BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 003906
(787 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8LJT8|TKI1_ARATH TSL-kinase interacting protein 1 OS=Arabidopsis thaliana GN=TKI1
PE=1 SV=2
Length = 743
Score = 714 bits (1842), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 400/760 (52%), Positives = 500/760 (65%), Gaps = 68/760 (8%)
Query: 23 QDEDPRVVASSTLDNVILQQSAKRPTRQWAAWTREEEESFFTALRQVGKNFEKITHRVRS 82
Q+ +P +++S+++ I Q AK+PTRQWAAWT +EEESFFTALRQVGKNFEKIT RV+S
Sbjct: 29 QNSNPNLLSSASIS--ITQFPAKKPTRQWAAWTHQEEESFFTALRQVGKNFEKITSRVQS 86
Query: 83 KNKDQVRHYYYRLVRRMNKLLGPGLCLDAKNSKDTNAAMLRWWSLLEKYSCKASKLHLKP 142
KNKDQVRHYYYRLVRRMNKLLGP L LDAKN KDTNAAMLRWWSLLEKYSCKASKLHLKP
Sbjct: 87 KNKDQVRHYYYRLVRRMNKLLGPDLSLDAKNPKDTNAAMLRWWSLLEKYSCKASKLHLKP 146
Query: 143 RRFKIFVEALEHQLLKDRKRSVRKRPSQRDNYSPTVPTPIPNQSRTSGQDTCTVKLVLVD 202
RRFK+F+EALEHQLLKDR++S+RKR Q +N S I + SR G D KL+L D
Sbjct: 147 RRFKLFIEALEHQLLKDRRKSIRKRTCQGENLSSASLGNISSHSRERGLDNRPFKLILSD 206
Query: 203 SQNIQKLGPAKGSLKRNVNIGINRSNNKADSATLK-PRQRRKPDSISSAAYKKWEKAAIA 261
QN++KLGP + S K ++ +N + K D+A + RQRRK Y+KWEKAAI
Sbjct: 207 GQNVKKLGPGRASTKHGESLSVNLGDEKEDTAFGRGGRQRRK------QGYRKWEKAAID 260
Query: 262 GVSLVADAAEHLERTSTDKEVERQQEHTALETADKVLP-PLPTISPTLFAEGNVQTPVKL 320
GVSLVADAAEHLERTS DK+++ Q + P L + ++ N+Q KL
Sbjct: 261 GVSLVADAAEHLERTSIDKDMDDQTDLGPTRYLTGKSPLSLCSAGDVPLSDANMQFSAKL 320
Query: 321 KLQLYPIDDGTRKALEMDNHNPHLELTLSTRKKISSVLEHLNRKWGNASVASGELMLFPY 380
KLQL+PID+ TR++LEMD HNPHLELTLS RKKISSVLEHLNRKWG++S A+GEL+LFPY
Sbjct: 321 KLQLFPIDECTRRSLEMDKHNPHLELTLSNRKKISSVLEHLNRKWGSSSCATGELLLFPY 380
Query: 381 GAQRENLVGYQRWTQDSVFSAADVYAMIGSPPMFRLRYGWFSDTELGYVAPHAPSASGCV 440
A++E + +QRWT DS SAA+V++M+GSP +FRLRYGWF G + P++ C
Sbjct: 381 NARKETVTCHQRWTHDSFLSAAEVHSMVGSPSVFRLRYGWFVHDASGSIISQVPTSDPCP 440
Query: 441 PSFHNINVENKKE---QIVDSVPGRVPSTSDQSENFVDPYKKLTSVKENDTFATSSSSMP 497
++NV+ E + +S P V ST++Q+ TSV+ + +S
Sbjct: 441 SLEDDMNVDRLNEVNMLLTESGPLSVHSTAEQT----------TSVEPSQGLVCASGVHD 490
Query: 498 KETSSYISASKRDIADTSDPAANVSWPRKETGNEIITGQVEDMGDERLSSGTALSAGEWA 557
+ S D +PA+ P E LS G A S GEWA
Sbjct: 491 RPARSR---------DDYEPASTSITPL-----------------EHLSGGNAQSPGEWA 524
Query: 558 DSLTNISVGDLLAEVPHDLDA----APVAESSQ-CLQQIPFSCDSFDAAIAAHISRHQNK 612
DSLTNIS+GDLL+EVP D+D+ P E S L+ +PF+ DSFDAAIAAHI RHQNK
Sbjct: 525 DSLTNISIGDLLSEVPDDIDSDGVDPPATEGSHYLLRDVPFTSDSFDAAIAAHILRHQNK 584
Query: 613 MGALSTLASHASSIWDAEETCDAFSFQKNPVLCNEVSRLPDIAPPAADCEQIARTN---S 669
A L S +SS+WD EET DAFSFQKN + L +A P + R N S
Sbjct: 585 PSAQLPLTSGSSSLWDDEETRDAFSFQKNRFA--NSTELASVASPKG----VGRVNGEPS 638
Query: 670 ELLDAEGPTD--YPAHE--DPMDDCLRNPHTLDNSVNDFNGLTDIYWPDSLGPLDLDIPS 725
+L++A + Y H+ DPM++ +PHT+D+ GL D+YWPDSLGPLDLDI S
Sbjct: 639 QLVEASSGDEGSYNPHDDGDPMEEGPADPHTMDSPGKTPCGLADVYWPDSLGPLDLDIRS 698
Query: 726 SKYRGEDIILSDSLGGLNRLIASSLDAFQNCSFFGLDKKE 765
SKY +D+ILS+SLGGL+RLIA+SLDAFQNCS FG D K+
Sbjct: 699 SKYT-DDLILSESLGGLSRLIATSLDAFQNCSLFGFDNKK 737
>sp|Q96RY5|CRML_HUMAN Protein cramped-like OS=Homo sapiens GN=CRAMP1L PE=1 SV=3
Length = 1269
Score = 57.4 bits (137), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 42/75 (56%), Gaps = 12/75 (16%)
Query: 41 QQSAKRPTRQWAAWTREEEESFFTALRQVGKNFEKITHRV------------RSKNKDQV 88
++ K+ RQW +W+ E++ +FF L + GK+FE I + + KNK+QV
Sbjct: 153 KEEGKKVRRQWESWSTEDKNTFFEGLYEHGKDFEAIQNNIALKYKKKGKPASMVKNKEQV 212
Query: 89 RHYYYRLVRRMNKLL 103
RH+YYR ++ K +
Sbjct: 213 RHFYYRTWHKITKYI 227
Score = 36.2 bits (82), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 31/52 (59%)
Query: 314 VQTPVKLKLQLYPIDDGTRKALEMDNHNPHLELTLSTRKKISSVLEHLNRKW 365
V+ P+K+ ++L P ++ ++ NP L + + +K+SS++E L +KW
Sbjct: 315 VRLPLKVPIELQPRNNHAWARVQSLAQNPRLRMIVELHRKVSSLIEFLKQKW 366
>sp|Q6PG95|CRML_MOUSE Protein cramped-like OS=Mus musculus GN=Cramp1l PE=2 SV=3
Length = 1285
Score = 57.0 bits (136), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 42/75 (56%), Gaps = 12/75 (16%)
Query: 41 QQSAKRPTRQWAAWTREEEESFFTALRQVGKNFEKITHRV------------RSKNKDQV 88
++ K+ RQW +W+ E++ +FF L + GK+FE I + + KNK+QV
Sbjct: 150 KEEGKKVRRQWESWSTEDKNTFFEGLYEHGKDFEAIQNNIALKYKKKGKPASMVKNKEQV 209
Query: 89 RHYYYRLVRRMNKLL 103
RH+YYR ++ K +
Sbjct: 210 RHFYYRTWHKITKYI 224
Score = 35.8 bits (81), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 31/52 (59%)
Query: 314 VQTPVKLKLQLYPIDDGTRKALEMDNHNPHLELTLSTRKKISSVLEHLNRKW 365
V+ P+K+ ++L P ++ ++ NP L + + +K+SS++E L +KW
Sbjct: 312 VRLPLKVPVELQPRNNHAWARVQSLAQNPRLRMIVELHRKVSSLIEFLKQKW 363
>sp|Q8MX88|CRM_DROSE Protein cramped OS=Drosophila sechellia GN=crm PE=3 SV=1
Length = 975
Score = 41.2 bits (95), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 13/63 (20%)
Query: 54 WTREEEESFFTALRQVGKNFEKITHRVRS-------------KNKDQVRHYYYRLVRRMN 100
WT E FF AL + GK+FE + + + + K KDQVR +YY+ ++
Sbjct: 114 WTNVERNCFFDALNEFGKDFEAVANCINAKLKRRNANSDYSFKTKDQVRQHYYQTYHKIC 173
Query: 101 KLL 103
K +
Sbjct: 174 KYV 176
>sp|P92973|CCA1_ARATH Protein CCA1 OS=Arabidopsis thaliana GN=CCA1 PE=1 SV=1
Length = 608
Score = 40.8 bits (94), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 34/70 (48%)
Query: 32 SSTLDNVILQQSAKRPTRQWAAWTREEEESFFTALRQVGKNFEKITHRVRSKNKDQVRHY 91
SS D VI + T+Q WT EE F ALR G+ ++KI V +K Q+R +
Sbjct: 5 SSGEDLVIKTRKPYTITKQRERWTEEEHNRFIEALRLYGRAWQKIEEHVATKTAVQIRSH 64
Query: 92 YYRLVRRMNK 101
+ ++ K
Sbjct: 65 AQKFFSKVEK 74
>sp|O76906|CRM_DROME Protein cramped OS=Drosophila melanogaster GN=crm PE=1 SV=2
Length = 982
Score = 40.8 bits (94), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 13/63 (20%)
Query: 54 WTREEEESFFTALRQVGKNFEKITHRVRS-------------KNKDQVRHYYYRLVRRMN 100
WT E FF AL + GK+FE + + + + K KDQVR +YY+ ++
Sbjct: 114 WTNVERNCFFDALNEFGKDFEAVANCINAKLKRRNANSDYSFKTKDQVRQHYYQTHHKIC 173
Query: 101 KLL 103
K +
Sbjct: 174 KYV 176
>sp|Q6R0H1|LHY_ARATH Protein LHY OS=Arabidopsis thaliana GN=LHY PE=1 SV=2
Length = 645
Score = 39.7 bits (91), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 33/61 (54%), Gaps = 3/61 (4%)
Query: 44 AKRP---TRQWAAWTREEEESFFTALRQVGKNFEKITHRVRSKNKDQVRHYYYRLVRRMN 100
A++P T+Q WT +E E F ALR G+ +++I + +K Q+R + + ++
Sbjct: 14 ARKPYTITKQRERWTEDEHERFLEALRLYGRAWQRIEEHIGTKTAVQIRSHAQKFFTKLE 73
Query: 101 K 101
K
Sbjct: 74 K 74
>sp|Q9Y618|NCOR2_HUMAN Nuclear receptor corepressor 2 OS=Homo sapiens GN=NCOR2 PE=1 SV=2
Length = 2525
Score = 36.2 bits (82), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 25/47 (53%)
Query: 54 WTREEEESFFTALRQVGKNFEKITHRVRSKNKDQVRHYYYRLVRRMN 100
WT EE E+ L + G+N+ I V SK Q +++Y+ +R N
Sbjct: 615 WTEEEMETAKKGLLEHGRNWSAIARMVGSKTVSQCKNFYFNYKKRQN 661
>sp|Q9WU42|NCOR2_MOUSE Nuclear receptor corepressor 2 OS=Mus musculus GN=Ncor2 PE=1 SV=3
Length = 2472
Score = 36.2 bits (82), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 25/47 (53%)
Query: 54 WTREEEESFFTALRQVGKNFEKITHRVRSKNKDQVRHYYYRLVRRMN 100
WT EE E+ L + G+N+ I V SK Q +++Y+ +R N
Sbjct: 611 WTEEEMETAKKGLLEHGRNWSAIARMVGSKTVSQCKNFYFNYKKRQN 657
>sp|Q9P2K3|RCOR3_HUMAN REST corepressor 3 OS=Homo sapiens GN=RCOR3 PE=1 SV=2
Length = 495
Score = 36.2 bits (82), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 27/49 (55%)
Query: 52 AAWTREEEESFFTALRQVGKNFEKITHRVRSKNKDQVRHYYYRLVRRMN 100
A WT EE+ +R+ GK+F+ I + +K QV++++ RR N
Sbjct: 288 ARWTTEEQLLAVQGVRKYGKDFQAIADVIGNKTVGQVKNFFVNYRRRFN 336
>sp|Q8CFE3|RCOR1_MOUSE REST corepressor 1 OS=Mus musculus GN=Rcor1 PE=1 SV=2
Length = 477
Score = 35.8 bits (81), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 30/49 (61%)
Query: 52 AAWTREEEESFFTALRQVGKNFEKITHRVRSKNKDQVRHYYYRLVRRMN 100
A WT EE+ A+R+ G++F+ I+ + +K+ QV++++ RR N
Sbjct: 375 ARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRRFN 423
>sp|Q59E36|RCOR_DROME REST corepressor OS=Drosophila melanogaster GN=CoRest PE=1 SV=1
Length = 657
Score = 35.8 bits (81), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 26/52 (50%)
Query: 49 RQWAAWTREEEESFFTALRQVGKNFEKITHRVRSKNKDQVRHYYYRLVRRMN 100
R A W +E + A+R+ GKNF I V +K + VR +Y RR N
Sbjct: 369 RISARWLPDEIQVALLAIREYGKNFPTIAKVVATKTEAHVRTFYLNNRRRYN 420
>sp|Q6NRZ0|RCOR2_XENLA REST corepressor 2 OS=Xenopus laevis GN=rcor2 PE=2 SV=1
Length = 503
Score = 35.8 bits (81), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 28/49 (57%)
Query: 52 AAWTREEEESFFTALRQVGKNFEKITHRVRSKNKDQVRHYYYRLVRRMN 100
A WT +E+ A+R+ GK+F+ I+ + +K QV+ ++ RR N
Sbjct: 330 ARWTTDEQLLAVQAVRKYGKDFQAISEVLGNKTPSQVKTFFISYRRRFN 378
>sp|Q80TZ9|RERE_MOUSE Arginine-glutamic acid dipeptide repeats protein OS=Mus musculus
GN=Rere PE=1 SV=3
Length = 1558
Score = 35.8 bits (81), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 3/57 (5%)
Query: 40 LQQSAKRPTRQW--AAWTREEEESFFTALRQVGKNFEKITHR-VRSKNKDQVRHYYY 93
LQ+ K+P + WT +E + F LRQ GKNF +I + SK ++ +YY
Sbjct: 380 LQRLVKKPVPKLIEKCWTEDEVKRFVKGLRQYGKNFFRIRKELLPSKETGELITFYY 436
>sp|Q9UKL0|RCOR1_HUMAN REST corepressor 1 OS=Homo sapiens GN=RCOR1 PE=1 SV=1
Length = 482
Score = 35.8 bits (81), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 30/49 (61%)
Query: 52 AAWTREEEESFFTALRQVGKNFEKITHRVRSKNKDQVRHYYYRLVRRMN 100
A WT EE+ A+R+ G++F+ I+ + +K+ QV++++ RR N
Sbjct: 381 ARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRRFN 429
>sp|Q62901|RERE_RAT Arginine-glutamic acid dipeptide repeats protein OS=Rattus
norvegicus GN=Rere PE=2 SV=2
Length = 1559
Score = 35.4 bits (80), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 4/58 (6%)
Query: 40 LQQSAKRPTRQW--AAWTREEEESFFTALRQVGKNFEKITHRV--RSKNKDQVRHYYY 93
LQ+ K+P + WT +E + F LRQ GKNF +I + + + + YYY
Sbjct: 379 LQRLVKKPVPKLIEKCWTEDEVKRFVKGLRQYGKNFFRIRKELLPNKETGELITFYYY 436
>sp|Q9P2R6|RERE_HUMAN Arginine-glutamic acid dipeptide repeats protein OS=Homo sapiens
GN=RERE PE=1 SV=2
Length = 1566
Score = 35.0 bits (79), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 4/58 (6%)
Query: 40 LQQSAKRPTRQW--AAWTREEEESFFTALRQVGKNFEKITHRV--RSKNKDQVRHYYY 93
LQ+ K+P + WT +E + F LRQ GKNF +I + + + + YYY
Sbjct: 380 LQRLVKKPVPKLIEKCWTEDEVKRFVKGLRQYGKNFFRIRKELLPNKETGELITFYYY 437
>sp|Q55DP9|MYBP_DICDI Myb-like protein P OS=Dictyostelium discoideum GN=mybP PE=3 SV=1
Length = 1448
Score = 34.7 bits (78), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 23/45 (51%)
Query: 54 WTREEEESFFTALRQVGKNFEKITHRVRSKNKDQVRHYYYRLVRR 98
WT E E F A+++ G F I V+SK Q R +YY R+
Sbjct: 1365 WTEHERELFNIAVQKHGTQFNLIADYVQSKTGAQCRSFYYNSKRK 1409
>sp|Q90WN5|RCOR1_XENLA REST corepressor 1 OS=Xenopus laevis GN=rcor1 PE=2 SV=1
Length = 431
Score = 34.7 bits (78), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 29/49 (59%)
Query: 52 AAWTREEEESFFTALRQVGKNFEKITHRVRSKNKDQVRHYYYRLVRRMN 100
A WT EE+ A+R G++F+ I+ + +K+ QV++++ RR N
Sbjct: 330 ARWTTEEQLLAVQAIRMYGRDFQAISDVIGNKSVVQVKNFFVNYRRRFN 378
>sp|Q60974|NCOR1_MOUSE Nuclear receptor corepressor 1 OS=Mus musculus GN=Ncor1 PE=1 SV=1
Length = 2453
Score = 34.7 bits (78), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 26/47 (55%)
Query: 54 WTREEEESFFTALRQVGKNFEKITHRVRSKNKDQVRHYYYRLVRRMN 100
WT EE E L + G+N+ I V +K++ Q +++Y+ RR N
Sbjct: 627 WTEEEMEVAKKGLVEHGRNWAAIAKMVGTKSEAQCKNFYFNYKRRHN 673
>sp|Q54Z40|MYBH_DICDI Myb-like protein H OS=Dictyostelium discoideum GN=mybH PE=3 SV=1
Length = 1217
Score = 34.7 bits (78), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 28/50 (56%)
Query: 52 AAWTREEEESFFTALRQVGKNFEKITHRVRSKNKDQVRHYYYRLVRRMNK 101
++WT+EEE F A + K+ +KI V++K QVR + + ++ K
Sbjct: 151 SSWTKEEERLFVEAYKLYDKDNKKIQEHVKTKTILQVRSHAQKFALKLEK 200
>sp|O75376|NCOR1_HUMAN Nuclear receptor corepressor 1 OS=Homo sapiens GN=NCOR1 PE=1 SV=2
Length = 2440
Score = 34.3 bits (77), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 26/47 (55%)
Query: 54 WTREEEESFFTALRQVGKNFEKITHRVRSKNKDQVRHYYYRLVRRMN 100
WT EE E L + G+N+ I V +K++ Q +++Y+ RR N
Sbjct: 628 WTEEEMEVAKKGLVEHGRNWAAIAKMVGTKSEAQCKNFYFNYKRRHN 674
>sp|B1ZN03|DPO4_OPITP DNA polymerase IV OS=Opitutus terrae (strain DSM 11246 / PB90-1)
GN=dinB PE=3 SV=1
Length = 392
Score = 33.9 bits (76), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 6/75 (8%)
Query: 299 PPLPTISPTLFAEGNVQTPVKLKLQLYPIDDGTRKALEMDNHNPHLELTLSTRKKISSVL 358
P P ++P L + P++L + + T LEM N R+++++VL
Sbjct: 314 PFYPLVTPLLRQAWTKKRPLRLVSVRFSGVEDTPVQLEMFAQNEE------KRRRLAAVL 367
Query: 359 EHLNRKWGNASVASG 373
+HLNR+ G+A V G
Sbjct: 368 DHLNRRGGDAVVQHG 382
>sp|Q5VVJ2|MYSM1_HUMAN Histone H2A deubiquitinase MYSM1 OS=Homo sapiens GN=MYSM1 PE=1 SV=1
Length = 828
Score = 33.9 bits (76), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 22/92 (23%), Positives = 43/92 (46%), Gaps = 6/92 (6%)
Query: 6 QLSMNSEVHLHPRNTP------VQDEDPRVVASSTLDNVILQQSAKRPTRQWAAWTREEE 59
++ + E +L ++ P +++D + + S I+ S +P WT EE+
Sbjct: 67 KMLLEEEYYLSKKSQPEKVWLDQKEDDKKYMKSLQKTAKIMVHSPTKPASYSVKWTIEEK 126
Query: 60 ESFFTALRQVGKNFEKITHRVRSKNKDQVRHY 91
E F L + G+ + KI+ + S+ QV+ Y
Sbjct: 127 ELFEQGLAKFGRRWTKISKLIGSRTVLQVKSY 158
>sp|Q0V1H5|EIF3C_PHANO Eukaryotic translation initiation factor 3 subunit C
OS=Phaeosphaeria nodorum (strain SN15 / ATCC MYA-4574 /
FGSC 10173) GN=NIP1 PE=3 SV=1
Length = 853
Score = 33.1 bits (74), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 35/139 (25%), Positives = 64/139 (46%), Gaps = 13/139 (9%)
Query: 531 EIITGQVEDMGDERLSSGTALSAGEW---ADSLTNISVGDLLA--EVPHDLDAAPVAES- 584
+I TG E+ D + + ALSAGEW A+ + +I + +L+A E ++ +A + E
Sbjct: 652 QIFTGPPENTRDHVMQASKALSAGEWKKAAEFINSIKIWELVADSEKIKEMLSAQIQEEG 711
Query: 585 --SQCLQQIPFSCDSFDAAIAAHISRHQNKMGA-LSTLASHASSIWDAEETCDAFSFQKN 641
+ P+ + +A+ + K+ A +S + SH ++ A F+K
Sbjct: 712 LRTYLFTYAPYYDTLAVSTLASMFELSERKVSAVVSKMISHEELAAALDQVNSAIIFRKG 771
Query: 642 PVLCNEVSRLPDIAPPAAD 660
E+SRL +A +D
Sbjct: 772 V----ELSRLQTLALSLSD 786
>sp|Q5RGA4|MYSM1_DANRE Histone H2A deubiquitinase MYSM1 OS=Danio rerio GN=mysm1 PE=2 SV=2
Length = 822
Score = 33.1 bits (74), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 26/107 (24%), Positives = 42/107 (39%), Gaps = 18/107 (16%)
Query: 3 MESQLSMNSEVHLHPRNTPVQDEDPRVVASSTLDNVILQQSAKRPTRQWA---------- 52
++S NS V ++ + DE+ +V+ S L+ S K P W
Sbjct: 33 LQSAWRTNSSVLPWTLDSSISDENRQVIESMLLEEQYYFASKKAPKVAWTNEKTKVKKPL 92
Query: 53 --------AWTREEEESFFTALRQVGKNFEKITHRVRSKNKDQVRHY 91
W EE+E F L Q G+ + KI + ++ QV+ Y
Sbjct: 93 VKSSAAQTRWAEEEKELFEKGLAQFGRRWTKIAKLIGTRTVLQVKSY 139
>sp|Q6A078|CE290_MOUSE Centrosomal protein of 290 kDa OS=Mus musculus GN=Cep290 PE=1 SV=2
Length = 2472
Score = 33.1 bits (74), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 55/123 (44%), Gaps = 7/123 (5%)
Query: 461 GRVPSTSDQSENFVDPYKKLTSVKENDTFATSSSSMPKETSSYISASKRDIADTSDPAAN 520
R P+T+ N VD K ++KE A S + + + +A +R IA TS AN
Sbjct: 1710 SRAPTTT--MRNLVDRLKSQLALKEKQQKALSRALLELRSEMTAAAEERIIAVTSQKEAN 1767
Query: 521 VSWPR-KETGNEIITGQVEDMGDERLSSGTALSAGEWADSLTNISVGDLLAEVPHDLDAA 579
++ + E + Q+ED+ + L AL + ++ S+ D L E+ ++L
Sbjct: 1768 LNVQQVVERHTRELKSQIEDLNENLLKLKEALKTSKNKEN----SLADDLNELNNELQKK 1823
Query: 580 PVA 582
A
Sbjct: 1824 QKA 1826
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.313 0.129 0.377
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 289,552,434
Number of Sequences: 539616
Number of extensions: 12160888
Number of successful extensions: 25608
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 43
Number of HSP's that attempted gapping in prelim test: 25512
Number of HSP's gapped (non-prelim): 123
length of query: 787
length of database: 191,569,459
effective HSP length: 126
effective length of query: 661
effective length of database: 123,577,843
effective search space: 81684954223
effective search space used: 81684954223
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 65 (29.6 bits)