5.9 60 264-340 59-118 (840)
128 PF14883 GHL13: Hypothetical g 80.0 26 0.00057 37.1 12.2 119 268-413 21-142 (294)
129 TIGR03849 arch_ComA phosphosul 79.0 5.5 0.00012 41.1 6.8 54 260-340 60-120 (237)
130 PRK12568 glycogen branching en 78.6 4.1 8.9E-05 49.0 6.6 76 97-194 29-105 (730)
131 COG3867 Arabinogalactan endo-1 75.8 7.4 0.00016 41.0 6.6 59 269-345 68-129 (403)
132 cd06569 GH20_Sm-chitobiase-lik 71.5 25 0.00054 40.2 10.3 87 318-404 95-191 (445)
133 PF07071 DUF1341: Protein of u 68.2 12 0.00026 37.3 5.8 44 266-336 137-180 (218)
134 PF10566 Glyco_hydro_97: Glyco 67.4 38 0.00083 35.9 9.9 68 258-341 26-94 (273)
135 PF03198 Glyco_hydro_72: Gluca 66.4 6.3 0.00014 42.2 3.8 53 264-346 53-105 (314)
136 PF02903 Alpha-amylase_N: Alph 66.0 20 0.00042 32.9 6.7 68 102-169 18-88 (120)
137 PF02679 ComA: (2R)-phospho-3- 65.6 12 0.00026 38.9 5.6 55 260-341 73-134 (244)
138 TIGR03356 BGL beta-galactosida 65.0 13 0.00028 42.3 6.3 66 260-341 50-115 (427)
139 cd02874 GH18_CFLE_spore_hydrol 64.5 11 0.00024 40.8 5.5 66 322-416 47-112 (313)
140 PRK05628 coproporphyrinogen II 62.1 30 0.00066 38.5 8.6 62 268-346 109-171 (375)
141 cd06546 GH18_CTS3_chitinase GH 61.1 34 0.00074 36.0 8.3 29 388-416 93-121 (256)
142 PF13380 CoA_binding_2: CoA bi 61.0 14 0.00031 33.7 4.8 42 264-338 66-107 (116)
143 KOG3625 Alpha amylase [Carbohy 60.9 1.6E+02 0.0036 36.1 14.0 60 387-475 509-568 (1521)
144 cd00598 GH18_chitinase-like Th 58.1 40 0.00087 33.7 8.0 31 387-417 84-114 (210)
145 KOG0496 Beta-galactosidase [Ca 58.0 18 0.00039 42.4 5.8 63 266-345 51-113 (649)
146 TIGR01211 ELP3 histone acetylt 57.4 56 0.0012 38.2 9.8 62 268-346 207-268 (522)
147 TIGR03581 EF_0839 conserved hy 55.6 21 0.00045 36.1 5.0 43 266-335 137-179 (236)
148 COG2730 BglC Endoglucanase [Ca 55.0 20 0.00043 40.6 5.5 60 267-340 76-136 (407)
149 PRK10076 pyruvate formate lyas 54.4 41 0.00089 34.4 7.2 67 264-338 145-211 (213)
150 COG1306 Uncharacterized conser 51.5 69 0.0015 34.0 8.2 140 264-420 77-222 (400)
151 PRK15452 putative protease; Pr 51.3 1.1E+02 0.0023 35.1 10.7 26 318-345 44-69 (443)
152 PRK14705 glycogen branching en 51.0 32 0.0007 44.1 7.0 77 97-194 522-601 (1224)
153 PF01120 Alpha_L_fucos: Alpha- 50.2 85 0.0018 34.6 9.5 122 267-417 94-216 (346)
154 smart00518 AP2Ec AP endonuclea 50.1 1.5E+02 0.0032 31.1 11.1 52 266-338 12-63 (273)
155 TIGR01370 cysRS possible cyste 49.6 46 0.00099 36.1 7.0 37 382-419 136-172 (315)
156 PRK13210 putative L-xylulose 5 49.3 1.5E+02 0.0033 31.2 11.1 54 265-338 17-70 (284)
157 TIGR00433 bioB biotin syntheta 48.9 1.1E+02 0.0023 32.7 9.9 60 267-344 123-182 (296)
158 COG0041 PurE Phosphoribosylcar 48.7 53 0.0011 31.5 6.3 52 261-340 13-64 (162)
159 PRK14508 4-alpha-glucanotransf 48.3 23 0.0005 41.0 4.8 33 258-290 20-53 (497)
160 PRK08208 coproporphyrinogen II 47.6 68 0.0015 36.5 8.4 62 268-346 142-204 (430)
161 KOG2499 Beta-N-acetylhexosamin 47.5 71 0.0015 36.3 8.1 30 318-347 248-278 (542)
162 PLN02808 alpha-galactosidase 47.4 46 0.001 37.2 6.7 73 693-785 307-386 (386)
163 PRK08207 coproporphyrinogen II 46.9 89 0.0019 36.2 9.3 63 267-346 269-332 (488)
164 cd02877 GH18_hevamine_XipI_cla 45.8 61 0.0013 34.6 7.2 22 318-339 57-78 (280)
165 cd06547 GH85_ENGase Endo-beta- 45.7 20 0.00044 39.3 3.7 66 324-419 50-115 (339)
166 PF02446 Glyco_hydro_77: 4-alp 45.5 21 0.00045 41.5 3.9 35 259-293 13-48 (496)
167 TIGR00539 hemN_rel putative ox 43.1 1.3E+02 0.0029 33.2 9.7 62 268-346 101-163 (360)
168 smart00812 Alpha_L_fucos Alpha 42.5 1.8E+02 0.0038 32.7 10.5 117 267-417 84-203 (384)
169 PRK01060 endonuclease IV; Prov 42.5 46 0.00099 35.2 5.7 52 264-336 12-63 (281)
170 PRK05904 coproporphyrinogen II 42.4 40 0.00086 37.3 5.4 64 267-347 103-167 (353)
171 PF01212 Beta_elim_lyase: Beta 41.5 24 0.00052 37.9 3.4 24 318-341 143-166 (290)
172 PRK09058 coproporphyrinogen II 41.3 1.1E+02 0.0024 35.1 8.9 63 267-346 163-226 (449)
173 COG1242 Predicted Fe-S oxidore 41.0 97 0.0021 32.8 7.4 58 318-419 166-223 (312)
174 PRK09852 cryptic 6-phospho-bet 40.5 64 0.0014 37.3 6.8 68 260-345 67-135 (474)
175 PLN02950 4-alpha-glucanotransf 40.4 47 0.001 41.5 6.0 60 106-169 154-218 (909)
176 cd04824 eu_ALAD_PBGS_cysteine_ 40.2 1.2E+02 0.0026 32.7 8.1 111 259-412 46-159 (320)
177 PRK13957 indole-3-glycerol-pho 39.5 80 0.0017 33.0 6.7 23 318-340 136-158 (247)
178 PF01791 DeoC: DeoC/LacD famil 39.5 21 0.00045 37.0 2.4 59 267-345 79-137 (236)
179 PRK11052 malQ 4-alpha-glucanot 39.2 58 0.0013 39.4 6.4 20 532-551 539-558 (695)
180 PRK05660 HemN family oxidoredu 38.3 1.7E+02 0.0036 32.7 9.6 62 268-346 108-170 (378)
181 PRK09249 coproporphyrinogen II 37.9 1.7E+02 0.0037 33.5 9.8 63 267-346 151-214 (453)
182 PRK04302 triosephosphate isome 37.8 58 0.0013 33.4 5.4 44 270-340 78-121 (223)
183 PF13204 DUF4038: Protein of u 37.4 87 0.0019 33.6 6.9 76 262-344 28-110 (289)
184 PF00490 ALAD: Delta-aminolevu 36.6 1E+02 0.0022 33.4 6.9 135 238-412 27-165 (324)
185 cd04823 ALAD_PBGS_aspartate_ri 36.3 1.4E+02 0.003 32.2 7.9 109 260-412 50-160 (320)
186 PF08821 CGGC: CGGC domain; I 36.1 1.3E+02 0.0029 27.1 6.7 54 263-338 51-104 (107)
187 PRK15447 putative protease; Pr 35.7 89 0.0019 33.7 6.6 52 261-338 15-66 (301)
188 PRK13347 coproporphyrinogen II 35.5 2E+02 0.0043 33.0 9.8 63 267-346 152-215 (453)
189 PRK13384 delta-aminolevulinic 35.4 1.5E+02 0.0032 32.0 7.9 129 238-412 31-165 (322)
190 PRK08446 coproporphyrinogen II 34.9 68 0.0015 35.4 5.7 64 267-347 98-162 (350)
191 cd05814 CBM20_Prei4 Prei4, N-t 34.7 92 0.002 28.5 5.7 62 106-169 2-67 (120)
192 PLN03236 4-alpha-glucanotransf 34.4 66 0.0014 39.0 5.8 26 320-345 274-299 (745)
193 TIGR01210 conserved hypothetic 34.2 91 0.002 33.8 6.5 62 267-344 117-179 (313)
194 TIGR00538 hemN oxygen-independ 33.9 2.1E+02 0.0045 32.9 9.7 63 267-346 151-214 (455)
195 cd05816 CBM20_DPE2_repeat2 Dis 33.7 1.1E+02 0.0024 26.9 5.8 60 106-169 1-65 (99)
196 PRK00278 trpC indole-3-glycero 33.4 85 0.0018 33.1 5.9 44 269-341 125-168 (260)
197 PF07021 MetW: Methionine bios 33.3 81 0.0018 31.6 5.3 74 270-346 95-172 (193)
198 cd07937 DRE_TIM_PC_TC_5S Pyruv 33.0 3.5E+02 0.0075 28.7 10.5 83 266-420 93-176 (275)
199 COG1441 MenC O-succinylbenzoat 32.3 54 0.0012 33.4 3.8 23 316-338 240-262 (321)
200 PRK11145 pflA pyruvate formate 32.1 1.7E+02 0.0036 30.3 7.9 81 239-337 164-245 (246)
201 TIGR03470 HpnH hopanoid biosyn 31.7 1.8E+02 0.0039 31.6 8.3 49 259-335 144-193 (318)
202 PF15640 Tox-MPTase4: Metallop 31.6 45 0.00097 30.6 2.8 26 315-340 17-42 (132)
203 PF14509 GH97_C: Glycosyl-hydr 31.5 1.3E+02 0.0029 26.9 5.9 82 694-784 14-103 (103)
204 PLN03236 4-alpha-glucanotransf 31.5 95 0.0021 37.7 6.4 33 258-290 77-109 (745)
205 PRK15014 6-phospho-beta-glucos 31.4 87 0.0019 36.2 6.0 66 260-341 65-131 (477)
206 PRK13361 molybdenum cofactor b 31.0 1.3E+02 0.0028 32.8 7.1 52 260-337 136-187 (329)
207 cd00958 DhnA Class I fructose- 30.5 80 0.0017 32.5 5.1 59 261-342 73-131 (235)
208 PRK09856 fructoselysine 3-epim 30.4 1E+02 0.0023 32.3 6.1 51 265-337 14-64 (275)
209 PRK09283 delta-aminolevulinic 30.3 3.5E+02 0.0076 29.3 9.7 129 238-412 29-163 (323)
210 PRK11059 regulatory protein Cs 29.9 94 0.002 37.4 6.3 90 237-345 516-615 (640)
211 PF04914 DltD_C: DltD C-termin 29.4 98 0.0021 29.0 4.9 57 318-408 34-90 (130)
212 KOG0259 Tyrosine aminotransfer 29.4 64 0.0014 35.6 4.1 32 318-349 217-248 (447)
213 PLN02803 beta-amylase 29.1 4.7E+02 0.01 30.4 11.0 85 237-347 84-171 (548)
214 PRK11194 ribosomal RNA large s 28.7 2.6E+02 0.0056 31.2 8.9 69 239-338 263-331 (372)
215 PRK14457 ribosomal RNA large s 28.4 2.6E+02 0.0056 30.9 8.8 67 240-337 256-323 (345)
216 cd00384 ALAD_PBGS Porphobilino 28.2 4.5E+02 0.0098 28.4 10.0 107 259-411 46-154 (314)
217 COG1874 LacA Beta-galactosidas 28.2 1E+02 0.0022 37.0 5.9 61 264-342 30-90 (673)
218 PF00232 Glyco_hydro_1: Glycos 28.1 85 0.0018 36.1 5.2 101 260-407 54-155 (455)
219 cd03412 CbiK_N Anaerobic cobal 27.9 1.2E+02 0.0025 28.2 5.2 30 263-292 55-84 (127)
220 PRK06256 biotin synthase; Vali 27.3 86 0.0019 34.3 4.9 60 267-344 152-211 (336)
221 TIGR00542 hxl6Piso_put hexulos 27.2 1.1E+02 0.0023 32.5 5.5 54 264-337 16-69 (279)
222 PLN02635 disproportionating en 27.1 94 0.002 36.4 5.3 32 258-289 43-75 (538)
223 PF00218 IGPS: Indole-3-glycer 26.8 1.4E+02 0.003 31.5 6.0 42 270-340 124-165 (254)
224 cd05808 CBM20_alpha_amylase Al 26.5 1.2E+02 0.0025 26.3 4.7 59 107-169 3-64 (95)
225 PLN02161 beta-amylase 26.4 5.2E+02 0.011 29.9 10.6 88 238-345 91-179 (531)
226 TIGR01496 DHPS dihydropteroate 26.2 2.8E+02 0.006 29.2 8.2 74 241-340 5-82 (257)
227 TIGR03471 HpnJ hopanoid biosyn 25.9 1.7E+02 0.0036 33.8 7.1 29 318-346 321-349 (472)
228 COG1809 (2R)-phospho-3-sulfola 25.8 1.3E+02 0.0027 30.8 5.1 46 267-339 93-138 (258)
229 PRK14462 ribosomal RNA large s 25.8 3E+02 0.0064 30.6 8.6 69 239-338 264-332 (356)
230 COG2200 Rtn c-di-GMP phosphodi 25.6 1.1E+02 0.0025 32.0 5.2 86 239-343 121-216 (256)
231 PLN02801 beta-amylase 25.3 2.8E+02 0.0061 32.0 8.3 67 262-347 35-101 (517)
232 PF03711 OKR_DC_1_C: Orn/Lys/A 25.3 72 0.0016 30.1 3.2 37 607-668 87-123 (136)
233 cd06548 GH18_chitinase The GH1 25.0 80 0.0017 34.3 4.1 29 387-415 105-133 (322)
234 PLN02692 alpha-galactosidase 24.7 1.7E+02 0.0037 33.0 6.5 72 694-785 332-411 (412)
235 PRK08599 coproporphyrinogen II 24.7 1.1E+02 0.0024 34.0 5.2 64 267-347 100-164 (377)
236 PLN02814 beta-glucosidase 24.5 1.7E+02 0.0037 34.1 6.7 69 259-345 72-140 (504)
237 COG4943 Predicted signal trans 24.4 91 0.002 35.5 4.3 65 242-341 415-479 (524)
238 cd06543 GH18_PF-ChiA-like PF-C 24.4 2E+02 0.0044 30.9 6.9 96 271-417 19-114 (294)
239 PRK07094 biotin synthase; Prov 24.4 1.2E+02 0.0027 32.8 5.4 63 267-346 129-191 (323)
240 PRK09028 cystathionine beta-ly 24.1 85 0.0018 35.3 4.2 29 315-343 158-186 (394)
241 PLN02905 beta-amylase 24.0 3.2E+02 0.0069 32.4 8.5 86 239-347 265-350 (702)
242 PRK07379 coproporphyrinogen II 24.0 1.6E+02 0.0035 33.1 6.4 63 268-347 116-179 (400)
243 cd05815 CBM20_DPE2_repeat1 Dis 23.8 2E+02 0.0043 25.3 5.7 62 107-169 2-66 (101)
244 PRK05939 hypothetical protein; 23.8 86 0.0019 35.3 4.1 29 314-342 142-170 (397)
245 PRK05967 cystathionine beta-ly 23.6 89 0.0019 35.2 4.2 30 315-344 161-190 (395)
246 cd02876 GH18_SI-CLP Stabilin-1 23.3 87 0.0019 34.0 4.0 29 387-415 88-116 (318)
247 PLN00197 beta-amylase; Provisi 23.2 3.3E+02 0.0072 31.7 8.4 87 238-347 105-191 (573)
248 COG0134 TrpC Indole-3-glycerol 23.1 88 0.0019 32.8 3.7 22 319-340 142-163 (254)
249 COG0520 csdA Selenocysteine ly 22.9 71 0.0015 36.1 3.2 29 313-341 172-200 (405)
250 PRK05799 coproporphyrinogen II 22.8 1.4E+02 0.0029 33.3 5.5 63 268-347 100-163 (374)
251 PRK09057 coproporphyrinogen II 22.7 1.6E+02 0.0034 33.0 5.9 63 268-347 105-167 (380)
252 PRK14467 ribosomal RNA large s 22.7 3.8E+02 0.0082 29.6 8.7 69 240-338 254-323 (348)
253 cd02879 GH18_plant_chitinase_c 22.7 86 0.0019 33.8 3.7 29 387-415 88-116 (299)
254 PRK06582 coproporphyrinogen II 22.6 1.9E+02 0.0042 32.4 6.6 64 268-348 112-175 (390)
255 PRK06294 coproporphyrinogen II 22.5 1.4E+02 0.0031 33.2 5.5 63 268-347 104-167 (370)
256 cd06450 DOPA_deC_like DOPA dec 22.4 1.3E+02 0.0028 32.6 5.1 30 316-345 161-190 (345)
257 COG0113 HemB Delta-aminolevuli 22.3 2.9E+02 0.0062 29.7 7.1 92 238-345 31-128 (330)
258 PLN02591 tryptophan synthase 22.2 2.3E+02 0.0049 29.8 6.6 50 265-345 94-143 (250)
259 cd05817 CBM20_DSP Dual-specifi 22.2 1.7E+02 0.0038 25.7 5.0 59 107-169 2-63 (100)
260 PLN02705 beta-amylase 22.2 3.3E+02 0.0072 32.1 8.2 86 239-347 247-332 (681)
261 smart00636 Glyco_18 Glycosyl h 22.2 96 0.0021 33.7 4.1 30 387-416 87-116 (334)
262 COG1891 Uncharacterized protei 22.1 50 0.0011 32.3 1.5 26 316-341 163-188 (235)
263 PF00686 CBM_20: Starch bindin 22.0 1.5E+02 0.0032 25.8 4.4 64 106-169 3-69 (96)
264 cd03416 CbiX_SirB_N Sirohydroc 22.0 1.8E+02 0.0039 25.3 5.1 26 265-290 45-70 (101)
265 cd00945 Aldolase_Class_I Class 22.0 2.4E+02 0.0052 27.5 6.7 62 263-345 64-125 (201)
266 PRK13511 6-phospho-beta-galact 21.9 2.3E+02 0.0051 32.6 7.2 69 259-345 49-117 (469)
267 PRK14581 hmsF outer membrane N 21.9 8.8E+02 0.019 29.4 12.1 127 266-414 336-465 (672)
268 cd06549 GH18_trifunctional GH1 21.8 94 0.002 33.4 3.8 31 386-416 83-113 (298)
269 PRK09936 hypothetical protein; 21.5 2.4E+02 0.0052 30.2 6.5 58 263-343 37-95 (296)
270 PRK09593 arb 6-phospho-beta-gl 21.4 2.1E+02 0.0045 33.2 6.6 69 259-345 68-137 (478)
271 PRK05692 hydroxymethylglutaryl 21.4 3.6E+02 0.0077 28.9 8.1 62 319-419 119-181 (287)
272 PRK00164 moaA molybdenum cofac 21.2 2.2E+02 0.0048 30.9 6.7 51 260-336 140-190 (331)
273 PRK13209 L-xylulose 5-phosphat 21.2 1.6E+02 0.0035 31.0 5.5 54 265-338 22-75 (283)
274 cd04724 Tryptophan_synthase_al 21.1 1.9E+02 0.0041 30.1 5.8 48 266-344 93-140 (242)
275 COG3669 Alpha-L-fucosidase [Ca 21.1 1.2E+03 0.026 26.2 11.8 91 236-346 21-124 (430)
276 PRK09257 aromatic amino acid a 21.0 2E+02 0.0044 32.0 6.5 60 262-346 158-218 (396)
277 TIGR03565 alk_sulf_monoox alka 21.0 1.1E+02 0.0024 33.7 4.2 28 258-285 301-328 (346)
278 TIGR01233 lacG 6-phospho-beta- 21.0 1.9E+02 0.0042 33.3 6.3 102 260-409 49-150 (467)
279 PF00724 Oxidored_FMN: NADH:fl 20.9 4.2E+02 0.009 29.1 8.7 29 318-348 78-106 (341)
280 PRK01278 argD acetylornithine 20.9 1.8E+02 0.004 32.2 6.1 29 318-346 194-222 (389)
281 PRK09989 hypothetical protein; 20.8 1.8E+02 0.0039 30.3 5.6 19 266-284 17-35 (258)
282 PLN02849 beta-glucosidase 20.8 1.8E+02 0.0038 34.0 5.9 69 259-345 74-142 (503)
283 cd07944 DRE_TIM_HOA_like 4-hyd 20.7 3.1E+02 0.0068 28.9 7.4 58 318-420 107-165 (266)
284 PRK09589 celA 6-phospho-beta-g 20.5 2E+02 0.0043 33.3 6.3 69 259-345 62-131 (476)
285 PF00704 Glyco_hydro_18: Glyco 20.5 1.1E+02 0.0023 33.3 4.0 31 388-418 96-126 (343)
286 PTZ00376 aspartate aminotransf 20.5 2E+02 0.0044 32.1 6.4 30 318-347 194-223 (404)
287 cd02872 GH18_chitolectin_chito 20.4 1E+02 0.0022 34.1 3.8 29 387-415 92-120 (362)
288 PF01261 AP_endonuc_2: Xylose 20.4 70 0.0015 31.6 2.3 45 270-338 1-45 (213)
289 PF03644 Glyco_hydro_85: Glyco 20.1 1.6E+02 0.0034 32.0 5.1 19 324-342 46-64 (311)
290 PF13407 Peripla_BP_4: Peripla 20.1 2.1E+02 0.0045 29.3 5.9 48 260-338 38-85 (257)
291 cd00615 Orn_deC_like Ornithine 20.0 71 0.0015 34.1 2.4 27 316-342 166-192 (294)
No 1
>TIGR02100 glgX_debranch glycogen debranching enzyme GlgX. This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase.
Probab=100.00 E-value=2.4e-110 Score=975.67 Aligned_cols=642 Identities=43% Similarity=0.767 Sum_probs=542.7
Q ss_pred CCCCCCCcEEeCCcEEEEEEcCCCCEEEEEEEeCCCccCCceeeEEecccccCCCCCEEEEEEcCCCCCceeeEEEcCCc
Q 003901 93 GYPTPFGATLRDGGVNFSIFSSNAVSATLCLITLSDLQENKVTEEIALDSFANKTGDVWHVFLKGDFKDMLYGYKFDGKF 172 (788)
Q Consensus 93 g~~~~lGa~~~~~~~~F~vwap~A~~V~L~l~~~~d~~~~~~~~~~~l~~~~~~~~gvW~~~i~~~~~~~~Y~y~~~g~~ 172 (788)
|.|.||||++.+++|+|+||||+|++|+|+||+..+ ..+..+++|. .+++|+|+++|+++.+|.+|+|+|+|.+
T Consensus 2 g~~~~LGa~~~~~g~~F~vwap~A~~V~L~l~~~~~---~~~~~~~~m~---~~~~gvW~~~v~~~~~g~~Y~yrv~g~~ 75 (688)
T TIGR02100 2 GMPFPLGATWDGQGVNFALFSANAEKVELCLFDAQG---EKEEARLPLP---ERTDDIWHGYLPGAQPGQLYGYRVHGPY 75 (688)
T ss_pred CCCcCCCeEEeCCcEEEEEECCCCCEEEEEEEcCCC---CceeeEEecc---cCCCCEEEEEECCCCCCCEEEEEEeeee
Confidence 788999999999999999999999999999997422 1233466774 4578999999999999999999999988
Q ss_pred CCCCCcccCCcccccCcccceeeecccccC-------CCCC--------CCCCCcceecccCCCCCCCCCCC-CCCCCCC
Q 003901 173 SPQEGHYFDPTKIVLDPYAKAVISRAQFGV-------LGPD--------ENCWPQMACLVPTPEDEFDWEGD-LPLKYPQ 236 (788)
Q Consensus 173 ~~~~g~~~~~~~~~~DPya~~~~~~~~~~~-------~~~~--------~~~~~~~~~~~~~~~~~~~W~~~-~~~~~~~ 236 (788)
.|..|.+|++.++++||||+++..+..++. ..+. ........++|.+ ..|+|+++ .++..+|
T Consensus 76 ~~~~g~~f~~~~~~~DPYA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~v~d--~~~~w~~~~~~p~~~~ 153 (688)
T TIGR02100 76 DPENGHRFNPNKLLLDPYAKALDGDLIWDDALFGYRIGHPDQDLSFDERDSAPGMPKAVVVD--PDFDWGGDEQRPRTPW 153 (688)
T ss_pred CCCCCcccCcCceecCcCceeecCCCcccccccccccccccccccccccccccccCceEEeC--CCCCCCCcccCCCCCc
Confidence 889999999999999999999976643211 0000 0001112455554 36999977 5556689
Q ss_pred CCeEEEEEeccCcccCCCC-CCCCCcCHHHHHhh--hHHHHHcCCCeEEECcccccCccCcccCCCCCCCcccCCCCC--
Q 003901 237 RDLIIYEVHVRGFTRHESS-KTEHPGTYLGVVEK--LDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYNYSSAGI-- 311 (788)
Q Consensus 237 ~~~viYei~v~~Ft~~~~s-~~~~~G~~~gl~~~--L~yLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~wgY~~~~~-- 311 (788)
+++||||+||++|+..+++ ....+|||+||+++ |+|||+||||+||||||+++.........+..+||||++.+|
T Consensus 154 ~d~iIYE~hvr~Ft~~~~~~~~~~~Gtf~Gi~~~~~LdyLk~LGvtaI~L~Pi~~~~~~~~~~~~~~~~ywGYd~~~y~a 233 (688)
T TIGR02100 154 EDTIIYEAHVKGFTQLHPDIPEELRGTYAGLAHPAMIDYLKKLGVTAVELLPVHAFIDDRHLLEKGLRNYWGYNTLGFFA 233 (688)
T ss_pred cccEEEEEEhHHhcCCCCCCCcccccCHHHHhccchhHHHHHcCCCEEEECCcccCCccccccccCCCCccCcCcccccc
Confidence 9999999999999985433 34578999999996 999999999999999999986543222223457799999998
Q ss_pred CCCCC---CcHHHHHHHHHHHHHcCCEEEEEeeeccccCCCCCCCccccCCCCCccceeeCCC--CCcccCCCCccccCC
Q 003901 312 RNCGH---DAINEFKLLVREAHKRGIEVVMDVVFNHTVEGNDKGPILSFRGVDNSVYYMLAPK--GEFYNYSGCGNTFNC 386 (788)
Q Consensus 312 ~~~~~---G~~~elk~lV~~aH~~Gi~VilDvV~NH~~~~~~~~~~~~~~~~~~~~yy~~~~~--g~~~~~~g~~~dln~ 386 (788)
++++| |+++|||+||++||++||+||||||+|||+.++..++...+++.++.+||+..++ +.+.++++|++++|+
T Consensus 234 ~d~~y~~~g~~~efk~LV~~~H~~GI~VIlDvV~NHt~~~~~~~~~~~~~~~d~~~yy~~~~~~~~~~~~~~g~gn~ln~ 313 (688)
T TIGR02100 234 PEPRYLASGQVAEFKTMVRALHDAGIEVILDVVYNHTAEGNELGPTLSFRGIDNASYYRLQPDDKRYYINDTGTGNTLNL 313 (688)
T ss_pred cChhhcCCCCHHHHHHHHHHHHHCCCEEEEEECcCCccCcCCCCCcccccCCCCCcceEecCCCCceecCCCCccccccC
Confidence 88899 6899999999999999999999999999999887777778888888899988765 778899999999999
Q ss_pred CCHHHHHHHHHHHHHHHHhcCccEEEEecccccccCCCccccccccCccccCCccccCCCCCChHHHHHHHcCCccccce
Q 003901 387 NHPVVRQFIVDCLRYWVTEMHVDGFRFDLASIMTRGSSLWDSVNVYGIPIEGDLLTTGTPLRSPPLIDLISNDPILRGVK 466 (788)
Q Consensus 387 ~~p~vr~~i~d~l~~W~~e~gVDGFR~D~a~~l~~~~~~w~~~~~~g~~~~~~~~~~g~~~~~~~~~~~i~~~~~~~~~~ 466 (788)
++|+||++|+++++||+++|||||||||+|..|.+...-+. ...+++++++.++++++++
T Consensus 314 ~~p~vr~~i~d~l~~W~~e~gIDGfR~D~a~~l~~~~~~~~--------------------~~~~~~~~i~~d~~~~~~~ 373 (688)
T TIGR02100 314 SHPRVLQMVMDSLRYWVTEMHVDGFRFDLATTLGRELYGFD--------------------MLSGFFTAIRQDPVLAQVK 373 (688)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCcEEEEechhhhccccCCCc--------------------ccHHHHHHHHhCcccCCeE
Confidence 99999999999999999999999999999999975321000 0235788899899999999
Q ss_pred eeeeeccCC-CcccccccCCCCcccccchhHHHHHHHHHhCCCCcHHHHHHHHhCCCCccCCCCCCCCcceeecccCCCc
Q 003901 467 LIAEAWDTG-GLYQVGIFPHWGIWSEWNGKYRDIVRQFIKGTDGFAGAFAECLCGSPNLYQGGGRKPWNSINFVCAHDGF 545 (788)
Q Consensus 467 ligE~w~~~-~~~~~~~~~~~~~~~~~n~~f~~~lr~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~p~~~vnfv~nHD~~ 545 (788)
||||.|+.+ +.++.+.|+. .+++||+.|++.+|.|++|+.+....|+..|+++..+|......|.++||||++||++
T Consensus 374 ligE~W~~~~~~~~~~~~~~--~~~~~Nd~frd~ir~f~~g~~~~~~~~~~~l~gs~~~~~~~~~~~~~~iNyv~~HD~~ 451 (688)
T TIGR02100 374 LIAEPWDIGPGGYQVGNFPP--GWAEWNDRYRDDMRRFWRGDAGMIGELANRLTGSSDLFEHNGRRPWASINFVTAHDGF 451 (688)
T ss_pred EEEeeecCCCCcccccCCCC--ceEEecHHHHHHHHHHHcCCCCcHHHHHHHHhCCHhhccccCCCcCEEEEEEeCCCCc
Confidence 999999976 5666676653 5799999999999999999998999999999999888876556789999999999999
Q ss_pred chhhhhhhcccccccCCCCCCCCCCCCCCCCcCCCCcchhHHHHHHHHHHHHHHHHHHHhcCCceEEecccccccCCCCC
Q 003901 546 SLADLVSYNQKHNLANGEDNNDGETHNNSWNCGQEGEFANILVKKLRRRQMRNFFLCLMVSQGVPMISMGDEYGHTKGGN 625 (788)
Q Consensus 546 rl~d~~~~~~~~n~~~g~~~~dg~~~~~sw~~g~~~~~~~~~~~~~~~~~~r~a~alllt~pGiP~Iy~GdE~G~~~~g~ 625 (788)
||+|+++++.|||+++|++|+||.++|+|||||.||++....+.++|.+++|+++++|||+|||||||||||+|++|.|+
T Consensus 452 tl~D~~~~~~khn~~nge~n~dg~~~N~S~n~g~eG~~~~~~~~~~r~~~~r~~~a~l~~s~GiP~i~~GdE~g~t~~G~ 531 (688)
T TIGR02100 452 TLRDLVSYNEKHNEANGENNRDGHNDNYSWNCGVEGPTDDPAINALRRRQQRNLLATLLLSQGTPMLLAGDEFGRTQQGN 531 (688)
T ss_pred hHHHHHHhhccchhhccccccccccccccccccccCCCCCHHHHHHHHHHHHHHHHHHHHcCCCceeeecHhhccCCCCC
Confidence 99999999999999999999999999999999999999998888999999999999999999999999999999999999
Q ss_pred CCCcCCCCCccccccCcccCcchHHHHHHHHHHHHHhhCccCCCCCCCCc-------cceee---ccCCCCCCCCCC-CC
Q 003901 626 NNTYCHDNDINYFRWDKKEESKSDFFRFCCLLTKFRHECESLGLSDFPTA-------DRLQW---HGHAPGLPDWSD-KS 694 (788)
Q Consensus 626 ~n~y~~~~~~~~~~W~~~~~~~~~l~~~~r~Li~lRk~~~aL~~g~~~~~-------~~~~~---~~~~~~~~~~~~-~~ 694 (788)
+|+||+++.+++|+|+..+.+ .++++|+|.||+|||+||+|+.+++... ..|+| +|..+..++|.. ..
T Consensus 532 ~n~y~~~~~~~~~dW~~~~~~-~~l~~~~k~Li~lRk~~~~l~~~~~~~~~~~~~~~~~v~~~~~~G~~~~~~~w~~~~~ 610 (688)
T TIGR02100 532 NNAYCQDNEIGWVDWSLDEGD-DELLAFTKKLIALRKAHPVLRRERFFDGRNEADGLKDVTWLNADGEPMTEEDWENPET 610 (688)
T ss_pred CCCccCCCcccccCccccccc-HHHHHHHHHHHHHHHhCchhcccccccCCcccCCCCceEEeCCCCCcCChhhcCCCCC
Confidence 999999999999999987766 8999999999999999999999987643 46899 788888888976 47
Q ss_pred cEEEEEEEcCC-------CCEEEEEEeCCCCcEEEECCCCCCCCeEEEecCCCCCCCCccCCCCchhhhhhhhcCCCCCC
Q 003901 695 RFVAFTLIDSV-------KGEIYVAFNASHLPVIISLPKRPGYRWEPLVDTSKPEPFDFLSSDLPAKEIAIKQYAPFLDA 767 (788)
Q Consensus 695 ~vlaf~r~~~~-------~~~i~Vv~N~~~~~~~v~Lp~~~g~~w~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 767 (788)
++++|.+.... .+.++|++|.+.+.+++.||..+ ..|.+++|+....+.... . ...
T Consensus 611 ~~l~~~l~~~~~~~~~~~~~~~~v~~N~~~~~~~~~lP~~~-~~w~~~~dt~~~~~~~~~--~--------------~~~ 673 (688)
T TIGR02100 611 RLLCMVLSDMDPGGDPGADDSLLLLLNAGPEPVPFKLPGGG-GRWELVLDTADEEAPGIH--L--------------DAG 673 (688)
T ss_pred CEEEEEEeCCccCCCCCCCCeEEEEECCCCCCeEEECCCCC-CcEEEEecCCCCCCcccc--c--------------cCC
Confidence 99999987532 14699999999999999999743 589999999653322110 0 124
Q ss_pred eeEEeeCCeEEEEEe
Q 003901 768 NLYPMLSYSSIILLL 782 (788)
Q Consensus 768 ~~~~v~~~s~~vl~~ 782 (788)
..+.|+|+|++||+.
T Consensus 674 ~~~~v~~~s~~vl~~ 688 (688)
T TIGR02100 674 QEAELPARSVLLLRR 688 (688)
T ss_pred CEEEEcCCEEEEEeC
Confidence 679999999999973
No 2
>PRK03705 glycogen debranching enzyme; Provisional
Probab=100.00 E-value=9.3e-110 Score=963.20 Aligned_cols=631 Identities=37% Similarity=0.686 Sum_probs=536.8
Q ss_pred ecCCCCCCCCcEEeCCcEEEEEEcCCCCEEEEEEEeCCCccCCceeeEEecccccCCCCCEEEEEEcCCCCCceeeEEEc
Q 003901 90 VSKGYPTPFGATLRDGGVNFSIFSSNAVSATLCLITLSDLQENKVTEEIALDSFANKTGDVWHVFLKGDFKDMLYGYKFD 169 (788)
Q Consensus 90 ~~~g~~~~lGa~~~~~~~~F~vwap~A~~V~L~l~~~~d~~~~~~~~~~~l~~~~~~~~gvW~~~i~~~~~~~~Y~y~~~ 169 (788)
+..|.+.||||++.+++|+|+||||+|++|+|+||+..+ . ...++|. .+++|+|+++|+++.+|.+|+|+|+
T Consensus 4 ~~~g~~~pLGa~~~~~g~~F~vwAP~A~~V~L~l~~~~~----~-~~~~~m~---~~~~gvW~~~v~~~~~G~~Y~yrv~ 75 (658)
T PRK03705 4 LAIGKPTPLGAHYDGQGVNFTLFSAHAERVELCVFDENG----Q-EQRYDLP---ARSGDIWHGYLPGARPGLRYGYRVH 75 (658)
T ss_pred cCCCCCCCcceEEeCCCEEEEEECCCCCEEEEEEEcCCC----C-eeeEeee---eccCCEEEEEECCCCCCCEEEEEEc
Confidence 567899999999999999999999999999999997532 1 2356773 4568999999999999999999999
Q ss_pred CCcCCCCCcccCCcccccCcccceeeecccccCC------CC--CCCCCCcceecccCCCCCCCCCCCCCCCCCCCCeEE
Q 003901 170 GKFSPQEGHYFDPTKIVLDPYAKAVISRAQFGVL------GP--DENCWPQMACLVPTPEDEFDWEGDLPLKYPQRDLII 241 (788)
Q Consensus 170 g~~~~~~g~~~~~~~~~~DPya~~~~~~~~~~~~------~~--~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~vi 241 (788)
|.+.|+.|++|++.++++||||+++..+..++.. .+ .+...-...+++.+ ++|+|+++.++..+++++||
T Consensus 76 g~~~p~~g~~~~~~~~~~DPYA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d--~~~~W~~~~~p~~~~~~~vI 153 (658)
T PRK03705 76 GPWQPAQGHRFNPAKLLIDPCARQVEGEVKDDPRLHGGHDEPDYRDNAAIAPKCVVVD--DHYDWEDDAPPRTPWGSTVI 153 (658)
T ss_pred cccCcccCcccCCCcEecCcCceEEccccccCccccccccCCccccccccCCceEEec--CCCCCCCCCCCCCCccccEE
Confidence 9888999999999999999999999764321110 00 01111113445544 47999998888889999999
Q ss_pred EEEeccCccc-CCCCCCCCCcCHHHHHh--hhHHHHHcCCCeEEECcccccCccCcccCCCCCCCcccCCCCC--CCCCC
Q 003901 242 YEVHVRGFTR-HESSKTEHPGTYLGVVE--KLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYNYSSAGI--RNCGH 316 (788)
Q Consensus 242 Yei~v~~Ft~-~~~s~~~~~G~~~gl~~--~L~yLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~wgY~~~~~--~~~~~ 316 (788)
||+||++|+. +..++...+|||+|+++ +|+|||+||||+||||||+++.+.......+..+||||++.+| ++++|
T Consensus 154 YE~hvr~ft~~~~~~~~~~~Gtf~g~~~~~~LdYLk~LGvt~I~L~Pv~~~~~~~~~~~~g~~~ywGYd~~~yfa~d~~y 233 (658)
T PRK03705 154 YEAHVRGLTYLHPEIPVEIRGTYAALGHPVMIAYLKQLGITALELLPVAQFASEPRLQRMGLSNYWGYNPLAMFALDPAY 233 (658)
T ss_pred EEEehhhhcccCCCCCccccccHHHhhcccchHHHHHcCCCEEEecCcccCCCcccccccccccccCccccccccccccc
Confidence 9999999997 44456678999999997 4999999999999999999987543222222457899999998 89999
Q ss_pred CcH-----HHHHHHHHHHHHcCCEEEEEeeeccccCCCCCCCccccCCCCCccceeeCCCCCcccCCCCccccCCCCHHH
Q 003901 317 DAI-----NEFKLLVREAHKRGIEVVMDVVFNHTVEGNDKGPILSFRGVDNSVYYMLAPKGEFYNYSGCGNTFNCNHPVV 391 (788)
Q Consensus 317 G~~-----~elk~lV~~aH~~Gi~VilDvV~NH~~~~~~~~~~~~~~~~~~~~yy~~~~~g~~~~~~g~~~dln~~~p~v 391 (788)
|+. +|||+||++||++||+||||||+|||+..+..++.+++++.++.+||+.+++|.+.++++|++++|+++|+|
T Consensus 234 gt~~~~~~~efk~LV~~~H~~GI~VIlDvV~NHt~~~~~~~~~~~~~~~d~~~yy~~~~~g~~~~~~g~g~~ln~~~p~V 313 (658)
T PRK03705 234 ASGPETALDEFRDAVKALHKAGIEVILDVVFNHSAELDLDGPTLSLRGIDNRSYYWIREDGDYHNWTGCGNTLNLSHPAV 313 (658)
T ss_pred CCCCcchHHHHHHHHHHHHHCCCEEEEEEcccCccCcCCCCcchhcccCCCccceEECCCCCcCCCCCccCcccCCCHHH
Confidence 984 799999999999999999999999999876666777888899999999988999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCccEEEEecccccccCCCccccccccCccccCCccccCCCCCChHHHHHHHcCCccccceeeeee
Q 003901 392 RQFIVDCLRYWVTEMHVDGFRFDLASIMTRGSSLWDSVNVYGIPIEGDLLTTGTPLRSPPLIDLISNDPILRGVKLIAEA 471 (788)
Q Consensus 392 r~~i~d~l~~W~~e~gVDGFR~D~a~~l~~~~~~w~~~~~~g~~~~~~~~~~g~~~~~~~~~~~i~~~~~~~~~~ligE~ 471 (788)
|++|+++++||+++|||||||||+|.+|.+...||.. .+++++++.+|++++++||||.
T Consensus 314 r~~iid~l~~W~~e~gVDGFRfD~a~~l~~~~~~~~~---------------------~~~~~ai~~d~vl~~~~ligE~ 372 (658)
T PRK03705 314 VDWAIDCLRYWVETCHVDGFRFDLATVLGRTPEFRQD---------------------APLFTAIQNDPVLSQVKLIAEP 372 (658)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEEcHhhhCcCcccchh---------------------hHHHHHHhhCccccceEEEEec
Confidence 9999999999999999999999999999876556543 3477888889999999999999
Q ss_pred ccCC-CcccccccCCCCcccccchhHHHHHHHHHhCCCCcHHHHHHHHhCCCCccCCCCCCCCcceeecccCCCcchhhh
Q 003901 472 WDTG-GLYQVGIFPHWGIWSEWNGKYRDIVRQFIKGTDGFAGAFAECLCGSPNLYQGGGRKPWNSINFVCAHDGFSLADL 550 (788)
Q Consensus 472 w~~~-~~~~~~~~~~~~~~~~~n~~f~~~lr~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~p~~~vnfv~nHD~~rl~d~ 550 (788)
|+.+ +.++.+.++. .+++||+.|++.+|.|+.+..+....++.+|+++..+|...+..|.++||||++||++||+|+
T Consensus 373 Wd~~~~~~~~g~~~~--~~~~~Nd~fRd~ir~f~~~~~~~~~~~~~~l~gs~~~~~~~~~~p~~siNyv~~HD~~TL~D~ 450 (658)
T PRK03705 373 WDIGPGGYQVGNFPP--PFAEWNDHFRDAARRFWLHGDLPLGEFAGRFAASSDVFKRNGRLPSASINLVTAHDGFTLRDC 450 (658)
T ss_pred ccCCCChhhhcCCCc--ceEEEchHHHHHHHHHHccCCCcHHHHHHHHhcchhhccccCCCCCeEEEEEEeCCCccHHHH
Confidence 9986 5677777764 679999999999999999888888999999999998887666789999999999999999999
Q ss_pred hhhcccccccCCCCCCCCCCCCCCCCcCCCCcchhHHHHHHHHHHHHHHHHHHHhcCCceEEecccccccCCCCCCCCcC
Q 003901 551 VSYNQKHNLANGEDNNDGETHNNSWNCGQEGEFANILVKKLRRRQMRNFFLCLMVSQGVPMISMGDEYGHTKGGNNNTYC 630 (788)
Q Consensus 551 ~~~~~~~n~~~g~~~~dg~~~~~sw~~g~~~~~~~~~~~~~~~~~~r~a~alllt~pGiP~Iy~GdE~G~~~~g~~n~y~ 630 (788)
++|+.+||.++|+.|+||.++|+|||||.||++....+.++|.+++|+++++||++|||||||+|||+|+||.|++|+||
T Consensus 451 ~~~~~~hn~~nge~n~dg~~~n~s~n~g~eg~~~~~~~~~~r~~~~r~~~a~l~~sqG~P~i~~GdE~grtq~G~nN~y~ 530 (658)
T PRK03705 451 VCFNQKHNEANGEENRDGTNNNYSNNHGKEGLGADLDLVERRRASIHALLTTLLLSQGTPMLLAGDEHGHSQHGNNNAYC 530 (658)
T ss_pred HhhhccchhhcccccccccccccccccCccCCCccHHHHHHHHHHHHHHHHHHHHcCCchHHHhhHHhccCCCCCCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCccccccCcccCcchHHHHHHHHHHHHHhhCccCCCCCCCC--ccceeec---cCCCCCCCCCCCCcEEEEEEEcCC
Q 003901 631 HDNDINYFRWDKKEESKSDFFRFCCLLTKFRHECESLGLSDFPT--ADRLQWH---GHAPGLPDWSDKSRFVAFTLIDSV 705 (788)
Q Consensus 631 ~~~~~~~~~W~~~~~~~~~l~~~~r~Li~lRk~~~aL~~g~~~~--~~~~~~~---~~~~~~~~~~~~~~vlaf~r~~~~ 705 (788)
+++.+++|+|+... .++++|+|.||+|||+||+|+..++.. ...+.|. +..+...+|.....+++|...
T Consensus 531 ~~~~i~~~dW~~~~---~~l~~f~k~Li~lRk~~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~w~~~~~~~~~~~~--- 604 (658)
T PRK03705 531 QDNALTWLDWSQAD---RGLTAFTAALIHLRQRIPALTQNRWWEEGDGNVRWLNRQAQPLSADEWQQGPKQLQILLS--- 604 (658)
T ss_pred CCCCccccccchhh---hHHHHHHHHHHHHHHhChhhcccccccCCCCCeEEeCCCCCcCChhHhCCcceEEEEEEC---
Confidence 99999999999653 799999999999999999999988732 2578885 444566677776778888764
Q ss_pred CCEEEEEEeCCCCcEEEECCCCCCCCeEEEecCCCCCCCCccCCCCchhhhhhhhcCCCCCCeeEEeeCCeEEEEEec
Q 003901 706 KGEIYVAFNASHLPVIISLPKRPGYRWEPLVDTSKPEPFDFLSSDLPAKEIAIKQYAPFLDANLYPMLSYSSIILLLS 783 (788)
Q Consensus 706 ~~~i~Vv~N~~~~~~~v~Lp~~~g~~w~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~~vl~~~ 783 (788)
+.++|++|.+..+++|+||. +.|.++++++... . + .....+.|+++|++||..+
T Consensus 605 -~~~~v~~N~~~~~~~~~lp~---~~w~~~~~~~~~~--~------~------------~~~~~~~~~~~~~~~~~~~ 658 (658)
T PRK03705 605 -DRWLIAINATLEVTEIVLPE---GEWHAIPPFAGED--N------P------------VITAVWHGPAHGVCVFQRQ 658 (658)
T ss_pred -CCEEEEECCCCCCeEEECCC---cceEEEEccCCCc--c------c------------ccCceeeecCcEEEEEecC
Confidence 46999999999999999996 2799996432210 0 0 1135578999999998754
No 3
>COG1523 PulA Type II secretory pathway, pullulanase PulA and related glycosidases [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.1e-105 Score=914.56 Aligned_cols=647 Identities=43% Similarity=0.784 Sum_probs=559.7
Q ss_pred ceecCCCCCCCCcEEe---CCcEEEEEEcCCCCEEEEEEEeCCCccCCceeeEEecccccCCCCCEEEEEEcCCCCCcee
Q 003901 88 FQVSKGYPTPFGATLR---DGGVNFSIFSSNAVSATLCLITLSDLQENKVTEEIALDSFANKTGDVWHVFLKGDFKDMLY 164 (788)
Q Consensus 88 ~~~~~g~~~~lGa~~~---~~~~~F~vwap~A~~V~L~l~~~~d~~~~~~~~~~~l~~~~~~~~gvW~~~i~~~~~~~~Y 164 (788)
..+..|.+.||||++. +.+++|++++.+|++|+||||+... .......+++ ..+.|.+|++.+|+..++..|
T Consensus 10 ~~~~~g~~~plga~~~~~~~~g~~f~l~s~~a~~v~l~l~d~~~--~~~~~~~~~~---~~~~G~iw~~~~p~~~~g~~y 84 (697)
T COG1523 10 MTLQPGKPYPLGATVIDIDGDGVNFALFSSHAERVELCLFDEAG--NTEEGRLYPY---DGELGAIWHLWLPGAKPGQVY 84 (697)
T ss_pred eeeccCCcccccceeeeccCcceEEeeeccccceEEEEecCccc--cccccccccc---CCccccEEEEEcCCCceeeEE
Confidence 6677899999999984 4999999999999999999997532 1111122555 345678999999999999999
Q ss_pred eEEEcCCcCCCCCcccCCcccccCcccceeeecccccC--C------------CC-CCCCCCcceecccCCCCCCCCCCC
Q 003901 165 GYKFDGKFSPQEGHYFDPTKIVLDPYAKAVISRAQFGV--L------------GP-DENCWPQMACLVPTPEDEFDWEGD 229 (788)
Q Consensus 165 ~y~~~g~~~~~~g~~~~~~~~~~DPya~~~~~~~~~~~--~------------~~-~~~~~~~~~~~~~~~~~~~~W~~~ 229 (788)
.|+++|.+.+..|+++++.++..||||+++.+...++. . .+ .....+...+++.. ..|+|+.+
T Consensus 85 ~yr~~g~~~~~~g~~f~~~k~l~dpya~~l~g~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~Ksvv~~--~~~~w~~~ 162 (697)
T COG1523 85 GYRVHGPYDPEEGHRFDPNKLLLDPYAKALDGDLKWGTPALFGYYYGYQITNLSPDRDSADPYPKSVVID--PLFDWEND 162 (697)
T ss_pred EEecCCCcCCccCeeeccccccccceeEEeccccccCccccccccccccccccCccccccccCCceEEec--cccccccC
Confidence 99999999999999999999999999999987765441 0 00 11112233444443 23899999
Q ss_pred CCCCCCCCCeEEEEEeccCccc-CCCCCCCCCcCHHHHHhh--hHHHHHcCCCeEEECcccccCccCcccCCCCCCCccc
Q 003901 230 LPLKYPQRDLIIYEVHVRGFTR-HESSKTEHPGTYLGVVEK--LDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYNY 306 (788)
Q Consensus 230 ~~~~~~~~~~viYei~v~~Ft~-~~~s~~~~~G~~~gl~~~--L~yLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~wgY 306 (788)
.++..||+++||||+|||+||. ++......+|||.|+++. |+|||+||||||+||||+++.........+..+||||
T Consensus 163 ~~~~~p~~~~vIYE~HVr~fT~~~~~v~~~~rGTy~gl~~~~~i~yLk~LGvtaVeLLPV~~~~~~~~l~~~gl~n~WGY 242 (697)
T COG1523 163 KPPRIPWEDTVIYEAHVRDFTQLHPGVPEELRGTYLGLAEPVIIDYLKDLGVTAVELLPVFDFYDEPHLDKSGLNNNWGY 242 (697)
T ss_pred CCCCCCccceEEEEeeecccccCCCCCchhhccceehhccccHHHHHHHhCCceEEEecceEEeccccccccccccccCC
Confidence 8888899999999999999995 555566789999999999 9999999999999999999977665555567788999
Q ss_pred CCCCC--CCCC-------CCcHHHHHHHHHHHHHcCCEEEEEeeeccccCCCCCCCccccCCCCCccceeeCCCCCcccC
Q 003901 307 SSAGI--RNCG-------HDAINEFKLLVREAHKRGIEVVMDVVFNHTVEGNDKGPILSFRGVDNSVYYMLAPKGEFYNY 377 (788)
Q Consensus 307 ~~~~~--~~~~-------~G~~~elk~lV~~aH~~Gi~VilDvV~NH~~~~~~~~~~~~~~~~~~~~yy~~~~~g~~~~~ 377 (788)
++..| ++++ -+.+.|||.||+++|++||+||||||||||++++..++.++|+++++.+||+.+++|.|.|+
T Consensus 243 dP~~fFAp~~~Yss~p~p~~~i~EfK~mV~~lHkaGI~VILDVVfNHTae~~~~g~t~~f~~id~~~Yyr~~~dg~~~N~ 322 (697)
T COG1523 243 DPLNFFAPEGRYASNPEPATRIKEFKDMVKALHKAGIEVILDVVFNHTAEGNELGPTLSFRGIDPNYYYRLDPDGYYSNG 322 (697)
T ss_pred CcccccCCCccccCCCCcchHHHHHHHHHHHHHHcCCEEEEEEeccCcccccCcCcccccccCCcCceEEECCCCCeecC
Confidence 99977 3333 34578999999999999999999999999999998999999999999999999999999999
Q ss_pred CCCccccCCCCHHHHHHHHHHHHHHHHhcCccEEEEecccccccCCCccccccccCccccCCccccCCCCCChHHHHHHH
Q 003901 378 SGCGNTFNCNHPVVRQFIVDCLRYWVTEMHVDGFRFDLASIMTRGSSLWDSVNVYGIPIEGDLLTTGTPLRSPPLIDLIS 457 (788)
Q Consensus 378 ~g~~~dln~~~p~vr~~i~d~l~~W~~e~gVDGFR~D~a~~l~~~~~~w~~~~~~g~~~~~~~~~~g~~~~~~~~~~~i~ 457 (788)
+||||++|+++|+||++|+|+|+||++||||||||||+|+.+.++... ....++++..+.
T Consensus 323 TGcGNtln~~hpmvrk~ivDsLrYWv~e~hVDGFRFDLa~~l~r~~~~--------------------~~~~~~l~~~~~ 382 (697)
T COG1523 323 TGCGNTLNTEHPMVRKLIVDSLRYWVEEYHVDGFRFDLAGVLGRETML--------------------FDINANLFLAGE 382 (697)
T ss_pred CccCcccccCChHHHHHHHHHHHHHHHHhCCCceeecchhhccccccc--------------------cccCcchhhhcc
Confidence 999999999999999999999999999999999999999999875420 112345788899
Q ss_pred cCCccccceeeeeeccCC-CcccccccCCCCcccccchhHHHHHHHHHhCCCCcHHHHHHHHhCCCCccCCCCCCCCcce
Q 003901 458 NDPILRGVKLIAEAWDTG-GLYQVGIFPHWGIWSEWNGKYRDIVRQFIKGTDGFAGAFAECLCGSPNLYQGGGRKPWNSI 536 (788)
Q Consensus 458 ~~~~~~~~~ligE~w~~~-~~~~~~~~~~~~~~~~~n~~f~~~lr~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~p~~~v 536 (788)
.+|++..+++|||.||.+ +.+++|.||....|++||+.|++.+|.|++|+.+..+.|+..+.|++++|...++.|.++|
T Consensus 383 ~~p~l~~~kliAepwD~g~~gyqvG~Fpd~~~~aewng~~rD~vr~F~~G~~~~~~~~a~rl~gS~d~~~~~~~~p~~sI 462 (697)
T COG1523 383 GDPVLSGVKLIAEPWDIGPGGYQVGNFPDSPRWAEWNGRFRDDVRRFWRGDAGLVGEFAKRLAGSSDLYKRNGRRPSQSI 462 (697)
T ss_pred CCccccCceeeecchhhcCCCcccccCCCccchhhhCCcccccccceeeCCCccHHHHHHHhhcCcchhhccCCCcccee
Confidence 999999999999999988 7899999996668999999999999999999999999999999999999988889999999
Q ss_pred eecccCCCcchhhhhhhcccccccCCCCCCCCCCCCCCCCcCCCCcchhHHHHHHHHHHHHHHHHHHHhcCCceEEeccc
Q 003901 537 NFVCAHDGFSLADLVSYNQKHNLANGEDNNDGETHNNSWNCGQEGEFANILVKKLRRRQMRNFFLCLMVSQGVPMISMGD 616 (788)
Q Consensus 537 nfv~nHD~~rl~d~~~~~~~~n~~~g~~~~dg~~~~~sw~~g~~~~~~~~~~~~~~~~~~r~a~alllt~pGiP~Iy~Gd 616 (788)
|||++||++||+|+++|+.|||.++|+.|+||.++|++||||.++++..+.+...|.++.+++++.||+++|+||+-+||
T Consensus 463 Nyv~aHDgfTL~D~vsy~~khneange~nrdg~~~n~s~N~g~eg~t~~p~i~~~re~~~~~~~~tlllsqG~pml~~gD 542 (697)
T COG1523 463 NYVTAHDGFTLWDLVSYNHKHNEANGENNRDGHNDNYSWNHGVEGPTGDPFIHAGRERQRTNLLATLLLSQGTPMLLAGD 542 (697)
T ss_pred eEEeecCCCcHhHhhhhccCCChhhcchhhhhhhhhhccccccccCCCCHHHHHhHHHHHHHHHHHHHhhcCCccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCCCCcCCCCCccccccCcccCcchHHHHHHHHHHHHHhhCccCCCCCCCCc----ccee---eccCCCCCCC
Q 003901 617 EYGHTKGGNNNTYCHDNDINYFRWDKKEESKSDFFRFCCLLTKFRHECESLGLSDFPTA----DRLQ---WHGHAPGLPD 689 (788)
Q Consensus 617 E~G~~~~g~~n~y~~~~~~~~~~W~~~~~~~~~l~~~~r~Li~lRk~~~aL~~g~~~~~----~~~~---~~~~~~~~~~ 689 (788)
|+|+++.||+|+||+++++||+||+. +.+ .++++|++.||+|||+||+|+...+..+ .+|. |+|..+...+
T Consensus 543 e~~rtq~gnnNsYcqdn~inwlDW~~-~~~-~~l~~f~~~lIaLRk~~~af~~~~f~~~~~~~~~i~~~~~~g~~~~~~~ 620 (697)
T COG1523 543 EFGRTQYGNNNAYCQDNEINWLDWST-EAN-NDLVEFTKGLIALRKAHPAFRRRSFFEGKRGVKDITWLNWNGIPLTQDD 620 (697)
T ss_pred ccccccccccccccCCcccceeccCc-ccc-HHHHHHHHHHHHHhhhcchhcccchhhccCCCcccceeccCCeeechhc
Confidence 99999999999999999999999993 333 8999999999999999999999887764 5676 4677777777
Q ss_pred CCCC-CcEEEEEEEcCCCCEEEEEEeCCCCcEEEECCCCCCCCeEEEecCCCCCCCCccCCCCchhhhhhhhcCCCCCCe
Q 003901 690 WSDK-SRFVAFTLIDSVKGEIYVAFNASHLPVIISLPKRPGYRWEPLVDTSKPEPFDFLSSDLPAKEIAIKQYAPFLDAN 768 (788)
Q Consensus 690 ~~~~-~~vlaf~r~~~~~~~i~Vv~N~~~~~~~v~Lp~~~g~~w~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 768 (788)
|... ...+++..... .++++|++|...+.+.+.||... ..|..++++.......+ .
T Consensus 621 w~~~~~~~l~~~l~~~-~~~~lv~~N~~~~~~~~~lp~~~-~~~~~~~~~~~~~~~~~---------------------~ 677 (697)
T COG1523 621 WNNGFTGALAVVLDGD-KERLLVLINATAEPVEFELPEDE-GKWAGLVDTSTPPGFDI---------------------R 677 (697)
T ss_pred ccCCCCceEEEEecCC-CccEEEEecCCccccceeccccc-CcceeeecccCCCCccc---------------------c
Confidence 8776 77888877664 37899999999999999999865 57999998765432111 1
Q ss_pred eEEeeCCeEEEEEecCCC
Q 003901 769 LYPMLSYSSIILLLSPDE 786 (788)
Q Consensus 769 ~~~v~~~s~~vl~~~~~~ 786 (788)
.+++++.|+.||...+++
T Consensus 678 ~~~~~~~s~~vl~~~~~~ 695 (697)
T COG1523 678 EVSLPGRSVLVLTRRSEV 695 (697)
T ss_pred eeecCCcEEEEEeecccc
Confidence 578999999999987754
No 4
>PRK14510 putative bifunctional 4-alpha-glucanotransferase/glycogen debranching enzyme; Provisional
Probab=100.00 E-value=1.1e-97 Score=912.45 Aligned_cols=604 Identities=37% Similarity=0.661 Sum_probs=515.8
Q ss_pred ceecCCCCCCCCcEEeCCcEEEEEEcCCCCEEEEEEEeCCCccCCceeeEEecccccCCCCCEEEEEEcCCCCCceeeEE
Q 003901 88 FQVSKGYPTPFGATLRDGGVNFSIFSSNAVSATLCLITLSDLQENKVTEEIALDSFANKTGDVWHVFLKGDFKDMLYGYK 167 (788)
Q Consensus 88 ~~~~~g~~~~lGa~~~~~~~~F~vwap~A~~V~L~l~~~~d~~~~~~~~~~~l~~~~~~~~gvW~~~i~~~~~~~~Y~y~ 167 (788)
.....|++.||||++.++||+|+||||+|++|+||||+..+ .....+++| ..+++|+|+++|++..+|.+|+|+
T Consensus 6 ~~~~~g~~~plGA~~~~~gv~F~v~ap~A~~V~L~lf~~~~---~~~~~~~~l---~~~~g~vW~~~i~~~~~g~~Ygyr 79 (1221)
T PRK14510 6 NSVSPGFREPLGAVPDGGGVNLALFSGAAERVEFCLFDLWG---VREEARIKL---PGRTGDVWHGFIVGVGPGARYGNR 79 (1221)
T ss_pred cccCCCCCCCCceEEECCeEEEEEECCCCCEEEEEEEECCC---CCeeEEEEC---CCCcCCEEEEEEccCCCCcEEEEE
Confidence 34567999999999999999999999999999999997532 122345666 346789999999999999999999
Q ss_pred EcCCcCCCCCcccCCcccccCcccceeeecccccC-CCCCC----------CCCCcceecccCCCCCCCCCCCCCCCCCC
Q 003901 168 FDGKFSPQEGHYFDPTKIVLDPYAKAVISRAQFGV-LGPDE----------NCWPQMACLVPTPEDEFDWEGDLPLKYPQ 236 (788)
Q Consensus 168 ~~g~~~~~~g~~~~~~~~~~DPya~~~~~~~~~~~-~~~~~----------~~~~~~~~~~~~~~~~~~W~~~~~~~~~~ 236 (788)
++|...++.|.++++.++++||||+++..+..++. +.+.+ ...-..++++. ++|+|.++.++..+|
T Consensus 80 v~g~~~p~~g~rf~p~~~~lDPYA~~~~~~~~~~~~i~~~~~~~~~~~~~d~~~~~pk~vv~---~~~~W~~~~~~~~~~ 156 (1221)
T PRK14510 80 QEGPGGPGEGHRFNPPKLLVDPYARPLDRPFWLHQAIFDDRFFNGDEDLTDSAVLVPKVVVP---TPFTWAPRSPLHGDW 156 (1221)
T ss_pred eccCCCcccccccCCCeEeeCCCCceEeCCcccCcccccccccCCCcccccCcccCccceee---cccccCCCCCCCCCc
Confidence 99988889999999999999999999986543211 11110 00001122332 279999888888899
Q ss_pred CCeEEEEEeccCccc-CCCCCCCCCcCHHHHH--hhhHHHHHcCCCeEEECcccccCccCcccCCCCCCCcccCCCCC--
Q 003901 237 RDLIIYEVHVRGFTR-HESSKTEHPGTYLGVV--EKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYNYSSAGI-- 311 (788)
Q Consensus 237 ~~~viYei~v~~Ft~-~~~s~~~~~G~~~gl~--~~L~yLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~wgY~~~~~-- 311 (788)
+++||||+||++|+. ++..+.+..|+|++|. ++|+|||+||||+||||||+++.........+..+||||++.+|
T Consensus 157 ~d~vIYE~hvr~ft~~~~~~gg~~~Gt~~~l~~~~~i~yLk~LGvt~I~L~Pi~~~~~~~~~~~~g~~~yWGY~~~~yfa 236 (1221)
T PRK14510 157 DDSPLYEMNVRGFTLRHDFFPGNLRGTFAKLAAPEAISYLKKLGVSIVELNPIFASVDEHHLPQLGLSNYWGYNTVAFLA 236 (1221)
T ss_pred ccCeEEEEccchhhccCCCCCcccCcHHhhcCCchhHHHHHHcCCCEEEeCCccccCcccccccccCcCcCCCCCCCCCC
Confidence 999999999999997 4556677889999999 67999999999999999999987654333344678999999999
Q ss_pred CCCCCC--cHHHHHHHHHHHHHcCCEEEEEeeeccccCCCCCCCccccCCCCCccceeeCC--CCCcccCCCCccccCCC
Q 003901 312 RNCGHD--AINEFKLLVREAHKRGIEVVMDVVFNHTVEGNDKGPILSFRGVDNSVYYMLAP--KGEFYNYSGCGNTFNCN 387 (788)
Q Consensus 312 ~~~~~G--~~~elk~lV~~aH~~Gi~VilDvV~NH~~~~~~~~~~~~~~~~~~~~yy~~~~--~g~~~~~~g~~~dln~~ 387 (788)
++++|| +++|||+||++||++||+||||||||||+.++..++.+++++.+++.||+..+ .+.|.+++||++.+|++
T Consensus 237 ~dp~yg~~~~~efk~lV~~~H~~GI~VILDvV~NHt~~~~~~~p~~~~~~~d~~~yy~~~~~~~~~y~~~~G~gn~~n~~ 316 (1221)
T PRK14510 237 PDPRLAPGGEEEFAQAIKEAQSAGIAVILDVVFNHTGESNHYGPTLSAYGSDNSPYYRLEPGNPKEYENWWGCGNLPNLE 316 (1221)
T ss_pred cChhhccCcHHHHHHHHHHHHHCCCEEEEEEccccccCCCCCCCcccccCCCCCCceEecCCCCCcccCCCCCCCccccC
Confidence 899999 99999999999999999999999999999998888888888999999998763 46788999999999999
Q ss_pred CHHHHHHHHHHHHHHHHhcCccEEEEecccccccC-CCccccccccCccccCCccccCCCCCChHHHHHHHcCCccccce
Q 003901 388 HPVVRQFIVDCLRYWVTEMHVDGFRFDLASIMTRG-SSLWDSVNVYGIPIEGDLLTTGTPLRSPPLIDLISNDPILRGVK 466 (788)
Q Consensus 388 ~p~vr~~i~d~l~~W~~e~gVDGFR~D~a~~l~~~-~~~w~~~~~~g~~~~~~~~~~g~~~~~~~~~~~i~~~~~~~~~~ 466 (788)
+|+|+++|+++++||++ |||||||||+|+++.+. .+||+.+ .+.++++..++++.+++
T Consensus 317 ~p~v~~~i~d~lr~Wv~-~gVDGfRfDla~~l~r~~~~f~~~~--------------------~~~l~ai~~d~~l~~~~ 375 (1221)
T PRK14510 317 RPFILRLPMDVLRSWAK-RGVDGFRLDLADELAREPDGFIDEF--------------------RQFLKAMDQDPVLRRLK 375 (1221)
T ss_pred CHHHHHHHHHHHHHHHH-hCCCEEEEechhhhccCccchHHHH--------------------HHHHHHhCCCcCcccCc
Confidence 99999999999999997 99999999999999543 2566652 23567777888888999
Q ss_pred eeeeeccCC-CcccccccCCCCcccccchhHHHHHHHHHhCCCCcHHHHHHHHhCCCCccCCCCCCCCcceeecccCCCc
Q 003901 467 LIAEAWDTG-GLYQVGIFPHWGIWSEWNGKYRDIVRQFIKGTDGFAGAFAECLCGSPNLYQGGGRKPWNSINFVCAHDGF 545 (788)
Q Consensus 467 ligE~w~~~-~~~~~~~~~~~~~~~~~n~~f~~~lr~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~p~~~vnfv~nHD~~ 545 (788)
+|||.|+.+ +.++.+.|+.. +++||+.|++.+|.|++|+.+....|+..+.++.+.|+.....+..+||||+|||++
T Consensus 376 ligE~Wd~~~~~~~~g~f~~~--~~~~N~~frd~vr~f~~g~~~~~~~~a~~l~gs~d~~~~~~~~~~~~iNfi~~HD~~ 453 (1221)
T PRK14510 376 MIAEVWDDGLGGYQYGKFPQY--WGEWNDPLRDIMRRFWLGDIGMAGELATRLAGSADIFPHRRRNFSRSINFITAHDGF 453 (1221)
T ss_pred EEEecccCCCCccccCCCCcc--eeeeccHHHHHHHHHhcCCCchHHHHHHHHhCcHhhcCccCCCcccceEEEeeCCch
Confidence 999999976 55777887753 789999999999999999988889999999999988876567789999999999999
Q ss_pred chhhhhhhcccccccCCCCCCCCCCCCCCCCcCCCCcchhHHHHHHHHHHHHHHHHHHHhcCCceEEecccccccCCCCC
Q 003901 546 SLADLVSYNQKHNLANGEDNNDGETHNNSWNCGQEGEFANILVKKLRRRQMRNFFLCLMVSQGVPMISMGDEYGHTKGGN 625 (788)
Q Consensus 546 rl~d~~~~~~~~n~~~g~~~~dg~~~~~sw~~g~~~~~~~~~~~~~~~~~~r~a~alllt~pGiP~Iy~GdE~G~~~~g~ 625 (788)
||.|+++|+.|||.+|||+|+||.++|.|||||.+|++.+..+..++.+++|+++++|||+|||||||||||+|+++.||
T Consensus 454 rl~dl~~y~~khN~ange~nrdg~~~n~s~n~g~eg~t~~~~~~~~r~~~~r~a~~~l~~s~GiP~Iy~GdE~g~tq~Gn 533 (1221)
T PRK14510 454 TLLDLVSFNHKHNEANGEDNRDGTPDNQSWNCGVEGYTLDAAIRSLRRRRLRLLLLTLMSFPGVPMLYYGDEAGRSQNGN 533 (1221)
T ss_pred HHHHHhhhccccchhccccccCCCCccccccccccCCCCchHHHHHHHHHHHHHHHHHHhCCCCcEEecchhcccccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcCCCCCccccccCcccCcchHHHHHHHHHHHHHhhCccCCCCCCCCc--------cceeec---cCCCCCCCCCCC-
Q 003901 626 NNTYCHDNDINYFRWDKKEESKSDFFRFCCLLTKFRHECESLGLSDFPTA--------DRLQWH---GHAPGLPDWSDK- 693 (788)
Q Consensus 626 ~n~y~~~~~~~~~~W~~~~~~~~~l~~~~r~Li~lRk~~~aL~~g~~~~~--------~~~~~~---~~~~~~~~~~~~- 693 (788)
+|+||+++.+++|+|+..+ .++++|+|+||+|||+||+|+.+++... .+|.|+ |..+..++|.+.
T Consensus 534 ~n~y~~~~~r~~~~W~~~~---~~l~~f~k~Li~lRk~~~~L~~g~~~~~~~~~~~~~~dv~w~~~~g~~~~~~~w~~~~ 610 (1221)
T PRK14510 534 NNGYAQDNNRGTYPWGNED---EELLSFFRRLIKLRREYGVLRQGEFSSGTPVDASGGKDVEWLRRKGEQNQDRFWDKRS 610 (1221)
T ss_pred CCCCCCCCccccCCccccc---HHHHHHHHHHHHHHHhChhhccCccccCcccccCCCCCEEEECCCCCcCChhhcCCCC
Confidence 9999999999999998753 6899999999999999999999998753 478895 455555667653
Q ss_pred CcEEEEEEEcCC-----CCEEEEEEeCCCCcEEEECCC
Q 003901 694 SRFVAFTLIDSV-----KGEIYVAFNASHLPVIISLPK 726 (788)
Q Consensus 694 ~~vlaf~r~~~~-----~~~i~Vv~N~~~~~~~v~Lp~ 726 (788)
.+.+++...... .+.++|++|++.++++|.||.
T Consensus 611 ~~~~~~~~~~~~~~~~~~~~~~v~~N~~~~~~~~~lP~ 648 (1221)
T PRK14510 611 TEALVAVLNRPAGERQVDDRFAVLLNSHHEELTLHLPE 648 (1221)
T ss_pred CCEEEEEEecCCCCCCCCCeEEEEECCCCCCeEEECCh
Confidence 667777665432 247999999999999999996
No 5
>TIGR02104 pulA_typeI pullulanase, type I. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family consists of pullulanases related to the subfamilies described in TIGR02102 and TIGR02103 but having a different domain architecture with shorter sequences. Members are called type I pullulanases.
Probab=100.00 E-value=1.6e-87 Score=783.04 Aligned_cols=553 Identities=28% Similarity=0.475 Sum_probs=430.4
Q ss_pred cccceecCCCCCCCCcEEeCCcEEEEEEcCCCCEEEEEEEeCCCccCCceeeEEecccccCCCCCEEEEEEcCCCCCcee
Q 003901 85 SQRFQVSKGYPTPFGATLRDGGVNFSIFSSNAVSATLCLITLSDLQENKVTEEIALDSFANKTGDVWHVFLKGDFKDMLY 164 (788)
Q Consensus 85 ~~~~~~~~g~~~~lGa~~~~~~~~F~vwap~A~~V~L~l~~~~d~~~~~~~~~~~l~~~~~~~~gvW~~~i~~~~~~~~Y 164 (788)
|++...|.| ||||++.+++|+|+||||+|++|+|++|...+ ...+...++|.+ ..+|+|+++|+++.+|.+|
T Consensus 2 ~~~~~~~~~---~lG~~~~~~~~~F~vwaP~a~~V~l~~~~~~~--~~~~~~~~~m~~---~~~gvw~~~i~~~~~g~~Y 73 (605)
T TIGR02104 2 FDDKFYYDG---ELGAVYTPEKTVFRVWAPTATEVELLLYKSGE--DGEPYKVVKMKR---GENGVWSAVLEGDLHGYFY 73 (605)
T ss_pred cccccCCCC---CCccEEECCeeEEEEECCCCCEEEEEEEcCCC--CCccceEEeccc---CCCCEEEEEECCCCCCCEE
Confidence 556666666 79999999999999999999999999987532 112234678854 4679999999999999999
Q ss_pred eEEEcCCcCCCCCcccCCcccccCcccceeeecccccCCCCCCCCCCcceecccCC--CCCCCCCCCC-CCCCCCCCeEE
Q 003901 165 GYKFDGKFSPQEGHYFDPTKIVLDPYAKAVISRAQFGVLGPDENCWPQMACLVPTP--EDEFDWEGDL-PLKYPQRDLII 241 (788)
Q Consensus 165 ~y~~~g~~~~~~g~~~~~~~~~~DPya~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~W~~~~-~~~~~~~~~vi 241 (788)
+|+|++. | ...+++||||+++..++..+ +|.+. ...++|..+. ++..+++++||
T Consensus 74 ~y~v~~~-----~----~~~~~~DPya~~~~~~~~~s--------------~v~d~~~~~~~~w~~~~~~~~~~~~~~vI 130 (605)
T TIGR02104 74 TYQVCIN-----G----KWRETVDPYAKAVTVNGKRG--------------AVIDLERTNPEGWEKDHRPRLENPEDAII 130 (605)
T ss_pred EEEEEcC-----C----CeEEEcCCCcceeccCCCcE--------------EEEcccccCccCcccccCCCCCChhHcEE
Confidence 9999752 1 12468999999986544332 33221 1356888775 66678899999
Q ss_pred EEEeccCcccCCCCCCCCCcCHHHHHhh-----------hHHHHHcCCCeEEECcccccCccCcccCCCCCCC-cccCCC
Q 003901 242 YEVHVRGFTRHESSKTEHPGTYLGVVEK-----------LDHLKDLGINCLELMPCHEFNELEYFSYNSVLGD-YNYSSA 309 (788)
Q Consensus 242 Yei~v~~Ft~~~~s~~~~~G~~~gl~~~-----------L~yLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~-wgY~~~ 309 (788)
||+||++|+.+++++...+|||.|++++ |+|||+||||+||||||+++.+...... ..++ |||++.
T Consensus 131 YElhv~~ft~~~~~~~~~~G~f~~~~e~~~~~~~g~~~~LdyL~~LGvt~I~L~Pi~~~~~~~~~~~--~~~~~wGY~~~ 208 (605)
T TIGR02104 131 YELHIRDFSIHENSGVKNKGKYLGLTETGTKGPNGVSTGLDYLKELGVTHVQLLPVFDFAGVDEEDP--NNAYNWGYDPL 208 (605)
T ss_pred EEEecchhccCCCCCcCCCCceeeeeccCccccccchhHHHHHHHcCCCEEEeCCcccccccccccC--CCCCCCCCCCc
Confidence 9999999999887777778999999876 9999999999999999999875432211 2223 999999
Q ss_pred CC--CCCCCCc--------HHHHHHHHHHHHHcCCEEEEEeeeccccCCCCCCCccccCCCCCccceeeCCCCCcccCCC
Q 003901 310 GI--RNCGHDA--------INEFKLLVREAHKRGIEVVMDVVFNHTVEGNDKGPILSFRGVDNSVYYMLAPKGEFYNYSG 379 (788)
Q Consensus 310 ~~--~~~~~G~--------~~elk~lV~~aH~~Gi~VilDvV~NH~~~~~~~~~~~~~~~~~~~~yy~~~~~g~~~~~~g 379 (788)
+| ++++||+ ++|||+||++||++||+||||||+||++.... ..|++..+.+||+.++.|.+.++++
T Consensus 209 ~y~~~~~~y~~~p~~~~~~~~efk~lV~~~H~~Gi~VilDvV~NH~~~~~~----~~f~~~~~~~~~~~~~~g~~~~~~g 284 (605)
T TIGR02104 209 NYNVPEGSYSTNPYDPATRIRELKQMIQALHENGIRVIMDVVYNHTYSREE----SPFEKTVPGYYYRYNEDGTLSNGTG 284 (605)
T ss_pred cCCCcChhhhcCCCccchHHHHHHHHHHHHHHCCCEEEEEEEcCCccCCCC----CcccCCCCCeeEEECCCCCccCCCc
Confidence 88 5556665 69999999999999999999999999985421 2456666677788888899999999
Q ss_pred CccccCCCCHHHHHHHHHHHHHHHHhcCccEEEEecccccccCCCccccccccCccccCCccccCCCCCChHHHHHHHcC
Q 003901 380 CGNTFNCNHPVVRQFIVDCLRYWVTEMHVDGFRFDLASIMTRGSSLWDSVNVYGIPIEGDLLTTGTPLRSPPLIDLISND 459 (788)
Q Consensus 380 ~~~dln~~~p~vr~~i~d~l~~W~~e~gVDGFR~D~a~~l~~~~~~w~~~~~~g~~~~~~~~~~g~~~~~~~~~~~i~~~ 459 (788)
|++++|+++|+||++|++++++|+++|||||||||+|++++. +||+. +.+.+ +
T Consensus 285 ~~~~~~~~~~~v~~~i~~~~~~W~~e~~iDGfR~D~~~~~~~--~~~~~-----------------------~~~~~--~ 337 (605)
T TIGR02104 285 VGNDTASEREMMRKFIVDSVLYWVKEYNIDGFRFDLMGIHDI--ETMNE-----------------------IRKAL--N 337 (605)
T ss_pred ccCCcccCCHHHHHHHHHHHHHHHHHcCCCEEEEechhcCCH--HHHHH-----------------------HHHHH--H
Confidence 999999999999999999999999999999999999988864 34443 23333 2
Q ss_pred CccccceeeeeeccCCCcccc------cccCCCCcccccchhHHHHHH---------HHHhCCCCcHHHHHHHHhCCCCc
Q 003901 460 PILRGVKLIAEAWDTGGLYQV------GIFPHWGIWSEWNGKYRDIVR---------QFIKGTDGFAGAFAECLCGSPNL 524 (788)
Q Consensus 460 ~~~~~~~ligE~w~~~~~~~~------~~~~~~~~~~~~n~~f~~~lr---------~~~~g~~~~~~~~~~~l~~~~~~ 524 (788)
+..|++++|||.|+.+..... ........++.||+.|++.++ .|++|..+....++..+.++...
T Consensus 338 ~~~p~~~ligE~w~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~rd~i~~~~~~~~~~~f~~g~~~~~~~l~~~l~~~~~~ 417 (605)
T TIGR02104 338 KIDPNILLYGEGWDLGTPLPPEQKATKANAYQMPGIAFFNDEFRDALKGSVFHLKKKGFVSGNPGTEETVKKGILGSIEL 417 (605)
T ss_pred hhCCCeEEEEccCCCCCCcchhhhhhhhccCCCCceEEECCcchhhhcCCccccccCceecCCCCcHHHHHhheeCChhh
Confidence 356799999999987631111 111122347889999999998 45555545566777777776443
Q ss_pred c--CCCCCCCCcceeecccCCCcchhhhhhhcccccccCCCCCCCCCCCCCCCCcCCCCcchhHHHHHHHHHHHHHHHHH
Q 003901 525 Y--QGGGRKPWNSINFVCAHDGFSLADLVSYNQKHNLANGEDNNDGETHNNSWNCGQEGEFANILVKKLRRRQMRNFFLC 602 (788)
Q Consensus 525 ~--~~~~~~p~~~vnfv~nHD~~rl~d~~~~~~~~n~~~g~~~~dg~~~~~sw~~g~~~~~~~~~~~~~~~~~~r~a~al 602 (788)
+ ......|.++|||++|||+.|++|++.+..+ +. ....+.+++|+++++
T Consensus 418 ~~~~~~~~~p~~~vnyl~~HD~~~l~d~l~~~~~------~~-----------------------~~~~~~~r~rla~al 468 (605)
T TIGR02104 418 DAVKPSALDPSQSINYVECHDNHTLWDKLSLANP------DE-----------------------TEEQLKKRQKLATAI 468 (605)
T ss_pred cccccccCChhheEEEEEecCCCCHHHHHHhhCC------CC-----------------------CHHHHHHHHHHHHHH
Confidence 3 1123578899999999999999999875321 00 013457789999999
Q ss_pred HHhcCCceEEecccccccCCCCCCCCcCCCCCccccccCcccCcchHHHHHHHHHHHHHhhCccCCCCCCCCccceeecc
Q 003901 603 LMVSQGVPMISMGDEYGHTKGGNNNTYCHDNDINYFRWDKKEESKSDFFRFCCLLTKFRHECESLGLSDFPTADRLQWHG 682 (788)
Q Consensus 603 llt~pGiP~Iy~GdE~G~~~~g~~n~y~~~~~~~~~~W~~~~~~~~~l~~~~r~Li~lRk~~~aL~~g~~~~~~~~~~~~ 682 (788)
+||+|||||||||||+|+++.+++|+||+++.+++|+|+..+.. .++++++|+||+|||++|+|+.+++.. +.+|.
T Consensus 469 llts~GiP~iy~GdE~g~s~~g~~n~y~~~d~~~~ldW~~~~~~-~~~~~~~~~Li~lRk~~pal~~~~~~~---i~~~~ 544 (605)
T TIGR02104 469 LLLSQGIPFLHAGQEFMRTKQGDENSYNSPDSINQLDWDRKATF-KDDVNYIKGLIALRKAHPAFRLSSAED---IRKHL 544 (605)
T ss_pred HHHcCCCceeecchhhhccCCCCCCCccCCCcccccCccccccc-hHHHHHHHHHHHHHhhCccccCCChhh---hccee
Confidence 99999999999999999999999999999999999999987665 789999999999999999999987643 34443
Q ss_pred CCCCCCCCCCCCcEEEEEEEcCCC----CEEEEEEeCCCCcEEEECCCCCCCCeEEEecCCC
Q 003901 683 HAPGLPDWSDKSRFVAFTLIDSVK----GEIYVAFNASHLPVIISLPKRPGYRWEPLVDTSK 740 (788)
Q Consensus 683 ~~~~~~~~~~~~~vlaf~r~~~~~----~~i~Vv~N~~~~~~~v~Lp~~~g~~w~~l~d~~~ 740 (788)
... ...++++++|.|..... +.++|++|++++++++.||.. +.|+.++++..
T Consensus 545 ~~~----~~~~~~vla~~r~~~~~~~~~~~llVv~N~s~~~~~v~lp~~--~~w~~~~~~~~ 600 (605)
T TIGR02104 545 EFL----PAEPSGVIAYRLKDHANGDPWKDIIVIHNANPEPVDIQLPSD--GTWNVVVDNKN 600 (605)
T ss_pred EEc----cCCCCcEEEEEEeCCcCCCCcCeEEEEEeCCCCCeEEECCCC--CCEEEEECCCc
Confidence 321 11346899999986432 479999999999999999853 48999998854
No 6
>TIGR02102 pullulan_Gpos pullulanase, extracellular, Gram-positive. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. In contrast, a glycogen debranching enzyme such GlgX, homologous to this family, can release glucose at alpha,1-6 linkages from glycogen first subjected to limit degradation by phosphorylase. Characterized members of this family include a surface-located pullulanase from Streptococcus pneumoniae (PubMed:11083842) and an extracellular bifunctional amylase/pullulanase with C-terminal pullulanase activity (PubMed:8798645).
Probab=100.00 E-value=8.3e-86 Score=787.49 Aligned_cols=604 Identities=24% Similarity=0.390 Sum_probs=436.9
Q ss_pred ccccceecCCCCCCCCcEEeCCc-EEEEEEcCCCCEEEEEEEeCCCccCCceeeEEecccccCCCCCEEEEEEcC-----
Q 003901 84 QSQRFQVSKGYPTPFGATLRDGG-VNFSIFSSNAVSATLCLITLSDLQENKVTEEIALDSFANKTGDVWHVFLKG----- 157 (788)
Q Consensus 84 ~~~~~~~~~g~~~~lGa~~~~~~-~~F~vwap~A~~V~L~l~~~~d~~~~~~~~~~~l~~~~~~~~gvW~~~i~~----- 157 (788)
.++..+.+. .+|||++.+++ ++|+||||+|++|+|+||+.++.. .....++|.+ ..+|+|+++|++
T Consensus 308 ~~d~~y~y~---g~LGa~~~~~g~v~F~vWAP~A~~V~L~lyd~~~~~--~~~~~~~m~~---~~~GvW~v~v~~~~~G~ 379 (1111)
T TIGR02102 308 LKDEMYAYD---GKLGAQLHEDGTVTLKLWSPSADHVSVVLYDKDDQD--KVVGTVELKK---GDRGVWEVQLTKENTGI 379 (1111)
T ss_pred hhhhhhccC---CCCCCEEecCCCEEEEEECCCCCEEEEEEEeCCCCC--CceeeEeccc---CCCCEEEEEECCcccCc
Confidence 344444444 47999998776 899999999999999999864321 2234678853 568999999995
Q ss_pred -CCCCceeeEEEcCCcCCCCCcccCCcccccCcccceeee-cccccCCCCCCCCCCcceecccCC----CCCCCCCCCCC
Q 003901 158 -DFKDMLYGYKFDGKFSPQEGHYFDPTKIVLDPYAKAVIS-RAQFGVLGPDENCWPQMACLVPTP----EDEFDWEGDLP 231 (788)
Q Consensus 158 -~~~~~~Y~y~~~g~~~~~~g~~~~~~~~~~DPya~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~W~~~~~ 231 (788)
+++|++|+|+|.+. +..++++||||+++.. ++... ........+++.+. ...++|.+ .+
T Consensus 380 ~d~~G~~Y~Y~V~~~---------~~~~~~~DPYA~al~~~n~~~~-----~~~~~~~ks~vvD~~~~~p~~~~~~~-~~ 444 (1111)
T TIGR02102 380 DSLTGYYYHYEITRG---------GDKVLALDPYAKSLAAWNDATS-----DDQIKVAKAAFVDPSSLGPQELDFAK-IE 444 (1111)
T ss_pred ccCCCceEEEEEECC---------CceEEEeChhheEEeccCcccc-----cccCCCCceEEEcCcccCcccccccc-cc
Confidence 56899999999853 2345789999999964 21110 00000112343332 12467774 34
Q ss_pred CCCCCCCeEEEEEeccCcccCCCCCCC---CCcCHHHHHhhhHHHHHcCCCeEEECcccccCccCccc-------C-CCC
Q 003901 232 LKYPQRDLIIYEVHVRGFTRHESSKTE---HPGTYLGVVEKLDHLKDLGINCLELMPCHEFNELEYFS-------Y-NSV 300 (788)
Q Consensus 232 ~~~~~~~~viYei~v~~Ft~~~~s~~~---~~G~~~gl~~~L~yLk~LGvt~I~L~Pi~~~~~~~~~~-------~-~~~ 300 (788)
...+++++||||+|||+|+.+.+++.. ..|||+||+++|+|||+|||||||||||+++...+... + ...
T Consensus 445 ~~~~~~d~vIYElHVrdFt~d~~~~~~~~~~~Gtf~gl~ekLdYLkeLGVT~I~LmPv~d~~~~~e~~~~~~~~~~~~~~ 524 (1111)
T TIGR02102 445 NFKKREDAIIYEAHVRDFTSDPAIAGDLTAQFGTFAAFVEKLDYLQDLGVTHIQLLPVLSYFFVNEFKNKERMLDYASSN 524 (1111)
T ss_pred ccCCccceEEEEEechhhCcCCCCCcccccCCcCHHHHHHhHHHHHHcCCCEEEEcCccccccccccccccccccccccc
Confidence 455689999999999999976555543 47999999999999999999999999999864332111 1 012
Q ss_pred CCC-cccCCCCC--CCCCCCc--------HHHHHHHHHHHHHcCCEEEEEeeeccccCCCCCCCccccCCCCCccceeeC
Q 003901 301 LGD-YNYSSAGI--RNCGHDA--------INEFKLLVREAHKRGIEVVMDVVFNHTVEGNDKGPILSFRGVDNSVYYMLA 369 (788)
Q Consensus 301 ~~~-wgY~~~~~--~~~~~G~--------~~elk~lV~~aH~~Gi~VilDvV~NH~~~~~~~~~~~~~~~~~~~~yy~~~ 369 (788)
.+| |||++.+| +++.||+ ++|||+||++||++||+|||||||||++..+ .|.++++.+|++.+
T Consensus 525 ~~ynWGYdp~~yfape~~Ygtdp~dp~~ri~EfK~LV~alH~~GI~VILDVVyNHt~~~~------~f~~~~p~Yy~~~~ 598 (1111)
T TIGR02102 525 TNYNWGYDPQNYFALSGMYSEDPKDPELRIAEFKNLINEIHKRGMGVILDVVYNHTAKVY------IFEDLEPNYYHFMD 598 (1111)
T ss_pred cccccCCCcCcCcccccccccCCcCccccHHHHHHHHHHHHHCCCEEEEecccccccccc------cccccCCCceEeeC
Confidence 234 99999988 6667776 6999999999999999999999999998754 35666776666666
Q ss_pred CCCCcccCCCCccccCCCCHHHHHHHHHHHHHHHHhcCccEEEEecccccccCCCccccccccCccccCCccccCCCCCC
Q 003901 370 PKGEFYNYSGCGNTFNCNHPVVRQFIVDCLRYWVTEMHVDGFRFDLASIMTRGSSLWDSVNVYGIPIEGDLLTTGTPLRS 449 (788)
Q Consensus 370 ~~g~~~~~~g~~~dln~~~p~vr~~i~d~l~~W~~e~gVDGFR~D~a~~l~~~~~~w~~~~~~g~~~~~~~~~~g~~~~~ 449 (788)
.+|...+. .|++++++++++||++|+++++||+++|||||||||+|++++. .+|..
T Consensus 599 ~~G~~~~~-~~g~~l~~e~~~vrk~iiDsl~yWv~ey~VDGFRfDl~g~~d~--~~~~~--------------------- 654 (1111)
T TIGR02102 599 ADGTPRTS-FGGGRLGTTHEMSRRILVDSIKYLVDEFKVDGFRFDMMGDHDA--ASIEI--------------------- 654 (1111)
T ss_pred CCCCcccc-cCCCCCCcCCHHHHHHHHHHHHHHHHhcCCcEEEEeccccCCH--HHHHH---------------------
Confidence 77776553 3578999999999999999999999999999999999987753 22222
Q ss_pred hHHHHHHHcCCccccceeeeeeccCC---CcccccccCCCCcccccc---hhHHHHHHHHHhCC-------------CCc
Q 003901 450 PPLIDLISNDPILRGVKLIAEAWDTG---GLYQVGIFPHWGIWSEWN---GKYRDIVRQFIKGT-------------DGF 510 (788)
Q Consensus 450 ~~~~~~i~~~~~~~~~~ligE~w~~~---~~~~~~~~~~~~~~~~~n---~~f~~~lr~~~~g~-------------~~~ 510 (788)
+..++.. ..|+++|+||.|+.. .......++. .+..|+ ..|++.+|++++|. .+.
T Consensus 655 --~~~~l~~--~dP~~~liGE~W~~~~g~~~~~~~~~~~--~~~~~~~~ig~FnD~~Rd~irg~~~~~~~~gfi~G~~~~ 728 (1111)
T TIGR02102 655 --AYKEAKA--INPNIIMIGEGWRTYAGDEGDPVQAADQ--DWMKYTETVGVFSDDIRNELKSGFPNEGQPAFITGGARN 728 (1111)
T ss_pred --HHHHHHH--hCcCEEEEEecccccCCCCcccccccch--hhHhcCCcccEecHHHHHHHhcccccccccccccCCccc
Confidence 2222221 235899999999862 1122221111 122222 45666666666653 233
Q ss_pred HHHHHHHHhCCCCccCCCCCCCCcceeecccCCCcchhhhhhhcccccccCCCCCCCCCCCCCCCCcCCCCcchhHHHHH
Q 003901 511 AGAFAECLCGSPNLYQGGGRKPWNSINFVCAHDGFSLADLVSYNQKHNLANGEDNNDGETHNNSWNCGQEGEFANILVKK 590 (788)
Q Consensus 511 ~~~~~~~l~~~~~~~~~~~~~p~~~vnfv~nHD~~rl~d~~~~~~~~n~~~g~~~~dg~~~~~sw~~g~~~~~~~~~~~~ 590 (788)
...+...+.+++..|. ...|.++||||+|||++||+|+++++.+++.++++++ +
T Consensus 729 ~~~l~~~i~g~~~~~~--~~~P~~~VnYV~aHDn~TL~D~l~~~~~~~~~~~e~~------------------------~ 782 (1111)
T TIGR02102 729 VQGIFKNIKAQPHNFE--ADSPGDVVQYIAAHDNLTLHDVIAQSIKKDPKVAENQ------------------------E 782 (1111)
T ss_pred HHHHHHhhcCCccccc--cCCcccEEEEEecCCCCchHhhhhhccccCcccccch------------------------H
Confidence 4567777888776552 3589999999999999999999999888877665421 1
Q ss_pred HHHHHHHHHHHHHHhcCCceEEecccccccCCCCCC----------------------------------CCcCCCCCcc
Q 003901 591 LRRRQMRNFFLCLMVSQGVPMISMGDEYGHTKGGNN----------------------------------NTYCHDNDIN 636 (788)
Q Consensus 591 ~~~~~~r~a~alllt~pGiP~Iy~GdE~G~~~~g~~----------------------------------n~y~~~~~~~ 636 (788)
...++.|++++++||+|||||||+||||+++|.|++ |+|++++++|
T Consensus 783 ~~~~r~rla~~llllSQGiPfi~aGqEf~RTK~gnnn~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nSY~s~d~iN 862 (1111)
T TIGR02102 783 EIHRRIRLGNLMVLTSQGTAFIHSGQEYGRTKQFRNPDYRTPVSEDKVPNKSTLMTDVDGNPFRYPYFIHDSYDSSDAIN 862 (1111)
T ss_pred HHHHHHHHHHHHHHHhCcHhhhhcchhhhcccCCCcccccccccccccccccccccccccccccccccccccccCCCccc
Confidence 124667788899999999999999999999999984 4555588999
Q ss_pred ccccCcccCcc-----hHHHHHHHHHHHHHhhCccCCCCCCCCc-cceeeccCCCCCCCCCCCCcEEEEEEEcCCCCEEE
Q 003901 637 YFRWDKKEESK-----SDFFRFCCLLTKFRHECESLGLSDFPTA-DRLQWHGHAPGLPDWSDKSRFVAFTLIDSVKGEIY 710 (788)
Q Consensus 637 ~~~W~~~~~~~-----~~l~~~~r~Li~lRk~~~aL~~g~~~~~-~~~~~~~~~~~~~~~~~~~~vlaf~r~~~~~~~i~ 710 (788)
+++|++..... .++++|+|.||+|||++|+|+.+++..+ ..+.|+... ..+.|.....+++|......++.++
T Consensus 863 ~lDW~~~~~~~~~~~~~~~~~y~~~LI~lRk~~~~fr~~~~~~i~~~v~~~~~~-g~~~~~~~~~~ia~~~~~~~~~~~~ 941 (1111)
T TIGR02102 863 RFDWEKATDADAYPINNKTRDYTAGLIELRRSTDAFRLGSKALVDRKVTLITIP-GQNEIEEEDLVVAYQIVATNGDIYA 941 (1111)
T ss_pred eecccccccccccchhHHHHHHHHHHHHHHhcCccccccchhhhcCcEEEECCC-CCcccccCCcEEEEEEecCCCCeEE
Confidence 99999886531 4899999999999999999999987654 457775432 2234556689999998766556899
Q ss_pred EEEeCCCCcEEEECCCC-C-CCCeEEEecCCCCCCCCccCCCCchhhhhhhhcCCCCCCeeEEeeCCeEEEEEecC
Q 003901 711 VAFNASHLPVIISLPKR-P-GYRWEPLVDTSKPEPFDFLSSDLPAKEIAIKQYAPFLDANLYPMLSYSSIILLLSP 784 (788)
Q Consensus 711 Vv~N~~~~~~~v~Lp~~-~-g~~w~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~~vl~~~~ 784 (788)
|++|.+.+++++.||.. + ...|..+++........+.... +.. ...+.++|+|+|++||....
T Consensus 942 V~~Na~~~~~~~~lp~~~~~~~~~~v~~~~~~~g~~~~~~~~--~~~---------~~~~~~~v~~~s~~V~~~~~ 1006 (1111)
T TIGR02102 942 VFVNADDKARTLTLGEDYAHLTVGEVVVDAEQAGVTGIAEPK--GVE---------LTAEGLKLDPLTAAVVRVGG 1006 (1111)
T ss_pred EEECCCCCCEEEECCCCcccccceEEEEcccccCcccccccc--ccc---------ccCCeEEEcCcEEEEEEecc
Confidence 99999999999999973 1 3479999986443211111100 000 22468999999999999875
No 7
>PLN02877 alpha-amylase/limit dextrinase
Probab=100.00 E-value=2.4e-86 Score=774.92 Aligned_cols=621 Identities=21% Similarity=0.323 Sum_probs=444.5
Q ss_pred ccCc-ccceeeecccccccceecCCCCCCCCcEEeCCcEEEEEEcCCCCEEEEEEEeCCCccCCceeeEEecccccCCCC
Q 003901 70 SKSA-ELETAVIKKPQSQRFQVSKGYPTPFGATLRDGGVNFSIFSSNAVSATLCLITLSDLQENKVTEEIALDSFANKTG 148 (788)
Q Consensus 70 ~~~~-~~~~~~~~~~~~~~~~~~~g~~~~lGa~~~~~~~~F~vwap~A~~V~L~l~~~~d~~~~~~~~~~~l~~~~~~~~ 148 (788)
..|. .+.|.||...+|+..+.+.| +|||++.+++|+|+||||+|++|+|+||+..+ .......++|. ..+
T Consensus 189 ~~g~~~~at~vq~~~~lD~~y~y~~---~LGA~~~~~g~~F~VWAPtA~~V~L~lyd~~~--~~~~~~~~~m~----~~~ 259 (970)
T PLN02877 189 ADGKCTDATGLQLPGVLDDLFAYDG---PLGAHFSKDAVSLYLWAPTAQAVSLCLYDDPR--GKEPLEIVQLK----ESN 259 (970)
T ss_pred CCCCEEccccccchhhhhhhccCCC---CCcceEecCCEEEEEECCCCCEEEEEEecCCC--CccceEEeccc----CCC
Confidence 3444 45566999999999877765 79999999999999999999999999997532 12233456663 468
Q ss_pred CEEEEEEcCCCCCceeeEEEcCCcCCCCCcccCCcccccCcccceeeecccccCCCCCCCCCCcceecccCCCCCCCCCC
Q 003901 149 DVWHVFLKGDFKDMLYGYKFDGKFSPQEGHYFDPTKIVLDPYAKAVISRAQFGVLGPDENCWPQMACLVPTPEDEFDWEG 228 (788)
Q Consensus 149 gvW~~~i~~~~~~~~Y~y~~~g~~~~~~g~~~~~~~~~~DPya~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~ 228 (788)
|||+++++++++|.+|+|+|+ .+.|..|.. ....++||||+++..++.++.+.+.++. ...+.+|+.
T Consensus 260 GVWsv~v~~~~~G~~Y~Y~V~-v~~p~~g~~--~~~~v~DPYA~als~ng~~S~vvDl~~~----------~~~p~gW~~ 326 (970)
T PLN02877 260 GVWSVEGPKSWEGCYYVYEVS-VYHPSTGKV--ETCYANDPYARGLSADGRRTLLVDLDSD----------DLKPEGWDN 326 (970)
T ss_pred CEEEEEeccCCCCCeeEEEEe-ecccCCCcc--cccccCCccceEEecCCCceEEECCccc----------cCCChhhhh
Confidence 999999999999999999997 344555543 2456899999999877655544322100 012457875
Q ss_pred ---CCCCCCCCCCeEEEEEeccCcccCCCC-CCCCCcCHHHHHhh-------hHHHHHcCCCeEEECcccccCccCcccC
Q 003901 229 ---DLPLKYPQRDLIIYEVHVRGFTRHESS-KTEHPGTYLGVVEK-------LDHLKDLGINCLELMPCHEFNELEYFSY 297 (788)
Q Consensus 229 ---~~~~~~~~~~~viYei~v~~Ft~~~~s-~~~~~G~~~gl~~~-------L~yLk~LGvt~I~L~Pi~~~~~~~~~~~ 297 (788)
+.|+..+++++||||+|||+|+.++++ ...++|+|.|++++ |+|||+||||||+|||+|++.+.+....
T Consensus 327 ~~~~~p~~~~~~D~VIYElHVRDFS~~d~sv~~~~RGtylgftE~~s~gi~hLk~LkelGVThVeLLPvfDf~tvdE~~~ 406 (970)
T PLN02877 327 LAKEKPCLLSFSDISIYELHVRDFSANDETVHPDFRGGYLAFTSQDSAGVLHLKKLADAGLTHVHLLPTFQFGSVDDEKE 406 (970)
T ss_pred cccccCccCCCcccEEEEEeccccccCCCCCCcCCCCcchhhhhhhhhHHHHHHHHHHcCCCEEEeCCccccCCcccccc
Confidence 234455789999999999999986654 45689999999987 5666667999999999999976432110
Q ss_pred ----------------------------CCCCCCcccCCCCC--CCCCCCc-------HHHHHHHHHHHHHcCCEEEEEe
Q 003901 298 ----------------------------NSVLGDYNYSSAGI--RNCGHDA-------INEFKLLVREAHKRGIEVVMDV 340 (788)
Q Consensus 298 ----------------------------~~~~~~wgY~~~~~--~~~~~G~-------~~elk~lV~~aH~~Gi~VilDv 340 (788)
....++|||++..| +...|++ +.|||+||++||++||+|||||
T Consensus 407 ~~~~~~~~~l~~~~~~s~~~q~~v~~~~~~d~yNWGYDP~~YfaPEgSYatdP~g~~RI~efk~mV~~lH~~GI~VImDV 486 (970)
T PLN02877 407 NWKCVDPKELEKLPPDSEEQQAAITAIQDDDGYNWGYNPVLWGVPKGSYASNPDGPCRIIEFRKMVQALNRIGLRVVLDV 486 (970)
T ss_pred cccccccchhccccccchhhhhcccccccCCCCCCCCCccccCCCCcccccCCCCcchHHHHHHHHHHHHHCCCEEEEEE
Confidence 01225699999987 4555654 6799999999999999999999
Q ss_pred eeccccCCCCCCCccccCCCCCccceeeCCCCCcccCCCCccccCCCCHHHHHHHHHHHHHHHHhcCccEEEEecccccc
Q 003901 341 VFNHTVEGNDKGPILSFRGVDNSVYYMLAPKGEFYNYSGCGNTFNCNHPVVRQFIVDCLRYWVTEMHVDGFRFDLASIMT 420 (788)
Q Consensus 341 V~NH~~~~~~~~~~~~~~~~~~~~yy~~~~~g~~~~~~g~~~dln~~~p~vr~~i~d~l~~W~~e~gVDGFR~D~a~~l~ 420 (788)
||||+++.+++.+...++.+.+.+||+.+++|.+.+ ++|+++.+.+++|||++|+|+++||++||||||||||+|+++.
T Consensus 487 VyNHt~~~g~~~~~s~ld~~vP~YY~r~~~~G~~~n-s~c~n~~Ase~~mvrklIlDsl~yW~~ey~VDGFRFDlmg~i~ 565 (970)
T PLN02877 487 VYNHLHSSGPFDENSVLDKIVPGYYLRRNSDGFIEN-STCVNNTASEHYMVDRLIVDDLLNWAVNYKVDGFRFDLMGHLM 565 (970)
T ss_pred CCccccCCCCcchhhcccCCCCCceEEECCCCCccc-CCccCCCccCCHHHHHHHHHHHHHHHHHhCCCEEEEEcccccc
Confidence 999999877766556677788888888888898888 5677888999999999999999999999999999999999997
Q ss_pred cCCCccccccccCccccCCccccCCCCCChHHHHHHHcC--Cc-cccceeeeeeccCCCcccc--------cccCCCCcc
Q 003901 421 RGSSLWDSVNVYGIPIEGDLLTTGTPLRSPPLIDLISND--PI-LRGVKLIAEAWDTGGLYQV--------GIFPHWGIW 489 (788)
Q Consensus 421 ~~~~~w~~~~~~g~~~~~~~~~~g~~~~~~~~~~~i~~~--~~-~~~~~ligE~w~~~~~~~~--------~~~~~~~~~ 489 (788)
.+ .|..+ ...++.|..+ .+ .++++|+||.|+.+..... .+.... .+
T Consensus 566 ~~--tm~~~--------------------~~~L~~i~~~~~~~dg~~i~lyGEgW~~g~~~~~~~~~~A~q~n~~g~-gI 622 (970)
T PLN02877 566 KR--TMVRA--------------------KDALQSLTLERDGVDGSSIYLYGEGWDFGEVAKNGRGVNASQFNLAGT-GI 622 (970)
T ss_pred HH--HHHHH--------------------HHHHHHHhhhhcccCCCceEEEEeCCCCCCcccccccccccccccCCC-ce
Confidence 53 22221 1133344321 11 3579999999987642111 111111 35
Q ss_pred cccchhHHHHHHH---HH-hCCCCcH--------------------------HHHHHHHhCCCCc---------------
Q 003901 490 SEWNGKYRDIVRQ---FI-KGTDGFA--------------------------GAFAECLCGSPNL--------------- 524 (788)
Q Consensus 490 ~~~n~~f~~~lr~---~~-~g~~~~~--------------------------~~~~~~l~~~~~~--------------- 524 (788)
+.||+.+||.++. |- ....|+. ..+...|.|+..-
T Consensus 623 g~FnD~~RDavkGg~~F~~~~~qGf~~G~~~~pn~~~~~~~~~~~~~~~~~~d~i~~glaGnl~~~~~~~~~g~~~~g~~ 702 (970)
T PLN02877 623 GSFNDRIRDAMLGGSPFGHPLQQGFVTGLFLQPNGHDQGGEDVQELMLATAKDHIQVGMAGNLKDYVLTNREGKEVKGSE 702 (970)
T ss_pred EEecchhHHHHcCCCCCCCcCCCceecccccCCcccccccchhhhhhhhhhHHHHHHHhccchhcccccccccccccccc
Confidence 6677777777662 20 0001111 1222334444321
Q ss_pred ---cCC----CCCCCCcceeecccCCCcchhhhhhhcccccccCCCCCCCCCCCCCCCCcCCCCcchhHHHHHHHHHHHH
Q 003901 525 ---YQG----GGRKPWNSINFVCAHDGFSLADLVSYNQKHNLANGEDNNDGETHNNSWNCGQEGEFANILVKKLRRRQMR 597 (788)
Q Consensus 525 ---~~~----~~~~p~~~vnfv~nHD~~rl~d~~~~~~~~n~~~g~~~~dg~~~~~sw~~g~~~~~~~~~~~~~~~~~~r 597 (788)
|.. ....|.++|||+++||+.||+|++.+...... ..+.+.++.+
T Consensus 703 ~~~y~~~~~~ya~~P~q~InYvs~HDN~TL~D~l~~~~~~~~----------------------------s~~~r~r~~~ 754 (970)
T PLN02877 703 VLTHDGKPVAYASSPTETINYVSAHDNETLFDIISLKTPMEI----------------------------SVDERCRINH 754 (970)
T ss_pred ccccCCcccccccCHHHheeeeeccCCchHHHHHHhhcCCCC----------------------------CHHHHHHHHH
Confidence 221 22578999999999999999999875421000 0134567788
Q ss_pred HHHHHHHhcCCceEEecccccccCCCCCCCCcCCCCCccccccCccc-----------Cc--------------------
Q 003901 598 NFFLCLMVSQGVPMISMGDEYGHTKGGNNNTYCHDNDINYFRWDKKE-----------ES-------------------- 646 (788)
Q Consensus 598 ~a~alllt~pGiP~Iy~GdE~G~~~~g~~n~y~~~~~~~~~~W~~~~-----------~~-------------------- 646 (788)
++++++|++||||||++|+||+|+|.++.|+|++++++|.+||+.+. ++
T Consensus 755 la~aiv~lsQGipF~haG~E~lRSK~~d~nSYnSgD~~N~lDw~~~~nn~~~GlP~~~~~~~~w~~~~~~l~~~~~~p~~ 834 (970)
T PLN02877 755 LATSIIALSQGIPFFHAGDEILRSKSLDRDSYNSGDWFNRLDFSYDSNNWGVGLPPKEKNEDNWPLIKPRLADPSFKPSK 834 (970)
T ss_pred HHHHHHHHhChhhHHhcchhhhcCCCCCCCCCcCchhhheeccccccCccccCCChhHhcchhhhhhhhhhcccccccch
Confidence 99999999999999999999999999999999999999999999832 21
Q ss_pred --chHHHHHHHHHHHHHhhCccCCCCCCCCc-cceeeccCCCCCCCCCCCCcEEEEEEEcCC------------CCEEEE
Q 003901 647 --KSDFFRFCCLLTKFRHECESLGLSDFPTA-DRLQWHGHAPGLPDWSDKSRFVAFTLIDSV------------KGEIYV 711 (788)
Q Consensus 647 --~~~l~~~~r~Li~lRk~~~aL~~g~~~~~-~~~~~~~~~~~~~~~~~~~~vlaf~r~~~~------------~~~i~V 711 (788)
-....+++|.||+|||++|+|+.++...+ +++.|+... .....+|++|...+.. .+.++|
T Consensus 835 ~~i~~~~~~~~~Li~lRks~plFrl~t~~~I~~~v~F~~~g-----~~~~~gvi~~~i~d~~~~~~~~~~~d~~~~~ivV 909 (970)
T PLN02877 835 EHILAALDNFLDLLRIRYSSPLFRLRTANAIQERVRFHNTG-----PSSIPGVIVMSIEDGHEGVPGLSQLDPIYSRIVV 909 (970)
T ss_pred hHHHHHHHHHHHHHHHHhcCcccCCCCHHHHHhhcEEeccC-----CCcCCCEEEEEEcCCCCccccccccccccCcEEE
Confidence 03458899999999999999999986654 346665431 1234699999987642 146999
Q ss_pred EEeCCCCcEEEECCCCCCCCe--EEEecCCCCCCCCccCCCCchhhhhhhhcCCCCCCeeEEeeCCeEEEEEec
Q 003901 712 AFNASHLPVIISLPKRPGYRW--EPLVDTSKPEPFDFLSSDLPAKEIAIKQYAPFLDANLYPMLSYSSIILLLS 783 (788)
Q Consensus 712 v~N~~~~~~~v~Lp~~~g~~w--~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~~vl~~~ 783 (788)
++|.+.+++++++|...+..+ ..|.-. ..+.. +.+..-....++++|||+|++|||..
T Consensus 910 v~Na~~~~~~~~~~~~~~~~~~l~~v~~~----~~d~~----------~~~~~~~~~~~~~tvp~~t~aVfv~~ 969 (970)
T PLN02877 910 IFNARPTEVSFESPALKGRTLELHPVQVM----SADEV----------VKKSVYEASSGVFTVPPRTTAVFVEH 969 (970)
T ss_pred EEcCCCccEEEecccccccceeecccccc----cccce----------eccceeeccCCeEEecCceEEEEEee
Confidence 999999999999998533222 112100 00000 00101113357999999999999974
No 8
>TIGR02103 pullul_strch alpha-1,6-glucosidases, pullulanase-type. Members of this protein family include secreted (or membrane-anchored) pullulanases of Gram-negative bacteria and pullulanase-type starch debranching enzymes of plants. Both enzymes hydrolyze alpha-1,6 glycosidic linkages. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family is closely homologous to, but architecturally different from, the Gram-positive pullulanases of Gram-positive bacteria (TIGR02102).
Probab=100.00 E-value=3.6e-85 Score=768.69 Aligned_cols=619 Identities=22% Similarity=0.352 Sum_probs=448.3
Q ss_pred ccCc-ccceeeecccccccceecCCCCCCCCcEEeCCcEEEEEEcCCCCEEEEEEEeCCCccCCceeeEEecccccCCCC
Q 003901 70 SKSA-ELETAVIKKPQSQRFQVSKGYPTPFGATLRDGGVNFSIFSSNAVSATLCLITLSDLQENKVTEEIALDSFANKTG 148 (788)
Q Consensus 70 ~~~~-~~~~~~~~~~~~~~~~~~~g~~~~lGa~~~~~~~~F~vwap~A~~V~L~l~~~~d~~~~~~~~~~~l~~~~~~~~ 148 (788)
..|. .+.|.||...+|+..+.+.|...+|||++.+++|+|+||||+|++|+|+||+.. ++ ....++|.+ +..+
T Consensus 99 ~~g~~~~at~vq~~~~lD~~y~y~~~~~~LGa~~~~~gv~FrVWAPtA~~V~L~Ly~~~-~~---~~~~~~M~~--~~~~ 172 (898)
T TIGR02103 99 ANGILISATGVQTAGVLDALYAYAGPALSLGATLTDSGVTFRLWAPTAQQVKLHIYSAS-KK---VETTLPMTR--DSTS 172 (898)
T ss_pred CCCCEeeecccccchhhhHHhhcCCCCCCCCcEEeCCcEEEEEECCCCCEEEEEEEcCC-CC---ccceEeCcc--CCCC
Confidence 4444 445669999999999999886677999999999999999999999999999743 22 234677753 2257
Q ss_pred CEEEEEEcCCCCCceeeEEEcCCcCCCCCcccCCcccccCcccceeeecccccCCCCCCCCCCcceecccCCCCCCCCCC
Q 003901 149 DVWHVFLKGDFKDMLYGYKFDGKFSPQEGHYFDPTKIVLDPYAKAVISRAQFGVLGPDENCWPQMACLVPTPEDEFDWEG 228 (788)
Q Consensus 149 gvW~~~i~~~~~~~~Y~y~~~g~~~~~~g~~~~~~~~~~DPya~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~ 228 (788)
|+|+++++++++|.+|+|+|+ .+.|..|.. ....++||||+++..++.++++...... ...+.+|..
T Consensus 173 GVWsv~v~g~~~G~~Y~Y~V~-v~~p~~G~v--~~~~v~DPYA~als~n~~~S~VvDl~~~----------~~~p~~W~~ 239 (898)
T TIGR02103 173 GVWSAEGGSSWKGAYYRYEVT-VYHPSTGKV--ETYLVTDPYSVSLSANSEYSQVVDLNDP----------ALKPEGWDA 239 (898)
T ss_pred CEEEEEECcCCCCCEeEEEEE-EecCCCCeE--CCeEEeCcCcceEcCCCCCeEEeCCccc----------cCCCcchhh
Confidence 999999999999999999998 344555543 2456899999999877766654432110 013457876
Q ss_pred CCCC---CCCCCCeEEEEEeccCcccCCCCCC-CCCcCHHHHHhh-------hHHHHHcCCCeEEECcccccCccCccc-
Q 003901 229 DLPL---KYPQRDLIIYEVHVRGFTRHESSKT-EHPGTYLGVVEK-------LDHLKDLGINCLELMPCHEFNELEYFS- 296 (788)
Q Consensus 229 ~~~~---~~~~~~~viYei~v~~Ft~~~~s~~-~~~G~~~gl~~~-------L~yLk~LGvt~I~L~Pi~~~~~~~~~~- 296 (788)
+..+ ..+++++||||+|||+|+.++++.. ..+|+|.+++++ |.|||+||||||+|||||++.+.+...
T Consensus 240 ~~~p~p~~~~~~d~iIYElHVRDFS~~d~s~~~~~rGtYla~tE~~t~gi~hLk~L~eLGVThVeLLPv~df~tvdE~~~ 319 (898)
T TIGR02103 240 LAMPKPQLASFADMVLYELHIRDFSANDESVPAELRGKYLAFTAADSAGVQHLKKLADAGVTHLHLLPTFDIATVNEEKE 319 (898)
T ss_pred cccccCCcCCCcccEEEEEeccccccCCCCCCcCcCceeeehhccchhhhHHHHHHHhCCCcEEEEcChhhcCccccccc
Confidence 5422 2368999999999999998776654 689999999986 666668899999999999997543211
Q ss_pred ----------------CCC-----------------------------------CC-CCcccCCCCC--CCCCCCc----
Q 003901 297 ----------------YNS-----------------------------------VL-GDYNYSSAGI--RNCGHDA---- 318 (788)
Q Consensus 297 ----------------~~~-----------------------------------~~-~~wgY~~~~~--~~~~~G~---- 318 (788)
+.. .. .+|||++..| +...|++
T Consensus 320 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~v~~~~~~d~yNWGYDP~~y~aPegSYatdp~g 399 (898)
T TIGR02103 320 KVADIQQPFSKLCELNPDSKSSEFAGYCDSGSQLKQNDSKDNPEVQALNTLVRNLDSYNWGYDPFHYTVPEGSYATDPEG 399 (898)
T ss_pred cccccccchhhhhccccccccccccccccccccccccccccchhhhhhhhhhccCCCCCCCCCCcccCCcChhhccCCCC
Confidence 000 11 2499999977 3333443
Q ss_pred ---HHHHHHHHHHHHHcCCEEEEEeeeccccCCCCCCCccccCCCCCccceeeCCCCCcccCCCCccccCCCCHHHHHHH
Q 003901 319 ---INEFKLLVREAHKRGIEVVMDVVFNHTVEGNDKGPILSFRGVDNSVYYMLAPKGEFYNYSGCGNTFNCNHPVVRQFI 395 (788)
Q Consensus 319 ---~~elk~lV~~aH~~Gi~VilDvV~NH~~~~~~~~~~~~~~~~~~~~yy~~~~~g~~~~~~g~~~dln~~~p~vr~~i 395 (788)
+.|||+||++||++||+||||||||||+.+++... ..+....+.+|++.+.+|.+.+.++| +++++++|+||++|
T Consensus 400 ~~Ri~Efk~mV~alH~~Gi~VIlDVVyNHt~~~g~~~~-s~ld~~~P~YY~r~~~~G~~~n~~~~-~d~a~e~~~Vrk~i 477 (898)
T TIGR02103 400 PARIKEFREMVQALNKTGLNVVMDVVYNHTNASGPNDR-SVLDKIVPGYYHRLNEDGGVENSTCC-SNTATEHRMMAKLI 477 (898)
T ss_pred chHHHHHHHHHHHHHHCCCEEEEEeecccccccCccCc-ccccccCcHhhEeeCCCCCeecCCCC-cCCCCCCHHHHHHH
Confidence 68999999999999999999999999998765432 23556666777777777888888877 57899999999999
Q ss_pred HHHHHHHHHhcCccEEEEecccccccCCCccccccccCccccCCccccCCCCCChHHHHHHHcCCccccceeeeeeccCC
Q 003901 396 VDCLRYWVTEMHVDGFRFDLASIMTRGSSLWDSVNVYGIPIEGDLLTTGTPLRSPPLIDLISNDPILRGVKLIAEAWDTG 475 (788)
Q Consensus 396 ~d~l~~W~~e~gVDGFR~D~a~~l~~~~~~w~~~~~~g~~~~~~~~~~g~~~~~~~~~~~i~~~~~~~~~~ligE~w~~~ 475 (788)
+|++++|+++|||||||||+|++++. +||.. +.+++.. +.|+++++||.|+.+
T Consensus 478 iDsl~~W~~ey~VDGFRfDlm~~~~~--~f~~~-----------------------~~~~l~~--i~pdi~l~GEgW~~~ 530 (898)
T TIGR02103 478 VDSLVVWAKDYKVDGFRFDLMGHHPK--AQMLA-----------------------AREAIKA--LTPEIYFYGEGWDFG 530 (898)
T ss_pred HHHHHHHHHHcCCCEEEEechhhCCH--HHHHH-----------------------HHHHHHH--hCCCEEEEecCCCcc
Confidence 99999999999999999999999976 45554 3333333 456999999999865
Q ss_pred Cccc------c--cccCCCCcccccchhHHHHHHH---HHh-----CCCCcH-------------------------HHH
Q 003901 476 GLYQ------V--GIFPHWGIWSEWNGKYRDIVRQ---FIK-----GTDGFA-------------------------GAF 514 (788)
Q Consensus 476 ~~~~------~--~~~~~~~~~~~~n~~f~~~lr~---~~~-----g~~~~~-------------------------~~~ 514 (788)
.... . .+.... ..+.||+.+|+.+|. |-. ...|+. ..+
T Consensus 531 ~~~~~~~~~~a~~~n~~~~-~ig~FnD~~RDavrGg~~f~~~~~~~~~~Gf~~G~~~~~~~~~~~~~~~~~~~~~~~d~i 609 (898)
T TIGR02103 531 EVANNRRFINATQLNLAGT-GIGTFSDRLRDAVRGGGPFDSGDALRQNQGFGSGLAVQPNAHHGLDAASKDGALHLADLT 609 (898)
T ss_pred cccchhhhhhhhccccCCC-CeEEeccchhhHhcCCCccccccccccCcceecCcccCCcccccccchhhhhhhhhHHHH
Confidence 3211 1 111111 346667777666653 111 001111 122
Q ss_pred HHHHhCCCC-----------------ccC----CCCCCCCcceeecccCCCcchhhhhhhcccccccCCCCCCCCCCCCC
Q 003901 515 AECLCGSPN-----------------LYQ----GGGRKPWNSINFVCAHDGFSLADLVSYNQKHNLANGEDNNDGETHNN 573 (788)
Q Consensus 515 ~~~l~~~~~-----------------~~~----~~~~~p~~~vnfv~nHD~~rl~d~~~~~~~~n~~~g~~~~dg~~~~~ 573 (788)
...|.|+.. .|. +....|.++|||+++||+.||+|.+.+....+.
T Consensus 610 ~~g~~Gnl~~~~~~~~~g~~~~g~~~~y~g~~~~ya~~P~e~inYvs~HDN~TL~D~l~~~~~~~~-------------- 675 (898)
T TIGR02103 610 RLGMAGNLKDFVLTDHEGKVVTGEELDYNGAPAGYAADPTETINYVSKHDNQTLWDAISYKAAAET-------------- 675 (898)
T ss_pred HHhhcCccccccccccccccccccccccCcCccccccCHHHheeeeeccCCccHHHHHHhhCCCCC--------------
Confidence 333444321 111 122578899999999999999999976421100
Q ss_pred CCCcCCCCcchhHHHHHHHHHHHHHHHHHHHhcCCceEEecccccccCCCCCCCCcCCCCCccccccCcccCc-------
Q 003901 574 SWNCGQEGEFANILVKKLRRRQMRNFFLCLMVSQGVPMISMGDEYGHTKGGNNNTYCHDNDINYFRWDKKEES------- 646 (788)
Q Consensus 574 sw~~g~~~~~~~~~~~~~~~~~~r~a~alllt~pGiP~Iy~GdE~G~~~~g~~n~y~~~~~~~~~~W~~~~~~------- 646 (788)
..+.|.++.+++++++|++||||||++|+||+|+|.++.|+|++++++|.++|+....+
T Consensus 676 --------------~~~~r~r~~~la~a~~~lsQGipF~haG~E~lRSK~~~~nSY~sgD~~N~vdw~~~~~~~~~glp~ 741 (898)
T TIGR02103 676 --------------PSAERVRMQAVSLSTVMLGQGIPFFHAGSELLRSKSFDRDSYDSGDWFNRVDFSGQDNNWNVGLPR 741 (898)
T ss_pred --------------CHHHHHHHHHHHHHHHHHhChhhHHhcchHhhcCCCCCCCCCcCchhhheecccccccccccCCCc
Confidence 01335677889999999999999999999999999999999999999999999976431
Q ss_pred --------------------------chHHHHHHHHHHHHHhhCccCCCCCCCCc-cceeeccCCCCCCCCCCCCcEEEE
Q 003901 647 --------------------------KSDFFRFCCLLTKFRHECESLGLSDFPTA-DRLQWHGHAPGLPDWSDKSRFVAF 699 (788)
Q Consensus 647 --------------------------~~~l~~~~r~Li~lRk~~~aL~~g~~~~~-~~~~~~~~~~~~~~~~~~~~vlaf 699 (788)
-..+.+|+|.||+|||++|+|+.++...+ +++.|+... .....++++|
T Consensus 742 ~~~n~~~w~~~~~~~~~~~~~p~~~~~~~~~~~~~~Li~lRks~p~Frl~t~~~I~~~v~F~~~g-----~~~~~g~i~~ 816 (898)
T TIGR02103 742 ADKDGSNWPIIAPVLQDAAAKPDATDIKATTAFFLELLRIRSSSPLFRLDTAAEVMKRVDFRNTG-----PDQIPGLIVM 816 (898)
T ss_pred ccccccchhhhcccccccccccchhhHHHHHHHHHHHHHHHhCCcccCCCCHHHHHhheEEeccC-----CcCCCCEEEE
Confidence 15689999999999999999999986653 446665321 1234699999
Q ss_pred EEEcCC----------CCEEEEEEeCCCCcEEEECCCCCCCCeEEEecCCCCCCCCccCCCCchhhhhhhhcCCCCCCee
Q 003901 700 TLIDSV----------KGEIYVAFNASHLPVIISLPKRPGYRWEPLVDTSKPEPFDFLSSDLPAKEIAIKQYAPFLDANL 769 (788)
Q Consensus 700 ~r~~~~----------~~~i~Vv~N~~~~~~~v~Lp~~~g~~w~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 769 (788)
...+.. .+.++||+|.+.+.+++ +|...+..|.++....... ...+... . + ....++
T Consensus 817 ~i~d~~~~~~~~~d~~~~~ivVv~Na~~~~~~~-~~~~~~~~~~l~~~~~~~~-d~~v~~~--~-------~--~~~~~~ 883 (898)
T TIGR02103 817 SIDDGGIQAGASLDPRYDGIVVIFNARPEEVTL-SPDFAGTGLELHAVQQASG-DESVAKS--V-------Y--SAANGT 883 (898)
T ss_pred EEcCCccccccccccccCeEEEEEcCCCccEEE-ecccCCCcEEEEecccccC-ccccccc--e-------e--eccCCE
Confidence 987641 25699999999999998 8876566788765432211 0001000 0 0 022578
Q ss_pred EEeeCCeEEEEEec
Q 003901 770 YPMLSYSSIILLLS 783 (788)
Q Consensus 770 ~~v~~~s~~vl~~~ 783 (788)
++|||+|++||+..
T Consensus 884 ~~vp~~s~~V~~~~ 897 (898)
T TIGR02103 884 FTVPAWTTAVFVLP 897 (898)
T ss_pred EEEcCcEEEEEEec
Confidence 99999999999974
No 9
>KOG0470 consensus 1,4-alpha-glucan branching enzyme/starch branching enzyme II [Carbohydrate transport and metabolism]
Probab=100.00 E-value=4.4e-77 Score=660.52 Aligned_cols=613 Identities=32% Similarity=0.475 Sum_probs=510.1
Q ss_pred CCCCcEEeCCc-EEEEEEcCCCCEEEEEEEeCCCccCCceeeEEecccccCCCCCEEEEEEcCC--CCCceeeEEEcCCc
Q 003901 96 TPFGATLRDGG-VNFSIFSSNAVSATLCLITLSDLQENKVTEEIALDSFANKTGDVWHVFLKGD--FKDMLYGYKFDGKF 172 (788)
Q Consensus 96 ~~lGa~~~~~~-~~F~vwap~A~~V~L~l~~~~d~~~~~~~~~~~l~~~~~~~~gvW~~~i~~~--~~~~~Y~y~~~g~~ 172 (788)
.+||+|..+++ +.|..|||.|+.|.|+ +|+|+|... ...+.+ +..-|+|++++|.. ..+..+.+.+.
T Consensus 103 ~~~g~h~~~d~~v~~~ewaP~a~~~s~~----gd~n~W~~~-~~~~~~--k~~~g~w~i~l~~~~~~s~~v~H~s~~--- 172 (757)
T KOG0470|consen 103 EPLGTHRTPDGRVDFTEWAPLAEAVSLI----GDFNNWNPS-SNELKP--KDDLGVWEIDLPPKVNGSGAVPHGSVS--- 172 (757)
T ss_pred cccceeccCCCceeeeeecccccccccc----cccCCCCCc-ccccCc--ccccceeEEecCcccCCCcccccccee---
Confidence 48999998887 9999999999999999 899998764 223332 34569999999844 45555544432
Q ss_pred CCCCCcccCCcccccCcccceeeecccccCCCCCCCCCCcceecccCCCCCCCCCCCCCCC-CCCCCeEEEEEeccCccc
Q 003901 173 SPQEGHYFDPTKIVLDPYAKAVISRAQFGVLGPDENCWPQMACLVPTPEDEFDWEGDLPLK-YPQRDLIIYEVHVRGFTR 251 (788)
Q Consensus 173 ~~~~g~~~~~~~~~~DPya~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~-~~~~~~viYei~v~~Ft~ 251 (788)
.....+||+..+.....|...++...+++++.++.+++..+++|..+.+.+ .|.++++|||+|||+|+.
T Consensus 173 ----------~~~~~~p~g~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~e~~w~~~~~~p~~P~~sL~IYE~HVrgfS~ 242 (757)
T KOG0470|consen 173 ----------KIHLSTPYGETCKRIPAWATYVDQEGEGPQYYGIYWDPSPEFDWGFKHSRPKIPESSLRIYELHVRGFSS 242 (757)
T ss_pred ----------EEEeecCCcceeeccChHhhcccCCCcccceeeccCCCCCcccccccCCCCCCChhheEEEEEeeccccC
Confidence 123568888888887777766666677788888888877789999876554 566699999999999999
Q ss_pred CCCCCCCCCcCHHHHHhh-hHHHHHcCCCeEEECcccccCccCcccCCCCCCCcccCCCCC--CCCCCCcHH------HH
Q 003901 252 HESSKTEHPGTYLGVVEK-LDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYNYSSAGI--RNCGHDAIN------EF 322 (788)
Q Consensus 252 ~~~s~~~~~G~~~gl~~~-L~yLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~wgY~~~~~--~~~~~G~~~------el 322 (788)
++++....+| |+++++| |++||+||+|||+||||+++. ..++.|||.+..+ +-.+||+.+ ||
T Consensus 243 ~E~~v~~~~g-Y~~FteKvlphlK~LG~NaiqLmpi~Ef~--------~~~~s~GY~~~nFFapssrYgt~~s~~ri~ef 313 (757)
T KOG0470|consen 243 HESKVNTRGG-YLGFTEKVLPHLKKLGYNAIQLMPIFEFG--------HYYASWGYQVTNFFAPSSRYGTPESPCRINEF 313 (757)
T ss_pred CCCccccccc-hhhhhhhhhhHHHHhCccceEEeehhhhh--------hhhhccCcceeEeecccccccCCCcccchHHH
Confidence 9988877677 9999999 999999999999999999984 1455689999877 556899988 99
Q ss_pred HHHHHHHHHcCCEEEEEeeeccccCCCCCCCccccCCCCCccceeeCCCCCcccCCCCccccCCCCHHHHHHHHHHHHHH
Q 003901 323 KLLVREAHKRGIEVVMDVVFNHTVEGNDKGPILSFRGVDNSVYYMLAPKGEFYNYSGCGNTFNCNHPVVRQFIVDCLRYW 402 (788)
Q Consensus 323 k~lV~~aH~~Gi~VilDvV~NH~~~~~~~~~~~~~~~~~~~~yy~~~~~g~~~~~~g~~~dln~~~p~vr~~i~d~l~~W 402 (788)
|.||++||..||.||||||+||+++ ++..+...|+|+++..||+.++ .++++++|++.+|+++++|+++|+++++||
T Consensus 314 K~lVd~aHs~GI~VlLDVV~sHaa~-n~~d~l~~fdGid~~~Yf~~~~--r~~h~~~~~r~fn~~~~~V~rflL~nLr~W 390 (757)
T KOG0470|consen 314 KELVDKAHSLGIEVLLDVVHSHAAK-NSKDGLNMFDGIDNSVYFHSGP--RGYHNSWCSRLFNYNHPVVLRFLLSNLRWW 390 (757)
T ss_pred HHHHHHHhhCCcEEehhhhhhhccc-CcCCcchhccCcCCceEEEeCC--cccccccccccccCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999 4555677899999999999988 677889999999999999999999999999
Q ss_pred HHhcCccEEEEecccccccCCCccccccccCccccCCccccCCCCCChHHHH-HHHcCCccccce-eeeeeccCCCcccc
Q 003901 403 VTEMHVDGFRFDLASIMTRGSSLWDSVNVYGIPIEGDLLTTGTPLRSPPLID-LISNDPILRGVK-LIAEAWDTGGLYQV 480 (788)
Q Consensus 403 ~~e~gVDGFR~D~a~~l~~~~~~w~~~~~~g~~~~~~~~~~g~~~~~~~~~~-~i~~~~~~~~~~-ligE~w~~~~~~~~ 480 (788)
++||+|||||||.+..|-+.+..|..- |++......-+.|++...++++. ++++++++.... +|+++|+.++++..
T Consensus 391 VtEY~vDGFRFD~~ssm~~~~~g~~~~--f~gd~~~y~g~~g~~~d~~~l~~lmlAnd~~l~~~~~~It~~~D~~gm~~~ 468 (757)
T KOG0470|consen 391 VTEYHVDGFRFDLVSSMLYTHHGNAAG--FDGDYIEYFGTDGSFVDVDALVYLMLANDPLLGGTPGLITDAEDVSGMPGL 468 (757)
T ss_pred HHheeccceEEcchhhhhhhccccccc--cCCcchhhhccCCCcccccHHHHHHhhcchhhhcCCcceEeeeccccCCCc
Confidence 999999999999999987766666542 44443333344677788888998 889999888888 99999999999999
Q ss_pred cccCCCCcccccchhHHHHHHHHHhCCCCcHH-HHHHHHhCCCCccCCCCCCCCcceeecccCCCcchhhhhhhcccccc
Q 003901 481 GIFPHWGIWSEWNGKYRDIVRQFIKGTDGFAG-AFAECLCGSPNLYQGGGRKPWNSINFVCAHDGFSLADLVSYNQKHNL 559 (788)
Q Consensus 481 ~~~~~~~~~~~~n~~f~~~lr~~~~g~~~~~~-~~~~~l~~~~~~~~~~~~~p~~~vnfv~nHD~~rl~d~~~~~~~~n~ 559 (788)
+.+|.++.+++||..|+..++.+.++...... .++++++++...+..+.+.|+.+|||+++||+.++.|+++++.+
T Consensus 469 ~~~P~~~g~~~~d~~yr~~~~~~~k~~~~Lk~~~~~~~~~gs~~~~ltN~R~~e~~v~y~~~HDq~~v~d~~T~af~--- 545 (757)
T KOG0470|consen 469 GCFPVWQGGAGFDGLYRLAVRLFDKWIQLLKGSSDAEWIMGSIDYTLTNRRYPEKSVNYAESHDQALVGDLVTIAFK--- 545 (757)
T ss_pred CCccccccccccchhhhHHhhhHHHHHHHhccCchhheeccCcceeeeccccccceeeeeeccCCccccceeeecch---
Confidence 99999999999999999999999998766555 68889999988888888899999999999999999998887654
Q ss_pred cCCCCCCCCCCCCCCCCcCCCCcchhHHHHHHHHHHHHHHHHHHHhcCCceEEecccccccCCCCCCCCcCCCCCccccc
Q 003901 560 ANGEDNNDGETHNNSWNCGQEGEFANILVKKLRRRQMRNFFLCLMVSQGVPMISMGDEYGHTKGGNNNTYCHDNDINYFR 639 (788)
Q Consensus 560 ~~g~~~~dg~~~~~sw~~g~~~~~~~~~~~~~~~~~~r~a~alllt~pGiP~Iy~GdE~G~~~~g~~n~y~~~~~~~~~~ 639 (788)
+..++.+|+|+.++...++.+++.+..++++.+..+++++|+||+|||+|||+++.++.++|+.++..+..+
T Consensus 546 --------~l~d~~~~~~~~~g~p~~~~idR~r~~h~~~~lit~~lg~g~pl~fmGdEfGh~e~~d~~~~~nn~s~~~~r 617 (757)
T KOG0470|consen 546 --------WLMDETSWNCGSEGTPGTSVIDRGRALHKMIRLITLGLGGGAPLNFMGDEFGHPEWLDFPRYGNNFSYNYAR 617 (757)
T ss_pred --------hhcchhhhcccccCCCcchHHHHHHHHHHHHHHHHHhccCccceeccccccCCccccCCCcccCCccccccC
Confidence 234567999999999999999999999998888889999999999999999999999999999999999899
Q ss_pred cCcccCcchHHHHHHHHHHHHHhhCccCCCCCCCCccceeeccCCCCCCCC---CCCCcEEEEEEEcCC-CCEEEEEEeC
Q 003901 640 WDKKEESKSDFFRFCCLLTKFRHECESLGLSDFPTADRLQWHGHAPGLPDW---SDKSRFVAFTLIDSV-KGEIYVAFNA 715 (788)
Q Consensus 640 W~~~~~~~~~l~~~~r~Li~lRk~~~aL~~g~~~~~~~~~~~~~~~~~~~~---~~~~~vlaf~r~~~~-~~~i~Vv~N~ 715 (788)
|.+.+....+++++.+.|+.+|+++-.|-.........++|+........+ ...+.+++|...+.. ...+.|.+|.
T Consensus 618 ~~~f~~~~~~~~r~~~~l~~F~~~~~~L~~~~~~~~~~~~~~~~k~e~~~~i~fer~~~~~vfn~h~~~s~~d~~vg~n~ 697 (757)
T KOG0470|consen 618 RKRFDLADSDLLRYRRQLNSFDREMNLLEERNGFTTSELQYISLKHEADEVIVFERGPLLFVFNFHDSNSYIDYRVGFNA 697 (757)
T ss_pred ccccccccchhhhhhhhhhhhhhHHHHHHHhccccccccccccccchhhheeeeccCCeEEEEEecCCCCCceeEEEecC
Confidence 955544448899999999999999988877766666677776543222222 223667777776654 3689999999
Q ss_pred CCCcEEEECCCCC-CCCeEEEecCCCCCCCCccCCCCch
Q 003901 716 SHLPVIISLPKRP-GYRWEPLVDTSKPEPFDFLSSDLPA 753 (788)
Q Consensus 716 ~~~~~~v~Lp~~~-g~~w~~l~d~~~~~~~~~~~~~~~~ 753 (788)
...-..+-+|..+ ++.|.+|.|+....+.++...+.+.
T Consensus 698 ~~~~~iVl~sd~p~~~~~~rl~dt~~~~p~d~~~~g~~~ 736 (757)
T KOG0470|consen 698 PGKYTIVLNSDRPKGGGWNRLDDTALFFPYDFRSEGRPV 736 (757)
T ss_pred CCceEEEECCCCCCCCCccccccccccCccccccCCeee
Confidence 9988888888866 8899999999999888888777663
No 10
>PRK12568 glycogen branching enzyme; Provisional
Probab=100.00 E-value=4.1e-72 Score=644.94 Aligned_cols=584 Identities=19% Similarity=0.297 Sum_probs=404.2
Q ss_pred eecCCCC----CCCCcEEe----CCcEEEEEEcCCCCEEEEEEEeCCCccCCceeeEEecccccCCCCCEEEEEEcCCCC
Q 003901 89 QVSKGYP----TPFGATLR----DGGVNFSIFSSNAVSATLCLITLSDLQENKVTEEIALDSFANKTGDVWHVFLKGDFK 160 (788)
Q Consensus 89 ~~~~g~~----~~lGa~~~----~~~~~F~vwap~A~~V~L~l~~~~d~~~~~~~~~~~l~~~~~~~~gvW~~~i~~~~~ 160 (788)
.+.+|.. ..||||.. .+||+|+||||+|++|+|+ +|||.|+. ..+||.. +.+|+|+++||++.+
T Consensus 114 ~~~~g~~~~~y~~lGah~~~~~g~~Gv~FaVWAPnA~~VsVv----GDFN~Wdg-~~~pM~~---~~~GVWelfipg~~~ 185 (730)
T PRK12568 114 QIAAGDGQALRRALGAQHVQVGEVPGVRFAVWAPHAQRVAVV----GDFNGWDV-RRHPMRQ---RIGGFWELFLPRVEA 185 (730)
T ss_pred HHhCCchhhhHHhcCCeEeeECCCCcEEEEEECCCCCEEEEE----EecCCCCc-cceeccc---CCCCEEEEEECCCCC
Confidence 4555632 46999975 4589999999999999999 67777764 3567743 478999999999999
Q ss_pred CceeeEEEcCCcCCCCCcccCCcccccCcccceeeecccccCCCCCCCCCCcceecccCCCCCCCCCCCCC-----CCCC
Q 003901 161 DMLYGYKFDGKFSPQEGHYFDPTKIVLDPYAKAVISRAQFGVLGPDENCWPQMACLVPTPEDEFDWEGDLP-----LKYP 235 (788)
Q Consensus 161 ~~~Y~y~~~g~~~~~~g~~~~~~~~~~DPya~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~-----~~~~ 235 (788)
|..|+|+|.+. +|.. ..+.||||+++..+. ..++++.+ ...|+|+++.+ +..+
T Consensus 186 G~~YKYeI~~~----~G~~----~~k~DPYA~~~e~~p-------------~~asvV~~-~~~~~W~d~~W~~~r~~~~~ 243 (730)
T PRK12568 186 GARYKYAITAA----DGRV----LLKADPVARQTELPP-------------ATASVVPS-AAAFAWTDAAWMARRDPAAV 243 (730)
T ss_pred CCEEEEEEEcC----CCeE----eecCCCcceEeecCC-------------CCCeEEcC-CCCCCCCChhhhhcccccCC
Confidence 99999999753 3433 246899999985432 13455543 24688886643 2335
Q ss_pred CCCeEEEEEeccCcccCCCCCCCCCcCHHHHHhhh-HHHHHcCCCeEEECcccccCccCcccCCCCCCCcccCCCCC--C
Q 003901 236 QRDLIIYEVHVRGFTRHESSKTEHPGTYLGVVEKL-DHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYNYSSAGI--R 312 (788)
Q Consensus 236 ~~~~viYei~v~~Ft~~~~s~~~~~G~~~gl~~~L-~yLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~wgY~~~~~--~ 312 (788)
.++++|||+|+++|+.+.. ...++|+++++++ +|||+||||+||||||++++. .++|||++.++ +
T Consensus 244 ~~~~~IYEvHvgsf~~~~~---~~~~~~~~la~~ll~ylk~LGvt~I~LmPi~e~~~---------~~~wGY~~~~~~a~ 311 (730)
T PRK12568 244 PAPLSIYEVHAASWRRDGH---NQPLDWPTLAEQLIPYVQQLGFTHIELLPITEHPF---------GGSWGYQPLGLYAP 311 (730)
T ss_pred CCCcEEEEEEhHHhcCCCC---CCCCCHHHHHHHHHHHHHHcCCCEEEECccccCCC---------CCCCCCCCCcCCcc
Confidence 6899999999999998532 2357999999985 999999999999999998752 24589998887 8
Q ss_pred CCCCCcHHHHHHHHHHHHHcCCEEEEEeeeccccCCCCCCCccccCCCCCccceee-CC-CCCcccCCCCccccCCCCHH
Q 003901 313 NCGHDAINEFKLLVREAHKRGIEVVMDVVFNHTVEGNDKGPILSFRGVDNSVYYML-AP-KGEFYNYSGCGNTFNCNHPV 390 (788)
Q Consensus 313 ~~~~G~~~elk~lV~~aH~~Gi~VilDvV~NH~~~~~~~~~~~~~~~~~~~~yy~~-~~-~g~~~~~~g~~~dln~~~p~ 390 (788)
+++||+++|||+||++||++||+||||+|+||++.+.. . +..++...+|.. ++ .|.+.+|.. -.+|+.+|+
T Consensus 312 ~~~~G~~~dfk~lV~~~H~~Gi~VIlD~V~nH~~~d~~--~---l~~fdg~~~Ye~~d~~~g~~~~W~~--~~~N~~~pe 384 (730)
T PRK12568 312 TARHGSPDGFAQFVDACHRAGIGVILDWVSAHFPDDAH--G---LAQFDGAALYEHADPREGMHRDWNT--LIYNYGRPE 384 (730)
T ss_pred CcccCCHHHHHHHHHHHHHCCCEEEEEeccccCCcccc--c---cccCCCccccccCCCcCCccCCCCC--eecccCCHH
Confidence 99999999999999999999999999999999987532 1 122233333332 22 233334432 268999999
Q ss_pred HHHHHHHHHHHHHHhcCccEEEEeccccc-c----cCCCccccccccCccccCCccccCCCCCChHHHHHHHc--CCccc
Q 003901 391 VRQFIVDCLRYWVTEMHVDGFRFDLASIM-T----RGSSLWDSVNVYGIPIEGDLLTTGTPLRSPPLIDLISN--DPILR 463 (788)
Q Consensus 391 vr~~i~d~l~~W~~e~gVDGFR~D~a~~l-~----~~~~~w~~~~~~g~~~~~~~~~~g~~~~~~~~~~~i~~--~~~~~ 463 (788)
||++|+++++||+++|||||||+|++..| . +..+.|.+ +.+|...+.+ ...|++.+.. ....|
T Consensus 385 Vr~~li~~a~~Wl~eyhIDG~R~DAva~mly~d~~r~~g~w~p-n~~gg~en~e---------a~~Fl~~ln~~v~~~~P 454 (730)
T PRK12568 385 VTAYLLGSALEWIEHYHLDGLRVDAVASMLYRDYGRAEGEWVP-NAHGGRENLE---------AVAFLRQLNREIASQFP 454 (730)
T ss_pred HHHHHHHHHHHHHHHhCceEEEEcCHhHhhhhccccccccccc-cccCCccChH---------HHHHHHHHHHHHHHHCC
Confidence 99999999999999999999999987654 2 22234543 3333322111 1235555443 23457
Q ss_pred cceeeeeeccCC-CcccccccCCCCcccccchhHHHHHHHHHhCCCCcHHHHHHHHhCCCCccCCCCCCCCcceeecccC
Q 003901 464 GVKLIAEAWDTG-GLYQVGIFPHWGIWSEWNGKYRDIVRQFIKGTDGFAGAFAECLCGSPNLYQGGGRKPWNSINFVCAH 542 (788)
Q Consensus 464 ~~~ligE~w~~~-~~~~~~~~~~~~~~~~~n~~f~~~lr~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~p~~~vnfv~nH 542 (788)
++++|||.+..- +..........||+..||..+++.+.++++.+.-+...-...|+-+- .|. ......+..||
T Consensus 455 ~~~~IAEest~~p~vt~p~~~gGlGFd~kwn~gwm~d~l~y~~~dp~~r~~~h~~ltf~~-~y~-----~~e~fvlp~SH 528 (730)
T PRK12568 455 GVLTIAEESTAWPGVTAPISDGGLGFTHKWNMGWMHDTLHYMQRDPAERAHHHSQLTFGL-VYA-----FSERFVLPLSH 528 (730)
T ss_pred CeEEEEEcCCCCccccccccCCCCCcCcEeCChhHHHHHHHHhhCchhhhhhhhhhhhhh-hhh-----hhccEeccCCC
Confidence 999999975432 22111111245689999999999999998876433221111222110 110 01222367799
Q ss_pred CCcchhhhhhhcccccccCCCCCCCCCCCCCCCCcCCCCcchhHHHHHHHHHHHHHHHHHHHhcCCceEEecccccccCC
Q 003901 543 DGFSLADLVSYNQKHNLANGEDNNDGETHNNSWNCGQEGEFANILVKKLRRRQMRNFFLCLMVSQGVPMISMGDEYGHTK 622 (788)
Q Consensus 543 D~~rl~d~~~~~~~~n~~~g~~~~dg~~~~~sw~~g~~~~~~~~~~~~~~~~~~r~a~alllt~pGiP~Iy~GdE~G~~~ 622 (788)
|+.- .+|..+.. ..+|. ...+.+++|++++++|+.||.||||||+|||+.+
T Consensus 529 DEvv-------hgk~sl~~----------------kmpGd------~~~k~a~lR~~~~~~~~~PGkkLlFmG~Efgq~~ 579 (730)
T PRK12568 529 DEVV-------HGTGGLLG----------------QMPGD------DWRRFANLRAYLALMWAHPGDKLLFMGAEFGQWA 579 (730)
T ss_pred cccc-------cCchhhhh----------------cCCCC------HHHHHHHHHHHHHHHHhCCCcceeeCchhhCCcc
Confidence 9841 11111110 00111 0124677899999999999999999999999987
Q ss_pred CCCCCCcCCCCCccccccCcccC-cchHHHHHHHHHHHHHhhCccCCCCCCCCccceeeccCCCCCCCCCCCCcEEEEEE
Q 003901 623 GGNNNTYCHDNDINYFRWDKKEE-SKSDFFRFCCLLTKFRHECESLGLSDFPTADRLQWHGHAPGLPDWSDKSRFVAFTL 701 (788)
Q Consensus 623 ~g~~n~y~~~~~~~~~~W~~~~~-~~~~l~~~~r~Li~lRk~~~aL~~g~~~~~~~~~~~~~~~~~~~~~~~~~vlaf~r 701 (788)
..+.+ ..++|...+. ....+.+++|.|++||+++|||...++.. ..++|... -+.+.+|++|.|
T Consensus 580 ew~~~--------~~ldW~ll~~~~h~~~~~~~~dLn~ly~~~paL~~~d~~~-~gf~wi~~------~d~~~sv~af~R 644 (730)
T PRK12568 580 DWNHD--------QSLDWHLLDGARHRGMQQLVGDLNAALRRTPALYRGTHRA-DGFDWSVA------DDARNSVLAFIR 644 (730)
T ss_pred cccCC--------CCccccccCChhHHHHHHHHHHHHHHHHhChhhhcccCCC-CCeEEEeC------CCCCCcEEEEEE
Confidence 55432 4689998663 23689999999999999999999887655 45556432 234578999999
Q ss_pred EcCC--CCEEEEEEeCCCCcE---EEECCCCCCCCeEEEecCCCCCCCCccCCCCchhhhhhhhcCCCCCCeeEEeeCCe
Q 003901 702 IDSV--KGEIYVAFNASHLPV---IISLPKRPGYRWEPLVDTSKPEPFDFLSSDLPAKEIAIKQYAPFLDANLYPMLSYS 776 (788)
Q Consensus 702 ~~~~--~~~i~Vv~N~~~~~~---~v~Lp~~~g~~w~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~s 776 (788)
...+ ++.++||+|+++.+. .+.+|. .+.|+++++|......+...+......+....+..+..+..++|||++
T Consensus 645 ~~~~~~~~~v~vV~Nft~~~~~~Y~ig~p~--~G~~~eilNsd~~~ygG~~~~n~~~~~~~~~~~~g~~~s~~i~lppl~ 722 (730)
T PRK12568 645 HDPDGGGVPLLAVSNLTPQPHHDYRVGVPR--AGGWREILNTDSAHYGGSNLGNSGRLATEPTGMHGHAQSLRLTLPPLA 722 (730)
T ss_pred ecCCCCCCeEEEEECCCCCCccCeEECCCC--CCeEEEEEcCchhhhCCCCcCCCCceeecccccCCCccEEEEEeCCCE
Confidence 9754 356999999999754 466665 359999999987655443222211122223345667788999999999
Q ss_pred EEEEEec
Q 003901 777 SIILLLS 783 (788)
Q Consensus 777 ~~vl~~~ 783 (788)
++||...
T Consensus 723 ~~~~~~~ 729 (730)
T PRK12568 723 TIYLQAE 729 (730)
T ss_pred EEEEEEC
Confidence 9999865
No 11
>PRK14706 glycogen branching enzyme; Provisional
Probab=100.00 E-value=3.8e-71 Score=640.34 Aligned_cols=572 Identities=20% Similarity=0.298 Sum_probs=391.3
Q ss_pred CCCCcEEeCC----cEEEEEEcCCCCEEEEEEEeCCCccCCceeeEEecccccCCCCCEEEEEEcCCCCCceeeEEEcCC
Q 003901 96 TPFGATLRDG----GVNFSIFSSNAVSATLCLITLSDLQENKVTEEIALDSFANKTGDVWHVFLKGDFKDMLYGYKFDGK 171 (788)
Q Consensus 96 ~~lGa~~~~~----~~~F~vwap~A~~V~L~l~~~~d~~~~~~~~~~~l~~~~~~~~gvW~~~i~~~~~~~~Y~y~~~g~ 171 (788)
..||||..+. ||+|+||||+|++|+|+ ++|+.|.. ...||.+ ..+|+|+++||+..+|..|+|+|++.
T Consensus 25 ~~lGah~~~~~~~~Gv~FrvwAP~A~~V~Lv----gdfn~w~~-~~~pM~~---~~~GvW~~~vpg~~~g~~Yky~I~~~ 96 (639)
T PRK14706 25 HLLGAHPATEGGVEGVRFAVWAPGAQHVSVV----GDFNDWNG-FDHPMQR---LDFGFWGAFVPGARPGQRYKFRVTGA 96 (639)
T ss_pred HhcCccCccCCCcccEEEEEECCCCCEEEEE----EecCCccc-ccccccc---cCCCEEEEEECCCCCCCEEEEEEECC
Confidence 4799998653 79999999999999999 56777653 3467753 35699999999999999999999864
Q ss_pred cCCCCCcccCCcccccCcccceeeecccccCCCCCCCCCCcceecccCCCCCCCCCCCCCCC---C-CCCCeEEEEEecc
Q 003901 172 FSPQEGHYFDPTKIVLDPYAKAVISRAQFGVLGPDENCWPQMACLVPTPEDEFDWEGDLPLK---Y-PQRDLIIYEVHVR 247 (788)
Q Consensus 172 ~~~~~g~~~~~~~~~~DPya~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~---~-~~~~~viYei~v~ 247 (788)
.|... .+.||||+.+..+. ..+++|.+ ..|+|.++.+.. . ..++++|||+||+
T Consensus 97 ----~g~~~----~~~DPYa~~~~~~~-------------~~~svv~~--~~~~w~d~~w~~~~~~~~~~~~~IYE~Hvg 153 (639)
T PRK14706 97 ----AGQTV----DKMDPYGSFFEVRP-------------NTASIIWE--DRFEWTDTRWMSSRTAGFDQPISIYEVHVG 153 (639)
T ss_pred ----CCCEE----eccCcceEEEecCC-------------CCceEECC--CCCCCCCcccccccCCccCCCcEEEEEehh
Confidence 33332 36899999985432 12345543 359998766532 1 2346999999999
Q ss_pred CcccCCCCCCCCCcCHHHHHhhh-HHHHHcCCCeEEECcccccCccCcccCCCCCCCcccCCCCC--CCCCCCcHHHHHH
Q 003901 248 GFTRHESSKTEHPGTYLGVVEKL-DHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYNYSSAGI--RNCGHDAINEFKL 324 (788)
Q Consensus 248 ~Ft~~~~s~~~~~G~~~gl~~~L-~yLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~wgY~~~~~--~~~~~G~~~elk~ 324 (788)
+|+.... ...|+|++++++| +|||+||||+||||||++++ ..++|||++.+| ++++||+++|||+
T Consensus 154 ~f~~~~~---g~~~ty~~~~~~l~~ylk~lG~t~velmPv~e~~---------~~~~wGY~~~~~~~~~~~~g~~~~~~~ 221 (639)
T PRK14706 154 SWARRDD---GWFLNYRELAHRLGEYVTYMGYTHVELLGVMEHP---------FDGSWGYQVTGYYAPTSRLGTPEDFKY 221 (639)
T ss_pred hcccCCC---CCccCHHHHHHHHHHHHHHcCCCEEEccchhcCC---------CCCCCCcCcccccccccccCCHHHHHH
Confidence 9987421 2258999999997 99999999999999999975 234599999988 8999999999999
Q ss_pred HHHHHHHcCCEEEEEeeeccccCCCCCCCccccCCCCCccce-eeCC-CCCcccCCCCccccCCCCHHHHHHHHHHHHHH
Q 003901 325 LVREAHKRGIEVVMDVVFNHTVEGNDKGPILSFRGVDNSVYY-MLAP-KGEFYNYSGCGNTFNCNHPVVRQFIVDCLRYW 402 (788)
Q Consensus 325 lV~~aH~~Gi~VilDvV~NH~~~~~~~~~~~~~~~~~~~~yy-~~~~-~g~~~~~~g~~~dln~~~p~vr~~i~d~l~~W 402 (788)
||++||++||+||||+|+||++.+... +..+++..+| ..++ .|...+|.. ..+|+.+|+||++|+++++||
T Consensus 222 lv~~~H~~gi~VilD~v~nH~~~~~~~-----l~~~dg~~~y~~~~~~~g~~~~w~~--~~~~~~~~eVr~~l~~~~~~W 294 (639)
T PRK14706 222 LVNHLHGLGIGVILDWVPGHFPTDESG-----LAHFDGGPLYEYADPRKGYHYDWNT--YIFDYGRNEVVMFLIGSALKW 294 (639)
T ss_pred HHHHHHHCCCEEEEEecccccCcchhh-----hhccCCCcceeccCCcCCcCCCCCC--cccCCCCHHHHHHHHHHHHHH
Confidence 999999999999999999999875321 2223333333 2222 243334432 258999999999999999999
Q ss_pred HHhcCccEEEEecccccc-cCC--CccccccccCccccCCccccCCCCCChHHHHHHHc--CCccccceeeeeeccCC-C
Q 003901 403 VTEMHVDGFRFDLASIMT-RGS--SLWDSVNVYGIPIEGDLLTTGTPLRSPPLIDLISN--DPILRGVKLIAEAWDTG-G 476 (788)
Q Consensus 403 ~~e~gVDGFR~D~a~~l~-~~~--~~w~~~~~~g~~~~~~~~~~g~~~~~~~~~~~i~~--~~~~~~~~ligE~w~~~-~ 476 (788)
++||||||||||++..|- .+. ..|. .+.+|+..+.+ ...+++.++. ....|++++|||.|..- .
T Consensus 295 ~~e~~iDG~R~Dav~~~ly~d~~~~~~~-~~~~gg~~n~~---------a~~fl~~ln~~v~~~~p~~~~iAE~~~~~~~ 364 (639)
T PRK14706 295 LQDFHVDGLRVDAVASMLYLDFSRTEWV-PNIHGGRENLE---------AIAFLKRLNEVTHHMAPGCMMIAEESTSFPG 364 (639)
T ss_pred HHHhCCCeEEEeeehheeecccCccccc-ccccCCcccHH---------HHHHHHHHHHHHHHhCCCeEEEEECCCCCcC
Confidence 999999999999877652 211 1122 13444322211 2235555543 12346899999998642 2
Q ss_pred cccccccCCCCcccccchhHHHHHHHHHhCCCCcHHHHHH-HHhCCCCccCCCCCCCCcceeecccCCCcchhh--hhhh
Q 003901 477 LYQVGIFPHWGIWSEWNGKYRDIVRQFIKGTDGFAGAFAE-CLCGSPNLYQGGGRKPWNSINFVCAHDGFSLAD--LVSY 553 (788)
Q Consensus 477 ~~~~~~~~~~~~~~~~n~~f~~~lr~~~~g~~~~~~~~~~-~l~~~~~~~~~~~~~p~~~vnfv~nHD~~rl~d--~~~~ 553 (788)
+..... ...||++.||+.+.+.+..+++.+.... .+.. .+..+ ..| ....+.| |++|||+.+... ++.
T Consensus 365 v~~~~~-~G~gFD~~w~~~w~~~~l~~~~~~~~~r-~~~~~~lt~~-~~y----~~~e~~i-l~~SHDev~~~k~sl~~- 435 (639)
T PRK14706 365 VTVPTP-YGLGFDYKWAMGWMNDTLAYFEQDPLWR-KYHHHKLTFF-NVY----RTSENYV-LAISHDEVVHLKKSMVM- 435 (639)
T ss_pred cccccC-CCCccccEeccHHHHHHHHHhccCchhh-hhchhccchh-hhh----hccccEe-cCCCCccccCCccchHh-
Confidence 221111 2467999999999888877776543221 1111 11100 111 1112223 789999875321 110
Q ss_pred cccccccCCCCCCCCCCCCCCCCcCCCCcchhHHHHHHHHHHHHHHHHHHHhcCCceEEecccccccCCCCCCCCcCCCC
Q 003901 554 NQKHNLANGEDNNDGETHNNSWNCGQEGEFANILVKKLRRRQMRNFFLCLMVSQGVPMISMGDEYGHTKGGNNNTYCHDN 633 (788)
Q Consensus 554 ~~~~n~~~g~~~~dg~~~~~sw~~g~~~~~~~~~~~~~~~~~~r~a~alllt~pGiP~Iy~GdE~G~~~~g~~n~y~~~~ 633 (788)
...|. ...+.+++|++++++||+||+||||||+|+|..+.. +
T Consensus 436 -----k~~g~-------------------------~~~~~a~~r~~~~~~~t~PG~pLiFmG~EfG~~~ew--------~ 477 (639)
T PRK14706 436 -----KMPGD-------------------------WYTQRAQYRAFLAMMWTTPGKKLLFMGQEFAQGTEW--------N 477 (639)
T ss_pred -----HcCCC-------------------------HHHHHHHHHHHHHHHHhCCCCcEEEeccccCCCCCC--------C
Confidence 00010 012356788899999999999999999999975332 1
Q ss_pred CccccccCcccC-cchHHHHHHHHHHHHHhhCccCCCCCCCCccceeeccCCCCCCCCCCCCcEEEEEEEcCCC-CEEEE
Q 003901 634 DINYFRWDKKEE-SKSDFFRFCCLLTKFRHECESLGLSDFPTADRLQWHGHAPGLPDWSDKSRFVAFTLIDSVK-GEIYV 711 (788)
Q Consensus 634 ~~~~~~W~~~~~-~~~~l~~~~r~Li~lRk~~~aL~~g~~~~~~~~~~~~~~~~~~~~~~~~~vlaf~r~~~~~-~~i~V 711 (788)
...+++|...+. ....+.+|+|+|++||+++|+|+.+++.. ..++|... -+.+.+|++|.|...++ +.++|
T Consensus 478 ~~~~l~W~l~~~~~~~~l~~~~k~L~~L~k~~paL~~gd~~~-~~f~wi~~------~d~~~~VlaF~R~~~~~~~~vlv 550 (639)
T PRK14706 478 HDASLPWYLTDVPDHRGVMNLVRRLNQLYRERPDWHRGDKRE-EGLYWVSA------DDTDNSVYAYVRRDSESGAWSLA 550 (639)
T ss_pred cccCCCCcccCCHHHHHHHHHHHHHHHHHHhCHHHhhCCCCC-CCeEEEEe------ecCCCCEEEEEEecCCCCeeEEE
Confidence 345789987652 23579999999999999999999988654 23333211 12357899999997543 35999
Q ss_pred EEeCCCC---cEEEECCCCCCCCeEEEecCCCCCCCCccCCCCchhhhhhhhcCCCCCCeeEEeeCCeEEEEEecC
Q 003901 712 AFNASHL---PVIISLPKRPGYRWEPLVDTSKPEPFDFLSSDLPAKEIAIKQYAPFLDANLYPMLSYSSIILLLSP 784 (788)
Q Consensus 712 v~N~~~~---~~~v~Lp~~~g~~w~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~~vl~~~~ 784 (788)
|+|+++. ...+.+|. .+.|+++++|......+....... ..+...++..+..+..++|||++++||....
T Consensus 551 V~Nfs~~~~~~y~ig~p~--~g~~~~i~nsd~~~~gG~g~~n~~-~~~~~~~~~g~~~si~i~lp~~~~~~~~~~~ 623 (639)
T PRK14706 551 VANLTPVYREQYRIGVPQ--GGEYRVLLSTDDGEYGGFGTQQPD-LMASQEGWHGQPHSLSLNLPPSSVLILEFVG 623 (639)
T ss_pred EEeCCCCCcCCeEECCCC--CCeEEEEEcCCccccCCCCCCCCc-eeccccccCCCccEEEEEeCCcEEEEEEECC
Confidence 9999984 44566664 459999999987654443222211 1112223455566889999999999998764
No 12
>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase. Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.
Probab=100.00 E-value=9e-72 Score=639.75 Aligned_cols=472 Identities=26% Similarity=0.411 Sum_probs=343.2
Q ss_pred EEEEEEcCCCCEEEEEEEeCCCccCCceeeEEecccccCCCCCEEEEEEcCCCCCceeeEEEcCCcCCCCCcccCCcccc
Q 003901 107 VNFSIFSSNAVSATLCLITLSDLQENKVTEEIALDSFANKTGDVWHVFLKGDFKDMLYGYKFDGKFSPQEGHYFDPTKIV 186 (788)
Q Consensus 107 ~~F~vwap~A~~V~L~l~~~~d~~~~~~~~~~~l~~~~~~~~gvW~~~i~~~~~~~~Y~y~~~g~~~~~~g~~~~~~~~~ 186 (788)
|+|+||||+|++|+|+++. ..++|.+ ..+|+|+++++++.+|++|.|+|+|. ..+
T Consensus 1 v~FrlwAP~A~~V~L~l~~----------~~~~m~k---~~~GvW~~~v~~~~~G~~Y~y~v~g~------------~~v 55 (542)
T TIGR02402 1 VRFRLWAPTAASVKLRLNG----------ALHAMQR---LGDGWFEITVPPVGPGDRYGYVLDDG------------TPV 55 (542)
T ss_pred CEEEEECCCCCEEEEEeCC----------CEEeCeE---CCCCEEEEEECCCCCCCEEEEEEeee------------EEe
Confidence 5899999999999999731 1567743 46799999999999999999999852 247
Q ss_pred cCcccceeeecccccCCCCCCCCCCcceecccCCCCCCCCCCCCCCCCCCCCeEEEEEeccCcccCCCCCCCCCcCHHHH
Q 003901 187 LDPYAKAVISRAQFGVLGPDENCWPQMACLVPTPEDEFDWEGDLPLKYPQRDLIIYEVHVRGFTRHESSKTEHPGTYLGV 266 (788)
Q Consensus 187 ~DPya~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~viYei~v~~Ft~~~~s~~~~~G~~~gl 266 (788)
+||||+++.. ++.+ .++|.+. ..|+|+++.++..+++++||||+||++|+. .|||+||
T Consensus 56 ~DPya~~~~~----~~~~---------~S~V~d~-~~~~w~~~~~~~~~~~~~viYE~hv~~f~~--------~G~~~gi 113 (542)
T TIGR02402 56 PDPASRRQPD----GVHG---------PSQVVDP-DRYAWQDTGWRGRPLEEAVIYELHVGTFTP--------EGTFDAA 113 (542)
T ss_pred cCcccccccc----CCCC---------CeEEecC-cccCCCCccccCCCccccEEEEEEhhhcCC--------CCCHHHH
Confidence 8999998632 1111 2444442 469999888877789999999999999987 6999999
Q ss_pred HhhhHHHHHcCCCeEEECcccccCccCcccCCCCCCCcccCCCCC--CCCCCCcHHHHHHHHHHHHHcCCEEEEEeeecc
Q 003901 267 VEKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYNYSSAGI--RNCGHDAINEFKLLVREAHKRGIEVVMDVVFNH 344 (788)
Q Consensus 267 ~~~L~yLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~wgY~~~~~--~~~~~G~~~elk~lV~~aH~~Gi~VilDvV~NH 344 (788)
+++|+|||+||||+||||||++++.. .+|||++.++ ++++||+++|||+||++||++||+||||+|+||
T Consensus 114 ~~~l~yl~~LGv~~i~L~Pi~~~~~~---------~~~GY~~~~~~~~~~~~G~~~e~k~lV~~aH~~Gi~VilD~V~NH 184 (542)
T TIGR02402 114 IEKLPYLADLGITAIELMPVAQFPGT---------RGWGYDGVLPYAPHNAYGGPDDLKALVDAAHGLGLGVILDVVYNH 184 (542)
T ss_pred HHhhHHHHHcCCCEEEeCccccCCCC---------CCCCCCccCccccccccCCHHHHHHHHHHHHHCCCEEEEEEccCC
Confidence 99999999999999999999987532 3489999887 899999999999999999999999999999999
Q ss_pred ccCCCCCCCccccCCCCCccceeeCCCCCcccCCCCccccCCCCH---HHHHHHHHHHHHHHHhcCccEEEEeccccccc
Q 003901 345 TVEGNDKGPILSFRGVDNSVYYMLAPKGEFYNYSGCGNTFNCNHP---VVRQFIVDCLRYWVTEMHVDGFRFDLASIMTR 421 (788)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~yy~~~~~g~~~~~~g~~~dln~~~p---~vr~~i~d~l~~W~~e~gVDGFR~D~a~~l~~ 421 (788)
++.++.... ... + ||... ..++||+++|+++| +||++|++++++|+++|||||||||++..+..
T Consensus 185 ~~~~~~~~~-----~~~-~-y~~~~------~~~~wg~~~n~~~~~~~~vr~~i~~~~~~W~~e~~iDGfR~D~~~~~~~ 251 (542)
T TIGR02402 185 FGPEGNYLP-----RYA-P-YFTDR------YSTPWGAAINFDGPGSDEVRRYILDNALYWLREYHFDGLRLDAVHAIAD 251 (542)
T ss_pred CCCcccccc-----ccC-c-cccCC------CCCCCCCccccCCCcHHHHHHHHHHHHHHHHHHhCCcEEEEeCHHHhcc
Confidence 986543211 112 2 54321 23567889999999 99999999999999999999999999998864
Q ss_pred CC--CccccccccCccccCCccccCCCCCChHHHHHHHcCCcccc---ceeeeeeccCC-CcccccccCCCCcccccchh
Q 003901 422 GS--SLWDSVNVYGIPIEGDLLTTGTPLRSPPLIDLISNDPILRG---VKLIAEAWDTG-GLYQVGIFPHWGIWSEWNGK 495 (788)
Q Consensus 422 ~~--~~w~~~~~~g~~~~~~~~~~g~~~~~~~~~~~i~~~~~~~~---~~ligE~w~~~-~~~~~~~~~~~~~~~~~n~~ 495 (788)
.. .||++ +.+.++. +.++ ++||||.|... ...........++++.||+.
T Consensus 252 ~~~~~~l~~-----------------------~~~~~~~--~~p~~~~~~li~E~~~~~~~~~~~~~~~~~~~d~~~~~~ 306 (542)
T TIGR02402 252 TSAKHILEE-----------------------LAREVHE--LAAELRPVHLIAESDLNDPSLVTPREDGGYGLDAQWNDD 306 (542)
T ss_pred ccHHHHHHH-----------------------HHHHHHH--HCCCCceEEEEEecCCCCCcccccccCCccceEEEECch
Confidence 21 24443 2222322 2234 89999988432 22211111234578999999
Q ss_pred HHHHHHHHHhCCC-Cc-------HHHHHHHHhCC------CCccC-------CCCCCCCcceeecccCCC---cchhhhh
Q 003901 496 YRDIVRQFIKGTD-GF-------AGAFAECLCGS------PNLYQ-------GGGRKPWNSINFVCAHDG---FSLADLV 551 (788)
Q Consensus 496 f~~~lr~~~~g~~-~~-------~~~~~~~l~~~------~~~~~-------~~~~~p~~~vnfv~nHD~---~rl~d~~ 551 (788)
|++.++.+++|.. ++ ...+...|... ...+. .....+.+.|||++|||+ .++.+.+
T Consensus 307 ~~~~~~~~~~g~~~g~~~~~~~~~~~l~~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~vnfl~nHD~~gn~~~~~Rl 386 (542)
T TIGR02402 307 FHHALHVLLTGERQGYYADFGDPLAALAKTLRDGFVYDGEYSPFRGRPHGRPSGDLPPHRFVVFIQNHDQIGNRALGERL 386 (542)
T ss_pred HHHHHHHHhcCCcceeecccCcCHHHHHHHHHHhcccCccccccccccCCCCCCCCCHHHEEEEccCcccccccchhhhh
Confidence 9999999998753 22 23444444321 00010 001245678999999995 3333322
Q ss_pred hhcccccccCCCCCCCCCCCCCCCCcCCCCcchhHHHHHHHHHHHHHHHHHHHhcCCceEEecccccccCCCCC------
Q 003901 552 SYNQKHNLANGEDNNDGETHNNSWNCGQEGEFANILVKKLRRRQMRNFFLCLMVSQGVPMISMGDEYGHTKGGN------ 625 (788)
Q Consensus 552 ~~~~~~n~~~g~~~~dg~~~~~sw~~g~~~~~~~~~~~~~~~~~~r~a~alllt~pGiP~Iy~GdE~G~~~~g~------ 625 (788)
.. .+..+++++|++++||+||+||||||||+|+++...
T Consensus 387 ~~------------------------------------~~~~~~~~la~alllt~pGiP~Iy~GqE~g~~~~~~ff~d~~ 430 (542)
T TIGR02402 387 SQ------------------------------------LLSPGSLKLAAALLLLSPYTPLLFMGEEYGATTPFQFFTDHP 430 (542)
T ss_pred hh------------------------------------cCCHHHHHHHHHHHHHcCCCceeeccHhhcCCCCCccccCCC
Confidence 10 011356789999999999999999999999998520
Q ss_pred C--------------------------CCcCCC-CCccccccCcccC-cchHHHHHHHHHHHHHhhCccCCCCCCCCccc
Q 003901 626 N--------------------------NTYCHD-NDINYFRWDKKEE-SKSDFFRFCCLLTKFRHECESLGLSDFPTADR 677 (788)
Q Consensus 626 ~--------------------------n~y~~~-~~~~~~~W~~~~~-~~~~l~~~~r~Li~lRk~~~aL~~g~~~~~~~ 677 (788)
+ ++.+.. ..++.++|+..+. ...++++|+|+||+|||++++|+.++...+.
T Consensus 431 ~~~l~~~v~~gr~~e~~~~~~~~~~~pdp~~~~~~~~~~~~W~~~~~~~~~~~~~~yr~Li~lRk~~~~l~~~~~~~~~- 509 (542)
T TIGR02402 431 DPELAQAVREGRKKEFARFGWDPEDVPDPQDEETFLRSKLDWAEAESGEHARWLAFYRDLLALRRELPVLLLPGARALE- 509 (542)
T ss_pred CHHHHHHHHHhHHHHHHhcccccccCCCCCchhhHhhccCCcccccccchHHHHHHHHHHHHHhccCccccCCCcccce-
Confidence 0 010100 1357899988752 3478999999999999999999988754421
Q ss_pred eeeccCCCCCCCCCCCCcEEEEEEEcCCCCEEEEEEeCCCCcEEE
Q 003901 678 LQWHGHAPGLPDWSDKSRFVAFTLIDSVKGEIYVAFNASHLPVII 722 (788)
Q Consensus 678 ~~~~~~~~~~~~~~~~~~vlaf~r~~~~~~~i~Vv~N~~~~~~~v 722 (788)
.. ...+++++++.. + +++++|++|+++.++++
T Consensus 510 --~~--------~~~~~~~~~~~~--~-~~~~~v~~N~~~~~~~~ 541 (542)
T TIGR02402 510 --VV--------VDEDPGWVAVRF--G-RGELVLAANLSTSPVAV 541 (542)
T ss_pred --ee--------ecCCCCEEEEEE--C-CCeEEEEEeCCCCCcCC
Confidence 10 123567888872 3 36799999999877653
No 13
>PRK12313 glycogen branching enzyme; Provisional
Probab=100.00 E-value=7.8e-71 Score=646.68 Aligned_cols=573 Identities=20% Similarity=0.311 Sum_probs=386.5
Q ss_pred CCCCcEEeCC----cEEEEEEcCCCCEEEEEEEeCCCccCCceeeEEecccccCCCCCEEEEEEcCCCCCceeeEEEcCC
Q 003901 96 TPFGATLRDG----GVNFSIFSSNAVSATLCLITLSDLQENKVTEEIALDSFANKTGDVWHVFLKGDFKDMLYGYKFDGK 171 (788)
Q Consensus 96 ~~lGa~~~~~----~~~F~vwap~A~~V~L~l~~~~d~~~~~~~~~~~l~~~~~~~~gvW~~~i~~~~~~~~Y~y~~~g~ 171 (788)
.+||||.... +|+|+||||+|++|+|+ ++|++|.. ..++|.+ ..+|+|++++|+..++..|+|+|...
T Consensus 25 ~~lGah~~~~~~~~gv~Frv~AP~A~~V~v~----gdfn~w~~-~~~~m~~---~~~Gvw~~~i~~~~~g~~Y~y~v~~~ 96 (633)
T PRK12313 25 EYLGAHLEEVDGEKGTYFRVWAPNAQAVSVV----GDFNDWRG-NAHPLVR---RESGVWEGFIPGAKEGQLYKYHISRQ 96 (633)
T ss_pred hcCCcEEeccCCcccEEEEEECCCCCEEEEE----EecCCCCc-ccccccc---cCCCEEEEEeCCCCCCCEEEEEEECC
Confidence 5799999877 89999999999999999 67777753 3466743 36799999999999999999999632
Q ss_pred cCCCCCcccCCcccccCcccceeeecccccCCCCCCCCCCcceecccCCCCCCCCCCCCCC------CCCCCCeEEEEEe
Q 003901 172 FSPQEGHYFDPTKIVLDPYAKAVISRAQFGVLGPDENCWPQMACLVPTPEDEFDWEGDLPL------KYPQRDLIIYEVH 245 (788)
Q Consensus 172 ~~~~~g~~~~~~~~~~DPya~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~------~~~~~~~viYei~ 245 (788)
.|.. ..+.||||+++..+. ..++++.+ .+.|.|+++.+. ..+.++++|||+|
T Consensus 97 ----~g~~----~~~~DPya~~~~~~~-------------~~~s~v~d-~~~~~w~~~~~~~~~~~~~~~~~~~~iYe~h 154 (633)
T PRK12313 97 ----DGYQ----VEKIDPFAFYFEARP-------------GTASIVWD-LPEYKWKDGLWLARRKRWNALDRPISIYEVH 154 (633)
T ss_pred ----CCeE----EecCCCceEEEecCC-------------CCceEECC-CcccCCCChhhhhccccCCCCCCCceEEEEe
Confidence 2322 236899999985431 12345544 246899876542 1234789999999
Q ss_pred ccCcccCCCCCCCCCcCHHHHHhhh-HHHHHcCCCeEEECcccccCccCcccCCCCCCCcccCCCCC--CCCCCCcHHHH
Q 003901 246 VRGFTRHESSKTEHPGTYLGVVEKL-DHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYNYSSAGI--RNCGHDAINEF 322 (788)
Q Consensus 246 v~~Ft~~~~s~~~~~G~~~gl~~~L-~yLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~wgY~~~~~--~~~~~G~~~el 322 (788)
|++|+.++ ....|||++++++| +|||+||||+||||||++++. ..+|||++.+| ++++||+++||
T Consensus 155 v~~f~~~~---~~~~g~~~~~~~~ll~yl~~LGv~~i~L~Pi~~~~~---------~~~~GY~~~~y~~i~~~~Gt~~d~ 222 (633)
T PRK12313 155 LGSWKRNE---DGRPLSYRELADELIPYVKEMGYTHVEFMPLMEHPL---------DGSWGYQLTGYFAPTSRYGTPEDF 222 (633)
T ss_pred hhccccCC---CCCccCHHHHHHHHHHHHHHcCCCEEEeCchhcCCC---------CCCCCCCCcCcCcCCCCCCCHHHH
Confidence 99999854 23469999999995 999999999999999999752 24589999988 89999999999
Q ss_pred HHHHHHHHHcCCEEEEEeeeccccCCCCCCCccccCCCCCcccee-eCCC-CCcccCCCCccccCCCCHHHHHHHHHHHH
Q 003901 323 KLLVREAHKRGIEVVMDVVFNHTVEGNDKGPILSFRGVDNSVYYM-LAPK-GEFYNYSGCGNTFNCNHPVVRQFIVDCLR 400 (788)
Q Consensus 323 k~lV~~aH~~Gi~VilDvV~NH~~~~~~~~~~~~~~~~~~~~yy~-~~~~-g~~~~~~g~~~dln~~~p~vr~~i~d~l~ 400 (788)
|+||++||++||+||||+|+||++.++... ..+. ...+|. .++. +....|. ..+||+++|+||++|+++++
T Consensus 223 k~lv~~~H~~Gi~VilD~V~nH~~~~~~~~--~~~~---~~~~~~~~~~~~~~~~~w~--~~~~n~~~~~vr~~l~~~~~ 295 (633)
T PRK12313 223 MYLVDALHQNGIGVILDWVPGHFPKDDDGL--AYFD---GTPLYEYQDPRRAENPDWG--ALNFDLGKNEVRSFLISSAL 295 (633)
T ss_pred HHHHHHHHHCCCEEEEEECCCCCCCCcccc--cccC---CCcceeecCCCCCcCCCCC--CcccCCCCHHHHHHHHHHHH
Confidence 999999999999999999999998764321 1122 222332 2322 2222232 36899999999999999999
Q ss_pred HHHHhcCccEEEEeccccc-ccCCC---ccccccccCccccCCccccCCCCCChHHHHHHHc--CCccccceeeeeeccC
Q 003901 401 YWVTEMHVDGFRFDLASIM-TRGSS---LWDSVNVYGIPIEGDLLTTGTPLRSPPLIDLISN--DPILRGVKLIAEAWDT 474 (788)
Q Consensus 401 ~W~~e~gVDGFR~D~a~~l-~~~~~---~w~~~~~~g~~~~~~~~~~g~~~~~~~~~~~i~~--~~~~~~~~ligE~w~~ 474 (788)
+|+++|||||||||++..+ ..+.. -|.. +.+|... ......+++.+.. ....|++++|||.|..
T Consensus 296 ~W~~~~~iDG~R~D~~~~~~~~d~~~~~~~~~-~~~~~~~---------~~~~~~fl~~~~~~v~~~~p~~~liaE~~~~ 365 (633)
T PRK12313 296 FWLDEYHLDGLRVDAVSNMLYLDYDEEGEWTP-NKYGGRE---------NLEAIYFLQKLNEVVYLEHPDVLMIAEESTA 365 (633)
T ss_pred HHHHHhCCcEEEEcChhhhhhcccccccCcCC-cccCCCC---------CcHHHHHHHHHHHHHHHHCCCeEEEEECCCC
Confidence 9999999999999988644 22211 1221 1111100 0111234444432 1245689999998743
Q ss_pred CC-cccccccCCCCcccccchhHHHHHHHHHhCCCCcHH----HHHHHHhCCCCccCCCCCCCCcceeecccCCCc----
Q 003901 475 GG-LYQVGIFPHWGIWSEWNGKYRDIVRQFIKGTDGFAG----AFAECLCGSPNLYQGGGRKPWNSINFVCAHDGF---- 545 (788)
Q Consensus 475 ~~-~~~~~~~~~~~~~~~~n~~f~~~lr~~~~g~~~~~~----~~~~~l~~~~~~~~~~~~~p~~~vnfv~nHD~~---- 545 (788)
.. +.........++++.||..|...+..++.....+.. .+...+.. .+. ...+++.|||+.
T Consensus 366 ~~~~~~~~~~gg~gfd~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-------e~~~l~~sHD~~~~g~ 435 (633)
T PRK12313 366 WPKVTGPVEVGGLGFDYKWNMGWMNDTLRYFEEDPIYRKYHHNLLTFSFMY---AFS-------ENFVLPFSHDEVVHGK 435 (633)
T ss_pred CccccccccCCCCCcCceeCcHHHHHHHHHhhhCccccccccccchHHHhh---hhh-------cccccCCCCcccccCC
Confidence 31 111111223468899999999888888765422110 00001110 010 112467899984
Q ss_pred -chhhhhhhcccccccCCCCCCCCCCCCCCCCcCCCCcchhHHHHHHHHHHHHHHHHHHHhcCCceEEecccccccCCCC
Q 003901 546 -SLADLVSYNQKHNLANGEDNNDGETHNNSWNCGQEGEFANILVKKLRRRQMRNFFLCLMVSQGVPMISMGDEYGHTKGG 624 (788)
Q Consensus 546 -rl~d~~~~~~~~n~~~g~~~~dg~~~~~sw~~g~~~~~~~~~~~~~~~~~~r~a~alllt~pGiP~Iy~GdE~G~~~~g 624 (788)
|+...+. |+ ......++|++++++||+||+||||||+|+|+.+..
T Consensus 436 ~~~~~~~~---------g~-------------------------~~~~~~~~r~~~~~~~t~pG~Plif~G~E~g~~~~~ 481 (633)
T PRK12313 436 KSLMHKMP---------GD-------------------------RWQQFANLRLLYTYMITHPGKKLLFMGSEFGQFLEW 481 (633)
T ss_pred ccHHHhcC---------CC-------------------------HHHHHHHHHHHHHHHHhCCCCcEeecccccccCccC
Confidence 4333221 00 011245688899999999999999999999997643
Q ss_pred CCCCcCCCCCccccccCcccC-cchHHHHHHHHHHHHHhhCccCCCCCCCCccceeeccCCCCCCCCCCCCcEEEEEEEc
Q 003901 625 NNNTYCHDNDINYFRWDKKEE-SKSDFFRFCCLLTKFRHECESLGLSDFPTADRLQWHGHAPGLPDWSDKSRFVAFTLID 703 (788)
Q Consensus 625 ~~n~y~~~~~~~~~~W~~~~~-~~~~l~~~~r~Li~lRk~~~aL~~g~~~~~~~~~~~~~~~~~~~~~~~~~vlaf~r~~ 703 (788)
. ..+.|+|+..+. ...++++|+|+||+||+++|+|+.+++.. ..++|... ...++++++|.|..
T Consensus 482 ~--------~~~~l~W~~~~~~~~~~l~~~~r~Li~LRr~~paL~~~d~~~-~~~~~l~~------~~~~~~vlaf~R~~ 546 (633)
T PRK12313 482 K--------HDESLEWHLLEDPMNAGMQRFTSDLNQLYKDEPALWELDFSP-DGFEWIDA------DDADQSVLSFIRKG 546 (633)
T ss_pred C--------ccCCCCccccCChhHHHHHHHHHHHHHHHHhChHhhcccCCC-CCcEEEEC------cCCCCCEEEEEEeC
Confidence 2 235799997542 23789999999999999999999876532 22333211 12246899999987
Q ss_pred -CCCCEEEEEEeCCCCcEE-EECCCCCCCCeEEEecCCCCCCCCccCCCCchhhhhhhhcCCCCCCeeEEeeCCeEEEEE
Q 003901 704 -SVKGEIYVAFNASHLPVI-ISLPKRPGYRWEPLVDTSKPEPFDFLSSDLPAKEIAIKQYAPFLDANLYPMLSYSSIILL 781 (788)
Q Consensus 704 -~~~~~i~Vv~N~~~~~~~-v~Lp~~~g~~w~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~~vl~ 781 (788)
..++.++||+|++..++. +.|+.+.++.|++++++......+..........+.-..+.....+..+.|||+|++||.
T Consensus 547 ~~~~~~llvv~N~s~~~~~~y~i~~p~~g~~~~ilnsd~~~ygG~~~~~~~~~~~~~~~~~g~~~~~~i~ip~~s~~v~~ 626 (633)
T PRK12313 547 KNKGDFLVVVFNFTPVEREDYRIGVPVAGIYEEILNTDSEEFGGSGKGNNGTVKAQEGPWHGRPQSLTLTLPPLGALVLK 626 (633)
T ss_pred CCCCceEEEEEeCCCCcccceeECCCCCCeEEEEEcCCchhcCCCCcCCCCceeecccccCCCCCEEEEEeCCCEEEEEE
Confidence 234789999999986542 333332335999999988765332211111111111112344556778999999999999
Q ss_pred ecCCC
Q 003901 782 LSPDE 786 (788)
Q Consensus 782 ~~~~~ 786 (788)
.+++.
T Consensus 627 ~~~~~ 631 (633)
T PRK12313 627 PKRRL 631 (633)
T ss_pred Ecccc
Confidence 98865
No 14
>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase. A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.
Probab=100.00 E-value=1.5e-70 Score=639.74 Aligned_cols=567 Identities=19% Similarity=0.297 Sum_probs=376.3
Q ss_pred CCCCcEEeC----CcEEEEEEcCCCCEEEEEEEeCCCccCCceeeEEecccccCCCCCEEEEEEcCCCCCceeeEEEcCC
Q 003901 96 TPFGATLRD----GGVNFSIFSSNAVSATLCLITLSDLQENKVTEEIALDSFANKTGDVWHVFLKGDFKDMLYGYKFDGK 171 (788)
Q Consensus 96 ~~lGa~~~~----~~~~F~vwap~A~~V~L~l~~~~d~~~~~~~~~~~l~~~~~~~~gvW~~~i~~~~~~~~Y~y~~~g~ 171 (788)
..||||..+ ++|+|+||||+|++|+|++ ++++|.. ...+|.+ ...+|+|+++||+..+|..|+|+|...
T Consensus 15 ~~LGah~~~~~~~~g~~FrvwAP~A~~V~L~~----dfn~w~~-~~~~m~~--~~~~Gvw~~~i~~~~~g~~Y~y~v~~~ 87 (613)
T TIGR01515 15 ELLGSHYMELDGVSGTRFCVWAPNAREVRVAG----DFNYWDG-REHPMRR--RNDNGIWELFIPGIGEGELYKYEIVTN 87 (613)
T ss_pred HhcCceEeccCCcCcEEEEEECCCCCEEEEEE----ecCCCCC-ceecceE--ecCCCEEEEEeCCCCCCCEEEEEEECC
Confidence 479999987 7999999999999999994 5555543 3456643 224699999999999999999999732
Q ss_pred cCCCCCcccCCcccccCcccceeeecccccCCCCCCCCCCcceecccCCCCCCCCCCCC-----CCCCCC-CCeEEEEEe
Q 003901 172 FSPQEGHYFDPTKIVLDPYAKAVISRAQFGVLGPDENCWPQMACLVPTPEDEFDWEGDL-----PLKYPQ-RDLIIYEVH 245 (788)
Q Consensus 172 ~~~~~g~~~~~~~~~~DPya~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~-----~~~~~~-~~~viYei~ 245 (788)
+|. ...+.||||+++..+. ...+++.+. +.|.|.+.. ++..++ ++++|||+|
T Consensus 88 ----~g~----~~~~~DPYA~~~~~~~-------------~~~s~v~d~-~~~~w~~~~w~~~~~~~~~~~~~~~iYe~h 145 (613)
T TIGR01515 88 ----NGE----IRLKADPYAFYAEVRP-------------NTASLVYDL-EGYSWQDQKWQEKRKAKTPYEKPVSIYELH 145 (613)
T ss_pred ----CCc----EEEeCCCCEeeeccCC-------------CCcEEEECC-ccCccCchhhhhcccccCcccCCceEEEEe
Confidence 222 2357999999885332 123444432 456665433 233344 478999999
Q ss_pred ccCcccCCCCCCCCCcCHHHHHhhh-HHHHHcCCCeEEECcccccCccCcccCCCCCCCcccCCCCC--CCCCCCcHHHH
Q 003901 246 VRGFTRHESSKTEHPGTYLGVVEKL-DHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYNYSSAGI--RNCGHDAINEF 322 (788)
Q Consensus 246 v~~Ft~~~~s~~~~~G~~~gl~~~L-~yLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~wgY~~~~~--~~~~~G~~~el 322 (788)
+++|+. .|||++|+++| +|||+||||+||||||++++. .++|||++.+| ++++||+++||
T Consensus 146 v~~~~~--------~g~~~~i~~~l~dyl~~LGvt~i~L~Pi~e~~~---------~~~wGY~~~~y~~~~~~~Gt~~dl 208 (613)
T TIGR01515 146 LGSWRH--------GLSYRELADQLIPYVKELGFTHIELLPVAEHPF---------DGSWGYQVTGYYAPTSRFGTPDDF 208 (613)
T ss_pred hhhccC--------CCCHHHHHHHHHHHHHHcCCCEEEECCcccCCC---------CCCCCCCcccCcccccccCCHHHH
Confidence 999976 49999999997 999999999999999999752 23589999988 89999999999
Q ss_pred HHHHHHHHHcCCEEEEEeeeccccCCCCCCCccccCCCCCccceeeCCCCCcccCCCCccccCCCCHHHHHHHHHHHHHH
Q 003901 323 KLLVREAHKRGIEVVMDVVFNHTVEGNDKGPILSFRGVDNSVYYMLAPKGEFYNYSGCGNTFNCNHPVVRQFIVDCLRYW 402 (788)
Q Consensus 323 k~lV~~aH~~Gi~VilDvV~NH~~~~~~~~~~~~~~~~~~~~yy~~~~~g~~~~~~g~~~dln~~~p~vr~~i~d~l~~W 402 (788)
|+||++||++||+||||+|+||++.++.. ...+.+ ...|+..++.......++ .+++|+++|+||++|++++++|
T Consensus 209 k~lV~~~H~~Gi~VilD~V~NH~~~~~~~--~~~~~~--~~~y~~~~~~~~~~~~w~-~~~~~~~~~~Vr~~l~~~~~~W 283 (613)
T TIGR01515 209 MYFVDACHQAGIGVILDWVPGHFPKDDHG--LAEFDG--TPLYEHKDPRDGEHWDWG-TLIFDYGRPEVRNFLVANALYW 283 (613)
T ss_pred HHHHHHHHHCCCEEEEEecccCcCCccch--hhccCC--CcceeccCCccCcCCCCC-CceecCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999876421 112222 122333322212222222 3689999999999999999999
Q ss_pred HHhcCccEEEEecccccc-----cCCCccccccccCccccCCccccCCCCCChHHHHHHHc--CCccccceeeeeeccCC
Q 003901 403 VTEMHVDGFRFDLASIMT-----RGSSLWDSVNVYGIPIEGDLLTTGTPLRSPPLIDLISN--DPILRGVKLIAEAWDTG 475 (788)
Q Consensus 403 ~~e~gVDGFR~D~a~~l~-----~~~~~w~~~~~~g~~~~~~~~~~g~~~~~~~~~~~i~~--~~~~~~~~ligE~w~~~ 475 (788)
+++|||||||||+++.+. ++.+.|.. +.++. ........|++.+.. ....|++++|||.+...
T Consensus 284 ~~ey~iDG~R~D~v~~~~~~~~~~~~~~~~~-~~~~~---------~~~~~~~~fl~~~~~~v~~~~p~~~liaE~~~~~ 353 (613)
T TIGR01515 284 AEFYHIDGLRVDAVASMLYLDYSRDEGEWSP-NEDGG---------RENLEAVDFLRKLNQTVYEAFPGVVTIAEESTEW 353 (613)
T ss_pred HHHhCCcEEEEcCHHHhhhhccccccccccc-cccCC---------cCChHHHHHHHHHHHHHHHHCCCeEEEEEeCCCC
Confidence 999999999999986552 11122322 11110 001111235554443 12457999999976432
Q ss_pred Cccccc-ccCCCCcccccchhHHHHHHHHHhCCCCcHHHHHHHHhCCCCccCCCCCCCCcceeecccCCCc-----chhh
Q 003901 476 GLYQVG-IFPHWGIWSEWNGKYRDIVRQFIKGTDGFAGAFAECLCGSPNLYQGGGRKPWNSINFVCAHDGF-----SLAD 549 (788)
Q Consensus 476 ~~~~~~-~~~~~~~~~~~n~~f~~~lr~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~p~~~vnfv~nHD~~-----rl~d 549 (788)
...... .....++++.||+.|...++.++.... ....+..........+. . .....+++|||+. |+..
T Consensus 354 ~~~~~~~~~gg~gfd~~w~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~----~-~e~~~~~~sHD~~~~g~~~i~~ 427 (613)
T TIGR01515 354 PGVTRPTDEGGLGFHYKWNMGWMHDTLDYMSTDP-VERQYHHQLITFSMLYA----F-SENFVLPLSHDEVVHGKKSLLN 427 (613)
T ss_pred ccccccccCCcCCcCeeeCchHHHHHHHHHhhCh-hhHhhccccccHHHHHH----h-hhccccCCCCCCcccCcccHHH
Confidence 111110 112346899999999998888775432 22221100000000000 0 0112267889984 3222
Q ss_pred hhhhcccccccCCCCCCCCCCCCCCCCcCCCCcchhHHHHHHHHHHHHHHHHHHHhcCCceEEecccccccCCCCCCCCc
Q 003901 550 LVSYNQKHNLANGEDNNDGETHNNSWNCGQEGEFANILVKKLRRRQMRNFFLCLMVSQGVPMISMGDEYGHTKGGNNNTY 629 (788)
Q Consensus 550 ~~~~~~~~n~~~g~~~~dg~~~~~sw~~g~~~~~~~~~~~~~~~~~~r~a~alllt~pGiP~Iy~GdE~G~~~~g~~n~y 629 (788)
.+ .|+. ....+++|++++++||+||+||||||+|+|+.+..+
T Consensus 428 ~~---------~g~~-------------------------~~~~~~~r~~~~~~~t~pG~plif~G~E~g~~~~~~---- 469 (613)
T TIGR01515 428 KM---------PGDY-------------------------WQKFANYRALLGYMWAHPGKKLLFMGSEFAQGSEWN---- 469 (613)
T ss_pred hC---------CCch-------------------------HHHHHHHHHHHHHHHhCCCCCEEEcchhcCcCCCCC----
Confidence 11 1110 011456888999999999999999999999976432
Q ss_pred CCCCCccccccCcccC-cchHHHHHHHHHHHHHhhCccCCCCCCCCccceeeccCCCCCCCCCCCCcEEEEEEEcCC-CC
Q 003901 630 CHDNDINYFRWDKKEE-SKSDFFRFCCLLTKFRHECESLGLSDFPTADRLQWHGHAPGLPDWSDKSRFVAFTLIDSV-KG 707 (788)
Q Consensus 630 ~~~~~~~~~~W~~~~~-~~~~l~~~~r~Li~lRk~~~aL~~g~~~~~~~~~~~~~~~~~~~~~~~~~vlaf~r~~~~-~~ 707 (788)
....++|+..+. ....+++|+|+|++||+++|+|+.+++.. ..++|... -..+.++++|.|.... ++
T Consensus 470 ----~~~~l~W~~~~~~~~~~l~~~~k~L~~Lr~~~paL~~~~~~~-~~~~~~~~------~~~~~~vlaf~R~~~~~~~ 538 (613)
T TIGR01515 470 ----DTEQLDWHLLSFPMHQGVSVFVRDLNRTYQKSKALYEHDFDP-QGFEWIDV------DDDEQSVFSFIRRAKKHGE 538 (613)
T ss_pred ----CCccCCCccccCcccHHHHHHHHHHHHHHhhCHHhhccCCCC-CceEEEEc------ccCCCCEEEEEEecCCCCC
Confidence 124789986432 23789999999999999999999887654 22333211 1235689999998752 35
Q ss_pred EEEEEEeCCCCcEE---EECCCCCCCCeEEEecCCCCCCCCccCCCCchhhhhhhhcCCCCCCeeEEeeCCeEEEE
Q 003901 708 EIYVAFNASHLPVI---ISLPKRPGYRWEPLVDTSKPEPFDFLSSDLPAKEIAIKQYAPFLDANLYPMLSYSSIIL 780 (788)
Q Consensus 708 ~i~Vv~N~~~~~~~---v~Lp~~~g~~w~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~~vl 780 (788)
.++||+|+++.+.. +.+|. + +.|++++++......+..........+.-.++.....+..+.|||+|++||
T Consensus 539 ~~~vv~N~~~~~~~~Y~i~~p~-~-g~~~~il~Sd~~~~gG~g~~~~~~~~~~~~~~~g~~~~i~i~iP~~~~~~~ 612 (613)
T TIGR01515 539 ALVIICNFTPVVRHQYRVGVPQ-P-GQYREVLNSDSETYGGSGQGNKGPLSAEEGALHGRPCSLTMTLPPLATSWL 612 (613)
T ss_pred eEEEEEeCCCCCccceEeCCCC-C-CeEEEEEeCChhhcCCCCcCCCCceeccccccCCCCCEEEEEeCCcEEEEe
Confidence 79999999997654 66664 3 499999998875432221111111122222344556788899999999987
No 15
>PRK05402 glycogen branching enzyme; Provisional
Probab=100.00 E-value=1.7e-70 Score=650.76 Aligned_cols=572 Identities=20% Similarity=0.338 Sum_probs=385.1
Q ss_pred CCCCcEEeC----CcEEEEEEcCCCCEEEEEEEeCCCccCCceeeEEecccccCCCCCEEEEEEcCCCCCceeeEEEcCC
Q 003901 96 TPFGATLRD----GGVNFSIFSSNAVSATLCLITLSDLQENKVTEEIALDSFANKTGDVWHVFLKGDFKDMLYGYKFDGK 171 (788)
Q Consensus 96 ~~lGa~~~~----~~~~F~vwap~A~~V~L~l~~~~d~~~~~~~~~~~l~~~~~~~~gvW~~~i~~~~~~~~Y~y~~~g~ 171 (788)
..||||... ++|+|+||||+|++|+|+ ++|+.|.. ...+|.+. ..+|+|+++||+..++..|+|++.+.
T Consensus 118 ~~LGah~~~~~~~~gv~FrvwAP~A~~V~l~----gdfn~w~~-~~~~m~~~--~~~Gvw~~~i~~~~~g~~Y~y~v~~~ 190 (726)
T PRK05402 118 ETLGAHPVTVDGVSGVRFAVWAPNARRVSVV----GDFNGWDG-RRHPMRLR--GESGVWELFIPGLGEGELYKFEILTA 190 (726)
T ss_pred hccccEEeccCCCCcEEEEEECCCCCEEEEE----EEcCCCCC-ccccceEc--CCCCEEEEEeCCCCCCCEEEEEEeCC
Confidence 589999885 799999999999999999 56776643 24566431 25799999999999999999999742
Q ss_pred cCCCCCcccCCcccccCcccceeeecccccCCCCCCCCCCcceecccCCCCCCCCCCCCCCC------CCCCCeEEEEEe
Q 003901 172 FSPQEGHYFDPTKIVLDPYAKAVISRAQFGVLGPDENCWPQMACLVPTPEDEFDWEGDLPLK------YPQRDLIIYEVH 245 (788)
Q Consensus 172 ~~~~~g~~~~~~~~~~DPya~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~------~~~~~~viYei~ 245 (788)
.|... .+.||||+++..+. ..+++|.+ .+.|.|+++.+.. ...++++|||+|
T Consensus 191 ----~g~~~----~~~DPYa~~~~~~~-------------~~~s~v~d-~~~~~w~~~~~~~~~~~~~~~~~~~~iYe~h 248 (726)
T PRK05402 191 ----DGELL----LKADPYAFAAEVRP-------------ATASIVAD-LSQYQWNDAAWMEKRAKRNPLDAPISIYEVH 248 (726)
T ss_pred ----CCcEe----ecCCCceEEEecCC-------------CCcEEEeC-CccCCCCCcchhhcccccCcccCCcEEEEEe
Confidence 34332 36899999986442 12355544 3579998776542 245789999999
Q ss_pred ccCcccCCCCCCCCCcCHHHHHhhh-HHHHHcCCCeEEECcccccCccCcccCCCCCCCcccCCCCC--CCCCCCcHHHH
Q 003901 246 VRGFTRHESSKTEHPGTYLGVVEKL-DHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYNYSSAGI--RNCGHDAINEF 322 (788)
Q Consensus 246 v~~Ft~~~~s~~~~~G~~~gl~~~L-~yLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~wgY~~~~~--~~~~~G~~~el 322 (788)
|++|+.+. .....|||++++++| ||||+||||+||||||++++. ..+|||++.+| ++++||+++||
T Consensus 249 v~~f~~~~--~~~~~g~~~~i~~~l~~ylk~LGv~~i~L~Pi~e~~~---------~~~~GY~~~~y~ai~~~~Gt~~df 317 (726)
T PRK05402 249 LGSWRRHE--DGGRFLSYRELADQLIPYVKEMGFTHVELLPIAEHPF---------DGSWGYQPTGYYAPTSRFGTPDDF 317 (726)
T ss_pred hhhhccCC--CCCcccCHHHHHHHHHHHHHHcCCCEEEECCcccCCC---------CCCCCCCcccCCCcCcccCCHHHH
Confidence 99999851 233469999999996 999999999999999999752 23589999998 89999999999
Q ss_pred HHHHHHHHHcCCEEEEEeeeccccCCCCCCCccccCCCCCccceeeCC-CCCcccCCCCccccCCCCHHHHHHHHHHHHH
Q 003901 323 KLLVREAHKRGIEVVMDVVFNHTVEGNDKGPILSFRGVDNSVYYMLAP-KGEFYNYSGCGNTFNCNHPVVRQFIVDCLRY 401 (788)
Q Consensus 323 k~lV~~aH~~Gi~VilDvV~NH~~~~~~~~~~~~~~~~~~~~yy~~~~-~g~~~~~~g~~~dln~~~p~vr~~i~d~l~~ 401 (788)
|+||++||++||+||||+|+||++.++.. ...+.+. +.|+..++ .|.+..|.+ ..+|+.+|+||++|+++++|
T Consensus 318 k~lV~~~H~~Gi~VilD~V~NH~~~~~~~--~~~~~~~--~~y~~~~~~~~~~~~w~~--~~~n~~~~~v~~~l~~~~~~ 391 (726)
T PRK05402 318 RYFVDACHQAGIGVILDWVPAHFPKDAHG--LARFDGT--ALYEHADPREGEHPDWGT--LIFNYGRNEVRNFLVANALY 391 (726)
T ss_pred HHHHHHHHHCCCEEEEEECCCCCCCCccc--hhccCCC--cceeccCCcCCccCCCCC--ccccCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999865421 1122221 22222222 344444543 37899999999999999999
Q ss_pred HHHhcCccEEEEecccccc-cC----CCccccccccCccccCCccccCCCCCChHHHHHHHc--CCccccceeeeeeccC
Q 003901 402 WVTEMHVDGFRFDLASIMT-RG----SSLWDSVNVYGIPIEGDLLTTGTPLRSPPLIDLISN--DPILRGVKLIAEAWDT 474 (788)
Q Consensus 402 W~~e~gVDGFR~D~a~~l~-~~----~~~w~~~~~~g~~~~~~~~~~g~~~~~~~~~~~i~~--~~~~~~~~ligE~w~~ 474 (788)
|+++|||||||||++..+. .+ ...|.. +.+|... ......+++.+.. ....|++++|||.+..
T Consensus 392 W~~e~~iDG~R~D~v~~~~~~~~~~~~g~~~~-~~~~~~~---------~~~~~~fl~~~~~~~~~~~p~~~liaE~~~~ 461 (726)
T PRK05402 392 WLEEFHIDGLRVDAVASMLYLDYSRKEGEWIP-NIYGGRE---------NLEAIDFLRELNAVVHEEFPGALTIAEESTA 461 (726)
T ss_pred HHHHhCCcEEEECCHHHhhhcccccccccccc-ccccCcC---------CHHHHHHHHHHHHHHHHHCCCeEEEEECCCC
Confidence 9999999999999876542 11 122321 1111110 0011234444432 1245689999996532
Q ss_pred C-CcccccccCCCCcccccchhHHHHHHHHHhCCCCcH----HHHHHHHhCCCCccCCCCCCCCcceeecccCCCcc---
Q 003901 475 G-GLYQVGIFPHWGIWSEWNGKYRDIVRQFIKGTDGFA----GAFAECLCGSPNLYQGGGRKPWNSINFVCAHDGFS--- 546 (788)
Q Consensus 475 ~-~~~~~~~~~~~~~~~~~n~~f~~~lr~~~~g~~~~~----~~~~~~l~~~~~~~~~~~~~p~~~vnfv~nHD~~r--- 546 (788)
. ...........+++..||+.+++.+..++....... ..+...+.. .|. ...+++.|||+.+
T Consensus 462 ~~~~~~~~~~~G~gfd~~wn~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~---~~~-------e~~~l~~sHD~~~~g~ 531 (726)
T PRK05402 462 WPGVTRPTEEGGLGFGYKWNMGWMHDTLDYMERDPIYRKYHHNELTFSLLY---AYS-------ENFVLPLSHDEVVHGK 531 (726)
T ss_pred CcCccccccCCCCCCCceecCCcchHHHHHHhhCcccccccccchhHHHhH---hhh-------ccccCCCCCceeeeCc
Confidence 2 111111112345888999888776666665332110 000000000 010 1124778999853
Q ss_pred --hhhhhhhcccccccCCCCCCCCCCCCCCCCcCCCCcchhHHHHHHHHHHHHHHHHHHHhcCCceEEecccccccCCCC
Q 003901 547 --LADLVSYNQKHNLANGEDNNDGETHNNSWNCGQEGEFANILVKKLRRRQMRNFFLCLMVSQGVPMISMGDEYGHTKGG 624 (788)
Q Consensus 547 --l~d~~~~~~~~n~~~g~~~~dg~~~~~sw~~g~~~~~~~~~~~~~~~~~~r~a~alllt~pGiP~Iy~GdE~G~~~~g 624 (788)
+.+.+. |. .....+++|++++++||+||+||||||||+|+++..
T Consensus 532 ~~l~~~~~---------g~-------------------------~~~~~~~lrl~~~~~~t~pG~Plif~G~E~g~~~~~ 577 (726)
T PRK05402 532 GSLLGKMP---------GD-------------------------DWQKFANLRAYYGYMWAHPGKKLLFMGGEFGQGREW 577 (726)
T ss_pred ccHHhhCC---------CC-------------------------HHHHHHHHHHHHHHHHHCCCcCEeeCchhcCCCCCC
Confidence 222110 00 011246688899999999999999999999998643
Q ss_pred CCCCcCCCCCccccccCcccC-cchHHHHHHHHHHHHHhhCccCCCCCCCCccceeeccCCCCCCCCCCCCcEEEEEEEc
Q 003901 625 NNNTYCHDNDINYFRWDKKEE-SKSDFFRFCCLLTKFRHECESLGLSDFPTADRLQWHGHAPGLPDWSDKSRFVAFTLID 703 (788)
Q Consensus 625 ~~n~y~~~~~~~~~~W~~~~~-~~~~l~~~~r~Li~lRk~~~aL~~g~~~~~~~~~~~~~~~~~~~~~~~~~vlaf~r~~ 703 (788)
+ ..++|+|+..+. ...++++|+|+|++||+++|+|+.+++.. ..+.|... ...+.+|++|.|..
T Consensus 578 ~--------~~~~l~W~~~~~~~~~~l~~~~k~Li~Lr~~~~aL~~g~~~~-~~~~~~~~------~~~~~~vlaf~R~~ 642 (726)
T PRK05402 578 N--------HDASLDWHLLDFPWHRGVQRLVRDLNHLYRAEPALHELDFDP-EGFEWIDA------DDAENSVLSFLRRG 642 (726)
T ss_pred C--------ccCcCCccccCCcchHHHHHHHHHHHHHHHhChhhhccccCc-CCeeEEec------ccCCCCEEEEEEec
Confidence 2 246899987542 23789999999999999999999887654 22333211 12356899999986
Q ss_pred CC-CCEEEEEEeCCCCcE---EEECCCCCCCCeEEEecCCCCCCCCccCCCCchhhhhhhhcCCCCCCeeEEeeCCeEEE
Q 003901 704 SV-KGEIYVAFNASHLPV---IISLPKRPGYRWEPLVDTSKPEPFDFLSSDLPAKEIAIKQYAPFLDANLYPMLSYSSII 779 (788)
Q Consensus 704 ~~-~~~i~Vv~N~~~~~~---~v~Lp~~~g~~w~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~~v 779 (788)
.+ ++.++||+|+++.++ .+.+|. ++.|++++++......+..........+...++.....+..+.|||+|++|
T Consensus 643 ~~~~~~vlvv~N~~~~~~~~y~i~~p~--~g~~~~ilnsd~~~~gg~~~~~~~~~~~~~~~~~g~~~~~~i~lp~~~~~v 720 (726)
T PRK05402 643 KDDGEPLLVVCNFTPVPRHDYRLGVPQ--AGRWREVLNTDAEHYGGSNVGNGGGVHAEEVPWHGRPHSLSLTLPPLATLI 720 (726)
T ss_pred CCCCCeEEEEEeCCCCcccceEECCCC--CCeEEEEEcCcchhhCCCCCCCCCceeccccccCCCCCEEEEEeCCCEEEE
Confidence 53 478999999998653 555654 359999999987653332111111111111234455567899999999999
Q ss_pred EEecC
Q 003901 780 LLLSP 784 (788)
Q Consensus 780 l~~~~ 784 (788)
|....
T Consensus 721 ~~~~~ 725 (726)
T PRK05402 721 LKPEA 725 (726)
T ss_pred EEEcC
Confidence 98753
No 16
>PRK14705 glycogen branching enzyme; Provisional
Probab=100.00 E-value=2.3e-69 Score=649.52 Aligned_cols=567 Identities=20% Similarity=0.293 Sum_probs=394.2
Q ss_pred CCCcEEe--------CCcEEEEEEcCCCCEEEEEEEeCCCccCCceeeEEecccccCCCCCEEEEEEcCCCCCceeeEEE
Q 003901 97 PFGATLR--------DGGVNFSIFSSNAVSATLCLITLSDLQENKVTEEIALDSFANKTGDVWHVFLKGDFKDMLYGYKF 168 (788)
Q Consensus 97 ~lGa~~~--------~~~~~F~vwap~A~~V~L~l~~~~d~~~~~~~~~~~l~~~~~~~~gvW~~~i~~~~~~~~Y~y~~ 168 (788)
.||||.. .+||+|+||||+|++|+|+ +|||.|... ..+|.+ ...+|+|+++||+..+|..|+|+|
T Consensus 622 ~lGah~~~~~~~~~~~~Gv~F~VWAP~A~~V~vv----gdFN~w~~~-~~~m~~--~~~~GvW~~fipg~~~G~~Yky~i 694 (1224)
T PRK14705 622 VLGAHVQHYKSSLGDVDGVSFAVWAPNAQAVRVK----GDFNGWDGR-EHSMRS--LGSSGVWELFIPGVVAGACYKFEI 694 (1224)
T ss_pred hcCCeEeeccCccCCCCeEEEEEECCCCCEEEEE----EEecCCCCC-cccceE--CCCCCEEEEEECCCCCCCEEEEEE
Confidence 5999974 2489999999999999999 577777543 456753 245799999999999999999999
Q ss_pred cCCcCCCCCcccCCcccccCcccceeeecccccCCCCCCCCCCcceecccCCCCCCCCCCCCCC-----CCC-CCCeEEE
Q 003901 169 DGKFSPQEGHYFDPTKIVLDPYAKAVISRAQFGVLGPDENCWPQMACLVPTPEDEFDWEGDLPL-----KYP-QRDLIIY 242 (788)
Q Consensus 169 ~g~~~~~~g~~~~~~~~~~DPya~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~-----~~~-~~~~viY 242 (788)
.+. .|... .+.||||+.+..+ |..+|+|.+. .|.|+++.+. ..+ .++++||
T Consensus 695 ~~~----~g~~~----~k~DPyA~~~e~~-------------p~~aS~V~d~--~~~w~d~~W~~~r~~~~~~~~p~~IY 751 (1224)
T PRK14705 695 LTK----AGQWV----EKADPLAFGTEVP-------------PLTASRVVEA--SYAFKDAEWMSARAERDPHNSPMSVY 751 (1224)
T ss_pred EcC----CCcEE----ecCCccccccccC-------------CCCCeEEeCC--CCCcCChhhhhccccCCCCcCCcEEE
Confidence 854 34432 3589999987432 1234566553 4888876443 222 4789999
Q ss_pred EEeccCcccCCCCCCCCCcCHHHHHhh-hHHHHHcCCCeEEECcccccCccCcccCCCCCCCcccCCCCC--CCCCCCcH
Q 003901 243 EVHVRGFTRHESSKTEHPGTYLGVVEK-LDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYNYSSAGI--RNCGHDAI 319 (788)
Q Consensus 243 ei~v~~Ft~~~~s~~~~~G~~~gl~~~-L~yLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~wgY~~~~~--~~~~~G~~ 319 (788)
|+|+++|+. .|+|++++++ |||||+||||+||||||++++. .++|||++.+| ++++||++
T Consensus 752 EvHvgsf~~--------~~~~~~l~~~lldYlk~LGvt~IeLmPv~e~p~---------~~swGY~~~~y~ap~~ryGt~ 814 (1224)
T PRK14705 752 EVHLGSWRL--------GLGYRELAKELVDYVKWLGFTHVEFMPVAEHPF---------GGSWGYQVTSYFAPTSRFGHP 814 (1224)
T ss_pred EEEeccccc--------CCchHHHHHHHHHHHHHhCCCEEEECccccCCC---------CCCCCCCccccCCcCcccCCH
Confidence 999999987 4889999988 5999999999999999999752 34699999998 89999999
Q ss_pred HHHHHHHHHHHHcCCEEEEEeeeccccCCCCCCCccccCCCCCcccee-eCCC-CCcccCCCCccccCCCCHHHHHHHHH
Q 003901 320 NEFKLLVREAHKRGIEVVMDVVFNHTVEGNDKGPILSFRGVDNSVYYM-LAPK-GEFYNYSGCGNTFNCNHPVVRQFIVD 397 (788)
Q Consensus 320 ~elk~lV~~aH~~Gi~VilDvV~NH~~~~~~~~~~~~~~~~~~~~yy~-~~~~-g~~~~~~g~~~dln~~~p~vr~~i~d 397 (788)
+|||+||++||++||+||||+|+||++.+. + .+..+++..+|. .++. |.+..| |. ..+|+.+++||++|++
T Consensus 815 ~dfk~lVd~~H~~GI~VILD~V~nH~~~d~-~----~l~~fdg~~~y~~~d~~~g~~~~W-g~-~~fn~~~~eVr~fli~ 887 (1224)
T PRK14705 815 DEFRFLVDSLHQAGIGVLLDWVPAHFPKDS-W----ALAQFDGQPLYEHADPALGEHPDW-GT-LIFDFGRTEVRNFLVA 887 (1224)
T ss_pred HHHHHHHHHHHHCCCEEEEEeccccCCcch-h----hhhhcCCCcccccCCcccCCCCCC-CC-ceecCCCHHHHHHHHH
Confidence 999999999999999999999999997653 2 122233333333 3332 443333 22 4699999999999999
Q ss_pred HHHHHHHhcCccEEEEecccccc-----cCCCccccccccCccccCCccccCCCCCChHHHHHHHc--CCccccceeeee
Q 003901 398 CLRYWVTEMHVDGFRFDLASIMT-----RGSSLWDSVNVYGIPIEGDLLTTGTPLRSPPLIDLISN--DPILRGVKLIAE 470 (788)
Q Consensus 398 ~l~~W~~e~gVDGFR~D~a~~l~-----~~~~~w~~~~~~g~~~~~~~~~~g~~~~~~~~~~~i~~--~~~~~~~~ligE 470 (788)
+++||+++|||||||||++..|- ++.+.|.+ +.||+..+.+. ..|++.+.. ....|++++|||
T Consensus 888 ~a~~Wl~eyhiDGfR~Dav~~mly~Dysr~~g~w~p-n~~gg~en~~a---------i~fl~~ln~~v~~~~p~~~~IAE 957 (1224)
T PRK14705 888 NALYWLDEFHIDGLRVDAVASMLYLDYSREEGQWRP-NRFGGRENLEA---------ISFLQEVNATVYKTHPGAVMIAE 957 (1224)
T ss_pred HHHHHHHHhCCCcEEEeehhhhhhcccccccccccc-cccCCccChHH---------HHHHHHHHHHHHHHCCCeEEEEE
Confidence 99999999999999999986652 23355654 66665433222 235555443 123569999999
Q ss_pred eccCC-CcccccccCCCCcccccchhHHHHHHHHHhCCCCcH----HHHHHHHhCCCCccCCCCCCCCcceeecccCCCc
Q 003901 471 AWDTG-GLYQVGIFPHWGIWSEWNGKYRDIVRQFIKGTDGFA----GAFAECLCGSPNLYQGGGRKPWNSINFVCAHDGF 545 (788)
Q Consensus 471 ~w~~~-~~~~~~~~~~~~~~~~~n~~f~~~lr~~~~g~~~~~----~~~~~~l~~~~~~~~~~~~~p~~~vnfv~nHD~~ 545 (788)
.+... +..........||+..||+.+++.+..++..+..+. ..+...+.-. |. ..+.+..+||+.
T Consensus 958 est~~p~vt~p~~~GGlGFd~kWnmgwmhd~l~Y~~~dp~~r~~~~~~ltf~~~ya---~~-------e~fvl~~SHDev 1027 (1224)
T PRK14705 958 ESTAFPGVTAPTSHGGLGFGLKWNMGWMHDSLKYASEDPINRKWHHGTITFSLVYA---FT-------ENFLLPISHDEV 1027 (1224)
T ss_pred cCCCCcCccccccCCCccCCcEecchhhHHHHHHhhhCcchhhcccchHHHHHHHH---hh-------cCEecccccccc
Confidence 87543 222222233467999999999987777776543211 1111111100 10 112244578864
Q ss_pred chh--hhhhhcccccccCCCCCCCCCCCCCCCCcCCCCcchhHHHHHHHHHHHHHHHHHHHhcCCceEEecccccccCCC
Q 003901 546 SLA--DLVSYNQKHNLANGEDNNDGETHNNSWNCGQEGEFANILVKKLRRRQMRNFFLCLMVSQGVPMISMGDEYGHTKG 623 (788)
Q Consensus 546 rl~--d~~~~~~~~n~~~g~~~~dg~~~~~sw~~g~~~~~~~~~~~~~~~~~~r~a~alllt~pGiP~Iy~GdE~G~~~~ 623 (788)
.-. +++ +...|+ .| .+...+|++++++|++||+|+||||+|||+...
T Consensus 1028 vhgk~sl~------~km~Gd----------~~---------------~k~a~lR~~~a~~~~~PGk~LlFMG~Efgq~~e 1076 (1224)
T PRK14705 1028 VHGKGSML------RKMPGD----------RW---------------QQLANLRAFLAYQWAHPGKQLIFMGTEFGQEAE 1076 (1224)
T ss_pred cccchhHH------HhCCCc----------HH---------------HHHHHHHHHHHHHHhcCCcCEEECccccCCCCC
Confidence 210 000 000110 11 124567889999999999999999999999865
Q ss_pred CCCCCcCCCCCccccccCcccC-cchHHHHHHHHHHHHHhhCccCCCCCCCCccceeeccCCCCCCCCCCCCcEEEEEEE
Q 003901 624 GNNNTYCHDNDINYFRWDKKEE-SKSDFFRFCCLLTKFRHECESLGLSDFPTADRLQWHGHAPGLPDWSDKSRFVAFTLI 702 (788)
Q Consensus 624 g~~n~y~~~~~~~~~~W~~~~~-~~~~l~~~~r~Li~lRk~~~aL~~g~~~~~~~~~~~~~~~~~~~~~~~~~vlaf~r~ 702 (788)
.+. ...++|...+. .+..+..|+|.|++||+++|+|...++.. ..++|... -+.+.+|++|.|.
T Consensus 1077 w~~--------~~~LdW~ll~~~~h~~~~~~~rdLn~ly~~~paL~~~d~~~-~gf~wi~~------~d~~~~vlaf~R~ 1141 (1224)
T PRK14705 1077 WSE--------QHGLDWFLADIPAHRGIQLLTKDLNELYTSTPALYQRDNEP-GGFQWING------GDADRNVLSFIRW 1141 (1224)
T ss_pred ccc--------cccCCCcccCChhhHHHHHHHHHHHHHHhcChhhhccCCCC-CceEEeec------CCCCCcEEEEEEe
Confidence 432 24589998663 34789999999999999999999887654 45555321 1345789999999
Q ss_pred cCCCCEEEEEEeCCCCcEE-EECCCCCCCCeEEEecCCCCCCCCccCCCCchhhhhhhhcCCCCCCeeEEeeCCeEEEEE
Q 003901 703 DSVKGEIYVAFNASHLPVI-ISLPKRPGYRWEPLVDTSKPEPFDFLSSDLPAKEIAIKQYAPFLDANLYPMLSYSSIILL 781 (788)
Q Consensus 703 ~~~~~~i~Vv~N~~~~~~~-v~Lp~~~g~~w~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~~vl~ 781 (788)
.+.++.++||+|+++.++. +.+..+..+.|+++++|......+...............+.....+..++|||++++||.
T Consensus 1142 ~~~~~~vlvv~Nftp~~~~~y~igvp~~G~y~eilnsd~~~ygGsg~~n~~~~~~~~~~~~g~~~s~~i~lPpl~~~~~~ 1221 (1224)
T PRK14705 1142 DGDGNPLVCAINFSGGPHKGYTLGVPAAGAWTEVLNTDHETYGGSGVLNPGSLKATTEGQDGQPATLTVTLPPLGASFFA 1221 (1224)
T ss_pred CCCCCEEEEEEcCCCCCccCceECCCCCCeEEEEEeCchhhcCCCCcCCCCceeecccccCCCCceEEEEecCCEEEEEE
Confidence 7655679999999997765 444333335999999998875433322221222222234566677899999999999987
Q ss_pred ec
Q 003901 782 LS 783 (788)
Q Consensus 782 ~~ 783 (788)
..
T Consensus 1222 ~~ 1223 (1224)
T PRK14705 1222 PA 1223 (1224)
T ss_pred EC
Confidence 64
No 17
>PLN02447 1,4-alpha-glucan-branching enzyme
Probab=100.00 E-value=2.4e-66 Score=598.01 Aligned_cols=601 Identities=19% Similarity=0.251 Sum_probs=400.9
Q ss_pred ceecCCCCCCCCcEEeCCcEEEEEEcCCCCEEEEEEEeCCCccCCceeeEEecccccCCCCCEEEEEEcC------CCCC
Q 003901 88 FQVSKGYPTPFGATLRDGGVNFSIFSSNAVSATLCLITLSDLQENKVTEEIALDSFANKTGDVWHVFLKG------DFKD 161 (788)
Q Consensus 88 ~~~~~g~~~~lGa~~~~~~~~F~vwap~A~~V~L~l~~~~d~~~~~~~~~~~l~~~~~~~~gvW~~~i~~------~~~~ 161 (788)
..+..|+ ..|||++.+++|+|+||||+|++|+|+ +|||+|.. ...+|.+ ...|+|+++||+ ..+|
T Consensus 98 ~~f~~~y-~~lGa~~~~~g~~FrvWAP~A~~V~Lv----GdFN~W~~-~~~~M~~---~~~GvWe~~ip~~~g~~~~~~G 168 (758)
T PLN02447 98 EAFSRGY-EKFGFNRSEGGITYREWAPGAKAAALI----GDFNNWNP-NAHWMTK---NEFGVWEIFLPDADGSPAIPHG 168 (758)
T ss_pred HHHHHHH-HhceeEEecCCEEEEEECCCCCEEEEE----EecCCCCC-CccCcee---CCCCEEEEEECCccccccCCCC
Confidence 3334455 579999999999999999999999999 78888864 3457753 457999999998 7889
Q ss_pred ceeeEEEcCCcCCCCCcccCCcccccCcccceeeecccccCCCCCCCCCCcceecccCCC--CCCCCCCCCCCCCCCCCe
Q 003901 162 MLYGYKFDGKFSPQEGHYFDPTKIVLDPYAKAVISRAQFGVLGPDENCWPQMACLVPTPE--DEFDWEGDLPLKYPQRDL 239 (788)
Q Consensus 162 ~~Y~y~~~g~~~~~~g~~~~~~~~~~DPya~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~W~~~~~~~~~~~~~ 239 (788)
..|+|+|.+. +|.. ...+||||+.+..+..- .....++++.++. +.|.|+++.+. ..+++
T Consensus 169 ~~Yky~i~~~----~g~~----~~r~dpya~~~~~~p~~--------~~~~~~svv~dp~~~~~y~w~~~~~~--~~~~~ 230 (758)
T PLN02447 169 SRVKIRMETP----DGRW----VDRIPAWIKYAVQAPGE--------IGAPYNGVYWDPPEEEKYVFKHPRPP--RPAAL 230 (758)
T ss_pred CEEEEEEEeC----CCcE----EeecCchHheeeccCCc--------cCCCCceEEeCCCCCCCCCCCCCCCC--CCCCC
Confidence 9999999743 3332 23589999987543210 0011345665532 35999976543 34679
Q ss_pred EEEEEeccCcccCCCCCCCCCcCHHHHHh-hhHHHHHcCCCeEEECcccccCccCcccCCCCCCCcccCCCCC--CCCCC
Q 003901 240 IIYEVHVRGFTRHESSKTEHPGTYLGVVE-KLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYNYSSAGI--RNCGH 316 (788)
Q Consensus 240 viYei~v~~Ft~~~~s~~~~~G~~~gl~~-~L~yLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~wgY~~~~~--~~~~~ 316 (788)
+|||+||+.|+. ....|+|+++++ +|+|||+||||+||||||++++. +.+|||++.+| ++++|
T Consensus 231 ~IYE~Hvg~~~~-----~~~~gty~~~~~~~L~ylk~LG~t~I~LmPi~e~~~---------~~~wGY~~~~~fa~~~~~ 296 (758)
T PLN02447 231 RIYEAHVGMSSE-----EPKVNSYREFADDVLPRIKALGYNAVQLMAIQEHAY---------YGSFGYHVTNFFAVSSRS 296 (758)
T ss_pred EEEEEeCCcccC-----CCCCCCHHHHHHHHHHHHHHcCCCEEEECCccccCC---------CCCCCcCcccCccccccc
Confidence 999999998854 224699999865 58999999999999999999752 34589999988 88999
Q ss_pred CcHHHHHHHHHHHHHcCCEEEEEeeeccccCCCCCCCccccCCCCCccceeeCCCCCcccCCCCccccCCCCHHHHHHHH
Q 003901 317 DAINEFKLLVREAHKRGIEVVMDVVFNHTVEGNDKGPILSFRGVDNSVYYMLAPKGEFYNYSGCGNTFNCNHPVVRQFIV 396 (788)
Q Consensus 317 G~~~elk~lV~~aH~~Gi~VilDvV~NH~~~~~~~~~~~~~~~~~~~~yy~~~~~g~~~~~~g~~~dln~~~p~vr~~i~ 396 (788)
|+++|||+||++||++||+||||||+||++.++..+ ...|.+.. ..||..++.|... .++. ..+|+.+++||++|+
T Consensus 297 Gtp~dlk~LVd~aH~~GI~VilDvV~nH~~~~~~~g-l~~fDg~~-~~Yf~~~~~g~~~-~w~~-~~~N~~~~eVr~fLl 372 (758)
T PLN02447 297 GTPEDLKYLIDKAHSLGLRVLMDVVHSHASKNTLDG-LNGFDGTD-GSYFHSGPRGYHW-LWDS-RLFNYGNWEVLRFLL 372 (758)
T ss_pred CCHHHHHHHHHHHHHCCCEEEEEecccccccccccc-ccccCCCC-ccccccCCCCCcC-cCCC-ceecCCCHHHHHHHH
Confidence 999999999999999999999999999999764322 22344433 3466555544322 2232 369999999999999
Q ss_pred HHHHHHHHhcCccEEEEeccccccc-----CCCcccccc-ccCccccCCccccCCCCCChHHHHHHHc--CCccccceee
Q 003901 397 DCLRYWVTEMHVDGFRFDLASIMTR-----GSSLWDSVN-VYGIPIEGDLLTTGTPLRSPPLIDLISN--DPILRGVKLI 468 (788)
Q Consensus 397 d~l~~W~~e~gVDGFR~D~a~~l~~-----~~~~w~~~~-~~g~~~~~~~~~~g~~~~~~~~~~~i~~--~~~~~~~~li 468 (788)
++++||++||||||||||+++.|-. ..+|+...+ .||...+.++ ..++..+.. ....|++++|
T Consensus 373 ~~~~~Wl~ey~IDGfRfDaV~smlY~~hg~~~~f~~~~~~~~g~~~d~~a---------~~fL~~~N~~i~~~~p~~~~I 443 (758)
T PLN02447 373 SNLRWWLEEYKFDGFRFDGVTSMLYHHHGLQMAFTGNYNEYFGMATDVDA---------VVYLMLANDLLHGLYPEAVTI 443 (758)
T ss_pred HHHHHHHHHhCcccccccchhhhhccccCcccccccCcccccCCccChHH---------HHHHHHHHHHHHHhCCCeEEE
Confidence 9999999999999999999987631 113332222 2333222222 124443332 2246799999
Q ss_pred eeeccCC-CcccccccCCCCcccccchhHHHHHHHHHhCCCC---cHHHHHHHHhCCCCccCCCCCCCCcceeecccCCC
Q 003901 469 AEAWDTG-GLYQVGIFPHWGIWSEWNGKYRDIVRQFIKGTDG---FAGAFAECLCGSPNLYQGGGRKPWNSINFVCAHDG 544 (788)
Q Consensus 469 gE~w~~~-~~~~~~~~~~~~~~~~~n~~f~~~lr~~~~g~~~---~~~~~~~~l~~~~~~~~~~~~~p~~~vnfv~nHD~ 544 (788)
||.+... .+...-.-.+.||++.||+.+.+....+++.... ....+...|... +...+.|.|.+|||+
T Consensus 444 AEd~s~~p~l~~p~~~GGlGFDykw~Mg~~~~~l~~l~~~~d~~~~~~~l~~sl~~r--------~~~E~~I~y~eSHDe 515 (758)
T PLN02447 444 AEDVSGMPTLCRPVQEGGVGFDYRLAMAIPDKWIELLKEKRDEDWSMGDIVHTLTNR--------RYTEKCVAYAESHDQ 515 (758)
T ss_pred EEcCCCCCCccccCCCCcCCcceEECCccchHHHHHHhhCCCcccCHHHHHHHHhcc--------cccCceEeccCCcCe
Confidence 9986532 2222222234679999999999999999887532 233444444321 233588999999998
Q ss_pred cchhhhhhhcccccccCCCCCCCCCCCCCCCCcCCCCcchhHHHHHHHHHHHHHHHHHHHhcCCc-eEEecccccccCC-
Q 003901 545 FSLADLVSYNQKHNLANGEDNNDGETHNNSWNCGQEGEFANILVKKLRRRQMRNFFLCLMVSQGV-PMISMGDEYGHTK- 622 (788)
Q Consensus 545 ~rl~d~~~~~~~~n~~~g~~~~dg~~~~~sw~~g~~~~~~~~~~~~~~~~~~r~a~alllt~pGi-P~Iy~GdE~G~~~- 622 (788)
....+.- ++..- .|+.-. ....+. ...+..+.+ .....|++.+++|++||. +++|||+|||+..
T Consensus 516 vv~Gkks-------l~~~l--~d~~my--~~m~~~--~~~~~~~~R-~~~lhkmirl~~~~~pG~g~L~FMGnEFg~~ew 581 (758)
T PLN02447 516 ALVGDKT-------IAFWL--MDKEMY--DGMSTL--TPATPVVDR-GIALHKMIRLITMALGGEGYLNFMGNEFGHPEW 581 (758)
T ss_pred eecCcch-------hHhhh--cchhhh--hcCCCC--hhhhhhHHH-HHHHHHHHHHHHHhCCCCcceeecccccCCchh
Confidence 6442211 00000 000000 000010 001111111 122345566789999999 7999999999963
Q ss_pred -----CCCCCCcCCCCCccccccCcccCc---chHHHHHHHHHHHHHhhCccCCCCCCCCccceeeccCCCCCCCCCCCC
Q 003901 623 -----GGNNNTYCHDNDINYFRWDKKEES---KSDFFRFCCLLTKFRHECESLGLSDFPTADRLQWHGHAPGLPDWSDKS 694 (788)
Q Consensus 623 -----~g~~n~y~~~~~~~~~~W~~~~~~---~~~l~~~~r~Li~lRk~~~aL~~g~~~~~~~~~~~~~~~~~~~~~~~~ 694 (788)
.|++.+|. ...++|+..+.. .+.|.+|+|.|++|++++|+|..+. .. + ..-++++
T Consensus 582 ~Dfpr~~n~ws~~----~~~~~W~L~d~~~l~~~~l~~f~~~L~~l~~~~~~L~~~~-~~---i---------~~~d~~~ 644 (758)
T PLN02447 582 IDFPREGNGWSYD----KCRRRWDLADADHLRYKFLNAFDRAMMHLDEKYGFLTSEH-QY---V---------SRKDEGD 644 (758)
T ss_pred ccCcccccccCcc----cccCCccccCCCchhhhHHHHHHHHHHHHHhcCccccCCC-ce---e---------eeecCCC
Confidence 34444442 235789986532 3789999999999999999997542 11 1 1124567
Q ss_pred cEEEEEEEcCCCCEEEEEEeCCCC-cE-EEECCCCCCCCeEEEecCCCCCCCCccCCCC-chhhhhhhhcCCCCCCeeEE
Q 003901 695 RFVAFTLIDSVKGEIYVAFNASHL-PV-IISLPKRPGYRWEPLVDTSKPEPFDFLSSDL-PAKEIAIKQYAPFLDANLYP 771 (788)
Q Consensus 695 ~vlaf~r~~~~~~~i~Vv~N~~~~-~~-~v~Lp~~~g~~w~~l~d~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 771 (788)
+|++|.|. .++||+|++.. +. .+.|..+..+.|+++++|......+....+. ....+....+..+..+..+.
T Consensus 645 ~Viaf~R~-----~ll~V~NF~p~~s~~~Y~igvp~~G~y~~ilnSD~~~fGG~~~~~~~~~~~~~~~~~~~~~~s~~v~ 719 (758)
T PLN02447 645 KVIVFERG-----DLVFVFNFHPTNSYSDYRVGCDKPGKYKIVLDSDAWEFGGFGRVDHDADHFTPEGNFDNRPHSFMVY 719 (758)
T ss_pred CEEEEEeC-----CeEEEEeCCCCCCCCCcEECCCCCCeEEEEECCCchhcCCCCccCCCccEEecccCcCCCCcEEEEE
Confidence 99999994 38999999973 32 3444433335999999998765433321110 11111223456667788999
Q ss_pred eeCCeEEEEEecCCC
Q 003901 772 MLSYSSIILLLSPDE 786 (788)
Q Consensus 772 v~~~s~~vl~~~~~~ 786 (788)
|||++++||.+..+.
T Consensus 720 iP~~~~~vl~~~~~~ 734 (758)
T PLN02447 720 APSRTAVVYAPVDED 734 (758)
T ss_pred eCCceEEEEEECCcc
Confidence 999999999988764
No 18
>PRK10785 maltodextrin glucosidase; Provisional
Probab=100.00 E-value=2.8e-63 Score=577.27 Aligned_cols=484 Identities=17% Similarity=0.219 Sum_probs=336.6
Q ss_pred EeCCcEEEEEEcCC---CCEEEEEEEeCCCccCCceeeEEecccccCC-CCCEEEEEEcCC--CCCceeeEEEcCCcCCC
Q 003901 102 LRDGGVNFSIFSSN---AVSATLCLITLSDLQENKVTEEIALDSFANK-TGDVWHVFLKGD--FKDMLYGYKFDGKFSPQ 175 (788)
Q Consensus 102 ~~~~~~~F~vwap~---A~~V~L~l~~~~d~~~~~~~~~~~l~~~~~~-~~gvW~~~i~~~--~~~~~Y~y~~~g~~~~~ 175 (788)
..++.+.++|+.+. ..+|.|.+...++ ...++|.+.... ...+|+++|+-. ..-..|.|++...
T Consensus 16 ~~~~~~~~~lr~~~~~~~~~v~l~~~~~~~------~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~Y~F~l~~~---- 85 (598)
T PRK10785 16 QSKDQLLITLWLTGEDPPQRVMLRCEPDNE------EYLLPMEKQRSQPQVTAWRASLPLNSGQPRRRYSFKLLWH---- 85 (598)
T ss_pred cCCCEEEEEEEEcCCCceEEEEEEEEcCCC------EEEEEeEEeecCCCceEEEEEEEcCCCCceEEEEEEEEeC----
Confidence 46788999999874 4577776533221 235677653222 235799998753 3345677777421
Q ss_pred CCcccCCcccccCcccceeeecccccCCCCCCCCCCcceecccCCCCCCCCCCCCCCCCCCCCeEEEEEeccCcccCCCC
Q 003901 176 EGHYFDPTKIVLDPYAKAVISRAQFGVLGPDENCWPQMACLVPTPEDEFDWEGDLPLKYPQRDLIIYEVHVRGFTRHESS 255 (788)
Q Consensus 176 ~g~~~~~~~~~~DPya~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~viYei~v~~Ft~~~~s 255 (788)
.+.++ .+- ..+. .. .+.....|.+......+.+.+++|||||+|++|.+++.+
T Consensus 86 ~~~~~------~~~--~g~~------~~-------------~~~~~~~f~~~~~~~~P~W~~~~v~YqIfpDRF~ng~~~ 138 (598)
T PRK10785 86 DRQRW------FTP--QGFS------RR-------------PPARLEQFAVDVPDQGPQWVADQVFYQIFPDRFARSLPR 138 (598)
T ss_pred CEEEE------EcC--Ccee------ec-------------cCCCccceEeeCCCCCCchhhcCEEEEechhhhcCCCcc
Confidence 11111 000 0000 00 000001122211111222348999999999999987764
Q ss_pred CC--------------------------------CCCcCHHHHHhhhHHHHHcCCCeEEECcccccCccCcccCCCCCCC
Q 003901 256 KT--------------------------------EHPGTYLGVVEKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGD 303 (788)
Q Consensus 256 ~~--------------------------------~~~G~~~gl~~~L~yLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~ 303 (788)
++ .++|||+||+++|||||+||||+|||+||++++ .+
T Consensus 139 n~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~f~GGDl~GI~~kLdYL~~LGv~~I~L~Pif~s~-----------s~ 207 (598)
T PRK10785 139 EAVQDHVYYHHAAGQEIILRDWDEPVTAQAGGSTFYGGDLDGISEKLPYLKKLGVTALYLNPIFTAP-----------SV 207 (598)
T ss_pred cCccCCceeeccCCCcccccCcCCCcccccccccccCcCHHHHHHHHHHHHHcCCCEEEeCCcccCC-----------CC
Confidence 32 248999999999999999999999999999853 23
Q ss_pred cccCCCCC--CCCCCCcHHHHHHHHHHHHHcCCEEEEEeeeccccCCCCCCCccc------cCC--CCCccceeeCCCCC
Q 003901 304 YNYSSAGI--RNCGHDAINEFKLLVREAHKRGIEVVMDVVFNHTVEGNDKGPILS------FRG--VDNSVYYMLAPKGE 373 (788)
Q Consensus 304 wgY~~~~~--~~~~~G~~~elk~lV~~aH~~Gi~VilDvV~NH~~~~~~~~~~~~------~~~--~~~~~yy~~~~~g~ 373 (788)
|+|++.+| ++|+||+.+|||+||++||++||+||||+|+||++..|.|+.... +.+ ....+||.+.++|.
T Consensus 208 hgYd~~Dy~~iDp~~Gt~~df~~Lv~~aH~rGikVilD~V~NH~~~~~~~f~~~~~~~~ga~~~~~spy~dwf~~~~~~~ 287 (598)
T PRK10785 208 HKYDTEDYRHVDPQLGGDAALLRLRHATQQRGMRLVLDGVFNHTGDSHPWFDRHNRGTGGACHHPDSPWRDWYSFSDDGR 287 (598)
T ss_pred CCcCcccccccCcccCCHHHHHHHHHHHHHCCCEEEEEECCCcCCCCCHHHHHhhccccccccCCCCCcceeeEECCCCC
Confidence 79999998 999999999999999999999999999999999999876542211 111 12245788877777
Q ss_pred cccCCCC--ccccCCCCHHHHHHHHH----HHHHHHHh-cCccEEEEecccccccC------CCccccccccCccccCCc
Q 003901 374 FYNYSGC--GNTFNCNHPVVRQFIVD----CLRYWVTE-MHVDGFRFDLASIMTRG------SSLWDSVNVYGIPIEGDL 440 (788)
Q Consensus 374 ~~~~~g~--~~dln~~~p~vr~~i~d----~l~~W~~e-~gVDGFR~D~a~~l~~~------~~~w~~~~~~g~~~~~~~ 440 (788)
+..|.++ .++||++||+||++|++ ++++|+++ |||||||+|+|+++.+. .+||++
T Consensus 288 ~~~w~g~~~lPdLN~~np~v~~~l~~~~~~v~~~Wl~~~~giDG~RlDva~~v~~~~~~~~~~~f~~~------------ 355 (598)
T PRK10785 288 ALDWLGYASLPKLDFQSEEVVNEIYRGEDSIVRHWLKAPYNIDGWRLDVVHMLGEGGGARNNLQHVAG------------ 355 (598)
T ss_pred cCCcCCCCcCccccCCCHHHHHHHHhhhhHHHHHhhcCCCCCcEEEEecHhHhccccCccccHHHHHH------------
Confidence 7777665 47999999999999995 89999986 99999999999988642 234443
Q ss_pred cccCCCCCChHHHHHHHcCCccccceeeeeeccCCCcccccccCCCCcccccch-hHHHHHHHHHhCCC-------CcHH
Q 003901 441 LTTGTPLRSPPLIDLISNDPILRGVKLIAEAWDTGGLYQVGIFPHWGIWSEWNG-KYRDIVRQFIKGTD-------GFAG 512 (788)
Q Consensus 441 ~~~g~~~~~~~~~~~i~~~~~~~~~~ligE~w~~~~~~~~~~~~~~~~~~~~n~-~f~~~lr~~~~g~~-------~~~~ 512 (788)
+.+.++. ..|++++|||.|.....+..+ -++++.+|+ .|...++.++.+.. ....
T Consensus 356 -----------~~~~vk~--~~pd~~ligE~~~~~~~~l~~----~~~d~~mny~~f~~~~~~~~~~~~~~~~~~~~~~~ 418 (598)
T PRK10785 356 -----------ITQAAKE--ENPEAYVLGEHFGDARQWLQA----DVEDAAMNYRGFAFPLRAFLANTDIAYHPQQIDAQ 418 (598)
T ss_pred -----------HHHHHHh--hCCCeEEEEeccCChhhhccC----ccccccccchhhhhHHHHHhhccccccCccCCCHH
Confidence 3333332 456899999999754222211 124567775 58888888886532 1234
Q ss_pred HHHHHHhCCCCccCCCCCCCCcceeecccCCCcchhhhhhhcccccccCCCCCCCCCCCCCCCCcCCCCcchhHHHHHHH
Q 003901 513 AFAECLCGSPNLYQGGGRKPWNSINFVCAHDGFSLADLVSYNQKHNLANGEDNNDGETHNNSWNCGQEGEFANILVKKLR 592 (788)
Q Consensus 513 ~~~~~l~~~~~~~~~~~~~p~~~vnfv~nHD~~rl~d~~~~~~~~n~~~g~~~~dg~~~~~sw~~g~~~~~~~~~~~~~~ 592 (788)
.+...+......++. ......+||++|||+.|+.+++. . .
T Consensus 419 ~~~~~l~~~~~~~~~--~~~~~~~n~l~nHD~~R~~~~~~--------------------------~------------~ 458 (598)
T PRK10785 419 TCAAWMDEYRAGLPH--QQQLRQFNQLDSHDTARFKTLLG--------------------------G------------D 458 (598)
T ss_pred HHHHHHHHHHHhCCH--HHHHHhhhccCCCccchhhhhhC--------------------------C------------C
Confidence 444444322111210 01124679999999999876542 0 0
Q ss_pred HHHHHHHHHHHHhcCCceEEecccccccCCCCCCCCcCCCCCccccccCcccCcchHHHHHHHHHHHHHhhCccCCCCCC
Q 003901 593 RRQMRNFFLCLMVSQGVPMISMGDEYGHTKGGNNNTYCHDNDINYFRWDKKEESKSDFFRFCCLLTKFRHECESLGLSDF 672 (788)
Q Consensus 593 ~~~~r~a~alllt~pGiP~Iy~GdE~G~~~~g~~n~y~~~~~~~~~~W~~~~~~~~~l~~~~r~Li~lRk~~~aL~~g~~ 672 (788)
.+++|+|++++||+||+||||||||+|+++. .++ +.|.+|+|+....+ .++++++|+|++|||++|+|+.|++
T Consensus 459 ~~~~kla~~ll~t~pGiP~IYYGdE~G~~g~--~dp----~~R~~m~W~~~~~~-~~l~~~~r~Li~lRk~~~aL~~G~~ 531 (598)
T PRK10785 459 KARMPLALVWLFTWPGVPCIYYGDEVGLDGG--NDP----FCRKPFPWDEAKQD-GALLALYQRMIALRKKSQALRRGGC 531 (598)
T ss_pred HHHHHHHHHHHHhCCCCcEEEeeeeccccCC--CCC----CccCCcCCCcccCc-hHHHHHHHHHHHHHhhCcccccCcE
Confidence 3567899999999999999999999999753 333 34678999876655 7999999999999999999999987
Q ss_pred CCccceeeccCCCCCCCCCCCCcEEEEEEEcCCCCEEEEEEeCCCCcEEEECCC
Q 003901 673 PTADRLQWHGHAPGLPDWSDKSRFVAFTLIDSVKGEIYVAFNASHLPVIISLPK 726 (788)
Q Consensus 673 ~~~~~~~~~~~~~~~~~~~~~~~vlaf~r~~~~~~~i~Vv~N~~~~~~~v~Lp~ 726 (788)
.. ...++++++|.|...+ +.++|++|.+ ..+++.||.
T Consensus 532 ~~---------------l~~~~~v~af~R~~~~-~~vlVviN~s-~~~~v~lp~ 568 (598)
T PRK10785 532 QV---------------LYAEGNVVVFARVLQQ-QRVLVAINRG-EACEVVLPA 568 (598)
T ss_pred EE---------------EEeCCCEEEEEEECCC-CEEEEEEECC-CCeEEeccc
Confidence 54 1224679999998765 8999999999 678898886
No 19
>PLN02960 alpha-amylase
Probab=100.00 E-value=4e-61 Score=552.68 Aligned_cols=542 Identities=19% Similarity=0.235 Sum_probs=341.7
Q ss_pred CCCEEEEEEcCCCCCceeeEEEcCCcCCCCCcccCCcccccCcccceeeecccccCCCCCCCCCCcceecccCC--CCCC
Q 003901 147 TGDVWHVFLKGDFKDMLYGYKFDGKFSPQEGHYFDPTKIVLDPYAKAVISRAQFGVLGPDENCWPQMACLVPTP--EDEF 224 (788)
Q Consensus 147 ~~gvW~~~i~~~~~~~~Y~y~~~g~~~~~~g~~~~~~~~~~DPya~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 224 (788)
.+|+|+.+||+..+|.+|+|+|+.. +|. ...+||||+.+..... +. ...+++.+. ...|
T Consensus 323 ~~gw~~~~ip~~~hG~~Yky~v~~~----~g~-----~~~vdpyA~~~qp~~~----~~------~~~~v~~d~~~~~~y 383 (897)
T PLN02960 323 RKAWLKKYIPAIPHGSKYRVYFNTP----DGP-----LERVPAWATYVLPDPD----GK------QWYAIHWEPPPEEAY 383 (897)
T ss_pred CCcEEEEEccCCCCCCEEEEEEEeC----CCc-----eEECCCcceeEeecCC----Cc------cceEEEeCCCCCCCC
Confidence 4577777788888888888888632 121 1357999998743211 00 012233232 2469
Q ss_pred CCCCCCCCCCCCCCeEEEEEeccCcccCCCCCCCCCcCHHHHHhh-hHHHHHcCCCeEEECcccccCccCcccCCCCCCC
Q 003901 225 DWEGDLPLKYPQRDLIIYEVHVRGFTRHESSKTEHPGTYLGVVEK-LDHLKDLGINCLELMPCHEFNELEYFSYNSVLGD 303 (788)
Q Consensus 225 ~W~~~~~~~~~~~~~viYei~v~~Ft~~~~s~~~~~G~~~gl~~~-L~yLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~ 303 (788)
+|+++.+. .+++++|||+||+.|+. ....|||++++++ |+|||+||||+||||||+++.. ...
T Consensus 384 ~W~~~~p~--~~~~~vIYElHvg~~~~-----e~~~gtf~~~~e~~LdYLk~LGvt~IeLmPv~e~~~---------~~s 447 (897)
T PLN02960 384 KWKFERPK--VPKSLRIYECHVGISGS-----EPKISSFKEFTQKVLPHVKKAGYNAIQLIGVQEHKD---------YSS 447 (897)
T ss_pred CCCCCCCC--CCCCcEEEEEecccccC-----CCCCCCHHHHHHHHHHHHHHcCCCEEEECCcccCCC---------CCC
Confidence 99876432 45789999999998864 1246999999977 8999999999999999998752 334
Q ss_pred cccCCCCC--CCCCCCcHHHHHHHHHHHHHcCCEEEEEeeeccccCCCCCCCccccCCCCCccceeeCCCCCcccCCCCc
Q 003901 304 YNYSSAGI--RNCGHDAINEFKLLVREAHKRGIEVVMDVVFNHTVEGNDKGPILSFRGVDNSVYYMLAPKGEFYNYSGCG 381 (788)
Q Consensus 304 wgY~~~~~--~~~~~G~~~elk~lV~~aH~~Gi~VilDvV~NH~~~~~~~~~~~~~~~~~~~~yy~~~~~g~~~~~~g~~ 381 (788)
|||++.+| ++++||+++|||+||++||++||+||||+|+||++.++..+ ...|.+. +..||..+..|. ...+|+
T Consensus 448 wGY~~~~yfa~~~~yGtp~dfk~LVd~aH~~GI~VILDvV~NH~~~d~~~~-L~~FDG~-~~~Yf~~~~~g~-~~~WG~- 523 (897)
T PLN02960 448 VGYKVTNFFAVSSRFGTPDDFKRLVDEAHGLGLLVFLDIVHSYAAADEMVG-LSLFDGS-NDCYFHSGKRGH-HKRWGT- 523 (897)
T ss_pred CCCCcccCCCcccccCCHHHHHHHHHHHHHCCCEEEEEecccccCCccccc-hhhcCCC-ccceeecCCCCc-cCCCCC-
Confidence 89999988 89999999999999999999999999999999999875322 2234442 223554444443 333444
Q ss_pred cccCCCCHHHHHHHHHHHHHHHHhcCccEEEEecccccc-cCCCccccccccCc-cccCCccccCCCCCChHHHHHHHc-
Q 003901 382 NTFNCNHPVVRQFIVDCLRYWVTEMHVDGFRFDLASIMT-RGSSLWDSVNVYGI-PIEGDLLTTGTPLRSPPLIDLISN- 458 (788)
Q Consensus 382 ~dln~~~p~vr~~i~d~l~~W~~e~gVDGFR~D~a~~l~-~~~~~w~~~~~~g~-~~~~~~~~~g~~~~~~~~~~~i~~- 458 (788)
..+|+.+++||++|+++++||++||||||||||+++.|- .+.++.. ..|. .+..+.. .......+++.+..
T Consensus 524 ~~fNy~~~eVr~fLlsna~yWl~EyhIDGfR~DAV~sMlY~d~g~~~---~~G~~~~~~n~~---~d~~Ai~fL~~lN~~ 597 (897)
T PLN02960 524 RMFKYGDHEVLHFLLSNLNWWVTEYRVDGFQFHSLGSMLYTHNGFAS---FTGDLDEYCNQY---VDRDALIYLILANEM 597 (897)
T ss_pred cccCCCCHHHHHHHHHHHHHHHHHHCCCceeecccceeeeeccCccc---cCCcccccCCcc---CCchHHHHHHHHHHH
Confidence 568999999999999999999999999999999997653 2111100 0000 0000000 11112234444443
Q ss_pred -CCccccceeeeeeccCC-CcccccccCCCCcccccchhHHHHHHHHHhCCCCcHHHHHHHHhCCCCccCCCCCCCCcce
Q 003901 459 -DPILRGVKLIAEAWDTG-GLYQVGIFPHWGIWSEWNGKYRDIVRQFIKGTDGFAGAFAECLCGSPNLYQGGGRKPWNSI 536 (788)
Q Consensus 459 -~~~~~~~~ligE~w~~~-~~~~~~~~~~~~~~~~~n~~f~~~lr~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~p~~~v 536 (788)
....|++++|||....- .+...-.-.+.||+..||+.+.+.+..+++....-... ...+.++... ....+.+.|
T Consensus 598 v~~~~P~vilIAEdss~~P~vt~P~~~GGLGFDYkwnmG~~~d~l~~l~~~~~r~~~-~~~l~~s~~~---~~~~~~~~v 673 (897)
T PLN02960 598 LHQLHPNIITIAEDATFYPGLCEPTSQGGLGFDYYVNLSPSEMWLSLLENVPDQEWS-MSKIVSTLVK---NKENADKML 673 (897)
T ss_pred HHhhCCCeEEEEECCCCCCCccccCCCCCCCcccccCCCcHHHHHHHHHhCcCCCCC-hhccEeeecc---CcCCcceEE
Confidence 23457999999976432 22211122345788999998888888877653210000 1123333210 124667889
Q ss_pred eecccCCC-----cchhhhhhhcccccccCCCCCCCCCCCCCCCCcCCCCcchhHHHHH-HHHHHHHHHHHHHHhcCCce
Q 003901 537 NFVCAHDG-----FSLADLVSYNQKHNLANGEDNNDGETHNNSWNCGQEGEFANILVKK-LRRRQMRNFFLCLMVSQGVP 610 (788)
Q Consensus 537 nfv~nHD~-----~rl~d~~~~~~~~n~~~g~~~~dg~~~~~sw~~g~~~~~~~~~~~~-~~~~~~r~a~alllt~pGiP 610 (788)
+|++|||+ -++.+.+.- .+ ...|. .. +..+.+ .....+..++++++ .||+|
T Consensus 674 ~Y~EnHDQVv~Gkrsl~~rL~g---------~~-------~~k~~-~~-----~~~~lRa~al~~~~rllt~~~-~Pg~p 730 (897)
T PLN02960 674 SYAENHNQSISGGKSFAEILLG---------KN-------KESSP-AV-----KELLLRGVSLHKMIRLITFTL-GGSAY 730 (897)
T ss_pred EEecCcCccccCcccHHHHCCC---------ch-------hhhhc-cc-----ChhhhhhhhHHHHHHHHHHHh-CCCCC
Confidence 99999998 333333320 00 00010 00 000000 00111222344444 49999
Q ss_pred EEecccccccCCC------CCCCCcCCCCCccccccCcccC-cchHHHHHHHHHHHHHhhCccCCCCCCCCccceeeccC
Q 003901 611 MISMGDEYGHTKG------GNNNTYCHDNDINYFRWDKKEE-SKSDFFRFCCLLTKFRHECESLGLSDFPTADRLQWHGH 683 (788)
Q Consensus 611 ~Iy~GdE~G~~~~------g~~n~y~~~~~~~~~~W~~~~~-~~~~l~~~~r~Li~lRk~~~aL~~g~~~~~~~~~~~~~ 683 (788)
|+|||+|||+... +++.++ ....++|+..+. ....+++|+|.|++||+++|+|+.+....
T Consensus 731 LlFMG~EFGh~e~~~~PdP~n~~tf----~~s~LdW~Ll~~~~h~~l~~f~rdL~~Lr~~~paL~~g~~~i--------- 797 (897)
T PLN02960 731 LNFMGNEFGHPERVEFPRASNNFSF----SLANRRWDLLEDGVHAHLFSFDKALMALDEKYLILSRGLPNI--------- 797 (897)
T ss_pred EeeCccccCChhhhhCcCCCCcccc----ccccCCcccccChhHHHHHHHHHHHHHHHhcChhhcCCccee---------
Confidence 9999999998542 111111 235689998664 24789999999999999999997553211
Q ss_pred CCCCCCCCCCCcEEEEEEEcCCCCEEEEEEeCCCCc----EEEECCCCCCCCeEEEecCCCCCCCCccCCCCch-h-hhh
Q 003901 684 APGLPDWSDKSRFVAFTLIDSVKGEIYVAFNASHLP----VIISLPKRPGYRWEPLVDTSKPEPFDFLSSDLPA-K-EIA 757 (788)
Q Consensus 684 ~~~~~~~~~~~~vlaf~r~~~~~~~i~Vv~N~~~~~----~~v~Lp~~~g~~w~~l~d~~~~~~~~~~~~~~~~-~-~~~ 757 (788)
...+.+.+|++|.|. .++||+|++... ..+.+|. .+.|++|++|......+........ . .+.
T Consensus 798 ----~~~d~~~~Viaf~R~-----~llvV~NFsp~~~~~~Y~vgvP~--~G~y~eilNSD~~~yGG~g~~~~~~~~~~t~ 866 (897)
T PLN02960 798 ----HHVNDTSMVISFTRG-----PLLFAFNFHPTNSYEEYEVGVEE--AGEYELILNTDEVKYGGQGRLTEDQYLQRTK 866 (897)
T ss_pred ----eeecCCCCEEEEEeC-----CeEEEEeCCCCCcCcCceECCCC--CCcEEEEEeCchhhcCCCCccCCCcceeecc
Confidence 012346789999992 489999999742 3444553 3499999999876432221111110 0 112
Q ss_pred hhhcCCCCCCeeEEeeCCeEEEEEecC
Q 003901 758 IKQYAPFLDANLYPMLSYSSIILLLSP 784 (788)
Q Consensus 758 ~~~~~~~~~~~~~~v~~~s~~vl~~~~ 784 (788)
..++..+..+..++|||+|++||.+.+
T Consensus 867 ~~~~~g~~~si~i~LPp~sa~v~k~~~ 893 (897)
T PLN02960 867 SKRIDGLRNCLELTLPSRSAQVYKLAR 893 (897)
T ss_pred ccccCCCCceEEEEeCCCEEEEEEEee
Confidence 223455667889999999999998764
No 20
>COG0296 GlgB 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.6e-61 Score=544.56 Aligned_cols=576 Identities=22% Similarity=0.314 Sum_probs=376.3
Q ss_pred CCCCCCCcEEeCC---cEEEEEEcCCCCEEEEEEEeCCCccCCceeeEEecccccCCCCCEEEEEEcCCCCCceeeEEEc
Q 003901 93 GYPTPFGATLRDG---GVNFSIFSSNAVSATLCLITLSDLQENKVTEEIALDSFANKTGDVWHVFLKGDFKDMLYGYKFD 169 (788)
Q Consensus 93 g~~~~lGa~~~~~---~~~F~vwap~A~~V~L~l~~~~d~~~~~~~~~~~l~~~~~~~~gvW~~~i~~~~~~~~Y~y~~~ 169 (788)
....+|||+.... +|+|+||||+|++|.|+ ++||+|.. ...+|. ...+.|+|+++||+...|..|+|++.
T Consensus 21 ~~~~~~GA~~~~~g~~~~~F~vWAP~a~~V~vv----gdfn~w~~-~~~~~~--~~~~~G~we~~vp~~~~G~~Yky~l~ 93 (628)
T COG0296 21 RLYEKLGAHPIENGVSGVRFRVWAPNARRVSLV----GDFNDWDG-RRMPMR--DRKESGIWELFVPGAPPGTRYKYELI 93 (628)
T ss_pred hhHhhhCcccccCCCCceEEEEECCCCCeEEEE----eecCCccc-eecccc--cCCCCceEEEeccCCCCCCeEEEEEe
Confidence 3345899997643 59999999999999999 78888763 344442 22366999999999999999999998
Q ss_pred CCcCCCCCcccCCcccccCcccceeeecccccCCCCCCCCCCcceecccCCCCCCCCC----CCCCCCCCCCCeEEEEEe
Q 003901 170 GKFSPQEGHYFDPTKIVLDPYAKAVISRAQFGVLGPDENCWPQMACLVPTPEDEFDWE----GDLPLKYPQRDLIIYEVH 245 (788)
Q Consensus 170 g~~~~~~g~~~~~~~~~~DPya~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~----~~~~~~~~~~~~viYei~ 245 (788)
+. .|.. ..+.||||+..... +..+++|.+. .+|.|+ ...+...++++++|||+|
T Consensus 94 ~~----~g~~----~~~~DP~a~~~~~~-------------p~~aS~v~~~-~~y~W~d~~~~~~~~~~~~e~~vIYElH 151 (628)
T COG0296 94 DP----SGQL----RLKADPYARRQEVG-------------PHTASQVVDL-PDYEWQDERWDRAWRGRFWEPIVIYELH 151 (628)
T ss_pred CC----CCce----eeccCchhhccCCC-------------CCCcceecCC-CCcccccccccccccCCCCCCceEEEEE
Confidence 54 3432 35799999986321 1234555442 358898 444555678999999999
Q ss_pred ccCcccCCCCCCCCCcCHHHHHhhhHHHHHcCCCeEEECcccccCccCcccCCCCCCCcccCCCCC--CCCCCCcHHHHH
Q 003901 246 VRGFTRHESSKTEHPGTYLGVVEKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYNYSSAGI--RNCGHDAINEFK 323 (788)
Q Consensus 246 v~~Ft~~~~s~~~~~G~~~gl~~~L~yLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~wgY~~~~~--~~~~~G~~~elk 323 (788)
+.+|+. + ...|++...+++|||||+||||||+||||.+++... .|||+..++ +.++||+++|||
T Consensus 152 vGs~~~----~-~~~~~~e~a~~llpYl~elG~T~IELMPv~e~p~~~---------sWGYq~~g~yAp~sryGtPedfk 217 (628)
T COG0296 152 VGSFTP----D-RFLGYFELAIELLPYLKELGITHIELMPVAEHPGDR---------SWGYQGTGYYAPTSRYGTPEDFK 217 (628)
T ss_pred eeeccC----C-CCcCHHHHHHHHhHHHHHhCCCEEEEcccccCCCCC---------CCCCCcceeccccccCCCHHHHH
Confidence 999988 3 567999999999999999999999999999987543 388888877 778999999999
Q ss_pred HHHHHHHHcCCEEEEEeeeccccCCCCCCCccccCCCCCccceeeCCCCCcccCCCCcc-ccCCCCHHHHHHHHHHHHHH
Q 003901 324 LLVREAHKRGIEVVMDVVFNHTVEGNDKGPILSFRGVDNSVYYMLAPKGEFYNYSGCGN-TFNCNHPVVRQFIVDCLRYW 402 (788)
Q Consensus 324 ~lV~~aH~~Gi~VilDvV~NH~~~~~~~~~~~~~~~~~~~~yy~~~~~g~~~~~~g~~~-dln~~~p~vr~~i~d~l~~W 402 (788)
+||++||++||.||||+|+||++.+.. .... +++..+|...+..+.. -..+|. .+|+.+++||+||+++++||
T Consensus 218 ~fVD~aH~~GIgViLD~V~~HF~~d~~--~L~~---fdg~~~~e~~~~~~~~-~~~Wg~~i~~~gr~EVR~Fll~nal~W 291 (628)
T COG0296 218 ALVDAAHQAGIGVILDWVPNHFPPDGN--YLAR---FDGTFLYEHEDPRRGE-HTDWGTAIFNYGRNEVRNFLLANALYW 291 (628)
T ss_pred HHHHHHHHcCCEEEEEecCCcCCCCcc--hhhh---cCCccccccCCccccc-CCCcccchhccCcHHHHHHHHHHHHHH
Confidence 999999999999999999999987432 1112 2334444432211111 012233 33455999999999999999
Q ss_pred HHhcCccEEEEecccccccCC-----CccccccccCccccCCccccCCCCCChHHHHHHHc-----CCccccceeeeeec
Q 003901 403 VTEMHVDGFRFDLASIMTRGS-----SLWDSVNVYGIPIEGDLLTTGTPLRSPPLIDLISN-----DPILRGVKLIAEAW 472 (788)
Q Consensus 403 ~~e~gVDGFR~D~a~~l~~~~-----~~w~~~~~~g~~~~~~~~~~g~~~~~~~~~~~i~~-----~~~~~~~~ligE~w 472 (788)
+++|||||||+||+..|.... ..|.. +.+|+.- +...++-+.+ ....|+++.|+|.|
T Consensus 292 l~~yHiDGlRvDAV~smly~d~~~~~~~~~~-n~~ggr~------------n~~a~efl~~~n~~i~~~~pg~~~iaees 358 (628)
T COG0296 292 LEEYHIDGLRVDAVASMLYLDYSRAEGEWVP-NEYGGRE------------NLEAAEFLRNLNSLIHEEEPGAMTIAEES 358 (628)
T ss_pred HHHhCCcceeeehhhhhhccchhhhhhcccc-cccCCcc------------cHHHHHHhhhhhhhhcccCCCceeeeeec
Confidence 999999999999998774221 11221 3332211 1112222221 23456889999999
Q ss_pred cCCCccccc-ccCCCCcccccchh-HHHHHHHHHhCCCCcHHHHHHHHhCCCCccCCCCCCCCcceeecccCCCcchhhh
Q 003901 473 DTGGLYQVG-IFPHWGIWSEWNGK-YRDIVRQFIKGTDGFAGAFAECLCGSPNLYQGGGRKPWNSINFVCAHDGFSLADL 550 (788)
Q Consensus 473 ~~~~~~~~~-~~~~~~~~~~~n~~-f~~~lr~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~p~~~vnfv~nHD~~rl~d~ 550 (788)
......... .....++...||+. ++|.+..+.+ +.-+. ..-.+.... .--..+...+.|+.|||+.
T Consensus 359 td~~~~t~~~~~gG~gf~yk~nmg~m~D~~~y~~~-~~~~r----~~~h~~~tf--~~~y~~se~~~l~~sHDev----- 426 (628)
T COG0296 359 TDDPHVTLPVAIGGLGFGYKWNMGWMHDTLFYFGK-DPVYR----KYHHGELTF--GLLYAFSENVVLPLSHDEV----- 426 (628)
T ss_pred cCCCCceeeecccccchhhhhhhhhHhhHHHhccc-Ccccc----ccccCCCcc--ccccccceeEeccccccce-----
Confidence 764322111 11233466778876 4555544422 11110 000011100 0002455678899999985
Q ss_pred hhhcccccccCCCCCCCCCCCCCCCCcCCCCcchhHHHHHHHHHHHHHHHHHHHhcCCceEEecccccccCCCCCCCCcC
Q 003901 551 VSYNQKHNLANGEDNNDGETHNNSWNCGQEGEFANILVKKLRRRQMRNFFLCLMVSQGVPMISMGDEYGHTKGGNNNTYC 630 (788)
Q Consensus 551 ~~~~~~~n~~~g~~~~dg~~~~~sw~~g~~~~~~~~~~~~~~~~~~r~a~alllt~pGiP~Iy~GdE~G~~~~g~~n~y~ 630 (788)
|. .+.+.++.. ++ ......+.+|+++++++++||+|+||||+|||.....+.
T Consensus 427 vh----Gk~sl~~rm--------------~g------~~~~~~a~lr~~~a~~~~~Pgk~LLFMG~Efgq~~e~~~---- 478 (628)
T COG0296 427 VH----GKRSLGERM--------------PG------DAWQKFANLRALAAYMWLHPGKPLLFMGEEFGQGREWNF---- 478 (628)
T ss_pred ee----cccchhccC--------------Cc------chhhhHHHHHHHHHHHHhCCCceeeecchhhccCCCCcc----
Confidence 10 111112111 00 012346788999999999999999999999999876542
Q ss_pred CCCCccccccCcccC---c--chHHHHHHHHHHHHHhhCccCCCCCCCCccceeeccCCCCCCCCCCCCcEEEEEEE-c-
Q 003901 631 HDNDINYFRWDKKEE---S--KSDFFRFCCLLTKFRHECESLGLSDFPTADRLQWHGHAPGLPDWSDKSRFVAFTLI-D- 703 (788)
Q Consensus 631 ~~~~~~~~~W~~~~~---~--~~~l~~~~r~Li~lRk~~~aL~~g~~~~~~~~~~~~~~~~~~~~~~~~~vlaf~r~-~- 703 (788)
...++|..... . .+.+..+.+.|.++-+..+++...++.. +.+.|.... +...++++|.|. .
T Consensus 479 ----~~~~~w~~L~~~~~~g~~~~~~~~~~~ln~~y~~~~~l~~~~~~~-~~~~W~~~~------~~~~~v~af~R~l~~ 547 (628)
T COG0296 479 ----FSSLDWLLLDQAVREGRHKEFRRLVRDLNALYRIPDPLHEQDFQP-EGFEWIDAD------DAENSVLAFYRRLLA 547 (628)
T ss_pred ----cCCCChhhhhhccccchHHHHHHHHHhhHHhhccCCccchhhhcc-cCCceeecC------chhhhHHHHHHHHhh
Confidence 23467744332 1 4778888888888888899998877655 566664321 122379999995 2
Q ss_pred CCCCEEEEEEeCCCCcE-EEECCCCCCCCeEEEecCCCCCCCCccCCCCch-hhhhhhhcCCCCCCeeEEeeCCeEEEEE
Q 003901 704 SVKGEIYVAFNASHLPV-IISLPKRPGYRWEPLVDTSKPEPFDFLSSDLPA-KEIAIKQYAPFLDANLYPMLSYSSIILL 781 (788)
Q Consensus 704 ~~~~~i~Vv~N~~~~~~-~v~Lp~~~g~~w~~l~d~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~v~~~s~~vl~ 781 (788)
...+.++|+.|++.... .+.++...+++|+.++++......+........ .++.........-+..+.+||.+++||.
T Consensus 548 ~~~~~lv~~~n~~~~~~~~y~~~~~~~g~~~~~lntd~~~~ggs~~~~~~~~~~~~~~~~~~~~~~~~~~lpp~~~~~l~ 627 (628)
T COG0296 548 LRHEHLVVVNNFTPVPRVDYRVGVPVAGRWREVLNTDLAEYGGSGAGNLGLPVSGEDILWHGREWSLSLTLPPLAALVLK 627 (628)
T ss_pred cCCceEEEEeCCCCCcccccccCCcccccEEEeccchHHHhcCCccccccceecceeeeccCcceeeEEecCCceeeEee
Confidence 33345888888887543 444444345589999998665433332211111 2222111122234678899999999984
No 21
>PRK10933 trehalose-6-phosphate hydrolase; Provisional
Probab=100.00 E-value=9.6e-58 Score=524.82 Aligned_cols=451 Identities=19% Similarity=0.288 Sum_probs=304.7
Q ss_pred CCCCeEEEEEeccCcccCCCCCCCCCcCHHHHHhhhHHHHHcCCCeEEECcccccCccCcccCCCCCCCcccCCCCC--C
Q 003901 235 PQRDLIIYEVHVRGFTRHESSKTEHPGTYLGVVEKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYNYSSAGI--R 312 (788)
Q Consensus 235 ~~~~~viYei~v~~Ft~~~~s~~~~~G~~~gl~~~L~yLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~wgY~~~~~--~ 312 (788)
+|++.|||||++++|.+++ ....|||+|++++|+|||+||||+|||+||++.+.. .+||++.+| +
T Consensus 7 W~~~~v~Yqi~~~~f~d~~---~~~~Gdl~gi~~~ldyl~~lGv~~i~l~P~~~~~~~----------~~gY~~~d~~~i 73 (551)
T PRK10933 7 WWQNGVIYQIYPKSFQDTT---GSGTGDLRGVTQRLDYLQKLGVDAIWLTPFYVSPQV----------DNGYDVANYTAI 73 (551)
T ss_pred hhhcCeEEEEEchHhhcCC---CCCCcCHHHHHHhhHHHHhCCCCEEEECCCCCCCCC----------CCCCCcccCCCc
Confidence 6789999999999998854 345799999999999999999999999999975421 268999888 8
Q ss_pred CCCCCcHHHHHHHHHHHHHcCCEEEEEeeeccccCCCCCCCccccCCCCCccceeeCCC---------------------
Q 003901 313 NCGHDAINEFKLLVREAHKRGIEVVMDVVFNHTVEGNDKGPILSFRGVDNSVYYMLAPK--------------------- 371 (788)
Q Consensus 313 ~~~~G~~~elk~lV~~aH~~Gi~VilDvV~NH~~~~~~~~~~~~~~~~~~~~yy~~~~~--------------------- 371 (788)
+++|||.+|||+||++||++||+||||+|+||++..|+|+....-+......||.+.+.
T Consensus 74 d~~~Gt~~d~~~lv~~~h~~gi~vilD~V~NH~s~~~~wf~~~~~~~~~y~d~y~~~~~~~~~~~~~~~~~~~~~~w~~~ 153 (551)
T PRK10933 74 DPTYGTLDDFDELVAQAKSRGIRIILDMVFNHTSTQHAWFREALNKESPYRQFYIWRDGEPETPPNNWRSKFGGSAWRWH 153 (551)
T ss_pred CcccCCHHHHHHHHHHHHHCCCEEEEEECCCCccCchhHHHhhcCCCCCCcCceEecCCCCCCCCCcccccCCCcccccc
Confidence 99999999999999999999999999999999999887643221111112345543210
Q ss_pred ---CCcc--cCCCCccccCCCCHHHHHHHHHHHHHHHHhcCccEEEEecccccccCCCccccccccCccccCCccccCCC
Q 003901 372 ---GEFY--NYSGCGNTFNCNHPVVRQFIVDCLRYWVTEMHVDGFRFDLASIMTRGSSLWDSVNVYGIPIEGDLLTTGTP 446 (788)
Q Consensus 372 ---g~~~--~~~g~~~dln~~~p~vr~~i~d~l~~W~~e~gVDGFR~D~a~~l~~~~~~w~~~~~~g~~~~~~~~~~g~~ 446 (788)
+.++ .|....+|||++||+||++|++++++|+ ++||||||||+|+++.+...||+....-.. ......+
T Consensus 154 ~~~~~~y~~~f~~~~pdLn~~np~V~~~l~~~~~~W~-~~GvDGfRlDa~~~i~~~~~~~~~~~~~~~-----~~~~~~~ 227 (551)
T PRK10933 154 AESEQYYLHLFAPEQADLNWENPAVRAELKKVCEFWA-DRGVDGLRLDVVNLISKDQDFPDDLDGDGR-----RFYTDGP 227 (551)
T ss_pred CCCCceEeecccccCCccCCCCHHHHHHHHHHHHHHH-HCCCcEEEEcchhhcCcCCCCCCCcccccc-----cccCCCh
Confidence 0111 1122468999999999999999999999 799999999999999887677764210000 0000000
Q ss_pred CCChHHHHHHHcCC-ccccceeeeeeccCCCccccccc---CCCCcccccchhHHHHHHHHHhCCCC-----cHHHHHHH
Q 003901 447 LRSPPLIDLISNDP-ILRGVKLIAEAWDTGGLYQVGIF---PHWGIWSEWNGKYRDIVRQFIKGTDG-----FAGAFAEC 517 (788)
Q Consensus 447 ~~~~~~~~~i~~~~-~~~~~~ligE~w~~~~~~~~~~~---~~~~~~~~~n~~f~~~lr~~~~g~~~-----~~~~~~~~ 517 (788)
....+++.+...- ...+++++||.|.... .....+ ....++..+| |......+..|... ....+...
T Consensus 228 -~~~~~l~~~~~~~~~~~~~~~vgE~~~~~~-~~~~~y~~~~~~~~~~~fn--f~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (551)
T PRK10933 228 -RAHEFLQEMNRDVFTPRGLMTVGEMSSTSL-EHCQRYAALTGSELSMTFN--FHHLKVDYPNGEKWTLAKPDFVALKTL 303 (551)
T ss_pred -HHHHHHHHHHHHhhcccCcEEEEeecCCCH-HHHHHhhcccCCeeeeEec--HHHhhhhhccCCcccccccCHHHHHHH
Confidence 1123555554321 1235789999986321 000011 1111233344 44444444444221 12233333
Q ss_pred HhCCCCccCCCCCCCCcceeecccCCCcchhhhhhhcccccccCCCCCCCCCCCCCCCCcCCCCcchhHHHHHHHHHHHH
Q 003901 518 LCGSPNLYQGGGRKPWNSINFVCAHDGFSLADLVSYNQKHNLANGEDNNDGETHNNSWNCGQEGEFANILVKKLRRRQMR 597 (788)
Q Consensus 518 l~~~~~~~~~~~~~p~~~vnfv~nHD~~rl~d~~~~~~~~n~~~g~~~~dg~~~~~sw~~g~~~~~~~~~~~~~~~~~~r 597 (788)
+......+. ......+|++|||+.|+.+.+. .+. +.+...++
T Consensus 304 ~~~~~~~~~----~~~~~~~fl~NHD~~R~~sr~g--------------------------~~~--------~~~~~~ak 345 (551)
T PRK10933 304 FRHWQQGMH----NVAWNALFWCNHDQPRIVSRFG--------------------------DEG--------EYRVPAAK 345 (551)
T ss_pred HHHHHHhhc----ccCeeccccCCCCcccHHHHcC--------------------------Cch--------hHHHHHHH
Confidence 322111111 1123346999999999876542 100 12334567
Q ss_pred HHHHHHHhcCCceEEecccccccCCCCC----------------------CCC---------cCCCCCccccccCccc--
Q 003901 598 NFFLCLMVSQGVPMISMGDEYGHTKGGN----------------------NNT---------YCHDNDINYFRWDKKE-- 644 (788)
Q Consensus 598 ~a~alllt~pGiP~Iy~GdE~G~~~~g~----------------------~n~---------y~~~~~~~~~~W~~~~-- 644 (788)
++++++||+||+||||||||+||++..- .+. -.+++.|.+|+|+...
T Consensus 346 lla~ll~tlpG~P~IYyGeEiGm~~~~~~~~~~~~D~~~~~~~~~~~~~g~~~~~~~~~~~~~~Rd~~RtPMqW~~~~~~ 425 (551)
T PRK10933 346 MLAMVLHGMQGTPYIYQGEEIGMTNPHFTRITDYRDVESLNMFAELRNDGRDADELLAILASKSRDNSRTPMQWDNGDNA 425 (551)
T ss_pred HHHHHHHhCCCceEEEeecccCCCCCCCCCHHHhcCHHHHHHHHHHhhcCCCHHHHHhhhhccCCCCCccccccCCCCCC
Confidence 7888999999999999999999987310 001 1356679999998754
Q ss_pred ------------------------CcchHHHHHHHHHHHHHhhCccCCCCCCCCccceeeccCCCCCCCCCCCCcEEEEE
Q 003901 645 ------------------------ESKSDFFRFCCLLTKFRHECESLGLSDFPTADRLQWHGHAPGLPDWSDKSRFVAFT 700 (788)
Q Consensus 645 ------------------------~~~~~l~~~~r~Li~lRk~~~aL~~g~~~~~~~~~~~~~~~~~~~~~~~~~vlaf~ 700 (788)
.++.++++|||+||+|||++|+|+.|++..+ ...+..|++|.
T Consensus 426 GFs~~~pwl~~~~~~~~inv~~Q~~~~~Sll~~yk~Li~lRk~~~aL~~G~~~~~--------------~~~~~~v~af~ 491 (551)
T PRK10933 426 GFTQGEPWIGLCDNYQEINVEAALADEDSVFYTYQKLIALRKQEPVLTWGDYQDL--------------LPNHPSLWCYR 491 (551)
T ss_pred CCCCCCCCCCCCcccccccHHHHhcCcccHHHHHHHHHHHhhcChhhccceeEEe--------------ccCCCcEEEEE
Confidence 1347899999999999999999999987541 22345799999
Q ss_pred EEcCCCCEEEEEEeCCCCcEEEECCCCCCCCeEEEecCCCCCCCCccCCCCchhhhhhhhcCCCCCCeeEEeeCCeEEEE
Q 003901 701 LIDSVKGEIYVAFNASHLPVIISLPKRPGYRWEPLVDTSKPEPFDFLSSDLPAKEIAIKQYAPFLDANLYPMLSYSSIIL 780 (788)
Q Consensus 701 r~~~~~~~i~Vv~N~~~~~~~v~Lp~~~g~~w~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~~vl 780 (788)
|...+ +.++||+|++..++++.+|... +.|+.++.+.... . . ....++|+|++++|+
T Consensus 492 R~~~~-~~~lvv~N~s~~~~~~~~~~~~-~~~~~~l~~~~~~----~--~---------------~~~~~~L~p~~~~~~ 548 (551)
T PRK10933 492 REWQG-QTLLVIANLSREPQPWQPGQMR-GNWQLLMHNYEEA----S--P---------------QPCAMTLRPFEAVWW 548 (551)
T ss_pred EEcCC-cEEEEEEECCCCCeeeecCccc-CCceEEeecCccc----c--C---------------CCCcEEECCCeEEEE
Confidence 98876 8999999999999999988432 3688777642110 0 0 013478999999998
Q ss_pred Eec
Q 003901 781 LLS 783 (788)
Q Consensus 781 ~~~ 783 (788)
.++
T Consensus 549 ~~~ 551 (551)
T PRK10933 549 LQK 551 (551)
T ss_pred EeC
Confidence 764
No 22
>TIGR02403 trehalose_treC alpha,alpha-phosphotrehalase. Trehalose is a glucose disaccharide that serves in many biological systems as a compatible solute for protection against hyperosmotic and thermal stress. This family describes trehalose-6-phosphate hydrolase, product of the treC (or treA) gene, which is often found together with a trehalose uptake transporter and a trehalose operon repressor.
Probab=100.00 E-value=5.2e-58 Score=528.05 Aligned_cols=450 Identities=20% Similarity=0.274 Sum_probs=301.0
Q ss_pred CCCCeEEEEEeccCcccCCCCCCCCCcCHHHHHhhhHHHHHcCCCeEEECcccccCccCcccCCCCCCCcccCCCCC--C
Q 003901 235 PQRDLIIYEVHVRGFTRHESSKTEHPGTYLGVVEKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYNYSSAGI--R 312 (788)
Q Consensus 235 ~~~~~viYei~v~~Ft~~~~s~~~~~G~~~gl~~~L~yLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~wgY~~~~~--~ 312 (788)
+|++.|||||++++|++++ .+..|||+|++++|+||++||||+|||+||++.+.. .++|++.+| +
T Consensus 1 W~~~~v~Y~i~~~~f~~~~---~~~~G~~~gi~~~l~yl~~lG~~~i~l~Pi~~~~~~----------~~gY~~~d~~~i 67 (543)
T TIGR02403 1 WWQKKVIYQIYPKSFYDST---GDGTGDLRGIIEKLDYLKKLGVDYIWLNPFYVSPQK----------DNGYDVSDYYAI 67 (543)
T ss_pred CcccCEEEEEEhHHHhcCC---CCCccCHHHHHHhHHHHHHcCCCEEEECCcccCCCC----------CCCCCccccCcc
Confidence 4688999999999998743 345799999999999999999999999999986432 258888887 8
Q ss_pred CCCCCcHHHHHHHHHHHHHcCCEEEEEeeeccccCCCCCCCccccCCCCCccceeeCC-C--------------------
Q 003901 313 NCGHDAINEFKLLVREAHKRGIEVVMDVVFNHTVEGNDKGPILSFRGVDNSVYYMLAP-K-------------------- 371 (788)
Q Consensus 313 ~~~~G~~~elk~lV~~aH~~Gi~VilDvV~NH~~~~~~~~~~~~~~~~~~~~yy~~~~-~-------------------- 371 (788)
+|+||+.+||++||++||++||+||||+|+||++.+|+|+....-......+||.+.+ .
T Consensus 68 d~~~Gt~~~~~~lv~~ah~~gi~vilD~v~NH~~~~~~~f~~~~~~~~~y~~~y~~~~~~~~~~~~~~~~~~~~~w~~~~ 147 (543)
T TIGR02403 68 NPLFGTMADFEELVSEAKKRNIKIMLDMVFNHTSTEHEWFKKALAGDSPYRDFYIWRDPKGKPPTNWQSKFGGSAWEYFG 147 (543)
T ss_pred CcccCCHHHHHHHHHHHHHCCCEEEEEECccccccchHHHHHhhcCCCcccCceEecCCCCCCCCcccccCCCcCccccC
Confidence 9999999999999999999999999999999999888654211111112234443321 1
Q ss_pred --CCcc--cCCCCccccCCCCHHHHHHHHHHHHHHHHhcCccEEEEecccccccCCCccccccccCccccCCccccCCCC
Q 003901 372 --GEFY--NYSGCGNTFNCNHPVVRQFIVDCLRYWVTEMHVDGFRFDLASIMTRGSSLWDSVNVYGIPIEGDLLTTGTPL 447 (788)
Q Consensus 372 --g~~~--~~~g~~~dln~~~p~vr~~i~d~l~~W~~e~gVDGFR~D~a~~l~~~~~~w~~~~~~g~~~~~~~~~~g~~~ 447 (788)
++++ .|...+++||++||+|+++|++++++|+ ++||||||||++++|.+...+++....- +.......+
T Consensus 148 ~~~~~y~~~f~~~~pdln~~np~v~~~i~~~~~~W~-~~giDGfRlDa~~~i~~~~~~~~~~~~~-----~~~~~~~~~- 220 (543)
T TIGR02403 148 DTGQYYLHLFDKTQADLNWENPEVREELKDVVNFWR-DKGVDGFRLDVINLISKDQFFEDDEIGD-----GRRFYTDGP- 220 (543)
T ss_pred CCCceEEeccCCcCCccCCCCHHHHHHHHHHHHHHH-HcCCCEEEEeeehhhccCcccCCCCCCC-----CccccCCCh-
Confidence 1111 1233468999999999999999999999 6899999999999997655555431100 000000000
Q ss_pred CChHHHHHHHcC-CccccceeeeeeccCCCccccc-ccC-CCCcccccchhHHHHHHHHHhCCC-----CcHHHHHHHHh
Q 003901 448 RSPPLIDLISND-PILRGVKLIAEAWDTGGLYQVG-IFP-HWGIWSEWNGKYRDIVRQFIKGTD-----GFAGAFAECLC 519 (788)
Q Consensus 448 ~~~~~~~~i~~~-~~~~~~~ligE~w~~~~~~~~~-~~~-~~~~~~~~n~~f~~~lr~~~~g~~-----~~~~~~~~~l~ 519 (788)
....+++.++.. ...+++++|||.|......... ... .-.+++.+| |......+..+.. .....+...+.
T Consensus 221 ~~~~f~~~~~~~~~~~~~~~lvgE~~~~~~~~~~~y~~~~~~~~d~~~n--f~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 298 (543)
T TIGR02403 221 RVHEYLQEMNQEVFGDNDSVTVGEMSSTTIENCIRYSNPENKELSMVFT--FHHLKVDYPNGEKWTLAKFDFAKLKEIFS 298 (543)
T ss_pred HHHHHHHHHHHHhhccCCeEEEEEeCCCCHHHHHhhhCCCCCeeCeEEC--hhhhhchhccccccccCCCCHHHHHHHHH
Confidence 012245544321 0145899999999643110000 000 112445565 4444444443321 12233444332
Q ss_pred CCCCccCCCCCCCCcceeecccCCCcchhhhhhhcccccccCCCCCCCCCCCCCCCCcCCCCcchhHHHHHHHHHHHHHH
Q 003901 520 GSPNLYQGGGRKPWNSINFVCAHDGFSLADLVSYNQKHNLANGEDNNDGETHNNSWNCGQEGEFANILVKKLRRRQMRNF 599 (788)
Q Consensus 520 ~~~~~~~~~~~~p~~~vnfv~nHD~~rl~d~~~~~~~~n~~~g~~~~dg~~~~~sw~~g~~~~~~~~~~~~~~~~~~r~a 599 (788)
.....+. ......++|++|||+.|+...+. ... ..+.+.+|++
T Consensus 299 ~~~~~~~---~~~~~~~~fl~NHD~~R~~s~~g--------------------------~~~--------~~~~~~~k~~ 341 (543)
T TIGR02403 299 TWQTGMQ---AGGGWNALFWNNHDQPRAVSRFG--------------------------DDG--------EYRVESAKML 341 (543)
T ss_pred HHHHhcc---ccCcceeeecCCCChhhHHHhcC--------------------------Cch--------hhHHHHHHHH
Confidence 2111111 01223457999999999776552 000 1123456778
Q ss_pred HHHHHhcCCceEEecccccccCCCCCC-------------------------------CCcCCCCCccccccCccc----
Q 003901 600 FLCLMVSQGVPMISMGDEYGHTKGGNN-------------------------------NTYCHDNDINYFRWDKKE---- 644 (788)
Q Consensus 600 ~alllt~pGiP~Iy~GdE~G~~~~g~~-------------------------------n~y~~~~~~~~~~W~~~~---- 644 (788)
++++||+||+||||||||+||++.... +.-.+++.|.+|+|+...
T Consensus 342 a~ll~tlpG~P~IYYGdEiGm~~~~~~~~~~~~D~~~~~~~~~~~~~g~~~~~~~~~~~~~~rd~~RtPm~W~~~~~aGF 421 (543)
T TIGR02403 342 AAAIHLLRGTPYIYQGEEIGMTNPKFTNIEDYRDVESLNAYDILLKKGKSEEEALAILKQKSRDNSRTPMQWNNEKNAGF 421 (543)
T ss_pred HHHHHHCCCCeEEEeccccCCCCCCCCCHHHhcCHHHHHHHHHHhhcCCCHHHHHHhhhccCCCCCccccccCCCCCCCC
Confidence 888999999999999999999864210 012345678999998642
Q ss_pred ----------------------CcchHHHHHHHHHHHHHhhCccCCCCCCCCccceeeccCCCCCCCCCCCCcEEEEEEE
Q 003901 645 ----------------------ESKSDFFRFCCLLTKFRHECESLGLSDFPTADRLQWHGHAPGLPDWSDKSRFVAFTLI 702 (788)
Q Consensus 645 ----------------------~~~~~l~~~~r~Li~lRk~~~aL~~g~~~~~~~~~~~~~~~~~~~~~~~~~vlaf~r~ 702 (788)
..+.++++|||+||+|||++|+|+.|++... ...+++|++|.|.
T Consensus 422 s~~~pwl~~~~~~~~~nv~~q~~~~~Sll~~yr~Li~lRk~~~aL~~G~~~~~--------------~~~~~~v~a~~R~ 487 (543)
T TIGR02403 422 TTGKPWLGVATNYKEINVEKALADDNSIFYFYQKLIALRKSEPVITDGDYQFL--------------LPDDPSVWAYTRT 487 (543)
T ss_pred CCCCCCCCCCCCccccCHHHHhhCCccHHHHHHHHHHHHhhcccccCccEEEe--------------ecCCCcEEEEEEE
Confidence 1247899999999999999999999987551 1223579999998
Q ss_pred cCCCCEEEEEEeCCCCcEEEECCCCCCCCeEEEecCCCCCCCCccCCCCchhhhhhhhcCCCCCCeeEEeeCCeEEEEE
Q 003901 703 DSVKGEIYVAFNASHLPVIISLPKRPGYRWEPLVDTSKPEPFDFLSSDLPAKEIAIKQYAPFLDANLYPMLSYSSIILL 781 (788)
Q Consensus 703 ~~~~~~i~Vv~N~~~~~~~v~Lp~~~g~~w~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~~vl~ 781 (788)
.++ +.++||+|++.+++++.||.... .|..++.+.... . ....+.|+|++++|+.
T Consensus 488 ~~~-~~~lVv~N~s~~~~~~~l~~~~~-~~~~~~~~~~~~-------~---------------~~~~~~L~p~~~~i~~ 542 (543)
T TIGR02403 488 YKN-QKLLVINNFYGEEKTIELPLDLL-SGKILLSNYEEA-------E---------------KDAKLELKPYEAIVLL 542 (543)
T ss_pred cCC-cEEEEEEECCCCCeEeeCCccCc-CceEEEecCCCc-------C---------------CCCcEEECCceEEEEe
Confidence 875 89999999999999999986432 456565442211 0 0156899999999974
No 23
>TIGR02456 treS_nterm trehalose synthase. Trehalose synthase interconverts maltose and alpha, alpha-trehalose by transglucosylation. This is one of at least three mechanisms for biosynthesis of trehalose, an important and widespread compatible solute. However, it is not driven by phosphate activation of sugars and its physiological role may tend toward trehalose degradation. This view is accentuated by numerous examples of fusion to a probable maltokinase domain. The sequence region described by this model is found both as the whole of a trehalose synthase and as the N-terminal region of a larger fusion protein that includes trehalose synthase activity. Several of these fused trehalose synthases have a domain homologous to proteins with maltokinase activity from Actinoplanes missouriensis and Streptomyces coelicolor (PubMed:15378530).
Probab=100.00 E-value=2.3e-57 Score=523.96 Aligned_cols=458 Identities=21% Similarity=0.274 Sum_probs=294.1
Q ss_pred CCCCeEEEEEeccCcccCCCCCCCCCcCHHHHHhhhHHHHHcCCCeEEECcccccCccCcccCCCCCCCcccCCCCC--C
Q 003901 235 PQRDLIIYEVHVRGFTRHESSKTEHPGTYLGVVEKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYNYSSAGI--R 312 (788)
Q Consensus 235 ~~~~~viYei~v~~Ft~~~~s~~~~~G~~~gl~~~L~yLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~wgY~~~~~--~ 312 (788)
+++++|||||+|++|++++. ..+|||+||+++|||||+||||+|||+||++.+. ..+||++.+| +
T Consensus 2 W~~~~viYqi~~~~f~d~~~---~~~Gdl~gi~~~Ldyl~~LGv~~i~L~Pi~~~~~----------~~~gY~~~dy~~v 68 (539)
T TIGR02456 2 WYKDAVFYEVHVRSFFDSNG---DGIGDFPGLTSKLDYLKWLGVDALWLLPFFQSPL----------RDDGYDVSDYRAI 68 (539)
T ss_pred ccccceEEEEehhHhhcCCC---CCccCHHHHHHhHHHHHHCCCCEEEECCCcCCCC----------CCCCCCccccccc
Confidence 46899999999999998653 3479999999999999999999999999998642 1268999988 8
Q ss_pred CCCCCcHHHHHHHHHHHHHcCCEEEEEeeeccccCCCCCCCcccc-CCCCCccceeeCCCC-------------------
Q 003901 313 NCGHDAINEFKLLVREAHKRGIEVVMDVVFNHTVEGNDKGPILSF-RGVDNSVYYMLAPKG------------------- 372 (788)
Q Consensus 313 ~~~~G~~~elk~lV~~aH~~Gi~VilDvV~NH~~~~~~~~~~~~~-~~~~~~~yy~~~~~g------------------- 372 (788)
+|+||+.+|||+||++||++||+||||+|+||++.+++|+..... .....+.||.+.+.+
T Consensus 69 d~~~Gt~~df~~Lv~~ah~~Gi~vilD~V~NH~s~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~ 148 (539)
T TIGR02456 69 LPEFGTIDDFKDFVDEAHARGMRVIIDLVLNHTSDQHPWFQEARSNPDGPYRDFYVWSDTDEKYKDTRIIFVDTEKSNWT 148 (539)
T ss_pred ChhhCCHHHHHHHHHHHHHCCCEEEEEeccCcCCCCCHHHHHHhhCCCCCCCceEEecCCCcccccccccccccCCCCcc
Confidence 999999999999999999999999999999999998865421110 011123444432111
Q ss_pred ------Ccc--cCCCCccccCCCCHHHHHHHHHHHHHHHHhcCccEEEEecccccccCC-----------CccccccccC
Q 003901 373 ------EFY--NYSGCGNTFNCNHPVVRQFIVDCLRYWVTEMHVDGFRFDLASIMTRGS-----------SLWDSVNVYG 433 (788)
Q Consensus 373 ------~~~--~~~g~~~dln~~~p~vr~~i~d~l~~W~~e~gVDGFR~D~a~~l~~~~-----------~~w~~~~~~g 433 (788)
.++ .+....++||+++|+||++|++++++|+ ++||||||||+++++.+.. +||+.
T Consensus 149 ~~~~~~~~y~~~f~~~~pdln~~np~vr~~l~~~~~~w~-~~GvDGfRlDav~~~~~~~~~~~~~~p~~~~f~~~----- 222 (539)
T TIGR02456 149 FDPVAKQYYWHRFFSHQPDLNYDNPAVHDAVHDVMRFWL-DLGVDGFRLDAVPYLYEREGTSCENLPETHEFLKR----- 222 (539)
T ss_pred ccCCcCeeEEecccCCCCccCCCCHHHHHHHHHHHHHHH-HcCCCEEEEecHHhhhccCCCccCCCchHHHHHHH-----
Confidence 111 1234568999999999999999999999 6999999999999885321 12221
Q ss_pred ccccCCccccCCCCCChHHHHHHHcCCccccceeeeeeccCCCc--ccccccCCCCcccccchhHHHHHHHHHhCCCCcH
Q 003901 434 IPIEGDLLTTGTPLRSPPLIDLISNDPILRGVKLIAEAWDTGGL--YQVGIFPHWGIWSEWNGKYRDIVRQFIKGTDGFA 511 (788)
Q Consensus 434 ~~~~~~~~~~g~~~~~~~~~~~i~~~~~~~~~~ligE~w~~~~~--~~~~~~~~~~~~~~~n~~f~~~lr~~~~g~~~~~ 511 (788)
+.+.++. ..|++++|||.|..... ...+.....+++..+|+.+...+...+.. ...
T Consensus 223 ------------------~~~~v~~--~~p~~~~iaE~~~~~~~~~~y~~~~~~~~~d~~f~f~l~~~~~~~l~~--~~~ 280 (539)
T TIGR02456 223 ------------------LRKMVDR--EYPGRMLLAEANQWPEEVVAYFGDEGDPECHMAFNFPVMPRIFMALRR--EDR 280 (539)
T ss_pred ------------------HHHHHHH--hCCCeEEEEEeCCCHHHHHHhhCCCCCCeeeeEEChhhhhhhhccccc--CCH
Confidence 2223322 34689999998532210 00011111135566676665444332221 113
Q ss_pred HHHHHHHhCCCCccCCCCCCCCcceeecccCCCcchhhhhhhccccccc-CCCCCCCCCCCCCCCCcCCCCcchhHHHHH
Q 003901 512 GAFAECLCGSPNLYQGGGRKPWNSINFVCAHDGFSLADLVSYNQKHNLA-NGEDNNDGETHNNSWNCGQEGEFANILVKK 590 (788)
Q Consensus 512 ~~~~~~l~~~~~~~~~~~~~p~~~vnfv~nHD~~rl~d~~~~~~~~n~~-~g~~~~dg~~~~~sw~~g~~~~~~~~~~~~ 590 (788)
..+...+...+. + ......++|++|||+.|+..+......+-.+ .+.+ +...-+.+......+. ..
T Consensus 281 ~~l~~~l~~~~~-~----~~~~~~~~fl~nHD~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~R~~s~--~~ 347 (539)
T TIGR02456 281 SPIIDILKETPD-I----PDSCQWCIFLRNHDELTLEMVTDEERDFMYAAYAPD------PRMRINLGIRRRLAPL--LD 347 (539)
T ss_pred HHHHHHHHHhhh-c----cCCCceeeecCCCCccCccccChhhhhhhhhhccCC------cchhcccchhhhhhhc--cc
Confidence 334444432221 1 1233457799999998742111000000000 0000 0000000000000000 00
Q ss_pred HHHHHHHHHHHHHHhcCCceEEecccccccCCCCCCCCcCCCCCccccccCccc--------------------------
Q 003901 591 LRRRQMRNFFLCLMVSQGVPMISMGDEYGHTKGGNNNTYCHDNDINYFRWDKKE-------------------------- 644 (788)
Q Consensus 591 ~~~~~~r~a~alllt~pGiP~Iy~GdE~G~~~~g~~n~y~~~~~~~~~~W~~~~-------------------------- 644 (788)
...+++++|++++||+||+|+||||||+|+.+... ....+..|.+|+|+...
T Consensus 348 ~~~~~~kla~~~l~tlpG~P~IYYG~EiGm~~~~~--~~~~~~~R~pm~W~~~~~~gfs~~~~~~~~~p~~~~~~~~~~~ 425 (539)
T TIGR02456 348 NDRRRIELLTALLLSLPGSPILYYGDEIGMGDNIW--LGDRNGVRTPMQWSPDRNAGFSSADPGQLFLPPVQDPVYGYQQ 425 (539)
T ss_pred ccHHHHHHHHHHHHhCCCceEEEechhhcCcCCCc--cCCCcCccCCcCcCCCCCCCCCCCCCcccccccccccccccch
Confidence 01356789999999999999999999999975311 11223456788887531
Q ss_pred -------CcchHHHHHHHHHHHHHhhCccCCCCCCCCccceeeccCCCCCCCCCCCCcEEEEEEEcCCCCEEEEEEeCCC
Q 003901 645 -------ESKSDFFRFCCLLTKFRHECESLGLSDFPTADRLQWHGHAPGLPDWSDKSRFVAFTLIDSVKGEIYVAFNASH 717 (788)
Q Consensus 645 -------~~~~~l~~~~r~Li~lRk~~~aL~~g~~~~~~~~~~~~~~~~~~~~~~~~~vlaf~r~~~~~~~i~Vv~N~~~ 717 (788)
..+.++++|||+||+|||++++|+.|++..+ ..+++++++|.|..++ +.++||+|++.
T Consensus 426 ~nv~~q~~~~~sll~~yr~Li~lRk~~~aL~~G~~~~l--------------~~~~~~v~~f~R~~~~-~~vlVv~N~s~ 490 (539)
T TIGR02456 426 VNVEAQLRDPSSLLHWTRRVLHVRKAHPAFGRGSLTFL--------------PTGNRRVLAFLREYEG-ERVLCVFNFSR 490 (539)
T ss_pred hhHHHHhhCcccHHHHHHHHHHHHhcCcccccCceEEE--------------ecCCCCEEEEEEEcCC-cEEEEEEeCCC
Confidence 1236799999999999999999999986551 1224579999998875 89999999999
Q ss_pred CcEEEECCCCC--CCCeEEEecCCCCCCCCccCCCCchhhhhhhhcCCCCCCeeEEeeCCeEEEEEe
Q 003901 718 LPVIISLPKRP--GYRWEPLVDTSKPEPFDFLSSDLPAKEIAIKQYAPFLDANLYPMLSYSSIILLL 782 (788)
Q Consensus 718 ~~~~v~Lp~~~--g~~w~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~~vl~~ 782 (788)
++++++|+... |..+.+++.+.... . +. ....+++|+|+++++|-+
T Consensus 491 ~~~~v~l~~~~~~~~~~~dl~~~~~~~-----------~-~~-------~~~~~~~l~p~~~~~~~~ 538 (539)
T TIGR02456 491 NPQAVELDLSEFAGRVPVELIGGAPFP-----------P-VG-------GDGYLLTLGPHGFYWFRL 538 (539)
T ss_pred CCEEeeccccccccCcceecccCCccc-----------c-cc-------CCcceEEECCceEEEEEe
Confidence 99999987642 33455554322100 0 00 123578999999999863
No 24
>PRK09505 malS alpha-amylase; Reviewed
Probab=100.00 E-value=5.5e-55 Score=505.76 Aligned_cols=399 Identities=18% Similarity=0.250 Sum_probs=269.0
Q ss_pred CCCCCCCCeEEEEEeccCcccCCCCCC---------------CCCcCHHHHHhhhHHHHHcCCCeEEECcccccCccC--
Q 003901 231 PLKYPQRDLIIYEVHVRGFTRHESSKT---------------EHPGTYLGVVEKLDHLKDLGINCLELMPCHEFNELE-- 293 (788)
Q Consensus 231 ~~~~~~~~~viYei~v~~Ft~~~~s~~---------------~~~G~~~gl~~~L~yLk~LGvt~I~L~Pi~~~~~~~-- 293 (788)
+....|++++||+|++++|.+++.+++ .++|||+||+++|+|||+||||+|||+||++.....
T Consensus 182 ~~~~~W~~aviYqI~~DRF~nGd~~Nd~~~g~~~d~~~~~~~f~GGdl~Gi~~kLdyl~~LGv~aIwlsPi~~~~~~~~~ 261 (683)
T PRK09505 182 AAPFDWHNATVYFVLTDRFENGDPSNDHSYGRHKDGMQEIGTFHGGDLRGLTEKLDYLQQLGVNALWISSPLEQIHGWVG 261 (683)
T ss_pred CCChhhccCcEEEEehhhhcCCCcccccccCcCCCCccccCcccCCCHHHHHHhhHHHHHcCCCEEEeCccccccccccc
Confidence 344568899999999999999886543 247999999999999999999999999999864221
Q ss_pred --cccCCCCCCCcccCCCCC--CCCCCCcHHHHHHHHHHHHHcCCEEEEEeeeccccCCCC-CCCccccC----------
Q 003901 294 --YFSYNSVLGDYNYSSAGI--RNCGHDAINEFKLLVREAHKRGIEVVMDVVFNHTVEGND-KGPILSFR---------- 358 (788)
Q Consensus 294 --~~~~~~~~~~wgY~~~~~--~~~~~G~~~elk~lV~~aH~~Gi~VilDvV~NH~~~~~~-~~~~~~~~---------- 358 (788)
..+..+.+.|+||.+.++ +++++|+.+|||+||++||++||+||||+|+||++..+. +...+.|.
T Consensus 262 ~g~~g~~~~~~yhgY~~~D~~~id~~~Gt~~dfk~Lv~~aH~~Gi~VilD~V~NH~~~~~~~d~~~~~f~~~~~~~~~~~ 341 (683)
T PRK09505 262 GGTKGDFPHYAYHGYYTLDWTKLDANMGTEADLRTLVDEAHQRGIRILFDVVMNHTGYATLADMQEFQFGALYLSGDENK 341 (683)
T ss_pred cccccCCCcCCCCCCCccccccCCCCCCCHHHHHHHHHHHHHCCCEEEEEECcCCCcccccccccccchhhhhhhccccc
Confidence 111112356789999988 899999999999999999999999999999999985321 00000000
Q ss_pred CCCCccceeeC-----------------CCCCcccCCC------------------------CccccCCC----------
Q 003901 359 GVDNSVYYMLA-----------------PKGEFYNYSG------------------------CGNTFNCN---------- 387 (788)
Q Consensus 359 ~~~~~~yy~~~-----------------~~g~~~~~~g------------------------~~~dln~~---------- 387 (788)
...+..|+.+. ....+..|+| .-|+||.+
T Consensus 342 ~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~wwg~~w~~~~~~~~~~~~~~~~~~~l~~LPdl~te~~~~~~lp~f 421 (683)
T PRK09505 342 KTLGERWSDWQPAAGQNWHSFNDYINFSDSTAWDKWWGKDWIRTDIGDYDNPGFDDLTMSLAFLPDIKTESTQASGLPVF 421 (683)
T ss_pred cccCcccccccccccccccccccccccCCccccccccccccccccccccccccccccccccccCCcccccCccccccchh
Confidence 00111111111 1111222211 11345554
Q ss_pred -------------CHHHHHHHHHHHHHHHHhcCccEEEEecccccccCCCccccccccCccccCCccccCCCCCChHHHH
Q 003901 388 -------------HPVVRQFIVDCLRYWVTEMHVDGFRFDLASIMTRGSSLWDSVNVYGIPIEGDLLTTGTPLRSPPLID 454 (788)
Q Consensus 388 -------------~p~vr~~i~d~l~~W~~e~gVDGFR~D~a~~l~~~~~~w~~~~~~g~~~~~~~~~~g~~~~~~~~~~ 454 (788)
||.||++|++++++|++++||||||+|++++++. +||..++.-. ...+.
T Consensus 422 ~~~~p~~~~~~~~n~~Vr~yL~~~ik~Wv~e~GIDGfRlDaakhV~~--~FW~~~~~~~----------------~~~l~ 483 (683)
T PRK09505 422 YANKPDTRAKAIDGYTPRDYLTHWLSQWVRDYGIDGFRVDTAKHVEL--PAWQQLKQEA----------------SAALA 483 (683)
T ss_pred hhcCcccccccccCHHHHHHHHHHHHHHHHhcCCCEEEEechHhCCH--HHHHHHHHHH----------------HHHHH
Confidence 5699999999999999999999999999999975 6887632100 00011
Q ss_pred HHH-cCC----ccccceeeeeeccCCCcccccccCCCCcccccchhHHHHHHHHHhCCCCcHHHHHHHHhCCCCccCCCC
Q 003901 455 LIS-NDP----ILRGVKLIAEAWDTGGLYQVGIFPHWGIWSEWNGKYRDIVRQFIKGTDGFAGAFAECLCGSPNLYQGGG 529 (788)
Q Consensus 455 ~i~-~~~----~~~~~~ligE~w~~~~~~~~~~~~~~~~~~~~n~~f~~~lr~~~~g~~~~~~~~~~~l~~~~~~~~~~~ 529 (788)
..+ ..| ..++++++||.|..+... ...+. .++++.+|+.|...+....... ..+..........
T Consensus 484 ~~k~~~~d~~~~~~~~~~vGEvw~~~~~~-~~y~~-~~fDsv~NF~~~~~~~~~~~~~----~~l~~~~~~~~~~----- 552 (683)
T PRK09505 484 EWKKANPDKALDDAPFWMTGEAWGHGVMK-SDYYR-HGFDAMINFDYQEQAAKAVDCL----AQMDPTYQQMAEK----- 552 (683)
T ss_pred HHHHhccccccccCCeEEEEEecCCchhh-HHHHh-hcCccccCchHHHHHHHHHHHH----HHHHHHHHHHhhh-----
Confidence 111 111 123589999999654211 11111 2578889998887765443311 1111111110000
Q ss_pred CCCCcceeecccCCCcchhhhhhhcccccccCCCCCCCCCCCCCCCCcCCCCcchhHHHHHHHHHHHHHHHHHHHhcCCc
Q 003901 530 RKPWNSINFVCAHDGFSLADLVSYNQKHNLANGEDNNDGETHNNSWNCGQEGEFANILVKKLRRRQMRNFFLCLMVSQGV 609 (788)
Q Consensus 530 ~~p~~~vnfv~nHD~~rl~d~~~~~~~~n~~~g~~~~dg~~~~~sw~~g~~~~~~~~~~~~~~~~~~r~a~alllt~pGi 609 (788)
......++|++|||+.|+.+... . ..++|+|++++||+||+
T Consensus 553 ~~~~~~l~FLdNHDt~Rf~s~~~--------------------------~-------------~~~~klAaall~tlpGi 593 (683)
T PRK09505 553 LQDFNVLSYLSSHDTRLFFEGGQ--------------------------S-------------YAKQRRAAELLLLAPGA 593 (683)
T ss_pred cCccceeecccCCChhhhhhhcC--------------------------c-------------hHHHHHHHHHHHhCCCC
Confidence 12235689999999998765431 0 13467899999999999
Q ss_pred eEEecccccccCCCCC-CCCcCCCCCccccccCcccCcchHHHHHHHHHHHHHhhCccCCCCCCCCccceeeccCCCCCC
Q 003901 610 PMISMGDEYGHTKGGN-NNTYCHDNDINYFRWDKKEESKSDFFRFCCLLTKFRHECESLGLSDFPTADRLQWHGHAPGLP 688 (788)
Q Consensus 610 P~Iy~GdE~G~~~~g~-~n~y~~~~~~~~~~W~~~~~~~~~l~~~~r~Li~lRk~~~aL~~g~~~~~~~~~~~~~~~~~~ 688 (788)
|+||||||+|++.... .++ ..+.|.+|+|+.......++++|+|+|++||++||+|+.|++..+
T Consensus 594 P~IYYGdEiGm~gg~~g~DP--~~~~R~~M~W~~~~~~~~~Ll~~~kkLi~LRk~~pAL~~G~~~~l------------- 658 (683)
T PRK09505 594 VQIYYGDESARPFGPTGSDP--LQGTRSDMNWQEVSGKSAALLAHWQKLGQFRARHPAIGAGKQTTL------------- 658 (683)
T ss_pred cEEEechhhCccCCCCCCCC--cccccccCCccccccchHHHHHHHHHHHHHHhhCHHhhCCceEEe-------------
Confidence 9999999999975321 111 123678899986444447899999999999999999999986541
Q ss_pred CCCCCCcEEEEEEEcCCCCEEEEEEeCC
Q 003901 689 DWSDKSRFVAFTLIDSVKGEIYVAFNAS 716 (788)
Q Consensus 689 ~~~~~~~vlaf~r~~~~~~~i~Vv~N~~ 716 (788)
..+++++|.|..++ +.++||+|..
T Consensus 659 ---~~~~~~aF~R~~~~-d~vlVv~~~~ 682 (683)
T PRK09505 659 ---SLKQYYAFVREHGD-DKVMVVWAGQ 682 (683)
T ss_pred ---ccCCEEEEEEEeCC-CEEEEEEeCC
Confidence 13579999998876 8999999864
No 25
>PRK09441 cytoplasmic alpha-amylase; Reviewed
Probab=100.00 E-value=3e-49 Score=451.05 Aligned_cols=387 Identities=16% Similarity=0.210 Sum_probs=254.0
Q ss_pred cCHHHHHhhhHHHHHcCCCeEEECcccccCccCcccCCCCCCCcccCCCCC-----------CCCCCCcHHHHHHHHHHH
Q 003901 261 GTYLGVVEKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYNYSSAGI-----------RNCGHDAINEFKLLVREA 329 (788)
Q Consensus 261 G~~~gl~~~L~yLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~wgY~~~~~-----------~~~~~G~~~elk~lV~~a 329 (788)
.+|++|+++||||++||||+|||+||+++.+.. .++||++.++ ++|+|||.+|||+||++|
T Consensus 19 ~~~~~I~~kldyl~~LGvtaIwl~P~~~~~~~~--------~~hgY~~~D~~~~~~~~~~~~id~~fGt~~dl~~Li~~~ 90 (479)
T PRK09441 19 KLWNRLAERAPELAEAGITAVWLPPAYKGTSGG--------YDVGYGVYDLFDLGEFDQKGTVRTKYGTKEELLNAIDAL 90 (479)
T ss_pred cHHHHHHHHHHHHHHcCCCEEEeCCCccCCCCC--------CCCCCCeecccccccccccCCcCcCcCCHHHHHHHHHHH
Confidence 467799999999999999999999999975311 1245555544 589999999999999999
Q ss_pred HHcCCEEEEEeeeccccCCC--CCCC---------------c---ccc-----CCCCC------ccceeeCCC-------
Q 003901 330 HKRGIEVVMDVVFNHTVEGN--DKGP---------------I---LSF-----RGVDN------SVYYMLAPK------- 371 (788)
Q Consensus 330 H~~Gi~VilDvV~NH~~~~~--~~~~---------------~---~~~-----~~~~~------~~yy~~~~~------- 371 (788)
|++||+||+|+|+||++.++ ++++ . ..+ .+.+. ..|+.+.+.
T Consensus 91 H~~Gi~vi~D~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (479)
T PRK09441 91 HENGIKVYADVVLNHKAGADEKETFRVVEVDPDDRTQIISEPYEIEGWTRFTFPGRGGKYSDFKWHWYHFSGTDYDENPD 170 (479)
T ss_pred HHCCCEEEEEECcccccCCCcceeeeeeeeCccccccccCCceeecccccccCCCCCCcCCcceeCCcCCCCcccccccC
Confidence 99999999999999998543 2221 0 000 00000 012222110
Q ss_pred --CCc------ccCCC------------CccccCCCCHHHHHHHHHHHHHHHHhcCccEEEEecccccccCCCccccccc
Q 003901 372 --GEF------YNYSG------------CGNTFNCNHPVVRQFIVDCLRYWVTEMHVDGFRFDLASIMTRGSSLWDSVNV 431 (788)
Q Consensus 372 --g~~------~~~~g------------~~~dln~~~p~vr~~i~d~l~~W~~e~gVDGFR~D~a~~l~~~~~~w~~~~~ 431 (788)
+.+ ..|.+ ..+|||+++|+|+++|++++++|++++||||||+|+++++.. .||..
T Consensus 171 ~~~~~~~~~~~~~w~~~~~~~~~~~~~~~lpDLn~~np~V~~~l~~~~~~w~~~~giDGfRlDavk~v~~--~f~~~--- 245 (479)
T PRK09441 171 ESGIFKIVGDGKGWDDQVDDENGNFDYLMGADIDFRHPEVREELKYWAKWYMETTGFDGFRLDAVKHIDA--WFIKE--- 245 (479)
T ss_pred cCceEEecCCCCCCccccccccCCcccccccccccCCHHHHHHHHHHHHHHHHhcCCCEEEEhhhcCCCH--HHHHH---
Confidence 000 11211 146999999999999999999999889999999999999975 46654
Q ss_pred cCccccCCccccCCCCCChHHHHHHHcCCccccceeeeeeccCCCcccccccCCC-CcccccchhHHHHHHHHHhCCCCc
Q 003901 432 YGIPIEGDLLTTGTPLRSPPLIDLISNDPILRGVKLIAEAWDTGGLYQVGIFPHW-GIWSEWNGKYRDIVRQFIKGTDGF 510 (788)
Q Consensus 432 ~g~~~~~~~~~~g~~~~~~~~~~~i~~~~~~~~~~ligE~w~~~~~~~~~~~~~~-~~~~~~n~~f~~~lr~~~~g~~~~ 510 (788)
+.+.++.. ..++++++||.|.............. ...+.++..+...++..+.+..
T Consensus 246 --------------------~~~~~~~~-~~~~~~~vGE~~~~~~~~~~~y~~~~~~~~~~~Df~~~~~l~~~~~~~~-- 302 (479)
T PRK09441 246 --------------------WIEHVREV-AGKDLFIVGEYWSHDVDKLQDYLEQVEGKTDLFDVPLHYNFHEASKQGR-- 302 (479)
T ss_pred --------------------HHHHHHHh-cCCCeEEEEeecCCChHHHHHHHHhcCCCceEecHHHHHHHHHHHhcCC--
Confidence 34444321 12478999999975421000000000 1224667777777877776422
Q ss_pred HHHHHHHHhCCCCccCCCCCCCCcceeecccCCCcchhhhhhhcccccccCCCCCCCCCCCCCCCCcCCCCcchhHHHHH
Q 003901 511 AGAFAECLCGSPNLYQGGGRKPWNSINFVCAHDGFSLADLVSYNQKHNLANGEDNNDGETHNNSWNCGQEGEFANILVKK 590 (788)
Q Consensus 511 ~~~~~~~l~~~~~~~~~~~~~p~~~vnfv~nHD~~rl~d~~~~~~~~n~~~g~~~~dg~~~~~sw~~g~~~~~~~~~~~~ 590 (788)
...+...+.... .+ ..+..++|||+|||+.|+..+.. .
T Consensus 303 ~~~l~~~~~~~~-~~----~~~~~~~~FldNHD~~R~~~~~~--------------------------~----------- 340 (479)
T PRK09441 303 DYDMRNIFDGTL-VE----ADPFHAVTFVDNHDTQPGQALES--------------------------P----------- 340 (479)
T ss_pred ccchHhhhCcch-hh----cCcccceeeeccccCCCcccccc--------------------------c-----------
Confidence 123333332211 11 35667899999999998754221 0
Q ss_pred HHHHHHHHHHHHHHhcC-CceEEecccccccCCCCCCCCcCCCCCccccccCcccCcchHHHHHHHHHHHHHhhCccCCC
Q 003901 591 LRRRQMRNFFLCLMVSQ-GVPMISMGDEYGHTKGGNNNTYCHDNDINYFRWDKKEESKSDFFRFCCLLTKFRHECESLGL 669 (788)
Q Consensus 591 ~~~~~~r~a~alllt~p-GiP~Iy~GdE~G~~~~g~~n~y~~~~~~~~~~W~~~~~~~~~l~~~~r~Li~lRk~~~aL~~ 669 (788)
...+.+++|+++|||+| |+||||||+|+|+.+... . .++++++++|++|||+++ .
T Consensus 341 ~~~~~~~lA~a~llT~p~GiP~IYYGdE~g~~g~~~--------------------~-~~l~~~i~~Li~lRk~~~---~ 396 (479)
T PRK09441 341 VEPWFKPLAYALILLREEGYPCVFYGDYYGASGYYI--------------------D-MPFKEKLDKLLLARKNFA---Y 396 (479)
T ss_pred ccccchHHHHHHHHhCCCCceeeEeccccCCCCCcc--------------------c-chHHHHHHHHHHHHHHhC---C
Confidence 00112468999999999 999999999999864311 1 568999999999999853 4
Q ss_pred CCCCCccceeeccCCCCCCCCCCCCcEEEEEEEcCCC-CEEEEEEeCCCC-cEEEECCCC-CCCCeEEEecCCCCCCCCc
Q 003901 670 SDFPTADRLQWHGHAPGLPDWSDKSRFVAFTLIDSVK-GEIYVAFNASHL-PVIISLPKR-PGYRWEPLVDTSKPEPFDF 746 (788)
Q Consensus 670 g~~~~~~~~~~~~~~~~~~~~~~~~~vlaf~r~~~~~-~~i~Vv~N~~~~-~~~v~Lp~~-~g~~w~~l~d~~~~~~~~~ 746 (788)
|+... +..++++++|.|...+. +.++||+|.+.. ..++.++.. ++..|+.++...... .
T Consensus 397 G~~~~---------------~~~~~~~~~~~R~~~~~~~~vvvvinn~~~~~~~~~~~~~~~~~~~~d~~~~~~~~---~ 458 (479)
T PRK09441 397 GEQTD---------------YFDHPNCIGWTRSGDEENPGLAVVISNGDAGEKTMEVGENYAGKTWRDYTGNRQET---V 458 (479)
T ss_pred CCeeE---------------eecCCCEEEEEEecCCCCccEEEEEECCCCCcEEEEeCccCCCCEeEhhhCCCCCe---E
Confidence 54432 22457899999987643 468888877653 445777653 355687776432210 1
Q ss_pred cCCCCchhhhhhhhcCCCCCCeeEEeeCCeEEEEE
Q 003901 747 LSSDLPAKEIAIKQYAPFLDANLYPMLSYSSIILL 781 (788)
Q Consensus 747 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~~vl~ 781 (788)
...+ .+..+++|||.|++||+
T Consensus 459 ~~~~--------------~G~~~~~l~~~s~~i~~ 479 (479)
T PRK09441 459 TIDE--------------DGWGTFPVNGGSVSVWV 479 (479)
T ss_pred EECC--------------CCeEEEEECCceEEEeC
Confidence 0000 23468999999999985
No 26
>PLN03244 alpha-amylase; Provisional
Probab=100.00 E-value=9.8e-44 Score=400.99 Aligned_cols=517 Identities=17% Similarity=0.199 Sum_probs=322.7
Q ss_pred CCCCCEEEEEEcCCCCCceeeEEEcCCcCCCCCcccCCcccccCcccceeeecccccCCCCCCCCCCcceecccCCC--C
Q 003901 145 NKTGDVWHVFLKGDFKDMLYGYKFDGKFSPQEGHYFDPTKIVLDPYAKAVISRAQFGVLGPDENCWPQMACLVPTPE--D 222 (788)
Q Consensus 145 ~~~~gvW~~~i~~~~~~~~Y~y~~~g~~~~~~g~~~~~~~~~~DPya~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 222 (788)
...+++|...+|...++..|+..+... +|. .+ -+.+|++.+..+.. +. ...+++..+. .
T Consensus 326 ~~~~~w~~~~~~~i~H~s~~k~~~~~~----~g~-~~----RiPaw~~~~~~~~~-~~---------~~~~~~w~P~~~~ 386 (872)
T PLN03244 326 KGRKAWLKKYIPAIPHGSKYRLYFNTP----DGP-LE----RIPAWATYVLPDDD-GK---------QAFAIHWEPPPEA 386 (872)
T ss_pred cccCceeecccCCCCCCCeEEEEEEcC----CCC-cc----cCCCCeeeEEecCC-CC---------ceeeeEeCCCccc
Confidence 346789999999999999999888632 232 22 14677777754321 10 1233444432 3
Q ss_pred CCCCCCCCCCCCCCCCeEEEEEeccCcccCCCCCCCCCcCHHHHHhhhHHHHHcCCCeEEECcccccCccCcccCCCCCC
Q 003901 223 EFDWEGDLPLKYPQRDLIIYEVHVRGFTRHESSKTEHPGTYLGVVEKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLG 302 (788)
Q Consensus 223 ~~~W~~~~~~~~~~~~~viYei~v~~Ft~~~~s~~~~~G~~~gl~~~L~yLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~ 302 (788)
.|.|+...|.+ ...+.|||.||.-.+ .....|||+.+++++ . +
T Consensus 387 ~y~~k~~~p~~--p~~lrIYE~HvGms~-----~e~kv~ty~eF~~~v----------------t--------------~ 429 (872)
T PLN03244 387 AHKWKNMKPKV--PESLRIYECHVGISG-----SEPKISSFEEFTEKV----------------T--------------N 429 (872)
T ss_pred CCccCCCCCCC--CCCceEEEEEeeecC-----CCCCcccHHHHhhcc----------------C--------------c
Confidence 58899765543 267799999998543 345689999999971 0 1
Q ss_pred CcccCCCCCCCCCCCcHHHHHHHHHHHHHcCCEEEEEeeeccccCCCCCCCccccCCCCCccceeeCCCCCcccCCCCcc
Q 003901 303 DYNYSSAGIRNCGHDAINEFKLLVREAHKRGIEVVMDVVFNHTVEGNDKGPILSFRGVDNSVYYMLAPKGEFYNYSGCGN 382 (788)
Q Consensus 303 ~wgY~~~~~~~~~~G~~~elk~lV~~aH~~Gi~VilDvV~NH~~~~~~~~~~~~~~~~~~~~yy~~~~~g~~~~~~g~~~ 382 (788)
| |+ ++++||+++|||+||++||++||+||||||+||++.+...+ ...+.+ .+..||..++.|.. ..+|+ .
T Consensus 430 f--FA----pssRYGTPeDLK~LVD~aH~~GI~VILDvV~NH~~~d~~~G-L~~fDG-t~~~Yf~~~~~g~~-~~WGs-~ 499 (872)
T PLN03244 430 F--FA----ASSRYGTPDDFKRLVDEAHGLGLLVFLDIVHSYAAADEMVG-LSLFDG-SNDCYFHTGKRGHH-KHWGT-R 499 (872)
T ss_pred c--cc----cCcccCCHHHHHHHHHHHHHCCCEEEEEecCccCCCccccc-hhhcCC-CccceeccCCCCcc-CCCCC-c
Confidence 1 12 46799999999999999999999999999999999865332 223444 23356666655544 34466 6
Q ss_pred ccCCCCHHHHHHHHHHHHHHHHhcCccEEEEecccc-cccCCCccccccccCccccCCccccCCCCCChHHHHHHHc--C
Q 003901 383 TFNCNHPVVRQFIVDCLRYWVTEMHVDGFRFDLASI-MTRGSSLWDSVNVYGIPIEGDLLTTGTPLRSPPLIDLISN--D 459 (788)
Q Consensus 383 dln~~~p~vr~~i~d~l~~W~~e~gVDGFR~D~a~~-l~~~~~~w~~~~~~g~~~~~~~~~~g~~~~~~~~~~~i~~--~ 459 (788)
.+|+.+++|+++|+++++||++||||||||||++.. +..+++. ..+..-+ .+..... .......++..+.. .
T Consensus 500 ~fnyg~~EVr~FLLsna~yWleEyhIDGFRfDaVtSMLY~d~G~-~~f~g~~-~~y~n~~---~d~dAv~fL~laN~~ih 574 (872)
T PLN03244 500 MFKYGDLDVLHFLISNLNWWITEYQIDGFQFHSLASMIYTHNGF-ASFNGDL-DDYCNQY---VDKDALMYLILANEILH 574 (872)
T ss_pred eecCCCHHHHHHHHHHHHHHHHHhCcCcceeecchhheeecccc-ccccCCc-ccccccc---CCchHHHHHHHHHHHHH
Confidence 899999999999999999999999999999998844 4333221 1100000 0000000 01111223433332 2
Q ss_pred CccccceeeeeeccCC-CcccccccCCCCcccccchhHHHHHHHHHhCCCCc---HHHHHHHHhCCCCccCCCCCCCCcc
Q 003901 460 PILRGVKLIAEAWDTG-GLYQVGIFPHWGIWSEWNGKYRDIVRQFIKGTDGF---AGAFAECLCGSPNLYQGGGRKPWNS 535 (788)
Q Consensus 460 ~~~~~~~ligE~w~~~-~~~~~~~~~~~~~~~~~n~~f~~~lr~~~~g~~~~---~~~~~~~l~~~~~~~~~~~~~p~~~ 535 (788)
...|++++|||....- ++...-...+.||+..||..+.+....+++..... .+.+...|..+ .+....+
T Consensus 575 ~~~P~~itIAEDsS~~P~vt~Pv~~GGLGFDYKWnMgwmdd~lkylk~~pderw~~~~ItfsL~~n-------rr~~ek~ 647 (872)
T PLN03244 575 ALHPKIITIAEDATYYPGLCEPTSQGGLGFDYYVNLSAPDMWLDFLDNIPDHEWSMSKIVSTLIAN-------KEYADKM 647 (872)
T ss_pred HhCCCeEEEEEcCCCCcCccccCCCCCCCccceecCcchHHHHHHHHhCCCcccCHHHHhhhhhcc-------cCCcceE
Confidence 2457899999976432 22222223356799999999999888888765432 23333333211 1234578
Q ss_pred eeecccCCCc-----chhhhhhhcccccccCCCCCCCCCCCCCCCCcCCCCcchhHHHHHHHHHHHHHHHHHHHhcCCce
Q 003901 536 INFVCAHDGF-----SLADLVSYNQKHNLANGEDNNDGETHNNSWNCGQEGEFANILVKKLRRRQMRNFFLCLMVSQGVP 610 (788)
Q Consensus 536 vnfv~nHD~~-----rl~d~~~~~~~~n~~~g~~~~dg~~~~~sw~~g~~~~~~~~~~~~~~~~~~r~a~alllt~pGiP 610 (788)
|+|.+|||.. |+...+. +... .+..+. +..+.+ ..+..|++-+++++++|.|
T Consensus 648 ~aYsESHDqaLvGdKTlaf~l~---------d~~~--------y~~~~~-----~~vv~R-g~aLhKMiRllt~~~~G~k 704 (872)
T PLN03244 648 LSYAENHNQSISGGRSFAEILF---------GAID--------EDPLGG-----KELLDR-GCSLHKMIRLITFTIGGHA 704 (872)
T ss_pred EEEecccceeccccchHHhhhc---------cccc--------cccccc-----chhhhh-hhHHHHHHHHHHHHccCcc
Confidence 9999999983 2222221 0000 011100 011111 1113344445678899988
Q ss_pred -EEecccccccCC------CCCCCCcCCCCCccccccCcccC-cchHHHHHHHHHHHHHhhCccCCCCCCCCccceeecc
Q 003901 611 -MISMGDEYGHTK------GGNNNTYCHDNDINYFRWDKKEE-SKSDFFRFCCLLTKFRHECESLGLSDFPTADRLQWHG 682 (788)
Q Consensus 611 -~Iy~GdE~G~~~------~g~~n~y~~~~~~~~~~W~~~~~-~~~~l~~~~r~Li~lRk~~~aL~~g~~~~~~~~~~~~ 682 (788)
++|||+|||+.. .||+.+|. ...++|+..+. ..+.|.+|+|.|++|++++++|..+... +
T Consensus 705 kLnFMGNEFGhpe~~dfPr~gN~~s~~----~arrdW~Lld~~~hk~L~~FdrdLn~Ly~~~~aL~~gf~w----I---- 772 (872)
T PLN03244 705 YLNFMGNEFGHPERIEFPMPSNNFSFS----LANRCWDLLENEVHHHLFSFDKDLMDLDENEGILSRGLPN----I---- 772 (872)
T ss_pred ceeecccccCCchheeccccCCCcccc----ccccCccccCChhHHHHHHHHHHHHHHHhcCcccccCCcE----E----
Confidence 799999999965 34555442 23578997653 2378999999999999999999754211 1
Q ss_pred CCCCCCCCCCCCcEEEEEEEcCCCCEEEEEEeCCCC-cE-EEECCCCCCCCeEEEecCCCCCCCCccCCCCchhhh--hh
Q 003901 683 HAPGLPDWSDKSRFVAFTLIDSVKGEIYVAFNASHL-PV-IISLPKRPGYRWEPLVDTSKPEPFDFLSSDLPAKEI--AI 758 (788)
Q Consensus 683 ~~~~~~~~~~~~~vlaf~r~~~~~~~i~Vv~N~~~~-~~-~v~Lp~~~g~~w~~l~d~~~~~~~~~~~~~~~~~~~--~~ 758 (788)
..-+++.+|+||.|. .++||+|++.. +. .+.|..+..+.|+++++|......+..........+ ..
T Consensus 773 -----~~~d~e~kVIAF~R~-----~LLfVfNF~P~~sy~dYrIGVp~~G~Y~eILNSD~~~FGG~g~~~~~~~~t~~~~ 842 (872)
T PLN03244 773 -----HHVKDAAMVISFMRG-----PFLFIFNFHPSNSYEGYDVGVEEAGEYQIILNSDETKYGGQGIIEEDHYLQRSIN 842 (872)
T ss_pred -----eeecCCCCEEEEEec-----CEEEEEeCCCCCCccCCEECCCCCCeEEEEEeCChhhhCCCCccCCCceeecccc
Confidence 112456789999995 48999999974 32 333433333599999999877543332211111111 11
Q ss_pred hhcCCCCCCeeEEeeCCeEEEEEecC
Q 003901 759 KQYAPFLDANLYPMLSYSSIILLLSP 784 (788)
Q Consensus 759 ~~~~~~~~~~~~~v~~~s~~vl~~~~ 784 (788)
..+..+..+..+.|||++++||...+
T Consensus 843 ~~~~gr~~sl~l~LPprsavVlk~~~ 868 (872)
T PLN03244 843 KRIDGLRNCLEVFLPSRTAQVYKLSR 868 (872)
T ss_pred cccCCCCceEEEEeCCCEEEEEEEee
Confidence 12345667888999999999997764
No 27
>PLN00196 alpha-amylase; Provisional
Probab=100.00 E-value=6.9e-43 Score=387.64 Aligned_cols=341 Identities=16% Similarity=0.219 Sum_probs=219.1
Q ss_pred CcCHHHHHhhhHHHHHcCCCeEEECcccccCccCcccCCCCCCCcccCCCCC--CC-CCCCcHHHHHHHHHHHHHcCCEE
Q 003901 260 PGTYLGVVEKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYNYSSAGI--RN-CGHDAINEFKLLVREAHKRGIEV 336 (788)
Q Consensus 260 ~G~~~gl~~~L~yLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~wgY~~~~~--~~-~~~G~~~elk~lV~~aH~~Gi~V 336 (788)
+|+|++|+++|+|||+||||+|||+|+++.. +++||++.++ ++ ++||+.+|||+||++||++||+|
T Consensus 40 gg~~~~i~~kldyL~~LGvtaIWL~P~~~s~-----------s~hGY~~~D~y~ld~~~fGt~~elk~Lv~~aH~~GIkV 108 (428)
T PLN00196 40 GGWYNFLMGKVDDIAAAGITHVWLPPPSHSV-----------SEQGYMPGRLYDLDASKYGNEAQLKSLIEAFHGKGVQV 108 (428)
T ss_pred CcCHHHHHHHHHHHHHcCCCEEEeCCCCCCC-----------CCCCCCccccCCCCcccCCCHHHHHHHHHHHHHCCCEE
Confidence 6899999999999999999999999999743 2357777765 66 59999999999999999999999
Q ss_pred EEEeeeccccCCCCCC--CccccCCCC---Cccceee---C-------CCCCcccCC--CCccccCCCCHHHHHHHHHHH
Q 003901 337 VMDVVFNHTVEGNDKG--PILSFRGVD---NSVYYML---A-------PKGEFYNYS--GCGNTFNCNHPVVRQFIVDCL 399 (788)
Q Consensus 337 ilDvV~NH~~~~~~~~--~~~~~~~~~---~~~yy~~---~-------~~g~~~~~~--g~~~dln~~~p~vr~~i~d~l 399 (788)
|+|+|+||++.++... .+..+.+.. ...|+.+ . ..+.+..+. ...+|||++||+||++|++++
T Consensus 109 ilDvV~NH~~~~~~~~~~~y~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~lpDLn~~np~V~~~l~~~~ 188 (428)
T PLN00196 109 IADIVINHRTAEHKDGRGIYCLFEGGTPDSRLDWGPHMICRDDTQYSDGTGNLDTGADFAAAPDIDHLNKRVQRELIGWL 188 (428)
T ss_pred EEEECccCcccccccCCCceEECCCCCCCCccccccccCCCCcccccCCCCceeCCCCCCCCCccCCCCHHHHHHHHHHH
Confidence 9999999999765321 111122111 1222211 0 011111111 234799999999999999999
Q ss_pred HHHHHhcCccEEEEecccccccCCCccccccccCccccCCccccCCCCCChHHHHHHHcCCccccceeeeeeccCCCccc
Q 003901 400 RYWVTEMHVDGFRFDLASIMTRGSSLWDSVNVYGIPIEGDLLTTGTPLRSPPLIDLISNDPILRGVKLIAEAWDTGGLYQ 479 (788)
Q Consensus 400 ~~W~~e~gVDGFR~D~a~~l~~~~~~w~~~~~~g~~~~~~~~~~g~~~~~~~~~~~i~~~~~~~~~~ligE~w~~~~~~~ 479 (788)
++|++++||||||||+++++.. . +++..... .. ..+++||.|+.....+
T Consensus 189 ~wl~~~~GiDG~RlD~ak~~~~--~---------------------------f~~~~v~~-~~-p~f~VGE~W~~~~~~~ 237 (428)
T PLN00196 189 LWLKSDIGFDAWRLDFAKGYSA--E---------------------------VAKVYIDG-TE-PSFAVAEIWTSMAYGG 237 (428)
T ss_pred HHHhhCCCCCEEEeehhhhCCH--H---------------------------HHHHHHHc-cC-CcEEEEEEeccccccc
Confidence 9888889999999999999864 1 22221111 12 3689999997521100
Q ss_pred ccccCC---------------CC----cccccchhHHHHHHHHHhCCCCcHHHHHHHHhCCCCccCCCCCCCCcceeecc
Q 003901 480 VGIFPH---------------WG----IWSEWNGKYRDIVRQFIKGTDGFAGAFAECLCGSPNLYQGGGRKPWNSINFVC 540 (788)
Q Consensus 480 ~~~~~~---------------~~----~~~~~n~~f~~~lr~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~p~~~vnfv~ 540 (788)
.+.... .+ ..+.++......+..++.+. .. .+.......+.+ ....|..+||||+
T Consensus 238 ~~~~~~~~~~~r~~l~~~l~~~g~~~~~~~~fDF~~~~~~~~~~~~~--~~-~l~~~~~~~~~~---~~~~P~~aVtFvd 311 (428)
T PLN00196 238 DGKPEYDQNAHRQELVNWVDRVGGAASPATVFDFTTKGILNVAVEGE--LW-RLRGADGKAPGV---IGWWPAKAVTFVD 311 (428)
T ss_pred cCCccccchhhHHHHHHHHHhcCCccCcceeecccchHHHHHHhcCC--ch-hhhhhcccCcch---hhcChhhceeecc
Confidence 000000 00 01122222222222233221 00 000000001111 1246778999999
Q ss_pred cCCCcchhhhhhhcccccccCCCCCCCCCCCCCCCCcCCCCcchhHHHHHHHHHHHHHHHHHHHhcCCceEEeccccccc
Q 003901 541 AHDGFSLADLVSYNQKHNLANGEDNNDGETHNNSWNCGQEGEFANILVKKLRRRQMRNFFLCLMVSQGVPMISMGDEYGH 620 (788)
Q Consensus 541 nHD~~rl~d~~~~~~~~n~~~g~~~~dg~~~~~sw~~g~~~~~~~~~~~~~~~~~~r~a~alllt~pGiP~Iy~GdE~G~ 620 (788)
|||+.|+..+... ...++++|+|++||+||+||||||+=
T Consensus 312 NHDT~r~~~~~~~--------------------------------------~~~~~~lAyA~iLT~pG~P~IyYg~~--- 350 (428)
T PLN00196 312 NHDTGSTQHMWPF--------------------------------------PSDKVMQGYAYILTHPGNPCIFYDHF--- 350 (428)
T ss_pred CCCCccccccCCC--------------------------------------ccchHHHHHHHHHcCCCcceEeeCCC---
Confidence 9999986443210 02235789999999999999999942
Q ss_pred CCCCCCCCcCCCCCccccccCcccCcchHHHHHHHHHHHHHhhCccCCCCCCCCccceeeccCCCCCCCCCCCCcEEEEE
Q 003901 621 TKGGNNNTYCHDNDINYFRWDKKEESKSDFFRFCCLLTKFRHECESLGLSDFPTADRLQWHGHAPGLPDWSDKSRFVAFT 700 (788)
Q Consensus 621 ~~~g~~n~y~~~~~~~~~~W~~~~~~~~~l~~~~r~Li~lRk~~~aL~~g~~~~~~~~~~~~~~~~~~~~~~~~~vlaf~ 700 (788)
++|. +.+++++|+++||++++|+.|++.. ...++.++++.
T Consensus 351 -----------------~~~~--------~~~~i~~Li~~Rk~~~~~~~g~~~~---------------~~a~~d~yv~~ 390 (428)
T PLN00196 351 -----------------FDWG--------LKEEIAALVSIRNRNGITPTSELRI---------------MEADADLYLAE 390 (428)
T ss_pred -----------------cCcc--------HHHHHHHHHHHHHhCCCcCCccEEE---------------EEecCCEEEEE
Confidence 3452 3468999999999999999998755 12356799999
Q ss_pred EEcCCCCEEEEEEeCCCCcEEEECCCCCCCCeEEEecC
Q 003901 701 LIDSVKGEIYVAFNASHLPVIISLPKRPGYRWEPLVDT 738 (788)
Q Consensus 701 r~~~~~~~i~Vv~N~~~~~~~v~Lp~~~g~~w~~l~d~ 738 (788)
|. +.++|.+|..-..-.. +|. .|+.++.+
T Consensus 391 ~~----~~~~~~i~~~~~~~~~-~~~----~~~~~~~g 419 (428)
T PLN00196 391 ID----GKVIVKIGSRYDVSHL-IPE----GFQVVAHG 419 (428)
T ss_pred EC----CEEEEEECCCCCcccc-Ccc----cceEEEec
Confidence 92 6899999986322111 132 47776654
No 28
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=100.00 E-value=1.3e-43 Score=383.70 Aligned_cols=283 Identities=30% Similarity=0.489 Sum_probs=192.6
Q ss_pred cCHHHHHhhhHHHHHcCCCeEEECcccccCccCcccCCCCCCCcccCCCCC--CCCCCCcHHHHHHHHHHHHHcCCEEEE
Q 003901 261 GTYLGVVEKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYNYSSAGI--RNCGHDAINEFKLLVREAHKRGIEVVM 338 (788)
Q Consensus 261 G~~~gl~~~L~yLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~wgY~~~~~--~~~~~G~~~elk~lV~~aH~~Gi~Vil 338 (788)
|||+||+++|||||+||||+|||+||++.+ ..+|||++.+| ++++|||.+|||+||++||++||+|||
T Consensus 1 Gd~~gi~~kLdyl~~lGv~~I~l~Pi~~~~----------~~~~gY~~~d~~~vd~~~Gt~~d~~~Lv~~~h~~gi~Vil 70 (316)
T PF00128_consen 1 GDFRGIIDKLDYLKDLGVNAIWLSPIFESP----------NGYHGYDPSDYYAVDPRFGTMEDFKELVDAAHKRGIKVIL 70 (316)
T ss_dssp SSHHHHHHTHHHHHHHTESEEEESS-EESS----------SSTTTTSESEEEEESTTTBHHHHHHHHHHHHHHTTCEEEE
T ss_pred CCHHHHHHhhHHHHHcCCCceecccccccc----------cccccccceeeeccccccchhhhhhhhhhccccccceEEE
Confidence 899999999999999999999999999942 25589999998 899999999999999999999999999
Q ss_pred EeeeccccCCCCCCCc-cccCCCCCccceeeCC-----CCCc---------c--------cCCCCccccCCCCHHHHHHH
Q 003901 339 DVVFNHTVEGNDKGPI-LSFRGVDNSVYYMLAP-----KGEF---------Y--------NYSGCGNTFNCNHPVVRQFI 395 (788)
Q Consensus 339 DvV~NH~~~~~~~~~~-~~~~~~~~~~yy~~~~-----~g~~---------~--------~~~g~~~dln~~~p~vr~~i 395 (788)
|+|+||++..++++.. ....+.....||.+.+ ++.+ . .+....++||+++|+||++|
T Consensus 71 D~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~n~~v~~~i 150 (316)
T PF00128_consen 71 DVVPNHTSDDHPWFQDSLNYFDNPYSDYYYWRDGEGSPPGNWYSYFGGSNWEYDDWGDEYQFWSDLPDLNYENPEVREYI 150 (316)
T ss_dssp EEETSEEETTSHHHHHHHTHTTSTTGTTBEEESBTSTTSSTBBCSTTTSSEESCHHTHCHSSSTTSEEBETTSHHHHHHH
T ss_pred eeeccccccccccccccccccccccccceeecccccccccccccccccccccccccccccccccccchhhhhhhhhhhhh
Confidence 9999999998865211 1111112344444321 1111 1 12233479999999999999
Q ss_pred HHHHHHHHHhcCccEEEEecccccccCCCccccccccCccccCCccccCCCCCChHHHHHHHcCCccccceeeeeeccCC
Q 003901 396 VDCLRYWVTEMHVDGFRFDLASIMTRGSSLWDSVNVYGIPIEGDLLTTGTPLRSPPLIDLISNDPILRGVKLIAEAWDTG 475 (788)
Q Consensus 396 ~d~l~~W~~e~gVDGFR~D~a~~l~~~~~~w~~~~~~g~~~~~~~~~~g~~~~~~~~~~~i~~~~~~~~~~ligE~w~~~ 475 (788)
++++++|+ ++||||||||+++++.. ++|+. +...+... .++++++||.|...
T Consensus 151 ~~~~~~w~-~~giDGfR~D~~~~~~~--~~~~~-----------------------~~~~~~~~--~~~~~~i~E~~~~~ 202 (316)
T PF00128_consen 151 IDVLKFWI-EEGIDGFRLDAAKHIPK--EFWKE-----------------------FRDEVKEE--KPDFFLIGEVWGGD 202 (316)
T ss_dssp HHHHHHHH-HTTESEEEETTGGGSSH--HHHHH-----------------------HHHHHHHH--HTTSEEEEEESSSS
T ss_pred cccccchh-hceEeEEEEccccccch--hhHHH-----------------------Hhhhhhhh--ccccceeeeeccCC
Confidence 99999999 67799999999999975 44444 33344331 25889999999764
Q ss_pred Cc-ccccc-cCCCCcccccchhHHHHHHHH---HhCCCCcHHHHHHHHhCCCCccCCCCCCCCcceeecccCCCcchhhh
Q 003901 476 GL-YQVGI-FPHWGIWSEWNGKYRDIVRQF---IKGTDGFAGAFAECLCGSPNLYQGGGRKPWNSINFVCAHDGFSLADL 550 (788)
Q Consensus 476 ~~-~~~~~-~~~~~~~~~~n~~f~~~lr~~---~~g~~~~~~~~~~~l~~~~~~~~~~~~~p~~~vnfv~nHD~~rl~d~ 550 (788)
.. ..... ..........+.......... ..........+...+......+ ..+...++|++|||+.|+.+.
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~f~~nHD~~r~~~~ 278 (316)
T PF00128_consen 203 NEDLRQYAYDGYFDLDSVFDFPDYGLRSSFFDFWRHGDGDASDLANWLSSWQSSY----PDPYRAVNFLENHDTPRFASR 278 (316)
T ss_dssp HHHHHHHHHHGTTSHSEEEHHHHHHHHHHHHHHHTTTSSHHHHHHHHHHHHHHHS----TTGGGEEEESSHTTSSTHHHH
T ss_pred ccccchhhhccccccchhhcccccccccchhhhhccccchhhhhhhhhhhhhhhh----cccceeeecccccccccchhh
Confidence 21 00000 001111111222222222222 2233323344444433221111 124578999999999997765
Q ss_pred hhhcccccccCCCCCCCCCCCCCCCCcCCCCcchhHHHHHHHHHHHHHHHHHHHhcCCceEEecccccccCCC
Q 003901 551 VSYNQKHNLANGEDNNDGETHNNSWNCGQEGEFANILVKKLRRRQMRNFFLCLMVSQGVPMISMGDEYGHTKG 623 (788)
Q Consensus 551 ~~~~~~~n~~~g~~~~dg~~~~~sw~~g~~~~~~~~~~~~~~~~~~r~a~alllt~pGiP~Iy~GdE~G~~~~ 623 (788)
+.. ...++++|++++||+||+||||||||+|+++.
T Consensus 279 ~~~--------------------------------------~~~~~~~a~~~ll~~pG~P~iy~G~E~g~~~~ 313 (316)
T PF00128_consen 279 FGN--------------------------------------NRDRLKLALAFLLTSPGIPMIYYGDEIGMTGS 313 (316)
T ss_dssp TTT--------------------------------------HHHHHHHHHHHHHHSSSEEEEETTGGGTBBTS
T ss_pred hcc--------------------------------------cchHHHHHHHHHHcCCCccEEEeChhccCCCC
Confidence 421 12267889999999999999999999999854
No 29
>PLN02361 alpha-amylase
Probab=100.00 E-value=1.7e-40 Score=364.00 Aligned_cols=300 Identities=16% Similarity=0.234 Sum_probs=200.3
Q ss_pred CHHHHHhhhHHHHHcCCCeEEECcccccCccCcccCCCCCCCcccCCCCC--CCCCCCcHHHHHHHHHHHHHcCCEEEEE
Q 003901 262 TYLGVVEKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYNYSSAGI--RNCGHDAINEFKLLVREAHKRGIEVVMD 339 (788)
Q Consensus 262 ~~~gl~~~L~yLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~wgY~~~~~--~~~~~G~~~elk~lV~~aH~~Gi~VilD 339 (788)
-|++|+++|+||++||||+|||+|++++.+ ++||.+.++ ++++||+.+|||+||++||++||+||+|
T Consensus 27 ~w~~i~~kl~~l~~lG~t~iwl~P~~~~~~-----------~~GY~~~d~y~~~~~~Gt~~el~~li~~~h~~gi~vi~D 95 (401)
T PLN02361 27 WWRNLEGKVPDLAKSGFTSAWLPPPSQSLA-----------PEGYLPQNLYSLNSAYGSEHLLKSLLRKMKQYNVRAMAD 95 (401)
T ss_pred HHHHHHHHHHHHHHcCCCEEEeCCCCcCCC-----------CCCCCcccccccCcccCCHHHHHHHHHHHHHcCCEEEEE
Confidence 589999999999999999999999998532 257888876 8999999999999999999999999999
Q ss_pred eeeccccCCCCC--CCccccCCC----CCccceeeCCCCC--cc--cCCCCccccCCCCHHHHHHHHHHHHHHHHhcCcc
Q 003901 340 VVFNHTVEGNDK--GPILSFRGV----DNSVYYMLAPKGE--FY--NYSGCGNTFNCNHPVVRQFIVDCLRYWVTEMHVD 409 (788)
Q Consensus 340 vV~NH~~~~~~~--~~~~~~~~~----~~~~yy~~~~~g~--~~--~~~g~~~dln~~~p~vr~~i~d~l~~W~~e~gVD 409 (788)
+|+||++..... +.+..+.+. ++..++. ...|. .. ......+|||++||.||++|++++++|++++|||
T Consensus 96 ~V~NH~~g~~~~~~~~y~~~~g~~~~wd~~~~~~-~~~g~~~~~~~~~~~~lpDLd~~np~Vr~~l~~~~~wl~~~~GiD 174 (401)
T PLN02361 96 IVINHRVGTTQGHGGMYNRYDGIPLPWDEHAVTS-CTGGLGNRSTGDNFNGVPNIDHTQHFVRKDIIGWLIWLRNDVGFQ 174 (401)
T ss_pred EccccccCCCCCCCCCcccCCCCcCCCCcccccc-ccCCCCCccCCCCCccCCccCCCCHHHHHHHHHHHHHHHhcCCCC
Confidence 999999542211 111112221 1111111 01111 11 1112248999999999999999998777679999
Q ss_pred EEEEecccccccCCCccccccccCccccCCccccCCCCCChHHHHHHHcCCccccceeeeeeccCCCccccc--------
Q 003901 410 GFRFDLASIMTRGSSLWDSVNVYGIPIEGDLLTTGTPLRSPPLIDLISNDPILRGVKLIAEAWDTGGLYQVG-------- 481 (788)
Q Consensus 410 GFR~D~a~~l~~~~~~w~~~~~~g~~~~~~~~~~g~~~~~~~~~~~i~~~~~~~~~~ligE~w~~~~~~~~~-------- 481 (788)
|||+|++++++. +||.. +++. .. ..+++||.|+........
T Consensus 175 GfRlDavk~~~~--~f~~~-----------------------~~~~-----~~-p~f~VGE~w~~~~~~~~d~~~~y~~~ 223 (401)
T PLN02361 175 DFRFDFAKGYSA--KFVKE-----------------------YIEA-----AK-PLFSVGEYWDSCNYSGPDYRLDYNQD 223 (401)
T ss_pred EEEEeccccCCH--HHHHH-----------------------HHHh-----hC-CeEEEEEEecCCCcCCcccccchhhh
Confidence 999999999974 45543 2222 11 368999999763110000
Q ss_pred --------ccCCC-CcccccchhHHHHHHHHHhCCCCcHHHHHHHHhCCCCccCCCCCCCCcceeecccCCCcchhhhhh
Q 003901 482 --------IFPHW-GIWSEWNGKYRDIVRQFIKGTDGFAGAFAECLCGSPNLYQGGGRKPWNSINFVCAHDGFSLADLVS 552 (788)
Q Consensus 482 --------~~~~~-~~~~~~n~~f~~~lr~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~p~~~vnfv~nHD~~rl~d~~~ 552 (788)
-.... +..+.++.++...+++.+.++ ...+...+...+.+. +..|..+||||+|||+.|+..+..
T Consensus 224 ~~~~~l~~~~~~~~~~~~~fDF~l~~~l~~a~~~~---~~~l~~~~~~~~~~~---~~~p~~aVTFvdNHDt~r~~~~~~ 297 (401)
T PLN02361 224 SHRQRIVNWIDGTGGLSAAFDFTTKGILQEAVKGQ---WWRLRDAQGKPPGVM---GWWPSRAVTFIDNHDTGSTQAHWP 297 (401)
T ss_pred hHHHHHHHHHHhcCCcceeecHHHHHHHHHHHhhh---HHHHhhhhcCCcchh---hcChhhceEecccCcCcchhhccC
Confidence 00001 122344555555555555321 112222221112221 246788999999999987543210
Q ss_pred hcccccccCCCCCCCCCCCCCCCCcCCCCcchhHHHHHHHHHHHHHHHHHHHhcCCceEEecccccccCCCCCCCCcCCC
Q 003901 553 YNQKHNLANGEDNNDGETHNNSWNCGQEGEFANILVKKLRRRQMRNFFLCLMVSQGVPMISMGDEYGHTKGGNNNTYCHD 632 (788)
Q Consensus 553 ~~~~~n~~~g~~~~dg~~~~~sw~~g~~~~~~~~~~~~~~~~~~r~a~alllt~pGiP~Iy~GdE~G~~~~g~~n~y~~~ 632 (788)
....++++|+|++||.||+||||||+=
T Consensus 298 --------------------------------------~~~~~~~~AyA~iLT~pG~P~Vyyg~~--------------- 324 (401)
T PLN02361 298 --------------------------------------FPSDHIMEGYAYILTHPGIPTVFYDHF--------------- 324 (401)
T ss_pred --------------------------------------CchHHHHHHHHHHHCCCCcCeEeeccc---------------
Confidence 013456779999999999999999872
Q ss_pred CCccccccCcccCcchHHHHHHHHHHHHHhhCccCCCCCCCC
Q 003901 633 NDINYFRWDKKEESKSDFFRFCCLLTKFRHECESLGLSDFPT 674 (788)
Q Consensus 633 ~~~~~~~W~~~~~~~~~l~~~~r~Li~lRk~~~aL~~g~~~~ 674 (788)
++|+ .++.+++++|++|||++++++.+++..
T Consensus 325 -----~~~~------~~~~~~I~~Li~lRk~~~~~~~s~~~i 355 (401)
T PLN02361 325 -----YDWG------GSIHDQIVKLIDIRKRQDIHSRSSIRI 355 (401)
T ss_pred -----cCCC------hHHHHHHHHHHHHHHhCCCCCCCcEEE
Confidence 3444 467899999999999999999887544
No 30
>TIGR03852 sucrose_gtfA sucrose phosphorylase. In the forward direction, this enzyme uses phosphate to cleave sucrose into D-fructose + alpha-D-glucose 1-phosphate. Characterized representatives from Streptococcus mutans and Bifidobacterium adolescentis represent well-separated branches of a molecular phylogenetic tree. In S. mutans, the region including this gene has been associated with neighboring transporter genes and multiple sugar metabolism.
Probab=100.00 E-value=3e-39 Score=357.53 Aligned_cols=386 Identities=13% Similarity=0.141 Sum_probs=248.4
Q ss_pred CCCcCHHHHHhhhHHHHHcCCCeEEECcccccCccCcccCCCCCCCcccCCCCC--CCCCCCcHHHHHHHHHHHHHcCCE
Q 003901 258 EHPGTYLGVVEKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYNYSSAGI--RNCGHDAINEFKLLVREAHKRGIE 335 (788)
Q Consensus 258 ~~~G~~~gl~~~L~yLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~wgY~~~~~--~~~~~G~~~elk~lV~~aH~~Gi~ 335 (788)
...|++.+++++ ||++ ||++|||+|+|++++ ..||++.+| ++|+||+.+||++|+++ |+
T Consensus 14 ~glgdl~g~l~~--yL~~-~v~~i~LlPffps~s-----------D~GYdv~DY~~VDP~~Gt~~Df~~L~~~-----~k 74 (470)
T TIGR03852 14 KNLKELNKVLEN--YFKD-AVGGVHLLPFFPSTG-----------DRGFAPMDYTEVDPAFGDWSDVEALSEK-----YY 74 (470)
T ss_pred CChhhHHHHHHH--HHHH-hCCEEEECCCCcCCC-----------CCCcCchhhceeCcccCCHHHHHHHHHh-----hh
Confidence 346888888877 9999 799999999998642 258999999 99999999999999997 89
Q ss_pred EEEEeeeccccCCCCCCCccccCC--CCCcccee-e----CCC--------------------------C--Cc--ccCC
Q 003901 336 VVMDVVFNHTVEGNDKGPILSFRG--VDNSVYYM-L----APK--------------------------G--EF--YNYS 378 (788)
Q Consensus 336 VilDvV~NH~~~~~~~~~~~~~~~--~~~~~yy~-~----~~~--------------------------g--~~--~~~~ 378 (788)
||+|+|+|||+..|+|+..+.-.+ ....+||. + .+. | ++ ..|+
T Consensus 75 vmlDlV~NHtS~~h~WFq~~~~~~~~s~y~d~fi~~~~~w~~~~~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~w~tF~ 154 (470)
T TIGR03852 75 LMFDFMINHISRQSEYYQDFLEKKDNSKYKDLFIRYKDFWPNGRPTQEDVDLIYKRKDRAPYQEVTFADGSTEKVWNTFG 154 (470)
T ss_pred HHhhhcccccccchHHHHHHHhcCCCCCccceEEecccccCCCCccccccccccCCCCCCCCCceEEcCCCCeEEEccCC
Confidence 999999999999988765432221 23345555 1 100 1 11 1344
Q ss_pred CCccccCCCCHHHHHHHHHHHHHHHHhcCccEEEEecccccccCCCccccccccCccccCCccccCCCCCC-----hHHH
Q 003901 379 GCGNTFNCNHPVVRQFIVDCLRYWVTEMHVDGFRFDLASIMTRGSSLWDSVNVYGIPIEGDLLTTGTPLRS-----PPLI 453 (788)
Q Consensus 379 g~~~dln~~~p~vr~~i~d~l~~W~~e~gVDGFR~D~a~~l~~~~~~w~~~~~~g~~~~~~~~~~g~~~~~-----~~~~ 453 (788)
..++|||+.||.|+++|.+++++|+ +.||||||+||+.++.+. .||.|.. ..++
T Consensus 155 ~~QpDLN~~np~v~e~i~~il~fwl-~~GvdgfRLDAv~~l~K~--------------------~Gt~c~~l~pet~~~l 213 (470)
T TIGR03852 155 EEQIDLDVTSETTKRFIRDNLENLA-EHGASIIRLDAFAYAVKK--------------------LGTNDFFVEPEIWELL 213 (470)
T ss_pred ccccccCCCCHHHHHHHHHHHHHHH-HcCCCEEEEecchhhccc--------------------CCCCcccCChhHHHHH
Confidence 5689999999999999999999999 899999999999999653 2444421 2344
Q ss_pred HHHHcCCccccceeeeeeccCC-CcccccccCCCCcccccchhHHHHHHHHHhCCCCcHHHHHHHHhCCCCccCCCCCCC
Q 003901 454 DLISNDPILRGVKLIAEAWDTG-GLYQVGIFPHWGIWSEWNGKYRDIVRQFIKGTDGFAGAFAECLCGSPNLYQGGGRKP 532 (788)
Q Consensus 454 ~~i~~~~~~~~~~ligE~w~~~-~~~~~~~~~~~~~~~~~n~~f~~~lr~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~p 532 (788)
+.++.--..+++.+|+|++..- ..... +-.+.|++.|.-...-+..-..+....+...+...+
T Consensus 214 ~~~r~~~~~~~~~ll~E~~~~~~~~~~~------gde~~mvY~F~lppl~l~al~~~~~~~l~~wl~~~p---------- 277 (470)
T TIGR03852 214 DEVRDILAPTGAEILPEIHEHYTIQFKI------AEHGYYVYDFALPMLVLYSLYSGKTNRLADWLRKSP---------- 277 (470)
T ss_pred HHHHHHhccCCCEEEeHhhhhccccccc------ccceeEEccCccchhhHHHhhccCHHHHHHHHHhCc----------
Confidence 4444422445899999997421 11111 123445555544444443333345667777776443
Q ss_pred CcceeecccCCCcchhh---hhhhccccc----cc-CCCCCC-------CCCCCCCCCCcCCCCcchhHHHHHHHHHHHH
Q 003901 533 WNSINFVCAHDGFSLAD---LVSYNQKHN----LA-NGEDNN-------DGETHNNSWNCGQEGEFANILVKKLRRRQMR 597 (788)
Q Consensus 533 ~~~vnfv~nHD~~rl~d---~~~~~~~~n----~~-~g~~~~-------dg~~~~~sw~~g~~~~~~~~~~~~~~~~~~r 597 (788)
...+||++|||+..|.+ +++-.+... .. .|.... +|....+.-||.- .+ +... ..++..
T Consensus 278 ~~~~nfL~sHDgigl~~~~glL~~~ei~~l~~~~~~~g~~~s~~~~~~~~~~~~~Y~in~t~----~~-aL~~-~~~r~~ 351 (470)
T TIGR03852 278 MKQFTTLDTHDGIGVVDVKDLLTDEEIDYTSEELYKVGANVKKIYSTAAYNNLDIYQINCTY----YS-ALGD-DDQAYL 351 (470)
T ss_pred ccceEEeecCCCCCCccccccCCHHHHHHHHHHHHhcCCCccccccccccCCcCceeeehhh----HH-HhCC-CHHHHH
Confidence 24479999999998743 221111100 00 111110 1111111111111 00 1111 136788
Q ss_pred HHHHHHHhcCCceEEecccccccCCCC---CCCCcCCCCCccccccCcccCc---chHHHHHHHHHHHHHhhCccCCC-C
Q 003901 598 NFFLCLMVSQGVPMISMGDEYGHTKGG---NNNTYCHDNDINYFRWDKKEES---KSDFFRFCCLLTKFRHECESLGL-S 670 (788)
Q Consensus 598 ~a~alllt~pGiP~Iy~GdE~G~~~~g---~~n~y~~~~~~~~~~W~~~~~~---~~~l~~~~r~Li~lRk~~~aL~~-g 670 (788)
+|.+++|++||||.||||+|+|+.+.- .....+++ +|.-.|+..+-+ ...+.+-+.+||++|+++|||+. |
T Consensus 352 ~a~ai~~~lpGiP~iYy~~llg~~nD~~~~~rt~~~R~--Inr~~~~~~~i~~~l~~~v~~~L~~li~~R~~~~aF~~~g 429 (470)
T TIGR03852 352 LARAIQFFAPGIPQVYYVGLLAGKNDIELLEETKEGRN--INRHYYTLEEIAEEVKRPVVAKLLNLLRFRNTSKAFDLDG 429 (470)
T ss_pred HHHHHHHcCCCCceEEechhhcCCchHHHHHhcCCCCC--CCCCCCCHHHHHHHHhhHHHHHHHHHHHHHhhCcccCCCC
Confidence 899999999999999999999996521 01112233 455555543211 13355555669999999999987 5
Q ss_pred CCCCccceeeccCCCCCCCCCCCCcEEEEEEEcCC-CCEEEEEEeCCCCcEEE
Q 003901 671 DFPTADRLQWHGHAPGLPDWSDKSRFVAFTLIDSV-KGEIYVAFNASHLPVII 722 (788)
Q Consensus 671 ~~~~~~~~~~~~~~~~~~~~~~~~~vlaf~r~~~~-~~~i~Vv~N~~~~~~~v 722 (788)
.+.. ...++.++++.|...+ ++.+++++|+++.++.+
T Consensus 430 ~~~~---------------~~~~~~~~~~~r~~~~~~~~~~~~~n~~~~~~~~ 467 (470)
T TIGR03852 430 SIDI---------------ETPSENQIEIVRTNKDGGNKAILTANLKTKTFTI 467 (470)
T ss_pred ceEe---------------cCCCCcEEEEEEEcCCCCceEEEEEecCCCcEec
Confidence 5432 2346789999997654 57899999999987654
No 31
>PRK13840 sucrose phosphorylase; Provisional
Probab=100.00 E-value=5.5e-38 Score=349.52 Aligned_cols=402 Identities=15% Similarity=0.208 Sum_probs=256.5
Q ss_pred CeEEEEEeccCcccCCCCCCCCCcCHHHHHhhhH-HHHHcCCCeEEECccccc-CccCcccCCCCCCCcccCCCCC--CC
Q 003901 238 DLIIYEVHVRGFTRHESSKTEHPGTYLGVVEKLD-HLKDLGINCLELMPCHEF-NELEYFSYNSVLGDYNYSSAGI--RN 313 (788)
Q Consensus 238 ~~viYei~v~~Ft~~~~s~~~~~G~~~gl~~~L~-yLk~LGvt~I~L~Pi~~~-~~~~~~~~~~~~~~wgY~~~~~--~~ 313 (788)
+.++.-.+.+++.+ ||++||+++|+ ||++| |++|||||+|+. +. ...||++.+| ++
T Consensus 3 n~~~litY~Ds~~~---------GdL~gl~~kLd~yL~~l-v~~vhllPff~psp~----------sD~GYdv~DY~~VD 62 (495)
T PRK13840 3 NKVQLITYADRLGD---------GGLKSLTALLDGRLDGL-FGGVHILPFFYPIDG----------ADAGFDPIDHTKVD 62 (495)
T ss_pred CceEEEEeccCCCC---------CCHhHHHHHHHHHHHHH-hCeEEECCCccCCCC----------CCCCCCCcChhhcC
Confidence 44666667776542 89999999999 59999 999999999953 22 1259999999 99
Q ss_pred CCCCcHHHHHHHHHHHHHcCCEEEEEeeeccccCCCCCCCccccCC--CCCccceeeCCC-------------------C
Q 003901 314 CGHDAINEFKLLVREAHKRGIEVVMDVVFNHTVEGNDKGPILSFRG--VDNSVYYMLAPK-------------------G 372 (788)
Q Consensus 314 ~~~G~~~elk~lV~~aH~~Gi~VilDvV~NH~~~~~~~~~~~~~~~--~~~~~yy~~~~~-------------------g 372 (788)
|+||+.+||++|++ ||+||+|+|+|||+..|+|+..+.-++ ....+||.+.++ |
T Consensus 63 P~fGt~eDf~~L~~-----giklmlDlV~NHtS~~h~WFqd~l~~~~~s~Y~D~fi~~d~~~~~~~~~~~~~~if~~~~g 137 (495)
T PRK13840 63 PRLGDWDDVKALGK-----THDIMADLIVNHMSAESPQFQDVLAKGEASEYWPMFLTKDKVFPDGATEEDLAGIYRPRPG 137 (495)
T ss_pred cccCCHHHHHHHHh-----CCeEEEEECCCcCCCCcHHHHHHHHhCCCCCccCeEEECCCCCcCCCCCcccccccCCCCC
Confidence 99999999999985 999999999999999998765432121 223445543210 1
Q ss_pred C-c--------------ccCCCCccccCCCCHHHHHHHHHHHHHHHHhcCccEEEEecccccccCCCccccccccCcccc
Q 003901 373 E-F--------------YNYSGCGNTFNCNHPVVRQFIVDCLRYWVTEMHVDGFRFDLASIMTRGSSLWDSVNVYGIPIE 437 (788)
Q Consensus 373 ~-~--------------~~~~g~~~dln~~~p~vr~~i~d~l~~W~~e~gVDGFR~D~a~~l~~~~~~w~~~~~~g~~~~ 437 (788)
. + ..|...++|||++||+|+++|++++++|+ +.||||||+|++.++.++.
T Consensus 138 ~~~~~~~~~~~~~~~~w~tF~~~QpDLN~~NP~V~~~i~~il~fwl-~~GVDgfRLDAv~~l~K~~-------------- 202 (495)
T PRK13840 138 LPFTTYTLADGKTRLVWTTFTPQQIDIDVHSAAGWEYLMSILDRFA-ASHVTLIRLDAAGYAIKKA-------------- 202 (495)
T ss_pred CcccceEecCCCceEEeccCCcccceeCCCCHHHHHHHHHHHHHHH-HCCCCEEEEechhhhhcCC--------------
Confidence 1 1 12344679999999999999999999999 8999999999998885531
Q ss_pred CCccccCCCCCC----hHHHHHHHcCCccccceeeeeeccCCCcc-cccccCCCCcccccchhHHHHHHHHH-hCCCCcH
Q 003901 438 GDLLTTGTPLRS----PPLIDLISNDPILRGVKLIAEAWDTGGLY-QVGIFPHWGIWSEWNGKYRDIVRQFI-KGTDGFA 511 (788)
Q Consensus 438 ~~~~~~g~~~~~----~~~~~~i~~~~~~~~~~ligE~w~~~~~~-~~~~~~~~~~~~~~n~~f~~~lr~~~-~g~~~~~ 511 (788)
|+.|.. ..+++.++..-...+..+|+|.|..-+.. ..+. .....+|+.+...+...+ .|+ .
T Consensus 203 ------gt~c~~~pe~~~~l~~lr~~~~~~~~~ll~Ei~~y~~~~~~~~~----e~~~vYnF~Lp~ll~~aL~~~~---~ 269 (495)
T PRK13840 203 ------GTSCFMIPETFEFIDRLAKEARARGMEVLVEIHSYYKTQIEIAK----KVDRVYDFALPPLILHTLFTGD---V 269 (495)
T ss_pred ------CCCcCCChHHHHHHHHHHHHhhhcCCEEEEeCccccCccccccc----cccEEecchhhHHHHHHHHhCC---c
Confidence 233321 22444444311112567899987532110 1111 244556666666555544 333 3
Q ss_pred HHHHHHHhCCCCccCCCCCCCCcceeecccCCCcchhh----------hhhhcccccc-------cCCC---CCCCC--C
Q 003901 512 GAFAECLCGSPNLYQGGGRKPWNSINFVCAHDGFSLAD----------LVSYNQKHNL-------ANGE---DNNDG--E 569 (788)
Q Consensus 512 ~~~~~~l~~~~~~~~~~~~~p~~~vnfv~nHD~~rl~d----------~~~~~~~~n~-------~~g~---~~~dg--~ 569 (788)
..+...+... |..++||+.|||+..+.| ++...+...+ ..+. .+-++ .
T Consensus 270 ~~L~~~l~~~----------p~~~~n~L~~HDgIgl~d~~~~~~~~~gll~~~e~~~l~~~~~~~~~~~~~~~~~~~as~ 339 (495)
T PRK13840 270 EALAHWLEIR----------PRNAVTVLDTHDGIGIIDVGADDRGLAGLLPDEQIDNLVETIHANSHGESRQATGAAASN 339 (495)
T ss_pred hHHHHHHHhC----------CCccEEeeecCCCCCcccccccccccccCCCHHHHHHHHHHHHHhccCceeecCCccccc
Confidence 4445555442 345579999999999822 2211111100 0000 00011 0
Q ss_pred CCCCCCCcCCCCcchhHHHHHHHHHHHHHHHHHHHhcCCceEEecccccccCCCC---CCCCcCCCCCccccccCcccCc
Q 003901 570 THNNSWNCGQEGEFANILVKKLRRRQMRNFFLCLMVSQGVPMISMGDEYGHTKGG---NNNTYCHDNDINYFRWDKKEES 646 (788)
Q Consensus 570 ~~~~sw~~g~~~~~~~~~~~~~~~~~~r~a~alllt~pGiP~Iy~GdE~G~~~~g---~~n~y~~~~~~~~~~W~~~~~~ 646 (788)
...+.-||+-....... ..+..++.+++|++||||.||||+|+|..+.- ..-..++.-.|..++|+..+..
T Consensus 340 ~~~Y~in~~~~~Al~~~------d~r~lla~ai~~~~~GiP~iY~~~ll~~~ND~~~~~~t~~~R~inR~~~~~~~~~~~ 413 (495)
T PRK13840 340 LDLYQVNCTYYDALGRN------DQDYLAARAIQFFAPGIPQVYYVGLLAGPNDMELLARTNVGRDINRHYYSTAEIDEA 413 (495)
T ss_pred ccchhhhccHHHHhcCC------cHHHHHHHHHHHcCCCcceeeechhhccCccHHHHHhcCCCcccCCCCCCHHHHHHH
Confidence 11223334332211111 24677889999999999999999999986521 0111245556677788765532
Q ss_pred -chHHHHHHHHHHHHHhhCccCCCCCCCCccceeeccCCCCCCCCCCCCcEEEEEEEcCCCCEEEEEEeCCCCcEEEECC
Q 003901 647 -KSDFFRFCCLLTKFRHECESLGLSDFPTADRLQWHGHAPGLPDWSDKSRFVAFTLIDSVKGEIYVAFNASHLPVIISLP 725 (788)
Q Consensus 647 -~~~l~~~~r~Li~lRk~~~aL~~g~~~~~~~~~~~~~~~~~~~~~~~~~vlaf~r~~~~~~~i~Vv~N~~~~~~~v~Lp 725 (788)
...+++-+++||++|+++|||. |++.. ...++..+...|..+. ....+.+|+......+...
T Consensus 414 l~~~v~~~l~~li~~R~~~~aF~-~~~~~---------------~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 476 (495)
T PRK13840 414 LERPVVKALNALIRFRNEHPAFD-GAFSY---------------AADGDTSLTLSWTAGD-SSASLTLDFAPKKGLITAL 476 (495)
T ss_pred HHHHHHHHHHHHHHHHhcCcccC-ceEEE---------------ecCCCCeEEEEEecCC-ceEEEEEEcccceEEEEec
Confidence 2668899999999999999995 54422 1124456777776553 6777888888766555443
No 32
>COG0366 AmyA Glycosidases [Carbohydrate transport and metabolism]
Probab=100.00 E-value=6.2e-38 Score=362.92 Aligned_cols=406 Identities=24% Similarity=0.308 Sum_probs=246.5
Q ss_pred eEEEEEeccCcccCCCCCC---CCCcCHHHHHhhhHHHHHcCCCeEEECcccccCccCcccCCCCCCCcccCCCCC--CC
Q 003901 239 LIIYEVHVRGFTRHESSKT---EHPGTYLGVVEKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYNYSSAGI--RN 313 (788)
Q Consensus 239 ~viYei~v~~Ft~~~~s~~---~~~G~~~gl~~~L~yLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~wgY~~~~~--~~ 313 (788)
.+||++++++|.+++.++. ..+|||+||+++|||||+|||++|||+||++.+ ..++||++.+| ++
T Consensus 1 ~viyqi~~~~f~d~~~~~~~~~~G~Gdl~Gi~~~LdYl~~LGv~aiwl~Pi~~s~----------~~~~gY~~~Dy~~id 70 (505)
T COG0366 1 AVIYQIYPDRFADSNGSNGPDYDGGGDLKGITEKLDYLKELGVDAIWLSPIFESP----------QADHGYDVSDYTKVD 70 (505)
T ss_pred CcEEEEechhhcCCCCCCccCCCCcccHHhHHHhhhHHHHhCCCEEEeCCCCCCC----------ccCCCccccchhhcC
Confidence 4899999999999654211 226999999999999999999999999999863 34468999998 88
Q ss_pred CCCCcHHHHHHHHHHHHHcCCEEEEEeeeccccCCCCCCCccccCCC-CC-ccceeeCC---------------------
Q 003901 314 CGHDAINEFKLLVREAHKRGIEVVMDVVFNHTVEGNDKGPILSFRGV-DN-SVYYMLAP--------------------- 370 (788)
Q Consensus 314 ~~~G~~~elk~lV~~aH~~Gi~VilDvV~NH~~~~~~~~~~~~~~~~-~~-~~yy~~~~--------------------- 370 (788)
+.+|+++||++||++||++||+||||+|+||++..++|+........ .. .+||.|.+
T Consensus 71 ~~~Gt~~d~~~li~~~H~~gi~vi~D~V~NH~s~~~~~f~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~ 150 (505)
T COG0366 71 PHFGTEEDFKELVEEAHKRGIKVILDLVFNHTSDEHPWFKEARSSKPNPKRSDYYIWRDPDPDGTPPNNWFSVFGGDAWT 150 (505)
T ss_pred cccCCHHHHHHHHHHHHHCCCEEEEEeccCcCCCccHHHHHHhcCCCCcccCCCceEccCcccCCCCCcchhhcCCCCCC
Confidence 99999999999999999999999999999999998876433221111 01 24444421
Q ss_pred ---CCCcc--cCCCCccccCCCCHHHHHHHHHHHHHHHHhcCccEEEEecccccccCCCccccccccCccccCCccccCC
Q 003901 371 ---KGEFY--NYSGCGNTFNCNHPVVRQFIVDCLRYWVTEMHVDGFRFDLASIMTRGSSLWDSVNVYGIPIEGDLLTTGT 445 (788)
Q Consensus 371 ---~g~~~--~~~g~~~dln~~~p~vr~~i~d~l~~W~~e~gVDGFR~D~a~~l~~~~~~w~~~~~~g~~~~~~~~~~g~ 445 (788)
.++++ .+...+++||+.+|+||+.+++.+++|+ ++||||||+|+++++..... ... ...
T Consensus 151 ~~~~~~~~~~~~~~~~~dln~~n~~v~~~~~~~~~~W~-~~gvDGfRlDa~~~~~~~~~--~~~-------------~~~ 214 (505)
T COG0366 151 WGNTGEYYLHLFSSEQPDLNWENPEVREELLDVVKFWL-DKGVDGFRLDAAKHISKDFG--LPP-------------SEE 214 (505)
T ss_pred cCCCCceEEEecCCCCCCcCCCCHHHHHHHHHHHHHHH-HcCCCeEEeccHhhhccccC--CCC-------------ccc
Confidence 11122 2233457899999999999999999999 59999999999999976311 000 000
Q ss_pred CC-CChHHHHHHHcCCccccceeeeeeccCCCcccccccCCCCcccccchhHH-HHHHHHHhCC----------CCcHHH
Q 003901 446 PL-RSPPLIDLISNDPILRGVKLIAEAWDTGGLYQVGIFPHWGIWSEWNGKYR-DIVRQFIKGT----------DGFAGA 513 (788)
Q Consensus 446 ~~-~~~~~~~~i~~~~~~~~~~ligE~w~~~~~~~~~~~~~~~~~~~~n~~f~-~~lr~~~~g~----------~~~~~~ 513 (788)
.. ....+.+.+.. ....+...++.+......... .. .....+..+. ..+...+... ......
T Consensus 215 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (505)
T COG0366 215 NLTFLEEIHEYLRE--ENPDVLIYGEAITDVGEAPGA-VK---EDFADNTSFTNPELSMLFDFSHVGLDFEALAPLDAEE 288 (505)
T ss_pred ccccHHHHHHHHHH--HHHHHHhcCcceeeeeccccc-cc---hhhhhccchhhhhHhhccccccccccccccCcccHHH
Confidence 00 00111121111 011111112222110000000 00 0000000000 0000000000 011222
Q ss_pred HHHHHhCCCCccCCCCCCCCcceeecccCCCcchhhhhhhcccccccCCCCCCCCCCCCCCCCcCCCCcchhHHHHHHHH
Q 003901 514 FAECLCGSPNLYQGGGRKPWNSINFVCAHDGFSLADLVSYNQKHNLANGEDNNDGETHNNSWNCGQEGEFANILVKKLRR 593 (788)
Q Consensus 514 ~~~~l~~~~~~~~~~~~~p~~~vnfv~nHD~~rl~d~~~~~~~~n~~~g~~~~dg~~~~~sw~~g~~~~~~~~~~~~~~~ 593 (788)
+...+........ ........|.+|||..|+.+... .+ .+ .+.
T Consensus 289 ~~~~~~~~~~~~~---~~~~~~~~~~~~hD~~r~~~~~~----------~~---------------~~---------~~~ 331 (505)
T COG0366 289 LKEILADWPLAVN---LNDGWNNLFLSNHDQPRLLSRFG----------DD---------------VG---------GRD 331 (505)
T ss_pred HHHHHHHHHhhhc---cccCchhhhhhhcCccceeeecc----------CC---------------cc---------chH
Confidence 2222222111110 01112233789999987655431 00 00 024
Q ss_pred HHHHHHHHHHHhcCCceEEecccccccCCCCCCC-------------CcCCCCCccccccC-------------------
Q 003901 594 RQMRNFFLCLMVSQGVPMISMGDEYGHTKGGNNN-------------TYCHDNDINYFRWD------------------- 641 (788)
Q Consensus 594 ~~~r~a~alllt~pGiP~Iy~GdE~G~~~~g~~n-------------~y~~~~~~~~~~W~------------------- 641 (788)
..++++.+++++.+|+|+||+|+|+|++.....+ .-.+++.+.+|.|+
T Consensus 332 ~~~~~~~~~~~~~~g~p~iy~G~e~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~ 411 (505)
T COG0366 332 ASAKLLAALLFLLPGTPFIYYGDELGLTNFKDPPIKYYDDVELDSIILLSRDGCRTPMPWDENGLNAGFTGGKPWLSVNP 411 (505)
T ss_pred HHHHHHHHHHHhCCCCcEEecccccCCCCCCCcchhhhchhhhhhhhhccccCCCCCcCCCCCCCCCCccCCCcCcccCh
Confidence 5677788889999999999999999998754432 11234677888888
Q ss_pred --------ccc-Cc--chHHHHHHHHHHHHHhhCccC-CCCCCCCccceeeccCCCCCCCCCCCCcEEEEEEEcCCCCEE
Q 003901 642 --------KKE-ES--KSDFFRFCCLLTKFRHECESL-GLSDFPTADRLQWHGHAPGLPDWSDKSRFVAFTLIDSVKGEI 709 (788)
Q Consensus 642 --------~~~-~~--~~~l~~~~r~Li~lRk~~~aL-~~g~~~~~~~~~~~~~~~~~~~~~~~~~vlaf~r~~~~~~~i 709 (788)
... .+ ..+++.++++|+++|+.+.++ ..|.... ........+++|.|.... +.+
T Consensus 412 ~~~~~~~~~~~~~d~~~~s~~~~~~~l~~~r~~~~~~~~~g~~~~-------------~~~~~~~~~~~~~~~~~~-~~~ 477 (505)
T COG0366 412 NDLLGINVEAQLADELPESLFNFYRRLIALRKQHSALLANGEDFV-------------LLADDDPSLLAFLRESGG-ETL 477 (505)
T ss_pred hhhhhhhHHHHhcccCcccHHHHHHHHHHHHHhhhhhhcCcccce-------------ecCCCCceEEEEecccCC-ceE
Confidence 111 11 357899999999999998544 4442222 012234579999998765 689
Q ss_pred EEEEeCCCCcEEEECCCC
Q 003901 710 YVAFNASHLPVIISLPKR 727 (788)
Q Consensus 710 ~Vv~N~~~~~~~v~Lp~~ 727 (788)
+|++|++.....+.+|..
T Consensus 478 ~~~~n~~~~~~~~~~p~~ 495 (505)
T COG0366 478 LVVNNLSEEEQEVELPGS 495 (505)
T ss_pred EEEEcCCCccccccCCch
Confidence 999999988767777753
No 33
>KOG0471 consensus Alpha-amylase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=3.7e-36 Score=344.50 Aligned_cols=454 Identities=17% Similarity=0.226 Sum_probs=274.3
Q ss_pred CCCCCeEEEEEeccCcccCCCCCCCCCcCHHHHHhhhHHHHHcCCCeEEECcccccCccCcccCCCCCCCcccCCCCC--
Q 003901 234 YPQRDLIIYEVHVRGFTRHESSKTEHPGTYLGVVEKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYNYSSAGI-- 311 (788)
Q Consensus 234 ~~~~~~viYei~v~~Ft~~~~s~~~~~G~~~gl~~~L~yLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~wgY~~~~~-- 311 (788)
..|+..++|||.+++|.+++. +..|+++||++||+|||+||||+|||+||++... .+.||.+.++
T Consensus 13 ~~W~~~~~YQI~~~sF~~s~~---d~~G~~~GI~~kldyi~~lG~taiWisP~~~s~~----------~~~GY~~~d~~~ 79 (545)
T KOG0471|consen 13 DWWKTESIYQIYPDSFADSDG---DGVGDLKGITSKLDYIKELGFTAIWLSPFTKSSK----------PDFGYDASDLEQ 79 (545)
T ss_pred hhhhcCceeEEeccccccccC---CCccccccchhhhhHHHhcCCceEEeCCCcCCCH----------HHhccCccchhh
Confidence 367899999999999998543 4459999999999999999999999999999753 2578999888
Q ss_pred CCCCCCcHHHHHHHHHHHHHcCCEEEEEeeeccccCCCCCCCccccCCCCCccceeeCCCCCc--------c--------
Q 003901 312 RNCGHDAINEFKLLVREAHKRGIEVVMDVVFNHTVEGNDKGPILSFRGVDNSVYYMLAPKGEF--------Y-------- 375 (788)
Q Consensus 312 ~~~~~G~~~elk~lV~~aH~~Gi~VilDvV~NH~~~~~~~~~~~~~~~~~~~~yy~~~~~g~~--------~-------- 375 (788)
++|+|||++||++||+++|++||++|+|+|+||++..++|+...........+||.+.+.+.+ .
T Consensus 80 l~p~fGt~edf~~Li~~~h~~gi~ii~D~viNh~~~~~~wf~~~~~~~~~y~d~~~~~~~~~~~~g~~~~p~nw~~~~~~ 159 (545)
T KOG0471|consen 80 LRPRFGTEEDFKELILAMHKLGIKIIADLVINHRSDEVEWFKASPTSKTGYEDWYPWHDGSSLDVGKRIPPLNWLSVFGG 159 (545)
T ss_pred hcccccHHHHHHHHHHHHhhcceEEEEeeccccCCccccccccCccccccceeeeeccCcccccccCCCCccchHhhhcc
Confidence 899999999999999999999999999999999998887754333333333345554443211 1
Q ss_pred ---------------cCCCCccccCCCCHHHHHHHHHHHH-HHHHhcCccEEEEecccccccCCCccccccccCccccCC
Q 003901 376 ---------------NYSGCGNTFNCNHPVVRQFIVDCLR-YWVTEMHVDGFRFDLASIMTRGSSLWDSVNVYGIPIEGD 439 (788)
Q Consensus 376 ---------------~~~g~~~dln~~~p~vr~~i~d~l~-~W~~e~gVDGFR~D~a~~l~~~~~~w~~~~~~g~~~~~~ 439 (788)
.+..-++|+|+++|.|++.|.++++ +|+ ++||||||+|+++++... +|..
T Consensus 160 s~~~~~e~~~~~~l~~~~~~~pDln~~n~~V~~~~~~~l~~~~~-~~gvdGfRiD~v~~~~~~--~~~~----------- 225 (545)
T KOG0471|consen 160 SAWPFDEGRQKYYLGQFAVLQPDLNYENPDVRKAIKEWLRDFWL-EKGVDGFRIDAVKGYAGE--NFKN----------- 225 (545)
T ss_pred ccCcccccccceeccchhhcCCCCCCCCHHHHHHHHHHHHHHHh-hcCCCeEEEEcccccccc--cccc-----------
Confidence 1122347999999999999999999 887 999999999999998642 2211
Q ss_pred ccccCCCCCChHHHHHHHcCCccccceeeeeeccCCCcccccccCCCCcccccchhHHHHHHHHHhCCCCcHHHHHHHHh
Q 003901 440 LLTTGTPLRSPPLIDLISNDPILRGVKLIAEAWDTGGLYQVGIFPHWGIWSEWNGKYRDIVRQFIKGTDGFAGAFAECLC 519 (788)
Q Consensus 440 ~~~~g~~~~~~~~~~~i~~~~~~~~~~ligE~w~~~~~~~~~~~~~~~~~~~~n~~f~~~lr~~~~g~~~~~~~~~~~l~ 519 (788)
..... .+.-.||.|+....+.. ....+..+..-+..+....+.++.......+--..++.
T Consensus 226 ---------------~~~~~----p~~~~~~~~~~~~~~~~-~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 285 (545)
T KOG0471|consen 226 ---------------MWPDE----PVFDVGEKLQDDNYVAY-QYNDYGEDQPEIHDLIRAERFLLDDYSAAFGFGDKRIL 285 (545)
T ss_pred ---------------cccCC----CcccceeEecCcchhhc-ccccccccchhhhhHHHHHHhhhhhhhhcccccchhhh
Confidence 00001 23445565544321110 00111111111122222222222111000000000000
Q ss_pred CCCCccCCCCCCCCcceeecccCCCcchhh------hhhhc-------ccccccCCCCCCCCCCCCCCCCcCCCCcchhH
Q 003901 520 GSPNLYQGGGRKPWNSINFVCAHDGFSLAD------LVSYN-------QKHNLANGEDNNDGETHNNSWNCGQEGEFANI 586 (788)
Q Consensus 520 ~~~~~~~~~~~~p~~~vnfv~nHD~~rl~d------~~~~~-------~~~n~~~g~~~~dg~~~~~sw~~g~~~~~~~~ 586 (788)
.. ..| .......+|.+||+..+..+ .++.. -++.+..--.+.+.++....|..+..... .
T Consensus 286 ~~-~~~----~~~~~~~~~~~n~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~a~W~~~~~~~~--r 358 (545)
T KOG0471|consen 286 QT-EAY----SSLEQLLRLLENSSKPRGSDLPFNFDTLSDLGLTVASIYKEVEVDWLSNHDTENRWAHWVLGNHDQA--R 358 (545)
T ss_pred hh-hhh----ccHHHHHhhhccCCCCccccccchhhhhhhhhccchHHHHHHHHHHHhcCCccCCceeeeecCccch--h
Confidence 00 000 01124455666666433110 00000 00000000111222333345666653322 1
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCceEEecccccccCCC--CCCCCcCCC--CCccccccCcc-------------------
Q 003901 587 LVKKLRRRQMRNFFLCLMVSQGVPMISMGDEYGHTKG--GNNNTYCHD--NDINYFRWDKK------------------- 643 (788)
Q Consensus 587 ~~~~~~~~~~r~a~alllt~pGiP~Iy~GdE~G~~~~--g~~n~y~~~--~~~~~~~W~~~------------------- 643 (788)
...++.....++..++++++||+|++|+|+|+|+... ...+..... ..+++|+|+..
T Consensus 359 ~~sr~~~~~~~~~~~l~~tlpG~~~~y~g~e~g~~~~~~~~~~~~~~~~~~~rt~~~w~~~~~~gfs~~~~~~~~~~~~~ 438 (545)
T KOG0471|consen 359 LASRFGSDSVDLLNVLLLTLPGTPVTYYGEEIGMDDVAISGEDGEDPKLMQSRTPMQWDESTNAGFSEASKTWLPVNADY 438 (545)
T ss_pred hHHHhcchhHHHHhHHhcccCCCceEEEeEEeeccceeeccCCCcCcHHhccCCccccccccccCCCCccCcceeccccc
Confidence 2223334446777789999999999999999999875 111111110 12667777654
Q ss_pred --------cCcchHHHHHHHHHHHHHhhCccCCCCCCCCccceeeccCCCCCCCCCCCCcEEEEEEEcCCCCEEEEEEeC
Q 003901 644 --------EESKSDFFRFCCLLTKFRHECESLGLSDFPTADRLQWHGHAPGLPDWSDKSRFVAFTLIDSVKGEIYVAFNA 715 (788)
Q Consensus 644 --------~~~~~~l~~~~r~Li~lRk~~~aL~~g~~~~~~~~~~~~~~~~~~~~~~~~~vlaf~r~~~~~~~i~Vv~N~ 715 (788)
...++++...++++..||+....+..|.... ...+..+++|.|.......+++++|+
T Consensus 439 ~~~n~~~~~~~~~s~~~~~~~~~~lr~~~~~~~~g~~~~---------------~~~~~~if~~~r~~~~~~~~~~~~~~ 503 (545)
T KOG0471|consen 439 TVINVKMQSGDPQSTLKLFKRLLDLRKSERSYLHGSFVL---------------FAATPGLFSFSRNWDGNERFIAVLNF 503 (545)
T ss_pred hhheeeccccCCccHHHHHHHHHHHhhhcccccccceee---------------ecCCCceEEEEeccCCCceEEEEEec
Confidence 1124788999999999999877555554322 23467899999998887889999999
Q ss_pred CCCcEEEECCCCCCCCeEEEecCCCCCCCCccCCCCchhhhhhhhcCCCCCCeeEEeeCCeEEEEE
Q 003901 716 SHLPVIISLPKRPGYRWEPLVDTSKPEPFDFLSSDLPAKEIAIKQYAPFLDANLYPMLSYSSIILL 781 (788)
Q Consensus 716 ~~~~~~v~Lp~~~g~~w~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~~vl~ 781 (788)
++.+....+-.... ...+.++ . .......+.|.|.+++||.
T Consensus 504 ~~~~~~~~~~~~~~--~~~~~~~-~----------------------~~~~~~~~~l~p~e~~vl~ 544 (545)
T KOG0471|consen 504 GDSPLSLNLTDLDS--VSLLSSN-Y----------------------SDVDLSRLKLEPHEGLVLR 544 (545)
T ss_pred CCcccccccccccc--eeeeecc-c----------------------cccccceeeecCCceEEEe
Confidence 98776655443211 1111111 0 1123467899999999985
No 34
>TIGR02455 TreS_stutzeri trehalose synthase, Pseudomonas stutzeri type. Trehalose synthase catalyzes a one-step conversion of maltose to trehalose. This is an alternative to the OtsAB and TreYZ pathways. This family includes a characterized example from Pseudomonas stutzeri plus very closely related sequences from other Pseudomonads. Cutoff scores are set to find a more distantly related sequence from Desulfovibrio vulgaris, likely to be functionally equivalent, between trusted and noise limits.
Probab=100.00 E-value=7.2e-35 Score=324.39 Aligned_cols=480 Identities=15% Similarity=0.104 Sum_probs=289.1
Q ss_pred CCeEEEEEeccCcccCCCCCCCCCcCHHHHH-h--hhHHHHHcCCCeEEECcccccCccCcccCCCCCCCcccCCCCC-C
Q 003901 237 RDLIIYEVHVRGFTRHESSKTEHPGTYLGVV-E--KLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYNYSSAGI-R 312 (788)
Q Consensus 237 ~~~viYei~v~~Ft~~~~s~~~~~G~~~gl~-~--~L~yLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~wgY~~~~~-~ 312 (788)
...+.+.+++.++.... +..+.+.. + ..+||++|||++|||+|++++.....+...+.. ..+|+..++ +
T Consensus 50 ~a~~W~~~~P~s~i~~~------~~s~~~~L~~~~~wdyL~~LGV~~iwl~P~~~SGgi~g~~~tP~~-D~gyDi~d~~I 122 (688)
T TIGR02455 50 IASVWFTAYPAAIIAPE------GCSVLEALADDALWKALSEIGVQGIHNGPIKLSGGIRGREFTPSI-DGNFDRISFDI 122 (688)
T ss_pred hcCeeEEecchhhcCCC------CCcHHHHhcChHHHHHHHHhCCCEEEeCcceecccccccCCCCCC-CCCCCcccCcc
Confidence 45677888998886532 23344433 2 249999999999999999998554433333222 258998888 8
Q ss_pred CCCCCcHHHHHHHHHHHHHcCCEEEEEeeeccccCCCCCCCccccCCCCCccce-----------eeCC--C--------
Q 003901 313 NCGHDAINEFKLLVREAHKRGIEVVMDVVFNHTVEGNDKGPILSFRGVDNSVYY-----------MLAP--K-------- 371 (788)
Q Consensus 313 ~~~~G~~~elk~lV~~aH~~Gi~VilDvV~NH~~~~~~~~~~~~~~~~~~~~yy-----------~~~~--~-------- 371 (788)
+|.|||.+||++||++||++||+||+|+|+|||+.+++ +........+.+.|| .+.+ .
T Consensus 123 dp~~GT~eDf~~L~~~Ah~~G~~vi~DlVpnHTs~ghd-F~lAr~~~~~Y~g~Y~mvei~~~~W~vwpd~~~~~~~~~l~ 201 (688)
T TIGR02455 123 DPLLGSEEELIQLSRMAAAHNAITIDDIIPAHTGKGAD-FRLAELAHGDYPGLYHMVEIREEDWALLPEVPAGRDAVNLL 201 (688)
T ss_pred CcccCCHHHHHHHHHHHHHCCCEEEEEeCCCCCCCCcc-hHHHhhcCCCCCCceeeccccccccccCCCCCccccccccc
Confidence 99999999999999999999999999999999999987 332222222344555 2211 0
Q ss_pred ----------------------------------------------CCcc--cCCCCccccCCCCHH--HHHHHH-HHHH
Q 003901 372 ----------------------------------------------GEFY--NYSGCGNTFNCNHPV--VRQFIV-DCLR 400 (788)
Q Consensus 372 ----------------------------------------------g~~~--~~~g~~~dln~~~p~--vr~~i~-d~l~ 400 (788)
+.+| .|...+|+||+.||. ||+.|+ ++++
T Consensus 202 ~~~~~~L~~~g~i~~~l~rviF~~pg~e~s~Wt~d~~v~g~dG~~Rrw~Y~H~F~~~QPdLNw~dPs~av~~~~~gdal~ 281 (688)
T TIGR02455 202 PAQCDELKAKHYIVGQLQRVIFFEPGIKDTDWSATGEITGVDGKTRRWVYLHYFKEGQPSLNWLDPTFAAQQLIIGDALH 281 (688)
T ss_pred HHHHHHHhhccCcccccccceecCCCcccCCceecccccCCCccchhhhhhhhccCCCCccCccCccHHHHHHHHHHHHH
Confidence 1111 233345899999999 999999 9999
Q ss_pred HHHHhcCccEEEEecccccccCCCccccccccCccccCCccccCCCCCChHHHHHHHc----CCccccceeeeeeccCCC
Q 003901 401 YWVTEMHVDGFRFDLASIMTRGSSLWDSVNVYGIPIEGDLLTTGTPLRSPPLIDLISN----DPILRGVKLIAEAWDTGG 476 (788)
Q Consensus 401 ~W~~e~gVDGFR~D~a~~l~~~~~~w~~~~~~g~~~~~~~~~~g~~~~~~~~~~~i~~----~~~~~~~~ligE~w~~~~ 476 (788)
+|+ +.|+||||+|++.++..+.. .+++.+.. ..++++.++. .-..++..+++|.--...
T Consensus 282 ~w~-~lG~~GfRLDAvpfLg~e~~-----------~~~~~~~e-----~h~ll~~~r~~l~~~~r~~Gg~ll~E~nl~~~ 344 (688)
T TIGR02455 282 AID-CLGARGLRLDANGFLGVERR-----------AEGTAWSE-----GHPLSLTGNQLIAGAIRKAGGFSFQELNLTID 344 (688)
T ss_pred HHH-HhccccceeccccceeeecC-----------CCCCCCCc-----cCHHHHHHHHHHHHhhhcCCeeEeeeccCCHH
Confidence 999 99999999999999864321 11111111 1234333332 123457778888621110
Q ss_pred cccccccCCCCcccccchhHHHHHHHHHhCCCCcHHHHHHHHhCCCCccCCCCCCCCcceeecccCCCcchhhhhhhccc
Q 003901 477 LYQVGIFPHWGIWSEWNGKYRDIVRQFIKGTDGFAGAFAECLCGSPNLYQGGGRKPWNSINFVCAHDGFSLADLVSYNQK 556 (788)
Q Consensus 477 ~~~~~~~~~~~~~~~~n~~f~~~lr~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~p~~~vnfv~nHD~~rl~d~~~~~~~ 556 (788)
.. ...|.. +.+..+|+..+..+...+.. +...-+...|...+.. +.++.+.++|+.|||+.|+. ++.+-..
T Consensus 345 d~-~~~~g~-~~dl~~dF~t~p~~~~AL~t--gda~pLr~~L~~~~~~----gid~~~~~~~LrNHDELtle-lvh~~~~ 415 (688)
T TIGR02455 345 DI-AAMSHG-GADLSYDFITRPAYHHALLT--GDTEFLRLMLKEMHAF----GIDPASLIHALQNHDELTLE-LVHFWTL 415 (688)
T ss_pred HH-HHHhCC-CcceeecccccHHHHHHHHc--CCHHHHHHHHHhhhcC----CCCchhhhhhccCccccchh-hhhhccc
Confidence 00 000111 22223333333333332221 2244455555554433 13566789999999998874 3311000
Q ss_pred c---------cccCCCCC-----------CCCCCCCC---CC--------------CcCCCCcchhHHHHHHHHHHHHHH
Q 003901 557 H---------NLANGEDN-----------NDGETHNN---SW--------------NCGQEGEFANILVKKLRRRQMRNF 599 (788)
Q Consensus 557 ~---------n~~~g~~~-----------~dg~~~~~---sw--------------~~g~~~~~~~~~~~~~~~~~~r~a 599 (788)
| ..-.|... -.+...++ -| +.|... . .++..-..++++++
T Consensus 416 ~~~~~~~~~g~~~~g~~l~e~~R~~m~~~~a~d~~p~~m~~~~~gi~~t~a~~ia~~~GIRr-L--ap~~~~d~~~I~~~ 492 (688)
T TIGR02455 416 HAHDHYHYKGQTLPGGHLREHIREEIYERLSGEHAPYNLKFVTNGIACTTASLIAAALGIRD-L--DAIGPADIELIKKL 492 (688)
T ss_pred ccccccccccccCCccccCHHHHHHHHHHhcCCCccccceEEeccccccchhhhhhhcCCcc-c--hhhCCCCHHHHHHH
Confidence 0 00000000 00111011 12 223221 1 11111235678889
Q ss_pred HHHHHh----cCCceEEecc--------------cccccCCCC--CCCCcCCCC----C--------ccccccCc---cc
Q 003901 600 FLCLMV----SQGVPMISMG--------------DEYGHTKGG--NNNTYCHDN----D--------INYFRWDK---KE 644 (788)
Q Consensus 600 ~alllt----~pGiP~Iy~G--------------dE~G~~~~g--~~n~y~~~~----~--------~~~~~W~~---~~ 644 (788)
.++|++ +||+|+|||| +|+|+...- ++..|..-+ . +...-+.. +.
T Consensus 493 h~LL~s~na~lPG~p~L~ygdl~GalpL~~~~v~deigmGD~~wl~rggfs~~~~~p~~~~s~~~lP~~~~~Ygnv~~Ql 572 (688)
T TIGR02455 493 HILLVMFNAMQPGVFALSGWDLVGALPLAAEAVAELMGDGDTRWIHRGGYDLADLAPEAEASAEGLPKARALYGSLAEQL 572 (688)
T ss_pred HHHHHHhhccCCCceEeecccccccccccccchhhhhccCccccccCCCcccCCCCchhhhccCCCCCCcCCCCCHHHHh
Confidence 999999 9999999999 999986311 111121100 0 01111111 22
Q ss_pred CcchHHHHHHHHHHHHHhhCccCCCCCCCCccceeeccCCCCCCCCCCCCcEEEEEEEcC-CCCEEEEEEeCCCCcEE--
Q 003901 645 ESKSDFFRFCCLLTKFRHECESLGLSDFPTADRLQWHGHAPGLPDWSDKSRFVAFTLIDS-VKGEIYVAFNASHLPVI-- 721 (788)
Q Consensus 645 ~~~~~l~~~~r~Li~lRk~~~aL~~g~~~~~~~~~~~~~~~~~~~~~~~~~vlaf~r~~~-~~~~i~Vv~N~~~~~~~-- 721 (788)
.++.++.+++++|+++||+++.+..+.+... ...++.|+++.+... +++.+++|.|++.+++.
T Consensus 573 ~dp~S~l~~l~~il~vR~~~~i~~~~~~~~~--------------~~~~~gvLa~v~~l~~~~~~~L~v~Nfs~~~~~~~ 638 (688)
T TIGR02455 573 DEPDSFACKLKKILAVRQAYDIAASKQILIP--------------DVQAPGLLVMVHELPAGKGIQITALNFGADAIAEE 638 (688)
T ss_pred hCCccHHHHHHHHHHHHHhCCcccCceeeec--------------CCCCCcEEEEEEEcCCCCceEEEeeccCCCCeeeE
Confidence 3468999999999999999999998876541 345789999999744 34679999999997665
Q ss_pred EECCCCCCCCeEEEecCCCCCCCCccCCCCchhhhhhhhcCCCCCCeeEEeeCCeEEEEEecCC
Q 003901 722 ISLPKRPGYRWEPLVDTSKPEPFDFLSSDLPAKEIAIKQYAPFLDANLYPMLSYSSIILLLSPD 785 (788)
Q Consensus 722 v~Lp~~~g~~w~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~~vl~~~~~ 785 (788)
+.++..+++.+.++++.......+ ..+.-+++|+|+....|...+.
T Consensus 639 l~l~~~~~~~~~dl~~~~~~~~~~------------------~~~~~~i~L~~y~~~wl~~~~~ 684 (688)
T TIGR02455 639 ICLPGFAPGPVVDIIHESVEGDLT------------------DDCELMINLDPYEALALRIVNA 684 (688)
T ss_pred EeccccCCCCceeccCCCccCCcC------------------CCceeEEEecCcceEEEEeccc
Confidence 555655555667777543321100 0234678999999998887764
No 35
>PLN02784 alpha-amylase
Probab=100.00 E-value=3.4e-35 Score=337.15 Aligned_cols=303 Identities=21% Similarity=0.273 Sum_probs=196.8
Q ss_pred CCCeEEEEEeccCcccCCCCCCCCCcCHHHHHhhhHHHHHcCCCeEEECcccccCccCcccCCCCCCCcccCCCCC--CC
Q 003901 236 QRDLIIYEVHVRGFTRHESSKTEHPGTYLGVVEKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYNYSSAGI--RN 313 (788)
Q Consensus 236 ~~~~viYei~v~~Ft~~~~s~~~~~G~~~gl~~~L~yLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~wgY~~~~~--~~ 313 (788)
......|++.+..|.-... .. +.-|++|+++|+||++||||+|||+|+++.. .++||++.++ ++
T Consensus 496 ~~~~~~~eVmlQgF~Wds~--~d-g~w~~~I~ekldyL~~LG~taIWLpP~~~s~-----------s~~GY~p~D~y~ld 561 (894)
T PLN02784 496 SGTGSGFEILCQGFNWESH--KS-GRWYMELGEKAAELSSLGFTVVWLPPPTESV-----------SPEGYMPKDLYNLN 561 (894)
T ss_pred ccccCCceEEEEeEEcCcC--CC-CchHHHHHHHHHHHHHhCCCEEEeCCCCCCC-----------CCCCcCcccccccC
Confidence 3456789999999974211 11 2348999999999999999999999998753 2368888887 88
Q ss_pred CCCCcHHHHHHHHHHHHHcCCEEEEEeeeccccCCCC--CCCccccCCCCCccceee-----C----CCCCccc--CCCC
Q 003901 314 CGHDAINEFKLLVREAHKRGIEVVMDVVFNHTVEGND--KGPILSFRGVDNSVYYML-----A----PKGEFYN--YSGC 380 (788)
Q Consensus 314 ~~~G~~~elk~lV~~aH~~Gi~VilDvV~NH~~~~~~--~~~~~~~~~~~~~~yy~~-----~----~~g~~~~--~~g~ 380 (788)
++||+.+|||+||++||++||+||+|+|+||++.... .+.+..+.+.. +|... + ..|..+. ....
T Consensus 562 s~yGT~~ELk~LI~a~H~~GIkVIlDiViNH~ag~f~~~~g~~~~f~g~~--dW~d~~i~~ddp~F~GrG~~~sgddf~~ 639 (894)
T PLN02784 562 SRYGTIDELKDLVKSFHEVGIKVLGDAVLNHRCAHFQNQNGVWNIFGGRL--NWDDRAVVADDPHFQGRGNKSSGDNFHA 639 (894)
T ss_pred cCcCCHHHHHHHHHHHHHCCCEEEEEECcccccccccCCCCcccccCCee--cCCCCcccCCCcccCCcCCcCcccccCc
Confidence 9999999999999999999999999999999975321 11111111110 01000 0 0111111 1123
Q ss_pred ccccCCCCHHHHHHHHHHHHHHHHhcCccEEEEecccccccCCCccccccccCccccCCccccCCCCCChHHHHHHHcCC
Q 003901 381 GNTFNCNHPVVRQFIVDCLRYWVTEMHVDGFRFDLASIMTRGSSLWDSVNVYGIPIEGDLLTTGTPLRSPPLIDLISNDP 460 (788)
Q Consensus 381 ~~dln~~~p~vr~~i~d~l~~W~~e~gVDGFR~D~a~~l~~~~~~w~~~~~~g~~~~~~~~~~g~~~~~~~~~~~i~~~~ 460 (788)
.+|||+++|.||+.|.+++++|++++||||||||+++++. .. ++......
T Consensus 640 lPDLDh~npeVR~eL~~WlkWL~~e~G~DGfRLDaVKgf~------~~-----------------------Fvkeyv~a- 689 (894)
T PLN02784 640 APNIDHSQDFVRKDLKEWLCWMRKEVGYDGWRLDFVRGFW------GG-----------------------YVKDYMEA- 689 (894)
T ss_pred CCcCCCCCHHHHHHHHHHHHHHHhccCCCEEEEeccCCCC------HH-----------------------HHHHHHhc-
Confidence 4799999999999999999999989999999999998763 22 22222111
Q ss_pred ccccceeeeeeccCCCcccccccCCCCcccccchh---HHHHHHHHHhCCCCcHH--------HHHHHHhC---------
Q 003901 461 ILRGVKLIAEAWDTGGLYQVGIFPHWGIWSEWNGK---YRDIVRQFIKGTDGFAG--------AFAECLCG--------- 520 (788)
Q Consensus 461 ~~~~~~ligE~w~~~~~~~~~~~~~~~~~~~~n~~---f~~~lr~~~~g~~~~~~--------~~~~~l~~--------- 520 (788)
. ...+++||.|+.... .. ..+++. -++.+.+|+....+... .|...+.+
T Consensus 690 ~-kp~F~VGEyWd~~~~-~~---------g~~~Ynqd~~rq~l~dwi~~tgg~~saFDfplk~~L~~A~~~~e~wrL~d~ 758 (894)
T PLN02784 690 S-EPYFAVGEYWDSLSY-TY---------GEMDYNQDAHRQRIVDWINATNGTAGAFDVTTKGILHSALERCEYWRLSDQ 758 (894)
T ss_pred c-CCcEEEEEecccccc-cc---------CccccCchhHHHHHHHHHHhCCCceeeechhHHHHHHHHHhccchhhhhhc
Confidence 1 136899999986321 00 111111 25556666654332111 11111211
Q ss_pred ---CCCccCCCCCCCCcceeecccCCCcchhhhhhhcccccccCCCCCCCCCCCCCCCCcCCCCcchhHHHHHHHHHHHH
Q 003901 521 ---SPNLYQGGGRKPWNSINFVCAHDGFSLADLVSYNQKHNLANGEDNNDGETHNNSWNCGQEGEFANILVKKLRRRQMR 597 (788)
Q Consensus 521 ---~~~~~~~~~~~p~~~vnfv~nHD~~rl~d~~~~~~~~n~~~g~~~~dg~~~~~sw~~g~~~~~~~~~~~~~~~~~~r 597 (788)
.+.+ -+..|..+|+||+|||+.+... +|... ..+..
T Consensus 759 ~g~~~gl---v~~~P~~AVTFVDNHDTg~~Q~------------------------~w~~p--------------~~k~~ 797 (894)
T PLN02784 759 KGKPPGV---VGWWPSRAVTFIENHDTGSTQG------------------------HWRFP--------------EGKEM 797 (894)
T ss_pred cCCCCCe---eccccCceEEEecCCCCCCCcc------------------------cCCCC--------------ccchh
Confidence 1111 1357889999999999974311 22110 11234
Q ss_pred HHHHHHHhcCCceEEecccccccCCCCCCCCcCCCCCccccccCcccCcchHHHHHHHHHHHHHhhCc
Q 003901 598 NFFLCLMVSQGVPMISMGDEYGHTKGGNNNTYCHDNDINYFRWDKKEESKSDFFRFCCLLTKFRHECE 665 (788)
Q Consensus 598 ~a~alllt~pGiP~Iy~GdE~G~~~~g~~n~y~~~~~~~~~~W~~~~~~~~~l~~~~r~Li~lRk~~~ 665 (788)
+|+|++||.||+||||||+-++.. .+.+++||.+||..-
T Consensus 798 ~AYAyILthpG~PcVFy~h~y~~~-----------------------------~~~I~~Li~iRk~~g 836 (894)
T PLN02784 798 QGYAYILTHPGTPAVFYDHIFSHY-----------------------------HPEIASLISLRNRQK 836 (894)
T ss_pred hHHHHHHcCCCcceEEehhhhhhh-----------------------------HHHHHHHHHHHHHcC
Confidence 589999999999999998866421 234899999999753
No 36
>TIGR02401 trehalose_TreY malto-oligosyltrehalose synthase. This enzyme, formally named (1-4)-alpha-D-glucan 1-alpha-D-glucosylmutase, is the TreY enzyme of the TreYZ pathway of trehalose biosynthesis, an alternative to the OtsAB pathway. Trehalose may be incorporated into more complex compounds but is best known as compatible solute. It is one of the most effective osmoprotectants, and unlike the various betaines does not require nitrogen for its synthesis.
Probab=99.97 E-value=9.1e-30 Score=296.02 Aligned_cols=80 Identities=24% Similarity=0.232 Sum_probs=73.5
Q ss_pred CcCHHHHHhhhHHHHHcCCCeEEECcccccCccCcccCCCCCCCcccCCCCC--CCCCCCcHHHHHHHHHHHHHcCCEEE
Q 003901 260 PGTYLGVVEKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYNYSSAGI--RNCGHDAINEFKLLVREAHKRGIEVV 337 (788)
Q Consensus 260 ~G~~~gl~~~L~yLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~wgY~~~~~--~~~~~G~~~elk~lV~~aH~~Gi~Vi 337 (788)
+|||.+++++|+||++|||++|||+||+++.. .+.|||++.++ +++.+|+.++|++||++||++||+||
T Consensus 12 ~~tf~~~~~~L~YL~~LGv~~V~lsPi~~a~~---------gs~hGYdv~D~~~idp~lGt~edf~~Lv~aah~~Gm~vI 82 (825)
T TIGR02401 12 GFTFDDAAALLPYLKSLGVSHLYLSPILTAVP---------GSTHGYDVVDHSEINPELGGEEGLRRLSEAARARGLGLI 82 (825)
T ss_pred CCCHHHHHHhhHHHHHcCCCEEEeCcCccCCC---------CCCCCCCCCCCCCcCCCCCCHHHHHHHHHHHHHCCCEEE
Confidence 69999999999999999999999999998642 23379999988 89999999999999999999999999
Q ss_pred EEeeeccccCC
Q 003901 338 MDVVFNHTVEG 348 (788)
Q Consensus 338 lDvV~NH~~~~ 348 (788)
||+|+||++..
T Consensus 83 lDiVpNH~a~~ 93 (825)
T TIGR02401 83 VDIVPNHMAVH 93 (825)
T ss_pred EEecccccccc
Confidence 99999999876
No 37
>PRK14511 maltooligosyl trehalose synthase; Provisional
Probab=99.95 E-value=2e-25 Score=260.88 Aligned_cols=81 Identities=21% Similarity=0.247 Sum_probs=74.0
Q ss_pred CcCHHHHHhhhHHHHHcCCCeEEECcccccCccCcccCCCCCCCcccCCCCC--CCCCCCcHHHHHHHHHHHHHcCCEEE
Q 003901 260 PGTYLGVVEKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYNYSSAGI--RNCGHDAINEFKLLVREAHKRGIEVV 337 (788)
Q Consensus 260 ~G~~~gl~~~L~yLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~wgY~~~~~--~~~~~G~~~elk~lV~~aH~~Gi~Vi 337 (788)
+++|++++++|+||++||||+|||+||++... .+.|||++.++ +++.+|+.++|++||++||++||+||
T Consensus 16 ~~tf~~~~~~l~YL~~LGis~IyLsPi~~a~~---------gs~hGYdv~D~~~idp~lGt~e~f~~Lv~aah~~Gi~VI 86 (879)
T PRK14511 16 GFTFDDAAELVPYFADLGVSHLYLSPILAARP---------GSTHGYDVVDHTRINPELGGEEGLRRLAAALRAHGMGLI 86 (879)
T ss_pred CCCHHHHHHHhHHHHHcCCCEEEECcCccCCC---------CCCCCCCcCCCCCcCCCCCCHHHHHHHHHHHHHCCCEEE
Confidence 58999999999999999999999999998642 23479999988 89999999999999999999999999
Q ss_pred EEeeeccccCCC
Q 003901 338 MDVVFNHTVEGN 349 (788)
Q Consensus 338 lDvV~NH~~~~~ 349 (788)
||+|+||++.++
T Consensus 87 lDiV~NH~~~~~ 98 (879)
T PRK14511 87 LDIVPNHMAVGG 98 (879)
T ss_pred EEeccccccCcC
Confidence 999999999765
No 38
>KOG2212 consensus Alpha-amylase [Carbohydrate transport and metabolism]
Probab=99.89 E-value=4.5e-22 Score=202.97 Aligned_cols=379 Identities=18% Similarity=0.233 Sum_probs=230.9
Q ss_pred CHHHHHhhh-HHHHHcCCCeEEECcccccCccCcccCCCCCCCc-ccCCCCC-CCCCCCcHHHHHHHHHHHHHcCCEEEE
Q 003901 262 TYLGVVEKL-DHLKDLGINCLELMPCHEFNELEYFSYNSVLGDY-NYSSAGI-RNCGHDAINEFKLLVREAHKRGIEVVM 338 (788)
Q Consensus 262 ~~~gl~~~L-~yLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~w-gY~~~~~-~~~~~G~~~elk~lV~~aH~~Gi~Vil 338 (788)
++..|+... ..|.--|+..|+.+|+.|...... +....| +|++..| ++.+-|.++||+.||..|.+-|+|+++
T Consensus 38 KW~DiA~ECE~FL~p~G~~gVQVSP~nEn~~~~~----~~rPWWeRYQPvSYKL~tRSGNE~eF~dMV~RCN~VGVRiyV 113 (504)
T KOG2212|consen 38 KWVDIALECERFLAPKGFGGVQVSPPNENVAIHN----PFRPWWERYQPVSYKLCTRSGNEDEFRDMVTRCNNVGVRIYV 113 (504)
T ss_pred ehHHHHHHHHhhcCcCCcceeeecCcchhhhhcC----CCCCceeecccceEEeeccCCCHHHHHHHHHHhhccceEEEe
Confidence 467777776 678889999999999999643221 113335 8999999 889999999999999999999999999
Q ss_pred EeeeccccCCC-----------CCCC-ccccCCCCCccceeeCC-----CCCcccCC------CCc----cccCCCCHHH
Q 003901 339 DVVFNHTVEGN-----------DKGP-ILSFRGVDNSVYYMLAP-----KGEFYNYS------GCG----NTFNCNHPVV 391 (788)
Q Consensus 339 DvV~NH~~~~~-----------~~~~-~~~~~~~~~~~yy~~~~-----~g~~~~~~------g~~----~dln~~~p~v 391 (788)
|+|+|||+... +..| .-+|+|...+.+-...+ .+...++. .|. -|||..+..|
T Consensus 114 Dvv~NHM~g~~~~G~~vGt~Gs~~~p~s~SfPGVPYs~~DFn~~kc~~~~~~i~~~Nda~~V~~C~LVGL~DL~Q~s~~V 193 (504)
T KOG2212|consen 114 DAVINHMCGNAVSGGTVGTCGSYFNPGSRSFPGVPYSGWDFNDGKCKTGSGDIENYNDATQVRDCRLVGLLDLAQGSDYV 193 (504)
T ss_pred hhhhhhhccccccCCccccccCccCCCCCCCCCCCcccccCCCcccCCCccccccccchhhhhcceEeecchhhhcchHH
Confidence 99999998411 1111 12344433322211111 11122221 221 3789999999
Q ss_pred HHHHHHHHHHHHHhcCccEEEEecccccccCCCccccccccCccccCCccccCCCCCChHHHHHHHcC--Cccccceeee
Q 003901 392 RQFIVDCLRYWVTEMHVDGFRFDLASIMTRGSSLWDSVNVYGIPIEGDLLTTGTPLRSPPLIDLISND--PILRGVKLIA 469 (788)
Q Consensus 392 r~~i~d~l~~W~~e~gVDGFR~D~a~~l~~~~~~w~~~~~~g~~~~~~~~~~g~~~~~~~~~~~i~~~--~~~~~~~lig 469 (788)
|..|++.|.+.+ ++||-|||.|+++||.... -..+++ -+..+..| |.....+++-
T Consensus 194 r~Kive~L~hLi-dlGVAGFRvDAsKHMwp~D----i~~I~~------------------~l~nLnsD~f~s~srpfi~q 250 (504)
T KOG2212|consen 194 RSKIAEYLNHLI-DIGVAGFRVDASKHMWPGD----IKAILD------------------KLHNLNSDWFPSGSKPFIYQ 250 (504)
T ss_pred HHHHHHHHHHHH-HhccceeeechhhccChHH----HHHHHH------------------HHhhcccccccCCCCceehh
Confidence 999999999999 9999999999999995310 000110 01111222 2223456666
Q ss_pred eeccCCC-cccccccCCCCcccccchhHHHHHHHHHhCCCCcHHHHHHHHhCCCCccCCCCCCCCcceeecccCCCcchh
Q 003901 470 EAWDTGG-LYQVGIFPHWGIWSEWNGKYRDIVRQFIKGTDGFAGAFAECLCGSPNLYQGGGRKPWNSINFVCAHDGFSLA 548 (788)
Q Consensus 470 E~w~~~~-~~~~~~~~~~~~~~~~n~~f~~~lr~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~p~~~vnfv~nHD~~rl~ 548 (788)
|..+.++ ....+.+ .+..+.-+..|...+-..+++.... ..|..-..-+ +.....++++||+|||+.|-.
T Consensus 251 EVID~GgE~v~~~dY--~g~G~~TeF~f~~~ig~~~r~~~~~-----kyL~nwG~~w--Gf~~s~~~L~FvDNHDNQR~~ 321 (504)
T KOG2212|consen 251 EVIDLGGEPIKSSDY--FGNGRVTEFKFGAKLGTVIRKWNKM-----KYLKNWGEGW--GFMPSDRALVFVDNHDNQRGH 321 (504)
T ss_pred hhhhcCCceeecccc--cCCceeeeeechHHHHHHHhcchhH-----HHHHhcCCcc--CcCCCcceEEEeccCcccccC
Confidence 7666553 2222222 2223344556888888888876421 2222111111 123345789999999998732
Q ss_pred h-----hhhhcccccccCCCCCCCCCCCCCCCCcCCCCcchhHHHHHHHHHHHHHHHHHHHhcC-CceEEecccccccCC
Q 003901 549 D-----LVSYNQKHNLANGEDNNDGETHNNSWNCGQEGEFANILVKKLRRRQMRNFFLCLMVSQ-GVPMISMGDEYGHTK 622 (788)
Q Consensus 549 d-----~~~~~~~~n~~~g~~~~dg~~~~~sw~~g~~~~~~~~~~~~~~~~~~r~a~alllt~p-GiP~Iy~GdE~G~~~ 622 (788)
. .++|. ..++.++|.+++|..| |+|-+..---|--+.
T Consensus 322 gagga~VltYK-------------------------------------~~~~YkmA~~FmLA~PyG~~RVMSSFaF~~~D 364 (504)
T KOG2212|consen 322 GAGGASVLTYK-------------------------------------DARLYKMAVGFMLAHPYGFTRVMSSFAFDVND 364 (504)
T ss_pred CCCcceEEEec-------------------------------------chhhhhhhhhhheecccCcchhheeeeeecCC
Confidence 2 12111 1467899999999999 999887655444433
Q ss_pred CCC--CCCc-------CCCCCccccccCcccCcchHHHHHHHHHHHHHhhCccCCCCCCCCccceeeccCCCCCCCCCCC
Q 003901 623 GGN--NNTY-------CHDNDINYFRWDKKEESKSDFFRFCCLLTKFRHECESLGLSDFPTADRLQWHGHAPGLPDWSDK 693 (788)
Q Consensus 623 ~g~--~n~y-------~~~~~~~~~~W~~~~~~~~~l~~~~r~Li~lRk~~~aL~~g~~~~~~~~~~~~~~~~~~~~~~~ 693 (788)
.+. ++.+ +.| ...---|--..+ ...++.|.+||..- +...+.. -|+..
T Consensus 365 ~~PP~~~~~~i~SP~Fn~D-~tC~~GWvCEHR-----WrqI~~Mv~FrnAV---~~t~~~~--------------w~d~g 421 (504)
T KOG2212|consen 365 WVPPPNNNGVIKSPTFNPD-TTCGNGWVCEHR-----WRQIRNMVNFRNAV---DGTPFTN--------------WYDNG 421 (504)
T ss_pred CCCCCCCCcceecceeCCC-CcccCceeeech-----HHHHHHHHhhhhhc---CCccccc--------------eeeCC
Confidence 222 1111 111 111112332221 34678899999753 2222111 14556
Q ss_pred CcEEEEEEEcCCCCEEEEEEeCCCCcEEEECCC-CCCCCeEEEecCCC
Q 003901 694 SRFVAFTLIDSVKGEIYVAFNASHLPVIISLPK-RPGYRWEPLVDTSK 740 (788)
Q Consensus 694 ~~vlaf~r~~~~~~~i~Vv~N~~~~~~~v~Lp~-~~g~~w~~l~d~~~ 740 (788)
++.++|.|.... ++++|..+...+..|.+ .|.+.|++++..+.
T Consensus 422 ~nqIaF~Rg~kG----F~A~Nn~~~d~s~~l~T~LPAGtYCDviSG~~ 465 (504)
T KOG2212|consen 422 SNQIAFGRGNRG----FIAFNNDDWDFSLTLQTGLPAGTYCDVISGDK 465 (504)
T ss_pred CcEEEEecCCcc----EEEEeCcchhHHHHHhcCCCCCceeeeecccc
Confidence 899999997655 89999988665555544 34459999997655
No 39
>smart00642 Aamy Alpha-amylase domain.
Probab=99.84 E-value=3.8e-21 Score=187.76 Aligned_cols=95 Identities=34% Similarity=0.504 Sum_probs=84.4
Q ss_pred EEeccCcccCCCCCCCCCcCHHHHHhhhHHHHHcCCCeEEECcccccCccCcccCCCCCCCcccCCCCC--CCCCCCcHH
Q 003901 243 EVHVRGFTRHESSKTEHPGTYLGVVEKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYNYSSAGI--RNCGHDAIN 320 (788)
Q Consensus 243 ei~v~~Ft~~~~s~~~~~G~~~gl~~~L~yLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~wgY~~~~~--~~~~~G~~~ 320 (788)
||++++|.+++.++ .|||++++++|+|||+||||+|||+|++++... ...+|+|++.+| ++++||+++
T Consensus 1 qi~~~~F~~~~~~~---~G~~~gi~~~l~yl~~lG~~~I~l~Pi~~~~~~-------~~~~~gY~~~d~~~i~~~~Gt~~ 70 (166)
T smart00642 1 QIYPDRFADGNGDG---GGDLQGIIEKLDYLKDLGVTAIWLSPIFESPQG-------YPSYHGYDISDYKQIDPRFGTME 70 (166)
T ss_pred CeeeccccCCCCCC---CcCHHHHHHHHHHHHHCCCCEEEECcceeCCCC-------CCCCCCcCccccCCCCcccCCHH
Confidence 57899999966544 799999999999999999999999999997532 124579999988 889999999
Q ss_pred HHHHHHHHHHHcCCEEEEEeeeccccC
Q 003901 321 EFKLLVREAHKRGIEVVMDVVFNHTVE 347 (788)
Q Consensus 321 elk~lV~~aH~~Gi~VilDvV~NH~~~ 347 (788)
||++||++||++||+||+|+|+||++.
T Consensus 71 d~~~lv~~~h~~Gi~vilD~V~NH~~~ 97 (166)
T smart00642 71 DFKELVDAAHARGIKVILDVVINHTSD 97 (166)
T ss_pred HHHHHHHHHHHCCCEEEEEECCCCCCC
Confidence 999999999999999999999999974
No 40
>PF14872 GHL5: Hypothetical glycoside hydrolase 5
Probab=99.80 E-value=4.4e-17 Score=178.99 Aligned_cols=279 Identities=22% Similarity=0.376 Sum_probs=173.2
Q ss_pred CCCcEEeCCc-EEEEEEcCCCC-------EEEEEEEeCCC---ccCCce-----eeEEecccccCCCCCEEEEEEcCCC-
Q 003901 97 PFGATLRDGG-VNFSIFSSNAV-------SATLCLITLSD---LQENKV-----TEEIALDSFANKTGDVWHVFLKGDF- 159 (788)
Q Consensus 97 ~lGa~~~~~~-~~F~vwap~A~-------~V~L~l~~~~d---~~~~~~-----~~~~~l~~~~~~~~gvW~~~i~~~~- 159 (788)
.||||+.++| |.|..|.|.-. .|.|.+|++-+ +..... ...+||. +.|..-+..+.|..
T Consensus 27 rLGAh~~~dGlteiGFWtPel~~~~i~~~~i~LEVftP~~~ID~~~~~q~v~f~R~~~~L~----~qgey~WgVv~Glra 102 (811)
T PF14872_consen 27 RLGAHYRPDGLTEIGFWTPELAGDVIQPRDIYLEVFTPLEPIDPRAPEQTVRFRRDRLPLE----RQGEYHWGVVAGLRA 102 (811)
T ss_pred HhcCccCCCCceEEeeccchhhhhhccccceEEEEecCCCCCCCcCCCceeEEEEEEEeec----cccceeeehhhccCC
Confidence 6999999877 89999999654 99999998643 221111 1233442 23333333455533
Q ss_pred -----CCceeeEEEcCCcCCCCCcccCCcccccCcccceeeecccccCCCCCCCCCCcceecccCCCC-C-CCC-----C
Q 003901 160 -----KDMLYGYKFDGKFSPQEGHYFDPTKIVLDPYAKAVISRAQFGVLGPDENCWPQMACLVPTPED-E-FDW-----E 227 (788)
Q Consensus 160 -----~~~~Y~y~~~g~~~~~~g~~~~~~~~~~DPya~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~W-----~ 227 (788)
-|.+|--+.... .| .-+++.||.|.++ +||+.+|..-. . +..+-....+ . |.= .
T Consensus 103 Gtr~q~GsfYwLry~d~----~~----~~~~I~DpLaySl----PyGvfaPAElY-D-l~~lq~~RaD~~Yf~~~~a~~~ 168 (811)
T PF14872_consen 103 GTRDQAGSFYWLRYRDQ----DG----EVQIIRDPLAYSL----PYGVFAPAELY-D-LERLQRRRADLDYFEATGAADP 168 (811)
T ss_pred CCcccccceEEEEEccC----CC----CeEEecccccccC----cccccChHHhh-c-hHhHhhhhhhHHHHHhhccccC
Confidence 355675443211 12 2357899999887 78888775210 0 1111000000 0 000 0
Q ss_pred CCCCCCCCCCCeEEEEEeccCcccCCCCCCCCCcCHHHHHhhhHHHHH---------------cCCCeEEECcccccC--
Q 003901 228 GDLPLKYPQRDLIIYEVHVRGFTRHESSKTEHPGTYLGVVEKLDHLKD---------------LGINCLELMPCHEFN-- 290 (788)
Q Consensus 228 ~~~~~~~~~~~~viYei~v~~Ft~~~~s~~~~~G~~~gl~~~L~yLk~---------------LGvt~I~L~Pi~~~~-- 290 (788)
.+.+++.+ ....|-||||..-+. .||++|+++....|.+ .|+++|+||||-...
T Consensus 169 ~~~~~rv~-~P~nILQiHv~TAsp--------~GtlaGLT~iyqria~K~~~g~pLtp~E~ny~GYDAvQLLPiEPtiey 239 (811)
T PF14872_consen 169 SDGIPRVP-APRNILQIHVGTASP--------EGTLAGLTRIYQRIADKLAAGEPLTPAEENYVGYDAVQLLPIEPTIEY 239 (811)
T ss_pred CCCCcccC-CCceeEEEecCCCCC--------CcchHHHHHHHHHHHHHHhcCCCCChhHHhcccccceeeeccCCccee
Confidence 12233322 356899999997655 6999999986555543 699999999995421
Q ss_pred -c-----cCccc--------------------------CCCCCCCcccCCCCC----CCC---CCCcHHHHHHHHHHHHH
Q 003901 291 -E-----LEYFS--------------------------YNSVLGDYNYSSAGI----RNC---GHDAINEFKLLVREAHK 331 (788)
Q Consensus 291 -~-----~~~~~--------------------------~~~~~~~wgY~~~~~----~~~---~~G~~~elk~lV~~aH~ 331 (788)
. .+.+. ..+..-.|||++.-+ .+| .-++++||-+||+.+|.
T Consensus 240 r~e~~~~h~Ff~~~~~d~~~~~~~~~~~~~~~~v~v~L~kPdtqNWGYDv~I~GsaAtNPalL~TlRPDElVdfiatLHn 319 (811)
T PF14872_consen 240 RAENEPGHEFFSIRPEDEDELDPETEGVHEDGDVTVTLRKPDTQNWGYDVVILGSAATNPALLETLRPDELVDFIATLHN 319 (811)
T ss_pred ccccCCCCceeeecccccccccccccccccCceEEEEecCCCccccCcceeeeccCCCCHHHHhcCCcHHHHHHHHHHhc
Confidence 1 00010 011233489987622 333 34689999999999996
Q ss_pred ---cCCEEEEEeeeccccCCCCCCCccccCCCCCccceeeCCCCCcccCCCCccccCCCCHHHHHHHHHHHHHHHHhcCc
Q 003901 332 ---RGIEVVMDVVFNHTVEGNDKGPILSFRGVDNSVYYMLAPKGEFYNYSGCGNTFNCNHPVVRQFIVDCLRYWVTEMHV 408 (788)
Q Consensus 332 ---~Gi~VilDvV~NH~~~~~~~~~~~~~~~~~~~~yy~~~~~g~~~~~~g~~~dln~~~p~vr~~i~d~l~~W~~e~gV 408 (788)
..|+||+|+||.|.-..... .+ +..|+. .| .-.|-++|+.+|.||..+++.-+.=+ ++|+
T Consensus 320 Fp~gPIqvIyDlVyGHADNQ~~~--LL------n~~flk-GP-------nMYGQdlnhq~P~VRAILLEmQRRK~-n~Ga 382 (811)
T PF14872_consen 320 FPTGPIQVIYDLVYGHADNQALD--LL------NRRFLK-GP-------NMYGQDLNHQNPVVRAILLEMQRRKI-NTGA 382 (811)
T ss_pred CCCCCeEEEEeeecccccchhhH--hh------hhhhcc-CC-------ccccccccccChHHHHHHHHHHHhhc-ccCC
Confidence 68999999999998544321 11 111211 11 11267999999999999999988888 8999
Q ss_pred cEEEEeccccc
Q 003901 409 DGFRFDLASIM 419 (788)
Q Consensus 409 DGFR~D~a~~l 419 (788)
||+|+|-+...
T Consensus 383 DGIRVDGgQDF 393 (811)
T PF14872_consen 383 DGIRVDGGQDF 393 (811)
T ss_pred ceeEecccccc
Confidence 99999988644
No 41
>cd02852 Isoamylase_N_term Isoamylase N-terminus domain. Isoamylase (aka glycogen 6-glucanohydrolase) is one of the starch-debranching enzymes that catalyzes the hydrolysis of alpha-1,6-glucosidic linkages specific in alpha-glucans such as amylopectin or glycogen. Isoamylase contains a bound calcium ion, but this is not in the same position as the conserved calcium ion that has been reported in other alpha-amylase family enzymes. The N-terminus of isoamylase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=99.76 E-value=4.1e-18 Score=157.72 Aligned_cols=101 Identities=53% Similarity=0.938 Sum_probs=86.6
Q ss_pred CcEEeCCcEEEEEEcCCCCEEEEEEEeCCCccCCceeeEEecccccCCCCCEEEEEEcCCCCCceeeEEEcCCcCCCCCc
Q 003901 99 GATLRDGGVNFSIFSSNAVSATLCLITLSDLQENKVTEEIALDSFANKTGDVWHVFLKGDFKDMLYGYKFDGKFSPQEGH 178 (788)
Q Consensus 99 Ga~~~~~~~~F~vwap~A~~V~L~l~~~~d~~~~~~~~~~~l~~~~~~~~gvW~~~i~~~~~~~~Y~y~~~g~~~~~~g~ 178 (788)
||++.+++++|+||||+|++|+|+||+..+ ...+...++|.+..++.+|+|+++|+++.+|.+|.|+|+|...|..|.
T Consensus 1 Ga~~~~~g~~F~vwAP~A~~V~L~lf~~~~--~~~~~~~~~m~~~~~~~~gvW~~~v~~~~~g~~Y~y~v~g~~~p~~g~ 78 (119)
T cd02852 1 GATIDAGGVNFSVYSSNATAVELLLFDPGD--GDEPALEIELDPSVNRTGDVWHVFVEGLKPGQLYGYRVDGPFEPEQGH 78 (119)
T ss_pred CCeEeCCCEEEEEECCCCCEEEEEEEeCCC--CCCceEEEeCcCcccccCCEEEEEECCCCCCCEEEEEECCCCCCCccc
Confidence 899999999999999999999999997543 122344678876555678999999999999999999999988888999
Q ss_pred ccCCcccccCcccceeeeccccc
Q 003901 179 YFDPTKIVLDPYAKAVISRAQFG 201 (788)
Q Consensus 179 ~~~~~~~~~DPya~~~~~~~~~~ 201 (788)
+++++++++||||+++..+..|+
T Consensus 79 ~~~~~~~~~DPYA~a~~~~~~~~ 101 (119)
T cd02852 79 RFDPSKVLLDPYAKAVSGDEYFG 101 (119)
T ss_pred ccCCCcEEECCCcCeEcCccccC
Confidence 99999999999999997776555
No 42
>cd02856 Glycogen_debranching_enzyme_N_term Glycogen_debranching_enzyme N-terminal domain. Glycogen debranching enzymes have both 4-alpha-glucanotransferase and amylo-1,6-glucosidase activities. As a transferase it transfers a segment of a 1,4-alpha-D-glucan to a new 4-position in an acceptor, which may be glucose or another 1,4-alpha-D-glucan. As a glucosidase it catalyzes the endohydrolysis of 1,6-alpha-D-glucoside linkages at points of branching in chains of 1,4-linked alpha-D-glucose residues. The N-terminus of the glycogen debranching enzyme may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=99.74 E-value=1.3e-17 Score=150.06 Aligned_cols=97 Identities=37% Similarity=0.742 Sum_probs=82.7
Q ss_pred CCCcEEeCCcEEEEEEcCCCCEEEEEEEeCCCccCCceeeEEecccccCCCCCEEEEEEcCCCCCceeeEEEcCCcCCCC
Q 003901 97 PFGATLRDGGVNFSIFSSNAVSATLCLITLSDLQENKVTEEIALDSFANKTGDVWHVFLKGDFKDMLYGYKFDGKFSPQE 176 (788)
Q Consensus 97 ~lGa~~~~~~~~F~vwap~A~~V~L~l~~~~d~~~~~~~~~~~l~~~~~~~~gvW~~~i~~~~~~~~Y~y~~~g~~~~~~ 176 (788)
||||++.+++++|+||||+|++|+|+||+..+ . ...++|. +..+|+|+++|++..+|.+|.|+|+|.+.|..
T Consensus 1 plGa~~~~~g~~F~vwAP~A~~V~L~l~~~~~----~-~~~~~m~---~~~~GvW~~~v~~~~~g~~Y~y~i~g~~~p~~ 72 (103)
T cd02856 1 PLGATLDGEGCNFAVHSENATRIELCLFDEDG----S-ETRLPLT---EEYGGVWHGFLPGIKAGQRYGFRVHGPYDPER 72 (103)
T ss_pred CCccEEeCCCeEEEEECCCCCEEEEEEEeCCC----C-EEEEEcc---cccCCEEEEEECCCCCCCEEEEEECCccCccc
Confidence 69999999999999999999999999997432 1 2356774 34689999999999999999999999888889
Q ss_pred CcccCCcccccCcccceeeeccccc
Q 003901 177 GHYFDPTKIVLDPYAKAVISRAQFG 201 (788)
Q Consensus 177 g~~~~~~~~~~DPya~~~~~~~~~~ 201 (788)
|.++++.++++||||++++.+..|+
T Consensus 73 ~~~~~~~~~~~DPYA~~~~~~~~~~ 97 (103)
T cd02856 73 GLRFNPAKLLLDPYARALDGPLAYH 97 (103)
T ss_pred CcccCCCeEEecCCcceEcCCccCC
Confidence 9988988899999999997665443
No 43
>cd02860 Pullulanase_N_term Pullulanase domain N-terminus. Pullulanase (AKA dextrinase; alpha-dextrin endo-1,6-alpha glucosidase) is an enzyme with action similar to that of isoamylase; it cleaves 1,6-alpha-glucosidic linkages in pullulan, amylopectin, and glycogen, and in alpha-and beta-amylase limit-dextrins of amylopectin and glycogen. The N-terminus of pullulanase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=99.66 E-value=3e-16 Score=140.53 Aligned_cols=94 Identities=30% Similarity=0.433 Sum_probs=75.9
Q ss_pred CCcEEeCCcEEEEEEcCCCCEEEEEEEeCCCccCCceeeEEecccccCCCCCEEEEEEcCCCCCceeeEEEcCCcCCCCC
Q 003901 98 FGATLRDGGVNFSIFSSNAVSATLCLITLSDLQENKVTEEIALDSFANKTGDVWHVFLKGDFKDMLYGYKFDGKFSPQEG 177 (788)
Q Consensus 98 lGa~~~~~~~~F~vwap~A~~V~L~l~~~~d~~~~~~~~~~~l~~~~~~~~gvW~~~i~~~~~~~~Y~y~~~g~~~~~~g 177 (788)
|||++.+++++|+||||+|++|+|+||+..+. ..+..+++|.+ +.+|+|+++|+++.+|.+|+|+|++.
T Consensus 1 lGa~~~~~~~~F~vwAP~A~~V~L~l~~~~~~--~~~~~~~~m~~---~~~gvw~~~v~~~~~g~~Y~y~i~~~------ 69 (100)
T cd02860 1 LGAVYTPEKTTFRLWAPTAQSVKLLLYDKDDQ--DKVLETVQMKR---GENGVWSVTLDGDLEGYYYLYEVKVY------ 69 (100)
T ss_pred CCCEEeCCCEEEEEECCCCcEEEEEEEcCCCC--CCcceeEeeec---CCCCEEEEEeCCccCCcEEEEEEEEe------
Confidence 79999999999999999999999999975321 12234678853 57899999999999999999999864
Q ss_pred cccCCcccccCcccceeeecccccCCC
Q 003901 178 HYFDPTKIVLDPYAKAVISRAQFGVLG 204 (788)
Q Consensus 178 ~~~~~~~~~~DPya~~~~~~~~~~~~~ 204 (788)
++....++||||+++..++.+|++.
T Consensus 70 --~~~~~~~~DPyA~~~~~~~~~s~i~ 94 (100)
T cd02860 70 --KGETNEVVDPYAKALSANGERSVDL 94 (100)
T ss_pred --ceEEEEEcCcccEeEeeCCCceEEC
Confidence 1234578999999999888776543
No 44
>PRK14507 putative bifunctional 4-alpha-glucanotransferase/malto-oligosyltrehalose synthase; Provisional
Probab=99.53 E-value=1.9e-14 Score=178.88 Aligned_cols=89 Identities=18% Similarity=0.168 Sum_probs=79.3
Q ss_pred eEEEEEeccCcccCCCCCCCCCcCHHHHHhhhHHHHHcCCCeEEECcccccCccCcccCCCCCCCcccCCCCC--CCCCC
Q 003901 239 LIIYEVHVRGFTRHESSKTEHPGTYLGVVEKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYNYSSAGI--RNCGH 316 (788)
Q Consensus 239 ~viYei~v~~Ft~~~~s~~~~~G~~~gl~~~L~yLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~wgY~~~~~--~~~~~ 316 (788)
..+|-+.... .++|.+++++|+||++|||++|||+||+++.. ..+|||++.++ ++|.+
T Consensus 744 ~atyrlq~~~-----------~~tf~~~~~~l~Yl~~LGv~~i~lsPi~~a~~---------gs~hGYdv~D~~~idp~l 803 (1693)
T PRK14507 744 RATYRLQFHK-----------DFTFADAEAILPYLAALGISHVYASPILKARP---------GSTHGYDIVDHSQINPEI 803 (1693)
T ss_pred ceeEEEEeCC-----------CCCHHHHHHHhHHHHHcCCCEEEECCCcCCCC---------CCCCCCCCCCCCccCccc
Confidence 4578877654 58999999999999999999999999998532 13479999988 89999
Q ss_pred CcHHHHHHHHHHHHHcCCEEEEEeeeccccC
Q 003901 317 DAINEFKLLVREAHKRGIEVVMDVVFNHTVE 347 (788)
Q Consensus 317 G~~~elk~lV~~aH~~Gi~VilDvV~NH~~~ 347 (788)
|+.++|++||++||++||+||||+|+||++.
T Consensus 804 G~~edf~~Lv~~ah~~Gi~vilDiV~NH~~~ 834 (1693)
T PRK14507 804 GGEEGFERFCAALKAHGLGQLLDIVPNHMGV 834 (1693)
T ss_pred CCHHHHHHHHHHHHHCCCEEEEEecccccCC
Confidence 9999999999999999999999999999984
No 45
>PF02922 CBM_48: Carbohydrate-binding module 48 (Isoamylase N-terminal domain); InterPro: IPR004193 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. This domain is found in a range of enzymes that act on branched substrates ie. isoamylase, pullulanase and branching enzyme. Isoamylase hydrolyses 1,6-alpha-D-glucosidic branch linkages in glycogen, amylopectin and dextrin; 1,4-alpha-glucan branching enzyme functions in the formation of 1,6-glucosidic linkages of glycogen; and pullulanase is a starch-debranching enzyme.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 2BHZ_A 2BY2_A 2BY3_A 2BXY_A 2BY1_A 2BHY_A 2BHU_A 2BXZ_A 2BY0_A 2FHB_A ....
Probab=99.46 E-value=1.2e-13 Score=119.91 Aligned_cols=81 Identities=36% Similarity=0.662 Sum_probs=60.6
Q ss_pred CCCcEEeCC--cEEEEEEcCCCCEEEEEEEeCCCccCCceeeEEecccccCCCCCEEEEEEcCCCC-C-ceeeEEEcCCc
Q 003901 97 PFGATLRDG--GVNFSIFSSNAVSATLCLITLSDLQENKVTEEIALDSFANKTGDVWHVFLKGDFK-D-MLYGYKFDGKF 172 (788)
Q Consensus 97 ~lGa~~~~~--~~~F~vwap~A~~V~L~l~~~~d~~~~~~~~~~~l~~~~~~~~gvW~~~i~~~~~-~-~~Y~y~~~g~~ 172 (788)
||||++.++ +++|+||||+|++|+|+++..+ . .....++|.. ...+|+|+++|+++.+ | .+|.|+|++.
T Consensus 1 plG~~~~~~~~~~~F~vwaP~A~~V~l~~~~~~---~-~~~~~~~m~~--~~~~G~w~~~~~~~~~~g~~~Y~y~i~~~- 73 (85)
T PF02922_consen 1 PLGAHYTEDGGGVTFRVWAPNAKSVELVLYFNG---S-WPAEEYPMTR--KDDDGVWEVTVPGDLPPGGYYYKYRIDGD- 73 (85)
T ss_dssp SSEEEEESSCTEEEEEEE-TTESEEEEEEETTT---S-SEEEEEEEEE--ECTTTEEEEEEEGCGTTTT-EEEEEEEET-
T ss_pred CcCcEEECCCCEEEEEEECCCCCEEEEEEEeee---c-CCCceEEeee--cCCCCEEEEEEcCCcCCCCEEEEEEEEeC-
Confidence 799999986 9999999999999999998654 1 2356788853 3578999999996544 5 6999999865
Q ss_pred CCCCCcccCCcccccCccc
Q 003901 173 SPQEGHYFDPTKIVLDPYA 191 (788)
Q Consensus 173 ~~~~g~~~~~~~~~~DPya 191 (788)
.| ....++||||
T Consensus 74 ---~g----~~~~~~DPYA 85 (85)
T PF02922_consen 74 ---DG----ETPEVVDPYA 85 (85)
T ss_dssp ---TT----EEEEET-TT-
T ss_pred ---CC----cEEEEeCCCC
Confidence 22 2346799997
No 46
>cd02853 MTHase_N_term Maltooligosyl trehalose synthase (MTSase) N-terminus domain. MTSase and maltooligosyl trehalose trehalohydrolase (MTHase) work together to produce trehalose. MTSase is responsible for converting the alpha-1,4-glucosidic linkage to an alpha,alpha-1,1-glucosidic linkage at the reducing end of the maltooligosaccharide through an intramolecular transglucosylation reaction, while MTHase hydrolyzes the penultimate alpha-1,4 linkage of the reducing end, resulting in the release of trehalose. The N-terminus of MTSase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=99.31 E-value=5.7e-12 Score=109.21 Aligned_cols=71 Identities=27% Similarity=0.419 Sum_probs=58.5
Q ss_pred CcEEeC-CcEEEEEEcCCCCEEEEEEEeCCCccCCceeeEEecccccCCCCCEEEEEEcCCCCCceeeEEEcCCcCCCCC
Q 003901 99 GATLRD-GGVNFSIFSSNAVSATLCLITLSDLQENKVTEEIALDSFANKTGDVWHVFLKGDFKDMLYGYKFDGKFSPQEG 177 (788)
Q Consensus 99 Ga~~~~-~~~~F~vwap~A~~V~L~l~~~~d~~~~~~~~~~~l~~~~~~~~gvW~~~i~~~~~~~~Y~y~~~g~~~~~~g 177 (788)
||++.+ ++++|+||||+|++|+|+|+. + ..++|. ..++|+|+++++++ +|.+|.|+|++.
T Consensus 1 Ga~~~~~~~~~F~vwAP~A~~V~l~l~~------~---~~~~m~---~~~~G~W~~~v~~~-~g~~Y~y~v~~~------ 61 (85)
T cd02853 1 GARPLGAGGTRFRLWAPDAKRVTLRLDD------G---EEIPMQ---RDGDGWFEAEVPGA-AGTRYRYRLDDG------ 61 (85)
T ss_pred CCeEcCCCCEEEEEeCCCCCEEEEEecC------C---CcccCc---cCCCcEEEEEeCCC-CCCeEEEEECCC------
Confidence 789887 899999999999999999874 1 135663 35679999999999 999999999732
Q ss_pred cccCCcccccCccccee
Q 003901 178 HYFDPTKIVLDPYAKAV 194 (788)
Q Consensus 178 ~~~~~~~~~~DPya~~~ 194 (788)
..+.||||+++
T Consensus 62 ------~~~~DP~a~~~ 72 (85)
T cd02853 62 ------TPVPDPASRFQ 72 (85)
T ss_pred ------cCCCCCccccC
Confidence 23689999986
No 47
>COG3280 TreY Maltooligosyl trehalose synthase [Carbohydrate transport and metabolism]
Probab=99.25 E-value=7.4e-12 Score=140.77 Aligned_cols=80 Identities=28% Similarity=0.308 Sum_probs=72.7
Q ss_pred CcCHHHHHhhhHHHHHcCCCeEEECcccccCccCcccCCCCCCCcccCCCCC--CCCCCCcHHHHHHHHHHHHHcCCEEE
Q 003901 260 PGTYLGVVEKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYNYSSAGI--RNCGHDAINEFKLLVREAHKRGIEVV 337 (788)
Q Consensus 260 ~G~~~gl~~~L~yLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~wgY~~~~~--~~~~~G~~~elk~lV~~aH~~Gi~Vi 337 (788)
+=||....+.|||||+|||.|+|++|||.... -+.+||++.|. ++|.+|+.+.|..||+++|++||.+|
T Consensus 15 gFtF~~A~~~l~yl~~LGIShLY~SPIftA~p---------GStHGYDVvD~t~InPeLGG~egl~rLvaalk~~GlGlI 85 (889)
T COG3280 15 GFTFADARALLDYLADLGISHLYLSPIFTARP---------GSTHGYDVVDPTEINPELGGEEGLERLVAALKSRGLGLI 85 (889)
T ss_pred CCCHHHHHHhhHHHHhcCchheeccchhhcCC---------CCCCCccCCCccccChhhcChHHHHHHHHHHHhcCCceE
Confidence 45799999999999999999999999999753 22368999887 99999999999999999999999999
Q ss_pred EEeeeccccCC
Q 003901 338 MDVVFNHTVEG 348 (788)
Q Consensus 338 lDvV~NH~~~~ 348 (788)
+|+|+|||+.+
T Consensus 86 ~DIVPNHMav~ 96 (889)
T COG3280 86 VDIVPNHMAVG 96 (889)
T ss_pred EEecccchhcc
Confidence 99999999876
No 48
>TIGR01531 glyc_debranch glycogen debranching enzymye. glycogen debranching enzyme possesses two different catalytic activities; oligo-1,4--1,4-glucantransferase (EC 2.4.1.25) and amylo-1,6-glucosidase (EC 3.2.1.33). Site directed mutagenesis studies in S. cerevisiae indicate that the transferase and glucosidase activities are independent and located in different regions of the polypeptide chain. Proteins in this model belong to the larger alpha-amylase family. The model covers eukaryotic proteins with a seed composed of human, nematode and yeast sequences. Yeast seed sequence is well characterized. The model is quite rigorous; either query sequence yields large bit score or it fails to hit the model altogether. There doesn't appear to be any middle ground.
Probab=99.24 E-value=1.1e-11 Score=150.10 Aligned_cols=83 Identities=25% Similarity=0.333 Sum_probs=73.2
Q ss_pred CCcCHHHHHhhhHHHHHcCCCeEEECcccccCccCcccCCCCCCCcccCCCCC--CCCCC----CcHHHHHHHHHHHHHc
Q 003901 259 HPGTYLGVVEKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYNYSSAGI--RNCGH----DAINEFKLLVREAHKR 332 (788)
Q Consensus 259 ~~G~~~gl~~~L~yLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~wgY~~~~~--~~~~~----G~~~elk~lV~~aH~~ 332 (788)
..|+|.++.++|+|||+||+|.|||+||++.... ...|+..|+ ++|.+ |+.+||++||+++|++
T Consensus 127 ~mG~~~~w~~~L~~ik~lGyN~IhftPI~~~G~S----------nS~Ysi~Dyl~idP~~~~~~~~~~d~~~lV~~~h~~ 196 (1464)
T TIGR01531 127 LLGPLSEWEPRLRVAKEKGYNMIHFTPLQELGGS----------NSCYSLYDQLQLNQHFKSQKDGKNDVQALVEKLHRD 196 (1464)
T ss_pred hcCCHHHHHHHHHHHHHcCCCEEEeCCCccCCCC----------CCCccccchhhcChhhcccCCcHHHHHHHHHHHHHh
Confidence 3799999999999999999999999999975421 136888887 88888 5899999999999997
Q ss_pred -CCEEEEEeeeccccCCCCC
Q 003901 333 -GIEVVMDVVFNHTVEGNDK 351 (788)
Q Consensus 333 -Gi~VilDvV~NH~~~~~~~ 351 (788)
||+||+|+|+|||+.+++|
T Consensus 197 ~Gm~~ilDvV~NHTa~ds~W 216 (1464)
T TIGR01531 197 WNVLSITDIVFNHTANNSPW 216 (1464)
T ss_pred cCCEEEEEeeecccccCCHH
Confidence 9999999999999998765
No 49
>cd02854 Glycogen_branching_enzyme_like_N_term Glycogen branching enzyme-like N-terminus domain. Glycogen branching enzyme (AKA 1,4 alpha glucan branching enzyme) catalyzes the formation of alpha-1,6 branch points in either glycogen or starch by cleavage of the alpha-1,4 glucosidic linkage yielding a non-reducing end oligosaccharide chain and subsequent attachment to the alpha-1,6 position. By increasing the number of non-reducing ends glycogen is more reactive to synthesis and digestion as well as being more soluble. The N-terminus of the glycogen branching enzyme-like proteins may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobi
Probab=99.20 E-value=3.6e-11 Score=106.73 Aligned_cols=79 Identities=18% Similarity=0.278 Sum_probs=62.1
Q ss_pred eCCcEEEEEEcCCCCEEEEEEEeCCCccCCceeeEEecccccCCCCCEEEEEEcCC-------CCCceeeEEEcCCcCCC
Q 003901 103 RDGGVNFSIFSSNAVSATLCLITLSDLQENKVTEEIALDSFANKTGDVWHVFLKGD-------FKDMLYGYKFDGKFSPQ 175 (788)
Q Consensus 103 ~~~~~~F~vwap~A~~V~L~l~~~~d~~~~~~~~~~~l~~~~~~~~gvW~~~i~~~-------~~~~~Y~y~~~g~~~~~ 175 (788)
.+++++|+||||+|++|+|+ |||++|.. ..++|.+ ...|+|+++||++ .+|.+|+|+|...
T Consensus 3 ~~~g~~FrvwAP~A~~V~l~----GdFn~W~~-~~~~m~k---~~~G~W~~~i~~~~~~~~~~~~g~~Yky~i~~~---- 70 (99)
T cd02854 3 EDGGVTYREWAPNAEEVYLI----GDFNNWDR-NAHPLKK---DEFGVWEITIPPNEDGSPAIPHGSKIKVRMVTP---- 70 (99)
T ss_pred CCCeEEEEEECCCCCEEEEE----ccCCCCCC-cCcccEE---CCCCEEEEEECCcccccccCCCCCEEEEEEEeC----
Confidence 46789999999999999999 89998864 3456754 2579999999985 4899999999742
Q ss_pred CCcccCCcccccCcccceeeec
Q 003901 176 EGHYFDPTKIVLDPYAKAVISR 197 (788)
Q Consensus 176 ~g~~~~~~~~~~DPya~~~~~~ 197 (788)
+|... ..+||||+.+..+
T Consensus 71 ~G~~~----~~~DPyA~~~~~~ 88 (99)
T cd02854 71 SGEWI----DRIPAWIKYVTQD 88 (99)
T ss_pred CCCEE----EEcCcceeEEEeC
Confidence 34332 3689999998643
No 50
>cd02855 Glycogen_branching_enzyme_N_term Glycogen branching enzyme N-terminus domain. Glycogen branching enzyme (AKA 1,4 alpha glucan branching enzyme) catalyzes the formation of alpha-1,6 branch points in either glycogen or starch by cleavage of the alpha-1,4 glucosidic linkage yielding a non-reducing end oligosaccharide chain and subsequent attachment to the alpha-1,6 position. By increasing the number of non-reducing ends glycogen is more reactive to synthesis and digestion as well as being more soluble. The N-terminus of the 1,4 alpha glucan branching enzyme may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitina
Probab=98.91 E-value=4.5e-09 Score=95.04 Aligned_cols=86 Identities=27% Similarity=0.468 Sum_probs=62.9
Q ss_pred CCCcEEeC----CcEEEEEEcCCCCEEEEEEEeCCCccCCceeeEEecccccCCCCCEEEEEEcCCCCCceeeEEEcCCc
Q 003901 97 PFGATLRD----GGVNFSIFSSNAVSATLCLITLSDLQENKVTEEIALDSFANKTGDVWHVFLKGDFKDMLYGYKFDGKF 172 (788)
Q Consensus 97 ~lGa~~~~----~~~~F~vwap~A~~V~L~l~~~~d~~~~~~~~~~~l~~~~~~~~gvW~~~i~~~~~~~~Y~y~~~g~~ 172 (788)
.||+++.+ ++++|+||+|.|++|+|++ +++.|.. ..++|.+ ....|+|++++++...+..|.|++.+.
T Consensus 9 ~lG~~~~~~~~~~~~~frv~aP~A~~V~l~~----~~~~~~~-~~~~m~~--~~~~G~w~~~v~~~~~~~~Y~~~v~~~- 80 (106)
T cd02855 9 KLGAHPTEVDGVSGVRFAVWAPNARRVSVVG----DFNGWDG-RRHPMRR--RGDSGVWELFIPGLGEGELYKYEILGA- 80 (106)
T ss_pred hcCCEEcccCCcCCEEEEEECCCCCEEEEEE----ECCCCCC-cceecEE--CCCCCEEEEEECCCCCCCEEEEEEECC-
Confidence 69999988 8999999999999999985 2222221 1346643 223799999999888888899999742
Q ss_pred CCCCCcccCCcccccCcccceeeec
Q 003901 173 SPQEGHYFDPTKIVLDPYAKAVISR 197 (788)
Q Consensus 173 ~~~~g~~~~~~~~~~DPya~~~~~~ 197 (788)
.|.. ..+.|||++.+..+
T Consensus 81 ---~g~~----~~~~DPYa~~~~~~ 98 (106)
T cd02855 81 ---DGHL----PLKADPYAFYSELR 98 (106)
T ss_pred ---CCCE----EEeeCCCceeeEeC
Confidence 2222 24689999988543
No 51
>PF11852 DUF3372: Domain of unknown function (DUF3372); InterPro: IPR024561 This entry represents the uncharacterised C-terminal domain of secreted (or membrane-anchored) pullulanases of Gram-negative bacteria and pullulanase-type starch debranching enzymes of plants. Both enzymes hydrolyse alpha-1,6 glycosidic linkages. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. ; PDB: 2Y4S_A 2FH8_A 2FH6_A 2Y5E_A 2FHC_A 2FHB_A 2FHF_A 2FGZ_A.
Probab=98.74 E-value=1.2e-08 Score=97.89 Aligned_cols=115 Identities=15% Similarity=0.235 Sum_probs=73.4
Q ss_pred hHHHHHHHHHHHHHhhCccCCCCCCCCc-cceeeccCCCCCCCCCCCCcEEEEEEEcCC---------CCEEEEEEeCCC
Q 003901 648 SDFFRFCCLLTKFRHECESLGLSDFPTA-DRLQWHGHAPGLPDWSDKSRFVAFTLIDSV---------KGEIYVAFNASH 717 (788)
Q Consensus 648 ~~l~~~~r~Li~lRk~~~aL~~g~~~~~-~~~~~~~~~~~~~~~~~~~~vlaf~r~~~~---------~~~i~Vv~N~~~ 717 (788)
....++++.|++||+++|.|+.++-..+ +++.||..-+ ....++|++...++. -+.++||||.+.
T Consensus 41 ~~a~~~f~elL~iR~SspLFrL~ta~~I~~rv~F~n~G~-----~q~pGvIvM~idDg~~~~~dlD~~~~~iVVvfNat~ 115 (168)
T PF11852_consen 41 AAASAYFQELLRIRKSSPLFRLGTAEEIQQRVTFHNTGP-----DQTPGVIVMSIDDGAGVGADLDPNYDGIVVVFNATP 115 (168)
T ss_dssp HHHHHHHHHHHHHHCT-GGGG--SHHHHHHHEEEES-ST-----T--TTEEEEEEE-SCSSSS-S-SSEEEEEEEEE-SS
T ss_pred HHHHHHHHHHHHHhccCccccCCCHHHHHHhccccCCCC-----CCCCcEEEEEecCCCccccccCCccCeEEEEEeCCC
Confidence 3458899999999999999999886553 6788886532 345799999998732 246999999999
Q ss_pred CcEEEECCCCCCCCeEE--EecCCCCCCCCccCCCCchhhhhhhhcCCCCCCeeEEeeCCeEEEEEec
Q 003901 718 LPVIISLPKRPGYRWEP--LVDTSKPEPFDFLSSDLPAKEIAIKQYAPFLDANLYPMLSYSSIILLLS 783 (788)
Q Consensus 718 ~~~~v~Lp~~~g~~w~~--l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~~vl~~~ 783 (788)
+++++.+|...| |+. +...+. +. .+.+..-....++++|||+|++|||..
T Consensus 116 ~~~t~~~~~~~g--~~Lhpvq~~~~--------D~------~v~~a~~~~~~G~~tVPa~T~aVFv~~ 167 (168)
T PF11852_consen 116 EEQTFTVPGLAG--FQLHPVQAESS--------DP------VVKQASFDAANGTFTVPARTVAVFVQP 167 (168)
T ss_dssp S-EEEETGGGSS---EE-HHHHTGS--------GT------TGGGTEEETTTTEEEE-TTEEEEEEEE
T ss_pred CeEEEEcCCcCc--eEechHHhccc--------ch------hhhceeEecCCCeEEECCceEEEEEec
Confidence 999999998655 543 222111 01 111111112368999999999999975
No 52
>PF11941 DUF3459: Domain of unknown function (DUF3459); InterPro: IPR022567 This functionally uncharacterised domain is found in bacteria. It is about 110 amino acids in length and is found C-terminal to PF00128 from PFAM, PF02922 from PFAM. ; GO: 0033942 4-alpha-D-{(1->4)-alpha-D-glucano}trehalose trehalohydrolase activity; PDB: 2WC7_A 2WCS_A 2WKG_A 3M07_A 2PWD_A 1ZJB_A 2PWF_C 2PWE_A 2PWG_A 2PWH_A ....
Probab=98.71 E-value=3.4e-08 Score=86.37 Aligned_cols=89 Identities=22% Similarity=0.281 Sum_probs=61.7
Q ss_pred HHHHHHHHHhhCccCCCCCCCCccceeeccCCCCCCCCCCCCcEEEEEEEcCCCCEEEEEEeCCCCcEEEECCCCCCCCe
Q 003901 653 FCCLLTKFRHECESLGLSDFPTADRLQWHGHAPGLPDWSDKSRFVAFTLIDSVKGEIYVAFNASHLPVIISLPKRPGYRW 732 (788)
Q Consensus 653 ~~r~Li~lRk~~~aL~~g~~~~~~~~~~~~~~~~~~~~~~~~~vlaf~r~~~~~~~i~Vv~N~~~~~~~v~Lp~~~g~~w 732 (788)
|||+||+|||+||+|+.+++..+ .+. ......++++.|..++ +.++|++|++++++++. ....|
T Consensus 1 ~yr~Li~LRr~~PaL~~~~~~~~---~~~--------~~~~~~l~~~~r~~~~-~~l~v~~Nls~~~~~~~----~~~~~ 64 (89)
T PF11941_consen 1 FYRRLIALRRQHPALRDGDFRFL---EVE--------RDAPDALLAFRRTGGG-ERLLVAFNLSDEPVTVP----EGPWG 64 (89)
T ss_dssp HHHHHHHHHHHHTHHCCSEEEEE---EEE--------EEEETTEEEEEEEETT-EEEEEEEE-SSS-EEEE----TSCCE
T ss_pred CHHHHHHHHhhCccccCCCcccE---EEE--------ecCCCEEEEEEEEcCC-ceEEEEEecCCCcEEcc----CCCCC
Confidence 79999999999999999976542 110 1234577788876554 79999999999999888 22356
Q ss_pred EEEecCCCCCCCCccCCCCchhhhhhhhcCCCCCCeeEEeeCCeEEEE
Q 003901 733 EPLVDTSKPEPFDFLSSDLPAKEIAIKQYAPFLDANLYPMLSYSSIIL 780 (788)
Q Consensus 733 ~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~~vl 780 (788)
+.+..+..... ...++|||+|++||
T Consensus 65 ~~l~~s~~~~~-----------------------~~~~~L~p~~~~v~ 89 (89)
T PF11941_consen 65 EVLFSSEPARA-----------------------GGAGTLPPWSVVVL 89 (89)
T ss_dssp EEEEECSCSSE-------------------------EEEE-TTEEEEE
T ss_pred eEEEcCCCccc-----------------------ccCceECCCEEEEC
Confidence 77776544321 12689999999986
No 53
>cd02858 Esterase_N_term Esterase N-terminal domain. Esterases catalyze the hydrolysis of organic esters to release an alcohol or thiol and acid. The term can be applied to enzymes that hydrolyze carboxylate, phosphate and sulphate esters, but is more often restricted to the first class of substrate. The N-terminus of esterase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=98.67 E-value=6.9e-08 Score=83.55 Aligned_cols=68 Identities=21% Similarity=0.308 Sum_probs=47.7
Q ss_pred CCcEEEEEEcCCCCEEEEEEEeCCCccCCceeeEEecccccCCCCCEEEEEEcCCCCCce--eeEEEcCCcCCCCCcccC
Q 003901 104 DGGVNFSIFSSNAVSATLCLITLSDLQENKVTEEIALDSFANKTGDVWHVFLKGDFKDML--YGYKFDGKFSPQEGHYFD 181 (788)
Q Consensus 104 ~~~~~F~vwap~A~~V~L~l~~~~d~~~~~~~~~~~l~~~~~~~~gvW~~~i~~~~~~~~--Y~y~~~g~~~~~~g~~~~ 181 (788)
+++++|+||||.|++|+|+++. +.+ ..++|.+ ...|+|+++++. .++.+ |.|.++|.
T Consensus 5 ~~~v~F~vwAP~A~~V~L~~~~----~~~---~~~~m~~---~~~G~W~~~v~~-l~~g~Y~Y~~~vdg~---------- 63 (85)
T cd02858 5 DRTVTFRLFAPKANEVQVRGSW----GGA---GSHPMTK---DEAGVWSVTTGP-LAPGIYTYSFLVDGV---------- 63 (85)
T ss_pred CCcEEEEEECCCCCEEEEEeec----CCC---ccEeCeE---CCCeEEEEEECC-CCCcEEEEEEEECCe----------
Confidence 4579999999999999999754 221 2467754 346999999964 44554 55555542
Q ss_pred CcccccCcccceee
Q 003901 182 PTKIVLDPYAKAVI 195 (788)
Q Consensus 182 ~~~~~~DPya~~~~ 195 (788)
.+.||+++...
T Consensus 64 ---~~~DP~s~~~~ 74 (85)
T cd02858 64 ---RVIDPSNPTTK 74 (85)
T ss_pred ---EecCCCCCcee
Confidence 36899998763
No 54
>PRK05402 glycogen branching enzyme; Provisional
Probab=98.45 E-value=2.3e-07 Score=111.66 Aligned_cols=80 Identities=13% Similarity=0.126 Sum_probs=63.9
Q ss_pred CCCCcEEeCCcEEEEEEcCCCCEEEEEEEeCCCccCCceeeEEecccccCCCCCEEEEEEcCCCCCceeeEEEcCCcCCC
Q 003901 96 TPFGATLRDGGVNFSIFSSNAVSATLCLITLSDLQENKVTEEIALDSFANKTGDVWHVFLKGDFKDMLYGYKFDGKFSPQ 175 (788)
Q Consensus 96 ~~lGa~~~~~~~~F~vwap~A~~V~L~l~~~~d~~~~~~~~~~~l~~~~~~~~gvW~~~i~~~~~~~~Y~y~~~g~~~~~ 175 (788)
.-||||....|+.|+||||+|++|+|+ +||+. ....||.+. ...|+|+++|| ..++..|+|+|..
T Consensus 19 ~~lGah~~~~g~~f~vwaP~A~~V~vv----gdfn~---~~~~~m~~~--~~~G~w~~~ip-~~~g~~YKy~i~~----- 83 (726)
T PRK05402 19 SVLGPHPTGAGLVVRALLPGAEEVWVI----LPGGG---RKLAELERL--HPRGLFAGVLP-RKGPFDYRLRVTW----- 83 (726)
T ss_pred HhcCCCCCCCcEEEEEECCCCeEEEEE----eecCC---CccccceEc--CCCceEEEEec-CCCCCCeEEEEEe-----
Confidence 369999999999999999999999998 78874 235577542 35799999999 9999999999963
Q ss_pred CCcccCCcccccCccccee
Q 003901 176 EGHYFDPTKIVLDPYAKAV 194 (788)
Q Consensus 176 ~g~~~~~~~~~~DPya~~~ 194 (788)
+|.. ....||||...
T Consensus 84 ~g~~----~~k~DPyaf~~ 98 (726)
T PRK05402 84 GGGE----QLIDDPYRFGP 98 (726)
T ss_pred CCce----eEeccccccCC
Confidence 2332 35789999854
No 55
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=98.36 E-value=3.2e-06 Score=79.15 Aligned_cols=124 Identities=23% Similarity=0.359 Sum_probs=79.9
Q ss_pred hhhHHHHHcCCCeEEECcccccCccCcccCCCCCCCcccCCC--CCCCCCCCcHHHHHHHHHHHHHcCCEEEEEeeeccc
Q 003901 268 EKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYNYSSA--GIRNCGHDAINEFKLLVREAHKRGIEVVMDVVFNHT 345 (788)
Q Consensus 268 ~~L~yLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~wgY~~~--~~~~~~~G~~~elk~lV~~aH~~Gi~VilDvV~NH~ 345 (788)
+-+++||++|+|+|-+.---. . .|.|-++ ....|.++ .+-|+++|++||++||+|+.=+-++ .
T Consensus 4 ~~~~~lk~~~v~si~i~a~~h----~---------g~ayYPt~~~~~hp~L~-~Dllge~v~a~h~~Girv~ay~~~~-~ 68 (132)
T PF14871_consen 4 QFVDTLKEAHVNSITIFAKCH----G---------GYAYYPTKVGPRHPGLK-RDLLGEQVEACHERGIRVPAYFDFS-W 68 (132)
T ss_pred HHHHHHHHhCCCEEEEEcccc----c---------EEEEccCCCCcCCCCCC-cCHHHHHHHHHHHCCCEEEEEEeee-c
Confidence 446999999999998633100 0 0112221 12456676 6889999999999999998766555 2
Q ss_pred cCCCCCCCccccCCCCCccceeeCCCCCcc---cCCCCccccCCCCHHHHHHHHHHHHHHHHhcCccEEEEec
Q 003901 346 VEGNDKGPILSFRGVDNSVYYMLAPKGEFY---NYSGCGNTFNCNHPVVRQFIVDCLRYWVTEMHVDGFRFDL 415 (788)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~yy~~~~~g~~~---~~~g~~~dln~~~p~vr~~i~d~l~~W~~e~gVDGFR~D~ 415 (788)
-+.. ...+++|+..+++|... .+...+....+-|...+++++..++--++.|.+|||=||.
T Consensus 69 d~~~---------~~~HPeW~~~~~~G~~~~~~~~~~~~~~~~c~ns~Y~e~~~~~i~Ei~~~y~~DGiF~D~ 132 (132)
T PF14871_consen 69 DEDA---------AERHPEWFVRDADGRPMRGERFGYPGWYTCCLNSPYREFLLEQIREILDRYDVDGIFFDI 132 (132)
T ss_pred ChHH---------HHhCCceeeECCCCCCcCCCCcCCCCceecCCCccHHHHHHHHHHHHHHcCCCCEEEecC
Confidence 1110 02457888888888732 1111111112223356699999999999889999999983
No 56
>PF14701 hDGE_amylase: glucanotransferase domain of human glycogen debranching enzyme
Probab=98.34 E-value=1.9e-06 Score=94.79 Aligned_cols=82 Identities=26% Similarity=0.342 Sum_probs=65.1
Q ss_pred CcCHHHHHhhhHHHHHcCCCeEEECcccccCccCcccCCCCCCCcccCCCCC--CCC------CCCcHHHHHHHHHHHH-
Q 003901 260 PGTYLGVVEKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYNYSSAGI--RNC------GHDAINEFKLLVREAH- 330 (788)
Q Consensus 260 ~G~~~gl~~~L~yLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~wgY~~~~~--~~~------~~G~~~elk~lV~~aH- 330 (788)
.|.|....++|..++++|+|.|+++|+++.+..++ .|+..+. .++ .-.+.+++++||.+++
T Consensus 18 ~G~~~~W~~~l~~~~~~GYNmIHftPlq~~G~S~S----------~YSI~Dql~~~~~~~~~~~~~~~~~v~~~v~~~~~ 87 (423)
T PF14701_consen 18 MGPFSDWEKHLKVISEKGYNMIHFTPLQERGESNS----------PYSIYDQLKFDPDFFPPGKESTFEDVKEFVKEAEK 87 (423)
T ss_pred cCCHhHHHHHHHHHHHcCCcEEEecccccCCCCCC----------CccccchhhcChhhcCCCccccHHHHHHHHHHHHH
Confidence 69999999999999999999999999999754221 2333332 222 2245689999999996
Q ss_pred HcCCEEEEEeeeccccCCCCC
Q 003901 331 KRGIEVVMDVVFNHTVEGNDK 351 (788)
Q Consensus 331 ~~Gi~VilDvV~NH~~~~~~~ 351 (788)
+.||.+|.|||+|||+.+++|
T Consensus 88 ~~~ll~~~DvV~NHtA~nS~W 108 (423)
T PF14701_consen 88 KYGLLSMTDVVLNHTANNSPW 108 (423)
T ss_pred HcCceEEEEEeeccCcCCChH
Confidence 799999999999999988765
No 57
>PF02638 DUF187: Glycosyl hydrolase like GH101; InterPro: IPR003790 This entry describes proteins of unknown function.
Probab=98.34 E-value=3.1e-06 Score=91.45 Aligned_cols=142 Identities=25% Similarity=0.360 Sum_probs=84.6
Q ss_pred CHHHHHhhhHHHHHcCCCeEEECcccccCccCcccCCCCCCCcc-cCCCCC-CCCCCCcHHHHHHHHHHHHHcCCEEEEE
Q 003901 262 TYLGVVEKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYN-YSSAGI-RNCGHDAINEFKLLVREAHKRGIEVVMD 339 (788)
Q Consensus 262 ~~~gl~~~L~yLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~wg-Y~~~~~-~~~~~G~~~elk~lV~~aH~~Gi~VilD 339 (788)
+-+.+.+.|+.|+++|+|+|.+-=-.. .+ .-|.+....|. |.+... .+| +-+=|+.||++||++||+|..=
T Consensus 17 ~~~~~~~~l~~l~~~~~N~V~~qVr~~---gd-a~Y~S~~~p~s~~~~g~~~~~p---g~DpL~~~I~eaHkrGlevHAW 89 (311)
T PF02638_consen 17 SKEQIDEMLDDLKSAGFNAVFVQVRPR---GD-ALYPSDIEPWSGYLTGKQGKDP---GFDPLEFMIEEAHKRGLEVHAW 89 (311)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEEEeC---cE-EEecccccccccccCCCCCCCC---CccHHHHHHHHHHHcCCEEEEE
Confidence 457788889999999999998643221 11 11111111121 111100 112 2566999999999999999988
Q ss_pred eeeccccCCCCCCCccccCCCCCccceeeCCCCCcccC---CCCccccCCCCHHHHHHHHHHHHHHHHhcCccEEEEecc
Q 003901 340 VVFNHTVEGNDKGPILSFRGVDNSVYYMLAPKGEFYNY---SGCGNTFNCNHPVVRQFIVDCLRYWVTEMHVDGFRFDLA 416 (788)
Q Consensus 340 vV~NH~~~~~~~~~~~~~~~~~~~~yy~~~~~g~~~~~---~g~~~dln~~~p~vr~~i~d~l~~W~~e~gVDGFR~D~a 416 (788)
+.++...... .... ..++.++.....|..... .+..--||-.+|+||++|++.++-.++.|.|||+.||-.
T Consensus 90 ~~~~~~~~~~--~~~~----~~~p~~~~~~~~~~~~~~~~~~~~~~~lnP~~PeVr~~i~~~v~Eiv~~YdvDGIhlDdy 163 (311)
T PF02638_consen 90 FRVGFNAPDV--SHIL----KKHPEWFAVNHPGWVRTYEDANGGYYWLNPGHPEVRDYIIDIVKEIVKNYDVDGIHLDDY 163 (311)
T ss_pred EEeecCCCch--hhhh----hcCchhheecCCCceeecccCCCCceEECCCCHHHHHHHHHHHHHHHhcCCCCeEEeccc
Confidence 8555433210 0000 012223222222211111 122235889999999999999999999999999999943
No 58
>cd02861 E_set_proteins_like E or "early" set-like proteins. These alpha amylase-like sugar utilizing enzymes which may be related to the immunoglobulin and/or fibronectin type III superfamilies are associated with different types of catalytic domains at either the N-terminal or C-terminal end. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=98.20 E-value=4.4e-06 Score=71.76 Aligned_cols=69 Identities=22% Similarity=0.384 Sum_probs=51.7
Q ss_pred cEEEEEEcCCCCEEEEEEEeCCCccCCceeeEEecccccCCCCCEEEEEEcCCCCCc-eeeEEEcCCcCCCCCcccCCcc
Q 003901 106 GVNFSIFSSNAVSATLCLITLSDLQENKVTEEIALDSFANKTGDVWHVFLKGDFKDM-LYGYKFDGKFSPQEGHYFDPTK 184 (788)
Q Consensus 106 ~~~F~vwap~A~~V~L~l~~~~d~~~~~~~~~~~l~~~~~~~~gvW~~~i~~~~~~~-~Y~y~~~g~~~~~~g~~~~~~~ 184 (788)
.++|++|||.|++|+|. |+|++|. .++|.+ ...|+|+++++ ...|. .|+|.++|.+
T Consensus 3 ~vtf~~~ap~a~~V~v~----G~fn~W~---~~~m~~---~~~G~w~~~~~-l~~G~y~Ykf~vdg~~------------ 59 (82)
T cd02861 3 PVVFAYRGPEADSVYLA----GSFNNWN---AIPMER---EGDGLWVVTVE-LRPGRYEYKFVVDGEW------------ 59 (82)
T ss_pred cEEEEEECCCCCEEEEE----eECCCCC---cccCEE---CCCCcEEEEEe-CCCCcEEEEEEECCEE------------
Confidence 58999999999999998 8888886 456753 24589999997 44555 7888887541
Q ss_pred cccCcccceeeec
Q 003901 185 IVLDPYAKAVISR 197 (788)
Q Consensus 185 ~~~DPya~~~~~~ 197 (788)
.+.||.+.....+
T Consensus 60 ~~~DP~~~~~~~~ 72 (82)
T cd02861 60 VIVDPNAAAYVDD 72 (82)
T ss_pred eeCCCCCCceecC
Confidence 2479998876433
No 59
>cd02688 E_set E or "early" set of sugar utilizing enzymes which may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=98.15 E-value=8.5e-06 Score=69.63 Aligned_cols=58 Identities=24% Similarity=0.320 Sum_probs=46.9
Q ss_pred CcEEEEEEcCCCCEEEEEEEeCCCccCCceeeEEecccccCCCCCEEEEEEcCCC-CCceeeEEEcCC
Q 003901 105 GGVNFSIFSSNAVSATLCLITLSDLQENKVTEEIALDSFANKTGDVWHVFLKGDF-KDMLYGYKFDGK 171 (788)
Q Consensus 105 ~~~~F~vwap~A~~V~L~l~~~~d~~~~~~~~~~~l~~~~~~~~gvW~~~i~~~~-~~~~Y~y~~~g~ 171 (788)
++++|+||||.|++|+|+++..+ + ...++|.+ ..+|+|++.++... .+..|.|++++.
T Consensus 4 ~~v~f~v~ap~a~~v~l~~~~~~----~--~~~~~~~~---~~~g~w~~~v~~~~~~~~~Y~~~v~~~ 62 (83)
T cd02688 4 KGVTFTVRGPKAQRVSLAGSFNG----D--TQLIPMTK---VEDGYWEVELPLPSPGKYQYKYVLDGG 62 (83)
T ss_pred ccEEEEEECCCCCEEEEEEEECC----C--CCcccCEE---CCCceEEEEEcCCCCCCeEEEEEEeCC
Confidence 68999999999999999998643 1 12456643 35699999999888 899999999875
No 60
>PF02806 Alpha-amylase_C: Alpha amylase, C-terminal all-beta domain; InterPro: IPR006048 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Alpha-amylase is classified as family 13 of the glycosyl hydrolases and is present in archaea, bacteria, plants and animals. Alpha-amylase is an essential enzyme in alpha-glucan metabolism, acting to catalyse the hydrolysis of alpha-1,4-glucosidic bonds of glycogen, starch and related polysaccharides. Although all alpha-amylases possess the same catalytic function, they can vary with respect to sequence. In general, they are composed of three domains: a TIM barrel containing the active site residues and chloride ion-binding site (domain A), a long loop region inserted between the third beta strand and the alpha-helix of domain A that contains calcium-binding site(s) (domain B), and a C-terminal beta-sheet domain that appears to show some variability in sequence and length between amylases (domain C) []. Amylases have at least one conserved calcium-binding site, as calcium is essential for the stability of the enzyme. The chloride-binding functions to activate the enzyme, which acts by a two-step mechanism involving a catalytic nucleophile base (usually an Asp) and a catalytic proton donor (usually a Glu) that are responsible for the formation of the beta-linked glycosyl-enzyme intermediate. This entry represents the all-beta domain that is found in several alpha-amylases, usually at the C terminus, and which forms a Greek key beta-barrel fold in these enzymes []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 1TCM_A 1CXL_A 1PJ9_A 1OT2_A 2DIJ_A 1CGV_A 1CXK_A 1PEZ_A 1CGX_A 2CXG_A ....
Probab=98.07 E-value=5.3e-06 Score=73.39 Aligned_cols=86 Identities=16% Similarity=0.147 Sum_probs=57.0
Q ss_pred CCCcEEEEEEEcCCCCEEEEEEeCCCC--cEEEECCCCCCCCeEEEecCCCCCCCCccCCCCchhhhhhhhcCCCCCCee
Q 003901 692 DKSRFVAFTLIDSVKGEIYVAFNASHL--PVIISLPKRPGYRWEPLVDTSKPEPFDFLSSDLPAKEIAIKQYAPFLDANL 769 (788)
Q Consensus 692 ~~~~vlaf~r~~~~~~~i~Vv~N~~~~--~~~v~Lp~~~g~~w~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 769 (788)
.+++|+||.|.+..++.++||+|+++. ...+.++.+.++.|++++++......+....... .+. ....+..+
T Consensus 7 ~~~~v~af~R~~~~~~~~lvv~Nf~~~~~~~~~~~~~p~~g~y~~vlnsd~~~~~g~~~~~~~--~v~----~~~~g~~~ 80 (95)
T PF02806_consen 7 NENNVIAFERKDKGDDRVLVVFNFSPEAVYEDYRIGVPEAGRYKEVLNSDDEEYGGSGKGNSG--EVT----VDSNGRIT 80 (95)
T ss_dssp ESSSEEEEEETTTETTEEEEEEESSSS-EEEEEEECSSSSEEEEETTTTTCEEEEESSCSETS--EEE----EETTSEEE
T ss_pred CCCCEEEEEEcCCCCCEEEEEEECCCcccceeEEeCCCCcceeeEEeCCCccEECCcccccCc--eEE----EeeCCEEE
Confidence 467999999986432389999999997 3455555543569999999877554332211100 000 11124478
Q ss_pred EEeeCCeEEEEEec
Q 003901 770 YPMLSYSSIILLLS 783 (788)
Q Consensus 770 ~~v~~~s~~vl~~~ 783 (788)
++|||+|++||..+
T Consensus 81 ~~lp~~s~~vl~~~ 94 (95)
T PF02806_consen 81 VTLPPYSALVLKLK 94 (95)
T ss_dssp EEESTTEEEEEEEE
T ss_pred EEECCCEEEEEEEc
Confidence 99999999999875
No 61
>PF02324 Glyco_hydro_70: Glycosyl hydrolase family 70; InterPro: IPR003318 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glucosyltransferases or sucrose 6-glycosyl transferases (GTF-S) (2.4.1.5 from EC, GH70 from CAZY) catalyse the transfer of D-glucopyramnosyl units from sucrose onto acceptor molecules []. This signature roughly corresponds to the N-terminal catalytic domain of the enzyme. Members of this group also contain the putative cell wall binding repeat (IPR002479 from INTERPRO).; GO: 0009250 glucan biosynthetic process; PDB: 3AIE_G 3AIB_D 3AIC_E 3TTQ_A 3TTO_D 3KLL_A 3KLK_A 3HZ3_A.
Probab=98.02 E-value=8.3e-06 Score=92.21 Aligned_cols=109 Identities=18% Similarity=0.281 Sum_probs=60.3
Q ss_pred CCCeEEEEEeccCcccCCCCCCCCCcCHHHHHhhhHHHHHcCCCeEEECcccccCccCcccCCCCCCCc----ccCCCCC
Q 003901 236 QRDLIIYEVHVRGFTRHESSKTEHPGTYLGVVEKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDY----NYSSAGI 311 (788)
Q Consensus 236 ~~~~viYei~v~~Ft~~~~s~~~~~G~~~gl~~~L~yLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~w----gY~~~~~ 311 (788)
...-||||=+- .|..-+.. ...-+..-|++..+-+|++|||..||.|-+-+.....+...-..|.+ +|+..-.
T Consensus 562 LDSqvIYEgFS-NFQ~~~t~--~~eytN~~IA~Na~lFk~wGITsFemAPQY~Ss~D~tFLDSiiqNGYAFtDRYDLg~s 638 (809)
T PF02324_consen 562 LDSQVIYEGFS-NFQDFPTT--PSEYTNVVIAKNADLFKSWGITSFEMAPQYRSSTDGTFLDSIIQNGYAFTDRYDLGMS 638 (809)
T ss_dssp HHT-EEEE----TTB---SS--GGGSHHHHHHHTHHHHHHTTEEEEE----S-B--SSSSHHHHTT-SSSBS-TT-SSSS
T ss_pred hhcchhhcccc-ccccCCCC--hHHHHHHHHHHhHHHHHhcCcceeeeCcceecCCCCcchhhHhhcCccccchhhhcCC
Confidence 35679999322 12221111 12345677888999999999999999999876544322100011100 3332211
Q ss_pred CCCCCCcHHHHHHHHHHHHHcCCEEEEEeeeccccC
Q 003901 312 RNCGHDAINEFKLLVREAHKRGIEVVMDVVFNHTVE 347 (788)
Q Consensus 312 ~~~~~G~~~elk~lV~~aH~~Gi~VilDvV~NH~~~ 347 (788)
.+..||+.+||+..|+++|+.||+||.|+|++.+..
T Consensus 639 ~ptKYGs~~dL~~AikALH~~GiqviaDwVpdQiYn 674 (809)
T PF02324_consen 639 KPTKYGSVEDLRNAIKALHAAGIQVIADWVPDQIYN 674 (809)
T ss_dssp S-BTTB-HHHHHHHHHHHHHTT-EEEEEE-TSEE--
T ss_pred CCCCCCCHHHHHHHHHHHHHcCcchhhhhchHhhhC
Confidence 456899999999999999999999999999999863
No 62
>COG1649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.62 E-value=0.00027 Score=77.87 Aligned_cols=147 Identities=18% Similarity=0.071 Sum_probs=86.3
Q ss_pred CcCHHHHHhhhHHHHHcCCCeEEECcccccCccCcccCCCCCCCc-ccCCCCCCCCCCCcHHHHHHHHHHHHHcCCEEEE
Q 003901 260 PGTYLGVVEKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDY-NYSSAGIRNCGHDAINEFKLLVREAHKRGIEVVM 338 (788)
Q Consensus 260 ~G~~~gl~~~L~yLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~w-gY~~~~~~~~~~G~~~elk~lV~~aH~~Gi~Vil 338 (788)
..+=..+.+.|+.|+.||||+|+..= ...+.-.+.+. .--| .+.+. +.-.-++-+=|..+|++||++||+|+-
T Consensus 60 ~~~~~el~~~ld~l~~ln~NTv~~qV--~~~G~~lypS~--~~p~s~~~~~--~~~~~~g~DpLa~~I~~AHkr~l~v~a 133 (418)
T COG1649 60 LFQRQELKDILDDLQKLNFNTVYPQV--WNDGDALYPSA--VLPWSDGLPG--VLGVDPGYDPLAFVIAEAHKRGLEVHA 133 (418)
T ss_pred cccHHHHHHHHHHHHHcCCceeEEEE--ecCcccccccc--ccccccCcCc--ccCCCCCCChHHHHHHHHHhcCCeeee
Confidence 34556788889999999999998432 22111111000 0001 11110 001123445699999999999999998
Q ss_pred EeeeccccCCCCCC----CccccCCCCCccceeeCCCCCcccCCCCccccCCCCHHHHHHHHHHHHHHHHhcCccEEEEe
Q 003901 339 DVVFNHTVEGNDKG----PILSFRGVDNSVYYMLAPKGEFYNYSGCGNTFNCNHPVVRQFIVDCLRYWVTEMHVDGFRFD 414 (788)
Q Consensus 339 DvV~NH~~~~~~~~----~~~~~~~~~~~~yy~~~~~g~~~~~~g~~~dln~~~p~vr~~i~d~l~~W~~e~gVDGFR~D 414 (788)
-+-+--++...... +.....+-+...|+..... . ...-||-.+|+||++|.+.+..-++.|.|||+-||
T Consensus 134 Wf~~~~~a~~~s~~~~~~p~~~~~~~~~~~~~~~~~~--~-----~~~~ldPg~Pevq~~i~~lv~evV~~YdvDGIQfD 206 (418)
T COG1649 134 WFNPYRMAPPTSPLTKRHPHWLTTKRPGWVYVRHQGW--G-----KRVWLDPGIPEVQDFITSLVVEVVRNYDVDGIQFD 206 (418)
T ss_pred chhhcccCCCCChhHhhCCCCcccCCCCeEEEecCCc--e-----eeeEeCCCChHHHHHHHHHHHHHHhCCCCCceecc
Confidence 88776665432110 0000111111222222110 0 12347888999999999999999999999999999
Q ss_pred ccccc
Q 003901 415 LASIM 419 (788)
Q Consensus 415 ~a~~l 419 (788)
---.+
T Consensus 207 d~fy~ 211 (418)
T COG1649 207 DYFYY 211 (418)
T ss_pred eeecc
Confidence 65443
No 63
>cd06592 GH31_glucosidase_KIAA1161 KIAA1161 is an uncharacterized Homo sapiens protein with a glycosyl hydrolase family 31 (GH31) domain that is homologous to the Escherichia coli YihQ glucosidase. Orthologs of KIA1161 are found in eukaryotes and prokaryotes. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=97.52 E-value=0.0009 Score=72.39 Aligned_cols=133 Identities=18% Similarity=0.298 Sum_probs=87.3
Q ss_pred cCHHHHHhhhHHHHHcCC--CeEEECcccccCccCcccCCCCCCCcccCCCCCCCCCCCcHHHHHHHHHHHHHcCCEEEE
Q 003901 261 GTYLGVVEKLDHLKDLGI--NCLELMPCHEFNELEYFSYNSVLGDYNYSSAGIRNCGHDAINEFKLLVREAHKRGIEVVM 338 (788)
Q Consensus 261 G~~~gl~~~L~yLk~LGv--t~I~L~Pi~~~~~~~~~~~~~~~~~wgY~~~~~~~~~~G~~~elk~lV~~aH~~Gi~Vil 338 (788)
-+-..+.+.++.++++|| +.|+|=--+.. ....|.++.. +|- +.++||+++|++|+++++
T Consensus 27 ~s~~~v~~~~~~~~~~~iP~d~i~iD~~w~~----------~~g~f~~d~~-----~FP---dp~~mi~~l~~~G~k~~l 88 (303)
T cd06592 27 INQETVLNYAQEIIDNGFPNGQIEIDDNWET----------CYGDFDFDPT-----KFP---DPKGMIDQLHDLGFRVTL 88 (303)
T ss_pred cCHHHHHHHHHHHHHcCCCCCeEEeCCCccc----------cCCccccChh-----hCC---CHHHHHHHHHHCCCeEEE
Confidence 345778888899999985 56665321110 1112333332 343 389999999999999999
Q ss_pred EeeeccccCCCCCCCccccCCCCCccceeeCCCC-Ccc---cCCCCccccCCCCHHHHHHHHHHHHHHHHhcCccEEEEe
Q 003901 339 DVVFNHTVEGNDKGPILSFRGVDNSVYYMLAPKG-EFY---NYSGCGNTFNCNHPVVRQFIVDCLRYWVTEMHVDGFRFD 414 (788)
Q Consensus 339 DvV~NH~~~~~~~~~~~~~~~~~~~~yy~~~~~g-~~~---~~~g~~~dln~~~p~vr~~i~d~l~~W~~e~gVDGFR~D 414 (788)
=+-+ +...++.. ++......|+..+++| ..+ .+.+...-+|+.||++|+.+.+.++..+.++|||||-+|
T Consensus 89 ~i~P-~i~~~s~~-----~~e~~~~g~~vk~~~g~~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~~~~Gvdg~w~D 162 (303)
T cd06592 89 WVHP-FINTDSEN-----FREAVEKGYLVSEPSGDIPALTRWWNGTAAVLDFTNPEAVDWFLSRLKSLQEKYGIDSFKFD 162 (303)
T ss_pred EECC-eeCCCCHH-----HHhhhhCCeEEECCCCCCCcccceecCCcceEeCCCHHHHHHHHHHHHHHHHHhCCcEEEeC
Confidence 8887 44433221 1212223455555555 211 233444568999999999999999999989999999999
Q ss_pred ccc
Q 003901 415 LAS 417 (788)
Q Consensus 415 ~a~ 417 (788)
...
T Consensus 163 ~~E 165 (303)
T cd06592 163 AGE 165 (303)
T ss_pred CCC
Confidence 765
No 64
>cd06593 GH31_xylosidase_YicI YicI alpha-xylosidase is a glycosyl hydrolase family 31 (GH31) enzyme that catalyzes the release of an alpha-xylosyl residue from the non-reducing end of alpha-xyloside substrates such as alpha-xylosyl fluoride and isoprimeverose. YicI forms a homohexamer (a trimer of dimers). All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The YicI family corresponds to subgroup 4 in the Ernst et al classification of GH31 enzymes.
Probab=97.37 E-value=0.0011 Score=71.81 Aligned_cols=138 Identities=14% Similarity=0.212 Sum_probs=89.9
Q ss_pred cCHHHHHhhhHHHHHcC--CCeEEECcccccCccCcccCCCCCCCcccCCCCCCCCCCCcHHHHHHHHHHHHHcCCEEEE
Q 003901 261 GTYLGVVEKLDHLKDLG--INCLELMPCHEFNELEYFSYNSVLGDYNYSSAGIRNCGHDAINEFKLLVREAHKRGIEVVM 338 (788)
Q Consensus 261 G~~~gl~~~L~yLk~LG--vt~I~L~Pi~~~~~~~~~~~~~~~~~wgY~~~~~~~~~~G~~~elk~lV~~aH~~Gi~Vil 338 (788)
.+-..+.+.++.+++.| +++|+|=.=+... + ....|.++.. +|. +.++||+++|++|++|++
T Consensus 21 ~~~~~v~~~~~~~~~~~iP~d~~~lD~~w~~~------~--~~~~f~~d~~-----~FP---d~~~~i~~l~~~G~~~~~ 84 (308)
T cd06593 21 YDEEEVNEFADGMRERNLPCDVIHLDCFWMKE------F--QWCDFEFDPD-----RFP---DPEGMLSRLKEKGFKVCL 84 (308)
T ss_pred CCHHHHHHHHHHHHHcCCCeeEEEEecccccC------C--cceeeEECcc-----cCC---CHHHHHHHHHHCCCeEEE
Confidence 35567888889999999 5667664433210 0 0012334433 333 378999999999999999
Q ss_pred EeeeccccCCCCCCCccccCCCCCccceeeCCCCCcc---cCCCCccccCCCCHHHHHHHHHHHHHHHHhcCccEEEEec
Q 003901 339 DVVFNHTVEGNDKGPILSFRGVDNSVYYMLAPKGEFY---NYSGCGNTFNCNHPVVRQFIVDCLRYWVTEMHVDGFRFDL 415 (788)
Q Consensus 339 DvV~NH~~~~~~~~~~~~~~~~~~~~yy~~~~~g~~~---~~~g~~~dln~~~p~vr~~i~d~l~~W~~e~gVDGFR~D~ 415 (788)
-+.+ +...+++. ++......|+..+.+|..+ .|.+...-+|+.||++++.+.+.++.++ ++|||||-+|.
T Consensus 85 ~~~P-~i~~~~~~-----~~e~~~~g~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~-~~Gid~~~~D~ 157 (308)
T cd06593 85 WINP-YIAQKSPL-----FKEAAEKGYLVKKPDGSVWQWDLWQPGMGIIDFTNPDACKWYKDKLKPLL-DMGVDCFKTDF 157 (308)
T ss_pred EecC-CCCCCchh-----HHHHHHCCeEEECCCCCeeeecccCCCcccccCCCHHHHHHHHHHHHHHH-HhCCcEEecCC
Confidence 9875 45443321 1111223455555555433 2333345689999999999999999988 69999999998
Q ss_pred cccccc
Q 003901 416 ASIMTR 421 (788)
Q Consensus 416 a~~l~~ 421 (788)
...++.
T Consensus 158 ~e~~p~ 163 (308)
T cd06593 158 GERIPT 163 (308)
T ss_pred CCCCCc
Confidence 876653
No 65
>cd06602 GH31_MGAM_SI_GAA This family includes the following three closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), and lysosomal acid alpha-glucosidase (GAA), also known as acid-maltase. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal domain found near the membrane-bound end, and a C-terminal luminal domain. Both of
Probab=97.15 E-value=0.0034 Score=68.97 Aligned_cols=138 Identities=14% Similarity=0.141 Sum_probs=84.0
Q ss_pred HHHHHhhhHHHHHcCC--CeEEECcccccCccCcccCCCCCCCcccCCCCCCCCCCCcHHHHHHHHHHHHHcCCEEEEEe
Q 003901 263 YLGVVEKLDHLKDLGI--NCLELMPCHEFNELEYFSYNSVLGDYNYSSAGIRNCGHDAINEFKLLVREAHKRGIEVVMDV 340 (788)
Q Consensus 263 ~~gl~~~L~yLk~LGv--t~I~L~Pi~~~~~~~~~~~~~~~~~wgY~~~~~~~~~~G~~~elk~lV~~aH~~Gi~VilDv 340 (788)
-+.+.+.++.+++.|| +.|+|=.=+. .....|.++...+.+|. .++||+++|++|++|++-+
T Consensus 23 ~~~v~~~~~~~r~~~iP~d~i~lD~~~~----------~~~~~f~~d~~~FPdp~------~~~mi~~L~~~G~k~~~~i 86 (339)
T cd06602 23 VDEVKEVVENMRAAGIPLDVQWNDIDYM----------DRRRDFTLDPVRFPGLK------MPEFVDELHANGQHYVPIL 86 (339)
T ss_pred HHHHHHHHHHHHHhCCCcceEEECcccc----------cCccceecccccCCCcc------HHHHHHHHHHCCCEEEEEE
Confidence 4667777888887665 5666532111 11222444443333321 2999999999999999976
Q ss_pred eeccccCCCCCCCccccCCCCCccceeeCCCCCcc---cCCCCccccCCCCHHHHHHHHHHHHHHHHhcCccEEEEeccc
Q 003901 341 VFNHTVEGNDKGPILSFRGVDNSVYYMLAPKGEFY---NYSGCGNTFNCNHPVVRQFIVDCLRYWVTEMHVDGFRFDLAS 417 (788)
Q Consensus 341 V~NH~~~~~~~~~~~~~~~~~~~~yy~~~~~g~~~---~~~g~~~dln~~~p~vr~~i~d~l~~W~~e~gVDGFR~D~a~ 417 (788)
.+ +...+........++......||..+.+|..+ .|.|.+.-+|+.||++++...+.++.+++++|||||=+|...
T Consensus 87 ~P-~v~~~~~~~~~~~~~e~~~~g~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~~~~Gvdg~w~D~~E 165 (339)
T cd06602 87 DP-AISANEPTGSYPPYDRGLEMDVFIKNDDGSPYIGKVWPGYTVFPDFLNPNTQEWWTDEIKDFHDQVPFDGLWIDMNE 165 (339)
T ss_pred eC-ccccCcCCCCCHHHHHHHHCCeEEECCCCCEEEEEeCCCCCcCcCCCCHHHHHHHHHHHHHHHhcCCCcEEEecCCC
Confidence 53 33222100000011111123455555555433 234545568999999999999999999978999999999765
No 66
>PF02065 Melibiase: Melibiase; InterPro: IPR000111 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycosyl hydrolase family 27, family 31 and family 36 alpha-galactosidases form the glycosyl hydrolase clan GH-D (acc_GH from CAZY), a superfamily of alpha-galactosidases, alpha-N-acetylgalactosaminidases, and isomaltodextranases which are likely to share a common catalytic mechanism and structural topology. Alpha-galactosidase (3.2.1.22 from EC) (melibiase) [] catalyzes the hydrolysis of melibiose into galactose and glucose. In man, the deficiency of this enzyme is the cause of Fabry's disease (X-linked sphingolipidosis). Alpha-galactosidase is present in a variety of organisms. There is a considerable degree of similarity in the sequence of alpha-galactosidase from various eukaryotic species. Escherichia coli alpha-galactosidase (gene melA), which requires NAD and magnesium as cofactors, is not structurally related to the eukaryotic enzymes; by contrast, an Escherichia coli plasmid encoded alpha-galactosidase (gene rafA P16551 from SWISSPROT) [] contains a region of about 50 amino acids which is similar to a domain of the eukaryotic alpha-galactosidases. Alpha-N-acetylgalactosaminidase (3.2.1.49 from EC) [] catalyzes the hydrolysis of terminal non-reducing N-acetyl-D-galactosamine residues in N-acetyl-alpha-D- galactosaminides. In man, the deficiency of this enzyme is the cause of Schindler and Kanzaki diseases. The sequence of this enzyme is highly related to that of the eukaryotic alpha-galactosidases.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1KTC_A 1KTB_A 1UAS_A 3H55_A 3H53_A 3IGU_B 3H54_A 3LRM_A 3LRL_A 3LRK_A ....
Probab=97.08 E-value=0.0074 Score=67.22 Aligned_cols=140 Identities=16% Similarity=0.159 Sum_probs=84.7
Q ss_pred HHHHHhhhHHHHHcCCCeEEECcccccCccCcccCCCCCCCcccCCCCCCCCCCCcHHHHHHHHHHHHHcCCEEEEEeee
Q 003901 263 YLGVVEKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYNYSSAGIRNCGHDAINEFKLLVREAHKRGIEVVMDVVF 342 (788)
Q Consensus 263 ~~gl~~~L~yLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~wgY~~~~~~~~~~G~~~elk~lV~~aH~~Gi~VilDvV~ 342 (788)
-..+.+.++.++++|++.+.|==-+.....+ .....+.|-.++. +| +..|+.|++.+|++||+.=|=+-+
T Consensus 57 e~~i~~~a~~~~~~G~e~fviDDGW~~~r~~---d~~~~GdW~~~~~-----kF--P~Gl~~l~~~i~~~Gmk~GlW~eP 126 (394)
T PF02065_consen 57 EEKILELADAAAELGYEYFVIDDGWFGGRDD---DNAGLGDWEPDPK-----KF--PNGLKPLADYIHSLGMKFGLWFEP 126 (394)
T ss_dssp HHHHHHHHHHHHHHT-SEEEE-SSSBCTEST---TTSTTSBECBBTT-----TS--TTHHHHHHHHHHHTT-EEEEEEET
T ss_pred HHHHHHHHHHHHHhCCEEEEEcCccccccCC---CcccCCceeEChh-----hh--CCcHHHHHHHHHHCCCeEEEEecc
Confidence 3556667788999999987652111110000 0112233443333 33 235999999999999999999987
Q ss_pred ccccCCCCCCCccccCCCCCccceeeCCCCCcccCCCCccccCCCCHHHHHHHHHHHHHHHHhcCccEEEEecccccc
Q 003901 343 NHTVEGNDKGPILSFRGVDNSVYYMLAPKGEFYNYSGCGNTFNCNHPVVRQFIVDCLRYWVTEMHVDGFRFDLASIMT 420 (788)
Q Consensus 343 NH~~~~~~~~~~~~~~~~~~~~yy~~~~~g~~~~~~g~~~dln~~~p~vr~~i~d~l~~W~~e~gVDGFR~D~a~~l~ 420 (788)
--++.++... ..+++|....++..... ...+--||+.+|+|++++.+.+...++++|||.|.+|....+.
T Consensus 127 e~v~~~S~l~-------~~hPdw~l~~~~~~~~~-~r~~~vLD~~~pev~~~l~~~i~~ll~~~gidYiK~D~n~~~~ 196 (394)
T PF02065_consen 127 EMVSPDSDLY-------REHPDWVLRDPGRPPTL-GRNQYVLDLSNPEVRDYLFEVIDRLLREWGIDYIKWDFNRDIT 196 (394)
T ss_dssp TEEESSSCHC-------CSSBGGBTCCTTSE-EC-BTTBEEB-TTSHHHHHHHHHHHHHHHHHTT-SEEEEE-TS-TT
T ss_pred ccccchhHHH-------HhCccceeecCCCCCcC-cccceEEcCCCHHHHHHHHHHHHHHHHhcCCCEEEeccccCCC
Confidence 7766654321 13455654433322111 1112248999999999999999999999999999999887664
No 67
>cd06597 GH31_transferase_CtsY CtsY (cyclic tetrasaccharide-synthesizing enzyme Y) is a bacterial 3-alpha-isomaltosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsZ. CtsY and CtsZ both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=97.03 E-value=0.0015 Score=71.70 Aligned_cols=153 Identities=17% Similarity=0.208 Sum_probs=86.7
Q ss_pred CHHHHHhhhHHHHHcCC--CeEEECcccccCc------cCcccCCCCCCCcccCCCCCCCCCCCcHHHHHHHHHHHHHcC
Q 003901 262 TYLGVVEKLDHLKDLGI--NCLELMPCHEFNE------LEYFSYNSVLGDYNYSSAGIRNCGHDAINEFKLLVREAHKRG 333 (788)
Q Consensus 262 ~~~gl~~~L~yLk~LGv--t~I~L~Pi~~~~~------~~~~~~~~~~~~wgY~~~~~~~~~~G~~~elk~lV~~aH~~G 333 (788)
+-..+.+-++.+++.|| ++|+|=+-+.... .++...+. ...|.|+...+.. ...--+.++||+++|++|
T Consensus 22 ~~~ev~~v~~~~~~~~iP~d~i~lD~W~~~~~~~~w~d~~y~~~~~-~~~~~~~~~~f~~--~~~FPdp~~mi~~Lh~~G 98 (340)
T cd06597 22 TQAEVMRQMDAHEEHGIPVTVVVIEQWSDEATFYVFNDAQYTPKDG-GAPLSYDDFSFPV--EGRWPNPKGMIDELHEQG 98 (340)
T ss_pred CHHHHHHHHHHHHHcCCCeeEEEEecccCcceeeeeccchhccccc-CCcceecccccCc--cccCCCHHHHHHHHHHCC
Confidence 45677777888888876 6777753111000 00000000 0012222221110 011236899999999999
Q ss_pred CEEEEEeeeccccCC-CCCCC-ccccCCCCCccceeeCCCCCcc----cCCCCccccCCCCHHHHHHHHHHHHHHHHhcC
Q 003901 334 IEVVMDVVFNHTVEG-NDKGP-ILSFRGVDNSVYYMLAPKGEFY----NYSGCGNTFNCNHPVVRQFIVDCLRYWVTEMH 407 (788)
Q Consensus 334 i~VilDvV~NH~~~~-~~~~~-~~~~~~~~~~~yy~~~~~g~~~----~~~g~~~dln~~~p~vr~~i~d~l~~W~~e~g 407 (788)
++|++-+.+- ...+ +.... ...+.......|+..+.+|..+ .|.|...-+|+.||++++...+.++.+++++|
T Consensus 99 ~kv~l~v~P~-i~~~~~~~~~~~~~~~~~~~~g~~vk~~~G~~~~~~~~W~g~~~~~Dftnp~a~~Ww~~~~~~~~~~~G 177 (340)
T cd06597 99 VKVLLWQIPI-IKLRPHPHGQADNDEDYAVAQNYLVQRGVGKPYRIPGQWFPDSLMLDFTNPEAAQWWMEKRRYLVDELG 177 (340)
T ss_pred CEEEEEecCc-cccccccccccchhHHHHHHCCEEEEcCCCCccccccccCCCceeecCCCHHHHHHHHHHHHHHHHhcC
Confidence 9999865542 2111 10000 0011111223466666666532 23344457999999999999999999998899
Q ss_pred ccEEEEecccc
Q 003901 408 VDGFRFDLASI 418 (788)
Q Consensus 408 VDGFR~D~a~~ 418 (788)
||||-+|....
T Consensus 178 idg~w~D~~E~ 188 (340)
T cd06597 178 IDGFKTDGGEH 188 (340)
T ss_pred CcEEEecCCCc
Confidence 99999997653
No 68
>cd06599 GH31_glycosidase_Aec37 Glycosyl hydrolase family 31 (GH31) domain of a bacterial protein family represented by Escherichia coli protein Aec37. The gene encoding Aec37 (aec-37) is located within a genomic island (AGI-3) isolated from the extraintestinal avian pathogenic Escherichia coli strain BEN2908. The function of Aec37 and its orthologs is unknown; however, deletion of a region of the genome that includes aec-37 affects the assimilation of seven carbohydrates, decreases growth rate of the strain in minimal medium containing galacturonate or trehalose, and attenuates the virulence of E. coli BEN2908 in chickens. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=96.86 E-value=0.0073 Score=65.76 Aligned_cols=134 Identities=13% Similarity=0.221 Sum_probs=81.1
Q ss_pred HHHHhhhHHHHHcCC--CeEEECcccccCccCcccCCCCCCCcccCCCCCCCCCCCcHHHHHHHHHHHHHcCCEEEEEee
Q 003901 264 LGVVEKLDHLKDLGI--NCLELMPCHEFNELEYFSYNSVLGDYNYSSAGIRNCGHDAINEFKLLVREAHKRGIEVVMDVV 341 (788)
Q Consensus 264 ~gl~~~L~yLk~LGv--t~I~L~Pi~~~~~~~~~~~~~~~~~wgY~~~~~~~~~~G~~~elk~lV~~aH~~Gi~VilDvV 341 (788)
+.+.+-++.+++.|| ++|+|-+=+... +......|.++.. +|- +.++||+++|++|++|++-+.
T Consensus 29 ~~v~~~~~~~r~~~iP~d~i~ld~~~~~~------~~~~~~~f~~d~~-----~FP---dp~~mi~~L~~~g~k~~~~i~ 94 (317)
T cd06599 29 EALLEFIDKCREHDIPCDSFHLSSGYTSI------EGGKRYVFNWNKD-----RFP---DPAAFVAKFHERGIRLAPNIK 94 (317)
T ss_pred HHHHHHHHHHHHcCCCeeEEEEecccccc------CCCceeeeecCcc-----cCC---CHHHHHHHHHHCCCEEEEEeC
Confidence 456677788888775 677764321100 0001111333332 232 478999999999999998665
Q ss_pred eccccCCCCCCCccccCCCCCccceeeCCCCCcc----cCCCCccccCCCCHHHHHHHHHHHHHHHHhcCccEEEEeccc
Q 003901 342 FNHTVEGNDKGPILSFRGVDNSVYYMLAPKGEFY----NYSGCGNTFNCNHPVVRQFIVDCLRYWVTEMHVDGFRFDLAS 417 (788)
Q Consensus 342 ~NH~~~~~~~~~~~~~~~~~~~~yy~~~~~g~~~----~~~g~~~dln~~~p~vr~~i~d~l~~W~~e~gVDGFR~D~a~ 417 (788)
+- +..+++ . ++......|+..+.+|... .+.|.+.-+|+.||++++...+.++.-+.+.|||||=+|...
T Consensus 95 P~-i~~~~~---~--y~e~~~~g~~v~~~~g~~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~~~~Gvdg~w~D~~E 168 (317)
T cd06599 95 PG-LLQDHP---R--YKELKEAGAFIKPPDGREPSIGQFWGGVGSFVDFTNPEGREWWKEGVKEALLDLGIDSTWNDNNE 168 (317)
T ss_pred Cc-ccCCCH---H--HHHHHHCCcEEEcCCCCCcceecccCCCeEeecCCChHHHHHHHHHHHHHHhcCCCcEEEecCCC
Confidence 43 332221 1 1212223455554444311 233444468999999999999999666668999999999664
No 69
>KOG3625 consensus Alpha amylase [Carbohydrate transport and metabolism]
Probab=96.84 E-value=0.0011 Score=76.98 Aligned_cols=82 Identities=23% Similarity=0.285 Sum_probs=63.1
Q ss_pred CcCHHHHHhhhHHHHHcCCCeEEECcccccCccCcccCCCCCCCcccCCCCC--CCCCC----C--cHHHHHHHHHHHHH
Q 003901 260 PGTYLGVVEKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYNYSSAGI--RNCGH----D--AINEFKLLVREAHK 331 (788)
Q Consensus 260 ~G~~~gl~~~L~yLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~wgY~~~~~--~~~~~----G--~~~elk~lV~~aH~ 331 (788)
-|.+.....+|.-.|+-|+|-|++.|+++-....+ .|+..+- +++.+ + +.+|.++||+.+|+
T Consensus 138 LGpl~eWeprL~va~e~gYNmIHfTPlqelG~S~S----------~YSl~dql~~~~~~~~~~~k~s~eDV~~lV~~l~r 207 (1521)
T KOG3625|consen 138 LGPLDEWEPRLRVAKESGYNMIHFTPLQELGLSRS----------CYSLADQLELNPDFSRPNRKYSFEDVGQLVEKLKR 207 (1521)
T ss_pred cCChhhhhHHHHHHHHcCCceEeeeeHHHhccCCC----------ccchHhhhhcChhhhccCCCCCHHHHHHHHHHHHh
Confidence 58888999999999999999999999999643221 2222221 22222 2 78999999999997
Q ss_pred -cCCEEEEEeeeccccCCCCC
Q 003901 332 -RGIEVVMDVVFNHTVEGNDK 351 (788)
Q Consensus 332 -~Gi~VilDvV~NH~~~~~~~ 351 (788)
-+|--|-|||+|||+..+.|
T Consensus 208 ewnvlsi~DvV~NHtAnns~W 228 (1521)
T KOG3625|consen 208 EWNVLSITDVVYNHTANNSKW 228 (1521)
T ss_pred hcCeeeeehhhhhccccCCch
Confidence 49999999999999987654
No 70
>PRK14507 putative bifunctional 4-alpha-glucanotransferase/malto-oligosyltrehalose synthase; Provisional
Probab=96.81 E-value=0.0097 Score=76.28 Aligned_cols=119 Identities=15% Similarity=0.171 Sum_probs=77.7
Q ss_pred HHHhcCCceEEecccccccCCCCCCCCcCCCCCccccccCccc--------------------------CcchHHHHHHH
Q 003901 602 CLMVSQGVPMISMGDEYGHTKGGNNNTYCHDNDINYFRWDKKE--------------------------ESKSDFFRFCC 655 (788)
Q Consensus 602 lllt~pGiP~Iy~GdE~G~~~~g~~n~y~~~~~~~~~~W~~~~--------------------------~~~~~l~~~~r 655 (788)
+-+|+||||=||+|.|+=.- +.-+||+|.+.|+.... .+..-=+..+.
T Consensus 1502 Lklt~PGVPD~YQG~E~wd~------SLVDPDNRRPVDf~~r~~~L~~l~~~~~~~~~~~~~~~l~~~~~dG~iKl~l~~ 1575 (1693)
T PRK14507 1502 LKLTLPGVPDTYQGTEFWDF------SLVDPDNRRPVDYAARARALEALGAMHAEGGHAACPDALLGSWQDGRIKLAVLW 1575 (1693)
T ss_pred HHHcCCCCCcccCCcccccc------cCcCCCCCCCCCHHHHHHHHHhhhhcccccccccchhhhhccCCCchHHHHHHH
Confidence 44899999999999996432 45567778888765211 00011234668
Q ss_pred HHHHHHhhCccC-CCCCCCCccceeeccCCCCCCCCCCCCcEEEEEEEcCCCCEEEEEEeC-----------------CC
Q 003901 656 LLTKFRHECESL-GLSDFPTADRLQWHGHAPGLPDWSDKSRFVAFTLIDSVKGEIYVAFNA-----------------SH 717 (788)
Q Consensus 656 ~Li~lRk~~~aL-~~g~~~~~~~~~~~~~~~~~~~~~~~~~vlaf~r~~~~~~~i~Vv~N~-----------------~~ 717 (788)
++++||+++|.| ..|+|..+ .-. -...++++||.|.... ..++||.=. ..
T Consensus 1576 ~~L~lRr~~p~lF~~G~Y~PL---~~~--------G~~~~hv~AFaR~~~~-~~~vvvvpR~~~~l~~~~~~~~~~~~~W 1643 (1693)
T PRK14507 1576 RLLADRRARPALFRDGDYRPL---KAE--------GARAEHVVAFARRRGG-DDLVVAVPRLVARLAGEDGELPWSAEAW 1643 (1693)
T ss_pred HHHHHHHhChhhhccCCeeEE---ecc--------CCccccEEEEEecCCC-cEEEEEEecchhhhhcccccCCcccCCC
Confidence 999999999986 57888762 111 1235789999998754 555554211 23
Q ss_pred CcEEEECCCCCCCCeEEEecC
Q 003901 718 LPVIISLPKRPGYRWEPLVDT 738 (788)
Q Consensus 718 ~~~~v~Lp~~~g~~w~~l~d~ 738 (788)
....+.||...++.|+.++.+
T Consensus 1644 ~dT~~~LP~~~~~~w~d~ltg 1664 (1693)
T PRK14507 1644 AGTVVPLVLPAGSRWVDVLTG 1664 (1693)
T ss_pred CCCEEeCCCccCccceEeccC
Confidence 445788886545589998854
No 71
>cd06594 GH31_glucosidase_YihQ YihQ is a bacterial alpha-glucosidase with a conserved glycosyl hydrolase family 31 (GH31) domain that catalyzes the release of an alpha-glucosyl residue from the non-reducing end of alpha-glucoside substrates such as alpha-glucosyl fluoride. Orthologs of YihQ that have not yet been functionally characterized are present in plants and fungi. YihQ has sequence similarity to other GH31 enzymes such as CtsZ, a 6-alpha-glucosyltransferase from Bacillus globisporus, and YicI, an alpha-xylosidase from Echerichia coli. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation.
Probab=96.80 E-value=0.0026 Score=69.25 Aligned_cols=143 Identities=14% Similarity=0.212 Sum_probs=87.7
Q ss_pred CHHHHHhhhHHHHHcCC--CeEEECcccccCccCcccCCCCCCCcccCCCCCCCCCCCcHHHHHHHHHHHHHcCCEEEEE
Q 003901 262 TYLGVVEKLDHLKDLGI--NCLELMPCHEFNELEYFSYNSVLGDYNYSSAGIRNCGHDAINEFKLLVREAHKRGIEVVMD 339 (788)
Q Consensus 262 ~~~gl~~~L~yLk~LGv--t~I~L~Pi~~~~~~~~~~~~~~~~~wgY~~~~~~~~~~G~~~elk~lV~~aH~~Gi~VilD 339 (788)
+-..+.+.++.+++.|| ++|||- ..........++. ....|.+++.. | -+.++||+++|++|++|++-
T Consensus 21 s~~~v~~~~~~~~~~~iP~d~i~ld-dw~~~~~~~~g~~-~~~~f~~d~~~-----F---Pdp~~mi~~Lh~~G~~~~~~ 90 (317)
T cd06594 21 GTDKVLEALEKARAAGVKVAGLWLQ-DWTGRRETSFGDR-LWWNWEWDPER-----Y---PGLDELIEELKARGIRVLTY 90 (317)
T ss_pred CHHHHHHHHHHHHHcCCCeeEEEEc-cccCcccccccce-eeeeeEEChhh-----C---CCHHHHHHHHHHCCCEEEEE
Confidence 56788888888888765 667764 2210000000000 00012334332 3 24789999999999999996
Q ss_pred eeeccccCCCCCCCccccCCCCCccceeeCCCCCcc---cCCCCccccCCCCHHHHHHHHHHHHHHHHhcCccEEEEecc
Q 003901 340 VVFNHTVEGNDKGPILSFRGVDNSVYYMLAPKGEFY---NYSGCGNTFNCNHPVVRQFIVDCLRYWVTEMHVDGFRFDLA 416 (788)
Q Consensus 340 vV~NH~~~~~~~~~~~~~~~~~~~~yy~~~~~g~~~---~~~g~~~dln~~~p~vr~~i~d~l~~W~~e~gVDGFR~D~a 416 (788)
+. .++..+... . ++......|+..+++|.-+ .+.+.+.-+|+.||++++...+.++..+.++|||||=+|.-
T Consensus 91 i~-P~v~~~~~~--~--y~~~~~~g~~vk~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~~~~Gvdg~w~D~~ 165 (317)
T cd06594 91 IN-PYLADDGPL--Y--YEEAKDAGYLVKDADGSPYLVDFGEFDCGVLDLTNPAARDWFKQVIKEMLLDLGLSGWMADFG 165 (317)
T ss_pred ec-CceecCCch--h--HHHHHHCCeEEECCCCCeeeeccCCCCceeeecCCHHHHHHHHHHHHHHhhhcCCcEEEecCC
Confidence 54 444332211 0 1222223456666655432 23444467899999999999999998866899999999976
Q ss_pred ccc
Q 003901 417 SIM 419 (788)
Q Consensus 417 ~~l 419 (788)
..+
T Consensus 166 E~~ 168 (317)
T cd06594 166 EYL 168 (317)
T ss_pred CCC
Confidence 644
No 72
>PF02324 Glyco_hydro_70: Glycosyl hydrolase family 70; InterPro: IPR003318 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glucosyltransferases or sucrose 6-glycosyl transferases (GTF-S) (2.4.1.5 from EC, GH70 from CAZY) catalyse the transfer of D-glucopyramnosyl units from sucrose onto acceptor molecules []. This signature roughly corresponds to the N-terminal catalytic domain of the enzyme. Members of this group also contain the putative cell wall binding repeat (IPR002479 from INTERPRO).; GO: 0009250 glucan biosynthetic process; PDB: 3AIE_G 3AIB_D 3AIC_E 3TTQ_A 3TTO_D 3KLL_A 3KLK_A 3HZ3_A.
Probab=96.72 E-value=0.0066 Score=69.47 Aligned_cols=289 Identities=19% Similarity=0.192 Sum_probs=134.4
Q ss_pred ccccCCCCHHHHHHHHHHHHHHHH---------hcCccEEEEecccccccCCCccccccccCccccCCccccCCCCCChH
Q 003901 381 GNTFNCNHPVVRQFIVDCLRYWVT---------EMHVDGFRFDLASIMTRGSSLWDSVNVYGIPIEGDLLTTGTPLRSPP 451 (788)
Q Consensus 381 ~~dln~~~p~vr~~i~d~l~~W~~---------e~gVDGFR~D~a~~l~~~~~~w~~~~~~g~~~~~~~~~~g~~~~~~~ 451 (788)
.+|++-+||.|+...+.++-|.+. +..+||||+||+..+..+ +.+-. + ..
T Consensus 143 aNDVDNSNPvVQAEqLNwl~yLmN~GsI~~~d~daNFDgiRVDAvDNVdAD--lLqia---~----------------dy 201 (809)
T PF02324_consen 143 ANDVDNSNPVVQAEQLNWLHYLMNFGSITANDPDANFDGIRVDAVDNVDAD--LLQIA---G----------------DY 201 (809)
T ss_dssp SEEE-TTSHHHHHHHHHHHHHHHTHHHHHHS-TTSS--EEEETTGGGS-TH--HHHHH---H----------------HH
T ss_pred eccccCCCchhhHHHHHHHHHHhhccccccCCCCCCcccEEeecccccCHH--HHHHH---H----------------HH
Confidence 478999999999999999999886 688999999999998642 11100 0 00
Q ss_pred HHHHHHcC---CccccceeeeeeccCCCcccccccCCCCcccccchhHHHHHHHHHhCCCCcHHHHHHHHhCCCCccCC-
Q 003901 452 LIDLISND---PILRGVKLIAEAWDTGGLYQVGIFPHWGIWSEWNGKYRDIVRQFIKGTDGFAGAFAECLCGSPNLYQG- 527 (788)
Q Consensus 452 ~~~~i~~~---~~~~~~~ligE~w~~~~~~~~~~~~~~~~~~~~n~~f~~~lr~~~~g~~~~~~~~~~~l~~~~~~~~~- 527 (788)
|.++...+ ....+-..|=|.|.......+-... +.--.++..++..+...+.......+.+...+..+..--..
T Consensus 202 fkaaYgv~~~~a~An~HlSilE~ws~nd~~y~~~~g--~~qL~mD~~~~~~l~~sL~~~~~~R~~l~~li~~slvnR~~d 279 (809)
T PF02324_consen 202 FKAAYGVDKNDANANKHLSILEAWSSNDPDYVKDTG--NPQLTMDNGLRLALLYSLTRPSNNRSGLEPLITNSLVNRSND 279 (809)
T ss_dssp HHHHH-TTTBHHHHCTC--EESSSTTTHHHHHHHTT--SSSBEEEHHHHHHHHHHTSS-TTC---CTHHHHSSSSECSEE
T ss_pred HHHHhCCCcChhhHhhhheeeeccccCChHHHhcCC--CceeeecHHHHHHHHHHhcCCccccccHHHHhhhhhcccccC
Confidence 11111111 0011345677999765321111100 01123567788888877776544445555555443211100
Q ss_pred -CCCCCCcceeecccCCCc--c-hhhhhhhcccccccCCCCCCCCCCCCCCCCcCCCCcchhHHHHHH-----------H
Q 003901 528 -GGRKPWNSINFVCAHDGF--S-LADLVSYNQKHNLANGEDNNDGETHNNSWNCGQEGEFANILVKKL-----------R 592 (788)
Q Consensus 528 -~~~~p~~~vnfv~nHD~~--r-l~d~~~~~~~~n~~~g~~~~dg~~~~~sw~~g~~~~~~~~~~~~~-----------~ 592 (788)
....+...-.||.+||.. + +.+++. .+++.. .||... -.+..+.+.+.. .
T Consensus 280 ~~en~a~pNYsFvrAHDsevQ~vI~~II~--~~i~~~-----~dg~t~--------t~d~l~qAf~iYnaD~~~~~K~Yt 344 (809)
T PF02324_consen 280 STENEAQPNYSFVRAHDSEVQTVIAQIIK--DKINPN-----SDGLTF--------TLDQLKQAFEIYNADQKKTDKKYT 344 (809)
T ss_dssp --SSESS-EEEES-BSSTTTHHHHHHHHH--HHT-TT-----TCTTC----------HHHHHHHHHHHHHHHTSSS-SSS
T ss_pred CcCCcccCceeeeecccHHHHHHHHHHHH--hhcCCc-----ccCccC--------CHHHHHHHHHHHHHHHHHhhhhhh
Confidence 012233456799999985 1 233332 111111 011100 000000111000 0
Q ss_pred HHHHHHHHHHHHhc-CCceEEecccccccCCCCCCCCcCCCCCccccccCcccCcchHHHHHHHHHHHHHhhCccCCCCC
Q 003901 593 RRQMRNFFLCLMVS-QGVPMISMGDEYGHTKGGNNNTYCHDNDINYFRWDKKEESKSDFFRFCCLLTKFRHECESLGLSD 671 (788)
Q Consensus 593 ~~~~r~a~alllt~-pGiP~Iy~GdE~G~~~~g~~n~y~~~~~~~~~~W~~~~~~~~~l~~~~r~Li~lRk~~~aL~~g~ 671 (788)
.-.+-.++|+||+= --||-+||||-+-... .|-. . ...-++-+-.|++-|.++-+=.+.
T Consensus 345 ~yNiPsaYAllLtNKDTVPRVYYGDLYtDdG-----QYMa------------~--KSpYyDaI~tLLKaRikYvaGGQt- 404 (809)
T PF02324_consen 345 QYNIPSAYALLLTNKDTVPRVYYGDLYTDDG-----QYMA------------T--KSPYYDAITTLLKARIKYVAGGQT- 404 (809)
T ss_dssp -S-HHHHHHHHHH-SSSEEEEEHHHHBESSS-----STTT------------S--B-TTHHHHHHHHHHHHHH--S-EE-
T ss_pred ccccHHHHHHHHhCCCCCceEEecccccccc-----hhhh------------h--cCchHHHHHHHHHHHHHhhcCCce-
Confidence 11244577888876 4899999999875432 1211 0 134477888999999987543211
Q ss_pred CCCccceeeccCCCCCCCC-CCCCcEEEEEEEcCC--------------CCEEEEEEeCCCC----cEEEECCC--C-CC
Q 003901 672 FPTADRLQWHGHAPGLPDW-SDKSRFVAFTLIDSV--------------KGEIYVAFNASHL----PVIISLPK--R-PG 729 (788)
Q Consensus 672 ~~~~~~~~~~~~~~~~~~~-~~~~~vlaf~r~~~~--------------~~~i~Vv~N~~~~----~~~v~Lp~--~-~g 729 (788)
+.-+ .. .+..+|+.=.|.+.+ .+..+||-|...- ..++.|.. . ..
T Consensus 405 ------M~~~-------~~~~~~~~vLtSVRyGkgam~a~d~G~~~tRt~Gi~vii~Nnp~l~l~~~d~v~lnMGaAHkN 471 (809)
T PF02324_consen 405 ------MAVT-------YLNGDNSGVLTSVRYGKGAMTATDTGTAETRTSGIGVIISNNPNLKLNSNDTVVLNMGAAHKN 471 (809)
T ss_dssp ------EEE---------EEETTTSEEEEEE-BTTBSSTT----CCCCT--EEEEEES-TT-B--TT-EEEEE--GGGTT
T ss_pred ------eeee-------cccCCCCceEEEEecCCCcCcccccCCccceeceeEEEEcCCcccccCCCCeEEEecchhhcc
Confidence 1100 00 023468887886542 1235555555542 23444443 2 36
Q ss_pred CCeEEEecCCC
Q 003901 730 YRWEPLVDTSK 740 (788)
Q Consensus 730 ~~w~~l~d~~~ 740 (788)
+.++.|+.+..
T Consensus 472 Q~YR~llltT~ 482 (809)
T PF02324_consen 472 QAYRPLLLTTK 482 (809)
T ss_dssp -EEEEEEEEES
T ss_pred ccchhhhhccc
Confidence 77888776544
No 73
>PF10438 Cyc-maltodext_C: Cyclo-malto-dextrinase C-terminal domain; InterPro: IPR019492 This domain is at the very C terminus of cyclo-malto-dextrinase proteins and consists of 8 beta strands, is largely globular and appears to help stabilise the active sites created by upstream domains, IPR015171 from INTERPRO, and IPR006047 from INTERPRO. Cyclo-malto-dextrinases hydrolyse cyclodextrans to maltose and glucose and catalyse trans-glycosylation of oligosaccharides to the C3-, C4- or C6-hydroxyl groups of various acceptor sugar molecules. ; PDB: 3EDK_B 3EDD_A 3EDJ_B 3EDE_A 1H3G_B 3EDF_B.
Probab=96.46 E-value=0.0029 Score=53.38 Aligned_cols=70 Identities=11% Similarity=0.086 Sum_probs=44.7
Q ss_pred CCcEEEEEEEcCCCCEEEEEEeCCCCcEEEECCCCCCCCeEEEecCCCCCCCCccCCCCchhhhhhhhcCCCCCCeeEEe
Q 003901 693 KSRFVAFTLIDSVKGEIYVAFNASHLPVIISLPKRPGYRWEPLVDTSKPEPFDFLSSDLPAKEIAIKQYAPFLDANLYPM 772 (788)
Q Consensus 693 ~~~vlaf~r~~~~~~~i~Vv~N~~~~~~~v~Lp~~~g~~w~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 772 (788)
.+++++|.|..++ ++++|++|.+++++++++.. +.+++.. .....+++++..- .-...++|
T Consensus 8 ~~gvYvYfR~~~~-~tVmVilN~n~~~~~ldl~r-----y~E~l~~-~~~~~diltg~~i------------~l~~~l~l 68 (78)
T PF10438_consen 8 QDGVYVYFRYYDG-KTVMVILNKNDKEQTLDLKR-----YAEVLGG-FTSAKDILTGKTI------------DLSKNLTL 68 (78)
T ss_dssp BTTEEEEEEEESS-EEEEEEEE-SSS-EEEEGGG-----GHHHHTT---EEEETTT--EE------------E-SSEEEE
T ss_pred cCCEEEEEEEcCC-CEEEEEEcCCCCCeEEcHHH-----HHHhhCC-CcceEECCCCCEE------------ecCCcEEE
Confidence 5789999999876 89999999999999998863 3333322 1223344444311 11358999
Q ss_pred eCCeEEEEE
Q 003901 773 LSYSSIILL 781 (788)
Q Consensus 773 ~~~s~~vl~ 781 (788)
||++++||.
T Consensus 69 ~~~~~~ILe 77 (78)
T PF10438_consen 69 PPKSVLILE 77 (78)
T ss_dssp -TTEEEEEE
T ss_pred CCCceEEEE
Confidence 999999985
No 74
>cd06591 GH31_xylosidase_XylS XylS is a glycosyl hydrolase family 31 (GH31) alpha-xylosidase found in prokaryotes, eukaryotes, and archaea, that catalyzes the release of alpha-xylose from the non-reducing terminal side of the alpha-xyloside substrate. XylS has been characterized in Sulfolobus solfataricus where it hydrolyzes isoprimeverose, the p-nitrophenyl-beta derivative of isoprimeverose, and xyloglucan oligosaccharides, and has transxylosidic activity. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The XylS family corresponds to subgroup 3 in the Ernst et al classification of GH31 enzymes.
Probab=96.46 E-value=0.0062 Score=66.37 Aligned_cols=134 Identities=15% Similarity=0.286 Sum_probs=81.1
Q ss_pred CHHHHHhhhHHHHHc--CCCeEEECcccccCccCcccCCCCCCCcccCCCCCCCCCCCcHHHHHHHHHHHHHcCCEEEEE
Q 003901 262 TYLGVVEKLDHLKDL--GINCLELMPCHEFNELEYFSYNSVLGDYNYSSAGIRNCGHDAINEFKLLVREAHKRGIEVVMD 339 (788)
Q Consensus 262 ~~~gl~~~L~yLk~L--Gvt~I~L~Pi~~~~~~~~~~~~~~~~~wgY~~~~~~~~~~G~~~elk~lV~~aH~~Gi~VilD 339 (788)
+-..+.+.++.+++. -+++|+|=- . .+... ..+.|.++.. +|- +.++||+++|++|++||+-
T Consensus 22 ~~~ev~~~~~~~~~~~iP~d~i~lD~----~---~~~~~-~~~~f~~d~~-----~FP---dp~~mi~~L~~~G~kv~~~ 85 (319)
T cd06591 22 TQEELLDVAKEYRKRGIPLDVIVQDW----F---YWPKQ-GWGEWKFDPE-----RFP---DPKAMVRELHEMNAELMIS 85 (319)
T ss_pred CHHHHHHHHHHHHHhCCCccEEEEec----h---hhcCC-CceeEEEChh-----hCC---CHHHHHHHHHHCCCEEEEE
Confidence 456677777777776 456666531 0 00000 0112334433 332 3689999999999999996
Q ss_pred eeeccccCCCCCCCccccCCCCCccceeeCCCCCcc--cCCCCccccCCCCHHHHHHHHHHHHHHHHhcCccEEEEeccc
Q 003901 340 VVFNHTVEGNDKGPILSFRGVDNSVYYMLAPKGEFY--NYSGCGNTFNCNHPVVRQFIVDCLRYWVTEMHVDGFRFDLAS 417 (788)
Q Consensus 340 vV~NH~~~~~~~~~~~~~~~~~~~~yy~~~~~g~~~--~~~g~~~dln~~~p~vr~~i~d~l~~W~~e~gVDGFR~D~a~ 417 (788)
+. -+...+++. ++......|+..+.+|.-+ .|.|...-+|+.||++++...+.++..+.++|||||=+|...
T Consensus 86 i~-P~v~~~~~~-----y~e~~~~g~~v~~~~g~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~~~~Gvdg~w~D~~E 159 (319)
T cd06591 86 IW-PTFGPETEN-----YKEMDEKGYLIKTDRGPRVTMQFGGNTRFYDATNPEAREYYWKQLKKNYYDKGVDAWWLDAAE 159 (319)
T ss_pred ec-CCcCCCChh-----HHHHHHCCEEEEcCCCCeeeeeCCCCccccCCCCHHHHHHHHHHHHHHhhcCCCcEEEecCCC
Confidence 54 334333221 1212224455555554422 233434579999999999988877665568999999999875
No 75
>PF13200 DUF4015: Putative glycosyl hydrolase domain
Probab=96.38 E-value=0.033 Score=59.93 Aligned_cols=135 Identities=17% Similarity=0.246 Sum_probs=82.0
Q ss_pred cCHHHHHhhhHHHHHcCCCeEEECcccccCccCcccCCCCCCCcccCCCCC----CCCCCCcHHHHHHHHHHHHHcCCEE
Q 003901 261 GTYLGVVEKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYNYSSAGI----RNCGHDAINEFKLLVREAHKRGIEV 336 (788)
Q Consensus 261 G~~~gl~~~L~yLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~wgY~~~~~----~~~~~G~~~elk~lV~~aH~~Gi~V 336 (788)
|+=..+.+.|+.|++-|+|+|-+ +.-... | .=.|.+... ....-..+.|+++|++.||++||.+
T Consensus 10 ~~~~~~~~~~~~i~~t~lNavVI----DvKdd~--G------~i~y~s~~~~~~~~ga~~~~i~D~~~l~~~l~e~gIY~ 77 (316)
T PF13200_consen 10 GSPERLDKLLDLIKRTELNAVVI----DVKDDD--G------NITYDSQVPLAREIGAVKPYIKDLKALVKKLKEHGIYP 77 (316)
T ss_pred CCHHHHHHHHHHHHhcCCceEEE----EEecCC--c------eEEecCCCchhhhcccccccccCHHHHHHHHHHCCCEE
Confidence 44455666789999999999953 321110 0 002222111 1111122678999999999999999
Q ss_pred EEEeeeccccCCCCCCCccccCCCCCccceeeCCCCC-cccCCCCccccCCCCHHHHHHHHHHHHHHHHhcCccEEEEec
Q 003901 337 VMDVVFNHTVEGNDKGPILSFRGVDNSVYYMLAPKGE-FYNYSGCGNTFNCNHPVVRQFIVDCLRYWVTEMHVDGFRFDL 415 (788)
Q Consensus 337 ilDvV~NH~~~~~~~~~~~~~~~~~~~~yy~~~~~g~-~~~~~g~~~dln~~~p~vr~~i~d~l~~W~~e~gVDGFR~D~ 415 (788)
|.=+|.=- +. .+.. .+++|.....+|. +.+..+ ..=+|-.+++||+|+++.++..+ .+|+|.+-||-
T Consensus 78 IARIv~Fk---D~----~la~---~~pe~av~~~~G~~w~d~~~-~~WvnP~~~evw~Y~i~IA~Eaa-~~GFdEIqfDY 145 (316)
T PF13200_consen 78 IARIVVFK---DP----VLAE---AHPEWAVKTKDGSVWRDNEG-EAWVNPYSKEVWDYNIDIAKEAA-KLGFDEIQFDY 145 (316)
T ss_pred EEEEEEec---Ch----HHhh---hChhhEEECCCCCcccCCCC-CccCCCCCHHHHHHHHHHHHHHH-HcCCCEEEeee
Confidence 99988411 11 0110 1233333333333 222222 12356778999999999999998 89999999998
Q ss_pred cccc
Q 003901 416 ASIM 419 (788)
Q Consensus 416 a~~l 419 (788)
+..=
T Consensus 146 IRFP 149 (316)
T PF13200_consen 146 IRFP 149 (316)
T ss_pred eecC
Confidence 7644
No 76
>PRK14508 4-alpha-glucanotransferase; Provisional
Probab=96.23 E-value=0.15 Score=58.87 Aligned_cols=25 Identities=28% Similarity=0.476 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHcCCEEEEEeeec
Q 003901 319 INEFKLLVREAHKRGIEVVMDVVFN 343 (788)
Q Consensus 319 ~~elk~lV~~aH~~Gi~VilDvV~N 343 (788)
-++++++.+.||++||++|-|+-+-
T Consensus 197 ~~Q~~~~~~yA~~~Gi~L~gDLpig 221 (497)
T PRK14508 197 FRQWKALKAYANDKGIEIIGDLPIY 221 (497)
T ss_pred HHHHHHHHHHHHHCCCEEEEeeecc
Confidence 4568888899999999999999864
No 77
>cd06604 GH31_glucosidase_II_MalA Alpha-glucosidase II (alpha-D-glucoside glucohydrolase) is a glycosyl hydrolase family 31 (GH31) enzyme, found in bacteria and plants, which has exo-alpha-1,4-glucosidase and oligo-1,6-glucosidase activities. Alpha-glucosidase II has been characterized in Bacillus thermoamyloliquefaciens where it forms a homohexamer. This family also includes the MalA alpha-glucosidase from Sulfolobus sulfataricus and the AglA alpha-glucosidase from Picrophilus torridus. MalA is part of the carbohydrate-metabolizing machinery that allows this organism to utilize carbohydrates, such as maltose, as the sole carbon and energy source.
Probab=96.19 E-value=0.036 Score=60.98 Aligned_cols=134 Identities=19% Similarity=0.247 Sum_probs=83.2
Q ss_pred CHHHHHhhhHHHHHcCC--CeEEECcccccCccCcccCCCCCCCcccCCCCCCCCCCCcHHHHHHHHHHHHHcCCEEEEE
Q 003901 262 TYLGVVEKLDHLKDLGI--NCLELMPCHEFNELEYFSYNSVLGDYNYSSAGIRNCGHDAINEFKLLVREAHKRGIEVVMD 339 (788)
Q Consensus 262 ~~~gl~~~L~yLk~LGv--t~I~L~Pi~~~~~~~~~~~~~~~~~wgY~~~~~~~~~~G~~~elk~lV~~aH~~Gi~VilD 339 (788)
+-..+.+.++.+++.|| ++|||=.-+.. .+..|.+++. +|- +.++||+++|++|++|++-
T Consensus 22 ~~~~v~~~~~~~~~~~iP~d~i~lD~~~~~----------~~~~f~~d~~-----~fP---dp~~m~~~l~~~g~~~~~~ 83 (339)
T cd06604 22 PEEEVREIADEFRERDIPCDAIYLDIDYMD----------GYRVFTWDKE-----RFP---DPKELIKELHEQGFKVVTI 83 (339)
T ss_pred CHHHHHHHHHHHHHhCCCcceEEECchhhC----------CCCceeeccc-----cCC---CHHHHHHHHHHCCCEEEEE
Confidence 44667777888888775 56776432221 1122344443 232 4689999999999999977
Q ss_pred eeeccccCCCCCCCccccCCCCCccceeeCCCCCcc---cCCCCccccCCCCHHHHHHHHHHHHHHHHhcCccEEEEecc
Q 003901 340 VVFNHTVEGNDKGPILSFRGVDNSVYYMLAPKGEFY---NYSGCGNTFNCNHPVVRQFIVDCLRYWVTEMHVDGFRFDLA 416 (788)
Q Consensus 340 vV~NH~~~~~~~~~~~~~~~~~~~~yy~~~~~g~~~---~~~g~~~dln~~~p~vr~~i~d~l~~W~~e~gVDGFR~D~a 416 (788)
+.+ |...+.. .+ .+.......||..+.+|..+ .|.|...-+|+.||++++...+.++..+ +.|||||=+|..
T Consensus 84 ~~P-~v~~~~~-~~--~~~e~~~~g~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~-~~Gvdg~w~D~~ 158 (339)
T cd06604 84 IDP-GVKVDPG-YD--VYEEGLENDYFVKDPDGELYIGRVWPGLSAFPDFTNPKVREWWGSLYKKFV-DLGVDGIWNDMN 158 (339)
T ss_pred EeC-ceeCCCC-Ch--HHHHHHHCCeEEECCCCCEEEEEecCCCccccCCCChHHHHHHHHHHHHHh-hCCCceEeecCC
Confidence 653 2221110 01 11111123455555555432 2334344579999999999999999887 899999999976
Q ss_pred cc
Q 003901 417 SI 418 (788)
Q Consensus 417 ~~ 418 (788)
..
T Consensus 159 Ep 160 (339)
T cd06604 159 EP 160 (339)
T ss_pred Cc
Confidence 53
No 78
>cd06600 GH31_MGAM-like This family includes the following closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), lysosomal acid alpha-glucosidase (GAA), neutral alpha-glucosidase C (GANC), the alpha subunit of neutral alpha-glucosidase AB (GANAB), and alpha-glucosidase II. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal do
Probab=96.04 E-value=0.015 Score=63.24 Aligned_cols=134 Identities=19% Similarity=0.238 Sum_probs=82.5
Q ss_pred CHHHHHhhhHHHHHcCC--CeEEECcccccCccCcccCCCCCCCcccCCCCCCCCCCCcHHHHHHHHHHHHHcCCEEEEE
Q 003901 262 TYLGVVEKLDHLKDLGI--NCLELMPCHEFNELEYFSYNSVLGDYNYSSAGIRNCGHDAINEFKLLVREAHKRGIEVVMD 339 (788)
Q Consensus 262 ~~~gl~~~L~yLk~LGv--t~I~L~Pi~~~~~~~~~~~~~~~~~wgY~~~~~~~~~~G~~~elk~lV~~aH~~Gi~VilD 339 (788)
+-..+.+-++.+++.+| +.|||=.=+- ..+..|.++.. +|- +.++||+++|++|++|++-
T Consensus 22 ~~~~v~~~~~~~~~~~iP~d~i~lD~~~~----------~~~~~f~~d~~-----~FP---dp~~~i~~l~~~g~k~~~~ 83 (317)
T cd06600 22 PQDKVVEVVDIMQKEGFPYDVVFLDIHYM----------DSYRLFTWDPY-----RFP---EPKKLIDELHKRNVKLVTI 83 (317)
T ss_pred CHHHHHHHHHHHHHcCCCcceEEEChhhh----------CCCCceeechh-----cCC---CHHHHHHHHHHCCCEEEEE
Confidence 45667777777877665 5666532110 01122334433 232 4689999999999999996
Q ss_pred eeeccccCCCCCCCccccCCCCCccceeeCCCCCcc---cCCCCccccCCCCHHHHHHHHHHHHHHHHhcCccEEEEecc
Q 003901 340 VVFNHTVEGNDKGPILSFRGVDNSVYYMLAPKGEFY---NYSGCGNTFNCNHPVVRQFIVDCLRYWVTEMHVDGFRFDLA 416 (788)
Q Consensus 340 vV~NH~~~~~~~~~~~~~~~~~~~~yy~~~~~g~~~---~~~g~~~dln~~~p~vr~~i~d~l~~W~~e~gVDGFR~D~a 416 (788)
+.+- ...+... +. +.......||...++|..+ .|.|...-+|+.||++++...+.++..+.++|||||=+|..
T Consensus 84 ~~P~-i~~~~~~-~~--~~~~~~~~~~v~~~~g~~~~~~~w~G~~~~~Dftnp~a~~ww~~~~~~~~~~~gvdg~w~D~~ 159 (317)
T cd06600 84 VDPG-IRVDQNY-SP--FLSGMDKGKFCEIESGELFVGKMWPGTTVYPDFTNPDTREWWAGLFSEWLNSQGVDGIWLDMN 159 (317)
T ss_pred eecc-ccCCCCC-hH--HHHHHHCCEEEECCCCCeEEEeecCCCccccCCCChHHHHHHHHHHHHHhhcCCCceEEeeCC
Confidence 6543 3222111 11 1111123455555555422 23343446899999999999999999888899999999976
Q ss_pred c
Q 003901 417 S 417 (788)
Q Consensus 417 ~ 417 (788)
.
T Consensus 160 E 160 (317)
T cd06600 160 E 160 (317)
T ss_pred C
Confidence 5
No 79
>PRK10426 alpha-glucosidase; Provisional
Probab=95.99 E-value=0.047 Score=64.94 Aligned_cols=140 Identities=12% Similarity=0.163 Sum_probs=85.4
Q ss_pred HHHHhhhHHHHHcC--CCeEEECcccccCccCcccCCCCCCC--cccCCCCCCCCCCCcHHHHHHHHHHHHHcCCEEEEE
Q 003901 264 LGVVEKLDHLKDLG--INCLELMPCHEFNELEYFSYNSVLGD--YNYSSAGIRNCGHDAINEFKLLVREAHKRGIEVVMD 339 (788)
Q Consensus 264 ~gl~~~L~yLk~LG--vt~I~L~Pi~~~~~~~~~~~~~~~~~--wgY~~~~~~~~~~G~~~elk~lV~~aH~~Gi~VilD 339 (788)
..+.+.++.+++.| +++|||- -+. ....... +...+ |.++... | -+.++||+++|++|++|++-
T Consensus 221 ~~v~~v~~~~r~~~IP~d~i~ld-dw~--~~~~~~~-g~~~~~~~~~d~~~-----F---Pdp~~mi~~L~~~G~k~v~~ 288 (635)
T PRK10426 221 EVVQKKLDTMRNAGVKVNGIWAQ-DWS--GIRMTSF-GKRLMWNWKWDSER-----Y---PQLDSRIKQLNEEGIQFLGY 288 (635)
T ss_pred HHHHHHHHHHHHcCCCeeEEEEe-ccc--ccccccc-cccccccceEChhh-----C---CCHHHHHHHHHHCCCEEEEE
Confidence 55777788888877 6888884 111 1100000 01111 2233322 2 24788999999999999998
Q ss_pred eeeccccCCCCCCCccccCCCCCccceeeCCCCCccc---CCCCccccCCCCHHHHHHHHHHHHHHHHhcCccEEEEecc
Q 003901 340 VVFNHTVEGNDKGPILSFRGVDNSVYYMLAPKGEFYN---YSGCGNTFNCNHPVVRQFIVDCLRYWVTEMHVDGFRFDLA 416 (788)
Q Consensus 340 vV~NH~~~~~~~~~~~~~~~~~~~~yy~~~~~g~~~~---~~g~~~dln~~~p~vr~~i~d~l~~W~~e~gVDGFR~D~a 416 (788)
+-+-- ..+.+ .++......|+..+.+|.-+. +.+...-+|+.||++|+...+.++..+.++|||||=.|.-
T Consensus 289 i~P~v-~~~~~-----~y~e~~~~gy~vk~~~g~~~~~~~~~~~~~~~Dftnp~ar~Ww~~~~~~~~~~~Gvdg~w~D~~ 362 (635)
T PRK10426 289 INPYL-ASDGD-----LCEEAAEKGYLAKDADGGDYLVEFGEFYAGVVDLTNPEAYEWFKEVIKKNMIGLGCSGWMADFG 362 (635)
T ss_pred EcCcc-CCCCH-----HHHHHHHCCcEEECCCCCEEEeEecCCCceeecCCCHHHHHHHHHHHHHHHhhcCCCEEeeeCC
Confidence 76432 22211 111112234666666554331 2222346899999999999998877777999999999987
Q ss_pred ccccc
Q 003901 417 SIMTR 421 (788)
Q Consensus 417 ~~l~~ 421 (788)
..++.
T Consensus 363 E~~p~ 367 (635)
T PRK10426 363 EYLPT 367 (635)
T ss_pred CCCCC
Confidence 76543
No 80
>cd02859 AMPKbeta_GBD_like AMP-activated protein kinase (AMPK) beta subunit glycogen binding domain (GBD). AMPK is a metabolic stress sensing protein that senses AMP/ATP and has recently been found to act as a glycogen sensor as well. The protein functions as a alpha-beta-gamma heterotrimer. This domain is the glycogen binding domain of the beta subunit.
Probab=95.87 E-value=0.019 Score=48.79 Aligned_cols=55 Identities=15% Similarity=0.169 Sum_probs=40.0
Q ss_pred cEEEEEEcCCCCEEEEEEEeCCCccCCceeeEEecccccCCCCCEEEEEEcCCCCCceeeEEEcCC
Q 003901 106 GVNFSIFSSNAVSATLCLITLSDLQENKVTEEIALDSFANKTGDVWHVFLKGDFKDMLYGYKFDGK 171 (788)
Q Consensus 106 ~~~F~vwap~A~~V~L~l~~~~d~~~~~~~~~~~l~~~~~~~~gvW~~~i~~~~~~~~Y~y~~~g~ 171 (788)
.|+|+..+ .|++|.|. |+|++|.. .+||.+. .++ |.+.++-....+.|+|.|+|.
T Consensus 3 ~v~f~~~~-~a~~V~v~----G~F~~W~~--~~pm~~~---~~~-~~~~~~L~~g~y~YkF~Vdg~ 57 (79)
T cd02859 3 PTTFVWPG-GGKEVYVT----GSFDNWKK--KIPLEKS---GKG-FSATLRLPPGKYQYKFIVDGE 57 (79)
T ss_pred EEEEEEcC-CCcEEEEE----EEcCCCCc--cccceEC---CCC-cEEEEEcCCCCEEEEEEECCE
Confidence 47899888 89999999 89998875 4677542 334 999886433445777778764
No 81
>PF13199 Glyco_hydro_66: Glycosyl hydrolase family 66; PDB: 3VMO_A 3VMN_A 3VMP_A.
Probab=95.78 E-value=0.08 Score=61.39 Aligned_cols=146 Identities=13% Similarity=0.171 Sum_probs=72.8
Q ss_pred CHHHHHhhhHHHHHcCCCeEEECcccccCccCcccCC-CCCCCcccCCCCCCCCCCCcHHHHHHHHHHHHHcCCEEEEEe
Q 003901 262 TYLGVVEKLDHLKDLGINCLELMPCHEFNELEYFSYN-SVLGDYNYSSAGIRNCGHDAINEFKLLVREAHKRGIEVVMDV 340 (788)
Q Consensus 262 ~~~gl~~~L~yLk~LGvt~I~L~Pi~~~~~~~~~~~~-~~~~~wgY~~~~~~~~~~G~~~elk~lV~~aH~~Gi~VilDv 340 (788)
+.....+.|+.|+++-||.|++==.+.-......... ....-| . + ..-+.=..+-+|.+|++||+.||++|.=.
T Consensus 116 ~~~~~~~~i~~L~~yHIN~~QFYDW~~rH~~Pl~~~~~~~~~~w--~--D-~~~r~i~~~~Vk~yI~~ah~~Gmkam~Yn 190 (559)
T PF13199_consen 116 SAEDIEAEIDQLNRYHINGLQFYDWMYRHHKPLPGTNGQPDQTW--T--D-WANRQISTSTVKDYINAAHKYGMKAMAYN 190 (559)
T ss_dssp GHHHHHHHHHHHHHTT--EEEETS--SBTTB-S-SSS-EEE-TT-----T-TT--EEEHHHHHHHHHHHHHTT-EEEEEE
T ss_pred CchhHHHHHHHHHhhCcCeEEEEeeccccCCcCCCCCCchhhhh--h--h-hcCCEehHHHHHHHHHHHHHcCcceehhH
Confidence 5677788899999999999996322111000000000 000111 0 0 01122347789999999999999998633
Q ss_pred eeccccCCCCCCCccccCCCCCccceeeCCCCC----cccCC-CCc---cccCCCCHHHHHHHHHHHHHHHHhcCccEEE
Q 003901 341 VFNHTVEGNDKGPILSFRGVDNSVYYMLAPKGE----FYNYS-GCG---NTFNCNHPVVRQFIVDCLRYWVTEMHVDGFR 412 (788)
Q Consensus 341 V~NH~~~~~~~~~~~~~~~~~~~~yy~~~~~g~----~~~~~-g~~---~dln~~~p~vr~~i~d~l~~W~~e~gVDGFR 412 (788)
-..-...+-. ..| ..+.|+...+++. ..... ++. --+|..|+.=|++|++.+...++.+|+|||.
T Consensus 191 miyaa~~~~~------~~g-v~~eW~ly~d~~~~~~~~~~l~~~w~s~lyl~dP~N~~WQ~yI~~q~~~~~~~~gFDG~h 263 (559)
T PF13199_consen 191 MIYAANNNYE------EDG-VSPEWGLYKDDSHSNQDTYDLPDGWPSDLYLMDPGNPEWQNYIINQMNKAIQNFGFDGWH 263 (559)
T ss_dssp ESSEEETT--------S---SS-GGBEEESSSBTSB-EEEETT-E--EEEEB-TT-HHHHHHHHHHHHHHHHHHT--EEE
T ss_pred hhhccccCcc------ccc-CCchhhhhhccCCCccceeecCcccccceEEecCCCHHHHHHHHHHHHHHHHccCCceEe
Confidence 2221111100 011 1223433322221 11121 111 2368899999999999999999999999999
Q ss_pred Eeccccc
Q 003901 413 FDLASIM 419 (788)
Q Consensus 413 ~D~a~~l 419 (788)
+|..+..
T Consensus 264 lDq~G~~ 270 (559)
T PF13199_consen 264 LDQLGNR 270 (559)
T ss_dssp EE-S--E
T ss_pred eeccCCC
Confidence 9998844
No 82
>PRK14582 pgaB outer membrane N-deacetylase; Provisional
Probab=95.71 E-value=0.11 Score=61.45 Aligned_cols=138 Identities=9% Similarity=-0.019 Sum_probs=81.6
Q ss_pred CHHHHHhhhHHHHHcCCCeEEECcccccCccCcccCCCCCCCcccCCCCCCCCCCCcHHHHHHHHHHHHHcCCEEEEEee
Q 003901 262 TYLGVVEKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYNYSSAGIRNCGHDAINEFKLLVREAHKRGIEVVMDVV 341 (788)
Q Consensus 262 ~~~gl~~~L~yLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~wgY~~~~~~~~~~G~~~elk~lV~~aH~~Gi~VilDvV 341 (788)
+-+.+...|+.||++|+|+|+|--+.+-.+...+ ...+..|.|-+. .++.|... .-.+ +|++|++|..-+-
T Consensus 332 q~~~L~~lLdrlk~~G~ntV~lqafadp~gd~~~--~s~yfP~~~lp~--r~d~f~~~---aw~l--~~r~~v~v~AWmp 402 (671)
T PRK14582 332 QDRNIDVLIQRVKDMQISTVYLQAFADPDGDGLV--KELYFPNRLLPM--RADLFNRV---AWQL--RTRAGVNVYAWMP 402 (671)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEEeccCCCCCccc--cccccCcccccc--ccCCcCHH---HHHH--HHhhCCEEEEecc
Confidence 3567778899999999999999887654433322 223333444443 33444432 2222 8999999987764
Q ss_pred eccccCCCCCCCccccCCCCCccceeeCCCCCccc-CCCCccccCCCCHHHHHHHHHHHHHHHHhcCccEEEEeccccc
Q 003901 342 FNHTVEGNDKGPILSFRGVDNSVYYMLAPKGEFYN-YSGCGNTFNCNHPVVRQFIVDCLRYWVTEMHVDGFRFDLASIM 419 (788)
Q Consensus 342 ~NH~~~~~~~~~~~~~~~~~~~~yy~~~~~g~~~~-~~g~~~dln~~~p~vr~~i~d~l~~W~~e~gVDGFR~D~a~~l 419 (788)
+=-..-... .+.. ... +..+.-.. -..+...|+--+|+||+.|.++..-.++.+.|||+-||-=..+
T Consensus 403 ~~~~~~~~~-~~~~--------~~~--~~~~~~~~~~~~~~~rl~P~~pe~r~~i~~i~~dla~~~~~dGilf~Dd~~l 470 (671)
T PRK14582 403 VLSFDLDPT-LPRV--------KRL--DTGEGKAQIHPEQYRRLSPFDDRVRAQVGMLYEDLAGHAAFDGILFHDDAVL 470 (671)
T ss_pred ceeeccCCC-cchh--------hhc--cccCCccccCCCCCcCCCCCCHHHHHHHHHHHHHHHHhCCCceEEecccccc
Confidence 432221100 0000 000 00000000 0011234888899999999999999998899999999754444
No 83
>PLN02635 disproportionating enzyme
Probab=95.69 E-value=0.049 Score=62.86 Aligned_cols=24 Identities=17% Similarity=0.382 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHcCCEEEEEeee
Q 003901 319 INEFKLLVREAHKRGIEVVMDVVF 342 (788)
Q Consensus 319 ~~elk~lV~~aH~~Gi~VilDvV~ 342 (788)
-.+++++-+.||++||++|-|+-+
T Consensus 223 ~~Qw~~l~~yA~~~Gi~L~gDlpi 246 (538)
T PLN02635 223 QRQWQAVRSYANEKGISIIGDMPI 246 (538)
T ss_pred HHHHHHHHHHHHHCCCEEEEEeec
Confidence 346788889999999999999985
No 84
>PF08533 Glyco_hydro_42C: Beta-galactosidase C-terminal domain; InterPro: IPR013739 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found at the C terminus of beta-galactosidase enzymes that belong to the glycosyl hydrolase 42 family []. ; GO: 0004565 beta-galactosidase activity; PDB: 1KWK_A 1KWG_A.
Probab=95.44 E-value=0.032 Score=44.39 Aligned_cols=54 Identities=17% Similarity=0.250 Sum_probs=28.9
Q ss_pred EEEEEcCCCCEEEEEEeCCCCcEEEECCCCCCCCeEEEecCCCCCCCCccCCCCchhhhhhhhcCCCCCCeeEEeeCCeE
Q 003901 698 AFTLIDSVKGEIYVAFNASHLPVIISLPKRPGYRWEPLVDTSKPEPFDFLSSDLPAKEIAIKQYAPFLDANLYPMLSYSS 777 (788)
Q Consensus 698 af~r~~~~~~~i~Vv~N~~~~~~~v~Lp~~~g~~w~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~ 777 (788)
+-.|.++ +..+++++|+++++++++||. .+.++++.... .+.++|+|+.+
T Consensus 4 v~~R~~~-~~~y~F~~N~s~~~~~v~l~~----~~~dll~g~~~-------------------------~~~~~L~p~~v 53 (58)
T PF08533_consen 4 VTVREND-GGRYLFLLNFSDEPQTVTLPE----SYTDLLTGETV-------------------------SGGLTLPPYGV 53 (58)
T ss_dssp EEE-----ETTEEEEEE-SSS-EE----T----T-EEEES--------------------------------SEE-TTEE
T ss_pred EEEEEcC-CCEEEEEEECCCCCEEEEcCC----CceecccCcce-------------------------eeEEEECCCEE
Confidence 3345433 478999999999999999965 57888754221 13389999999
Q ss_pred EEEE
Q 003901 778 IILL 781 (788)
Q Consensus 778 ~vl~ 781 (788)
.||.
T Consensus 54 ~Vl~ 57 (58)
T PF08533_consen 54 RVLK 57 (58)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9985
No 85
>PRK10658 putative alpha-glucosidase; Provisional
Probab=95.41 E-value=0.029 Score=66.86 Aligned_cols=93 Identities=14% Similarity=0.285 Sum_probs=65.6
Q ss_pred HHHHHHHHHHHcCCEEEEEeeeccccCCCCCCCccccCCCCCccceeeCCCCCcc---cCCCCccccCCCCHHHHHHHHH
Q 003901 321 EFKLLVREAHKRGIEVVMDVVFNHTVEGNDKGPILSFRGVDNSVYYMLAPKGEFY---NYSGCGNTFNCNHPVVRQFIVD 397 (788)
Q Consensus 321 elk~lV~~aH~~Gi~VilDvV~NH~~~~~~~~~~~~~~~~~~~~yy~~~~~g~~~---~~~g~~~dln~~~p~vr~~i~d 397 (788)
+.++||+++|++|++|++-+.+ +...+++. ++......|+..+++|..+ .|.+...-+|+.||++|+...+
T Consensus 326 dp~~mi~~L~~~G~k~~~~i~P-~i~~~s~~-----f~e~~~~gy~vk~~~G~~~~~~~W~g~~~~~Dftnp~ar~W~~~ 399 (665)
T PRK10658 326 DPEGMLKRLKAKGLKICVWINP-YIAQKSPL-----FKEGKEKGYLLKRPDGSVWQWDKWQPGMAIVDFTNPDACKWYAD 399 (665)
T ss_pred CHHHHHHHHHHCCCEEEEeccC-CcCCCchH-----HHHHHHCCeEEECCCCCEeeeeecCCCceeecCCCHHHHHHHHH
Confidence 4678999999999999987654 23322211 1111223466666666543 2444445689999999999999
Q ss_pred HHHHHHHhcCccEEEEecccccc
Q 003901 398 CLRYWVTEMHVDGFRFDLASIMT 420 (788)
Q Consensus 398 ~l~~W~~e~gVDGFR~D~a~~l~ 420 (788)
.++.++ ++|||||-.|....++
T Consensus 400 ~~~~l~-d~Gvdgfw~D~gE~~p 421 (665)
T PRK10658 400 KLKGLL-DMGVDCFKTDFGERIP 421 (665)
T ss_pred HHHHHH-hcCCcEEEecCCceee
Confidence 999987 8999999999776554
No 86
>smart00632 Aamy_C Aamy_C domain.
Probab=95.39 E-value=0.079 Score=45.25 Aligned_cols=72 Identities=14% Similarity=0.164 Sum_probs=44.6
Q ss_pred CCCCcEEEEEEEcCCCCEEEEEEeCCCCcEEEECCC-CCCCCeEEEecCCCCCCCCccCCCCchhhhhhhhcCCCCCCee
Q 003901 691 SDKSRFVAFTLIDSVKGEIYVAFNASHLPVIISLPK-RPGYRWEPLVDTSKPEPFDFLSSDLPAKEIAIKQYAPFLDANL 769 (788)
Q Consensus 691 ~~~~~vlaf~r~~~~~~~i~Vv~N~~~~~~~v~Lp~-~~g~~w~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 769 (788)
..++.+++|.|. +..+|++|.+...++..+.+ .+.+.|++++.... .+. .+.+. ..+...
T Consensus 5 ~~~~~~laF~Rg----~~g~VaiN~~~~~~~~~~~t~lp~G~Y~d~l~g~~-------~g~----~v~V~----~~G~~~ 65 (81)
T smart00632 5 DNGDNQIAFERG----SKGFVAINRSDSDLTITLQTSLPAGTYCDVISGLC-------TGK----SVTVG----SNGIAT 65 (81)
T ss_pred ECCCeEEEEECC----CeEEEEEECCCCceEEEEeecCCCcceEEEecCcc-------cCC----EEEEC----CCCEEE
Confidence 345569999993 56789999998777766644 33347988886411 111 00010 013468
Q ss_pred EEeeCCe-EEEEE
Q 003901 770 YPMLSYS-SIILL 781 (788)
Q Consensus 770 ~~v~~~s-~~vl~ 781 (788)
++|||.+ ++|++
T Consensus 66 ~~l~~~~~v~i~~ 78 (81)
T smart00632 66 FTLPAGGAVAIHV 78 (81)
T ss_pred EEECCCCeEEEEE
Confidence 9999999 55544
No 87
>PF01055 Glyco_hydro_31: Glycosyl hydrolases family 31 ; InterPro: IPR000322 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 31 GH31 from CAZY comprises enzymes with several known activities; alpha-glucosidase (3.2.1.20 from EC), alpha-galactosidase (3.2.1.22 from EC); glucoamylase (3.2.1.3 from EC), sucrase-isomaltase (3.2.1.48 from EC); isomaltase (3.2.1.10 from EC); alpha-xylosidase (3.2.1 from EC); alpha-glucan lyase (4.2.2.13 from EC). Glycoside hydrolase family 31 groups a number of glycosyl hydrolases on the basis of sequence similarities [, , ] An aspartic acid has been implicated [] in the catalytic activity of sucrase, isomaltase, and lysosomal alpha-glucosidase.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3L4U_A 3L4X_A 3L4W_A 3L4V_A 3CTT_A 2QMJ_A 2QLY_A 3L4Z_A 3L4Y_A 3L4T_A ....
Probab=95.38 E-value=0.018 Score=65.80 Aligned_cols=137 Identities=20% Similarity=0.329 Sum_probs=80.0
Q ss_pred CHHHHHhhhHHHHHcCC--CeEEECcccccCccCcccCCCCCCCcccCCCCCCCCCCCcHHHHHHHHHHHHHcCCEEEEE
Q 003901 262 TYLGVVEKLDHLKDLGI--NCLELMPCHEFNELEYFSYNSVLGDYNYSSAGIRNCGHDAINEFKLLVREAHKRGIEVVMD 339 (788)
Q Consensus 262 ~~~gl~~~L~yLk~LGv--t~I~L~Pi~~~~~~~~~~~~~~~~~wgY~~~~~~~~~~G~~~elk~lV~~aH~~Gi~VilD 339 (788)
+-..+.+-++.+++.|| ++|+|-.-+.. ....|.++.. +| .++++|++.+|++|++|++-
T Consensus 41 ~~~~v~~~i~~~~~~~iP~d~~~iD~~~~~----------~~~~f~~d~~-----~F---Pd~~~~~~~l~~~G~~~~~~ 102 (441)
T PF01055_consen 41 NQDEVREVIDRYRSNGIPLDVIWIDDDYQD----------GYGDFTWDPE-----RF---PDPKQMIDELHDQGIKVVLW 102 (441)
T ss_dssp SHHHHHHHHHHHHHTT--EEEEEE-GGGSB----------TTBTT-B-TT-----TT---TTHHHHHHHHHHTT-EEEEE
T ss_pred CHHHHHHHHHHHHHcCCCccceeccccccc----------cccccccccc-----cc---cchHHHHHhHhhCCcEEEEE
Confidence 35667777888887766 44443322111 1111333332 22 26899999999999999999
Q ss_pred eeeccccCCCCCCCccccCCCCCccceeeCCCCCcc---cCCCCccccCCCCHHHHHHHHHHHHHHHHhcCccEEEEecc
Q 003901 340 VVFNHTVEGNDKGPILSFRGVDNSVYYMLAPKGEFY---NYSGCGNTFNCNHPVVRQFIVDCLRYWVTEMHVDGFRFDLA 416 (788)
Q Consensus 340 vV~NH~~~~~~~~~~~~~~~~~~~~yy~~~~~g~~~---~~~g~~~dln~~~p~vr~~i~d~l~~W~~e~gVDGFR~D~a 416 (788)
+.+ +....+. ....++......|+..+++|..+ .|.|...-+|+.+|++++.+.+.++..++.+|||||-+|..
T Consensus 103 ~~P-~v~~~~~--~~~~~~~~~~~~~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~~~~Gvdg~w~D~~ 179 (441)
T PF01055_consen 103 VHP-FVSNDSP--DYENYDEAKEKGYLVKNPDGSPYIGRVWPGKGGFIDFTNPEARDWWKEQLKELLDDYGVDGWWLDFG 179 (441)
T ss_dssp EES-EEETTTT--B-HHHHHHHHTT-BEBCTTSSB-EEEETTEEEEEB-TTSHHHHHHHHHHHHHHHTTST-SEEEEEST
T ss_pred eec-ccCCCCC--cchhhhhHhhcCceeecccCCcccccccCCcccccCCCChhHHHHHHHHHHHHHhccCCceEEeecC
Confidence 887 3333221 01111111223455555555322 23334457899999999999999999997779999999986
Q ss_pred ccc
Q 003901 417 SIM 419 (788)
Q Consensus 417 ~~l 419 (788)
...
T Consensus 180 E~~ 182 (441)
T PF01055_consen 180 EPS 182 (441)
T ss_dssp TTB
T ss_pred Ccc
Confidence 544
No 88
>cd06598 GH31_transferase_CtsZ CtsZ (cyclic tetrasaccharide-synthesizing enzyme Z) is a bacterial 6-alpha-glucosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsY. CtsZ and CtsY both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=95.38 E-value=0.036 Score=60.41 Aligned_cols=138 Identities=11% Similarity=0.183 Sum_probs=80.7
Q ss_pred CHHHHHhhhHHHHHcCC--CeEEECcccccCccCcccCCCCCCCcccCCCCCCCCCCCcHHHHHHHHHHHHHcCCEEEEE
Q 003901 262 TYLGVVEKLDHLKDLGI--NCLELMPCHEFNELEYFSYNSVLGDYNYSSAGIRNCGHDAINEFKLLVREAHKRGIEVVMD 339 (788)
Q Consensus 262 ~~~gl~~~L~yLk~LGv--t~I~L~Pi~~~~~~~~~~~~~~~~~wgY~~~~~~~~~~G~~~elk~lV~~aH~~Gi~VilD 339 (788)
+-..+.+.++.+++.|| ++|+|=.=+-..... ...+..|.++.. +|- +.++||+++|++|++|++-
T Consensus 22 ~~~~v~~~~~~~~~~~iP~d~i~lD~~w~~~~~~----~~~~~~f~wd~~-----~FP---dp~~mi~~L~~~G~k~~~~ 89 (317)
T cd06598 22 NWQEVDDTIKTLREKDFPLDAAILDLYWFGKDID----KGHMGNLDWDRK-----AFP---DPAGMIADLAKKGVKTIVI 89 (317)
T ss_pred CHHHHHHHHHHHHHhCCCceEEEEechhhcCccc----CCceeeeEeccc-----cCC---CHHHHHHHHHHcCCcEEEE
Confidence 35667777888887765 566654321100000 001111333333 333 3578999999999999998
Q ss_pred eeeccccCCCCCCCccccCCCCCccceeeCCCCCcc---cCCCCccccCCCCHHHHHHHHHHHHHHHHhcCccEEEEecc
Q 003901 340 VVFNHTVEGNDKGPILSFRGVDNSVYYMLAPKGEFY---NYSGCGNTFNCNHPVVRQFIVDCLRYWVTEMHVDGFRFDLA 416 (788)
Q Consensus 340 vV~NH~~~~~~~~~~~~~~~~~~~~yy~~~~~g~~~---~~~g~~~dln~~~p~vr~~i~d~l~~W~~e~gVDGFR~D~a 416 (788)
+.+ ++..+++. + -.+.....++....+|..+ .+.|.+--+|+.||++++...+.++..+ ++|||||=+|..
T Consensus 90 v~P-~v~~~~~~---y-~e~~~~g~l~~~~~~~~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~-~~Gvdg~w~D~~ 163 (317)
T cd06598 90 TEP-FVLKNSKN---W-GEAVKAGALLKKDQGGVPTLFDFWFGNTGLIDWFDPAAQAWFHDNYKKLI-DQGVTGWWGDLG 163 (317)
T ss_pred EcC-cccCCchh---H-HHHHhCCCEEEECCCCCEeeeeccCCCccccCCCCHHHHHHHHHHHHHhh-hCCccEEEecCC
Confidence 753 23222221 1 0111222224444444322 2334445689999999999999998875 899999999976
Q ss_pred c
Q 003901 417 S 417 (788)
Q Consensus 417 ~ 417 (788)
.
T Consensus 164 E 164 (317)
T cd06598 164 E 164 (317)
T ss_pred C
Confidence 4
No 89
>cd06603 GH31_GANC_GANAB_alpha This family includes the closely related glycosyl hydrolase family 31 (GH31) isozymes, neutral alpha-glucosidase C (GANC) and the alpha subunit of heterodimeric neutral alpha-glucosidase AB (GANAB). Initially distinguished on the basis of differences in electrophoretic mobility in starch gel, GANC and GANAB have been shown to have other differences, including those of substrate specificity. GANC and GANAB are key enzymes in glycogen metabolism that hydrolyze terminal, non-reducing 1,4-linked alpha-D-glucose residues from glycogen in the endoplasmic reticulum. The GANC/GANAB family includes the alpha-glucosidase II (ModA) from Dictyostelium discoideum as well as the alpha-glucosidase II (GLS2, or ROT2 - Reversal of TOR2 lethality protein 2) from Saccharomyces cerevisiae.
Probab=94.04 E-value=0.11 Score=57.20 Aligned_cols=134 Identities=12% Similarity=0.072 Sum_probs=81.8
Q ss_pred CHHHHHhhhHHHHHcCC--CeEEECcccccCccCcccCCCCCCCcccCCCCCCCCCCCcHHHHHHHHHHHHHcCCEEEEE
Q 003901 262 TYLGVVEKLDHLKDLGI--NCLELMPCHEFNELEYFSYNSVLGDYNYSSAGIRNCGHDAINEFKLLVREAHKRGIEVVMD 339 (788)
Q Consensus 262 ~~~gl~~~L~yLk~LGv--t~I~L~Pi~~~~~~~~~~~~~~~~~wgY~~~~~~~~~~G~~~elk~lV~~aH~~Gi~VilD 339 (788)
+-..+.+.++.+++.|| ++|+|=.=+.. .+..|.++.. +|- +.++||+++|++|++|++-
T Consensus 22 ~~~ev~~~~~~~~~~~iP~d~i~lD~~~~~----------~~~~f~~d~~-----~FP---dp~~mi~~L~~~G~k~~~~ 83 (339)
T cd06603 22 DQEDVKEVDAGFDEHDIPYDVIWLDIEHTD----------GKRYFTWDKK-----KFP---DPEKMQEKLASKGRKLVTI 83 (339)
T ss_pred CHHHHHHHHHHHHHcCCCceEEEEChHHhC----------CCCceEeCcc-----cCC---CHHHHHHHHHHCCCEEEEE
Confidence 45667777777777665 56665421110 1112333332 232 4689999999999999998
Q ss_pred eeeccccCCCCCCCccccCCCCCccceeeCCCCCcc---cCCCCccccCCCCHHHHHHHHHHHHHHHH--hcCccEEEEe
Q 003901 340 VVFNHTVEGNDKGPILSFRGVDNSVYYMLAPKGEFY---NYSGCGNTFNCNHPVVRQFIVDCLRYWVT--EMHVDGFRFD 414 (788)
Q Consensus 340 vV~NH~~~~~~~~~~~~~~~~~~~~yy~~~~~g~~~---~~~g~~~dln~~~p~vr~~i~d~l~~W~~--e~gVDGFR~D 414 (788)
+.+--..... .+ .++......|+..+++|.-+ .|.|...-+|+.||++++...+.++..+. ..|+|||=+|
T Consensus 84 ~~P~v~~~~~--~~--~y~e~~~~g~~vk~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~~~~~~g~~g~w~D 159 (339)
T cd06603 84 VDPHIKRDDG--YY--VYKEAKDKGYLVKNSDGGDFEGWCWPGSSSWPDFLNPEVRDWWASLFSYDKYKGSTENLYIWND 159 (339)
T ss_pred ecCceecCCC--CH--HHHHHHHCCeEEECCCCCEEEEEECCCCcCCccCCChhHHHHHHHHHHHHhhcccCCCceEEec
Confidence 7643321110 01 11111223455555555332 24454557899999999999999998875 3699999999
Q ss_pred ccc
Q 003901 415 LAS 417 (788)
Q Consensus 415 ~a~ 417 (788)
+..
T Consensus 160 ~~E 162 (339)
T cd06603 160 MNE 162 (339)
T ss_pred cCC
Confidence 653
No 90
>COG3280 TreY Maltooligosyl trehalose synthase [Carbohydrate transport and metabolism]
Probab=93.96 E-value=0.027 Score=65.22 Aligned_cols=96 Identities=13% Similarity=0.073 Sum_probs=61.3
Q ss_pred HHHhcCCceEEecccccccCCCCCCCCcCCCCCccccccCccc--------Cc-------c-hHHHHHHHHHHHHHhhCc
Q 003901 602 CLMVSQGVPMISMGDEYGHTKGGNNNTYCHDNDINYFRWDKKE--------ES-------K-SDFFRFCCLLTKFRHECE 665 (788)
Q Consensus 602 lllt~pGiP~Iy~GdE~G~~~~g~~n~y~~~~~~~~~~W~~~~--------~~-------~-~~l~~~~r~Li~lRk~~~ 665 (788)
+-||.||||=||+|.|.-.. +--.+|++.+.|..... .. . .--...+.+++++|++++
T Consensus 714 lkltaPGVPD~YQGtE~wd~------SLVDPDNRRpVDf~~~~~~L~~lq~~~~~l~~~~~Dg~K~~v~~~aL~lR~~~~ 787 (889)
T COG3280 714 LKLTAPGVPDIYQGTELWDF------SLVDPDNRRPVDFATRAQALKALQEGDFELLEHWLDGIKQAVTAAALRLRREHP 787 (889)
T ss_pred HHHcCCCCCccccchhhhhc------cccCCCCCCCCcHHHHHHHHhcCCCCchhHHHHhhhhHHHHHHHHHHHHHHhch
Confidence 34899999999999996432 33445556666554311 00 0 001235678999999998
Q ss_pred c-CCCCCCCCccceeeccCCCCCCCCCCCCcEEEEEEEcCCCCEEEEEEeC
Q 003901 666 S-LGLSDFPTADRLQWHGHAPGLPDWSDKSRFVAFTLIDSVKGEIYVAFNA 715 (788)
Q Consensus 666 a-L~~g~~~~~~~~~~~~~~~~~~~~~~~~~vlaf~r~~~~~~~i~Vv~N~ 715 (788)
. |+.|+|..+. -+| ...+++++|.|...+ +.+++|.+.
T Consensus 788 elF~~GdY~Pl~---~~G--------~~a~hviAFaR~~~~-~~~i~v~Pr 826 (889)
T COG3280 788 ELFAGGDYLPLF---AAG--------PAADHVIAFARGKDD-QFAITVAPR 826 (889)
T ss_pred HhhcCCCeeeec---ccC--------chhHHHHHHhhccCC-ceeEEeehH
Confidence 8 7888887731 011 124789999998765 566666653
No 91
>cd06595 GH31_xylosidase_XylS-like This family represents an uncharacterized glycosyl hydrolase family 31 (GH31) enzyme found in bacteria and eukaryotes that is related to the XylS xylosidase of Sulfolobus solfataricus. Alpha-xylosidases catalyze the release of an alpha-xylose residue from the non-reducing end of alpha-xyloside substrates. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=93.48 E-value=0.14 Score=55.06 Aligned_cols=84 Identities=14% Similarity=0.177 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHcCCEEEEEeeeccccCCCCCCCccccCCCCCccceeeCCCCCcccCCCCccccCCCCHHHHHHHHHHHH
Q 003901 321 EFKLLVREAHKRGIEVVMDVVFNHTVEGNDKGPILSFRGVDNSVYYMLAPKGEFYNYSGCGNTFNCNHPVVRQFIVDCLR 400 (788)
Q Consensus 321 elk~lV~~aH~~Gi~VilDvV~NH~~~~~~~~~~~~~~~~~~~~yy~~~~~g~~~~~~g~~~dln~~~p~vr~~i~d~l~ 400 (788)
+.++||+++|++|++||+-+.+........ . .++. +...... ....+...-+|+.+|+.++...+.+.
T Consensus 75 dp~~mi~~Lh~~G~k~v~~v~P~~~~~~~~--~--~y~~------~~~~~~~--~~~~~~~~~~D~tnp~a~~~w~~~~~ 142 (292)
T cd06595 75 DPEKLLQDLHDRGLKVTLNLHPADGIRAHE--D--QYPE------MAKALGV--DPATEGPILFDLTNPKFMDAYFDNVH 142 (292)
T ss_pred CHHHHHHHHHHCCCEEEEEeCCCcccCCCc--H--HHHH------HHHhcCC--CcccCCeEEecCCCHHHHHHHHHHHH
Confidence 468999999999999999887643211110 0 0000 0000000 00111112578999999998777776
Q ss_pred HHHHhcCccEEEEecc
Q 003901 401 YWVTEMHVDGFRFDLA 416 (788)
Q Consensus 401 ~W~~e~gVDGFR~D~a 416 (788)
.-+.++|||||=.|.-
T Consensus 143 ~~~~~~Gidg~W~D~~ 158 (292)
T cd06595 143 RPLEKQGVDFWWLDWQ 158 (292)
T ss_pred HHHHhcCCcEEEecCC
Confidence 6666899999999954
No 92
>COG1501 Alpha-glucosidases, family 31 of glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=93.24 E-value=0.16 Score=61.36 Aligned_cols=92 Identities=20% Similarity=0.323 Sum_probs=63.9
Q ss_pred HHHHHHHHHHcCCEEEEEeeeccccCCCCCCCccccCCCCCccceeeCCCCCcccC---CCCccccCCCCHHHHHHHHH-
Q 003901 322 FKLLVREAHKRGIEVVMDVVFNHTVEGNDKGPILSFRGVDNSVYYMLAPKGEFYNY---SGCGNTFNCNHPVVRQFIVD- 397 (788)
Q Consensus 322 lk~lV~~aH~~Gi~VilDvV~NH~~~~~~~~~~~~~~~~~~~~yy~~~~~g~~~~~---~g~~~dln~~~p~vr~~i~d- 397 (788)
.|+||+.+|++||++|.=+.+.=..+ ++.+ +-.....|+..+++|..+.+ .+.+.-+|+.||++|+...+
T Consensus 323 pk~mi~~l~~~Gikl~~~i~P~i~~d-~~~~-----~e~~~~Gy~~k~~~g~~~~~~~w~~~~a~~DFtnp~~r~Ww~~~ 396 (772)
T COG1501 323 PKQMIAELHEKGIKLIVIINPYIKQD-SPLF-----KEAIEKGYFVKDPDGEIYQADFWPGNSAFPDFTNPDAREWWASD 396 (772)
T ss_pred HHHHHHHHHhcCceEEEEeccccccC-CchH-----HHHHHCCeEEECCCCCEeeecccCCcccccCCCCHHHHHHHHHH
Confidence 45999999999999998776543332 2211 11122446666777776643 33445689999999999995
Q ss_pred HHHHHHHhcCccEEEEecccccc
Q 003901 398 CLRYWVTEMHVDGFRFDLASIMT 420 (788)
Q Consensus 398 ~l~~W~~e~gVDGFR~D~a~~l~ 420 (788)
....++ ++|||||=.|......
T Consensus 397 ~~~~l~-d~Gv~g~W~D~nEp~~ 418 (772)
T COG1501 397 KKKNLL-DLGVDGFWNDMNEPEP 418 (772)
T ss_pred HHhHHH-hcCccEEEccCCCCcc
Confidence 445566 9999999999876543
No 93
>PLN02763 hydrolase, hydrolyzing O-glycosyl compounds
Probab=92.45 E-value=0.32 Score=59.80 Aligned_cols=133 Identities=11% Similarity=0.117 Sum_probs=78.6
Q ss_pred CHHHHHhhhHHHHHcCC--CeEEECcccccCccCcccCCCCCCCcccCCCCCCCCCCCcHHHHHHHHHHHHHcCCEEEEE
Q 003901 262 TYLGVVEKLDHLKDLGI--NCLELMPCHEFNELEYFSYNSVLGDYNYSSAGIRNCGHDAINEFKLLVREAHKRGIEVVMD 339 (788)
Q Consensus 262 ~~~gl~~~L~yLk~LGv--t~I~L~Pi~~~~~~~~~~~~~~~~~wgY~~~~~~~~~~G~~~elk~lV~~aH~~Gi~VilD 339 (788)
+-+.+.+-++.+++.|| ++|||--=+ ...+..|.++.. +|- +.++||+++|++|+++|+=
T Consensus 199 sq~eV~eva~~fre~~IP~DvIwlDidY----------m~g~~~FTwD~~-----rFP---dP~~mv~~Lh~~G~kvv~i 260 (978)
T PLN02763 199 SAKRVAEIARTFREKKIPCDVVWMDIDY----------MDGFRCFTFDKE-----RFP---DPKGLADDLHSIGFKAIWM 260 (978)
T ss_pred CHHHHHHHHHHHHHcCCCceEEEEehhh----------hcCCCceeECcc-----cCC---CHHHHHHHHHHCCCEEEEE
Confidence 34566777777777665 556653111 001111233332 332 4689999999999999765
Q ss_pred eeeccccCCCCCCCccccCCCCCccceeeCCCCCcc---cCCCCccccCCCCHHHHHHHHHHHHHHHHhcCccEEEEecc
Q 003901 340 VVFNHTVEGNDKGPILSFRGVDNSVYYMLAPKGEFY---NYSGCGNTFNCNHPVVRQFIVDCLRYWVTEMHVDGFRFDLA 416 (788)
Q Consensus 340 vV~NH~~~~~~~~~~~~~~~~~~~~yy~~~~~g~~~---~~~g~~~dln~~~p~vr~~i~d~l~~W~~e~gVDGFR~D~a 416 (788)
+.+ +...+. .+..++..-...+|..+.+|..+ .|.|...-.|+.||++|++..+.++.++ +.|||||=+|+-
T Consensus 261 idP-gI~~d~---gY~~y~eg~~~~~fvk~~~G~~y~G~vWpG~~~fpDFTnP~ar~WW~~~~k~l~-d~GVDG~W~Dmn 335 (978)
T PLN02763 261 LDP-GIKAEE---GYFVYDSGCENDVWIQTADGKPFVGEVWPGPCVFPDFTNKKTRSWWANLVKDFV-SNGVDGIWNDMN 335 (978)
T ss_pred EcC-CCccCC---CCHHHHhHhhcCeeEECCCCCeeEeeecCCCccccCCCCHHHHHHHHHHHHHHh-cCCCcEEEccCC
Confidence 433 222111 01111111123455555566533 2333333468999999999999999888 799999999975
Q ss_pred c
Q 003901 417 S 417 (788)
Q Consensus 417 ~ 417 (788)
.
T Consensus 336 E 336 (978)
T PLN02763 336 E 336 (978)
T ss_pred C
Confidence 4
No 94
>PF05913 DUF871: Bacterial protein of unknown function (DUF871); InterPro: IPR008589 This family consists of several conserved hypothetical proteins from bacteria and archaea. The function of this family is unknown though a number are annotated as outer surface proteins.; PDB: 2P0O_A 1X7F_A.
Probab=92.06 E-value=0.24 Score=54.52 Aligned_cols=61 Identities=18% Similarity=0.229 Sum_probs=41.0
Q ss_pred CHHHHHhhhHHHHHcCCCeEEECcccccCccCcccCCCCCCCcccCCCCCCCCCCCcHHHHHHHHHHHHHcCCEEEEEee
Q 003901 262 TYLGVVEKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYNYSSAGIRNCGHDAINEFKLLVREAHKRGIEVVMDVV 341 (788)
Q Consensus 262 ~~~gl~~~L~yLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~wgY~~~~~~~~~~G~~~elk~lV~~aH~~Gi~VilDvV 341 (788)
++....+-|...+++|++.|+.+= +- +. +..-...++|++|++.||+.||+||+||-
T Consensus 12 ~~~~~~~yi~~a~~~Gf~~iFTSL-~i-pe---------------------~~~~~~~~~~~~l~~~a~~~~~~v~~Dis 68 (357)
T PF05913_consen 12 SFEENKAYIEKAAKYGFKRIFTSL-HI-PE---------------------DDPEDYLERLKELLKLAKELGMEVIADIS 68 (357)
T ss_dssp -HHHHHHHHHHHHCTTEEEEEEEE--------------------------------HHHHHHHHHHHHHHCT-EEEEEE-
T ss_pred CHHHHHHHHHHHHHCCCCEEECCC-Cc-CC---------------------CCHHHHHHHHHHHHHHHHHCCCEEEEECC
Confidence 567777778888899999998642 11 00 00122478999999999999999999997
Q ss_pred eccc
Q 003901 342 FNHT 345 (788)
Q Consensus 342 ~NH~ 345 (788)
+.-.
T Consensus 69 p~~l 72 (357)
T PF05913_consen 69 PKVL 72 (357)
T ss_dssp CCHH
T ss_pred HHHH
Confidence 5443
No 95
>cd06562 GH20_HexA_HexB-like Beta-N-acetylhexosaminidases catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. The hexA and hexB genes encode the alpha- and beta-subunits of the two major beta-N-acetylhexosaminidase isoenzymes, N-acetyl-beta-D-hexosaminidase A (HexA) and beta-N-acetylhexosaminidase B (HexB). Both the alpha and the beta catalytic subunits have a TIM-barrel fold and belong to the glycosyl hydrolase family 20 (GH20). The HexA enzyme is a heterodimer containing one alpha and one beta subunit while the HexB enzyme is a homodimer containing two beta-subunits. Hexosaminidase mutations cause an inability to properly hydrolyze certain sphingolipids which accumulate in lysosomes within the brain, resulting in the lipid storage disorders Tay-Sachs and Sandhoff. Mutations in the alpha subunit cause in a deficiency in the HexA enzyme and result in
Probab=91.80 E-value=1.2 Score=49.06 Aligned_cols=123 Identities=15% Similarity=0.122 Sum_probs=74.2
Q ss_pred HHHHHhhhHHHHHcCCCeEEECcccccCccCcccCCCCCCCcccCCCCC---------CCCCCCcHHHHHHHHHHHHHcC
Q 003901 263 YLGVVEKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYNYSSAGI---------RNCGHDAINEFKLLVREAHKRG 333 (788)
Q Consensus 263 ~~gl~~~L~yLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~wgY~~~~~---------~~~~~G~~~elk~lV~~aH~~G 333 (788)
...|.+.|+.++.+.+|.++|= +.+.. .|++....+ ....+=|.+|+|++|+-|.++|
T Consensus 17 ~~~ik~~Id~ma~~KlN~lh~H-ltDd~------------~~rle~~~~P~Lt~~ga~~~~~~YT~~di~eiv~yA~~rg 83 (348)
T cd06562 17 VDSIKRTIDAMAYNKLNVLHWH-ITDSQ------------SFPLESPSYPELSKKGAYSPSEVYTPEDVKEIVEYARLRG 83 (348)
T ss_pred HHHHHHHHHHHHHhCCcEEEEe-EEcCC------------CceEeeCCCchhhhccCcCCCceECHHHHHHHHHHHHHcC
Confidence 5667777899999999999862 11100 022222111 0011228999999999999999
Q ss_pred CEEEEEe-eeccccCCCCCCCccccCCCCCccceeeCCCCCcccCCCCccccCCCCHHHHHHHHHHHHHHHHhcC
Q 003901 334 IEVVMDV-VFNHTVEGNDKGPILSFRGVDNSVYYMLAPKGEFYNYSGCGNTFNCNHPVVRQFIVDCLRYWVTEMH 407 (788)
Q Consensus 334 i~VilDv-V~NH~~~~~~~~~~~~~~~~~~~~yy~~~~~g~~~~~~g~~~dln~~~p~vr~~i~d~l~~W~~e~g 407 (788)
|.||-.+ ++.|+..-....|.+...+ .... . .+ ........||..+|++.+++.+++...++-|.
T Consensus 84 I~vIPEID~PGH~~a~~~~~p~l~~~~---~~~~--~---~~-~~~~~~~~L~~~~~~t~~fl~~vl~E~~~lF~ 149 (348)
T cd06562 84 IRVIPEIDTPGHTGSWGQGYPELLTGC---YAVW--R---KY-CPEPPCGQLNPTNPKTYDFLKTLFKEVSELFP 149 (348)
T ss_pred CEEEEeccCchhhHHHHHhChhhhCCC---Cccc--c---cc-ccCCCCccccCCChhHHHHHHHHHHHHHHhcC
Confidence 9999999 4799854221112111111 0000 0 00 01112346899999999999999999996454
No 96
>cd06542 GH18_EndoS-like Endo-beta-N-acetylglucosaminidases are bacterial chitinases that hydrolyze the chitin core of various asparagine (N)-linked glycans and glycoproteins. The endo-beta-N-acetylglucosaminidases have a glycosyl hydrolase family 18 (GH18) catalytic domain. Some members also have an additional C-terminal glycosyl hydrolase family 20 (GH20) domain while others have an N-terminal domain of unknown function (pfam08522). Members of this family include endo-beta-N-acetylglucosaminidase S (EndoS) from Streptococcus pyogenes, EndoF1, EndoF2, EndoF3, and EndoH from Flavobacterium meningosepticum, and EndoE from Enterococcus faecalis. EndoS is a secreted endoglycosidase from Streptococcus pyogenes that specifically hydrolyzes the glycan on human IgG between two core N-acetylglucosamine residues. EndoE is a secreted endoglycosidase, encoded by the ndoE gene in Enterococcus faecalis, that hydrolyzes the glycan on human RNase B.
Probab=91.77 E-value=0.54 Score=49.44 Aligned_cols=65 Identities=18% Similarity=0.240 Sum_probs=49.2
Q ss_pred cHHHHHHHHHHHHHcCCEEEEEeeeccccCCCCCCCccccCCCCCccceeeCCCCCcccCCCCccccCCCCHHHHHHHHH
Q 003901 318 AINEFKLLVREAHKRGIEVVMDVVFNHTVEGNDKGPILSFRGVDNSVYYMLAPKGEFYNYSGCGNTFNCNHPVVRQFIVD 397 (788)
Q Consensus 318 ~~~elk~lV~~aH~~Gi~VilDvV~NH~~~~~~~~~~~~~~~~~~~~yy~~~~~g~~~~~~g~~~dln~~~p~vr~~i~d 397 (788)
+.+++++.|+.+|++|+||++=+-.+|.+..- ....+++-++.+++
T Consensus 49 ~~~~~~~~i~~l~~kG~KVl~sigg~~~~~~~----------------------------------~~~~~~~~~~~fa~ 94 (255)
T cd06542 49 LLTNKETYIRPLQAKGTKVLLSILGNHLGAGF----------------------------------ANNLSDAAAKAYAK 94 (255)
T ss_pred hhHHHHHHHHHHhhCCCEEEEEECCCCCCCCc----------------------------------cccCCHHHHHHHHH
Confidence 46889999999999999999988766643210 01123456777788
Q ss_pred HHHHHHHhcCccEEEEecc
Q 003901 398 CLRYWVTEMHVDGFRFDLA 416 (788)
Q Consensus 398 ~l~~W~~e~gVDGFR~D~a 416 (788)
.+..+++.||+||+=+|--
T Consensus 95 ~l~~~v~~yglDGiDiD~E 113 (255)
T cd06542 95 AIVDTVDKYGLDGVDFDDE 113 (255)
T ss_pred HHHHHHHHhCCCceEEeee
Confidence 8888888999999999853
No 97
>TIGR00217 malQ 4-alpha-glucanotransferase. This enzyme is known as amylomaltase and disproportionating enzyme.
Probab=91.62 E-value=0.75 Score=53.30 Aligned_cols=26 Identities=27% Similarity=0.308 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHcCCEEEEEeeeccc
Q 003901 320 NEFKLLVREAHKRGIEVVMDVVFNHT 345 (788)
Q Consensus 320 ~elk~lV~~aH~~Gi~VilDvV~NH~ 345 (788)
++++++-+.|+.+||++|-|+-+-=.
T Consensus 212 ~Q~~~l~~yA~~~~I~L~gDlpi~v~ 237 (513)
T TIGR00217 212 SQFQALKRYANDMGIGLYGDLPVFVA 237 (513)
T ss_pred HHHHHHHHHHhcCCcEEEEeCcceeC
Confidence 46777888899999999999976433
No 98
>PRK14510 putative bifunctional 4-alpha-glucanotransferase/glycogen debranching enzyme; Provisional
Probab=91.24 E-value=5.3 Score=51.39 Aligned_cols=33 Identities=18% Similarity=0.230 Sum_probs=29.8
Q ss_pred CCCCcCHHHHHhhhHHHHHcCCCeEEECccccc
Q 003901 257 TEHPGTYLGVVEKLDHLKDLGINCLELMPCHEF 289 (788)
Q Consensus 257 ~~~~G~~~gl~~~L~yLk~LGvt~I~L~Pi~~~ 289 (788)
....|||.++.+-++.+++.|.+.|+|+|++..
T Consensus 739 ~~GiGDf~dl~~~vd~~a~~G~~~~qilPl~~~ 771 (1221)
T PRK14510 739 PWGIGDFEELYALVDFLAEGGQSLWGVNPLHPL 771 (1221)
T ss_pred CCCccCHHHHHHHHHHHHHcCCCEEEECCCCCC
Confidence 346799999999999999999999999999874
No 99
>PRK11052 malQ 4-alpha-glucanotransferase; Provisional
Probab=91.11 E-value=0.99 Score=54.15 Aligned_cols=31 Identities=19% Similarity=0.282 Sum_probs=26.0
Q ss_pred CCCcCHHHHHhhhHHHHHcCCCeEEECcccc
Q 003901 258 EHPGTYLGVVEKLDHLKDLGINCLELMPCHE 288 (788)
Q Consensus 258 ~~~G~~~gl~~~L~yLk~LGvt~I~L~Pi~~ 288 (788)
...|||..+.+-++.+++.|.+.++|+|++.
T Consensus 159 ~GIGDfgdl~~l~d~~a~~G~~~~qlnPlha 189 (695)
T PRK11052 159 WGIGDFGDLKQMLEDVAKRGGDFIGLNPIHA 189 (695)
T ss_pred CCeecHHHHHHHHHHHHHcCCCEEEECCCCc
Confidence 4578998888888999999999999999884
No 100
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=90.83 E-value=0.37 Score=51.02 Aligned_cols=64 Identities=23% Similarity=0.293 Sum_probs=42.2
Q ss_pred HHHhhhHHHHHcCCCeEEECcccccCccCcccCCCCCCCcccCCCCCCCCCCCcHHHHHHHHHHHHHcCCEEEEEeeec
Q 003901 265 GVVEKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYNYSSAGIRNCGHDAINEFKLLVREAHKRGIEVVMDVVFN 343 (788)
Q Consensus 265 gl~~~L~yLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~wgY~~~~~~~~~~G~~~elk~lV~~aH~~Gi~VilDvV~N 343 (788)
-..+.++.||++|+|+|=|.-.++.-... . . ++. . .-...+.|+++|++|+++||+||+|+--.
T Consensus 22 ~~~~~~~~~~~~G~n~VRi~v~~~~~~~~----~--~---~~~----~--~~~~~~~ld~~v~~a~~~gi~vild~h~~ 85 (281)
T PF00150_consen 22 ITEADFDQLKALGFNTVRIPVGWEAYQEP----N--P---GYN----Y--DETYLARLDRIVDAAQAYGIYVILDLHNA 85 (281)
T ss_dssp SHHHHHHHHHHTTESEEEEEEESTSTSTT----S--T---TTS----B--THHHHHHHHHHHHHHHHTT-EEEEEEEES
T ss_pred CHHHHHHHHHHCCCCEEEeCCCHHHhcCC----C--C---Ccc----c--cHHHHHHHHHHHHHHHhCCCeEEEEeccC
Confidence 45566899999999999986553211000 0 0 010 0 11247889999999999999999988644
No 101
>cd06568 GH20_SpHex_like A subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the N-acetylhexosaminidase from Streptomyces plicatus (SpHex). SpHex catalyzes the hydrolysis of N-acetyl-beta-hexosaminides. An Asp residue within the active site plays a critical role in substrate-assisted catalysis by orienting the 2-acetamido group and stabilizing the transition state. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself. Proteins belonging to this subgroup lack the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases.
Probab=90.63 E-value=1.9 Score=47.15 Aligned_cols=130 Identities=20% Similarity=0.225 Sum_probs=73.5
Q ss_pred CHHHHHhhhHHHHHcCCCeEEECcccc------cCccCcccCCCCCCCcccCCCCCCCCCCCcHHHHHHHHHHHHHcCCE
Q 003901 262 TYLGVVEKLDHLKDLGINCLELMPCHE------FNELEYFSYNSVLGDYNYSSAGIRNCGHDAINEFKLLVREAHKRGIE 335 (788)
Q Consensus 262 ~~~gl~~~L~yLk~LGvt~I~L~Pi~~------~~~~~~~~~~~~~~~wgY~~~~~~~~~~G~~~elk~lV~~aH~~Gi~ 335 (788)
+...|.+.||.++..++|.++|--.=+ ........ ..+ +|...+.....+=|.+|+|+||+-|.++||.
T Consensus 16 ~~~~lk~~id~ma~~KlN~lhlHLtD~~~~rle~~~~P~lt---~~g--a~~~~~~~~~~~YT~~di~elv~yA~~rgI~ 90 (329)
T cd06568 16 TVAEVKRYIDLLALYKLNVLHLHLTDDQGWRIEIKSWPKLT---EIG--GSTEVGGGPGGYYTQEDYKDIVAYAAERHIT 90 (329)
T ss_pred CHHHHHHHHHHHHHhCCcEEEEEeecCCcceeeecCccccc---ccc--cccccCCCCCCcCCHHHHHHHHHHHHHcCCE
Confidence 466777788999999999998743211 00000000 000 0100000011223899999999999999999
Q ss_pred EEEEee-eccccCCCCCCCccccCCCCCccceeeCCCCCcccCCCCccccCCCCHHHHHHHHHHHHHHHHh
Q 003901 336 VVMDVV-FNHTVEGNDKGPILSFRGVDNSVYYMLAPKGEFYNYSGCGNTFNCNHPVVRQFIVDCLRYWVTE 405 (788)
Q Consensus 336 VilDvV-~NH~~~~~~~~~~~~~~~~~~~~yy~~~~~g~~~~~~g~~~dln~~~p~vr~~i~d~l~~W~~e 405 (788)
||-.+- +.|+..--...|.+.-.+.... . +.........||..+|++.+++.+.+...++-
T Consensus 91 vIPEiD~PGH~~a~~~~~p~l~~~~~~~~-~--------~~~~~~~~~~l~~~~~~t~~fl~~v~~E~~~~ 152 (329)
T cd06568 91 VVPEIDMPGHTNAALAAYPELNCDGKAKP-L--------YTGIEVGFSSLDVDKPTTYEFVDDVFRELAAL 152 (329)
T ss_pred EEEecCCcHHHHHHHHhChhhccCCCCCc-c--------ccccCCCCcccCCCCHHHHHHHHHHHHHHHHh
Confidence 999995 7888542111111111110000 0 00111112468999999999999999988853
No 102
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=90.48 E-value=0.83 Score=49.75 Aligned_cols=58 Identities=22% Similarity=0.409 Sum_probs=38.8
Q ss_pred HhhhHHHHHcCCCeEEECcccccCccCcccCCCCCCCcccCCCCCCCCCCCcHHHHHHHHHHHHHcCCEEEEEeeecccc
Q 003901 267 VEKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYNYSSAGIRNCGHDAINEFKLLVREAHKRGIEVVMDVVFNHTV 346 (788)
Q Consensus 267 ~~~L~yLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~wgY~~~~~~~~~~G~~~elk~lV~~aH~~Gi~VilDvV~NH~~ 346 (788)
.+.++.||+.|+|+|-|=--.+ + ++ ..+.+.+...+|.++++++||+|+||+=|..+-
T Consensus 27 ~d~~~ilk~~G~N~vRlRvwv~-P---------------~~------~g~~~~~~~~~~akrak~~Gm~vlldfHYSD~W 84 (332)
T PF07745_consen 27 KDLFQILKDHGVNAVRLRVWVN-P---------------YD------GGYNDLEDVIALAKRAKAAGMKVLLDFHYSDFW 84 (332)
T ss_dssp --HHHHHHHTT--EEEEEE-SS-----------------TT------TTTTSHHHHHHHHHHHHHTT-EEEEEE-SSSS-
T ss_pred CCHHHHHHhcCCCeEEEEeccC-C---------------cc------cccCCHHHHHHHHHHHHHCCCeEEEeecccCCC
Confidence 3457999999999998744222 1 00 134578999999999999999999999877763
No 103
>COG1640 MalQ 4-alpha-glucanotransferase [Carbohydrate transport and metabolism]
Probab=90.37 E-value=11 Score=43.41 Aligned_cols=26 Identities=23% Similarity=0.327 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHcCCEEEEEeeeccc
Q 003901 320 NEFKLLVREAHKRGIEVVMDVVFNHT 345 (788)
Q Consensus 320 ~elk~lV~~aH~~Gi~VilDvV~NH~ 345 (788)
.++.++=.-|+++||.+|.|+-+.=.
T Consensus 210 ~Q~~~~k~~A~~~~I~i~gDLpv~va 235 (520)
T COG1640 210 RQLAALKRYANDMGIGIIGDLPVGVA 235 (520)
T ss_pred HHHHHHHHHHHhcCceEeecccceec
Confidence 34555556677899999999976544
No 104
>cd02857 CD_pullulan_degrading_enzymes_N_term CD and pullulan-degrading enzymes N-terminus domain. Members of this subgroup include: Cyclomaltodextrinase (CDase), maltogenic amylase, and neopullulanase all of which are capable of hydrolyzing all or two of the following three types of substrates: cyclomaltodextrins (CDs), pullulan, and starch. These enzymes hydrolyze CDs and starch to maltose and pullulan to panose by cleavage of alpha-1,4 glycosidic bonds whereas alpha-amylases essentially lack activity on CDs and pullulan. They also catalyze transglycosylation of oligosaccharides to the C3-, C4- or C6-hydroxyl groups of various acceptor sugar molecules. The N-terminus of the CD and pullulan-degrading enzymes may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of
Probab=90.00 E-value=1.1 Score=40.66 Aligned_cols=66 Identities=17% Similarity=0.246 Sum_probs=41.8
Q ss_pred CCCcEEeCCcEEEEEEcCC--CCEEEEEEEeCCCccCCceeeEEecccccCC-CCCEEEEEEcCCCCCceeeEEEc
Q 003901 97 PFGATLRDGGVNFSIFSSN--AVSATLCLITLSDLQENKVTEEIALDSFANK-TGDVWHVFLKGDFKDMLYGYKFD 169 (788)
Q Consensus 97 ~lGa~~~~~~~~F~vwap~--A~~V~L~l~~~~d~~~~~~~~~~~l~~~~~~-~~gvW~~~i~~~~~~~~Y~y~~~ 169 (788)
|+|| +.++|+|+++. +++|.|++....+.+ . ...++|.+.... ....|++.|+-...-..|.|++.
T Consensus 12 p~ga----~~v~irlr~~~~~v~~v~l~~~~~~~~~--~-~~~~~M~~~~~~~~~~~~~~~i~~~~~~~~Y~F~l~ 80 (116)
T cd02857 12 PYGA----DTLHIRLRTKKGDVAKVYLRYGDPYDKG--E-EEEVPMRKDGSDELFDYWEATLPPPTGRLRYYFELV 80 (116)
T ss_pred EcCC----CEEEEEEEecCCCccEEEEEEECCCCCC--C-ceEEEEEEeeeCCceeEEEEEEecCCcEEEEEEEEE
Confidence 7888 88999999874 688888876543211 1 236677653222 23679999975443345666663
No 105
>KOG1065 consensus Maltase glucoamylase and related hydrolases, glycosyl hydrolase family 31 [Carbohydrate transport and metabolism]
Probab=89.90 E-value=2.2 Score=51.01 Aligned_cols=136 Identities=16% Similarity=0.219 Sum_probs=78.0
Q ss_pred CcCHHHHHhhhHHHHHcCCC--eEEECcccccCccCcccCCCCCCCcccCCCCCCCCCCCcHHHHHHHHHHHHHcCCEEE
Q 003901 260 PGTYLGVVEKLDHLKDLGIN--CLELMPCHEFNELEYFSYNSVLGDYNYSSAGIRNCGHDAINEFKLLVREAHKRGIEVV 337 (788)
Q Consensus 260 ~G~~~gl~~~L~yLk~LGvt--~I~L~Pi~~~~~~~~~~~~~~~~~wgY~~~~~~~~~~G~~~elk~lV~~aH~~Gi~Vi 337 (788)
-+++..+.+..++.+++||. .+|.-= + |...+..+-++. ..++. ++++|+.+|++|+|+|
T Consensus 307 Y~nls~~~dvv~~~~~agiPld~~~~Di-------D---yMd~ykDFTvd~-----~~fp~---~~~fv~~Lh~~G~kyv 368 (805)
T KOG1065|consen 307 YKNLSVVRDVVENYRAAGIPLDVIVIDI-------D---YMDGYKDFTVDK-----VWFPD---LKDFVDDLHARGFKYV 368 (805)
T ss_pred cccHHHHHHHHHHHHHcCCCcceeeeeh-------h---hhhcccceeecc-----ccCcc---hHHHHHHHHhCCCeEE
Confidence 46677788888888888875 444110 0 000111112222 23444 9999999999999987
Q ss_pred EEeeeccccCCCCCCCccccCCCCCccceeeCCCCCc-c---cCCCCccccCCCCHHHHHHHHHHHHHHHHhcCccEEEE
Q 003901 338 MDVVFNHTVEGNDKGPILSFRGVDNSVYYMLAPKGEF-Y---NYSGCGNTFNCNHPVVRQFIVDCLRYWVTEMHVDGFRF 413 (788)
Q Consensus 338 lDvV~NH~~~~~~~~~~~~~~~~~~~~yy~~~~~g~~-~---~~~g~~~dln~~~p~vr~~i~d~l~~W~~e~gVDGFR~ 413 (788)
+=+-++-..... +..++.......+..+..|.- . -|.+.-.-.|+.+|.+.....+.++..-++.++|||=+
T Consensus 369 liidP~is~~~~----y~~y~~g~~~~v~I~~~~g~~~~lg~vwP~~~~fpDftnp~~~~Ww~~~~~~fh~~vp~dg~wi 444 (805)
T KOG1065|consen 369 LIIDPFISTNSS----YGPYDRGVAKDVLIKNREGSPKMLGEVWPGSTAFPDFTNPAVVEWWLDELKRFHDEVPFDGFWI 444 (805)
T ss_pred EEeCCccccCcc----chhhhhhhhhceeeecccCchhhhcccCCCcccccccCCchHHHHHHHHHHhhcccCCccceEE
Confidence 765532211111 111221122223333323322 1 12222234688999999999999888888899999999
Q ss_pred eccc
Q 003901 414 DLAS 417 (788)
Q Consensus 414 D~a~ 417 (788)
|+-.
T Consensus 445 DmnE 448 (805)
T KOG1065|consen 445 DMNE 448 (805)
T ss_pred ECCC
Confidence 9854
No 106
>cd06564 GH20_DspB_LnbB-like Glycosyl hydrolase family 20 (GH20) catalytic domain of dispersin B (DspB), lacto-N-biosidase (LnbB) and related proteins. Dispersin B is a soluble beta-N-acetylglucosamidase found in bacteria that hydrolyzes the beta-1,6-linkages of PGA (poly-beta-(1,6)-N-acetylglucosamine), a major component of the extracellular polysaccharide matrix. Lacto-N-biosidase hydrolyzes lacto-N-biose (LNB) type I oligosaccharides at the nonreducing terminus to produce lacto-N-biose as part of the GNB/LNB (galacto-N-biose/lacto-N-biose I) degradation pathway. The lacto-N-biosidase from Bifidobacterium bifidum has this GH20 domain, a carbohydrate binding module 32, and a bacterial immunoglobulin-like domain 2, as well as a YSIRK signal peptide and a G5 membrane anchor at the N and C termini, respectively. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=89.68 E-value=1.6 Score=47.83 Aligned_cols=130 Identities=17% Similarity=0.219 Sum_probs=74.3
Q ss_pred CHHHHHhhhHHHHHcCCCeEEEC-------cccccCccCccc-C--CCCCCCcccCCCCCCCCCCCcHHHHHHHHHHHHH
Q 003901 262 TYLGVVEKLDHLKDLGINCLELM-------PCHEFNELEYFS-Y--NSVLGDYNYSSAGIRNCGHDAINEFKLLVREAHK 331 (788)
Q Consensus 262 ~~~gl~~~L~yLk~LGvt~I~L~-------Pi~~~~~~~~~~-~--~~~~~~wgY~~~~~~~~~~G~~~elk~lV~~aH~ 331 (788)
+...|.+-|+.++.+++|.++|- ++-..+.....+ + ........+. .......+=|.+|+|++|+-|.+
T Consensus 15 ~~~~ik~~id~ma~~K~N~lhlHltD~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~-~~~~~~~~YT~~di~eiv~yA~~ 93 (326)
T cd06564 15 SMDFLKDIIKTMSWYKMNDLQLHLNDNLIFNLDDMSTTVNNATYASDDVKSGNNYY-NLTANDGYYTKEEFKELIAYAKD 93 (326)
T ss_pred CHHHHHHHHHHHHHcCCceEEEeecCCcccccCCCchhhhhhhhhccccccccccC-CCCCCCCcccHHHHHHHHHHHHH
Confidence 45667777899999999999971 111000000000 0 0000000000 00011223389999999999999
Q ss_pred cCCEEEEEe-eeccccCCCCCCCccccCCCCCccceeeCCCCCcccCCCCccccCCCCHHHHHHHHHHHHHHHHhcC
Q 003901 332 RGIEVVMDV-VFNHTVEGNDKGPILSFRGVDNSVYYMLAPKGEFYNYSGCGNTFNCNHPVVRQFIVDCLRYWVTEMH 407 (788)
Q Consensus 332 ~Gi~VilDv-V~NH~~~~~~~~~~~~~~~~~~~~yy~~~~~g~~~~~~g~~~dln~~~p~vr~~i~d~l~~W~~e~g 407 (788)
+||.||-.+ ++.|+..--...|.+... .. ........||..+|++.+++.+.+...++-|.
T Consensus 94 rgI~vIPEID~PGH~~a~~~~~pel~~~-----------~~----~~~~~~~~l~~~~~~t~~f~~~l~~E~~~~f~ 155 (326)
T cd06564 94 RGVNIIPEIDSPGHSLAFTKAMPELGLK-----------NP----FSKYDKDTLDISNPEAVKFVKALFDEYLDGFN 155 (326)
T ss_pred cCCeEeccCCCcHHHHHHHHhhHHhcCC-----------Cc----ccCCCcccccCCCHHHHHHHHHHHHHHHHhcC
Confidence 999999998 478985321111111100 00 11122357889999999999999999986555
No 107
>PLN03244 alpha-amylase; Provisional
Probab=89.09 E-value=0.44 Score=56.67 Aligned_cols=63 Identities=19% Similarity=0.342 Sum_probs=47.7
Q ss_pred cCCCCCCCCcEEeCC-cEEEEEEcCCCCEEEEEEEeCCCccCCceeeEEecc-cccCCCCCEEEEEEcCC
Q 003901 91 SKGYPTPFGATLRDG-GVNFSIFSSNAVSATLCLITLSDLQENKVTEEIALD-SFANKTGDVWHVFLKGD 158 (788)
Q Consensus 91 ~~g~~~~lGa~~~~~-~~~F~vwap~A~~V~L~l~~~~d~~~~~~~~~~~l~-~~~~~~~gvW~~~i~~~ 158 (788)
..|+ ..||.|...+ ++.|+-|||.|.-.+|+ ||||+|.++....-. .+.+.+-|+|++.++..
T Consensus 117 ~~~~-e~~g~~r~~~~~~~~~ewapga~~~~~~----gdfn~w~~~~~~~r~~~~~~~~~g~~~~~~~~~ 181 (872)
T PLN03244 117 ASGF-EILGMHRHMEHRVDFMDWAPGARYCAII----GDFNGWSPTENAAREGHFGHDDYGYWFIILEDK 181 (872)
T ss_pred hhhh-hhhccccCcccCceeEeecCCcceeeee----ccccCCCccccccccccccccccceEEEEechh
Confidence 3444 5799998875 89999999999999999 999999876433110 02344679999999864
No 108
>cd06565 GH20_GcnA-like Glycosyl hydrolase family 20 (GH20) catalytic domain of N-acetyl-beta-D-glucosaminidase (GcnA, also known as BhsA) and related proteins. GcnA is an exoglucosidase which cleaves N-acetyl-beta-D-galactosamine (NAG) and N-acetyl-beta-D-galactosamine residues from 4-methylumbelliferylated (4MU) substrates, as well as cleaving NAG from chito-oligosaccharides (i.e. NAG polymers). In contrast, sulfated forms of the substrate are unable to be cleaved and act instead as mild competitive inhibitors. Additionally, the enzyme is known to be poisoned by several first-row transition metals as well as by mercury. GcnA forms a homodimer with subunits comprised of three domains, an N-terminal zincin-like domain, this central catalytic GH20 domain, and a C-terminal alpha helical domain. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=88.60 E-value=3.6 Score=44.42 Aligned_cols=114 Identities=18% Similarity=0.060 Sum_probs=72.2
Q ss_pred CHHHHHhhhHHHHHcCCCeEEECcc--cccCccCcccCCCCCCCcccCCCCCCCCCCCcHHHHHHHHHHHHHcCCEEEEE
Q 003901 262 TYLGVVEKLDHLKDLGINCLELMPC--HEFNELEYFSYNSVLGDYNYSSAGIRNCGHDAINEFKLLVREAHKRGIEVVMD 339 (788)
Q Consensus 262 ~~~gl~~~L~yLk~LGvt~I~L~Pi--~~~~~~~~~~~~~~~~~wgY~~~~~~~~~~G~~~elk~lV~~aH~~Gi~VilD 339 (788)
+..-|.+.|+.++.+|+|.++|==- |++.+.. ..+ + ....=|.+|++++++-|.++||+||-.
T Consensus 15 ~~~~lk~~id~ma~~k~N~l~lhl~D~f~~~~~p--------~~~-~------~~~~yT~~ei~ei~~yA~~~gI~vIPe 79 (301)
T cd06565 15 KVSYLKKLLRLLALLGANGLLLYYEDTFPYEGEP--------EVG-R------MRGAYTKEEIREIDDYAAELGIEVIPL 79 (301)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEEecceecCCCc--------ccc-c------CCCCcCHHHHHHHHHHHHHcCCEEEec
Confidence 4566777889999999999987321 1111100 000 0 011227999999999999999999988
Q ss_pred ee-eccccCCCCCCCccccCCCCCccceeeCCCCCcccCCCCccccCCCCHHHHHHHHHHHHHHHHhcC
Q 003901 340 VV-FNHTVEGNDKGPILSFRGVDNSVYYMLAPKGEFYNYSGCGNTFNCNHPVVRQFIVDCLRYWVTEMH 407 (788)
Q Consensus 340 vV-~NH~~~~~~~~~~~~~~~~~~~~yy~~~~~g~~~~~~g~~~dln~~~p~vr~~i~d~l~~W~~e~g 407 (788)
+- +.|+..-- .. ..|-...+. ......||-.+|++.+++.+.+...++-+.
T Consensus 80 id~pGH~~~~l------~~-----~~~~~l~~~------~~~~~~l~~~~~~t~~fi~~li~ev~~~f~ 131 (301)
T cd06565 80 IQTLGHLEFIL------KH-----PEFRHLREV------DDPPQTLCPGEPKTYDFIEEMIRQVLELHP 131 (301)
T ss_pred CCCHHHHHHHH------hC-----ccccccccc------CCCCCccCCCChhHHHHHHHHHHHHHHhCC
Confidence 74 78874311 00 011111111 111256889999999999999999996444
No 109
>cd06601 GH31_lyase_GLase GLases (alpha-1,4-glucan lyases) are glycosyl hydrolase family 31 (GH31) enzymes that degrade alpha-1,4-glucans and maltooligosaccharides via a nonhydrolytic pathway to yield 1,5-D-anhydrofructose from the nonreducing end. GLases cleave the bond between C1 and O1 of the nonreducing sugar residue of alpha-glucans to generate a monosaccharide product with a double bond between C1 and C2. This family corresponds to subgroup 2 in the Ernst et al classification of GH31 enzymes.
Probab=88.44 E-value=1.2 Score=48.76 Aligned_cols=110 Identities=14% Similarity=0.204 Sum_probs=67.0
Q ss_pred CHHHHHhhhHHHHHcCC--CeEEECcccccCccCcccCCCCCCCcccCCCCCCCCCCCcHHHHHHHHHHHHHcCCEEEEE
Q 003901 262 TYLGVVEKLDHLKDLGI--NCLELMPCHEFNELEYFSYNSVLGDYNYSSAGIRNCGHDAINEFKLLVREAHKRGIEVVMD 339 (788)
Q Consensus 262 ~~~gl~~~L~yLk~LGv--t~I~L~Pi~~~~~~~~~~~~~~~~~wgY~~~~~~~~~~G~~~elk~lV~~aH~~Gi~VilD 339 (788)
+-..+.+-++.+++.+| ++|||=.=+. ..+..|.++.. +|-. .++||+++|++|++||+-
T Consensus 22 ~~~ev~~v~~~~r~~~IP~D~i~lDidy~----------~~~~~Ft~d~~-----~FPd---p~~mv~~L~~~G~klv~~ 83 (332)
T cd06601 22 NRSDLEEVVEGYRDNNIPLDGLHVDVDFQ----------DNYRTFTTNGG-----GFPN---PKEMFDNLHNKGLKCSTN 83 (332)
T ss_pred CHHHHHHHHHHHHHcCCCCceEEEcCchh----------cCCCceeecCC-----CCCC---HHHHHHHHHHCCCeEEEE
Confidence 34556666677776554 5666433111 01112233332 3433 478999999999999887
Q ss_pred eeeccccCCCCCCCccccCCCCCccceeeCCCCCcccCCCCccccCCCCHHHHHHHHHHHHHHHHhcCccEEEEeccc
Q 003901 340 VVFNHTVEGNDKGPILSFRGVDNSVYYMLAPKGEFYNYSGCGNTFNCNHPVVRQFIVDCLRYWVTEMHVDGFRFDLAS 417 (788)
Q Consensus 340 vV~NH~~~~~~~~~~~~~~~~~~~~yy~~~~~g~~~~~~g~~~dln~~~p~vr~~i~d~l~~W~~e~gVDGFR~D~a~ 417 (788)
+.+- ...+.. +.+.+.-.|+.||++|++..+.++.+. +.|||||=+|...
T Consensus 84 i~P~-i~~g~~--------------------------~~~~~~~pDftnp~ar~wW~~~~~~l~-~~Gv~~~W~DmnE 133 (332)
T cd06601 84 ITPV-ISYGGG--------------------------LGSPGLYPDLGRPDVREWWGNQYKYLF-DIGLEFVWQDMTT 133 (332)
T ss_pred ecCc-eecCcc--------------------------CCCCceeeCCCCHHHHHHHHHHHHHHH-hCCCceeecCCCC
Confidence 6532 111100 001122357889999999888888887 7899999999654
No 110
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=88.09 E-value=2.2 Score=47.69 Aligned_cols=123 Identities=18% Similarity=0.202 Sum_probs=66.7
Q ss_pred HHHHhhhHHHHHcCCCeEEECcccccCccCcccCCCCCCCcccCCCCCCCCCCCcHHHHHHHHHHHHHcCCEEEEEeeec
Q 003901 264 LGVVEKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYNYSSAGIRNCGHDAINEFKLLVREAHKRGIEVVMDVVFN 343 (788)
Q Consensus 264 ~gl~~~L~yLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~wgY~~~~~~~~~~G~~~elk~lV~~aH~~Gi~VilDvV~N 343 (788)
..+.+.|.-+|++|||+|-|..+.-..-. + ..+ .| .-..|..+|+.|+++||+|||-+. .
T Consensus 10 e~~~~d~~~m~~~G~n~vri~~~~W~~lE----P--~eG--~y-----------dF~~lD~~l~~a~~~Gi~viL~~~-~ 69 (374)
T PF02449_consen 10 EEWEEDLRLMKEAGFNTVRIGEFSWSWLE----P--EEG--QY-----------DFSWLDRVLDLAAKHGIKVILGTP-T 69 (374)
T ss_dssp CHHHHHHHHHHHHT-SEEEE-CCEHHHH-----S--BTT--B--------------HHHHHHHHHHHCTT-EEEEEEC-T
T ss_pred HHHHHHHHHHHHcCCCEEEEEEechhhcc----C--CCC--ee-----------ecHHHHHHHHHHHhccCeEEEEec-c
Confidence 44667789999999999998765321000 0 000 11 135589999999999999999775 2
Q ss_pred cccCCCCCCCccccCCCCCccceeeCCCCCcccCCCCccccCCCCHHHHHHHHHHHHHHHHhcC----ccEEEEec
Q 003901 344 HTVEGNDKGPILSFRGVDNSVYYMLAPKGEFYNYSGCGNTFNCNHPVVRQFIVDCLRYWVTEMH----VDGFRFDL 415 (788)
Q Consensus 344 H~~~~~~~~~~~~~~~~~~~~yy~~~~~g~~~~~~g~~~dln~~~p~vr~~i~d~l~~W~~e~g----VDGFR~D~ 415 (788)
+.. |....+. .+..-..+.+|.... .|....++..+|.+|+++...++..++.|+ |-|+-+|.
T Consensus 70 ~~~------P~Wl~~~--~Pe~~~~~~~g~~~~-~g~~~~~~~~~p~yr~~~~~~~~~l~~~y~~~p~vi~~~i~N 136 (374)
T PF02449_consen 70 AAP------PAWLYDK--YPEILPVDADGRRRG-FGSRQHYCPNSPAYREYARRFIRALAERYGDHPAVIGWQIDN 136 (374)
T ss_dssp TTS-------HHHHCC--SGCCC-B-TTTSBEE-CCCSTT-HCCHHHHHHHHHHHHHHHHHHHTTTTTEEEEEECC
T ss_pred ccc------ccchhhh--cccccccCCCCCcCc-cCCccccchhHHHHHHHHHHHHHHHHhhccccceEEEEEecc
Confidence 211 1111110 111112223333221 122234577889999998887777765554 66777764
No 111
>cd02871 GH18_chitinase_D-like GH18 domain of Chitinase D (ChiD). ChiD, a chitinase found in Bacillus circulans, hydrolyzes the 1,4-beta-linkages of N-acetylglucosamine in chitin and chitodextrins. The domain architecture of ChiD includes a catalytic glycosyl hydrolase family 18 (GH18) domain, a chitin-binding domain, and a fibronectin type III domain. The chitin-binding and fibronectin type III domains are located either N-terminal or C-terminal to the catalytic domain. This family includes exochitinase Chi36 from Bacillus cereus.
Probab=87.60 E-value=2.1 Score=46.50 Aligned_cols=63 Identities=27% Similarity=0.458 Sum_probs=47.7
Q ss_pred cHHHHHHHHHHHHHcCCEEEEEeeeccccCCCCCCCccccCCCCCccceeeCCCCCcccCCCCccccCCCCHHHHHHHHH
Q 003901 318 AINEFKLLVREAHKRGIEVVMDVVFNHTVEGNDKGPILSFRGVDNSVYYMLAPKGEFYNYSGCGNTFNCNHPVVRQFIVD 397 (788)
Q Consensus 318 ~~~elk~lV~~aH~~Gi~VilDvV~NH~~~~~~~~~~~~~~~~~~~~yy~~~~~g~~~~~~g~~~dln~~~p~vr~~i~d 397 (788)
+..++++-|+.||++|++||+-+ + +. . +. ....++.-|+.+++
T Consensus 58 ~~~~~~~~i~~~q~~G~KVllSi-----G-G~-~--------------------~~----------~~~~~~~~~~~fa~ 100 (312)
T cd02871 58 SPAEFKADIKALQAKGKKVLISI-----G-GA-N--------------------GH----------VDLNHTAQEDNFVD 100 (312)
T ss_pred ChHHHHHHHHHHHHCCCEEEEEE-----e-CC-C--------------------Cc----------cccCCHHHHHHHHH
Confidence 56789999999999999999865 1 10 0 00 01235667888999
Q ss_pred HHHHHHHhcCccEEEEeccc
Q 003901 398 CLRYWVTEMHVDGFRFDLAS 417 (788)
Q Consensus 398 ~l~~W~~e~gVDGFR~D~a~ 417 (788)
++..+++++|+||+=||--.
T Consensus 101 sl~~~~~~~g~DGiDiD~E~ 120 (312)
T cd02871 101 SIVAIIKEYGFDGLDIDLES 120 (312)
T ss_pred HHHHHHHHhCCCeEEEeccc
Confidence 99999999999999999643
No 112
>cd06589 GH31 The enzymes of glycosyl hydrolase family 31 (GH31) occur in prokaryotes, eukaryotes, and archaea with a wide range of hydrolytic activities, including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. In most cases, the pyranose moiety recognized in subsite -1 of the substrate binding site is an alpha-D-glucose, though some GH31 family members show a preference for alpha-D-xylose. Several GH31 enzymes can accommodate both glucose and xylose and different levels of discrimination between the two have been observed. Most characterized GH31 enzymes are alpha-glucosidases. In mammals, GH31 members with alpha-glucosidase activity are implicated in at least three distinct biological processes
Probab=87.54 E-value=3.5 Score=43.62 Aligned_cols=94 Identities=19% Similarity=0.348 Sum_probs=61.9
Q ss_pred cCHHHHHhhhHHHHHcC--CCeEEECcccccCccCcccCCCCCCCc--ccCCCCCCCCCCCcHHHHHHHHHHHHHcCCEE
Q 003901 261 GTYLGVVEKLDHLKDLG--INCLELMPCHEFNELEYFSYNSVLGDY--NYSSAGIRNCGHDAINEFKLLVREAHKRGIEV 336 (788)
Q Consensus 261 G~~~gl~~~L~yLk~LG--vt~I~L~Pi~~~~~~~~~~~~~~~~~w--gY~~~~~~~~~~G~~~elk~lV~~aH~~Gi~V 336 (788)
.+-..+.+.++.+++.| +++|+|-.-+... +..+ .++.. +| .+.++||+.+|++|++|
T Consensus 21 ~~~~~v~~~~~~~~~~~iP~d~~~lD~~~~~~----------~~~f~~~~d~~-----~F---pdp~~~i~~l~~~g~~~ 82 (265)
T cd06589 21 GDQDKVLEVIDGMRENDIPLDGFVLDDDYTDG----------YGDFTFDWDAG-----KF---PNPKSMIDELHDNGVKL 82 (265)
T ss_pred CCHHHHHHHHHHHHHcCCCccEEEECcccccC----------CceeeeecChh-----hC---CCHHHHHHHHHHCCCEE
Confidence 46677888888888755 4577765433321 1112 33332 23 23688999999999999
Q ss_pred EEEeeeccccCCCCCCCccccCCCCCccceeeCCCCCcccCCCCccccCCCCHHHHHHHHHHHHHHHHhcCccEEEEecc
Q 003901 337 VMDVVFNHTVEGNDKGPILSFRGVDNSVYYMLAPKGEFYNYSGCGNTFNCNHPVVRQFIVDCLRYWVTEMHVDGFRFDLA 416 (788)
Q Consensus 337 ilDvV~NH~~~~~~~~~~~~~~~~~~~~yy~~~~~g~~~~~~g~~~dln~~~p~vr~~i~d~l~~W~~e~gVDGFR~D~a 416 (788)
++-+.+. |++...+.++..+.++|||||=+|..
T Consensus 83 ~~~~~P~-----------------------------------------------v~~w~~~~~~~~~~~~Gvdg~w~D~~ 115 (265)
T cd06589 83 VLWIDPY-----------------------------------------------IREWWAEVVKKLLVSLGVDGFWTDMG 115 (265)
T ss_pred EEEeChh-----------------------------------------------HHHHHHHHHHHhhccCCCCEEeccCC
Confidence 9866321 15666666666655899999999976
Q ss_pred ccc
Q 003901 417 SIM 419 (788)
Q Consensus 417 ~~l 419 (788)
...
T Consensus 116 E~~ 118 (265)
T cd06589 116 EPS 118 (265)
T ss_pred CCC
Confidence 543
No 113
>cd02875 GH18_chitobiase Chitobiase (also known as di-N-acetylchitobiase) is a lysosomal glycosidase that hydrolyzes the reducing-end N-acetylglucosamine from the chitobiose core of oligosaccharides during the ordered degradation of asparagine-linked glycoproteins in eukaryotes. Chitobiase can only do so if the asparagine that joins the oligosaccharide to protein is previously removed by a glycosylasparaginase. Chitobiase is therefore the final step in the lysosomal degradation of the protein/carbohydrate linkage component of asparagine-linked glycoproteins. The catalytic domain of chitobiase is an eight-stranded alpha/beta barrel fold similar to that of other family 18 glycosyl hydrolases such as hevamine and chitotriosidase.
Probab=87.49 E-value=1.2 Score=49.45 Aligned_cols=55 Identities=18% Similarity=0.274 Sum_probs=42.4
Q ss_pred HHHHHHHHHcCCEEEEEeeeccccCCCCCCCccccCCCCCccceeeCCCCCcccCCCCccccCCCCHHHHHHHHHHHHHH
Q 003901 323 KLLVREAHKRGIEVVMDVVFNHTVEGNDKGPILSFRGVDNSVYYMLAPKGEFYNYSGCGNTFNCNHPVVRQFIVDCLRYW 402 (788)
Q Consensus 323 k~lV~~aH~~Gi~VilDvV~NH~~~~~~~~~~~~~~~~~~~~yy~~~~~g~~~~~~g~~~dln~~~p~vr~~i~d~l~~W 402 (788)
++|+..||++|++|++..-+.. . ...++..|+.+++++.-+
T Consensus 67 ~~~~~~A~~~~v~v~~~~~~~~-------------------------------------~--~l~~~~~R~~fi~siv~~ 107 (358)
T cd02875 67 DELLCYAHSKGVRLVLKGDVPL-------------------------------------E--QISNPTYRTQWIQQKVEL 107 (358)
T ss_pred HHHHHHHHHcCCEEEEECccCH-------------------------------------H--HcCCHHHHHHHHHHHHHH
Confidence 5889999999999996410000 0 134678899999999999
Q ss_pred HHhcCccEEEEecc
Q 003901 403 VTEMHVDGFRFDLA 416 (788)
Q Consensus 403 ~~e~gVDGFR~D~a 416 (788)
++++|.||+-+|--
T Consensus 108 ~~~~gfDGIdIDwE 121 (358)
T cd02875 108 AKSQFMDGINIDIE 121 (358)
T ss_pred HHHhCCCeEEEccc
Confidence 99999999999854
No 114
>cd06563 GH20_chitobiase-like The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This GH20 domain family includes an N-acetylglucosamidase (GlcNAcase A) from Pseudoalteromonas piscicida and an N-acetylhexosaminidase (SpHex) from Streptomyces plicatus. SpHex lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=87.46 E-value=4.1 Score=45.18 Aligned_cols=135 Identities=18% Similarity=0.170 Sum_probs=73.6
Q ss_pred HHHHHhhhHHHHHcCCCeEEECcc---------cccCccCccc---CCCCCCCcccCCCCCCCCCCCcHHHHHHHHHHHH
Q 003901 263 YLGVVEKLDHLKDLGINCLELMPC---------HEFNELEYFS---YNSVLGDYNYSSAGIRNCGHDAINEFKLLVREAH 330 (788)
Q Consensus 263 ~~gl~~~L~yLk~LGvt~I~L~Pi---------~~~~~~~~~~---~~~~~~~wgY~~~~~~~~~~G~~~elk~lV~~aH 330 (788)
...|.+.|+.++.+++|.++|--. -.++.....+ .....+.-.+.........+=|.+|+|++|+-|.
T Consensus 17 ~~~ik~~Id~ma~~K~N~lhlHltDdq~~rle~~~~P~Lt~~ga~~~~~~~~~~~~~~~~~~~~~~YT~~di~eiv~yA~ 96 (357)
T cd06563 17 VDEVKRFIDLMALYKLNVFHWHLTDDQGWRIEIKKYPKLTEVGAWRGPTEIGLPQGGGDGTPYGGFYTQEEIREIVAYAA 96 (357)
T ss_pred HHHHHHHHHHHHHhccceEEEeeecCCCceecccCcchhhhcccccCcccccccccccCCCccCceECHHHHHHHHHHHH
Confidence 566777789999999999997321 1111100000 0000000000000001112227999999999999
Q ss_pred HcCCEEEEEee-eccccCCCCCCCccccCCCCCccceeeCCCCCccc-CCCCccccCCCCHHHHHHHHHHHHHHHHhcC
Q 003901 331 KRGIEVVMDVV-FNHTVEGNDKGPILSFRGVDNSVYYMLAPKGEFYN-YSGCGNTFNCNHPVVRQFIVDCLRYWVTEMH 407 (788)
Q Consensus 331 ~~Gi~VilDvV-~NH~~~~~~~~~~~~~~~~~~~~yy~~~~~g~~~~-~~g~~~dln~~~p~vr~~i~d~l~~W~~e~g 407 (788)
++||+||-.+- +.|+..--...|.+.-.+ +...+.. .....+.||-.+|.+.+++.+.+...++-|.
T Consensus 97 ~rgI~VIPEID~PGH~~a~l~~~pel~~~~----------~~~~~~~~~~~~~~~L~~~~~~t~~f~~~ll~E~~~lF~ 165 (357)
T cd06563 97 ERGITVIPEIDMPGHALAALAAYPELGCTG----------GPGSVVSVQGVVSNVLCPGKPETYTFLEDVLDEVAELFP 165 (357)
T ss_pred HcCCEEEEecCCchhHHHHHHhCccccCCC----------CCCccccccCcCCCccCCCChhHHHHHHHHHHHHHHhCC
Confidence 99999999984 789853211111111000 0000111 1111246899999999999999999985443
No 115
>cd02742 GH20_hexosaminidase Beta-N-acetylhexosaminidases of glycosyl hydrolase family 20 (GH20) catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. These enzymes are broadly distributed in microorganisms, plants and animals, and play roles in various key physiological and pathological processes. These processes include cell structural integrity, energy storage, cellular signaling, fertilization, pathogen defense, viral penetration, the development of carcinomas, inflammatory events and lysosomal storage disorders. The GH20 enzymes include the eukaryotic beta-N-acetylhexosaminidases A and B, the bacterial chitobiases, dispersin B, and lacto-N-biosidase. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by the solvent or the enzyme, but by the substrate itself.
Probab=87.28 E-value=2.9 Score=45.20 Aligned_cols=120 Identities=17% Similarity=0.158 Sum_probs=72.9
Q ss_pred CHHHHHhhhHHHHHcCCCeEEECcccccCccCcccCCCCCCCcccCCCCC-------------CCCCCCcHHHHHHHHHH
Q 003901 262 TYLGVVEKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYNYSSAGI-------------RNCGHDAINEFKLLVRE 328 (788)
Q Consensus 262 ~~~gl~~~L~yLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~wgY~~~~~-------------~~~~~G~~~elk~lV~~ 328 (788)
+...|.+-|+.++.+++|.++|-=. +.. .|++....+ ....+=|.+|++++|+-
T Consensus 14 ~~~~lk~~id~ma~~K~N~lhlHl~-D~~------------~~~le~~~~p~l~~~g~~~~~~~~~~~yT~~di~elv~y 80 (303)
T cd02742 14 SVESIKRTIDVLARYKINTFHWHLT-DDQ------------AWRIESKKFPELAEKGGQINPRSPGGFYTYAQLKDIIEY 80 (303)
T ss_pred CHHHHHHHHHHHHHhCCcEEEEeee-cCC------------CceEeeCccchhhhhcccccCCCCCCeECHHHHHHHHHH
Confidence 4566777789999999999986311 100 011111100 01122379999999999
Q ss_pred HHHcCCEEEEEee-eccccCCCCCCCccccCCCCCccceeeCCCCCcccCCCCccccCCCCHHHHHHHHHHHHHHHHhc
Q 003901 329 AHKRGIEVVMDVV-FNHTVEGNDKGPILSFRGVDNSVYYMLAPKGEFYNYSGCGNTFNCNHPVVRQFIVDCLRYWVTEM 406 (788)
Q Consensus 329 aH~~Gi~VilDvV-~NH~~~~~~~~~~~~~~~~~~~~yy~~~~~g~~~~~~g~~~dln~~~p~vr~~i~d~l~~W~~e~ 406 (788)
|.++||+||-.+- +.|+..--...|........ + ..+......||..+|++.+++.+.+..+++-+
T Consensus 81 A~~rgI~viPEiD~PGH~~a~~~~~p~l~~~~~~----------~--~~~~~~~~~l~~~~~~t~~fl~~l~~e~~~lf 147 (303)
T cd02742 81 AAARGIEVIPEIDMPGHSTAFVKSFPKLLTECYA----------G--LKLRDVFDPLDPTLPKGYDFLDDLFGEIAELF 147 (303)
T ss_pred HHHcCCEEEEeccchHHHHHHHHhCHHhccCccc----------c--CCCCCCCCccCCCCccHHHHHHHHHHHHHHhC
Confidence 9999999999994 79985421111111000000 0 00111224688999999999999999999533
No 116
>PF01301 Glyco_hydro_35: Glycosyl hydrolases family 35; InterPro: IPR001944 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 35 GH35 from CAZY comprises enzymes with only one known activity; beta-galactosidase (3.2.1.23 from EC). Mammalian beta-galactosidase is a lysosomal enzyme (gene GLB1) which cleaves the terminal galactose from gangliosides, glycoproteins, and glycosaminoglycans and whose deficiency is the cause of the genetic disease Gm(1) gangliosidosis (Morquio disease type B).; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3OGS_A 3OGV_A 3OGR_A 3OG2_A 1TG7_A 1XC6_A 3THC_C 3THD_D 3D3A_A 4E8D_B ....
Probab=87.27 E-value=0.54 Score=51.21 Aligned_cols=61 Identities=16% Similarity=0.261 Sum_probs=37.2
Q ss_pred HHHHhhhHHHHHcCCCeEEECcccccCccCcccCCCCCCCcccCCCCCCCCCCCcHHHHHHHHHHHHHcCCEEEEEee
Q 003901 264 LGVVEKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYNYSSAGIRNCGHDAINEFKLLVREAHKRGIEVVMDVV 341 (788)
Q Consensus 264 ~gl~~~L~yLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~wgY~~~~~~~~~~G~~~elk~lV~~aH~~Gi~VilDvV 341 (788)
+-..+.|..+|++|+|+|..-=.+...+.. .+ .| .+....||..|++.|+++||.|||-.=
T Consensus 24 ~~W~~~l~k~ka~G~n~v~~yv~W~~he~~-------~g--~~--------df~g~~dl~~f~~~a~~~gl~vilrpG 84 (319)
T PF01301_consen 24 EYWRDRLQKMKAAGLNTVSTYVPWNLHEPE-------EG--QF--------DFTGNRDLDRFLDLAQENGLYVILRPG 84 (319)
T ss_dssp GGHHHHHHHHHHTT-SEEEEE--HHHHSSB-------TT--B-----------SGGG-HHHHHHHHHHTT-EEEEEEE
T ss_pred hHHHHHHHHHHhCCcceEEEeccccccCCC-------CC--cc--------cccchhhHHHHHHHHHHcCcEEEeccc
Confidence 345678899999999999863322211100 00 11 133468899999999999999998753
No 117
>COG3589 Uncharacterized conserved protein [Function unknown]
Probab=86.72 E-value=0.78 Score=48.96 Aligned_cols=58 Identities=21% Similarity=0.220 Sum_probs=38.1
Q ss_pred HHHhhhHHHHHcCCCeEEECcccccCccCcccCCCCCCCcccCCCCCCCCCCCcHHHHHHHHHHHHHcCCEEEEEeeecc
Q 003901 265 GVVEKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYNYSSAGIRNCGHDAINEFKLLVREAHKRGIEVVMDVVFNH 344 (788)
Q Consensus 265 gl~~~L~yLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~wgY~~~~~~~~~~G~~~elk~lV~~aH~~Gi~VilDvV~NH 344 (788)
.-++-|+...+.|++-|...=..... | .-+-..-|++|++.||+.||+||+||-+.-
T Consensus 17 ~~~~Yi~~~~~~Gf~~IFtsl~~~~~-------------~----------~~~~~~~~~ell~~Anklg~~vivDvnPsi 73 (360)
T COG3589 17 KDIAYIDRMHKYGFKRIFTSLLIPEE-------------D----------AELYFHRFKELLKEANKLGLRVIVDVNPSI 73 (360)
T ss_pred hHHHHHHHHHHcCccceeeecccCCc-------------h----------HHHHHHHHHHHHHHHHhcCcEEEEEcCHHH
Confidence 33444566667899998743221100 0 112245699999999999999999997654
Q ss_pred c
Q 003901 345 T 345 (788)
Q Consensus 345 ~ 345 (788)
.
T Consensus 74 l 74 (360)
T COG3589 74 L 74 (360)
T ss_pred H
Confidence 4
No 118
>PLN02950 4-alpha-glucanotransferase
Probab=86.23 E-value=18 Score=44.95 Aligned_cols=32 Identities=19% Similarity=0.402 Sum_probs=29.1
Q ss_pred CCcCHHHHHhhhHHHHHcCCCeEEECcccccC
Q 003901 259 HPGTYLGVVEKLDHLKDLGINCLELMPCHEFN 290 (788)
Q Consensus 259 ~~G~~~gl~~~L~yLk~LGvt~I~L~Pi~~~~ 290 (788)
+.|||.++.+-++.+++.|.+.|+|+|+.+..
T Consensus 278 GIGDf~dl~~~id~~a~~G~~~~QilPl~~t~ 309 (909)
T PLN02950 278 GVGEFLDLKLLVDWAVKSGLHLVQLLPVNDTS 309 (909)
T ss_pred CeeCHHHHHHHHHHHHHcCCCEEEECCCCCCC
Confidence 57999999999999999999999999998743
No 119
>PF02446 Glyco_hydro_77: 4-alpha-glucanotransferase; InterPro: IPR003385 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The enzymes in this entry (2.4.1.25 from EC) belong to the glycoside hydrolase family 77 GH77 from CAZY, and transfer a segment of a (1,4)-alpha-D-glucan to a new 4-position in an acceptor, which may be glucose or (1,4)-alpha-D-glucan []. They belong to the disproportionating family of enzymes.; GO: 0004134 4-alpha-glucanotransferase activity, 0005975 carbohydrate metabolic process; PDB: 1TZ7_A 2X1I_A 2OWX_A 2OWW_A 1FP9_A 1CWY_A 1ESW_A 1FP8_A 2OWC_A 1X1N_A.
Probab=85.63 E-value=1.6 Score=50.53 Aligned_cols=24 Identities=21% Similarity=0.317 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHcCCEEEEEeeec
Q 003901 320 NEFKLLVREAHKRGIEVVMDVVFN 343 (788)
Q Consensus 320 ~elk~lV~~aH~~Gi~VilDvV~N 343 (788)
++++++.+.|+++||++|.|+-+-
T Consensus 192 ~Q~~~~~~~A~~~gI~L~gDlpig 215 (496)
T PF02446_consen 192 KQWKAAKEYAREMGIGLIGDLPIG 215 (496)
T ss_dssp HHHHHHHHHHHHTT-EEEEEEESS
T ss_pred HHHHHHHHHHHHCCCEEEEeccce
Confidence 468888889999999999999854
No 120
>PF09154 DUF1939: Domain of unknown function (DUF1939); InterPro: IPR015237 This entry represents a C-terminal domain associated with prokaryotic alpha-amylases. It adopts a secondary structure consisting of an eight-stranded antiparallel beta-sheet containing a Greek key motif. Its exact function has not, as yet, been determined []. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 1MXD_A 1MWO_A 1MXG_A 1W9X_A 2DIE_A 1VJS_A 1BPL_B 1BLI_A 1OB0_A 1E3Z_A ....
Probab=85.49 E-value=1.2 Score=35.13 Aligned_cols=55 Identities=13% Similarity=0.006 Sum_probs=35.4
Q ss_pred EEEEEeCCCCcEEEECCC-CCCCCeEEEecCCCCCCCCccCCCCchhhhhhhhcCCCCCCeeEEeeCCeEEEE
Q 003901 709 IYVAFNASHLPVIISLPK-RPGYRWEPLVDTSKPEPFDFLSSDLPAKEIAIKQYAPFLDANLYPMLSYSSIIL 780 (788)
Q Consensus 709 i~Vv~N~~~~~~~v~Lp~-~~g~~w~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~~vl 780 (788)
++|++|.++..+++.+.. .+|..|.+++..... .+..++ .+.+.|+|||.|..|+
T Consensus 1 L~v~iN~~~~~k~~~Vgt~~ag~~~~D~tGn~~~---~vtid~--------------dG~~~f~v~~~s~SVW 56 (57)
T PF09154_consen 1 LAVYINGSAGWKRMWVGTNWAGKTFYDYTGNSSE---TVTIDE--------------DGWGEFPVPPGSVSVW 56 (57)
T ss_dssp EEEEEE-SSSEEEEEEEGGGTTEEEEETTSSSSS---EEEE-T--------------TSEEEEEE-TTEEEEE
T ss_pred CEEEEeCCCCeEEEEEccccCCCEEEEccCCCCC---eEEECC--------------CeEEEEEECCCEEEEe
Confidence 456679999998888887 346667776644331 111111 4568999999999987
No 121
>COG1523 PulA Type II secretory pathway, pullulanase PulA and related glycosidases [Carbohydrate transport and metabolism]
Probab=85.24 E-value=2.9 Score=49.91 Aligned_cols=84 Identities=20% Similarity=0.302 Sum_probs=54.1
Q ss_pred CCCCcEEeCCcEEEEEEcCCCCEEEEEEEeCCCccCCceeeEEecccccCCCCCEEEEEEcCCCCCc-------eeeEEE
Q 003901 96 TPFGATLRDGGVNFSIFSSNAVSATLCLITLSDLQENKVTEEIALDSFANKTGDVWHVFLKGDFKDM-------LYGYKF 168 (788)
Q Consensus 96 ~~lGa~~~~~~~~F~vwap~A~~V~L~l~~~~d~~~~~~~~~~~l~~~~~~~~gvW~~~i~~~~~~~-------~Y~y~~ 168 (788)
..+|+ .|++|+|.|+.+++.+|+..+.........+.+.+ -.-|.|...|.++.... .|.|.+
T Consensus 65 ~~~G~-------iw~~~~p~~~~g~~y~yr~~g~~~~~~g~~f~~~k---~l~dpya~~l~g~~~~~~~~~~~y~~~~~~ 134 (697)
T COG1523 65 GELGA-------IWHLWLPGAKPGQVYGYRVHGPYDPEEGHRFDPNK---LLLDPYAKALDGDLKWGTPALFGYYYGYQI 134 (697)
T ss_pred Ccccc-------EEEEEcCCCceeeEEEEecCCCcCCccCeeecccc---ccccceeEEeccccccCccccccccccccc
Confidence 35777 89999999999999999964422222334454433 24589999998875433 333444
Q ss_pred cCCcCCCCCcccCCcccccCcccceeeecc
Q 003901 169 DGKFSPQEGHYFDPTKIVLDPYAKAVISRA 198 (788)
Q Consensus 169 ~g~~~~~~g~~~~~~~~~~DPya~~~~~~~ 198 (788)
... + +.+...|||+|+++.+.
T Consensus 135 ~~~-----~----~~~~~~~~~~Ksvv~~~ 155 (697)
T COG1523 135 TNL-----S----PDRDSADPYPKSVVIDP 155 (697)
T ss_pred ccc-----C----ccccccccCCceEEecc
Confidence 311 0 11345789999987765
No 122
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=84.56 E-value=3.1 Score=40.79 Aligned_cols=72 Identities=17% Similarity=0.188 Sum_probs=46.6
Q ss_pred HHHHHhhhHHHHHcCCCeEEECcccccCccCcccCCCCCCCcccCCCCCCCCCCCcHHHHHHHHHHHHHcCCEEEEEeee
Q 003901 263 YLGVVEKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYNYSSAGIRNCGHDAINEFKLLVREAHKRGIEVVMDVVF 342 (788)
Q Consensus 263 ~~gl~~~L~yLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~wgY~~~~~~~~~~G~~~elk~lV~~aH~~Gi~VilDvV~ 342 (788)
-....+.+.++|++||++|-|.=.-- . .. . .+. ..+.+. ....+..+-+..+.++|.+.||+|++-+-+
T Consensus 19 ~~~W~~~~~~m~~~GidtlIlq~~~~-~-~~--~---~yp-s~~~~~---~~~~~~~d~l~~~L~~A~~~Gmkv~~Gl~~ 87 (166)
T PF14488_consen 19 PAQWREEFRAMKAIGIDTLILQWTGY-G-GF--A---FYP-SKLSPG---GFYMPPVDLLEMILDAADKYGMKVFVGLYF 87 (166)
T ss_pred HHHHHHHHHHHHHcCCcEEEEEEeec-C-Cc--c---cCC-ccccCc---cccCCcccHHHHHHHHHHHcCCEEEEeCCC
Confidence 36678889999999999998761110 0 00 0 000 011011 112356777999999999999999998887
Q ss_pred ccc
Q 003901 343 NHT 345 (788)
Q Consensus 343 NH~ 345 (788)
+..
T Consensus 88 ~~~ 90 (166)
T PF14488_consen 88 DPD 90 (166)
T ss_pred Cch
Confidence 763
No 123
>TIGR01531 glyc_debranch glycogen debranching enzymye. glycogen debranching enzyme possesses two different catalytic activities; oligo-1,4--1,4-glucantransferase (EC 2.4.1.25) and amylo-1,6-glucosidase (EC 3.2.1.33). Site directed mutagenesis studies in S. cerevisiae indicate that the transferase and glucosidase activities are independent and located in different regions of the polypeptide chain. Proteins in this model belong to the larger alpha-amylase family. The model covers eukaryotic proteins with a seed composed of human, nematode and yeast sequences. Yeast seed sequence is well characterized. The model is quite rigorous; either query sequence yields large bit score or it fails to hit the model altogether. There doesn't appear to be any middle ground.
Probab=84.11 E-value=16 Score=46.84 Aligned_cols=60 Identities=17% Similarity=0.197 Sum_probs=43.6
Q ss_pred CCHHHHHHHHHHHHHHHHhcCccEEEEecccccccCCCccccccccCccccCCccccCCCCCChHHHHHHHcCCccccce
Q 003901 387 NHPVVRQFIVDCLRYWVTEMHVDGFRFDLASIMTRGSSLWDSVNVYGIPIEGDLLTTGTPLRSPPLIDLISNDPILRGVK 466 (788)
Q Consensus 387 ~~p~vr~~i~d~l~~W~~e~gVDGFR~D~a~~l~~~~~~w~~~~~~g~~~~~~~~~~g~~~~~~~~~~~i~~~~~~~~~~ 466 (788)
++|.++++|.+..+.-.+ -++|||+|.++-.+... .+.++++.+. +.|+.+
T Consensus 487 DsP~LW~~M~~Y~~~~Ak--iF~G~RiDNCHSTPlhV-------------------------aeylLd~AR~--vnPnLy 537 (1464)
T TIGR01531 487 DSPYLWQHMKEYTEMTAR--IFDGVRIDNCHSTPIHV-------------------------AEYLLDAARK--YNPNLY 537 (1464)
T ss_pred CCHHHHHHHHHHHHHHHH--hhcceeeecccCCcHHH-------------------------HHHHHHHHhh--cCCCeE
Confidence 679999999998887775 78999999998654210 0124454443 678999
Q ss_pred eeeeeccCC
Q 003901 467 LIAEAWDTG 475 (788)
Q Consensus 467 ligE~w~~~ 475 (788)
++||-+..+
T Consensus 538 V~AELFTGS 546 (1464)
T TIGR01531 538 VVAELFTGS 546 (1464)
T ss_pred EEeeecCCc
Confidence 999987654
No 124
>cd06545 GH18_3CO4_chitinase The Bacteroides thetaiotaomicron protein represented by pdb structure 3CO4 is an uncharacterized bacterial member of the family 18 glycosyl hydrolases with homologs found in Flavobacterium, Stigmatella, and Pseudomonas.
Probab=84.10 E-value=3.2 Score=43.59 Aligned_cols=64 Identities=22% Similarity=0.442 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHHcCCEEEEEeeeccccCCCCCCCccccCCCCCccceeeCCCCCcccCCCCccccCCCCHHHHHHHHHH
Q 003901 319 INEFKLLVREAHKRGIEVVMDVVFNHTVEGNDKGPILSFRGVDNSVYYMLAPKGEFYNYSGCGNTFNCNHPVVRQFIVDC 398 (788)
Q Consensus 319 ~~elk~lV~~aH~~Gi~VilDvV~NH~~~~~~~~~~~~~~~~~~~~yy~~~~~g~~~~~~g~~~dln~~~p~vr~~i~d~ 398 (788)
..++..++++||++|++|++=|- ++... .+ . . -..++..|+.+++.
T Consensus 45 ~~~~~~~~~~~~~~~~kvl~sig-g~~~~----------------~~------------~---~--~~~~~~~r~~fi~~ 90 (253)
T cd06545 45 RSELNSVVNAAHAHNVKILISLA-GGSPP----------------EF------------T---A--ALNDPAKRKALVDK 90 (253)
T ss_pred HHHHHHHHHHHHhCCCEEEEEEc-CCCCC----------------cc------------h---h--hhcCHHHHHHHHHH
Confidence 45788999999999999998542 21100 00 0 0 23467889999999
Q ss_pred HHHHHHhcCccEEEEecc
Q 003901 399 LRYWVTEMHVDGFRFDLA 416 (788)
Q Consensus 399 l~~W~~e~gVDGFR~D~a 416 (788)
+..+++++|+||+-+|--
T Consensus 91 lv~~~~~~~~DGIdiDwE 108 (253)
T cd06545 91 IINYVVSYNLDGIDVDLE 108 (253)
T ss_pred HHHHHHHhCCCceeEEee
Confidence 999999999999999863
No 125
>cd06570 GH20_chitobiase-like_1 A functionally uncharacterized subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the chitobiase of Serratia marcescens, a beta-N-1,4-acetylhexosaminidase that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This subgroup lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=83.12 E-value=8.9 Score=41.63 Aligned_cols=121 Identities=13% Similarity=0.068 Sum_probs=72.3
Q ss_pred HHHHHhhhHHHHHcCCCeEEECcccccCccCcccCCCCCCCcccCCCCCC-------CCCCCcHHHHHHHHHHHHHcCCE
Q 003901 263 YLGVVEKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYNYSSAGIR-------NCGHDAINEFKLLVREAHKRGIE 335 (788)
Q Consensus 263 ~~gl~~~L~yLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~wgY~~~~~~-------~~~~G~~~elk~lV~~aH~~Gi~ 335 (788)
...|.+.|+.++.+++|.++|-= .+.. .|++.+..+. ...+=|.+|+|++|+-|.++||+
T Consensus 17 ~~~ik~~Id~ma~~KlN~lh~Hl-tDd~------------~~rle~~~~P~lt~~g~~~~~yT~~di~elv~yA~~rgI~ 83 (311)
T cd06570 17 VAVIKRQLDAMASVKLNVFHWHL-TDDQ------------GFRIESKKYPKLQQKASDGLYYTQEQIREVVAYARDRGIR 83 (311)
T ss_pred HHHHHHHHHHHHHhCCeEEEEEE-ecCC------------CceeecCCCccccccCCCCCccCHHHHHHHHHHHHHcCCE
Confidence 56677778999999999887521 0100 0222111110 01123799999999999999999
Q ss_pred EEEEee-eccccCCCCCCCccccCCCCCccceeeCCCCCcccCCCC-ccccCCCCHHHHHHHHHHHHHHHHhc
Q 003901 336 VVMDVV-FNHTVEGNDKGPILSFRGVDNSVYYMLAPKGEFYNYSGC-GNTFNCNHPVVRQFIVDCLRYWVTEM 406 (788)
Q Consensus 336 VilDvV-~NH~~~~~~~~~~~~~~~~~~~~yy~~~~~g~~~~~~g~-~~dln~~~p~vr~~i~d~l~~W~~e~ 406 (788)
||-.+- +.|+..--...|.+.... . ........+. .+.||-.+|++.+++.+.+.-++.-|
T Consensus 84 vIPEId~PGH~~a~~~~ypel~~~~---~-------~~~~~~~~~~~~~~l~~~~p~t~~f~~~l~~E~~~lF 146 (311)
T cd06570 84 VVPEIDVPGHASAIAVAYPELASGP---G-------PYVIERGWGVFEPLLDPTNEETYTFLDNLFGEMAELF 146 (311)
T ss_pred EEEeecCccchHHHHHhCHHhccCC---C-------ccccccccccCCCccCCCChhHHHHHHHHHHHHHHhC
Confidence 999984 789853111111111000 0 0001111111 24689999999999999999998544
No 126
>PF00728 Glyco_hydro_20: Glycosyl hydrolase family 20, catalytic domain; InterPro: IPR015883 Glycoside hydrolase family 20 GH20 from CAZY comprises enzymes with several known activities; beta-hexosaminidase (3.2.1.52 from EC); lacto-N-biosidase (3.2.1.140 from EC). Carbonyl oxygen of the C-2 acetamido group of the substrate acts as the catalytic nucleophile/base in this family of enzymes. In the brain and other tissues, beta-hexosaminidase A degrades GM2 gangliosides; specifically, the enzyme hydrolyses terminal non-reducing N-acetyl-D-hexosamine residues in N-acetyl-beta-D-hexosaminides. There are 3 forms of beta-hexosaminidase: hexosaminidase A is a trimer, with one alpha, one beta-A and one beta-B chain; hexosaminidase B is a tetramer of two beta-A and two beta-B chains; and hexosaminidase S is a homodimer of alpha chains. The two beta chains are derived from the cleavage of a precursor. Mutations in the beta-chain lead to Sandhoff disease, a lysosomal storage disorder characterised by accumulation of GM2 ganglioside [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 3RPM_A 1C7T_A 1QBA_A 1QBB_A 1C7S_A 3RCN_A 2YL8_A 2YL6_A 2YLL_A 2YL5_C ....
Probab=81.08 E-value=3.5 Score=45.45 Aligned_cols=140 Identities=16% Similarity=0.158 Sum_probs=72.4
Q ss_pred CHHHHHhhhHHHHHcCCCeEEECcccccCccCcc-cCCCCCCC-cccCCCCCCCCCCCcHHHHHHHHHHHHHcCCEEEEE
Q 003901 262 TYLGVVEKLDHLKDLGINCLELMPCHEFNELEYF-SYNSVLGD-YNYSSAGIRNCGHDAINEFKLLVREAHKRGIEVVMD 339 (788)
Q Consensus 262 ~~~gl~~~L~yLk~LGvt~I~L~Pi~~~~~~~~~-~~~~~~~~-wgY~~~~~~~~~~G~~~elk~lV~~aH~~Gi~VilD 339 (788)
+...|.+.|+.++.+++|.++|=-- +..+-... ...+.... ..|.... . .++=|.+|+|+||+.|+++||+||-.
T Consensus 16 ~~~~ik~~id~ma~~k~N~lhlhl~-D~~~~~~~~~~~p~l~~~ga~~~~~-~-~~~yT~~di~~lv~yA~~~gI~VIPe 92 (351)
T PF00728_consen 16 SVDTIKRLIDQMAYYKLNVLHLHLS-DDQGFRLESKSYPELTEKGAYRPSD-A-GGYYTKEDIRELVAYAKERGIEVIPE 92 (351)
T ss_dssp -HHHHHHHHHHHHHTT-SEEEEEEE-SSTCB-BEBSTSTHHHHTTTESTTC-T-ESEBEHHHHHHHHHHHHHTT-EEEEE
T ss_pred CHHHHHHHHHHHHHcCCcEEEEEEe-cCCCCccccCCCccccccCcccccc-c-cccCCHHHHHHHHHHHHHcCCceeee
Confidence 4667778889999999999986321 11000000 00000000 0111100 0 00237899999999999999999999
Q ss_pred e-eeccccCCCCCCCccccCCCCCccceeeCCCCCcccCCC---CccccCCCCHHHHHHHHHHHHHHHHhcCccEEE
Q 003901 340 V-VFNHTVEGNDKGPILSFRGVDNSVYYMLAPKGEFYNYSG---CGNTFNCNHPVVRQFIVDCLRYWVTEMHVDGFR 412 (788)
Q Consensus 340 v-V~NH~~~~~~~~~~~~~~~~~~~~yy~~~~~g~~~~~~g---~~~dln~~~p~vr~~i~d~l~~W~~e~gVDGFR 412 (788)
+ ++.|+..--...|.+... . ...+..+..... ....||..+|.+.+++.+.+...++-+.-.-|.
T Consensus 93 id~PGH~~~~l~~~p~~~~~-----~---~~~~~~~~~~~~~~~~~~~l~~~~~~t~~~~~~l~~e~~~~f~~~~iH 161 (351)
T PF00728_consen 93 IDTPGHAEAWLKAYPELGCS-----A---WPEDKSWPNSTCWYPDNGVLDPSNPETYEFLKDLLDEVADLFPSKYIH 161 (351)
T ss_dssp EEESSS-HHHHHHHHHHCCC-----H---TTCSSSCEEEETTSEEEEEE-TTSHHHHHHHHHHHHHHHHHHTSSEEE
T ss_pred ccCchHHHHHHHhCchhhcc-----c---cccccccccccccCCCcccCCCCcHHHHHHHHHHHHHHHhhCCCCeEE
Confidence 9 478986421000100000 0 000011111111 113689999999999999999999766733333
No 127
>PLN03059 beta-galactosidase; Provisional
Probab=80.58 E-value=2.7 Score=50.93 Aligned_cols=60 Identities=10% Similarity=0.115 Sum_probs=41.2
Q ss_pred HHHHhhhHHHHHcCCCeEEECcccccCccCcccCCCCCCCcccCCCCCCCCCCCcHHHHHHHHHHHHHcCCEEEEEe
Q 003901 264 LGVVEKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYNYSSAGIRNCGHDAINEFKLLVREAHKRGIEVVMDV 340 (788)
Q Consensus 264 ~gl~~~L~yLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~wgY~~~~~~~~~~G~~~elk~lV~~aH~~Gi~VilDv 340 (788)
.-..++|..+|++|+|+|..==.+. +....--.-.|.+..||.+|++.|++.||.||+=.
T Consensus 59 ~~W~d~L~k~Ka~GlNtV~tYV~Wn-----------------~HEp~~G~~dF~G~~DL~~Fl~la~e~GLyvilRp 118 (840)
T PLN03059 59 EMWPDLIQKAKDGGLDVIQTYVFWN-----------------GHEPSPGNYYFEDRYDLVKFIKVVQAAGLYVHLRI 118 (840)
T ss_pred HHHHHHHHHHHHcCCCeEEEEeccc-----------------ccCCCCCeeeccchHHHHHHHHHHHHcCCEEEecC
Confidence 3456788999999999998422222 11100000124568999999999999999999864
No 128
>PF14883 GHL13: Hypothetical glycosyl hydrolase family 13
Probab=79.96 E-value=26 Score=37.10 Aligned_cols=119 Identities=16% Similarity=0.099 Sum_probs=67.9
Q ss_pred hhhHHHHHcCCCeEEECcccccCccCcccCCCCCCCcccCCCCCCCCCCCcHHHHHHHHH-HHH-HcCCEEEEEeeeccc
Q 003901 268 EKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYNYSSAGIRNCGHDAINEFKLLVR-EAH-KRGIEVVMDVVFNHT 345 (788)
Q Consensus 268 ~~L~yLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~wgY~~~~~~~~~~G~~~elk~lV~-~aH-~~Gi~VilDvV~NH~ 345 (788)
.-|+.|++||+|+|+|-++.+..+.+... --|- .+.+.--.+||-.=|. .++ +.|++|+.-+-.=-.
T Consensus 21 ~l~~ri~~~~~~tV~Lqaf~d~~gdg~~~-------~~YF----pnr~lpvraDlf~rvawql~tr~~v~VyAWMPvlaf 89 (294)
T PF14883_consen 21 KLIQRIKDMGINTVYLQAFADPDGDGNAD-------AVYF----PNRHLPVRADLFNRVAWQLRTRAGVKVYAWMPVLAF 89 (294)
T ss_pred HHHHHHHHcCCCEEEEEeeeCCCCCCcee-------eEEc----CCCCCchHHHHHHHHHHHHhhhhCCEEEEeeehhhc
Confidence 34689999999999999987654322110 0122 2333444555544443 454 789999887653111
Q ss_pred c-CCCCCCCccccCCCCCccceeeCCCCCcccCCCCccccCCCCHHHHHHHHHHHHHHHHhcCccEEEE
Q 003901 346 V-EGNDKGPILSFRGVDNSVYYMLAPKGEFYNYSGCGNTFNCNHPVVRQFIVDCLRYWVTEMHVDGFRF 413 (788)
Q Consensus 346 ~-~~~~~~~~~~~~~~~~~~yy~~~~~g~~~~~~g~~~dln~~~p~vr~~i~d~l~~W~~e~gVDGFR~ 413 (788)
. .................. ...|.--+|++|+.|.+...-....-.+||+=|
T Consensus 90 ~lp~~~~~~~~~~~~~~~~~----------------y~RLSPf~p~~r~~I~~IYeDLA~y~~fdGILF 142 (294)
T PF14883_consen 90 DLPKVKRADEVRTDRPDPDG----------------YRRLSPFDPEARQIIKEIYEDLARYSKFDGILF 142 (294)
T ss_pred cCCCcchhhhccccCCCCCC----------------ceecCCCCHHHHHHHHHHHHHHHhhCCCCeEEE
Confidence 0 000000000000001111 124555679999999999999996569999999
No 129
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=78.97 E-value=5.5 Score=41.11 Aligned_cols=54 Identities=24% Similarity=0.391 Sum_probs=39.8
Q ss_pred CcCHHHHHh---h----hHHHHHcCCCeEEECcccccCccCcccCCCCCCCcccCCCCCCCCCCCcHHHHHHHHHHHHHc
Q 003901 260 PGTYLGVVE---K----LDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYNYSSAGIRNCGHDAINEFKLLVREAHKR 332 (788)
Q Consensus 260 ~G~~~gl~~---~----L~yLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~wgY~~~~~~~~~~G~~~elk~lV~~aH~~ 332 (788)
+|||..+.- + |.++|+||+++|+|+-=+- . + ..++..++|+.++++
T Consensus 60 GGtl~E~~~~q~~~~~Yl~~~k~lGf~~IEiS~G~~-------------------~---i-----~~~~~~rlI~~~~~~ 112 (237)
T TIGR03849 60 GGTLFEIAHSKGKFDEYLNECDELGFEAVEISDGSM-------------------E---I-----SLEERCNLIERAKDN 112 (237)
T ss_pred CccHHHHHHHhhhHHHHHHHHHHcCCCEEEEcCCcc-------------------C---C-----CHHHHHHHHHHHHhC
Confidence 577766532 2 4599999999999764211 0 0 378899999999999
Q ss_pred CCEEEEEe
Q 003901 333 GIEVVMDV 340 (788)
Q Consensus 333 Gi~VilDv 340 (788)
|++|+-.+
T Consensus 113 g~~v~~Ev 120 (237)
T TIGR03849 113 GFMVLSEV 120 (237)
T ss_pred CCeEeccc
Confidence 99998554
No 130
>PRK12568 glycogen branching enzyme; Provisional
Probab=78.65 E-value=4.1 Score=49.03 Aligned_cols=76 Identities=18% Similarity=0.177 Sum_probs=49.9
Q ss_pred CCCcEEeCCc-EEEEEEcCCCCEEEEEEEeCCCccCCceeeEEecccccCCCCCEEEEEEcCCCCCceeeEEEcCCcCCC
Q 003901 97 PFGATLRDGG-VNFSIFSSNAVSATLCLITLSDLQENKVTEEIALDSFANKTGDVWHVFLKGDFKDMLYGYKFDGKFSPQ 175 (788)
Q Consensus 97 ~lGa~~~~~~-~~F~vwap~A~~V~L~l~~~~d~~~~~~~~~~~l~~~~~~~~gvW~~~i~~~~~~~~Y~y~~~g~~~~~ 175 (788)
-||.|..+++ +.+|+|.|.|.+|+|+. .. . . ...+|.+. ...|+|...+|.. ..|++++.-.
T Consensus 29 ~lg~h~~~~~~~~~r~~~p~a~~v~~~~-~~-~----~--~~~~~~~~--~~~g~f~~~~~~~---~~y~~~~~~~---- 91 (730)
T PRK12568 29 VLGPHPQADGRRQVRVLAPGAEAMGLID-GR-G----K--LLARMQAS--PIDGVFEGILPAD---GPYRLRIVWP---- 91 (730)
T ss_pred hcCCcCCCCCcEEEEEECCCCcEEEEEe-cC-C----c--cccccEec--CCCCeEEEecCCC---CCEEEEEEeC----
Confidence 5899988888 79999999999999962 11 1 0 11145432 3468999999843 2477776511
Q ss_pred CCcccCCcccccCccccee
Q 003901 176 EGHYFDPTKIVLDPYAKAV 194 (788)
Q Consensus 176 ~g~~~~~~~~~~DPya~~~ 194 (788)
.+ ...+.|||+...
T Consensus 92 ~~-----~~~~~dpy~~~~ 105 (730)
T PRK12568 92 DV-----VQEIEDPYAFAP 105 (730)
T ss_pred Cc-----eEEeeccccccc
Confidence 11 234679999754
No 131
>COG3867 Arabinogalactan endo-1,4-beta-galactosidase [Carbohydrate transport and metabolism]
Probab=75.82 E-value=7.4 Score=40.99 Aligned_cols=59 Identities=27% Similarity=0.455 Sum_probs=36.3
Q ss_pred hhHHHHHcCCCeEEECcccccCccCcccCCCCCCCcccCCCCCCCCCCCcHHHHH---HHHHHHHHcCCEEEEEeeeccc
Q 003901 269 KLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYNYSSAGIRNCGHDAINEFK---LLVREAHKRGIEVVMDVVFNHT 345 (788)
Q Consensus 269 ~L~yLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~wgY~~~~~~~~~~G~~~elk---~lV~~aH~~Gi~VilDvV~NH~ 345 (788)
.|.-||+-|||.|-|-=..+ + |++.+ ++-.|+..|++ ++-++|.++||+|++|+-|...
T Consensus 68 ~~~iLK~~GvNyvRlRvwnd-P---------------~dsng--n~yggGnnD~~k~ieiakRAk~~GmKVl~dFHYSDf 129 (403)
T COG3867 68 ALQILKNHGVNYVRLRVWND-P---------------YDSNG--NGYGGGNNDLKKAIEIAKRAKNLGMKVLLDFHYSDF 129 (403)
T ss_pred HHHHHHHcCcCeEEEEEecC-C---------------ccCCC--CccCCCcchHHHHHHHHHHHHhcCcEEEeeccchhh
Confidence 46899999999987642221 1 11111 11123344444 5567788899999999976543
No 132
>cd06569 GH20_Sm-chitobiase-like The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=71.53 E-value=25 Score=40.23 Aligned_cols=87 Identities=16% Similarity=0.204 Sum_probs=51.9
Q ss_pred cHHHHHHHHHHHHHcCCEEEEEee-eccccCCCC----CCCccccCCCCC--ccceeeCCC--CCcccCCCC-ccccCCC
Q 003901 318 AINEFKLLVREAHKRGIEVVMDVV-FNHTVEGND----KGPILSFRGVDN--SVYYMLAPK--GEFYNYSGC-GNTFNCN 387 (788)
Q Consensus 318 ~~~elk~lV~~aH~~Gi~VilDvV-~NH~~~~~~----~~~~~~~~~~~~--~~yy~~~~~--g~~~~~~g~-~~dln~~ 387 (788)
|.+|+|++|+-|+++||.||-.+- +.|+..--. ..|.+.-.+... ..|-..++. ..+....+. .+.||-.
T Consensus 95 T~~di~eiv~yA~~rgI~VIPEID~PGH~~a~l~a~~~~yp~l~~~g~~~~~~~~~~~d~~~~~~~~~~~~~~~~~L~p~ 174 (445)
T cd06569 95 SRADYIEILKYAKARHIEVIPEIDMPGHARAAIKAMEARYRKLMAAGKPAEAEEYRLSDPADTSQYLSVQFYTDNVINPC 174 (445)
T ss_pred CHHHHHHHHHHHHHcCCEEEEccCCchhHHHHHHhhhccchhhhccCCccccccccccCcccccccccccccccccccCC
Confidence 899999999999999999999984 799863100 011111011000 011111111 111111111 2468889
Q ss_pred CHHHHHHHHHHHHHHHH
Q 003901 388 HPVVRQFIVDCLRYWVT 404 (788)
Q Consensus 388 ~p~vr~~i~d~l~~W~~ 404 (788)
+|.+.+++.+++...++
T Consensus 175 ~~~ty~fl~~vl~Ev~~ 191 (445)
T cd06569 175 MPSTYRFVDKVIDEIAR 191 (445)
T ss_pred chhHHHHHHHHHHHHHH
Confidence 99999999999999884
No 133
>PF07071 DUF1341: Protein of unknown function (DUF1341); InterPro: IPR010763 Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.; PDB: 3NZR_D 3LM7_A 3M0Z_B 3M6Y_A 3N73_A 3MUX_A.
Probab=68.15 E-value=12 Score=37.31 Aligned_cols=44 Identities=23% Similarity=0.495 Sum_probs=31.2
Q ss_pred HHhhhHHHHHcCCCeEEECcccccCccCcccCCCCCCCcccCCCCCCCCCCCcHHHHHHHHHHHHHcCCEE
Q 003901 266 VVEKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYNYSSAGIRNCGHDAINEFKLLVREAHKRGIEV 336 (788)
Q Consensus 266 l~~~L~yLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~wgY~~~~~~~~~~G~~~elk~lV~~aH~~Gi~V 336 (788)
+...+..||+||++.|-++|+- .+-..+||+.+.++|-++||.+
T Consensus 137 vetAiaml~dmG~~SiKffPm~---------------------------Gl~~leE~~avAkA~a~~g~~l 180 (218)
T PF07071_consen 137 VETAIAMLKDMGGSSIKFFPMG---------------------------GLKHLEELKAVAKACARNGFTL 180 (218)
T ss_dssp HHHHHHHHHHTT--EEEE---T---------------------------TTTTHHHHHHHHHHHHHCT-EE
T ss_pred HHHHHHHHHHcCCCeeeEeecC---------------------------CcccHHHHHHHHHHHHHcCcee
Confidence 3446799999999999999973 2346899999999999999876
No 134
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=67.37 E-value=38 Score=35.94 Aligned_cols=68 Identities=13% Similarity=0.129 Sum_probs=40.7
Q ss_pred CCCcCHHHHHhhhHHHHHcCCCeEEECcccccCccCcccCCCCCCCcccCCC-CCCCCCCCcHHHHHHHHHHHHHcCCEE
Q 003901 258 EHPGTYLGVVEKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYNYSSA-GIRNCGHDAINEFKLLVREAHKRGIEV 336 (788)
Q Consensus 258 ~~~G~~~gl~~~L~yLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~wgY~~~-~~~~~~~G~~~elk~lV~~aH~~Gi~V 336 (788)
+++-++....+-+|+-+++|+..|.+ + ..|.. |..... ++. .--...++++||+-|+++|++|
T Consensus 26 ~~g~~t~~~k~yIDfAa~~G~eYvlv----D----~GW~~------~~~~~~~d~~--~~~~~~dl~elv~Ya~~KgVgi 89 (273)
T PF10566_consen 26 KHGATTETQKRYIDFAAEMGIEYVLV----D----AGWYG------WEKDDDFDFT--KPIPDFDLPELVDYAKEKGVGI 89 (273)
T ss_dssp -BSSSHHHHHHHHHHHHHTT-SEEEE----B----TTCCG------S--TTT--TT---B-TT--HHHHHHHHHHTT-EE
T ss_pred cCCCCHHHHHHHHHHHHHcCCCEEEe----c----ccccc------cccccccccc--ccCCccCHHHHHHHHHHcCCCE
Confidence 34568999999999999999999987 2 11110 111110 110 0112478999999999999999
Q ss_pred EEEee
Q 003901 337 VMDVV 341 (788)
Q Consensus 337 ilDvV 341 (788)
+|=+.
T Consensus 90 ~lw~~ 94 (273)
T PF10566_consen 90 WLWYH 94 (273)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 87553
No 135
>PF03198 Glyco_hydro_72: Glucanosyltransferase; InterPro: IPR004886 This family is a group of yeast glycolipid proteins anchored to the membrane. It includes Candida albicans (Yeast) pH-regulated protein, which is required for apical growth and plays a role in morphogenesis and Saccharomyces cerevisiae glycolipid anchored surface protein.; PDB: 2W61_A 2W62_A 2W63_A.
Probab=66.39 E-value=6.3 Score=42.22 Aligned_cols=53 Identities=21% Similarity=0.306 Sum_probs=31.3
Q ss_pred HHHHhhhHHHHHcCCCeEEECcccccCccCcccCCCCCCCcccCCCCCCCCCCCcHHHHHHHHHHHHHcCCEEEEEeeec
Q 003901 264 LGVVEKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYNYSSAGIRNCGHDAINEFKLLVREAHKRGIEVVMDVVFN 343 (788)
Q Consensus 264 ~gl~~~L~yLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~wgY~~~~~~~~~~G~~~elk~lV~~aH~~Gi~VilDvV~N 343 (788)
......+++||+||+|+|-+--|-. . ..-++ ..+++.+.||.||+|+---
T Consensus 53 ~~C~rDi~~l~~LgiNtIRVY~vdp--------------------------~-~nHd~---CM~~~~~aGIYvi~Dl~~p 102 (314)
T PF03198_consen 53 EACKRDIPLLKELGINTIRVYSVDP--------------------------S-KNHDE---CMSAFADAGIYVILDLNTP 102 (314)
T ss_dssp HHHHHHHHHHHHHT-SEEEES---T--------------------------T-S--HH---HHHHHHHTT-EEEEES-BT
T ss_pred HHHHHhHHHHHHcCCCEEEEEEeCC--------------------------C-CCHHH---HHHHHHhCCCEEEEecCCC
Confidence 3445568999999999997433311 1 12233 4445677999999999866
Q ss_pred ccc
Q 003901 344 HTV 346 (788)
Q Consensus 344 H~~ 346 (788)
+.+
T Consensus 103 ~~s 105 (314)
T PF03198_consen 103 NGS 105 (314)
T ss_dssp TBS
T ss_pred Ccc
Confidence 444
No 136
>PF02903 Alpha-amylase_N: Alpha amylase, N-terminal ig-like domain; InterPro: IPR004185 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1J0J_A 1J0H_A 1J0I_A 1J0K_A 1EA9_C 1SMA_A 1GVI_B 1WZK_B 1VFM_B 3A6O_A ....
Probab=65.99 E-value=20 Score=32.92 Aligned_cols=68 Identities=10% Similarity=0.137 Sum_probs=43.7
Q ss_pred EeCCcEEEEEEcC--CCCEEEEEEEeCCCccCCceeeEEeccccc-CCCCCEEEEEEcCCCCCceeeEEEc
Q 003901 102 LRDGGVNFSIFSS--NAVSATLCLITLSDLQENKVTEEIALDSFA-NKTGDVWHVFLKGDFKDMLYGYKFD 169 (788)
Q Consensus 102 ~~~~~~~F~vwap--~A~~V~L~l~~~~d~~~~~~~~~~~l~~~~-~~~~gvW~~~i~~~~~~~~Y~y~~~ 169 (788)
..++.+++||++. ++.+|.|+--++.+..........+|.+.. ...-+.|+++|+.......|.|+|.
T Consensus 18 ~~~~~l~IRLRt~k~Dv~~V~l~~~d~~~~~~~~~~~~~~M~k~~~~~~fDyye~~l~~~~~r~~Y~F~l~ 88 (120)
T PF02903_consen 18 YDGDTLHIRLRTAKNDVEKVFLVYGDPYEEEGKWTYKSVEMEKIASDELFDYYEATLKLPEKRLRYYFELE 88 (120)
T ss_dssp ECTTEEEEEEEEETTT-SEEEEEEEETTSETTCECEEEEEEEEEEEESSEEEEEEEEE-TTSEEEEEEEEE
T ss_pred cCCCEEEEEEEecCCCCCEEEEEECCCccccccceEEEEEeEEEEeCCCeEEEEEEEECCCCeEEEEEEEE
Confidence 3567889999985 778888875454332112233566776532 2344799999987666688889886
No 137
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=65.56 E-value=12 Score=38.89 Aligned_cols=55 Identities=27% Similarity=0.372 Sum_probs=38.8
Q ss_pred CcCHHHHHh-------hhHHHHHcCCCeEEECcccccCccCcccCCCCCCCcccCCCCCCCCCCCcHHHHHHHHHHHHHc
Q 003901 260 PGTYLGVVE-------KLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYNYSSAGIRNCGHDAINEFKLLVREAHKR 332 (788)
Q Consensus 260 ~G~~~gl~~-------~L~yLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~wgY~~~~~~~~~~G~~~elk~lV~~aH~~ 332 (788)
+||+-.+.- -|.++|+|||++|+++==+- . + +.++..++|+.+.++
T Consensus 73 GGtl~E~a~~q~~~~~yl~~~k~lGf~~IEiSdGti-------------------~---l-----~~~~r~~~I~~~~~~ 125 (244)
T PF02679_consen 73 GGTLFEVAYQQGKFDEYLEECKELGFDAIEISDGTI-------------------D---L-----PEEERLRLIRKAKEE 125 (244)
T ss_dssp -HHHHHHHHHTT-HHHHHHHHHHCT-SEEEE--SSS------------------------------HHHHHHHHHHHCCT
T ss_pred CcHHHHHHHhcChHHHHHHHHHHcCCCEEEecCCce-------------------e---C-----CHHHHHHHHHHHHHC
Confidence 678776543 37899999999999754211 0 1 368899999999999
Q ss_pred CCEEEEEee
Q 003901 333 GIEVVMDVV 341 (788)
Q Consensus 333 Gi~VilDvV 341 (788)
|++|+-.|=
T Consensus 126 Gf~v~~EvG 134 (244)
T PF02679_consen 126 GFKVLSEVG 134 (244)
T ss_dssp TSEEEEEES
T ss_pred CCEEeeccc
Confidence 999987764
No 138
>TIGR03356 BGL beta-galactosidase.
Probab=65.03 E-value=13 Score=42.35 Aligned_cols=66 Identities=18% Similarity=0.257 Sum_probs=45.7
Q ss_pred CcCHHHHHhhhHHHHHcCCCeEEECcccccCccCcccCCCCCCCcccCCCCCCCCCCCcHHHHHHHHHHHHHcCCEEEEE
Q 003901 260 PGTYLGVVEKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYNYSSAGIRNCGHDAINEFKLLVREAHKRGIEVVMD 339 (788)
Q Consensus 260 ~G~~~gl~~~L~yLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~wgY~~~~~~~~~~G~~~elk~lV~~aH~~Gi~VilD 339 (788)
...|.-..+.|+-||+||++++-+.=-+.- ..+.+.........+-++++|++|+++||++|++
T Consensus 50 ~d~y~~y~eDi~l~~~~G~~~~R~si~Wsr----------------i~p~g~~~~n~~~~~~y~~~i~~l~~~gi~pivt 113 (427)
T TIGR03356 50 CDHYHRYEEDVALMKELGVDAYRFSIAWPR----------------IFPEGTGPVNPKGLDFYDRLVDELLEAGIEPFVT 113 (427)
T ss_pred ccHHHhHHHHHHHHHHcCCCeEEcccchhh----------------cccCCCCCcCHHHHHHHHHHHHHHHHcCCeeEEe
Confidence 456888889999999999999986432221 1111000001224677999999999999999999
Q ss_pred ee
Q 003901 340 VV 341 (788)
Q Consensus 340 vV 341 (788)
+.
T Consensus 114 L~ 115 (427)
T TIGR03356 114 LY 115 (427)
T ss_pred ec
Confidence 86
No 139
>cd02874 GH18_CFLE_spore_hydrolase Cortical fragment-lytic enzyme (CFLE) is a peptidoglycan hydrolase involved in bacterial endospore germination. CFLE is expressed as an inactive preprotein (called SleB) in the forespore compartment of sporulating cells. SleB translocates across the forespore inner membrane and is deposited as a mature enzyme in the cortex layer of the spore. As part of a sensory mechanism capable of initiating germination, CFLE degrades a spore-specific peptidoglycan constituent called muramic-acid delta-lactam that comprises the outer cortex. CFLE has a C-terminal glycosyl hydrolase family 18 (GH18) catalytic domain as well as two N-terminal LysM peptidoglycan-binding domains. In addition to SleB, this family includes YaaH, YdhD, and YvbX from Bacillus subtilis.
Probab=64.47 E-value=11 Score=40.81 Aligned_cols=66 Identities=23% Similarity=0.340 Sum_probs=44.7
Q ss_pred HHHHHHHHHHcCCEEEEEeeeccccCCCCCCCccccCCCCCccceeeCCCCCcccCCCCccccCCCCHHHHHHHHHHHHH
Q 003901 322 FKLLVREAHKRGIEVVMDVVFNHTVEGNDKGPILSFRGVDNSVYYMLAPKGEFYNYSGCGNTFNCNHPVVRQFIVDCLRY 401 (788)
Q Consensus 322 lk~lV~~aH~~Gi~VilDvV~NH~~~~~~~~~~~~~~~~~~~~yy~~~~~g~~~~~~g~~~dln~~~p~vr~~i~d~l~~ 401 (788)
..++++.||++|++|++=|- +... +. . +.. .+ .--..++..|+.+++++..
T Consensus 47 ~~~~~~~a~~~~~kv~~~i~-~~~~-~~-~---------~~~-~~----------------~~~l~~~~~r~~fi~~iv~ 97 (313)
T cd02874 47 DERLIEAAKRRGVKPLLVIT-NLTN-GN-F---------DSE-LA----------------HAVLSNPEARQRLINNILA 97 (313)
T ss_pred CHHHHHHHHHCCCeEEEEEe-cCCC-CC-C---------CHH-HH----------------HHHhcCHHHHHHHHHHHHH
Confidence 35899999999999996553 2221 10 0 000 00 0113457889999999999
Q ss_pred HHHhcCccEEEEecc
Q 003901 402 WVTEMHVDGFRFDLA 416 (788)
Q Consensus 402 W~~e~gVDGFR~D~a 416 (788)
+++++|.||+-+|--
T Consensus 98 ~l~~~~~DGidiDwE 112 (313)
T cd02874 98 LAKKYGYDGVNIDFE 112 (313)
T ss_pred HHHHhCCCcEEEecc
Confidence 999999999999864
No 140
>PRK05628 coproporphyrinogen III oxidase; Validated
Probab=62.09 E-value=30 Score=38.54 Aligned_cols=62 Identities=19% Similarity=0.178 Sum_probs=44.2
Q ss_pred hhhHHHHHcCCCeEEECcccccCccCcccCCCCCCCcccCCCCCCCCCCCcHHHHHHHHHHHHHcCCE-EEEEeeecccc
Q 003901 268 EKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYNYSSAGIRNCGHDAINEFKLLVREAHKRGIE-VVMDVVFNHTV 346 (788)
Q Consensus 268 ~~L~yLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~wgY~~~~~~~~~~G~~~elk~lV~~aH~~Gi~-VilDvV~NH~~ 346 (788)
++|+.|+++||+.|.|- +..+...... . . .+..+.++..+.++.+++.|+. |.+|++++.-+
T Consensus 109 e~l~~l~~~G~~rvslG-vQS~~~~~L~----~-----------l-~R~~s~~~~~~a~~~l~~~g~~~v~~dli~GlPg 171 (375)
T PRK05628 109 EFFAALRAAGFTRVSLG-MQSAAPHVLA----V-----------L-DRTHTPGRAVAAAREARAAGFEHVNLDLIYGTPG 171 (375)
T ss_pred HHHHHHHHcCCCEEEEe-cccCCHHHHH----H-----------c-CCCCCHHHHHHHHHHHHHcCCCcEEEEEeccCCC
Confidence 57899999999999864 3332210000 0 1 1334788999999999999999 99999998854
No 141
>cd06546 GH18_CTS3_chitinase GH18 domain of CTS3 (chitinase 3), an uncharacterized protein from the human fungal pathogen Coccidioides posadasii. CTS3 has a chitinase-like glycosyl hydrolase family 18 (GH18) domain; and has homologs in bacteria as well as fungi.
Probab=61.14 E-value=34 Score=35.99 Aligned_cols=29 Identities=17% Similarity=0.169 Sum_probs=23.2
Q ss_pred CHHHHHHHHHHHHHHHHhcCccEEEEecc
Q 003901 388 HPVVRQFIVDCLRYWVTEMHVDGFRFDLA 416 (788)
Q Consensus 388 ~p~vr~~i~d~l~~W~~e~gVDGFR~D~a 416 (788)
++.-|+.+++++..+++++++||+=||--
T Consensus 93 ~~~~r~~f~~s~~~~~~~~~~DGiDiDwE 121 (256)
T cd06546 93 DDEDFERYYGQLRDMIRRRGLDGLDLDVE 121 (256)
T ss_pred CHHHHHHHHHHHHHHHHHhCCCceEEeee
Confidence 45566667788888899999999999854
No 142
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=61.04 E-value=14 Score=33.68 Aligned_cols=42 Identities=31% Similarity=0.383 Sum_probs=29.8
Q ss_pred HHHHhhhHHHHHcCCCeEEECcccccCccCcccCCCCCCCcccCCCCCCCCCCCcHHHHHHHHHHHHHcCCEEEE
Q 003901 264 LGVVEKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYNYSSAGIRNCGHDAINEFKLLVREAHKRGIEVVM 338 (788)
Q Consensus 264 ~gl~~~L~yLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~wgY~~~~~~~~~~G~~~elk~lV~~aH~~Gi~Vil 338 (788)
..+.+-++.++++|+.+|||.|= .+-+++++.|+++||+|+-
T Consensus 66 ~~~~~~v~~~~~~g~~~v~~~~g---------------------------------~~~~~~~~~a~~~gi~vig 107 (116)
T PF13380_consen 66 DKVPEIVDEAAALGVKAVWLQPG---------------------------------AESEELIEAAREAGIRVIG 107 (116)
T ss_dssp HHHHHHHHHHHHHT-SEEEE-TT---------------------------------S--HHHHHHHHHTT-EEEE
T ss_pred HHHHHHHHHHHHcCCCEEEEEcc---------------------------------hHHHHHHHHHHHcCCEEEe
Confidence 44566789999999999999883 2246778889999999974
No 143
>KOG3625 consensus Alpha amylase [Carbohydrate transport and metabolism]
Probab=60.87 E-value=1.6e+02 Score=36.14 Aligned_cols=60 Identities=17% Similarity=0.203 Sum_probs=40.1
Q ss_pred CCHHHHHHHHHHHHHHHHhcCccEEEEecccccccCCCccccccccCccccCCccccCCCCCChHHHHHHHcCCccccce
Q 003901 387 NHPVVRQFIVDCLRYWVTEMHVDGFRFDLASIMTRGSSLWDSVNVYGIPIEGDLLTTGTPLRSPPLIDLISNDPILRGVK 466 (788)
Q Consensus 387 ~~p~vr~~i~d~l~~W~~e~gVDGFR~D~a~~l~~~~~~w~~~~~~g~~~~~~~~~~g~~~~~~~~~~~i~~~~~~~~~~ 466 (788)
+.|.++++|.+.+..=.+ =+||+|+|.++..+-. ....++++.++ +.|+.+
T Consensus 509 DsPyLWq~M~kY~e~tAr--iFdG~RlDNcHsTPlH-------------------------VaEylLd~ARk--~nPnlY 559 (1521)
T KOG3625|consen 509 DSPYLWQHMKKYTEITAR--IFDGVRLDNCHSTPLH-------------------------VAEYLLDAARK--LNPNLY 559 (1521)
T ss_pred cChHHHHHHHHHHHHHHH--HhcceeeccCCCCchh-------------------------HHHHHHHHHHh--cCCCeE
Confidence 457888888877665543 5799999998754321 01224554443 567999
Q ss_pred eeeeeccCC
Q 003901 467 LIAEAWDTG 475 (788)
Q Consensus 467 ligE~w~~~ 475 (788)
++||-+..+
T Consensus 560 VvAELFtgS 568 (1521)
T KOG3625|consen 560 VVAELFTGS 568 (1521)
T ss_pred EEeeeccCC
Confidence 999987654
No 144
>cd00598 GH18_chitinase-like The GH18 (glycosyl hydrolase, family 18) type II chitinases hydrolyze chitin, an abundant polymer of beta-1,4-linked N-acetylglucosamine (GlcNAc) which is a major component of the cell wall of fungi and the exoskeleton of arthropods. Chitinases have been identified in viruses, bacteria, fungi, protozoan parasites, insects, and plants. The structure of the GH18 domain is an eight-stranded beta/alpha barrel with a pronounced active-site cleft at the C-terminal end of the beta-barrel. The GH18 family includes chitotriosidase, chitobiase, hevamine, zymocin-alpha, narbonin, SI-CLP (stabilin-1 interacting chitinase-like protein), IDGF (imaginal disc growth factor), CFLE (cortical fragment-lytic enzyme) spore hydrolase, the type III and type V plant chitinases, the endo-beta-N-acetylglucosaminidases, and the chitolectins. The GH85 (glycosyl hydrolase, family 85) ENGases (endo-beta-N-acetylglucosaminidases) are closely related to the GH18 chitinases and are inclu
Probab=58.14 E-value=40 Score=33.75 Aligned_cols=31 Identities=19% Similarity=0.343 Sum_probs=26.1
Q ss_pred CCHHHHHHHHHHHHHHHHhcCccEEEEeccc
Q 003901 387 NHPVVRQFIVDCLRYWVTEMHVDGFRFDLAS 417 (788)
Q Consensus 387 ~~p~vr~~i~d~l~~W~~e~gVDGFR~D~a~ 417 (788)
.++..|+.+++++..+++++++||+-+|.-.
T Consensus 84 ~~~~~~~~f~~~~~~~v~~~~~DGidiD~E~ 114 (210)
T cd00598 84 SDPASRAAFANSLVSFLKTYGFDGVDIDWEY 114 (210)
T ss_pred cCHHHHHHHHHHHHHHHHHcCCCceEEeeeC
Confidence 4567788889999999999999999999643
No 145
>KOG0496 consensus Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=57.99 E-value=18 Score=42.44 Aligned_cols=63 Identities=14% Similarity=0.180 Sum_probs=42.5
Q ss_pred HHhhhHHHHHcCCCeEEECcccccCccCcccCCCCCCCcccCCCCCCCCCCCcHHHHHHHHHHHHHcCCEEEEEeeeccc
Q 003901 266 VVEKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYNYSSAGIRNCGHDAINEFKLLVREAHKRGIEVVMDVVFNHT 345 (788)
Q Consensus 266 l~~~L~yLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~wgY~~~~~~~~~~G~~~elk~lV~~aH~~Gi~VilDvV~NH~ 345 (788)
..+.|..+|++|+++|+--=.+.. +.... + .| .|...-||.+||+.+|+.|+-|||=+=+==+
T Consensus 51 W~~~i~k~k~~Gln~IqtYVfWn~---Hep~~-g-----~y--------~FsG~~DlvkFikl~~~~GLyv~LRiGPyIc 113 (649)
T KOG0496|consen 51 WPDLIKKAKAGGLNVIQTYVFWNL---HEPSP-G-----KY--------DFSGRYDLVKFIKLIHKAGLYVILRIGPYIC 113 (649)
T ss_pred hHHHHHHHHhcCCceeeeeeeccc---ccCCC-C-----cc--------cccchhHHHHHHHHHHHCCeEEEecCCCeEE
Confidence 455678899999999984322221 10000 0 11 3667889999999999999999997654333
No 146
>TIGR01211 ELP3 histone acetyltransferase, ELP3 family. The Saccharomyces cerevisiae member YPL086C has been characterized in vitro as an N-terminal acetyltransferase for all four core histones. It is a component of the RNA polymerase II holoenzyme, designated Elp3p for Elongator Protein 3. Members of this family are found in eukaryotes and archaea. These proteins are part of the larger set of GNAT acetyltransferases.
Probab=57.38 E-value=56 Score=38.15 Aligned_cols=62 Identities=16% Similarity=0.168 Sum_probs=44.1
Q ss_pred hhhHHHHHcCCCeEEECcccccCccCcccCCCCCCCcccCCCCCCCCCCCcHHHHHHHHHHHHHcCCEEEEEeeecccc
Q 003901 268 EKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYNYSSAGIRNCGHDAINEFKLLVREAHKRGIEVVMDVVFNHTV 346 (788)
Q Consensus 268 ~~L~yLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~wgY~~~~~~~~~~G~~~elk~lV~~aH~~Gi~VilDvV~NH~~ 346 (788)
++|+.|+++|+|.|+|-. ..+...- ...++ +--+.++..+.++.+++.|++|.+|+.++--+
T Consensus 207 e~L~~L~~~G~~rVslGV-QS~~d~V---------------L~~in-Rght~~~v~~Ai~~lr~~G~~v~~~LM~GLPg 268 (522)
T TIGR01211 207 EHIDRMLKLGATRVELGV-QTIYNDI---------------LERTK-RGHTVRDVVEATRLLRDAGLKVVYHIMPGLPG 268 (522)
T ss_pred HHHHHHHHcCCCEEEEEC-ccCCHHH---------------HHHhC-CCCCHHHHHHHHHHHHHcCCeEEEEeecCCCC
Confidence 679999999999999754 2211000 00011 33478999999999999999999999987643
No 147
>TIGR03581 EF_0839 conserved hypothetical protein EF_0839/AHA_3917. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.
Probab=55.63 E-value=21 Score=36.11 Aligned_cols=43 Identities=21% Similarity=0.464 Sum_probs=33.7
Q ss_pred HHhhhHHHHHcCCCeEEECcccccCccCcccCCCCCCCcccCCCCCCCCCCCcHHHHHHHHHHHHHcCCE
Q 003901 266 VVEKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYNYSSAGIRNCGHDAINEFKLLVREAHKRGIE 335 (788)
Q Consensus 266 l~~~L~yLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~wgY~~~~~~~~~~G~~~elk~lV~~aH~~Gi~ 335 (788)
+...+..||+||.+.|-++|+- .+-..+||+++.++|-++|+.
T Consensus 137 vetAiaml~dmG~~SiKffPM~---------------------------Gl~~leE~~avA~aca~~g~~ 179 (236)
T TIGR03581 137 IETAIAMLKDMGGSSVKFFPMG---------------------------GLKHLEEYAAVAKACAKHGFY 179 (236)
T ss_pred HHHHHHHHHHcCCCeeeEeecC---------------------------CcccHHHHHHHHHHHHHcCCc
Confidence 3456899999999999999873 234578888888888888775
No 148
>COG2730 BglC Endoglucanase [Carbohydrate transport and metabolism]
Probab=55.01 E-value=20 Score=40.58 Aligned_cols=60 Identities=20% Similarity=0.209 Sum_probs=37.5
Q ss_pred HhhhHHHHHcCCCeEEECcccccC-ccCcccCCCCCCCcccCCCCCCCCCCCcHHHHHHHHHHHHHcCCEEEEEe
Q 003901 267 VEKLDHLKDLGINCLELMPCHEFN-ELEYFSYNSVLGDYNYSSAGIRNCGHDAINEFKLLVREAHKRGIEVVMDV 340 (788)
Q Consensus 267 ~~~L~yLk~LGvt~I~L~Pi~~~~-~~~~~~~~~~~~~wgY~~~~~~~~~~G~~~elk~lV~~aH~~Gi~VilDv 340 (788)
.+.+.++|+.|+|+|-|.=.+..- ... + ..+++. ......=+.+.|+.|.++||+|++|+
T Consensus 76 ~~~~~~ik~~G~n~VRiPi~~~~~~~~~-----------~--~~p~~~-~~~~~~~ld~~I~~a~~~gi~V~iD~ 136 (407)
T COG2730 76 EEDFDQIKSAGFNAVRIPIGYWALQATD-----------G--DNPYLI-GLTQLKILDEAINWAKKLGIYVLIDL 136 (407)
T ss_pred hhHHHHHHHcCCcEEEcccchhhhhccC-----------C--CCCCee-cchHHHHHHHHHHHHHhcCeeEEEEe
Confidence 556899999999999964332321 000 0 011110 12233356777999999999999997
No 149
>PRK10076 pyruvate formate lyase II activase; Provisional
Probab=54.44 E-value=41 Score=34.36 Aligned_cols=67 Identities=22% Similarity=0.364 Sum_probs=43.6
Q ss_pred HHHHhhhHHHHHcCCCeEEECcccccCccCcccCCCCCCCcccCCCCCCCCCCCcHHHHHHHHHHHHHcCCEEEE
Q 003901 264 LGVVEKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYNYSSAGIRNCGHDAINEFKLLVREAHKRGIEVVM 338 (788)
Q Consensus 264 ~gl~~~L~yLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~wgY~~~~~~~~~~G~~~elk~lV~~aH~~Gi~Vil 338 (788)
..+.+-.+.|+++|+..|+|+|.+......+..-+ ..|.-.+ .+.-+.++++++.+.+.++|+.|++
T Consensus 145 e~i~~ia~~l~~l~~~~~~llpyh~~g~~Ky~~lg-----~~y~~~~---~~~~~~~~l~~~~~~~~~~gl~~~i 211 (213)
T PRK10076 145 ENMQQALDVLIPLGIKQIHLLPFHQYGEPKYRLLG-----KTWSMKE---VPAPSSADVATMREMAERAGFQVTV 211 (213)
T ss_pred HHHHHHHHHHHHcCCceEEEecCCccchhHHHHcC-----CcCccCC---CCCcCHHHHHHHHHHHHHcCCeEEe
Confidence 44555557888899999999999886532211000 0122111 1223688999999999999999964
No 150
>COG1306 Uncharacterized conserved protein [Function unknown]
Probab=51.54 E-value=69 Score=34.04 Aligned_cols=140 Identities=16% Similarity=0.251 Sum_probs=75.0
Q ss_pred HHHHhhhHHHHHcCCCeEEECcccccCccCcccCCCCCCCcccCCCCCCCCCCC---cHHHHHHHHHHHHHcCCEEEEEe
Q 003901 264 LGVVEKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYNYSSAGIRNCGHD---AINEFKLLVREAHKRGIEVVMDV 340 (788)
Q Consensus 264 ~gl~~~L~yLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~wgY~~~~~~~~~~G---~~~elk~lV~~aH~~Gi~VilDv 340 (788)
..+.+.+..||+-|+|++- .++-.. ++.-.|.+.+.+....+ ...|++.+|++|+++||.+|.-+
T Consensus 77 k~~de~fk~ikdn~~Na~V----iD~Kdd--------~G~lty~s~d~~~~~~~sv~~f~Di~~~iKkaKe~giY~IARi 144 (400)
T COG1306 77 KRLDELFKLIKDNNINAFV----IDVKDD--------YGELTYPSSDEINKYTKSVNKFKDIEPVIKKAKENGIYAIARI 144 (400)
T ss_pred hHHHHHHHHHHhCCCCEEE----EEecCC--------CccEeccccchhhhhhhccccccccHHHHHHHHhcCeEEEEEE
Confidence 4455667999999999984 343211 00013333332111111 25678999999999999999998
Q ss_pred eecc-ccCCCCCCC--ccccCCCCCccceeeCCCCCcccCCCCccccCCCCHHHHHHHHHHHHHHHHhcCccEEEEeccc
Q 003901 341 VFNH-TVEGNDKGP--ILSFRGVDNSVYYMLAPKGEFYNYSGCGNTFNCNHPVVRQFIVDCLRYWVTEMHVDGFRFDLAS 417 (788)
Q Consensus 341 V~NH-~~~~~~~~~--~~~~~~~~~~~yy~~~~~g~~~~~~g~~~dln~~~p~vr~~i~d~l~~W~~e~gVDGFR~D~a~ 417 (788)
|.=. +.-- .+.+ ..-+.+ +..|-.... |.........-=.+--++.+++|=+.+.+.-+ ++|+|-+.||-+.
T Consensus 145 VvFKD~~l~-~~n~fk~av~~~--gKpw~~~~n-gaLrKe~~~ehWVd~y~~~~WeYNvtIAKEa~-~fGfdEiQFDYIR 219 (400)
T COG1306 145 VVFKDTILA-KENPFKIAVYKD--GKPWKAFTN-GALRKESDGEHWVDAYDKNLWEYNVTIAKEAA-KFGFDEIQFDYIR 219 (400)
T ss_pred EEeeeeeEE-eecCceEEEEcC--CCcchhhhc-ccccccccceeeecccchhhhhhhHHHHHHHH-HcCccceeeeEEE
Confidence 7422 2100 0000 000000 011100000 10000000000134456889999999999888 8999999999776
Q ss_pred ccc
Q 003901 418 IMT 420 (788)
Q Consensus 418 ~l~ 420 (788)
.-.
T Consensus 220 FP~ 222 (400)
T COG1306 220 FPA 222 (400)
T ss_pred ccC
Confidence 543
No 151
>PRK15452 putative protease; Provisional
Probab=51.35 E-value=1.1e+02 Score=35.07 Aligned_cols=26 Identities=27% Similarity=0.326 Sum_probs=21.2
Q ss_pred cHHHHHHHHHHHHHcCCEEEEEeeeccc
Q 003901 318 AINEFKLLVREAHKRGIEVVMDVVFNHT 345 (788)
Q Consensus 318 ~~~elk~lV~~aH~~Gi~VilDvV~NH~ 345 (788)
+.+||++.|+.||++|++|.+ .+|..
T Consensus 44 ~~edl~eav~~ah~~g~kvyv--t~n~i 69 (443)
T PRK15452 44 NHENLALGINEAHALGKKFYV--VVNIA 69 (443)
T ss_pred CHHHHHHHHHHHHHcCCEEEE--EecCc
Confidence 468999999999999999976 44543
No 152
>PRK14705 glycogen branching enzyme; Provisional
Probab=51.03 E-value=32 Score=44.08 Aligned_cols=77 Identities=17% Similarity=0.201 Sum_probs=49.3
Q ss_pred CCCcEEeCCcE-EEEEEcCCCCEEEEEEEeCCCccCCceeeEEecccccCCCCCEEEEEEcCC--CCCceeeEEEcCCcC
Q 003901 97 PFGATLRDGGV-NFSIFSSNAVSATLCLITLSDLQENKVTEEIALDSFANKTGDVWHVFLKGD--FKDMLYGYKFDGKFS 173 (788)
Q Consensus 97 ~lGa~~~~~~~-~F~vwap~A~~V~L~l~~~~d~~~~~~~~~~~l~~~~~~~~gvW~~~i~~~--~~~~~Y~y~~~g~~~ 173 (788)
-||.|..++++ .+|+|-|.|.+|+|+.- + ...+|.. ...|+|...+|.. .....|.+++.-.
T Consensus 522 ~lg~h~~~~~~~~~r~~~p~a~~v~~~~~--~--------~~~~~~~---~~~g~~~~~~~~~~~~~~~~y~~~~~~~-- 586 (1224)
T PRK14705 522 VLGAHLDDHGHVTVRTVKHLAKAVSVVTA--A--------GRVPMTH---EAHGVWAAVLEPLQAGHVPDYRLEVTYD-- 586 (1224)
T ss_pred hcCCcCCCCceEEEEEECCCCeEEEEEeC--C--------Cceeeee---CCCCEEEEeccccccCCCCCeEEEEEeC--
Confidence 58999888884 79999999999999621 1 1124532 3459999999842 1223487777511
Q ss_pred CCCCcccCCcccccCccccee
Q 003901 174 PQEGHYFDPTKIVLDPYAKAV 194 (788)
Q Consensus 174 ~~~g~~~~~~~~~~DPya~~~ 194 (788)
.+. ...+.|||+...
T Consensus 587 --~~~----~~~~~d~y~~~~ 601 (1224)
T PRK14705 587 --GAE----PVTIDDPYHYLP 601 (1224)
T ss_pred --Ccc----ceEeccccccCC
Confidence 111 124679998653
No 153
>PF01120 Alpha_L_fucos: Alpha-L-fucosidase; InterPro: IPR000933 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Family 29 (GH29 from CAZY) encompasses alpha-L-fucosidases (3.2.1.51 from EC) [], which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Alpha-L-fucosidase is responsible for hydrolysing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Fucosylated glycoconjugates are involved in numerous biological events, making alpha-l-fucosidases, the enzymes responsible for their processing, critically important. Deficiency in alpha-l-fucosidase activity is associated with fucosidosis, a lysosomal storage disorder characterised by rapid neurodegeneration, resulting in severe mental and motor deterioration []. The enzyme is a hexamer and displays a two-domain fold, composed of a catalytic (beta/alpha)(8)-like domain and a C-terminal beta-sandwich domain []. Drosophila melanogaster spermatozoa contains an alpha-l-fucosidase that might be involved in fertilisation by interacting with alpha-l-fucose residues on the micropyle of the eggshell []. In human sperm, membrane-associated alpha-l-fucosidase is stable for extended periods of time, which is made possible by membrane domains and compartmentalisation. These help preserve protein integrity []. ; GO: 0004560 alpha-L-fucosidase activity, 0005975 carbohydrate metabolic process; PDB: 3EYP_B 2ZX6_A 2ZWY_B 2ZX8_B 2WSP_A 2ZXA_A 2ZWZ_B 1ODU_B 1HL9_A 2ZX5_B ....
Probab=50.16 E-value=85 Score=34.62 Aligned_cols=122 Identities=18% Similarity=0.185 Sum_probs=62.0
Q ss_pred HhhhHHHHHcCCCeEEECcccccCccCcccCCCCCCCcccCCCCCCCCCCCcHHHHHHHHHHHHHcCCEEEEEeeecccc
Q 003901 267 VEKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYNYSSAGIRNCGHDAINEFKLLVREAHKRGIEVVMDVVFNHTV 346 (788)
Q Consensus 267 ~~~L~yLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~wgY~~~~~~~~~~G~~~elk~lV~~aH~~Gi~VilDvV~NH~~ 346 (788)
.+-+.-+|++|...|-|+--+.-. ---|.+ .+ -.|++. +.+ +..+=+++|+++|+++||++.+ |-|..
T Consensus 94 dqW~~~ak~aGakY~VlTakHHDG-F~LW~S--~~--t~~~v~---~~~-~krDiv~El~~A~rk~Glk~G~---Y~S~~ 161 (346)
T PF01120_consen 94 DQWAKLAKDAGAKYVVLTAKHHDG-FCLWPS--KY--TDYNVV---NSG-PKRDIVGELADACRKYGLKFGL---YYSPW 161 (346)
T ss_dssp HHHHHHHHHTT-SEEEEEEE-TT---BSS----TT---SSBGG---GGG-GTS-HHHHHHHHHHHTT-EEEE---EEESS
T ss_pred HHHHHHHHHcCCCEEEeehhhcCc-cccCCC--CC--Cccccc---CCC-CCCCHHHHHHHHHHHcCCeEEE---Eecch
Confidence 344688999999999877655411 000100 11 123332 212 2356799999999999999988 33322
Q ss_pred CCCCCCCccccCCCCCccceeeCCCCCcccCCCCccccCCC-CHHHHHHHHHHHHHHHHhcCccEEEEeccc
Q 003901 347 EGNDKGPILSFRGVDNSVYYMLAPKGEFYNYSGCGNTFNCN-HPVVRQFIVDCLRYWVTEMHVDGFRFDLAS 417 (788)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~yy~~~~~g~~~~~~g~~~dln~~-~p~vr~~i~d~l~~W~~e~gVDGFR~D~a~ 417 (788)
.-+. + .|- ....+. ..+ ..+..-. ...+.+++..-++-.++.|.+|.+=||...
T Consensus 162 dw~~--~----------~~~-~~~~~~---~~~-~~~~~~~~~~~~~~~~~~ql~EL~~~Y~~d~lWfDg~~ 216 (346)
T PF01120_consen 162 DWHH--P----------DYP-PDEEGD---ENG-PADGPGNWQRYYNEYWLAQLRELLTRYKPDILWFDGGW 216 (346)
T ss_dssp SCCC--T----------TTT-SSCHCH---HCC---HCCHHHHHHHHHHHHHHHHHHHHCSTESEEEEESTT
T ss_pred HhcC--c----------ccC-CCccCC---ccc-ccccchhhHhHhhhhhHHHHHHHHhCCCcceEEecCCC
Confidence 1110 0 000 000000 000 0000000 112455788889999999999999999764
No 154
>smart00518 AP2Ec AP endonuclease family 2. These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites
Probab=50.08 E-value=1.5e+02 Score=31.13 Aligned_cols=52 Identities=10% Similarity=0.121 Sum_probs=36.0
Q ss_pred HHhhhHHHHHcCCCeEEECcccccCccCcccCCCCCCCcccCCCCCCCCCCCcHHHHHHHHHHHHHcCCEEEE
Q 003901 266 VVEKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYNYSSAGIRNCGHDAINEFKLLVREAHKRGIEVVM 338 (788)
Q Consensus 266 l~~~L~yLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~wgY~~~~~~~~~~G~~~elk~lV~~aH~~Gi~Vil 338 (788)
+.+.++++.++|++.|+|...-... | . ...-+.++++++-+.+.+.||+|.+
T Consensus 12 ~~~~~~~~~~~G~~~vel~~~~~~~-------------~--~------~~~~~~~~~~~l~~~~~~~gl~ls~ 63 (273)
T smart00518 12 LYKAFIEAVDIGARSFQLFLGNPRS-------------W--K------GVRLSEETAEKFKEALKENNIDVSV 63 (273)
T ss_pred HhHHHHHHHHcCCCEEEEECCCCCC-------------C--C------CCCCCHHHHHHHHHHHHHcCCCEEE
Confidence 5678899999999999996543210 0 0 0122466788888888899999654
No 155
>TIGR01370 cysRS possible cysteinyl-tRNA synthetase, Methanococcus type. Assignment of this protein family as cysteinyl-tRNA synthetase is controversial, supported by PubMed:11333988 but challenged by PubMed:14679218. Members of this family from Deinococcus radiodurans (bacterial) and Methanococcus jannaschii (archaeal), species lacking a conventional cysteinyl-tRNA synthetase (Cys--tRNA ligase), have been indicated to be a novel form of that enzyme, perhaps distantly related to class I tRNA ligases. The member from Thermotoga maritima is presumed to be a second isozyme of cysteinyl-tRNA synthetase. A number of homologous but more distantly related proteins are annotated as alpha-1,4 polygalactosaminidases.
Probab=49.62 E-value=46 Score=36.14 Aligned_cols=37 Identities=16% Similarity=0.205 Sum_probs=31.8
Q ss_pred cccCCCCHHHHHHHHHHHHHHHHhcCccEEEEeccccc
Q 003901 382 NTFNCNHPVVRQFIVDCLRYWVTEMHVDGFRFDLASIM 419 (788)
Q Consensus 382 ~dln~~~p~vr~~i~d~l~~W~~e~gVDGFR~D~a~~l 419 (788)
-.+++.+|+.+++|.+-+...+ +.|+|||-+|.+...
T Consensus 136 ~~vd~~~~~W~~il~~rl~~l~-~kGfDGvfLD~lDsy 172 (315)
T TIGR01370 136 YDVKYWDPEWKAIAFSYLDRVI-AQGFDGVYLDLIDAF 172 (315)
T ss_pred eeEecccHHHHHHHHHHHHHHH-HcCCCeEeeccchhh
Confidence 3578889999999999887776 899999999988765
No 156
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=49.29 E-value=1.5e+02 Score=31.17 Aligned_cols=54 Identities=20% Similarity=0.250 Sum_probs=36.1
Q ss_pred HHHhhhHHHHHcCCCeEEECcccccCccCcccCCCCCCCcccCCCCCCCCCCCcHHHHHHHHHHHHHcCCEEEE
Q 003901 265 GVVEKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYNYSSAGIRNCGHDAINEFKLLVREAHKRGIEVVM 338 (788)
Q Consensus 265 gl~~~L~yLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~wgY~~~~~~~~~~G~~~elk~lV~~aH~~Gi~Vil 338 (788)
.+.+.++.++++|++.|+|.+... .. . .... .+ +..+++++.+.+.+.||+|..
T Consensus 17 ~~~e~~~~~~~~G~~~iEl~~~~~-~~--------~-----~~~~-----~~-~~~~~~~l~~~l~~~Gl~i~~ 70 (284)
T PRK13210 17 SWEERLVFAKELGFDFVEMSVDES-DE--------R-----LARL-----DW-SKEERLSLVKAIYETGVRIPS 70 (284)
T ss_pred CHHHHHHHHHHcCCCeEEEecCCc-cc--------c-----cccc-----cC-CHHHHHHHHHHHHHcCCCceE
Confidence 467789999999999999964210 00 0 0000 01 356788888899999999863
No 157
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=48.86 E-value=1.1e+02 Score=32.68 Aligned_cols=60 Identities=22% Similarity=0.323 Sum_probs=42.6
Q ss_pred HhhhHHHHHcCCCeEEECcccccCccCcccCCCCCCCcccCCCCCCCCCCCcHHHHHHHHHHHHHcCCEEEEEeeecc
Q 003901 267 VEKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYNYSSAGIRNCGHDAINEFKLLVREAHKRGIEVVMDVVFNH 344 (788)
Q Consensus 267 ~~~L~yLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~wgY~~~~~~~~~~G~~~elk~lV~~aH~~Gi~VilDvV~NH 344 (788)
.+.+..||+.|++.|.+. ++ .+... |.. +. +-.+.++..+.++.+|+.||+|...+++.+
T Consensus 123 ~e~l~~Lk~aG~~~v~i~--~E-~~~~~-----------~~~---i~-~~~s~~~~~~ai~~l~~~Gi~v~~~~i~Gl 182 (296)
T TIGR00433 123 PEQAKRLKDAGLDYYNHN--LD-TSQEF-----------YSN---II-STHTYDDRVDTLENAKKAGLKVCSGGIFGL 182 (296)
T ss_pred HHHHHHHHHcCCCEEEEc--cc-CCHHH-----------Hhh---cc-CCCCHHHHHHHHHHHHHcCCEEEEeEEEeC
Confidence 567899999999999886 33 11110 010 11 124788999999999999999988888765
No 158
>COG0041 PurE Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]
Probab=48.75 E-value=53 Score=31.45 Aligned_cols=52 Identities=15% Similarity=0.242 Sum_probs=39.6
Q ss_pred cCHHHHHhhhHHHHHcCCCeEEECcccccCccCcccCCCCCCCcccCCCCCCCCCCCcHHHHHHHHHHHHHcCCEEEEEe
Q 003901 261 GTYLGVVEKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYNYSSAGIRNCGHDAINEFKLLVREAHKRGIEVVMDV 340 (788)
Q Consensus 261 G~~~gl~~~L~yLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~wgY~~~~~~~~~~G~~~elk~lV~~aH~~Gi~VilDv 340 (788)
-||.-+.+..+-|+++||..--- +-+..-|++.+.++++.++++|++||+=.
T Consensus 13 SD~~~mk~Aa~~L~~fgi~ye~~----------------------------VvSAHRTPe~m~~ya~~a~~~g~~viIAg 64 (162)
T COG0041 13 SDWDTMKKAAEILEEFGVPYEVR----------------------------VVSAHRTPEKMFEYAEEAEERGVKVIIAG 64 (162)
T ss_pred chHHHHHHHHHHHHHcCCCeEEE----------------------------EEeccCCHHHHHHHHHHHHHCCCeEEEec
Confidence 46777788889999999864310 11123489999999999999999999854
No 159
>PRK14508 4-alpha-glucanotransferase; Provisional
Probab=48.31 E-value=23 Score=41.03 Aligned_cols=33 Identities=21% Similarity=0.336 Sum_probs=29.3
Q ss_pred CCCcCHH-HHHhhhHHHHHcCCCeEEECcccccC
Q 003901 258 EHPGTYL-GVVEKLDHLKDLGINCLELMPCHEFN 290 (788)
Q Consensus 258 ~~~G~~~-gl~~~L~yLk~LGvt~I~L~Pi~~~~ 290 (788)
.+.|||. ++.+-++.+++.|++.|+|+|++...
T Consensus 20 ~GiGDfg~dl~~~id~~~~~G~~~~qilPl~~~~ 53 (497)
T PRK14508 20 YGIGDFGKGAYEFIDFLAEAGQSYWQILPLGPTG 53 (497)
T ss_pred CCCcchHHHHHHHHHHHHHcCCCEEEEcCCCCCC
Confidence 3469995 99999999999999999999999854
No 160
>PRK08208 coproporphyrinogen III oxidase; Validated
Probab=47.64 E-value=68 Score=36.54 Aligned_cols=62 Identities=18% Similarity=0.295 Sum_probs=42.2
Q ss_pred hhhHHHHHcCCCeEEECcccccCccCcccCCCCCCCcccCCCCCCCCCCCcHHHHHHHHHHHHHcCCEEE-EEeeecccc
Q 003901 268 EKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYNYSSAGIRNCGHDAINEFKLLVREAHKRGIEVV-MDVVFNHTV 346 (788)
Q Consensus 268 ~~L~yLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~wgY~~~~~~~~~~G~~~elk~lV~~aH~~Gi~Vi-lDvV~NH~~ 346 (788)
+.|..|+++||+.|.|- |..+...... . .. +.-+.++..+.|+.+++.|+.+| +|+.++.-+
T Consensus 142 e~l~~l~~~G~~rvslG-vQS~~~~~L~----~-----------l~-R~~~~~~~~~ai~~l~~~g~~~i~~dlI~GlP~ 204 (430)
T PRK08208 142 EKLALLAARGVNRLSIG-VQSFHDSELH----A-----------LH-RPQKRADVHQALEWIRAAGFPILNIDLIYGIPG 204 (430)
T ss_pred HHHHHHHHcCCCEEEEe-cccCCHHHHH----H-----------hC-CCCCHHHHHHHHHHHHHcCCCeEEEEeecCCCC
Confidence 67899999999999863 3332110000 0 11 12267899999999999999865 999888754
No 161
>KOG2499 consensus Beta-N-acetylhexosaminidase [Carbohydrate transport and metabolism]
Probab=47.51 E-value=71 Score=36.26 Aligned_cols=30 Identities=27% Similarity=0.262 Sum_probs=27.5
Q ss_pred cHHHHHHHHHHHHHcCCEEEEEee-eccccC
Q 003901 318 AINEFKLLVREAHKRGIEVVMDVV-FNHTVE 347 (788)
Q Consensus 318 ~~~elk~lV~~aH~~Gi~VilDvV-~NH~~~ 347 (788)
|.+|.+++|+-|.-|||+||-.+- +.|+++
T Consensus 248 T~eDv~evV~yarlRGIRVlpEfD~PgHt~s 278 (542)
T KOG2499|consen 248 TREDVSEVVEYARLRGIRVLPEFDTPGHTGS 278 (542)
T ss_pred cHHHHHHHHHHHHhccceeeecccCCccccc
Confidence 789999999999999999999984 899975
No 162
>PLN02808 alpha-galactosidase
Probab=47.38 E-value=46 Score=37.16 Aligned_cols=73 Identities=12% Similarity=-0.016 Sum_probs=46.0
Q ss_pred CCcEEEEEEEcCCCCEEEEEEeCCCCcEEEECCCC----CC-C--CeEEEecCCCCCCCCccCCCCchhhhhhhhcCCCC
Q 003901 693 KSRFVAFTLIDSVKGEIYVAFNASHLPVIISLPKR----PG-Y--RWEPLVDTSKPEPFDFLSSDLPAKEIAIKQYAPFL 765 (788)
Q Consensus 693 ~~~vlaf~r~~~~~~~i~Vv~N~~~~~~~v~Lp~~----~g-~--~w~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 765 (788)
+..+-+|.+...++...++++|.++.++++.++.. ++ . +.++|- +..-.+ + ..
T Consensus 307 ~~~~~vW~k~L~~g~~aVal~N~~~~~~~~~~~~~~lgl~~~~~~~vrDlW-----------s~~~~g--~-------~~ 366 (386)
T PLN02808 307 DGDLEVWAGPLSKKRVAVVLWNRGSSRATITARWSDIGLNSSAVVNARDLW-----------AHSTQS--S-------VK 366 (386)
T ss_pred cCCeEEEEEECCCCCEEEEEEECCCCCEEEEEEHHHhCCCCCCceEEEECC-----------CCCccC--c-------cc
Confidence 34677888877766789999999998888776531 11 1 122232 211000 0 01
Q ss_pred CCeeEEeeCCeEEEEEecCC
Q 003901 766 DANLYPMLSYSSIILLLSPD 785 (788)
Q Consensus 766 ~~~~~~v~~~s~~vl~~~~~ 785 (788)
+..+.+|+|.+++||..+++
T Consensus 367 ~~~~~~v~pHg~~~~rlt~~ 386 (386)
T PLN02808 367 GQLSALVESHACKMYVLTPR 386 (386)
T ss_pred ceEEEEECCceEEEEEEeCC
Confidence 23578999999999998864
No 163
>PRK08207 coproporphyrinogen III oxidase; Provisional
Probab=46.92 E-value=89 Score=36.23 Aligned_cols=63 Identities=21% Similarity=0.296 Sum_probs=45.1
Q ss_pred HhhhHHHHHcCCCeEEECcccccCccCcccCCCCCCCcccCCCCCCCCCCCcHHHHHHHHHHHHHcCC-EEEEEeeeccc
Q 003901 267 VEKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYNYSSAGIRNCGHDAINEFKLLVREAHKRGI-EVVMDVVFNHT 345 (788)
Q Consensus 267 ~~~L~yLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~wgY~~~~~~~~~~G~~~elk~lV~~aH~~Gi-~VilDvV~NH~ 345 (788)
.++|..||+.||+.|.|.|=.-.+..- .. + -+-.+.+++.+.++.|++.|+ .|-+|+.+..-
T Consensus 269 ~e~L~~Lk~~Gv~RISIGvQS~~d~vL-------------k~---i-gR~ht~e~v~~ai~~ar~~Gf~~In~DLI~GLP 331 (488)
T PRK08207 269 EEKLEVLKKYGVDRISINPQTMNDETL-------------KA---I-GRHHTVEDIIEKFHLAREMGFDNINMDLIIGLP 331 (488)
T ss_pred HHHHHHHHhcCCCeEEEcCCcCCHHHH-------------HH---h-CCCCCHHHHHHHHHHHHhCCCCeEEEEEEeCCC
Confidence 467899999999999977622110000 00 1 134578999999999999999 78899998775
Q ss_pred c
Q 003901 346 V 346 (788)
Q Consensus 346 ~ 346 (788)
+
T Consensus 332 g 332 (488)
T PRK08207 332 G 332 (488)
T ss_pred C
Confidence 3
No 164
>cd02877 GH18_hevamine_XipI_class_III This conserved domain family includes xylanase inhibitor Xip-I, and the class III plant chitinases such as hevamine, concanavalin B, and PPL2, all of which have a glycosyl hydrolase family 18 (GH18) domain. Hevamine is a class III endochitinase that hydrolyzes the linear polysaccharide chains of chitin and peptidoglycan and is important for defense against pathogenic bacteria and fungi. PPL2 (Parkia platycephala lectin 2) is a class III chitinase from Parkia platycephala seeds that hydrolyzes beta(1-4) glycosidic bonds linking 2-acetoamido-2-deoxy-beta-D-glucopyranose units in chitin.
Probab=45.80 E-value=61 Score=34.61 Aligned_cols=22 Identities=9% Similarity=0.305 Sum_probs=19.2
Q ss_pred cHHHHHHHHHHHHHcCCEEEEE
Q 003901 318 AINEFKLLVREAHKRGIEVVMD 339 (788)
Q Consensus 318 ~~~elk~lV~~aH~~Gi~VilD 339 (788)
.=.+|.+-|+.|+++|+||+|=
T Consensus 57 ~c~~~~~dI~~cq~~G~KVlLS 78 (280)
T cd02877 57 NCPQLGADIKHCQSKGKKVLLS 78 (280)
T ss_pred cchhHHHHHHHHHHCCCEEEEE
Confidence 3468999999999999999984
No 165
>cd06547 GH85_ENGase Endo-beta-N-acetylglucosaminidase (ENGase) hydrolyzes the N-N'-diacetylchitobiosyl core of N-glycosylproteins. The beta-1,4-glycosyl bond located between two N-acetylglucosamine residues is hydrolyzed such that N-acetylglucosamine 1 remains with the protein and N-acetylglucosamine 2 forms the reducing end of the released glycan. ENGase is a key enzyme in the processing of free oligosaccharides in the cytosol of eukaryotes. Oligosaccharides formed in the lumen of the endoplasmic reticulum are transported into the cytosol where they are catabolized by cytosolic ENGases and other enzymes, possibly to maximize the reutilization of the component sugars. ENGases have an eight-stranded alpha/beta barrel topology and are classified as a family 85 glycosyl hydrolase (GH85) domain. The GH85 ENGases are sequence-similar to the family 18 glycosyl hydrolases, also known as GH18 chitinases. An ENGase-like protein is also found in bacteria and is included in this alignment mod
Probab=45.68 E-value=20 Score=39.32 Aligned_cols=66 Identities=17% Similarity=0.215 Sum_probs=39.8
Q ss_pred HHHHHHHHcCCEEEEEeeeccccCCCCCCCccccCCCCCccceeeCCCCCcccCCCCccccCCCCHHHHHHHHHHHHHHH
Q 003901 324 LLVREAHKRGIEVVMDVVFNHTVEGNDKGPILSFRGVDNSVYYMLAPKGEFYNYSGCGNTFNCNHPVVRQFIVDCLRYWV 403 (788)
Q Consensus 324 ~lV~~aH~~Gi~VilDvV~NH~~~~~~~~~~~~~~~~~~~~yy~~~~~g~~~~~~g~~~dln~~~p~vr~~i~d~l~~W~ 403 (788)
..|++||++|++|+-=+.+.... +.. +. ..|=..++..+..+++-|...+
T Consensus 50 ~~idaAHknGV~Vlgti~~e~~~-~~~--------------~~---------------~~lL~~~~~~~~~~a~kLv~la 99 (339)
T cd06547 50 DWINAAHRNGVPVLGTFIFEWTG-QVE--------------WL---------------EDFLKKDEDGSFPVADKLVEVA 99 (339)
T ss_pred HHHHHHHhcCCeEEEEEEecCCC-chH--------------HH---------------HHHhccCcccchHHHHHHHHHH
Confidence 56789999999998866543321 000 00 0000011334455666777778
Q ss_pred HhcCccEEEEeccccc
Q 003901 404 TEMHVDGFRFDLASIM 419 (788)
Q Consensus 404 ~e~gVDGFR~D~a~~l 419 (788)
+.||+||+=+|.-...
T Consensus 100 k~yGfDGw~iN~E~~~ 115 (339)
T cd06547 100 KYYGFDGWLINIETEL 115 (339)
T ss_pred HHhCCCceEeeeeccC
Confidence 8999999999865443
No 166
>PF02446 Glyco_hydro_77: 4-alpha-glucanotransferase; InterPro: IPR003385 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The enzymes in this entry (2.4.1.25 from EC) belong to the glycoside hydrolase family 77 GH77 from CAZY, and transfer a segment of a (1,4)-alpha-D-glucan to a new 4-position in an acceptor, which may be glucose or (1,4)-alpha-D-glucan []. They belong to the disproportionating family of enzymes.; GO: 0004134 4-alpha-glucanotransferase activity, 0005975 carbohydrate metabolic process; PDB: 1TZ7_A 2X1I_A 2OWX_A 2OWW_A 1FP9_A 1CWY_A 1ESW_A 1FP8_A 2OWC_A 1X1N_A.
Probab=45.55 E-value=21 Score=41.50 Aligned_cols=35 Identities=14% Similarity=0.219 Sum_probs=21.4
Q ss_pred CCcCH-HHHHhhhHHHHHcCCCeEEECcccccCccC
Q 003901 259 HPGTY-LGVVEKLDHLKDLGINCLELMPCHEFNELE 293 (788)
Q Consensus 259 ~~G~~-~gl~~~L~yLk~LGvt~I~L~Pi~~~~~~~ 293 (788)
+.||| ..+.+-++.+++.|+..++|.|++......
T Consensus 13 GIGDfg~dl~~~~d~~~~~G~~i~qllpl~pt~~~~ 48 (496)
T PF02446_consen 13 GIGDFGDDLYQFIDWAAEAGQSIWQLLPLNPTGPGN 48 (496)
T ss_dssp SS--SSHHHHHHHHHHHHCT--EEE----S-B-TTC
T ss_pred ceecHHHHHHHHHHHHHHcCCCeeccccccCCCCCC
Confidence 57999 899999999999999999999999865433
No 167
>TIGR00539 hemN_rel putative oxygen-independent coproporphyrinogen III oxidase. Experimentally determined examples of oxygen-independent coproporphyrinogen III oxidase, an enzyme that replaces HemF function under anaerobic conditions, belong to a family of proteins described by the model hemN. This model, hemN_rel, models a closely related protein, shorter at the amino end and lacking the region containing the motif PYRT[SC]YP found in members of the hemN family. Several species, including E. coli, Helicobacter pylori, Aquifex aeolicus, and Chlamydia trachomatis, have members of both this family and the E. coli hemN family. The member of this family from Bacillus subtilis was shown to complement an hemF/hemN double mutant of Salmonella typimurium and to prevent accumulation of coproporphyrinogen III under anaerobic conditions, but the exact role of this protein is still uncertain. It is found in a number of species that do not synthesize heme de novo.
Probab=43.09 E-value=1.3e+02 Score=33.25 Aligned_cols=62 Identities=24% Similarity=0.320 Sum_probs=43.5
Q ss_pred hhhHHHHHcCCCeEEECcccccCccCcccCCCCCCCcccCCCCCCCCCCCcHHHHHHHHHHHHHcCCE-EEEEeeecccc
Q 003901 268 EKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYNYSSAGIRNCGHDAINEFKLLVREAHKRGIE-VVMDVVFNHTV 346 (788)
Q Consensus 268 ~~L~yLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~wgY~~~~~~~~~~G~~~elk~lV~~aH~~Gi~-VilDvV~NH~~ 346 (788)
++|..|+++||+.|.|-. ..+.... . ..+ -+..+.++..+.|+.+++.|+. |-+|+.++..+
T Consensus 101 e~l~~l~~~Gv~risiGv-qS~~~~~------------l---~~l-gR~~~~~~~~~ai~~l~~~G~~~v~~dli~GlPg 163 (360)
T TIGR00539 101 EWCKGLKGAGINRLSLGV-QSFRDDK------------L---LFL-GRQHSAKNIAPAIETALKSGIENISLDLMYGLPL 163 (360)
T ss_pred HHHHHHHHcCCCEEEEec-ccCChHH------------H---HHh-CCCCCHHHHHHHHHHHHHcCCCeEEEeccCCCCC
Confidence 678999999999998643 2211000 0 001 1345789999999999999996 78999988754
No 168
>smart00812 Alpha_L_fucos Alpha-L-fucosidase. O-Glycosyl hydrolases (EC 3.2.1.-) are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site PUBMED:. Because the fold of proteins is better conserved than their sequences, some of the families can be grouped in 'clans'. Family 29 encompasses alpha-L-fucosidases, which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Deficiency of alpha-L-fucosidase results in the lysosomal storage disease fucosidosis.
Probab=42.52 E-value=1.8e+02 Score=32.68 Aligned_cols=117 Identities=23% Similarity=0.259 Sum_probs=65.9
Q ss_pred HhhhHHHHHcCCCeEEECcccccCccCcccCCCCCCCcccCCCCCCCCCCCcHHHHHHHHHHHHHcCCEEEEEeeecccc
Q 003901 267 VEKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYNYSSAGIRNCGHDAINEFKLLVREAHKRGIEVVMDVVFNHTV 346 (788)
Q Consensus 267 ~~~L~yLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~wgY~~~~~~~~~~G~~~elk~lV~~aH~~Gi~VilDvV~NH~~ 346 (788)
.+-++-+|+.|...|-|+-=+.- +.--+ ++.+. .|++. +.+. ..+=+++|+++|+++||++-+ | |..
T Consensus 84 ~~Wa~~~k~AGakY~vlTaKHHD-GF~lw--~S~~t--~~n~~---~~~p-krDiv~el~~A~rk~Glk~G~---Y-~S~ 150 (384)
T smart00812 84 EEWADLFKKAGAKYVVLTAKHHD-GFCLW--DSKYS--NWNAV---DTGP-KRDLVGELADAVRKRGLKFGL---Y-HSL 150 (384)
T ss_pred HHHHHHHHHcCCCeEEeeeeecC-Ccccc--CCCCC--CCccc---CCCC-CcchHHHHHHHHHHcCCeEEE---E-cCH
Confidence 33468899999999987654431 00001 11111 23332 2223 457799999999999999987 2 221
Q ss_pred CCCCCCCccccCCCCCccceeeCCCCCcccCCCCccccCCCCHHHHHHH---HHHHHHHHHhcCccEEEEeccc
Q 003901 347 EGNDKGPILSFRGVDNSVYYMLAPKGEFYNYSGCGNTFNCNHPVVRQFI---VDCLRYWVTEMHVDGFRFDLAS 417 (788)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~yy~~~~~g~~~~~~g~~~dln~~~p~vr~~i---~d~l~~W~~e~gVDGFR~D~a~ 417 (788)
. .| .++.|-.. ... .......+...+|+ ..-++-.+..||-|.+=||...
T Consensus 151 ~--DW---------~~p~y~~~------~~~----~~~~~~~~~~~~y~~~~~~Ql~ELit~Ygpd~lWfD~~~ 203 (384)
T smart00812 151 F--DW---------FNPLYAGP------TSS----DEDPDNWPRFQEFVDDWLPQLRELVTRYKPDLLWFDGGW 203 (384)
T ss_pred H--Hh---------CCCccccc------ccc----ccccccchhHHHHHHHHHHHHHHHHhcCCCceEEEeCCC
Confidence 1 11 11111100 000 00112234556777 7788888889999999999653
No 169
>PRK01060 endonuclease IV; Provisional
Probab=42.47 E-value=46 Score=35.23 Aligned_cols=52 Identities=12% Similarity=0.139 Sum_probs=36.8
Q ss_pred HHHHhhhHHHHHcCCCeEEECcccccCccCcccCCCCCCCcccCCCCCCCCCCCcHHHHHHHHHHHHHcCCEE
Q 003901 264 LGVVEKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYNYSSAGIRNCGHDAINEFKLLVREAHKRGIEV 336 (788)
Q Consensus 264 ~gl~~~L~yLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~wgY~~~~~~~~~~G~~~elk~lV~~aH~~Gi~V 336 (788)
.++.+.|+.++++|+++|+|.+--.. .| . ...-+.++++++-+.+.++||++
T Consensus 12 ~~~~~~l~~~~~~G~d~vEl~~~~p~-------------~~--~------~~~~~~~~~~~lk~~~~~~gl~~ 63 (281)
T PRK01060 12 GGLEGAVAEAAEIGANAFMIFTGNPQ-------------QW--K------RKPLEELNIEAFKAACEKYGISP 63 (281)
T ss_pred CCHHHHHHHHHHcCCCEEEEECCCCC-------------CC--c------CCCCCHHHHHHHHHHHHHcCCCC
Confidence 33777889999999999998653110 01 0 11236778888888999999995
No 170
>PRK05904 coproporphyrinogen III oxidase; Provisional
Probab=42.43 E-value=40 Score=37.32 Aligned_cols=64 Identities=19% Similarity=0.211 Sum_probs=45.4
Q ss_pred HhhhHHHHHcCCCeEEECcccccCccCcccCCCCCCCcccCCCCCCCCCCCcHHHHHHHHHHHHHcCCE-EEEEeeeccc
Q 003901 267 VEKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYNYSSAGIRNCGHDAINEFKLLVREAHKRGIE-VVMDVVFNHT 345 (788)
Q Consensus 267 ~~~L~yLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~wgY~~~~~~~~~~G~~~elk~lV~~aH~~Gi~-VilDvV~NH~ 345 (788)
.++|..|+++|++.|.| ++..+...--. . . -+-.+.++..+.|+.+++.|+. |-+|+.++.-
T Consensus 103 ~e~l~~lk~~G~nrisi-GvQS~~d~vL~----~-----------l-~R~~~~~~~~~ai~~lr~~G~~~v~~dlI~GlP 165 (353)
T PRK05904 103 QSQINLLKKNKVNRISL-GVQSMNNNILK----Q-----------L-NRTHTIQDSKEAINLLHKNGIYNISCDFLYCLP 165 (353)
T ss_pred HHHHHHHHHcCCCEEEE-ecccCCHHHHH----H-----------c-CCCCCHHHHHHHHHHHHHcCCCcEEEEEeecCC
Confidence 36789999999999975 34332210000 0 1 1345789999999999999997 9999999886
Q ss_pred cC
Q 003901 346 VE 347 (788)
Q Consensus 346 ~~ 347 (788)
++
T Consensus 166 gq 167 (353)
T PRK05904 166 IL 167 (353)
T ss_pred CC
Confidence 54
No 171
>PF01212 Beta_elim_lyase: Beta-eliminating lyase; InterPro: IPR001597 This domain is found in many tryptophanases (tryptophan indole-lyase, TNase), tyrosine phenol-lyases (TPL) and threonine aldolases. It is involved in the degradation of amino acids. The glycine cleavage system is composed of four proteins: P, T, L and H. In Bacillus subtilis, the P 'protein' is an heterodimer of two subunits. The glycine cleavage system catalyses the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; GO: 0016829 lyase activity, 0006520 cellular amino acid metabolic process; PDB: 3PJ0_C 2C44_C 2V0Y_A 2OQX_A 2V1P_A 1AX4_B 3LWS_A 1C7G_A 1V72_A 2YHK_B ....
Probab=41.48 E-value=24 Score=37.90 Aligned_cols=24 Identities=21% Similarity=0.426 Sum_probs=20.9
Q ss_pred cHHHHHHHHHHHHHcCCEEEEEee
Q 003901 318 AINEFKLLVREAHKRGIEVVMDVV 341 (788)
Q Consensus 318 ~~~elk~lV~~aH~~Gi~VilDvV 341 (788)
+++|++++.+-||++||.|.||..
T Consensus 143 s~~el~ai~~~a~~~gl~lhmDGA 166 (290)
T PF01212_consen 143 SLEELRAISELAREHGLPLHMDGA 166 (290)
T ss_dssp -HHHHHHHHHHHHHHT-EEEEEET
T ss_pred CHHHHHHHHHHHHhCceEEEEehh
Confidence 489999999999999999999975
No 172
>PRK09058 coproporphyrinogen III oxidase; Provisional
Probab=41.29 E-value=1.1e+02 Score=35.05 Aligned_cols=63 Identities=25% Similarity=0.220 Sum_probs=44.3
Q ss_pred HhhhHHHHHcCCCeEEECcccccCccCcccCCCCCCCcccCCCCCCCCCCCcHHHHHHHHHHHHHcC-CEEEEEeeeccc
Q 003901 267 VEKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYNYSSAGIRNCGHDAINEFKLLVREAHKRG-IEVVMDVVFNHT 345 (788)
Q Consensus 267 ~~~L~yLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~wgY~~~~~~~~~~G~~~elk~lV~~aH~~G-i~VilDvV~NH~ 345 (788)
.++|..|+++|||.|.| .|..+....-. . + -+.-+.++..+.|+.+++.| +.|.+|++++.-
T Consensus 163 ~e~l~~l~~aGvnRiSi-GVQSf~d~vLk----~-----------l-gR~~~~~~~~~~i~~l~~~g~~~v~~DlI~GlP 225 (449)
T PRK09058 163 DEKADAALDAGANRFSI-GVQSFNTQVRR----R-----------A-GRKDDREEVLARLEELVARDRAAVVCDLIFGLP 225 (449)
T ss_pred HHHHHHHHHcCCCEEEe-cCCcCCHHHHH----H-----------h-CCCCCHHHHHHHHHHHHhCCCCcEEEEEEeeCC
Confidence 36789999999999974 44443211000 0 0 12336788999999999999 889999999875
Q ss_pred c
Q 003901 346 V 346 (788)
Q Consensus 346 ~ 346 (788)
+
T Consensus 226 g 226 (449)
T PRK09058 226 G 226 (449)
T ss_pred C
Confidence 4
No 173
>COG1242 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=41.00 E-value=97 Score=32.79 Aligned_cols=58 Identities=19% Similarity=0.306 Sum_probs=43.5
Q ss_pred cHHHHHHHHHHHHHcCCEEEEEeeeccccCCCCCCCccccCCCCCccceeeCCCCCcccCCCCccccCCCCHHHHHHHHH
Q 003901 318 AINEFKLLVREAHKRGIEVVMDVVFNHTVEGNDKGPILSFRGVDNSVYYMLAPKGEFYNYSGCGNTFNCNHPVVRQFIVD 397 (788)
Q Consensus 318 ~~~elk~lV~~aH~~Gi~VilDvV~NH~~~~~~~~~~~~~~~~~~~~yy~~~~~g~~~~~~g~~~dln~~~p~vr~~i~d 397 (788)
+.+++.+-|..|+++||+|.--+.++--+ +-++.|++
T Consensus 166 d~~~y~dav~r~rkrgIkvc~HiI~GLPg-------------------------------------------E~~~~mle 202 (312)
T COG1242 166 DFACYVDAVKRLRKRGIKVCTHLINGLPG-------------------------------------------ETRDEMLE 202 (312)
T ss_pred chHHHHHHHHHHHHcCCeEEEEEeeCCCC-------------------------------------------CCHHHHHH
Confidence 46789999999999999987444332211 23678888
Q ss_pred HHHHHHHhcCccEEEEeccccc
Q 003901 398 CLRYWVTEMHVDGFRFDLASIM 419 (788)
Q Consensus 398 ~l~~W~~e~gVDGFR~D~a~~l 419 (788)
.++.-+ +.+|||+-+-..+.+
T Consensus 203 Tak~v~-~~~v~GIKlH~Lhvv 223 (312)
T COG1242 203 TAKIVA-ELGVDGIKLHPLHVV 223 (312)
T ss_pred HHHHHH-hcCCceEEEEEEEEe
Confidence 998666 999999999766655
No 174
>PRK09852 cryptic 6-phospho-beta-glucosidase; Provisional
Probab=40.47 E-value=64 Score=37.27 Aligned_cols=68 Identities=16% Similarity=0.227 Sum_probs=47.0
Q ss_pred CcCHHHHHhhhHHHHHcCCCeEEECcccccCccCcccCCCCCCCcccCCCCC-CCCCCCcHHHHHHHHHHHHHcCCEEEE
Q 003901 260 PGTYLGVVEKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYNYSSAGI-RNCGHDAINEFKLLVREAHKRGIEVVM 338 (788)
Q Consensus 260 ~G~~~gl~~~L~yLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~wgY~~~~~-~~~~~G~~~elk~lV~~aH~~Gi~Vil 338 (788)
...|....+.+..+|+||+++.-+.=-+.. .-+.+. ..+.-...+=.++||++|+++||++|+
T Consensus 67 ~D~Yhry~eDi~l~~~lG~~~yR~si~WsR----------------i~P~g~~~~~n~~~~~~Y~~~i~~l~~~gi~p~V 130 (474)
T PRK09852 67 IDFYHRYKEDIALMAEMGFKVFRTSIAWSR----------------LFPQGDELTPNQQGIAFYRSVFEECKKYGIEPLV 130 (474)
T ss_pred CchhhhhHHHHHHHHHcCCCeEEeeceeee----------------eeeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEE
Confidence 456888899999999999999886543321 111100 001123466789999999999999998
Q ss_pred Eeeeccc
Q 003901 339 DVVFNHT 345 (788)
Q Consensus 339 DvV~NH~ 345 (788)
.+. |.
T Consensus 131 tL~--H~ 135 (474)
T PRK09852 131 TLC--HF 135 (474)
T ss_pred Eee--CC
Confidence 774 64
No 175
>PLN02950 4-alpha-glucanotransferase
Probab=40.42 E-value=47 Score=41.46 Aligned_cols=60 Identities=17% Similarity=0.235 Sum_probs=39.2
Q ss_pred cEEEEEEcCC---CCEEEEEEEeCCCccCCceeeEEecccccCCCCCEEEEEEcCC--CCCceeeEEEc
Q 003901 106 GVNFSIFSSN---AVSATLCLITLSDLQENKVTEEIALDSFANKTGDVWHVFLKGD--FKDMLYGYKFD 169 (788)
Q Consensus 106 ~~~F~vwap~---A~~V~L~l~~~~d~~~~~~~~~~~l~~~~~~~~gvW~~~i~~~--~~~~~Y~y~~~ 169 (788)
.|+|+|-+|+ -++|.|+ -....+++|.....++|.. .....|++.+.-. .....|+|.+.
T Consensus 154 ~V~F~v~~~~~~~Gq~v~Vv-Gs~~eLGnW~~~~a~~Ls~---~~~p~W~~~v~lp~~~~~~EYKyv~~ 218 (909)
T PLN02950 154 VVRFKIACPRLEEGTSVYVT-GSIAQLGNWQVDDGLKLNY---TGDSIWEADCLVPKSDFPIKYKYALQ 218 (909)
T ss_pred eEEEEEecCccCCCCeEEEE-echhhcCCCCccccccccc---CCCCcEEEEEEecCCCceEEEEEEEE
Confidence 4899999984 4566554 2233566787766666643 3467899987532 23568988774
No 176
>cd04824 eu_ALAD_PBGS_cysteine_rich Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. The eukaryotic PBGSs represented by this model, which contain a cysteine-rich zinc binding motif (DXCXCX(Y/F)X3G(H/Q)CG), require zinc for their activity, they
Probab=40.17 E-value=1.2e+02 Score=32.66 Aligned_cols=111 Identities=10% Similarity=0.028 Sum_probs=64.4
Q ss_pred CCcCHHHHHhhhHHHHHcCCCeEEECcccccCccCcc-cCCCCCCCcccCCCCCCCCCCCcHHHHHHHHHHHHH--cCCE
Q 003901 259 HPGTYLGVVEKLDHLKDLGINCLELMPCHEFNELEYF-SYNSVLGDYNYSSAGIRNCGHDAINEFKLLVREAHK--RGIE 335 (788)
Q Consensus 259 ~~G~~~gl~~~L~yLk~LGvt~I~L~Pi~~~~~~~~~-~~~~~~~~wgY~~~~~~~~~~G~~~elk~lV~~aH~--~Gi~ 335 (788)
++=.+..+.+.+..+.++||++|-|-|+-+....+.. +. -.|++. |- +.+.|+++++ -.|-
T Consensus 46 ~r~s~d~l~~~~~~~~~~Gi~~v~LFgv~~~~~Kd~~~gs------~a~~~~-------g~---v~~air~iK~~~pdl~ 109 (320)
T cd04824 46 NRYGVNRLEEFLRPLVAKGLRSVILFGVPLKPGKDDRSGS------AADDED-------GP---VIQAIKLIREEFPELL 109 (320)
T ss_pred eeeCHHHHHHHHHHHHHCCCCEEEEeCCCccccCCcCccc------cccCCC-------Ch---HHHHHHHHHHhCCCcE
Confidence 3445788999999999999999999999432212211 11 123332 22 3344444444 4899
Q ss_pred EEEEeeeccccCCCCCCCccccCCCCCccceeeCCCCCcccCCCCccccCCCCHHHHHHHHHHHHHHHHhcCccEEE
Q 003901 336 VVMDVVFNHTVEGNDKGPILSFRGVDNSVYYMLAPKGEFYNYSGCGNTFNCNHPVVRQFIVDCLRYWVTEMHVDGFR 412 (788)
Q Consensus 336 VilDvV~NH~~~~~~~~~~~~~~~~~~~~yy~~~~~g~~~~~~g~~~dln~~~p~vr~~i~d~l~~W~~e~gVDGFR 412 (788)
||-||.+..-......+ -..+ .| .-.|.+..+.+.+...-.. +-|+|-.-
T Consensus 110 vi~Dvclc~YT~hGHcG--------------------il~~-~g-----~vdND~Tl~~L~k~Avs~A-~AGADiVA 159 (320)
T cd04824 110 IACDVCLCEYTSHGHCG--------------------ILYE-DG-----TINNEASVKRLAEVALAYA-KAGAHIVA 159 (320)
T ss_pred EEEeeeccCCCCCCcce--------------------eECC-CC-----cCcCHHHHHHHHHHHHHHH-HhCCCEEe
Confidence 99999987653321111 1100 00 1234566777777776777 77887543
No 177
>PRK13957 indole-3-glycerol-phosphate synthase; Provisional
Probab=39.54 E-value=80 Score=33.01 Aligned_cols=23 Identities=22% Similarity=0.499 Sum_probs=21.1
Q ss_pred cHHHHHHHHHHHHHcCCEEEEEe
Q 003901 318 AINEFKLLVREAHKRGIEVVMDV 340 (788)
Q Consensus 318 ~~~elk~lV~~aH~~Gi~VilDv 340 (788)
+.+++++|++.||+.||.+++.|
T Consensus 136 ~~~~l~~l~~~a~~lGle~LVEV 158 (247)
T PRK13957 136 TPSQIKSFLKHASSLGMDVLVEV 158 (247)
T ss_pred CHHHHHHHHHHHHHcCCceEEEE
Confidence 36789999999999999999997
No 178
>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism. 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....
Probab=39.49 E-value=21 Score=37.01 Aligned_cols=59 Identities=19% Similarity=0.269 Sum_probs=42.1
Q ss_pred HhhhHHHHHcCCCeEEECcccccCccCcccCCCCCCCcccCCCCCCCCCCCcHHHHHHHHHHHHHcCCEEEEEeeeccc
Q 003901 267 VEKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYNYSSAGIRNCGHDAINEFKLLVREAHKRGIEVVMDVVFNHT 345 (788)
Q Consensus 267 ~~~L~yLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~wgY~~~~~~~~~~G~~~elk~lV~~aH~~Gi~VilDvV~NH~ 345 (788)
........++|.+.|-++.-+....... |.+ ..+++++++++||+.||+||+...+...
T Consensus 79 ~~~ve~A~~~GAd~vd~vi~~~~~~~~~---------~~~-----------~~~~i~~v~~~~~~~gl~vIlE~~l~~~ 137 (236)
T PF01791_consen 79 VAEVEEAIRLGADEVDVVINYGALGSGN---------EDE-----------VIEEIAAVVEECHKYGLKVILEPYLRGE 137 (236)
T ss_dssp HHHHHHHHHTT-SEEEEEEEHHHHHTTH---------HHH-----------HHHHHHHHHHHHHTSEEEEEEEECECHH
T ss_pred HHHHHHHHHcCCceeeeecccccccccc---------HHH-----------HHHHHHHHHHHHhcCCcEEEEEEecCch
Confidence 4557888899999999887653211000 111 3789999999999999999999776554
No 179
>PRK11052 malQ 4-alpha-glucanotransferase; Provisional
Probab=39.23 E-value=58 Score=39.44 Aligned_cols=20 Identities=25% Similarity=0.219 Sum_probs=16.3
Q ss_pred CCcceeecccCCCcchhhhh
Q 003901 532 PWNSINFVCAHDGFSLADLV 551 (788)
Q Consensus 532 p~~~vnfv~nHD~~rl~d~~ 551 (788)
+.++|.|+++||+.|+..-.
T Consensus 539 ~~~sva~t~THD~pTl~Gww 558 (695)
T PRK11052 539 PEQSMATLTTHDLPTLRGYW 558 (695)
T ss_pred cCCeEEECCCCCChhHHHHH
Confidence 55789999999999987544
No 180
>PRK05660 HemN family oxidoreductase; Provisional
Probab=38.31 E-value=1.7e+02 Score=32.74 Aligned_cols=62 Identities=15% Similarity=0.184 Sum_probs=43.4
Q ss_pred hhhHHHHHcCCCeEEECcccccCccCcccCCCCCCCcccCCCCCCCCCCCcHHHHHHHHHHHHHcCCEE-EEEeeecccc
Q 003901 268 EKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYNYSSAGIRNCGHDAINEFKLLVREAHKRGIEV-VMDVVFNHTV 346 (788)
Q Consensus 268 ~~L~yLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~wgY~~~~~~~~~~G~~~elk~lV~~aH~~Gi~V-ilDvV~NH~~ 346 (788)
++|..||++|||.|.|-. ..+.... .. .+. +..+.++..+.|+.+++.|+.. -+|+.++..+
T Consensus 108 e~l~~Lk~~Gv~risiGv-qS~~~~~------------L~---~l~-r~~~~~~~~~ai~~~~~~G~~~v~~dli~Glpg 170 (378)
T PRK05660 108 DRFVGYQRAGVNRISIGV-QSFSEEK------------LK---RLG-RIHGPDEAKRAAKLAQGLGLRSFNLDLMHGLPD 170 (378)
T ss_pred HHHHHHHHcCCCEEEecc-CcCCHHH------------HH---HhC-CCCCHHHHHHHHHHHHHcCCCeEEEEeecCCCC
Confidence 789999999999998753 2111000 00 011 3457899999999999999975 5999988754
No 181
>PRK09249 coproporphyrinogen III oxidase; Provisional
Probab=37.91 E-value=1.7e+02 Score=33.51 Aligned_cols=63 Identities=24% Similarity=0.324 Sum_probs=44.0
Q ss_pred HhhhHHHHHcCCCeEEECcccccCccCcccCCCCCCCcccCCCCCCCCCCCcHHHHHHHHHHHHHcCC-EEEEEeeeccc
Q 003901 267 VEKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYNYSSAGIRNCGHDAINEFKLLVREAHKRGI-EVVMDVVFNHT 345 (788)
Q Consensus 267 ~~~L~yLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~wgY~~~~~~~~~~G~~~elk~lV~~aH~~Gi-~VilDvV~NH~ 345 (788)
.+.|..|+++|++.|.|-. ..+.... .. .+ .+..+.++..+.|+.+++.|+ .|-+|+.++..
T Consensus 151 ~e~l~~l~~aG~~risiGv-qS~~~~~------------L~---~l-~r~~~~~~~~~ai~~l~~~G~~~v~~dli~GlP 213 (453)
T PRK09249 151 LEMLDALRELGFNRLSLGV-QDFDPEV------------QK---AV-NRIQPFEFTFALVEAARELGFTSINIDLIYGLP 213 (453)
T ss_pred HHHHHHHHHcCCCEEEECC-CCCCHHH------------HH---Hh-CCCCCHHHHHHHHHHHHHcCCCcEEEEEEccCC
Confidence 3678999999999998643 2211100 00 01 134578899999999999999 79999998875
Q ss_pred c
Q 003901 346 V 346 (788)
Q Consensus 346 ~ 346 (788)
+
T Consensus 214 g 214 (453)
T PRK09249 214 K 214 (453)
T ss_pred C
Confidence 4
No 182
>PRK04302 triosephosphate isomerase; Provisional
Probab=37.77 E-value=58 Score=33.37 Aligned_cols=44 Identities=25% Similarity=0.296 Sum_probs=32.8
Q ss_pred hHHHHHcCCCeEEECcccccCccCcccCCCCCCCcccCCCCCCCCCCCcHHHHHHHHHHHHHcCCEEEEEe
Q 003901 270 LDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYNYSSAGIRNCGHDAINEFKLLVREAHKRGIEVVMDV 340 (788)
Q Consensus 270 L~yLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~wgY~~~~~~~~~~G~~~elk~lV~~aH~~Gi~VilDv 340 (788)
++.|+++|++.|- .|--| +.-..+|+++++++|++.||.+|+++
T Consensus 78 ~~~l~~~G~~~vi-i~~se--------------------------r~~~~~e~~~~v~~a~~~Gl~~I~~v 121 (223)
T PRK04302 78 PEAVKDAGAVGTL-INHSE--------------------------RRLTLADIEAVVERAKKLGLESVVCV 121 (223)
T ss_pred HHHHHHcCCCEEE-Eeccc--------------------------cccCHHHHHHHHHHHHHCCCeEEEEc
Confidence 7899999999994 33222 11124678999999999999999743
No 183
>PF13204 DUF4038: Protein of unknown function (DUF4038); PDB: 3KZS_D.
Probab=37.38 E-value=87 Score=33.58 Aligned_cols=76 Identities=17% Similarity=0.180 Sum_probs=38.1
Q ss_pred CHHHHHhhhHHHHHcCCCeEEECcccccCccCcccCCCCCCCcccCCC-----CC--CCCCCCcHHHHHHHHHHHHHcCC
Q 003901 262 TYLGVVEKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYNYSSA-----GI--RNCGHDAINEFKLLVREAHKRGI 334 (788)
Q Consensus 262 ~~~gl~~~L~yLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~wgY~~~-----~~--~~~~~G~~~elk~lV~~aH~~Gi 334 (788)
+...+..-|+.+|+-|||.|+++=+-+....... ..+.++++-.. ++ +++.| -+-+.++|+.|.++||
T Consensus 28 ~~~e~~~yL~~r~~qgFN~iq~~~l~~~~~~~~~---n~~~~~~~~~~~~~~~d~~~~N~~Y--F~~~d~~i~~a~~~Gi 102 (289)
T PF13204_consen 28 TREEWEQYLDTRKEQGFNVIQMNVLPQWDGYNTP---NRYGFAPFPDEDPGQFDFTRPNPAY--FDHLDRRIEKANELGI 102 (289)
T ss_dssp -HHHHHHHHHHHHHTT--EEEEES-SSSS-B-------TTS-BS-SSTT------TT----H--HHHHHHHHHHHHHTT-
T ss_pred CHHHHHHHHHHHHHCCCCEEEEEeCCCccccccc---ccCCCcCCCCCCccccCCCCCCHHH--HHHHHHHHHHHHHCCC
Confidence 3455555689999999999999766553322110 01111222100 11 22222 5678999999999999
Q ss_pred EEEEEeeecc
Q 003901 335 EVVMDVVFNH 344 (788)
Q Consensus 335 ~VilDvV~NH 344 (788)
.+- +|+=|
T Consensus 103 ~~~--lv~~w 110 (289)
T PF13204_consen 103 EAA--LVPFW 110 (289)
T ss_dssp EEE--EESS-
T ss_pred eEE--EEEEE
Confidence 985 55555
No 184
>PF00490 ALAD: Delta-aminolevulinic acid dehydratase; InterPro: IPR001731 Tetrapyrroles are large macrocyclic compounds derived from a common biosynthetic pathway []. The end-product, uroporphyrinogen III, is used to synthesise a number of important molecules, including vitamin B12, haem, sirohaem, chlorophyll, coenzyme F430 and phytochromobilin []. The first stage in tetrapyrrole synthesis is the synthesis of 5-aminoaevulinic acid ALA via two possible routes: (1) condensation of succinyl CoA and glycine (C4 pathway) using ALA synthase (2.3.1.37 from EC), or (2) decarboxylation of glutamate (C5 pathway) via three different enzymes, glutamyl-tRNA synthetase (6.1.1.17 from EC) to charge a tRNA with glutamate, glutamyl-tRNA reductase (1.2.1.70 from EC) to reduce glutamyl-tRNA to glutamate-1-semialdehyde (GSA), and GSA aminotransferase (5.4.3.8 from EC) to catalyse a transamination reaction to produce ALA. The second stage is to convert ALA to uroporphyrinogen III, the first macrocyclic tetrapyrrolic structure in the pathway. This is achieved by the action of three enzymes in one common pathway: porphobilinogen (PBG) synthase (or ALA dehydratase, 4.2.1.24 from EC) to condense two ALA molecules to generate porphobilinogen; hydroxymethylbilane synthase (or PBG deaminase, 2.5.1.61 from EC) to polymerise four PBG molecules into preuroporphyrinogen (tetrapyrrole structure); and uroporphyrinogen III synthase (4.2.1.75 from EC) to link two pyrrole units together (rings A and D) to yield uroporphyrinogen III. Uroporphyrinogen III is the first branch point of the pathway. To synthesise cobalamin (vitamin B12), sirohaem, and coenzyme F430, uroporphyrinogen III needs to be converted into precorrin-2 by the action of uroporphyrinogen III methyltransferase (2.1.1.107 from EC). To synthesise haem and chlorophyll, uroporphyrinogen III needs to be decarboxylated into coproporphyrinogen III by the action of uroporphyrinogen III decarboxylase (4.1.1.37 from EC) []. This entry represents porphobilinogen (PBG) synthase (PBGS, or 5-aminoaevulinic acid dehydratase, or ALAD, 4.2.1.24 from EC), which functions during the second stage of tetrapyrrole biosynthesis. This enzyme catalyses a Knorr-type condensation reaction between two molecules of ALA to generate porphobilinogen, the pyrrolic building block used in later steps []. The structure of the enzyme is based on a TIM barrel topology made up of eight identical subunits, where each subunit binds to a metal ion that is essential for activity, usually zinc (in yeast, mammals and certain bacteria) or magnesium (in plants and other bacteria). A lysine has been implicated in the catalytic mechanism []. The lack of PBGS enzyme causes a rare porphyric disorder known as ALAD porphyria, which appears to involve conformational changes in the enzyme [.; GO: 0004655 porphobilinogen synthase activity, 0046872 metal ion binding, 0033014 tetrapyrrole biosynthetic process; PDB: 2C1H_A 1W1Z_A 1GZG_B 1W5O_B 1W5Q_B 2C18_A 1B4K_A 2C19_B 1W56_B 2C13_B ....
Probab=36.64 E-value=1e+02 Score=33.37 Aligned_cols=135 Identities=15% Similarity=0.113 Sum_probs=69.7
Q ss_pred CeEEEEEeccCcccCC----CCCCCCCcCHHHHHhhhHHHHHcCCCeEEECcccccCccCcccCCCCCCCcccCCCCCCC
Q 003901 238 DLIIYEVHVRGFTRHE----SSKTEHPGTYLGVVEKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYNYSSAGIRN 313 (788)
Q Consensus 238 ~~viYei~v~~Ft~~~----~s~~~~~G~~~gl~~~L~yLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~wgY~~~~~~~ 313 (788)
+-.||=+||..=.+.. +-.+-++=.+..+.+.+..+.++||.+|-|-|+.+....+..+. ..|++.
T Consensus 27 ~dLI~PlFV~eg~~~~~~I~smPg~~r~sid~l~~~v~~~~~~GI~~v~lFgvi~~~~Kd~~gs------~a~~~~---- 96 (324)
T PF00490_consen 27 SDLIYPLFVVEGENEKEPISSMPGVYRYSIDSLVKEVEEAVDLGIRAVILFGVIDPSKKDEEGS------EAYNPD---- 96 (324)
T ss_dssp GGEEEEEEEESSSSSEEEETTSTTEEEEEHHHHHHHHHHHHHTT--EEEEEEE-SCSC-BSS-G------GGGSTT----
T ss_pred HHeEEEEEEecCCCcceeccCCCCeeeeCHHHHHHHHHHHHHCCCCEEEEEeeCCcccCCcchh------cccCCC----
Confidence 3466777765422210 00111334578889999999999999999999965333332222 123332
Q ss_pred CCCCcHHHHHHHHHHHHHcCCEEEEEeeeccccCCCCCCCccccCCCCCccceeeCCCCCcccCCCCccccCCCCHHHHH
Q 003901 314 CGHDAINEFKLLVREAHKRGIEVVMDVVFNHTVEGNDKGPILSFRGVDNSVYYMLAPKGEFYNYSGCGNTFNCNHPVVRQ 393 (788)
Q Consensus 314 ~~~G~~~elk~lV~~aH~~Gi~VilDvV~NH~~~~~~~~~~~~~~~~~~~~yy~~~~~g~~~~~~g~~~dln~~~p~vr~ 393 (788)
|-...--..|++.. -.|-||-||.+..-...+..+ +- . +.+|. -.|.+..+
T Consensus 97 ---g~v~~air~iK~~~-pdl~vi~Dvclc~YT~hGHcG-------il-----~-~~~g~------------idND~Tl~ 147 (324)
T PF00490_consen 97 ---GLVQRAIRAIKKAF-PDLLVITDVCLCEYTSHGHCG-------IL-----D-DEDGE------------IDNDETLE 147 (324)
T ss_dssp ---SHHHHHHHHHHHHS-TTSEEEEEE-STTTBTSSSSS-------EB-------CTTSS------------BEHHHHHH
T ss_pred ---ChHHHHHHHHHHhC-CCcEEEEecccccccCCCceE-------EE-----E-CCCCe------------EecHHHHH
Confidence 22333333333333 479999999987654322111 00 0 11111 22456677
Q ss_pred HHHHHHHHHHHhcCccEEE
Q 003901 394 FIVDCLRYWVTEMHVDGFR 412 (788)
Q Consensus 394 ~i~d~l~~W~~e~gVDGFR 412 (788)
.+.+...-.. +-|+|-.-
T Consensus 148 ~Lak~Al~~A-~AGADiVA 165 (324)
T PF00490_consen 148 RLAKQALSHA-EAGADIVA 165 (324)
T ss_dssp HHHHHHHHHH-HHT-SEEE
T ss_pred HHHHHHHHHH-HhCCCeec
Confidence 7777777777 78888654
No 185
>cd04823 ALAD_PBGS_aspartate_rich Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. All of PBGS_aspartate_rich contain an aspartate rich metal binding site with the general sequence DXALDX(Y/F)X3G(H/Q)DG. They also contain an allosteric magnesiu
Probab=36.27 E-value=1.4e+02 Score=32.19 Aligned_cols=109 Identities=12% Similarity=0.111 Sum_probs=65.0
Q ss_pred CcCHHHHHhhhHHHHHcCCCeEEECcccccCccCcccCCCCCCCcccCCCCCCCCCCCcHHHHHHHHHHHHH--cCCEEE
Q 003901 260 PGTYLGVVEKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYNYSSAGIRNCGHDAINEFKLLVREAHK--RGIEVV 337 (788)
Q Consensus 260 ~G~~~gl~~~L~yLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~wgY~~~~~~~~~~G~~~elk~lV~~aH~--~Gi~Vi 337 (788)
+=....+.+.+..+.++|+++|-|-|+......+..+.. .|++. |- +.+.|+++++ -.|-||
T Consensus 50 r~s~d~l~~~v~~~~~~Gi~~v~lFgv~~~~~KD~~gs~------A~~~~-------g~---v~~air~iK~~~p~l~vi 113 (320)
T cd04823 50 RLSIDELLKEAEEAVDLGIPAVALFPVTPPELKSEDGSE------AYNPD-------NL---VCRAIRAIKEAFPELGII 113 (320)
T ss_pred eeCHHHHHHHHHHHHHcCCCEEEEecCCCcccCCccccc------ccCCC-------Ch---HHHHHHHHHHhCCCcEEE
Confidence 345788999999999999999999999542222221111 23322 11 3444444444 489999
Q ss_pred EEeeeccccCCCCCCCccccCCCCCccceeeCCCCCcccCCCCccccCCCCHHHHHHHHHHHHHHHHhcCccEEE
Q 003901 338 MDVVFNHTVEGNDKGPILSFRGVDNSVYYMLAPKGEFYNYSGCGNTFNCNHPVVRQFIVDCLRYWVTEMHVDGFR 412 (788)
Q Consensus 338 lDvV~NH~~~~~~~~~~~~~~~~~~~~yy~~~~~g~~~~~~g~~~dln~~~p~vr~~i~d~l~~W~~e~gVDGFR 412 (788)
-||.+.+....+..+ -..+ . .-.|.+..+.+.+...-.. +-|+|-.-
T Consensus 114 ~DVclc~YT~hGHcG--------------------il~~-----~--~idND~Tl~~L~~~Avs~A-~AGADiVA 160 (320)
T cd04823 114 TDVALDPYTSHGHDG--------------------IVRD-----G--GILNDETVEVLCKQALVQA-EAGADIVA 160 (320)
T ss_pred EeeeccCCCCCCcce--------------------eccC-----C--cCcCHHHHHHHHHHHHHHH-HhCCCEEE
Confidence 999987754322111 1100 0 1335567777777777777 67887543
No 186
>PF08821 CGGC: CGGC domain; InterPro: IPR014925 Proteins in this entry are a quite highly conserved sequence of CGGC in its central region. The region has many conserved cysteines and histidines suggestive of a zinc binding function.
Probab=36.14 E-value=1.3e+02 Score=27.06 Aligned_cols=54 Identities=28% Similarity=0.399 Sum_probs=37.2
Q ss_pred HHHHHhhhHHHHHcCCCeEEECcccccCccCcccCCCCCCCcccCCCCCCCCCCCcHHHHHHHHHHHHHcCCEEEE
Q 003901 263 YLGVVEKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYNYSSAGIRNCGHDAINEFKLLVREAHKRGIEVVM 338 (788)
Q Consensus 263 ~~gl~~~L~yLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~wgY~~~~~~~~~~G~~~elk~lV~~aH~~Gi~Vil 338 (788)
=..+..++..|++-|+++|+|.......... + +--..++++++|++.- |+.||.
T Consensus 51 g~~~~~~~~~l~~~~~d~IHlssC~~~~~~~-----------~---------~CP~~~~~~~~I~~~~--gi~VV~ 104 (107)
T PF08821_consen 51 GRKLVRRIKKLKKNGADVIHLSSCMVKGNPH-----------G---------PCPHIDEIKKIIEEKF--GIEVVE 104 (107)
T ss_pred hhHHHHHHHHHHHCCCCEEEEcCCEecCCCC-----------C---------CCCCHHHHHHHHHHHh--CCCEee
Confidence 3567888899999999999999988743100 0 1112677777766543 998874
No 187
>PRK15447 putative protease; Provisional
Probab=35.74 E-value=89 Score=33.75 Aligned_cols=52 Identities=15% Similarity=0.123 Sum_probs=36.8
Q ss_pred cCHHHHHhhhHHHHHcCCCeEEECcccccCccCcccCCCCCCCcccCCCCCCCCCCCcHHHHHHHHHHHHHcCCEEEE
Q 003901 261 GTYLGVVEKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYNYSSAGIRNCGHDAINEFKLLVREAHKRGIEVVM 338 (788)
Q Consensus 261 G~~~gl~~~L~yLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~wgY~~~~~~~~~~G~~~elk~lV~~aH~~Gi~Vil 338 (788)
|++..+ ...|++.|+++|||--. .++- .. .+ +.+|+++.|+.||++|.+|++
T Consensus 15 ~~~~~~---~~~~~~~gaDaVY~g~~-~~~~--------R~-------------~f-~~~~l~e~v~~~~~~gkkvyv 66 (301)
T PRK15447 15 ETVRDF---YQRAADSPVDIVYLGET-VCSK--------RR-------------EL-KVGDWLELAERLAAAGKEVVL 66 (301)
T ss_pred CCHHHH---HHHHHcCCCCEEEECCc-cCCC--------cc-------------CC-CHHHHHHHHHHHHHcCCEEEE
Confidence 555554 35678899999998621 1100 00 12 579999999999999999987
No 188
>PRK13347 coproporphyrinogen III oxidase; Provisional
Probab=35.50 E-value=2e+02 Score=32.99 Aligned_cols=63 Identities=17% Similarity=0.192 Sum_probs=44.3
Q ss_pred HhhhHHHHHcCCCeEEECcccccCccCcccCCCCCCCcccCCCCCCCCCCCcHHHHHHHHHHHHHcCCE-EEEEeeeccc
Q 003901 267 VEKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYNYSSAGIRNCGHDAINEFKLLVREAHKRGIE-VVMDVVFNHT 345 (788)
Q Consensus 267 ~~~L~yLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~wgY~~~~~~~~~~G~~~elk~lV~~aH~~Gi~-VilDvV~NH~ 345 (788)
.+.|..|+++||+.|.|-. ..+...- .. .+ -+..+.++..+.|+.+++.|+. |-+|+.++.-
T Consensus 152 ~e~l~~L~~~G~~rvsiGv-QS~~~~v------------l~---~l-~R~~~~~~~~~ai~~lr~~G~~~v~~dli~GlP 214 (453)
T PRK13347 152 AEMLQALAALGFNRASFGV-QDFDPQV------------QK---AI-NRIQPEEMVARAVELLRAAGFESINFDLIYGLP 214 (453)
T ss_pred HHHHHHHHHcCCCEEEECC-CCCCHHH------------HH---Hh-CCCCCHHHHHHHHHHHHhcCCCcEEEeEEEeCC
Confidence 3678999999999998754 2211000 00 01 1346788999999999999997 8899998875
Q ss_pred c
Q 003901 346 V 346 (788)
Q Consensus 346 ~ 346 (788)
+
T Consensus 215 g 215 (453)
T PRK13347 215 H 215 (453)
T ss_pred C
Confidence 4
No 189
>PRK13384 delta-aminolevulinic acid dehydratase; Provisional
Probab=35.36 E-value=1.5e+02 Score=31.98 Aligned_cols=129 Identities=12% Similarity=0.146 Sum_probs=73.1
Q ss_pred CeEEEEEeccCcccCC----CCCCCCCcCHHHHHhhhHHHHHcCCCeEEECcccccCccCcccCCCCCCCcccCCCCCCC
Q 003901 238 DLIIYEVHVRGFTRHE----SSKTEHPGTYLGVVEKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYNYSSAGIRN 313 (788)
Q Consensus 238 ~~viYei~v~~Ft~~~----~s~~~~~G~~~gl~~~L~yLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~wgY~~~~~~~ 313 (788)
+-.||=++|..=.+.. +-.+-++=....+.+.+..+.++||++|-|-|+-+. .+..+. -.|++.+
T Consensus 31 ~dLI~PlFV~eg~~~~~~I~smPg~~r~sid~l~~~~~~~~~~Gi~~v~lFgv~~~--Kd~~gs------~A~~~~g--- 99 (322)
T PRK13384 31 SDLIYPIFIEEHITDAVPISTLPGISRLPESALADEIERLYALGIRYVMPFGISHH--KDAKGS------DTWDDNG--- 99 (322)
T ss_pred HHceeeEEEecCCCCceecCCCCCcceECHHHHHHHHHHHHHcCCCEEEEeCCCCC--CCCCcc------cccCCCC---
Confidence 3467777775321111 001224455788889999999999999999999432 221111 1233222
Q ss_pred CCCCcHHHHHHHHHHHHHc--CCEEEEEeeeccccCCCCCCCccccCCCCCccceeeCCCCCcccCCCCccccCCCCHHH
Q 003901 314 CGHDAINEFKLLVREAHKR--GIEVVMDVVFNHTVEGNDKGPILSFRGVDNSVYYMLAPKGEFYNYSGCGNTFNCNHPVV 391 (788)
Q Consensus 314 ~~~G~~~elk~lV~~aH~~--Gi~VilDvV~NH~~~~~~~~~~~~~~~~~~~~yy~~~~~g~~~~~~g~~~dln~~~p~v 391 (788)
- +.+-|+++++. .|-||-||.+......+..+ -..+ | .-.|.+.
T Consensus 100 ----~---v~~air~iK~~~pdl~vi~DVcLc~YT~hGHcG--------------------il~~----g---~i~ND~T 145 (322)
T PRK13384 100 ----L---LARMVRTIKAAVPEMMVIPDICFCEYTDHGHCG--------------------VLHN----D---EVDNDAT 145 (322)
T ss_pred ----h---HHHHHHHHHHHCCCeEEEeeeecccCCCCCcee--------------------eccC----C---cCccHHH
Confidence 1 34444445544 89999999987653322111 1100 0 1235567
Q ss_pred HHHHHHHHHHHHHhcCccEEE
Q 003901 392 RQFIVDCLRYWVTEMHVDGFR 412 (788)
Q Consensus 392 r~~i~d~l~~W~~e~gVDGFR 412 (788)
.+.+.+...-.. +-|+|-.-
T Consensus 146 l~~L~~~Als~A-~AGADiVA 165 (322)
T PRK13384 146 VENLVKQSVTAA-KAGADMLA 165 (322)
T ss_pred HHHHHHHHHHHH-HcCCCeEe
Confidence 777777777777 77887543
No 190
>PRK08446 coproporphyrinogen III oxidase; Provisional
Probab=34.92 E-value=68 Score=35.42 Aligned_cols=64 Identities=20% Similarity=0.392 Sum_probs=44.8
Q ss_pred HhhhHHHHHcCCCeEEECcccccCccCcccCCCCCCCcccCCCCCCCCCCCcHHHHHHHHHHHHHcCCE-EEEEeeeccc
Q 003901 267 VEKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYNYSSAGIRNCGHDAINEFKLLVREAHKRGIE-VVMDVVFNHT 345 (788)
Q Consensus 267 ~~~L~yLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~wgY~~~~~~~~~~G~~~elk~lV~~aH~~Gi~-VilDvV~NH~ 345 (788)
.++|..|+++|||.|.| .|..+....- ..+ -+..+.++..+.|+.+++.|+. |-+|+.++..
T Consensus 98 ~e~l~~l~~~GvnRiSi-GvQS~~~~~L---------------~~l-gR~~~~~~~~~ai~~lr~~g~~~v~iDli~GlP 160 (350)
T PRK08446 98 KAWLKGMKNLGVNRISF-GVQSFNEDKL---------------KFL-GRIHSQKQIIKAIENAKKAGFENISIDLIYDTP 160 (350)
T ss_pred HHHHHHHHHcCCCEEEE-ecccCCHHHH---------------HHc-CCCCCHHHHHHHHHHHHHcCCCEEEEEeecCCC
Confidence 37889999999999984 4444321100 001 1344688999999999999997 6699999875
Q ss_pred cC
Q 003901 346 VE 347 (788)
Q Consensus 346 ~~ 347 (788)
+.
T Consensus 161 gq 162 (350)
T PRK08446 161 LD 162 (350)
T ss_pred CC
Confidence 53
No 191
>cd05814 CBM20_Prei4 Prei4, N-terminal CBM20 (carbohydrate-binding module, family 20) domain. Preimplantation protein 4 (Prei4) is a protein of unknown function that is expressed during mouse preimplantation embryogenesis. In addition to the N-terminal CBM20 domain, Prei4 contains a C-terminal glycerophosphoryl diester phosphodiesterase (GDPD) domain. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognition of appropriate regions of starch.
Probab=34.71 E-value=92 Score=28.50 Aligned_cols=62 Identities=18% Similarity=0.272 Sum_probs=37.2
Q ss_pred cEEEEEEcC---CCCEEEEEEEeCCCccCCceeeEEecccccCCCCCEEEEEEcCC-CCCceeeEEEc
Q 003901 106 GVNFSIFSS---NAVSATLCLITLSDLQENKVTEEIALDSFANKTGDVWHVFLKGD-FKDMLYGYKFD 169 (788)
Q Consensus 106 ~~~F~vwap---~A~~V~L~l~~~~d~~~~~~~~~~~l~~~~~~~~gvW~~~i~~~-~~~~~Y~y~~~ 169 (788)
.++|+|-+| -.++|.|+ -....+++|.....++|.... ..+..|++.+.-. .....|+|-+.
T Consensus 2 ~v~F~v~~~~~~~ge~v~v~-G~~~~LG~W~~~~a~~l~~~~-~~~~~W~~~v~lp~~~~veYkY~~~ 67 (120)
T cd05814 2 RVTFRVFASELAPGEVVAVV-GSLPVLGNWQPEKAVPLEKED-DDCNLWKASIELPRGVDFQYRYFVA 67 (120)
T ss_pred eEEEEEeeccCCCCCEEEEE-eChHHhCCCCHHhCeeCccCC-CcCCccEEEEEECCCCeEEEEEEEE
Confidence 478999885 23455554 111236778776677885421 2457898876432 23567777764
No 192
>PLN03236 4-alpha-glucanotransferase; Provisional
Probab=34.35 E-value=66 Score=39.04 Aligned_cols=26 Identities=12% Similarity=0.192 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHcCCEEEEEeeeccc
Q 003901 320 NEFKLLVREAHKRGIEVVMDVVFNHT 345 (788)
Q Consensus 320 ~elk~lV~~aH~~Gi~VilDvV~NH~ 345 (788)
.+++++-+.|+++||++|-|+-+.=.
T Consensus 274 ~Q~~~~~~yA~~~GI~L~GDLPIgVa 299 (745)
T PLN03236 274 RQLRRAAAHAAAKGVILKGDLPIGVD 299 (745)
T ss_pred HHHHHHHHHHHHCCCEEEEEeeceeC
Confidence 56788888999999999999986443
No 193
>TIGR01210 conserved hypothetical protein TIGR01210. This family of exclusively archaeal proteins has no characterized close homologs. Several rounds of PSI-BLAST with a stringent cutoff of 1e-8 shows apparent similarity of the central region of this family to the central regions of the oxygen-independent coproporphyrinogen III dehydrogenase HemN and to other enzymes.
Probab=34.18 E-value=91 Score=33.85 Aligned_cols=62 Identities=24% Similarity=0.267 Sum_probs=42.5
Q ss_pred HhhhHHHHHcCCC-eEEECcccccCccCcccCCCCCCCcccCCCCCCCCCCCcHHHHHHHHHHHHHcCCEEEEEeeecc
Q 003901 267 VEKLDHLKDLGIN-CLELMPCHEFNELEYFSYNSVLGDYNYSSAGIRNCGHDAINEFKLLVREAHKRGIEVVMDVVFNH 344 (788)
Q Consensus 267 ~~~L~yLk~LGvt-~I~L~Pi~~~~~~~~~~~~~~~~~wgY~~~~~~~~~~G~~~elk~lV~~aH~~Gi~VilDvV~NH 344 (788)
.+.|..|++.|++ .|.|-+ +..+..... ..++.++ +.+++.+.++.+|++||+|.+++.++.
T Consensus 117 ~e~L~~l~~aG~~~~v~iG~--ES~~d~~L~-------------~~inKg~-t~~~~~~ai~~~~~~Gi~v~~~~i~G~ 179 (313)
T TIGR01210 117 EEKLEELRKIGVNVEVAVGL--ETANDRIRE-------------KSINKGS-TFEDFIRAAELARKYGAGVKAYLLFKP 179 (313)
T ss_pred HHHHHHHHHcCCCEEEEEec--CcCCHHHHH-------------HhhCCCC-CHHHHHHHHHHHHHcCCcEEEEEEecC
Confidence 4678889999998 687644 211110000 0012223 789999999999999999999999874
No 194
>TIGR00538 hemN oxygen-independent coproporphyrinogen III oxidase. This model represents HemN, the oxygen-independent coproporphyrinogen III oxidase that replaces HemF function under anaerobic conditions. Several species, including E. coli, Helicobacter pylori, and Aquifex aeolicus, have both a member of this family and a member of another, closely related family for which there is no evidence of coproporphyrinogen III oxidase activity. Members of this family have a perfectly conserved motif PYRT[SC]YP in a region N-terminal to the region of homology with the related uncharacterized protein.
Probab=33.91 E-value=2.1e+02 Score=32.86 Aligned_cols=63 Identities=21% Similarity=0.303 Sum_probs=43.3
Q ss_pred HhhhHHHHHcCCCeEEECcccccCccCcccCCCCCCCcccCCCCCCCCCCCcHHHHHHHHHHHHHcCCE-EEEEeeeccc
Q 003901 267 VEKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYNYSSAGIRNCGHDAINEFKLLVREAHKRGIE-VVMDVVFNHT 345 (788)
Q Consensus 267 ~~~L~yLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~wgY~~~~~~~~~~G~~~elk~lV~~aH~~Gi~-VilDvV~NH~ 345 (788)
.+.|..|+++|++.|.|-. ..+.... .. .+. +..+.++..+.|+.+++.|++ |-+|+.++..
T Consensus 151 ~e~l~~lk~~G~~risiGv-qS~~~~~------------l~---~l~-r~~~~~~~~~ai~~l~~~G~~~v~~dli~GlP 213 (455)
T TIGR00538 151 KDVIDALRDEGFNRLSFGV-QDFNKEV------------QQ---AVN-RIQPEEMIFELMNHAREAGFTSINIDLIYGLP 213 (455)
T ss_pred HHHHHHHHHcCCCEEEEcC-CCCCHHH------------HH---HhC-CCCCHHHHHHHHHHHHhcCCCcEEEeEEeeCC
Confidence 3678999999999998643 2111000 00 011 335688999999999999996 7799988875
Q ss_pred c
Q 003901 346 V 346 (788)
Q Consensus 346 ~ 346 (788)
+
T Consensus 214 g 214 (455)
T TIGR00538 214 K 214 (455)
T ss_pred C
Confidence 4
No 195
>cd05816 CBM20_DPE2_repeat2 Disproportionating enzyme 2 (DPE2), N-terminal CBM20 (carbohydrate-binding module, family 20) domain, repeat 2. DPE2 is a transglucosidase that is essential for the cytosolic metabolism of maltose in plant leaves at night. Maltose is an intermediate on the pathway from starch to sucrose and DPE2 is thought to metabolize the maltose that is exported from the chloroplast. DPE2 has two N-terminal CBM20 domains as well as a C-terminal amylomaltase (4-alpha-glucanotransferase) catalytic domain. DPE1, the plastid version of this enzyme, has a transglucosidase domain that is similar to that of DPE2 but lacks the N-terminal CBM20 domains. Included in this group are PDE2-like proteins from Dictyostelium, Entamoeba, and Bacteroides. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in star
Probab=33.69 E-value=1.1e+02 Score=26.91 Aligned_cols=60 Identities=15% Similarity=0.178 Sum_probs=37.8
Q ss_pred cEEEEEEcCC---CCEEEEEEEeCCCccCCceeeEEecccccCCCCCEEEEEEcCCCC--CceeeEEEc
Q 003901 106 GVNFSIFSSN---AVSATLCLITLSDLQENKVTEEIALDSFANKTGDVWHVFLKGDFK--DMLYGYKFD 169 (788)
Q Consensus 106 ~~~F~vwap~---A~~V~L~l~~~~d~~~~~~~~~~~l~~~~~~~~gvW~~~i~~~~~--~~~Y~y~~~ 169 (788)
.|.|+|-.|. -+.|.|+ -....+++|.+...++|.. ..+..|++.++-... ...|+|.+.
T Consensus 1 ~v~f~v~~~~~~~Ge~v~i~-Gs~~~LG~W~~~~a~~l~~---~~~~~W~~~v~~p~~~~~ieYKyvi~ 65 (99)
T cd05816 1 VVQFKILCPYVPKGQSVYVT-GSSPELGNWDPQKALKLSD---VGFPIWEADIDISKDSFPFEYKYIIA 65 (99)
T ss_pred CEEEEEEcCccCCCCEEEEE-EChHHhCCCCccccccCCC---CCCCcEEEEEEeCCCCccEEEEEEEE
Confidence 3789999874 3455554 1222356777766777753 456899988754322 467888774
No 196
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=33.39 E-value=85 Score=33.11 Aligned_cols=44 Identities=20% Similarity=0.349 Sum_probs=33.7
Q ss_pred hhHHHHHcCCCeEEECcccccCccCcccCCCCCCCcccCCCCCCCCCCCcHHHHHHHHHHHHHcCCEEEEEee
Q 003901 269 KLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYNYSSAGIRNCGHDAINEFKLLVREAHKRGIEVVMDVV 341 (788)
Q Consensus 269 ~L~yLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~wgY~~~~~~~~~~G~~~elk~lV~~aH~~Gi~VilDvV 341 (788)
.++...+.|.++|.|+--. + +.+++++|++.||+.|+.+|+|+-
T Consensus 125 qi~~a~~~GAD~VlLi~~~----------------------------l-~~~~l~~li~~a~~lGl~~lvevh 168 (260)
T PRK00278 125 QIYEARAAGADAILLIVAA----------------------------L-DDEQLKELLDYAHSLGLDVLVEVH 168 (260)
T ss_pred HHHHHHHcCCCEEEEEecc----------------------------C-CHHHHHHHHHHHHHcCCeEEEEeC
Confidence 3666777788777765421 1 257899999999999999999973
No 197
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=33.33 E-value=81 Score=31.61 Aligned_cols=74 Identities=16% Similarity=0.155 Sum_probs=45.9
Q ss_pred hHHHHHcCCCeEEECcccccCccC----cccCCCCCCCcccCCCCCCCCCCCcHHHHHHHHHHHHHcCCEEEEEeeeccc
Q 003901 270 LDHLKDLGINCLELMPCHEFNELE----YFSYNSVLGDYNYSSAGIRNCGHDAINEFKLLVREAHKRGIEVVMDVVFNHT 345 (788)
Q Consensus 270 L~yLk~LGvt~I~L~Pi~~~~~~~----~~~~~~~~~~wgY~~~~~~~~~~G~~~elk~lV~~aH~~Gi~VilDvV~NH~ 345 (788)
|..+...|=.+|--.|=|-+-... ..|..+.....+|.-+++++-++.|+.||++| |.+.||+|+=-++++.-
T Consensus 95 L~EmlRVgr~~IVsFPNFg~W~~R~~l~~~GrmPvt~~lPy~WYdTPNih~~Ti~DFe~l---c~~~~i~I~~~~~~~~~ 171 (193)
T PF07021_consen 95 LEEMLRVGRRAIVSFPNFGHWRNRLQLLLRGRMPVTKALPYEWYDTPNIHLCTIKDFEDL---CRELGIRIEERVFLDGG 171 (193)
T ss_pred HHHHHHhcCeEEEEecChHHHHHHHHHHhcCCCCCCCCCCCcccCCCCcccccHHHHHHH---HHHCCCEEEEEEEEcCC
Confidence 566666677777666655421100 01111222223455555567789999999999 55789999999988876
Q ss_pred c
Q 003901 346 V 346 (788)
Q Consensus 346 ~ 346 (788)
.
T Consensus 172 ~ 172 (193)
T PF07021_consen 172 R 172 (193)
T ss_pred C
Confidence 5
No 198
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=32.97 E-value=3.5e+02 Score=28.73 Aligned_cols=83 Identities=14% Similarity=0.277 Sum_probs=55.6
Q ss_pred HHhhhHHHHHcCCCeEEECcccccCccCcccCCCCCCCcccCCCCCCCCCCCcHHHHHHHHHHHHHcCCEEEEEeeeccc
Q 003901 266 VVEKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYNYSSAGIRNCGHDAINEFKLLVREAHKRGIEVVMDVVFNHT 345 (788)
Q Consensus 266 l~~~L~yLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~wgY~~~~~~~~~~G~~~elk~lV~~aH~~Gi~VilDvV~NH~ 345 (788)
..+.++...+.|++.|.+ +.. ....+.++++|+.++++|++|..-+.+-..
T Consensus 93 ~~~di~~~~~~g~~~iri---~~~--------------------------~~~~~~~~~~i~~ak~~G~~v~~~i~~~~~ 143 (275)
T cd07937 93 VELFVEKAAKNGIDIFRI---FDA--------------------------LNDVRNLEVAIKAVKKAGKHVEGAICYTGS 143 (275)
T ss_pred HHHHHHHHHHcCCCEEEE---eec--------------------------CChHHHHHHHHHHHHHCCCeEEEEEEecCC
Confidence 455678888999999875 210 112678999999999999998764422111
Q ss_pred cCCCCCCCccccCCCCCccceeeCCCCCcccCCCCccccCCCCHHHHHHHHHHHHHHHHhcCccEEEE-ecccccc
Q 003901 346 VEGNDKGPILSFRGVDNSVYYMLAPKGEFYNYSGCGNTFNCNHPVVRQFIVDCLRYWVTEMHVDGFRF-DLASIMT 420 (788)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~yy~~~~~g~~~~~~g~~~dln~~~p~vr~~i~d~l~~W~~e~gVDGFR~-D~a~~l~ 420 (788)
+.. -.+++.+.++... ++|+|.+++ |.++.+.
T Consensus 144 ~~~------------------------------------------~~~~~~~~~~~~~-~~Ga~~i~l~DT~G~~~ 176 (275)
T cd07937 144 PVH------------------------------------------TLEYYVKLAKELE-DMGADSICIKDMAGLLT 176 (275)
T ss_pred CCC------------------------------------------CHHHHHHHHHHHH-HcCCCEEEEcCCCCCCC
Confidence 000 0255666676766 899999998 6666553
No 199
>COG1441 MenC O-succinylbenzoate synthase [Coenzyme metabolism]
Probab=32.31 E-value=54 Score=33.40 Aligned_cols=23 Identities=26% Similarity=0.530 Sum_probs=20.5
Q ss_pred CCcHHHHHHHHHHHHHcCCEEEE
Q 003901 316 HDAINEFKLLVREAHKRGIEVVM 338 (788)
Q Consensus 316 ~G~~~elk~lV~~aH~~Gi~Vil 338 (788)
-|+++-.+++|++||+.|+.-++
T Consensus 240 ~GSl~r~~eli~qAh~lGl~AVI 262 (321)
T COG1441 240 TGSLQRVRELVQQAHALGLTAVI 262 (321)
T ss_pred hhhHHHHHHHHHHHHhcCceeEe
Confidence 47899999999999999998754
No 200
>PRK11145 pflA pyruvate formate lyase-activating enzyme 1; Provisional
Probab=32.11 E-value=1.7e+02 Score=30.31 Aligned_cols=81 Identities=22% Similarity=0.320 Sum_probs=48.1
Q ss_pred eEEEEEeccCcccCCCCCCCCCcCHHHHHhhhHHHHHcC-CCeEEECcccccCccCcccCCCCCCCcccCCCCCCCCCCC
Q 003901 239 LIIYEVHVRGFTRHESSKTEHPGTYLGVVEKLDHLKDLG-INCLELMPCHEFNELEYFSYNSVLGDYNYSSAGIRNCGHD 317 (788)
Q Consensus 239 ~viYei~v~~Ft~~~~s~~~~~G~~~gl~~~L~yLk~LG-vt~I~L~Pi~~~~~~~~~~~~~~~~~wgY~~~~~~~~~~G 317 (788)
..|--+.+.++.+. -..+.+-+..|++++ +..|.|+|.+..+...+...+. .|.-.+. +--
T Consensus 164 v~i~~~li~g~nd~----------~~ei~~l~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~-----~~~~~~~---~~~ 225 (246)
T PRK11145 164 TWIRYVVVPGWTDD----------DDSAHRLGEFIKDMGNIEKIELLPYHELGKHKWEAMGE-----EYKLDGV---KPP 225 (246)
T ss_pred EEEEEEEECCCCCC----------HHHHHHHHHHHHhcCCcceEEEecCCccchhHHHHcCC-----cccccCC---CCC
Confidence 44555666776552 234444456667775 7899999998764322100000 1111111 223
Q ss_pred cHHHHHHHHHHHHHcCCEEE
Q 003901 318 AINEFKLLVREAHKRGIEVV 337 (788)
Q Consensus 318 ~~~elk~lV~~aH~~Gi~Vi 337 (788)
+.++++++.+.+.+.|++|+
T Consensus 226 ~~e~l~~~~~~~~~~g~~~~ 245 (246)
T PRK11145 226 SKETMERVKGILEQYGHKVM 245 (246)
T ss_pred CHHHHHHHHHHHHHcCCccc
Confidence 68999999999999999874
No 201
>TIGR03470 HpnH hopanoid biosynthesis associated radical SAM protein HpnH. The sequences represented by this model are members of the radical SAM superfamily of enzymes (pfam04055). These enzymes utilize an iron-sulfur redox cluster and S-adenosylmethionine to carry out diverse radical mediated reactions. The members of this clade are frequently found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. The linkage between SHC and this radical SAM enzyme is strong; one is nearly always observed in the same genome where the other is found. A hopanoid biosynthesis locus was described in Zymomonas mobilis consisting of the genes HpnA-E and SHC (HpnF). Continuing past SHC are found a phosphorylase enzyme (ZMO0873, i.e. HpnG, TIGR03468) and this radical SAM enzyme (ZMO0874) which we name here HpnH. Granted, in Z. mobilis, HpnH is in a convergent orientation with respect to HpnA-G, but one gene beyond HpnH
Probab=31.71 E-value=1.8e+02 Score=31.58 Aligned_cols=49 Identities=14% Similarity=0.196 Sum_probs=37.1
Q ss_pred CCcCHHHHHhhhHHHHHcCCCeEEECc-ccccCccCcccCCCCCCCcccCCCCCCCCCCCcHHHHHHHHHHHHHcCCE
Q 003901 259 HPGTYLGVVEKLDHLKDLGINCLELMP-CHEFNELEYFSYNSVLGDYNYSSAGIRNCGHDAINEFKLLVREAHKRGIE 335 (788)
Q Consensus 259 ~~G~~~gl~~~L~yLk~LGvt~I~L~P-i~~~~~~~~~~~~~~~~~wgY~~~~~~~~~~G~~~elk~lV~~aH~~Gi~ 335 (788)
..|+|..+.+.|..+++.|+. |.++- ++. --+.+++.++++.+++.|+.
T Consensus 144 ~~g~f~~~l~~I~~l~~~G~~-v~v~~tv~~---------------------------~~n~~ei~~~~~~~~~lGv~ 193 (318)
T TIGR03470 144 REGVFDRAVEAIREAKARGFR-VTTNTTLFN---------------------------DTDPEEVAEFFDYLTDLGVD 193 (318)
T ss_pred CCCcHHHHHHHHHHHHHCCCc-EEEEEEEeC---------------------------CCCHHHHHHHHHHHHHcCCC
Confidence 368999999999999999985 33322 221 01478999999999999994
No 202
>PF15640 Tox-MPTase4: Metallopeptidase toxin 4
Probab=31.63 E-value=45 Score=30.63 Aligned_cols=26 Identities=31% Similarity=0.438 Sum_probs=23.5
Q ss_pred CCCcHHHHHHHHHHHHHcCCEEEEEe
Q 003901 315 GHDAINEFKLLVREAHKRGIEVVMDV 340 (788)
Q Consensus 315 ~~G~~~elk~lV~~aH~~Gi~VilDv 340 (788)
++-+..|+|.+-+.+.++||+|++|=
T Consensus 17 ri~s~~d~k~~kk~m~~~gIkV~Idk 42 (132)
T PF15640_consen 17 RIMSVKDIKNFKKEMGKRGIKVKIDK 42 (132)
T ss_pred EeeeHHHHHHHHHHHHhCCcEEEECC
Confidence 56789999999999999999999983
No 203
>PF14509 GH97_C: Glycosyl-hydrolase 97 C-terminal, oligomerisation; PDB: 3A24_A 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A.
Probab=31.50 E-value=1.3e+02 Score=26.87 Aligned_cols=82 Identities=10% Similarity=0.163 Sum_probs=39.5
Q ss_pred CcEEEEEEEcCCCCE-EEEEEeCCC-CcEEEECCCCC-CCCeEE--EecCCCCC---CCCccCCCCchhhhhhhhcCCCC
Q 003901 694 SRFVAFTLIDSVKGE-IYVAFNASH-LPVIISLPKRP-GYRWEP--LVDTSKPE---PFDFLSSDLPAKEIAIKQYAPFL 765 (788)
Q Consensus 694 ~~vlaf~r~~~~~~~-i~Vv~N~~~-~~~~v~Lp~~~-g~~w~~--l~d~~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 765 (788)
...+++.|...++++ ++..+|... ...+++|+... +..|.. +.|..... +....... +.....
T Consensus 14 GeyvviARr~~~G~~Wyvg~in~~~~r~i~l~L~FL~~g~~y~a~i~~D~~~a~~~~~~~~~~~~---------~~v~~~ 84 (103)
T PF14509_consen 14 GEYVVIARRKRDGDDWYVGGINGEDARTITLPLSFLDKGKKYTATIYTDGPDADYTNPEAYKIET---------RKVTSG 84 (103)
T ss_dssp TTEEEEEEEETTTTEEEEEEEE-TT-EEEEEEGCCS-TT--EEEEEEEE-TTTCTTCTT-EEEEE---------EEE-TT
T ss_pred ceEEEEEEEcCCCCCEEEEEeeCCCceEEEEECcccCCCCcEEEEEEEeCCcccccCCcceEEEE---------EEECCC
Confidence 467788887743344 555778764 34566666655 435643 44443221 11110000 011123
Q ss_pred CCeeEEeeCCeEEEEEecC
Q 003901 766 DANLYPMLSYSSIILLLSP 784 (788)
Q Consensus 766 ~~~~~~v~~~s~~vl~~~~ 784 (788)
+..+++|+|....|++.+|
T Consensus 85 ~~l~i~l~~~GG~vi~~~p 103 (103)
T PF14509_consen 85 DKLTITLAPGGGFVIRITP 103 (103)
T ss_dssp -EEEEEE-TT-EEEEEEEE
T ss_pred CEEEEEEeCCCcEEEEEEC
Confidence 4678899999998888764
No 204
>PLN03236 4-alpha-glucanotransferase; Provisional
Probab=31.49 E-value=95 Score=37.74 Aligned_cols=33 Identities=15% Similarity=0.368 Sum_probs=29.4
Q ss_pred CCCcCHHHHHhhhHHHHHcCCCeEEECcccccC
Q 003901 258 EHPGTYLGVVEKLDHLKDLGINCLELMPCHEFN 290 (788)
Q Consensus 258 ~~~G~~~gl~~~L~yLk~LGvt~I~L~Pi~~~~ 290 (788)
.+.|||..+.+-++.+++.|.+.|+|+|+.+..
T Consensus 77 ~GIGDfgdL~~fvD~~a~~G~~~~QiLPL~~t~ 109 (745)
T PLN03236 77 VGAGDFGDLEALVDFAAEAGMSVVQLLPVNDTC 109 (745)
T ss_pred CCcccHHHHHHHHHHHHHcCCCEEEECCCCcCC
Confidence 457999998888999999999999999998853
No 205
>PRK15014 6-phospho-beta-glucosidase BglA; Provisional
Probab=31.40 E-value=87 Score=36.23 Aligned_cols=66 Identities=15% Similarity=0.228 Sum_probs=44.7
Q ss_pred CcCHHHHHhhhHHHHHcCCCeEEECcccccCccCcccCCCCCCCcccCCCCCC-CCCCCcHHHHHHHHHHHHHcCCEEEE
Q 003901 260 PGTYLGVVEKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYNYSSAGIR-NCGHDAINEFKLLVREAHKRGIEVVM 338 (788)
Q Consensus 260 ~G~~~gl~~~L~yLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~wgY~~~~~~-~~~~G~~~elk~lV~~aH~~Gi~Vil 338 (788)
...|....|.|..+|+||+++--++=-+. +.-+.+.. .+.-..++=.++||++|.++||+.|+
T Consensus 65 ~D~Yhry~EDI~Lm~elG~~~yRfSIsWs----------------RI~P~G~~~~~N~~gl~~Y~~lid~l~~~GI~P~v 128 (477)
T PRK15014 65 VDFYGHYKEDIKLFAEMGFKCFRTSIAWT----------------RIFPKGDEAQPNEEGLKFYDDMFDELLKYNIEPVI 128 (477)
T ss_pred cCcccccHHHHHHHHHcCCCEEEecccce----------------eeccCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEE
Confidence 44577788899999999999987543222 11111000 01123467789999999999999998
Q ss_pred Eee
Q 003901 339 DVV 341 (788)
Q Consensus 339 DvV 341 (788)
.+.
T Consensus 129 TL~ 131 (477)
T PRK15014 129 TLS 131 (477)
T ss_pred Eee
Confidence 875
No 206
>PRK13361 molybdenum cofactor biosynthesis protein A; Provisional
Probab=30.97 E-value=1.3e+02 Score=32.83 Aligned_cols=52 Identities=21% Similarity=0.258 Sum_probs=40.3
Q ss_pred CcCHHHHHhhhHHHHHcCCCeEEECcccccCccCcccCCCCCCCcccCCCCCCCCCCCcHHHHHHHHHHHHHcCCEEE
Q 003901 260 PGTYLGVVEKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYNYSSAGIRNCGHDAINEFKLLVREAHKRGIEVV 337 (788)
Q Consensus 260 ~G~~~gl~~~L~yLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~wgY~~~~~~~~~~G~~~elk~lV~~aH~~Gi~Vi 337 (788)
.|+|..+.+.++.+++.|+..|.+.-+.-. --+.+|+.+|++-+.+.|+.|.
T Consensus 136 ~g~~~~vl~~i~~~~~~Gi~~v~in~v~~~--------------------------g~N~~ei~~~~~~~~~~gi~~~ 187 (329)
T PRK13361 136 NGRLERVIAGIDAAKAAGFERIKLNAVILR--------------------------GQNDDEVLDLVEFCRERGLDIA 187 (329)
T ss_pred CCCHHHHHHHHHHHHHcCCCceEEEEEEEC--------------------------CCCHHHHHHHHHHHHhcCCeEE
Confidence 588999999999999999976666544310 0135889999999999998764
No 207
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=30.49 E-value=80 Score=32.51 Aligned_cols=59 Identities=17% Similarity=0.219 Sum_probs=40.8
Q ss_pred cCHHHHHhhhHHHHHcCCCeEEECcccccCccCcccCCCCCCCcccCCCCCCCCCCCcHHHHHHHHHHHHHcCCEEEEEe
Q 003901 261 GTYLGVVEKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYNYSSAGIRNCGHDAINEFKLLVREAHKRGIEVVMDV 340 (788)
Q Consensus 261 G~~~gl~~~L~yLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~wgY~~~~~~~~~~G~~~elk~lV~~aH~~Gi~VilDv 340 (788)
-++......+....++|++.|-+.--..... .--..++++++++.||+.|+++|+|+
T Consensus 73 ~~~~~~~~~v~~a~~~Ga~~v~~~~~~~~~~-----------------------~~~~~~~i~~v~~~~~~~g~~~iie~ 129 (235)
T cd00958 73 DNDKVLVASVEDAVRLGADAVGVTVYVGSEE-----------------------EREMLEELARVAAEAHKYGLPLIAWM 129 (235)
T ss_pred CCchhhhcCHHHHHHCCCCEEEEEEecCCch-----------------------HHHHHHHHHHHHHHHHHcCCCEEEEE
Confidence 4556666678889999999985433211000 00136789999999999999999976
Q ss_pred ee
Q 003901 341 VF 342 (788)
Q Consensus 341 V~ 342 (788)
..
T Consensus 130 ~~ 131 (235)
T cd00958 130 YP 131 (235)
T ss_pred ec
Confidence 44
No 208
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=30.36 E-value=1e+02 Score=32.29 Aligned_cols=51 Identities=10% Similarity=0.173 Sum_probs=34.9
Q ss_pred HHHhhhHHHHHcCCCeEEECcccccCccCcccCCCCCCCcccCCCCCCCCCCCcHHHHHHHHHHHHHcCCEEE
Q 003901 265 GVVEKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYNYSSAGIRNCGHDAINEFKLLVREAHKRGIEVV 337 (788)
Q Consensus 265 gl~~~L~yLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~wgY~~~~~~~~~~G~~~elk~lV~~aH~~Gi~Vi 337 (788)
-+.+.|+.++++|+++|+|.+-.. ..|.+ . .+..++++|-+.+.+.||+|.
T Consensus 14 ~l~~~l~~~~~~G~~~vEl~~~~~---------------~~~~~------~-~~~~~~~~l~~~~~~~gl~v~ 64 (275)
T PRK09856 14 PIEHAFRDASELGYDGIEIWGGRP---------------HAFAP------D-LKAGGIKQIKALAQTYQMPII 64 (275)
T ss_pred CHHHHHHHHHHcCCCEEEEccCCc---------------ccccc------c-cCchHHHHHHHHHHHcCCeEE
Confidence 377889999999999999853110 01111 0 134568888888999999974
No 209
>PRK09283 delta-aminolevulinic acid dehydratase; Validated
Probab=30.30 E-value=3.5e+02 Score=29.32 Aligned_cols=129 Identities=16% Similarity=0.127 Sum_probs=71.6
Q ss_pred CeEEEEEeccCcccCC----CCCCCCCcCHHHHHhhhHHHHHcCCCeEEECcccccCccCcccCCCCCCCcccCCCCCCC
Q 003901 238 DLIIYEVHVRGFTRHE----SSKTEHPGTYLGVVEKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYNYSSAGIRN 313 (788)
Q Consensus 238 ~~viYei~v~~Ft~~~----~s~~~~~G~~~gl~~~L~yLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~wgY~~~~~~~ 313 (788)
+-.||=++|..=.+.. +-.+-.+=....+.+.+..+.++||++|-|-|+-+ ..+..+. -.|++.
T Consensus 29 ~dlI~PiFV~eg~~~~~~I~smPg~~r~s~d~l~~~v~~~~~~Gi~av~LFgv~~--~Kd~~gs------~A~~~~---- 96 (323)
T PRK09283 29 NDLIYPLFVVEGENEREEIPSMPGVYRLSIDLLVKEAEEAVELGIPAVALFGVPE--LKDEDGS------EAYNPD---- 96 (323)
T ss_pred HHceeeEEEecCCCCccccCCCCCceeeCHHHHHHHHHHHHHCCCCEEEEeCcCC--CCCcccc------cccCCC----
Confidence 3456777765421111 01122344678899999999999999999999921 1121111 122322
Q ss_pred CCCCcHHHHHHHHHHHHH--cCCEEEEEeeeccccCCCCCCCccccCCCCCccceeeCCCCCcccCCCCccccCCCCHHH
Q 003901 314 CGHDAINEFKLLVREAHK--RGIEVVMDVVFNHTVEGNDKGPILSFRGVDNSVYYMLAPKGEFYNYSGCGNTFNCNHPVV 391 (788)
Q Consensus 314 ~~~G~~~elk~lV~~aH~--~Gi~VilDvV~NH~~~~~~~~~~~~~~~~~~~~yy~~~~~g~~~~~~g~~~dln~~~p~v 391 (788)
|- +.+.|+++++ -.|-||-||.+......+..+ -..+ | .-.|.+.
T Consensus 97 ---g~---v~rair~iK~~~p~l~vi~DVcLc~YT~hGHcG--------------------il~~--g-----~idND~T 143 (323)
T PRK09283 97 ---GL---VQRAIRAIKKAFPELGVITDVCLDEYTSHGHCG--------------------ILED--G-----YVDNDET 143 (323)
T ss_pred ---CH---HHHHHHHHHHhCCCcEEEEeeeccCCCCCCcee--------------------cccC--C-----cCcCHHH
Confidence 22 3333334433 489999999987653322111 1111 0 1125567
Q ss_pred HHHHHHHHHHHHHhcCccEEE
Q 003901 392 RQFIVDCLRYWVTEMHVDGFR 412 (788)
Q Consensus 392 r~~i~d~l~~W~~e~gVDGFR 412 (788)
.+.+.+...-.. +-|+|-.-
T Consensus 144 l~~L~~~Al~~A-~AGaDiVA 163 (323)
T PRK09283 144 LELLAKQALSQA-EAGADIVA 163 (323)
T ss_pred HHHHHHHHHHHH-HhCCCEEE
Confidence 777777776777 67887543
No 210
>PRK11059 regulatory protein CsrD; Provisional
Probab=29.94 E-value=94 Score=37.36 Aligned_cols=90 Identities=12% Similarity=0.020 Sum_probs=50.1
Q ss_pred CCeEEEEEeccCcccCCCCCCCCCcCHHHHHhhhHHHHHcCCCeEEECcccccCccCcccCCCCCCCcccCCCCC-----
Q 003901 237 RDLIIYEVHVRGFTRHESSKTEHPGTYLGVVEKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYNYSSAGI----- 311 (788)
Q Consensus 237 ~~~viYei~v~~Ft~~~~s~~~~~G~~~gl~~~L~yLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~wgY~~~~~----- 311 (788)
.+.++.|+.-.... .+...+...+..|+++||.-.- =+++.... ...|-.--+.++
T Consensus 516 ~~~l~~Ei~E~~~~----------~~~~~~~~~l~~L~~~G~~iai----ddfG~g~~-----s~~~L~~l~~d~iKid~ 576 (640)
T PRK11059 516 RKRLIFELAEADVC----------QHISRLRPVLRMLRGLGCRLAV----DQAGLTVV-----STSYIKELNVELIKLHP 576 (640)
T ss_pred cceEEEEEechhhh----------cCHHHHHHHHHHHHHCCCEEEE----ECCCCCcc-----cHHHHHhCCCCEEEECH
Confidence 35788898665432 3466677777888888875441 12211000 000000000111
Q ss_pred -----CCCCCCcHHHHHHHHHHHHHcCCEEEEEeeeccc
Q 003901 312 -----RNCGHDAINEFKLLVREAHKRGIEVVMDVVFNHT 345 (788)
Q Consensus 312 -----~~~~~G~~~elk~lV~~aH~~Gi~VilDvV~NH~ 345 (788)
++..-....-++.+|..||..||+||...|=+..
T Consensus 577 s~v~~i~~~~~~~~~v~sli~~a~~~~i~viAegVEt~~ 615 (640)
T PRK11059 577 SLVRNIHKRTENQLFVRSLVGACAGTETQVFATGVESRE 615 (640)
T ss_pred HHHhhhhcCchhHHHHHHHHHHHHHCCCeEEEEEeCCHH
Confidence 1112233445899999999999999999985553
No 211
>PF04914 DltD_C: DltD C-terminal region; InterPro: IPR006998 The dlt operon (dltA to dltD) of Lactobacillus rhamnosus 7469 encodes four proteins responsible for the esterification of lipoteichoic acid (LTA) by D-alanine. These esters play an important role in controlling the net anionic charge of the poly (GroP) moiety of LTA. DltA and DltC encode the D-alanine-D-alanyl carrier protein ligase (Dcl) and D-alanyl carrier protein (Dcp), respectively. Whereas the functions of DltA and DltC are defined, the functions of DltB and DltD are unknown. In vitro assays showed that DltD bound Dcp for ligation with D-alanine by Dcl in the presence of ATP. In contrast, the homologue of Dcp, the Escherichia coli acyl carrier protein (ACP), involved in fatty acid biosynthesis, was not bound to DltD and thus was not ligated with D-alanine. DltD also catalyzed the hydrolysis of the mischarged D-alanyl-ACP. The hydrophobic N-terminal sequence of DltD was required for anchoring the protein in the membrane. It is hypothesized that this membrane-associated DltD facilitates the binding of Dcp and Dcl for ligation of Dcp with D-alanine and that the resulting D-alanyl-Dcp is translocated to the primary site of D-alanylation []. These sequences contain the C-terminal region of DltD.; PDB: 3BMA_C.
Probab=29.45 E-value=98 Score=28.99 Aligned_cols=57 Identities=19% Similarity=0.374 Sum_probs=38.5
Q ss_pred cHHHHHHHHHHHHHcCCEEEEEeeeccccCCCCCCCccccCCCCCccceeeCCCCCcccCCCCccccCCCCHHHHHHHHH
Q 003901 318 AINEFKLLVREAHKRGIEVVMDVVFNHTVEGNDKGPILSFRGVDNSVYYMLAPKGEFYNYSGCGNTFNCNHPVVRQFIVD 397 (788)
Q Consensus 318 ~~~elk~lV~~aH~~Gi~VilDvV~NH~~~~~~~~~~~~~~~~~~~~yy~~~~~g~~~~~~g~~~dln~~~p~vr~~i~d 397 (788)
--+||+-|.+.|++.|+.|++=+.+=+- .| ++++|. ..+.|+...+
T Consensus 34 Ey~Dl~l~L~~~k~~g~~~lfVi~PvNg------------------~w---------ydytG~-------~~~~r~~~y~ 79 (130)
T PF04914_consen 34 EYDDLQLLLDVCKELGIDVLFVIQPVNG------------------KW---------YDYTGL-------SKEMRQEYYK 79 (130)
T ss_dssp HHHHHHHHHHHHHHTT-EEEEEE----H------------------HH---------HHHTT---------HHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCceEEEecCCcH------------------HH---------HHHhCC-------CHHHHHHHHH
Confidence 3689999999999999999987664331 12 223332 3578899999
Q ss_pred HHHHHHHhcCc
Q 003901 398 CLRYWVTEMHV 408 (788)
Q Consensus 398 ~l~~W~~e~gV 408 (788)
-++.-++++|+
T Consensus 80 kI~~~~~~~gf 90 (130)
T PF04914_consen 80 KIKYQLKSQGF 90 (130)
T ss_dssp HHHHHHHTTT-
T ss_pred HHHHHHHHCCC
Confidence 99999988887
No 212
>KOG0259 consensus Tyrosine aminotransferase [Amino acid transport and metabolism]
Probab=29.40 E-value=64 Score=35.59 Aligned_cols=32 Identities=38% Similarity=0.565 Sum_probs=28.5
Q ss_pred cHHHHHHHHHHHHHcCCEEEEEeeeccccCCC
Q 003901 318 AINEFKLLVREAHKRGIEVVMDVVFNHTVEGN 349 (788)
Q Consensus 318 ~~~elk~lV~~aH~~Gi~VilDvV~NH~~~~~ 349 (788)
+.+-||++.+-||+.||-||-|=||.|+.-++
T Consensus 217 s~~HL~kiae~A~klgi~vIaDEVY~~~vfg~ 248 (447)
T KOG0259|consen 217 SEDHLKKIAETAKKLGIMVIADEVYGHTVFGD 248 (447)
T ss_pred cHHHHHHHHHHHHHhCCeEEehhhcceeecCC
Confidence 46779999999999999999999999996543
No 213
>PLN02803 beta-amylase
Probab=29.14 E-value=4.7e+02 Score=30.41 Aligned_cols=85 Identities=11% Similarity=0.132 Sum_probs=53.5
Q ss_pred CCeEEEEEeccCcccCCCCCCCCCcCH---HHHHhhhHHHHHcCCCeEEECcccccCccCcccCCCCCCCcccCCCCCCC
Q 003901 237 RDLIIYEVHVRGFTRHESSKTEHPGTY---LGVVEKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYNYSSAGIRN 313 (788)
Q Consensus 237 ~~~viYei~v~~Ft~~~~s~~~~~G~~---~gl~~~L~yLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~wgY~~~~~~~ 313 (788)
.-..+|-+.+-+.... .|++ +++...|..||.+||+.|-+ +|+ ||+-...-
T Consensus 84 ~~vpvyVMlPLd~V~~-------~~~~~~~~~l~~~L~~LK~~GVdGVmv-DVW----------------WGiVE~~~-- 137 (548)
T PLN02803 84 SGVPVFVMLPLDTVTM-------GGNLNKPRAMNASLMALRSAGVEGVMV-DAW----------------WGLVEKDG-- 137 (548)
T ss_pred CceeEEEEeecceecc-------CCcccCHHHHHHHHHHHHHcCCCEEEE-Eee----------------eeeeccCC--
Confidence 3456777766654321 2445 78899999999999999963 443 22211100
Q ss_pred CCCCcHHHHHHHHHHHHHcCCEEEEEeeeccccC
Q 003901 314 CGHDAINEFKLLVREAHKRGIEVVMDVVFNHTVE 347 (788)
Q Consensus 314 ~~~G~~~elk~lV~~aH~~Gi~VilDvV~NH~~~ 347 (788)
|+-=...-.++|++-+.+.|+||..=+-+.-.+.
T Consensus 138 p~~YdWsgY~~l~~mvr~~GLKlq~vmSFHqCGG 171 (548)
T PLN02803 138 PMKYNWEGYAELVQMVQKHGLKLQVVMSFHQCGG 171 (548)
T ss_pred CCcCCcHHHHHHHHHHHHcCCeEEEEEEecccCC
Confidence 0000245577888888899999988777765543
No 214
>PRK11194 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=28.69 E-value=2.6e+02 Score=31.20 Aligned_cols=69 Identities=14% Similarity=0.189 Sum_probs=46.2
Q ss_pred eEEEEEeccCcccCCCCCCCCCcCHHHHHhhhHHHHHcCCCeEEECcccccCccCcccCCCCCCCcccCCCCCCCCCCCc
Q 003901 239 LIIYEVHVRGFTRHESSKTEHPGTYLGVVEKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYNYSSAGIRNCGHDA 318 (788)
Q Consensus 239 ~viYei~v~~Ft~~~~s~~~~~G~~~gl~~~L~yLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~wgY~~~~~~~~~~G~ 318 (788)
.+|=-+.+.+++++ -..+.+-.+.|+.+++ .|.|+|.++.... .|.. -+
T Consensus 263 I~irypLIpGvNDs----------~e~a~~La~ll~~l~~-~VnLIPYN~~~~~------------~~~~--------ps 311 (372)
T PRK11194 263 VTVEYVMLDHVNDG----------TEHAHQLAELLKDTPC-KINLIPWNPFPGA------------PYGR--------SS 311 (372)
T ss_pred EEEEEEeECCCCCC----------HHHHHHHHHHHhcCCc-eEEEecCCCCCCC------------CCCC--------CC
Confidence 33334578888773 3444444577888876 9999998864321 1211 24
Q ss_pred HHHHHHHHHHHHHcCCEEEE
Q 003901 319 INEFKLLVREAHKRGIEVVM 338 (788)
Q Consensus 319 ~~elk~lV~~aH~~Gi~Vil 338 (788)
.++++++.+.+.++||.|.+
T Consensus 312 ~e~v~~f~~~L~~~Gi~vti 331 (372)
T PRK11194 312 NSRIDRFSKVLMEYGFTVIV 331 (372)
T ss_pred HHHHHHHHHHHHHCCCeEEE
Confidence 77888999999999999964
No 215
>PRK14457 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=28.42 E-value=2.6e+02 Score=30.90 Aligned_cols=67 Identities=16% Similarity=0.329 Sum_probs=45.4
Q ss_pred EEEE-EeccCcccCCCCCCCCCcCHHHHHhhhHHHHHcCCCeEEECcccccCccCcccCCCCCCCcccCCCCCCCCCCCc
Q 003901 240 IIYE-VHVRGFTRHESSKTEHPGTYLGVVEKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYNYSSAGIRNCGHDA 318 (788)
Q Consensus 240 viYe-i~v~~Ft~~~~s~~~~~G~~~gl~~~L~yLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~wgY~~~~~~~~~~G~ 318 (788)
|..| +.+.++.++ -..+.+-...|+.+++ .|.|+|.+..+.. .|.+ -+
T Consensus 256 I~iey~LIpGvNDs----------~e~a~~La~~l~~l~~-~VnLIPynp~~~~------------~~~~--------ps 304 (345)
T PRK14457 256 VSFEYILLGGVNDL----------PEHAEELANLLRGFQS-HVNLIPYNPIDEV------------EFQR--------PS 304 (345)
T ss_pred EEEEEEEECCcCCC----------HHHHHHHHHHHhcCCC-eEEEecCCCCCCC------------CCCC--------CC
Confidence 4444 467777663 3444444577888876 7999998775321 1221 25
Q ss_pred HHHHHHHHHHHHHcCCEEE
Q 003901 319 INEFKLLVREAHKRGIEVV 337 (788)
Q Consensus 319 ~~elk~lV~~aH~~Gi~Vi 337 (788)
.++++++.+.+.++||.|.
T Consensus 305 ~e~i~~f~~~L~~~Gi~vt 323 (345)
T PRK14457 305 PKRIQAFQRVLEQRGVAVS 323 (345)
T ss_pred HHHHHHHHHHHHHCCCeEE
Confidence 7889999999999999985
No 216
>cd00384 ALAD_PBGS Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. They either contain a cysteine-rich zinc binding site (consensus DXCXCX(Y/F)X3G(H/Q)CG) or an aspartate-rich magnesium binding site (consensus DXALDX(Y/F)X3G(H/Q)DG). The cyste
Probab=28.25 E-value=4.5e+02 Score=28.38 Aligned_cols=107 Identities=16% Similarity=0.180 Sum_probs=63.3
Q ss_pred CCcCHHHHHhhhHHHHHcCCCeEEECcccccCccCcccCCCCCCCcccCCCCCCCCCCCcHHHHHHHHHHHHH--cCCEE
Q 003901 259 HPGTYLGVVEKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYNYSSAGIRNCGHDAINEFKLLVREAHK--RGIEV 336 (788)
Q Consensus 259 ~~G~~~gl~~~L~yLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~wgY~~~~~~~~~~G~~~elk~lV~~aH~--~Gi~V 336 (788)
++=+...+.+.+..+.++||.+|-|-|+-+. .+..+. -.|++. |- +.+.|+++++ -.|-|
T Consensus 46 ~r~s~d~l~~~~~~~~~~Gi~~v~LFgv~~~--Kd~~gs------~A~~~~-------g~---v~~air~iK~~~p~l~v 107 (314)
T cd00384 46 YRLSVDSLVEEAEELADLGIRAVILFGIPEH--KDEIGS------EAYDPD-------GI---VQRAIRAIKEAVPELVV 107 (314)
T ss_pred eeeCHHHHHHHHHHHHHCCCCEEEEECCCCC--CCCCcc------cccCCC-------Ch---HHHHHHHHHHhCCCcEE
Confidence 3446788999999999999999999999321 121111 123322 22 3344444444 38999
Q ss_pred EEEeeeccccCCCCCCCccccCCCCCccceeeCCCCCcccCCCCccccCCCCHHHHHHHHHHHHHHHHhcCccEE
Q 003901 337 VMDVVFNHTVEGNDKGPILSFRGVDNSVYYMLAPKGEFYNYSGCGNTFNCNHPVVRQFIVDCLRYWVTEMHVDGF 411 (788)
Q Consensus 337 ilDvV~NH~~~~~~~~~~~~~~~~~~~~yy~~~~~g~~~~~~g~~~dln~~~p~vr~~i~d~l~~W~~e~gVDGF 411 (788)
|-||.+......+..+ -..+ + .-.|.+..+.+.+...-.. +-|.|-.
T Consensus 108 i~DvcLc~YT~hGHcG--------------------il~~----~---~idND~Tl~~L~k~Als~A-~AGADiV 154 (314)
T cd00384 108 ITDVCLCEYTDHGHCG--------------------ILKD----D---YVDNDATLELLAKIAVSHA-EAGADIV 154 (314)
T ss_pred EEeeeccCCCCCCcce--------------------eccC----C---cCccHHHHHHHHHHHHHHH-HcCCCee
Confidence 9999987653322111 1100 0 1235566777777776777 7788754
No 217
>COG1874 LacA Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=28.17 E-value=1e+02 Score=37.04 Aligned_cols=61 Identities=15% Similarity=0.103 Sum_probs=40.9
Q ss_pred HHHHhhhHHHHHcCCCeEEECcccccCccCcccCCCCCCCcccCCCCCCCCCCCcHHHHHHHHHHHHHcCCEEEEEeee
Q 003901 264 LGVVEKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYNYSSAGIRNCGHDAINEFKLLVREAHKRGIEVVMDVVF 342 (788)
Q Consensus 264 ~gl~~~L~yLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~wgY~~~~~~~~~~G~~~elk~lV~~aH~~Gi~VilDvV~ 342 (788)
..+.+.|.-.|++|+|+|.+..+.-.--... .+. | .++ ..|.. +++.|++.||.|||==.+
T Consensus 30 ~~w~ddl~~mk~~G~N~V~ig~faW~~~eP~---eG~-----f--------df~-~~D~~-~l~~a~~~Gl~vil~t~P 90 (673)
T COG1874 30 ETWMDDLRKMKALGLNTVRIGYFAWNLHEPE---EGK-----F--------DFT-WLDEI-FLERAYKAGLYVILRTGP 90 (673)
T ss_pred HHHHHHHHHHHHhCCCeeEeeeEEeeccCcc---ccc-----c--------Ccc-cchHH-HHHHHHhcCceEEEecCC
Confidence 5678889999999999999866643211000 001 1 234 34444 899999999999986554
No 218
>PF00232 Glyco_hydro_1: Glycosyl hydrolase family 1; InterPro: IPR001360 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 1 GH1 from CAZY comprises enzymes with a number of known activities; beta-glucosidase (3.2.1.21 from EC); beta-galactosidase (3.2.1.23 from EC); 6-phospho-beta-galactosidase (3.2.1.85 from EC); 6-phospho-beta-glucosidase (3.2.1.86 from EC); lactase-phlorizin hydrolase (3.2.1.62 from EC), (3.2.1.108 from EC); beta-mannosidase (3.2.1.25 from EC); myrosinase (3.2.1.147 from EC). ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1QVB_A 3AHY_D 2E9L_A 2ZOX_A 2JFE_X 2E9M_A 3FIZ_A 3FIY_A 3CMJ_A 3FJ0_A ....
Probab=28.08 E-value=85 Score=36.06 Aligned_cols=101 Identities=14% Similarity=0.210 Sum_probs=60.3
Q ss_pred CcCHHHHHhhhHHHHHcCCCeEEECcccccCccCcccCCCCCCCcccCCCC-CCCCCCCcHHHHHHHHHHHHHcCCEEEE
Q 003901 260 PGTYLGVVEKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYNYSSAG-IRNCGHDAINEFKLLVREAHKRGIEVVM 338 (788)
Q Consensus 260 ~G~~~gl~~~L~yLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~wgY~~~~-~~~~~~G~~~elk~lV~~aH~~Gi~Vil 338 (788)
.--|.-..+.|+.+|+||+|+.-++--+.- ..+.+ .-...--..+=.++||++|.++||+.|+
T Consensus 54 ~d~y~~y~eDi~l~~~lg~~~yRfsi~W~R----------------i~P~g~~g~~n~~~~~~Y~~~i~~l~~~gi~P~v 117 (455)
T PF00232_consen 54 CDHYHRYKEDIALMKELGVNAYRFSISWSR----------------IFPDGFEGKVNEEGLDFYRDLIDELLENGIEPIV 117 (455)
T ss_dssp TGHHHHHHHHHHHHHHHT-SEEEEE--HHH----------------HSTTSSSSSS-HHHHHHHHHHHHHHHHTT-EEEE
T ss_pred ccchhhhhHHHHHHHhhccceeeeecchhh----------------eeecccccccCHhHhhhhHHHHHHHHhhccceee
Confidence 345778889999999999999887543321 11110 0000112466689999999999999998
Q ss_pred EeeeccccCCCCCCCccccCCCCCccceeeCCCCCcccCCCCccccCCCCHHHHHHHHHHHHHHHHhcC
Q 003901 339 DVVFNHTVEGNDKGPILSFRGVDNSVYYMLAPKGEFYNYSGCGNTFNCNHPVVRQFIVDCLRYWVTEMH 407 (788)
Q Consensus 339 DvV~NH~~~~~~~~~~~~~~~~~~~~yy~~~~~g~~~~~~g~~~dln~~~p~vr~~i~d~l~~W~~e~g 407 (788)
-+ .|.. -+.|... .| -+.++++.+.+.+-+++-+++||
T Consensus 118 tL--~H~~---------------~P~~l~~--~g------------gw~~~~~~~~F~~Ya~~~~~~~g 155 (455)
T PF00232_consen 118 TL--YHFD---------------LPLWLED--YG------------GWLNRETVDWFARYAEFVFERFG 155 (455)
T ss_dssp EE--ESS-----------------BHHHHH--HT------------GGGSTHHHHHHHHHHHHHHHHHT
T ss_pred ee--eecc---------------cccceee--cc------------cccCHHHHHHHHHHHHHHHHHhC
Confidence 66 4642 1122211 11 12346777888888888887776
No 219
>cd03412 CbiK_N Anaerobic cobalamin biosynthetic cobalt chelatase (CbiK), N-terminal domain. CbiK is part of the cobalt-early path for cobalamin biosynthesis. It catalyzes the insertion of cobalt into the oxidized form of precorrin-2, factor II (sirohydrochlorin), the second step of the anaerobic branch of vitamin B12 biosynthesis. CbiK belongs to the class II family of chelatases and is a homomeric enzyme that does not require ATP for its enzymatic activity.
Probab=27.94 E-value=1.2e+02 Score=28.18 Aligned_cols=30 Identities=17% Similarity=-0.010 Sum_probs=25.2
Q ss_pred HHHHHhhhHHHHHcCCCeEEECcccccCcc
Q 003901 263 YLGVVEKLDHLKDLGINCLELMPCHEFNEL 292 (788)
Q Consensus 263 ~~gl~~~L~yLk~LGvt~I~L~Pi~~~~~~ 292 (788)
...+.+.|+.|.+.|++.|.+.|.+=+++.
T Consensus 55 ~p~~~eaL~~l~~~G~~~V~V~Pl~l~~G~ 84 (127)
T cd03412 55 VDTPEEALAKLAADGYTEVIVQSLHIIPGE 84 (127)
T ss_pred CCCHHHHHHHHHHCCCCEEEEEeCeeECcH
Confidence 345678899999999999999999987653
No 220
>PRK06256 biotin synthase; Validated
Probab=27.34 E-value=86 Score=34.27 Aligned_cols=60 Identities=15% Similarity=0.165 Sum_probs=42.4
Q ss_pred HhhhHHHHHcCCCeEEECcccccCccCcccCCCCCCCcccCCCCCCCCCCCcHHHHHHHHHHHHHcCCEEEEEeeecc
Q 003901 267 VEKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYNYSSAGIRNCGHDAINEFKLLVREAHKRGIEVVMDVVFNH 344 (788)
Q Consensus 267 ~~~L~yLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~wgY~~~~~~~~~~G~~~elk~lV~~aH~~Gi~VilDvV~NH 344 (788)
.+.+..||+.|++.|.+.. +. +... |.. +.+ -.+.++..+.++.||+.||+|...+++.+
T Consensus 152 ~e~l~~LkeaG~~~v~~~l--Et-s~~~-----------~~~---i~~-~~t~~~~i~~i~~a~~~Gi~v~~~~I~Gl 211 (336)
T PRK06256 152 EEQAERLKEAGVDRYNHNL--ET-SRSY-----------FPN---VVT-THTYEDRIDTCEMVKAAGIEPCSGGIIGM 211 (336)
T ss_pred HHHHHHHHHhCCCEEecCC--cc-CHHH-----------Hhh---cCC-CCCHHHHHHHHHHHHHcCCeeccCeEEeC
Confidence 3567899999999997742 32 1110 111 122 24789999999999999999999888876
No 221
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=27.18 E-value=1.1e+02 Score=32.45 Aligned_cols=54 Identities=17% Similarity=0.131 Sum_probs=37.0
Q ss_pred HHHHhhhHHHHHcCCCeEEECcccccCccCcccCCCCCCCcccCCCCCCCCCCCcHHHHHHHHHHHHHcCCEEE
Q 003901 264 LGVVEKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYNYSSAGIRNCGHDAINEFKLLVREAHKRGIEVV 337 (788)
Q Consensus 264 ~gl~~~L~yLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~wgY~~~~~~~~~~G~~~elk~lV~~aH~~Gi~Vi 337 (788)
..+.+.|+.++++|+++|+|.+- .... . +++.--+..++++|.+.+.++||+|.
T Consensus 16 ~~~~e~l~~~~~~G~~~VEl~~~-~~~~-------------~------~~~~~~~~~~~~~~~~~l~~~gl~i~ 69 (279)
T TIGR00542 16 ECWLERLQLAKTCGFDFVEMSVD-ETDD-------------R------LSRLDWSREQRLALVNAIIETGVRIP 69 (279)
T ss_pred CCHHHHHHHHHHcCCCEEEEecC-Cccc-------------h------hhccCCCHHHHHHHHHHHHHcCCCce
Confidence 34778899999999999999532 1100 0 00001146788888889999999985
No 222
>PLN02635 disproportionating enzyme
Probab=27.14 E-value=94 Score=36.40 Aligned_cols=32 Identities=19% Similarity=0.142 Sum_probs=27.4
Q ss_pred CCCcCHHHHH-hhhHHHHHcCCCeEEECccccc
Q 003901 258 EHPGTYLGVV-EKLDHLKDLGINCLELMPCHEF 289 (788)
Q Consensus 258 ~~~G~~~gl~-~~L~yLk~LGvt~I~L~Pi~~~ 289 (788)
...|||.... +-++.+++.|.+.++|+|++..
T Consensus 43 ~GIGDfg~~a~~fvd~la~~G~~~wQilPL~pt 75 (538)
T PLN02635 43 YGIGDLGDEAFRFLDWLASTGCSVWQVLPLVPP 75 (538)
T ss_pred CCCcchHHHHHHHHHHHHHcCCCEEEEcCCCCC
Confidence 4479998766 6779999999999999999774
No 223
>PF00218 IGPS: Indole-3-glycerol phosphate synthase; InterPro: IPR013798 Indole-3-glycerol phosphate synthase (4.1.1.48 from EC) (IGPS) catalyses the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyses N-(5'-phosphoribosyl)anthranilate isomerase (5.3.1.24 from EC) (PRAI) activity (see IPR001240 from INTERPRO), the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (2.4.2 from EC) (GATase) N-terminal domain (see IPR000991 from INTERPRO). A structure of the IGPS domain of the bifunctional enzyme from the mesophilic bacterium E. coli (eIGPS) has been compared with the monomeric indole-3-glycerol phosphate synthase from the hyperthermophilic archaeon Sulfolobus solfataricus (sIGPS). Both are single-domain (beta/alpha)8 barrel proteins, with one (eIGPS) or two (sIGPS) additional helices inserted before the first beta strand []. ; GO: 0004425 indole-3-glycerol-phosphate synthase activity; PDB: 1VC4_A 1PII_A 1JCM_P 1I4N_B 1J5T_A 3TSM_B 4FB7_A 3QJA_A 1JUL_A 2C3Z_A ....
Probab=26.76 E-value=1.4e+02 Score=31.46 Aligned_cols=42 Identities=19% Similarity=0.351 Sum_probs=31.2
Q ss_pred hHHHHHcCCCeEEECcccccCccCcccCCCCCCCcccCCCCCCCCCCCcHHHHHHHHHHHHHcCCEEEEEe
Q 003901 270 LDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYNYSSAGIRNCGHDAINEFKLLVREAHKRGIEVVMDV 340 (788)
Q Consensus 270 L~yLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~wgY~~~~~~~~~~G~~~elk~lV~~aH~~Gi~VilDv 340 (788)
+..-+.+|.++|.|+--.= +.++|++|++.||+.||.+++.|
T Consensus 124 I~eA~~~GADaVLLI~~~L-----------------------------~~~~l~~l~~~a~~lGle~lVEV 165 (254)
T PF00218_consen 124 IYEARAAGADAVLLIAAIL-----------------------------SDDQLEELLELAHSLGLEALVEV 165 (254)
T ss_dssp HHHHHHTT-SEEEEEGGGS-----------------------------GHHHHHHHHHHHHHTT-EEEEEE
T ss_pred HHHHHHcCCCEeehhHHhC-----------------------------CHHHHHHHHHHHHHcCCCeEEEE
Confidence 4556678888888754221 36779999999999999999997
No 224
>cd05808 CBM20_alpha_amylase Alpha-amylase, C-terminal CBM20 (carbohydrate-binding module, family 20) domain. This domain is found in several bacterial and fungal alpha-amylases including the maltopentaose-forming amylases (G5-amylases). Most alpha-amylases have, in addition to the C-terminal CBM20 domain, an N-terminal catalytic domain belonging to glycosyl hydrolase family 13, which hydrolyzes internal alpha-1,4-glucosidic bonds in starch and related saccharides, yielding maltotriose and maltose. Two types of soluble substrates are used by alpha-amylases including long substrates (e.g. amylose) and short substrates (e.g. maltodextrins or maltooligosaccharides). The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. lafo
Probab=26.47 E-value=1.2e+02 Score=26.25 Aligned_cols=59 Identities=17% Similarity=0.218 Sum_probs=35.0
Q ss_pred EEEEEEcCC--CCEEEEEEEeCCCccCCceeeEEecccccCCCCCEEEEEEcCC-CCCceeeEEEc
Q 003901 107 VNFSIFSSN--AVSATLCLITLSDLQENKVTEEIALDSFANKTGDVWHVFLKGD-FKDMLYGYKFD 169 (788)
Q Consensus 107 ~~F~vwap~--A~~V~L~l~~~~d~~~~~~~~~~~l~~~~~~~~gvW~~~i~~~-~~~~~Y~y~~~ 169 (788)
++|+|-... .++|.|+- ...++++|.+...++|.. ..++.|++.+.-. .....|+|.+.
T Consensus 3 v~F~v~~~t~~ge~l~v~G-~~~~lG~W~~~~a~~l~~---~~~~~W~~~v~l~~~~~~eYKy~~~ 64 (95)
T cd05808 3 VTFNVTATTVWGQNVYVVG-NVPELGNWSPANAVALSA---ATYPVWSGTVDLPAGTAIEYKYIKK 64 (95)
T ss_pred EEEEEEEECCCCCEEEEEe-CcHHhCCCChhhCccCCC---CCCCCEEEEEEeCCCCeEEEEEEEE
Confidence 677776643 45666651 112466787666667743 3568998886432 23467777653
No 225
>PLN02161 beta-amylase
Probab=26.41 E-value=5.2e+02 Score=29.94 Aligned_cols=88 Identities=11% Similarity=0.118 Sum_probs=52.1
Q ss_pred CeEEEEEeccC-cccCCCCCCCCCcCHHHHHhhhHHHHHcCCCeEEECcccccCccCcccCCCCCCCcccCCCCCCCCCC
Q 003901 238 DLIIYEVHVRG-FTRHESSKTEHPGTYLGVVEKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYNYSSAGIRNCGH 316 (788)
Q Consensus 238 ~~viYei~v~~-Ft~~~~s~~~~~G~~~gl~~~L~yLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~wgY~~~~~~~~~~ 316 (788)
...+|=+.+-+ .+.+ .++....-+.+.+...|..||.+||+.|-+ +|+ ||+-...- |.-
T Consensus 91 ~vpvyVMlPLD~V~~~-~~~~~~v~~~~al~~~L~~LK~~GVdGVmv-DVW----------------WGiVE~~~--p~~ 150 (531)
T PLN02161 91 RVPVFVMMPVDTFGID-ASGCPKIKRLKALTVSLKALKLAGVHGIAV-EVW----------------WGIVERFS--PLE 150 (531)
T ss_pred CeeEEEEeecceeccC-cccccccCCHHHHHHHHHHHHHcCCCEEEE-Eee----------------eeeeecCC--CCc
Confidence 44566655543 3321 111112356778899999999999999964 433 22211100 000
Q ss_pred CcHHHHHHHHHHHHHcCCEEEEEeeeccc
Q 003901 317 DAINEFKLLVREAHKRGIEVVMDVVFNHT 345 (788)
Q Consensus 317 G~~~elk~lV~~aH~~Gi~VilDvV~NH~ 345 (788)
=...-.++|++-+.+.|+||..=+-+.-.
T Consensus 151 YdWsgY~~l~~mvr~~GLKlq~vmSFHqC 179 (531)
T PLN02161 151 FKWSLYEELFRLISEAGLKLHVALCFHSN 179 (531)
T ss_pred CCcHHHHHHHHHHHHcCCeEEEEEEeccc
Confidence 02455788888888999999887777544
No 226
>TIGR01496 DHPS dihydropteroate synthase. This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284.
Probab=26.23 E-value=2.8e+02 Score=29.20 Aligned_cols=74 Identities=9% Similarity=0.081 Sum_probs=47.9
Q ss_pred EEEEeccCcccCCCCCCCCCcCHHHHHhhhHHHHHcCCCeEEECcccccCccCcccCCCCCCCcccCCCCCCCCCCCcHH
Q 003901 241 IYEVHVRGFTRHESSKTEHPGTYLGVVEKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYNYSSAGIRNCGHDAIN 320 (788)
Q Consensus 241 iYei~v~~Ft~~~~s~~~~~G~~~gl~~~L~yLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~wgY~~~~~~~~~~G~~~ 320 (788)
|-.+-+++|+++-- .-+...+.++.....+-|.+.|=+......+ +. ......+
T Consensus 5 ilN~tpdSF~dg~~-----~~~~~~~~~~a~~~~~~GA~iIDIG~~st~p--------------~~-------~~i~~~~ 58 (257)
T TIGR01496 5 IVNVTPDSFSDGGR-----FLSVDKAVAHAERMLEEGADIIDVGGESTRP--------------GA-------DRVSPEE 58 (257)
T ss_pred EEeCCCCCCCCCCC-----CCCHHHHHHHHHHHHHCCCCEEEECCCCCCC--------------CC-------CCCCHHH
Confidence 45677899988310 1234677778888888999999884322111 00 0122344
Q ss_pred H---HHHHHHHHHHc-CCEEEEEe
Q 003901 321 E---FKLLVREAHKR-GIEVVMDV 340 (788)
Q Consensus 321 e---lk~lV~~aH~~-Gi~VilDv 340 (788)
| ++.+|+++++. ++.|.+|-
T Consensus 59 E~~rl~~~v~~~~~~~~~plsiDT 82 (257)
T TIGR01496 59 ELNRVVPVIKALRDQPDVPISVDT 82 (257)
T ss_pred HHHHHHHHHHHHHhcCCCeEEEeC
Confidence 5 88888999988 99888884
No 227
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=25.88 E-value=1.7e+02 Score=33.78 Aligned_cols=29 Identities=21% Similarity=0.314 Sum_probs=25.7
Q ss_pred cHHHHHHHHHHHHHcCCEEEEEeeecccc
Q 003901 318 AINEFKLLVREAHKRGIEVVMDVVFNHTV 346 (788)
Q Consensus 318 ~~~elk~lV~~aH~~Gi~VilDvV~NH~~ 346 (788)
+.++..+.++.||+.||.|..++++..-+
T Consensus 321 ~~~~~~~~i~~~~~~Gi~v~~~~IiGlPg 349 (472)
T TIGR03471 321 TVEIARRFTRDCHKLGIKVHGTFILGLPG 349 (472)
T ss_pred CHHHHHHHHHHHHHCCCeEEEEEEEeCCC
Confidence 67899999999999999999999987643
No 228
>COG1809 (2R)-phospho-3-sulfolactate synthase (PSL synthase, CoM biosynthesis) [Coenzyme transport and metabolism]
Probab=25.81 E-value=1.3e+02 Score=30.78 Aligned_cols=46 Identities=24% Similarity=0.293 Sum_probs=34.7
Q ss_pred HhhhHHHHHcCCCeEEECcccccCccCcccCCCCCCCcccCCCCCCCCCCCcHHHHHHHHHHHHHcCCEEEEE
Q 003901 267 VEKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYNYSSAGIRNCGHDAINEFKLLVREAHKRGIEVVMD 339 (788)
Q Consensus 267 ~~~L~yLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~wgY~~~~~~~~~~G~~~elk~lV~~aH~~Gi~VilD 339 (788)
-+-|.++++||+++|+++-=+- + =+.++.++||+.+-+.|..|.-.
T Consensus 93 deyl~e~~~lGfe~iEIS~G~i-------------------~--------m~~eek~~lIe~a~d~Gf~vlsE 138 (258)
T COG1809 93 DEYLNEAKELGFEAIEISNGTI-------------------P--------MSTEEKCRLIERAVDEGFMVLSE 138 (258)
T ss_pred HHHHHHHHHcCccEEEecCCee-------------------e--------cchHHHHHHHHHHHhcccEEehh
Confidence 3457889999999999753111 0 14789999999999999988643
No 229
>PRK14462 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=25.78 E-value=3e+02 Score=30.56 Aligned_cols=69 Identities=4% Similarity=0.146 Sum_probs=46.4
Q ss_pred eEEEEEeccCcccCCCCCCCCCcCHHHHHhhhHHHHHcCCCeEEECcccccCccCcccCCCCCCCcccCCCCCCCCCCCc
Q 003901 239 LIIYEVHVRGFTRHESSKTEHPGTYLGVVEKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYNYSSAGIRNCGHDA 318 (788)
Q Consensus 239 ~viYei~v~~Ft~~~~s~~~~~G~~~gl~~~L~yLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~wgY~~~~~~~~~~G~ 318 (788)
..|=-+.+.+++++ ...+.+-.+.|+.+++ .|.|.|.++.... .|.. -+
T Consensus 264 i~ieyvLI~GvNDs----------~e~a~~La~llk~l~~-~VnLIPyn~~~~~------------~~~~--------ps 312 (356)
T PRK14462 264 VMFEYLVIKDVNDD----------LKSAKKLVKLLNGIKA-KVNLILFNPHEGS------------KFER--------PS 312 (356)
T ss_pred EEEEEEEECCCCCC----------HHHHHHHHHHHhhcCc-EEEEEeCCCCCCC------------CCCC--------CC
Confidence 34444678888773 3455555688888886 8999998764321 1111 14
Q ss_pred HHHHHHHHHHHHHcCCEEEE
Q 003901 319 INEFKLLVREAHKRGIEVVM 338 (788)
Q Consensus 319 ~~elk~lV~~aH~~Gi~Vil 338 (788)
.++++++.+.+.++||.|.+
T Consensus 313 ~e~i~~f~~~l~~~gi~vtv 332 (356)
T PRK14462 313 LEDMIKFQDYLNSKGLLCTI 332 (356)
T ss_pred HHHHHHHHHHHHHCCCcEEE
Confidence 67788888889999998854
No 230
>COG2200 Rtn c-di-GMP phosphodiesterase class I (EAL domain) [Signal transduction mechanisms]
Probab=25.61 E-value=1.1e+02 Score=31.98 Aligned_cols=86 Identities=17% Similarity=0.202 Sum_probs=48.4
Q ss_pred eEEEEEeccCcccCCCCCCCCCcCHHHHHhhhHHHHHcCCCeEEECcccccCccCcccCCCCCCCc-ccCCC----C--C
Q 003901 239 LIIYEVHVRGFTRHESSKTEHPGTYLGVVEKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDY-NYSSA----G--I 311 (788)
Q Consensus 239 ~viYei~v~~Ft~~~~s~~~~~G~~~gl~~~L~yLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~w-gY~~~----~--~ 311 (788)
.++.|+-=+.. ..+...+...+..|+++||.-- +=+|++... ..+|. .+.+. | +
T Consensus 121 ~l~lEitE~~~----------~~~~~~~~~~l~~L~~~G~~ia----lDDFGtG~s-----sl~~L~~l~~d~iKID~~f 181 (256)
T COG2200 121 RLVLEITESAL----------IDDLDTALALLRQLRELGVRIA----LDDFGTGYS-----SLSYLKRLPPDILKIDRSF 181 (256)
T ss_pred eEEEEEeCchh----------hcCHHHHHHHHHHHHHCCCeEE----EECCCCCHH-----HHHHHhhCCCCeEEECHHH
Confidence 68888766543 2345566777888888887433 223322110 00000 00000 0 0
Q ss_pred ---CCCCCCcHHHHHHHHHHHHHcCCEEEEEeeec
Q 003901 312 ---RNCGHDAINEFKLLVREAHKRGIEVVMDVVFN 343 (788)
Q Consensus 312 ---~~~~~G~~~elk~lV~~aH~~Gi~VilDvV~N 343 (788)
++.......=++.+|+-||+.||+||...|=+
T Consensus 182 i~~i~~~~~~~~iv~~iv~la~~l~~~vvaEGVEt 216 (256)
T COG2200 182 VRDLETDARDQAIVRAIVALAHKLGLTVVAEGVET 216 (256)
T ss_pred HhhcccCcchHHHHHHHHHHHHHCCCEEEEeecCC
Confidence 12222334569999999999999999998843
No 231
>PLN02801 beta-amylase
Probab=25.29 E-value=2.8e+02 Score=31.96 Aligned_cols=67 Identities=12% Similarity=0.190 Sum_probs=44.1
Q ss_pred CHHHHHhhhHHHHHcCCCeEEECcccccCccCcccCCCCCCCcccCCCCCCCCCCCcHHHHHHHHHHHHHcCCEEEEEee
Q 003901 262 TYLGVVEKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYNYSSAGIRNCGHDAINEFKLLVREAHKRGIEVVMDVV 341 (788)
Q Consensus 262 ~~~gl~~~L~yLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~wgY~~~~~~~~~~G~~~elk~lV~~aH~~Gi~VilDvV 341 (788)
+-+++...|..||.+||+.|-+ +|+ ||.-...- |+-=...-.++|++-+++.|++|..=+-
T Consensus 35 ~~~~l~~~L~~LK~~GVdGVmv-DVW----------------WGiVE~~~--P~~YdWsgY~~l~~mvr~~GLKlq~vmS 95 (517)
T PLN02801 35 DEEGLEKQLKRLKEAGVDGVMV-DVW----------------WGIVESKG--PKQYDWSAYRSLFELVQSFGLKIQAIMS 95 (517)
T ss_pred CHHHHHHHHHHHHHcCCCEEEE-eee----------------eeeeccCC--CCccCcHHHHHHHHHHHHcCCeEEEEEE
Confidence 4567889999999999999964 333 22211100 0000245578888888899999988777
Q ss_pred eccccC
Q 003901 342 FNHTVE 347 (788)
Q Consensus 342 ~NH~~~ 347 (788)
+.-++.
T Consensus 96 FHqCGG 101 (517)
T PLN02801 96 FHQCGG 101 (517)
T ss_pred ecccCC
Confidence 765543
No 232
>PF03711 OKR_DC_1_C: Orn/Lys/Arg decarboxylase, C-terminal domain; InterPro: IPR008286 Pyridoxal-dependent decarboxylases are bacterial proteins acting on ornithine, lysine, arginine and related substrates []. One of the regions of sequence similarity contains a conserved lysine residue, which is the site of attachment of the pyridoxal-phosphate group.; GO: 0003824 catalytic activity; PDB: 1C4K_A 1ORD_A 3Q16_C 3N75_A 2X3L_A 2VYC_D.
Probab=25.29 E-value=72 Score=30.11 Aligned_cols=37 Identities=14% Similarity=0.412 Sum_probs=26.9
Q ss_pred CCceEEecccccccCCCCCCCCcCCCCCccccccCcccCcchHHHHHHHHHHHHHhhCccCC
Q 003901 607 QGVPMISMGDEYGHTKGGNNNTYCHDNDINYFRWDKKEESKSDFFRFCCLLTKFRHECESLG 668 (788)
Q Consensus 607 pGiP~Iy~GdE~G~~~~g~~n~y~~~~~~~~~~W~~~~~~~~~l~~~~r~Li~lRk~~~aL~ 668 (788)
||||+|.-|+.+... . ..+.+|++.|-++-+..|.|.
T Consensus 87 PGIPll~pGE~it~~------------------------~-~~~i~yl~~l~~~~~~fpGf~ 123 (136)
T PF03711_consen 87 PGIPLLVPGERITEE------------------------T-EEIIDYLLALQEFGAHFPGFE 123 (136)
T ss_dssp TTS-SB-TTEEB-ST------------------------T-HHHHHHHHHHHHHHTCSTTS-
T ss_pred CCCcEECCccccccc------------------------h-HHHHHHHHHHHHhCCcCcCCC
Confidence 699999999997542 1 678899999988888887775
No 233
>cd06548 GH18_chitinase The GH18 (glycosyl hydrolases, family 18) type II chitinases hydrolyze chitin, an abundant polymer of N-acetylglucosamine and have been identified in bacteria, fungi, insects, plants, viruses, and protozoan parasites. The structure of this domain is an eight-stranded alpha/beta barrel with a pronounced active-site cleft at the C-terminal end of the beta-barrel.
Probab=25.04 E-value=80 Score=34.35 Aligned_cols=29 Identities=17% Similarity=0.258 Sum_probs=25.7
Q ss_pred CCHHHHHHHHHHHHHHHHhcCccEEEEec
Q 003901 387 NHPVVRQFIVDCLRYWVTEMHVDGFRFDL 415 (788)
Q Consensus 387 ~~p~vr~~i~d~l~~W~~e~gVDGFR~D~ 415 (788)
.++..|+.+++++..|++++|+||+-+|-
T Consensus 105 ~~~~~r~~Fi~siv~~l~~~~fDGidiDw 133 (322)
T cd06548 105 ATEASRAKFADSAVDFIRKYGFDGIDIDW 133 (322)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCeEEECC
Confidence 35778999999999999999999999984
No 234
>PLN02692 alpha-galactosidase
Probab=24.72 E-value=1.7e+02 Score=33.05 Aligned_cols=72 Identities=14% Similarity=0.026 Sum_probs=45.5
Q ss_pred CcEEEEEEEcCCCCEEEEEEeCCCCcEEEECCCC----CC-C--CeEEEecCCCCCCCCccCCC-CchhhhhhhhcCCCC
Q 003901 694 SRFVAFTLIDSVKGEIYVAFNASHLPVIISLPKR----PG-Y--RWEPLVDTSKPEPFDFLSSD-LPAKEIAIKQYAPFL 765 (788)
Q Consensus 694 ~~vlaf~r~~~~~~~i~Vv~N~~~~~~~v~Lp~~----~g-~--~w~~l~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 765 (788)
..+-++.+...++..+++++|.++.++++.++.. .+ . ..++|- +.. +.. . ..
T Consensus 332 ~~~~vW~k~l~~g~~aVal~N~~~~~~~i~~~~~~lgl~~~~~~~vrDLW-----------~~~~~g~-~--------~~ 391 (412)
T PLN02692 332 GDLEIWAGPLSGYRVALLLLNRGPWRNSITANWDDIGIPANSIVEARDLW-----------EHKTLKQ-H--------FV 391 (412)
T ss_pred CCeEEEEEECCCCCEEEEEEECCCCCEEEEEeHHHhCCCCCCceEEEECC-----------CCCccCc-c--------cc
Confidence 4577787776665678999999998888876631 11 1 122222 211 000 0 12
Q ss_pred CCeeEEeeCCeEEEEEecCC
Q 003901 766 DANLYPMLSYSSIILLLSPD 785 (788)
Q Consensus 766 ~~~~~~v~~~s~~vl~~~~~ 785 (788)
+..+.+|||..+++|..+++
T Consensus 392 ~~~~~~v~~Hg~~l~rl~~~ 411 (412)
T PLN02692 392 GNLTATVDSHACKMYILKPI 411 (412)
T ss_pred ceEEEEECCceEEEEEEecC
Confidence 34578999999999999875
No 235
>PRK08599 coproporphyrinogen III oxidase; Provisional
Probab=24.71 E-value=1.1e+02 Score=34.05 Aligned_cols=64 Identities=23% Similarity=0.336 Sum_probs=43.9
Q ss_pred HhhhHHHHHcCCCeEEECcccccCccCcccCCCCCCCcccCCCCCCCCCCCcHHHHHHHHHHHHHcCCE-EEEEeeeccc
Q 003901 267 VEKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYNYSSAGIRNCGHDAINEFKLLVREAHKRGIE-VVMDVVFNHT 345 (788)
Q Consensus 267 ~~~L~yLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~wgY~~~~~~~~~~G~~~elk~lV~~aH~~Gi~-VilDvV~NH~ 345 (788)
.+.|..|+++|++.|.|-. ..+.... ... . .+..+.++..+.|+.+++.|+. |-+|+.++.-
T Consensus 100 ~e~l~~l~~~G~~rvsiGv-qS~~~~~------------l~~---l-~r~~~~~~~~~~i~~l~~~g~~~v~~dli~GlP 162 (377)
T PRK08599 100 KEKLQVLKDSGVNRISLGV-QTFNDEL------------LKK---I-GRTHNEEDVYEAIANAKKAGFDNISIDLIYALP 162 (377)
T ss_pred HHHHHHHHHcCCCEEEEec-ccCCHHH------------HHH---c-CCCCCHHHHHHHHHHHHHcCCCcEEEeeecCCC
Confidence 3678999999999988643 2221100 000 1 1345688999999999999998 6789998876
Q ss_pred cC
Q 003901 346 VE 347 (788)
Q Consensus 346 ~~ 347 (788)
++
T Consensus 163 gq 164 (377)
T PRK08599 163 GQ 164 (377)
T ss_pred CC
Confidence 54
No 236
>PLN02814 beta-glucosidase
Probab=24.49 E-value=1.7e+02 Score=34.14 Aligned_cols=69 Identities=16% Similarity=0.238 Sum_probs=46.4
Q ss_pred CCcCHHHHHhhhHHHHHcCCCeEEECcccccCccCcccCCCCCCCcccCCCCCCCCCCCcHHHHHHHHHHHHHcCCEEEE
Q 003901 259 HPGTYLGVVEKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYNYSSAGIRNCGHDAINEFKLLVREAHKRGIEVVM 338 (788)
Q Consensus 259 ~~G~~~gl~~~L~yLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~wgY~~~~~~~~~~G~~~elk~lV~~aH~~Gi~Vil 338 (788)
....|.-..|.+.-+|+||+++--++=-+.- .-+.+.-...-..++=.++||++|.++||+.|+
T Consensus 72 a~D~Yhry~EDI~L~k~lG~~ayRfSIsWsR----------------I~P~G~g~~N~~Gl~fY~~lId~l~~~GI~P~V 135 (504)
T PLN02814 72 ASDGYHKYKEDVKLMAEMGLESFRFSISWSR----------------LIPNGRGLINPKGLLFYKNLIKELRSHGIEPHV 135 (504)
T ss_pred cccHHHhhHHHHHHHHHcCCCEEEEeccHhh----------------cCcCCCCCCCHHHHHHHHHHHHHHHHcCCceEE
Confidence 4567888999999999999999876432221 111100001123466689999999999999997
Q ss_pred Eeeeccc
Q 003901 339 DVVFNHT 345 (788)
Q Consensus 339 DvV~NH~ 345 (788)
=+ .|.
T Consensus 136 TL--~H~ 140 (504)
T PLN02814 136 TL--YHY 140 (504)
T ss_pred Ee--cCC
Confidence 55 464
No 237
>COG4943 Predicted signal transduction protein containing sensor and EAL domains [Signal transduction mechanisms]
Probab=24.40 E-value=91 Score=35.52 Aligned_cols=65 Identities=17% Similarity=0.188 Sum_probs=41.0
Q ss_pred EEEeccCcccCCCCCCCCCcCHHHHHhhhHHHHHcCCCeEEECcccccCccCcccCCCCCCCcccCCCCCCCCCCCcHHH
Q 003901 242 YEVHVRGFTRHESSKTEHPGTYLGVVEKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYNYSSAGIRNCGHDAINE 321 (788)
Q Consensus 242 Yei~v~~Ft~~~~s~~~~~G~~~gl~~~L~yLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~wgY~~~~~~~~~~G~~~e 321 (788)
|+|.+|+|..+- ..|-||++|-|++|-+==.|--. -+++. .+.-=
T Consensus 415 ~~IyIDDFGTGY--------------SnL~YLq~L~VDaLKIDKsFvdt-------------lg~~~--------a~~~I 459 (524)
T COG4943 415 HEIYIDDFGTGY--------------SNLHYLQSLPVDALKIDKSFVDT-------------LGTDS--------ASHLI 459 (524)
T ss_pred CeEEEccCcCcc--------------hhHHHHhhCCccceeccHHHHHh-------------hccCc--------ccchh
Confidence 667777774421 24788888888888643222210 02222 12234
Q ss_pred HHHHHHHHHHcCCEEEEEee
Q 003901 322 FKLLVREAHKRGIEVVMDVV 341 (788)
Q Consensus 322 lk~lV~~aH~~Gi~VilDvV 341 (788)
+-.+|+-||..||++|...|
T Consensus 460 ~~hII~MAk~L~L~iVaEGV 479 (524)
T COG4943 460 APHIIEMAKSLGLKIVAEGV 479 (524)
T ss_pred HHHHHHHHHHcCCcEEeecc
Confidence 67889999999999998877
No 238
>cd06543 GH18_PF-ChiA-like PF-ChiA is an uncharacterized chitinase found in the hyperthermophilic archaeon Pyrococcus furiosus with a glycosyl hydrolase family 18 (GH18) catalytic domain as well as a cellulose-binding domain. Members of this domain family are found not only in archaea but also in eukaryotes and prokaryotes. PF-ChiA exhibits hydrolytic activity toward both colloidal and crystalline (beta/alpha) chitins at high temperature.
Probab=24.38 E-value=2e+02 Score=30.88 Aligned_cols=96 Identities=10% Similarity=0.075 Sum_probs=56.5
Q ss_pred HHHHHcCCCeEEECcccccCccCcccCCCCCCCcccCCCCCCCCCCCcHHHHHHHHHHHHHcCCEEEEEeeeccccCCCC
Q 003901 271 DHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYNYSSAGIRNCGHDAINEFKLLVREAHKRGIEVVMDVVFNHTVEGND 350 (788)
Q Consensus 271 ~yLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~wgY~~~~~~~~~~G~~~elk~lV~~aH~~Gi~VilDvV~NH~~~~~~ 350 (788)
.+.++-|+++|-|.=+..... -.-.|+-. ........++.-|++|+++|++||+=+ +.
T Consensus 19 ~~~~~~g~~~v~lAFi~~~~~--------~~~~w~g~------~~~~~~~~~~~~i~~lk~~G~kViiS~-------GG- 76 (294)
T cd06543 19 TYAAATGVKAFTLAFIVASGG--------CKPAWGGS------YPLDQGGWIKSDIAALRAAGGDVIVSF-------GG- 76 (294)
T ss_pred HHHHHcCCCEEEEEEEEcCCC--------CcccCCCC------CCcccchhHHHHHHHHHHcCCeEEEEe-------cC-
Confidence 567788999998763322110 00113211 011235668888999999999998821 11
Q ss_pred CCCccccCCCCCccceeeCCCCCcccCCCCccccCCCCHHHHHHHHHHHHHHHHhcCccEEEEeccc
Q 003901 351 KGPILSFRGVDNSVYYMLAPKGEFYNYSGCGNTFNCNHPVVRQFIVDCLRYWVTEMHVDGFRFDLAS 417 (788)
Q Consensus 351 ~~~~~~~~~~~~~~yy~~~~~g~~~~~~g~~~dln~~~p~vr~~i~d~l~~W~~e~gVDGFR~D~a~ 417 (788)
..... + . . ...-++.+++++...++.||+||+=||--.
T Consensus 77 ---------~~g~~-~--------~----------~-~~~~~~~~~~a~~~~i~~y~~dgiDfDiE~ 114 (294)
T cd06543 77 ---------ASGTP-L--------A----------T-SCTSADQLAAAYQKVIDAYGLTHLDFDIEG 114 (294)
T ss_pred ---------CCCCc-c--------c----------c-CcccHHHHHHHHHHHHHHhCCCeEEEeccC
Confidence 11000 0 0 0 123456677777778889999999998654
No 239
>PRK07094 biotin synthase; Provisional
Probab=24.36 E-value=1.2e+02 Score=32.81 Aligned_cols=63 Identities=16% Similarity=0.131 Sum_probs=43.6
Q ss_pred HhhhHHHHHcCCCeEEECcccccCccCcccCCCCCCCcccCCCCCCCCCCCcHHHHHHHHHHHHHcCCEEEEEeeecccc
Q 003901 267 VEKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYNYSSAGIRNCGHDAINEFKLLVREAHKRGIEVVMDVVFNHTV 346 (788)
Q Consensus 267 ~~~L~yLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~wgY~~~~~~~~~~G~~~elk~lV~~aH~~Gi~VilDvV~NH~~ 346 (788)
.+.+..||+.|++.|.+.. |..+... |.. +.+ -.+.++..+.++.+|+.||.|-.++++.+-+
T Consensus 129 ~e~l~~Lk~aG~~~v~~gl--Es~~~~~-----------~~~---i~~-~~s~~~~~~~i~~l~~~Gi~v~~~~iiGlpg 191 (323)
T PRK07094 129 YEEYKAWKEAGADRYLLRH--ETADKEL-----------YAK---LHP-GMSFENRIACLKDLKELGYEVGSGFMVGLPG 191 (323)
T ss_pred HHHHHHHHHcCCCEEEecc--ccCCHHH-----------HHH---hCC-CCCHHHHHHHHHHHHHcCCeecceEEEECCC
Confidence 4567899999999988432 2111000 000 122 3578999999999999999999999988754
No 240
>PRK09028 cystathionine beta-lyase; Provisional
Probab=24.14 E-value=85 Score=35.30 Aligned_cols=29 Identities=24% Similarity=0.322 Sum_probs=26.4
Q ss_pred CCCcHHHHHHHHHHHHHcCCEEEEEeeec
Q 003901 315 GHDAINEFKLLVREAHKRGIEVVMDVVFN 343 (788)
Q Consensus 315 ~~G~~~elk~lV~~aH~~Gi~VilDvV~N 343 (788)
+.|...+++++++.||++|+-||+|-++-
T Consensus 158 Ptg~v~dl~~I~~la~~~g~~lvvD~t~a 186 (394)
T PRK09028 158 ITMEVQDVPTLSRIAHEHDIVVMLDNTWA 186 (394)
T ss_pred CCCcHHHHHHHHHHHHHcCCEEEEECCcc
Confidence 46889999999999999999999998874
No 241
>PLN02905 beta-amylase
Probab=24.01 E-value=3.2e+02 Score=32.41 Aligned_cols=86 Identities=14% Similarity=0.217 Sum_probs=53.0
Q ss_pred eEEEEEeccCcccCCCCCCCCCcCHHHHHhhhHHHHHcCCCeEEECcccccCccCcccCCCCCCCcccCCCCCCCCCCCc
Q 003901 239 LIIYEVHVRGFTRHESSKTEHPGTYLGVVEKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYNYSSAGIRNCGHDA 318 (788)
Q Consensus 239 ~viYei~v~~Ft~~~~s~~~~~G~~~gl~~~L~yLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~wgY~~~~~~~~~~G~ 318 (788)
..+|-+.+-+....+ ...-+.++|...|..||.+||+.|-+ +|+ ||+-...- |.-=.
T Consensus 265 VpVyVMLPLd~V~~~----~~l~~~~al~a~L~aLK~aGVdGVmv-DVW----------------WGiVE~~g--P~~Yd 321 (702)
T PLN02905 265 VPVYVMLPLGVINMK----CELADPDGLLKQLRILKSINVDGVKV-DCW----------------WGIVEAHA--PQEYN 321 (702)
T ss_pred eeEEEEeecceecCC----CcccCHHHHHHHHHHHHHcCCCEEEE-eee----------------eeeeecCC--CCcCC
Confidence 556666655543211 11345788999999999999999964 443 22211100 00002
Q ss_pred HHHHHHHHHHHHHcCCEEEEEeeeccccC
Q 003901 319 INEFKLLVREAHKRGIEVVMDVVFNHTVE 347 (788)
Q Consensus 319 ~~elk~lV~~aH~~Gi~VilDvV~NH~~~ 347 (788)
..-.++|++-+.+.|++|..=+-|.-++.
T Consensus 322 WsgY~~L~~mvr~~GLKlqvVMSFHqCGG 350 (702)
T PLN02905 322 WNGYKRLFQMVRELKLKLQVVMSFHECGG 350 (702)
T ss_pred cHHHHHHHHHHHHcCCeEEEEEEecccCC
Confidence 45578888888899999988777755543
No 242
>PRK07379 coproporphyrinogen III oxidase; Provisional
Probab=24.00 E-value=1.6e+02 Score=33.14 Aligned_cols=63 Identities=21% Similarity=0.327 Sum_probs=44.6
Q ss_pred hhhHHHHHcCCCeEEECcccccCccCcccCCCCCCCcccCCCCCCCCCCCcHHHHHHHHHHHHHcCCE-EEEEeeecccc
Q 003901 268 EKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYNYSSAGIRNCGHDAINEFKLLVREAHKRGIE-VVMDVVFNHTV 346 (788)
Q Consensus 268 ~~L~yLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~wgY~~~~~~~~~~G~~~elk~lV~~aH~~Gi~-VilDvV~NH~~ 346 (788)
++|..||++|||.|.|-. ..+...-- . .+ -+.-+.++..+.++.+++.|+. |-+|+.++.-+
T Consensus 116 e~l~~l~~~GvnrislGv-QS~~d~~L------------~---~l-~R~~~~~~~~~ai~~l~~~G~~~v~~dlI~GlPg 178 (400)
T PRK07379 116 EQLQGYRSLGVNRVSLGV-QAFQDELL------------A---LC-GRSHRVKDIFAAVDLIHQAGIENFSLDLISGLPH 178 (400)
T ss_pred HHHHHHHHCCCCEEEEEc-ccCCHHHH------------H---Hh-CCCCCHHHHHHHHHHHHHcCCCeEEEEeecCCCC
Confidence 678999999999998643 32211000 0 01 1334788999999999999999 88999998766
Q ss_pred C
Q 003901 347 E 347 (788)
Q Consensus 347 ~ 347 (788)
.
T Consensus 179 q 179 (400)
T PRK07379 179 Q 179 (400)
T ss_pred C
Confidence 4
No 243
>cd05815 CBM20_DPE2_repeat1 Disproportionating enzyme 2 (DPE2), N-terminal CBM20 (carbohydrate-binding module, family 20) domain, repeat 1. DPE2 is a transglucosidase that is essential for the cytosolic metabolism of maltose in plant leaves at night. Maltose is an intermediate on the pathway from starch to sucrose and DPE2 is thought to metabolize the maltose that is exported from the chloroplast. DPE2 has two N-terminal CBM20 starch binding domains as well as a C-terminal amylomaltase (4-alpha-glucanotransferase) catalytic domain. DPE1, the plastid version of this enzyme, has a transglucosidase domain that is similar to that of DPE2 but lacks the N-terminal carbohydrate-binding domains. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabol
Probab=23.78 E-value=2e+02 Score=25.28 Aligned_cols=62 Identities=16% Similarity=0.088 Sum_probs=36.0
Q ss_pred EEEEEEcCCC--CEEEEEEEeCCCccCCceeeEEecccccCCCCCEEEEEEcCC-CCCceeeEEEc
Q 003901 107 VNFSIFSSNA--VSATLCLITLSDLQENKVTEEIALDSFANKTGDVWHVFLKGD-FKDMLYGYKFD 169 (788)
Q Consensus 107 ~~F~vwap~A--~~V~L~l~~~~d~~~~~~~~~~~l~~~~~~~~gvW~~~i~~~-~~~~~Y~y~~~ 169 (788)
++|++-..+. +++.|+- ....+++|.....++|......++..|++.+.-. .....|+|-+.
T Consensus 2 l~f~i~~~t~~Ge~l~v~G-~~~~LG~W~~~~a~~m~~~~~~~~~~W~~~v~~~~~~~veYky~v~ 66 (101)
T cd05815 2 LSFKLPYYTQWGQSLLICG-SDPLLGSWNVKKGLLLKPSHQGDVLVWSGSISVPPGFSSEYNYYVV 66 (101)
T ss_pred EEEEEEEEccCCCEEEEEc-ChHHcCCcChHhcEeeeecCCCCCCEEEEEEEeCCCCcEEEEEEEE
Confidence 5777766544 4554441 2234566777677788542223445898886432 34577888773
No 244
>PRK05939 hypothetical protein; Provisional
Probab=23.77 E-value=86 Score=35.29 Aligned_cols=29 Identities=14% Similarity=0.179 Sum_probs=26.0
Q ss_pred CCCCcHHHHHHHHHHHHHcCCEEEEEeee
Q 003901 314 CGHDAINEFKLLVREAHKRGIEVVMDVVF 342 (788)
Q Consensus 314 ~~~G~~~elk~lV~~aH~~Gi~VilDvV~ 342 (788)
...|...+++++++.||++|+.||+|-.+
T Consensus 142 NptG~v~dl~~I~~la~~~gi~livD~t~ 170 (397)
T PRK05939 142 NPGTQVADLAGIGALCRERGLLYVVDNTM 170 (397)
T ss_pred CCCCCHHhHHHHHHHHHHcCCEEEEECCc
Confidence 35788999999999999999999999764
No 245
>PRK05967 cystathionine beta-lyase; Provisional
Probab=23.62 E-value=89 Score=35.17 Aligned_cols=30 Identities=20% Similarity=0.375 Sum_probs=27.2
Q ss_pred CCCcHHHHHHHHHHHHHcCCEEEEEeeecc
Q 003901 315 GHDAINEFKLLVREAHKRGIEVVMDVVFNH 344 (788)
Q Consensus 315 ~~G~~~elk~lV~~aH~~Gi~VilDvV~NH 344 (788)
+.++..+++++++.||++|+-||+|-++..
T Consensus 161 P~l~v~dl~~I~~la~~~g~~vvVD~t~a~ 190 (395)
T PRK05967 161 NTFEMQDIPAIAEAAHRHGAIVMMDNTWAT 190 (395)
T ss_pred CCCcHHHHHHHHHHHHHhCCEEEEECCccC
Confidence 468999999999999999999999999853
No 246
>cd02876 GH18_SI-CLP Stabilin-1 interacting chitinase-like protein (SI-CLP) is a eukaryotic chitinase-like protein of unknown function that interacts with the endocytic/sorting transmembrane receptor stabilin-1 and is secreted from the lysosome. SI-CLP has a glycosyl hydrolase family 18 (GH18) domain but lacks a chitin-binding domain. The catalytic amino acids of the GH18 domain are not conserved in SI-CLP, similar to the chitolectins YKL-39, YKL-40, and YM1/2. Human SI-CLP is sorted to late endosomes and secretory lysosomes in alternatively activated macrophages.
Probab=23.31 E-value=87 Score=33.96 Aligned_cols=29 Identities=21% Similarity=0.312 Sum_probs=25.7
Q ss_pred CCHHHHHHHHHHHHHHHHhcCccEEEEec
Q 003901 387 NHPVVRQFIVDCLRYWVTEMHVDGFRFDL 415 (788)
Q Consensus 387 ~~p~vr~~i~d~l~~W~~e~gVDGFR~D~ 415 (788)
.++..|+.+++++..+++++|+||+-+|.
T Consensus 88 ~~~~~R~~fi~s~~~~~~~~~~DGidiD~ 116 (318)
T cd02876 88 NDEQEREKLIKLLVTTAKKNHFDGIVLEV 116 (318)
T ss_pred cCHHHHHHHHHHHHHHHHHcCCCcEEEec
Confidence 45788999999999999999999999983
No 247
>PLN00197 beta-amylase; Provisional
Probab=23.21 E-value=3.3e+02 Score=31.75 Aligned_cols=87 Identities=13% Similarity=0.160 Sum_probs=52.1
Q ss_pred CeEEEEEeccCcccCCCCCCCCCcCHHHHHhhhHHHHHcCCCeEEECcccccCccCcccCCCCCCCcccCCCCCCCCCCC
Q 003901 238 DLIIYEVHVRGFTRHESSKTEHPGTYLGVVEKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYNYSSAGIRNCGHD 317 (788)
Q Consensus 238 ~~viYei~v~~Ft~~~~s~~~~~G~~~gl~~~L~yLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~wgY~~~~~~~~~~G 317 (788)
...+|-+.+-+....+ ...-+-+++...|..||.+||+.|-+ +|+ ||+-...- |+-=
T Consensus 105 ~vpvyVMLPLd~V~~~----~~l~~~~~l~~~L~~LK~~GVdGVmv-DvW----------------WGiVE~~~--p~~Y 161 (573)
T PLN00197 105 GVPVYVMMPLDSVTMG----NTVNRRKAMKASLQALKSAGVEGIMM-DVW----------------WGLVERES--PGVY 161 (573)
T ss_pred CeeEEEEeecceeccC----CcccCHHHHHHHHHHHHHcCCCEEEE-eee----------------eeeeccCC--CCcC
Confidence 4556666665543211 01223467888999999999999964 443 22211100 0000
Q ss_pred cHHHHHHHHHHHHHcCCEEEEEeeeccccC
Q 003901 318 AINEFKLLVREAHKRGIEVVMDVVFNHTVE 347 (788)
Q Consensus 318 ~~~elk~lV~~aH~~Gi~VilDvV~NH~~~ 347 (788)
...-.++|++-+.+.|+||..=+-|.-++.
T Consensus 162 dWsgY~~L~~mvr~~GLKlq~VmSFHqCGG 191 (573)
T PLN00197 162 NWGGYNELLEMAKRHGLKVQAVMSFHQCGG 191 (573)
T ss_pred CcHHHHHHHHHHHHcCCeEEEEEEecccCC
Confidence 245577888888899999988777755543
No 248
>COG0134 TrpC Indole-3-glycerol phosphate synthase [Amino acid transport and metabolism]
Probab=23.10 E-value=88 Score=32.77 Aligned_cols=22 Identities=36% Similarity=0.602 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHcCCEEEEEe
Q 003901 319 INEFKLLVREAHKRGIEVVMDV 340 (788)
Q Consensus 319 ~~elk~lV~~aH~~Gi~VilDv 340 (788)
.+++++|++.||+.||.|+..|
T Consensus 142 ~~~l~el~~~A~~LGm~~LVEV 163 (254)
T COG0134 142 DEQLEELVDRAHELGMEVLVEV 163 (254)
T ss_pred HHHHHHHHHHHHHcCCeeEEEE
Confidence 5789999999999999999987
No 249
>COG0520 csdA Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones]
Probab=22.87 E-value=71 Score=36.07 Aligned_cols=29 Identities=24% Similarity=0.329 Sum_probs=26.7
Q ss_pred CCCCCcHHHHHHHHHHHHHcCCEEEEEee
Q 003901 313 NCGHDAINEFKLLVREAHKRGIEVVMDVV 341 (788)
Q Consensus 313 ~~~~G~~~elk~lV~~aH~~Gi~VilDvV 341 (788)
....|+..+++++++.||++|.-|++|.+
T Consensus 172 Sn~tG~~~pv~~I~~la~~~ga~v~VDaa 200 (405)
T COG0520 172 SNVTGTVNPVKEIAELAHEHGALVLVDAA 200 (405)
T ss_pred cccccccchHHHHHHHHHHcCCEEEEECc
Confidence 34689999999999999999999999987
No 250
>PRK05799 coproporphyrinogen III oxidase; Provisional
Probab=22.77 E-value=1.4e+02 Score=33.29 Aligned_cols=63 Identities=24% Similarity=0.303 Sum_probs=43.5
Q ss_pred hhhHHHHHcCCCeEEECcccccCccCcccCCCCCCCcccCCCCCCCCCCCcHHHHHHHHHHHHHcCCE-EEEEeeecccc
Q 003901 268 EKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYNYSSAGIRNCGHDAINEFKLLVREAHKRGIE-VVMDVVFNHTV 346 (788)
Q Consensus 268 ~~L~yLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~wgY~~~~~~~~~~G~~~elk~lV~~aH~~Gi~-VilDvV~NH~~ 346 (788)
+.|..|+++|++.|.|-. ..+.... ... . .+..+.++..+.|+.+++.|+. |-+|+.++..+
T Consensus 100 e~l~~l~~~G~~rvsiGv-qS~~d~~------------L~~---l-~R~~~~~~~~~ai~~l~~~g~~~v~~dli~GlPg 162 (374)
T PRK05799 100 EKLKILKSMGVNRLSIGL-QAWQNSL------------LKY---L-GRIHTFEEFLENYKLARKLGFNNINVDLMFGLPN 162 (374)
T ss_pred HHHHHHHHcCCCEEEEEC-ccCCHHH------------HHH---c-CCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCC
Confidence 578999999999988643 3221100 000 1 1234688999999999999997 77999988655
Q ss_pred C
Q 003901 347 E 347 (788)
Q Consensus 347 ~ 347 (788)
+
T Consensus 163 q 163 (374)
T PRK05799 163 Q 163 (374)
T ss_pred C
Confidence 4
No 251
>PRK09057 coproporphyrinogen III oxidase; Provisional
Probab=22.75 E-value=1.6e+02 Score=32.95 Aligned_cols=63 Identities=13% Similarity=0.196 Sum_probs=44.1
Q ss_pred hhhHHHHHcCCCeEEECcccccCccCcccCCCCCCCcccCCCCCCCCCCCcHHHHHHHHHHHHHcCCEEEEEeeeccccC
Q 003901 268 EKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYNYSSAGIRNCGHDAINEFKLLVREAHKRGIEVVMDVVFNHTVE 347 (788)
Q Consensus 268 ~~L~yLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~wgY~~~~~~~~~~G~~~elk~lV~~aH~~Gi~VilDvV~NH~~~ 347 (788)
++|..|+++|||.|.|- |..+....- ..+. +.-+.++..+.|+.+++.++.|-+|+.++--+.
T Consensus 105 e~L~~l~~~GvnrislG-vQS~~d~vL---------------~~l~-R~~~~~~~~~ai~~~~~~~~~v~~dli~GlPgq 167 (380)
T PRK09057 105 GRFRGYRAAGVNRVSLG-VQALNDADL---------------RFLG-RLHSVAEALAAIDLAREIFPRVSFDLIYARPGQ 167 (380)
T ss_pred HHHHHHHHcCCCEEEEe-cccCCHHHH---------------HHcC-CCCCHHHHHHHHHHHHHhCccEEEEeecCCCCC
Confidence 78999999999999863 232211000 0011 233688899999999999999999999887543
No 252
>PRK14467 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=22.74 E-value=3.8e+02 Score=29.64 Aligned_cols=69 Identities=13% Similarity=0.164 Sum_probs=45.6
Q ss_pred EEEEEeccCcccCCCCCCCCCcCHHHHHhhhHHHHHcC-CCeEEECcccccCccCcccCCCCCCCcccCCCCCCCCCCCc
Q 003901 240 IIYEVHVRGFTRHESSKTEHPGTYLGVVEKLDHLKDLG-INCLELMPCHEFNELEYFSYNSVLGDYNYSSAGIRNCGHDA 318 (788)
Q Consensus 240 viYei~v~~Ft~~~~s~~~~~G~~~gl~~~L~yLk~LG-vt~I~L~Pi~~~~~~~~~~~~~~~~~wgY~~~~~~~~~~G~ 318 (788)
.|=-+.+.+++++ ...+.+-.++|+.++ +..|.|+|.++.+.. +|. . -+
T Consensus 254 ~ieyvLIpGvNDs----------~e~a~~La~~l~~l~~~~~VnLIPynp~~~~------------~~~-----~---ps 303 (348)
T PRK14467 254 MLEYVLIKGVNDS----------PEDALRLAQLIGKNKKKFKVNLIPFNPDPEL------------PYE-----R---PE 303 (348)
T ss_pred EEEEEEECCccCC----------HHHHHHHHHHHhcCCCceEEEEecCCCCCCC------------CCC-----C---CC
Confidence 3334577777663 344555557888874 778999998764321 111 1 14
Q ss_pred HHHHHHHHHHHHHcCCEEEE
Q 003901 319 INEFKLLVREAHKRGIEVVM 338 (788)
Q Consensus 319 ~~elk~lV~~aH~~Gi~Vil 338 (788)
.++++++.+.+.++|+.|.+
T Consensus 304 ~e~i~~f~~~L~~~gi~v~v 323 (348)
T PRK14467 304 LERVYKFQKILWDNGISTFV 323 (348)
T ss_pred HHHHHHHHHHHHHCCCcEEE
Confidence 67888888889999999854
No 253
>cd02879 GH18_plant_chitinase_class_V The class V plant chitinases have a glycosyl hydrolase family 18 (GH18) domain, but lack the chitin-binding domain present in other GH18 enzymes. The GH18 domain of the class V chitinases has endochitinase activity in some cases and no catalytic activity in others. Included in this family is a lectin found in black locust (Robinia pseudoacacia) bark, which binds chitin but lacks chitinase activity. Also included is a chitinase-related receptor-like kinase (CHRK1) from tobacco (Nicotiana tabacum), with an N-terminal GH18 domain and a C-terminal kinase domain, which is thought to be part of a plant signaling pathway. The GH18 domain of CHRK1 is expressed extracellularly where it binds chitin but lacks chitinase activity.
Probab=22.69 E-value=86 Score=33.76 Aligned_cols=29 Identities=17% Similarity=0.331 Sum_probs=25.9
Q ss_pred CCHHHHHHHHHHHHHHHHhcCccEEEEec
Q 003901 387 NHPVVRQFIVDCLRYWVTEMHVDGFRFDL 415 (788)
Q Consensus 387 ~~p~vr~~i~d~l~~W~~e~gVDGFR~D~ 415 (788)
.++..|+.+++++..+++++|+||+-+|-
T Consensus 88 ~~~~~R~~fi~siv~~l~~~~fDGidiDW 116 (299)
T cd02879 88 SDPTARKAFINSSIKVARKYGFDGLDLDW 116 (299)
T ss_pred CCHHHHHHHHHHHHHHHHHhCCCceeecc
Confidence 46788999999999999999999999983
No 254
>PRK06582 coproporphyrinogen III oxidase; Provisional
Probab=22.63 E-value=1.9e+02 Score=32.44 Aligned_cols=64 Identities=16% Similarity=0.143 Sum_probs=45.3
Q ss_pred hhhHHHHHcCCCeEEECcccccCccCcccCCCCCCCcccCCCCCCCCCCCcHHHHHHHHHHHHHcCCEEEEEeeeccccC
Q 003901 268 EKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYNYSSAGIRNCGHDAINEFKLLVREAHKRGIEVVMDVVFNHTVE 347 (788)
Q Consensus 268 ~~L~yLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~wgY~~~~~~~~~~G~~~elk~lV~~aH~~Gi~VilDvV~NH~~~ 347 (788)
++|..||++|||.|.|-. ..+.... . . .+ -+.-+.++..+.++.+++.++.|-+|++++.-+.
T Consensus 112 e~l~~l~~~GvnRiSiGv-QS~~d~~-L-----------~---~l-gR~h~~~~~~~ai~~~~~~~~~v~~DlI~GlPgq 174 (390)
T PRK06582 112 EKFKAFKLAGINRVSIGV-QSLKEDD-L-----------K---KL-GRTHDCMQAIKTIEAANTIFPRVSFDLIYARSGQ 174 (390)
T ss_pred HHHHHHHHCCCCEEEEEC-CcCCHHH-H-----------H---Hc-CCCCCHHHHHHHHHHHHHhCCcEEEEeecCCCCC
Confidence 789999999999998643 2221100 0 0 00 1334688888899999999999999999988765
Q ss_pred C
Q 003901 348 G 348 (788)
Q Consensus 348 ~ 348 (788)
.
T Consensus 175 t 175 (390)
T PRK06582 175 T 175 (390)
T ss_pred C
Confidence 3
No 255
>PRK06294 coproporphyrinogen III oxidase; Provisional
Probab=22.48 E-value=1.4e+02 Score=33.16 Aligned_cols=63 Identities=14% Similarity=0.236 Sum_probs=43.7
Q ss_pred hhhHHHHHcCCCeEEECcccccCccCcccCCCCCCCcccCCCCCCCCCCCcHHHHHHHHHHHHHcCCE-EEEEeeecccc
Q 003901 268 EKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYNYSSAGIRNCGHDAINEFKLLVREAHKRGIE-VVMDVVFNHTV 346 (788)
Q Consensus 268 ~~L~yLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~wgY~~~~~~~~~~G~~~elk~lV~~aH~~Gi~-VilDvV~NH~~ 346 (788)
++|..|+++|||.|.|- |..+..... .. +. +.-+.++..+.|+.+++.|+. |-+|+.++.-+
T Consensus 104 ~~l~~l~~~G~nrislG-vQS~~~~~L------------~~---l~-R~~~~~~~~~ai~~~~~~g~~~v~~Dli~GlPg 166 (370)
T PRK06294 104 SYIRALALTGINRISIG-VQTFDDPLL------------KL---LG-RTHSSSKAIDAVQECSEHGFSNLSIDLIYGLPT 166 (370)
T ss_pred HHHHHHHHCCCCEEEEc-cccCCHHHH------------HH---cC-CCCCHHHHHHHHHHHHHcCCCeEEEEeecCCCC
Confidence 57899999999999763 333221000 00 11 223678899999999999996 89999998765
Q ss_pred C
Q 003901 347 E 347 (788)
Q Consensus 347 ~ 347 (788)
.
T Consensus 167 q 167 (370)
T PRK06294 167 Q 167 (370)
T ss_pred C
Confidence 4
No 256
>cd06450 DOPA_deC_like DOPA decarboxylase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to DOPA/tyrosine decarboxylase (DDC), histidine decarboxylase (HDC), and glutamate decarboxylase (GDC). DDC is active as a dimer and catalyzes the decarboxylation of tyrosine. GDC catalyzes the decarboxylation of glutamate and HDC catalyzes the decarboxylation of histidine.
Probab=22.44 E-value=1.3e+02 Score=32.59 Aligned_cols=30 Identities=17% Similarity=0.214 Sum_probs=25.7
Q ss_pred CCcHHHHHHHHHHHHHcCCEEEEEeeeccc
Q 003901 316 HDAINEFKLLVREAHKRGIEVVMDVVFNHT 345 (788)
Q Consensus 316 ~G~~~elk~lV~~aH~~Gi~VilDvV~NH~ 345 (788)
.|..++++++++-||++|+-|++|-++...
T Consensus 161 tG~~~~~~~i~~~~~~~~~~l~vD~a~~~~ 190 (345)
T cd06450 161 TGAIDPLEEIADLAEKYDLWLHVDAAYGGF 190 (345)
T ss_pred CCCCCCHHHHHHHHHHhCCeEEEechhhHH
Confidence 567788999999999999999999986543
No 257
>COG0113 HemB Delta-aminolevulinic acid dehydratase [Coenzyme metabolism]
Probab=22.30 E-value=2.9e+02 Score=29.74 Aligned_cols=92 Identities=21% Similarity=0.201 Sum_probs=53.6
Q ss_pred CeEEEEEeccCcccC----CCCCCCCCcCHHHHHhhhHHHHHcCCCeEEECcccccCccCcccCCCCCCCcccCCCCCCC
Q 003901 238 DLIIYEVHVRGFTRH----ESSKTEHPGTYLGVVEKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYNYSSAGIRN 313 (788)
Q Consensus 238 ~~viYei~v~~Ft~~----~~s~~~~~G~~~gl~~~L~yLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~wgY~~~~~~~ 313 (788)
+..||=++|..=.+. ++-.+-++=....+.+.+..+.+|||.+|-|-||-+....+..+. -.|++.+
T Consensus 31 ~dLI~PiFV~eg~~~~~~I~SMPgv~r~s~d~l~~~~~~~~~lGi~av~LFgvp~~~~Kd~~gs------~A~~~~g--- 101 (330)
T COG0113 31 NDLIYPIFVVEGENIKEEIPSMPGVYRYSLDRLVEEAEELVDLGIPAVILFGVPDDSKKDETGS------EAYDPDG--- 101 (330)
T ss_pred HHeeEeEEEecCCCCccccCCCCCceeccHHHHHHHHHHHHhcCCCEEEEeCCCcccccCcccc------cccCCCC---
Confidence 446777777642210 011122344577788889999999999999999986432222221 1344332
Q ss_pred CCCCcHHHHHHHHHHHHHc--CCEEEEEeeeccc
Q 003901 314 CGHDAINEFKLLVREAHKR--GIEVVMDVVFNHT 345 (788)
Q Consensus 314 ~~~G~~~elk~lV~~aH~~--Gi~VilDvV~NH~ 345 (788)
- .++-|+++++. .|-||-|+.+.-.
T Consensus 102 ----i---vqravr~ik~~~p~l~iitDvcLcey 128 (330)
T COG0113 102 ----I---VQRAVRAIKEAFPELVVITDVCLCEY 128 (330)
T ss_pred ----h---HHHHHHHHHHhCCCeEEEeeecccCC
Confidence 2 33333333322 8999999987543
No 258
>PLN02591 tryptophan synthase
Probab=22.21 E-value=2.3e+02 Score=29.77 Aligned_cols=50 Identities=26% Similarity=0.353 Sum_probs=37.7
Q ss_pred HHHhhhHHHHHcCCCeEEECcccccCccCcccCCCCCCCcccCCCCCCCCCCCcHHHHHHHHHHHHHcCCEEEEEeeecc
Q 003901 265 GVVEKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYNYSSAGIRNCGHDAINEFKLLVREAHKRGIEVVMDVVFNH 344 (788)
Q Consensus 265 gl~~~L~yLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~wgY~~~~~~~~~~G~~~elk~lV~~aH~~Gi~VilDvV~NH 344 (788)
|+.+-+..+|+.|++.|-+..+ ..+|..+++++|+++||..|+=+.++.
T Consensus 94 G~~~F~~~~~~aGv~GviipDL-------------------------------P~ee~~~~~~~~~~~gl~~I~lv~Ptt 142 (250)
T PLN02591 94 GIDKFMATIKEAGVHGLVVPDL-------------------------------PLEETEALRAEAAKNGIELVLLTTPTT 142 (250)
T ss_pred HHHHHHHHHHHcCCCEEEeCCC-------------------------------CHHHHHHHHHHHHHcCCeEEEEeCCCC
Confidence 5555578888889888876432 258899999999999999999444554
Q ss_pred c
Q 003901 345 T 345 (788)
Q Consensus 345 ~ 345 (788)
.
T Consensus 143 ~ 143 (250)
T PLN02591 143 P 143 (250)
T ss_pred C
Confidence 3
No 259
>cd05817 CBM20_DSP Dual-specificity phosphatase (DSP), N-terminal CBM20 (carbohydrate-binding module, family 20) domain. This CBM20 domain is located at the N-terminus of a protein tyrosine phosphatase of unknown function found in slime molds and ciliated protozoans. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognition of appropriate regions of starch.
Probab=22.20 E-value=1.7e+02 Score=25.68 Aligned_cols=59 Identities=17% Similarity=0.207 Sum_probs=35.2
Q ss_pred EEEEEEcCCC--CEEEEEEEeCCCccCCceeeEEecccccCCCCCEEEEEEcCC-CCCceeeEEEc
Q 003901 107 VNFSIFSSNA--VSATLCLITLSDLQENKVTEEIALDSFANKTGDVWHVFLKGD-FKDMLYGYKFD 169 (788)
Q Consensus 107 ~~F~vwap~A--~~V~L~l~~~~d~~~~~~~~~~~l~~~~~~~~gvW~~~i~~~-~~~~~Y~y~~~ 169 (788)
++|+|-++.. +++.|+- ....+++|++...++|.. .++..|++.+.-. .....|+|-+.
T Consensus 2 v~F~i~~~t~~Ge~l~v~G-s~~~LG~W~~~~a~~m~~---~~~~~W~~~v~lp~~~~veYKY~i~ 63 (100)
T cd05817 2 VTFKIHYPTQFGEAVYISG-NCNQLGNWNPSKAKRMQW---NEGDLWTVDVGIPESVYIEYKYFVS 63 (100)
T ss_pred EEEEEEEEcCCCCEEEEEe-CcHHHCCCCccccCcccC---CCCCCEEEEEEECCCCcEEEEEEEE
Confidence 5677776644 4555541 222356677666677743 4567998876422 34567777763
No 260
>PLN02705 beta-amylase
Probab=22.17 E-value=3.3e+02 Score=32.13 Aligned_cols=86 Identities=13% Similarity=0.173 Sum_probs=53.3
Q ss_pred eEEEEEeccCcccCCCCCCCCCcCHHHHHhhhHHHHHcCCCeEEECcccccCccCcccCCCCCCCcccCCCCCCCCCCCc
Q 003901 239 LIIYEVHVRGFTRHESSKTEHPGTYLGVVEKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYNYSSAGIRNCGHDA 318 (788)
Q Consensus 239 ~viYei~v~~Ft~~~~s~~~~~G~~~gl~~~L~yLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~wgY~~~~~~~~~~G~ 318 (788)
..+|-+.+-+....+ ...-+-++|...|..||.+||+.|-+ +|+ ||+-...- |.-=.
T Consensus 247 VpVyVMLPLd~V~~~----~~l~~~~al~a~L~aLK~aGVdGVmv-DVW----------------WGiVE~~~--P~~Yd 303 (681)
T PLN02705 247 VPVYVMLAVGIINNF----CQLVDPEGVRQELSHMKSLNVDGVVV-DCW----------------WGIVEGWN--PQKYV 303 (681)
T ss_pred eeEEEEeecceeccC----CcccCHHHHHHHHHHHHHcCCCEEEE-eee----------------eeEeecCC--CCcCC
Confidence 667777766543311 11234577888999999999999963 443 22211100 00002
Q ss_pred HHHHHHHHHHHHHcCCEEEEEeeeccccC
Q 003901 319 INEFKLLVREAHKRGIEVVMDVVFNHTVE 347 (788)
Q Consensus 319 ~~elk~lV~~aH~~Gi~VilDvV~NH~~~ 347 (788)
..-.++|++-+.+.||+|..=+-|.-++.
T Consensus 304 WsgY~~L~~mvr~~GLKlqvVmSFHqCGG 332 (681)
T PLN02705 304 WSGYRELFNIIREFKLKLQVVMAFHEYGG 332 (681)
T ss_pred cHHHHHHHHHHHHcCCeEEEEEEeeccCC
Confidence 45577888888899999988777755543
No 261
>smart00636 Glyco_18 Glycosyl hydrolase family 18.
Probab=22.17 E-value=96 Score=33.74 Aligned_cols=30 Identities=20% Similarity=0.455 Sum_probs=26.1
Q ss_pred CCHHHHHHHHHHHHHHHHhcCccEEEEecc
Q 003901 387 NHPVVRQFIVDCLRYWVTEMHVDGFRFDLA 416 (788)
Q Consensus 387 ~~p~vr~~i~d~l~~W~~e~gVDGFR~D~a 416 (788)
.++..|+.+++.+..|+++++.||+-+|--
T Consensus 87 ~~~~~r~~fi~~i~~~~~~~~~DGidiDwE 116 (334)
T smart00636 87 SDPASRKKFIDSIVSFLKKYGFDGIDIDWE 116 (334)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCCeEEECCc
Confidence 457789999999999999999999999843
No 262
>COG1891 Uncharacterized protein conserved in archaea [Function unknown]
Probab=22.11 E-value=50 Score=32.25 Aligned_cols=26 Identities=27% Similarity=0.335 Sum_probs=21.8
Q ss_pred CCcHHHHHHHHHHHHHcCCEEEEEee
Q 003901 316 HDAINEFKLLVREAHKRGIEVVMDVV 341 (788)
Q Consensus 316 ~G~~~elk~lV~~aH~~Gi~VilDvV 341 (788)
|=.++++++||+.||++|+++-|-..
T Consensus 163 fm~~e~l~eFvd~Ah~hGL~~AlAGs 188 (235)
T COG1891 163 FMDEEELEEFVDLAHEHGLEVALAGS 188 (235)
T ss_pred hhcHHHHHHHHHHHHHcchHHHhccc
Confidence 34689999999999999999877544
No 263
>PF00686 CBM_20: Starch binding domain; InterPro: IPR002044 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain binds to starch, and is found often at the C terminus of a variety of glycosyl hydrolases acting on polysaccharides more rapidly than on oligosaccharides. Reations include: the hydrolysis of terminal 1,4-linked alpha-D-glucose residues successively from non-reducing ends of the chains with release of beta-D-glucose, the degradation of starch to cyclodextrins by formation of a 1,4-alpha-D-glucosidic bond, and hydrolysis of 1,4-alpha-glucosidic linkages in polysaccharides to remove successive maltose units from the non-reducing ends of the chains.; GO: 0003824 catalytic activity, 0005975 carbohydrate metabolic process; PDB: 1KUL_A 1ACZ_A 1AC0_A 1KUM_A 2Z0B_C 9CGT_A 3CGT_A 6CGT_A 4CGT_A 1CGT_A ....
Probab=22.02 E-value=1.5e+02 Score=25.80 Aligned_cols=64 Identities=11% Similarity=0.206 Sum_probs=35.6
Q ss_pred cEEEEEEcCCCCEEEEEEE-eCCCccCCceeeEEecccccC-CCCCEEEEEEcCC-CCCceeeEEEc
Q 003901 106 GVNFSIFSSNAVSATLCLI-TLSDLQENKVTEEIALDSFAN-KTGDVWHVFLKGD-FKDMLYGYKFD 169 (788)
Q Consensus 106 ~~~F~vwap~A~~V~L~l~-~~~d~~~~~~~~~~~l~~~~~-~~~gvW~~~i~~~-~~~~~Y~y~~~ 169 (788)
.|+|+|-......-.|.|. +...+.+|++...++|..... .....|++.|.-. .....|+|.+.
T Consensus 3 ~V~F~v~~~~~~ge~v~i~Gs~~~LG~W~~~~a~~l~~~~~~~~~~~W~~~v~lp~~~~~eYKy~i~ 69 (96)
T PF00686_consen 3 SVTFRVNYQTQPGESVYIVGSCPELGNWDPKKAVPLQWNEGTENYPIWSATVDLPAGTPFEYKYVIK 69 (96)
T ss_dssp EEEEEESE---TTEEEEEEESSGGGTTTSGGGSBESEBESSSSTTTSEEEEEEEETTSEEEEEEEEE
T ss_pred EEEEEEEeECCCCCEEEEEECcHHhCCCChHhccccccccCCCCCCeEEEEEECcCCCEEEEEEEEE
Confidence 4788885544433334333 223456788777788865311 1347999987432 33457777764
No 264
>cd03416 CbiX_SirB_N Sirohydrochlorin cobalt chelatase (CbiX) and sirohydrochlorin iron chelatase (SirB), N-terminal domain. SirB catalyzes the ferro-chelation of sirohydrochlorin to siroheme, the prosthetic group of sulfite and nitrite reductases. CbiX is a cobaltochelatase, responsible for the chelation of Co2+ into sirohydrochlorin, an important step in the vitamin B12 biosynthetic pathway. CbiX often contains a C-terminal histidine-rich region that may be important for metal delivery and/or storage, and may also contain an iron-sulfur center. Both are found in a wide range of bacteria. This subgroup also contains single domain proteins from archaea and bacteria which may represent the ancestral form of class II chelatases before domain duplication occurred.
Probab=21.99 E-value=1.8e+02 Score=25.33 Aligned_cols=26 Identities=23% Similarity=0.381 Sum_probs=21.8
Q ss_pred HHHhhhHHHHHcCCCeEEECcccccC
Q 003901 265 GVVEKLDHLKDLGINCLELMPCHEFN 290 (788)
Q Consensus 265 gl~~~L~yLk~LGvt~I~L~Pi~~~~ 290 (788)
.+.+.|+.+++.|++.|.+.|.|=++
T Consensus 45 ~~~~~l~~l~~~g~~~v~vvPlfl~~ 70 (101)
T cd03416 45 SLAEALDELAAQGATRIVVVPLFLLA 70 (101)
T ss_pred CHHHHHHHHHHcCCCEEEEEeeEeCC
Confidence 45666888888999999999999765
No 265
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=21.95 E-value=2.4e+02 Score=27.50 Aligned_cols=62 Identities=13% Similarity=0.139 Sum_probs=39.5
Q ss_pred HHHHHhhhHHHHHcCCCeEEECcccccCccCcccCCCCCCCcccCCCCCCCCCCCcHHHHHHHHHHHHHcCCEEEEEeee
Q 003901 263 YLGVVEKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYNYSSAGIRNCGHDAINEFKLLVREAHKRGIEVVMDVVF 342 (788)
Q Consensus 263 ~~gl~~~L~yLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~wgY~~~~~~~~~~G~~~elk~lV~~aH~~Gi~VilDvV~ 342 (788)
.....+.+.+.+++|+++|.+.|.+.+.. +. + .-+-.+.++++++++ +.++-||+...+
T Consensus 64 ~~~~~~~a~~a~~~Gad~i~v~~~~~~~~---------------~~----~-~~~~~~~~~~i~~~~-~~~~pv~iy~~p 122 (201)
T cd00945 64 TEVKVAEVEEAIDLGADEIDVVINIGSLK---------------EG----D-WEEVLEEIAAVVEAA-DGGLPLKVILET 122 (201)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeccHHHHh---------------CC----C-HHHHHHHHHHHHHHh-cCCceEEEEEEC
Confidence 78888889999999999999987653210 00 0 011233344444444 458999888776
Q ss_pred ccc
Q 003901 343 NHT 345 (788)
Q Consensus 343 NH~ 345 (788)
.++
T Consensus 123 ~~~ 125 (201)
T cd00945 123 RGL 125 (201)
T ss_pred CCC
Confidence 554
No 266
>PRK13511 6-phospho-beta-galactosidase; Provisional
Probab=21.86 E-value=2.3e+02 Score=32.64 Aligned_cols=69 Identities=19% Similarity=0.286 Sum_probs=47.0
Q ss_pred CCcCHHHHHhhhHHHHHcCCCeEEECcccccCccCcccCCCCCCCcccCCCCCCCCCCCcHHHHHHHHHHHHHcCCEEEE
Q 003901 259 HPGTYLGVVEKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYNYSSAGIRNCGHDAINEFKLLVREAHKRGIEVVM 338 (788)
Q Consensus 259 ~~G~~~gl~~~L~yLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~wgY~~~~~~~~~~G~~~elk~lV~~aH~~Gi~Vil 338 (788)
....|.-..|.+.-+|+||+++--++=-+.- .-+.+.-...-..++=.++||++|.++||+.|+
T Consensus 49 a~d~Y~ry~eDi~L~~~lG~~~yRfSIsWsR----------------I~P~G~g~vN~~gl~~Y~~lid~l~~~GI~P~V 112 (469)
T PRK13511 49 ASDFYHRYPEDLKLAEEFGVNGIRISIAWSR----------------IFPDGYGEVNPKGVEYYHRLFAECHKRHVEPFV 112 (469)
T ss_pred ccchhhhhHHHHHHHHHhCCCEEEeeccHhh----------------cCcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEE
Confidence 3466888899999999999999876433221 111100000123567799999999999999998
Q ss_pred Eeeeccc
Q 003901 339 DVVFNHT 345 (788)
Q Consensus 339 DvV~NH~ 345 (788)
-+. |.
T Consensus 113 TL~--H~ 117 (469)
T PRK13511 113 TLH--HF 117 (469)
T ss_pred Eec--CC
Confidence 764 64
No 267
>PRK14581 hmsF outer membrane N-deacetylase; Provisional
Probab=21.85 E-value=8.8e+02 Score=29.39 Aligned_cols=127 Identities=16% Similarity=0.107 Sum_probs=67.8
Q ss_pred HHhhhHHHHHcCCCeEEECcccccCccCcccCCCCCCCcccCCCCCCCCCCCcHHHH-HHHHHHHHH-cCCEEEEEeeec
Q 003901 266 VVEKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYNYSSAGIRNCGHDAINEF-KLLVREAHK-RGIEVVMDVVFN 343 (788)
Q Consensus 266 l~~~L~yLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~wgY~~~~~~~~~~G~~~el-k~lV~~aH~-~Gi~VilDvV~N 343 (788)
+-.-|+.+++||||+|+|-.+.+..+++.. + -=|-+ +.++--.+|| -...=.++. .|++|..-+-.-
T Consensus 336 l~~l~~ri~~~~~~~VyLqafadp~gdg~~--~-----~lYFp----nr~lPmraDlfnrvawql~tR~~v~vyAWmpvl 404 (672)
T PRK14581 336 LDKLVQRISDLRVTHVFLQAFSDPKGDGNI--R-----QVYFP----NRWIPMRQDLFNRVVWQLASRPDVEVYAWMPVL 404 (672)
T ss_pred HHHHHHHHHhcCCCEEEEEeeeCCCCCCce--e-----eEEec----CCcccHHHhhhhHHHHHHHhhhCceEEEeeehh
Confidence 333469999999999999988765433211 0 01222 2223334444 444355564 499998776533
Q ss_pred cccCCCCCCCccccCCCCCccceeeCCCCCcccC-CCCccccCCCCHHHHHHHHHHHHHHHHhcCccEEEEe
Q 003901 344 HTVEGNDKGPILSFRGVDNSVYYMLAPKGEFYNY-SGCGNTFNCNHPVVRQFIVDCLRYWVTEMHVDGFRFD 414 (788)
Q Consensus 344 H~~~~~~~~~~~~~~~~~~~~yy~~~~~g~~~~~-~g~~~dln~~~p~vr~~i~d~l~~W~~e~gVDGFR~D 414 (788)
-..-. +..|.. .. .++++.-..- ..+-..|.--+|++|+.|.+...-....-.|||+=|.
T Consensus 405 ~~~l~-~~~~~~--------~~--~~~~~~~~~~~~~~y~rlspf~~~~~~~i~~iy~DLa~~~~~~Gilfh 465 (672)
T PRK14581 405 AFDMD-PSLPRI--------TR--IDPKTGKTSIDPDQYRRLSPFNPEVRQRIIDIYRDMAYSAPIDGIIYH 465 (672)
T ss_pred hccCC-cccchh--------hh--cccccCccccCCCCccccCCCCHHHHHHHHHHHHHHHhcCCCCeEEec
Confidence 22110 000000 00 0111100000 0001234555799999999999999965699999984
No 268
>cd06549 GH18_trifunctional GH18 domain of an uncharacterized family of bacterial proteins, which share a common three-domain architecture: an N-terminal glycosyl hydrolase family 18 (GH18) domain, a glycosyl transferase family 2 domain, and a C-terminal polysaccharide deacetylase domain.
Probab=21.78 E-value=94 Score=33.43 Aligned_cols=31 Identities=16% Similarity=0.354 Sum_probs=26.9
Q ss_pred CCCHHHHHHHHHHHHHHHHhcCccEEEEecc
Q 003901 386 CNHPVVRQFIVDCLRYWVTEMHVDGFRFDLA 416 (788)
Q Consensus 386 ~~~p~vr~~i~d~l~~W~~e~gVDGFR~D~a 416 (788)
..++..|+.+++++..+++++|.||+-||--
T Consensus 83 l~~~~~R~~fi~~iv~~~~~~~~dGidiD~E 113 (298)
T cd06549 83 LADPSARAKFIANIAAYLERNQADGIVLDFE 113 (298)
T ss_pred hcCHHHHHHHHHHHHHHHHHhCCCCEEEecC
Confidence 3567889999999999999999999999964
No 269
>PRK09936 hypothetical protein; Provisional
Probab=21.53 E-value=2.4e+02 Score=30.17 Aligned_cols=58 Identities=14% Similarity=0.188 Sum_probs=40.1
Q ss_pred HHHHHhhhHHHHHcCCCeEEECcccccCccCcccCCCCCCCcccCCCCCCCCCC-CcHHHHHHHHHHHHHcCCEEEEEee
Q 003901 263 YLGVVEKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYNYSSAGIRNCGH-DAINEFKLLVREAHKRGIEVVMDVV 341 (788)
Q Consensus 263 ~~gl~~~L~yLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~wgY~~~~~~~~~~-G~~~elk~lV~~aH~~Gi~VilDvV 341 (788)
-....+.+..++.+|+++|.+- .. +|... .+ |..--|...+++|++.||+|++=+-
T Consensus 37 ~~qWq~~~~~~~~~G~~tLivQ----Wt--------------~yG~~-----~fg~~~g~La~~l~~A~~~Gl~v~vGL~ 93 (296)
T PRK09936 37 DTQWQGLWSQLRLQGFDTLVVQ----WT--------------RYGDA-----DFGGQRGWLAKRLAAAQQAGLKLVVGLY 93 (296)
T ss_pred HHHHHHHHHHHHHcCCcEEEEE----ee--------------eccCC-----CcccchHHHHHHHHHHHHcCCEEEEccc
Confidence 3556677899999999999642 11 22111 23 3355689999999999999987665
Q ss_pred ec
Q 003901 342 FN 343 (788)
Q Consensus 342 ~N 343 (788)
++
T Consensus 94 ~D 95 (296)
T PRK09936 94 AD 95 (296)
T ss_pred CC
Confidence 43
No 270
>PRK09593 arb 6-phospho-beta-glucosidase; Reviewed
Probab=21.45 E-value=2.1e+02 Score=33.20 Aligned_cols=69 Identities=16% Similarity=0.259 Sum_probs=46.5
Q ss_pred CCcCHHHHHhhhHHHHHcCCCeEEECcccccCccCcccCCCCCCCcccCCCCCC-CCCCCcHHHHHHHHHHHHHcCCEEE
Q 003901 259 HPGTYLGVVEKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYNYSSAGIR-NCGHDAINEFKLLVREAHKRGIEVV 337 (788)
Q Consensus 259 ~~G~~~gl~~~L~yLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~wgY~~~~~~-~~~~G~~~elk~lV~~aH~~Gi~Vi 337 (788)
....|.-..|.|+.+|+||+++--++=-+.- .-+.+.. ...-..++=.++||++|+++||+.|
T Consensus 68 a~d~Yhry~eDi~Lm~~lG~~aYRfSIsWsR----------------I~P~G~~~~~N~~gl~~Y~~lId~L~~~GI~P~ 131 (478)
T PRK09593 68 AIDMYHHYKEDIALFAEMGFKTYRMSIAWTR----------------IFPKGDELEPNEAGLQFYEDIFKECHKYGIEPL 131 (478)
T ss_pred ccchHHhhHHHHHHHHHcCCCEEEEecchhh----------------cccCCCCCCCCHHHHHHHHHHHHHHHHcCCEEE
Confidence 3456888999999999999999876543321 1111100 0011245668999999999999999
Q ss_pred EEeeeccc
Q 003901 338 MDVVFNHT 345 (788)
Q Consensus 338 lDvV~NH~ 345 (788)
+-+. |.
T Consensus 132 VTL~--H~ 137 (478)
T PRK09593 132 VTIT--HF 137 (478)
T ss_pred EEec--cc
Confidence 7654 64
No 271
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=21.35 E-value=3.6e+02 Score=28.90 Aligned_cols=62 Identities=15% Similarity=0.146 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHcCCEEEEEeeeccccCCCCCCCccccCCCCCccceeeCCCCCcccCCCCccccCCCCHHHHHHHHHH
Q 003901 319 INEFKLLVREAHKRGIEVVMDVVFNHTVEGNDKGPILSFRGVDNSVYYMLAPKGEFYNYSGCGNTFNCNHPVVRQFIVDC 398 (788)
Q Consensus 319 ~~elk~lV~~aH~~Gi~VilDvV~NH~~~~~~~~~~~~~~~~~~~~yy~~~~~g~~~~~~g~~~dln~~~p~vr~~i~d~ 398 (788)
.+.++++|+.|+++|++|..-+.+-.....+ |. . --+++.+.
T Consensus 119 l~~~~~~v~~ak~~g~~v~~~i~~~~~~~~~----------------------~~-------------~---~~~~~~~~ 160 (287)
T PRK05692 119 LERFEPVAEAAKQAGVRVRGYVSCVLGCPYE----------------------GE-------------V---PPEAVADV 160 (287)
T ss_pred HHHHHHHHHHHHHcCCEEEEEEEEEecCCCC----------------------CC-------------C---CHHHHHHH
Confidence 4569999999999999998777653322110 00 0 12667778
Q ss_pred HHHHHHhcCccEEEE-eccccc
Q 003901 399 LRYWVTEMHVDGFRF-DLASIM 419 (788)
Q Consensus 399 l~~W~~e~gVDGFR~-D~a~~l 419 (788)
++... +.|+|.+++ |.++.+
T Consensus 161 ~~~~~-~~G~d~i~l~DT~G~~ 181 (287)
T PRK05692 161 AERLF-ALGCYEISLGDTIGVG 181 (287)
T ss_pred HHHHH-HcCCcEEEeccccCcc
Confidence 88887 899999998 666655
No 272
>PRK00164 moaA molybdenum cofactor biosynthesis protein A; Reviewed
Probab=21.25 E-value=2.2e+02 Score=30.93 Aligned_cols=51 Identities=18% Similarity=0.136 Sum_probs=38.3
Q ss_pred CcCHHHHHhhhHHHHHcCCCeEEECcccccCccCcccCCCCCCCcccCCCCCCCCCCCcHHHHHHHHHHHHHcCCEE
Q 003901 260 PGTYLGVVEKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYNYSSAGIRNCGHDAINEFKLLVREAHKRGIEV 336 (788)
Q Consensus 260 ~G~~~gl~~~L~yLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~wgY~~~~~~~~~~G~~~elk~lV~~aH~~Gi~V 336 (788)
.++|..+.+.|+.++++|+..|.+.-+.-. --+.+|+.+|++-+++.|+.|
T Consensus 140 ~~~~~~vl~~i~~~~~~g~~~v~i~~vv~~--------------------------g~n~~ei~~l~~~~~~~gv~v 190 (331)
T PRK00164 140 RDRLDQVLAGIDAALAAGLTPVKVNAVLMK--------------------------GVNDDEIPDLLEWAKDRGIQL 190 (331)
T ss_pred CCCHHHHHHHHHHHHHCCCCcEEEEEEEEC--------------------------CCCHHHHHHHHHHHHhCCCeE
Confidence 478999999999999999966665433210 013478999999999999876
No 273
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=21.21 E-value=1.6e+02 Score=30.98 Aligned_cols=54 Identities=20% Similarity=0.085 Sum_probs=36.2
Q ss_pred HHHhhhHHHHHcCCCeEEECcccccCccCcccCCCCCCCcccCCCCCCCCCCCcHHHHHHHHHHHHHcCCEEEE
Q 003901 265 GVVEKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYNYSSAGIRNCGHDAINEFKLLVREAHKRGIEVVM 338 (788)
Q Consensus 265 gl~~~L~yLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~wgY~~~~~~~~~~G~~~elk~lV~~aH~~Gi~Vil 338 (788)
.+.+.++-++++|+++|+|.+- +.. .+ +.+.--+.++++++-+.+.+.||+|..
T Consensus 22 ~~~e~~~~~~~~G~~~iEl~~~-~~~--------------~~-----~~~~~~~~~~~~~l~~~l~~~gl~i~~ 75 (283)
T PRK13209 22 CWLEKLAIAKTAGFDFVEMSVD-ESD--------------ER-----LARLDWSREQRLALVNALVETGFRVNS 75 (283)
T ss_pred CHHHHHHHHHHcCCCeEEEecC-ccc--------------cc-----hhccCCCHHHHHHHHHHHHHcCCceeE
Confidence 3567889999999999999532 100 00 000011467788888899999999863
No 274
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=21.11 E-value=1.9e+02 Score=30.06 Aligned_cols=48 Identities=17% Similarity=0.207 Sum_probs=36.1
Q ss_pred HHhhhHHHHHcCCCeEEECcccccCccCcccCCCCCCCcccCCCCCCCCCCCcHHHHHHHHHHHHHcCCEEEEEeeecc
Q 003901 266 VVEKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYNYSSAGIRNCGHDAINEFKLLVREAHKRGIEVVMDVVFNH 344 (788)
Q Consensus 266 l~~~L~yLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~wgY~~~~~~~~~~G~~~elk~lV~~aH~~Gi~VilDvV~NH 344 (788)
+..-++.+++.|++.|-+.-+ ..++++.+++.|+++||+.++=+.++-
T Consensus 93 ~~~fi~~~~~aG~~giiipDl-------------------------------~~ee~~~~~~~~~~~g~~~i~~i~P~T 140 (242)
T cd04724 93 LERFLRDAKEAGVDGLIIPDL-------------------------------PPEEAEEFREAAKEYGLDLIFLVAPTT 140 (242)
T ss_pred HHHHHHHHHHCCCcEEEECCC-------------------------------CHHHHHHHHHHHHHcCCcEEEEeCCCC
Confidence 455678888888888765321 136899999999999999998666554
No 275
>COG3669 Alpha-L-fucosidase [Carbohydrate transport and metabolism]
Probab=21.06 E-value=1.2e+03 Score=26.19 Aligned_cols=91 Identities=12% Similarity=0.140 Sum_probs=55.7
Q ss_pred CCCeEEEEEeccCcccCCCCCCCCCcCHHHHHh-----------hhHHHHHcCCCeEEECcccccCc-cCcccCCCCCCC
Q 003901 236 QRDLIIYEVHVRGFTRHESSKTEHPGTYLGVVE-----------KLDHLKDLGINCLELMPCHEFNE-LEYFSYNSVLGD 303 (788)
Q Consensus 236 ~~~~viYei~v~~Ft~~~~s~~~~~G~~~gl~~-----------~L~yLk~LGvt~I~L~Pi~~~~~-~~~~~~~~~~~~ 303 (788)
.+...+|+-|+..|.+.. -|+++..++ -..-+|+.|...|- |+.++.. ..-+..
T Consensus 21 ~e~~~~~~fh~nT~~dq~------~f~~~~f~~~Ftae~wDP~eWar~fK~aGAKyvi--lvakHHDGFaLw~t------ 86 (430)
T COG3669 21 QEGSPFYHFHPNTYGDQE------WFGGQEFPPRFTAENWDPREWARLFKEAGAKYVI--LVAKHHDGFALWPT------ 86 (430)
T ss_pred ccCCceEEeccccccCcc------cccccccccccCcccCCHHHHHHHHHHcCCcEEE--EeeeecCCeeeccc------
Confidence 356788999999887632 245555544 25778999988664 5555321 110110
Q ss_pred cccCCCCCCCCCCCcHHH-HHHHHHHHHHcCCEEEEEeeecccc
Q 003901 304 YNYSSAGIRNCGHDAINE-FKLLVREAHKRGIEVVMDVVFNHTV 346 (788)
Q Consensus 304 wgY~~~~~~~~~~G~~~e-lk~lV~~aH~~Gi~VilDvV~NH~~ 346 (788)
.|+.- ..+..|...| ++++.+++.++||+. .|++|-+
T Consensus 87 -~ys~w--nsvk~GpKrDlvgela~Avr~qGL~F---Gvy~s~a 124 (430)
T COG3669 87 -DYSVW--NSVKRGPKRDLVGELAKAVREQGLRF---GVYLSGA 124 (430)
T ss_pred -ccccc--cccccCCcccHHHHHHHHHHHcCCee---eEeeccC
Confidence 22222 2345555444 678888889999986 5788866
No 276
>PRK09257 aromatic amino acid aminotransferase; Provisional
Probab=21.05 E-value=2e+02 Score=32.02 Aligned_cols=60 Identities=12% Similarity=0.175 Sum_probs=41.9
Q ss_pred CHHHHHhhhHHHHHcCC-CeEEECcccccCccCcccCCCCCCCcccCCCCCCCCCCCcHHHHHHHHHHHHHcCCEEEEEe
Q 003901 262 TYLGVVEKLDHLKDLGI-NCLELMPCHEFNELEYFSYNSVLGDYNYSSAGIRNCGHDAINEFKLLVREAHKRGIEVVMDV 340 (788)
Q Consensus 262 ~~~gl~~~L~yLk~LGv-t~I~L~Pi~~~~~~~~~~~~~~~~~wgY~~~~~~~~~~G~~~elk~lV~~aH~~Gi~VilDv 340 (788)
++..+.+.+ ++... +.++++|-..+++.. -=+.++++++++.|+++|+-||.|-
T Consensus 158 d~~~l~~~~---~~~~~~~~~~i~~~p~NPTG~----------------------~~s~~~~~~l~~~a~~~~~~ii~De 212 (396)
T PRK09257 158 DFDAMLADL---SQAPAGDVVLLHGCCHNPTGA----------------------DLTPEQWDELAELLKERGLIPFLDI 212 (396)
T ss_pred CHHHHHHHH---HhCCCCCEEEEeCCCCCCCCC----------------------CCCHHHHHHHHHHHHhCCcEEEEec
Confidence 455554443 33333 688888865544321 1158999999999999999999999
Q ss_pred eecccc
Q 003901 341 VFNHTV 346 (788)
Q Consensus 341 V~NH~~ 346 (788)
+|.+..
T Consensus 213 ~Y~~l~ 218 (396)
T PRK09257 213 AYQGFG 218 (396)
T ss_pred cccccc
Confidence 988764
No 277
>TIGR03565 alk_sulf_monoox alkanesulfonate monooxygenase, FMNH(2)-dependent. Members of this protein family are monooxygenases that catalyze desulfonation of aliphatic sulfonates such as methane sulfonate. This enzyme uses reduced FMN, although various others members of the same luciferase-like monooxygenase family (pfam00296) are F420-dependent enzymes.
Probab=21.03 E-value=1.1e+02 Score=33.69 Aligned_cols=28 Identities=25% Similarity=0.332 Sum_probs=25.5
Q ss_pred CCCcCHHHHHhhhHHHHHcCCCeEEECc
Q 003901 258 EHPGTYLGVVEKLDHLKDLGINCLELMP 285 (788)
Q Consensus 258 ~~~G~~~gl~~~L~yLk~LGvt~I~L~P 285 (788)
...||+..++++|..++++||+.+.|.+
T Consensus 301 ~lVGtpe~Va~~l~~~~~~Gv~~~~L~~ 328 (346)
T TIGR03565 301 ALVGDPETVAARIREYQDLGIDTFILSG 328 (346)
T ss_pred ceeCCHHHHHHHHHHHHHcCCcEEEecC
Confidence 4679999999999999999999999884
No 278
>TIGR01233 lacG 6-phospho-beta-galactosidase. This enzyme is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=21.00 E-value=1.9e+02 Score=33.29 Aligned_cols=102 Identities=15% Similarity=0.233 Sum_probs=65.1
Q ss_pred CcCHHHHHhhhHHHHHcCCCeEEECcccccCccCcccCCCCCCCcccCCCCCCCCCCCcHHHHHHHHHHHHHcCCEEEEE
Q 003901 260 PGTYLGVVEKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYNYSSAGIRNCGHDAINEFKLLVREAHKRGIEVVMD 339 (788)
Q Consensus 260 ~G~~~gl~~~L~yLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~wgY~~~~~~~~~~G~~~elk~lV~~aH~~Gi~VilD 339 (788)
...|....+.+.-+|+||+++--++=-+. +.-+.+.-...-..++=.++||++|.++||+.|+-
T Consensus 49 ~d~yhry~eDi~L~~~lG~~~yRfSIsWs----------------RI~P~g~~~~N~~gl~~Y~~lid~l~~~GI~P~VT 112 (467)
T TIGR01233 49 SDFYHKYPVDLELAEEYGVNGIRISIAWS----------------RIFPTGYGEVNEKGVEFYHKLFAECHKRHVEPFVT 112 (467)
T ss_pred CchhhhHHHHHHHHHHcCCCEEEEecchh----------------hccCCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEe
Confidence 45688889999999999999987643222 11111000001234666899999999999999875
Q ss_pred eeeccccCCCCCCCccccCCCCCccceeeCCCCCcccCCCCccccCCCCHHHHHHHHHHHHHHHHhcCcc
Q 003901 340 VVFNHTVEGNDKGPILSFRGVDNSVYYMLAPKGEFYNYSGCGNTFNCNHPVVRQFIVDCLRYWVTEMHVD 409 (788)
Q Consensus 340 vV~NH~~~~~~~~~~~~~~~~~~~~yy~~~~~g~~~~~~g~~~dln~~~p~vr~~i~d~l~~W~~e~gVD 409 (788)
+ .|..- +.+... .| -|.++++.+++.+-++.-+++|| |
T Consensus 113 L--~H~dl---------------P~~L~~--~G------------GW~n~~~v~~F~~YA~~~f~~fg-d 150 (467)
T TIGR01233 113 L--HHFDT---------------PEALHS--NG------------DFLNRENIEHFIDYAAFCFEEFP-E 150 (467)
T ss_pred c--cCCCC---------------cHHHHH--cC------------CCCCHHHHHHHHHHHHHHHHHhC-C
Confidence 4 46421 112110 01 13567888888888888888887 5
No 279
>PF00724 Oxidored_FMN: NADH:flavin oxidoreductase / NADH oxidase family; InterPro: IPR001155 The TIM-barrel fold is a closed barrel structure composed of an eight-fold repeat of beta-alpha units, where the eight parallel beta strands on the inside are covered by the eight alpha helices on the outside []. It is a widely distributed fold which has been found in many enzyme families that catalyse completely unrelated reactions []. The active site is always found at the C-terminal end of this domain. Proteins in this entry are a variety of NADH:flavin oxidoreductase/NADH oxidase enzymes, found mostly in bacteria or fungi, that contain a TIM-barrel fold. They commonly use FMN/FAD as cofactor and include: dimethylamine dehydrogenase trimethylamine dehydrogenase 12-oxophytodienoate reductase NADPH dehydrogenase NADH oxidase ; GO: 0010181 FMN binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GKA_B 3P67_A 3F03_K 2ABA_A 1VYR_A 1GVO_A 3KFT_B 3P8I_A 1GVQ_A 3P74_A ....
Probab=20.94 E-value=4.2e+02 Score=29.08 Aligned_cols=29 Identities=21% Similarity=0.342 Sum_probs=23.2
Q ss_pred cHHHHHHHHHHHHHcCCEEEEEeeeccccCC
Q 003901 318 AINEFKLLVREAHKRGIEVVMDVVFNHTVEG 348 (788)
Q Consensus 318 ~~~elk~lV~~aH~~Gi~VilDvV~NH~~~~ 348 (788)
.++.||++++++|++|-++++-+ +|.+..
T Consensus 78 ~i~~~k~l~~~vh~~Ga~i~~QL--~H~G~~ 106 (341)
T PF00724_consen 78 QIPGLKKLADAVHAHGAKIIAQL--WHAGRQ 106 (341)
T ss_dssp HHHHHHHHHHHHHHTTSEEEEEE--E--GGG
T ss_pred HHHHHHHHHHHHHhcCccceeec--cccccc
Confidence 47889999999999999999876 576643
No 280
>PRK01278 argD acetylornithine transaminase protein; Provisional
Probab=20.91 E-value=1.8e+02 Score=32.23 Aligned_cols=29 Identities=17% Similarity=0.083 Sum_probs=25.4
Q ss_pred cHHHHHHHHHHHHHcCCEEEEEeeecccc
Q 003901 318 AINEFKLLVREAHKRGIEVVMDVVFNHTV 346 (788)
Q Consensus 318 ~~~elk~lV~~aH~~Gi~VilDvV~NH~~ 346 (788)
+.+.+++|.+-|+++|+-+|.|=|+...+
T Consensus 194 ~~~~l~~l~~l~~~~g~~lI~DEv~~g~g 222 (389)
T PRK01278 194 PDEFLKGLRQLCDENGLLLIFDEVQCGMG 222 (389)
T ss_pred CHHHHHHHHHHHHHcCCEEEEeccccCCC
Confidence 46889999999999999999999986543
No 281
>PRK09989 hypothetical protein; Provisional
Probab=20.81 E-value=1.8e+02 Score=30.31 Aligned_cols=19 Identities=16% Similarity=0.557 Sum_probs=17.0
Q ss_pred HHhhhHHHHHcCCCeEEEC
Q 003901 266 VVEKLDHLKDLGINCLELM 284 (788)
Q Consensus 266 l~~~L~yLk~LGvt~I~L~ 284 (788)
+.+.|..++++|+++|+|.
T Consensus 17 l~~~l~~~~~~Gfd~VEl~ 35 (258)
T PRK09989 17 FIERFAAARKAGFDAVEFL 35 (258)
T ss_pred HHHHHHHHHHcCCCEEEEC
Confidence 6678999999999999984
No 282
>PLN02849 beta-glucosidase
Probab=20.78 E-value=1.8e+02 Score=33.97 Aligned_cols=69 Identities=16% Similarity=0.241 Sum_probs=46.0
Q ss_pred CCcCHHHHHhhhHHHHHcCCCeEEECcccccCccCcccCCCCCCCcccCCCCCCCCCCCcHHHHHHHHHHHHHcCCEEEE
Q 003901 259 HPGTYLGVVEKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYNYSSAGIRNCGHDAINEFKLLVREAHKRGIEVVM 338 (788)
Q Consensus 259 ~~G~~~gl~~~L~yLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~wgY~~~~~~~~~~G~~~elk~lV~~aH~~Gi~Vil 338 (788)
....|.-..|.|.-+|+||+++--++=-+. +.-+.+.-...-..++=.++||++|+++||+.|+
T Consensus 74 a~D~YhrY~eDI~Lm~~lG~~aYRfSIsWs----------------RI~P~G~g~vN~~gl~fY~~lid~l~~~GI~P~V 137 (503)
T PLN02849 74 ACDGYHKYKEDVKLMVETGLDAFRFSISWS----------------RLIPNGRGSVNPKGLQFYKNFIQELVKHGIEPHV 137 (503)
T ss_pred cccHHHhHHHHHHHHHHcCCCeEEEeccHH----------------hcCcCCCCCCCHHHHHHHHHHHHHHHHcCCeEEE
Confidence 455788899999999999999987643222 1111100000122466689999999999999997
Q ss_pred Eeeeccc
Q 003901 339 DVVFNHT 345 (788)
Q Consensus 339 DvV~NH~ 345 (788)
-+ .|.
T Consensus 138 TL--~H~ 142 (503)
T PLN02849 138 TL--FHY 142 (503)
T ss_pred ee--cCC
Confidence 65 464
No 283
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=20.69 E-value=3.1e+02 Score=28.92 Aligned_cols=58 Identities=19% Similarity=0.243 Sum_probs=41.4
Q ss_pred cHHHHHHHHHHHHHcCCEEEEEeeeccccCCCCCCCccccCCCCCccceeeCCCCCcccCCCCccccCCCCHHHHHHHHH
Q 003901 318 AINEFKLLVREAHKRGIEVVMDVVFNHTVEGNDKGPILSFRGVDNSVYYMLAPKGEFYNYSGCGNTFNCNHPVVRQFIVD 397 (788)
Q Consensus 318 ~~~elk~lV~~aH~~Gi~VilDvV~NH~~~~~~~~~~~~~~~~~~~~yy~~~~~g~~~~~~g~~~dln~~~p~vr~~i~d 397 (788)
..+.++++|+.++++|++|.+-+..-... -.+++.+
T Consensus 107 ~~~~~~~~i~~ak~~G~~v~~~~~~a~~~--------------------------------------------~~~~~~~ 142 (266)
T cd07944 107 EFDEALPLIKAIKEKGYEVFFNLMAISGY--------------------------------------------SDEELLE 142 (266)
T ss_pred cHHHHHHHHHHHHHCCCeEEEEEEeecCC--------------------------------------------CHHHHHH
Confidence 47889999999999999877655432210 0255667
Q ss_pred HHHHHHHhcCccEEEE-ecccccc
Q 003901 398 CLRYWVTEMHVDGFRF-DLASIMT 420 (788)
Q Consensus 398 ~l~~W~~e~gVDGFR~-D~a~~l~ 420 (788)
.++.-. ++|+|.+++ |.++.+.
T Consensus 143 ~~~~~~-~~g~~~i~l~DT~G~~~ 165 (266)
T cd07944 143 LLELVN-EIKPDVFYIVDSFGSMY 165 (266)
T ss_pred HHHHHH-hCCCCEEEEecCCCCCC
Confidence 777765 799999998 6666553
No 284
>PRK09589 celA 6-phospho-beta-glucosidase; Reviewed
Probab=20.52 E-value=2e+02 Score=33.30 Aligned_cols=69 Identities=19% Similarity=0.305 Sum_probs=46.1
Q ss_pred CCcCHHHHHhhhHHHHHcCCCeEEECcccccCccCcccCCCCCCCcccCCCCCC-CCCCCcHHHHHHHHHHHHHcCCEEE
Q 003901 259 HPGTYLGVVEKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYNYSSAGIR-NCGHDAINEFKLLVREAHKRGIEVV 337 (788)
Q Consensus 259 ~~G~~~gl~~~L~yLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~wgY~~~~~~-~~~~G~~~elk~lV~~aH~~Gi~Vi 337 (788)
....|....|.|.-+|+||+++--++=-+. +.-+.+.. ...-..++=.++||++|.++||+.|
T Consensus 62 a~D~Yhry~eDi~Lm~~lG~~~yRfSIsWs----------------RI~P~G~~~~~N~~gl~~Y~~lid~L~~~GI~P~ 125 (476)
T PRK09589 62 AIDFYHRYKEDIALFAEMGFKCFRTSIAWT----------------RIFPQGDELEPNEEGLQFYDDLFDECLKQGIEPV 125 (476)
T ss_pred cccHHHhhHHHHHHHHHcCCCEEEeccchh----------------hcCcCCCCCCCCHHHHHHHHHHHHHHHHcCCEEE
Confidence 345688889999999999999987543222 11111100 0012246668999999999999999
Q ss_pred EEeeeccc
Q 003901 338 MDVVFNHT 345 (788)
Q Consensus 338 lDvV~NH~ 345 (788)
+=+ .|.
T Consensus 126 VTL--~H~ 131 (476)
T PRK09589 126 VTL--SHF 131 (476)
T ss_pred EEe--cCC
Confidence 765 464
No 285
>PF00704 Glyco_hydro_18: Glycosyl hydrolases family 18; InterPro: IPR001223 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Some members of this family, GH18 from CAZY, belong to the chitinase class II group which includes chitinase, chitodextrinase and the killer toxin of Kluyveromyces lactis. The chitinases hydrolyse chitin oligosaccharides. The family also includes various glycoproteins from mammals; cartilage glycoprotein and the oviduct-specific glycoproteins are two examples.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1ITX_A 3ALG_A 3ALF_A 1NAR_A 3QOK_A 3G6L_A 3G6M_A 2DT1_A 2B31_A 2O92_A ....
Probab=20.50 E-value=1.1e+02 Score=33.26 Aligned_cols=31 Identities=19% Similarity=0.352 Sum_probs=25.2
Q ss_pred CHHHHHHHHHHHHHHHHhcCccEEEEecccc
Q 003901 388 HPVVRQFIVDCLRYWVTEMHVDGFRFDLASI 418 (788)
Q Consensus 388 ~p~vr~~i~d~l~~W~~e~gVDGFR~D~a~~ 418 (788)
++.-|+.+++.+..|+++||+||+-||--..
T Consensus 96 ~~~~r~~f~~~i~~~l~~y~~DGidiD~e~~ 126 (343)
T PF00704_consen 96 NPAKRQNFINNIVSFLKKYGFDGIDIDWEYP 126 (343)
T ss_dssp SHHHHHHHHHHHHHHHHHHT-SEEEEEESST
T ss_pred cHHHHHHHHHhhhhhhcccCcceeeeeeeec
Confidence 3567889999999999999999999986543
No 286
>PTZ00376 aspartate aminotransferase; Provisional
Probab=20.49 E-value=2e+02 Score=32.13 Aligned_cols=30 Identities=7% Similarity=0.222 Sum_probs=27.2
Q ss_pred cHHHHHHHHHHHHHcCCEEEEEeeeccccC
Q 003901 318 AINEFKLLVREAHKRGIEVVMDVVFNHTVE 347 (788)
Q Consensus 318 ~~~elk~lV~~aH~~Gi~VilDvV~NH~~~ 347 (788)
+.++++++++.|+++|+-||.|-+|.+...
T Consensus 194 s~~~~~~l~~~a~~~~~~ii~De~Y~~~~~ 223 (404)
T PTZ00376 194 TEEQWKEIADVMKRKNLIPFFDMAYQGFAS 223 (404)
T ss_pred CHHHHHHHHHHHHhCCcEEEEehhhcCccC
Confidence 589999999999999999999999988653
No 287
>cd02872 GH18_chitolectin_chitotriosidase This conserved domain family includes a large number of catalytically inactive chitinase-like lectins (chitolectins) including YKL-39, YKL-40 (HCGP39), YM1, oviductin, and AMCase (acidic mammalian chitinase), as well as catalytically active chitotriosidases. The conserved domain is an eight-stranded alpha/beta barrel fold belonging to the family 18 glycosyl hydrolases. The fold has a pronounced active-site cleft at the C-terminal end of the beta-barrel. The chitolectins lack a key active site glutamate (the proton donor required for hydrolytic activity) but retain highly conserved residues involved in oligosaccharide binding. Chitotriosidase is a chitinolytic enzyme expressed in maturing macrophages, which suggests that it plays a part in antimicrobial defense. Chitotriosidase hydrolyzes chitotriose, as well as colloidal chitin to yield chitobiose and is therefore considered an exochitinase. Chitotriosidase occurs in two major forms, the la
Probab=20.42 E-value=1e+02 Score=34.10 Aligned_cols=29 Identities=17% Similarity=0.344 Sum_probs=25.5
Q ss_pred CCHHHHHHHHHHHHHHHHhcCccEEEEec
Q 003901 387 NHPVVRQFIVDCLRYWVTEMHVDGFRFDL 415 (788)
Q Consensus 387 ~~p~vr~~i~d~l~~W~~e~gVDGFR~D~ 415 (788)
.++..|+.+++++..|++++++||+-+|-
T Consensus 92 ~~~~~r~~fi~~iv~~l~~~~~DGidiDw 120 (362)
T cd02872 92 ASPENRKTFIKSAIAFLRKYGFDGLDLDW 120 (362)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCCCeeeee
Confidence 45678898999999999999999999984
No 288
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=20.37 E-value=70 Score=31.60 Aligned_cols=45 Identities=18% Similarity=0.141 Sum_probs=33.4
Q ss_pred hHHHHHcCCCeEEECcccccCccCcccCCCCCCCcccCCCCCCCCCCCcHHHHHHHHHHHHHcCCEEEE
Q 003901 270 LDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYNYSSAGIRNCGHDAINEFKLLVREAHKRGIEVVM 338 (788)
Q Consensus 270 L~yLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~wgY~~~~~~~~~~G~~~elk~lV~~aH~~Gi~Vil 338 (788)
|..++++|++.|+|.+...... . . . ..+++++.+.+.+.||+|..
T Consensus 1 l~~~~~~G~~~vE~~~~~~~~~---------------~-----~-~---~~~~~~~~~~~~~~gl~i~~ 45 (213)
T PF01261_consen 1 LEAAAEAGFDGVELRFDDGQPW---------------D-----E-K---DDEAEELRRLLEDYGLKIAS 45 (213)
T ss_dssp HHHHHHTTHSEEEEEHHHHSHH---------------T-----H-H---HHHHHHHHHHHHHTTCEEEE
T ss_pred ChHHHHcCCCEEEEecCCCccc---------------c-----c-c---hHHHHHHHHHHHHcCCeEEE
Confidence 4678999999999988654210 0 0 0 57789999999999999654
No 289
>PF03644 Glyco_hydro_85: Glycosyl hydrolase family 85 ; InterPro: IPR005201 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of endo-beta-N-acetylglucosaminidases belong to the glycoside hydrolase family 85 (GH85 from CAZY). These enzymes work on a broad spectrum of substrates.; GO: 0033925 mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase activity, 0005737 cytoplasm; PDB: 2W92_A 2W91_A 2VTF_B 3FHQ_B 3FHA_D 3GDB_A.
Probab=20.11 E-value=1.6e+02 Score=32.03 Aligned_cols=19 Identities=26% Similarity=0.613 Sum_probs=14.5
Q ss_pred HHHHHHHHcCCEEEEEeee
Q 003901 324 LLVREAHKRGIEVVMDVVF 342 (788)
Q Consensus 324 ~lV~~aH~~Gi~VilDvV~ 342 (788)
..|++||++|++|+==+.+
T Consensus 46 ~widaAHrnGV~vLGTiif 64 (311)
T PF03644_consen 46 GWIDAAHRNGVKVLGTIIF 64 (311)
T ss_dssp HHHHHHHHTT--EEEEEEE
T ss_pred hhHHHHHhcCceEEEEEEe
Confidence 4789999999999887777
No 290
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=20.09 E-value=2.1e+02 Score=29.26 Aligned_cols=48 Identities=17% Similarity=0.320 Sum_probs=38.6
Q ss_pred CcCHHHHHhhhHHHHHcCCCeEEECcccccCccCcccCCCCCCCcccCCCCCCCCCCCcHHHHHHHHHHHHHcCCEEEE
Q 003901 260 PGTYLGVVEKLDHLKDLGINCLELMPCHEFNELEYFSYNSVLGDYNYSSAGIRNCGHDAINEFKLLVREAHKRGIEVVM 338 (788)
Q Consensus 260 ~G~~~gl~~~L~yLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~~wgY~~~~~~~~~~G~~~elk~lV~~aH~~Gi~Vil 338 (788)
.++-....+.|+.+...|+++|-+.|+.. +.+..++++|.++||.||+
T Consensus 38 ~~d~~~q~~~i~~~i~~~~d~Iiv~~~~~-------------------------------~~~~~~l~~~~~~gIpvv~ 85 (257)
T PF13407_consen 38 QNDPEEQIEQIEQAISQGVDGIIVSPVDP-------------------------------DSLAPFLEKAKAAGIPVVT 85 (257)
T ss_dssp TTTHHHHHHHHHHHHHTTESEEEEESSST-------------------------------TTTHHHHHHHHHTTSEEEE
T ss_pred CCCHHHHHHHHHHHHHhcCCEEEecCCCH-------------------------------HHHHHHHHHHhhcCceEEE
Confidence 36677788888888899999998888643 2266788899999999988
No 291
>cd00615 Orn_deC_like Ornithine decarboxylase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to ornithine decarboxylase (ODC), arginine decarboxylase (ADC) and lysine decarboxylase (LDC). ODC is a dodecamer composed of six homodimers and catalyzes the decarboxylation of tryptophan. ADC catalyzes the decarboxylation of arginine and LDC catalyzes the decarboxylation of lysine. Members of this family are widely found in all three forms of life.
Probab=20.02 E-value=71 Score=34.12 Aligned_cols=27 Identities=30% Similarity=0.501 Sum_probs=24.4
Q ss_pred CCcHHHHHHHHHHHHHcCCEEEEEeee
Q 003901 316 HDAINEFKLLVREAHKRGIEVVMDVVF 342 (788)
Q Consensus 316 ~G~~~elk~lV~~aH~~Gi~VilDvV~ 342 (788)
.|...+++++++.||++|+.||+|-+.
T Consensus 166 ~G~~~dl~~I~~~~~~~g~~livDeA~ 192 (294)
T cd00615 166 YGICYNLRKIVEEAHHRGLPVLVDEAH 192 (294)
T ss_pred CCEecCHHHHHHHHHhcCCeEEEECcc
Confidence 577788999999999999999999874
Done!