Query 003902
Match_columns 788
No_of_seqs 49 out of 51
Neff 2.6
Searched_HMMs 46136
Date Thu Mar 28 14:03:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003902.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003902hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF01843 DIL: DIL domain; Int 98.4 8.7E-08 1.9E-12 84.4 2.5 104 510-657 1-104 (105)
2 PF07334 IFP_35_N: Interferon- 49.3 25 0.00054 31.9 4.0 25 255-279 4-28 (76)
3 PF02007 MtrH: Tetrahydrometha 46.2 13 0.00029 40.4 2.2 43 539-582 183-238 (296)
4 PRK14127 cell division protein 35.0 92 0.002 29.7 5.6 57 253-314 39-103 (109)
5 PHA03297 envelope glycoprotein 34.5 31 0.00066 35.2 2.5 53 658-711 116-171 (185)
6 COG1962 MtrH Tetrahydromethano 31.5 34 0.00074 37.3 2.4 40 540-582 192-246 (313)
7 COG1865 cbiZ Adenosylcobinamid 26.5 24 0.00053 36.6 0.4 34 642-675 27-60 (200)
8 PF08181 DegQ: DegQ (SacQ) fam 23.1 1.2E+02 0.0026 25.3 3.6 23 257-279 3-25 (46)
9 PRK14143 heat shock protein Gr 22.9 2.9E+02 0.0062 29.5 7.3 20 257-276 66-85 (238)
10 PF01004 Flavi_M: Flavivirus e 22.1 65 0.0014 29.1 2.1 22 411-432 16-37 (75)
11 PF05377 FlaC_arch: Flagella a 21.5 1.3E+02 0.0027 26.1 3.6 32 255-290 18-49 (55)
12 PF15249 GLTSCR1: Glioma tumor 20.9 48 0.001 30.7 1.1 53 484-536 24-88 (109)
No 1
>PF01843 DIL: DIL domain; InterPro: IPR018444 Dilute encodes a novel type of myosin heavy chain, with a tail, or C-terminal, region that has elements of both type II (alpha-helical coiled-coil) and type I (non-coiled-coil) myosin heavy chains. The DIL non alpha-helical domain is found in dilute myosin heavy chain proteins and other myosins. In mouse the dilute protein may play a role in the elaboration, maintenance, or function of cellular processes of melanocytes and neurons []. The MYO2 protein of Saccharomyces cerevisiae is implicated in vectorial vesicle transport and is homologous to the dilute protein over practically its entire length [].; PDB: 3MMI_B 2F6H_X.
Probab=98.45 E-value=8.7e-08 Score=84.44 Aligned_cols=104 Identities=23% Similarity=0.504 Sum_probs=83.1
Q ss_pred HHHHHHHHHhHHHHHHHHhhccCCCCCCCCCCCCccCCcccccCCCCccccccchhhhhhhhhHHHHHhhhCCCCCCCCC
Q 003902 510 MVMEQCVARLDVAMFNAILRESANEIPTDPVSDPILDSKVLPIPAGDLSFGSGAQLKNSVGNWSRWLTDMFGMDTDDSPK 589 (788)
Q Consensus 510 lVMEqcVaRLDVAMFNAILRESa~eiPTDPiSDPI~D~kVLPIPaG~lSFGaGAQLKnaIgnWSRwLtDlFGid~dd~~~ 589 (788)
+++.|+.--+++-.||.||-.. .-.++-.|+|+|.-|+.-..|+... |+...
T Consensus 1 Q~f~qlf~~i~~~~fN~ll~~~-----------------------~~~~~~~g~qi~~nls~l~~W~~~~-~l~~~---- 52 (105)
T PF01843_consen 1 QLFSQLFHYINASLFNSLLLRR-----------------------KYCSWSKGVQIRYNLSELEDWARSH-GLEEA---- 52 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHCHS-----------------------S-B-HHHHHHHHHHHHHHHHCCCCT-TSTTH----
T ss_pred CHHHHHHHHHHHHHHHHHHCCC-----------------------CccccccHHHHHHHHHHHHHHHHhc-ccchh----
Confidence 4678999999999999999521 2279999999999999999998876 44211
Q ss_pred CCCCCCCCCCCCCCCCCCcchhhhhhhhcccccccccccCchhhhhccCCcchHHHHHHhccCCCCCC
Q 003902 590 EDQDFTEDDDGQDGVGEPKSFILLNSFSDLLMLPKDMLMDRSIRQEVCPLISLSLVKRILCNFTPDEF 657 (788)
Q Consensus 590 ~~~~~~~~~~~~~~~~~~k~F~LLnalSDLLMLPKDML~D~SiRkEVCPs~~lpLIkRIL~NF~PDEF 657 (788)
-...|.-|+.+++||+++|..+.|-..++++||+++..-|.+||.+|.||++
T Consensus 53 ----------------~~~~l~~l~Qa~~lL~~~k~~~~d~~~~~~~c~~Ln~~Qi~~iL~~Y~~~~~ 104 (105)
T PF01843_consen 53 ----------------AEEHLQPLSQAANLLQLRKSTLQDWDSLRETCPSLNPAQIRKILSNYQPDDY 104 (105)
T ss_dssp -----------------HHHCHHHHHHHHHCCC--SSHHHHHHHCCCTTTS-HHHHHHHHCCB---TT
T ss_pred ----------------HHHHHHHHHHHHHHHHhcCcchhHHHHHHHHcccCCHHHHHHHHHhCCCcCC
Confidence 2468999999999999999999999999999999999999999999999986
No 2
>PF07334 IFP_35_N: Interferon-induced 35 kDa protein (IFP 35) N-terminus; InterPro: IPR009938 This entry represents the N terminus of interferon-induced 35 kDa protein (IFP 35) (approximately 80 residues long), which contains a leucine zipper motif in an alpha helical configuration []. This group of proteins also includes N-myc-interactor (Nmi), a homologous interferon-induced protein.
Probab=49.32 E-value=25 Score=31.89 Aligned_cols=25 Identities=24% Similarity=0.399 Sum_probs=21.1
Q ss_pred hHhHhHHHHHHHHHHHHHHHHHHHH
Q 003902 255 NLNQKIEEMELRIEKLEEELRDVAA 279 (788)
Q Consensus 255 ~~~~kieele~rie~LE~ELREaAA 279 (788)
.+..++.+|+.+|.|||.||.+...
T Consensus 4 ei~eEn~~Lk~eiqkle~ELq~~~~ 28 (76)
T PF07334_consen 4 EIQEENARLKEEIQKLEAELQQNKR 28 (76)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3566777899999999999999766
No 3
>PF02007 MtrH: Tetrahydromethanopterin S-methyltransferase MtrH subunit; InterPro: IPR023467 In archaea the enzyme tetrahydromethanopterin S-methyltransferase is composed of eight subunits, MtrA-H. The enzyme is a membrane- associated enzyme complex which catalyzes an energy-conserving, sodium-ion-translocating step in methanogenesis from hydrogen and carbon dioxide []. Subunit MtrH catalyzes the methylation reaction and was shown to exhibit methyltetrahydromethanopterin:cob(I)alamin methyltransferase activity []. CH3-H4MPT + cob(I)alamin --> H4MPT + CH3-cob(III)alamin (H4MPT = tetrahydromethanopterin); GO: 0008168 methyltransferase activity, 0006730 one-carbon metabolic process
Probab=46.24 E-value=13 Score=40.44 Aligned_cols=43 Identities=26% Similarity=0.719 Sum_probs=33.2
Q ss_pred CCCCCccCCcccccCCCC-cc------------ccccchhhhhhhhhHHHHHhhhCC
Q 003902 539 PVSDPILDSKVLPIPAGD-LS------------FGSGAQLKNSVGNWSRWLTDMFGM 582 (788)
Q Consensus 539 PiSDPI~D~kVLPIPaG~-lS------------FGaGAQLKnaIgnWSRwLtDlFGi 582 (788)
=|..||.|..|+|+|.|. .+ +=.|--.-|+.+.| .||.++.+-
T Consensus 183 GI~~~LvD~~v~plgsg~g~s~r~~~~vK~~~G~P~G~a~hN~~s~W-~wlr~~~k~ 238 (296)
T PF02007_consen 183 GIENPLVDTAVTPLGSGAGISIRAIFAVKAKFGYPVGCAIHNAPSAW-KWLREYKKK 238 (296)
T ss_pred CCcceeecccccCCcccchHHHHHHHHHHHHhCCCcccccccchhHH-HHHHHhccc
Confidence 467799999999999976 22 22455556999999 999998654
No 4
>PRK14127 cell division protein GpsB; Provisional
Probab=34.96 E-value=92 Score=29.73 Aligned_cols=57 Identities=16% Similarity=0.286 Sum_probs=33.2
Q ss_pred hhhHhHhHHHHHHHHHHHHHHHHHHHHHHhhhhcccccCCCCccccCch--------hhhhhHHHHHHhc
Q 003902 253 EANLNQKIEEMELRIEKLEEELRDVAALEISLYSVVPEHGSSAHKVHSP--------ARRLSRIYIHACK 314 (788)
Q Consensus 253 ~~~~~~kieele~rie~LE~ELREaAAlEvsLYSVVaEHGSSshKvHtP--------ARRLSRlYiHAcK 314 (788)
-..+..++.+|+.++..|+++|.+.-+ .++-|.-..++ ++.-.+ .+|||||=-|-+.
T Consensus 39 ye~l~~e~~~Lk~e~~~l~~~l~e~~~-~~~~~~~~~~~----~~~~~~~~~tn~DiLKRls~LEk~VFg 103 (109)
T PRK14127 39 YEAFQKEIEELQQENARLKAQVDELTK-QVSVGASSSSV----ATTQPSSSATNYDILKRLSNLEKHVFG 103 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-hhccccccccc----cccCCCCCcchHHHHHHHHHHHHHHhc
Confidence 345566777788888888888776655 44433222221 111111 5899999777654
No 5
>PHA03297 envelope glycoprotein L; Provisional
Probab=34.49 E-value=31 Score=35.17 Aligned_cols=53 Identities=28% Similarity=0.404 Sum_probs=42.3
Q ss_pred CCCCCChHHHHHhhhhhhHhhhhcCCCCCCCC---CcCCCccccCCChhhHHHHHhh
Q 003902 658 CPDAVPGAVLEALNAESIIERRLSGDSARSFP---YTAAPVEYNPPSSSDVAEKVAE 711 (788)
Q Consensus 658 cPDPVP~~VlEaLnsE~~~E~~~~~dsi~~fP---c~aaPv~Y~PPs~~~va~~v~e 711 (788)
-|+-+-+.++++|+. ++...+.+.|++++-| |...|.+.+||-+-+||+-+.+
T Consensus 116 ~p~D~k~~LldaLd~-al~~~q~spD~st~pP~lGCv~Gpffls~p~sk~iaeg~kd 171 (185)
T PHA03297 116 MPQDFKEKLLFALDD-SLSQSQSSPDEILGPPPLGCFTGPFFLSPPKSKDIAEGLKD 171 (185)
T ss_pred cchHHHHHHHHHHHH-HHhhcccCCccccCCCCCCceecceecCCcchhhHHhhhhc
Confidence 455666888999874 4555557889998877 9999999999999999987755
No 6
>COG1962 MtrH Tetrahydromethanopterin S-methyltransferase, subunit H [Coenzyme metabolism]
Probab=31.55 E-value=34 Score=37.28 Aligned_cols=40 Identities=33% Similarity=0.786 Sum_probs=29.6
Q ss_pred CCCCccCCcccccCCCC---------------ccccccchhhhhhhhhHHHHHhhhCC
Q 003902 540 VSDPILDSKVLPIPAGD---------------LSFGSGAQLKNSVGNWSRWLTDMFGM 582 (788)
Q Consensus 540 iSDPI~D~kVLPIPaG~---------------lSFGaGAQLKnaIgnWSRwLtDlFGi 582 (788)
|-.|+.|..|.|++.|. ++-|+|. -|+.+.| .||.+.++-
T Consensus 192 I~~pliD~avtplg~Gagaa~r~~~~vK~k~G~PvGsg~--HN~psaW-dwlr~~~kk 246 (313)
T COG1962 192 IKKPLIDTAVTPLGSGAGAAVRATIAVKAKLGLPVGSGI--HNAPSAW-DWLREFKKK 246 (313)
T ss_pred CCccccccccccCCCCcchhhhhhhhhHHhcCCccCccc--ccCchHH-HHHHHHHhh
Confidence 34699999999999863 4455554 5888888 488888654
No 7
>COG1865 cbiZ Adenosylcobinamide amidohydrolase [Coenzyme metabolism]
Probab=26.55 E-value=24 Score=36.57 Aligned_cols=34 Identities=24% Similarity=0.465 Sum_probs=27.9
Q ss_pred hHHHHHHhccCCCCCCCCCCCChHHHHHhhhhhh
Q 003902 642 LSLVKRILCNFTPDEFCPDAVPGAVLEALNAESI 675 (788)
Q Consensus 642 lpLIkRIL~NF~PDEFcPDPVP~~VlEaLnsE~~ 675 (788)
.-.++.+...+||++||||++-+.+.+-|..-.+
T Consensus 27 ~~~~~~~~n~~Vp~~y~~d~~~~~~~~~l~~~gl 60 (200)
T COG1865 27 FKRVRTVINKTVPKDYSPDVPEGYVTEFLSKLGL 60 (200)
T ss_pred hheeeeEEEEECCcccCCCchHHHHHHHHHHcCC
Confidence 4467788999999999999999988887776554
No 8
>PF08181 DegQ: DegQ (SacQ) family; InterPro: IPR012554 This family consists of the DegQ (formerly sacQ) regulatory peptides. The DegQ family of peptides control the rates of synthesis of a class of both secreted and intracellular degradative enzymes in Bacillus subtilis. DegQ is 46 amino acids long and activates the synthesis of degradative enzymes. The expression of this peptide was shown to be subjected both to catabolite repression and DegS-DegU-mediated control. Thus allowing an increase in the rate of synthesis of degQ under conditions of nitrogen starvation [].
Probab=23.06 E-value=1.2e+02 Score=25.27 Aligned_cols=23 Identities=35% Similarity=0.591 Sum_probs=20.6
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHH
Q 003902 257 NQKIEEMELRIEKLEEELRDVAA 279 (788)
Q Consensus 257 ~~kieele~rie~LE~ELREaAA 279 (788)
.++||||++-+=+||-|+||..+
T Consensus 3 k~~ieelkqll~rle~eirett~ 25 (46)
T PF08181_consen 3 KKKIEELKQLLWRLENEIRETTD 25 (46)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHH
Confidence 46899999999999999999865
No 9
>PRK14143 heat shock protein GrpE; Provisional
Probab=22.86 E-value=2.9e+02 Score=29.46 Aligned_cols=20 Identities=25% Similarity=0.601 Sum_probs=12.2
Q ss_pred hHhHHHHHHHHHHHHHHHHH
Q 003902 257 NQKIEEMELRIEKLEEELRD 276 (788)
Q Consensus 257 ~~kieele~rie~LE~ELRE 276 (788)
...+.+|+.+|+.|++|+.+
T Consensus 66 ~~~~~~l~~el~~l~~e~~e 85 (238)
T PRK14143 66 AARLAQLEQELESLKQELEE 85 (238)
T ss_pred hhHHHHHHHHHHHHHHHHHH
Confidence 44455666666666666654
No 10
>PF01004 Flavi_M: Flavivirus envelope glycoprotein M; InterPro: IPR000069 Flaviviruses are small enveloped viruses with virions comprised of three proteins called C, M and E [, , ]. The envelope glycoprotein M is made as a precursor, called prM. The precursor portion of the protein is the signal peptide for the proteins entry into the membrane. prM is cleaved to form M in a late-stage cleavage event. Associated with this cleavage is a change in the infectivity and fusion activity of the virus.; GO: 0019058 viral infectious cycle, 0019028 viral capsid
Probab=22.10 E-value=65 Score=29.08 Aligned_cols=22 Identities=36% Similarity=0.758 Sum_probs=19.0
Q ss_pred CCccchhhHHHHHHhhhhhhhh
Q 003902 411 DEDWQEMGTFIAALQKVESWIF 432 (788)
Q Consensus 411 ~~dW~e~~Tf~~ALeKvEsWIF 432 (788)
.+-|-+......=|.|||+||.
T Consensus 16 ~~~Wl~~~~~~~hl~rvE~Wil 37 (75)
T PF01004_consen 16 GETWLDSDSAWKHLTRVESWIL 37 (75)
T ss_pred CcccccCccHHHHHHHHHHHHh
Confidence 4678888888889999999985
No 11
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=21.47 E-value=1.3e+02 Score=26.10 Aligned_cols=32 Identities=38% Similarity=0.696 Sum_probs=24.9
Q ss_pred hHhHhHHHHHHHHHHHHHHHHHHHHHHhhhhccccc
Q 003902 255 NLNQKIEEMELRIEKLEEELRDVAALEISLYSVVPE 290 (788)
Q Consensus 255 ~~~~kieele~rie~LE~ELREaAAlEvsLYSVVaE 290 (788)
.+...++++...|+++++=.+++ ++||-||+.
T Consensus 18 tvk~en~~i~~~ve~i~envk~l----l~lYE~Vs~ 49 (55)
T PF05377_consen 18 TVKKENEEISESVEKIEENVKDL----LSLYEVVSN 49 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHc
Confidence 55677778888888888888877 578988864
No 12
>PF15249 GLTSCR1: Glioma tumor suppressor candidate region
Probab=20.88 E-value=48 Score=30.68 Aligned_cols=53 Identities=21% Similarity=0.251 Sum_probs=29.8
Q ss_pred HHHHHHHccccCCCCCCCCchH-------H--HHHHHHHHHHHHhHH--HHHHH-HhhccCCCCC
Q 003902 484 FQDALQKLCPVRAGGHECGCLP-------V--LGRMVMEQCVARLDV--AMFNA-ILRESANEIP 536 (788)
Q Consensus 484 F~dA~eRLCP~RagghECGCLp-------v--LaRlVMEqcVaRLDV--AMFNA-ILRESa~eiP 536 (788)
+.||++||+|+.-=...=.=.. + ....++.+|+.|... .-||. ++|++.-..|
T Consensus 24 ~~DA~~RLLPYHv~~~~~~~~~d~~~~~~~d~~~e~~~~~~~~~~~~~~~k~~~ll~re~~r~~~ 88 (109)
T PF15249_consen 24 LEDAVERLLPYHVFQEPEEDEDDFEKASDWDEEFETVAAELLKRFEKMLNKYRRLLLRESMRDSP 88 (109)
T ss_pred HHHHHHHhcchhhhcCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCC
Confidence 6899999999853222111111 1 334556667777763 33664 4555555555
Done!