BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 003907
         (787 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3VU4|A Chain A, Crystal Structure Of Kluyvelomyces Marxianus Hsv2
 pdb|3VU4|B Chain B, Crystal Structure Of Kluyvelomyces Marxianus Hsv2
          Length = 355

 Score = 37.0 bits (84), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 25/94 (26%), Positives = 40/94 (42%), Gaps = 17/94 (18%)

Query: 365 FKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYK 424
            KAHT+PI  +  +    ++ T S  G  I +F+                     V + +
Sbjct: 191 IKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFK-----------------TEDGVLVRE 233

Query: 425 LHRGITSATIQDICFSHYSQWIAIVSSKGTCHVF 458
             RG+  A + D+ +S     +A+VS K T HVF
Sbjct: 234 FRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVF 267


>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
 pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
 pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
 pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
          Length = 321

 Score = 36.2 bits (82), Expect = 0.074,   Method: Compositional matrix adjust.
 Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 1/63 (1%)

Query: 349 GIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGS 408
           GI+ + D  T  ++   + H  PI +L F P   LLVTAS  G  I I+ +  + +    
Sbjct: 186 GIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDG-YIKIYDVQHANLAGTL 244

Query: 409 GNH 411
             H
Sbjct: 245 SGH 247


>pdb|1YEY|A Chain A, Crystal Structure Of L-Fuconate Dehydratase From
           Xanthomonas Campestris Pv. Campestris Str. Atcc 33913
 pdb|1YEY|B Chain B, Crystal Structure Of L-Fuconate Dehydratase From
           Xanthomonas Campestris Pv. Campestris Str. Atcc 33913
 pdb|1YEY|C Chain C, Crystal Structure Of L-Fuconate Dehydratase From
           Xanthomonas Campestris Pv. Campestris Str. Atcc 33913
 pdb|1YEY|D Chain D, Crystal Structure Of L-Fuconate Dehydratase From
           Xanthomonas Campestris Pv. Campestris Str. Atcc 33913
          Length = 444

 Score = 36.2 bits (82), Expect = 0.080,   Method: Compositional matrix adjust.
 Identities = 18/52 (34%), Positives = 24/52 (46%)

Query: 214 YCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLL 265
           Y  DALT +   ++L    PQ A + A  I  GY      P WL Y+   L+
Sbjct: 155 YLSDALTRDEALAILRDAQPQRAARTATLIEQGYPAYTTSPGWLGYSDEKLV 206


>pdb|2HXT|A Chain A, Crystal Structure Of L-Fuconate Dehydratase From
           Xanthomonas Campestris Liganded With Mg++ And
           D-Erythronohydroxamate
          Length = 441

 Score = 35.8 bits (81), Expect = 0.090,   Method: Compositional matrix adjust.
 Identities = 18/52 (34%), Positives = 24/52 (46%)

Query: 214 YCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLL 265
           Y  DALT +   ++L    PQ A + A  I  GY      P WL Y+   L+
Sbjct: 152 YLSDALTRDEALAILRDAQPQRAARTATLIEQGYPAYTTSPGWLGYSDEKLV 203


>pdb|4AV8|A Chain A, Kluyveromyces Lactis Hsv2 Complete Loop 6cd
 pdb|4AV9|A Chain A, Kluyveromyces Lactis Hsv2
 pdb|4EXV|A Chain A, Structure Of Kluyveromyces Lactis Hsv2p
          Length = 339

 Score = 35.8 bits (81), Expect = 0.094,   Method: Compositional matrix adjust.
 Identities = 24/93 (25%), Positives = 41/93 (44%), Gaps = 17/93 (18%)

Query: 366 KAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKL 425
           KAH +P+  +  +  G ++ T S  G  I +F+                   + V + + 
Sbjct: 176 KAHANPVKMVRLNRKGDMVATCSQDGTLIRVFQ-----------------TDNGVLVREF 218

Query: 426 HRGITSATIQDICFSHYSQWIAIVSSKGTCHVF 458
            RG+   +I D+ +S     +A+VS K T HVF
Sbjct: 219 RRGLDRTSIIDMRWSPDGSKLAVVSDKWTLHVF 251


>pdb|2HXU|A Chain A, Crystal Structure Of K220a Mutant Of L-Fuconate
           Dehydratase From Xanthomonas Campestris Liganded With
           Mg++ And L-Fuconate
          Length = 441

 Score = 35.8 bits (81), Expect = 0.094,   Method: Compositional matrix adjust.
 Identities = 18/52 (34%), Positives = 24/52 (46%)

Query: 214 YCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLL 265
           Y  DALT +   ++L    PQ A + A  I  GY      P WL Y+   L+
Sbjct: 152 YLSDALTRDEALAILRDAQPQRAARTATLIEQGYPAYTTSPGWLGYSDEKLV 203


>pdb|2HNE|A Chain A, Crystal Structure Of L-fuconate Dehydratase From
           Xanthomonas Campestris Pv. Campestris Str. Atcc 33913
 pdb|2HNE|B Chain B, Crystal Structure Of L-fuconate Dehydratase From
           Xanthomonas Campestris Pv. Campestris Str. Atcc 33913
 pdb|2HNE|C Chain C, Crystal Structure Of L-fuconate Dehydratase From
           Xanthomonas Campestris Pv. Campestris Str. Atcc 33913
 pdb|2HNE|D Chain D, Crystal Structure Of L-fuconate Dehydratase From
           Xanthomonas Campestris Pv. Campestris Str. Atcc 33913
          Length = 436

 Score = 35.8 bits (81), Expect = 0.097,   Method: Compositional matrix adjust.
 Identities = 18/52 (34%), Positives = 24/52 (46%)

Query: 214 YCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLL 265
           Y  DALT +   ++L    PQ A + A  I  GY      P WL Y+   L+
Sbjct: 152 YLSDALTRDEALAILRDAQPQRAARTATLIEQGYPAYTTSPGWLGYSDEKLV 203


>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
          Length = 315

 Score = 29.3 bits (64), Expect = 8.3,   Method: Compositional matrix adjust.
 Identities = 14/41 (34%), Positives = 24/41 (58%)

Query: 351 VVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYG 391
           V + D  T   +    AH+ P+SA+ F+  G+L+V++S  G
Sbjct: 134 VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 174


>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
          Length = 315

 Score = 29.3 bits (64), Expect = 8.5,   Method: Compositional matrix adjust.
 Identities = 14/41 (34%), Positives = 24/41 (58%)

Query: 351 VVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYG 391
           V + D  T   +    AH+ P+SA+ F+  G+L+V++S  G
Sbjct: 134 VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 174


>pdb|3C98|A Chain A, Revised Structure Of The Munc18a-Syntaxin1 Complex
          Length = 606

 Score = 29.3 bits (64), Expect = 8.5,   Method: Compositional matrix adjust.
 Identities = 35/127 (27%), Positives = 53/127 (41%), Gaps = 9/127 (7%)

Query: 618 PVQWWDVCRRSDWPEREEFISEATCDGHGAVEIFQNKSDCEDNYGIDFLDIND----CIV 673
           P+      RR   PER+E ISE T        I +   D  ++   D LD          
Sbjct: 461 PIVTDSTLRRRSKPERKERISEQTYQLSRWTPIIK---DIMEDTIEDKLDTKHYPYISTR 517

Query: 674 EKSTFKNCSVKSYERSHWYLSNAEVQMSSG-RLPIWQSSKISFFKMDSPRANTHASGEFE 732
             ++F   +V S    HW+ + A  +  SG RL I+    +S  +M      T A+G++E
Sbjct: 518 SSASFSTTAV-SARYGHWHKNKAPGEYRSGPRLIIFILGGVSLNEMRCAYEVTQANGKWE 576

Query: 733 IEKVSVH 739
           +   S H
Sbjct: 577 VLIGSTH 583


>pdb|2H9L|A Chain A, Wdr5delta23
 pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
          Length = 329

 Score = 29.3 bits (64), Expect = 8.5,   Method: Compositional matrix adjust.
 Identities = 14/41 (34%), Positives = 24/41 (58%)

Query: 351 VVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYG 391
           V + D  T   +    AH+ P+SA+ F+  G+L+V++S  G
Sbjct: 148 VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 188


>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
          Length = 315

 Score = 29.3 bits (64), Expect = 8.6,   Method: Compositional matrix adjust.
 Identities = 14/41 (34%), Positives = 24/41 (58%)

Query: 351 VVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYG 391
           V + D  T   +    AH+ P+SA+ F+  G+L+V++S  G
Sbjct: 134 VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 174


>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
           Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
          Length = 311

 Score = 29.3 bits (64), Expect = 8.7,   Method: Compositional matrix adjust.
 Identities = 14/41 (34%), Positives = 24/41 (58%)

Query: 351 VVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYG 391
           V + D  T   +    AH+ P+SA+ F+  G+L+V++S  G
Sbjct: 130 VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 170


>pdb|2GNQ|A Chain A, Structure Of Wdr5
          Length = 336

 Score = 29.3 bits (64), Expect = 8.8,   Method: Compositional matrix adjust.
 Identities = 14/41 (34%), Positives = 24/41 (58%)

Query: 351 VVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYG 391
           V + D  T   +    AH+ P+SA+ F+  G+L+V++S  G
Sbjct: 155 VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 195


>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
          Length = 318

 Score = 29.3 bits (64), Expect = 8.9,   Method: Compositional matrix adjust.
 Identities = 14/41 (34%), Positives = 24/41 (58%)

Query: 351 VVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYG 391
           V + D  T   +    AH+ P+SA+ F+  G+L+V++S  G
Sbjct: 137 VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 177


>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
           Activity By A Histone H3 Based Peptide Mimetic
 pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
           Activity By A Histone H3 Based Peptide Mimetic
 pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
           Wdr5-Interacting Motif Of Mll2
 pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
           Wdr5-Interacting Motif Of Mll3
 pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
           Wdr5-Interacting Motif Of Mll4
 pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
           Wdr5-Interacting Motif Of Set1a
 pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
           Wdr5-Interacting Motif Of Set1a
 pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
           Wdr5-Interacting Motif Of Set1b
          Length = 318

 Score = 29.3 bits (64), Expect = 9.0,   Method: Compositional matrix adjust.
 Identities = 14/41 (34%), Positives = 24/41 (58%)

Query: 351 VVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYG 391
           V + D  T   +    AH+ P+SA+ F+  G+L+V++S  G
Sbjct: 137 VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 177


>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
 pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
 pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
           Assembly And Regulation
          Length = 317

 Score = 29.3 bits (64), Expect = 9.0,   Method: Compositional matrix adjust.
 Identities = 14/41 (34%), Positives = 24/41 (58%)

Query: 351 VVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYG 391
           V + D  T   +    AH+ P+SA+ F+  G+L+V++S  G
Sbjct: 136 VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 176


>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
           Site
 pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
           Site
 pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
           Peptide
 pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
           Peptide
          Length = 334

 Score = 29.3 bits (64), Expect = 9.0,   Method: Compositional matrix adjust.
 Identities = 14/41 (34%), Positives = 24/41 (58%)

Query: 351 VVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYG 391
           V + D  T   +    AH+ P+SA+ F+  G+L+V++S  G
Sbjct: 153 VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 193


>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
           Compound
 pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
           Compound
 pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
           Compound
 pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
           Compound
 pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
           Compound
 pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
           Compound
 pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
           With 2-
           Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
           5- Nitrophenyl]benzamide
          Length = 312

 Score = 29.3 bits (64), Expect = 9.1,   Method: Compositional matrix adjust.
 Identities = 14/41 (34%), Positives = 24/41 (58%)

Query: 351 VVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYG 391
           V + D  T   +    AH+ P+SA+ F+  G+L+V++S  G
Sbjct: 131 VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 171


>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
           Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
 pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
           Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
          Length = 308

 Score = 29.3 bits (64), Expect = 9.2,   Method: Compositional matrix adjust.
 Identities = 14/41 (34%), Positives = 24/41 (58%)

Query: 351 VVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYG 391
           V + D  T   +    AH+ P+SA+ F+  G+L+V++S  G
Sbjct: 127 VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 167


>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
 pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
 pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
 pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
 pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
 pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
          Length = 313

 Score = 29.3 bits (64), Expect = 9.2,   Method: Compositional matrix adjust.
 Identities = 14/41 (34%), Positives = 24/41 (58%)

Query: 351 VVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYG 391
           V + D  T   +    AH+ P+SA+ F+  G+L+V++S  G
Sbjct: 132 VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 172


>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
           Histone Mark That Supports Euchromatin Maintenance
          Length = 318

 Score = 29.3 bits (64), Expect = 9.3,   Method: Compositional matrix adjust.
 Identities = 14/41 (34%), Positives = 24/41 (58%)

Query: 351 VVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYG 391
           V + D  T   +    AH+ P+SA+ F+  G+L+V++S  G
Sbjct: 137 VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 177


>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
           Of The Mll1 Complex
 pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
           Of The Mll1 Complex
 pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
           Of The Mll1 Complex
 pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
           Of The Mll1 Complex
 pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
           Of The Mll1 Complex
 pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
           Of The Mll1 Complex
 pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
           Of The Mll1 Complex
 pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
           Of The Mll1 Complex
 pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
 pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
           Complex
 pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
           Complex
 pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
           Complex
 pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
           Complex
 pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
           Complex
 pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
           Complex
 pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
           Complex
 pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
           Complex
 pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
           Complex
 pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
           Complex
 pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
           Complex
          Length = 312

 Score = 29.3 bits (64), Expect = 9.6,   Method: Compositional matrix adjust.
 Identities = 14/41 (34%), Positives = 24/41 (58%)

Query: 351 VVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYG 391
           V + D  T   +    AH+ P+SA+ F+  G+L+V++S  G
Sbjct: 131 VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 171


>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
          Length = 315

 Score = 29.3 bits (64), Expect = 9.8,   Method: Compositional matrix adjust.
 Identities = 14/41 (34%), Positives = 24/41 (58%)

Query: 351 VVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYG 391
           V + D  T   +    AH+ P+SA+ F+  G+L+V++S  G
Sbjct: 134 VRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 174


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.319    0.134    0.416 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,132,172
Number of Sequences: 62578
Number of extensions: 886675
Number of successful extensions: 1738
Number of sequences better than 100.0: 26
Number of HSP's better than 100.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1693
Number of HSP's gapped (non-prelim): 47
length of query: 787
length of database: 14,973,337
effective HSP length: 107
effective length of query: 680
effective length of database: 8,277,491
effective search space: 5628693880
effective search space used: 5628693880
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)