Query 003907
Match_columns 787
No_of_seqs 484 out of 2308
Neff 6.3
Searched_HMMs 46136
Date Thu Mar 28 14:08:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003907.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003907hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2109 WD40 repeat protein [G 100.0 1.2E-58 2.6E-63 514.0 17.1 630 12-761 1-650 (788)
2 PF12490 BCAS3: Breast carcino 100.0 5.8E-54 1.3E-58 450.8 16.1 238 505-750 1-251 (251)
3 KOG2110 Uncharacterized conser 100.0 9.3E-49 2E-53 413.1 32.8 325 53-596 2-341 (391)
4 KOG2111 Uncharacterized conser 100.0 3.8E-38 8.2E-43 327.7 32.4 316 57-594 6-331 (346)
5 KOG0271 Notchless-like WD40 re 99.9 4.7E-23 1E-27 218.8 23.8 310 51-475 110-453 (480)
6 KOG0272 U4/U6 small nuclear ri 99.9 3.5E-23 7.5E-28 222.4 19.8 278 54-459 173-458 (459)
7 KOG0263 Transcription initiati 99.9 6E-23 1.3E-27 234.4 22.1 230 74-465 389-653 (707)
8 KOG0271 Notchless-like WD40 re 99.9 4.4E-22 9.6E-27 211.5 22.3 308 55-459 156-479 (480)
9 KOG0315 G-protein beta subunit 99.9 1.8E-20 3.9E-25 190.4 24.5 269 77-473 13-300 (311)
10 KOG0272 U4/U6 small nuclear ri 99.9 2.2E-20 4.9E-25 200.9 19.4 227 173-478 197-435 (459)
11 KOG0273 Beta-transducin family 99.8 4.6E-19 1E-23 192.8 28.1 280 56-461 235-523 (524)
12 cd00200 WD40 WD40 domain, foun 99.8 5.4E-18 1.2E-22 172.2 34.4 278 52-459 5-289 (289)
13 KOG0286 G-protein beta subunit 99.8 4E-18 8.6E-23 176.8 27.8 258 52-476 51-318 (343)
14 KOG0319 WD40-repeat-containing 99.8 3.4E-19 7.5E-24 202.0 21.2 369 51-475 142-549 (775)
15 KOG0279 G protein beta subunit 99.8 1.6E-17 3.5E-22 171.5 27.5 248 52-466 11-267 (315)
16 KOG0295 WD40 repeat-containing 99.8 3E-18 6.5E-23 181.9 21.9 254 52-459 146-404 (406)
17 KOG0291 WD40-repeat-containing 99.8 2.9E-17 6.3E-22 186.6 30.7 270 75-466 277-555 (893)
18 KOG0265 U5 snRNP-specific prot 99.8 7.5E-18 1.6E-22 175.3 22.4 268 46-478 38-313 (338)
19 PLN00181 protein SPA1-RELATED; 99.8 7E-17 1.5E-21 196.6 34.3 236 75-460 545-792 (793)
20 KOG0315 G-protein beta subunit 99.8 1.5E-17 3.3E-22 169.3 23.5 227 172-473 19-258 (311)
21 KOG0318 WD40 repeat stress pro 99.8 1.3E-16 2.9E-21 175.6 31.9 327 52-469 186-568 (603)
22 KOG0266 WD40 repeat-containing 99.8 9.9E-17 2.1E-21 183.6 31.6 249 56-472 159-420 (456)
23 KOG0273 Beta-transducin family 99.8 1.7E-17 3.7E-22 180.7 22.8 215 173-464 257-485 (524)
24 KOG0295 WD40 repeat-containing 99.8 9.5E-18 2E-22 178.1 19.3 251 53-473 105-376 (406)
25 PLN00181 protein SPA1-RELATED; 99.8 3.3E-16 7.2E-21 190.7 34.7 247 53-462 480-739 (793)
26 KOG0279 G protein beta subunit 99.8 1.5E-16 3.3E-21 164.3 25.9 226 74-462 74-314 (315)
27 KOG0285 Pleiotropic regulator 99.8 4.2E-17 9.1E-22 172.7 21.3 237 54-462 149-390 (460)
28 KOG0281 Beta-TrCP (transducin 99.8 3.5E-18 7.5E-23 180.0 13.1 237 46-463 188-430 (499)
29 KOG0291 WD40-repeat-containing 99.8 2.3E-16 4.9E-21 179.4 28.6 250 72-469 359-620 (893)
30 KOG0306 WD40-repeat-containing 99.8 5.7E-17 1.2E-21 184.2 22.2 225 75-462 424-665 (888)
31 KOG0266 WD40 repeat-containing 99.8 1.5E-16 3.4E-21 182.0 26.1 189 172-473 180-376 (456)
32 KOG0319 WD40-repeat-containing 99.7 6.7E-17 1.5E-21 183.6 21.8 263 52-475 319-591 (775)
33 KOG0292 Vesicle coat complex C 99.7 1.7E-16 3.6E-21 182.5 22.5 274 52-470 5-289 (1202)
34 KOG0263 Transcription initiati 99.7 1.5E-16 3.3E-21 182.3 21.5 184 175-474 433-620 (707)
35 KOG0285 Pleiotropic regulator 99.7 1.5E-16 3.3E-21 168.5 18.1 216 95-473 141-360 (460)
36 KOG0286 G-protein beta subunit 99.7 2.3E-15 5.1E-20 156.4 26.0 223 74-459 108-343 (343)
37 KOG1407 WD40 repeat protein [F 99.7 7.5E-16 1.6E-20 158.0 21.6 242 52-462 16-262 (313)
38 PTZ00421 coronin; Provisional 99.7 6.6E-15 1.4E-19 169.7 32.0 222 84-463 51-292 (493)
39 KOG0310 Conserved WD40 repeat- 99.7 1.3E-15 2.9E-20 166.9 24.4 236 52-460 64-308 (487)
40 KOG0278 Serine/threonine kinas 99.7 1.5E-16 3.2E-21 162.1 15.8 198 53-401 97-298 (334)
41 KOG0274 Cdc4 and related F-box 99.7 1.5E-15 3.2E-20 175.9 25.9 242 50-467 243-488 (537)
42 KOG0284 Polyadenylation factor 99.7 9.7E-17 2.1E-21 172.4 14.5 270 74-466 107-385 (464)
43 KOG0276 Vesicle coat complex C 99.7 3.6E-16 7.9E-21 174.7 18.9 220 173-468 35-264 (794)
44 KOG0288 WD40 repeat protein Ti 99.7 1.1E-15 2.3E-20 164.7 18.1 235 57-459 220-459 (459)
45 cd00200 WD40 WD40 domain, foun 99.7 2.5E-14 5.4E-19 145.3 27.4 175 173-463 31-209 (289)
46 KOG0274 Cdc4 and related F-box 99.7 4.3E-15 9.4E-20 172.0 24.2 228 77-471 220-451 (537)
47 KOG0296 Angio-associated migra 99.7 4.3E-14 9.3E-19 150.7 28.7 286 52-461 102-398 (399)
48 KOG0276 Vesicle coat complex C 99.7 5E-15 1.1E-19 165.7 22.4 221 75-457 67-295 (794)
49 KOG0282 mRNA splicing factor [ 99.7 6E-16 1.3E-20 169.4 14.8 264 51-478 209-479 (503)
50 PTZ00420 coronin; Provisional 99.7 5.2E-14 1.1E-18 163.8 31.5 218 86-462 56-294 (568)
51 KOG0305 Anaphase promoting com 99.7 8.1E-15 1.7E-19 165.4 23.8 237 56-463 217-463 (484)
52 KOG0643 Translation initiation 99.7 4E-14 8.6E-19 145.8 25.9 263 53-461 7-317 (327)
53 KOG0318 WD40 repeat stress pro 99.7 3.3E-14 7.2E-19 157.0 26.7 275 54-478 57-368 (603)
54 KOG0268 Sof1-like rRNA process 99.7 1.5E-15 3.3E-20 161.3 15.5 278 52-463 62-347 (433)
55 TIGR03866 PQQ_ABC_repeats PQQ- 99.7 3.1E-13 6.7E-18 142.2 32.9 267 76-465 2-283 (300)
56 PTZ00421 coronin; Provisional 99.6 1.4E-13 3E-18 158.8 32.1 249 52-462 71-332 (493)
57 KOG1446 Histone H3 (Lys4) meth 99.6 2.1E-13 4.6E-18 143.4 30.2 242 54-464 12-265 (311)
58 KOG0310 Conserved WD40 repeat- 99.6 9.8E-15 2.1E-19 160.2 20.1 245 52-465 22-272 (487)
59 KOG0316 Conserved WD40 repeat- 99.6 3.6E-14 7.7E-19 143.9 22.1 172 172-463 38-215 (307)
60 KOG0281 Beta-TrCP (transducin 99.6 2.1E-15 4.6E-20 159.2 13.7 240 52-462 233-478 (499)
61 PTZ00420 coronin; Provisional 99.6 3.1E-13 6.8E-18 157.4 32.4 130 52-232 70-210 (568)
62 KOG0265 U5 snRNP-specific prot 99.6 5E-14 1.1E-18 147.1 23.0 221 75-457 103-334 (338)
63 KOG0316 Conserved WD40 repeat- 99.6 5.6E-14 1.2E-18 142.5 21.1 247 52-470 13-266 (307)
64 KOG0645 WD40 repeat protein [G 99.6 3.8E-13 8.2E-18 139.0 27.6 261 52-461 10-311 (312)
65 KOG0973 Histone transcription 99.6 1.6E-13 3.5E-18 162.2 26.0 250 53-462 66-356 (942)
66 KOG0645 WD40 repeat protein [G 99.6 4.3E-13 9.4E-18 138.5 25.7 204 98-461 7-225 (312)
67 KOG0293 WD40 repeat-containing 99.6 4.8E-14 1E-18 151.9 19.2 282 52-463 220-515 (519)
68 KOG1036 Mitotic spindle checkp 99.6 1.5E-13 3.3E-18 144.0 21.2 242 54-451 52-294 (323)
69 KOG0292 Vesicle coat complex C 99.6 5.3E-14 1.1E-18 162.3 19.2 212 173-483 31-260 (1202)
70 KOG0772 Uncharacterized conser 99.6 1.9E-13 4.2E-18 150.6 21.6 111 342-468 284-401 (641)
71 KOG0264 Nucleosome remodeling 99.6 3.1E-13 6.6E-18 147.6 22.9 110 343-461 289-404 (422)
72 KOG0313 Microtubule binding pr 99.6 5.9E-13 1.3E-17 142.6 24.4 221 77-462 161-419 (423)
73 KOG0643 Translation initiation 99.6 4.5E-13 9.8E-18 138.1 22.6 186 173-471 32-230 (327)
74 KOG0277 Peroxisomal targeting 99.6 1.9E-13 4.1E-18 140.1 18.8 229 86-473 40-278 (311)
75 KOG0973 Histone transcription 99.5 8.5E-14 1.8E-18 164.6 18.1 248 342-592 28-362 (942)
76 KOG0313 Microtubule binding pr 99.5 8.6E-13 1.9E-17 141.4 22.6 114 344-475 276-391 (423)
77 KOG1539 WD repeat protein [Gen 99.5 3.6E-12 7.9E-17 147.1 29.2 121 344-466 465-611 (910)
78 KOG0288 WD40 repeat protein Ti 99.5 6.2E-14 1.3E-18 151.3 13.6 247 54-469 173-425 (459)
79 KOG0647 mRNA export protein (c 99.5 5.6E-13 1.2E-17 139.4 20.2 264 30-389 45-313 (347)
80 KOG0264 Nucleosome remodeling 99.5 3.1E-13 6.8E-18 147.5 19.1 106 344-468 245-354 (422)
81 KOG0308 Conserved WD40 repeat- 99.5 1.7E-13 3.7E-18 154.4 17.0 103 343-465 187-289 (735)
82 KOG0306 WD40-repeat-containing 99.5 1.5E-12 3.3E-17 148.7 24.4 301 56-475 320-636 (888)
83 KOG1539 WD repeat protein [Gen 99.5 3.5E-12 7.5E-17 147.3 27.0 95 344-459 551-646 (910)
84 KOG2055 WD40 repeat protein [G 99.5 9E-13 2E-17 144.0 20.7 281 55-463 212-514 (514)
85 KOG0289 mRNA splicing factor [ 99.5 1.4E-12 2.9E-17 141.7 21.5 225 76-460 232-461 (506)
86 KOG2096 WD40 repeat protein [G 99.5 1.7E-12 3.7E-17 136.4 21.3 262 52-459 82-400 (420)
87 KOG1407 WD40 repeat protein [F 99.5 4E-12 8.7E-17 130.9 23.5 229 66-461 69-311 (313)
88 KOG0283 WD40 repeat-containing 99.5 1.6E-12 3.5E-17 150.7 22.8 197 151-464 367-579 (712)
89 KOG1274 WD40 repeat protein [G 99.5 4.9E-12 1.1E-16 147.4 26.7 239 53-462 10-263 (933)
90 KOG0277 Peroxisomal targeting 99.5 1.9E-12 4.2E-17 132.7 18.8 249 52-459 45-307 (311)
91 KOG0305 Anaphase promoting com 99.5 3.7E-12 8E-17 144.1 22.8 238 74-474 187-432 (484)
92 KOG2445 Nuclear pore complex c 99.5 2.5E-11 5.4E-16 127.5 27.1 108 348-461 198-318 (361)
93 KOG0772 Uncharacterized conser 99.5 1.8E-12 3.8E-17 143.1 19.1 109 343-468 333-452 (641)
94 KOG0641 WD40 repeat protein [G 99.5 5E-11 1.1E-15 120.4 27.3 257 52-461 85-349 (350)
95 KOG0284 Polyadenylation factor 99.4 3.8E-13 8.3E-18 145.0 11.5 212 191-478 95-311 (464)
96 KOG0278 Serine/threonine kinas 99.4 6.8E-12 1.5E-16 128.4 18.5 283 53-463 11-299 (334)
97 KOG0269 WD40 repeat-containing 99.4 1.7E-12 3.6E-17 148.9 14.8 113 344-475 194-311 (839)
98 KOG1332 Vesicle coat complex C 99.4 5.2E-12 1.1E-16 129.1 16.7 263 52-464 7-289 (299)
99 KOG0267 Microtubule severing p 99.4 4.2E-13 9.1E-18 152.7 9.5 213 75-452 40-259 (825)
100 KOG0282 mRNA splicing factor [ 99.4 9.6E-13 2.1E-17 144.5 11.1 218 96-473 205-430 (503)
101 KOG4283 Transcription-coupled 99.4 4.7E-11 1E-15 124.7 22.8 132 172-401 123-277 (397)
102 KOG0640 mRNA cleavage stimulat 99.4 7.8E-12 1.7E-16 131.1 16.4 99 349-465 238-339 (430)
103 KOG1408 WD40 repeat protein [F 99.4 1.2E-11 2.6E-16 140.3 19.0 218 173-462 481-714 (1080)
104 KOG0283 WD40 repeat-containing 99.4 1.8E-11 3.9E-16 142.0 21.0 107 342-470 383-490 (712)
105 KOG2106 Uncharacterized conser 99.4 3E-10 6.5E-15 125.5 29.2 263 55-459 245-519 (626)
106 KOG2919 Guanine nucleotide-bin 99.4 4.8E-11 1E-15 126.0 21.4 103 349-468 230-334 (406)
107 KOG0300 WD40 repeat-containing 99.4 6.6E-11 1.4E-15 124.3 22.0 275 42-463 134-430 (481)
108 KOG4378 Nuclear protein COP1 [ 99.4 1.7E-11 3.6E-16 134.9 17.9 118 344-482 182-302 (673)
109 KOG1446 Histone H3 (Lys4) meth 99.4 1.7E-10 3.8E-15 121.7 24.8 183 347-585 78-262 (311)
110 TIGR03866 PQQ_ABC_repeats PQQ- 99.4 2.2E-10 4.7E-15 120.5 25.5 175 173-464 11-190 (300)
111 KOG0301 Phospholipase A2-activ 99.3 1.6E-10 3.5E-15 131.6 24.7 200 172-461 34-249 (745)
112 KOG0307 Vesicle coat complex C 99.3 4.3E-12 9.4E-17 150.9 12.6 246 63-463 66-329 (1049)
113 KOG0639 Transducin-like enhanc 99.3 2.6E-11 5.5E-16 133.5 17.4 261 75-460 431-703 (705)
114 KOG0269 WD40 repeat-containing 99.3 1.1E-11 2.3E-16 142.4 14.7 224 75-457 100-336 (839)
115 KOG0301 Phospholipase A2-activ 99.3 1.3E-10 2.8E-15 132.4 22.6 214 77-463 73-290 (745)
116 KOG0647 mRNA export protein (c 99.3 6E-10 1.3E-14 117.0 25.3 254 54-474 25-294 (347)
117 KOG0641 WD40 repeat protein [G 99.3 1.1E-09 2.3E-14 110.9 26.0 99 343-461 198-303 (350)
118 KOG0293 WD40 repeat-containing 99.3 5.2E-11 1.1E-15 128.8 16.9 241 51-400 264-513 (519)
119 KOG0289 mRNA splicing factor [ 99.3 4.9E-10 1.1E-14 122.1 24.1 241 52-460 257-505 (506)
120 KOG1273 WD40 repeat protein [G 99.3 1.4E-10 3.1E-15 122.1 19.2 248 59-461 26-280 (405)
121 KOG0275 Conserved WD40 repeat- 99.3 7E-12 1.5E-16 131.8 9.5 226 327-628 217-457 (508)
122 KOG0294 WD40 repeat-containing 99.3 5.9E-10 1.3E-14 117.6 23.7 211 172-463 62-283 (362)
123 KOG0275 Conserved WD40 repeat- 99.3 9.3E-11 2E-15 123.4 17.3 256 54-478 211-484 (508)
124 KOG0267 Microtubule severing p 99.3 4.5E-12 9.8E-17 144.4 8.0 175 173-463 50-228 (825)
125 KOG0300 WD40 repeat-containing 99.3 1.3E-10 2.7E-15 122.3 17.9 247 177-466 128-391 (481)
126 KOG0299 U3 snoRNP-associated p 99.3 1.9E-10 4.1E-15 126.2 19.4 218 73-452 212-446 (479)
127 KOG4283 Transcription-coupled 99.3 1.9E-10 4.1E-15 120.2 18.2 109 347-462 166-277 (397)
128 KOG0640 mRNA cleavage stimulat 99.3 1.3E-10 2.8E-15 122.1 17.0 258 55-460 111-425 (430)
129 KOG0268 Sof1-like rRNA process 99.3 2.6E-11 5.7E-16 129.5 11.8 214 172-463 88-304 (433)
130 KOG0270 WD40 repeat-containing 99.2 2.8E-10 6.2E-15 124.3 19.2 179 172-463 265-451 (463)
131 KOG0294 WD40 repeat-containing 99.2 7.2E-10 1.6E-14 117.0 21.0 222 74-401 52-282 (362)
132 KOG0302 Ribosome Assembly prot 99.2 2.3E-10 5E-15 122.9 17.3 104 342-463 273-380 (440)
133 KOG0299 U3 snoRNP-associated p 99.2 5.7E-10 1.2E-14 122.5 20.6 176 172-463 223-412 (479)
134 KOG1272 WD40-repeat-containing 99.2 1E-11 2.2E-16 135.9 7.1 207 173-460 151-361 (545)
135 KOG1036 Mitotic spindle checkp 99.2 2.4E-09 5.2E-14 112.9 23.1 248 53-467 10-268 (323)
136 KOG0296 Angio-associated migra 99.2 1.8E-09 4E-14 115.7 22.4 204 98-462 57-264 (399)
137 KOG1274 WD40 repeat protein [G 99.2 2.1E-09 4.6E-14 125.9 24.4 222 77-458 68-297 (933)
138 KOG2106 Uncharacterized conser 99.2 1.2E-08 2.6E-13 113.1 28.6 276 56-468 200-484 (626)
139 KOG0308 Conserved WD40 repeat- 99.2 5.4E-10 1.2E-14 126.6 18.4 228 75-463 85-329 (735)
140 KOG1063 RNA polymerase II elon 99.2 2.5E-09 5.4E-14 122.1 23.7 99 349-463 552-650 (764)
141 KOG2096 WD40 repeat protein [G 99.2 2.4E-10 5.2E-15 120.5 13.9 109 340-461 200-308 (420)
142 KOG4328 WD40 protein [Function 99.2 9.3E-10 2E-14 120.7 18.6 246 56-461 186-450 (498)
143 KOG0639 Transducin-like enhanc 99.2 3.9E-10 8.4E-15 124.4 14.3 227 186-466 413-667 (705)
144 PRK11028 6-phosphogluconolacto 99.1 5.2E-08 1.1E-12 106.5 31.0 105 346-466 194-309 (330)
145 KOG0650 WD40 repeat nucleolar 99.1 4E-09 8.7E-14 118.7 21.0 261 172-458 421-732 (733)
146 KOG2055 WD40 repeat protein [G 99.1 7.1E-09 1.5E-13 114.0 22.2 94 347-462 323-418 (514)
147 KOG2048 WD40 repeat protein [G 99.1 2.2E-08 4.8E-13 114.4 26.7 248 51-462 67-320 (691)
148 KOG0646 WD40 repeat protein [G 99.1 2.9E-09 6.4E-14 117.1 16.7 244 173-467 61-313 (476)
149 PRK01742 tolB translocation pr 99.1 4E-08 8.8E-13 111.9 26.9 78 373-473 336-415 (429)
150 KOG1034 Transcriptional repres 99.1 3.8E-09 8.1E-14 112.1 16.8 101 345-463 111-213 (385)
151 KOG0646 WD40 repeat protein [G 99.1 7.9E-09 1.7E-13 113.8 19.9 197 73-400 91-307 (476)
152 KOG4328 WD40 protein [Function 99.1 3.6E-09 7.8E-14 116.2 17.0 100 346-461 298-399 (498)
153 KOG1408 WD40 repeat protein [F 99.1 1.9E-08 4.1E-13 114.9 23.2 92 370-478 597-688 (1080)
154 COG2319 FOG: WD40 repeat [Gene 99.1 4.2E-07 9.1E-12 96.3 32.4 179 172-465 133-318 (466)
155 KOG1034 Transcriptional repres 99.0 1.4E-08 3E-13 107.9 19.2 100 77-222 107-214 (385)
156 KOG2048 WD40 repeat protein [G 99.0 4.4E-08 9.6E-13 111.9 23.1 189 173-475 47-247 (691)
157 KOG1332 Vesicle coat complex C 99.0 4.2E-09 9E-14 108.1 12.5 100 345-462 122-242 (299)
158 KOG1007 WD repeat protein TSSC 99.0 4.3E-08 9.3E-13 102.7 19.9 246 74-462 75-362 (370)
159 KOG0322 G-protein beta subunit 98.9 1.3E-08 2.8E-13 105.5 14.8 69 372-460 254-322 (323)
160 PRK03629 tolB translocation pr 98.9 4.9E-07 1.1E-11 103.2 28.6 212 86-460 181-405 (429)
161 PRK05137 tolB translocation pr 98.9 7.5E-07 1.6E-11 101.7 30.1 204 86-452 184-397 (435)
162 KOG1188 WD40 repeat protein [G 98.9 2.5E-08 5.4E-13 106.5 16.5 187 173-467 50-248 (376)
163 KOG0644 Uncharacterized conser 98.9 4E-09 8.6E-14 122.2 10.7 279 52-461 186-468 (1113)
164 KOG0321 WD40 repeat-containing 98.9 5.6E-08 1.2E-12 110.4 19.3 114 346-476 237-363 (720)
165 KOG1063 RNA polymerase II elon 98.9 2.8E-07 6.1E-12 105.7 24.5 290 75-461 25-391 (764)
166 KOG0302 Ribosome Assembly prot 98.9 7.8E-08 1.7E-12 103.8 18.6 110 343-459 318-436 (440)
167 KOG0290 Conserved WD40 repeat- 98.9 9.6E-08 2.1E-12 100.2 18.4 176 172-453 172-358 (364)
168 KOG4378 Nuclear protein COP1 [ 98.9 6.1E-08 1.3E-12 107.3 17.8 207 75-443 91-305 (673)
169 KOG0307 Vesicle coat complex C 98.9 5.6E-09 1.2E-13 124.9 10.0 101 344-462 179-285 (1049)
170 KOG2109 WD40 repeat protein [G 98.9 3.3E-09 7.2E-14 120.8 7.2 314 74-473 251-588 (788)
171 KOG2110 Uncharacterized conser 98.9 2.5E-06 5.4E-11 92.3 28.5 194 174-466 107-336 (391)
172 KOG0270 WD40 repeat-containing 98.8 9.3E-08 2E-12 105.0 17.6 130 52-233 239-375 (463)
173 KOG1445 Tumor-specific antigen 98.8 3.9E-08 8.4E-13 111.2 14.6 102 343-462 694-799 (1012)
174 KOG0303 Actin-binding protein 98.8 4.7E-08 1E-12 105.9 14.7 107 344-470 149-258 (472)
175 KOG1587 Cytoplasmic dynein int 98.8 2.9E-07 6.3E-12 107.1 22.3 276 85-462 223-517 (555)
176 COG2319 FOG: WD40 repeat [Gene 98.8 4.6E-06 1E-10 88.3 29.9 223 81-464 130-362 (466)
177 KOG1273 WD40 repeat protein [G 98.8 1.6E-08 3.4E-13 107.0 10.3 129 342-471 38-193 (405)
178 KOG1009 Chromatin assembly com 98.8 2.7E-08 5.8E-13 108.2 10.9 130 342-475 29-167 (434)
179 PRK02889 tolB translocation pr 98.7 4.8E-06 1E-10 95.0 28.1 71 373-464 331-404 (427)
180 KOG1188 WD40 repeat protein [G 98.7 3E-07 6.6E-12 98.4 16.1 105 74-223 39-155 (376)
181 PRK04922 tolB translocation pr 98.7 5.9E-06 1.3E-10 94.4 27.2 51 173-223 228-284 (433)
182 KOG0290 Conserved WD40 repeat- 98.7 5.5E-07 1.2E-11 94.7 16.8 104 344-465 214-322 (364)
183 KOG1963 WD40 repeat protein [G 98.7 1.8E-06 4E-11 101.5 22.7 102 342-464 220-325 (792)
184 PF08662 eIF2A: Eukaryotic tra 98.7 8.7E-07 1.9E-11 90.5 17.6 126 174-399 38-178 (194)
185 KOG1517 Guanine nucleotide bin 98.7 8.1E-07 1.8E-11 105.7 19.3 106 343-463 1273-1383(1387)
186 KOG1007 WD repeat protein TSSC 98.7 2E-06 4.3E-11 90.5 19.7 103 346-467 190-295 (370)
187 KOG1517 Guanine nucleotide bin 98.7 2.1E-06 4.6E-11 102.3 22.0 102 345-462 1227-1334(1387)
188 PF08662 eIF2A: Eukaryotic tra 98.7 2.6E-07 5.7E-12 94.4 12.9 94 344-461 78-179 (194)
189 PRK11028 6-phosphogluconolacto 98.6 4E-06 8.6E-11 91.7 22.8 102 348-463 101-207 (330)
190 KOG2111 Uncharacterized conser 98.6 2.9E-05 6.3E-10 82.9 27.8 117 344-463 198-324 (346)
191 KOG2445 Nuclear pore complex c 98.6 1.5E-06 3.3E-11 92.0 17.4 39 360-399 279-317 (361)
192 KOG1524 WD40 repeat-containing 98.6 9.6E-07 2.1E-11 98.8 16.4 202 75-455 75-280 (737)
193 KOG1445 Tumor-specific antigen 98.6 6.7E-08 1.4E-12 109.3 7.3 100 343-462 644-751 (1012)
194 KOG0303 Actin-binding protein 98.6 1.8E-06 4E-11 93.8 17.8 128 52-230 77-214 (472)
195 KOG1009 Chromatin assembly com 98.6 1.4E-05 3E-10 87.5 24.1 301 55-463 12-374 (434)
196 KOG0771 Prolactin regulatory e 98.6 9.6E-07 2.1E-11 96.8 15.0 74 370-462 282-355 (398)
197 PRK01742 tolB translocation pr 98.6 2E-06 4.4E-11 98.1 18.2 89 351-462 274-362 (429)
198 PF10282 Lactonase: Lactonase, 98.6 0.00016 3.4E-09 80.3 32.6 84 371-469 246-330 (345)
199 PRK00178 tolB translocation pr 98.5 8.3E-05 1.8E-09 84.6 29.6 51 173-223 223-279 (430)
200 KOG0321 WD40 repeat-containing 98.5 2.9E-06 6.3E-11 96.8 16.7 92 366-466 211-306 (720)
201 KOG1963 WD40 repeat protein [G 98.5 6.8E-06 1.5E-10 96.9 20.2 231 173-464 37-284 (792)
202 KOG3881 Uncharacterized conser 98.5 7.2E-06 1.6E-10 89.3 18.7 103 343-464 220-323 (412)
203 PRK05137 tolB translocation pr 98.5 2.3E-05 5E-10 89.5 24.1 92 349-461 270-366 (435)
204 TIGR02800 propeller_TolB tol-p 98.5 3.6E-05 7.7E-10 86.7 25.3 85 350-456 303-389 (417)
205 KOG0642 Cell-cycle nuclear pro 98.5 4.7E-07 1E-11 102.0 9.7 111 342-462 309-427 (577)
206 KOG0322 G-protein beta subunit 98.5 1.5E-06 3.3E-11 90.4 12.4 57 342-399 266-322 (323)
207 TIGR02658 TTQ_MADH_Hv methylam 98.4 0.00059 1.3E-08 75.9 33.0 98 347-464 213-333 (352)
208 KOG2394 WD40 protein DMR-N9 [G 98.4 2.2E-07 4.8E-12 104.0 5.7 103 361-483 282-384 (636)
209 PRK04922 tolB translocation pr 98.4 2E-05 4.3E-10 90.1 21.8 95 349-462 272-369 (433)
210 KOG0771 Prolactin regulatory e 98.4 9.3E-07 2E-11 96.9 9.9 122 342-465 159-315 (398)
211 PRK03629 tolB translocation pr 98.4 2.8E-05 6.1E-10 88.8 22.6 94 350-462 268-364 (429)
212 KOG2394 WD40 protein DMR-N9 [G 98.4 5.3E-06 1.1E-10 93.3 14.2 70 327-401 294-363 (636)
213 PRK02889 tolB translocation pr 98.3 3.9E-05 8.4E-10 87.6 21.4 93 351-462 266-361 (427)
214 PRK04792 tolB translocation pr 98.3 0.00031 6.7E-09 80.9 28.8 51 173-223 242-298 (448)
215 KOG2139 WD40 repeat protein [G 98.3 2.6E-05 5.7E-10 84.4 18.2 98 348-466 217-314 (445)
216 KOG0649 WD40 repeat protein [G 98.3 0.0002 4.3E-09 74.3 23.0 86 173-261 136-225 (325)
217 KOG0642 Cell-cycle nuclear pro 98.3 1E-05 2.3E-10 91.4 14.8 56 344-400 506-561 (577)
218 KOG0649 WD40 repeat protein [G 98.3 1.6E-05 3.4E-10 82.2 14.5 108 344-465 131-239 (325)
219 PF00400 WD40: WD domain, G-be 98.3 1.7E-06 3.7E-11 64.3 5.4 38 360-398 2-39 (39)
220 TIGR02800 propeller_TolB tol-p 98.2 0.00016 3.5E-09 81.4 22.8 93 349-462 258-355 (417)
221 COG2706 3-carboxymuconate cycl 98.2 0.0029 6.3E-08 69.0 30.8 85 369-469 243-329 (346)
222 PRK01029 tolB translocation pr 98.2 0.00053 1.2E-08 78.5 26.8 80 362-461 319-403 (428)
223 KOG1538 Uncharacterized conser 98.2 2.3E-05 5E-10 89.8 14.5 144 194-459 14-160 (1081)
224 KOG1587 Cytoplasmic dynein int 98.2 3.5E-05 7.7E-10 90.0 16.4 101 344-463 365-474 (555)
225 PF02239 Cytochrom_D1: Cytochr 98.1 0.00047 1E-08 77.5 24.1 175 173-463 16-204 (369)
226 KOG1310 WD40 repeat protein [G 98.1 0.00011 2.4E-09 83.0 18.1 122 344-467 165-309 (758)
227 PRK04792 tolB translocation pr 98.1 0.00026 5.5E-09 81.6 21.8 96 350-465 287-384 (448)
228 KOG0650 WD40 repeat nucleolar 98.1 0.00014 2.9E-09 83.1 17.9 239 190-478 397-655 (733)
229 KOG1538 Uncharacterized conser 98.1 0.00019 4.2E-09 82.5 18.7 259 74-461 23-293 (1081)
230 KOG1310 WD40 repeat protein [G 98.0 1E-05 2.2E-10 91.1 8.2 83 361-462 42-126 (758)
231 KOG0644 Uncharacterized conser 98.0 1.7E-06 3.7E-11 100.9 1.9 96 342-461 205-300 (1113)
232 PRK00178 tolB translocation pr 98.0 0.00073 1.6E-08 76.9 23.0 92 350-462 268-364 (430)
233 KOG1240 Protein kinase contain 98.0 0.00086 1.9E-08 82.0 23.8 111 347-463 1215-1336(1431)
234 KOG4227 WD40 repeat protein [G 98.0 0.0016 3.5E-08 71.2 23.6 241 173-462 127-388 (609)
235 KOG1272 WD40-repeat-containing 98.0 2.7E-05 5.9E-10 86.4 10.2 270 74-470 140-416 (545)
236 KOG2919 Guanine nucleotide-bin 98.0 0.00016 3.4E-09 77.6 15.3 185 73-399 168-366 (406)
237 KOG0974 WD-repeat protein WDR6 97.9 3.3E-05 7.1E-10 92.6 10.4 98 343-461 149-246 (967)
238 PF04762 IKI3: IKI3 family; I 97.9 0.014 3E-07 73.0 33.6 97 349-463 237-335 (928)
239 KOG2315 Predicted translation 97.9 0.00055 1.2E-08 77.9 19.3 128 172-399 250-389 (566)
240 PRK04043 tolB translocation pr 97.9 0.014 3.1E-07 66.8 30.2 49 174-222 214-268 (419)
241 PF02239 Cytochrom_D1: Cytochr 97.8 0.00019 4.2E-09 80.6 13.8 100 346-466 13-113 (369)
242 PF10282 Lactonase: Lactonase, 97.8 0.055 1.2E-06 60.1 33.2 104 350-466 167-280 (345)
243 KOG0974 WD-repeat protein WDR6 97.8 0.00038 8.1E-09 83.9 16.7 102 344-467 192-294 (967)
244 KOG2321 WD40 repeat protein [G 97.8 0.0015 3.2E-08 74.6 20.4 220 173-466 116-348 (703)
245 KOG3881 Uncharacterized conser 97.8 0.00097 2.1E-08 73.1 18.2 57 344-401 264-321 (412)
246 KOG2139 WD40 repeat protein [G 97.8 0.0001 2.2E-09 80.0 10.4 77 366-462 193-269 (445)
247 KOG1354 Serine/threonine prote 97.8 0.002 4.4E-08 69.7 19.9 78 369-462 272-360 (433)
248 PRK01029 tolB translocation pr 97.8 0.0018 3.9E-08 74.2 21.0 76 371-462 282-360 (428)
249 KOG1524 WD40 repeat-containing 97.8 0.00029 6.3E-09 79.5 13.4 85 349-456 166-250 (737)
250 PF00400 WD40: WD domain, G-be 97.7 0.00016 3.5E-09 53.6 6.7 37 421-459 3-39 (39)
251 KOG4497 Uncharacterized conser 97.6 0.00066 1.4E-08 73.0 13.1 93 346-459 111-238 (447)
252 KOG1409 Uncharacterized conser 97.6 0.0016 3.4E-08 70.6 15.4 103 345-466 171-275 (404)
253 KOG1334 WD40 repeat protein [G 97.6 0.00058 1.3E-08 76.5 12.3 297 51-460 137-465 (559)
254 KOG4547 WD40 repeat-containing 97.6 0.0073 1.6E-07 69.4 21.3 97 344-462 119-221 (541)
255 COG4946 Uncharacterized protei 97.5 0.053 1.2E-06 61.2 26.7 192 40-293 281-503 (668)
256 PLN02919 haloacid dehalogenase 97.5 0.058 1.2E-06 68.6 30.1 82 373-463 807-890 (1057)
257 KOG2321 WD40 repeat protein [G 97.5 0.002 4.3E-08 73.6 15.0 103 76-225 147-264 (703)
258 PF13360 PQQ_2: PQQ-like domai 97.5 0.15 3.2E-06 52.4 27.7 209 173-463 3-232 (238)
259 KOG2315 Predicted translation 97.4 0.066 1.4E-06 61.5 26.3 115 349-502 251-369 (566)
260 KOG4547 WD40 repeat-containing 97.4 0.0059 1.3E-07 70.1 18.0 53 348-400 163-220 (541)
261 KOG1523 Actin-related protein 97.3 0.0034 7.3E-08 67.6 13.9 99 346-460 74-175 (361)
262 KOG1275 PAB-dependent poly(A) 97.3 0.0069 1.5E-07 72.5 16.8 184 172-461 156-342 (1118)
263 KOG2314 Translation initiation 97.2 0.029 6.2E-07 64.3 20.3 291 74-462 221-526 (698)
264 KOG4497 Uncharacterized conser 97.1 0.0028 6.1E-08 68.3 10.6 89 345-453 67-155 (447)
265 COG2706 3-carboxymuconate cycl 97.1 0.2 4.4E-06 55.0 24.4 104 347-466 109-226 (346)
266 KOG1240 Protein kinase contain 97.0 0.0026 5.6E-08 78.0 10.5 96 354-463 1034-1130(1431)
267 COG4946 Uncharacterized protei 97.0 0.17 3.6E-06 57.4 23.3 98 344-462 376-478 (668)
268 smart00320 WD40 WD40 repeats. 97.0 0.0018 3.9E-08 44.6 5.5 38 360-398 3-40 (40)
269 KOG1523 Actin-related protein 97.0 0.0045 9.7E-08 66.7 10.5 103 343-462 26-131 (361)
270 KOG3914 WD repeat protein WDR4 97.0 0.002 4.4E-08 70.9 7.9 98 348-466 131-228 (390)
271 KOG1064 RAVE (regulator of V-A 97.0 0.0027 5.8E-08 80.3 9.7 87 347-465 2313-2402(2439)
272 PRK04043 tolB translocation pr 96.9 0.11 2.5E-06 59.4 22.3 81 349-452 257-339 (419)
273 KOG0280 Uncharacterized conser 96.9 0.0055 1.2E-07 65.4 10.2 106 343-466 137-246 (339)
274 COG5170 CDC55 Serine/threonine 96.9 0.056 1.2E-06 58.2 17.6 80 366-463 277-369 (460)
275 TIGR02658 TTQ_MADH_Hv methylam 96.9 0.015 3.2E-07 65.0 13.9 96 349-463 27-138 (352)
276 KOG1912 WD40 repeat protein [G 96.8 0.021 4.5E-07 67.6 15.1 102 343-463 441-553 (1062)
277 TIGR03300 assembly_YfgL outer 96.8 0.81 1.8E-05 51.1 27.8 57 173-229 115-173 (377)
278 TIGR03300 assembly_YfgL outer 96.8 1.2 2.6E-05 49.8 29.1 91 345-458 285-376 (377)
279 PF11768 DUF3312: Protein of u 96.8 0.0081 1.8E-07 69.4 11.6 90 352-463 239-331 (545)
280 KOG4227 WD40 repeat protein [G 96.8 0.0086 1.9E-07 65.7 11.1 105 342-464 71-182 (609)
281 COG5354 Uncharacterized protei 96.5 0.31 6.7E-06 55.7 20.9 90 349-461 255-348 (561)
282 PF15492 Nbas_N: Neuroblastoma 96.4 0.83 1.8E-05 49.1 22.3 31 368-399 228-258 (282)
283 PF15492 Nbas_N: Neuroblastoma 96.4 0.3 6.4E-06 52.4 18.8 96 368-464 146-262 (282)
284 KOG1645 RING-finger-containing 96.4 0.01 2.2E-07 65.7 8.1 96 351-467 175-272 (463)
285 KOG1912 WD40 repeat protein [G 96.3 0.28 6.1E-06 58.5 19.4 124 65-228 19-152 (1062)
286 PF03178 CPSF_A: CPSF A subuni 96.2 0.28 6E-06 53.8 18.7 97 349-463 107-204 (321)
287 KOG1334 WD40 repeat protein [G 96.2 0.032 7E-07 63.1 11.0 57 342-399 409-465 (559)
288 PF07433 DUF1513: Protein of u 96.1 0.63 1.4E-05 51.0 20.2 97 349-463 138-249 (305)
289 KOG4415 Uncharacterized conser 96.1 0.0043 9.3E-08 61.9 3.2 52 666-720 6-58 (247)
290 KOG1832 HIV-1 Vpr-binding prot 96.1 0.0048 1E-07 73.4 4.0 122 52-228 1097-1223(1516)
291 KOG1275 PAB-dependent poly(A) 96.0 0.18 3.8E-06 61.1 16.4 51 173-223 197-258 (1118)
292 PF04762 IKI3: IKI3 family; I 95.9 4.8 0.0001 50.9 29.0 49 173-222 281-336 (928)
293 KOG0309 Conserved WD40 repeat- 95.7 0.061 1.3E-06 63.4 10.7 53 348-401 179-233 (1081)
294 PF03178 CPSF_A: CPSF A subuni 95.6 4.4 9.6E-05 44.3 27.4 50 173-222 62-118 (321)
295 PLN02919 haloacid dehalogenase 95.5 2 4.2E-05 55.1 24.1 86 372-462 742-834 (1057)
296 KOG4532 WD40-like repeat conta 95.5 0.14 3.1E-06 54.3 11.5 104 345-467 134-239 (344)
297 smart00320 WD40 WD40 repeats. 95.4 0.056 1.2E-06 36.8 6.0 29 431-459 12-40 (40)
298 COG5354 Uncharacterized protei 95.3 0.31 6.6E-06 55.8 14.1 77 348-453 339-421 (561)
299 KOG4190 Uncharacterized conser 95.2 0.061 1.3E-06 61.4 8.5 119 342-463 750-908 (1034)
300 KOG1645 RING-finger-containing 95.2 0.85 1.8E-05 51.0 16.9 51 172-222 215-269 (463)
301 KOG4714 Nucleoporin [Nuclear s 95.2 0.059 1.3E-06 56.9 7.7 114 344-459 197-316 (319)
302 KOG4532 WD40-like repeat conta 95.0 0.76 1.6E-05 49.1 15.2 99 340-452 216-323 (344)
303 KOG4190 Uncharacterized conser 95.0 0.021 4.5E-07 65.0 4.0 85 361-460 727-811 (1034)
304 KOG1064 RAVE (regulator of V-A 94.9 0.095 2.1E-06 67.2 9.4 116 344-464 2225-2369(2439)
305 KOG0309 Conserved WD40 repeat- 94.7 0.23 5E-06 58.8 11.3 105 342-466 130-237 (1081)
306 KOG4640 Anaphase-promoting com 94.3 0.17 3.6E-06 59.2 9.0 77 370-468 21-99 (665)
307 KOG2314 Translation initiation 94.2 0.38 8.2E-06 55.6 11.4 82 349-451 282-366 (698)
308 KOG2695 WD40 repeat protein [G 93.6 0.19 4.1E-06 55.1 7.3 103 344-462 269-377 (425)
309 KOG0280 Uncharacterized conser 93.5 0.24 5.3E-06 53.2 7.8 103 343-466 182-289 (339)
310 PF08450 SGL: SMP-30/Gluconola 93.3 12 0.00025 39.1 25.8 99 349-461 115-213 (246)
311 PF00780 CNH: CNH domain; Int 93.2 13 0.00029 39.3 24.2 40 75-116 7-46 (275)
312 PF07433 DUF1513: Protein of u 93.0 17 0.00037 40.1 26.9 70 369-463 216-285 (305)
313 KOG3621 WD40 repeat-containing 92.9 0.29 6.3E-06 57.9 8.0 104 343-462 49-155 (726)
314 PF12894 Apc4_WD40: Anaphase-p 92.7 0.28 6.1E-06 38.8 5.2 30 432-461 12-41 (47)
315 COG0823 TolB Periplasmic compo 92.4 6.7 0.00015 45.2 18.2 84 350-452 263-346 (425)
316 PF13360 PQQ_2: PQQ-like domai 92.0 16 0.00034 37.3 23.3 57 173-229 86-150 (238)
317 COG0823 TolB Periplasmic compo 91.9 2.7 5.8E-05 48.5 14.2 50 173-222 218-273 (425)
318 PRK11138 outer membrane biogen 91.9 26 0.00056 39.5 25.8 56 173-228 170-232 (394)
319 KOG4714 Nucleoporin [Nuclear s 91.4 0.23 5.1E-06 52.6 4.5 95 349-462 159-255 (319)
320 KOG1409 Uncharacterized conser 91.0 0.41 9E-06 52.5 5.9 58 342-400 212-270 (404)
321 KOG2066 Vacuolar assembly/sort 90.9 0.83 1.8E-05 54.9 8.8 89 343-461 53-146 (846)
322 KOG1920 IkappaB kinase complex 90.9 39 0.00084 43.2 23.0 51 57-116 69-120 (1265)
323 KOG2041 WD40 repeat protein [G 90.9 0.42 9.2E-06 56.5 6.2 102 341-460 28-144 (1189)
324 KOG1354 Serine/threonine prote 90.8 0.68 1.5E-05 50.8 7.4 91 369-466 25-121 (433)
325 KOG2114 Vacuolar assembly/sort 90.5 35 0.00076 42.1 21.6 49 348-399 192-242 (933)
326 PF11768 DUF3312: Protein of u 90.4 0.52 1.1E-05 54.9 6.5 57 343-402 275-331 (545)
327 PRK02888 nitrous-oxide reducta 90.3 17 0.00038 43.6 18.9 55 345-401 339-405 (635)
328 KOG3617 WD40 and TPR repeat-co 90.2 0.66 1.4E-05 55.9 7.2 98 344-465 36-135 (1416)
329 PF08553 VID27: VID27 cytoplas 89.6 35 0.00076 42.4 21.3 56 343-400 592-647 (794)
330 KOG4640 Anaphase-promoting com 89.5 1.1 2.5E-05 52.6 8.2 58 342-401 35-93 (665)
331 KOG1920 IkappaB kinase complex 89.2 25 0.00055 44.7 19.7 98 349-463 222-324 (1265)
332 KOG3914 WD repeat protein WDR4 89.2 0.43 9.4E-06 53.1 4.4 74 73-193 161-235 (390)
333 KOG2695 WD40 repeat protein [G 89.1 0.84 1.8E-05 50.2 6.4 109 346-472 231-343 (425)
334 PF00780 CNH: CNH domain; Int 88.8 14 0.0003 39.2 15.6 48 182-229 216-265 (275)
335 PF04841 Vps16_N: Vps16, N-ter 87.8 57 0.0012 37.4 23.9 47 172-219 60-109 (410)
336 PF12894 Apc4_WD40: Anaphase-p 87.7 1.4 3E-05 34.9 5.2 30 369-399 11-40 (47)
337 PF14783 BBS2_Mid: Ciliary BBS 87.1 6.6 0.00014 36.9 10.2 65 372-460 2-70 (111)
338 KOG2066 Vacuolar assembly/sort 86.1 25 0.00054 43.0 16.5 46 173-218 93-145 (846)
339 PF00930 DPPIV_N: Dipeptidyl p 85.5 2.5 5.4E-05 47.1 7.9 109 348-463 22-133 (353)
340 PF06433 Me-amine-dh_H: Methyl 85.5 1.9 4.1E-05 47.9 6.7 58 172-229 268-330 (342)
341 PF08450 SGL: SMP-30/Gluconola 84.5 55 0.0012 34.1 30.4 60 371-451 185-245 (246)
342 PRK11138 outer membrane biogen 84.5 24 0.00053 39.7 15.4 52 344-398 340-392 (394)
343 KOG2079 Vacuolar assembly/sort 84.4 1.2 2.6E-05 55.2 4.9 74 380-473 98-172 (1206)
344 KOG2114 Vacuolar assembly/sort 83.1 5.3 0.00012 48.7 9.4 106 342-459 38-153 (933)
345 KOG2395 Protein involved in va 82.8 61 0.0013 38.2 17.2 55 343-399 445-499 (644)
346 KOG0882 Cyclophilin-related pe 82.5 4.7 0.0001 46.0 8.2 112 346-463 119-233 (558)
347 PRK02888 nitrous-oxide reducta 81.2 12 0.00025 45.0 11.3 105 348-462 295-405 (635)
348 PF10313 DUF2415: Uncharacteri 81.1 4.1 8.8E-05 31.8 5.0 29 434-462 3-34 (43)
349 PRK13616 lipoprotein LpqB; Pro 81.1 10 0.00022 45.7 11.0 97 349-466 379-482 (591)
350 KOG2041 WD40 repeat protein [G 80.7 1.9 4E-05 51.4 4.4 95 344-461 88-186 (1189)
351 KOG1832 HIV-1 Vpr-binding prot 79.9 1 2.2E-05 54.7 2.0 100 343-464 1117-1217(1516)
352 KOG2079 Vacuolar assembly/sort 79.6 4.5 9.8E-05 50.4 7.4 57 344-401 104-161 (1206)
353 PF06433 Me-amine-dh_H: Methyl 78.9 1.2E+02 0.0026 34.1 17.9 51 350-401 270-321 (342)
354 COG3490 Uncharacterized protei 78.6 95 0.0021 34.1 15.9 54 175-229 51-109 (366)
355 KOG2444 WD40 repeat protein [G 78.4 4.4 9.6E-05 42.6 5.9 104 344-467 75-183 (238)
356 COG5170 CDC55 Serine/threonine 78.2 4.8 0.0001 43.9 6.3 88 369-463 26-119 (460)
357 PF12234 Rav1p_C: RAVE protein 77.5 24 0.00052 42.7 12.5 102 348-460 50-155 (631)
358 PF10168 Nup88: Nuclear pore c 77.1 27 0.00059 43.0 13.1 90 370-466 85-184 (717)
359 cd00216 PQQ_DH Dehydrogenases 76.8 1.6E+02 0.0034 34.5 21.5 57 173-229 120-193 (488)
360 PF04053 Coatomer_WDAD: Coatom 76.4 1.5E+02 0.0033 34.4 18.4 58 381-462 117-174 (443)
361 COG3391 Uncharacterized conser 75.8 40 0.00088 38.1 13.4 94 348-462 95-191 (381)
362 KOG3617 WD40 and TPR repeat-co 75.0 5 0.00011 48.9 5.8 67 333-400 65-131 (1416)
363 PF08596 Lgl_C: Lethal giant l 74.9 39 0.00085 38.7 12.9 87 371-461 3-115 (395)
364 PF05694 SBP56: 56kDa selenium 74.9 35 0.00077 39.4 12.3 47 171-217 220-275 (461)
365 PF02897 Peptidase_S9_N: Proly 74.8 25 0.00054 39.8 11.4 100 345-462 146-261 (414)
366 cd00216 PQQ_DH Dehydrogenases 74.8 1.8E+02 0.0038 34.1 21.4 57 173-229 71-138 (488)
367 KOG1897 Damage-specific DNA bi 74.7 2.5E+02 0.0054 35.7 22.7 96 348-461 847-942 (1096)
368 PF08553 VID27: VID27 cytoplas 74.3 8.9 0.00019 47.4 8.0 93 347-461 550-647 (794)
369 PF00930 DPPIV_N: Dipeptidyl p 73.8 1.1E+02 0.0023 34.1 16.0 50 173-222 23-74 (353)
370 PF14783 BBS2_Mid: Ciliary BBS 73.5 66 0.0014 30.3 11.7 87 343-456 19-109 (111)
371 PF10313 DUF2415: Uncharacteri 73.1 8.2 0.00018 30.1 4.7 30 370-400 1-33 (43)
372 COG3386 Gluconolactonase [Carb 71.9 1.7E+02 0.0036 32.5 20.6 100 349-461 143-243 (307)
373 PF07676 PD40: WD40-like Beta 71.1 13 0.00029 27.3 5.5 31 367-397 6-38 (39)
374 PF14870 PSII_BNR: Photosynthe 69.7 23 0.00049 39.1 9.1 70 369-459 144-213 (302)
375 PF08596 Lgl_C: Lethal giant l 69.6 33 0.00072 39.2 10.8 83 361-462 78-174 (395)
376 PF14781 BBS2_N: Ciliary BBSom 69.5 25 0.00054 34.2 8.2 53 173-225 20-87 (136)
377 COG3391 Uncharacterized conser 68.2 70 0.0015 36.2 13.1 94 347-462 138-240 (381)
378 PF07676 PD40: WD40-like Beta 67.1 12 0.00026 27.6 4.5 26 433-458 10-38 (39)
379 PF05096 Glu_cyclase_2: Glutam 65.1 1.4E+02 0.0031 32.3 13.8 58 172-229 109-167 (264)
380 PF02897 Peptidase_S9_N: Proly 65.0 32 0.00069 38.9 9.5 63 371-453 125-191 (414)
381 PF14781 BBS2_N: Ciliary BBSom 61.6 86 0.0019 30.6 10.2 58 171-228 71-134 (136)
382 PF08728 CRT10: CRT10; InterP 61.0 3.4E+02 0.0073 33.7 17.3 75 370-461 164-246 (717)
383 COG3386 Gluconolactonase [Carb 59.6 72 0.0016 35.3 10.7 32 435-466 166-198 (307)
384 smart00036 CNH Domain found in 57.8 97 0.0021 33.9 11.4 38 76-115 14-52 (302)
385 PF12234 Rav1p_C: RAVE protein 55.3 36 0.00077 41.3 7.9 45 173-217 51-102 (631)
386 PRK13616 lipoprotein LpqB; Pro 55.2 58 0.0012 39.3 9.7 98 348-465 429-529 (591)
387 PF05694 SBP56: 56kDa selenium 55.2 1.7E+02 0.0038 33.9 12.9 107 346-465 219-346 (461)
388 PF02333 Phytase: Phytase; In 53.4 81 0.0017 36.0 9.9 26 565-590 217-242 (381)
389 PF12657 TFIIIC_delta: Transcr 52.6 93 0.002 31.1 9.4 30 433-462 87-122 (173)
390 smart00036 CNH Domain found in 51.1 2.9E+02 0.0062 30.3 13.7 43 187-229 238-280 (302)
391 PF10647 Gmad1: Lipoprotein Lp 50.4 2E+02 0.0044 30.5 12.1 75 371-462 67-145 (253)
392 PF06977 SdiA-regulated: SdiA- 49.1 2.1E+02 0.0045 30.7 11.8 83 364-466 16-99 (248)
393 KOG1916 Nuclear protein, conta 47.4 13 0.00028 45.9 2.5 120 345-479 201-341 (1283)
394 PF14727 PHTB1_N: PTHB1 N-term 46.9 5.2E+02 0.011 30.0 29.0 52 171-222 95-166 (418)
395 KOG1898 Splicing factor 3b, su 43.3 8.6E+02 0.019 31.5 19.4 94 349-462 954-1049(1205)
396 TIGR02276 beta_rpt_yvtn 40-res 42.2 1.3E+02 0.0029 21.8 6.7 23 379-401 1-23 (42)
397 KOG1898 Splicing factor 3b, su 42.0 4E+02 0.0087 34.2 13.8 60 173-233 954-1019(1205)
398 KOG1008 Uncharacterized conser 40.8 11 0.00025 44.7 0.8 104 345-462 76-185 (783)
399 PF14655 RAB3GAP2_N: Rab3 GTPa 40.6 1.6E+02 0.0035 34.0 9.9 40 361-401 299-338 (415)
400 KOG1008 Uncharacterized conser 40.5 10 0.00023 45.0 0.4 92 347-460 127-224 (783)
401 PF04841 Vps16_N: Vps16, N-ter 39.4 1.9E+02 0.0041 33.2 10.4 29 432-461 81-109 (410)
402 PRK10115 protease 2; Provision 38.6 4.7E+02 0.01 32.2 14.2 96 349-462 153-256 (686)
403 PF04053 Coatomer_WDAD: Coatom 38.6 59 0.0013 37.8 6.1 44 173-217 126-171 (443)
404 KOG3621 WD40 repeat-containing 36.7 64 0.0014 39.1 6.0 79 368-466 32-110 (726)
405 PRK13684 Ycf48-like protein; P 36.3 1.5E+02 0.0033 32.9 8.7 67 369-456 172-238 (334)
406 PF01731 Arylesterase: Arylest 36.3 1.5E+02 0.0033 26.5 7.1 50 348-400 35-84 (86)
407 PF05787 DUF839: Bacterial pro 34.9 82 0.0018 37.5 6.6 29 421-449 491-519 (524)
408 KOG0882 Cyclophilin-related pe 34.8 45 0.00098 38.4 4.2 118 344-461 25-174 (558)
409 PF10647 Gmad1: Lipoprotein Lp 34.7 1.9E+02 0.0042 30.7 8.9 67 371-459 25-93 (253)
410 PF11715 Nup160: Nucleoporin N 32.8 2.1E+02 0.0046 33.8 9.8 75 74-190 157-257 (547)
411 KOG4460 Nuclear pore complex, 32.7 3E+02 0.0065 32.8 10.2 86 371-463 105-200 (741)
412 KOG2444 WD40 repeat protein [G 31.8 48 0.001 35.1 3.6 56 345-401 120-178 (238)
413 PF14761 HPS3_N: Hermansky-Pud 31.7 2.4E+02 0.0052 29.7 8.6 44 391-452 37-80 (215)
414 PF07250 Glyoxal_oxid_N: Glyox 30.6 1.4E+02 0.003 32.0 6.9 89 351-452 48-138 (243)
415 KOG2395 Protein involved in va 29.0 1.2E+02 0.0025 36.0 6.3 91 348-460 403-499 (644)
416 PF12657 TFIIIC_delta: Transcr 28.9 5.6E+02 0.012 25.4 10.7 26 435-462 8-33 (173)
417 PF07569 Hira: TUP1-like enhan 28.6 2.5E+02 0.0055 29.3 8.4 74 377-461 18-95 (219)
418 PF07569 Hira: TUP1-like enhan 27.5 1.7E+02 0.0038 30.5 7.0 52 346-399 29-94 (219)
419 PF01436 NHL: NHL repeat; Int 27.3 1.2E+02 0.0025 21.0 3.8 25 434-458 4-28 (28)
420 PF12341 DUF3639: Protein of u 26.9 1.2E+02 0.0026 21.4 3.7 25 433-459 3-27 (27)
421 KOG4649 PQQ (pyrrolo-quinoline 26.4 8.9E+02 0.019 26.6 13.7 126 172-396 32-162 (354)
422 PF01731 Arylesterase: Arylest 26.3 1E+02 0.0022 27.6 4.2 28 435-462 57-85 (86)
423 smart00564 PQQ beta-propeller 26.3 1.4E+02 0.003 20.7 4.2 24 204-227 9-32 (33)
424 TIGR02608 delta_60_rpt delta-6 25.9 1.5E+02 0.0033 24.3 4.8 32 434-465 3-39 (55)
425 TIGR03075 PQQ_enz_alc_DH PQQ-d 24.9 2.3E+02 0.0049 33.8 8.1 57 173-229 441-500 (527)
426 PF03022 MRJP: Major royal jel 24.4 2.9E+02 0.0064 30.1 8.3 57 172-228 33-105 (287)
427 PF03088 Str_synth: Strictosid 24.2 2.1E+02 0.0045 25.8 5.8 45 344-389 32-76 (89)
428 PF14583 Pectate_lyase22: Olig 23.9 1.1E+03 0.025 27.0 19.7 40 171-210 166-208 (386)
429 PRK10115 protease 2; Provision 23.4 3.7E+02 0.008 33.2 9.7 72 370-462 127-208 (686)
430 PF10214 Rrn6: RNA polymerase 23.2 3.8E+02 0.0083 33.4 9.9 96 358-462 131-233 (765)
431 KOG2377 Uncharacterized conser 22.9 2.2E+02 0.0048 33.3 6.9 79 369-465 66-144 (657)
432 PF12768 Rax2: Cortical protei 22.8 6.7E+02 0.015 27.4 10.6 53 349-401 16-73 (281)
433 PF03088 Str_synth: Strictosid 22.5 3.5E+02 0.0076 24.4 7.0 17 434-450 59-75 (89)
434 PF10395 Utp8: Utp8 family; I 22.3 1.5E+03 0.033 27.9 14.5 129 56-229 129-269 (670)
435 COG3490 Uncharacterized protei 21.9 3.5E+02 0.0077 29.9 7.9 71 374-461 72-148 (366)
436 PF06977 SdiA-regulated: SdiA- 21.2 7.2E+02 0.016 26.6 10.2 72 369-458 170-247 (248)
437 COG3211 PhoX Predicted phospha 21.2 2.2E+02 0.0048 34.1 6.7 29 421-449 543-571 (616)
438 PF13570 PQQ_3: PQQ-like domai 21.0 98 0.0021 22.9 2.7 18 567-584 21-38 (40)
439 PLN00033 photosystem II stabil 20.8 3.8E+02 0.0082 30.8 8.5 64 372-456 241-304 (398)
440 KOG0183 20S proteasome, regula 20.6 61 0.0013 33.8 1.9 24 569-592 7-32 (249)
441 COG2133 Glucose/sorbosone dehy 20.6 3.3E+02 0.0071 31.4 7.8 20 371-390 178-197 (399)
442 TIGR03032 conserved hypothetic 20.1 9E+02 0.02 27.2 10.7 30 173-202 282-314 (335)
No 1
>KOG2109 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=1.2e-58 Score=514.02 Aligned_cols=630 Identities=30% Similarity=0.356 Sum_probs=472.4
Q ss_pred CCchhhhhhceeeeeccCCcceeeehhhcccccceecccCCCCCCCcEEEEEEeeccCCCCCCCeEEEEEecCcEEEEEc
Q 003907 12 LPNSLKIISSCLKTVSTNASTVASTVRSAGASVAASISNASEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNGFQVLDV 91 (787)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~v~wa~Fd~l~~~~~~~~~vL~lG~~~G~qVWdv 91 (787)
+|+|||+||.|+|+.|+|+.+++ .|++++.+.+.++++|||+|++||+ .+...++||++++.+||||||.
T Consensus 1 ~p~s~~~vs~c~k~~ssg~~~~~-------~s~~~~~ss~~~e~~dqvlw~~fD~---~~~~~~~Vlll~~~~gfqv~d~ 70 (788)
T KOG2109|consen 1 MPPSANSVSGCKKKNSSGHQRPQ-------QSHQQTQSSPLPEEEDQVLWIKFDP---KPEVLEEVLLLNREEGFQVVDE 70 (788)
T ss_pred CCcccchhccchhhcccccccHH-------HHHHhhcCCCChhhhccccccccCC---chhHHHHHHHHhhccCceEEee
Confidence 59999999999999998877766 4567777888899999999999994 2455789999999999999999
Q ss_pred cCCCceeEeeeeccCcEEEEEEecCCCCCCCCCCccccCcEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCC
Q 003907 92 EDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNS 171 (787)
Q Consensus 92 ~~~~~~~ells~~dg~V~~v~~lP~P~~~~~~d~F~~srpLLavV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~ 171 (787)
+++..+.+.++.+||++.|++|++.|+.+...++|+.++|++|+|... .+.+. ...-++|+.. ...
T Consensus 71 ~Dsp~vh~~vs~~dd~~~f~sm~~~pl~sg~~~gf~ss~avpavv~~t---~S~p~-----I~~S~~Gse~------d~t 136 (788)
T KOG2109|consen 71 TDSPTVHKEVSISDDLLDFSSMDKSPLSSGPDSGFESSDAVPAVVRTT---TSPPT-----IPPSQTGSEQ------DST 136 (788)
T ss_pred ccCCccceeeeecCCcceecccCCCCccCCCCCccccCCceeeecccc---cCCCc-----CCCCCCccee------ccc
Confidence 999999999999999999999999999999889999999999986622 22210 1111344421 113
Q ss_pred CCEEEEEECCCCeEEEEEeCCCcEEEEEecCCeEEEEeCCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeE
Q 003907 172 PTAVRFYSFQSHCYEHVLRFRSSVCMVRCSPRIVAVGLATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMA 251 (787)
Q Consensus 172 p~tVrlWdlktg~~v~tL~f~s~V~sV~~s~~~LaV~~~~~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~~~~~lA 251 (787)
+....++|+++..++|.|+|+ +|+|||+.|++..+.+.+++.|+. ..++||++++
T Consensus 137 ~an~~v~dl~S~~yah~l~fR-------------------qi~CfDa~tle~d~~~~~n~~p~l------~l~VGYGpla 191 (788)
T KOG2109|consen 137 QANEMVVDLMSLDYAHALPFR-------------------QIHCFDAPTLEIDSMNTINTKPRL------LLSVGYGPLA 191 (788)
T ss_pred ccccceeccccccchhccccc-------------------ccccccCcccCCchhhcccccccc------ceeecccccc
Confidence 456778999999999999996 899999999999999998888743 2356899999
Q ss_pred EccceEEEecCCceecCcceeccccCCC-CCcCCCcCCCCCceeEeeehhhhhhhhcccc-------eeecccccccCCC
Q 003907 252 VGPRWLAYASNTLLLSNSGRLSPQNLTP-SGVSPSTSPGGSSLVARYAMEHSKQFAAGLS-------KTLSKYCQELLPD 323 (787)
Q Consensus 252 lspr~LAyas~~~~l~~~g~~s~q~lt~-~~~s~s~sp~~g~lva~~a~d~sk~la~G~~-------ktls~~~~~l~p~ 323 (787)
+++||+||++....- .+.+.+++ ..+++++++.++-.+|++|+|.+|++|.|+. +.+++||...++.
T Consensus 192 Vg~rWaaya~~~a~~-----vss~~Vt~~~~VspttSs~~~~~va~~A~essk~lA~gl~nlgDkGy~~isglc~g~~~~ 266 (788)
T KOG2109|consen 192 VGRRWAAYAQTLANQ-----VSSHLVTMGMSVSPTTSSQITAEVAEWAQESSKELAGGLVNLGDKGYVLISGLCRGSYQI 266 (788)
T ss_pred ceeeeeeeccCcchh-----hhhccccccccccCCCCCchhHHHHHhhhhhhHHHhhhhcccccchHHHHHHHhhcccCC
Confidence 999999999864321 12244555 6778888888888999999999999999966 5789999988776
Q ss_pred CCCCCcccCCccccccccccccCC-Cce--EEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCC
Q 003907 324 GSSSPVSPNSVWKVGRHAGADMDN-AGI--VVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIM 400 (787)
Q Consensus 324 ~s~~~~s~s~~~~~~~~~~~s~~~-dG~--V~IwDl~s~~~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~ 400 (787)
+......-......+.....++.. -|+ +.+-|+.+...+.+|++|+.+|++++|+++|.+|++++..|+.|++|.++
T Consensus 267 g~gpglgg~~~~~vGrvg~vsaesV~g~~~vivkdf~S~a~i~QfkAhkspiSaLcfdqsgsllViasi~g~nVnvfRim 346 (788)
T KOG2109|consen 267 GTGPGLGGFEEVLVGRVGPVSAESVLGNNLVIVKDFDSFADIRQFKAHKSPISALCFDQSGSLLVIASITGRNVNVFRIM 346 (788)
T ss_pred CCCCCCCCcCceeccccccccceeecccceEEeecccchhhhhheeeecCcccccccccCceEEEEEeeccceeeeEEec
Confidence 644333222211122222223322 455 88899999999999999999999999999999999999999999999998
Q ss_pred CCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEeCCCCCCccccccccCCCCCCc
Q 003907 401 PSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQTLSSQGGDPY 480 (787)
Q Consensus 401 ~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~~~gg~~~~~~H~~~~~~~~ 480 (787)
+.....+.+.++++|. .||.+.+.|++|+|+-+.+|++.+|-+|+= |.
T Consensus 347 et~~t~~~~~qs~~~s---------~ra~t~aviqdicfs~~s~~r~~gsc~Ge~-----------------------P~ 394 (788)
T KOG2109|consen 347 ETVCTVNVSDQSLVVS---------PRANTAAVIQDICFSEVSTIRTAGSCEGEP-----------------------PA 394 (788)
T ss_pred cccccccccccccccc---------hhcchHHHHHHHhhhhhcceEeecccCCCC-----------------------cc
Confidence 7543333332222221 478888899999999999999999955532 45
Q ss_pred ccCCCCCCccccCCCCCcCCcCCCCCceeecceeeEEecCCCccccccccccccCCccccccceeeeecccCcccccccc
Q 003907 481 LFPVLSLPWWCTSSGISEQQCVLPPPPVTLSVVSRIKYSSFGWLNTVSNASASSMGKVFVPSGAVAAVFHNSIAHSSQHV 560 (787)
Q Consensus 481 ~~~~~~~~~~~~~~~s~~q~~~~~p~~~~l~~v~~i~~~~~~w~~~v~~~~~~a~~~~~~p~~~v~~~f~~~~~~~~~~~ 560 (787)
+.+...+|||-.++++..-|..+.+.+.++...+++..-+. | ++++-.++.-.|...-..+|+.......
T Consensus 395 ls~t~~lp~~A~~Sl~~gl~s~g~~aa~gla~~sag~~a~s----~---~asSv~s~s~~pd~ks~gv~~gsv~k~~--- 464 (788)
T KOG2109|consen 395 LSLTCQLPAYADTSLDLGLQSSGGLAAEGLATSSAGYTAHS----Y---TASSVFSRSVKPDSKSVGVGSGSVTKAN--- 464 (788)
T ss_pred cccccccchhhchhhhccccccCcccceeeeeccccccccc----c---ccceeeccccccchhhccceeeeccccC---
Confidence 66677889999999888888887787878877777665431 1 1222223334566666777777643211
Q ss_pred ccccCccccEEEEcCCc-cEEEEecccCCCCCCCCC-CCcccccccccccCCc-eeEeecccccceeeccCCCccccccc
Q 003907 561 NSRTNSLEHLLVYTPSG-YVVQHELLPSIGMGPSDD-GSRIRAASLMCLQEDD-LQVRVEPVQWWDVCRRSDWPEREEFI 637 (787)
Q Consensus 561 ~~~~~~~~~LlV~s~~G-~l~~y~l~p~~g~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~w~~~r~~~~~e~~~~~ 637 (787)
...+..+..|||+.|.| +++||-|.+.+++.-.+. ....+-.+ +...+++ .++.|+|.+.|+.|++-+|+|++++
T Consensus 465 q~~~~~l~~llv~~psGd~vvqh~vahs~~gv~~Ef~~~~~l~lS-ad~~e~ef~~f~V~Ph~~wsslaav~hly~l~r- 542 (788)
T KOG2109|consen 465 QGVITVLNLLLVGEPSGDGVVQHYVAHSDPGVYIEFSPDQRLVLS-ADANENEFNIFLVMPHATWSSLAAVQHLYKLNR- 542 (788)
T ss_pred ccchhhhhheeeecCCCCceeEEEeeccCccceeeecccccceec-ccccccccceEEeecccccHHHhhhhhhhhccC-
Confidence 13345588899999999 999999999998765544 33333332 3445677 9999999999999999999999997
Q ss_pred cccccCCCCceeeecccccCCCCCCCcccccccceecccccccCCCCccccceeEeeeeeEEeccCCccccccceeEEEE
Q 003907 638 SEATCDGHGAVEIFQNKSDCEDNYGIDFLDINDCIVEKSTFKNCSVKSYERSHWYLSNAEVQMSSGRLPIWQSSKISFFK 717 (787)
Q Consensus 638 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~s~~e~~~~~~~~p~w~~~~~~f~~ 717 (787)
+.|.. +.+ .....++....- + +. +...+.-+.+|-|+-+||+++|.. +|+|+|.+ .||-
T Consensus 543 -G~Tsa-----Kv~-~~afs~dsrw~A---~--------~t-~~~TthVfk~hpYgg~aeqrth~~-lp~vnk~s-rFhr 601 (788)
T KOG2109|consen 543 -GSTSA-----KVV-STAFSEDSRWLA---I--------TT-NHATTHVFKVHPYGGKAEQRTHGD-LPFVNKES-RFHR 601 (788)
T ss_pred -CCccc-----eee-eeEeecchhhhh---h--------hh-cCCceeeeeeccccccccceecCC-chhccchh-hhcc
Confidence 44333 111 111111100000 0 00 124567789999999999999999 99999999 9999
Q ss_pred cCCccc------cCCCCCceEEEEeeceeeeeeccCcccccccccccccC
Q 003907 718 MDSPRA------NTHASGEFEIEKVSVHEVEIKRKELLPVFDHFQCIKPS 761 (787)
Q Consensus 718 ~~~~~~------~~~~~~~~ei~~~~~~~~~~~~k~~~p~~~~~~~~~~~ 761 (787)
|...+. +...++|.||+++.++++|+|+|||+|+++ .++.++.
T Consensus 602 sagl~~d~~~~~s~ggg~e~ei~~~~~~t~e~r~~dllPvy~-~tS~rsr 650 (788)
T KOG2109|consen 602 SAGLTDDADVTASIGGGKEREIADSCSYTKEHRIADLLPVYA-KTSGRSR 650 (788)
T ss_pred ccCCCccccccccCCCCccceecccccccccccccccCCccc-ccCcccc
Confidence 998543 455667999999999999999999999999 5555544
No 2
>PF12490 BCAS3: Breast carcinoma amplified sequence 3 ; InterPro: IPR022175 This domain family is found in eukaryotes, and is typically between 229 and 245 amino acids in length. The proteins in this family have been shown to be proto-oncogenes implicated in the development of breast cancer.
Probab=100.00 E-value=5.8e-54 Score=450.82 Aligned_cols=238 Identities=47% Similarity=0.744 Sum_probs=202.6
Q ss_pred CCceeecceeeEEecC-CCccccccccccccCC-ccccccceeeeecccCccccccccccc-cCccccEEEEcCCccEEE
Q 003907 505 PPPVTLSVVSRIKYSS-FGWLNTVSNASASSMG-KVFVPSGAVAAVFHNSIAHSSQHVNSR-TNSLEHLLVYTPSGYVVQ 581 (787)
Q Consensus 505 p~~~~l~~v~~i~~~~-~~w~~~v~~~~~~a~~-~~~~p~~~v~~~f~~~~~~~~~~~~~~-~~~~~~LlV~s~~G~l~~ 581 (787)
|+|++|+||+|||+++ .||.|+++++++++++ +...+++++|+.||++......+...+ ...+++|||++|+|+|+|
T Consensus 1 P~Pv~l~~vsrIK~~~~~g~~~tv~~aassa~g~~~~~~sga~a~~f~~~~~~~~~~~~~~~~~~~~~LlV~spsG~Liq 80 (251)
T PF12490_consen 1 PPPVTLSVVSRIKQGNTLGWLNTVSNAASSATGGKPSSVSGAFASSFHNSKGSSSEPSDSSSSKAVESLLVFSPSGHLIQ 80 (251)
T ss_pred CCCEEechHHhhcCCccccccccccccccchhcCCcccceeEEccccccCCCCcccccccccccccceEEEECCCCcEEE
Confidence 6789999999999998 8999999999999888 889999999999999866555544343 688999999999999999
Q ss_pred EecccCCCCCCCCCCCcccccccccccCCceeEeecccccceeeccCCCccccc-cccccccCCCCceeeecccccCCC-
Q 003907 582 HELLPSIGMGPSDDGSRIRAASLMCLQEDDLQVRVEPVQWWDVCRRSDWPEREE-FISEATCDGHGAVEIFQNKSDCED- 659 (787)
Q Consensus 582 y~l~p~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~r~~~~~e~~~-~~~~~~~~~~~~~~~~~~~~~~~~- 659 (787)
|+|+|+.+++....+++.+++....++|++|||+|||+|||||||+.+|+||++ ++.+...+++.... .++++++
T Consensus 81 y~L~p~~~~~~~~~~~~~~~~~~~~~~~~~l~l~vep~~~Wdl~R~~~w~e~~~d~~~~~~~~~~~~~~---~~~~~~~~ 157 (251)
T PF12490_consen 81 YELRPSPGSDPTEGGSGNGPPSESQMDDTELRLVVEPVQQWDLCRRPNWPEREEDCVPPLPENNPLDSA---SKIDPSDC 157 (251)
T ss_pred EEEeeccccCcccccccccCccccccccCcceEEeeeccceeEeccccCCccchhccCCCCCCCHhhhh---hhcccccc
Confidence 999999999988888888888766667799999999999999999999999999 55544344443322 2444444
Q ss_pred CCCCcccccccceecccccccCCCCccccceeEeeeeeEEeccCC-ccccccceeEEEEcCCccc-----cCCCC--Cce
Q 003907 660 NYGIDFLDINDCIVEKSTFKNCSVKSYERSHWYLSNAEVQMSSGR-LPIWQSSKISFFKMDSPRA-----NTHAS--GEF 731 (787)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~s~~e~~~~~~~-~p~w~~~~~~f~~~~~~~~-----~~~~~--~~~ 731 (787)
.++++.++++.+.+.+. +++++|++||||||||||||+++ +||||||||+||+|.++.. ++..+ |||
T Consensus 158 ~~~~~~~~~~~~~~~~~-----~~~~~e~~~~wlS~vEi~th~~phrpLW~gpQf~F~~~~~~~~~~~~~s~~~~~~~e~ 232 (251)
T PF12490_consen 158 RKGNSVNPSNDSYVSKE-----SDSPEERDHWWLSNVEIQTHSGPHRPLWMGPQFSFKTMSSPSSSELNISSSSGEAGEI 232 (251)
T ss_pred cccCCcccccccccccc-----CCCcccccCcEEeeeeeEeccCCccccccCCcEEEEEecCCCCccccccccccccCce
Confidence 34677888887666555 78899999999999999999999 8999999999999998652 45566 999
Q ss_pred EEEEeeceeeeeeccCccc
Q 003907 732 EIEKVSVHEVEIKRKELLP 750 (787)
Q Consensus 732 ei~~~~~~~~~~~~k~~~p 750 (787)
||||||+|+||+|||||||
T Consensus 233 EIE~~~~~~ve~r~k~l~p 251 (251)
T PF12490_consen 233 EIEKIPTREVEIRRKDLLP 251 (251)
T ss_pred eeccccccceeeeccccCC
Confidence 9999999999999999998
No 3
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=100.00 E-value=9.3e-49 Score=413.08 Aligned_cols=325 Identities=27% Similarity=0.438 Sum_probs=279.5
Q ss_pred CCCCCcEEEEEEeeccCCCCCCCeEEEEEecCcEEEEEccCCCceeEeeeeccCcEEEEEEecCCCCCCCCCCccccCcE
Q 003907 53 EDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNGFQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPF 132 (787)
Q Consensus 53 ~~~~~~v~wa~Fd~l~~~~~~~~~vL~lG~~~G~qVWdv~~~~~~~ells~~dg~V~~v~~lP~P~~~~~~d~F~~srpL 132 (787)
++.+..+.+.+|+| +..+|.+|..+|+++|.+++.+ +..+...+.+.+++|| |.++ |
T Consensus 2 ~~~~~ti~~~~~Nq-------d~~~lsvGs~~Gyk~~~~~~~~---k~~~~~~~~~~IvEmL-----------FSSS--L 58 (391)
T KOG2110|consen 2 NGKKPTINFIGFNQ-------DSTLLSVGSKDGYKIFSCSPFE---KCFSKDTEGVSIVEML-----------FSSS--L 58 (391)
T ss_pred CCCCcceeeeeecc-------ceeEEEccCCCceeEEecCchH---HhhcccCCCeEEEEee-----------cccc--e
Confidence 35677899999997 4789999999999999998854 4566667889999999 9999 9
Q ss_pred EEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCCcEEEEEecCCeEEEEeCCe
Q 003907 133 LLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRSSVCMVRCSPRIVAVGLATQ 212 (787)
Q Consensus 133 LavV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~v~tL~f~s~V~sV~~s~~~LaV~~~~~ 212 (787)
||+|..+ .|++++++++|.+..||++.|+++|++|++|+++|+|+++++
T Consensus 59 vaiV~~~-------------------------------qpr~Lkv~~~Kk~~~ICe~~fpt~IL~VrmNr~RLvV~Lee~ 107 (391)
T KOG2110|consen 59 VAIVSIK-------------------------------QPRKLKVVHFKKKTTICEIFFPTSILAVRMNRKRLVVCLEES 107 (391)
T ss_pred eEEEecC-------------------------------CCceEEEEEcccCceEEEEecCCceEEEEEccceEEEEEccc
Confidence 9998752 258999999999999999999999999999999999999999
Q ss_pred EEEEECCCCceeEEEEec-CCcccCCCCccccccccceeEEcc----ceEEEecCCceecCcceeccccCCCCCcCCCcC
Q 003907 213 IYCFDALTLENKFSVLTY-PVPQLAGQGAVGINVGYGPMAVGP----RWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTS 287 (787)
Q Consensus 213 I~iwD~~T~e~l~tl~t~-p~p~~~~~~~~~~~~~~~~lAlsp----r~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~s 287 (787)
|||||+.+|+.+++|.+. |+| .+.+|++| .||||+++.
T Consensus 108 IyIydI~~MklLhTI~t~~~n~-------------~gl~AlS~n~~n~ylAyp~s~------------------------ 150 (391)
T KOG2110|consen 108 IYIYDIKDMKLLHTIETTPPNP-------------KGLCALSPNNANCYLAYPGST------------------------ 150 (391)
T ss_pred EEEEecccceeehhhhccCCCc-------------cceEeeccCCCCceEEecCCC------------------------
Confidence 999999999999999975 665 46788887 588887631
Q ss_pred CCCCceeEeeehhhhhhhhcccceeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECCCCcEEEEecc
Q 003907 288 PGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKA 367 (787)
Q Consensus 288 p~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~v~~~~a 367 (787)
..|.|.|||+.+.+.+..|.+
T Consensus 151 -----------------------------------------------------------t~GdV~l~d~~nl~~v~~I~a 171 (391)
T KOG2110|consen 151 -----------------------------------------------------------TSGDVVLFDTINLQPVNTINA 171 (391)
T ss_pred -----------------------------------------------------------CCceEEEEEcccceeeeEEEe
Confidence 257899999999999999999
Q ss_pred CCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEE
Q 003907 368 HTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIA 447 (787)
Q Consensus 368 H~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~LA 447 (787)
|.++|.||+||++|++|||||++|++||||.+.. | +++|+||||.....|++|+||||+++|+
T Consensus 172 H~~~lAalafs~~G~llATASeKGTVIRVf~v~~-------G----------~kl~eFRRG~~~~~IySL~Fs~ds~~L~ 234 (391)
T KOG2110|consen 172 HKGPLAALAFSPDGTLLATASEKGTVIRVFSVPE-------G----------QKLYEFRRGTYPVSIYSLSFSPDSQFLA 234 (391)
T ss_pred cCCceeEEEECCCCCEEEEeccCceEEEEEEcCC-------c----------cEeeeeeCCceeeEEEEEEECCCCCeEE
Confidence 9999999999999999999999999999999943 4 6999999999877999999999999999
Q ss_pred EEeCCCeEEEEeCCCCCCccccccccCCCCCCcccCCCCCCccccCCCCCcCCcCCCCCceeecceeeEEecCCCccccc
Q 003907 448 IVSSKGTCHVFVLSPFGGDSGFQTLSSQGGDPYLFPVLSLPWWCTSSGISEQQCVLPPPPVTLSVVSRIKYSSFGWLNTV 527 (787)
Q Consensus 448 s~S~dgTVhIwdl~~~gg~~~~~~H~~~~~~~~~~~~~~~~~~~~~~~s~~q~~~~~p~~~~l~~v~~i~~~~~~w~~~v 527 (787)
++|+.+|||||.|+....+. ...|.+ ..+|.+.+
T Consensus 235 ~sS~TeTVHiFKL~~~~~~~----------------------------------~~~p~~------------~~~~~~~~ 268 (391)
T KOG2110|consen 235 ASSNTETVHIFKLEKVSNNP----------------------------------PESPTA------------GTSWFGKV 268 (391)
T ss_pred EecCCCeEEEEEecccccCC----------------------------------CCCCCC------------CCcccchh
Confidence 99999999999998642100 001111 24688888
Q ss_pred cccccccCCccccccceeeeecccCcc--ccccc--------cccccCccccEEEEcCCccEEEEecccCCCCCCCCCC
Q 003907 528 SNASASSMGKVFVPSGAVAAVFHNSIA--HSSQH--------VNSRTNSLEHLLVYTPSGYVVQHELLPSIGMGPSDDG 596 (787)
Q Consensus 528 ~~~~~~a~~~~~~p~~~v~~~f~~~~~--~~~~~--------~~~~~~~~~~LlV~s~~G~l~~y~l~p~~g~~~~~~~ 596 (787)
++++.+ |+|++ |+.+++++|. +++++ .+..+++.++++|++.|||+|.|+|+|++||||.+..
T Consensus 269 sk~~~s-----ylps~-V~~~~~~~R~FAt~~l~~s~~~~~~~l~~~~~~~~v~vas~dG~~y~y~l~~~~gGec~lik 341 (391)
T KOG2110|consen 269 SKAATS-----YLPSQ-VSSVLDQSRKFATAKLPESGRKNICSLSSIQKIPRVLVASYDGHLYSYRLPPKEGGECALIK 341 (391)
T ss_pred hhhhhh-----hcchh-hhhhhhhccceeEEEccCCCccceEEeeccCCCCEEEEEEcCCeEEEEEcCCCCCceeEEEE
Confidence 777666 99999 9999999987 44444 3557789999999999999999999999999999865
No 4
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=100.00 E-value=3.8e-38 Score=327.70 Aligned_cols=316 Identities=25% Similarity=0.322 Sum_probs=253.4
Q ss_pred CcEEEEEEeeccCCCCCCCeEEEEEecCcEEEEEccCCCceeEeee--eccCcEEEEEEecCCCCCCCCCCccccCcEEE
Q 003907 57 DQVTWAGFDRLEYGPSVFKQVLLLGYQNGFQVLDVEDASNFNELVS--KRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLL 134 (787)
Q Consensus 57 ~~v~wa~Fd~l~~~~~~~~~vL~lG~~~G~qVWdv~~~~~~~ells--~~dg~V~~v~~lP~P~~~~~~d~F~~srpLLa 134 (787)
-+.+-++|+| +..|+++|.++||+||++++ +.|..+ .+++.+..++|| |+.+ +||
T Consensus 6 ~~~lsvs~NQ-------D~ScFava~~~Gfriyn~~P---~ke~~~r~~~~~G~~~veML-----------fR~N--~la 62 (346)
T KOG2111|consen 6 PKTLSVSFNQ-------DHSCFAVATDTGFRIYNCDP---FKESASRQFIDGGFKIVEML-----------FRSN--YLA 62 (346)
T ss_pred CceeEEEEcc-------CCceEEEEecCceEEEecCc---hhhhhhhccccCchhhhhHh-----------hhhc--eEE
Confidence 3456699998 36799999999999999998 444433 345569999999 9998 999
Q ss_pred EEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCCcEEEEEecCCeEEEEeCCeEE
Q 003907 135 VVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRSSVCMVRCSPRIVAVGLATQIY 214 (787)
Q Consensus 135 vV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~v~tL~f~s~V~sV~~s~~~LaV~~~~~I~ 214 (787)
+|+|+. ++.++|++|.|||.....++.++.|.++|.+|++.+++|+|.++++|+
T Consensus 63 LVGGg~--------------------------~pky~pNkviIWDD~k~~~i~el~f~~~I~~V~l~r~riVvvl~~~I~ 116 (346)
T KOG2111|consen 63 LVGGGS--------------------------RPKYPPNKVIIWDDLKERCIIELSFNSEIKAVKLRRDRIVVVLENKIY 116 (346)
T ss_pred EecCCC--------------------------CCCCCCceEEEEecccCcEEEEEEeccceeeEEEcCCeEEEEecCeEE
Confidence 987532 124578999999999999999999999999999999999999999999
Q ss_pred EEECC-CCceeEEEEecCCcccCCCCccccccccceeEEcc----ceEEEecCCceecCcceeccccCCCCCcCCCcCCC
Q 003907 215 CFDAL-TLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP----RWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPG 289 (787)
Q Consensus 215 iwD~~-T~e~l~tl~t~p~p~~~~~~~~~~~~~~~~lAlsp----r~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~sp~ 289 (787)
+|... +.++++.+.+.++| .|.|++.| .+|||++.
T Consensus 117 VytF~~n~k~l~~~et~~NP-------------kGlC~~~~~~~k~~LafPg~--------------------------- 156 (346)
T KOG2111|consen 117 VYTFPDNPKLLHVIETRSNP-------------KGLCSLCPTSNKSLLAFPGF--------------------------- 156 (346)
T ss_pred EEEcCCChhheeeeecccCC-------------CceEeecCCCCceEEEcCCC---------------------------
Confidence 99977 88999999998887 35677765 45555542
Q ss_pred CCceeEeeehhhhhhhhcccceeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECCCCcE--EEEecc
Q 003907 290 GSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAI--ISQFKA 367 (787)
Q Consensus 290 ~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~--v~~~~a 367 (787)
..|.|+|-|+...+. ...+.|
T Consensus 157 ---------------------------------------------------------k~GqvQi~dL~~~~~~~p~~I~A 179 (346)
T KOG2111|consen 157 ---------------------------------------------------------KTGQVQIVDLASTKPNAPSIINA 179 (346)
T ss_pred ---------------------------------------------------------ccceEEEEEhhhcCcCCceEEEc
Confidence 236777777766554 467899
Q ss_pred CCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEE
Q 003907 368 HTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIA 447 (787)
Q Consensus 368 H~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~LA 447 (787)
|.++|.|++++-+|+++||||.+|+.|||||..+ | .+++++|||..++.|++|+||||+.|||
T Consensus 180 H~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~-------g----------~~l~E~RRG~d~A~iy~iaFSp~~s~La 242 (346)
T KOG2111|consen 180 HDSDIACVALNLQGTLVATASTKGTLIRIFDTED-------G----------TLLQELRRGVDRADIYCIAFSPNSSWLA 242 (346)
T ss_pred ccCceeEEEEcCCccEEEEeccCcEEEEEEEcCC-------C----------cEeeeeecCCchheEEEEEeCCCccEEE
Confidence 9999999999999999999999999999999865 4 6899999999999999999999999999
Q ss_pred EEeCCCeEEEEeCCCCCCccccccccCCCCCCcccCC-CCCCccccCCCCCcCCcCCCCCceeecceeeEEecCCCcccc
Q 003907 448 IVSSKGTCHVFVLSPFGGDSGFQTLSSQGGDPYLFPV-LSLPWWCTSSGISEQQCVLPPPPVTLSVVSRIKYSSFGWLNT 526 (787)
Q Consensus 448 s~S~dgTVhIwdl~~~gg~~~~~~H~~~~~~~~~~~~-~~~~~~~~~~~s~~q~~~~~p~~~~l~~v~~i~~~~~~w~~~ 526 (787)
++|++||+|||.+....- +.+.|+ .++.. .-||.|+.|+||.+|+.+|..+
T Consensus 243 vsSdKgTlHiF~l~~~~~--~~~~~S------Sl~~~~~~lpky~~S~wS~~~f~l~~~~-------------------- 294 (346)
T KOG2111|consen 243 VSSDKGTLHIFSLRDTEN--TEDESS------SLSFKRLVLPKYFSSEWSFAKFQLPQGT-------------------- 294 (346)
T ss_pred EEcCCCeEEEEEeecCCC--Cccccc------cccccccccchhcccceeEEEEEccCCC--------------------
Confidence 999999999999976321 112221 12222 4689999999999987776322
Q ss_pred ccccccccCCccccccceeeeecccCccccccccccccCccccEEEEcCCccEEEEecccCCCCCCCC
Q 003907 527 VSNASASSMGKVFVPSGAVAAVFHNSIAHSSQHVNSRTNSLEHLLVYTPSGYVVQHELLPSIGMGPSD 594 (787)
Q Consensus 527 v~~~~~~a~~~~~~p~~~v~~~f~~~~~~~~~~~~~~~~~~~~LlV~s~~G~l~~y~l~p~~g~~~~~ 594 (787)
. +..-|.+. ...+++..-||.-+.|.++|.+||+|..
T Consensus 295 ----------------~-~~~~fg~~--------------~nsvi~i~~Dgsy~k~~f~~~~~g~~~~ 331 (346)
T KOG2111|consen 295 ----------------Q-CIIAFGSE--------------TNTVIAICADGSYYKFKFDPKNGGESSR 331 (346)
T ss_pred ----------------c-EEEEecCC--------------CCeEEEEEeCCcEEEEEeccccccchhh
Confidence 1 22223322 1357888899999999999999999974
No 5
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=99.91 E-value=4.7e-23 Score=218.84 Aligned_cols=310 Identities=15% Similarity=0.152 Sum_probs=214.3
Q ss_pred CCCCCCCcEEEEEEeeccCCCCCCCeEEEEEecC-cEEEEEccCCCceeEeeeeccCcEEEEEEecCCCCCCCCCCcccc
Q 003907 51 ASEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQN-GFQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKL 129 (787)
Q Consensus 51 ~~~~~~~~v~wa~Fd~l~~~~~~~~~vL~lG~~~-G~qVWdv~~~~~~~ells~~dg~V~~v~~lP~P~~~~~~d~F~~s 129 (787)
..++|-+.|+.+.|-- ++..|++|..+ .+|+||++. ..-..++.+|..+|.+|.+.|+. +
T Consensus 110 S~~GH~e~Vl~~~fsp-------~g~~l~tGsGD~TvR~WD~~T-eTp~~t~KgH~~WVlcvawsPDg-----------k 170 (480)
T KOG0271|consen 110 SIAGHGEAVLSVQFSP-------TGSRLVTGSGDTTVRLWDLDT-ETPLFTCKGHKNWVLCVAWSPDG-----------K 170 (480)
T ss_pred ccCCCCCcEEEEEecC-------CCceEEecCCCceEEeeccCC-CCcceeecCCccEEEEEEECCCc-----------c
Confidence 4678999999999952 57889999876 599999965 44567888999999999999973 2
Q ss_pred CcEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeE-EEEEeCCC-cEEEEEecC-----
Q 003907 130 HPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCY-EHVLRFRS-SVCMVRCSP----- 202 (787)
Q Consensus 130 rpLLavV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~-v~tL~f~s-~V~sV~~s~----- 202 (787)
.||. |. .+++|++||.++|++ ...|..+. .|.++++-|
T Consensus 171 --~iAS--G~-------------------------------~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p 215 (480)
T KOG0271|consen 171 --KIAS--GS-------------------------------KDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVP 215 (480)
T ss_pred --hhhc--cc-------------------------------cCCeEEEecCCCCCcccccccCcccceeEEeecccccCC
Confidence 4543 21 236899999999875 45676554 799999866
Q ss_pred --CeEEEEe-CCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEcc-ceEEEecCCc--eecC--cceecc
Q 003907 203 --RIVAVGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP-RWLAYASNTL--LLSN--SGRLSP 274 (787)
Q Consensus 203 --~~LaV~~-~~~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~~~~~lAlsp-r~LAyas~~~--~l~~--~g~~s~ 274 (787)
++||.+. |+.|+|||+.-++++.++.+|.++ +..+-+|- .||+.++.+. .++. .|++ .
T Consensus 216 ~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~-------------VTCvrwGG~gliySgS~DrtIkvw~a~dG~~-~ 281 (480)
T KOG0271|consen 216 PCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTAS-------------VTCVRWGGEGLIYSGSQDRTIKVWRALDGKL-C 281 (480)
T ss_pred CccceecccCCCCEEEEEccCceEEEEeccCccc-------------eEEEEEcCCceEEecCCCceEEEEEccchhH-H
Confidence 6788765 567999999999999999999886 23455554 5555555442 2221 1211 1
Q ss_pred ccCCCCCcCCCcCCCCCceeEeee--hhhhhhhhcccc---------------eeecccccccCCCCCCCCcccCCcccc
Q 003907 275 QNLTPSGVSPSTSPGGSSLVARYA--MEHSKQFAAGLS---------------KTLSKYCQELLPDGSSSPVSPNSVWKV 337 (787)
Q Consensus 275 q~lt~~~~s~s~sp~~g~lva~~a--~d~sk~la~G~~---------------ktls~~~~~l~p~~s~~~~s~s~~~~~ 337 (787)
..|++. +.-+.++| .|.+ |-.|.. +.+.+|-.- ..+
T Consensus 282 r~lkGH----------ahwvN~lalsTdy~--LRtgaf~~t~~~~~~~se~~~~Al~rY~~~-~~~-------------- 334 (480)
T KOG0271|consen 282 RELKGH----------AHWVNHLALSTDYV--LRTGAFDHTGRKPKSFSEEQKKALERYEAV-LKD-------------- 334 (480)
T ss_pred Hhhccc----------chheeeeeccchhh--hhccccccccccCCChHHHHHHHHHHHHHh-hcc--------------
Confidence 111110 00001111 0000 000000 111222110 000
Q ss_pred ccccccccCCCceEEEEECC-CCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccC
Q 003907 338 GRHAGADMDNAGIVVVKDFV-TRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWN 416 (787)
Q Consensus 338 ~~~~~~s~~~dG~V~IwDl~-s~~~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~ 416 (787)
.+-...+++.|+++.+|+-. +.+++..+.+|+.-|+.+.|||||+++|+||- ++.||+||-.+ |
T Consensus 335 ~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSF-DkSVkLW~g~t-------G------- 399 (480)
T KOG0271|consen 335 SGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASF-DKSVKLWDGRT-------G------- 399 (480)
T ss_pred CcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeec-ccceeeeeCCC-------c-------
Confidence 00123467889999999965 45688899999999999999999999999999 56699999754 4
Q ss_pred CcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEeCCCCCCccccccccCC
Q 003907 417 SSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQTLSSQ 475 (787)
Q Consensus 417 ~s~~~l~~l~rG~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~~~gg~~~~~~H~~~ 475 (787)
+.+..| ||+ -+.|+.++||.|++.|+++|.|.|++||++.+.+-...+.+|...
T Consensus 400 ---k~lasf-RGH-v~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~DLpGh~DE 453 (480)
T KOG0271|consen 400 ---KFLASF-RGH-VAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQDLPGHADE 453 (480)
T ss_pred ---chhhhh-hhc-cceeEEEEeccCccEEEEcCCCceEEEEEeeeeeecccCCCCCce
Confidence 456666 463 467999999999999999999999999999998888888888543
No 6
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=99.91 E-value=3.5e-23 Score=222.36 Aligned_cols=278 Identities=18% Similarity=0.147 Sum_probs=212.9
Q ss_pred CCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCceeEeeeeccCcEEEEEEecCCCCCCCCCCccccCcE
Q 003907 54 DLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPF 132 (787)
Q Consensus 54 ~~~~~v~wa~Fd~l~~~~~~~~~vL~lG~~~G-~qVWdv~~~~~~~ells~~dg~V~~v~~lP~P~~~~~~d~F~~srpL 132 (787)
++...|..+.|-. +...|++|+-+| .+||++.. .+...+|.+|.+.|..+.|-|.- +.--
T Consensus 173 gd~rPis~~~fS~-------ds~~laT~swsG~~kvW~~~~-~~~~~~l~gH~~~v~~~~fhP~~-----------~~~~ 233 (459)
T KOG0272|consen 173 GDTRPISGCSFSR-------DSKHLATGSWSGLVKVWSVPQ-CNLLQTLRGHTSRVGAAVFHPVD-----------SDLN 233 (459)
T ss_pred cCCCcceeeEeec-------CCCeEEEeecCCceeEeecCC-cceeEEEeccccceeeEEEccCC-----------Cccc
Confidence 4556688888854 467999999998 79999965 47788899999999999999841 1113
Q ss_pred EEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCC-CcEEEEEecC--CeEEEE-
Q 003907 133 LLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFR-SSVCMVRCSP--RIVAVG- 208 (787)
Q Consensus 133 LavV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~v~tL~f~-s~V~sV~~s~--~~LaV~- 208 (787)
||.++ .+++|++|++.+-+.+..|+.+ .+|..|+|+| ++|+++
T Consensus 234 lat~s---------------------------------~Dgtvklw~~~~e~~l~~l~gH~~RVs~VafHPsG~~L~Tas 280 (459)
T KOG0272|consen 234 LATAS---------------------------------ADGTVKLWKLSQETPLQDLEGHLARVSRVAFHPSGKFLGTAS 280 (459)
T ss_pred eeeec---------------------------------cCCceeeeccCCCcchhhhhcchhhheeeeecCCCceeeecc
Confidence 44432 2468999999998999999876 5999999988 788875
Q ss_pred eCCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEcc--ceEEEecCCceecCcceeccccCCCCCcCCCc
Q 003907 209 LATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP--RWLAYASNTLLLSNSGRLSPQNLTPSGVSPST 286 (787)
Q Consensus 209 ~~~~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~~~~~lAlsp--r~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~ 286 (787)
+|..-++||+.|.+.+...++|..+ +-.+|+.| ..+|+++.+. .|++ |+..++.++
T Consensus 281 fD~tWRlWD~~tk~ElL~QEGHs~~-------------v~~iaf~~DGSL~~tGGlD~----~~Rv-WDlRtgr~i---- 338 (459)
T KOG0272|consen 281 FDSTWRLWDLETKSELLLQEGHSKG-------------VFSIAFQPDGSLAATGGLDS----LGRV-WDLRTGRCI---- 338 (459)
T ss_pred cccchhhcccccchhhHhhcccccc-------------cceeEecCCCceeeccCccc----hhhe-eecccCcEE----
Confidence 5678999999999998888888763 34577777 6677777652 2444 776664221
Q ss_pred CCCCCceeEeeehhhhhhhhcccceeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECCCCcEEEEec
Q 003907 287 SPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFK 366 (787)
Q Consensus 287 sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~v~~~~ 366 (787)
- .|.++..+ ..+..|.+++..+++++.|++++|||++..+.+.+|.
T Consensus 339 ----m--------------------~L~gH~k~----------I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ip 384 (459)
T KOG0272|consen 339 ----M--------------------FLAGHIKE----------ILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIP 384 (459)
T ss_pred ----E--------------------Eecccccc----------eeeEeECCCceEEeecCCCCcEEEeeecccccceecc
Confidence 0 11111111 1223455667778899999999999999999999999
Q ss_pred cCCCCeEEEEECC-CCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCE
Q 003907 367 AHTSPISALCFDP-SGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQW 445 (787)
Q Consensus 367 aH~~pIsaLaFSp-dG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~ 445 (787)
+|..-|+.++|+| .|.+|+|||.|.+ ++||.... + .++..|. |+ ...|.++..|+||++
T Consensus 385 AH~nlVS~Vk~~p~~g~fL~TasyD~t-~kiWs~~~-------~----------~~~ksLa-GH-e~kV~s~Dis~d~~~ 444 (459)
T KOG0272|consen 385 AHSNLVSQVKYSPQEGYFLVTASYDNT-VKIWSTRT-------W----------SPLKSLA-GH-EGKVISLDISPDSQA 444 (459)
T ss_pred cccchhhheEecccCCeEEEEcccCcc-eeeecCCC-------c----------ccchhhc-CC-ccceEEEEeccCCce
Confidence 9999999999999 7999999999665 99998643 1 3555554 54 357999999999999
Q ss_pred EEEEeCCCeEEEEe
Q 003907 446 IAIVSSKGTCHVFV 459 (787)
Q Consensus 446 LAs~S~dgTVhIwd 459 (787)
|++++.|.|+++|.
T Consensus 445 i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 445 IATSSFDRTIKLWR 458 (459)
T ss_pred EEEeccCceeeecc
Confidence 99999999999995
No 7
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=99.90 E-value=6e-23 Score=234.36 Aligned_cols=230 Identities=19% Similarity=0.252 Sum_probs=172.7
Q ss_pred CCeEEEEEecCc-EEEEEccCC------------------------------CceeEeeeeccCcEEEEEEecCCCCCCC
Q 003907 74 FKQVLLLGYQNG-FQVLDVEDA------------------------------SNFNELVSKRDGPVSFLQMQPFPVKDDG 122 (787)
Q Consensus 74 ~~~vL~lG~~~G-~qVWdv~~~------------------------------~~~~ells~~dg~V~~v~~lP~P~~~~~ 122 (787)
+.+.|++|..+- ++||.+.+. +...+.+-+|.|||..+.+.|+
T Consensus 389 dssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVyg~sFsPd------ 462 (707)
T KOG0263|consen 389 DSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVYGCSFSPD------ 462 (707)
T ss_pred CcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCceeeeeeccc------
Confidence 466899998874 899998741 1123335678899999998874
Q ss_pred CCCccccCcEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCC-CcEEEEEec
Q 003907 123 CEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFR-SSVCMVRCS 201 (787)
Q Consensus 123 ~d~F~~srpLLavV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~v~tL~f~-s~V~sV~~s 201 (787)
+-+|+.++ + +.+||+|++.+..++..++.+ .+|++|+|+
T Consensus 463 -------~rfLlScS--E-------------------------------D~svRLWsl~t~s~~V~y~GH~~PVwdV~F~ 502 (707)
T KOG0263|consen 463 -------RRFLLSCS--E-------------------------------DSSVRLWSLDTWSCLVIYKGHLAPVWDVQFA 502 (707)
T ss_pred -------ccceeecc--C-------------------------------CcceeeeecccceeEEEecCCCcceeeEEec
Confidence 23554422 1 268999999999999999876 499999999
Q ss_pred C--CeEEEEe-CCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCcceeccccCC
Q 003907 202 P--RIVAVGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLT 278 (787)
Q Consensus 202 ~--~~LaV~~-~~~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~~~~~lAlspr~LAyas~~~~l~~~g~~s~q~lt 278 (787)
| .++|++. |.+..+|.....+.+..+.+|-. ..+.++|+|+
T Consensus 503 P~GyYFatas~D~tArLWs~d~~~PlRifaghls-------------DV~cv~FHPN----------------------- 546 (707)
T KOG0263|consen 503 PRGYYFATASHDQTARLWSTDHNKPLRIFAGHLS-------------DVDCVSFHPN----------------------- 546 (707)
T ss_pred CCceEEEecCCCceeeeeecccCCchhhhccccc-------------ccceEEECCc-----------------------
Confidence 9 4677655 45689998766555544444332 1233444430
Q ss_pred CCCcCCCcCCCCCceeEeeehhhhhhhhcccceeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECCC
Q 003907 279 PSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVT 358 (787)
Q Consensus 279 ~~~~s~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s 358 (787)
...+++++.|.+|++||+.+
T Consensus 547 ------------------------------------------------------------s~Y~aTGSsD~tVRlWDv~~ 566 (707)
T KOG0263|consen 547 ------------------------------------------------------------SNYVATGSSDRTVRLWDVST 566 (707)
T ss_pred ------------------------------------------------------------ccccccCCCCceEEEEEcCC
Confidence 01123445688999999999
Q ss_pred CcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEE
Q 003907 359 RAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDIC 438 (787)
Q Consensus 359 ~~~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~sla 438 (787)
+..++.|.+|+++|.+|+|||+|++||+|++||. |+|||+.. | ..+..+ +|+ .+.|++|+
T Consensus 567 G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~-I~iWDl~~-------~----------~~v~~l-~~H-t~ti~Sls 626 (707)
T KOG0263|consen 567 GNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGL-IKIWDLAN-------G----------SLVKQL-KGH-TGTIYSLS 626 (707)
T ss_pred CcEEEEecCCCCceEEEEEcCCCceEeecccCCc-EEEEEcCC-------C----------cchhhh-hcc-cCceeEEE
Confidence 9999999999999999999999999999999775 99999953 2 244444 455 56899999
Q ss_pred EccCCCEEEEEeCCCeEEEEeCCCCCC
Q 003907 439 FSHYSQWIAIVSSKGTCHVFVLSPFGG 465 (787)
Q Consensus 439 FSpDg~~LAs~S~dgTVhIwdl~~~gg 465 (787)
||.||..||+++.|.+|++||+...-+
T Consensus 627 FS~dg~vLasgg~DnsV~lWD~~~~~~ 653 (707)
T KOG0263|consen 627 FSRDGNVLASGGADNSVRLWDLTKVIE 653 (707)
T ss_pred EecCCCEEEecCCCCeEEEEEchhhcc
Confidence 999999999999999999999976433
No 8
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=99.89 E-value=4.4e-22 Score=211.49 Aligned_cols=308 Identities=13% Similarity=0.103 Sum_probs=207.6
Q ss_pred CCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCceeEeeeeccCcEEEEEEecCCCCCCCCCCccccCcEE
Q 003907 55 LKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFL 133 (787)
Q Consensus 55 ~~~~v~wa~Fd~l~~~~~~~~~vL~lG~~~G-~qVWdv~~~~~~~ells~~dg~V~~v~~lP~P~~~~~~d~F~~srpLL 133 (787)
|+.-|+.+.+ +.+++.|+.|..+| |++||-...+...+.|.+|..+|..+.+.|--... +.| +|
T Consensus 156 H~~WVlcvaw-------sPDgk~iASG~~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p-------~~r-~l 220 (480)
T KOG0271|consen 156 HKNWVLCVAW-------SPDGKKIASGSKDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVP-------PCR-RL 220 (480)
T ss_pred CccEEEEEEE-------CCCcchhhccccCCeEEEecCCCCCcccccccCcccceeEEeecccccCC-------Ccc-ce
Confidence 4445555554 34689999999988 99999887777888999999999999999854322 223 45
Q ss_pred EEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCC-cEEEEEecC-CeEEEEe-C
Q 003907 134 LVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRS-SVCMVRCSP-RIVAVGL-A 210 (787)
Q Consensus 134 avV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~v~tL~f~s-~V~sV~~s~-~~LaV~~-~ 210 (787)
|..+ .++.|+|||++.++++..+..+. +|.+|++-. .+|..+. |
T Consensus 221 as~s---------------------------------kDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~gliySgS~D 267 (480)
T KOG0271|consen 221 ASSS---------------------------------KDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGEGLIYSGSQD 267 (480)
T ss_pred eccc---------------------------------CCCCEEEEEccCceEEEEeccCccceEEEEEcCCceEEecCCC
Confidence 4311 24689999999999999998764 999999985 6777765 5
Q ss_pred CeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEccceE----EEec--CCceec-CcceeccccCCCCCcC
Q 003907 211 TQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWL----AYAS--NTLLLS-NSGRLSPQNLTPSGVS 283 (787)
Q Consensus 211 ~~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~~~~~lAlspr~L----Ayas--~~~~l~-~~g~~s~q~lt~~~~s 283 (787)
.+|++|++.++++..++.+|..+ .+.+|++..|. ||-. ..+... .........+.. +
T Consensus 268 rtIkvw~a~dG~~~r~lkGHahw-------------vN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~-~-- 331 (480)
T KOG0271|consen 268 RTIKVWRALDGKLCRELKGHAHW-------------VNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEA-V-- 331 (480)
T ss_pred ceEEEEEccchhHHHhhcccchh-------------eeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHH-h--
Confidence 57999999999999999988764 56788876332 2211 000000 000000000000 0
Q ss_pred CCcCCCCCceeEeeehhhhhhhhcccc-----eeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECCC
Q 003907 284 PSTSPGGSSLVARYAMEHSKQFAAGLS-----KTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVT 358 (787)
Q Consensus 284 ~s~sp~~g~lva~~a~d~sk~la~G~~-----ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s 358 (787)
-+.++...+...-|...-+..... ..++++.. -.+..+|+|+.+. +++++.|..|++||-.+
T Consensus 332 ---~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~------lVn~V~fSPd~r~----IASaSFDkSVkLW~g~t 398 (480)
T KOG0271|consen 332 ---LKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQA------LVNHVSFSPDGRY----IASASFDKSVKLWDGRT 398 (480)
T ss_pred ---hccCcceeEEecCCceEEEecccccccchhhhhchhh------heeeEEECCCccE----EEEeecccceeeeeCCC
Confidence 000000001111110000000000 01122211 1345667776665 56889999999999999
Q ss_pred CcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEE
Q 003907 359 RAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDIC 438 (787)
Q Consensus 359 ~~~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~sla 438 (787)
|+.+++|++|-.+|.-++|+.|.++|+++|. +++++|||++.- ...++| -| +...|+++.
T Consensus 399 Gk~lasfRGHv~~VYqvawsaDsRLlVS~Sk-DsTLKvw~V~tk-----------------Kl~~DL-pG-h~DEVf~vD 458 (480)
T KOG0271|consen 399 GKFLASFRGHVAAVYQVAWSADSRLLVSGSK-DSTLKVWDVRTK-----------------KLKQDL-PG-HADEVFAVD 458 (480)
T ss_pred cchhhhhhhccceeEEEEeccCccEEEEcCC-CceEEEEEeeee-----------------eecccC-CC-CCceEEEEE
Confidence 9999999999999999999999999999999 566999999641 222344 34 346899999
Q ss_pred EccCCCEEEEEeCCCeEEEEe
Q 003907 439 FSHYSQWIAIVSSKGTCHVFV 459 (787)
Q Consensus 439 FSpDg~~LAs~S~dgTVhIwd 459 (787)
|||||+.+|+++.|..++||.
T Consensus 459 wspDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 459 WSPDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred ecCCCceeecCCCceEEEeec
Confidence 999999999999999999995
No 9
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=99.87 E-value=1.8e-20 Score=190.43 Aligned_cols=269 Identities=19% Similarity=0.227 Sum_probs=178.5
Q ss_pred EEEEEecCcEEEEEccCCCceeEeeeeccCcEEEEEEecCCCCCCC----C----CCccccC-cEEEEEEcCCCCCCCCC
Q 003907 77 VLLLGYQNGFQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDG----C----EGFRKLH-PFLLVVAGEDTNTLAPG 147 (787)
Q Consensus 77 vL~lG~~~G~qVWdv~~~~~~~ells~~dg~V~~v~~lP~P~~~~~----~----d~F~~sr-pLLavV~~d~~~~~~~~ 147 (787)
+...||+..||+|... +|.|..++...|+.|..+++.|+...-.. . |.=..+. |+.-..+. +
T Consensus 13 LvsA~YDhTIRfWqa~-tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~qhvRlyD~~S~np~Pv~t~e~h--------~ 83 (311)
T KOG0315|consen 13 LVSAGYDHTIRFWQAL-TGICSRTIQHPDSQVNRLEITPDKKDLAAAGNQHVRLYDLNSNNPNPVATFEGH--------T 83 (311)
T ss_pred EEeccCcceeeeeehh-cCeEEEEEecCccceeeEEEcCCcchhhhccCCeeEEEEccCCCCCceeEEecc--------C
Confidence 3345778899999994 69999999999999999999986321100 0 1111110 21111000 0
Q ss_pred CCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCCcEEEEEecC--CeEEEEe-CCeEEEEECCCCcee
Q 003907 148 QNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRSSVCMVRCSP--RIVAVGL-ATQIYCFDALTLENK 224 (787)
Q Consensus 148 ~~~~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~v~tL~f~s~V~sV~~s~--~~LaV~~-~~~I~iwD~~T~e~l 224 (787)
.+...+|.-.+|.|....+ .++++||||++.-.+-+.+++.++|..|-.+| .-|+++. .+.|++||+.+-.+-
T Consensus 84 kNVtaVgF~~dgrWMyTgs----eDgt~kIWdlR~~~~qR~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~ 159 (311)
T KOG0315|consen 84 KNVTAVGFQCDGRWMYTGS----EDGTVKIWDLRSLSCQRNYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCT 159 (311)
T ss_pred CceEEEEEeecCeEEEecC----CCceEEEEeccCcccchhccCCCCcceEEecCCcceEEeecCCCcEEEEEccCCccc
Confidence 1111222236888873322 36899999999988888999999999999988 3566665 467999998765433
Q ss_pred EEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCcceeccccCCCCCcCCCcCCCCCceeEeeehhhhhh
Q 003907 225 FSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQ 304 (787)
Q Consensus 225 ~tl~t~p~p~~~~~~~~~~~~~~~~lAlspr~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~sp~~g~lva~~a~d~sk~ 304 (787)
+.+ .|+. ......+++.| + +.-+
T Consensus 160 ~~l----iPe~--------~~~i~sl~v~~-------d---------------------------gsml----------- 182 (311)
T KOG0315|consen 160 HEL----IPED--------DTSIQSLTVMP-------D---------------------------GSML----------- 182 (311)
T ss_pred ccc----CCCC--------CcceeeEEEcC-------C---------------------------CcEE-----------
Confidence 322 2210 00011222211 1 0101
Q ss_pred hhcccceeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECCCC------cEEEEeccCCCCeEEEEEC
Q 003907 305 FAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTR------AIISQFKAHTSPISALCFD 378 (787)
Q Consensus 305 la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~------~~v~~~~aH~~pIsaLaFS 378 (787)
+.+.+.|.+.+|++-+. +++.+|++|++-|...-||
T Consensus 183 --------------------------------------~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lS 224 (311)
T KOG0315|consen 183 --------------------------------------AAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLS 224 (311)
T ss_pred --------------------------------------EEecCCccEEEEEccCCCccccceEhhheecccceEEEEEEC
Confidence 11234678888887653 4677899999999999999
Q ss_pred CCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEE-EEEecccccccEEEEEEccCCCEEEEEeCCCeEEE
Q 003907 379 PSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHL-YKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHV 457 (787)
Q Consensus 379 pdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l-~~l~rG~~~a~I~slaFSpDg~~LAs~S~dgTVhI 457 (787)
||+++|||+|. +++++||++... -++ ..+ .| ++..+++++||.||+||++++.|+++|+
T Consensus 225 Pd~k~lat~ss-dktv~iwn~~~~-----------------~kle~~l-~g-h~rWvWdc~FS~dg~YlvTassd~~~rl 284 (311)
T KOG0315|consen 225 PDVKYLATCSS-DKTVKIWNTDDF-----------------FKLELVL-TG-HQRWVWDCAFSADGEYLVTASSDHTARL 284 (311)
T ss_pred CCCcEEEeecC-CceEEEEecCCc-----------------eeeEEEe-ec-CCceEEeeeeccCccEEEecCCCCceee
Confidence 99999999999 556999998431 111 122 23 2357999999999999999999999999
Q ss_pred EeCCCCCCcccccccc
Q 003907 458 FVLSPFGGDSGFQTLS 473 (787)
Q Consensus 458 wdl~~~gg~~~~~~H~ 473 (787)
|++...+......+|-
T Consensus 285 W~~~~~k~v~qy~gh~ 300 (311)
T KOG0315|consen 285 WDLSAGKEVRQYQGHH 300 (311)
T ss_pred cccccCceeeecCCcc
Confidence 9998866655666663
No 10
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=99.85 E-value=2.2e-20 Score=200.88 Aligned_cols=227 Identities=16% Similarity=0.128 Sum_probs=173.4
Q ss_pred CEEEEEECCCCeEEEEEeCC-CcEEEEEecCC----eEEEE-eCCeEEEEECCCCceeEEEEecCCcccCCCCccccccc
Q 003907 173 TAVRFYSFQSHCYEHVLRFR-SSVCMVRCSPR----IVAVG-LATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVG 246 (787)
Q Consensus 173 ~tVrlWdlktg~~v~tL~f~-s~V~sV~~s~~----~LaV~-~~~~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~~ 246 (787)
+.++||+..+.+.+++|..+ +.|-++.|.|. -||+| .|+.+++|++.+-+.+..|.+|...
T Consensus 197 G~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~l~gH~~R------------- 263 (459)
T KOG0272|consen 197 GLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQDLEGHLAR------------- 263 (459)
T ss_pred CceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCcchhhhhcchhh-------------
Confidence 68999999999999999876 58999999883 56664 5678999999988888999888753
Q ss_pred cceeEEcc--ceEEEecCCceecCcceeccccCCCCCcCCCcCCCCCceeEeeehhhhhhhhcccceeecccccccCCCC
Q 003907 247 YGPMAVGP--RWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDG 324 (787)
Q Consensus 247 ~~~lAlsp--r~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~ 324 (787)
+..++|.| ++|+++..+. .-..|+.-+.. ++ ++..|
T Consensus 264 Vs~VafHPsG~~L~TasfD~-----tWRlWD~~tk~-----------------------El--------------L~QEG 301 (459)
T KOG0272|consen 264 VSRVAFHPSGKFLGTASFDS-----TWRLWDLETKS-----------------------EL--------------LLQEG 301 (459)
T ss_pred heeeeecCCCceeeeccccc-----chhhcccccch-----------------------hh--------------Hhhcc
Confidence 35688988 9999988652 11124432210 00 01111
Q ss_pred ---CCCCcccCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCC
Q 003907 325 ---SSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMP 401 (787)
Q Consensus 325 ---s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~ 401 (787)
....+++.++ +...++++.|..-+|||+++++.+..|.+|..+|..|+|||+|..|||||.|++ +||||++-
T Consensus 302 Hs~~v~~iaf~~D----GSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt-~kVWDLR~ 376 (459)
T KOG0272|consen 302 HSKGVFSIAFQPD----GSLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNT-CKVWDLRM 376 (459)
T ss_pred cccccceeEecCC----CceeeccCccchhheeecccCcEEEEecccccceeeEeECCCceEEeecCCCCc-EEEeeecc
Confidence 1222333333 333457888999999999999999999999999999999999999999999665 99999963
Q ss_pred CcccCCCCCCccccCCcceEEEEEecccccccEEEEEEcc-CCCEEEEEeCCCeEEEEeCCCCCCccccccccCCCCC
Q 003907 402 SCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSH-YSQWIAIVSSKGTCHVFVLSPFGGDSGFQTLSSQGGD 478 (787)
Q Consensus 402 ~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSp-Dg~~LAs~S~dgTVhIwdl~~~gg~~~~~~H~~~~~~ 478 (787)
. ..+|..- + |...|..+.|+| -|++|+++|.|+|++||.-........+.+|...+..
T Consensus 377 r-----------------~~ly~ip-A-H~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~s 435 (459)
T KOG0272|consen 377 R-----------------SELYTIP-A-HSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEGKVIS 435 (459)
T ss_pred c-----------------ccceecc-c-ccchhhheEecccCCeEEEEcccCcceeeecCCCcccchhhcCCccceEE
Confidence 1 3466654 2 445799999999 6899999999999999998888778889999765433
No 11
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=99.85 E-value=4.6e-19 Score=192.83 Aligned_cols=280 Identities=19% Similarity=0.254 Sum_probs=203.8
Q ss_pred CCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCceeEeeeeccCcEEEEEEecCCCCCCCCCCccccCcEEE
Q 003907 56 KDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLL 134 (787)
Q Consensus 56 ~~~v~wa~Fd~l~~~~~~~~~vL~lG~~~G-~qVWdv~~~~~~~ells~~dg~V~~v~~lP~P~~~~~~d~F~~srpLLa 134 (787)
..+|+...++. ++..|++|.-+| ++||+. .|++...|..|.|||..|++... ..+|+
T Consensus 235 nkdVT~L~Wn~-------~G~~LatG~~~G~~riw~~--~G~l~~tl~~HkgPI~slKWnk~-------------G~yil 292 (524)
T KOG0273|consen 235 NKDVTSLDWNN-------DGTLLATGSEDGEARIWNK--DGNLISTLGQHKGPIFSLKWNKK-------------GTYIL 292 (524)
T ss_pred cCCcceEEecC-------CCCeEEEeecCcEEEEEec--CchhhhhhhccCCceEEEEEcCC-------------CCEEE
Confidence 34566666653 488999999999 699997 47788889999999999998842 23554
Q ss_pred EEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCCcE-EEEEecC-CeEEE-EeCC
Q 003907 135 VVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRSSV-CMVRCSP-RIVAV-GLAT 211 (787)
Q Consensus 135 vV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~v~tL~f~s~V-~sV~~s~-~~LaV-~~~~ 211 (787)
. ++ .++++.+||..+|+.-..+.|++.. ++|.+-. .-+|+ +.+.
T Consensus 293 S--~~-------------------------------vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~~~F~ts~td~ 339 (524)
T KOG0273|consen 293 S--GG-------------------------------VDGTTILWDAHTGTVKQQFEFHSAPALDVDWQSNDEFATSSTDG 339 (524)
T ss_pred e--cc-------------------------------CCccEEEEeccCceEEEeeeeccCCccceEEecCceEeecCCCc
Confidence 3 21 2478999999999999999999876 8899854 45555 4567
Q ss_pred eEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEcc--ceEEEecCCc--eecCccee-ccccCCCCCcCCCc
Q 003907 212 QIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP--RWLAYASNTL--LLSNSGRL-SPQNLTPSGVSPST 286 (787)
Q Consensus 212 ~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~~~~~lAlsp--r~LAyas~~~--~l~~~g~~-s~q~lt~~~~s~s~ 286 (787)
.|++|.+.--....++.+|.++ .+.+-+.| ..||.++++. .+|+.+.- +...+...
T Consensus 340 ~i~V~kv~~~~P~~t~~GH~g~-------------V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~H------ 400 (524)
T KOG0273|consen 340 CIHVCKVGEDRPVKTFIGHHGE-------------VNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAH------ 400 (524)
T ss_pred eEEEEEecCCCcceeeecccCc-------------eEEEEECCCCceEEEecCCCeeEeeecCCCcchhhhhhh------
Confidence 8999998887788888888775 45677777 7899988763 44443211 00000000
Q ss_pred CCCCCceeEeeehhhhhhhhcccceeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECCCCcEEEEec
Q 003907 287 SPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFK 366 (787)
Q Consensus 287 sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~v~~~~ 366 (787)
+|+ + |.-...|.+-. -.++ ..+.+++.+..|++|++||+..+.+++.|.
T Consensus 401 ---------------ske----i------~t~~wsp~g~v---~~n~---~~~~~l~sas~dstV~lwdv~~gv~i~~f~ 449 (524)
T KOG0273|consen 401 ---------------SKE----I------YTIKWSPTGPV---TSNP---NMNLMLASASFDSTVKLWDVESGVPIHTLM 449 (524)
T ss_pred ---------------ccc----e------eeEeecCCCCc---cCCC---cCCceEEEeecCCeEEEEEccCCceeEeec
Confidence 000 0 00011121110 0111 122345678899999999999999999999
Q ss_pred cCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEE
Q 003907 367 AHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWI 446 (787)
Q Consensus 367 aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~L 446 (787)
.|+.||.+|+|||+|++||+||.||. |+||+++. + .+++-.+|. ..|..++|+.+|.+|
T Consensus 450 kH~~pVysvafS~~g~ylAsGs~dg~-V~iws~~~-------~-----------~l~~s~~~~--~~Ifel~Wn~~G~kl 508 (524)
T KOG0273|consen 450 KHQEPVYSVAFSPNGRYLASGSLDGC-VHIWSTKT-------G-----------KLVKSYQGT--GGIFELCWNAAGDKL 508 (524)
T ss_pred cCCCceEEEEecCCCcEEEecCCCCe-eEeccccc-------h-----------heeEeecCC--CeEEEEEEcCCCCEE
Confidence 99999999999999999999999665 99999864 2 455555553 459999999999999
Q ss_pred EEEeCCCeEEEEeCC
Q 003907 447 AIVSSKGTCHVFVLS 461 (787)
Q Consensus 447 As~S~dgTVhIwdl~ 461 (787)
+++-.|+.+.+-|+.
T Consensus 509 ~~~~sd~~vcvldlr 523 (524)
T KOG0273|consen 509 GACASDGSVCVLDLR 523 (524)
T ss_pred EEEecCCCceEEEec
Confidence 999999999998874
No 12
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.85 E-value=5.4e-18 Score=172.22 Aligned_cols=278 Identities=19% Similarity=0.244 Sum_probs=192.9
Q ss_pred CCCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCceeEeeeeccCcEEEEEEecCCCCCCCCCCccccC
Q 003907 52 SEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLH 130 (787)
Q Consensus 52 ~~~~~~~v~wa~Fd~l~~~~~~~~~vL~lG~~~G-~qVWdv~~~~~~~ells~~dg~V~~v~~lP~P~~~~~~d~F~~sr 130 (787)
..+|++.|..+.|+. .++.|++|..+| +++||++. ++....+..|..++..+.+.|+.
T Consensus 5 ~~~h~~~i~~~~~~~-------~~~~l~~~~~~g~i~i~~~~~-~~~~~~~~~~~~~i~~~~~~~~~------------- 63 (289)
T cd00200 5 LKGHTGGVTCVAFSP-------DGKLLATGSGDGTIKVWDLET-GELLRTLKGHTGPVRDVAASADG------------- 63 (289)
T ss_pred hcccCCCEEEEEEcC-------CCCEEEEeecCcEEEEEEeeC-CCcEEEEecCCcceeEEEECCCC-------------
Confidence 346889999999974 256788887655 99999965 44556677788889888888631
Q ss_pred cEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCC-cEEEEEecC--CeEEE
Q 003907 131 PFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRS-SVCMVRCSP--RIVAV 207 (787)
Q Consensus 131 pLLavV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~v~tL~f~s-~V~sV~~s~--~~LaV 207 (787)
.+|++++ . ++.|++||+.+++.+..+..+. .|..+.+++ +++++
T Consensus 64 ~~l~~~~-~--------------------------------~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 110 (289)
T cd00200 64 TYLASGS-S--------------------------------DKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSS 110 (289)
T ss_pred CEEEEEc-C--------------------------------CCeEEEEEcCcccceEEEeccCCcEEEEEEcCCCCEEEE
Confidence 2554422 1 2589999999988888887554 899999988 67777
Q ss_pred Ee-CCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEcc--ceEEEecCCceecCcceeccccCCCCCcCC
Q 003907 208 GL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP--RWLAYASNTLLLSNSGRLSPQNLTPSGVSP 284 (787)
Q Consensus 208 ~~-~~~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~~~~~lAlsp--r~LAyas~~~~l~~~g~~s~q~lt~~~~s~ 284 (787)
+. ++.|++||+.+++....+..+..+ ...++++| ++|+.+..+.. ...|+..+.
T Consensus 111 ~~~~~~i~~~~~~~~~~~~~~~~~~~~-------------i~~~~~~~~~~~l~~~~~~~~-----i~i~d~~~~----- 167 (289)
T cd00200 111 SSRDKTIKVWDVETGKCLTTLRGHTDW-------------VNSVAFSPDGTFVASSSQDGT-----IKLWDLRTG----- 167 (289)
T ss_pred ecCCCeEEEEECCCcEEEEEeccCCCc-------------EEEEEEcCcCCEEEEEcCCCc-----EEEEEcccc-----
Confidence 77 778999999988887777654432 34577777 66666652211 011221110
Q ss_pred CcCCCCCceeEeeehhhhhhhhcccceeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECCCCcEEEE
Q 003907 285 STSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQ 364 (787)
Q Consensus 285 s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~v~~ 364 (787)
... +.+.. ..+....+.++++.+ .+..+..+|.|++||+.+++.+..
T Consensus 168 -------~~~----------------~~~~~------~~~~i~~~~~~~~~~----~l~~~~~~~~i~i~d~~~~~~~~~ 214 (289)
T cd00200 168 -------KCV----------------ATLTG------HTGEVNSVAFSPDGE----KLLSSSSDGTIKLWDLSTGKCLGT 214 (289)
T ss_pred -------ccc----------------eeEec------CccccceEEECCCcC----EEEEecCCCcEEEEECCCCceecc
Confidence 000 00000 000111122222221 233455599999999999999999
Q ss_pred eccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCC
Q 003907 365 FKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQ 444 (787)
Q Consensus 365 ~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~ 444 (787)
+..|..+|.+++|+|++.++++++.+|. |++||+.. + ..+..+. + +...|.+++|+|+++
T Consensus 215 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~-i~i~~~~~-------~----------~~~~~~~-~-~~~~i~~~~~~~~~~ 274 (289)
T cd00200 215 LRGHENGVNSVAFSPDGYLLASGSEDGT-IRVWDLRT-------G----------ECVQTLS-G-HTNSVTSLAWSPDGK 274 (289)
T ss_pred hhhcCCceEEEEEcCCCcEEEEEcCCCc-EEEEEcCC-------c----------eeEEEcc-c-cCCcEEEEEECCCCC
Confidence 9999999999999999999999987675 99999853 2 3444444 2 345699999999999
Q ss_pred EEEEEeCCCeEEEEe
Q 003907 445 WIAIVSSKGTCHVFV 459 (787)
Q Consensus 445 ~LAs~S~dgTVhIwd 459 (787)
+|++++.|++++||+
T Consensus 275 ~l~~~~~d~~i~iw~ 289 (289)
T cd00200 275 RLASGSADGTIRIWD 289 (289)
T ss_pred EEEEecCCCeEEecC
Confidence 999999999999996
No 13
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=99.82 E-value=4e-18 Score=176.81 Aligned_cols=258 Identities=13% Similarity=0.084 Sum_probs=189.1
Q ss_pred CCCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCceeEeeeeccCcEEEEEEecCCCCCCCCCCccccC
Q 003907 52 SEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLH 130 (787)
Q Consensus 52 ~~~~~~~v~wa~Fd~l~~~~~~~~~vL~lG~~~G-~qVWdv~~~~~~~ells~~dg~V~~v~~lP~P~~~~~~d~F~~sr 130 (787)
.-+|..+|+...|-. +.+.|+.++++| +-|||.-.+ +....+..+..+|-.+++.|. .
T Consensus 51 LkGH~~Ki~~~~ws~-------Dsr~ivSaSqDGklIvWDs~Tt-nK~haipl~s~WVMtCA~sPS-------------g 109 (343)
T KOG0286|consen 51 LKGHLNKIYAMDWST-------DSRRIVSASQDGKLIVWDSFTT-NKVHAIPLPSSWVMTCAYSPS-------------G 109 (343)
T ss_pred ecccccceeeeEecC-------CcCeEEeeccCCeEEEEEcccc-cceeEEecCceeEEEEEECCC-------------C
Confidence 467788888777753 467899999998 799998654 445667778889999998874 2
Q ss_pred cEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCC------eEEEEEeCC-CcEEEEEecC-
Q 003907 131 PFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSH------CYEHVLRFR-SSVCMVRCSP- 202 (787)
Q Consensus 131 pLLavV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg------~~v~tL~f~-s~V~sV~~s~- 202 (787)
.++| +|+ .++...||++++. ...++|..+ +-+..++|-+
T Consensus 110 ~~VA--cGG-------------------------------LdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD 156 (343)
T KOG0286|consen 110 NFVA--CGG-------------------------------LDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDD 156 (343)
T ss_pred CeEE--ecC-------------------------------cCceeEEEecccccccccceeeeeecCccceeEEEEEcCC
Confidence 3553 221 1368899999865 234455544 4677777754
Q ss_pred -CeEEEEeCCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCcceeccccCCCCC
Q 003907 203 -RIVAVGLATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSG 281 (787)
Q Consensus 203 -~~LaV~~~~~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~~~~~lAlspr~LAyas~~~~l~~~g~~s~q~lt~~~ 281 (787)
++|..+.+.+..+||+.+++....+.+|..- .++| +.++++
T Consensus 157 ~~ilT~SGD~TCalWDie~g~~~~~f~GH~gD---------------V~sl-----sl~p~~------------------ 198 (343)
T KOG0286|consen 157 NHILTGSGDMTCALWDIETGQQTQVFHGHTGD---------------VMSL-----SLSPSD------------------ 198 (343)
T ss_pred CceEecCCCceEEEEEcccceEEEEecCCccc---------------EEEE-----ecCCCC------------------
Confidence 4555556778999999999988888776541 2333 111110
Q ss_pred cCCCcCCCCCceeEeeehhhhhhhhcccceeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECCCCcE
Q 003907 282 VSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAI 361 (787)
Q Consensus 282 ~s~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~ 361 (787)
..++++++.|+..+|||++.+..
T Consensus 199 ---------------------------------------------------------~ntFvSg~cD~~aklWD~R~~~c 221 (343)
T KOG0286|consen 199 ---------------------------------------------------------GNTFVSGGCDKSAKLWDVRSGQC 221 (343)
T ss_pred ---------------------------------------------------------CCeEEecccccceeeeeccCcce
Confidence 01233567789999999999999
Q ss_pred EEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEcc
Q 003907 362 ISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSH 441 (787)
Q Consensus 362 v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSp 441 (787)
+.+|.+|++.|++++|.|+|.-+||+|+|++ +|+||++.. +.+..+..-.....|++++||-
T Consensus 222 ~qtF~ghesDINsv~ffP~G~afatGSDD~t-cRlyDlRaD-----------------~~~a~ys~~~~~~gitSv~FS~ 283 (343)
T KOG0286|consen 222 VQTFEGHESDINSVRFFPSGDAFATGSDDAT-CRLYDLRAD-----------------QELAVYSHDSIICGITSVAFSK 283 (343)
T ss_pred eEeecccccccceEEEccCCCeeeecCCCce-eEEEeecCC-----------------cEEeeeccCcccCCceeEEEcc
Confidence 9999999999999999999999999999776 999999652 2444443322345699999999
Q ss_pred CCCEEEEEeCCCeEEEEeCCCCCCccccccccCCC
Q 003907 442 YSQWIAIVSSKGTCHVFVLSPFGGDSGFQTLSSQG 476 (787)
Q Consensus 442 Dg~~LAs~S~dgTVhIwdl~~~gg~~~~~~H~~~~ 476 (787)
.|++|.+|-.|.+++|||.-.....-.+.+|...+
T Consensus 284 SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRv 318 (343)
T KOG0286|consen 284 SGRLLFAGYDDFTCNVWDTLKGERVGVLAGHENRV 318 (343)
T ss_pred cccEEEeeecCCceeEeeccccceEEEeeccCCee
Confidence 99999999999999999987654445677886543
No 14
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.82 E-value=3.4e-19 Score=202.03 Aligned_cols=369 Identities=17% Similarity=0.152 Sum_probs=226.4
Q ss_pred CCCCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCceeEeeeeccCcEEEEEEecCCCCCCCCCCcccc
Q 003907 51 ASEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKL 129 (787)
Q Consensus 51 ~~~~~~~~v~wa~Fd~l~~~~~~~~~vL~lG~~~G-~qVWdv~~~~~~~ells~~dg~V~~v~~lP~P~~~~~~d~F~~s 129 (787)
.+-+++..|.-+.|.. ...+.+|+.|+.++ +++||+.....+..+...|-..|..+.|.++.. ..++..
T Consensus 142 ~fkG~gGvVssl~F~~-----~~~~~lL~sg~~D~~v~vwnl~~~~tcl~~~~~H~S~vtsL~~~~d~~-----~~ls~~ 211 (775)
T KOG0319|consen 142 SFKGHGGVVSSLLFHP-----HWNRWLLASGATDGTVRVWNLNDKRTCLHTMILHKSAVTSLAFSEDSL-----ELLSVG 211 (775)
T ss_pred EecCCCceEEEEEeCC-----ccchhheeecCCCceEEEEEcccCchHHHHHHhhhhheeeeeeccCCc-----eEEEec
Confidence 4677888899899985 33457999999987 899999754445556777888999999987521 111111
Q ss_pred CcEEEEEEcCCCC----CCCCCCCcCCCCCc---ccCCcCCCCCC--CCCCCCEEEEEECCCCeEEEEEeCCC-----cE
Q 003907 130 HPFLLVVAGEDTN----TLAPGQNRSHLGGV---RDGMMDSQSGN--CVNSPTAVRFYSFQSHCYEHVLRFRS-----SV 195 (787)
Q Consensus 130 rpLLavV~~d~~~----~~~~~~~~~~~~~~---r~g~~~~~~~~--~~~~p~tVrlWdlktg~~v~tL~f~s-----~V 195 (787)
|.-+..+ -|-.. ...+ ...+..++ +++. +....+ .+...+++++||.++++++...+-+. ..
T Consensus 212 RDkvi~v-wd~~~~~~l~~lp--~ye~~E~vv~l~~~~-~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~ 287 (775)
T KOG0319|consen 212 RDKVIIV-WDLVQYKKLKTLP--LYESLESVVRLREEL-GGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHL 287 (775)
T ss_pred cCcEEEE-eehhhhhhhheec--hhhheeeEEEechhc-CCcceEEEEecCCceEEEEecccchhhhhhccCCchhhhcc
Confidence 1111000 00000 0000 00111111 2200 000011 12356889999998888876665431 22
Q ss_pred EEEEecCCeEEEEeCCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEcc--ceEEEecCCcee--cCcce
Q 003907 196 CMVRCSPRIVAVGLATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP--RWLAYASNTLLL--SNSGR 271 (787)
Q Consensus 196 ~sV~~s~~~LaV~~~~~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~~~~~lAlsp--r~LAyas~~~~l--~~~g~ 271 (787)
..+.-+.++|++..+.++.+||..+++....|.++..- + +...-+|| ++||.+++.+-+ .+...
T Consensus 288 ~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndE---------I---~Dm~~lG~e~~~laVATNs~~lr~y~~~~ 355 (775)
T KOG0319|consen 288 LAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDE---------I---LDMKFLGPEESHLAVATNSPELRLYTLPT 355 (775)
T ss_pred eeccccCceEEEEccceEEEEEccccEEehhhcCCchh---------h---eeeeecCCccceEEEEeCCCceEEEecCC
Confidence 33334557888888888999998888877777765431 0 22345677 888888875421 11111
Q ss_pred eccccCCC---CCcCCCcCCCCCceeEeeehhhhhhhh---cccc-----eeecccccccCCCCCCCCcccCCccccccc
Q 003907 272 LSPQNLTP---SGVSPSTSPGGSSLVARYAMEHSKQFA---AGLS-----KTLSKYCQELLPDGSSSPVSPNSVWKVGRH 340 (787)
Q Consensus 272 ~s~q~lt~---~~~s~s~sp~~g~lva~~a~d~sk~la---~G~~-----ktls~~~~~l~p~~s~~~~s~s~~~~~~~~ 340 (787)
...+.+.+ ...+... .+.|.+.+.+++|.+..+. .+.. +..+++.+ +...+.. .+....
T Consensus 356 ~~c~ii~GH~e~vlSL~~-~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~------svgava~---~~~~as 425 (775)
T KOG0319|consen 356 SYCQIIPGHTEAVLSLDV-WSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTN------SVGAVAG---SKLGAS 425 (775)
T ss_pred CceEEEeCchhheeeeee-cccCcEEEEecCCceEEEEEecCCcchhhhhhhhccccc------ccceeee---cccCcc
Confidence 11122222 1223332 1335677888888654443 1110 01111111 1111111 122222
Q ss_pred cccccCCCceEEEEECCCCc---------EEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCC
Q 003907 341 AGADMDNAGIVVVKDFVTRA---------IISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNH 411 (787)
Q Consensus 341 ~~~s~~~dG~V~IwDl~s~~---------~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~ 411 (787)
.++++++|+++++|++...+ ...+..+|...|++++.+|+.+++||||. |++.+||++.. +
T Consensus 426 ffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~Sq-DktaKiW~le~-------~-- 495 (775)
T KOG0319|consen 426 FFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQ-DKTAKIWDLEQ-------L-- 495 (775)
T ss_pred EEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEeccc-ccceeeecccC-------c--
Confidence 35678999999999997621 11234689999999999999999999999 55699999952 2
Q ss_pred ccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEeCCCCCCccccccccCC
Q 003907 412 KYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQTLSSQ 475 (787)
Q Consensus 412 ~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~~~gg~~~~~~H~~~ 475 (787)
+.+..|. |+++ .|+|+.|+|..+.||++|.|+||+||.|+++.+..+|.+|+..
T Consensus 496 --------~l~~vLs-GH~R-Gvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~a 549 (775)
T KOG0319|consen 496 --------RLLGVLS-GHTR-GVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSA 549 (775)
T ss_pred --------eEEEEee-CCcc-ceEEEEeccccceeEeccCCceEEEEEeccceeeeeecCccce
Confidence 4666664 6554 4999999999999999999999999999999999999999754
No 15
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=99.81 E-value=1.6e-17 Score=171.46 Aligned_cols=248 Identities=15% Similarity=0.174 Sum_probs=179.5
Q ss_pred CCCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCC----CceeEeeeeccCcEEEEEEecCCCCCCCCCCc
Q 003907 52 SEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDA----SNFNELVSKRDGPVSFLQMQPFPVKDDGCEGF 126 (787)
Q Consensus 52 ~~~~~~~v~wa~Fd~l~~~~~~~~~vL~lG~~~G-~qVWdv~~~----~~~~ells~~dg~V~~v~~lP~P~~~~~~d~F 126 (787)
.++|++.|+-...-. ..+..|+.+.++. +-+|++... |...+.+.+|.--|.-+.+.++.
T Consensus 11 l~gh~d~Vt~la~~~------~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg--------- 75 (315)
T KOG0279|consen 11 LEGHTDWVTALAIKI------KNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDG--------- 75 (315)
T ss_pred ecCCCceEEEEEeec------CCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCC---------
Confidence 578999998776643 1456788888775 899999543 33345566666667777666532
Q ss_pred cccCcEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCC-cEEEEEecC--C
Q 003907 127 RKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRS-SVCMVRCSP--R 203 (787)
Q Consensus 127 ~~srpLLavV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~v~tL~f~s-~V~sV~~s~--~ 203 (787)
+ + |+ + |+| ++++|+||+.+|+..+.|..|. -|++|++++ +
T Consensus 76 --~--~-al-S---------------------~sw----------D~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~ 118 (315)
T KOG0279|consen 76 --N--F-AL-S---------------------ASW----------DGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNR 118 (315)
T ss_pred --c--e-EE-e---------------------ccc----------cceEEEEEecCCcEEEEEEecCCceEEEEecCCCc
Confidence 1 2 22 1 122 4799999999999999998775 789999988 5
Q ss_pred eEEEEe-CCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCcceeccccCCCCCc
Q 003907 204 IVAVGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGV 282 (787)
Q Consensus 204 ~LaV~~-~~~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~~~~~lAlspr~LAyas~~~~l~~~g~~s~q~lt~~~~ 282 (787)
.++.|. |.+|.+||... ++.+++......+ ++..+-|+|+- +.+
T Consensus 119 qivSGSrDkTiklwnt~g-~ck~t~~~~~~~~-----------WVscvrfsP~~-----~~p------------------ 163 (315)
T KOG0279|consen 119 QIVSGSRDKTIKLWNTLG-VCKYTIHEDSHRE-----------WVSCVRFSPNE-----SNP------------------ 163 (315)
T ss_pred eeecCCCcceeeeeeecc-cEEEEEecCCCcC-----------cEEEEEEcCCC-----CCc------------------
Confidence 666655 66799999764 4566665422100 12223332210 000
Q ss_pred CCCcCCCCCceeEeeehhhhhhhhcccceeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECCCCcEE
Q 003907 283 SPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAII 362 (787)
Q Consensus 283 s~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~v 362 (787)
.+++++.|++|+|||+.+.+..
T Consensus 164 ----------------------------------------------------------~Ivs~s~DktvKvWnl~~~~l~ 185 (315)
T KOG0279|consen 164 ----------------------------------------------------------IIVSASWDKTVKVWNLRNCQLR 185 (315)
T ss_pred ----------------------------------------------------------EEEEccCCceEEEEccCCcchh
Confidence 1234567999999999999999
Q ss_pred EEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccC
Q 003907 363 SQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHY 442 (787)
Q Consensus 363 ~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpD 442 (787)
..+.+|++.++.+++||||.++|+|+.||. +.+||+.. + +++|.+.. ...|.+|+|+|.
T Consensus 186 ~~~~gh~~~v~t~~vSpDGslcasGgkdg~-~~LwdL~~-------~----------k~lysl~a---~~~v~sl~fspn 244 (315)
T KOG0279|consen 186 TTFIGHSGYVNTVTVSPDGSLCASGGKDGE-AMLWDLNE-------G----------KNLYSLEA---FDIVNSLCFSPN 244 (315)
T ss_pred hccccccccEEEEEECCCCCEEecCCCCce-EEEEEccC-------C----------ceeEeccC---CCeEeeEEecCC
Confidence 999999999999999999999999999775 89999964 3 57888753 357999999999
Q ss_pred CCEEEEEeCCCeEEEEeCCCCCCc
Q 003907 443 SQWIAIVSSKGTCHVFVLSPFGGD 466 (787)
Q Consensus 443 g~~LAs~S~dgTVhIwdl~~~gg~ 466 (787)
--||+.+...+ |+|||+++....
T Consensus 245 rywL~~at~~s-IkIwdl~~~~~v 267 (315)
T KOG0279|consen 245 RYWLCAATATS-IKIWDLESKAVV 267 (315)
T ss_pred ceeEeeccCCc-eEEEeccchhhh
Confidence 99999887665 999999875443
No 16
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.80 E-value=3e-18 Score=181.89 Aligned_cols=254 Identities=15% Similarity=0.164 Sum_probs=192.1
Q ss_pred CCCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCceeEeeeeccCcEEEEEEecCCCCCCCCCCccccC
Q 003907 52 SEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLH 130 (787)
Q Consensus 52 ~~~~~~~v~wa~Fd~l~~~~~~~~~vL~lG~~~G-~qVWdv~~~~~~~ells~~dg~V~~v~~lP~P~~~~~~d~F~~sr 130 (787)
..+|.+.|.-+.||. .+++|+.+..+- +++||.+..-++.+.+.+|+-.|.++.++|..
T Consensus 146 LrGHt~sv~di~~~a-------~Gk~l~tcSsDl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~g------------- 205 (406)
T KOG0295|consen 146 LRGHTDSVFDISFDA-------SGKYLATCSSDLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLG------------- 205 (406)
T ss_pred hhccccceeEEEEec-------CccEEEecCCccchhheeHHHHHHHHHHhcCcccceeeEEEEecC-------------
Confidence 456777788888874 368999999987 99999987667788889999999999999852
Q ss_pred cEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCC-cEEEEEecC--CeEEE
Q 003907 131 PFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRS-SVCMVRCSP--RIVAV 207 (787)
Q Consensus 131 pLLavV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~v~tL~f~s-~V~sV~~s~--~~LaV 207 (787)
..|+.++ .+++|+.|++.+|.++.++..++ -|..|+.+. .++|.
T Consensus 206 d~ilS~s---------------------------------rD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As 252 (406)
T KOG0295|consen 206 DHILSCS---------------------------------RDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIAS 252 (406)
T ss_pred Ceeeecc---------------------------------cccceeEEecccceeEEeccCchHhEEEEEecCCeeEEEe
Confidence 1454322 24689999999999999998765 688999988 46666
Q ss_pred Ee-CCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCcceeccccCCCCCcCCCc
Q 003907 208 GL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPST 286 (787)
Q Consensus 208 ~~-~~~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~~~~~lAlspr~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~ 286 (787)
+. +.++++|-..+++++..++.|..| +-.+++-|- .+|+. ++-++
T Consensus 253 ~s~dqtl~vW~~~t~~~k~~lR~hEh~-------------vEci~wap~-~~~~~--------------------i~~at 298 (406)
T KOG0295|consen 253 CSNDQTLRVWVVATKQCKAELREHEHP-------------VECIAWAPE-SSYPS--------------------ISEAT 298 (406)
T ss_pred cCCCceEEEEEeccchhhhhhhccccc-------------eEEEEeccc-ccCcc--------------------hhhcc
Confidence 54 457999999999888888877664 223444220 01111 00000
Q ss_pred CCCCCceeEeeehhhhhhhhcccceeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECCCCcEEEEec
Q 003907 287 SPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFK 366 (787)
Q Consensus 287 sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~v~~~~ 366 (787)
...+ .+.....++.|++|++||+.++.++.+|.
T Consensus 299 ~~~~-----------------------------------------------~~~~l~s~SrDktIk~wdv~tg~cL~tL~ 331 (406)
T KOG0295|consen 299 GSTN-----------------------------------------------GGQVLGSGSRDKTIKIWDVSTGMCLFTLV 331 (406)
T ss_pred CCCC-----------------------------------------------CccEEEeecccceEEEEeccCCeEEEEEe
Confidence 0000 00112356789999999999999999999
Q ss_pred cCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEE
Q 003907 367 AHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWI 446 (787)
Q Consensus 367 aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~L 446 (787)
+|...|..++|+|-|+||+++.+|+ ++||||++. + +++..+.- +..-+.++.|..+.-++
T Consensus 332 ghdnwVr~~af~p~Gkyi~ScaDDk-tlrvwdl~~-------~----------~cmk~~~a--h~hfvt~lDfh~~~p~V 391 (406)
T KOG0295|consen 332 GHDNWVRGVAFSPGGKYILSCADDK-TLRVWDLKN-------L----------QCMKTLEA--HEHFVTSLDFHKTAPYV 391 (406)
T ss_pred cccceeeeeEEcCCCeEEEEEecCC-cEEEEEecc-------c----------eeeeccCC--CcceeEEEecCCCCceE
Confidence 9999999999999999999999965 599999965 2 46655542 33458999999999999
Q ss_pred EEEeCCCeEEEEe
Q 003907 447 AIVSSKGTCHVFV 459 (787)
Q Consensus 447 As~S~dgTVhIwd 459 (787)
++|+-|.|+++|.
T Consensus 392 vTGsVdqt~KvwE 404 (406)
T KOG0295|consen 392 VTGSVDQTVKVWE 404 (406)
T ss_pred Eeccccceeeeee
Confidence 9999999999995
No 17
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.80 E-value=2.9e-17 Score=186.62 Aligned_cols=270 Identities=16% Similarity=0.219 Sum_probs=181.2
Q ss_pred CeEEEEEecCc-EEEEEccCCCceeEeeeeccCcEEEEEEecCCCCCCCCCCccccCcEEEEEEcCCCCCCCCCCCcCCC
Q 003907 75 KQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHL 153 (787)
Q Consensus 75 ~~vL~lG~~~G-~qVWdv~~~~~~~ells~~dg~V~~v~~lP~P~~~~~~d~F~~srpLLavV~~d~~~~~~~~~~~~~~ 153 (787)
-++|++|-.+| |.+|.+. .-++...++-.+-+|..+.+. .....||+-+. .
T Consensus 277 t~~lvvgFssG~f~LyelP-~f~lih~LSis~~~I~t~~~N-------------~tGDWiA~g~~-k------------- 328 (893)
T KOG0291|consen 277 TNLLVVGFSSGEFGLYELP-DFNLIHSLSISDQKILTVSFN-------------STGDWIAFGCS-K------------- 328 (893)
T ss_pred ceEEEEEecCCeeEEEecC-CceEEEEeecccceeeEEEec-------------ccCCEEEEcCC-c-------------
Confidence 46899999999 7899994 455667777777778877765 22337776221 1
Q ss_pred CCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCC-CcEEEEEecCC--eEEEEeC-CeEEEEECCCCceeEEEEe
Q 003907 154 GGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFR-SSVCMVRCSPR--IVAVGLA-TQIYCFDALTLENKFSVLT 229 (787)
Q Consensus 154 ~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~v~tL~f~-s~V~sV~~s~~--~LaV~~~-~~I~iwD~~T~e~l~tl~t 229 (787)
-+.+-||+.++..+|-..+.| ..+.+++.+|+ ++|+|.+ ++|++||...+-+..|+..
T Consensus 329 ------------------lgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFte 390 (893)
T KOG0291|consen 329 ------------------LGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTE 390 (893)
T ss_pred ------------------cceEEEEEeeccceeeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEecc
Confidence 147999999999999888866 48999999994 8888764 5899999999999999988
Q ss_pred cCCcccCCCCccccccccceeEEcc--ceEEEecCCceecCccee-ccccCCCCCcCCCcCCCCCceeEeeehhhhhhhh
Q 003907 230 YPVPQLAGQGAVGINVGYGPMAVGP--RWLAYASNTLLLSNSGRL-SPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFA 306 (787)
Q Consensus 230 ~p~p~~~~~~~~~~~~~~~~lAlsp--r~LAyas~~~~l~~~g~~-s~q~lt~~~~s~s~sp~~g~lva~~a~d~sk~la 306 (787)
|.+. +..+.+.- +.|-.++-+ |++ .|+.-......+.++|.--++ +.+|.
T Consensus 391 Hts~-------------Vt~v~f~~~g~~llssSLD------GtVRAwDlkRYrNfRTft~P~p~Qf-scvav------- 443 (893)
T KOG0291|consen 391 HTSG-------------VTAVQFTARGNVLLSSSLD------GTVRAWDLKRYRNFRTFTSPEPIQF-SCVAV------- 443 (893)
T ss_pred CCCc-------------eEEEEEEecCCEEEEeecC------CeEEeeeecccceeeeecCCCceee-eEEEE-------
Confidence 7762 12222221 233333222 222 233322221111122211110 11111
Q ss_pred cccceeecccccccCCCCCCCCcccCCccccccccccccCCC-ceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEE
Q 003907 307 AGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNA-GIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLV 385 (787)
Q Consensus 307 ~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~d-G~V~IwDl~s~~~v~~~~aH~~pIsaLaFSpdG~lLA 385 (787)
++.+.. +..++.| =.|.||++++|+.+-.|.+|.+||.+|+|+|+|..||
T Consensus 444 -------------------------D~sGel----V~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~La 494 (893)
T KOG0291|consen 444 -------------------------DPSGEL----VCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLA 494 (893)
T ss_pred -------------------------cCCCCE----EEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEE
Confidence 111110 1122333 3699999999999999999999999999999999999
Q ss_pred EEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEeCCCCCC
Q 003907 386 TASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGG 465 (787)
Q Consensus 386 TaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~~~gg 465 (787)
|+|. |++||+||+-.. .| ..-++. ....+.+++|+|||+-||+++.||.|.+||++....
T Consensus 495 S~SW-DkTVRiW~if~s-----~~-----------~vEtl~---i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q 554 (893)
T KOG0291|consen 495 SGSW-DKTVRIWDIFSS-----SG-----------TVETLE---IRSDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQ 554 (893)
T ss_pred eccc-cceEEEEEeecc-----Cc-----------eeeeEe---eccceeEEEEcCCCCeEEEEEecceEEEEEhhhcee
Confidence 9999 556999998421 11 222332 224589999999999999999999999999986543
Q ss_pred c
Q 003907 466 D 466 (787)
Q Consensus 466 ~ 466 (787)
.
T Consensus 555 ~ 555 (893)
T KOG0291|consen 555 V 555 (893)
T ss_pred e
Confidence 3
No 18
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.79 E-value=7.5e-18 Score=175.35 Aligned_cols=268 Identities=15% Similarity=0.100 Sum_probs=192.6
Q ss_pred eecccCCCCCCCcEEEEEEeeccCCCCCCCeEEEEEecC-cEEEEEccCCCceeEeeeeccCcEEEEEEecCCCCCCCCC
Q 003907 46 ASISNASEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQN-GFQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCE 124 (787)
Q Consensus 46 ~~~~~~~~~~~~~v~wa~Fd~l~~~~~~~~~vL~lG~~~-G~qVWdv~~~~~~~ells~~dg~V~~v~~lP~P~~~~~~d 124 (787)
+.|-. ..+|+..|.-+.|+- ++.+|++|.-+ -|-+|++...-+-.-.+.+|.|.|-.|.+.++
T Consensus 38 ap~m~-l~gh~geI~~~~F~P-------~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d-------- 101 (338)
T KOG0265|consen 38 APIML-LPGHKGEIYTIKFHP-------DGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRD-------- 101 (338)
T ss_pred chhhh-cCCCcceEEEEEECC-------CCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccC--------
Confidence 34433 678999999999983 46788887665 59999984332334467799999999998754
Q ss_pred CccccCcEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCCcEE-EEEe---
Q 003907 125 GFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRSSVC-MVRC--- 200 (787)
Q Consensus 125 ~F~~srpLLavV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~v~tL~f~s~V~-sV~~--- 200 (787)
.+ .|+. ++ ++++|+.||+++|+.+..++.+..+. ++.-
T Consensus 102 ---~s--~i~S-~g--------------------------------tDk~v~~wD~~tG~~~rk~k~h~~~vNs~~p~rr 143 (338)
T KOG0265|consen 102 ---GS--HILS-CG--------------------------------TDKTVRGWDAETGKRIRKHKGHTSFVNSLDPSRR 143 (338)
T ss_pred ---CC--EEEE-ec--------------------------------CCceEEEEecccceeeehhccccceeeecCcccc
Confidence 22 3332 22 24799999999999999998876544 3333
Q ss_pred cCCeEEEEeC-CeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCcceeccccCCC
Q 003907 201 SPRIVAVGLA-TQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTP 279 (787)
Q Consensus 201 s~~~LaV~~~-~~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~~~~~lAlspr~LAyas~~~~l~~~g~~s~q~lt~ 279 (787)
++.+|..+.+ .++++||+++-+.++++.. + |-..|+ ++...
T Consensus 144 g~~lv~SgsdD~t~kl~D~R~k~~~~t~~~---k-------------yqltAv-----~f~d~----------------- 185 (338)
T KOG0265|consen 144 GPQLVCSGSDDGTLKLWDIRKKEAIKTFEN---K-------------YQLTAV-----GFKDT----------------- 185 (338)
T ss_pred CCeEEEecCCCceEEEEeecccchhhcccc---c-------------eeEEEE-----Eeccc-----------------
Confidence 3356666654 5899999997766555432 1 112232 11110
Q ss_pred CCcCCCcCCCCCceeEeeehhhhhhhhcccceeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECCCC
Q 003907 280 SGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTR 359 (787)
Q Consensus 280 ~~~s~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~ 359 (787)
+.+ +.++.-|+.|++||++.+
T Consensus 186 ----------------------s~q-------------------------------------v~sggIdn~ikvWd~r~~ 206 (338)
T KOG0265|consen 186 ----------------------SDQ-------------------------------------VISGGIDNDIKVWDLRKN 206 (338)
T ss_pred ----------------------ccc-------------------------------------eeeccccCceeeeccccC
Confidence 000 112345789999999999
Q ss_pred cEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccc--cEEEE
Q 003907 360 AIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSA--TIQDI 437 (787)
Q Consensus 360 ~~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a--~I~sl 437 (787)
....++.+|..+|+.|..+|+|.+|.+-+.|. ++++||++|. .++.+++..+..+.++- ....+
T Consensus 207 d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~-tvrvwd~rp~-------------~p~~R~v~if~g~~hnfeknlL~c 272 (338)
T KOG0265|consen 207 DGLYTLSGHADTITGLSLSRYGSFLLSNSMDN-TVRVWDVRPF-------------APSQRCVKIFQGHIHNFEKNLLKC 272 (338)
T ss_pred cceEEeecccCceeeEEeccCCCccccccccc-eEEEEEeccc-------------CCCCceEEEeecchhhhhhhccee
Confidence 99999999999999999999999999999954 5999999873 22235566666544443 35678
Q ss_pred EEccCCCEEEEEeCCCeEEEEeCCCCCCccccccccCCCCC
Q 003907 438 CFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQTLSSQGGD 478 (787)
Q Consensus 438 aFSpDg~~LAs~S~dgTVhIwdl~~~gg~~~~~~H~~~~~~ 478 (787)
+|||+++++.++|.|..+++||....+....+.+|...+..
T Consensus 273 swsp~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~ 313 (338)
T KOG0265|consen 273 SWSPNGTKITAGSADRFVYVWDTTSRRILYKLPGHYGSVNE 313 (338)
T ss_pred eccCCCCccccccccceEEEeecccccEEEEcCCcceeEEE
Confidence 99999999999999999999999877777788888654433
No 19
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.79 E-value=7e-17 Score=196.60 Aligned_cols=236 Identities=14% Similarity=0.212 Sum_probs=161.5
Q ss_pred CeEEEEEecCc-EEEEEccCCCceeEeeeeccCcEEEEEEecCCCCCCCCCCccccCcEEEEEEcCCCCCCCCCCCcCCC
Q 003907 75 KQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHL 153 (787)
Q Consensus 75 ~~vL~lG~~~G-~qVWdv~~~~~~~ells~~dg~V~~v~~lP~P~~~~~~d~F~~srpLLavV~~d~~~~~~~~~~~~~~ 153 (787)
+..|++|..+| ++|||+.. ++....+..|.+.|..+.+.|. ...+|+. ++
T Consensus 545 ~~~las~~~Dg~v~lWd~~~-~~~~~~~~~H~~~V~~l~~~p~------------~~~~L~S-gs--------------- 595 (793)
T PLN00181 545 KSQVASSNFEGVVQVWDVAR-SQLVTEMKEHEKRVWSIDYSSA------------DPTLLAS-GS--------------- 595 (793)
T ss_pred CCEEEEEeCCCeEEEEECCC-CeEEEEecCCCCCEEEEEEcCC------------CCCEEEE-Ec---------------
Confidence 45677776665 99999964 5566677889999999999862 1125544 21
Q ss_pred CCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCCcEEEEEecC---CeEEEEe-CCeEEEEECCCCce-eEEEE
Q 003907 154 GGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRSSVCMVRCSP---RIVAVGL-ATQIYCFDALTLEN-KFSVL 228 (787)
Q Consensus 154 ~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~v~tL~f~s~V~sV~~s~---~~LaV~~-~~~I~iwD~~T~e~-l~tl~ 228 (787)
.+++|++||+++++.+.++..+..|..+.+++ +.|++|. ++.|++||+.+.+. +.++.
T Consensus 596 -----------------~Dg~v~iWd~~~~~~~~~~~~~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~ 658 (793)
T PLN00181 596 -----------------DDGSVKLWSINQGVSIGTIKTKANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMI 658 (793)
T ss_pred -----------------CCCEEEEEECCCCcEEEEEecCCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEec
Confidence 13689999999999999999888999999853 6777765 56899999987652 34444
Q ss_pred ecCCcccCCCCccccccccceeEEccceEEEecCCceecCcceeccccCCCCCcCCCcCCCCCceeEeeehhhhhhhhcc
Q 003907 229 TYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAG 308 (787)
Q Consensus 229 t~p~p~~~~~~~~~~~~~~~~lAlspr~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~sp~~g~lva~~a~d~sk~la~G 308 (787)
+|..+ . .++++....
T Consensus 659 ~h~~~-------------V-------~~v~f~~~~--------------------------------------------- 673 (793)
T PLN00181 659 GHSKT-------------V-------SYVRFVDSS--------------------------------------------- 673 (793)
T ss_pred CCCCC-------------E-------EEEEEeCCC---------------------------------------------
Confidence 43321 1 112222100
Q ss_pred cceeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECCC------CcEEEEeccCCCCeEEEEECCCCC
Q 003907 309 LSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVT------RAIISQFKAHTSPISALCFDPSGT 382 (787)
Q Consensus 309 ~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s------~~~v~~~~aH~~pIsaLaFSpdG~ 382 (787)
.+++++.||+|+|||+.. ...+..+.+|...+.+++|+|+|.
T Consensus 674 --------------------------------~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~ 721 (793)
T PLN00181 674 --------------------------------TLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDG 721 (793)
T ss_pred --------------------------------EEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCC
Confidence 012345689999999974 357889999999999999999999
Q ss_pred EEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEeC
Q 003907 383 LLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVL 460 (787)
Q Consensus 383 lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl 460 (787)
+||+|+.||+ |+||+..... ....+.... ...+..+.-..+...|.+++|+||++.|++++.||+|+||++
T Consensus 722 ~lasgs~D~~-v~iw~~~~~~-----~~~s~~~~~-~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 722 YIATGSETNE-VFVYHKAFPM-----PVLSYKFKT-IDPVSGLEVDDASQFISSVCWRGQSSTLVAANSTGNIKILEM 792 (793)
T ss_pred EEEEEeCCCE-EEEEECCCCC-----ceEEEeccc-CCcccccccCCCCcEEEEEEEcCCCCeEEEecCCCcEEEEec
Confidence 9999999665 9999974210 000000000 000000000112235999999999999999999999999986
No 20
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=99.79 E-value=1.5e-17 Score=169.25 Aligned_cols=227 Identities=17% Similarity=0.174 Sum_probs=159.8
Q ss_pred CCEEEEEECCCCeEEEEEeCC-CcEEEEEecC--CeEEEEeCCeEEEEECCCCce--eEEEEecCCcccCCCCccccccc
Q 003907 172 PTAVRFYSFQSHCYEHVLRFR-SSVCMVRCSP--RIVAVGLATQIYCFDALTLEN--KFSVLTYPVPQLAGQGAVGINVG 246 (787)
Q Consensus 172 p~tVrlWdlktg~~v~tL~f~-s~V~sV~~s~--~~LaV~~~~~I~iwD~~T~e~--l~tl~t~p~p~~~~~~~~~~~~~ 246 (787)
+.|||||.+.+|.+..+++++ +.|-.+.+.+ +.||++....|++||+.+... +.++.+|..
T Consensus 19 DhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~qhvRlyD~~S~np~Pv~t~e~h~k-------------- 84 (311)
T KOG0315|consen 19 DHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAGNQHVRLYDLNSNNPNPVATFEGHTK-------------- 84 (311)
T ss_pred cceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhccCCeeEEEEccCCCCCceeEEeccCC--------------
Confidence 579999999999999999997 4787777766 789999888999999998753 455555432
Q ss_pred cceeEEcc----ceEEEecCCceecCcceeccccCCCCCcCC--CcCCCCCceeEeeehhhhhhhhcccceeeccccccc
Q 003907 247 YGPMAVGP----RWLAYASNTLLLSNSGRLSPQNLTPSGVSP--STSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQEL 320 (787)
Q Consensus 247 ~~~lAlsp----r~LAyas~~~~l~~~g~~s~q~lt~~~~s~--s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l 320 (787)
+.++++- ||+..++.+.. ...|+...+.+... ..+|.+.
T Consensus 85 -NVtaVgF~~dgrWMyTgseDgt-----~kIWdlR~~~~qR~~~~~spVn~----------------------------- 129 (311)
T KOG0315|consen 85 -NVTAVGFQCDGRWMYTGSEDGT-----VKIWDLRSLSCQRNYQHNSPVNT----------------------------- 129 (311)
T ss_pred -ceEEEEEeecCeEEEecCCCce-----EEEEeccCcccchhccCCCCcce-----------------------------
Confidence 2344443 99999887631 12344332211000 0011110
Q ss_pred CCCCCCCCcccCCccccccccccccCCCceEEEEECCCCcEEEEec-cCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeC
Q 003907 321 LPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFK-AHTSPISALCFDPSGTLLVTASVYGNNINIFRI 399 (787)
Q Consensus 321 ~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~v~~~~-aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi 399 (787)
+. -.++..-+..++++|.|+|||+.+.....++. .-..+|.+++..|||++|+.+-.+|+ .-||++
T Consensus 130 --------vv----lhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~-cyvW~l 196 (311)
T KOG0315|consen 130 --------VV----LHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGN-CYVWRL 196 (311)
T ss_pred --------EE----ecCCcceEEeecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEecCCcc-EEEEEc
Confidence 00 11111124467899999999999887666654 34578999999999999999999887 799998
Q ss_pred CCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEeCCCC-CCcccccccc
Q 003907 400 MPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPF-GGDSGFQTLS 473 (787)
Q Consensus 400 ~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~~~-gg~~~~~~H~ 473 (787)
..+. . .....++.+++. +...|..+.||||+++||++|.|.|++||+++.+ ..+..+.+|.
T Consensus 197 ~~~~-----~------~s~l~P~~k~~a--h~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~gh~ 258 (311)
T KOG0315|consen 197 LNHQ-----T------ASELEPVHKFQA--HNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVLTGHQ 258 (311)
T ss_pred cCCC-----c------cccceEhhheec--ccceEEEEEECCCCcEEEeecCCceEEEEecCCceeeEEEeecCC
Confidence 6421 1 112245556542 3456999999999999999999999999999987 7777777774
No 21
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.79 E-value=1.3e-16 Score=175.63 Aligned_cols=327 Identities=14% Similarity=0.160 Sum_probs=204.8
Q ss_pred CCCCCCcEEEEEEeeccCCCCCCCeEEEE-EecCcEEEEEccCCCceeEeee--eccCcEEEEEEecCCCCCCCCCCccc
Q 003907 52 SEDLKDQVTWAGFDRLEYGPSVFKQVLLL-GYQNGFQVLDVEDASNFNELVS--KRDGPVSFLQMQPFPVKDDGCEGFRK 128 (787)
Q Consensus 52 ~~~~~~~v~wa~Fd~l~~~~~~~~~vL~l-G~~~G~qVWdv~~~~~~~ells--~~dg~V~~v~~lP~P~~~~~~d~F~~ 128 (787)
..+|..=|..++|.- ++..+++ |.++.+-+||-.....+.++-+ .|.|.|..|.++|+-
T Consensus 186 ~r~HskFV~~VRysP-------DG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs----------- 247 (603)
T KOG0318|consen 186 FREHSKFVNCVRYSP-------DGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDS----------- 247 (603)
T ss_pred ccccccceeeEEECC-------CCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCC-----------
Confidence 344666788888863 3445554 5455599999865444444432 688999999999963
Q ss_pred cCcEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCCcEE----EEEe-cCC
Q 003907 129 LHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRSSVC----MVRC-SPR 203 (787)
Q Consensus 129 srpLLavV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~v~tL~f~s~V~----sV~~-s~~ 203 (787)
+ -+|.+++| .+++|||..+++++.++.+.+.|. .+-+ +..
T Consensus 248 ~--~~~T~SaD---------------------------------kt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~ 292 (603)
T KOG0318|consen 248 T--QFLTVSAD---------------------------------KTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDH 292 (603)
T ss_pred c--eEEEecCC---------------------------------ceEEEEEeeccceEEEeecCCchhceEEEEEEeCCe
Confidence 2 34555543 589999999999999999887652 2222 457
Q ss_pred eEEEEeCCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEcc--ceEEEecCCcee--cCcceeccccCCC
Q 003907 204 IVAVGLATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP--RWLAYASNTLLL--SNSGRLSPQNLTP 279 (787)
Q Consensus 204 ~LaV~~~~~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~~~~~lAlsp--r~LAyas~~~~l--~~~g~~s~q~lt~ 279 (787)
++.|.+.+.|.++++.+++.++++.+|.-+ ...++++| .+|-.++.+..+ |..|..--+.+.+
T Consensus 293 lItVSl~G~in~ln~~d~~~~~~i~GHnK~-------------ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g 359 (603)
T KOG0318|consen 293 LITVSLSGTINYLNPSDPSVLKVISGHNKS-------------ITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAG 359 (603)
T ss_pred EEEEEcCcEEEEecccCCChhheecccccc-------------eeEEEEcCCCCEEEeeccCceEEEEecCCcccccccc
Confidence 788899999999999999999999887653 45678877 777777766433 2222111111110
Q ss_pred -----CCcCCCcCCCCCceeEeeehhhhhhhh----cccce----ee------------------cccccc-cCC-----
Q 003907 280 -----SGVSPSTSPGGSSLVARYAMEHSKQFA----AGLSK----TL------------------SKYCQE-LLP----- 322 (787)
Q Consensus 280 -----~~~s~s~sp~~g~lva~~a~d~sk~la----~G~~k----tl------------------s~~~~~-l~p----- 322 (787)
.......+ .++.+.. +.+|....+. .|..+ .+ ..+-.- ++.
T Consensus 360 ~~h~nqI~~~~~~-~~~~~~t-~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~ 437 (603)
T KOG0318|consen 360 KGHTNQIKGMAAS-ESGELFT-IGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKV 437 (603)
T ss_pred ccccceEEEEeec-CCCcEEE-EecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcc
Confidence 00000000 1111110 1111110000 00000 00 000000 000
Q ss_pred ----CCC-CCCcccCCccccccccccccCCCceEEEEECCCCc--EEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEE
Q 003907 323 ----DGS-SSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRA--IISQFKAHTSPISALCFDPSGTLLVTASVYGNNIN 395 (787)
Q Consensus 323 ----~~s-~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~--~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~Ir 395 (787)
-+. ....+.++ .....+.+.+||.|+||.+.... ....+..|..+|++++|||||+|||.+...+. +-
T Consensus 438 ~~~~~~y~~s~vAv~~----~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rk-vv 512 (603)
T KOG0318|consen 438 SSIPIGYESSAVAVSP----DGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDASRK-VV 512 (603)
T ss_pred eeeccccccceEEEcC----CCCEEEEecccceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEeccCCc-EE
Confidence 000 01111122 22234567899999999998755 34456789999999999999999999998665 88
Q ss_pred EEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEeCCCCCCcccc
Q 003907 396 IFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGF 469 (787)
Q Consensus 396 VWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~~~gg~~~~ 469 (787)
+||+... ....-+.+.|+++|.+|+||||.++||+||.|-+|+||+++.....+.+
T Consensus 513 ~yd~~s~------------------~~~~~~w~FHtakI~~~aWsP~n~~vATGSlDt~Viiysv~kP~~~i~i 568 (603)
T KOG0318|consen 513 LYDVASR------------------EVKTNRWAFHTAKINCVAWSPNNKLVATGSLDTNVIIYSVKKPAKHIII 568 (603)
T ss_pred EEEcccC------------------ceecceeeeeeeeEEEEEeCCCceEEEeccccceEEEEEccChhhheEe
Confidence 9998642 2222334557789999999999999999999999999999877655443
No 22
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.78 E-value=9.9e-17 Score=183.61 Aligned_cols=249 Identities=18% Similarity=0.195 Sum_probs=180.9
Q ss_pred CCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCC-ceeEeeeeccCcEEEEEEecCCCCCCCCCCccccCcEE
Q 003907 56 KDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDAS-NFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFL 133 (787)
Q Consensus 56 ~~~v~wa~Fd~l~~~~~~~~~vL~lG~~~G-~qVWdv~~~~-~~~ells~~dg~V~~v~~lP~P~~~~~~d~F~~srpLL 133 (787)
+.-|..+.|- .+++.|+.+..++ +++|+.+... +....+..|.-.|..+.|.|++ + .|
T Consensus 159 ~~sv~~~~fs-------~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~-----------~--~l 218 (456)
T KOG0266|consen 159 CPSVTCVDFS-------PDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDG-----------S--YL 218 (456)
T ss_pred cCceEEEEEc-------CCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCC-----------c--EE
Confidence 4445555553 2466788887766 8999995433 1444557888899999999863 1 33
Q ss_pred EEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEEC-CCCeEEEEEeCC-CcEEEEEecC--CeEEEE-
Q 003907 134 LVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSF-QSHCYEHVLRFR-SSVCMVRCSP--RIVAVG- 208 (787)
Q Consensus 134 avV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVrlWdl-ktg~~v~tL~f~-s~V~sV~~s~--~~LaV~- 208 (787)
+++. .+.+|++||+ ..+..+++++.| ..|++++|++ ++|+.|
T Consensus 219 --~s~s-------------------------------~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs 265 (456)
T KOG0266|consen 219 --LSGS-------------------------------DDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGS 265 (456)
T ss_pred --EEec-------------------------------CCceEEEeeccCCCeEEEEecCCCCceEEEEecCCCCEEEEec
Confidence 2321 1369999999 556899999866 5899999998 566665
Q ss_pred eCCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCcceeccccCCCCCcCCCcCC
Q 003907 209 LATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSP 288 (787)
Q Consensus 209 ~~~~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~~~~~lAlspr~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~sp 288 (787)
.++.|+|||+.++++...+.+|..+ ...+++ ..+.
T Consensus 266 ~D~tvriWd~~~~~~~~~l~~hs~~-------------is~~~f-------~~d~------------------------- 300 (456)
T KOG0266|consen 266 DDGTVRIWDVRTGECVRKLKGHSDG-------------ISGLAF-------SPDG------------------------- 300 (456)
T ss_pred CCCcEEEEeccCCeEEEeeeccCCc-------------eEEEEE-------CCCC-------------------------
Confidence 4668999999999999999887653 223333 2211
Q ss_pred CCCceeEeeehhhhhhhhcccceeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECCCCc--EEEEec
Q 003907 289 GGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRA--IISQFK 366 (787)
Q Consensus 289 ~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~--~v~~~~ 366 (787)
.. +..++.||.|+|||+.++. ++..+.
T Consensus 301 --~~-------------------------------------------------l~s~s~d~~i~vwd~~~~~~~~~~~~~ 329 (456)
T KOG0266|consen 301 --NL-------------------------------------------------LVSASYDGTIRVWDLETGSKLCLKLLS 329 (456)
T ss_pred --CE-------------------------------------------------EEEcCCCccEEEEECCCCceeeeeccc
Confidence 00 1123568999999999998 678888
Q ss_pred cCCCC--eEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccc--cEEEEEEccC
Q 003907 367 AHTSP--ISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSA--TIQDICFSHY 442 (787)
Q Consensus 367 aH~~p--IsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a--~I~slaFSpD 442 (787)
.|..+ +++++|+|+|.+|+++..|+ .+++||+.. + ..+.. .+++... .+.+..++++
T Consensus 330 ~~~~~~~~~~~~fsp~~~~ll~~~~d~-~~~~w~l~~-------~----------~~~~~-~~~~~~~~~~~~~~~~~~~ 390 (456)
T KOG0266|consen 330 GAENSAPVTSVQFSPNGKYLLSASLDR-TLKLWDLRS-------G----------KSVGT-YTGHSNLVRCIFSPTLSTG 390 (456)
T ss_pred CCCCCCceeEEEECCCCcEEEEecCCC-eEEEEEccC-------C----------cceee-ecccCCcceeEecccccCC
Confidence 87666 99999999999999999955 599999953 1 12222 2333332 4666777999
Q ss_pred CCEEEEEeCCCeEEEEeCCCCCCccccccc
Q 003907 443 SQWIAIVSSKGTCHVFVLSPFGGDSGFQTL 472 (787)
Q Consensus 443 g~~LAs~S~dgTVhIwdl~~~gg~~~~~~H 472 (787)
++++.+++.|++|++|++........+..|
T Consensus 391 ~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h 420 (456)
T KOG0266|consen 391 GKLIYSGSEDGSVYVWDSSSGGILQRLEGH 420 (456)
T ss_pred CCeEEEEeCCceEEEEeCCccchhhhhcCC
Confidence 999999999999999999986666677777
No 23
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=99.78 E-value=1.7e-17 Score=180.70 Aligned_cols=215 Identities=15% Similarity=0.175 Sum_probs=148.2
Q ss_pred CEEEEEECCCCeEEEEEeCC-CcEEEEEecC--CeEEE-EeCCeEEEEECCCCceeEEEEecCCcccCCCCccccccccc
Q 003907 173 TAVRFYSFQSHCYEHVLRFR-SSVCMVRCSP--RIVAV-GLATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYG 248 (787)
Q Consensus 173 ~tVrlWdlktg~~v~tL~f~-s~V~sV~~s~--~~LaV-~~~~~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~~~~ 248 (787)
+.+|+|+. .|.++.+|.++ ++|.++++|+ .+|+. +.++++.+||+.+++..+.+.-+..|- ..
T Consensus 257 G~~riw~~-~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~------------lD 323 (524)
T KOG0273|consen 257 GEARIWNK-DGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPA------------LD 323 (524)
T ss_pred cEEEEEec-CchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeeccCCc------------cc
Confidence 68999996 68888899765 7999999998 34554 567789999999998777776555430 00
Q ss_pred eeEE-ccceEEEecCCceecCcceeccccCCCCCcCCCcCCCCCceeEeeehhhhhhhhcccceeecccccccCCCCCCC
Q 003907 249 PMAV-GPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSS 327 (787)
Q Consensus 249 ~lAl-spr~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~ 327 (787)
+.+ +..-.|.++.+..+ .|.++-- .+-.+++.++-. ..+
T Consensus 324 -VdW~~~~~F~ts~td~~i--------------------------~V~kv~~-------~~P~~t~~GH~g------~V~ 363 (524)
T KOG0273|consen 324 -VDWQSNDEFATSSTDGCI--------------------------HVCKVGE-------DRPVKTFIGHHG------EVN 363 (524)
T ss_pred -eEEecCceEeecCCCceE--------------------------EEEEecC-------CCcceeeecccC------ceE
Confidence 111 11112222222100 0111000 000023333221 122
Q ss_pred CcccCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCC---------CCEEEEEEcCCCEEEEEe
Q 003907 328 PVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPS---------GTLLVTASVYGNNINIFR 398 (787)
Q Consensus 328 ~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~v~~~~aH~~pIsaLaFSpd---------G~lLATaS~dG~~IrVWd 398 (787)
.+-+++ .+..+++++.|++++||..........|.+|...|..+.|+|+ |..||+++.|+ ++++||
T Consensus 364 alk~n~----tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~ds-tV~lwd 438 (524)
T KOG0273|consen 364 ALKWNP----TGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDS-TVKLWD 438 (524)
T ss_pred EEEECC----CCceEEEecCCCeeEeeecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCC-eEEEEE
Confidence 222222 2334567899999999999999999999999999999999996 45899999966 599999
Q ss_pred CCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEeCCCCC
Q 003907 399 IMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFG 464 (787)
Q Consensus 399 i~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~~~g 464 (787)
+.. | .+++.|.+ ++..|++++|||||+|||+|+.||.||||++....
T Consensus 439 v~~-------g----------v~i~~f~k--H~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~ 485 (524)
T KOG0273|consen 439 VES-------G----------VPIHTLMK--HQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGK 485 (524)
T ss_pred ccC-------C----------ceeEeecc--CCCceEEEEecCCCcEEEecCCCCeeEeccccchh
Confidence 964 4 68888876 35689999999999999999999999999998653
No 24
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.77 E-value=9.5e-18 Score=178.11 Aligned_cols=251 Identities=15% Similarity=0.193 Sum_probs=189.0
Q ss_pred CCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCceeEeeeeccCcEEEEEEecCCCCCCCCCCccccCc
Q 003907 53 EDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHP 131 (787)
Q Consensus 53 ~~~~~~v~wa~Fd~l~~~~~~~~~vL~lG~~~G-~qVWdv~~~~~~~ells~~dg~V~~v~~lP~P~~~~~~d~F~~srp 131 (787)
.+++-.|..+-|.. ..-+++++++++ +++||.+ ++++.+.+.+|...|..|.+. .+.-
T Consensus 105 ~g~r~~vt~v~~hp-------~~~~v~~as~d~tikv~D~~-tg~~e~~LrGHt~sv~di~~~-------------a~Gk 163 (406)
T KOG0295|consen 105 AGHRSSVTRVIFHP-------SEALVVSASEDATIKVFDTE-TGELERSLRGHTDSVFDISFD-------------ASGK 163 (406)
T ss_pred hccccceeeeeecc-------CceEEEEecCCceEEEEEcc-chhhhhhhhccccceeEEEEe-------------cCcc
Confidence 44666788777753 245777777775 9999996 588888888998889888876 2322
Q ss_pred EEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCC-CeEEEEEeCCC-cEEEEEecC--CeEEE
Q 003907 132 FLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQS-HCYEHVLRFRS-SVCMVRCSP--RIVAV 207 (787)
Q Consensus 132 LLavV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlkt-g~~v~tL~f~s-~V~sV~~s~--~~LaV 207 (787)
+||. +.. +..+++||+.+ .++++.+..+. .|.+|.+-| +.|+.
T Consensus 164 ~l~t--cSs-------------------------------Dl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS 210 (406)
T KOG0295|consen 164 YLAT--CSS-------------------------------DLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILS 210 (406)
T ss_pred EEEe--cCC-------------------------------ccchhheeHHHHHHHHHHhcCcccceeeEEEEecCCeeee
Confidence 5543 311 13489999987 56777776654 678888866 56666
Q ss_pred Ee-CCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCcceeccccCCCCCcCCCc
Q 003907 208 GL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPST 286 (787)
Q Consensus 208 ~~-~~~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~~~~~lAlspr~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~ 286 (787)
+. |+.|+.||+.|+.+++++..|+.+ +..+++ ..+
T Consensus 211 ~srD~tik~We~~tg~cv~t~~~h~ew-------------vr~v~v-------~~D------------------------ 246 (406)
T KOG0295|consen 211 CSRDNTIKAWECDTGYCVKTFPGHSEW-------------VRMVRV-------NQD------------------------ 246 (406)
T ss_pred cccccceeEEecccceeEEeccCchHh-------------EEEEEe-------cCC------------------------
Confidence 54 667999999999999998876653 222322 111
Q ss_pred CCCCCceeEeeehhhhhhhhcccceeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECCCCcEEEEec
Q 003907 287 SPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFK 366 (787)
Q Consensus 287 sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~v~~~~ 366 (787)
|.+ ++++++|.+|++|-+.++++...++
T Consensus 247 ----Gti------------------------------------------------~As~s~dqtl~vW~~~t~~~k~~lR 274 (406)
T KOG0295|consen 247 ----GTI------------------------------------------------IASCSNDQTLRVWVVATKQCKAELR 274 (406)
T ss_pred ----eeE------------------------------------------------EEecCCCceEEEEEeccchhhhhhh
Confidence 111 1245678899999999999999999
Q ss_pred cCCCCeEEEEECCC----------C-----CEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEeccccc
Q 003907 367 AHTSPISALCFDPS----------G-----TLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITS 431 (787)
Q Consensus 367 aH~~pIsaLaFSpd----------G-----~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~ 431 (787)
.|+.+|-+++|-|. | .+|+++|.|+ +||+||+.. | .++.+|. |+ .
T Consensus 275 ~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDk-tIk~wdv~t-------g----------~cL~tL~-gh-d 334 (406)
T KOG0295|consen 275 EHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDK-TIKIWDVST-------G----------MCLFTLV-GH-D 334 (406)
T ss_pred ccccceEEEEecccccCcchhhccCCCCCccEEEeecccc-eEEEEeccC-------C----------eEEEEEe-cc-c
Confidence 99999999998763 3 5899999955 599999965 4 6888885 43 3
Q ss_pred ccEEEEEEccCCCEEEEEeCCCeEEEEeCCCCCCcccccccc
Q 003907 432 ATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQTLS 473 (787)
Q Consensus 432 a~I~slaFSpDg~~LAs~S~dgTVhIwdl~~~gg~~~~~~H~ 473 (787)
..|.+++|+|-|+||+++.+|+|+||||++...+..++..|.
T Consensus 335 nwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~ 376 (406)
T KOG0295|consen 335 NWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHE 376 (406)
T ss_pred ceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCc
Confidence 469999999999999999999999999999988888777664
No 25
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.77 E-value=3.3e-16 Score=190.73 Aligned_cols=247 Identities=14% Similarity=0.107 Sum_probs=168.0
Q ss_pred CCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCC---Cce--eEee-eeccCcEEEEEEecCCCCCCCCCC
Q 003907 53 EDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDA---SNF--NELV-SKRDGPVSFLQMQPFPVKDDGCEG 125 (787)
Q Consensus 53 ~~~~~~v~wa~Fd~l~~~~~~~~~vL~lG~~~G-~qVWdv~~~---~~~--~ell-s~~dg~V~~v~~lP~P~~~~~~d~ 125 (787)
..|.+.|.-+.|+. ++++|++|..+| ++|||++.. +.. ..++ -.+...|..+.+.|.
T Consensus 480 ~~~~~~V~~i~fs~-------dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~--------- 543 (793)
T PLN00181 480 LNSSNLVCAIGFDR-------DGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELASRSKLSGICWNSY--------- 543 (793)
T ss_pred cCCCCcEEEEEECC-------CCCEEEEEeCCCEEEEEECCcccccccccccceEEecccCceeeEEeccC---------
Confidence 34778899899984 356788877766 999998531 100 0011 112346777776642
Q ss_pred ccccCcEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCC-CcEEEEEecC--
Q 003907 126 FRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFR-SSVCMVRCSP-- 202 (787)
Q Consensus 126 F~~srpLLavV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~v~tL~f~-s~V~sV~~s~-- 202 (787)
.. .+||..+ .+++|+|||+.+++.+.+++.+ ..|++|++++
T Consensus 544 -~~--~~las~~---------------------------------~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~ 587 (793)
T PLN00181 544 -IK--SQVASSN---------------------------------FEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSAD 587 (793)
T ss_pred -CC--CEEEEEe---------------------------------CCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCC
Confidence 12 2554422 1368999999999999999755 5899999975
Q ss_pred -CeEEEEe-CCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCcceeccccCCCC
Q 003907 203 -RIVAVGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPS 280 (787)
Q Consensus 203 -~~LaV~~-~~~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~~~~~lAlspr~LAyas~~~~l~~~g~~s~q~lt~~ 280 (787)
.+|+++. ++.|++||+.+++.+.++..+.. ...+ ++....
T Consensus 588 ~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~~~--------------v~~v-------~~~~~~----------------- 629 (793)
T PLN00181 588 PTLLASGSDDGSVKLWSINQGVSIGTIKTKAN--------------ICCV-------QFPSES----------------- 629 (793)
T ss_pred CCEEEEEcCCCEEEEEECCCCcEEEEEecCCC--------------eEEE-------EEeCCC-----------------
Confidence 4677655 56899999999887776653211 0111 121100
Q ss_pred CcCCCcCCCCCceeEeeehhhhhhhhcccceeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECCCCc
Q 003907 281 GVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRA 360 (787)
Q Consensus 281 ~~s~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~ 360 (787)
|. .++.+..||.|++||+.+.+
T Consensus 630 ----------g~------------------------------------------------~latgs~dg~I~iwD~~~~~ 651 (793)
T PLN00181 630 ----------GR------------------------------------------------SLAFGSADHKVYYYDLRNPK 651 (793)
T ss_pred ----------CC------------------------------------------------EEEEEeCCCeEEEEECCCCC
Confidence 00 01234578999999998765
Q ss_pred -EEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEE
Q 003907 361 -IISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICF 439 (787)
Q Consensus 361 -~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaF 439 (787)
.+..+.+|..+|.+++|. ++.+|+|+|.|++ |+|||+..... + .....+..+. |+ ...|.+++|
T Consensus 652 ~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~-ikiWd~~~~~~----~-------~~~~~l~~~~-gh-~~~i~~v~~ 716 (793)
T PLN00181 652 LPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNT-LKLWDLSMSIS----G-------INETPLHSFM-GH-TNVKNFVGL 716 (793)
T ss_pred ccceEecCCCCCEEEEEEe-CCCEEEEEECCCE-EEEEeCCCCcc----c-------cCCcceEEEc-CC-CCCeeEEEE
Confidence 577889999999999997 7889999999765 99999853110 0 0012445553 43 356899999
Q ss_pred ccCCCEEEEEeCCCeEEEEeCCC
Q 003907 440 SHYSQWIAIVSSKGTCHVFVLSP 462 (787)
Q Consensus 440 SpDg~~LAs~S~dgTVhIwdl~~ 462 (787)
+|++++||+++.|++|+||+...
T Consensus 717 s~~~~~lasgs~D~~v~iw~~~~ 739 (793)
T PLN00181 717 SVSDGYIATGSETNEVFVYHKAF 739 (793)
T ss_pred cCCCCEEEEEeCCCEEEEEECCC
Confidence 99999999999999999999653
No 26
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=99.77 E-value=1.5e-16 Score=164.29 Aligned_cols=226 Identities=15% Similarity=0.207 Sum_probs=162.6
Q ss_pred CCeEEEEEecCc-EEEEEccCCCceeEeeeeccCcEEEEEEecCCCCCCCCCCccccCcEEEEEEcCCCCCCCCCCCcCC
Q 003907 74 FKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSH 152 (787)
Q Consensus 74 ~~~vL~lG~~~G-~qVWdv~~~~~~~ells~~dg~V~~v~~lP~P~~~~~~d~F~~srpLLavV~~d~~~~~~~~~~~~~ 152 (787)
+++..+.|..+| +++||++ .++....|.+|...|.+++|.|+ +|.+ |+|.
T Consensus 74 dg~~alS~swD~~lrlWDl~-~g~~t~~f~GH~~dVlsva~s~d------------n~qi---vSGS------------- 124 (315)
T KOG0279|consen 74 DGNFALSASWDGTLRLWDLA-TGESTRRFVGHTKDVLSVAFSTD------------NRQI---VSGS------------- 124 (315)
T ss_pred CCceEEeccccceEEEEEec-CCcEEEEEEecCCceEEEEecCC------------Ccee---ecCC-------------
Confidence 577888888877 8999996 46888899999999999999974 3333 3331
Q ss_pred CCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeC--CCcEEEEEecCC----eEEE-EeCCeEEEEECCCCceeE
Q 003907 153 LGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRF--RSSVCMVRCSPR----IVAV-GLATQIYCFDALTLENKF 225 (787)
Q Consensus 153 ~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~v~tL~f--~s~V~sV~~s~~----~LaV-~~~~~I~iwD~~T~e~l~ 225 (787)
.++++++||...+......+. +.-|..|+|+|+ +|+. +-|..+++||+.+.++.+
T Consensus 125 ------------------rDkTiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~ 186 (315)
T KOG0279|consen 125 ------------------RDKTIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRT 186 (315)
T ss_pred ------------------CcceeeeeeecccEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhh
Confidence 248999999987665554444 568999999995 4444 446789999999999888
Q ss_pred EEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCcceeccccCCCCCcCCCcCCCCCceeEeeehhhhhhh
Q 003907 226 SVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQF 305 (787)
Q Consensus 226 tl~t~p~p~~~~~~~~~~~~~~~~lAlspr~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~sp~~g~lva~~a~d~sk~l 305 (787)
++.+|..- .+.++++| + |++
T Consensus 187 ~~~gh~~~-------------v~t~~vSp-------D----------------------------Gsl------------ 206 (315)
T KOG0279|consen 187 TFIGHSGY-------------VNTVTVSP-------D----------------------------GSL------------ 206 (315)
T ss_pred cccccccc-------------EEEEEECC-------C----------------------------CCE------------
Confidence 77665431 23344432 1 111
Q ss_pred hcccceeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEE
Q 003907 306 AAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLV 385 (787)
Q Consensus 306 a~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~v~~~~aH~~pIsaLaFSpdG~lLA 385 (787)
.+++..||.+.+||+..++.+..+ .|..+|++++|+|+--.|+
T Consensus 207 ------------------------------------casGgkdg~~~LwdL~~~k~lysl-~a~~~v~sl~fspnrywL~ 249 (315)
T KOG0279|consen 207 ------------------------------------CASGGKDGEAMLWDLNEGKNLYSL-EAFDIVNSLCFSPNRYWLC 249 (315)
T ss_pred ------------------------------------EecCCCCceEEEEEccCCceeEec-cCCCeEeeEEecCCceeEe
Confidence 013567899999999999987776 4678999999999987776
Q ss_pred EEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEe---ccc--c--cccEEEEEEccCCCEEEEEeCCCeEEEE
Q 003907 386 TASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLH---RGI--T--SATIQDICFSHYSQWIAIVSSKGTCHVF 458 (787)
Q Consensus 386 TaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~---rG~--~--~a~I~slaFSpDg~~LAs~S~dgTVhIw 458 (787)
.|- ++.|+|||+.+.. .+.+|+ .|. . ...-.+++||+||+.|.++-.|+.|++|
T Consensus 250 ~at--~~sIkIwdl~~~~-----------------~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~ 310 (315)
T KOG0279|consen 250 AAT--ATSIKIWDLESKA-----------------VVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVW 310 (315)
T ss_pred ecc--CCceEEEeccchh-----------------hhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEE
Confidence 554 5569999996521 222221 011 0 1124678999999999999999999999
Q ss_pred eCCC
Q 003907 459 VLSP 462 (787)
Q Consensus 459 dl~~ 462 (787)
.+..
T Consensus 311 qv~~ 314 (315)
T KOG0279|consen 311 QVAK 314 (315)
T ss_pred Eeec
Confidence 8753
No 27
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.76 E-value=4.2e-17 Score=172.68 Aligned_cols=237 Identities=17% Similarity=0.253 Sum_probs=185.2
Q ss_pred CCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCceeEeeeeccCcEEEEEEecCCCCCCCCCCccccCcE
Q 003907 54 DLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPF 132 (787)
Q Consensus 54 ~~~~~v~wa~Fd~l~~~~~~~~~vL~lG~~~G-~qVWdv~~~~~~~ells~~dg~V~~v~~lP~P~~~~~~d~F~~srpL 132 (787)
+|..-|..+.|| + ..+.|++|..++ ++|||+. ++.+.-.|.+|-..|+.|++++ .+|+
T Consensus 149 gHlgWVr~vavd-----P--~n~wf~tgs~DrtikIwDla-tg~LkltltGhi~~vr~vavS~-------------rHpY 207 (460)
T KOG0285|consen 149 GHLGWVRSVAVD-----P--GNEWFATGSADRTIKIWDLA-TGQLKLTLTGHIETVRGVAVSK-------------RHPY 207 (460)
T ss_pred hccceEEEEeeC-----C--CceeEEecCCCceeEEEEcc-cCeEEEeecchhheeeeeeecc-------------cCce
Confidence 355556666665 3 267999999886 8999995 6888888999999999999874 5788
Q ss_pred EEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCC-CcEEEEEecC--CeEEEEe
Q 003907 133 LLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFR-SSVCMVRCSP--RIVAVGL 209 (787)
Q Consensus 133 LavV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~v~tL~f~-s~V~sV~~s~--~~LaV~~ 209 (787)
|.. +++ ++.|+-|||..++.|+.+-.+ +.|++++.-| ++|+++.
T Consensus 208 lFs-~ge--------------------------------dk~VKCwDLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~g 254 (460)
T KOG0285|consen 208 LFS-AGE--------------------------------DKQVKCWDLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGG 254 (460)
T ss_pred EEE-ecC--------------------------------CCeeEEEechhhhhHHHhccccceeEEEeccccceeEEecC
Confidence 754 333 268999999999999888655 7999999997 6777765
Q ss_pred -CCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCcceeccccCCCCCcCCCcCC
Q 003907 210 -ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSP 288 (787)
Q Consensus 210 -~~~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~~~~~lAlspr~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~sp 288 (787)
|..+++||++|-...+++.+|.+|. ..+.+ -+.+.
T Consensus 255 rDst~RvWDiRtr~~V~~l~GH~~~V-------------~~V~~------~~~dp------------------------- 290 (460)
T KOG0285|consen 255 RDSTIRVWDIRTRASVHVLSGHTNPV-------------ASVMC------QPTDP------------------------- 290 (460)
T ss_pred CcceEEEeeecccceEEEecCCCCcc-------------eeEEe------ecCCC-------------------------
Confidence 5579999999999999999888751 11111 11110
Q ss_pred CCCceeEeeehhhhhhhhcccceeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECCCCcEEEEeccC
Q 003907 289 GGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAH 368 (787)
Q Consensus 289 ~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~v~~~~aH 368 (787)
++.+++.|++|++||+..++...++..|
T Consensus 291 ----------------------------------------------------qvit~S~D~tvrlWDl~agkt~~tlt~h 318 (460)
T KOG0285|consen 291 ----------------------------------------------------QVITGSHDSTVRLWDLRAGKTMITLTHH 318 (460)
T ss_pred ----------------------------------------------------ceEEecCCceEEEeeeccCceeEeeecc
Confidence 1224567999999999999999999999
Q ss_pred CCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEE
Q 003907 369 TSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAI 448 (787)
Q Consensus 369 ~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~LAs 448 (787)
...|.|++.+|.-.++|++|.| . |+-|++ |. | ..+..+. | +++.|.+++-..|| ++++
T Consensus 319 kksvral~lhP~e~~fASas~d-n-ik~w~~-p~------g----------~f~~nls-g-h~~iintl~~nsD~-v~~~ 376 (460)
T KOG0285|consen 319 KKSVRALCLHPKENLFASASPD-N-IKQWKL-PE------G----------EFLQNLS-G-HNAIINTLSVNSDG-VLVS 376 (460)
T ss_pred cceeeEEecCCchhhhhccCCc-c-ceeccC-Cc------c----------chhhccc-c-ccceeeeeeeccCc-eEEE
Confidence 9999999999999999999984 3 899998 32 3 2344443 3 45679999999987 6789
Q ss_pred EeCCCeEEEEeCCC
Q 003907 449 VSSKGTCHVFVLSP 462 (787)
Q Consensus 449 ~S~dgTVhIwdl~~ 462 (787)
|+++|++.+||...
T Consensus 377 G~dng~~~fwdwks 390 (460)
T KOG0285|consen 377 GGDNGSIMFWDWKS 390 (460)
T ss_pred cCCceEEEEEecCc
Confidence 99999999999876
No 28
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.76 E-value=3.5e-18 Score=180.01 Aligned_cols=237 Identities=18% Similarity=0.228 Sum_probs=172.5
Q ss_pred eecccCCCCCCCcEEEEEEeeccCCCCCCCeEEEEEecC-cEEEEEccCCCceeEeeeeccCcEEEEEEecCCCCCCCCC
Q 003907 46 ASISNASEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQN-GFQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCE 124 (787)
Q Consensus 46 ~~~~~~~~~~~~~v~wa~Fd~l~~~~~~~~~vL~lG~~~-G~qVWdv~~~~~~~ells~~dg~V~~v~~lP~P~~~~~~d 124 (787)
..|+-+. ...+.|+...+|. ..++.|.++ .++|||..+ -.+..++.+|.|.|-|+++-
T Consensus 188 ~rinc~S-e~skgVYClQYDD---------~kiVSGlrDnTikiWD~n~-~~c~~~L~GHtGSVLCLqyd---------- 246 (499)
T KOG0281|consen 188 QRINCRS-ENSKGVYCLQYDD---------EKIVSGLRDNTIKIWDKNS-LECLKILTGHTGSVLCLQYD---------- 246 (499)
T ss_pred eeecCCc-ccCCceEEEEecc---------hhhhcccccCceEEecccc-HHHHHhhhcCCCcEEeeecc----------
Confidence 4454422 3556788888872 357788875 699999964 56788999999999999965
Q ss_pred CccccCcEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCC-CcEEEEEecCC
Q 003907 125 GFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFR-SSVCMVRCSPR 203 (787)
Q Consensus 125 ~F~~srpLLavV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~v~tL~f~-s~V~sV~~s~~ 203 (787)
.| +| ++|. ++.||++||..+|+++.++-++ ..|+.++|+..
T Consensus 247 ----~r-vi--isGS-------------------------------SDsTvrvWDv~tge~l~tlihHceaVLhlrf~ng 288 (499)
T KOG0281|consen 247 ----ER-VI--VSGS-------------------------------SDSTVRVWDVNTGEPLNTLIHHCEAVLHLRFSNG 288 (499)
T ss_pred ----ce-EE--EecC-------------------------------CCceEEEEeccCCchhhHHhhhcceeEEEEEeCC
Confidence 22 33 4432 2469999999999999999776 58999999999
Q ss_pred eEEEEeCC-eEEEEECCCCce---eEEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCcceeccccCCC
Q 003907 204 IVAVGLAT-QIYCFDALTLEN---KFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTP 279 (787)
Q Consensus 204 ~LaV~~~~-~I~iwD~~T~e~---l~tl~t~p~p~~~~~~~~~~~~~~~~lAlspr~LAyas~~~~l~~~g~~s~q~lt~ 279 (787)
+++++..+ .|.+||+..... .+.|.+|-. .++.+.++.+
T Consensus 289 ~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrA-------------aVNvVdfd~k------------------------ 331 (499)
T KOG0281|consen 289 YMVTCSKDRSIAVWDMASPTDITLRRVLVGHRA-------------AVNVVDFDDK------------------------ 331 (499)
T ss_pred EEEEecCCceeEEEeccCchHHHHHHHHhhhhh-------------heeeeccccc------------------------
Confidence 99987755 699999654321 000111100 0011111111
Q ss_pred CCcCCCcCCCCCceeEeeehhhhhhhhcccceeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECCCC
Q 003907 280 SGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTR 359 (787)
Q Consensus 280 ~~~s~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~ 359 (787)
.+.+++.|.+|++|++.+.
T Consensus 332 -------------------------------------------------------------yIVsASgDRTikvW~~st~ 350 (499)
T KOG0281|consen 332 -------------------------------------------------------------YIVSASGDRTIKVWSTSTC 350 (499)
T ss_pred -------------------------------------------------------------eEEEecCCceEEEEeccce
Confidence 1234567889999999999
Q ss_pred cEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEE
Q 003907 360 AIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICF 439 (787)
Q Consensus 360 ~~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaF 439 (787)
+.+.++.+|...|.|+.+ .|+++++||.| .+||+||+.. | .++..|. |+ ..-|.+|.|
T Consensus 351 efvRtl~gHkRGIAClQY--r~rlvVSGSSD-ntIRlwdi~~-------G----------~cLRvLe-GH-EeLvRciRF 408 (499)
T KOG0281|consen 351 EFVRTLNGHKRGIACLQY--RDRLVVSGSSD-NTIRLWDIEC-------G----------ACLRVLE-GH-EELVRCIRF 408 (499)
T ss_pred eeehhhhcccccceehhc--cCeEEEecCCC-ceEEEEeccc-------c----------HHHHHHh-ch-HHhhhheee
Confidence 999999999999999987 68999999994 5699999964 4 4555554 43 245899999
Q ss_pred ccCCCEEEEEeCCCeEEEEeCCCC
Q 003907 440 SHYSQWIAIVSSKGTCHVFVLSPF 463 (787)
Q Consensus 440 SpDg~~LAs~S~dgTVhIwdl~~~ 463 (787)
. .+.|++|..||+|+|||+...
T Consensus 409 d--~krIVSGaYDGkikvWdl~aa 430 (499)
T KOG0281|consen 409 D--NKRIVSGAYDGKIKVWDLQAA 430 (499)
T ss_pred c--CceeeeccccceEEEEecccc
Confidence 5 578999999999999999864
No 29
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.76 E-value=2.3e-16 Score=179.44 Aligned_cols=250 Identities=17% Similarity=0.189 Sum_probs=172.6
Q ss_pred CCCCeEEEEEecCc-EEEEEccCCCceeEeeeeccCcEEEEEEecCCCCCCCCCCccccCcEEEEEEcCCCCCCCCCCCc
Q 003907 72 SVFKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNR 150 (787)
Q Consensus 72 ~~~~~vL~lG~~~G-~qVWdv~~~~~~~ells~~dg~V~~v~~lP~P~~~~~~d~F~~srpLLavV~~d~~~~~~~~~~~ 150 (787)
+.+++++++|..+| ++|||.. .+-|.-+++.|...|..+++... ...|+..+
T Consensus 359 SpDgq~iaTG~eDgKVKvWn~~-SgfC~vTFteHts~Vt~v~f~~~-------------g~~llssS------------- 411 (893)
T KOG0291|consen 359 SPDGQLIATGAEDGKVKVWNTQ-SGFCFVTFTEHTSGVTAVQFTAR-------------GNVLLSSS------------- 411 (893)
T ss_pred CCCCcEEEeccCCCcEEEEecc-CceEEEEeccCCCceEEEEEEec-------------CCEEEEee-------------
Confidence 35799999999998 9999985 57789999999999999998732 12333222
Q ss_pred CCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCCcEE--EEEec--CCeEEEEeCC--eEEEEECCCCcee
Q 003907 151 SHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRSSVC--MVRCS--PRIVAVGLAT--QIYCFDALTLENK 224 (787)
Q Consensus 151 ~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~v~tL~f~s~V~--sV~~s--~~~LaV~~~~--~I~iwD~~T~e~l 224 (787)
-+++||.||++....-+++..+.++. .|+.. ..++++|..+ .|++|+++||+++
T Consensus 412 --------------------LDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqll 471 (893)
T KOG0291|consen 412 --------------------LDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLL 471 (893)
T ss_pred --------------------cCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeee
Confidence 24799999999999999999998773 44555 4666666544 4999999999999
Q ss_pred EEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCcceeccccCCCCCcCCCcCCCCCceeEeeehhhhhh
Q 003907 225 FSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQ 304 (787)
Q Consensus 225 ~tl~t~p~p~~~~~~~~~~~~~~~~lAlspr~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~sp~~g~lva~~a~d~sk~ 304 (787)
..|.+|..| +..++++| .+..
T Consensus 472 DiLsGHEgP-------------Vs~l~f~~----------------------------------~~~~------------ 492 (893)
T KOG0291|consen 472 DILSGHEGP-------------VSGLSFSP----------------------------------DGSL------------ 492 (893)
T ss_pred ehhcCCCCc-------------ceeeEEcc----------------------------------ccCe------------
Confidence 999998876 12233322 1111
Q ss_pred hhcccceeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECCCCc-EEEEeccCCCCeEEEEECCCCCE
Q 003907 305 FAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRA-IISQFKAHTSPISALCFDPSGTL 383 (787)
Q Consensus 305 la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~-~v~~~~aH~~pIsaLaFSpdG~l 383 (787)
+++++-|.+|++||+-... .+.++ .+.+.+.+++|+|||+-
T Consensus 493 -------------------------------------LaS~SWDkTVRiW~if~s~~~vEtl-~i~sdvl~vsfrPdG~e 534 (893)
T KOG0291|consen 493 -------------------------------------LASGSWDKTVRIWDIFSSSGTVETL-EIRSDVLAVSFRPDGKE 534 (893)
T ss_pred -------------------------------------EEeccccceEEEEEeeccCceeeeE-eeccceeEEEEcCCCCe
Confidence 1234457899999987653 33333 46678999999999999
Q ss_pred EEEEEcCCCEEEEEeCCCCccc-CCCCCCccccCCcceEEEE-E--ecccccccEEEEEEccCCCEEEEEeCCCeEEEEe
Q 003907 384 LVTASVYGNNINIFRIMPSCMR-SGSGNHKYDWNSSHVHLYK-L--HRGITSATIQDICFSHYSQWIAIVSSKGTCHVFV 459 (787)
Q Consensus 384 LATaS~dG~~IrVWdi~~~~~~-~~~g~~~~~~~~s~~~l~~-l--~rG~~~a~I~slaFSpDg~~LAs~S~dgTVhIwd 459 (787)
||.+..||. |.+||+...... +-.|.. |..+. +...+ + +.......++.|++|+||++|.+|+....|.||+
T Consensus 535 laVaTldgq-Itf~d~~~~~q~~~Idgrk--D~~~g-R~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn~iCiY~ 610 (893)
T KOG0291|consen 535 LAVATLDGQ-ITFFDIKEAVQVGSIDGRK--DLSGG-RKETDRITAENSAKGKTFTTICYSADGKCILAGGESNSICIYD 610 (893)
T ss_pred EEEEEecce-EEEEEhhhceeeccccchh--hcccc-ccccceeehhhcccCCceEEEEEcCCCCEEEecCCcccEEEEE
Confidence 999999775 999998653211 000100 00000 11101 1 0001112489999999999999999999999999
Q ss_pred CCCCCCcccc
Q 003907 460 LSPFGGDSGF 469 (787)
Q Consensus 460 l~~~gg~~~~ 469 (787)
+...--...+
T Consensus 611 v~~~vllkkf 620 (893)
T KOG0291|consen 611 VPEGVLLKKF 620 (893)
T ss_pred CchhheeeeE
Confidence 9764333333
No 30
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.75 E-value=5.7e-17 Score=184.19 Aligned_cols=225 Identities=20% Similarity=0.287 Sum_probs=177.7
Q ss_pred CeEEEEEecCc-EEEEEccCCCceeEeeeeccCcEEEEEEecCCCCCCCCCCccccCcEEEEEEcCCCCCCCCCCCcCCC
Q 003907 75 KQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHL 153 (787)
Q Consensus 75 ~~vL~lG~~~G-~qVWdv~~~~~~~ells~~dg~V~~v~~lP~P~~~~~~d~F~~srpLLavV~~d~~~~~~~~~~~~~~ 153 (787)
.+++++|+++| ++|||+.. ..+.|+...|+|.+..++.+|+.. -+ +.++
T Consensus 424 d~~Iv~G~k~Gel~vfdlaS-~~l~Eti~AHdgaIWsi~~~pD~~------------g~-vT~s---------------- 473 (888)
T KOG0306|consen 424 DRYIVLGTKNGELQVFDLAS-ASLVETIRAHDGAIWSISLSPDNK------------GF-VTGS---------------- 473 (888)
T ss_pred CceEEEeccCCceEEEEeeh-hhhhhhhhccccceeeeeecCCCC------------ce-EEec----------------
Confidence 57899999998 99999954 556788889999999999998631 13 2222
Q ss_pred CCcccCCcCCCCCCCCCCCCEEEEEECCC-----CeE--------EEEEeCCCcEEEEEecC--CeEEEEe-CCeEEEEE
Q 003907 154 GGVRDGMMDSQSGNCVNSPTAVRFYSFQS-----HCY--------EHVLRFRSSVCMVRCSP--RIVAVGL-ATQIYCFD 217 (787)
Q Consensus 154 ~~~r~g~~~~~~~~~~~~p~tVrlWdlkt-----g~~--------v~tL~f~s~V~sV~~s~--~~LaV~~-~~~I~iwD 217 (787)
.+++|+|||++- |.. -.+|++...|++|+++| ++|||++ ++++++|.
T Consensus 474 -----------------aDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyf 536 (888)
T KOG0306|consen 474 -----------------ADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYF 536 (888)
T ss_pred -----------------CCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEE
Confidence 247999999752 111 24677888999999997 8999986 67899999
Q ss_pred CCCCceeEEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCcceeccccCCCCCcCCCcCCCCCceeEee
Q 003907 218 ALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARY 297 (787)
Q Consensus 218 ~~T~e~l~tl~t~p~p~~~~~~~~~~~~~~~~lAlspr~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~sp~~g~lva~~ 297 (787)
+.|++...+|.+|..| +..|.++| .+ .
T Consensus 537 lDtlKFflsLYGHkLP-------------V~smDIS~-----DS------------------------------k----- 563 (888)
T KOG0306|consen 537 LDTLKFFLSLYGHKLP-------------VLSMDISP-----DS------------------------------K----- 563 (888)
T ss_pred ecceeeeeeecccccc-------------eeEEeccC-----Cc------------------------------C-----
Confidence 9999999999999887 23444432 00 0
Q ss_pred ehhhhhhhhcccceeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEE
Q 003907 298 AMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCF 377 (787)
Q Consensus 298 a~d~sk~la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~v~~~~aH~~pIsaLaF 377 (787)
-+.+++.|..|+||-+.-|.+-..|-||+..|.++.|
T Consensus 564 -------------------------------------------livTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F 600 (888)
T KOG0306|consen 564 -------------------------------------------LIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQF 600 (888)
T ss_pred -------------------------------------------eEEeccCCCceEEeccccchhhhhhhcccCceeEEEE
Confidence 0123456889999999999999999999999999999
Q ss_pred CCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEE
Q 003907 378 DPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHV 457 (787)
Q Consensus 378 SpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~LAs~S~dgTVhI 457 (787)
=|+..++.||+.|+. |+-||-.. ..++.+|. | |...|++++-+|+|.+++++|.|.+|++
T Consensus 601 ~P~~~~FFt~gKD~k-vKqWDg~k-----------------Fe~iq~L~-~-H~~ev~cLav~~~G~~vvs~shD~sIRl 660 (888)
T KOG0306|consen 601 LPKTHLFFTCGKDGK-VKQWDGEK-----------------FEEIQKLD-G-HHSEVWCLAVSPNGSFVVSSSHDKSIRL 660 (888)
T ss_pred cccceeEEEecCcce-EEeechhh-----------------hhhheeec-c-chheeeeeEEcCCCCeEEeccCCceeEe
Confidence 999999999999765 99999532 24666775 3 3467999999999999999999999999
Q ss_pred EeCCC
Q 003907 458 FVLSP 462 (787)
Q Consensus 458 wdl~~ 462 (787)
|....
T Consensus 661 wE~td 665 (888)
T KOG0306|consen 661 WERTD 665 (888)
T ss_pred eeccC
Confidence 98654
No 31
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.75 E-value=1.5e-16 Score=182.00 Aligned_cols=189 Identities=22% Similarity=0.298 Sum_probs=146.1
Q ss_pred CCEEEEEECCCCe--EEEEEe-CCCcEEEEEecC--CeEEEEe-CCeEEEEEC-CCCceeEEEEecCCcccCCCCccccc
Q 003907 172 PTAVRFYSFQSHC--YEHVLR-FRSSVCMVRCSP--RIVAVGL-ATQIYCFDA-LTLENKFSVLTYPVPQLAGQGAVGIN 244 (787)
Q Consensus 172 p~tVrlWdlktg~--~v~tL~-f~s~V~sV~~s~--~~LaV~~-~~~I~iwD~-~T~e~l~tl~t~p~p~~~~~~~~~~~ 244 (787)
++++++|++.+++ ..+++. +...|.+++|++ ++|+.+. |.+|+|||+ ..+..++++.+|+.+
T Consensus 180 ~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~----------- 248 (456)
T KOG0266|consen 180 DGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTY----------- 248 (456)
T ss_pred CCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEeeccCCCeEEEEecCCCCc-----------
Confidence 4689999998777 677764 445899999988 5677655 568999999 566888999988774
Q ss_pred cccceeEEccceEEEecCCceecCcceeccccCCCCCcCCCcCCCCCceeEeeehhhhhhhhcccceeecccccccCCCC
Q 003907 245 VGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDG 324 (787)
Q Consensus 245 ~~~~~lAlspr~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~ 324 (787)
...++|.| . + .+
T Consensus 249 --v~~~~f~p-------~---------------------------g-~~------------------------------- 260 (456)
T KOG0266|consen 249 --VTSVAFSP-------D---------------------------G-NL------------------------------- 260 (456)
T ss_pred --eEEEEecC-------C---------------------------C-CE-------------------------------
Confidence 22334322 1 0 11
Q ss_pred CCCCcccCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcc
Q 003907 325 SSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCM 404 (787)
Q Consensus 325 s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~ 404 (787)
+.+++.|++|+|||+.+++++..|.+|.++|++++|+++|.+|+++|.|+ .|+|||+..
T Consensus 261 -----------------i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~-~i~vwd~~~--- 319 (456)
T KOG0266|consen 261 -----------------LVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASYDG-TIRVWDLET--- 319 (456)
T ss_pred -----------------EEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCCCc-cEEEEECCC---
Confidence 12456789999999999999999999999999999999999999998866 599999964
Q ss_pred cCCCCCCccccCCcceEEEEEecccccc-cEEEEEEccCCCEEEEEeCCCeEEEEeCCCCCCcccccccc
Q 003907 405 RSGSGNHKYDWNSSHVHLYKLHRGITSA-TIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQTLS 473 (787)
Q Consensus 405 ~~~~g~~~~~~~~s~~~l~~l~rG~~~a-~I~slaFSpDg~~LAs~S~dgTVhIwdl~~~gg~~~~~~H~ 473 (787)
+. ..++..+. +.... .+++++|+|++++|++++.|+++++|++...........|.
T Consensus 320 ----~~--------~~~~~~~~-~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~ 376 (456)
T KOG0266|consen 320 ----GS--------KLCLKLLS-GAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHS 376 (456)
T ss_pred ----Cc--------eeeeeccc-CCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccC
Confidence 20 00233443 33334 68999999999999999999999999999877777777774
No 32
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.75 E-value=6.7e-17 Score=183.63 Aligned_cols=263 Identities=15% Similarity=0.173 Sum_probs=181.8
Q ss_pred CCCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCceeEeeeeccCcEEEEEEecCCCCCCCCCCccccC
Q 003907 52 SEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLH 130 (787)
Q Consensus 52 ~~~~~~~v~wa~Fd~l~~~~~~~~~vL~lG~~~G-~qVWdv~~~~~~~ells~~dg~V~~v~~lP~P~~~~~~d~F~~sr 130 (787)
.-+..|+|+-.+|= ++ .-+.|+++++.+ +|+|++.. ..+. ++.+|+..|-.+... ...
T Consensus 319 ivG~ndEI~Dm~~l----G~--e~~~laVATNs~~lr~y~~~~-~~c~-ii~GH~e~vlSL~~~------------~~g- 377 (775)
T KOG0319|consen 319 IVGYNDEILDMKFL----GP--EESHLAVATNSPELRLYTLPT-SYCQ-IIPGHTEAVLSLDVW------------SSG- 377 (775)
T ss_pred hcCCchhheeeeec----CC--ccceEEEEeCCCceEEEecCC-CceE-EEeCchhheeeeeec------------ccC-
Confidence 34456667766662 22 346899999876 99999844 4454 999999999888732 222
Q ss_pred cEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCe----EEEEEeC-CCcEEEEEecC---
Q 003907 131 PFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHC----YEHVLRF-RSSVCMVRCSP--- 202 (787)
Q Consensus 131 pLLavV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~----~v~tL~f-~s~V~sV~~s~--- 202 (787)
-||+. |. .+++|+||-+..+. ++..... .+.|.+|+++.
T Consensus 378 ~llat--~s-------------------------------KD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~a 424 (775)
T KOG0319|consen 378 DLLAT--GS-------------------------------KDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGA 424 (775)
T ss_pred cEEEE--ec-------------------------------CCceEEEEEecCCcchhhhhhhhcccccccceeeecccCc
Confidence 25543 31 24799999773332 2333333 45899999976
Q ss_pred CeEE-EEeCCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCcceeccccCCCCC
Q 003907 203 RIVA-VGLATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSG 281 (787)
Q Consensus 203 ~~La-V~~~~~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~~~~~lAlspr~LAyas~~~~l~~~g~~s~q~lt~~~ 281 (787)
.+++ ++.|..|++|++..-+. +.+ +.-+-.++.+-+-
T Consensus 425 sffvsvS~D~tlK~W~l~~s~~-----~~~-----------------~~~~~~~~t~~aH-------------------- 462 (775)
T KOG0319|consen 425 SFFVSVSQDCTLKLWDLPKSKE-----TAF-----------------PIVLTCRYTERAH-------------------- 462 (775)
T ss_pred cEEEEecCCceEEEecCCCccc-----ccc-----------------cceehhhHHHHhh--------------------
Confidence 4555 45677899999865221 000 0011001100000
Q ss_pred cCCCcCCCCCceeEeeehhhhhhhhcccceeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECCCCcE
Q 003907 282 VSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAI 361 (787)
Q Consensus 282 ~s~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~ 361 (787)
+...+....++ +..-++++++|.+++||++...+.
T Consensus 463 -----------------------------------------dKdIN~Vaia~----ndkLiAT~SqDktaKiW~le~~~l 497 (775)
T KOG0319|consen 463 -----------------------------------------DKDINCVAIAP----NDKLIATGSQDKTAKIWDLEQLRL 497 (775)
T ss_pred -----------------------------------------cccccceEecC----CCceEEecccccceeeecccCceE
Confidence 00011111111 111245678899999999999999
Q ss_pred EEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEcc
Q 003907 362 ISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSH 441 (787)
Q Consensus 362 v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSp 441 (787)
+.+|.+|+..|.++.|+|..++|||+|.|. +|+||.+.+ . .++.+|. |++ +.|..++|-.
T Consensus 498 ~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~-TvKIW~is~-------f----------SClkT~e-GH~-~aVlra~F~~ 557 (775)
T KOG0319|consen 498 LGVLSGHTRGVWCVSFSKNDQLLATCSGDK-TVKIWSIST-------F----------SCLKTFE-GHT-SAVLRASFIR 557 (775)
T ss_pred EEEeeCCccceEEEEeccccceeEeccCCc-eEEEEEecc-------c----------eeeeeec-Ccc-ceeEeeeeee
Confidence 999999999999999999999999999955 599999965 2 4787875 544 5699999999
Q ss_pred CCCEEEEEeCCCeEEEEeCCCCCCccccccccCC
Q 003907 442 YSQWIAIVSSKGTCHVFVLSPFGGDSGFQTLSSQ 475 (787)
Q Consensus 442 Dg~~LAs~S~dgTVhIwdl~~~gg~~~~~~H~~~ 475 (787)
+|+.|.+++.||-++||++++..++.++..|+..
T Consensus 558 ~~~qliS~~adGliKlWnikt~eC~~tlD~H~Dr 591 (775)
T KOG0319|consen 558 NGKQLISAGADGLIKLWNIKTNECEMTLDAHNDR 591 (775)
T ss_pred CCcEEEeccCCCcEEEEeccchhhhhhhhhccce
Confidence 9999999999999999999999999999999754
No 33
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.73 E-value=1.7e-16 Score=182.52 Aligned_cols=274 Identities=16% Similarity=0.208 Sum_probs=186.6
Q ss_pred CCCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCceeEeeeeccCcEEEEEEecCCCCCCCCCCccccC
Q 003907 52 SEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLH 130 (787)
Q Consensus 52 ~~~~~~~v~wa~Fd~l~~~~~~~~~vL~lG~~~G-~qVWdv~~~~~~~ells~~dg~V~~v~~lP~P~~~~~~d~F~~sr 130 (787)
+|....+|.-..|. + .+-.++++--+| ||+||. -.+.+.+-+..|||||+.|.|-| .+
T Consensus 5 fEskSsRvKglsFH-----P--~rPwILtslHsG~IQlWDY-RM~tli~rFdeHdGpVRgv~FH~-------------~q 63 (1202)
T KOG0292|consen 5 FESKSSRVKGLSFH-----P--KRPWILTSLHSGVIQLWDY-RMGTLIDRFDEHDGPVRGVDFHP-------------TQ 63 (1202)
T ss_pred hhcccccccceecC-----C--CCCEEEEeecCceeeeehh-hhhhHHhhhhccCCccceeeecC-------------CC
Confidence 45556677777786 2 366888888888 899999 45778888999999999998765 46
Q ss_pred cEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCC-CcEEEEEecCC--eEEE
Q 003907 131 PFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFR-SSVCMVRCSPR--IVAV 207 (787)
Q Consensus 131 pLLavV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~v~tL~f~-s~V~sV~~s~~--~LaV 207 (787)
||. |+|++ +-+|++|+.++.+++-+|..| .-|+.+.|.+. .++.
T Consensus 64 plF--VSGGD-------------------------------DykIkVWnYk~rrclftL~GHlDYVRt~~FHheyPWIlS 110 (1202)
T KOG0292|consen 64 PLF--VSGGD-------------------------------DYKIKVWNYKTRRCLFTLLGHLDYVRTVFFHHEYPWILS 110 (1202)
T ss_pred CeE--EecCC-------------------------------ccEEEEEecccceehhhhccccceeEEeeccCCCceEEE
Confidence 776 45433 259999999999999999866 68999999883 5555
Q ss_pred Ee-CCeEEEEECCCCceeEEEEecCCcccCCCCccccccccce-eEEcc--ceEEEecCCceecCcceeccccCCCCCcC
Q 003907 208 GL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGP-MAVGP--RWLAYASNTLLLSNSGRLSPQNLTPSGVS 283 (787)
Q Consensus 208 ~~-~~~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~~~~~-lAlsp--r~LAyas~~~~l~~~g~~s~q~lt~~~~s 283 (787)
+. |++|+||+-++.+++..+.+|.. |.- ..|.| ..+++++-+. .+..|+.
T Consensus 111 ASDDQTIrIWNwqsr~~iavltGHnH--------------YVMcAqFhptEDlIVSaSLDQ-----TVRVWDi------- 164 (1202)
T KOG0292|consen 111 ASDDQTIRIWNWQSRKCIAVLTGHNH--------------YVMCAQFHPTEDLIVSASLDQ-----TVRVWDI------- 164 (1202)
T ss_pred ccCCCeEEEEeccCCceEEEEecCce--------------EEEeeccCCccceEEEecccc-----eEEEEee-------
Confidence 55 55699999999999999988754 211 23445 4555554321 1222432
Q ss_pred CCcCCCCCceeEeeehhhhhhhhcccceeecccccccCCCCCCCCcccCCccccccccc---cccCCCceEEEEECCCCc
Q 003907 284 PSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAG---ADMDNAGIVVVKDFVTRA 360 (787)
Q Consensus 284 ~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~---~s~~~dG~V~IwDl~s~~ 360 (787)
+|+.|+ ..+++ +... .+.+.++ ..+..|-.
T Consensus 165 -----------------------sGLRkk-------~~~pg-----~~e~--~~~~~~~~~dLfg~~DaV---------- 197 (1202)
T KOG0292|consen 165 -----------------------SGLRKK-------NKAPG-----SLED--QMRGQQGNSDLFGQTDAV---------- 197 (1202)
T ss_pred -----------------------cchhcc-------CCCCC-----Cchh--hhhccccchhhcCCcCee----------
Confidence 111100 00000 0000 0000000 01112222
Q ss_pred EEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEc
Q 003907 361 IISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFS 440 (787)
Q Consensus 361 ~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFS 440 (787)
+...+.+|+..|+.++|+|.--++++|++ |+.|++|..... ..+.+-++ ||+. ..|.++-|.
T Consensus 198 VK~VLEGHDRGVNwaAfhpTlpliVSG~D-DRqVKlWrmnet---------------KaWEvDtc-rgH~-nnVssvlfh 259 (1202)
T KOG0292|consen 198 VKHVLEGHDRGVNWAAFHPTLPLIVSGAD-DRQVKLWRMNET---------------KAWEVDTC-RGHY-NNVSSVLFH 259 (1202)
T ss_pred eeeeecccccccceEEecCCcceEEecCC-cceeeEEEeccc---------------cceeehhh-hccc-CCcceEEec
Confidence 23457899999999999999999999988 778999998431 11333333 6754 469999999
Q ss_pred cCCCEEEEEeCCCeEEEEeCCCCCCccccc
Q 003907 441 HYSQWIAIVSSKGTCHVFVLSPFGGDSGFQ 470 (787)
Q Consensus 441 pDg~~LAs~S~dgTVhIwdl~~~gg~~~~~ 470 (787)
|....|.+.|.|++|+|||++...+..+|+
T Consensus 260 p~q~lIlSnsEDksirVwDm~kRt~v~tfr 289 (1202)
T KOG0292|consen 260 PHQDLILSNSEDKSIRVWDMTKRTSVQTFR 289 (1202)
T ss_pred CccceeEecCCCccEEEEecccccceeeee
Confidence 999999999999999999999877776664
No 34
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=99.73 E-value=1.5e-16 Score=182.33 Aligned_cols=184 Identities=14% Similarity=0.149 Sum_probs=141.2
Q ss_pred EEEEECCCCeEEEEEeCC-CcEEEEEecC--CeEEEEeC-CeEEEEECCCCceeEEEEecCCcccCCCCcccccccccee
Q 003907 175 VRFYSFQSHCYEHVLRFR-SSVCMVRCSP--RIVAVGLA-TQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPM 250 (787)
Q Consensus 175 VrlWdlktg~~v~tL~f~-s~V~sV~~s~--~~LaV~~~-~~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~~~~~l 250 (787)
+..-|..+.....+|-.| ++|+.++|+| ++|+.+.+ ..|++|.+.|..++-...+|-.| +.-+
T Consensus 433 ~~~~D~~~~~~~~~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~P-------------VwdV 499 (707)
T KOG0263|consen 433 VDMLDDDSSGTSRTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAP-------------VWDV 499 (707)
T ss_pred hhhccccCCceeEEeecCCCceeeeeecccccceeeccCCcceeeeecccceeEEEecCCCcc-------------eeeE
Confidence 444455444445555444 6999999998 67777765 57999999998877776666554 1223
Q ss_pred EEccceEEEecCCceecCcceeccccCCCCCcCCCcCCCCCceeEeeehhhhhhhhcccceeecccccccCCCCCCCCcc
Q 003907 251 AVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVS 330 (787)
Q Consensus 251 Alspr~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~~s 330 (787)
.|+|+
T Consensus 500 ~F~P~--------------------------------------------------------------------------- 504 (707)
T KOG0263|consen 500 QFAPR--------------------------------------------------------------------------- 504 (707)
T ss_pred EecCC---------------------------------------------------------------------------
Confidence 33332
Q ss_pred cCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCC
Q 003907 331 PNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGN 410 (787)
Q Consensus 331 ~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~ 410 (787)
+..+++++.|++.++|......+++.|.+|-+.|.|++|+|+..|+||+|. ++++|+||+.+ |
T Consensus 505 --------GyYFatas~D~tArLWs~d~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSs-D~tVRlWDv~~-------G- 567 (707)
T KOG0263|consen 505 --------GYYFATASHDQTARLWSTDHNKPLRIFAGHLSDVDCVSFHPNSNYVATGSS-DRTVRLWDVST-------G- 567 (707)
T ss_pred --------ceEEEecCCCceeeeeecccCCchhhhcccccccceEEECCcccccccCCC-CceEEEEEcCC-------C-
Confidence 112334567889999999999999999999999999999999999999998 66799999976 4
Q ss_pred CccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEeCCCCCCccccccccC
Q 003907 411 HKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQTLSS 474 (787)
Q Consensus 411 ~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~~~gg~~~~~~H~~ 474 (787)
..+..| +| |.+.|.+|+|||+|+|||+|+.||.|+|||+....-...+.+|+.
T Consensus 568 ---------~~VRiF-~G-H~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~ 620 (707)
T KOG0263|consen 568 ---------NSVRIF-TG-HKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQLKGHTG 620 (707)
T ss_pred ---------cEEEEe-cC-CCCceEEEEEcCCCceEeecccCCcEEEEEcCCCcchhhhhcccC
Confidence 233333 57 457899999999999999999999999999987666667888853
No 35
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.72 E-value=1.5e-16 Score=168.46 Aligned_cols=216 Identities=15% Similarity=0.181 Sum_probs=159.2
Q ss_pred CceeEeeeeccCcEEEEEEecCCCCCCCCCCccccCcEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCE
Q 003907 95 SNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTA 174 (787)
Q Consensus 95 ~~~~ells~~dg~V~~v~~lP~P~~~~~~d~F~~srpLLavV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~t 174 (787)
-++..++++|-|+|++|.+-|. + ..++. +. .+++
T Consensus 141 wKl~rVi~gHlgWVr~vavdP~------------n-~wf~t--gs-------------------------------~Drt 174 (460)
T KOG0285|consen 141 WKLYRVISGHLGWVRSVAVDPG------------N-EWFAT--GS-------------------------------ADRT 174 (460)
T ss_pred ceehhhhhhccceEEEEeeCCC------------c-eeEEe--cC-------------------------------CCce
Confidence 3456778899999999999873 1 25533 21 2479
Q ss_pred EEEEECCCCeEEEEEeC-CCcEEEEEecCC---eEEEEeCCeEEEEECCCCceeEEEEecCCcccCCCCcccccccccee
Q 003907 175 VRFYSFQSHCYEHVLRF-RSSVCMVRCSPR---IVAVGLATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPM 250 (787)
Q Consensus 175 VrlWdlktg~~v~tL~f-~s~V~sV~~s~~---~LaV~~~~~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~~~~~l 250 (787)
++|||+.+|++..+|.. -+.|..|+++++ ++.++.+.+|+|||+..-+.+....+|-.. +-.+
T Consensus 175 ikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~nkvIR~YhGHlS~-------------V~~L 241 (460)
T KOG0285|consen 175 IKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEYNKVIRHYHGHLSG-------------VYCL 241 (460)
T ss_pred eEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEEechhhhhHHHhccccce-------------eEEE
Confidence 99999999999999984 479999999873 455566778999999887765554444321 1122
Q ss_pred EEccceEEEecCCceecCcceeccccCCCCCcCCCcCCCCCceeEeeehhhhhhhhcccceeecccccccCCCCCCCCcc
Q 003907 251 AVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVS 330 (787)
Q Consensus 251 Alspr~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~~s 330 (787)
++.| ..+
T Consensus 242 ~lhP------Tld------------------------------------------------------------------- 248 (460)
T KOG0285|consen 242 DLHP------TLD------------------------------------------------------------------- 248 (460)
T ss_pred eccc------cce-------------------------------------------------------------------
Confidence 2211 100
Q ss_pred cCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCC
Q 003907 331 PNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGN 410 (787)
Q Consensus 331 ~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~ 410 (787)
.+.+++.|.+++|||+++...+..|.+|+.+|..+.|.|-.-.++|||.|++ ||+||+.. |
T Consensus 249 ----------vl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~t-vrlWDl~a-------g- 309 (460)
T KOG0285|consen 249 ----------VLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSHDST-VRLWDLRA-------G- 309 (460)
T ss_pred ----------eEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEecCCce-EEEeeecc-------C-
Confidence 0124456889999999999999999999999999999998888999999665 99999964 3
Q ss_pred CccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEeCCCCCCcccccccc
Q 003907 411 HKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQTLS 473 (787)
Q Consensus 411 ~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~~~gg~~~~~~H~ 473 (787)
+-...+. ++...|.+++..|+-..+|++|.|. ++-|++....-..++..|+
T Consensus 310 ---------kt~~tlt--~hkksvral~lhP~e~~fASas~dn-ik~w~~p~g~f~~nlsgh~ 360 (460)
T KOG0285|consen 310 ---------KTMITLT--HHKKSVRALCLHPKENLFASASPDN-IKQWKLPEGEFLQNLSGHN 360 (460)
T ss_pred ---------ceeEeee--cccceeeEEecCCchhhhhccCCcc-ceeccCCccchhhcccccc
Confidence 2333443 2334699999999999999998875 8899987655556677775
No 36
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=99.72 E-value=2.3e-15 Score=156.40 Aligned_cols=223 Identities=13% Similarity=0.111 Sum_probs=170.3
Q ss_pred CCeEEEEEecCc-EEEEEccCC--C---ceeEeeeeccCcEEEEEEecCCCCCCCCCCccccCcEEEEEEcCCCCCCCCC
Q 003907 74 FKQVLLLGYQNG-FQVLDVEDA--S---NFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPG 147 (787)
Q Consensus 74 ~~~vL~lG~~~G-~qVWdv~~~--~---~~~ells~~dg~V~~v~~lP~P~~~~~~d~F~~srpLLavV~~d~~~~~~~~ 147 (787)
.++.+++|.-+- --||++... . .+.+.|..|.|-+++.+++++- .|+. + +|
T Consensus 108 Sg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~--------------~ilT--~-----SG-- 164 (343)
T KOG0286|consen 108 SGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDN--------------HILT--G-----SG-- 164 (343)
T ss_pred CCCeEEecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcCCC--------------ceEe--c-----CC--
Confidence 478888887655 689999632 1 3455688899999999999531 2333 2 11
Q ss_pred CCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCC-CcEEEEEecC---CeEEE-EeCCeEEEEECCCCc
Q 003907 148 QNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFR-SSVCMVRCSP---RIVAV-GLATQIYCFDALTLE 222 (787)
Q Consensus 148 ~~~~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~v~tL~f~-s~V~sV~~s~---~~LaV-~~~~~I~iwD~~T~e 222 (787)
+.|..+||+.+|+.+..+..| +-|.++++.| +.++. +.+...++||++.+.
T Consensus 165 ------------------------D~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~ 220 (343)
T KOG0286|consen 165 ------------------------DMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQ 220 (343)
T ss_pred ------------------------CceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcc
Confidence 258999999999999999866 5899999977 66666 457789999999999
Q ss_pred eeEEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCcceeccccCCCCCcCCCcCCCCCceeEeeehhhh
Q 003907 223 NKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHS 302 (787)
Q Consensus 223 ~l~tl~t~p~p~~~~~~~~~~~~~~~~lAlspr~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~sp~~g~lva~~a~d~s 302 (787)
+.+++.+|..- .+.+.|-|.-
T Consensus 221 c~qtF~ghesD-------------INsv~ffP~G---------------------------------------------- 241 (343)
T KOG0286|consen 221 CVQTFEGHESD-------------INSVRFFPSG---------------------------------------------- 241 (343)
T ss_pred eeEeecccccc-------------cceEEEccCC----------------------------------------------
Confidence 99999887652 2344442210
Q ss_pred hhhhcccceeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECCCCcEEEEecc--CCCCeEEEEECCC
Q 003907 303 KQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKA--HTSPISALCFDPS 380 (787)
Q Consensus 303 k~la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~v~~~~a--H~~pIsaLaFSpd 380 (787)
..+++++.|+++++||++..+.+..+.. -..+|++++||.+
T Consensus 242 -------------------------------------~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~S 284 (343)
T KOG0286|consen 242 -------------------------------------DAFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSKS 284 (343)
T ss_pred -------------------------------------CeeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEccc
Confidence 0123567799999999999998888863 2458999999999
Q ss_pred CCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEe
Q 003907 381 GTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFV 459 (787)
Q Consensus 381 G~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~LAs~S~dgTVhIwd 459 (787)
|++|..+-.|. .+.|||... + ++.-.|. |+ ...|.+|..+|||.-|+++|-|.+++||.
T Consensus 285 GRlLfagy~d~-~c~vWDtlk-------~----------e~vg~L~-GH-eNRvScl~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 285 GRLLFAGYDDF-TCNVWDTLK-------G----------ERVGVLA-GH-ENRVSCLGVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred ccEEEeeecCC-ceeEeeccc-------c----------ceEEEee-cc-CCeeEEEEECCCCcEEEecchhHheeecC
Confidence 99999887755 599999864 2 4555664 54 35799999999999999999999999994
No 37
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.71 E-value=7.5e-16 Score=158.00 Aligned_cols=242 Identities=18% Similarity=0.200 Sum_probs=173.8
Q ss_pred CCCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCceeEe-eeeccCcEEEEEEecCCCCCCCCCCcccc
Q 003907 52 SEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNEL-VSKRDGPVSFLQMQPFPVKDDGCEGFRKL 129 (787)
Q Consensus 52 ~~~~~~~v~wa~Fd~l~~~~~~~~~vL~lG~~~G-~qVWdv~~~~~~~el-ls~~dg~V~~v~~lP~P~~~~~~d~F~~s 129 (787)
..++..+|.-+.|+- ++.-|+.|.-++ +.||+++...-..++ ..+|.+.|..+.+.|. .
T Consensus 16 ~~~~~~~v~Sv~wn~-------~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~------------~ 76 (313)
T KOG1407|consen 16 LQGHVQKVHSVAWNC-------DGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPK------------H 76 (313)
T ss_pred hhhhhhcceEEEEcc-------cCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCC------------C
Confidence 566788899999974 366788888776 799999875433333 4566678888887763 2
Q ss_pred CcEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCCcEEEEEecC--CeEEE
Q 003907 130 HPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRSSVCMVRCSP--RIVAV 207 (787)
Q Consensus 130 rpLLavV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~v~tL~f~s~V~sV~~s~--~~LaV 207 (787)
.++++++++| ++|++||.+++++++.+.-...=..+.++| ..+++
T Consensus 77 ~d~~atas~d---------------------------------k~ir~wd~r~~k~~~~i~~~~eni~i~wsp~g~~~~~ 123 (313)
T KOG1407|consen 77 PDLFATASGD---------------------------------KTIRIWDIRSGKCTARIETKGENINITWSPDGEYIAV 123 (313)
T ss_pred CcceEEecCC---------------------------------ceEEEEEeccCcEEEEeeccCcceEEEEcCCCCEEEE
Confidence 3477765532 689999999999999998887666778887 56666
Q ss_pred Ee-CCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCcceeccccCCCCCcCCCc
Q 003907 208 GL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPST 286 (787)
Q Consensus 208 ~~-~~~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~~~~~lAlspr~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~ 286 (787)
+. ++.|.++|+++.+...+.. .+ + . .+.+++. -+++..
T Consensus 124 ~~kdD~it~id~r~~~~~~~~~---~~------~-e----~ne~~w~------~~nd~F--------------------- 162 (313)
T KOG1407|consen 124 GNKDDRITFIDARTYKIVNEEQ---FK------F-E----VNEISWN------NSNDLF--------------------- 162 (313)
T ss_pred ecCcccEEEEEecccceeehhc---cc------c-e----eeeeeec------CCCCEE---------------------
Confidence 55 6689999998876433321 11 0 0 0112210 000000
Q ss_pred CCCCCceeEeeehhhhhhhhcccceeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECCCCcEEEEec
Q 003907 287 SPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFK 366 (787)
Q Consensus 287 sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~v~~~~ 366 (787)
.-....|.|.|......+++..|+
T Consensus 163 --------------------------------------------------------flt~GlG~v~ILsypsLkpv~si~ 186 (313)
T KOG1407|consen 163 --------------------------------------------------------FLTNGLGCVEILSYPSLKPVQSIK 186 (313)
T ss_pred --------------------------------------------------------EEecCCceEEEEeccccccccccc
Confidence 001124789999999999999999
Q ss_pred cCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEE
Q 003907 367 AHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWI 446 (787)
Q Consensus 367 aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~L 446 (787)
+|....-||.|+|+|++||+||. +-.+-+||+... .++..+.|- ...|..|+||.||++|
T Consensus 187 AH~snCicI~f~p~GryfA~GsA-DAlvSLWD~~EL-----------------iC~R~isRl--dwpVRTlSFS~dg~~l 246 (313)
T KOG1407|consen 187 AHPSNCICIEFDPDGRYFATGSA-DALVSLWDVDEL-----------------ICERCISRL--DWPVRTLSFSHDGRML 246 (313)
T ss_pred cCCcceEEEEECCCCceEeeccc-cceeeccChhHh-----------------hhheeeccc--cCceEEEEeccCccee
Confidence 99999999999999999999999 557999998532 244444442 2469999999999999
Q ss_pred EEEeCCCeEEEEeCCC
Q 003907 447 AIVSSKGTCHVFVLSP 462 (787)
Q Consensus 447 As~S~dgTVhIwdl~~ 462 (787)
|++|.|..|-|=.+++
T Consensus 247 ASaSEDh~IDIA~vet 262 (313)
T KOG1407|consen 247 ASASEDHFIDIAEVET 262 (313)
T ss_pred eccCccceEEeEeccc
Confidence 9999998888766665
No 38
>PTZ00421 coronin; Provisional
Probab=99.71 E-value=6.6e-15 Score=169.65 Aligned_cols=222 Identities=14% Similarity=0.118 Sum_probs=151.4
Q ss_pred CcEEEEEccCCCceeE---eeeeccCcEEEEEEecCCCCCCCCCCccccCcEEEEEEcCCCCCCCCCCCcCCCCCcccCC
Q 003907 84 NGFQVLDVEDASNFNE---LVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGM 160 (787)
Q Consensus 84 ~G~qVWdv~~~~~~~e---lls~~dg~V~~v~~lP~P~~~~~~d~F~~srpLLavV~~d~~~~~~~~~~~~~~~~~r~g~ 160 (787)
+|+.|+.++..|.... ++.+|.++|..+++.| |... +||..+ +
T Consensus 51 gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP----------~d~~--~LaSgS-~--------------------- 96 (493)
T PTZ00421 51 GSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNP----------FDPQ--KLFTAS-E--------------------- 96 (493)
T ss_pred CceEEeeccccccCCCCCceEeCCCCCEEEEEEcC----------CCCC--EEEEEe-C---------------------
Confidence 3455555555554433 5778999999999987 2222 565422 1
Q ss_pred cCCCCCCCCCCCCEEEEEECCCC-------eEEEEEeCC-CcEEEEEecC---CeEEEEe-CCeEEEEECCCCceeEEEE
Q 003907 161 MDSQSGNCVNSPTAVRFYSFQSH-------CYEHVLRFR-SSVCMVRCSP---RIVAVGL-ATQIYCFDALTLENKFSVL 228 (787)
Q Consensus 161 ~~~~~~~~~~~p~tVrlWdlktg-------~~v~tL~f~-s~V~sV~~s~---~~LaV~~-~~~I~iwD~~T~e~l~tl~ 228 (787)
+++|++||+.++ +.+.++..+ ..|..|+|++ ++|+++. ++.|+|||+.+++.+.++.
T Consensus 97 -----------DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~ 165 (493)
T PTZ00421 97 -----------DGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIK 165 (493)
T ss_pred -----------CCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEc
Confidence 368999999765 346677655 5899999987 4677654 6789999999998877776
Q ss_pred ecCCcccCCCCccccccccceeEEccceEEEecCCceecCcceeccccCCCCCcCCCcCCCCCceeEeeehhhhhhhhcc
Q 003907 229 TYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAG 308 (787)
Q Consensus 229 t~p~p~~~~~~~~~~~~~~~~lAlspr~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~sp~~g~lva~~a~d~sk~la~G 308 (787)
.|..+ ...++++| +. .
T Consensus 166 ~h~~~-------------V~sla~sp-------dG----------------------------~---------------- 181 (493)
T PTZ00421 166 CHSDQ-------------ITSLEWNL-------DG----------------------------S---------------- 181 (493)
T ss_pred CCCCc-------------eEEEEEEC-------CC----------------------------C----------------
Confidence 65542 22333322 10 0
Q ss_pred cceeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCe-EEEEECCCCCEEEEE
Q 003907 309 LSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPI-SALCFDPSGTLLVTA 387 (787)
Q Consensus 309 ~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~v~~~~aH~~pI-saLaFSpdG~lLATa 387 (787)
.++++..||+|+|||+++++.+..+.+|.+.+ ..+.|.+++.+|+|+
T Consensus 182 --------------------------------lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~ 229 (493)
T PTZ00421 182 --------------------------------LLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITL 229 (493)
T ss_pred --------------------------------EEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEE
Confidence 01234568999999999999999999998754 567899998888876
Q ss_pred Ec---CCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEe-CCCeEEEEeCCCC
Q 003907 388 SV---YGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVS-SKGTCHVFVLSPF 463 (787)
Q Consensus 388 S~---dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~LAs~S-~dgTVhIwdl~~~ 463 (787)
+. .++.|+|||++.. . ..+.... ......+....|++|+++|++++ .|++|++|++...
T Consensus 230 G~s~s~Dr~VklWDlr~~------~----------~p~~~~~-~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~ 292 (493)
T PTZ00421 230 GCSKSQQRQIMLWDTRKM------A----------SPYSTVD-LDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNE 292 (493)
T ss_pred ecCCCCCCeEEEEeCCCC------C----------CceeEec-cCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCC
Confidence 53 2456999998531 1 1222221 11223466678999999999988 5999999999753
No 39
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.71 E-value=1.3e-15 Score=166.91 Aligned_cols=236 Identities=19% Similarity=0.253 Sum_probs=168.8
Q ss_pred CCCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCceeEeeeeccCcEEEEEEecCCCCCCCCCCccccC
Q 003907 52 SEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLH 130 (787)
Q Consensus 52 ~~~~~~~v~wa~Fd~l~~~~~~~~~vL~lG~~~G-~qVWdv~~~~~~~ells~~dg~V~~v~~lP~P~~~~~~d~F~~sr 130 (787)
..--++.|.-+.|-+ ++++|+.|...| +||||. ........+..|..||..++|.|. ++
T Consensus 64 ~srFk~~v~s~~fR~-------DG~LlaaGD~sG~V~vfD~-k~r~iLR~~~ah~apv~~~~f~~~-----------d~- 123 (487)
T KOG0310|consen 64 FSRFKDVVYSVDFRS-------DGRLLAAGDESGHVKVFDM-KSRVILRQLYAHQAPVHVTKFSPQ-----------DN- 123 (487)
T ss_pred HHhhccceeEEEeec-------CCeEEEccCCcCcEEEecc-ccHHHHHHHhhccCceeEEEeccc-----------CC-
Confidence 344678888888865 488999999988 899995 444455667889999999999863 22
Q ss_pred cEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCC-CcEEEEEecC---CeEE
Q 003907 131 PFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFR-SSVCMVRCSP---RIVA 206 (787)
Q Consensus 131 pLLavV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~v~tL~f~-s~V~sV~~s~---~~La 206 (787)
.++ ++|++ +.++++||+.+...+.++..+ ..|.+.++++ .+++
T Consensus 124 -t~l-~s~sD-------------------------------d~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivv 170 (487)
T KOG0310|consen 124 -TML-VSGSD-------------------------------DKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVV 170 (487)
T ss_pred -eEE-EecCC-------------------------------CceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEE
Confidence 333 34543 369999999998876567655 5899999987 3677
Q ss_pred EE-eCCeEEEEECCCC-ceeEEEEecCCcccCCCCccccccccceeEEcc-ceEEEecCCceecCcceeccccCCCCCcC
Q 003907 207 VG-LATQIYCFDALTL-ENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP-RWLAYASNTLLLSNSGRLSPQNLTPSGVS 283 (787)
Q Consensus 207 V~-~~~~I~iwD~~T~-e~l~tl~t~p~p~~~~~~~~~~~~~~~~lAlsp-r~LAyas~~~~l~~~g~~s~q~lt~~~~s 283 (787)
+| +|+.|++||+++. ....++. |..|. -..+++.+ ..+|.+
T Consensus 171 tGsYDg~vrl~DtR~~~~~v~eln-hg~pV------------e~vl~lpsgs~iasA----------------------- 214 (487)
T KOG0310|consen 171 TGSYDGKVRLWDTRSLTSRVVELN-HGCPV------------ESVLALPSGSLIASA----------------------- 214 (487)
T ss_pred ecCCCceEEEEEeccCCceeEEec-CCCce------------eeEEEcCCCCEEEEc-----------------------
Confidence 65 5778999998876 3334433 22220 01233321 111111
Q ss_pred CCcCCCCCceeEeeehhhhhhhhcccceeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECCCC-cEE
Q 003907 284 PSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTR-AII 362 (787)
Q Consensus 284 ~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~-~~v 362 (787)
....|+|||+.+| +.+
T Consensus 215 ---------------------------------------------------------------gGn~vkVWDl~~G~qll 231 (487)
T KOG0310|consen 215 ---------------------------------------------------------------GGNSVKVWDLTTGGQLL 231 (487)
T ss_pred ---------------------------------------------------------------CCCeEEEEEecCCceeh
Confidence 1236999999955 555
Q ss_pred EEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccC
Q 003907 363 SQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHY 442 (787)
Q Consensus 363 ~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpD 442 (787)
..+..|...|+||++..+++.|.|+|-|++ ++|||+... ..++.+. -.+.|.+|+.|||
T Consensus 232 ~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~-VKVfd~t~~-----------------Kvv~s~~---~~~pvLsiavs~d 290 (487)
T KOG0310|consen 232 TSMFNHNKTVTCLRLASDSTRLLSGSLDRH-VKVFDTTNY-----------------KVVHSWK---YPGPVLSIAVSPD 290 (487)
T ss_pred hhhhcccceEEEEEeecCCceEeecccccc-eEEEEccce-----------------EEEEeee---cccceeeEEecCC
Confidence 566669999999999999999999999887 999997431 2333332 2357999999999
Q ss_pred CCEEEEEeCCCeEEEEeC
Q 003907 443 SQWIAIVSSKGTCHVFVL 460 (787)
Q Consensus 443 g~~LAs~S~dgTVhIwdl 460 (787)
++.+++|-.+|.+-+-+.
T Consensus 291 d~t~viGmsnGlv~~rr~ 308 (487)
T KOG0310|consen 291 DQTVVIGMSNGLVSIRRR 308 (487)
T ss_pred CceEEEecccceeeeehh
Confidence 999999999999877643
No 40
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.71 E-value=1.5e-16 Score=162.10 Aligned_cols=198 Identities=21% Similarity=0.306 Sum_probs=151.2
Q ss_pred CCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCceeEeeeeccCcEEEEEEecCCCCCCCCCCccccCc
Q 003907 53 EDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHP 131 (787)
Q Consensus 53 ~~~~~~v~wa~Fd~l~~~~~~~~~vL~lG~~~G-~qVWdv~~~~~~~ells~~dg~V~~v~~lP~P~~~~~~d~F~~srp 131 (787)
-.||--|.-+.|++ | -+.|++|...- +||||++....-.+-+++|.|.|+.+.++- .++
T Consensus 97 f~hkhivk~~af~~----d---s~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~-----------eD~-- 156 (334)
T KOG0278|consen 97 FEHKHIVKAVAFSQ----D---SNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCH-----------EDK-- 156 (334)
T ss_pred hhhhheeeeEEecc----c---chhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEec-----------cCc--
Confidence 34778899999987 3 34677776655 799999776655666889999999998872 222
Q ss_pred EEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCCcEEEEEecC--CeEEEEe
Q 003907 132 FLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRSSVCMVRCSP--RIVAVGL 209 (787)
Q Consensus 132 LLavV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~v~tL~f~s~V~sV~~s~--~~LaV~~ 209 (787)
.++. +.+ +++||+||.++|+.+++|+|+++|.++..++ ++|.++.
T Consensus 157 ~iLS-Sad--------------------------------d~tVRLWD~rTgt~v~sL~~~s~VtSlEvs~dG~ilTia~ 203 (334)
T KOG0278|consen 157 CILS-SAD--------------------------------DKTVRLWDHRTGTEVQSLEFNSPVTSLEVSQDGRILTIAY 203 (334)
T ss_pred eEEe-ecc--------------------------------CCceEEEEeccCcEEEEEecCCCCcceeeccCCCEEEEec
Confidence 3332 222 3799999999999999999999999988877 7888999
Q ss_pred CCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCcceeccccCCCCCcCCCcCCC
Q 003907 210 ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPG 289 (787)
Q Consensus 210 ~~~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~~~~~lAlspr~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~sp~ 289 (787)
...|.+||+.++++++... .|. + +...+|.| .
T Consensus 204 gssV~Fwdaksf~~lKs~k---~P~---------n--V~SASL~P----------------------------------~ 235 (334)
T KOG0278|consen 204 GSSVKFWDAKSFGLLKSYK---MPC---------N--VESASLHP----------------------------------K 235 (334)
T ss_pred CceeEEeccccccceeecc---Ccc---------c--cccccccC----------------------------------C
Confidence 8999999999998766554 220 0 01111111 1
Q ss_pred CCceeEeeehhhhhhhhcccceeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECCCCcEEEEe-ccC
Q 003907 290 GSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQF-KAH 368 (787)
Q Consensus 290 ~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~v~~~-~aH 368 (787)
.+.+ ..+..|+.+..||..++..+..+ ++|
T Consensus 236 k~~f-------------------------------------------------VaGged~~~~kfDy~TgeEi~~~nkgh 266 (334)
T KOG0278|consen 236 KEFF-------------------------------------------------VAGGEDFKVYKFDYNTGEEIGSYNKGH 266 (334)
T ss_pred CceE-------------------------------------------------EecCcceEEEEEeccCCceeeecccCC
Confidence 1111 12457889999999999988886 899
Q ss_pred CCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCC
Q 003907 369 TSPISALCFDPSGTLLVTASVYGNNINIFRIMP 401 (787)
Q Consensus 369 ~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~ 401 (787)
-+||.|+.|+|||.+-|++|+||+ ||||.+.+
T Consensus 267 ~gpVhcVrFSPdGE~yAsGSEDGT-irlWQt~~ 298 (334)
T KOG0278|consen 267 FGPVHCVRFSPDGELYASGSEDGT-IRLWQTTP 298 (334)
T ss_pred CCceEEEEECCCCceeeccCCCce-EEEEEecC
Confidence 999999999999999999999886 99999865
No 41
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.71 E-value=1.5e-15 Score=175.87 Aligned_cols=242 Identities=19% Similarity=0.189 Sum_probs=185.0
Q ss_pred cCCCCCCCcEEEEEEeeccCCCCCCCeEEEEEecC-cEEEEEccCCCceeEeeeeccCcEEEEEEecCCCCCCCCCCccc
Q 003907 50 NASEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQN-GFQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRK 128 (787)
Q Consensus 50 ~~~~~~~~~v~wa~Fd~l~~~~~~~~~vL~lG~~~-G~qVWdv~~~~~~~ells~~dg~V~~v~~lP~P~~~~~~d~F~~ 128 (787)
...++|++.|--..|.+ ....|++|..+ .++|||+ ..|++..++.+|.+.|+++.+.+
T Consensus 243 ~~l~GH~g~V~~l~~~~-------~~~~lvsgS~D~t~rvWd~-~sg~C~~~l~gh~stv~~~~~~~------------- 301 (537)
T KOG0274|consen 243 TRLVGHFGGVWGLAFPS-------GGDKLVSGSTDKTERVWDC-STGECTHSLQGHTSSVRCLTIDP------------- 301 (537)
T ss_pred eeccCCCCCceeEEEec-------CCCEEEEEecCCcEEeEec-CCCcEEEEecCCCceEEEEEccC-------------
Confidence 34788888888777764 13478888865 6999997 56999999999999999998774
Q ss_pred cCcEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEe-CCCcEEEEEecCCeEEE
Q 003907 129 LHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLR-FRSSVCMVRCSPRIVAV 207 (787)
Q Consensus 129 srpLLavV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~v~tL~-f~s~V~sV~~s~~~LaV 207 (787)
.+. ++| + -|++|++|++.++.+++++. +..+|.+|.++..+|++
T Consensus 302 ---~~~-~sg-----s--------------------------~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~~~~lvs 346 (537)
T KOG0274|consen 302 ---FLL-VSG-----S--------------------------RDNTVKVWDVTNGACLNLLRGHTGPVNCVQLDEPLLVS 346 (537)
T ss_pred ---ceE-eec-----c--------------------------CCceEEEEeccCcceEEEeccccccEEEEEecCCEEEE
Confidence 222 232 1 24799999999999999999 67899999999987777
Q ss_pred Ee-CCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCcceeccccCCCCCcCCCc
Q 003907 208 GL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPST 286 (787)
Q Consensus 208 ~~-~~~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~~~~~lAlspr~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~ 286 (787)
+. +..|.+||+.++++++++.+|... +..+.+ .+...
T Consensus 347 gs~d~~v~VW~~~~~~cl~sl~gH~~~-------------V~sl~~-------~~~~~---------------------- 384 (537)
T KOG0274|consen 347 GSYDGTVKVWDPRTGKCLKSLSGHTGR-------------VYSLIV-------DSENR---------------------- 384 (537)
T ss_pred EecCceEEEEEhhhceeeeeecCCcce-------------EEEEEe-------cCcce----------------------
Confidence 54 567999999999999999987663 112222 21000
Q ss_pred CCCCCceeEeeehhhhhhhhcccceeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECCCC-cEEEEe
Q 003907 287 SPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTR-AIISQF 365 (787)
Q Consensus 287 sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~-~~v~~~ 365 (787)
..+++.|++|++||+.++ +++.++
T Consensus 385 -------------------------------------------------------~~Sgs~D~~IkvWdl~~~~~c~~tl 409 (537)
T KOG0274|consen 385 -------------------------------------------------------LLSGSLDTTIKVWDLRTKRKCIHTL 409 (537)
T ss_pred -------------------------------------------------------EEeeeeccceEeecCCchhhhhhhh
Confidence 012356789999999999 999999
Q ss_pred ccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCE
Q 003907 366 KAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQW 445 (787)
Q Consensus 366 ~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~ 445 (787)
.+|..-+..+.+ .+++|++++.|++ |++||+.. + .++.++... +...|..+++. ...
T Consensus 410 ~~h~~~v~~l~~--~~~~Lvs~~aD~~-Ik~WD~~~-------~----------~~~~~~~~~-~~~~v~~l~~~--~~~ 466 (537)
T KOG0274|consen 410 QGHTSLVSSLLL--RDNFLVSSSADGT-IKLWDAEE-------G----------ECLRTLEGR-HVGGVSALALG--KEE 466 (537)
T ss_pred cCCccccccccc--ccceeEecccccc-EEEeeccc-------C----------ceeeeeccC-CcccEEEeecC--cce
Confidence 999998876665 6789999999775 99999865 2 366666532 33568888887 467
Q ss_pred EEEEeCCCeEEEEeCCCCCCcc
Q 003907 446 IAIVSSKGTCHVFVLSPFGGDS 467 (787)
Q Consensus 446 LAs~S~dgTVhIwdl~~~gg~~ 467 (787)
+++++.|+++++||+.......
T Consensus 467 il~s~~~~~~~l~dl~~~~~~~ 488 (537)
T KOG0274|consen 467 ILCSSDDGSVKLWDLRSGTLIR 488 (537)
T ss_pred EEEEecCCeeEEEecccCchhh
Confidence 8999999999999998754433
No 42
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.71 E-value=9.7e-17 Score=172.39 Aligned_cols=270 Identities=14% Similarity=0.173 Sum_probs=187.0
Q ss_pred CCeEEEEEecCc-EEEEEccCCCceeEeeeeccCcEEEEEEecCCCCCCCCCCccccCcEEEEEEcCCCCCCCCCCCcCC
Q 003907 74 FKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSH 152 (787)
Q Consensus 74 ~~~vL~lG~~~G-~qVWdv~~~~~~~ells~~dg~V~~v~~lP~P~~~~~~d~F~~srpLLavV~~d~~~~~~~~~~~~~ 152 (787)
.++-|++|++.| |-+|+.. .=++.-++..||.+|++|+++++ ...+ +++|.
T Consensus 107 eGRRLltgs~SGEFtLWNg~-~fnFEtilQaHDs~Vr~m~ws~~-------------g~wm--iSgD~------------ 158 (464)
T KOG0284|consen 107 EGRRLLTGSQSGEFTLWNGT-SFNFETILQAHDSPVRTMKWSHN-------------GTWM--ISGDK------------ 158 (464)
T ss_pred CCceeEeecccccEEEecCc-eeeHHHHhhhhcccceeEEEccC-------------CCEE--EEcCC------------
Confidence 366788888877 9999984 44566788999999999999954 2244 45543
Q ss_pred CCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEe-CC-CcEEEEEecC---CeEEEEeCCeEEEEECCCCceeEEE
Q 003907 153 LGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLR-FR-SSVCMVRCSP---RIVAVGLATQIYCFDALTLENKFSV 227 (787)
Q Consensus 153 ~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~v~tL~-f~-s~V~sV~~s~---~~LaV~~~~~I~iwD~~T~e~l~tl 227 (787)
.++|++|+..- +.|+.++ .+ ..|++++|++ +++.++.++.|+|||....+....|
T Consensus 159 -------------------gG~iKyWqpnm-nnVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL 218 (464)
T KOG0284|consen 159 -------------------GGMIKYWQPNM-NNVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVL 218 (464)
T ss_pred -------------------CceEEecccch-hhhHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhhee
Confidence 26899999854 3445454 34 5899999998 4555666778999998877766666
Q ss_pred EecCCcccCCCCccccccccceeEEcc--ceEEEecCCceecCcceeccccCCCCCcCCCcCCCCCceeEeeehhhhhhh
Q 003907 228 LTYPVPQLAGQGAVGINVGYGPMAVGP--RWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQF 305 (787)
Q Consensus 228 ~t~p~p~~~~~~~~~~~~~~~~lAlsp--r~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~sp~~g~lva~~a~d~sk~l 305 (787)
.+|-- ....+++.| ..||.++.+-++ ..|+..++.++.+.-...+.++
T Consensus 219 ~GHgw-------------dVksvdWHP~kgLiasgskDnlV-----KlWDprSg~cl~tlh~HKntVl------------ 268 (464)
T KOG0284|consen 219 RGHGW-------------DVKSVDWHPTKGLIASGSKDNLV-----KLWDPRSGSCLATLHGHKNTVL------------ 268 (464)
T ss_pred ccCCC-------------CcceeccCCccceeEEccCCcee-----EeecCCCcchhhhhhhccceEE------------
Confidence 55421 134677888 678888766321 2356554433211000000111
Q ss_pred hcccceeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECC-CCCEE
Q 003907 306 AAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDP-SGTLL 384 (787)
Q Consensus 306 a~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~v~~~~aH~~pIsaLaFSp-dG~lL 384 (787)
.+.+++.+ .-+++++.|..++++|+++.+.+..+++|+..|.+++|+| .-.+|
T Consensus 269 ----------------------~~~f~~n~----N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lf 322 (464)
T KOG0284|consen 269 ----------------------AVKFNPNG----NWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLF 322 (464)
T ss_pred ----------------------EEEEcCCC----CeeEEccCCceEEEEehhHhHHHHHhhcchhhheeeccccccccce
Confidence 11122222 2345788999999999999999999999999999999999 56788
Q ss_pred EEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEeCCCCC
Q 003907 385 VTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFG 464 (787)
Q Consensus 385 ATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~~~g 464 (787)
+|++.||. |..|.+-.. .++-.+.-+ +...|++++|.|=|..||+|+.|.|+++|.-...+
T Consensus 323 tsgg~Dgs-vvh~~v~~~-----------------~p~~~i~~A-Hd~~iwsl~~hPlGhil~tgsnd~t~rfw~r~rp~ 383 (464)
T KOG0284|consen 323 TSGGSDGS-VVHWVVGLE-----------------EPLGEIPPA-HDGEIWSLAYHPLGHILATGSNDRTVRFWTRNRPG 383 (464)
T ss_pred eeccCCCc-eEEEecccc-----------------ccccCCCcc-cccceeeeeccccceeEeecCCCcceeeeccCCCC
Confidence 99999776 888987311 233333222 22469999999999999999999999999876554
Q ss_pred Cc
Q 003907 465 GD 466 (787)
Q Consensus 465 g~ 466 (787)
..
T Consensus 384 d~ 385 (464)
T KOG0284|consen 384 DK 385 (464)
T ss_pred Cc
Confidence 43
No 43
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.70 E-value=3.6e-16 Score=174.70 Aligned_cols=220 Identities=15% Similarity=0.147 Sum_probs=163.7
Q ss_pred CEEEEEECCCCeEEEEEeCCC-cEEEEEecC--CeEEEEeCC-eEEEEECCCCceeEEEEecCCcccCCCCccccccccc
Q 003907 173 TAVRFYSFQSHCYEHVLRFRS-SVCMVRCSP--RIVAVGLAT-QIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYG 248 (787)
Q Consensus 173 ~tVrlWdlktg~~v~tL~f~s-~V~sV~~s~--~~LaV~~~~-~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~~~~ 248 (787)
+.|.|||..++.++++++-.. +|++.+|=. +.+++|.|+ +|++|+..|++..+++..|+.= ..
T Consensus 35 G~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ekV~~FeAH~Dy-------------IR 101 (794)
T KOG0276|consen 35 GDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGEKVKTFEAHSDY-------------IR 101 (794)
T ss_pred CeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEecccceeeEEeeccccc-------------ee
Confidence 589999999999999998654 888877744 788888765 7999999999999999988762 35
Q ss_pred eeEEcc--ceEEEecCCce--ecCcceeccccCCCCCcCCCcCCCCCceeEeeehhhhhhhhcccceeecccccccCCCC
Q 003907 249 PMAVGP--RWLAYASNTLL--LSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDG 324 (787)
Q Consensus 249 ~lAlsp--r~LAyas~~~~--l~~~g~~s~q~lt~~~~s~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~ 324 (787)
.+++.| -++-+++++.. +|+ |+. .. + +.++|.++.+-+.
T Consensus 102 ~iavHPt~P~vLtsSDDm~iKlW~-----we~--~w-------------a--------------~~qtfeGH~HyVM--- 144 (794)
T KOG0276|consen 102 SIAVHPTLPYVLTSSDDMTIKLWD-----WEN--EW-------------A--------------CEQTFEGHEHYVM--- 144 (794)
T ss_pred eeeecCCCCeEEecCCccEEEEee-----ccC--ce-------------e--------------eeeEEcCcceEEE---
Confidence 678888 46666666542 222 111 00 0 0023333332211
Q ss_pred CCCCcccCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCC--CEEEEEEcCCCEEEEEeCCCC
Q 003907 325 SSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSG--TLLVTASVYGNNINIFRIMPS 402 (787)
Q Consensus 325 s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~v~~~~aH~~pIsaLaFSpdG--~lLATaS~dG~~IrVWdi~~~ 402 (787)
.+.++| ....++++++-|++|+||.+.+..+..+|++|+..|+|++|=+-| -+|+||++ +.+|+|||.++-
T Consensus 145 ---qv~fnP---kD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaD-D~tiKvWDyQtk 217 (794)
T KOG0276|consen 145 ---QVAFNP---KDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGAD-DLTIKVWDYQTK 217 (794)
T ss_pred ---EEEecC---CCccceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCC-CceEEEeecchH
Confidence 122222 122356788899999999999999999999999999999998755 58999988 777999998641
Q ss_pred cccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEeCCCCCCccc
Q 003907 403 CMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSG 468 (787)
Q Consensus 403 ~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~~~gg~~~ 468 (787)
.++.+|. |++ ..|..++|.|.=-+|++||.|||++||.-.+|..+..
T Consensus 218 -----------------~CV~TLe-GHt-~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~t 264 (794)
T KOG0276|consen 218 -----------------SCVQTLE-GHT-NNVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLEKT 264 (794)
T ss_pred -----------------HHHHHhh-ccc-ccceEEEecCCCcEEEEecCCccEEEecCcceehhhh
Confidence 4666665 544 4599999999999999999999999999988877654
No 44
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.68 E-value=1.1e-15 Score=164.69 Aligned_cols=235 Identities=16% Similarity=0.227 Sum_probs=169.9
Q ss_pred CcEEEEEEeeccCCCCCCCeEEEEEecCcEEEEEccCCCceeEeeeeccCcEEEEEEecCCCCCCCCCCccccCcEEEEE
Q 003907 57 DQVTWAGFDRLEYGPSVFKQVLLLGYQNGFQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVV 136 (787)
Q Consensus 57 ~~v~wa~Fd~l~~~~~~~~~vL~lG~~~G~qVWdv~~~~~~~ells~~dg~V~~v~~lP~P~~~~~~d~F~~srpLLavV 136 (787)
..|+-..||- ..+.+|+.++++..++|+++. ..++.+|++|.+.|.++.+.-. .+ .+|
T Consensus 220 g~it~~d~d~------~~~~~iAas~d~~~r~Wnvd~-~r~~~TLsGHtdkVt~ak~~~~-----------~~----~vV 277 (459)
T KOG0288|consen 220 GNITSIDFDS------DNKHVIAASNDKNLRLWNVDS-LRLRHTLSGHTDKVTAAKFKLS-----------HS----RVV 277 (459)
T ss_pred CCcceeeecC------CCceEEeecCCCceeeeeccc-hhhhhhhcccccceeeehhhcc-----------cc----cee
Confidence 3366666653 246788888888899999964 6788999999999999987621 12 234
Q ss_pred EcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCCcEEEEEecCCeEEEEe-CCeEEE
Q 003907 137 AGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRSSVCMVRCSPRIVAVGL-ATQIYC 215 (787)
Q Consensus 137 ~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~v~tL~f~s~V~sV~~s~~~LaV~~-~~~I~i 215 (787)
++. .+++|++||+.++.+.+++-+-+.+.+|.++...++.+- +++|++
T Consensus 278 sgs-------------------------------~DRtiK~WDl~k~~C~kt~l~~S~cnDI~~~~~~~~SgH~DkkvRf 326 (459)
T KOG0288|consen 278 SGS-------------------------------ADRTIKLWDLQKAYCSKTVLPGSQCNDIVCSISDVISGHFDKKVRF 326 (459)
T ss_pred ecc-------------------------------ccchhhhhhhhhhheeccccccccccceEecceeeeecccccceEE
Confidence 431 258999999999999999999999999999976666664 678999
Q ss_pred EECCCCceeEEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCcceeccccCCCCCcCCCcCCCCCceeE
Q 003907 216 FDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVA 295 (787)
Q Consensus 216 wD~~T~e~l~tl~t~p~p~~~~~~~~~~~~~~~~lAlspr~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~sp~~g~lva 295 (787)
||+++..+..++..+.. +.++.+++ ++-.
T Consensus 327 wD~Rs~~~~~sv~~gg~--------------vtSl~ls~----------------------------------~g~~--- 355 (459)
T KOG0288|consen 327 WDIRSADKTRSVPLGGR--------------VTSLDLSM----------------------------------DGLE--- 355 (459)
T ss_pred EeccCCceeeEeecCcc--------------eeeEeecc----------------------------------CCeE---
Confidence 99998876665542111 11222211 0000
Q ss_pred eeehhhhhhhhcccceeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECCCCcEEEEeccC----CCC
Q 003907 296 RYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAH----TSP 371 (787)
Q Consensus 296 ~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~v~~~~aH----~~p 371 (787)
+.+...|-++.+.|+.+.+....+.+- .+.
T Consensus 356 ----------------------------------------------lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asD 389 (459)
T KOG0288|consen 356 ----------------------------------------------LLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASD 389 (459)
T ss_pred ----------------------------------------------EeeecCCCceeeeecccccEEEEeeccccccccc
Confidence 001134567778888888777777642 234
Q ss_pred eEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeC
Q 003907 372 ISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSS 451 (787)
Q Consensus 372 IsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~LAs~S~ 451 (787)
.+.+.|||+|.|+|+||.||. |.||++.. | .....+..-..++.|.+++|+|-|..|++++.
T Consensus 390 wtrvvfSpd~~YvaAGS~dgs-v~iW~v~t-------g----------KlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk 451 (459)
T KOG0288|consen 390 WTRVVFSPDGSYVAAGSADGS-VYIWSVFT-------G----------KLEKVLSLSTSNAAITSLSWNPSGSGLLSADK 451 (459)
T ss_pred cceeEECCCCceeeeccCCCc-EEEEEccC-------c----------eEEEEeccCCCCcceEEEEEcCCCchhhcccC
Confidence 889999999999999999886 99999854 2 23444443333336999999999999999999
Q ss_pred CCeEEEEe
Q 003907 452 KGTCHVFV 459 (787)
Q Consensus 452 dgTVhIwd 459 (787)
++.+.+|.
T Consensus 452 ~~~v~lW~ 459 (459)
T KOG0288|consen 452 QKAVTLWT 459 (459)
T ss_pred CcceEecC
Confidence 99999993
No 45
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.68 E-value=2.5e-14 Score=145.31 Aligned_cols=175 Identities=20% Similarity=0.274 Sum_probs=129.5
Q ss_pred CEEEEEECCCCeEEEEEeCC-CcEEEEEecC--CeEEEEe-CCeEEEEECCCCceeEEEEecCCcccCCCCccccccccc
Q 003907 173 TAVRFYSFQSHCYEHVLRFR-SSVCMVRCSP--RIVAVGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYG 248 (787)
Q Consensus 173 ~tVrlWdlktg~~v~tL~f~-s~V~sV~~s~--~~LaV~~-~~~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~~~~ 248 (787)
+.|++||+.+++....+..+ ..+..+.+++ +.|+++. ++.|++||+.+++.+..+..+..+ ..
T Consensus 31 g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~-------------i~ 97 (289)
T cd00200 31 GTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSY-------------VS 97 (289)
T ss_pred cEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcccceEEEeccCCc-------------EE
Confidence 58999999999888877755 5777899887 3666655 678999999987766665543321 11
Q ss_pred eeEEccceEEEecCCceecCcceeccccCCCCCcCCCcCCCCCceeEeeehhhhhhhhcccceeecccccccCCCCCCCC
Q 003907 249 PMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSP 328 (787)
Q Consensus 249 ~lAlspr~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~ 328 (787)
.+++.+ +. .+
T Consensus 98 ~~~~~~-------~~----------------------------~~----------------------------------- 107 (289)
T cd00200 98 SVAFSP-------DG----------------------------RI----------------------------------- 107 (289)
T ss_pred EEEEcC-------CC----------------------------CE-----------------------------------
Confidence 122211 00 00
Q ss_pred cccCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCC
Q 003907 329 VSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGS 408 (787)
Q Consensus 329 ~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~ 408 (787)
++.+..+|.|.+||+.+++.+..+..|..+|.+++|+|++.+|++++.+|. |++||+..
T Consensus 108 -------------~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~-i~i~d~~~------- 166 (289)
T cd00200 108 -------------LSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGT-IKLWDLRT------- 166 (289)
T ss_pred -------------EEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCc-EEEEEccc-------
Confidence 011234789999999999999999999999999999999999999986565 99999853
Q ss_pred CCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEeCCCC
Q 003907 409 GNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPF 463 (787)
Q Consensus 409 g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~~~ 463 (787)
+ ..+..+. + +...|.+++|+|+++.|++++.|+.+++||+...
T Consensus 167 ~----------~~~~~~~-~-~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~ 209 (289)
T cd00200 167 G----------KCVATLT-G-HTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTG 209 (289)
T ss_pred c----------ccceeEe-c-CccccceEEECCCcCEEEEecCCCcEEEEECCCC
Confidence 1 2333343 2 3346999999999999999999999999999764
No 46
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.67 E-value=4.3e-15 Score=172.02 Aligned_cols=228 Identities=14% Similarity=0.136 Sum_probs=168.5
Q ss_pred EEEEEecC-cEEEEEccCCCceeEe-eeeccCcEEEEEEecCCCCCCCCCCccccCcEEEEEEcCCCCCCCCCCCcCCCC
Q 003907 77 VLLLGYQN-GFQVLDVEDASNFNEL-VSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLG 154 (787)
Q Consensus 77 vL~lG~~~-G~qVWdv~~~~~~~el-ls~~dg~V~~v~~lP~P~~~~~~d~F~~srpLLavV~~d~~~~~~~~~~~~~~~ 154 (787)
.+..|..+ .+++||+.. +.+... +.+|.|.|..++|. . . .++|.. |.
T Consensus 220 ~~~~~s~~~tl~~~~~~~-~~~i~~~l~GH~g~V~~l~~~-----------~-~-~~~lvs--gS--------------- 268 (537)
T KOG0274|consen 220 FFKSGSDDSTLHLWDLNN-GYLILTRLVGHFGGVWGLAFP-----------S-G-GDKLVS--GS--------------- 268 (537)
T ss_pred eEEecCCCceeEEeeccc-ceEEEeeccCCCCCceeEEEe-----------c-C-CCEEEE--Ee---------------
Confidence 45556555 478999965 555555 88999999999986 1 1 125533 31
Q ss_pred CcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCC-CcEEEEEecCCeEEE-EeCCeEEEEECCCCceeEEEEecCC
Q 003907 155 GVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFR-SSVCMVRCSPRIVAV-GLATQIYCFDALTLENKFSVLTYPV 232 (787)
Q Consensus 155 ~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~v~tL~f~-s~V~sV~~s~~~LaV-~~~~~I~iwD~~T~e~l~tl~t~p~ 232 (787)
.+.++++||..+|++++++..+ +.|+.+...+..++. +.|++|++||+.++.+++++.+|..
T Consensus 269 ----------------~D~t~rvWd~~sg~C~~~l~gh~stv~~~~~~~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~ 332 (537)
T KOG0274|consen 269 ----------------TDKTERVWDCSTGECTHSLQGHTSSVRCLTIDPFLLVSGSRDNTVKVWDVTNGACLNLLRGHTG 332 (537)
T ss_pred ----------------cCCcEEeEecCCCcEEEEecCCCceEEEEEccCceEeeccCCceEEEEeccCcceEEEeccccc
Confidence 2479999999999999999965 578888887766666 4678999999999999998887554
Q ss_pred cccCCCCccccccccceeEEccceEEEecCCceecCcceeccccCCCCCcCCCcCCCCCceeEeeehhhhhhhhccccee
Q 003907 233 PQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKT 312 (787)
Q Consensus 233 p~~~~~~~~~~~~~~~~lAlspr~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~sp~~g~lva~~a~d~sk~la~G~~kt 312 (787)
+ +..+.+ .. +
T Consensus 333 ~-------------V~~v~~-------~~-~------------------------------------------------- 342 (537)
T KOG0274|consen 333 P-------------VNCVQL-------DE-P------------------------------------------------- 342 (537)
T ss_pred c-------------EEEEEe-------cC-C-------------------------------------------------
Confidence 3 111221 11 0
Q ss_pred ecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCC
Q 003907 313 LSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGN 392 (787)
Q Consensus 313 ls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~ 392 (787)
.+.++..||+|+|||+.++++++.+.+|+..|.++.|+.. ..+.+||.|+
T Consensus 343 ----------------------------~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~- 392 (537)
T KOG0274|consen 343 ----------------------------LLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDT- 392 (537)
T ss_pred ----------------------------EEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecCc-ceEEeeeecc-
Confidence 0113467899999999999999999999999999999876 8999999965
Q ss_pred EEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEeCCCCCCcccccc
Q 003907 393 NINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQT 471 (787)
Q Consensus 393 ~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~~~gg~~~~~~ 471 (787)
.|++||+.... .+++.|. | +.+.+.++. ..+++|.+++.|++|++||++..+....+.+
T Consensus 393 ~IkvWdl~~~~----------------~c~~tl~-~-h~~~v~~l~--~~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~ 451 (537)
T KOG0274|consen 393 TIKVWDLRTKR----------------KCIHTLQ-G-HTSLVSSLL--LRDNFLVSSSADGTIKLWDAEEGECLRTLEG 451 (537)
T ss_pred ceEeecCCchh----------------hhhhhhc-C-Ccccccccc--cccceeEeccccccEEEeecccCceeeeecc
Confidence 59999995410 2455553 2 334454444 4578999999999999999998877665554
No 47
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.67 E-value=4.3e-14 Score=150.66 Aligned_cols=286 Identities=17% Similarity=0.189 Sum_probs=180.4
Q ss_pred CCCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCceeEeeeeccCcEEEEEEecCCCCCCCCCCccccC
Q 003907 52 SEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLH 130 (787)
Q Consensus 52 ~~~~~~~v~wa~Fd~l~~~~~~~~~vL~lG~~~G-~qVWdv~~~~~~~ells~~dg~V~~v~~lP~P~~~~~~d~F~~sr 130 (787)
..+|||.|+.+.|.- ++.+|++|.-+| ++||.+.......++. +++.-|+++-+- ..-
T Consensus 102 ltgHKDSVt~~~Fsh-------dgtlLATGdmsG~v~v~~~stg~~~~~~~----~e~~dieWl~WH----------p~a 160 (399)
T KOG0296|consen 102 LTGHKDSVTCCSFSH-------DGTLLATGDMSGKVLVFKVSTGGEQWKLD----QEVEDIEWLKWH----------PRA 160 (399)
T ss_pred ecCCCCceEEEEEcc-------CceEEEecCCCccEEEEEcccCceEEEee----cccCceEEEEec----------ccc
Confidence 456999999999964 588999999888 8999997655444444 566666766441 111
Q ss_pred cEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCC-cEEEEEecC--CeEEE
Q 003907 131 PFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRS-SVCMVRCSP--RIVAV 207 (787)
Q Consensus 131 pLLavV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~v~tL~f~s-~V~sV~~s~--~~LaV 207 (787)
++|+. |. .++.|-.|.+-++.+.+.+..++ ++.+=.|.| +++++
T Consensus 161 ~illA--G~-------------------------------~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~t 207 (399)
T KOG0296|consen 161 HILLA--GS-------------------------------TDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILT 207 (399)
T ss_pred cEEEe--ec-------------------------------CCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEE
Confidence 23332 21 13579999999988888887664 776666766 77887
Q ss_pred EeC-CeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEcc-ceEEEecCC---ceecC--cceeccccCCCC
Q 003907 208 GLA-TQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP-RWLAYASNT---LLLSN--SGRLSPQNLTPS 280 (787)
Q Consensus 208 ~~~-~~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~~~~~lAlsp-r~LAyas~~---~~l~~--~g~~s~q~lt~~ 280 (787)
+.+ +.|.+||..|++.++.+.....-+ ...++++- -++++.++. ..+.+ +|.+. -...+
T Consensus 208 gy~dgti~~Wn~ktg~p~~~~~~~e~~~------------~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv-~~~n~- 273 (399)
T KOG0296|consen 208 GYDDGTIIVWNPKTGQPLHKITQAEGLE------------LPCISLNLAGSTLTKGNSEGVACGVNNGSGKVV-NCNNG- 273 (399)
T ss_pred EecCceEEEEecCCCceeEEecccccCc------------CCccccccccceeEeccCCccEEEEccccceEE-EecCC-
Confidence 765 579999999999999887321100 01223322 233333321 01111 11110 00000
Q ss_pred CcCCCcCCCCCceeEeeehhhhhhhhcccceeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECCCCc
Q 003907 281 GVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRA 360 (787)
Q Consensus 281 ~~s~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~ 360 (787)
+.|..+ ..+.. . ..+...+.++.... -.+.+.-||+|.|||+...+
T Consensus 274 -----~~~~l~--~~~e~------~-----------------~esve~~~~ss~lp----L~A~G~vdG~i~iyD~a~~~ 319 (399)
T KOG0296|consen 274 -----TVPELK--PSQEE------L-----------------DESVESIPSSSKLP----LAACGSVDGTIAIYDLAAST 319 (399)
T ss_pred -----CCcccc--ccchh------h-----------------hhhhhhcccccccc----hhhcccccceEEEEecccch
Confidence 000000 00000 0 00001111111111 12356789999999998876
Q ss_pred EEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEc
Q 003907 361 IISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFS 440 (787)
Q Consensus 361 ~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFS 440 (787)
+ +++-.|..+|..|.|-+ -.+|+||+.+|+ ||.||.++ | +.+++++ | |+..|++++.+
T Consensus 320 ~-R~~c~he~~V~~l~w~~-t~~l~t~c~~g~-v~~wDaRt-------G----------~l~~~y~-G-H~~~Il~f~ls 377 (399)
T KOG0296|consen 320 L-RHICEHEDGVTKLKWLN-TDYLLTACANGK-VRQWDART-------G----------QLKFTYT-G-HQMGILDFALS 377 (399)
T ss_pred h-heeccCCCceEEEEEcC-cchheeeccCce-EEeeeccc-------c----------ceEEEEe-c-CchheeEEEEc
Confidence 4 45567999999999998 567888888786 99999875 5 4666664 5 45679999999
Q ss_pred cCCCEEEEEeCCCeEEEEeCC
Q 003907 441 HYSQWIAIVSSKGTCHVFVLS 461 (787)
Q Consensus 441 pDg~~LAs~S~dgTVhIwdl~ 461 (787)
||.++++++|.|+|.+||++.
T Consensus 378 ~~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 378 PQKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred CCCcEEEEecCCCeEEEEecC
Confidence 999999999999999999874
No 48
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.67 E-value=5e-15 Score=165.71 Aligned_cols=221 Identities=15% Similarity=0.240 Sum_probs=169.0
Q ss_pred CeEEEEEecCc-EEEEEccCCCceeEeeeeccCcEEEEEEecCCCCCCCCCCccccCcEEEEEEcCCCCCCCCCCCcCCC
Q 003907 75 KQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHL 153 (787)
Q Consensus 75 ~~vL~lG~~~G-~qVWdv~~~~~~~ells~~dg~V~~v~~lP~P~~~~~~d~F~~srpLLavV~~d~~~~~~~~~~~~~~ 153 (787)
.+-+++|.+++ ++||+.+. .+....+..|..-++++++-|. .|+++. +.|
T Consensus 67 knWiv~GsDD~~IrVfnynt-~ekV~~FeAH~DyIR~iavHPt-------------~P~vLt-sSD-------------- 117 (794)
T KOG0276|consen 67 KNWIVTGSDDMQIRVFNYNT-GEKVKTFEAHSDYIRSIAVHPT-------------LPYVLT-SSD-------------- 117 (794)
T ss_pred cceEEEecCCceEEEEeccc-ceeeEEeeccccceeeeeecCC-------------CCeEEe-cCC--------------
Confidence 56899999987 99999965 4455678899999999999974 467654 211
Q ss_pred CCcccCCcCCCCCCCCCCCCEEEEEECCCC-eEEEEEeCCC-cEEEEEecC---CeEE-EEeCCeEEEEECCCCceeEEE
Q 003907 154 GGVRDGMMDSQSGNCVNSPTAVRFYSFQSH-CYEHVLRFRS-SVCMVRCSP---RIVA-VGLATQIYCFDALTLENKFSV 227 (787)
Q Consensus 154 ~~~r~g~~~~~~~~~~~~p~tVrlWdlktg-~~v~tL~f~s-~V~sV~~s~---~~La-V~~~~~I~iwD~~T~e~l~tl 227 (787)
+-+|++||...+ .+..+++.|+ -|..|+||| +.+| .++|.+|++|.+......+|+
T Consensus 118 ------------------Dm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl 179 (794)
T KOG0276|consen 118 ------------------DMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTL 179 (794)
T ss_pred ------------------ccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCceee
Confidence 369999999765 5677777765 799999999 3555 477889999999999899999
Q ss_pred EecCCcccCCCCccccccccceeEEccceEEEecCC-ceecCcceeccccCCCCCcCCCcCCCCCceeEeeehhhhhhhh
Q 003907 228 LTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNT-LLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFA 306 (787)
Q Consensus 228 ~t~p~p~~~~~~~~~~~~~~~~lAlspr~LAyas~~-~~l~~~g~~s~q~lt~~~~s~s~sp~~g~lva~~a~d~sk~la 306 (787)
.+|.. |.+.+.+ |++.+ |
T Consensus 180 ~gHek-------------GVN~Vdy------y~~gdkp------------------------------------------ 198 (794)
T KOG0276|consen 180 EGHEK-------------GVNCVDY------YTGGDKP------------------------------------------ 198 (794)
T ss_pred ecccc-------------CcceEEe------ccCCCcc------------------------------------------
Confidence 98765 1233332 22211 1
Q ss_pred cccceeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEE
Q 003907 307 AGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVT 386 (787)
Q Consensus 307 ~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~v~~~~aH~~pIsaLaFSpdG~lLAT 386 (787)
.+.+++.|.+|+|||.++++++.++.+|+..|++++|+|.=.+++|
T Consensus 199 ----------------------------------ylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lpiiis 244 (794)
T KOG0276|consen 199 ----------------------------------YLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELPIIIS 244 (794)
T ss_pred ----------------------------------eEEecCCCceEEEeecchHHHHHHhhcccccceEEEecCCCcEEEE
Confidence 0124567899999999999999999999999999999999999999
Q ss_pred EEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEE
Q 003907 387 ASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHV 457 (787)
Q Consensus 387 aS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~LAs~S~dgTVhI 457 (787)
||+||+ +|||...+. +....|.-|. .+|+||+-.++++.+++|.+.|.|.|
T Consensus 245 gsEDGT-vriWhs~Ty-----------------~lE~tLn~gl--eRvW~I~~~k~~~~i~vG~Deg~i~v 295 (794)
T KOG0276|consen 245 GSEDGT-VRIWNSKTY-----------------KLEKTLNYGL--ERVWCIAAHKGDGKIAVGFDEGSVTV 295 (794)
T ss_pred ecCCcc-EEEecCcce-----------------ehhhhhhcCC--ceEEEEeecCCCCeEEEeccCCcEEE
Confidence 999887 999986432 1111222222 35999999999999999999887654
No 49
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.67 E-value=6e-16 Score=169.38 Aligned_cols=264 Identities=14% Similarity=0.106 Sum_probs=186.8
Q ss_pred CCCCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCceeEeeeeccCcEEEEEEecCCCCCCCCCCcccc
Q 003907 51 ASEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKL 129 (787)
Q Consensus 51 ~~~~~~~~v~wa~Fd~l~~~~~~~~~vL~lG~~~G-~qVWdv~~~~~~~ells~~dg~V~~v~~lP~P~~~~~~d~F~~s 129 (787)
...+|++.|..+.|=. ..+.+|+.|..++ +.||++-..+.+..++.+|..+|+.+.+.+.+ .
T Consensus 209 ~~~gH~kgvsai~~fp------~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g-----------~ 271 (503)
T KOG0282|consen 209 NLSGHTKGVSAIQWFP------KKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCG-----------T 271 (503)
T ss_pred eccCCccccchhhhcc------ceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccC-----------C
Confidence 3678888888888742 1356777777776 99999988889999999999999999988543 1
Q ss_pred CcEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCCcEEEEEecC---CeEE
Q 003907 130 HPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRSSVCMVRCSP---RIVA 206 (787)
Q Consensus 130 rpLLavV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~v~tL~f~s~V~sV~~s~---~~La 206 (787)
-+| .++ .++.|++||+.||+++..+.....++.|.+.+ ++++
T Consensus 272 -~fL-S~s---------------------------------fD~~lKlwDtETG~~~~~f~~~~~~~cvkf~pd~~n~fl 316 (503)
T KOG0282|consen 272 -SFL-SAS---------------------------------FDRFLKLWDTETGQVLSRFHLDKVPTCVKFHPDNQNIFL 316 (503)
T ss_pred -eee-eee---------------------------------cceeeeeeccccceEEEEEecCCCceeeecCCCCCcEEE
Confidence 133 211 24799999999999999999989999999987 4555
Q ss_pred EE-eCCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCcceeccccCCCCCcCCC
Q 003907 207 VG-LATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPS 285 (787)
Q Consensus 207 V~-~~~~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~~~~~lAlspr~LAyas~~~~l~~~g~~s~q~lt~~~~s~s 285 (787)
+| .+.+|..||+++++.++.+..|-.+ ...+.| -.
T Consensus 317 ~G~sd~ki~~wDiRs~kvvqeYd~hLg~-------------i~~i~F-------~~------------------------ 352 (503)
T KOG0282|consen 317 VGGSDKKIRQWDIRSGKVVQEYDRHLGA-------------ILDITF-------VD------------------------ 352 (503)
T ss_pred EecCCCcEEEEeccchHHHHHHHhhhhh-------------eeeeEE-------cc------------------------
Confidence 54 5678999999999865554332110 111111 00
Q ss_pred cCCCCCceeEeeehhhhhhhhcccceeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECCCCcEEEEe
Q 003907 286 TSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQF 365 (787)
Q Consensus 286 ~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~v~~~ 365 (787)
.|. ..++...|+.++||+....-.+..+
T Consensus 353 ---~g~-------------------------------------------------rFissSDdks~riWe~~~~v~ik~i 380 (503)
T KOG0282|consen 353 ---EGR-------------------------------------------------RFISSSDDKSVRIWENRIPVPIKNI 380 (503)
T ss_pred ---CCc-------------------------------------------------eEeeeccCccEEEEEcCCCccchhh
Confidence 000 0123356789999999887665544
Q ss_pred c-cCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccc-cEEEEEEccCC
Q 003907 366 K-AHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSA-TIQDICFSHYS 443 (787)
Q Consensus 366 ~-aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a-~I~slaFSpDg 443 (787)
. .+.....+|+.+|+|.+++.=|. |+.|-||.+.+-.. ...++...|+..+ --..+.|||||
T Consensus 381 ~~~~~hsmP~~~~~P~~~~~~aQs~-dN~i~ifs~~~~~r---------------~nkkK~feGh~vaGys~~v~fSpDG 444 (503)
T KOG0282|consen 381 ADPEMHTMPCLTLHPNGKWFAAQSM-DNYIAIFSTVPPFR---------------LNKKKRFEGHSVAGYSCQVDFSPDG 444 (503)
T ss_pred cchhhccCcceecCCCCCeehhhcc-CceEEEEecccccc---------------cCHhhhhcceeccCceeeEEEcCCC
Confidence 3 23345568999999999999898 66799999754210 1112222343322 24569999999
Q ss_pred CEEEEEeCCCeEEEEeCCCCCCccccccccCCCCC
Q 003907 444 QWIAIVSSKGTCHVFVLSPFGGDSGFQTLSSQGGD 478 (787)
Q Consensus 444 ~~LAs~S~dgTVhIwdl~~~gg~~~~~~H~~~~~~ 478 (787)
++|++|+.||.+.+||.++......+.+|+....+
T Consensus 445 ~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~ 479 (503)
T KOG0282|consen 445 RTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIG 479 (503)
T ss_pred CeEEeecCCccEEEeechhhhhhhccccCCcceEE
Confidence 99999999999999999998877788888654333
No 50
>PTZ00420 coronin; Provisional
Probab=99.66 E-value=5.2e-14 Score=163.83 Aligned_cols=218 Identities=11% Similarity=0.134 Sum_probs=146.0
Q ss_pred EEEEEccCCCceeEeeeeccCcEEEEEEecCCCCCCCCCCccccCcEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCC
Q 003907 86 FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQS 165 (787)
Q Consensus 86 ~qVWdv~~~~~~~ells~~dg~V~~v~~lP~P~~~~~~d~F~~srpLLavV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~ 165 (787)
+++|+... ......+..|.++|..+++.|. ... +||..+
T Consensus 56 I~L~~~~r-~~~v~~L~gH~~~V~~lafsP~----------~~~--lLASgS---------------------------- 94 (568)
T PTZ00420 56 IRLENQMR-KPPVIKLKGHTSSILDLQFNPC----------FSE--ILASGS---------------------------- 94 (568)
T ss_pred EEeeecCC-CceEEEEcCCCCCEEEEEEcCC----------CCC--EEEEEe----------------------------
Confidence 78998754 3344567889999999999873 122 665422
Q ss_pred CCCCCCCCEEEEEECCCCe--------EEEEEeC-CCcEEEEEecC---CeEEE-EeCCeEEEEECCCCceeEEEEecCC
Q 003907 166 GNCVNSPTAVRFYSFQSHC--------YEHVLRF-RSSVCMVRCSP---RIVAV-GLATQIYCFDALTLENKFSVLTYPV 232 (787)
Q Consensus 166 ~~~~~~p~tVrlWdlktg~--------~v~tL~f-~s~V~sV~~s~---~~LaV-~~~~~I~iwD~~T~e~l~tl~t~p~ 232 (787)
.+++|+|||+.++. .+..+.. ...|..|+|+| .+|++ +.++.|+|||+.+++...++. ++.
T Consensus 95 -----~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~ 168 (568)
T PTZ00420 95 -----EDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN-MPK 168 (568)
T ss_pred -----CCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe-cCC
Confidence 13689999998642 3345554 45899999998 34555 457789999999998766553 221
Q ss_pred cccCCCCccccccccceeEEccceEEEecCCceecCcceeccccCCCCCcCCCcCCCCCceeEeeehhhhhhhhccccee
Q 003907 233 PQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKT 312 (787)
Q Consensus 233 p~~~~~~~~~~~~~~~~lAlspr~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~sp~~g~lva~~a~d~sk~la~G~~kt 312 (787)
. ...++++| . |.+
T Consensus 169 ~-------------V~Slswsp----------------------------------d-G~l------------------- 181 (568)
T PTZ00420 169 K-------------LSSLKWNI----------------------------------K-GNL------------------- 181 (568)
T ss_pred c-------------EEEEEECC----------------------------------C-CCE-------------------
Confidence 1 12233321 1 000
Q ss_pred ecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEE-----EEECCCCCEEEEE
Q 003907 313 LSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISA-----LCFDPSGTLLVTA 387 (787)
Q Consensus 313 ls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~v~~~~aH~~pIsa-----LaFSpdG~lLATa 387 (787)
++.+..|+.|+|||+++++.+.++.+|.+.+.+ ..|++++.+|+|+
T Consensus 182 -----------------------------Lat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTt 232 (568)
T PTZ00420 182 -----------------------------LSGTCVGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGGDDNYILST 232 (568)
T ss_pred -----------------------------EEEEecCCEEEEEECCCCcEEEEEecccCCceeEEEEeeeEcCCCCEEEEE
Confidence 112345889999999999999999999886543 3467899999998
Q ss_pred EcCC---CEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEeCCC
Q 003907 388 SVYG---NNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSP 462 (787)
Q Consensus 388 S~dG---~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~~ 462 (787)
+.++ +.|+|||++.. + ..+..+.-......+...-+.++|.++++|+.|++|++|++..
T Consensus 233 G~d~~~~R~VkLWDlr~~------~----------~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~ 294 (568)
T PTZ00420 233 GFSKNNMREMKLWDLKNT------T----------SALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSL 294 (568)
T ss_pred EcCCCCccEEEEEECCCC------C----------CceEEEEecCCccceEEeeeCCCCCEEEEEECCCeEEEEEccC
Confidence 8765 36999998631 1 2333322111223344445567799999999999999999965
No 51
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.66 E-value=8.1e-15 Score=165.44 Aligned_cols=237 Identities=19% Similarity=0.200 Sum_probs=178.6
Q ss_pred CCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCceeEeeeeccCcEEEEEEecCCCCCCCCCCccccCcEEE
Q 003907 56 KDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLL 134 (787)
Q Consensus 56 ~~~v~wa~Fd~l~~~~~~~~~vL~lG~~~G-~qVWdv~~~~~~~ells~~dg~V~~v~~lP~P~~~~~~d~F~~srpLLa 134 (787)
.+.|+-+.+.. .++.|++|+.+| ++|||++.....+.+...|.+-|.++++.. .++
T Consensus 217 ~~~vtSv~ws~-------~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~~----------------~~l 273 (484)
T KOG0305|consen 217 EELVTSVKWSP-------DGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWNS----------------SVL 273 (484)
T ss_pred CCceEEEEECC-------CCCEEEEeecCCeEEEEehhhccccccccCCcCceeEEEeccC----------------ceE
Confidence 67788888764 488999999998 899999887666666555889999999872 222
Q ss_pred EEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEE-EeC-CCcEEEEEecC--CeEEEE-e
Q 003907 135 VVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHV-LRF-RSSVCMVRCSP--RIVAVG-L 209 (787)
Q Consensus 135 vV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~v~t-L~f-~s~V~sV~~s~--~~LaV~-~ 209 (787)
. +|. ..+.|.++|++..+.+.. +.. ...|+.+++++ +.||.+ .
T Consensus 274 s-sGs-------------------------------r~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgn 321 (484)
T KOG0305|consen 274 S-SGS-------------------------------RDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGN 321 (484)
T ss_pred E-Eec-------------------------------CCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccCCC
Confidence 2 221 125799999998876555 664 46999999988 788885 4
Q ss_pred CCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEcc---ceEEEecCCceecCcceeccccCCCCCcCCCc
Q 003907 210 ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP---RWLAYASNTLLLSNSGRLSPQNLTPSGVSPST 286 (787)
Q Consensus 210 ~~~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~~~~~lAlsp---r~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~ 286 (787)
|+.++|||..+.+.++++..|... +-.+|++| ..||.++
T Consensus 322 DN~~~Iwd~~~~~p~~~~~~H~aA-------------VKA~awcP~q~~lLAsGG------------------------- 363 (484)
T KOG0305|consen 322 DNVVFIWDGLSPEPKFTFTEHTAA-------------VKALAWCPWQSGLLATGG------------------------- 363 (484)
T ss_pred ccceEeccCCCccccEEEecccee-------------eeEeeeCCCccCceEEcC-------------------------
Confidence 778999999888888888887652 34566655 3444433
Q ss_pred CCCCCceeEeeehhhhhhhhcccceeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECCCCcEEEEec
Q 003907 287 SPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFK 366 (787)
Q Consensus 287 sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~v~~~~ 366 (787)
+..|+.|++||..+++.+..+.
T Consensus 364 ----------------------------------------------------------Gs~D~~i~fwn~~~g~~i~~vd 385 (484)
T KOG0305|consen 364 ----------------------------------------------------------GSADRCIKFWNTNTGARIDSVD 385 (484)
T ss_pred ----------------------------------------------------------CCcccEEEEEEcCCCcEecccc
Confidence 2458999999999999888776
Q ss_pred cCCCCeEEEEECCCCCEEEEE-EcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCE
Q 003907 367 AHTSPISALCFDPSGTLLVTA-SVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQW 445 (787)
Q Consensus 367 aH~~pIsaLaFSpdG~lLATa-S~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~ 445 (787)
.. +-|..|.|++..+-|+++ +.-...|.||+... ..++..+. | |...|..+++||||..
T Consensus 386 tg-sQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps-----------------~~~~~~l~-g-H~~RVl~la~SPdg~~ 445 (484)
T KOG0305|consen 386 TG-SQVCSLIWSKKYKELLSTHGYSENQITLWKYPS-----------------MKLVAELL-G-HTSRVLYLALSPDGET 445 (484)
T ss_pred cC-CceeeEEEcCCCCEEEEecCCCCCcEEEEeccc-----------------cceeeeec-C-CcceeEEEEECCCCCE
Confidence 54 679999999998666654 33234699999832 13444443 4 4457999999999999
Q ss_pred EEEEeCCCeEEEEeCCCC
Q 003907 446 IAIVSSKGTCHVFVLSPF 463 (787)
Q Consensus 446 LAs~S~dgTVhIwdl~~~ 463 (787)
|++++.|.|+++|++-+.
T Consensus 446 i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 446 IVTGAADETLRFWNLFDE 463 (484)
T ss_pred EEEecccCcEEeccccCC
Confidence 999999999999999765
No 52
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.66 E-value=4e-14 Score=145.82 Aligned_cols=263 Identities=13% Similarity=0.155 Sum_probs=171.6
Q ss_pred CCCCCcEEEEEEeeccCCCCCCCeEEEEEecC-cEEEEEccCCCceeEeeeeccCcEEEEEEecCCCCCCCCCCccccCc
Q 003907 53 EDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQN-GFQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHP 131 (787)
Q Consensus 53 ~~~~~~v~wa~Fd~l~~~~~~~~~vL~lG~~~-G~qVWdv~~~~~~~ells~~dg~V~~v~~lP~P~~~~~~d~F~~srp 131 (787)
.+|--.++-+.||+ .+-+|..+..+ ..-||-.. +|+..-.+.+|.|.|.++.+.-+ ++
T Consensus 7 ~GHERplTqiKyN~-------eGDLlFscaKD~~~~vw~s~-nGerlGty~GHtGavW~~Did~~-----------s~-- 65 (327)
T KOG0643|consen 7 QGHERPLTQIKYNR-------EGDLLFSCAKDSTPTVWYSL-NGERLGTYDGHTGAVWCCDIDWD-----------SK-- 65 (327)
T ss_pred ccCccccceEEecC-------CCcEEEEecCCCCceEEEec-CCceeeeecCCCceEEEEEecCC-----------cc--
Confidence 45556688888986 24577777665 58999874 57777889999999999988731 22
Q ss_pred EEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCCcEEEEEecC--CeEEEEe
Q 003907 132 FLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRSSVCMVRCSP--RIVAVGL 209 (787)
Q Consensus 132 LLavV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~v~tL~f~s~V~sV~~s~--~~LaV~~ 209 (787)
.| ++| + .+.+++|||.++|+++.+++++++|..+.|+. ++++++.
T Consensus 66 ~l--iTG-----S--------------------------AD~t~kLWDv~tGk~la~~k~~~~Vk~~~F~~~gn~~l~~t 112 (327)
T KOG0643|consen 66 HL--ITG-----S--------------------------ADQTAKLWDVETGKQLATWKTNSPVKRVDFSFGGNLILAST 112 (327)
T ss_pred ee--eec-----c--------------------------ccceeEEEEcCCCcEEEEeecCCeeEEEeeccCCcEEEEEe
Confidence 33 232 1 23689999999999999999999999999987 5666666
Q ss_pred CC------eEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCcceeccccCCCCCcC
Q 003907 210 AT------QIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVS 283 (787)
Q Consensus 210 ~~------~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~~~~~lAlspr~LAyas~~~~l~~~g~~s~q~lt~~~~s 283 (787)
++ .|.+||++.... .+.. .. |+-. |-...+.+
T Consensus 113 D~~mg~~~~v~~fdi~~~~~--~~~s-~e----------------p~~k----I~t~~ski------------------- 150 (327)
T KOG0643|consen 113 DKQMGYTCFVSVFDIRDDSS--DIDS-EE----------------PYLK----IPTPDSKI------------------- 150 (327)
T ss_pred hhhcCcceEEEEEEccCChh--hhcc-cC----------------ceEE----ecCCccce-------------------
Confidence 54 288888764321 0000 00 0000 00000000
Q ss_pred CCcCCCCCceeEeeehhhhhhhhcccceeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECCCC-cEE
Q 003907 284 PSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTR-AII 362 (787)
Q Consensus 284 ~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~-~~v 362 (787)
....|.+.+..+..+..+|.|.+||+.++ +.+
T Consensus 151 -----------------------------------------------t~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v 183 (327)
T KOG0643|consen 151 -----------------------------------------------TSALWGPLGETIIAGHEDGSISIYDARTGKELV 183 (327)
T ss_pred -----------------------------------------------eeeeecccCCEEEEecCCCcEEEEEcccCceee
Confidence 00112222334456788999999999997 566
Q ss_pred EEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcc---------cC-------------CCCCCccccCCcc-
Q 003907 363 SQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCM---------RS-------------GSGNHKYDWNSSH- 419 (787)
Q Consensus 363 ~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~---------~~-------------~~g~~~~~~~~s~- 419 (787)
...+.|...|+.|.|+||.++++|+|. +++-++||..+... .| +-|....|-....
T Consensus 184 ~s~~~h~~~Ind~q~s~d~T~FiT~s~-Dttakl~D~~tl~v~Kty~te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~ 262 (327)
T KOG0643|consen 184 DSDEEHSSKINDLQFSRDRTYFITGSK-DTTAKLVDVRTLEVLKTYTTERPVNTAAISPLLDHVILGGGQEAMDVTTTST 262 (327)
T ss_pred echhhhccccccccccCCcceEEeccc-CccceeeeccceeeEEEeeecccccceecccccceEEecCCceeeeeeeecc
Confidence 667889999999999999999999999 56689999764210 00 0010000000000
Q ss_pred ---------------eEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEeCC
Q 003907 420 ---------------VHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLS 461 (787)
Q Consensus 420 ---------------~~l~~l~rG~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~ 461 (787)
+.+-.+ .| |-++|.+++|+|||+-.++|+.||.|+|...+
T Consensus 263 r~GKFEArFyh~i~eEEigrv-kG-HFGPINsvAfhPdGksYsSGGEDG~VR~h~Fd 317 (327)
T KOG0643|consen 263 RAGKFEARFYHLIFEEEIGRV-KG-HFGPINSVAFHPDGKSYSSGGEDGYVRLHHFD 317 (327)
T ss_pred cccchhhhHHHHHHHHHhccc-cc-cccCcceeEECCCCcccccCCCCceEEEEEec
Confidence 001111 12 23579999999999999999999999886554
No 53
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.65 E-value=3.3e-14 Score=156.96 Aligned_cols=275 Identities=20% Similarity=0.209 Sum_probs=177.0
Q ss_pred CCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCce-eEeeeeccCcEEEEEEecCCCCCCCCCCccccCc
Q 003907 54 DLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNF-NELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHP 131 (787)
Q Consensus 54 ~~~~~v~wa~Fd~l~~~~~~~~~vL~lG~~~G-~qVWdv~~~~~~-~ells~~dg~V~~v~~lP~P~~~~~~d~F~~srp 131 (787)
+|.-+++=|+|- | .+-.++.|...| +||||....+.+ ...+.--.|||..+++.+ .++|
T Consensus 57 EH~~~vtVAkyS-----P--sG~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~-----------ds~R- 117 (603)
T KOG0318|consen 57 EHAHQVTVAKYS-----P--SGFYIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDF-----------DSKR- 117 (603)
T ss_pred cccceeEEEEeC-----C--CceEEeecCCcCcEEEEeccCcceeeeeeeeecccccccceeCC-----------CCcE-
Confidence 466678878874 3 367999999888 999999542211 111222348999999984 3443
Q ss_pred EEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCC-cEEEEEecC---CeEEE
Q 003907 132 FLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRS-SVCMVRCSP---RIVAV 207 (787)
Q Consensus 132 LLavV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~v~tL~f~s-~V~sV~~s~---~~LaV 207 (787)
+.|+ |++- + .-+.+.+|| +|.-+.++..++ .|.+++|.| -++++
T Consensus 118 I~av--GEGr----------------e------------rfg~~F~~D--SG~SvGei~GhSr~ins~~~KpsRPfRi~T 165 (603)
T KOG0318|consen 118 IAAV--GEGR----------------E------------RFGHVFLWD--SGNSVGEITGHSRRINSVDFKPSRPFRIAT 165 (603)
T ss_pred EEEE--ecCc----------------c------------ceeEEEEec--CCCccceeeccceeEeeeeccCCCceEEEe
Confidence 4433 4431 0 014566666 788888998876 678898876 35666
Q ss_pred Ee-CCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCcceeccccCCCCCcCCCc
Q 003907 208 GL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPST 286 (787)
Q Consensus 208 ~~-~~~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~~~~~lAlspr~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~ 286 (787)
+. |+.|.+|+=.-++-..++..|..- ++.+- |+
T Consensus 166 ~sdDn~v~ffeGPPFKFk~s~r~HskF-------------V~~VR-------ys-------------------------- 199 (603)
T KOG0318|consen 166 GSDDNTVAFFEGPPFKFKSSFREHSKF-------------VNCVR-------YS-------------------------- 199 (603)
T ss_pred ccCCCeEEEeeCCCeeeeecccccccc-------------eeeEE-------EC--------------------------
Confidence 55 557888875545444444444331 00111 11
Q ss_pred CCCCCceeEeeehhhhhhhhcccceeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECCCCcEEEEec
Q 003907 287 SPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFK 366 (787)
Q Consensus 287 sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~v~~~~ 366 (787)
|++ .-++++..||.|.|||=.+++.+..|.
T Consensus 200 -----------------------------------PDG---------------~~Fat~gsDgki~iyDGktge~vg~l~ 229 (603)
T KOG0318|consen 200 -----------------------------------PDG---------------SRFATAGSDGKIYIYDGKTGEKVGELE 229 (603)
T ss_pred -----------------------------------CCC---------------CeEEEecCCccEEEEcCCCccEEEEec
Confidence 111 112355679999999999999999998
Q ss_pred ---cCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccC--CCCC------CccccCC------------------
Q 003907 367 ---AHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRS--GSGN------HKYDWNS------------------ 417 (787)
Q Consensus 367 ---aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~--~~g~------~~~~~~~------------------ 417 (787)
+|++.|.+|+|+||++.++|+|. |+++||||+....... ..+. .+..|..
T Consensus 230 ~~~aHkGsIfalsWsPDs~~~~T~Sa-Dkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~ 308 (603)
T KOG0318|consen 230 DSDAHKGSIFALSWSPDSTQFLTVSA-DKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPS 308 (603)
T ss_pred CCCCccccEEEEEECCCCceEEEecC-CceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEeccc
Confidence 99999999999999999999999 6679999986532000 0000 0001110
Q ss_pred cceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEeCCCCCCcc-ccccccCCCCC
Q 003907 418 SHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDS-GFQTLSSQGGD 478 (787)
Q Consensus 418 s~~~l~~l~rG~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~~~gg~~-~~~~H~~~~~~ 478 (787)
....+. ...| |+..|++++.+||+++|.++|.||.|.=|++....... .-+.|+.++.+
T Consensus 309 d~~~~~-~i~G-HnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~ 368 (603)
T KOG0318|consen 309 DPSVLK-VISG-HNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKG 368 (603)
T ss_pred CCChhh-eecc-cccceeEEEEcCCCCEEEeeccCceEEEEecCCccccccccccccceEEE
Confidence 011111 2235 34569999999999999999999999999997643322 22667665443
No 54
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.65 E-value=1.5e-15 Score=161.34 Aligned_cols=278 Identities=15% Similarity=0.157 Sum_probs=187.9
Q ss_pred CCCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCceeEeeeeccCcEEEEEEecCCCCCCCCCCccccC
Q 003907 52 SEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLH 130 (787)
Q Consensus 52 ~~~~~~~v~wa~Fd~l~~~~~~~~~vL~lG~~~G-~qVWdv~~~~~~~ells~~dg~V~~v~~lP~P~~~~~~d~F~~sr 130 (787)
.++|+|.|....-+. + .-..++.|.-+| ++|||++ .-++..++..|+|.|+.|.+. + ..
T Consensus 62 L~gHrdGV~~lakhp-----~-~ls~~aSGs~DG~VkiWnls-qR~~~~~f~AH~G~V~Gi~v~-----------~-~~- 121 (433)
T KOG0268|consen 62 LDGHRDGVSCLAKHP-----N-KLSTVASGSCDGEVKIWNLS-QRECIRTFKAHEGLVRGICVT-----------Q-TS- 121 (433)
T ss_pred ccccccccchhhcCc-----c-hhhhhhccccCceEEEEehh-hhhhhheeecccCceeeEEec-----------c-cc-
Confidence 578999998766542 1 113567777766 9999995 467888999999999999876 2 11
Q ss_pred cEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCCcEEEEEecC--CeEEEE
Q 003907 131 PFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRSSVCMVRCSP--RIVAVG 208 (787)
Q Consensus 131 pLLavV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~v~tL~f~s~V~sV~~s~--~~LaV~ 208 (787)
++ . +|+ +++|+.|-+.- ..++++-..+.++.|+... ..+|++
T Consensus 122 -~~-t-vgd--------------------------------DKtvK~wk~~~-~p~~tilg~s~~~gIdh~~~~~~FaTc 165 (433)
T KOG0268|consen 122 -FF-T-VGD--------------------------------DKTVKQWKIDG-PPLHTILGKSVYLGIDHHRKNSVFATC 165 (433)
T ss_pred -eE-E-ecC--------------------------------CcceeeeeccC-Ccceeeecccccccccccccccccccc
Confidence 32 2 232 36899999754 6899999999999999877 344444
Q ss_pred eCCeEEEEECCCCceeEEEEe-cCCcccCCCCccccccccceeEEcc---ceEEEecCCceecCcceeccccCCCCCcCC
Q 003907 209 LATQIYCFDALTLENKFSVLT-YPVPQLAGQGAVGINVGYGPMAVGP---RWLAYASNTLLLSNSGRLSPQNLTPSGVSP 284 (787)
Q Consensus 209 ~~~~I~iwD~~T~e~l~tl~t-~p~p~~~~~~~~~~~~~~~~lAlsp---r~LAyas~~~~l~~~g~~s~q~lt~~~~s~ 284 (787)
.++|.|||..-...+.++.. .+. ...+.++| ..||.++++- +.+..|..+...
T Consensus 166 -Ge~i~IWD~~R~~Pv~smswG~Dt--------------i~svkfNpvETsILas~~sDr-----sIvLyD~R~~~P--- 222 (433)
T KOG0268|consen 166 -GEQIDIWDEQRDNPVSSMSWGADS--------------ISSVKFNPVETSILASCASDR-----SIVLYDLRQASP--- 222 (433)
T ss_pred -CceeeecccccCCccceeecCCCc--------------eeEEecCCCcchheeeeccCC-----ceEEEecccCCc---
Confidence 46899999876555555543 211 12345555 6677775541 111122111100
Q ss_pred CcCCCCCceeEeeehhhhhhhhcccceeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECCCC-cEEE
Q 003907 285 STSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTR-AIIS 363 (787)
Q Consensus 285 s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~-~~v~ 363 (787)
+.+....+ -.+.+++| +.+..+..+..|..+..||++.. +++.
T Consensus 223 ----------------------------l~KVi~~m----RTN~Iswn----PeafnF~~a~ED~nlY~~DmR~l~~p~~ 266 (433)
T KOG0268|consen 223 ----------------------------LKKVILTM----RTNTICWN----PEAFNFVAANEDHNLYTYDMRNLSRPLN 266 (433)
T ss_pred ----------------------------cceeeeec----cccceecC----ccccceeeccccccceehhhhhhcccch
Confidence 00000001 12233333 34444567889999999999875 4677
Q ss_pred EeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCC
Q 003907 364 QFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYS 443 (787)
Q Consensus 364 ~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg 443 (787)
..++|.+.|..+.|||.|+-++|||- |++||||.+.. +. .+.+|--+|= ..|.++.||.|+
T Consensus 267 v~~dhvsAV~dVdfsptG~Efvsgsy-DksIRIf~~~~-------~~--------SRdiYhtkRM---q~V~~Vk~S~Ds 327 (433)
T KOG0268|consen 267 VHKDHVSAVMDVDFSPTGQEFVSGSY-DKSIRIFPVNH-------GH--------SRDIYHTKRM---QHVFCVKYSMDS 327 (433)
T ss_pred hhcccceeEEEeccCCCcchhccccc-cceEEEeecCC-------Cc--------chhhhhHhhh---heeeEEEEeccc
Confidence 78899999999999999999999999 56699999853 10 1234433331 259999999999
Q ss_pred CEEEEEeCCCeEEEEeCCCC
Q 003907 444 QWIAIVSSKGTCHVFVLSPF 463 (787)
Q Consensus 444 ~~LAs~S~dgTVhIwdl~~~ 463 (787)
+|+.+||+|+.|++|.-+..
T Consensus 328 kyi~SGSdd~nvRlWka~As 347 (433)
T KOG0268|consen 328 KYIISGSDDGNVRLWKAKAS 347 (433)
T ss_pred cEEEecCCCcceeeeecchh
Confidence 99999999999999987643
No 55
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.65 E-value=3.1e-13 Score=142.17 Aligned_cols=267 Identities=13% Similarity=0.090 Sum_probs=159.7
Q ss_pred eEEEEEecCc-EEEEEccCCCceeEeeeeccCcEEEEEEecCCCCCCCCCCccccCcEEEEEEcCCCCCCCCCCCcCCCC
Q 003907 76 QVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLG 154 (787)
Q Consensus 76 ~vL~lG~~~G-~qVWdv~~~~~~~ells~~dg~V~~v~~lP~P~~~~~~d~F~~srpLLavV~~d~~~~~~~~~~~~~~~ 154 (787)
.+++++..+| +.+||++. +++...+..+.+ +..+.+.|+. ..|+++..+
T Consensus 2 ~~~~s~~~d~~v~~~d~~t-~~~~~~~~~~~~-~~~l~~~~dg-------------~~l~~~~~~--------------- 51 (300)
T TIGR03866 2 KAYVSNEKDNTISVIDTAT-LEVTRTFPVGQR-PRGITLSKDG-------------KLLYVCASD--------------- 51 (300)
T ss_pred cEEEEecCCCEEEEEECCC-CceEEEEECCCC-CCceEECCCC-------------CEEEEEECC---------------
Confidence 3566666655 99999954 556666665444 5667777531 244333221
Q ss_pred CcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCCcEEEEEecC--CeEEEE--eCCeEEEEECCCCceeEEEEec
Q 003907 155 GVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRSSVCMVRCSP--RIVAVG--LATQIYCFDALTLENKFSVLTY 230 (787)
Q Consensus 155 ~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~v~tL~f~s~V~sV~~s~--~~LaV~--~~~~I~iwD~~T~e~l~tl~t~ 230 (787)
.++|++||+++++.+.++.....+..+.+++ +.|+++ .++.|++||+.+.+.+..+...
T Consensus 52 -----------------~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~ 114 (300)
T TIGR03866 52 -----------------SDTIQVIDLATGEVIGTLPSGPDPELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPVG 114 (300)
T ss_pred -----------------CCeEEEEECCCCcEEEeccCCCCccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCC
Confidence 2589999999999988887665566777876 556554 3568999999988776666432
Q ss_pred CCcccCCCCccccccccceeEEcc--ceEEEecCCceecCcceeccccCCCCCcCCCcCCCCCceeEeeehhhhhhhhcc
Q 003907 231 PVPQLAGQGAVGINVGYGPMAVGP--RWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAG 308 (787)
Q Consensus 231 p~p~~~~~~~~~~~~~~~~lAlsp--r~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~sp~~g~lva~~a~d~sk~la~G 308 (787)
.. ...++++| ++|+++...... ...++.-+ +.+....
T Consensus 115 ~~--------------~~~~~~~~dg~~l~~~~~~~~~----~~~~d~~~------------~~~~~~~----------- 153 (300)
T TIGR03866 115 VE--------------PEGMAVSPDGKIVVNTSETTNM----AHFIDTKT------------YEIVDNV----------- 153 (300)
T ss_pred CC--------------cceEEECCCCCEEEEEecCCCe----EEEEeCCC------------CeEEEEE-----------
Confidence 11 12467776 666665432100 00011000 0000000
Q ss_pred cceeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECCCCcEEEEeccCC-----C--CeEEEEECCCC
Q 003907 309 LSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHT-----S--PISALCFDPSG 381 (787)
Q Consensus 309 ~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~v~~~~aH~-----~--pIsaLaFSpdG 381 (787)
..........++++.+... ..+..+|.|.+||+.+++.+..+..+. . ....++|+|+|
T Consensus 154 ------------~~~~~~~~~~~s~dg~~l~---~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg 218 (300)
T TIGR03866 154 ------------LVDQRPRFAEFTADGKELW---VSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDG 218 (300)
T ss_pred ------------EcCCCccEEEECCCCCEEE---EEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCC
Confidence 0000011122333333211 234568999999999998877765332 1 12468899999
Q ss_pred CEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEE-eCCCeEEEEeC
Q 003907 382 TLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIV-SSKGTCHVFVL 460 (787)
Q Consensus 382 ~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~LAs~-S~dgTVhIwdl 460 (787)
++++.+..++..|.+||+.. + ..+..+..+ ..+.+++|+|||++|+++ ..+++|+|||+
T Consensus 219 ~~~~~~~~~~~~i~v~d~~~-------~----------~~~~~~~~~---~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~ 278 (300)
T TIGR03866 219 KTAFVALGPANRVAVVDAKT-------Y----------EVLDYLLVG---QRVWQLAFTPDEKYLLTTNGVSNDVSVIDV 278 (300)
T ss_pred CEEEEEcCCCCeEEEEECCC-------C----------cEEEEEEeC---CCcceEEECCCCCEEEEEcCCCCeEEEEEC
Confidence 98665543344599999853 2 233333222 248899999999999887 46899999999
Q ss_pred CCCCC
Q 003907 461 SPFGG 465 (787)
Q Consensus 461 ~~~gg 465 (787)
.....
T Consensus 279 ~~~~~ 283 (300)
T TIGR03866 279 AALKV 283 (300)
T ss_pred CCCcE
Confidence 87543
No 56
>PTZ00421 coronin; Provisional
Probab=99.65 E-value=1.4e-13 Score=158.77 Aligned_cols=249 Identities=12% Similarity=0.107 Sum_probs=161.2
Q ss_pred CCCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCC------ceeEeeeeccCcEEEEEEecCCCCCCCCC
Q 003907 52 SEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDAS------NFNELVSKRDGPVSFLQMQPFPVKDDGCE 124 (787)
Q Consensus 52 ~~~~~~~v~wa~Fd~l~~~~~~~~~vL~lG~~~G-~qVWdv~~~~------~~~ells~~dg~V~~v~~lP~P~~~~~~d 124 (787)
..+|++.|..+.|+.. ++++|++|..+| ++|||+...+ +....+..|...|.+|++.|..
T Consensus 71 l~GH~~~V~~v~fsP~------d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~------- 137 (493)
T PTZ00421 71 LLGQEGPIIDVAFNPF------DPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSA------- 137 (493)
T ss_pred EeCCCCCEEEEEEcCC------CCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCC-------
Confidence 3568889999999731 245788887776 9999996532 2344577888999999998741
Q ss_pred CccccCcEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCC-CcEEEEEecC-
Q 003907 125 GFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFR-SSVCMVRCSP- 202 (787)
Q Consensus 125 ~F~~srpLLavV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~v~tL~f~-s~V~sV~~s~- 202 (787)
..+|+..+. +++|+|||+++++.+.++..+ ..|.+|+|++
T Consensus 138 -----~~iLaSgs~---------------------------------DgtVrIWDl~tg~~~~~l~~h~~~V~sla~spd 179 (493)
T PTZ00421 138 -----MNVLASAGA---------------------------------DMVVNVWDVERGKAVEVIKCHSDQITSLEWNLD 179 (493)
T ss_pred -----CCEEEEEeC---------------------------------CCEEEEEECCCCeEEEEEcCCCCceEEEEEECC
Confidence 125654221 368999999999999998754 6899999987
Q ss_pred -CeEEEEe-CCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCcceeccccCCCC
Q 003907 203 -RIVAVGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPS 280 (787)
Q Consensus 203 -~~LaV~~-~~~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~~~~~lAlspr~LAyas~~~~l~~~g~~s~q~lt~~ 280 (787)
++|+++. ++.|+|||+.+++.+.++..|.... ...+.+. ...
T Consensus 180 G~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~------------~~~~~w~-------~~~----------------- 223 (493)
T PTZ00421 180 GSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAK------------SQRCLWA-------KRK----------------- 223 (493)
T ss_pred CCEEEEecCCCEEEEEECCCCcEEEEEecCCCCc------------ceEEEEc-------CCC-----------------
Confidence 5777655 5689999999998887776654310 0011111 100
Q ss_pred CcCCCcCCCCCceeEeeehhhhhhhhcccceeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECCCCc
Q 003907 281 GVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRA 360 (787)
Q Consensus 281 ~~s~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~ 360 (787)
+.+++ .+.+...|+.|+|||+.+..
T Consensus 224 ----------~~ivt---------------------------------------------~G~s~s~Dr~VklWDlr~~~ 248 (493)
T PTZ00421 224 ----------DLIIT---------------------------------------------LGCSKSQQRQIMLWDTRKMA 248 (493)
T ss_pred ----------CeEEE---------------------------------------------EecCCCCCCeEEEEeCCCCC
Confidence 00000 00012458999999998754
Q ss_pred -EEEEeccCC-CCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEE
Q 003907 361 -IISQFKAHT-SPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDIC 438 (787)
Q Consensus 361 -~v~~~~aH~-~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~sla 438 (787)
.+..+..|. ..+....|++++++|++++..+..|++||+.. + ..++.+. ......+..++
T Consensus 249 ~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~-------~----------~~~~~~~-~~s~~~~~g~~ 310 (493)
T PTZ00421 249 SPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMN-------E----------RLTFCSS-YSSVEPHKGLC 310 (493)
T ss_pred CceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeC-------C----------ceEEEee-ccCCCCCcceE
Confidence 444444443 45667789999999999986344699999954 2 1222222 11233577888
Q ss_pred EccCCCEEEEEeCCCeEEEEeCCC
Q 003907 439 FSHYSQWIAIVSSKGTCHVFVLSP 462 (787)
Q Consensus 439 FSpDg~~LAs~S~dgTVhIwdl~~ 462 (787)
|.|. +-+-...-...++|.+..
T Consensus 311 ~~pk--~~~dv~~~Ei~r~~~l~~ 332 (493)
T PTZ00421 311 MMPK--WSLDTRKCEIARFYALTY 332 (493)
T ss_pred eccc--ccccccceeeeEEEEecC
Confidence 8884 333333334457777754
No 57
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.64 E-value=2.1e-13 Score=143.44 Aligned_cols=242 Identities=14% Similarity=0.183 Sum_probs=157.1
Q ss_pred CCCCcEEEEEEeeccCCCCCCCeEEEEEecC-cEEEEEccCCCceeEeeeeccCcEEEEEEecCCCCCCCCCCccccCcE
Q 003907 54 DLKDQVTWAGFDRLEYGPSVFKQVLLLGYQN-GFQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPF 132 (787)
Q Consensus 54 ~~~~~v~wa~Fd~l~~~~~~~~~vL~lG~~~-G~qVWdv~~~~~~~ells~~dg~V~~v~~lP~P~~~~~~d~F~~srpL 132 (787)
+....|.-..|+. ++.+|+++..+ .+||||+.....++.+-+++- .|..+.+. .... .
T Consensus 12 ~~~~~i~sl~fs~-------~G~~litss~dDsl~LYd~~~g~~~~ti~skky-G~~~~~Ft-----------h~~~--~ 70 (311)
T KOG1446|consen 12 ETNGKINSLDFSD-------DGLLLITSSEDDSLRLYDSLSGKQVKTINSKKY-GVDLACFT-----------HHSN--T 70 (311)
T ss_pred cCCCceeEEEecC-------CCCEEEEecCCCeEEEEEcCCCceeeEeecccc-cccEEEEe-----------cCCc--e
Confidence 3677888888874 46677776665 899999976444444444433 35555544 1111 2
Q ss_pred EEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCC-cEEEEEecC---CeEEEE
Q 003907 133 LLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRS-SVCMVRCSP---RIVAVG 208 (787)
Q Consensus 133 LavV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~v~tL~f~s-~V~sV~~s~---~~LaV~ 208 (787)
++.+ .+ ..+.+||.-++.++++++.+..|. .|.+|+.+| .+|.++
T Consensus 71 -~i~s--St----------------------------k~d~tIryLsl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S 119 (311)
T KOG1446|consen 71 -VIHS--ST----------------------------KEDDTIRYLSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSS 119 (311)
T ss_pred -EEEc--cC----------------------------CCCCceEEEEeecCceEEEcCCCCceEEEEEecCCCCeEEecc
Confidence 2211 10 013689999999999999998775 899999999 466678
Q ss_pred eCCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCcceeccccCCCCCcCCCcCC
Q 003907 209 LATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSP 288 (787)
Q Consensus 209 ~~~~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~~~~~lAlspr~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~sp 288 (787)
+|++|++||+++-++...+.-... ...|+.|.=|-++
T Consensus 120 ~D~tvrLWDlR~~~cqg~l~~~~~---------------pi~AfDp~GLifA---------------------------- 156 (311)
T KOG1446|consen 120 LDKTVRLWDLRVKKCQGLLNLSGR---------------PIAAFDPEGLIFA---------------------------- 156 (311)
T ss_pred cCCeEEeeEecCCCCceEEecCCC---------------cceeECCCCcEEE----------------------------
Confidence 889999999987766554432221 1233333111111
Q ss_pred CCCceeEeeehhhhhhhhcccceeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECCCC--cEEEEec
Q 003907 289 GGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTR--AIISQFK 366 (787)
Q Consensus 289 ~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~--~~v~~~~ 366 (787)
.+.....|++||++.- .+-.+|.
T Consensus 157 -------------------------------------------------------~~~~~~~IkLyD~Rs~dkgPF~tf~ 181 (311)
T KOG1446|consen 157 -------------------------------------------------------LANGSELIKLYDLRSFDKGPFTTFS 181 (311)
T ss_pred -------------------------------------------------------EecCCCeEEEEEecccCCCCceeEc
Confidence 1112237888888753 3344443
Q ss_pred ---cCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEE--ecccccccEEEEEEcc
Q 003907 367 ---AHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKL--HRGITSATIQDICFSH 441 (787)
Q Consensus 367 ---aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l--~rG~~~a~I~slaFSp 441 (787)
+-....+.|.|||||++|+-+...+ .+.|.|.-. | ..+..+ ...... .-.+.+|+|
T Consensus 182 i~~~~~~ew~~l~FS~dGK~iLlsT~~s-~~~~lDAf~-------G----------~~~~tfs~~~~~~~-~~~~a~ftP 242 (311)
T KOG1446|consen 182 ITDNDEAEWTDLEFSPDGKSILLSTNAS-FIYLLDAFD-------G----------TVKSTFSGYPNAGN-LPLSATFTP 242 (311)
T ss_pred cCCCCccceeeeEEcCCCCEEEEEeCCC-cEEEEEccC-------C----------cEeeeEeeccCCCC-cceeEEECC
Confidence 3367889999999999998887744 588988632 3 233333 222111 125789999
Q ss_pred CCCEEEEEeCCCeEEEEeCCCCC
Q 003907 442 YSQWIAIVSSKGTCHVFVLSPFG 464 (787)
Q Consensus 442 Dg~~LAs~S~dgTVhIwdl~~~g 464 (787)
||+++.++++||+||+|+++...
T Consensus 243 ds~Fvl~gs~dg~i~vw~~~tg~ 265 (311)
T KOG1446|consen 243 DSKFVLSGSDDGTIHVWNLETGK 265 (311)
T ss_pred CCcEEEEecCCCcEEEEEcCCCc
Confidence 99999999999999999996543
No 58
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.64 E-value=9.8e-15 Score=160.16 Aligned_cols=245 Identities=16% Similarity=0.187 Sum_probs=175.2
Q ss_pred CCCCCCcEEEEEEeeccCCCCCCCeEEEEEecCcEEEEEccCCCceeEeeeeccCcEEEEEEecCCCCCCCCCCccccCc
Q 003907 52 SEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNGFQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHP 131 (787)
Q Consensus 52 ~~~~~~~v~wa~Fd~l~~~~~~~~~vL~lG~~~G~qVWdv~~~~~~~ells~~dg~V~~v~~lP~P~~~~~~d~F~~srp 131 (787)
..++.+.|...+|.. . .+.=+++...-++|+|+... -.+.+++++=+..|..+. |+...-
T Consensus 22 ~~ke~~~vssl~fsp-----~-~P~d~aVt~S~rvqly~~~~-~~~~k~~srFk~~v~s~~-------------fR~DG~ 81 (487)
T KOG0310|consen 22 VHKEHNSVSSLCFSP-----K-HPYDFAVTSSVRVQLYSSVT-RSVRKTFSRFKDVVYSVD-------------FRSDGR 81 (487)
T ss_pred cccccCcceeEecCC-----C-CCCceEEecccEEEEEecch-hhhhhhHHhhccceeEEE-------------eecCCe
Confidence 445566788888863 1 23447777788999999853 456777777777888886 444444
Q ss_pred EEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCC-CcEEEEEecC---CeEEE
Q 003907 132 FLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFR-SSVCMVRCSP---RIVAV 207 (787)
Q Consensus 132 LLavV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~v~tL~f~-s~V~sV~~s~---~~LaV 207 (787)
||| +||. .+.|+|+|+++...+..++-+ .+|..+.|++ ..|+.
T Consensus 82 Lla--aGD~-------------------------------sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s 128 (487)
T KOG0310|consen 82 LLA--AGDE-------------------------------SGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVS 128 (487)
T ss_pred EEE--ccCC-------------------------------cCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEe
Confidence 775 3554 158999998887777777654 5999999988 46666
Q ss_pred EeCCe-EEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCcceeccccCCCCCcCCCc
Q 003907 208 GLATQ-IYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPST 286 (787)
Q Consensus 208 ~~~~~-I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~~~~~lAlspr~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~ 286 (787)
|.|+. +++||+.+......+.+|..- ....++ .
T Consensus 129 ~sDd~v~k~~d~s~a~v~~~l~~htDY-------------VR~g~~-------~-------------------------- 162 (487)
T KOG0310|consen 129 GSDDKVVKYWDLSTAYVQAELSGHTDY-------------VRCGDI-------S-------------------------- 162 (487)
T ss_pred cCCCceEEEEEcCCcEEEEEecCCcce-------------eEeecc-------c--------------------------
Confidence 76664 899999988754455555430 011111 1
Q ss_pred CCCCCceeEeeehhhhhhhhcccceeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECCCC-cEEEEe
Q 003907 287 SPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTR-AIISQF 365 (787)
Q Consensus 287 sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~-~~v~~~ 365 (787)
|.++.+ +.++++||.|++||++.. ..+.+|
T Consensus 163 -~~~~hi------------------------------------------------vvtGsYDg~vrl~DtR~~~~~v~el 193 (487)
T KOG0310|consen 163 -PANDHI------------------------------------------------VVTGSYDGKVRLWDTRSLTSRVVEL 193 (487)
T ss_pred -cCCCeE------------------------------------------------EEecCCCceEEEEEeccCCceeEEe
Confidence 111111 235678999999999987 555555
Q ss_pred ccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCE
Q 003907 366 KAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQW 445 (787)
Q Consensus 366 ~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~ 445 (787)
.|..||..+.|=|+|.++|||+ |..|+|||+.. |. +.++.+ +.|+..|+|+++..|++.
T Consensus 194 -nhg~pVe~vl~lpsgs~iasAg--Gn~vkVWDl~~-------G~---------qll~~~--~~H~KtVTcL~l~s~~~r 252 (487)
T KOG0310|consen 194 -NHGCPVESVLALPSGSLIASAG--GNSVKVWDLTT-------GG---------QLLTSM--FNHNKTVTCLRLASDSTR 252 (487)
T ss_pred -cCCCceeeEEEcCCCCEEEEcC--CCeEEEEEecC-------Cc---------eehhhh--hcccceEEEEEeecCCce
Confidence 5888999999999999999998 77899999954 31 333333 335567999999999999
Q ss_pred EEEEeCCCeEEEEeCCCCCC
Q 003907 446 IAIVSSKGTCHVFVLSPFGG 465 (787)
Q Consensus 446 LAs~S~dgTVhIwdl~~~gg 465 (787)
|.+++-|+.|+|||+..++-
T Consensus 253 LlS~sLD~~VKVfd~t~~Kv 272 (487)
T KOG0310|consen 253 LLSGSLDRHVKVFDTTNYKV 272 (487)
T ss_pred EeecccccceEEEEccceEE
Confidence 99999999999999887643
No 59
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.63 E-value=3.6e-14 Score=143.94 Aligned_cols=172 Identities=15% Similarity=0.093 Sum_probs=130.4
Q ss_pred CCEEEEEECCCCeEEEEEeCCC-cEEEEEecC---CeEEEEeCCeEEEEECCCCceeEEEEecCCcccCCCCcccccccc
Q 003907 172 PTAVRFYSFQSHCYEHVLRFRS-SVCMVRCSP---RIVAVGLATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGY 247 (787)
Q Consensus 172 p~tVrlWdlktg~~v~tL~f~s-~V~sV~~s~---~~LaV~~~~~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~~~ 247 (787)
+++||+|+...|.+++++..++ .|++++.+. ++-+.|.+..|++||+.|++.+..+.+|... .
T Consensus 38 drtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TGkv~Rr~rgH~aq-------------V 104 (307)
T KOG0316|consen 38 DRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTGKVDRRFRGHLAQ-------------V 104 (307)
T ss_pred CceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEEcccCeeeeecccccce-------------e
Confidence 4799999999999999999886 899888754 4444566778999999999999988887542 2
Q ss_pred ceeEEccceEEEecCCceecCcceeccccCCCCCcCCCcCCCCCceeEeeehhhhhhhhcccceeecccccccCCCCCCC
Q 003907 248 GPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSS 327 (787)
Q Consensus 248 ~~lAlspr~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~ 327 (787)
+.+. |-... ++
T Consensus 105 NtV~-------fNees----------------------------SV---------------------------------- 115 (307)
T KOG0316|consen 105 NTVR-------FNEES----------------------------SV---------------------------------- 115 (307)
T ss_pred eEEE-------ecCcc----------------------------eE----------------------------------
Confidence 2233 22211 00
Q ss_pred CcccCCccccccccccccCCCceEEEEECCCC--cEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCccc
Q 003907 328 PVSPNSVWKVGRHAGADMDNAGIVVVKDFVTR--AIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMR 405 (787)
Q Consensus 328 ~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~--~~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~ 405 (787)
+++++.|..+++||.++. +++..|..-...|.++..+ +..++++|.||+ +|.||++.
T Consensus 116 --------------v~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~--~heIvaGS~DGt-vRtydiR~---- 174 (307)
T KOG0316|consen 116 --------------VASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA--EHEIVAGSVDGT-VRTYDIRK---- 174 (307)
T ss_pred --------------EEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec--ccEEEeeccCCc-EEEEEeec----
Confidence 123456889999999764 5788888888899988875 678999999887 89999964
Q ss_pred CCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEeCCCC
Q 003907 406 SGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPF 463 (787)
Q Consensus 406 ~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~~~ 463 (787)
| ...-.. -..+|++++||+||+.+.+++.|+|+|+.|-++.
T Consensus 175 ---G----------~l~sDy----~g~pit~vs~s~d~nc~La~~l~stlrLlDk~tG 215 (307)
T KOG0316|consen 175 ---G----------TLSSDY----FGHPITSVSFSKDGNCSLASSLDSTLRLLDKETG 215 (307)
T ss_pred ---c----------eeehhh----cCCcceeEEecCCCCEEEEeeccceeeecccchh
Confidence 3 111111 1246999999999999999999999999886553
No 60
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.63 E-value=2.1e-15 Score=159.16 Aligned_cols=240 Identities=15% Similarity=0.172 Sum_probs=175.0
Q ss_pred CCCCCCcEEEEEEeeccCCCCCCCeEEEEEecC-cEEEEEccCCCceeEeeeeccCcEEEEEEecCCCCCCCCCCccccC
Q 003907 52 SEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQN-GFQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLH 130 (787)
Q Consensus 52 ~~~~~~~v~wa~Fd~l~~~~~~~~~vL~lG~~~-G~qVWdv~~~~~~~ells~~dg~V~~v~~lP~P~~~~~~d~F~~sr 130 (787)
.-+|++.|+...||. ++|+.|+.+ .++|||++ +++...++=+|-..|-.+.+.. .
T Consensus 233 L~GHtGSVLCLqyd~---------rviisGSSDsTvrvWDv~-tge~l~tlihHceaVLhlrf~n-------------g- 288 (499)
T KOG0281|consen 233 LTGHTGSVLCLQYDE---------RVIVSGSSDSTVRVWDVN-TGEPLNTLIHHCEAVLHLRFSN-------------G- 288 (499)
T ss_pred hhcCCCcEEeeeccc---------eEEEecCCCceEEEEecc-CCchhhHHhhhcceeEEEEEeC-------------C-
Confidence 456888899888873 689999876 69999996 5778888888888898888762 2
Q ss_pred cEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEE---EEEe-CCCcEEEEEecCCeEE
Q 003907 131 PFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYE---HVLR-FRSSVCMVRCSPRIVA 206 (787)
Q Consensus 131 pLLavV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~v---~tL~-f~s~V~sV~~s~~~La 206 (787)
+++ ++. .++++++||+.+-..+ +.|. +...|-.|.|+.++++
T Consensus 289 -~mv--tcS-------------------------------kDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd~kyIV 334 (499)
T KOG0281|consen 289 -YMV--TCS-------------------------------KDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIV 334 (499)
T ss_pred -EEE--Eec-------------------------------CCceeEEEeccCchHHHHHHHHhhhhhheeeeccccceEE
Confidence 553 332 2478999999876532 2333 4468999999999888
Q ss_pred EEe-CCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCcceeccccCCCCCcCCC
Q 003907 207 VGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPS 285 (787)
Q Consensus 207 V~~-~~~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~~~~~lAlspr~LAyas~~~~l~~~g~~s~q~lt~~~~s~s 285 (787)
.+. +.+|++|++.|++...+|.+|... +|.....
T Consensus 335 sASgDRTikvW~~st~efvRtl~gHkRG-----------------------IAClQYr---------------------- 369 (499)
T KOG0281|consen 335 SASGDRTIKVWSTSTCEFVRTLNGHKRG-----------------------IACLQYR---------------------- 369 (499)
T ss_pred EecCCceEEEEeccceeeehhhhccccc-----------------------ceehhcc----------------------
Confidence 765 557999999999998888776541 2222211
Q ss_pred cCCCCCceeEeeehhhhhhhhcccceeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECCCCcEEEEe
Q 003907 286 TSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQF 365 (787)
Q Consensus 286 ~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~v~~~ 365 (787)
|.++ .+++.|.+|++||+..|.++..+
T Consensus 370 -----~rlv------------------------------------------------VSGSSDntIRlwdi~~G~cLRvL 396 (499)
T KOG0281|consen 370 -----DRLV------------------------------------------------VSGSSDNTIRLWDIECGACLRVL 396 (499)
T ss_pred -----CeEE------------------------------------------------EecCCCceEEEEeccccHHHHHH
Confidence 1111 23567889999999999999999
Q ss_pred ccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCE
Q 003907 366 KAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQW 445 (787)
Q Consensus 366 ~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~ 445 (787)
++|+.-|.|+.|+ .+.+++|.-||+ |+|||+...... . ..++..++..+.+ +.+.|..+.|. ...
T Consensus 397 eGHEeLvRciRFd--~krIVSGaYDGk-ikvWdl~aaldp---r-----a~~~~~Cl~~lv~--hsgRVFrLQFD--~fq 461 (499)
T KOG0281|consen 397 EGHEELVRCIRFD--NKRIVSGAYDGK-IKVWDLQAALDP---R-----APASTLCLRTLVE--HSGRVFRLQFD--EFQ 461 (499)
T ss_pred hchHHhhhheeec--Cceeeeccccce-EEEEecccccCC---c-----ccccchHHHhhhh--ccceeEEEeec--ceE
Confidence 9999999999995 578999999886 999998542110 0 0011123444433 34568888885 467
Q ss_pred EEEEeCCCeEEEEeCCC
Q 003907 446 IAIVSSKGTCHVFVLSP 462 (787)
Q Consensus 446 LAs~S~dgTVhIwdl~~ 462 (787)
|+++|.|.||-|||...
T Consensus 462 IvsssHddtILiWdFl~ 478 (499)
T KOG0281|consen 462 IISSSHDDTILIWDFLN 478 (499)
T ss_pred EEeccCCCeEEEEEcCC
Confidence 99999999999999865
No 61
>PTZ00420 coronin; Provisional
Probab=99.63 E-value=3.1e-13 Score=157.35 Aligned_cols=130 Identities=9% Similarity=0.135 Sum_probs=98.1
Q ss_pred CCCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCc-------eeEeeeeccCcEEEEEEecCCCCCCCC
Q 003907 52 SEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASN-------FNELVSKRDGPVSFLQMQPFPVKDDGC 123 (787)
Q Consensus 52 ~~~~~~~v~wa~Fd~l~~~~~~~~~vL~lG~~~G-~qVWdv~~~~~-------~~ells~~dg~V~~v~~lP~P~~~~~~ 123 (787)
..+|++.|..+.|.. ..+.+|++|..+| ++|||+...+. ....+..|.+.|.++++.|+.
T Consensus 70 L~gH~~~V~~lafsP------~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g------ 137 (568)
T PTZ00420 70 LKGHTSSILDLQFNP------CFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMN------ 137 (568)
T ss_pred EcCCCCCEEEEEEcC------CCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCC------
Confidence 456889999999963 1246888888876 99999964332 123567788999999998741
Q ss_pred CCccccCcEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCCcEEEEEecC-
Q 003907 124 EGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRSSVCMVRCSP- 202 (787)
Q Consensus 124 d~F~~srpLLavV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~v~tL~f~s~V~sV~~s~- 202 (787)
..+|+. ++ .+++|+|||+++++.+.++.++..|.++.|++
T Consensus 138 ------~~iLaS-gS--------------------------------~DgtIrIWDl~tg~~~~~i~~~~~V~Slswspd 178 (568)
T PTZ00420 138 ------YYIMCS-SG--------------------------------FDSFVNIWDIENEKRAFQINMPKKLSSLKWNIK 178 (568)
T ss_pred ------CeEEEE-Ee--------------------------------CCCeEEEEECCCCcEEEEEecCCcEEEEEECCC
Confidence 113433 22 13689999999999998888888999999987
Q ss_pred -CeEEEEe-CCeEEEEECCCCceeEEEEecCC
Q 003907 203 -RIVAVGL-ATQIYCFDALTLENKFSVLTYPV 232 (787)
Q Consensus 203 -~~LaV~~-~~~I~iwD~~T~e~l~tl~t~p~ 232 (787)
++|+++. +++|+|||+++++.+.++..|..
T Consensus 179 G~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g 210 (568)
T PTZ00420 179 GNLLSGTCVGKHMHIIDPRKQEIASSFHIHDG 210 (568)
T ss_pred CCEEEEEecCCEEEEEECCCCcEEEEEecccC
Confidence 6777665 66899999999998888877654
No 62
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.63 E-value=5e-14 Score=147.09 Aligned_cols=221 Identities=16% Similarity=0.201 Sum_probs=160.9
Q ss_pred CeEEEEEecCcEEEEEccCCCceeEeeeeccCcEEEEEEecCCCCCCCCCCccccCcEEEEEEcCCCCCCCCCCCcCCCC
Q 003907 75 KQVLLLGYQNGFQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLG 154 (787)
Q Consensus 75 ~~vL~lG~~~G~qVWdv~~~~~~~ells~~dg~V~~v~~lP~P~~~~~~d~F~~srpLLavV~~d~~~~~~~~~~~~~~~ 154 (787)
..+|.+|.+..+++||++. |++..-+..|.+-|..+. |. .|.+.+|.++.
T Consensus 103 s~i~S~gtDk~v~~wD~~t-G~~~rk~k~h~~~vNs~~--p~------------rrg~~lv~Sgs--------------- 152 (338)
T KOG0265|consen 103 SHILSCGTDKTVRGWDAET-GKRIRKHKGHTSFVNSLD--PS------------RRGPQLVCSGS--------------- 152 (338)
T ss_pred CEEEEecCCceEEEEeccc-ceeeehhccccceeeecC--cc------------ccCCeEEEecC---------------
Confidence 4566666677899999964 666665666666677665 31 12222334432
Q ss_pred CcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCCcEEEEEecC---CeEEEEeCCeEEEEECCCCceeEEEEecC
Q 003907 155 GVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRSSVCMVRCSP---RIVAVGLATQIYCFDALTLENKFSVLTYP 231 (787)
Q Consensus 155 ~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~v~tL~f~s~V~sV~~s~---~~LaV~~~~~I~iwD~~T~e~l~tl~t~p 231 (787)
.+++++|||+++.+.+++++....+.+|.|+. +.+..+-++.|++||++..+.++++.+|.
T Consensus 153 ----------------dD~t~kl~D~R~k~~~~t~~~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~ 216 (338)
T KOG0265|consen 153 ----------------DDGTLKLWDIRKKEAIKTFENKYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDGLYTLSGHA 216 (338)
T ss_pred ----------------CCceEEEEeecccchhhccccceeEEEEEecccccceeeccccCceeeeccccCcceEEeeccc
Confidence 24799999999999999998888999999987 56666778899999999999999999887
Q ss_pred CcccCCCCccccccccceeEEccceEEEecCCceecCcceeccccCCCCCcCCCcCCCCCceeEeeehhhhhhhhcccce
Q 003907 232 VPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSK 311 (787)
Q Consensus 232 ~p~~~~~~~~~~~~~~~~lAlspr~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~sp~~g~lva~~a~d~sk~la~G~~k 311 (787)
.+ ...+++++ |+. .
T Consensus 217 Dt-------------It~lsls~----~gs------------------------------~------------------- 230 (338)
T KOG0265|consen 217 DT-------------ITGLSLSR----YGS------------------------------F------------------- 230 (338)
T ss_pred Cc-------------eeeEEecc----CCC------------------------------c-------------------
Confidence 64 12334321 000 0
Q ss_pred eecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECCC----CcEEEEeccCCC----CeEEEEECCCCCE
Q 003907 312 TLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVT----RAIISQFKAHTS----PISALCFDPSGTL 383 (787)
Q Consensus 312 tls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s----~~~v~~~~aH~~----pIsaLaFSpdG~l 383 (787)
+.+-.-|.++++||++- .+++..|.+|.. .....+|+|+++.
T Consensus 231 ------------------------------llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~ 280 (338)
T KOG0265|consen 231 ------------------------------LLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTK 280 (338)
T ss_pred ------------------------------cccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCCCCc
Confidence 00112367899999864 456888887643 4456789999999
Q ss_pred EEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEE
Q 003907 384 LVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHV 457 (787)
Q Consensus 384 LATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~LAs~S~dgTVhI 457 (787)
+..+|. ++.+.|||... ...+|+|- |+ ...|.+++|.|.-.+|.+++.|.||.+
T Consensus 281 i~ags~-dr~vyvwd~~~-----------------r~~lyklp-Gh-~gsvn~~~Fhp~e~iils~~sdk~i~l 334 (338)
T KOG0265|consen 281 ITAGSA-DRFVYVWDTTS-----------------RRILYKLP-GH-YGSVNEVDFHPTEPIILSCSSDKTIYL 334 (338)
T ss_pred cccccc-cceEEEeeccc-----------------ccEEEEcC-Cc-ceeEEEeeecCCCcEEEEeccCceeEe
Confidence 999998 66799999743 14788885 43 457999999999999999999999986
No 63
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.61 E-value=5.6e-14 Score=142.53 Aligned_cols=247 Identities=15% Similarity=0.138 Sum_probs=172.6
Q ss_pred CCCCCCcEEEEEEeeccCCCCCCCeEEEEEecCcEEEEEccCCCceeEeeeeccCcEEEEEEecCCCCCCCCCCccccCc
Q 003907 52 SEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNGFQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHP 131 (787)
Q Consensus 52 ~~~~~~~v~wa~Fd~l~~~~~~~~~vL~lG~~~G~qVWdv~~~~~~~ells~~dg~V~~v~~lP~P~~~~~~d~F~~srp 131 (787)
.+.+++-|.-++||. + ..-||.+|.+..+++||.- .+.+.+.++.|.-.|..+...- -.+
T Consensus 13 l~~~qgaV~avryN~----d--GnY~ltcGsdrtvrLWNp~-rg~liktYsghG~EVlD~~~s~-----------Dns-- 72 (307)
T KOG0316|consen 13 LDCAQGAVRAVRYNV----D--GNYCLTCGSDRTVRLWNPL-RGALIKTYSGHGHEVLDAALSS-----------DNS-- 72 (307)
T ss_pred ecccccceEEEEEcc----C--CCEEEEcCCCceEEeeccc-ccceeeeecCCCceeeeccccc-----------ccc--
Confidence 356788899999985 3 2568888888999999984 5889999999998888887662 122
Q ss_pred EEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCC-CcEEEEEecC--CeEEE-
Q 003907 132 FLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFR-SSVCMVRCSP--RIVAV- 207 (787)
Q Consensus 132 LLavV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~v~tL~f~-s~V~sV~~s~--~~LaV- 207 (787)
-++. |++ ++.|.+||..||+.++.++.+ ..|-.|+||. .+++.
T Consensus 73 kf~s--~Gg-------------------------------Dk~v~vwDV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~Sg 119 (307)
T KOG0316|consen 73 KFAS--CGG-------------------------------DKAVQVWDVNTGKVDRRFRGHLAQVNTVRFNEESSVVASG 119 (307)
T ss_pred cccc--CCC-------------------------------CceEEEEEcccCeeeeecccccceeeEEEecCcceEEEec
Confidence 2333 321 368999999999999999876 5899999998 45555
Q ss_pred EeCCeEEEEECCCC--ceeEEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCcceeccccCCCCCcCCC
Q 003907 208 GLATQIYCFDALTL--ENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPS 285 (787)
Q Consensus 208 ~~~~~I~iwD~~T~--e~l~tl~t~p~p~~~~~~~~~~~~~~~~lAlspr~LAyas~~~~l~~~g~~s~q~lt~~~~s~s 285 (787)
+.+..+++||.+.- +.++.|.+ +.+ |..+.+
T Consensus 120 sfD~s~r~wDCRS~s~ePiQilde------------------------------a~D-------~V~Si~---------- 152 (307)
T KOG0316|consen 120 SFDSSVRLWDCRSRSFEPIQILDE------------------------------AKD-------GVSSID---------- 152 (307)
T ss_pred cccceeEEEEcccCCCCccchhhh------------------------------hcC-------ceeEEE----------
Confidence 45778999997643 22222211 110 000000
Q ss_pred cCCCCCceeEeeehhhhhhhhcccceeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECCCCcEEEEe
Q 003907 286 TSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQF 365 (787)
Q Consensus 286 ~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~v~~~ 365 (787)
++++ -+..++.||+++.||++.++.....
T Consensus 153 ---------------------------v~~h------------------------eIvaGS~DGtvRtydiR~G~l~sDy 181 (307)
T KOG0316|consen 153 ---------------------------VAEH------------------------EIVAGSVDGTVRTYDIRKGTLSSDY 181 (307)
T ss_pred ---------------------------eccc------------------------EEEeeccCCcEEEEEeecceeehhh
Confidence 0000 0124567999999999999876666
Q ss_pred ccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccc-cEEEEEEccCCC
Q 003907 366 KAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSA-TIQDICFSHYSQ 444 (787)
Q Consensus 366 ~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a-~I~slaFSpDg~ 444 (787)
-+| ||++++|++||+.++.++.++ ++|+-|-.+ | ..+.. ..|+.+. -=.+++|+....
T Consensus 182 ~g~--pit~vs~s~d~nc~La~~l~s-tlrLlDk~t-------G----------klL~s-YkGhkn~eykldc~l~qsdt 240 (307)
T KOG0316|consen 182 FGH--PITSVSFSKDGNCSLASSLDS-TLRLLDKET-------G----------KLLKS-YKGHKNMEYKLDCCLNQSDT 240 (307)
T ss_pred cCC--cceeEEecCCCCEEEEeeccc-eeeecccch-------h----------HHHHH-hcccccceeeeeeeecccce
Confidence 555 999999999999999899855 599998643 3 22222 2344332 135688888889
Q ss_pred EEEEEeCCCeEEEEeCCCCCCccccc
Q 003907 445 WIAIVSSKGTCHVFVLSPFGGDSGFQ 470 (787)
Q Consensus 445 ~LAs~S~dgTVhIwdl~~~gg~~~~~ 470 (787)
.++++|.||.|.+||+........+.
T Consensus 241 hV~sgSEDG~Vy~wdLvd~~~~sk~~ 266 (307)
T KOG0316|consen 241 HVFSGSEDGKVYFWDLVDETQISKLS 266 (307)
T ss_pred eEEeccCCceEEEEEeccceeeeeec
Confidence 99999999999999998754443333
No 64
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.61 E-value=3.8e-13 Score=138.95 Aligned_cols=261 Identities=13% Similarity=0.149 Sum_probs=169.6
Q ss_pred CCCCCCcEEEEEEeeccCCCCCCCeEEEEEecC-cEEEEEccCC--CceeEeee-eccCcEEEEEEecCCCCCCCCCCcc
Q 003907 52 SEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQN-GFQVLDVEDA--SNFNELVS-KRDGPVSFLQMQPFPVKDDGCEGFR 127 (787)
Q Consensus 52 ~~~~~~~v~wa~Fd~l~~~~~~~~~vL~lG~~~-G~qVWdv~~~--~~~~ells-~~dg~V~~v~~lP~P~~~~~~d~F~ 127 (787)
.++|+++|-.+.|+. . .+.+|++|..+ -++||+.... =.++.+++ .|.-.|+.+++.|-
T Consensus 10 ~~gh~~r~W~~awhp-----~-~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~----------- 72 (312)
T KOG0645|consen 10 LSGHKDRVWSVAWHP-----G-KGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPH----------- 72 (312)
T ss_pred ecCCCCcEEEEEecc-----C-CceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCC-----------
Confidence 578999998888874 2 25688888876 5999999642 23444453 46678999999974
Q ss_pred ccCcEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCC--eEEEEEeCC-CcEEEEEecC--
Q 003907 128 KLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSH--CYEHVLRFR-SSVCMVRCSP-- 202 (787)
Q Consensus 128 ~srpLLavV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg--~~v~tL~f~-s~V~sV~~s~-- 202 (787)
++ +||..+ -+.++.||.-..+ +++.+|+.+ +.|.+|++++
T Consensus 73 g~--~La~aS---------------------------------FD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG 117 (312)
T KOG0645|consen 73 GR--YLASAS---------------------------------FDATVVIWKKEDGEFECVATLEGHENEVKCVAWSASG 117 (312)
T ss_pred Cc--EEEEee---------------------------------ccceEEEeecCCCceeEEeeeeccccceeEEEEcCCC
Confidence 22 776522 1358889976544 688899877 5999999987
Q ss_pred CeEEEEeC-CeEEEEECCCCce---eEEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCcceeccccCC
Q 003907 203 RIVAVGLA-TQIYCFDALTLEN---KFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLT 278 (787)
Q Consensus 203 ~~LaV~~~-~~I~iwD~~T~e~---l~tl~t~p~p~~~~~~~~~~~~~~~~lAlspr~LAyas~~~~l~~~g~~s~q~lt 278 (787)
++||++.- ..|.||.+...+. ...|..|..- +--+.+.|
T Consensus 118 ~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqD-------------VK~V~WHP------------------------ 160 (312)
T KOG0645|consen 118 NYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQD-------------VKHVIWHP------------------------ 160 (312)
T ss_pred CEEEEeeCCCeEEEEEecCCCcEEEEeeecccccc-------------ccEEEEcC------------------------
Confidence 89999875 4699998764332 2222222210 01112211
Q ss_pred CCCcCCCcCCCCCceeEeeehhhhhhhhcccceeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECCC
Q 003907 279 PSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVT 358 (787)
Q Consensus 279 ~~~~s~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s 358 (787)
. .-.++++++|.+|++|+-..
T Consensus 161 ----------t-------------------------------------------------~dlL~S~SYDnTIk~~~~~~ 181 (312)
T KOG0645|consen 161 ----------T-------------------------------------------------EDLLFSCSYDNTIKVYRDED 181 (312)
T ss_pred ----------C-------------------------------------------------cceeEEeccCCeEEEEeecC
Confidence 0 00122456788899997662
Q ss_pred ---CcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCc-cccC---------CcceEEEEE
Q 003907 359 ---RAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHK-YDWN---------SSHVHLYKL 425 (787)
Q Consensus 359 ---~~~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~-~~~~---------~s~~~l~~l 425 (787)
-.++++|.+|+..|.+++|++.|..|+++++|++ ++||........-.++.-. ..|. .....+++-
T Consensus 182 dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~t-v~Iw~~~~~~~~~~sr~~Y~v~W~~~~IaS~ggD~~i~lf~~ 260 (312)
T KOG0645|consen 182 DDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGT-VSIWRLYTDLSGMHSRALYDVPWDNGVIASGGGDDAIRLFKE 260 (312)
T ss_pred CCCeeEEEEecCccceEEEEEecCCCceEEEecCCcc-eEeeeeccCcchhcccceEeeeecccceEeccCCCEEEEEEe
Confidence 2578999999999999999999999999999775 9999843211000000000 0010 000112211
Q ss_pred e--------------cccccccEEEEEEccC-CCEEEEEeCCCeEEEEeCC
Q 003907 426 H--------------RGITSATIQDICFSHY-SQWIAIVSSKGTCHVFVLS 461 (787)
Q Consensus 426 ~--------------rG~~~a~I~slaFSpD-g~~LAs~S~dgTVhIwdl~ 461 (787)
. .+.|...|.+++|.|. +..|+++++||+|++|.+.
T Consensus 261 s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 261 SDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred cCCCCCchHHHHHhhhcccccccceEEEcCCCCCceeecCCCceEEEEEec
Confidence 1 1223336999999995 6899999999999999874
No 65
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.59 E-value=1.6e-13 Score=162.24 Aligned_cols=250 Identities=16% Similarity=0.175 Sum_probs=173.7
Q ss_pred CCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccC------CCc-----------eeEeeeeccCcEEEEEEe
Q 003907 53 EDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVED------ASN-----------FNELVSKRDGPVSFLQMQ 114 (787)
Q Consensus 53 ~~~~~~v~wa~Fd~l~~~~~~~~~vL~lG~~~G-~qVWdv~~------~~~-----------~~ells~~dg~V~~v~~l 114 (787)
++|...|..++|-. ++++|+.|+++. +.||.-.. .+. +..++..|++.|..+.+.
T Consensus 66 ~~h~~sv~CVR~S~-------dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Ws 138 (942)
T KOG0973|consen 66 DDHDGSVNCVRFSP-------DGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWS 138 (942)
T ss_pred ccccCceeEEEECC-------CCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccC
Confidence 34667788999864 589999999998 79999872 112 456777899999999999
Q ss_pred cCCCCCCCCCCccccCcEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCC-C
Q 003907 115 PFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFR-S 193 (787)
Q Consensus 115 P~P~~~~~~d~F~~srpLLavV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~v~tL~f~-s 193 (787)
|+ ++ +||.++. +++|.+||.++.+.+.+++.+ +
T Consensus 139 p~-----------~~--~lvS~s~---------------------------------DnsViiwn~~tF~~~~vl~~H~s 172 (942)
T KOG0973|consen 139 PD-----------DS--LLVSVSL---------------------------------DNSVIIWNAKTFELLKVLRGHQS 172 (942)
T ss_pred CC-----------cc--EEEEecc---------------------------------cceEEEEccccceeeeeeecccc
Confidence 85 23 7765432 368999999999999999865 6
Q ss_pred cEEEEEecC--CeEEEE-eCCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEcc--ceEEEecCCceecC
Q 003907 194 SVCMVRCSP--RIVAVG-LATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP--RWLAYASNTLLLSN 268 (787)
Q Consensus 194 ~V~sV~~s~--~~LaV~-~~~~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~~~~~lAlsp--r~LAyas~~~~l~~ 268 (787)
.|-.|.|+| +++|+- .|..|++|+..+....+++..+-.. +.+. .-+..+.++| .+||.+.
T Consensus 173 ~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~---~~~~----T~f~RlSWSPDG~~las~n------- 238 (942)
T KOG0973|consen 173 LVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEE---SPLT----TFFLRLSWSPDGHHLASPN------- 238 (942)
T ss_pred cccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhh---CCCc----ceeeecccCCCcCeecchh-------
Confidence 899999999 899985 4567999998877776766542210 0000 0011122222 2222211
Q ss_pred cceeccccCCCCCcCCCcCCCCCceeEeeehhhhhhhhcccceeecccccccCCCCCCCCcccCCccccccccccccCCC
Q 003907 269 SGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNA 348 (787)
Q Consensus 269 ~g~~s~q~lt~~~~s~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~d 348 (787)
++ -...
T Consensus 239 -------------------------------------------------------------A~-------------n~~~ 244 (942)
T KOG0973|consen 239 -------------------------------------------------------------AV-------------NGGK 244 (942)
T ss_pred -------------------------------------------------------------hc-------------cCCc
Confidence 00 0112
Q ss_pred ceEEEEECCCCcEEEEeccCCCCeEEEEECCC--------CC---------EEEEEEcCCCEEEEEeCCCCcccCCCCCC
Q 003907 349 GIVVVKDFVTRAIISQFKAHTSPISALCFDPS--------GT---------LLVTASVYGNNINIFRIMPSCMRSGSGNH 411 (787)
Q Consensus 349 G~V~IwDl~s~~~v~~~~aH~~pIsaLaFSpd--------G~---------lLATaS~dG~~IrVWdi~~~~~~~~~g~~ 411 (787)
-++.|.+-.+-+.-..|-+|.+|+.+++|+|. |+ .+|+||.|+ .|-||....
T Consensus 245 ~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDr-SlSVW~T~~---------- 313 (942)
T KOG0973|consen 245 STIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDR-SLSVWNTAL---------- 313 (942)
T ss_pred ceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCc-cEEEEecCC----------
Confidence 34566666555666788999999999999982 11 578888865 599999732
Q ss_pred ccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEeCCC
Q 003907 412 KYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSP 462 (787)
Q Consensus 412 ~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~~ 462 (787)
.+++...+. .....|.||+|||||.-|.++|.||||.++.+++
T Consensus 314 -------~RPl~vi~~-lf~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee 356 (942)
T KOG0973|consen 314 -------PRPLFVIHN-LFNKSIVDMSWSPDGFSLFACSLDGTVALIHFEE 356 (942)
T ss_pred -------CCchhhhhh-hhcCceeeeeEcCCCCeEEEEecCCeEEEEEcch
Confidence 144544332 2235699999999999999999999999998864
No 66
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.59 E-value=4.3e-13 Score=138.54 Aligned_cols=204 Identities=20% Similarity=0.229 Sum_probs=151.2
Q ss_pred eEeeeeccCcEEEEEEecCCCCCCCCCCccccCcEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEE
Q 003907 98 NELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRF 177 (787)
Q Consensus 98 ~ells~~dg~V~~v~~lP~P~~~~~~d~F~~srpLLavV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVrl 177 (787)
...+++|.+.|..+++.|. +.-+||. |+ .+++||+
T Consensus 7 ~~~~~gh~~r~W~~awhp~------------~g~ilAs--cg-------------------------------~Dk~vri 41 (312)
T KOG0645|consen 7 EQKLSGHKDRVWSVAWHPG------------KGVILAS--CG-------------------------------TDKAVRI 41 (312)
T ss_pred EEeecCCCCcEEEEEeccC------------CceEEEe--ec-------------------------------CCceEEE
Confidence 4567888889999999873 1225654 21 1379999
Q ss_pred EECCC---CeEEEEEe--CCCcEEEEEecC--CeEEEE-eCCeEEEEECC--CCceeEEEEecCCcccCCCCcccccccc
Q 003907 178 YSFQS---HCYEHVLR--FRSSVCMVRCSP--RIVAVG-LATQIYCFDAL--TLENKFSVLTYPVPQLAGQGAVGINVGY 247 (787)
Q Consensus 178 Wdlkt---g~~v~tL~--f~s~V~sV~~s~--~~LaV~-~~~~I~iwD~~--T~e~l~tl~t~p~p~~~~~~~~~~~~~~ 247 (787)
|++.. -.+...|. +.-.|++|+++| ++||++ ++.++.||.=. ++++..+|++|.+. +
T Consensus 42 w~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnE-------------V 108 (312)
T KOG0645|consen 42 WSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDGEFECVATLEGHENE-------------V 108 (312)
T ss_pred EecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceEEEeecCCCceeEEeeeeccccc-------------e
Confidence 99984 34555553 335899999988 888875 57789999643 56788888888873 2
Q ss_pred ceeEEcc--ceEEEecCCceecCcceeccccCCCCCcCCCcCCCCCceeEeeehhhhhhhhcccceeecccccccCCCCC
Q 003907 248 GPMAVGP--RWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGS 325 (787)
Q Consensus 248 ~~lAlsp--r~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s 325 (787)
-.+|+++ +|||.++.
T Consensus 109 K~Vaws~sG~~LATCSR--------------------------------------------------------------- 125 (312)
T KOG0645|consen 109 KCVAWSASGNYLATCSR--------------------------------------------------------------- 125 (312)
T ss_pred eEEEEcCCCCEEEEeeC---------------------------------------------------------------
Confidence 3566665 66666553
Q ss_pred CCCcccCCccccccccccccCCCceEEEEECCC---CcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCC
Q 003907 326 SSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVT---RAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPS 402 (787)
Q Consensus 326 ~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s---~~~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~ 402 (787)
|..|-||.+.. -.++..|+.|+..|-.+.|+|.-.+|+|+|-|. +|++|+-.+.
T Consensus 126 ----------------------DKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~dlL~S~SYDn-TIk~~~~~~d 182 (312)
T KOG0645|consen 126 ----------------------DKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDLLFSCSYDN-TIKVYRDEDD 182 (312)
T ss_pred ----------------------CCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCcceeEEeccCC-eEEEEeecCC
Confidence 34566776653 357889999999999999999999999999955 5999986421
Q ss_pred cccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEeCC
Q 003907 403 CMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLS 461 (787)
Q Consensus 403 ~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~ 461 (787)
+ ...++.+|. |++ ..|++++|+++|..|+++++|+|++||.+-
T Consensus 183 ------d--------dW~c~~tl~-g~~-~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~ 225 (312)
T KOG0645|consen 183 ------D--------DWECVQTLD-GHE-NTVWSLAFDNIGSRLVSCSDDGTVSIWRLY 225 (312)
T ss_pred ------C--------CeeEEEEec-Ccc-ceEEEEEecCCCceEEEecCCcceEeeeec
Confidence 1 124666664 433 479999999999999999999999999864
No 67
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.59 E-value=4.8e-14 Score=151.88 Aligned_cols=282 Identities=15% Similarity=0.148 Sum_probs=179.6
Q ss_pred CCCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCc--eeEeeeeccCcEEEEEEecCCCCCCCCCCccc
Q 003907 52 SEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASN--FNELVSKRDGPVSFLQMQPFPVKDDGCEGFRK 128 (787)
Q Consensus 52 ~~~~~~~v~wa~Fd~l~~~~~~~~~vL~lG~~~G-~qVWdv~~~~~--~~ells~~dg~V~~v~~lP~P~~~~~~d~F~~ 128 (787)
..+|+|+|-++.|-- .++.|++++.+. .-+|++..... +..++-+|..+|..+.++|+
T Consensus 220 l~~htdEVWfl~FS~-------nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPD------------ 280 (519)
T KOG0293|consen 220 LQDHTDEVWFLQFSH-------NGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPD------------ 280 (519)
T ss_pred HhhCCCcEEEEEEcC-------CCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCC------------
Confidence 567999999999953 589999999875 78899866554 24556678889999999985
Q ss_pred cCcEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCC--CcEEEEEecC--Ce
Q 003907 129 LHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFR--SSVCMVRCSP--RI 204 (787)
Q Consensus 129 srpLLavV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~v~tL~f~--s~V~sV~~s~--~~ 204 (787)
.|.|| .++.+ ..+++||..+|+..+.+... -++.++++.| ..
T Consensus 281 dryLl-aCg~~---------------------------------e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~ 326 (519)
T KOG0293|consen 281 DRYLL-ACGFD---------------------------------EVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFR 326 (519)
T ss_pred CCeEE-ecCch---------------------------------HheeeccCCcchhhhhcccCcCCCcceeEEccCCce
Confidence 34454 22221 35999999999999988755 4788888888 45
Q ss_pred EEEE-eCCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEcc--ceEEEecCCceecCcceeccccCCCCC
Q 003907 205 VAVG-LATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP--RWLAYASNTLLLSNSGRLSPQNLTPSG 281 (787)
Q Consensus 205 LaV~-~~~~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~~~~~lAlsp--r~LAyas~~~~l~~~g~~s~q~lt~~~ 281 (787)
+++| .+.+|.-||+. +..+..-.+--.| -...+|+.+ +|+-....+..+.-
T Consensus 327 ~V~Gs~dr~i~~wdlD-gn~~~~W~gvr~~------------~v~dlait~Dgk~vl~v~~d~~i~l------------- 380 (519)
T KOG0293|consen 327 FVTGSPDRTIIMWDLD-GNILGNWEGVRDP------------KVHDLAITYDGKYVLLVTVDKKIRL------------- 380 (519)
T ss_pred eEecCCCCcEEEecCC-cchhhcccccccc------------eeEEEEEcCCCcEEEEEecccceee-------------
Confidence 5555 46689999965 4333333221111 023466655 44433322211100
Q ss_pred cCCCcCCCCCceeEeeehhhhhhhhcccceeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECCCCcE
Q 003907 282 VSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAI 361 (787)
Q Consensus 282 ~s~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~ 361 (787)
..+.|+ +-.|++.. +.-..+.+.+-+++.. ...-.+..+++||+...+.
T Consensus 381 ------------~~~e~~-----~dr~lise----------~~~its~~iS~d~k~~----LvnL~~qei~LWDl~e~~l 429 (519)
T KOG0293|consen 381 ------------YNREAR-----VDRGLISE----------EQPITSFSISKDGKLA----LVNLQDQEIHLWDLEENKL 429 (519)
T ss_pred ------------echhhh-----hhhccccc----------cCceeEEEEcCCCcEE----EEEcccCeeEEeecchhhH
Confidence 000000 00011100 0000001111122221 1123567899999999999
Q ss_pred EEEeccCCCC--eEEEEECC-CCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEE
Q 003907 362 ISQFKAHTSP--ISALCFDP-SGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDIC 438 (787)
Q Consensus 362 v~~~~aH~~p--IsaLaFSp-dG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~sla 438 (787)
+..+.+|+.. |-.-||-- +.+++|+||+|++ |.||+-.. | ..+.+|. |+. ..|.+++
T Consensus 430 v~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~k-vyIWhr~s-------g----------kll~~Ls-GHs-~~vNcVs 489 (519)
T KOG0293|consen 430 VRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSK-VYIWHRIS-------G----------KLLAVLS-GHS-KTVNCVS 489 (519)
T ss_pred HHHhhcccccceEEEeccCCCCcceEEecCCCce-EEEEEccC-------C----------ceeEeec-CCc-ceeeEEe
Confidence 9999999653 44447754 5689999999665 99999754 3 4666774 543 5699999
Q ss_pred EccCC-CEEEEEeCCCeEEEEeCCCC
Q 003907 439 FSHYS-QWIAIVSSKGTCHVFVLSPF 463 (787)
Q Consensus 439 FSpDg-~~LAs~S~dgTVhIwdl~~~ 463 (787)
|+|.. .++|++|+||||+||...+.
T Consensus 490 wNP~~p~m~ASasDDgtIRIWg~~~~ 515 (519)
T KOG0293|consen 490 WNPADPEMFASASDDGTIRIWGPSDN 515 (519)
T ss_pred cCCCCHHHhhccCCCCeEEEecCCcc
Confidence 99965 78999999999999988754
No 68
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.58 E-value=1.5e-13 Score=144.03 Aligned_cols=242 Identities=17% Similarity=0.252 Sum_probs=153.6
Q ss_pred CCCCcEEEEEEeeccCCCCCCCeEEEEEecCcEEEEEccCCCceeEeeeeccCcEEEEEEecCCCCCCCCCCccccCcEE
Q 003907 54 DLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNGFQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFL 133 (787)
Q Consensus 54 ~~~~~v~wa~Fd~l~~~~~~~~~vL~lG~~~G~qVWdv~~~~~~~ells~~dg~V~~v~~lP~P~~~~~~d~F~~srpLL 133 (787)
.+...|+-+.|-- ..+++..|.++-++++|++. + -...+..|+++|++|+..+. .. .+
T Consensus 52 ~~~~plL~c~F~d-------~~~~~~G~~dg~vr~~Dln~-~-~~~~igth~~~i~ci~~~~~-----------~~--~v 109 (323)
T KOG1036|consen 52 KHGAPLLDCAFAD-------ESTIVTGGLDGQVRRYDLNT-G-NEDQIGTHDEGIRCIEYSYE-----------VG--CV 109 (323)
T ss_pred ecCCceeeeeccC-------CceEEEeccCceEEEEEecC-C-cceeeccCCCceEEEEeecc-----------CC--eE
Confidence 4667788888852 23455555555699999954 4 35678899999999998841 12 33
Q ss_pred EEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCCcEEEEEecCCeEEEEe-CCe
Q 003907 134 LVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRSSVCMVRCSPRIVAVGL-ATQ 212 (787)
Q Consensus 134 avV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~v~tL~f~s~V~sV~~s~~~LaV~~-~~~ 212 (787)
++| +|| ++|+|||.+....+.++.-...|+++..+.++|+||. +.+
T Consensus 110 --Isg---------------------sWD----------~~ik~wD~R~~~~~~~~d~~kkVy~~~v~g~~LvVg~~~r~ 156 (323)
T KOG1036|consen 110 --ISG---------------------SWD----------KTIKFWDPRNKVVVGTFDQGKKVYCMDVSGNRLVVGTSDRK 156 (323)
T ss_pred --EEc---------------------ccC----------ccEEEEeccccccccccccCceEEEEeccCCEEEEeecCce
Confidence 343 444 6999999998777777777789999999999999955 568
Q ss_pred EEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCcceeccccCCCCCcCCCcCCCCCc
Q 003907 213 IYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSS 292 (787)
Q Consensus 213 I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~~~~~lAlspr~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~sp~~g~ 292 (787)
+.+||+++++..++..+.+.. +.+..+++-|.-=.|+-+. --||+
T Consensus 157 v~iyDLRn~~~~~q~reS~lk-----------yqtR~v~~~pn~eGy~~sS----ieGRV-------------------- 201 (323)
T KOG1036|consen 157 VLIYDLRNLDEPFQRRESSLK-----------YQTRCVALVPNGEGYVVSS----IEGRV-------------------- 201 (323)
T ss_pred EEEEEcccccchhhhccccce-----------eEEEEEEEecCCCceEEEe----ecceE--------------------
Confidence 999999999877765554332 2233444433111111000 01222
Q ss_pred eeEeeehhhhhhhhcccceeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCe
Q 003907 293 LVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPI 372 (787)
Q Consensus 293 lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~v~~~~aH~~pI 372 (787)
++.+--++ +-+ ..|++...|++... +++-. --||
T Consensus 202 -avE~~d~s--~~~--~skkyaFkCHr~~~-------------------------~~~~~----------------~yPV 235 (323)
T KOG1036|consen 202 -AVEYFDDS--EEA--QSKKYAFKCHRLSE-------------------------KDTEI----------------IYPV 235 (323)
T ss_pred -EEEccCCc--hHH--hhhceeEEeeeccc-------------------------CCceE----------------EEEe
Confidence 11111110 000 00233333332110 11100 1389
Q ss_pred EEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeC
Q 003907 373 SALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSS 451 (787)
Q Consensus 373 saLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~LAs~S~ 451 (787)
++|+|+|--..||||+.||- |.+||+.+. .++.+|.+- ...|.+++|+.||..||++++
T Consensus 236 Nai~Fhp~~~tfaTgGsDG~-V~~Wd~~~r-----------------Krl~q~~~~--~~SI~slsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 236 NAIAFHPIHGTFATGGSDGI-VNIWDLFNR-----------------KRLKQLAKY--ETSISSLSFSMDGSLLAIASS 294 (323)
T ss_pred ceeEeccccceEEecCCCce-EEEccCcch-----------------hhhhhccCC--CCceEEEEeccCCCeEEEEec
Confidence 99999998888999999774 999998541 466666542 235999999999999999975
No 69
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.58 E-value=5.3e-14 Score=162.26 Aligned_cols=212 Identities=13% Similarity=0.185 Sum_probs=151.1
Q ss_pred CEEEEEECCCCeEEEEEe-CCCcEEEEEecC--CeEEEEeCC-eEEEEECCCCceeEEEEecCCcccCCCCccccccccc
Q 003907 173 TAVRFYSFQSHCYEHVLR-FRSSVCMVRCSP--RIVAVGLAT-QIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYG 248 (787)
Q Consensus 173 ~tVrlWdlktg~~v~tL~-f~s~V~sV~~s~--~~LaV~~~~-~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~~~~ 248 (787)
++|++||-+=|.+++.+. +.++|+.|.|.+ -+++.|.|+ +|++|+..+-+++++|.+|-.= ..
T Consensus 31 G~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclftL~GHlDY-------------VR 97 (1202)
T KOG0292|consen 31 GVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTLLGHLDY-------------VR 97 (1202)
T ss_pred ceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccceehhhhccccce-------------eE
Confidence 589999999999999885 557999999988 466666655 7999999999999999887541 11
Q ss_pred eeEEccceEEEecCCceecCcceeccccCCCCCcCCCcCCCCCceeEeeehhhhhhhhcccceeecccccccCCCCCCCC
Q 003907 249 PMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSP 328 (787)
Q Consensus 249 ~lAlspr~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~ 328 (787)
.+.|.+. +|
T Consensus 98 t~~FHhe-----------------------------------------------------------------yP------ 106 (1202)
T KOG0292|consen 98 TVFFHHE-----------------------------------------------------------------YP------ 106 (1202)
T ss_pred EeeccCC-----------------------------------------------------------------Cc------
Confidence 2222110 00
Q ss_pred cccCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCC
Q 003907 329 VSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGS 408 (787)
Q Consensus 329 ~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~ 408 (787)
| +.+++.|.+|+||+..++++++.+.+|..-|.|..|+|...++++||-|- +|||||+.-....+..
T Consensus 107 ------W------IlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQ-TVRVWDisGLRkk~~~ 173 (1202)
T KOG0292|consen 107 ------W------ILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQ-TVRVWDISGLRKKNKA 173 (1202)
T ss_pred ------e------EEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecccc-eEEEEeecchhccCCC
Confidence 0 12345688999999999999999999999999999999999999999955 5999998532111100
Q ss_pred -C--------CC-ccccCC--cceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEeCCCCCC-c-cccccccC
Q 003907 409 -G--------NH-KYDWNS--SHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGG-D-SGFQTLSS 474 (787)
Q Consensus 409 -g--------~~-~~~~~~--s~~~l~~l~rG~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~~~gg-~-~~~~~H~~ 474 (787)
| .. ..++-+ ...-.+.| .|++++ |.-++|.|.--.|++|++|.-|++|.++..+. + -+-++|..
T Consensus 174 pg~~e~~~~~~~~~~dLfg~~DaVVK~VL-EGHDRG-VNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~n 251 (1202)
T KOG0292|consen 174 PGSLEDQMRGQQGNSDLFGQTDAVVKHVL-EGHDRG-VNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYN 251 (1202)
T ss_pred CCCchhhhhccccchhhcCCcCeeeeeee-cccccc-cceEEecCCcceEEecCCcceeeEEEeccccceeehhhhcccC
Confidence 0 00 011111 11122233 465544 88899999999999999999999999986544 2 24578876
Q ss_pred CCCCCcccC
Q 003907 475 QGGDPYLFP 483 (787)
Q Consensus 475 ~~~~~~~~~ 483 (787)
.+.+-.+.|
T Consensus 252 nVssvlfhp 260 (1202)
T KOG0292|consen 252 NVSSVLFHP 260 (1202)
T ss_pred CcceEEecC
Confidence 665555554
No 70
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.57 E-value=1.9e-13 Score=150.56 Aligned_cols=111 Identities=16% Similarity=0.219 Sum_probs=83.3
Q ss_pred ccccCCCceEEEEECCCCc-EEEEec-----cCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCcccc
Q 003907 342 GADMDNAGIVVVKDFVTRA-IISQFK-----AHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDW 415 (787)
Q Consensus 342 ~~s~~~dG~V~IwDl~s~~-~v~~~~-----aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~ 415 (787)
+.+++.||+++|||+.+-+ ....|+ +-.-+++.++|+|||+++|+|..||. |.+|+.... .
T Consensus 284 FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGS-IQ~W~~~~~------~------ 350 (641)
T KOG0772|consen 284 FLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGS-IQIWDKGSR------T------ 350 (641)
T ss_pred eEEecCCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCCCcchhhhcccCCc-eeeeecCCc------c------
Confidence 4578899999999997643 223332 23458899999999999999999886 999997321 1
Q ss_pred CCcceEEEEEeccccc-ccEEEEEEccCCCEEEEEeCCCeEEEEeCCCCCCccc
Q 003907 416 NSSHVHLYKLHRGITS-ATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSG 468 (787)
Q Consensus 416 ~~s~~~l~~l~rG~~~-a~I~slaFSpDg~~LAs~S~dgTVhIwdl~~~gg~~~ 468 (787)
.+..+..+..+.. ..|+||+||+||++|++-+.|+|++||||..+..+..
T Consensus 351 ---v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~ 401 (641)
T KOG0772|consen 351 ---VRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLN 401 (641)
T ss_pred ---cccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccccccchh
Confidence 1233334333322 2699999999999999999999999999998766543
No 71
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.57 E-value=3.1e-13 Score=147.56 Aligned_cols=110 Identities=18% Similarity=0.370 Sum_probs=82.7
Q ss_pred cccCCCceEEEEECCCC-cEEEEeccCCCCeEEEEECCC-CCEEEEEEcCCCEEEEEeCCCCcccCCCCCCcc--ccC-C
Q 003907 343 ADMDNAGIVVVKDFVTR-AIISQFKAHTSPISALCFDPS-GTLLVTASVYGNNINIFRIMPSCMRSGSGNHKY--DWN-S 417 (787)
Q Consensus 343 ~s~~~dG~V~IwDl~s~-~~v~~~~aH~~pIsaLaFSpd-G~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~--~~~-~ 417 (787)
++++.|++|.+||+++. +++.+|.+|...|..|.|||. .+.|||++.|++ +.|||+..- |.... +.. .
T Consensus 289 AT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~r-l~vWDls~i------g~eq~~eda~dg 361 (422)
T KOG0264|consen 289 ATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRR-LNVWDLSRI------GEEQSPEDAEDG 361 (422)
T ss_pred EeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCc-EEEEecccc------ccccChhhhccC
Confidence 34567999999999985 478899999999999999995 778999999776 899999542 11100 001 1
Q ss_pred cceEEEEEecccccccEEEEEEccCCCE-EEEEeCCCeEEEEeCC
Q 003907 418 SHVHLYKLHRGITSATIQDICFSHYSQW-IAIVSSKGTCHVFVLS 461 (787)
Q Consensus 418 s~~~l~~l~rG~~~a~I~slaFSpDg~~-LAs~S~dgTVhIwdl~ 461 (787)
-...++ .++| |.+.|.+++|+|.--| ||+++.|+.++||.+.
T Consensus 362 ppEllF-~HgG-H~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s 404 (422)
T KOG0264|consen 362 PPELLF-IHGG-HTAKVSDFSWNPNEPWTIASVAEDNILQIWQMA 404 (422)
T ss_pred CcceeE-EecC-cccccccccCCCCCCeEEEEecCCceEEEeecc
Confidence 112333 3566 4578999999998866 6778899999999986
No 72
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.56 E-value=5.9e-13 Score=142.60 Aligned_cols=221 Identities=15% Similarity=0.167 Sum_probs=154.8
Q ss_pred EEEEEecC-cEEEEEccCCCceeEee---eeccCcEEEEEEecCCCCCCCCCCccccCcEEEEEEcCCCCCCCCCCCcCC
Q 003907 77 VLLLGYQN-GFQVLDVEDASNFNELV---SKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSH 152 (787)
Q Consensus 77 vL~lG~~~-G~qVWdv~~~~~~~ell---s~~dg~V~~v~~lP~P~~~~~~d~F~~srpLLavV~~d~~~~~~~~~~~~~ 152 (787)
.|+++..+ .+++|-.+...++.+.+ .+|.++|.+|.+.++. . .+ +++
T Consensus 161 ~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sg-----------t--r~--~Sg-------------- 211 (423)
T KOG0313|consen 161 LFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSG-----------T--RF--CSG-------------- 211 (423)
T ss_pred eEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCC-----------C--eE--Eee--------------
Confidence 45555554 69999987765555443 3688899999988542 2 22 222
Q ss_pred CCCcccCCcCCCCCCCCCCCCEEEEEEC-------------------------CCCeEEEEEeCC-CcEEEEEecCC--e
Q 003907 153 LGGVRDGMMDSQSGNCVNSPTAVRFYSF-------------------------QSHCYEHVLRFR-SSVCMVRCSPR--I 204 (787)
Q Consensus 153 ~~~~r~g~~~~~~~~~~~~p~tVrlWdl-------------------------ktg~~v~tL~f~-s~V~sV~~s~~--~ 204 (787)
+| +++|+||+. .++..+.+|..| .+|.+|-|++. .
T Consensus 212 -------S~----------D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d~~v~ 274 (423)
T KOG0313|consen 212 -------SW----------DTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSDATVI 274 (423)
T ss_pred -------cc----------cceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcCCCce
Confidence 33 378999982 123345556544 58999999884 3
Q ss_pred EEEEeCCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEcc--ceEEEecCCceecCcceeccccCCCCCc
Q 003907 205 VAVGLATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP--RWLAYASNTLLLSNSGRLSPQNLTPSGV 282 (787)
Q Consensus 205 LaV~~~~~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~~~~~lAlsp--r~LAyas~~~~l~~~g~~s~q~lt~~~~ 282 (787)
..++.|.+|+.||+.++++.-++.+... ++.++.+| ++||
T Consensus 275 yS~SwDHTIk~WDletg~~~~~~~~~ks--------------l~~i~~~~~~~Ll~------------------------ 316 (423)
T KOG0313|consen 275 YSVSWDHTIKVWDLETGGLKSTLTTNKS--------------LNCISYSPLSKLLA------------------------ 316 (423)
T ss_pred EeecccceEEEEEeecccceeeeecCcc--------------eeEeecccccceee------------------------
Confidence 3356688999999999998888776322 22333332 2222
Q ss_pred CCCcCCCCCceeEeeehhhhhhhhcccceeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECCCCc--
Q 003907 283 SPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRA-- 360 (787)
Q Consensus 283 s~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~-- 360 (787)
.++.|..+++||-+++.
T Consensus 317 -------------------------------------------------------------~gssdr~irl~DPR~~~gs 335 (423)
T KOG0313|consen 317 -------------------------------------------------------------SGSSDRHIRLWDPRTGDGS 335 (423)
T ss_pred -------------------------------------------------------------ecCCCCceeecCCCCCCCc
Confidence 23456678888887653
Q ss_pred -EEEEeccCCCCeEEEEECCCCC-EEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEE
Q 003907 361 -IISQFKAHTSPISALCFDPSGT-LLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDIC 438 (787)
Q Consensus 361 -~v~~~~aH~~pIsaLaFSpdG~-lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~sla 438 (787)
+..+|.+|+..|.++.++|... +|+++|.|++ +++||++.. ..++|.+.+ +...|.++.
T Consensus 336 ~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t-~klWDvRS~----------------k~plydI~~--h~DKvl~vd 396 (423)
T KOG0313|consen 336 VVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNT-VKLWDVRST----------------KAPLYDIAG--HNDKVLSVD 396 (423)
T ss_pred eeEEeeecchhhhhheecCCCCceEEEEEecCCe-EEEEEeccC----------------CCcceeecc--CCceEEEEe
Confidence 5678999999999999999655 6888888665 999999642 137899976 456899999
Q ss_pred EccCCCEEEEEeCCCeEEEEeCCC
Q 003907 439 FSHYSQWIAIVSSKGTCHVFVLSP 462 (787)
Q Consensus 439 FSpDg~~LAs~S~dgTVhIwdl~~ 462 (787)
|+ ++..|++|+.|.+++||.-.+
T Consensus 397 W~-~~~~IvSGGaD~~l~i~~~~~ 419 (423)
T KOG0313|consen 397 WN-EGGLIVSGGADNKLRIFKGSP 419 (423)
T ss_pred cc-CCceEEeccCcceEEEecccc
Confidence 98 567899999999999997654
No 73
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.56 E-value=4.5e-13 Score=138.13 Aligned_cols=186 Identities=15% Similarity=0.123 Sum_probs=136.2
Q ss_pred CEEEEEECCCCeEEEEEeCC-CcEEEEEecC--CeEEEEe-CCeEEEEECCCCceeEEEEecCCcccCCCCccccccccc
Q 003907 173 TAVRFYSFQSHCYEHVLRFR-SSVCMVRCSP--RIVAVGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYG 248 (787)
Q Consensus 173 ~tVrlWdlktg~~v~tL~f~-s~V~sV~~s~--~~LaV~~-~~~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~~~~ 248 (787)
.++.+|-..+|+.+.+++.+ +.|++++.+. +.|+++. ++.+++||+.|++.+.++.+.. | ..
T Consensus 32 ~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~k~~~-~-------------Vk 97 (327)
T KOG0643|consen 32 STPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQLATWKTNS-P-------------VK 97 (327)
T ss_pred CCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCCcEEEEeecCC-e-------------eE
Confidence 46789999999999999976 5898887765 6777765 4569999999999999987521 1 12
Q ss_pred eeEEcc--ceEEEecCCceecCcceeccccCCCCCcCCCcCCCCCceeEeeehhhhhhhhcccceeecccccccCCCCCC
Q 003907 249 PMAVGP--RWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSS 326 (787)
Q Consensus 249 ~lAlsp--r~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~ 326 (787)
.+.|++ .++.+..+.
T Consensus 98 ~~~F~~~gn~~l~~tD~--------------------------------------------------------------- 114 (327)
T KOG0643|consen 98 RVDFSFGGNLILASTDK--------------------------------------------------------------- 114 (327)
T ss_pred EEeeccCCcEEEEEehh---------------------------------------------------------------
Confidence 233322 222222111
Q ss_pred CCcccCCccccccccccccCCCceEEEEECC-------CCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeC
Q 003907 327 SPVSPNSVWKVGRHAGADMDNAGIVVVKDFV-------TRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRI 399 (787)
Q Consensus 327 ~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~-------s~~~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi 399 (787)
...+.+.|.++|++ +.++...+..+.+.|+.+-|+|-|.+|++|.++|. |++||+
T Consensus 115 -----------------~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~-is~~da 176 (327)
T KOG0643|consen 115 -----------------QMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIAGHEDGS-ISIYDA 176 (327)
T ss_pred -----------------hcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEEEecCCCc-EEEEEc
Confidence 01234567777776 45678888899999999999999999999999886 999999
Q ss_pred CCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEeCCCCCCcccccc
Q 003907 400 MPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQT 471 (787)
Q Consensus 400 ~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~~~gg~~~~~~ 471 (787)
+. | ..+.+-.+ .+...|.+|.||+|..++.++|.|.|.++||+........+.+
T Consensus 177 ~~-------g----------~~~v~s~~-~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~t 230 (327)
T KOG0643|consen 177 RT-------G----------KELVDSDE-EHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYTT 230 (327)
T ss_pred cc-------C----------ceeeechh-hhccccccccccCCcceEEecccCccceeeeccceeeEEEeee
Confidence 65 3 22322222 2345799999999999999999999999999987655554443
No 74
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.55 E-value=1.9e-13 Score=140.07 Aligned_cols=229 Identities=16% Similarity=0.162 Sum_probs=153.4
Q ss_pred EEEEEccCCCceeEeeeec-cCcEEEEEEecCCCCCCCCCCccccCcEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCC
Q 003907 86 FQVLDVEDASNFNELVSKR-DGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQ 164 (787)
Q Consensus 86 ~qVWdv~~~~~~~ells~~-dg~V~~v~~lP~P~~~~~~d~F~~srpLLavV~~d~~~~~~~~~~~~~~~~~r~g~~~~~ 164 (787)
+-|.+++..+.+.+..+-. ...+..|++.++- .+ .+++++||
T Consensus 40 L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~----------e~--~~~~a~GD------------------------- 82 (311)
T KOG0277|consen 40 LFILEVTDPKGIQECQSYDTEDGLFDVAWSENH----------EN--QVIAASGD------------------------- 82 (311)
T ss_pred EEEEecCCCCCeEEEEeeecccceeEeeecCCC----------cc--eEEEEecC-------------------------
Confidence 6677775455566655532 2468888888642 22 44444443
Q ss_pred CCCCCCCCCEEEEEECCC-CeEEEEEe-CCCcEEEEEecC---C-eEEEEeCCeEEEEECCCCceeEEEEecCCcccCCC
Q 003907 165 SGNCVNSPTAVRFYSFQS-HCYEHVLR-FRSSVCMVRCSP---R-IVAVGLATQIYCFDALTLENKFSVLTYPVPQLAGQ 238 (787)
Q Consensus 165 ~~~~~~~p~tVrlWdlkt-g~~v~tL~-f~s~V~sV~~s~---~-~LaV~~~~~I~iwD~~T~e~l~tl~t~p~p~~~~~ 238 (787)
+.++|||+.- ...|+.++ +..+|++|.+|. + +|..+-|++|++||..-.+-+.|+.+|..
T Consensus 83 --------GSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~------ 148 (311)
T KOG0277|consen 83 --------GSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNS------ 148 (311)
T ss_pred --------ceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCcc------
Confidence 4799999743 35677775 446999999987 3 34445688999999776665555554322
Q ss_pred CccccccccceeEEccceEEEecCCceecCcceeccccCCCCCcCCCcCCCCCceeEeeehhhhhhhhcccceeeccccc
Q 003907 239 GAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQ 318 (787)
Q Consensus 239 ~~~~~~~~~~~lAlspr~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~ 318 (787)
+.|.. .++|..+.+
T Consensus 149 ------------------~Iy~a-----------------------~~sp~~~nl------------------------- 162 (311)
T KOG0277|consen 149 ------------------CIYQA-----------------------AFSPHIPNL------------------------- 162 (311)
T ss_pred ------------------EEEEE-----------------------ecCCCCCCe-------------------------
Confidence 11211 011111111
Q ss_pred ccCCCCCCCCcccCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECC-CCCEEEEEEcCCCEEEEE
Q 003907 319 ELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDP-SGTLLVTASVYGNNINIF 397 (787)
Q Consensus 319 ~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~v~~~~aH~~pIsaLaFSp-dG~lLATaS~dG~~IrVW 397 (787)
+++++.||++++||++....-..|.+|...|.++.|+. +-.+|||++.|+ .||+|
T Consensus 163 -----------------------fas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~-~vr~w 218 (311)
T KOG0277|consen 163 -----------------------FASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDN-LVRGW 218 (311)
T ss_pred -----------------------EEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCc-eEEEE
Confidence 23456799999999987544445999999999999987 677899999955 69999
Q ss_pred eCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCC-CEEEEEeCCCeEEEEeCCCCCC-cccccccc
Q 003907 398 RIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYS-QWIAIVSSKGTCHVFVLSPFGG-DSGFQTLS 473 (787)
Q Consensus 398 di~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg-~~LAs~S~dgTVhIwdl~~~gg-~~~~~~H~ 473 (787)
|++.. . .++.+|. |+. -.|..+.|||-. ..||++|.|-|++|||...... ......|+
T Consensus 219 Dir~~------r----------~pl~eL~-gh~-~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~Ht 278 (311)
T KOG0277|consen 219 DIRNL------R----------TPLFELN-GHG-LAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDHHT 278 (311)
T ss_pred ehhhc------c----------ccceeec-CCc-eEEEEEecCcchhhHhhhccccceEEecccccchhhhhhhhccc
Confidence 99652 1 4788884 433 359999999965 6899999999999999874333 22334443
No 75
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.55 E-value=8.5e-14 Score=164.60 Aligned_cols=248 Identities=15% Similarity=0.079 Sum_probs=165.7
Q ss_pred ccccC--CCceEEEEECCC------------CcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCC
Q 003907 342 GADMD--NAGIVVVKDFVT------------RAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSG 407 (787)
Q Consensus 342 ~~s~~--~dG~V~IwDl~s------------~~~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~ 407 (787)
+++++ .||.++||.... .+.+.++..|.+.|+|+.|+|||++||+||+ ++.|.||+-........
T Consensus 28 ~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSD-D~~v~iW~~~~~~~~~~ 106 (942)
T KOG0973|consen 28 FATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSD-DRLVMIWERAEIGSGTV 106 (942)
T ss_pred EecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccC-cceEEEeeecccCCccc
Confidence 34555 678888998642 3456778899999999999999999999999 56799999753100000
Q ss_pred CCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEeCCCCCCccccccccCCCCC---------
Q 003907 408 SGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQTLSSQGGD--------- 478 (787)
Q Consensus 408 ~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~~~gg~~~~~~H~~~~~~--------- 478 (787)
.|..+..-....++.+...|| |...|.+++||||+.+||++|.|++|+||+..+++....+++|.+.++|
T Consensus 107 fgs~g~~~~vE~wk~~~~l~~-H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~Gky 185 (942)
T KOG0973|consen 107 FGSTGGAKNVESWKVVSILRG-HDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVLRGHQSLVKGVSWDPIGKY 185 (942)
T ss_pred ccccccccccceeeEEEEEec-CCCccceeccCCCccEEEEecccceEEEEccccceeeeeeecccccccceEECCccCe
Confidence 011000011111233334456 4467999999999999999999999999999999777788888766533
Q ss_pred -------------------------CcccCCCCCCccccCCCCCcCCcCCCCCceeecceeeEEecCCC-cccc---ccc
Q 003907 479 -------------------------PYLFPVLSLPWWCTSSGISEQQCVLPPPPVTLSVVSRIKYSSFG-WLNT---VSN 529 (787)
Q Consensus 479 -------------------------~~~~~~~~~~~~~~~~~s~~q~~~~~p~~~~l~~v~~i~~~~~~-w~~~---v~~ 529 (787)
.++..+...+++.+.+||++.++++.|++ +.++.+.|.+-.++ |.-. |+-
T Consensus 186 ~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA-~n~~~~~~~IieR~tWk~~~~LvGH 264 (942)
T KOG0973|consen 186 FASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNA-VNGGKSTIAIIERGTWKVDKDLVGH 264 (942)
T ss_pred eeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhh-ccCCcceeEEEecCCceeeeeeecC
Confidence 33444566788899999999999999998 45887777776554 7632 222
Q ss_pred cccc--------------cCCcccccc--ceeeeecccCcc-----cccc-c-------c------ccccCccccEEEEc
Q 003907 530 ASAS--------------SMGKVFVPS--GAVAAVFHNSIA-----HSSQ-H-------V------NSRTNSLEHLLVYT 574 (787)
Q Consensus 530 ~~~~--------------a~~~~~~p~--~~v~~~f~~~~~-----~~~~-~-------~------~~~~~~~~~LlV~s 574 (787)
.+.- ..|.+.-|. -+|+|+=.|+|. +... | . .+=.+.--.||++|
T Consensus 265 ~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~SI~DmsWspdG~~LfacS 344 (942)
T KOG0973|consen 265 SAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNLFNKSIVDMSWSPDGFSLFACS 344 (942)
T ss_pred CCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhhhhhhhcCceeeeeEcCCCCeEEEEe
Confidence 1110 011111121 136777777765 1110 0 0 11123446799999
Q ss_pred CCccEEEEecccCCCCCC
Q 003907 575 PSGYVVQHELLPSIGMGP 592 (787)
Q Consensus 575 ~~G~l~~y~l~p~~g~~~ 592 (787)
-||.|++..+++.+=|+.
T Consensus 345 ~DGtV~~i~Fee~ElG~~ 362 (942)
T KOG0973|consen 345 LDGTVALIHFEEKELGVA 362 (942)
T ss_pred cCCeEEEEEcchHHhCcc
Confidence 999999999998876653
No 76
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.54 E-value=8.6e-13 Score=141.38 Aligned_cols=114 Identities=14% Similarity=0.176 Sum_probs=90.0
Q ss_pred ccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEE
Q 003907 344 DMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLY 423 (787)
Q Consensus 344 s~~~dG~V~IwDl~s~~~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~ 423 (787)
+++.|.+|++||+.++..+.++.+. .++++++.+|.-.+||+||. +..|||||-+.. .|. ....
T Consensus 276 S~SwDHTIk~WDletg~~~~~~~~~-ksl~~i~~~~~~~Ll~~gss-dr~irl~DPR~~-----~gs---------~v~~ 339 (423)
T KOG0313|consen 276 SVSWDHTIKVWDLETGGLKSTLTTN-KSLNCISYSPLSKLLASGSS-DRHIRLWDPRTG-----DGS---------VVSQ 339 (423)
T ss_pred eecccceEEEEEeecccceeeeecC-cceeEeecccccceeeecCC-CCceeecCCCCC-----CCc---------eeEE
Confidence 5678999999999999988888764 68999999999999999999 556999996541 121 2333
Q ss_pred EEecccccccEEEEEEccCC-CEEEEEeCCCeEEEEeCCCCCC-ccccccccCC
Q 003907 424 KLHRGITSATIQDICFSHYS-QWIAIVSSKGTCHVFVLSPFGG-DSGFQTLSSQ 475 (787)
Q Consensus 424 ~l~rG~~~a~I~slaFSpDg-~~LAs~S~dgTVhIwdl~~~gg-~~~~~~H~~~ 475 (787)
.| -|+. ..|.++.|+|.. ..|+++|.|+|+++||+....+ ...+.+|+..
T Consensus 340 s~-~gH~-nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DK 391 (423)
T KOG0313|consen 340 SL-IGHK-NWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDK 391 (423)
T ss_pred ee-ecch-hhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCce
Confidence 44 3544 579999999976 5689999999999999988764 4577888654
No 77
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.53 E-value=3.6e-12 Score=147.09 Aligned_cols=121 Identities=20% Similarity=0.267 Sum_probs=87.0
Q ss_pred ccCCCceEEEEECCCCcEEEEe---ccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcc-cCC-CCC--C--cc-
Q 003907 344 DMDNAGIVVVKDFVTRAIISQF---KAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCM-RSG-SGN--H--KY- 413 (787)
Q Consensus 344 s~~~dG~V~IwDl~s~~~v~~~---~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~-~~~-~g~--~--~~- 413 (787)
-+...|+|.+|++++|-....| .+|..+|..|+.+.-+++++||+.+|. ++.||.....- .+. .|. . .+
T Consensus 465 IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gi-lkfw~f~~k~l~~~l~l~~~~~~iv~h 543 (910)
T KOG1539|consen 465 IGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGI-LKFWDFKKKVLKKSLRLGSSITGIVYH 543 (910)
T ss_pred EeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcce-EEEEecCCcceeeeeccCCCcceeeee
Confidence 3566899999999999998998 699999999999999999999999885 99999854210 000 000 0 00
Q ss_pred ---c-----cCCcceEEEEE--------ecccccccEEEEEEccCCCEEEEEeCCCeEEEEeCCCCCCc
Q 003907 414 ---D-----WNSSHVHLYKL--------HRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGD 466 (787)
Q Consensus 414 ---~-----~~~s~~~l~~l--------~rG~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~~~gg~ 466 (787)
+ .+.....+++. .+|+ ...|++++|||||+||++++.|+||++||+.+....
T Consensus 544 r~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh-~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lI 611 (910)
T KOG1539|consen 544 RVSDLLAIALDDFSIRVVDVVTRKVVREFWGH-GNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLI 611 (910)
T ss_pred ehhhhhhhhcCceeEEEEEchhhhhhHHhhcc-ccceeeeEeCCCCcEEEEeecCCcEEEEeccCccee
Confidence 0 00000111111 1353 467999999999999999999999999999875443
No 78
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.53 E-value=6.2e-14 Score=151.28 Aligned_cols=247 Identities=12% Similarity=0.084 Sum_probs=167.4
Q ss_pred CCCCcEEEEEEeeccCCCCCCCeEEEEEecC-cEEEEEccCCC-ceeEeeeeccCcEEEEEEecCCCCCCCCCCccccCc
Q 003907 54 DLKDQVTWAGFDRLEYGPSVFKQVLLLGYQN-GFQVLDVEDAS-NFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHP 131 (787)
Q Consensus 54 ~~~~~v~wa~Fd~l~~~~~~~~~vL~lG~~~-G~qVWdv~~~~-~~~ells~~dg~V~~v~~lP~P~~~~~~d~F~~srp 131 (787)
-|..+|.-+-|-. ....|+.|..+ -|++|++.... ++..+|.+..|++..+.+-+. .+.
T Consensus 173 ~h~gev~~v~~l~-------~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~------------~~~ 233 (459)
T KOG0288|consen 173 AHEGEVHDVEFLR-------NSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSD------------NKH 233 (459)
T ss_pred ccccccceeEEcc-------CcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCC------------Cce
Confidence 3445555555542 12367777665 48999995422 244566777788999988742 222
Q ss_pred EEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCC-cEEEEEecCCe--EEEE
Q 003907 132 FLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRS-SVCMVRCSPRI--VAVG 208 (787)
Q Consensus 132 LLavV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~v~tL~f~s-~V~sV~~s~~~--LaV~ 208 (787)
.||. + .++.+++|++.+.+..++|..|+ .|+++.+.... ++.+
T Consensus 234 ~iAa--s--------------------------------~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsg 279 (459)
T KOG0288|consen 234 VIAA--S--------------------------------NDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSG 279 (459)
T ss_pred EEee--c--------------------------------CCCceeeeeccchhhhhhhcccccceeeehhhccccceeec
Confidence 4432 1 13689999999999999998774 99999997632 3333
Q ss_pred e-CCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCcceeccccCCCCCcCCCcC
Q 003907 209 L-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTS 287 (787)
Q Consensus 209 ~-~~~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~~~~~lAlspr~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~s 287 (787)
. +.+|++||+....+..++.--.. .+-+.+ ..
T Consensus 280 s~DRtiK~WDl~k~~C~kt~l~~S~--------------cnDI~~-------~~-------------------------- 312 (459)
T KOG0288|consen 280 SADRTIKLWDLQKAYCSKTVLPGSQ--------------CNDIVC-------SI-------------------------- 312 (459)
T ss_pred cccchhhhhhhhhhheecccccccc--------------ccceEe-------cc--------------------------
Confidence 3 45799999987665444321000 000110 00
Q ss_pred CCCCceeEeeehhhhhhhhcccceeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECCCCcEEEEecc
Q 003907 288 PGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKA 367 (787)
Q Consensus 288 p~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~v~~~~a 367 (787)
..+.++..|+.|+.||.++......+..
T Consensus 313 ----------------------------------------------------~~~~SgH~DkkvRfwD~Rs~~~~~sv~~ 340 (459)
T KOG0288|consen 313 ----------------------------------------------------SDVISGHFDKKVRFWDIRSADKTRSVPL 340 (459)
T ss_pred ----------------------------------------------------eeeeecccccceEEEeccCCceeeEeec
Confidence 0012456788999999999999999988
Q ss_pred CCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEE
Q 003907 368 HTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIA 447 (787)
Q Consensus 368 H~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~LA 447 (787)
|. .|++|..+++|..|.+++.|++ +.++|+... . ..+.+.-..-.+....+.+.||||+.|+|
T Consensus 341 gg-~vtSl~ls~~g~~lLsssRDdt-l~viDlRt~------e---------I~~~~sA~g~k~asDwtrvvfSpd~~Yva 403 (459)
T KOG0288|consen 341 GG-RVTSLDLSMDGLELLSSSRDDT-LKVIDLRTK------E---------IRQTFSAEGFKCASDWTRVVFSPDGSYVA 403 (459)
T ss_pred Cc-ceeeEeeccCCeEEeeecCCCc-eeeeecccc------c---------EEEEeeccccccccccceeEECCCCceee
Confidence 85 9999999999999999999775 999998642 1 12333221111223578899999999999
Q ss_pred EEeCCCeEEEEeCCCCCCcccc
Q 003907 448 IVSSKGTCHVFVLSPFGGDSGF 469 (787)
Q Consensus 448 s~S~dgTVhIwdl~~~gg~~~~ 469 (787)
+||.||.|+||++...+.+..+
T Consensus 404 AGS~dgsv~iW~v~tgKlE~~l 425 (459)
T KOG0288|consen 404 AGSADGSVYIWSVFTGKLEKVL 425 (459)
T ss_pred eccCCCcEEEEEccCceEEEEe
Confidence 9999999999999876655443
No 79
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.53 E-value=5.6e-13 Score=139.42 Aligned_cols=264 Identities=16% Similarity=0.170 Sum_probs=171.9
Q ss_pred Ccceeeehhhcccccceeccc-CCCCCCCcEEEEEEeeccCCCCCCCeEEEEEecCcEEEEEccCCCceeEeeeeccCcE
Q 003907 30 ASTVASTVRSAGASVAASISN-ASEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNGFQVLDVEDASNFNELVSKRDGPV 108 (787)
Q Consensus 30 ~~~~~~~~~~~~~s~~~~~~~-~~~~~~~~v~wa~Fd~l~~~~~~~~~vL~lG~~~G~qVWdv~~~~~~~ells~~dg~V 108 (787)
|++=..|||--....+|.... ....+...|+.++|.. |+ .++++.|.++..++||+.. +++ ..+.-|++||
T Consensus 45 A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~Wsd----dg--skVf~g~~Dk~~k~wDL~S-~Q~-~~v~~Hd~pv 116 (347)
T KOG0647|consen 45 AGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSD----DG--SKVFSGGCDKQAKLWDLAS-GQV-SQVAAHDAPV 116 (347)
T ss_pred ecccCCceEEEEEecCCcccchhhhccCCCeEEEEEcc----CC--ceEEeeccCCceEEEEccC-CCe-eeeeecccce
Confidence 445556666654444333322 2344677899999964 31 4566666667799999964 444 5678999999
Q ss_pred EEEEEecCCCCCCCCCCccccCcEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEE
Q 003907 109 SFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHV 188 (787)
Q Consensus 109 ~~v~~lP~P~~~~~~d~F~~srpLLavV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~v~t 188 (787)
+.+.+.+.+. -++| ++ |+|| ++|++||+++...+.+
T Consensus 117 kt~~wv~~~~-----------~~cl--~T---------------------GSWD----------KTlKfWD~R~~~pv~t 152 (347)
T KOG0647|consen 117 KTCHWVPGMN-----------YQCL--VT---------------------GSWD----------KTLKFWDTRSSNPVAT 152 (347)
T ss_pred eEEEEecCCC-----------ccee--Ee---------------------cccc----------cceeecccCCCCeeee
Confidence 9999997532 1244 23 4565 6999999999999999
Q ss_pred EeCCCcEEEEEecCCeEEEEeCC-eEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEcc--ceEEEecCCce
Q 003907 189 LRFRSSVCMVRCSPRIVAVGLAT-QIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP--RWLAYASNTLL 265 (787)
Q Consensus 189 L~f~s~V~sV~~s~~~LaV~~~~-~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~~~~~lAlsp--r~LAyas~~~~ 265 (787)
++.+.+||+.++-..+++|++.+ .|.+|++......+.....|.. .....+|+-. .--|.++
T Consensus 153 ~~LPeRvYa~Dv~~pm~vVata~r~i~vynL~n~~te~k~~~SpLk-----------~Q~R~va~f~d~~~~alGs---- 217 (347)
T KOG0647|consen 153 LQLPERVYAADVLYPMAVVATAERHIAVYNLENPPTEFKRIESPLK-----------WQTRCVACFQDKDGFALGS---- 217 (347)
T ss_pred eeccceeeehhccCceeEEEecCCcEEEEEcCCCcchhhhhcCccc-----------ceeeEEEEEecCCceEeee----
Confidence 99999999999998999998865 5999999776543333333321 1233344322 0001111
Q ss_pred ecCcceeccccCCCCCcCCCcCCCCCceeEeeehhhhhhhhcccceeecccccccCCCCCC-CCcccCCccccccccccc
Q 003907 266 LSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSS-SPVSPNSVWKVGRHAGAD 344 (787)
Q Consensus 266 l~~~g~~s~q~lt~~~~s~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~-~~~s~s~~~~~~~~~~~s 344 (787)
--|++..|.+-.+. + .+.|+..|++..-.... .....+..+.+...++++
T Consensus 218 --iEGrv~iq~id~~~----------------------~-----~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvT 268 (347)
T KOG0647|consen 218 --IEGRVAIQYIDDPN----------------------P-----KDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVT 268 (347)
T ss_pred --ecceEEEEecCCCC----------------------c-----cCceeEEEeccCCCCCCceEEecceEeecccceEEE
Confidence 11444333322100 0 13445556552211111 222333445556667888
Q ss_pred cCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEc
Q 003907 345 MDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASV 389 (787)
Q Consensus 345 ~~~dG~V~IwDl~s~~~v~~~~aH~~pIsaLaFSpdG~lLATaS~ 389 (787)
++.||+...||-.....+.+.+.|..||+|.+|+.+|.++|-|..
T Consensus 269 aGsDGtf~FWDkdar~kLk~s~~~~qpItcc~fn~~G~ifaYA~g 313 (347)
T KOG0647|consen 269 AGSDGTFSFWDKDARTKLKTSETHPQPITCCSFNRNGSIFAYALG 313 (347)
T ss_pred ecCCceEEEecchhhhhhhccCcCCCccceeEecCCCCEEEEEee
Confidence 999999999999888888888899999999999999999998864
No 80
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.53 E-value=3.1e-13 Score=147.50 Aligned_cols=106 Identities=18% Similarity=0.297 Sum_probs=88.8
Q ss_pred ccCCCceEEEEECC--CCcEEEEeccCCCCeEEEEECC-CCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcce
Q 003907 344 DMDNAGIVVVKDFV--TRAIISQFKAHTSPISALCFDP-SGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHV 420 (787)
Q Consensus 344 s~~~dG~V~IwDl~--s~~~v~~~~aH~~pIsaLaFSp-dG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~ 420 (787)
+...|+.+.|||++ +.++....++|+.+|+|++|+| ++.+|||||.|++ |++||++.. . .
T Consensus 245 sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~t-V~LwDlRnL------~----------~ 307 (422)
T KOG0264|consen 245 SVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKT-VALWDLRNL------N----------K 307 (422)
T ss_pred eecCCCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEeccCCCc-EEEeechhc------c----------c
Confidence 45679999999999 5667778899999999999999 6889999999776 999999652 1 3
Q ss_pred EEEEEecccccccEEEEEEccCC-CEEEEEeCCCeEEEEeCCCCCCccc
Q 003907 421 HLYKLHRGITSATIQDICFSHYS-QWIAIVSSKGTCHVFVLSPFGGDSG 468 (787)
Q Consensus 421 ~l~~l~rG~~~a~I~slaFSpDg-~~LAs~S~dgTVhIwdl~~~gg~~~ 468 (787)
+++.+. | +...|..+.|||+- ..||+++.|+.++|||+...+++..
T Consensus 308 ~lh~~e-~-H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~ 354 (422)
T KOG0264|consen 308 PLHTFE-G-HEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQS 354 (422)
T ss_pred Cceecc-C-CCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccC
Confidence 667775 3 44679999999975 7899999999999999998887754
No 81
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.52 E-value=1.7e-13 Score=154.36 Aligned_cols=103 Identities=17% Similarity=0.075 Sum_probs=88.4
Q ss_pred cccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEE
Q 003907 343 ADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHL 422 (787)
Q Consensus 343 ~s~~~dG~V~IwDl~s~~~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l 422 (787)
+.++..+.+++||.++++.+..|+||+..|.+|-.++||+.++|||.||+ |||||+... +++
T Consensus 187 vsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgt-IrlWdLgqQ-----------------rCl 248 (735)
T KOG0308|consen 187 VSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGT-IRLWDLGQQ-----------------RCL 248 (735)
T ss_pred EecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCce-EEeeecccc-----------------cee
Confidence 35677899999999999999999999999999999999999999999886 999999421 567
Q ss_pred EEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEeCCCCCC
Q 003907 423 YKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGG 465 (787)
Q Consensus 423 ~~l~rG~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~~~gg 465 (787)
.++.- +...|+++.-+|+=+.+.+|+.||.|..=|+..+..
T Consensus 249 ~T~~v--H~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~ 289 (735)
T KOG0308|consen 249 ATYIV--HKEGVWALQSSPSFTHVYSGGRDGNIYRTDLRNPAK 289 (735)
T ss_pred eeEEe--ccCceEEEeeCCCcceEEecCCCCcEEecccCCchh
Confidence 66653 334599999999999999999999999988887633
No 82
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.52 E-value=1.5e-12 Score=148.69 Aligned_cols=301 Identities=14% Similarity=0.119 Sum_probs=201.4
Q ss_pred CCcEEEEEEeeccCCCCCCCeEEEEEecCcEEEEEccCCCcee--------EeeeeccCcEEEEEEecCCCCCCCCCCcc
Q 003907 56 KDQVTWAGFDRLEYGPSVFKQVLLLGYQNGFQVLDVEDASNFN--------ELVSKRDGPVSFLQMQPFPVKDDGCEGFR 127 (787)
Q Consensus 56 ~~~v~wa~Fd~l~~~~~~~~~vL~lG~~~G~qVWdv~~~~~~~--------ells~~dg~V~~v~~lP~P~~~~~~d~F~ 127 (787)
+.+|.|+..-. ++...+.|++=.++.+..|.++..+.-. -.+.+|...|+.+.+.-
T Consensus 320 ~~kiks~dv~~----~~~~~~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~------------ 383 (888)
T KOG0306|consen 320 SAKIKSFDVTP----SGGTENTLVLLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSS------------ 383 (888)
T ss_pred hhheeEEEEEe----cCCcceeEEEeecCceEEEEeccCCCCCccccccceeeeccchhheeEEEeec------------
Confidence 45566654432 2222356666557789999997743320 11234556688888763
Q ss_pred ccCcEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCCcEEEEEecC--CeE
Q 003907 128 KLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRSSVCMVRCSP--RIV 205 (787)
Q Consensus 128 ~srpLLavV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~v~tL~f~s~V~sV~~s~--~~L 205 (787)
+.-++ .++. ...++||+.++++++.++... -+++..|-| +.+
T Consensus 384 -d~~~~--~Sga--------------------------------~~SikiWn~~t~kciRTi~~~-y~l~~~Fvpgd~~I 427 (888)
T KOG0306|consen 384 -DSILL--ASGA--------------------------------GESIKIWNRDTLKCIRTITCG-YILASKFVPGDRYI 427 (888)
T ss_pred -Cceee--eecC--------------------------------CCcEEEEEccCcceeEEeccc-cEEEEEecCCCceE
Confidence 21133 2221 146999999999999999876 677777766 677
Q ss_pred EEEeC-CeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEcc--ceEEEecCC--ceecCcceeccccCCCC
Q 003907 206 AVGLA-TQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP--RWLAYASNT--LLLSNSGRLSPQNLTPS 280 (787)
Q Consensus 206 aV~~~-~~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~~~~~lAlsp--r~LAyas~~--~~l~~~g~~s~q~lt~~ 280 (787)
++|.+ +.+.+||+....++.++..|... ..+++++| +..+.++.+ ..+|...-+
T Consensus 428 v~G~k~Gel~vfdlaS~~l~Eti~AHdga-------------IWsi~~~pD~~g~vT~saDktVkfWdf~l~-------- 486 (888)
T KOG0306|consen 428 VLGTKNGELQVFDLASASLVETIRAHDGA-------------IWSISLSPDNKGFVTGSADKTVKFWDFKLV-------- 486 (888)
T ss_pred EEeccCCceEEEEeehhhhhhhhhccccc-------------eeeeeecCCCCceEEecCCcEEEEEeEEEE--------
Confidence 77775 46999999999888888766542 46889988 666666544 233322111
Q ss_pred CcCCCcCCCCCceeEeeehhhhhhhhcccceeecccccc-cCCCCCCCCcccCCccccccccccccCCCceEEEEECCCC
Q 003907 281 GVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQE-LLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTR 359 (787)
Q Consensus 281 ~~s~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~-l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~ 359 (787)
++ .+|+. + |.++-.-.+ +--.........+|+++.... +--|.+|+||-+.+.
T Consensus 487 -----~~-~~gt~---------~-------k~lsl~~~rtLel~ddvL~v~~Spdgk~LaV----sLLdnTVkVyflDtl 540 (888)
T KOG0306|consen 487 -----VS-VPGTQ---------K-------KVLSLKHTRTLELEDDVLCVSVSPDGKLLAV----SLLDNTVKVYFLDTL 540 (888)
T ss_pred -----ec-cCccc---------c-------eeeeeccceEEeccccEEEEEEcCCCcEEEE----EeccCeEEEEEecce
Confidence 00 00000 0 001000000 111223445666777776553 345789999999999
Q ss_pred cEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEE
Q 003907 360 AIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICF 439 (787)
Q Consensus 360 ~~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaF 439 (787)
+.--.+-+|.-||.||.+|||+++++|||. |++|+||-+.- |. +-..+. + |...|.++.|
T Consensus 541 KFflsLYGHkLPV~smDIS~DSklivTgSA-DKnVKiWGLdF-------GD----------CHKS~f-A-HdDSvm~V~F 600 (888)
T KOG0306|consen 541 KFFLSLYGHKLPVLSMDISPDSKLIVTGSA-DKNVKIWGLDF-------GD----------CHKSFF-A-HDDSVMSVQF 600 (888)
T ss_pred eeeeeecccccceeEEeccCCcCeEEeccC-CCceEEecccc-------ch----------hhhhhh-c-ccCceeEEEE
Confidence 999999999999999999999999999999 55699998743 31 222232 2 3456999999
Q ss_pred ccCCCEEEEEeCCCeEEEEeCCCCCCccccccccCC
Q 003907 440 SHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQTLSSQ 475 (787)
Q Consensus 440 SpDg~~LAs~S~dgTVhIwdl~~~gg~~~~~~H~~~ 475 (787)
-|+...+.+++.|+.|+-||-..+.....+.+|...
T Consensus 601 ~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~e 636 (888)
T KOG0306|consen 601 LPKTHLFFTCGKDGKVKQWDGEKFEEIQKLDGHHSE 636 (888)
T ss_pred cccceeEEEecCcceEEeechhhhhhheeeccchhe
Confidence 999999999999999999999999998889888644
No 83
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.52 E-value=3.5e-12 Score=147.27 Aligned_cols=95 Identities=22% Similarity=0.349 Sum_probs=80.2
Q ss_pred ccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEE
Q 003907 344 DMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLY 423 (787)
Q Consensus 344 s~~~dG~V~IwDl~s~~~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~ 423 (787)
.+..|-.|+|+|..+.++++.|.+|...|++++|||||+.|++|+.|++ ||+||+-+ | ..+-
T Consensus 551 ~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~t-Ir~wDlpt-------~----------~lID 612 (910)
T KOG1539|consen 551 IALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDST-IRTWDLPT-------G----------TLID 612 (910)
T ss_pred hhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCc-EEEEeccC-------c----------ceee
Confidence 4456778999999999999999999999999999999999999999776 99999954 2 2343
Q ss_pred EEecccccccEEEEEEccCCCEEEEEeCC-CeEEEEe
Q 003907 424 KLHRGITSATIQDICFSHYSQWIAIVSSK-GTCHVFV 459 (787)
Q Consensus 424 ~l~rG~~~a~I~slaFSpDg~~LAs~S~d-gTVhIwd 459 (787)
-+. ......+++|||+|.+||++..| .-|.+|.
T Consensus 613 ~~~---vd~~~~sls~SPngD~LAT~Hvd~~gIylWs 646 (910)
T KOG1539|consen 613 GLL---VDSPCTSLSFSPNGDFLATVHVDQNGIYLWS 646 (910)
T ss_pred eEe---cCCcceeeEECCCCCEEEEEEecCceEEEEE
Confidence 332 23467899999999999999988 5699996
No 84
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.51 E-value=9e-13 Score=144.00 Aligned_cols=281 Identities=17% Similarity=0.248 Sum_probs=168.9
Q ss_pred CCCcEEEEEEeeccCCCCCCCeEEEEEecCcEEEEEccCCCceeEee-e--eccCcEEEEEEecCCCCCCCCCCccccCc
Q 003907 55 LKDQVTWAGFDRLEYGPSVFKQVLLLGYQNGFQVLDVEDASNFNELV-S--KRDGPVSFLQMQPFPVKDDGCEGFRKLHP 131 (787)
Q Consensus 55 ~~~~v~wa~Fd~l~~~~~~~~~vL~lG~~~G~qVWdv~~~~~~~ell-s--~~dg~V~~v~~lP~P~~~~~~d~F~~srp 131 (787)
....|+.+.|.. ....+|+.|+++.++||.++ |++...+ + ...-|+.++.+.|+..... -+++-|+
T Consensus 212 s~~~I~sv~FHp------~~plllvaG~d~~lrifqvD--Gk~N~~lqS~~l~~fPi~~a~f~p~G~~~i---~~s~rrk 280 (514)
T KOG2055|consen 212 SHGGITSVQFHP------TAPLLLVAGLDGTLRIFQVD--GKVNPKLQSIHLEKFPIQKAEFAPNGHSVI---FTSGRRK 280 (514)
T ss_pred CcCCceEEEecC------CCceEEEecCCCcEEEEEec--CccChhheeeeeccCccceeeecCCCceEE---Eecccce
Confidence 346788888874 12445556666669999994 4443333 2 3457899999888643110 0112223
Q ss_pred EEEEEEcCCCCCCCCCCCcCCCCCcccCCcC----CCCCCCC---CCCCEEEEEECCCCeEEEEEeCCCcEEEEEecC--
Q 003907 132 FLLVVAGEDTNTLAPGQNRSHLGGVRDGMMD----SQSGNCV---NSPTAVRFYSFQSHCYEHVLRFRSSVCMVRCSP-- 202 (787)
Q Consensus 132 LLavV~~d~~~~~~~~~~~~~~~~~r~g~~~----~~~~~~~---~~p~tVrlWdlktg~~v~tL~f~s~V~sV~~s~-- 202 (787)
++-+---...+ - +......++..-+++ .+.++++ .-.+.|.|-..+|++.+++++..+.|.++.|+.
T Consensus 281 y~ysyDle~ak-~---~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~KieG~v~~~~fsSds 356 (514)
T KOG2055|consen 281 YLYSYDLETAK-V---TKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKIEGVVSDFTFSSDS 356 (514)
T ss_pred EEEEeeccccc-c---ccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeeeccEEeeEEEecCC
Confidence 32210000000 0 000000000000000 0001111 123689999999999999999999999999975
Q ss_pred -CeEEEEeCCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEc--cceEEEecCCceecCcceeccccCCC
Q 003907 203 -RIVAVGLATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVG--PRWLAYASNTLLLSNSGRLSPQNLTP 279 (787)
Q Consensus 203 -~~LaV~~~~~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~~~~~lAls--pr~LAyas~~~~l~~~g~~s~q~lt~ 279 (787)
.+++++.+++|++||+.+..++++...... + ....++++ ++|||.+++
T Consensus 357 k~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~----------v--~gts~~~S~ng~ylA~GS~----------------- 407 (514)
T KOG2055|consen 357 KELLASGGTGEVYVWNLRQNSCLHRFVDDGS----------V--HGTSLCISLNGSYLATGSD----------------- 407 (514)
T ss_pred cEEEEEcCCceEEEEecCCcceEEEEeecCc----------c--ceeeeeecCCCceEEeccC-----------------
Confidence 467777788999999999988888764221 0 01223333 256666553
Q ss_pred CCcCCCcCCCCCceeEeeehhhhhhhhcccceeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECC--
Q 003907 280 SGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFV-- 357 (787)
Q Consensus 280 ~~~s~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~-- 357 (787)
.|.|.|||..
T Consensus 408 --------------------------------------------------------------------~GiVNIYd~~s~ 419 (514)
T KOG2055|consen 408 --------------------------------------------------------------------SGIVNIYDGNSC 419 (514)
T ss_pred --------------------------------------------------------------------cceEEEeccchh
Confidence 3445555532
Q ss_pred ----CCcEEEEeccCCCCeEEEEECCCCCEEEEEEcC-CCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccc
Q 003907 358 ----TRAIISQFKAHTSPISALCFDPSGTLLVTASVY-GNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSA 432 (787)
Q Consensus 358 ----s~~~v~~~~aH~~pIsaLaFSpdG~lLATaS~d-G~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a 432 (787)
+.+++..+..-+..|+.|+|+||+.+||-||.. ...+|+--+ |.+ +....|... +..-.
T Consensus 420 ~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHv-PS~------TVFsNfP~~---------n~~vg 483 (514)
T KOG2055|consen 420 FASTNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHV-PSC------TVFSNFPTS---------NTKVG 483 (514)
T ss_pred hccCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhccccceEEEec-cce------eeeccCCCC---------CCccc
Confidence 245666666667889999999999999999862 234777665 321 111222221 11223
Q ss_pred cEEEEEEccCCCEEEEEeCCCeEEEEeCCCC
Q 003907 433 TIQDICFSHYSQWIAIVSSKGTCHVFVLSPF 463 (787)
Q Consensus 433 ~I~slaFSpDg~~LAs~S~dgTVhIwdl~~~ 463 (787)
.|+||+|||.|-+||.|..+|.+++|.|+.|
T Consensus 484 ~vtc~aFSP~sG~lAvGNe~grv~l~kL~hy 514 (514)
T KOG2055|consen 484 HVTCMAFSPNSGYLAVGNEAGRVHLFKLHHY 514 (514)
T ss_pred ceEEEEecCCCceEEeecCCCceeeEeeccC
Confidence 5899999999999999999999999998753
No 85
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.51 E-value=1.4e-12 Score=141.70 Aligned_cols=225 Identities=15% Similarity=0.216 Sum_probs=157.3
Q ss_pred eEEEEEecC-cEEEEEccCCCceeEeeeeccCcEEEEEEecCCCCCCCCCCccccCcEEEEEEcCCCCCCCCCCCcCCCC
Q 003907 76 QVLLLGYQN-GFQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLG 154 (787)
Q Consensus 76 ~vL~lG~~~-G~qVWdv~~~~~~~ells~~dg~V~~v~~lP~P~~~~~~d~F~~srpLLavV~~d~~~~~~~~~~~~~~~ 154 (787)
..+++|..+ ..-++|.+ .+....++.+|.-.|..+.+.|+ +.++..+
T Consensus 232 ~~ilTGG~d~~av~~d~~-s~q~l~~~~Gh~kki~~v~~~~~---------------~~~v~~a---------------- 279 (506)
T KOG0289|consen 232 SKILTGGEDKTAVLFDKP-SNQILATLKGHTKKITSVKFHKD---------------LDTVITA---------------- 279 (506)
T ss_pred CcceecCCCCceEEEecc-hhhhhhhccCcceEEEEEEeccc---------------hhheeec----------------
Confidence 455566565 79999984 57788889999988888887764 1122111
Q ss_pred CcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEe-CCCcEEEEEecC--CeEEEE-eCCeEEEEECCCCceeEEEEec
Q 003907 155 GVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLR-FRSSVCMVRCSP--RIVAVG-LATQIYCFDALTLENKFSVLTY 230 (787)
Q Consensus 155 ~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~v~tL~-f~s~V~sV~~s~--~~LaV~-~~~~I~iwD~~T~e~l~tl~t~ 230 (787)
..+..+++|+.-.......+. +.++|..+...+ .+|..+ .++...+.|+.++.++......
T Consensus 280 ---------------Sad~~i~vws~~~~s~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~ 344 (506)
T KOG0289|consen 280 ---------------SADEIIRVWSVPLSSEPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDE 344 (506)
T ss_pred ---------------CCcceEEeeccccccCccccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeec
Confidence 123589999998776665555 446898888876 566655 4556777889998765544321
Q ss_pred CCcccCCCCccccccccceeEEccceEEEecCCceecCcceeccccCCCCCcCCCcCCCCCceeEeeehhhhhhhhcccc
Q 003907 231 PVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLS 310 (787)
Q Consensus 231 p~p~~~~~~~~~~~~~~~~lAlspr~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~sp~~g~lva~~a~d~sk~la~G~~ 310 (787)
.+ + +.+...+|.|.-|-+
T Consensus 345 ~s---------~--v~~ts~~fHpDgLif--------------------------------------------------- 362 (506)
T KOG0289|consen 345 TS---------D--VEYTSAAFHPDGLIF--------------------------------------------------- 362 (506)
T ss_pred cc---------c--ceeEEeeEcCCceEE---------------------------------------------------
Confidence 11 0 123333333211111
Q ss_pred eeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcC
Q 003907 311 KTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVY 390 (787)
Q Consensus 311 ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~v~~~~aH~~pIsaLaFSpdG~lLATaS~d 390 (787)
..+..||.|+|||+.++..++.|.+|++||.+|+|+.+|.+|||+.+|
T Consensus 363 --------------------------------gtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~add 410 (506)
T KOG0289|consen 363 --------------------------------GTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAADD 410 (506)
T ss_pred --------------------------------eccCCCceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEecC
Confidence 234568999999999999999999999999999999999999999997
Q ss_pred CCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEeC
Q 003907 391 GNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVL 460 (787)
Q Consensus 391 G~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl 460 (787)
|. |++||++... ..+.+.+.. ...|.+++|.+.|++|++++.|=+|++++-
T Consensus 411 ~~-V~lwDLRKl~---------------n~kt~~l~~---~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k 461 (506)
T KOG0289|consen 411 GS-VKLWDLRKLK---------------NFKTIQLDE---KKEVNSLSFDQSGTYLGIAGSDLQVYICKK 461 (506)
T ss_pred Ce-EEEEEehhhc---------------ccceeeccc---cccceeEEEcCCCCeEEeecceeEEEEEec
Confidence 76 9999996420 012223321 225899999999999999998888887763
No 86
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.50 E-value=1.7e-12 Score=136.45 Aligned_cols=262 Identities=21% Similarity=0.192 Sum_probs=152.1
Q ss_pred CCCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCceeEeeeecc----CcEEEEEEecCCCCCCCCCCc
Q 003907 52 SEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNELVSKRD----GPVSFLQMQPFPVKDDGCEGF 126 (787)
Q Consensus 52 ~~~~~~~v~wa~Fd~l~~~~~~~~~vL~lG~~~G-~qVWdv~~~~~~~ells~~d----g~V~~v~~lP~P~~~~~~d~F 126 (787)
.-+|++.|+.+.|-. +++.|++...++ |+||++.+..+- |--+.|. +--..|.|.|+.
T Consensus 82 LKgH~~~vt~~~FsS-------dGK~lat~~~Dr~Ir~w~~~DF~~~-eHr~~R~nve~dhpT~V~FapDc--------- 144 (420)
T KOG2096|consen 82 LKGHKKEVTDVAFSS-------DGKKLATISGDRSIRLWDVRDFENK-EHRCIRQNVEYDHPTRVVFAPDC--------- 144 (420)
T ss_pred hhccCCceeeeEEcC-------CCceeEEEeCCceEEEEecchhhhh-hhhHhhccccCCCceEEEECCCc---------
Confidence 346888899999953 578888888877 899999763211 1000010 122344455432
Q ss_pred cccCcEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCe---EEE------EEeCCC----
Q 003907 127 RKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHC---YEH------VLRFRS---- 193 (787)
Q Consensus 127 ~~srpLLavV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~---~v~------tL~f~s---- 193 (787)
+ .++ |.+- ..+++++|-+...+ .-+ .+.|+.
T Consensus 145 --~-s~v--v~~~-------------------------------~g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v 188 (420)
T KOG2096|consen 145 --K-SVV--VSVK-------------------------------RGNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQV 188 (420)
T ss_pred --c-eEE--EEEc-------------------------------cCCEEEEEEeeecccCCCCcccccccccccchhccc
Confidence 1 122 1210 11467777654322 211 222332
Q ss_pred cEEEE--EecCCeEEEEe-CCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEcc--ceEEEecCCceecC
Q 003907 194 SVCMV--RCSPRIVAVGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP--RWLAYASNTLLLSN 268 (787)
Q Consensus 194 ~V~sV--~~s~~~LaV~~-~~~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~~~~~lAlsp--r~LAyas~~~~l~~ 268 (787)
.|.+| +=+.++|+.+. +..|.|||+. |+++.++.+.... ..-.|++| |+||.++-.+-+
T Consensus 189 ~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~-------------n~~aavSP~GRFia~~gFTpDV-- 252 (420)
T KOG2096|consen 189 DIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSS-------------NYDAAVSPDGRFIAVSGFTPDV-- 252 (420)
T ss_pred ceEEEeecCCceEEEEecCCCcEEEEecC-Cceeeeecccccc-------------ccceeeCCCCcEEEEecCCCCc--
Confidence 34444 44557787754 6679999998 9999999886542 23578898 999988753200
Q ss_pred cceeccccCCCCCcCCCcCCCCCceeEeeehhhhhhhhcccceeecccccccCCCCCCCCcccCCccccccccccccCCC
Q 003907 269 SGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNA 348 (787)
Q Consensus 269 ~g~~s~q~lt~~~~s~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~d 348 (787)
..|... -..|
T Consensus 253 ---kVwE~~-------------------------------------------------------------------f~kd 262 (420)
T KOG2096|consen 253 ---KVWEPI-------------------------------------------------------------------FTKD 262 (420)
T ss_pred ---eEEEEE-------------------------------------------------------------------eccC
Confidence 001100 0123
Q ss_pred ceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccC--------C------CCCC---
Q 003907 349 GIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRS--------G------SGNH--- 411 (787)
Q Consensus 349 G~V~IwDl~s~~~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~--------~------~g~~--- 411 (787)
|+++ .-..+.+|++|.+.|.++|||++.+.++|+|.||+ +||||+.-.+... + .|..
T Consensus 263 G~fq-----ev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~-wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~R 336 (420)
T KOG2096|consen 263 GTFQ-----EVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGK-WRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVR 336 (420)
T ss_pred cchh-----hhhhhheeccchhheeeeeeCCCcceeEEEecCCc-EEEeeccceEecCCCchHhhcCCcchhhcCCCceE
Confidence 3321 12345678999999999999999999999999887 9999975321000 0 0000
Q ss_pred -----ccc----cCCcceEEEEEeccc--------ccccEEEEEEccCCCEEEEEeCCCeEEEEe
Q 003907 412 -----KYD----WNSSHVHLYKLHRGI--------TSATIQDICFSHYSQWIAIVSSKGTCHVFV 459 (787)
Q Consensus 412 -----~~~----~~~s~~~l~~l~rG~--------~~a~I~slaFSpDg~~LAs~S~dgTVhIwd 459 (787)
+-+ ...+..+++.-++|. +...|.+|+|++||+++|+++++ -++|+.
T Consensus 337 L~lsP~g~~lA~s~gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~g~~~atcGdr-~vrv~~ 400 (420)
T KOG2096|consen 337 LELSPSGDSLAVSFGSDLKVFASEDGKDYPELEDIHSTTISSISYSSDGKYIATCGDR-YVRVIR 400 (420)
T ss_pred EEeCCCCcEEEeecCCceEEEEcccCccchhHHHhhcCceeeEEecCCCcEEeeecce-eeeeec
Confidence 000 001113344333432 23359999999999999999765 567764
No 87
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.50 E-value=4e-12 Score=130.88 Aligned_cols=229 Identities=14% Similarity=0.192 Sum_probs=161.5
Q ss_pred eccCCCCCCCeEEEEEecCcEEEEEccCCCceeEeeeeccCcEEEEEEecCCCCCCCCCCccccCcEEEEEEcCCCCCCC
Q 003907 66 RLEYGPSVFKQVLLLGYQNGFQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLA 145 (787)
Q Consensus 66 ~l~~~~~~~~~vL~lG~~~G~qVWdv~~~~~~~ells~~dg~V~~v~~lP~P~~~~~~d~F~~srpLLavV~~d~~~~~~ 145 (787)
|+.+.+.....+.....+..+++||.-. +++...+....+.+. +.+.|.. . .++++.-
T Consensus 69 ql~w~~~~~d~~atas~dk~ir~wd~r~-~k~~~~i~~~~eni~-i~wsp~g-----------~--~~~~~~k------- 126 (313)
T KOG1407|consen 69 QLCWDPKHPDLFATASGDKTIRIWDIRS-GKCTARIETKGENIN-ITWSPDG-----------E--YIAVGNK------- 126 (313)
T ss_pred hheeCCCCCcceEEecCCceEEEEEecc-CcEEEEeeccCcceE-EEEcCCC-----------C--EEEEecC-------
Confidence 3333333333444444445799999954 555555555444444 4566642 2 5554221
Q ss_pred CCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCCcEEEEEecC--CeE-EEEeCCeEEEEECCCCc
Q 003907 146 PGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRSSVCMVRCSP--RIV-AVGLATQIYCFDALTLE 222 (787)
Q Consensus 146 ~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~v~tL~f~s~V~sV~~s~--~~L-aV~~~~~I~iwD~~T~e 222 (787)
+..|.+.|.++.+.+++.+|.-.+..+.++- +++ +...-+.|.|..-..+|
T Consensus 127 --------------------------dD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLk 180 (313)
T KOG1407|consen 127 --------------------------DDRITFIDARTYKIVNEEQFKFEVNEISWNNSNDLFFLTNGLGCVEILSYPSLK 180 (313)
T ss_pred --------------------------cccEEEEEecccceeehhcccceeeeeeecCCCCEEEEecCCceEEEEeccccc
Confidence 2479999999999999999998888888764 333 33333688888888899
Q ss_pred eeEEEEecCCcccCCCCccccccccceeEEcc--ceEEEecCCceecCcceeccccCCCCCcCCCcCCCCCceeEeeehh
Q 003907 223 NKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP--RWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAME 300 (787)
Q Consensus 223 ~l~tl~t~p~p~~~~~~~~~~~~~~~~lAlsp--r~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~sp~~g~lva~~a~d 300 (787)
.+++|..||.- --.++++| ||+|.++
T Consensus 181 pv~si~AH~sn-------------CicI~f~p~GryfA~Gs--------------------------------------- 208 (313)
T KOG1407|consen 181 PVQSIKAHPSN-------------CICIEFDPDGRYFATGS--------------------------------------- 208 (313)
T ss_pred cccccccCCcc-------------eEEEEECCCCceEeecc---------------------------------------
Confidence 99999888752 12456666 6666654
Q ss_pred hhhhhhcccceeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCC
Q 003907 301 HSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPS 380 (787)
Q Consensus 301 ~sk~la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~v~~~~aH~~pIsaLaFSpd 380 (787)
.|-.|-+||+...-+++.|..|+-||..|+||.|
T Consensus 209 ----------------------------------------------ADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~d 242 (313)
T KOG1407|consen 209 ----------------------------------------------ADALVSLWDVDELICERCISRLDWPVRTLSFSHD 242 (313)
T ss_pred ----------------------------------------------ccceeeccChhHhhhheeeccccCceEEEEeccC
Confidence 3446779999999999999999999999999999
Q ss_pred CCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCC--------
Q 003907 381 GTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSK-------- 452 (787)
Q Consensus 381 G~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~LAs~S~d-------- 452 (787)
|+|||+||+ ++.|-|=++.+ | .++++.. +.+.-..++|.|....||-+.+|
T Consensus 243 g~~lASaSE-Dh~IDIA~vet-------G----------d~~~eI~---~~~~t~tVAWHPk~~LLAyA~ddk~~d~~re 301 (313)
T KOG1407|consen 243 GRMLASASE-DHFIDIAEVET-------G----------DRVWEIP---CEGPTFTVAWHPKRPLLAYACDDKDGDSNRE 301 (313)
T ss_pred cceeeccCc-cceEEeEeccc-------C----------CeEEEee---ccCCceeEEecCCCceeeEEecCCCCccccc
Confidence 999999999 77787777654 4 4677764 34567889999999999988766
Q ss_pred -CeEEEEeCC
Q 003907 453 -GTCHVFVLS 461 (787)
Q Consensus 453 -gTVhIwdl~ 461 (787)
|+++||-+.
T Consensus 302 ag~vKiFG~~ 311 (313)
T KOG1407|consen 302 AGTVKIFGLS 311 (313)
T ss_pred cceeEEecCC
Confidence 466666543
No 88
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.50 E-value=1.6e-12 Score=150.67 Aligned_cols=197 Identities=17% Similarity=0.156 Sum_probs=126.4
Q ss_pred CCCCCcccCCcCCC-CCCCCCCCCEEEEEECCCCeEEEEEeCCCcEEEEEecC---CeEEE-EeCCeEEEEECCCCceeE
Q 003907 151 SHLGGVRDGMMDSQ-SGNCVNSPTAVRFYSFQSHCYEHVLRFRSSVCMVRCSP---RIVAV-GLATQIYCFDALTLENKF 225 (787)
Q Consensus 151 ~~~~~~r~g~~~~~-~~~~~~~p~tVrlWdlktg~~v~tL~f~s~V~sV~~s~---~~LaV-~~~~~I~iwD~~T~e~l~ 225 (787)
+|.+.|=|-+|... --=....++|||||++...++++++.++.-|.+|+|+| ++++. ++|.+|+||++..-+...
T Consensus 367 GHt~DILDlSWSKn~fLLSSSMDKTVRLWh~~~~~CL~~F~HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~ 446 (712)
T KOG0283|consen 367 GHTADILDLSWSKNNFLLSSSMDKTVRLWHPGRKECLKVFSHNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVD 446 (712)
T ss_pred ccchhheecccccCCeeEeccccccEEeecCCCcceeeEEecCCeeEEEEecccCCCcEeecccccceEEeecCcCeeEe
Confidence 35555556666421 00012467999999999999999999999999999999 56665 678999999987654211
Q ss_pred EEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCcceeccccCCCCCcCCCcCCCCCceeEeeehhhhhhh
Q 003907 226 SVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQF 305 (787)
Q Consensus 226 tl~t~p~p~~~~~~~~~~~~~~~~lAlspr~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~sp~~g~lva~~a~d~sk~l 305 (787)
.+...+. ...+ +|.. + |.
T Consensus 447 ---W~Dl~~l-----------ITAv-------cy~P---------------------------d-Gk------------- 464 (712)
T KOG0283|consen 447 ---WNDLRDL-----------ITAV-------CYSP---------------------------D-GK------------- 464 (712)
T ss_pred ---ehhhhhh-----------heeE-------Eecc---------------------------C-Cc-------------
Confidence 1111100 0011 1211 1 00
Q ss_pred hcccceeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECCCCcEEEEecc--C------CCCeEEEEE
Q 003907 306 AAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKA--H------TSPISALCF 377 (787)
Q Consensus 306 a~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~v~~~~a--H------~~pIsaLaF 377 (787)
....|..+|.+++|+....+.+..+.- | ...|+.+.|
T Consensus 465 -----------------------------------~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~ 509 (712)
T KOG0283|consen 465 -----------------------------------GAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQF 509 (712)
T ss_pred -----------------------------------eEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccCceeeeeEe
Confidence 011245678888888887776655431 1 127999999
Q ss_pred CCCCC--EEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccc-cEEEEEEccCCCEEEEEeCCCe
Q 003907 378 DPSGT--LLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSA-TIQDICFSHYSQWIAIVSSKGT 454 (787)
Q Consensus 378 SpdG~--lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a-~I~slaFSpDg~~LAs~S~dgT 454 (787)
.|... +|+| |.|- .|||||.... ..+.+|+ |..+. .-...+|+.||++|+++|+|.-
T Consensus 510 ~p~~~~~vLVT-SnDS-rIRI~d~~~~-----------------~lv~KfK-G~~n~~SQ~~Asfs~Dgk~IVs~seDs~ 569 (712)
T KOG0283|consen 510 FPGDPDEVLVT-SNDS-RIRIYDGRDK-----------------DLVHKFK-GFRNTSSQISASFSSDGKHIVSASEDSW 569 (712)
T ss_pred cCCCCCeEEEe-cCCC-ceEEEeccch-----------------hhhhhhc-ccccCCcceeeeEccCCCEEEEeecCce
Confidence 87433 6665 4534 5999998431 1333332 33332 2345889999999999999999
Q ss_pred EEEEeCCCCC
Q 003907 455 CHVFVLSPFG 464 (787)
Q Consensus 455 VhIwdl~~~g 464 (787)
|+||++....
T Consensus 570 VYiW~~~~~~ 579 (712)
T KOG0283|consen 570 VYIWKNDSFN 579 (712)
T ss_pred EEEEeCCCCc
Confidence 9999986543
No 89
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.50 E-value=4.9e-12 Score=147.40 Aligned_cols=239 Identities=15% Similarity=0.181 Sum_probs=165.6
Q ss_pred CCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCceeEeeeeccCcEEEEEEecCCCCCCCCCCccccCc
Q 003907 53 EDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHP 131 (787)
Q Consensus 53 ~~~~~~v~wa~Fd~l~~~~~~~~~vL~lG~~~G-~qVWdv~~~~~~~ells~~dg~V~~v~~lP~P~~~~~~d~F~~srp 131 (787)
..|++..+-+.||. + +..|.++..+| +++|+.....+.-+++..+...|.+++.- ..
T Consensus 10 yaht~G~t~i~~d~----~---gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~-------------s~-- 67 (933)
T KOG1274|consen 10 YAHTGGLTLICYDP----D---GEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACY-------------SN-- 67 (933)
T ss_pred hhccCceEEEEEcC----C---CCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeec-------------cc--
Confidence 45777777777874 2 44666666666 99999966435556666666677777643 12
Q ss_pred EEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEE---EEEeCCCcEEEEEecCCeEEEE
Q 003907 132 FLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYE---HVLRFRSSVCMVRCSPRIVAVG 208 (787)
Q Consensus 132 LLavV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~v---~tL~f~s~V~sV~~s~~~LaV~ 208 (787)
.+++ +. ..++|.+|.+-+++.- ..+.++-.++.+.-+++.+|.|
T Consensus 68 ~f~~-~s--------------------------------~~~tv~~y~fps~~~~~iL~Rftlp~r~~~v~g~g~~iaag 114 (933)
T KOG1274|consen 68 HFLT-GS--------------------------------EQNTVLRYKFPSGEEDTILARFTLPIRDLAVSGSGKMIAAG 114 (933)
T ss_pred ceEE-ee--------------------------------ccceEEEeeCCCCCccceeeeeeccceEEEEecCCcEEEee
Confidence 3333 21 1368999999887654 3334444444554555788888
Q ss_pred eCC-eEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEcc--ceEEEecCCceecCcceeccccCCCCCcCCC
Q 003907 209 LAT-QIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP--RWLAYASNTLLLSNSGRLSPQNLTPSGVSPS 285 (787)
Q Consensus 209 ~~~-~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~~~~~lAlsp--r~LAyas~~~~l~~~g~~s~q~lt~~~~s~s 285 (787)
.++ .|+|-+..+......+.+|..| .-.+.+.| .+||.
T Consensus 115 sdD~~vK~~~~~D~s~~~~lrgh~ap-------------Vl~l~~~p~~~fLAv-------------------------- 155 (933)
T KOG1274|consen 115 SDDTAVKLLNLDDSSQEKVLRGHDAP-------------VLQLSYDPKGNFLAV-------------------------- 155 (933)
T ss_pred cCceeEEEEeccccchheeecccCCc-------------eeeeeEcCCCCEEEE--------------------------
Confidence 766 5999999988888888877665 11233333 22222
Q ss_pred cCCCCCceeEeeehhhhhhhhcccceeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECCCCcEEEEe
Q 003907 286 TSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQF 365 (787)
Q Consensus 286 ~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~v~~~ 365 (787)
.+.||.|+|||+.++.+..++
T Consensus 156 -----------------------------------------------------------ss~dG~v~iw~~~~~~~~~tl 176 (933)
T KOG1274|consen 156 -----------------------------------------------------------SSCDGKVQIWDLQDGILSKTL 176 (933)
T ss_pred -----------------------------------------------------------EecCceEEEEEcccchhhhhc
Confidence 245889999999988776665
Q ss_pred cc-------C-CCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEE
Q 003907 366 KA-------H-TSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDI 437 (787)
Q Consensus 366 ~a-------H-~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~sl 437 (787)
.+ - ...+..++|+|+|..||....|+ .|++|+... ..++++|+.......+.++
T Consensus 177 ~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~-~Vkvy~r~~-----------------we~~f~Lr~~~~ss~~~~~ 238 (933)
T KOG1274|consen 177 TGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDN-TVKVYSRKG-----------------WELQFKLRDKLSSSKFSDL 238 (933)
T ss_pred ccCCccccccccceeeeeeecCCCCeEEeeccCC-eEEEEccCC-----------------ceeheeecccccccceEEE
Confidence 43 1 44677899999966666666745 499999742 1577888755544569999
Q ss_pred EEccCCCEEEEEeCCCeEEEEeCCC
Q 003907 438 CFSHYSQWIAIVSSKGTCHVFVLSP 462 (787)
Q Consensus 438 aFSpDg~~LAs~S~dgTVhIwdl~~ 462 (787)
+|||.|+|||+++.||-|-|||+++
T Consensus 239 ~wsPnG~YiAAs~~~g~I~vWnv~t 263 (933)
T KOG1274|consen 239 QWSPNGKYIAASTLDGQILVWNVDT 263 (933)
T ss_pred EEcCCCcEEeeeccCCcEEEEeccc
Confidence 9999999999999999999999984
No 90
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.48 E-value=1.9e-12 Score=132.74 Aligned_cols=249 Identities=13% Similarity=0.108 Sum_probs=164.4
Q ss_pred CCCCCCcEEEEEEeecc------CCCCCCCeEEEEEecCcEEEEEccCCCceeEeeeeccCcEEEEEEecCCCCCCCCCC
Q 003907 52 SEDLKDQVTWAGFDRLE------YGPSVFKQVLLLGYQNGFQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEG 125 (787)
Q Consensus 52 ~~~~~~~v~wa~Fd~l~------~~~~~~~~vL~lG~~~G~qVWdv~~~~~~~ells~~dg~V~~v~~lP~P~~~~~~d~ 125 (787)
..+.+.-.....||.-+ ..++...++++...++.+|+||+....+-...+..|...|..+-+.+.
T Consensus 45 ~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~--------- 115 (311)
T KOG0277|consen 45 VTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTV--------- 115 (311)
T ss_pred cCCCCCeEEEEeeecccceeEeeecCCCcceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEeccccc---------
Confidence 33566666777777411 122223445555545559999987666656667778888888877642
Q ss_pred ccccCcEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCC-CcEEEEEecC--
Q 003907 126 FRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFR-SSVCMVRCSP-- 202 (787)
Q Consensus 126 F~~srpLLavV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~v~tL~f~-s~V~sV~~s~-- 202 (787)
.|..+++ + +|| ++|+|||...++-++|++.+ +.|+...++|
T Consensus 116 ---~r~~~lt-s----------------------SWD----------~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~ 159 (311)
T KOG0277|consen 116 ---RRRIFLT-S----------------------SWD----------GTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHI 159 (311)
T ss_pred ---cceeEEe-e----------------------ccC----------CceEeecCCCCcceEeecCCccEEEEEecCCCC
Confidence 1222222 2 343 69999999999999998765 5899999998
Q ss_pred -CeEEEE-eCCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCcceeccccCCCC
Q 003907 203 -RIVAVG-LATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPS 280 (787)
Q Consensus 203 -~~LaV~-~~~~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~~~~~lAlspr~LAyas~~~~l~~~g~~s~q~lt~~ 280 (787)
++++.+ .+...++||++..-....|..|... +++..
T Consensus 160 ~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~E-----------------il~cd------------------------- 197 (311)
T KOG0277|consen 160 PNLFASASGDGTLRLWDVRSPGKFMSIEAHNSE-----------------ILCCD------------------------- 197 (311)
T ss_pred CCeEEEccCCceEEEEEecCCCceeEEEeccce-----------------eEeec-------------------------
Confidence 677764 4667999997643322334333210 01000
Q ss_pred CcCCCcCCCCCceeEeeehhhhhhhhcccceeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECCCC-
Q 003907 281 GVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTR- 359 (787)
Q Consensus 281 ~~s~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~- 359 (787)
+++| +...+++++.|+.|++||+++.
T Consensus 198 --------------------------------w~ky---------------------~~~vl~Tg~vd~~vr~wDir~~r 224 (311)
T KOG0277|consen 198 --------------------------------WSKY---------------------NHNVLATGGVDNLVRGWDIRNLR 224 (311)
T ss_pred --------------------------------cccc---------------------CCcEEEecCCCceEEEEehhhcc
Confidence 1111 1112345678999999999985
Q ss_pred cEEEEeccCCCCeEEEEECCC-CCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEE
Q 003907 360 AIISQFKAHTSPISALCFDPS-GTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDIC 438 (787)
Q Consensus 360 ~~v~~~~aH~~pIsaLaFSpd-G~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~sla 438 (787)
.++..|.+|.-.|..++|||. ..+|||||-| -++||||.+..- + ....++. |..-+..+.
T Consensus 225 ~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYD-mT~riw~~~~~d-----s---------~~e~~~~----HtEFv~g~D 285 (311)
T KOG0277|consen 225 TPLFELNGHGLAVRKVKFSPHHASLLASASYD-MTVRIWDPERQD-----S---------AIETVDH----HTEFVCGLD 285 (311)
T ss_pred ccceeecCCceEEEEEecCcchhhHhhhcccc-ceEEecccccch-----h---------hhhhhhc----cceEEeccc
Confidence 478889999999999999995 6689999994 559999985310 0 0111221 222367788
Q ss_pred Ecc-CCCEEEEEeCCCeEEEEe
Q 003907 439 FSH-YSQWIAIVSSKGTCHVFV 459 (787)
Q Consensus 439 FSp-Dg~~LAs~S~dgTVhIwd 459 (787)
||+ +..++|+++=|+++.||+
T Consensus 286 ws~~~~~~vAs~gWDe~l~Vw~ 307 (311)
T KOG0277|consen 286 WSLFDPGQVASTGWDELLYVWN 307 (311)
T ss_pred cccccCceeeecccccceeeec
Confidence 886 678999999999999997
No 91
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.47 E-value=3.7e-12 Score=144.09 Aligned_cols=238 Identities=16% Similarity=0.167 Sum_probs=179.1
Q ss_pred CCeEEEEEecCcEEEEEccCCCceeEeeeeccCcEEEEEEecCCCCCCCCCCccccCcEEEEEEcCCCCCCCCCCCcCCC
Q 003907 74 FKQVLLLGYQNGFQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHL 153 (787)
Q Consensus 74 ~~~vL~lG~~~G~qVWdv~~~~~~~ells~~dg~V~~v~~lP~P~~~~~~d~F~~srpLLavV~~d~~~~~~~~~~~~~~ 153 (787)
..++|++|....+-+|+-. .+.+.++.+.+...|..+.+.|+ +. .||+-.
T Consensus 187 s~n~laValg~~vylW~~~-s~~v~~l~~~~~~~vtSv~ws~~-----------G~--~LavG~---------------- 236 (484)
T KOG0305|consen 187 SANVLAVALGQSVYLWSAS-SGSVTELCSFGEELVTSVKWSPD-----------GS--HLAVGT---------------- 236 (484)
T ss_pred cCCeEEEEecceEEEEecC-CCceEEeEecCCCceEEEEECCC-----------CC--EEEEee----------------
Confidence 3679999999999999985 57788888887889999999864 22 677622
Q ss_pred CCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeC--CCcEEEEEecCCeEEEEe-CCeEEEEECCCCceeEE-EEe
Q 003907 154 GGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRF--RSSVCMVRCSPRIVAVGL-ATQIYCFDALTLENKFS-VLT 229 (787)
Q Consensus 154 ~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~v~tL~f--~s~V~sV~~s~~~LaV~~-~~~I~iwD~~T~e~l~t-l~t 229 (787)
..++|.|||.++.+.+.++.. ...|-+++++...|..|. +..|..+|++..+.... +..
T Consensus 237 -----------------~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~~~~lssGsr~~~I~~~dvR~~~~~~~~~~~ 299 (484)
T KOG0305|consen 237 -----------------SDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWNSSVLSSGSRDGKILNHDVRISQHVVSTLQG 299 (484)
T ss_pred -----------------cCCeEEEEehhhccccccccCCcCceeEEEeccCceEEEecCCCcEEEEEEecchhhhhhhhc
Confidence 126899999999999999987 468999999998888876 45799999887764333 222
Q ss_pred cCCcccCCCCccccccccceeEEccceEEEecCCceecCcceeccccCCCCCcCCCcCCCCCceeEeeehhhhhhhhccc
Q 003907 230 YPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGL 309 (787)
Q Consensus 230 ~p~p~~~~~~~~~~~~~~~~lAlspr~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~sp~~g~lva~~a~d~sk~la~G~ 309 (787)
|..- .+.+ +...
T Consensus 300 H~qe---------------VCgL-----kws~------------------------------------------------ 311 (484)
T KOG0305|consen 300 HRQE---------------VCGL-----KWSP------------------------------------------------ 311 (484)
T ss_pred ccce---------------eeee-----EECC------------------------------------------------
Confidence 2210 1111 1111
Q ss_pred ceeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECC-CCCEEEEEE
Q 003907 310 SKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDP-SGTLLVTAS 388 (787)
Q Consensus 310 ~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~v~~~~aH~~pIsaLaFSp-dG~lLATaS 388 (787)
.+..++++..|..+.|||.....++..+..|+..|.+|+|+| ...+||||+
T Consensus 312 ----------------------------d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGG 363 (484)
T KOG0305|consen 312 ----------------------------DGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGG 363 (484)
T ss_pred ----------------------------CCCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcC
Confidence 111234567889999999988899999999999999999999 677999974
Q ss_pred -cCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEe--CCCeEEEEeCCCCCC
Q 003907 389 -VYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVS--SKGTCHVFVLSPFGG 465 (787)
Q Consensus 389 -~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~LAs~S--~dgTVhIwdl~~~gg 465 (787)
..|..|++||+.. | .++.... +...|.+|.||+..+-|+++- .++-|.||+......
T Consensus 364 Gs~D~~i~fwn~~~-------g----------~~i~~vd---tgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~ 423 (484)
T KOG0305|consen 364 GSADRCIKFWNTNT-------G----------ARIDSVD---TGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKL 423 (484)
T ss_pred CCcccEEEEEEcCC-------C----------cEecccc---cCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccce
Confidence 3356799999854 3 3454443 345799999999997777664 456799999999888
Q ss_pred ccccccccC
Q 003907 466 DSGFQTLSS 474 (787)
Q Consensus 466 ~~~~~~H~~ 474 (787)
...+.+|+.
T Consensus 424 ~~~l~gH~~ 432 (484)
T KOG0305|consen 424 VAELLGHTS 432 (484)
T ss_pred eeeecCCcc
Confidence 888888964
No 92
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.47 E-value=2.5e-11 Score=127.45 Aligned_cols=108 Identities=14% Similarity=0.259 Sum_probs=76.2
Q ss_pred CceEEEEECCCC----cEEEEeccCCCCeEEEEECCC-C---CEEEEEEcCCCEEEEEeCCCCcc-----cCCCCCCccc
Q 003907 348 AGIVVVKDFVTR----AIISQFKAHTSPISALCFDPS-G---TLLVTASVYGNNINIFRIMPSCM-----RSGSGNHKYD 414 (787)
Q Consensus 348 dG~V~IwDl~s~----~~v~~~~aH~~pIsaLaFSpd-G---~lLATaS~dG~~IrVWdi~~~~~-----~~~~g~~~~~ 414 (787)
-+.++||....+ ..++++..|+.||..|+|.|+ | .+||+|+.|| |+||.+...+. ....+. ..
T Consensus 198 ~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg--v~I~~v~~~~s~i~~ee~~~~~--~~ 273 (361)
T KOG2445|consen 198 LNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG--VRIFKVKVARSAIEEEEVLAPD--LM 273 (361)
T ss_pred ccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecCc--EEEEEEeeccchhhhhcccCCC--Cc
Confidence 456788876543 256788899999999999996 3 3799999977 99999974210 000000 00
Q ss_pred cCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEeCC
Q 003907 415 WNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLS 461 (787)
Q Consensus 415 ~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~ 461 (787)
.+-..+.+.++ +.|++.|+.+.|.-.|..|+++++||+|++|..+
T Consensus 274 ~~l~v~~vs~~--~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkan 318 (361)
T KOG2445|consen 274 TDLPVEKVSEL--DDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKAN 318 (361)
T ss_pred cccceEEeeec--cCCCCceEEEEEeeeeeEEeecCCCceeeehhhh
Confidence 01111223233 3467789999999999999999999999999864
No 93
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.47 E-value=1.8e-12 Score=143.10 Aligned_cols=109 Identities=19% Similarity=0.177 Sum_probs=78.9
Q ss_pred cccCCCceEEEEECCCCcE---EEEeccCCC--CeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCC
Q 003907 343 ADMDNAGIVVVKDFVTRAI---ISQFKAHTS--PISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNS 417 (787)
Q Consensus 343 ~s~~~dG~V~IwDl~s~~~---v~~~~aH~~--pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~ 417 (787)
+.+..||.|++||..+... ...=.||.. .|+||+||+||++|+|-+.|++ ++|||++..
T Consensus 333 Aagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~t-LKvWDLrq~--------------- 396 (641)
T KOG0772|consen 333 AAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDT-LKVWDLRQF--------------- 396 (641)
T ss_pred hhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCc-eeeeecccc---------------
Confidence 3456799999999865432 222358987 9999999999999999999776 999999542
Q ss_pred cceEEEEEecccccccEEEEEEccCCCEEEEEeC------CCeEEEEeCCCCCCccc
Q 003907 418 SHVHLYKLHRGITSATIQDICFSHYSQWIAIVSS------KGTCHVFVLSPFGGDSG 468 (787)
Q Consensus 418 s~~~l~~l~rG~~~a~I~slaFSpDg~~LAs~S~------dgTVhIwdl~~~gg~~~ 468 (787)
..+|.....-.+...-++++||||.+.|++|+. .|++.+||-.++.....
T Consensus 397 -kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~k 452 (641)
T KOG0772|consen 397 -KKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYK 452 (641)
T ss_pred -ccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEE
Confidence 134443322112224578999999999999864 36788888777655433
No 94
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.46 E-value=5e-11 Score=120.42 Aligned_cols=257 Identities=14% Similarity=0.122 Sum_probs=171.8
Q ss_pred CCCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccC--CCc--eeEeeeeccCcEEEEEEecCCCCCCCCCCc
Q 003907 52 SEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVED--ASN--FNELVSKRDGPVSFLQMQPFPVKDDGCEGF 126 (787)
Q Consensus 52 ~~~~~~~v~wa~Fd~l~~~~~~~~~vL~lG~~~G-~qVWdv~~--~~~--~~ells~~dg~V~~v~~lP~P~~~~~~d~F 126 (787)
+--||..|+.+.|.. .+++|++|..+. +++.-.+. ... -.--++-|||.|+.+.|+-+|..
T Consensus 85 ~khhkgsiyc~~ws~-------~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s------- 150 (350)
T KOG0641|consen 85 NKHHKGSIYCTAWSP-------CGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPES------- 150 (350)
T ss_pred ccccCccEEEEEecC-------ccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCc-------
Confidence 444778888888864 477999999874 77765532 111 11236789999999999977642
Q ss_pred cccCcEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCC-CcEEEE-EecCCe
Q 003907 127 RKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFR-SSVCMV-RCSPRI 204 (787)
Q Consensus 127 ~~srpLLavV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~v~tL~f~-s~V~sV-~~s~~~ 204 (787)
..-+|+. ++ . -+++|.+=|-.+|+..+.+..+ +.|+++ .+|.-+
T Consensus 151 --~~~il~s--~g----a--------------------------gdc~iy~tdc~~g~~~~a~sghtghilalyswn~~m 196 (350)
T KOG0641|consen 151 --GGAILAS--AG----A--------------------------GDCKIYITDCGRGQGFHALSGHTGHILALYSWNGAM 196 (350)
T ss_pred --CceEEEe--cC----C--------------------------CcceEEEeecCCCCcceeecCCcccEEEEEEecCcE
Confidence 2225543 21 0 1368888899999999999866 578776 567778
Q ss_pred EEEEe-CCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCcceeccccCCCCCcC
Q 003907 205 VAVGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVS 283 (787)
Q Consensus 205 LaV~~-~~~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~~~~~lAlspr~LAyas~~~~l~~~g~~s~q~lt~~~~s 283 (787)
++.+. +.+|++||++-..+..++.+.-. + . |...-|
T Consensus 197 ~~sgsqdktirfwdlrv~~~v~~l~~~~~------~---~--glessa-------------------------------- 233 (350)
T KOG0641|consen 197 FASGSQDKTIRFWDLRVNSCVNTLDNDFH------D---G--GLESSA-------------------------------- 233 (350)
T ss_pred EEccCCCceEEEEeeeccceeeeccCccc------C---C--Ccccce--------------------------------
Confidence 88765 55799999875555444432100 0 0 000001
Q ss_pred CCcCCCCCceeEeeehhhhhhhhcccceeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECCCCcEEE
Q 003907 284 PSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIIS 363 (787)
Q Consensus 284 ~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~v~ 363 (787)
|+.++.| |.++ .++++..|....+||++.++.+.
T Consensus 234 ----------vaav~vd--------------------------------psgr----ll~sg~~dssc~lydirg~r~iq 267 (350)
T KOG0641|consen 234 ----------VAAVAVD--------------------------------PSGR----LLASGHADSSCMLYDIRGGRMIQ 267 (350)
T ss_pred ----------eEEEEEC--------------------------------CCcc----eeeeccCCCceEEEEeeCCceee
Confidence 1111111 0011 11244567788999999999999
Q ss_pred EeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCC
Q 003907 364 QFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYS 443 (787)
Q Consensus 364 ~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg 443 (787)
.|..|+..|.|+.|||...+|+|+|- +..|++=|+. |. +. +.+-..--+.+...+..+.|.|..
T Consensus 268 ~f~phsadir~vrfsp~a~yllt~sy-d~~ikltdlq--------gd----la---~el~~~vv~ehkdk~i~~rwh~~d 331 (350)
T KOG0641|consen 268 RFHPHSADIRCVRFSPGAHYLLTCSY-DMKIKLTDLQ--------GD----LA---HELPIMVVAEHKDKAIQCRWHPQD 331 (350)
T ss_pred eeCCCccceeEEEeCCCceEEEEecc-cceEEEeecc--------cc----hh---hcCceEEEEeccCceEEEEecCcc
Confidence 99999999999999999999999999 4569999984 21 00 112112223344556669999999
Q ss_pred CEEEEEeCCCeEEEEeCC
Q 003907 444 QWIAIVSSKGTCHVFVLS 461 (787)
Q Consensus 444 ~~LAs~S~dgTVhIwdl~ 461 (787)
--+.++|.|.|+.+|.++
T Consensus 332 ~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 332 FSFISSSADKTATLWALN 349 (350)
T ss_pred ceeeeccCcceEEEeccC
Confidence 888999999999999876
No 95
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.44 E-value=3.8e-13 Score=145.04 Aligned_cols=212 Identities=14% Similarity=0.214 Sum_probs=145.9
Q ss_pred CCCcEEEEEecC--CeEEEEe-CCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEcc--ceEEEecCCce
Q 003907 191 FRSSVCMVRCSP--RIVAVGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP--RWLAYASNTLL 265 (787)
Q Consensus 191 f~s~V~sV~~s~--~~LaV~~-~~~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~~~~~lAlsp--r~LAyas~~~~ 265 (787)
-..+|..|++.| |+|++|. .+.+.+|+..+.--...+..|..| +..|.+++ .|+.+++....
T Consensus 95 vkc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~-------------Vr~m~ws~~g~wmiSgD~gG~ 161 (464)
T KOG0284|consen 95 VKCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSP-------------VRTMKWSHNGTWMISGDKGGM 161 (464)
T ss_pred cccceeeEEEcCCCceeEeecccccEEEecCceeeHHHHhhhhccc-------------ceeEEEccCCCEEEEcCCCce
Confidence 456899999988 6777765 467999998655333333355554 34577766 78877765432
Q ss_pred ecCcceeccccCCCCCcCCCcCCCCCceeEeeehhhhhhhhcccceeecccccccCCCCCCCCcccCCcccccccccccc
Q 003907 266 LSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADM 345 (787)
Q Consensus 266 l~~~g~~s~q~lt~~~~s~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~ 345 (787)
+ .-||.--.. +.+...+.+ .. ...+++++ +..-+.++
T Consensus 162 i-----KyWqpnmnn-----------Vk~~~ahh~-------ea----------------IRdlafSp----nDskF~t~ 198 (464)
T KOG0284|consen 162 I-----KYWQPNMNN-----------VKIIQAHHA-------EA----------------IRDLAFSP----NDSKFLTC 198 (464)
T ss_pred E-----Eecccchhh-----------hHHhhHhhh-------hh----------------hheeccCC----CCceeEEe
Confidence 1 123321100 000000000 00 00111111 11124567
Q ss_pred CCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEE
Q 003907 346 DNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKL 425 (787)
Q Consensus 346 ~~dG~V~IwDl~s~~~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l 425 (787)
+.||+|+|||+...+.-..|.+|.-.|.+++|+|.-.++|++|. ++.|++||.+. | .++..+
T Consensus 199 SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgsk-DnlVKlWDprS-------g----------~cl~tl 260 (464)
T KOG0284|consen 199 SDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSK-DNLVKLWDPRS-------G----------SCLATL 260 (464)
T ss_pred cCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccC-CceeEeecCCC-------c----------chhhhh
Confidence 88999999999999888899999999999999999999999999 45899999864 3 466666
Q ss_pred ecccccccEEEEEEccCCCEEEEEeCCCeEEEEeCCCCCCccccccccCCCCC
Q 003907 426 HRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQTLSSQGGD 478 (787)
Q Consensus 426 ~rG~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~~~gg~~~~~~H~~~~~~ 478 (787)
. + +...|..+.|+++++||+++|.|.++++||+...+....+++|...+..
T Consensus 261 h-~-HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~ 311 (464)
T KOG0284|consen 261 H-G-HKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTS 311 (464)
T ss_pred h-h-ccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchhhhee
Confidence 5 2 3346999999999999999999999999999988888888999754433
No 96
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.43 E-value=6.8e-12 Score=128.42 Aligned_cols=283 Identities=13% Similarity=0.105 Sum_probs=180.2
Q ss_pred CCCCCcEEEEEEeeccCCCCCCCeEEEEEecCcEEEEEccCCCceeEeeeeccCcEEEEEEecCCCCCCCCCCccccCcE
Q 003907 53 EDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNGFQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPF 132 (787)
Q Consensus 53 ~~~~~~v~wa~Fd~l~~~~~~~~~vL~lG~~~G~qVWdv~~~~~~~ells~~dg~V~~v~~lP~P~~~~~~d~F~~srpL 132 (787)
.+|+-.|.-..|--+ .+ ++-.|+.+..+|--+..--++|...-++.+|.|.|....+..+- +
T Consensus 11 ~ghtrpvvdl~~s~i--tp--~g~flisa~kd~~pmlr~g~tgdwigtfeghkgavw~~~l~~na--------------~ 72 (334)
T KOG0278|consen 11 HGHTRPVVDLAFSPI--TP--DGYFLISASKDGKPMLRNGDTGDWIGTFEGHKGAVWSATLNKNA--------------T 72 (334)
T ss_pred cCCCcceeEEeccCC--CC--CceEEEEeccCCCchhccCCCCCcEEeeeccCcceeeeecCchh--------------h
Confidence 456677777777642 22 47789999998854444445677888999999999987765321 2
Q ss_pred EEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCCcEEEEEecC--CeEEEE-e
Q 003907 133 LLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRSSVCMVRCSP--RIVAVG-L 209 (787)
Q Consensus 133 LavV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~v~tL~f~s~V~sV~~s~--~~LaV~-~ 209 (787)
.|. ++ ..+-+-++||.-+|..++++++..-|.+++|+. +.|+++ .
T Consensus 73 ~aa-sa-------------------------------aadftakvw~a~tgdelhsf~hkhivk~~af~~ds~~lltgg~ 120 (334)
T KOG0278|consen 73 RAA-SA-------------------------------AADFTAKVWDAVTGDELHSFEHKHIVKAVAFSQDSNYLLTGGQ 120 (334)
T ss_pred hhh-hh-------------------------------cccchhhhhhhhhhhhhhhhhhhheeeeEEecccchhhhccch
Confidence 221 10 023477899999999999999999999999987 455554 4
Q ss_pred CCeEEEEECCCCc-eeEEEEecCCcccCCCCccccccccceeEEcc--ceEEEecCCceecCcceeccccCCCCCcCCCc
Q 003907 210 ATQIYCFDALTLE-NKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP--RWLAYASNTLLLSNSGRLSPQNLTPSGVSPST 286 (787)
Q Consensus 210 ~~~I~iwD~~T~e-~l~tl~t~p~p~~~~~~~~~~~~~~~~lAlsp--r~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~ 286 (787)
+.-+++||+...+ ....+.+|+.. +. ..+-+.. ..|..+.+. ++..|+..++..+
T Consensus 121 ekllrvfdln~p~App~E~~ghtg~---------Ir---~v~wc~eD~~iLSSadd~------tVRLWD~rTgt~v---- 178 (334)
T KOG0278|consen 121 EKLLRVFDLNRPKAPPKEISGHTGG---------IR---TVLWCHEDKCILSSADDK------TVRLWDHRTGTEV---- 178 (334)
T ss_pred HHHhhhhhccCCCCCchhhcCCCCc---------ce---eEEEeccCceEEeeccCC------ceEEEEeccCcEE----
Confidence 4558899877554 12233333321 11 1222221 445555543 2233665553111
Q ss_pred CCCCCceeEeeehhhhhhhhcccceeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECCCCcEEEEec
Q 003907 287 SPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFK 366 (787)
Q Consensus 287 sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~v~~~~ 366 (787)
++|. -.....++-.+++++. .+....+.|..||..+..++..++
T Consensus 179 ------------------------~sL~-------~~s~VtSlEvs~dG~i-----lTia~gssV~Fwdaksf~~lKs~k 222 (334)
T KOG0278|consen 179 ------------------------QSLE-------FNSPVTSLEVSQDGRI-----LTIAYGSSVKFWDAKSFGLLKSYK 222 (334)
T ss_pred ------------------------EEEe-------cCCCCcceeeccCCCE-----EEEecCceeEEeccccccceeecc
Confidence 0000 0000111111222222 123456789999999988888776
Q ss_pred cCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEE
Q 003907 367 AHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWI 446 (787)
Q Consensus 367 aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~L 446 (787)
.- ..|.+.+++|+-..++.+++|+. +..||..+ | ..+-.+..|+ ...|-|+.|||||..-
T Consensus 223 ~P-~nV~SASL~P~k~~fVaGged~~-~~kfDy~T-------g----------eEi~~~nkgh-~gpVhcVrFSPdGE~y 282 (334)
T KOG0278|consen 223 MP-CNVESASLHPKKEFFVAGGEDFK-VYKFDYNT-------G----------EEIGSYNKGH-FGPVHCVRFSPDGELY 282 (334)
T ss_pred Cc-cccccccccCCCceEEecCcceE-EEEEeccC-------C----------ceeeecccCC-CCceEEEEECCCCcee
Confidence 54 46888999999999999998665 78899754 3 2332233453 4679999999999999
Q ss_pred EEEeCCCeEEEEeCCCC
Q 003907 447 AIVSSKGTCHVFVLSPF 463 (787)
Q Consensus 447 As~S~dgTVhIwdl~~~ 463 (787)
|+||.||||+||...+.
T Consensus 283 AsGSEDGTirlWQt~~~ 299 (334)
T KOG0278|consen 283 ASGSEDGTIRLWQTTPG 299 (334)
T ss_pred eccCCCceEEEEEecCC
Confidence 99999999999998764
No 97
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.42 E-value=1.7e-12 Score=148.91 Aligned_cols=113 Identities=16% Similarity=0.225 Sum_probs=84.8
Q ss_pred ccCCCceEEEEECCC-CcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEE
Q 003907 344 DMDNAGIVVVKDFVT-RAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHL 422 (787)
Q Consensus 344 s~~~dG~V~IwDl~s-~~~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l 422 (787)
++...|.+++||++. .++..+|.||.+||.|+.|+|++.+||||+.|+ .|+|||.... ....+
T Consensus 194 s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK-~vkiWd~t~~---------------~~~~~ 257 (839)
T KOG0269|consen 194 SIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDK-MVKIWDMTDS---------------RAKPK 257 (839)
T ss_pred EecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCc-cEEEEeccCC---------------Cccce
Confidence 445679999999986 456778999999999999999999999999855 5999998431 01233
Q ss_pred EEEecccccccEEEEEEccCCCE-EEEEe--CCCeEEEEeCCCCCCc-cccccccCC
Q 003907 423 YKLHRGITSATIQDICFSHYSQW-IAIVS--SKGTCHVFVLSPFGGD-SGFQTLSSQ 475 (787)
Q Consensus 423 ~~l~rG~~~a~I~slaFSpDg~~-LAs~S--~dgTVhIwdl~~~gg~-~~~~~H~~~ 475 (787)
.... +.+.|..+.|-|+-++ ||+++ .|-.|||||+...--+ ..+..|+..
T Consensus 258 ~tIn---Tiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~ 311 (839)
T KOG0269|consen 258 HTIN---TIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDS 311 (839)
T ss_pred eEEe---ecceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeeccCcc
Confidence 4443 4578999999998764 66665 3678999999744333 456677643
No 98
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.41 E-value=5.2e-12 Score=129.05 Aligned_cols=263 Identities=15% Similarity=0.199 Sum_probs=169.4
Q ss_pred CCCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCC--ceeEeeeeccCcEEEEEEecCCCCCCCCCCccc
Q 003907 52 SEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDAS--NFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRK 128 (787)
Q Consensus 52 ~~~~~~~v~wa~Fd~l~~~~~~~~~vL~lG~~~G-~qVWdv~~~~--~~~ells~~dg~V~~v~~lP~P~~~~~~d~F~~ 128 (787)
+..|+|.|.-+-.|. -++.|+++..++ ++||.+.+.+ ++...|.+|.|||.-+.+. .|. .+
T Consensus 7 dt~H~D~IHda~lDy-------ygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wa-hPk--------~G 70 (299)
T KOG1332|consen 7 DTQHEDMIHDAQLDY-------YGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWA-HPK--------FG 70 (299)
T ss_pred hhhhhhhhhHhhhhh-------hcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeec-ccc--------cC
Confidence 345777777666653 256677777766 9999998877 4666788999999999987 332 23
Q ss_pred cCcEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEe---CCCcEEEEEecCC--
Q 003907 129 LHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLR---FRSSVCMVRCSPR-- 203 (787)
Q Consensus 129 srpLLavV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~v~tL~---f~s~V~sV~~s~~-- 203 (787)
. +||.++ .+++|.||.-.+|+--+..+ +.+.|.+|++-|.
T Consensus 71 ~--iLAScs---------------------------------YDgkVIiWke~~g~w~k~~e~~~h~~SVNsV~waphey 115 (299)
T KOG1332|consen 71 T--ILASCS---------------------------------YDGKVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEY 115 (299)
T ss_pred c--EeeEee---------------------------------cCceEEEEecCCCchhhhhhhhhhcccceeeccccccc
Confidence 3 787643 34799999998885433333 3468999999882
Q ss_pred --eEEEE-eCCeEEEEECCCC-cee-EEE-EecCCcccCCCCccccccccceeEEccceEEEecCCceecCcceeccccC
Q 003907 204 --IVAVG-LATQIYCFDALTL-ENK-FSV-LTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNL 277 (787)
Q Consensus 204 --~LaV~-~~~~I~iwD~~T~-e~l-~tl-~t~p~p~~~~~~~~~~~~~~~~lAlspr~LAyas~~~~l~~~g~~s~q~l 277 (787)
+||++ .|+.|.+++..+- .-. ..| ..|+. |.+.+...| +.-+
T Consensus 116 gl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~-------------GvnsVswap-----a~~~-------------- 163 (299)
T KOG1332|consen 116 GLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEI-------------GVNSVSWAP-----ASAP-------------- 163 (299)
T ss_pred ceEEEEeeCCCcEEEEEEcCCCCccchhhhhcccc-------------ccceeeecC-----cCCC--------------
Confidence 56664 4678988876543 110 011 11221 233344322 1000
Q ss_pred CCCCcCCCcCCCCCceeEeeehhhhhhhhcccceeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECC
Q 003907 278 TPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFV 357 (787)
Q Consensus 278 t~~~~s~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~ 357 (787)
|.++.+. .++.+ .-++++..|..|+||+..
T Consensus 164 -------------g~~~~~~-------~~~~~------------------------------krlvSgGcDn~VkiW~~~ 193 (299)
T KOG1332|consen 164 -------------GSLVDQG-------PAAKV------------------------------KRLVSGGCDNLVKIWKFD 193 (299)
T ss_pred -------------ccccccC-------ccccc------------------------------ceeeccCCccceeeeecC
Confidence 1111000 00000 012456789999999998
Q ss_pred CCc--EEEEeccCCCCeEEEEECCCC----CEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEeccccc
Q 003907 358 TRA--IISQFKAHTSPISALCFDPSG----TLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITS 431 (787)
Q Consensus 358 s~~--~v~~~~aH~~pIsaLaFSpdG----~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~ 431 (787)
+++ .-.+|.+|++-|..+|+.|.- ..||+||.||+ +.||..... + ..|.. ..+.+| .
T Consensus 194 ~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~-viIwt~~~e------~---e~wk~--tll~~f-----~ 256 (299)
T KOG1332|consen 194 SDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGT-VIIWTKDEE------Y---EPWKK--TLLEEF-----P 256 (299)
T ss_pred CcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCc-EEEEEecCc------c---Ccccc--cccccC-----C
Confidence 864 334589999999999999964 47999999887 789986421 0 11211 122222 3
Q ss_pred ccEEEEEEccCCCEEEEEeCCCeEEEEeCCCCC
Q 003907 432 ATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFG 464 (787)
Q Consensus 432 a~I~slaFSpDg~~LAs~S~dgTVhIwdl~~~g 464 (787)
..++.++||..|+.||++..|+.|.+|.-+..|
T Consensus 257 ~~~w~vSWS~sGn~LaVs~GdNkvtlwke~~~G 289 (299)
T KOG1332|consen 257 DVVWRVSWSLSGNILAVSGGDNKVTLWKENVDG 289 (299)
T ss_pred cceEEEEEeccccEEEEecCCcEEEEEEeCCCC
Confidence 469999999999999999999999999866543
No 99
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.41 E-value=4.2e-13 Score=152.72 Aligned_cols=213 Identities=14% Similarity=0.235 Sum_probs=155.2
Q ss_pred CeEEEEEecCc-EEEEEccCCCceeEeeeeccCcEEEEEEecCCCCCCCCCCccccCcEEEEEEcCCCCCCCCCCCcCCC
Q 003907 75 KQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHL 153 (787)
Q Consensus 75 ~~vL~lG~~~G-~qVWdv~~~~~~~ells~~dg~V~~v~~lP~P~~~~~~d~F~~srpLLavV~~d~~~~~~~~~~~~~~ 153 (787)
.++++.|..+- +-+|.+..... .--+-.|++||.+|.+.+. .-||+. | +
T Consensus 40 ~r~~~~Gg~~~k~~L~~i~kp~~-i~S~~~hespIeSl~f~~~-------------E~Llaa--g-----s--------- 89 (825)
T KOG0267|consen 40 SRSLVTGGEDEKVNLWAIGKPNA-ITSLTGHESPIESLTFDTS-------------ERLLAA--G-----S--------- 89 (825)
T ss_pred ceeeccCCCceeeccccccCCch-hheeeccCCcceeeecCcc-------------hhhhcc--c-----c---------
Confidence 46777777665 56898855332 2235689999999997732 125432 2 0
Q ss_pred CCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCC-CcEEEEEecC--CeEEEE-eCCeEEEEECCCCceeEEEEe
Q 003907 154 GGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFR-SSVCMVRCSP--RIVAVG-LATQIYCFDALTLENKFSVLT 229 (787)
Q Consensus 154 ~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~v~tL~f~-s~V~sV~~s~--~~LaV~-~~~~I~iwD~~T~e~l~tl~t 229 (787)
..++|+|||+..++.+++|.++ ..+..|.|+| .+.|.+ .+..+.+||++..-+.++..+
T Consensus 90 -----------------asgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s 152 (825)
T KOG0267|consen 90 -----------------ASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKS 152 (825)
T ss_pred -----------------cCCceeeeehhhhhhhhhhhccccCcceeeeccceEEeccccccccceehhhhccCceeeecC
Confidence 1369999999999999999865 6899999999 455554 456799999987777777766
Q ss_pred cCCcccCCCCccccccccceeEEcc--ceEEEecCCceecCcceeccccCCCCCcCCCcCCCCCceeEeeehhhhhhhhc
Q 003907 230 YPVPQLAGQGAVGINVGYGPMAVGP--RWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAA 307 (787)
Q Consensus 230 ~p~p~~~~~~~~~~~~~~~~lAlsp--r~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~sp~~g~lva~~a~d~sk~la~ 307 (787)
|+- +...++|+| ||+|.+
T Consensus 153 ~~~-------------vv~~l~lsP~Gr~v~~g----------------------------------------------- 172 (825)
T KOG0267|consen 153 HTR-------------VVDVLRLSPDGRWVASG----------------------------------------------- 172 (825)
T ss_pred Ccc-------------eeEEEeecCCCceeecc-----------------------------------------------
Confidence 443 134455555 444433
Q ss_pred ccceeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEE
Q 003907 308 GLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTA 387 (787)
Q Consensus 308 G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~v~~~~aH~~pIsaLaFSpdG~lLATa 387 (787)
..|.+++|||+..++.+..|+.|+..|.++.|+|..-+|+++
T Consensus 173 --------------------------------------~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~G 214 (825)
T KOG0267|consen 173 --------------------------------------GEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPG 214 (825)
T ss_pred --------------------------------------CCcceeeeecccccccccccccccccccccccCchhhhhccC
Confidence 336789999999999999999999999999999999999999
Q ss_pred EcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCC
Q 003907 388 SVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSK 452 (787)
Q Consensus 388 S~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~LAs~S~d 452 (787)
|.|. ++++||+++. ..+-. .+.....|.+++|+|||+.+++|-..
T Consensus 215 s~d~-tv~f~dletf-----------------e~I~s--~~~~~~~v~~~~fn~~~~~~~~G~q~ 259 (825)
T KOG0267|consen 215 SSDR-TVRFWDLETF-----------------EVISS--GKPETDGVRSLAFNPDGKIVLSGEQI 259 (825)
T ss_pred CCCc-eeeeecccee-----------------EEeec--cCCccCCceeeeecCCceeeecCchh
Confidence 9966 4999998642 11111 11223469999999999988877544
No 100
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.40 E-value=9.6e-13 Score=144.51 Aligned_cols=218 Identities=14% Similarity=0.115 Sum_probs=159.9
Q ss_pred ceeEeeeeccCcEEEEEEecCCCCCCCCCCccccCcEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEE
Q 003907 96 NFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAV 175 (787)
Q Consensus 96 ~~~ells~~dg~V~~v~~lP~P~~~~~~d~F~~srpLLavV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV 175 (787)
....++++|...|.++++.|. +..||+. ++ .+++|
T Consensus 205 k~~~~~~gH~kgvsai~~fp~------------~~hLlLS--~g-------------------------------mD~~v 239 (503)
T KOG0282|consen 205 KLSHNLSGHTKGVSAIQWFPK------------KGHLLLS--GG-------------------------------MDGLV 239 (503)
T ss_pred hheeeccCCccccchhhhccc------------eeeEEEe--cC-------------------------------CCceE
Confidence 345567788889999999873 2235543 21 24799
Q ss_pred EEEECCC-CeEEEEEeCCC-cEEEEEecC---CeEEEEeCCeEEEEECCCCceeEEEEecCCcccCCCCcccccccccee
Q 003907 176 RFYSFQS-HCYEHVLRFRS-SVCMVRCSP---RIVAVGLATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPM 250 (787)
Q Consensus 176 rlWdlkt-g~~v~tL~f~s-~V~sV~~s~---~~LaV~~~~~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~~~~~l 250 (787)
+||++.. +.+++++..++ +|.+++||. ++|.++++..|++||+.||+++.++.+.-.| ..+
T Consensus 240 klW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~~~~~~--------------~cv 305 (503)
T KOG0282|consen 240 KLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETGQVLSRFHLDKVP--------------TCV 305 (503)
T ss_pred EEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeeeeeccccceEEEEEecCCCc--------------eee
Confidence 9999987 89999998775 899999987 6888999999999999999988887653222 111
Q ss_pred EEccceEEEecCCceecCcceeccccCCCCCcCCCcCCCCCceeEeeehhhhhhhhcccceeecccccccCCCCCCCCcc
Q 003907 251 AVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVS 330 (787)
Q Consensus 251 Alspr~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~~s 330 (787)
-+.| ++-
T Consensus 306 kf~p----------------------------------d~~--------------------------------------- 312 (503)
T KOG0282|consen 306 KFHP----------------------------------DNQ--------------------------------------- 312 (503)
T ss_pred ecCC----------------------------------CCC---------------------------------------
Confidence 1110 000
Q ss_pred cCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCC
Q 003907 331 PNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGN 410 (787)
Q Consensus 331 ~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~ 410 (787)
..+..+..|+.|+.||+++++++.....|-++|..+.|=++|+.++|+|+|+ .++||+.... .
T Consensus 313 ---------n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSDdk-s~riWe~~~~-------v 375 (503)
T KOG0282|consen 313 ---------NIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSSDDK-SVRIWENRIP-------V 375 (503)
T ss_pred ---------cEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeeccCc-cEEEEEcCCC-------c
Confidence 0112356789999999999999999999999999999999999999999966 5999998531 0
Q ss_pred CccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEeCCCCCC---cccccccc
Q 003907 411 HKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGG---DSGFQTLS 473 (787)
Q Consensus 411 ~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~~~gg---~~~~~~H~ 473 (787)
...+...-.++ ...+|+.+|.++|+++=|.|.-|-||.+.+.-. ...+.+|.
T Consensus 376 ---------~ik~i~~~~~h--smP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~ 430 (503)
T KOG0282|consen 376 ---------PIKNIADPEMH--TMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHS 430 (503)
T ss_pred ---------cchhhcchhhc--cCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhccee
Confidence 11122222222 367899999999999999999999999764322 23455663
No 101
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.40 E-value=4.7e-11 Score=124.67 Aligned_cols=132 Identities=14% Similarity=0.198 Sum_probs=98.5
Q ss_pred CCEEEEEECCCCeEEEEEeCCCcEEEEEecC-----CeEEEEeCC-eEEEEECCCCceeEEEEecCCcccCCCCcccccc
Q 003907 172 PTAVRFYSFQSHCYEHVLRFRSSVCMVRCSP-----RIVAVGLAT-QIYCFDALTLENKFSVLTYPVPQLAGQGAVGINV 245 (787)
Q Consensus 172 p~tVrlWdlktg~~v~tL~f~s~V~sV~~s~-----~~LaV~~~~-~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~ 245 (787)
+.+|++||..|-+....+++++.||+=+++| -++|+|..+ +|+++|+..|..-|+|.+|-..
T Consensus 123 DhtlKVWDtnTlQ~a~~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~------------ 190 (397)
T KOG4283|consen 123 DHTLKVWDTNTLQEAVDFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDG------------ 190 (397)
T ss_pred cceEEEeecccceeeEEeecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCc------------
Confidence 4799999999999999999999999888877 467777765 7999999999999999887541
Q ss_pred ccceeEEcc--ceEEEecCCceecCcceeccccCCCCCcCCCcCCCCCceeEeeehhhhhhhhcccceeecccccccCCC
Q 003907 246 GYGPMAVGP--RWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPD 323 (787)
Q Consensus 246 ~~~~lAlsp--r~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~ 323 (787)
.-.+.++| .|+-
T Consensus 191 -vlaV~Wsp~~e~vL----------------------------------------------------------------- 204 (397)
T KOG4283|consen 191 -VLAVEWSPSSEWVL----------------------------------------------------------------- 204 (397)
T ss_pred -eEEEEeccCceeEE-----------------------------------------------------------------
Confidence 12233444 2221
Q ss_pred CCCCCcccCCccccccccccccCCCceEEEEECCCC------------c---EEEEeccCCCCeEEEEECCCCCEEEEEE
Q 003907 324 GSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTR------------A---IISQFKAHTSPISALCFDPSGTLLVTAS 388 (787)
Q Consensus 324 ~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~------------~---~v~~~~aH~~pIsaLaFSpdG~lLATaS 388 (787)
++++.||.|++||++.- + .+.+=.+|.+.|+.+||+.+|.+|++++
T Consensus 205 -------------------atgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~g 265 (397)
T KOG4283|consen 205 -------------------ATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCG 265 (397)
T ss_pred -------------------EecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhcc
Confidence 23345666666666431 1 1222347889999999999999999999
Q ss_pred cCCCEEEEEeCCC
Q 003907 389 VYGNNINIFRIMP 401 (787)
Q Consensus 389 ~dG~~IrVWdi~~ 401 (787)
.|++ +++|+...
T Consensus 266 td~r-~r~wn~~~ 277 (397)
T KOG4283|consen 266 TDDR-IRVWNMES 277 (397)
T ss_pred Cccc-eEEeeccc
Confidence 9776 99999754
No 102
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.39 E-value=7.8e-12 Score=131.05 Aligned_cols=99 Identities=17% Similarity=0.230 Sum_probs=81.2
Q ss_pred ceEEEEECCCCcEEEEe---ccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEE
Q 003907 349 GIVVVKDFVTRAIISQF---KAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKL 425 (787)
Q Consensus 349 G~V~IwDl~s~~~v~~~---~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l 425 (787)
-++++||+.+-++...- ..|++.|+++.+|+.|++.+|||.||. |+|||=-. .+++..+
T Consensus 238 p~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~-IklwDGVS-----------------~rCv~t~ 299 (430)
T KOG0640|consen 238 PTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSSTGSLYVTASKDGA-IKLWDGVS-----------------NRCVRTI 299 (430)
T ss_pred CceeEEeccceeEeeecCcccccccceeEEEecCCccEEEEeccCCc-EEeecccc-----------------HHHHHHH
Confidence 36788888877654332 369999999999999999999999887 99999421 2566666
Q ss_pred ecccccccEEEEEEccCCCEEEEEeCCCeEEEEeCCCCCC
Q 003907 426 HRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGG 465 (787)
Q Consensus 426 ~rG~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~~~gg 465 (787)
.+.+..+.|.+..|+.+|+||.+++.|.+|++|.|.+...
T Consensus 300 ~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~ 339 (430)
T KOG0640|consen 300 GNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRM 339 (430)
T ss_pred HhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCce
Confidence 6666667899999999999999999999999999987543
No 103
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.39 E-value=1.2e-11 Score=140.34 Aligned_cols=218 Identities=17% Similarity=0.235 Sum_probs=144.3
Q ss_pred CEEEEEECCCCeEEEEEeCC-CcEEEEEecC-----CeEEEEeCC-eEEEEECC-CCceeEEEEecCCcccCCCCccccc
Q 003907 173 TAVRFYSFQSHCYEHVLRFR-SSVCMVRCSP-----RIVAVGLAT-QIYCFDAL-TLENKFSVLTYPVPQLAGQGAVGIN 244 (787)
Q Consensus 173 ~tVrlWdlktg~~v~tL~f~-s~V~sV~~s~-----~~LaV~~~~-~I~iwD~~-T~e~l~tl~t~p~p~~~~~~~~~~~ 244 (787)
+++|||||..-++.+.++-+ +.|+.+.++. ++||.+..+ -||+||+. ...+++++.+|...
T Consensus 481 GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSss----------- 549 (1080)
T KOG1408|consen 481 GNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSS----------- 549 (1080)
T ss_pred CceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccc-----------
Confidence 68999999998888888755 6999999875 688887755 49999974 56677788776652
Q ss_pred cccce--eEEcc---ceEEEecCCceecCcceeccccCCCCCcCCCcCCCCCceeEeeehhhhhhhhcccceeecccccc
Q 003907 245 VGYGP--MAVGP---RWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQE 319 (787)
Q Consensus 245 ~~~~~--lAlsp---r~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~ 319 (787)
... +|.+- +.|..+.+..+....-+. .+.|.+.-| +. +++++..
T Consensus 550 --ITsvKFa~~gln~~MiscGADksimFr~~qk---------------~~~g~~f~r-----------~t-~t~~ktT-- 598 (1080)
T KOG1408|consen 550 --ITSVKFACNGLNRKMISCGADKSIMFRVNQK---------------ASSGRLFPR-----------HT-QTLSKTT-- 598 (1080)
T ss_pred --eeEEEEeecCCceEEEeccCchhhheehhcc---------------ccCceeccc-----------cc-cccccce--
Confidence 112 12111 333333332211110000 000110000 00 1111110
Q ss_pred cCCCCCCCCcccCCccccccccccccCCCceEEEEECCCCcEEEEecc---CCCCeEEEEECCCCCEEEEEEcCCCEEEE
Q 003907 320 LLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKA---HTSPISALCFDPSGTLLVTASVYGNNINI 396 (787)
Q Consensus 320 l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~v~~~~a---H~~pIsaLaFSpdG~lLATaS~dG~~IrV 396 (787)
-..+...+.|+. .+.+.+|..|+|||+.+++....|++ |++..-.+..+|+|.||||... ++++.+
T Consensus 599 ------lYDm~Vdp~~k~----v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScs-dktl~~ 667 (1080)
T KOG1408|consen 599 ------LYDMAVDPTSKL----VVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCS-DKTLCF 667 (1080)
T ss_pred ------EEEeeeCCCcce----EEEEecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeec-CCceEE
Confidence 111223333443 34678999999999999999999985 7778889999999999999888 556999
Q ss_pred EeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEeCCC
Q 003907 397 FRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSP 462 (787)
Q Consensus 397 Wdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~~ 462 (787)
||.-. | +++.... |+ ...|+.+.|++|.+.|.+.+.||.|.||.+..
T Consensus 668 ~Df~s-------g----------EcvA~m~-GH-sE~VTG~kF~nDCkHlISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 668 VDFVS-------G----------ECVAQMT-GH-SEAVTGVKFLNDCKHLISVSGDGCIFVWKLPL 714 (1080)
T ss_pred EEecc-------c----------hhhhhhc-Cc-chheeeeeecccchhheeecCCceEEEEECch
Confidence 99843 3 4555543 43 34599999999999999999999999999864
No 104
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.39 E-value=1.8e-11 Score=142.05 Aligned_cols=107 Identities=17% Similarity=0.287 Sum_probs=87.0
Q ss_pred ccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECC-CCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcce
Q 003907 342 GADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDP-SGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHV 420 (787)
Q Consensus 342 ~~s~~~dG~V~IwDl~s~~~v~~~~aH~~pIsaLaFSp-dG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~ 420 (787)
+.+++-|.+|++|++....++..| .|..-|+|++|+| |.+|+++||.||+ ||||+|... ...
T Consensus 383 LLSSSMDKTVRLWh~~~~~CL~~F-~HndfVTcVaFnPvDDryFiSGSLD~K-vRiWsI~d~---------------~Vv 445 (712)
T KOG0283|consen 383 LLSSSMDKTVRLWHPGRKECLKVF-SHNDFVTCVAFNPVDDRYFISGSLDGK-VRLWSISDK---------------KVV 445 (712)
T ss_pred eEeccccccEEeecCCCcceeeEE-ecCCeeEEEEecccCCCcEeecccccc-eEEeecCcC---------------eeE
Confidence 346778999999999999999998 5899999999999 8999999999886 999999531 012
Q ss_pred EEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEeCCCCCCccccc
Q 003907 421 HLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQ 470 (787)
Q Consensus 421 ~l~~l~rG~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~~~gg~~~~~ 470 (787)
..++++ ..|++++|+|||++.++|+.+|.+++|+.....-...++
T Consensus 446 ~W~Dl~-----~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~ 490 (712)
T KOG0283|consen 446 DWNDLR-----DLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFH 490 (712)
T ss_pred eehhhh-----hhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeee
Confidence 223332 459999999999999999999999999987654444433
No 105
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.38 E-value=3e-10 Score=125.50 Aligned_cols=263 Identities=17% Similarity=0.168 Sum_probs=161.5
Q ss_pred CCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCceeEeeeeccCcEEEEEEecCCCCCCCCCCccccCcEE
Q 003907 55 LKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFL 133 (787)
Q Consensus 55 ~~~~v~wa~Fd~l~~~~~~~~~vL~lG~~~G-~qVWdv~~~~~~~ells~~dg~V~~v~~lP~P~~~~~~d~F~~srpLL 133 (787)
+|..|+.+.|.. . +. +++|..+| +-||+.....-.+.+. .|+|.|.++-|+-+ ..||
T Consensus 245 ekk~Vl~v~F~e--n-----gd-viTgDS~G~i~Iw~~~~~~~~k~~~-aH~ggv~~L~~lr~-------------Gtll 302 (626)
T KOG2106|consen 245 EKKFVLCVTFLE--N-----GD-VITGDSGGNILIWSKGTNRISKQVH-AHDGGVFSLCMLRD-------------GTLL 302 (626)
T ss_pred cceEEEEEEEcC--C-----CC-EEeecCCceEEEEeCCCceEEeEee-ecCCceEEEEEecC-------------ccEe
Confidence 557788888853 2 33 56677777 7999985443334444 99999999999943 2233
Q ss_pred EEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCC---CcEEEEEecCCeEEEEeC
Q 003907 134 LVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFR---SSVCMVRCSPRIVAVGLA 210 (787)
Q Consensus 134 avV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~v~tL~f~---s~V~sV~~s~~~LaV~~~ 210 (787)
+|+ .+++|..|| ..-+.+..++.+ ++|+.|.-++.-|.||..
T Consensus 303 ---SGg-------------------------------KDRki~~Wd-~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTt 347 (626)
T KOG2106|consen 303 ---SGG-------------------------------KDRKIILWD-DNYRKLRETELPEQFGPIRTVAEGKGDILVGTT 347 (626)
T ss_pred ---ecC-------------------------------ccceEEecc-ccccccccccCchhcCCeeEEecCCCcEEEeec
Confidence 232 258999999 444555566655 588999887744666654
Q ss_pred Ce-EEEEECCCCceeEEEE--ecCCcccCCCCccccccccceeEEcc--ceEEEecCCc--eecCcceeccccCCC-CCc
Q 003907 211 TQ-IYCFDALTLENKFSVL--TYPVPQLAGQGAVGINVGYGPMAVGP--RWLAYASNTL--LLSNSGRLSPQNLTP-SGV 282 (787)
Q Consensus 211 ~~-I~iwD~~T~e~l~tl~--t~p~p~~~~~~~~~~~~~~~~lAlsp--r~LAyas~~~--~l~~~g~~s~q~lt~-~~~ 282 (787)
.. |--=.+.+ -+++. +|.. ..--+|..| ..++.++.+. .+|+.-+..|..... ++.
T Consensus 348 rN~iL~Gt~~~---~f~~~v~gh~d-------------elwgla~hps~~q~~T~gqdk~v~lW~~~k~~wt~~~~d~~~ 411 (626)
T KOG2106|consen 348 RNFILQGTLEN---GFTLTVQGHGD-------------ELWGLATHPSKNQLLTCGQDKHVRLWNDHKLEWTKIIEDPAE 411 (626)
T ss_pred cceEEEeeecC---CceEEEEeccc-------------ceeeEEcCCChhheeeccCcceEEEccCCceeEEEEecCcee
Confidence 43 32222332 22322 2221 012345544 3445554432 233322222222221 111
Q ss_pred CCCcCCCCCceeEeeehhhhhhhhcccceeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECCCCcEE
Q 003907 283 SPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAII 362 (787)
Q Consensus 283 s~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~v 362 (787)
...+.|.| .++.+...|...|.|.++...+
T Consensus 412 ~~~fhpsg--------------------------------------------------~va~Gt~~G~w~V~d~e~~~lv 441 (626)
T KOG2106|consen 412 CADFHPSG--------------------------------------------------VVAVGTATGRWFVLDTETQDLV 441 (626)
T ss_pred EeeccCcc--------------------------------------------------eEEEeeccceEEEEecccceeE
Confidence 12222221 2334556788899999985544
Q ss_pred EEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccC
Q 003907 363 SQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHY 442 (787)
Q Consensus 363 ~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpD 442 (787)
. ++.-..+|++++|+|+|.+||.||.|+. |-||.+... | ....+..+ .+.+.|+.+.||+|
T Consensus 442 ~-~~~d~~~ls~v~ysp~G~~lAvgs~d~~-iyiy~Vs~~------g----------~~y~r~~k-~~gs~ithLDwS~D 502 (626)
T KOG2106|consen 442 T-IHTDNEQLSVVRYSPDGAFLAVGSHDNH-IYIYRVSAN------G----------RKYSRVGK-CSGSPITHLDWSSD 502 (626)
T ss_pred E-EEecCCceEEEEEcCCCCEEEEecCCCe-EEEEEECCC------C----------cEEEEeee-ecCceeEEeeecCC
Confidence 4 4433889999999999999999999665 999998542 3 22222221 22268999999999
Q ss_pred CCEEEEEeCCCeEEEEe
Q 003907 443 SQWIAIVSSKGTCHVFV 459 (787)
Q Consensus 443 g~~LAs~S~dgTVhIwd 459 (787)
+++|.+-|.|-.+-.|+
T Consensus 503 s~~~~~~S~d~eiLyW~ 519 (626)
T KOG2106|consen 503 SQFLVSNSGDYEILYWK 519 (626)
T ss_pred CceEEeccCceEEEEEc
Confidence 99999999999999993
No 106
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.38 E-value=4.8e-11 Score=125.97 Aligned_cols=103 Identities=18% Similarity=0.224 Sum_probs=83.2
Q ss_pred ceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecc
Q 003907 349 GIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRG 428 (787)
Q Consensus 349 G~V~IwDl~s~~~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG 428 (787)
..+-||.-..++++..+-+|.+.|+.|+|.++|+.|.+++.++..|-.||++.. + ..+|.|.|.
T Consensus 230 q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~------~----------~pv~~L~rh 293 (406)
T KOG2919|consen 230 QRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYS------R----------DPVYALERH 293 (406)
T ss_pred ceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhc------c----------chhhhhhhh
Confidence 344566666778888899999999999999999999999998888999999642 2 577888664
Q ss_pred c--ccccEEEEEEccCCCEEEEEeCCCeEEEEeCCCCCCccc
Q 003907 429 I--TSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSG 468 (787)
Q Consensus 429 ~--~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~~~gg~~~ 468 (787)
. ++..|+ ....|+|++||+|+.||.|++||++.++.++.
T Consensus 294 v~~TNQRI~-FDld~~~~~LasG~tdG~V~vwdlk~~gn~~s 334 (406)
T KOG2919|consen 294 VGDTNQRIL-FDLDPKGEILASGDTDGSVRVWDLKDLGNEVS 334 (406)
T ss_pred ccCccceEE-EecCCCCceeeccCCCccEEEEecCCCCCccc
Confidence 3 333454 45569999999999999999999999888553
No 107
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.37 E-value=6.6e-11 Score=124.34 Aligned_cols=275 Identities=15% Similarity=0.168 Sum_probs=174.0
Q ss_pred cccceecccCCCCCCCcEEEEEEeeccCCCCCCCeEEEEEecC-cEEEEEccCCCceeEeeeeccCcEEEEEEecCCCCC
Q 003907 42 ASVAASISNASEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQN-GFQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKD 120 (787)
Q Consensus 42 ~s~~~~~~~~~~~~~~~v~wa~Fd~l~~~~~~~~~vL~lG~~~-G~qVWdv~~~~~~~ells~~dg~V~~v~~lP~P~~~ 120 (787)
.+|+..+....++|||.|--+.-+. .+.++..++.+ .-+||.++ .+.|.-.+.+|-|.|.+++|.|
T Consensus 134 ~t~~~~lvre~~GHkDGiW~Vaa~~-------tqpi~gtASADhTA~iWs~E-sg~CL~~Y~GH~GSVNsikfh~----- 200 (481)
T KOG0300|consen 134 GTVKFRLVRELEGHKDGIWHVAADS-------TQPICGTASADHTARIWSLE-SGACLATYTGHTGSVNSIKFHN----- 200 (481)
T ss_pred CceeEeehhhhcccccceeeehhhc-------CCcceeecccccceeEEeec-cccceeeecccccceeeEEecc-----
Confidence 3466777777999999987666553 23466666665 58999996 5888889999999999999875
Q ss_pred CCCCCccccCcEEEEEEcCCCCCC--------CC--CCCcCCCCC--cccCCcCCCCCC----CCCCCCEEEEEECCCCe
Q 003907 121 DGCEGFRKLHPFLLVVAGEDTNTL--------AP--GQNRSHLGG--VRDGMMDSQSGN----CVNSPTAVRFYSFQSHC 184 (787)
Q Consensus 121 ~~~d~F~~srpLLavV~~d~~~~~--------~~--~~~~~~~~~--~r~g~~~~~~~~----~~~~p~tVrlWdlktg~ 184 (787)
++.|++..+||++..- -| ....++.+. +.+. |.+..+ ......+|| .
T Consensus 201 --------s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~s--De~~~d~d~~~~sD~~tiR-------v 263 (481)
T KOG0300|consen 201 --------SGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHS--DEHNRDTDSSEKSDGHTIR-------V 263 (481)
T ss_pred --------ccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcc--cccccccccccccCCceee-------e
Confidence 3447766666553210 00 000011100 0000 000000 000011232 2
Q ss_pred EEEEEeCC-CcEEEEEec--CC-eEEEEeCCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEccceEEEe
Q 003907 185 YEHVLRFR-SSVCMVRCS--PR-IVAVGLATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYA 260 (787)
Q Consensus 185 ~v~tL~f~-s~V~sV~~s--~~-~LaV~~~~~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~~~~~lAlspr~LAya 260 (787)
.+..|..+ +.|.+..+- .+ ++..+-+.+..+||+.|++.++.|.+|... +.-+.-.|
T Consensus 264 Pl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~E-------------LtHcstHp------ 324 (481)
T KOG0300|consen 264 PLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDSE-------------LTHCSTHP------ 324 (481)
T ss_pred eeeeeeccccceEehhhhcCcceeeeeeccccceeeeeccCceeccccCcchh-------------ccccccCC------
Confidence 34455443 456555552 24 444455778999999999988888776542 01111111
Q ss_pred cCCceecCcceeccccCCCCCcCCCcCCCCCceeEeeehhhhhhhhcccceeecccccccCCCCCCCCcccCCccccccc
Q 003907 261 SNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRH 340 (787)
Q Consensus 261 s~~~~l~~~g~~s~q~lt~~~~s~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~ 340 (787)
. ..||
T Consensus 325 ----------------------------t-QrLV---------------------------------------------- 329 (481)
T KOG0300|consen 325 ----------------------------T-QRLV---------------------------------------------- 329 (481)
T ss_pred ----------------------------c-ceEE----------------------------------------------
Confidence 0 0111
Q ss_pred cccccCCCceEEEEECCCC-cEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcc
Q 003907 341 AGADMDNAGIVVVKDFVTR-AIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSH 419 (787)
Q Consensus 341 ~~~s~~~dG~V~IwDl~s~-~~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~ 419 (787)
.+.+.|-+.++||++.. ..+..|++|+..|+++.|..+. .++++|+ +.+|+|||++.. .
T Consensus 330 --vTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd-~vVSgSD-DrTvKvWdLrNM------R---------- 389 (481)
T KOG0300|consen 330 --VTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDD-RVVSGSD-DRTVKVWDLRNM------R---------- 389 (481)
T ss_pred --EEeccCceeEeccchhhcceeeeecccccceeEEEEecCC-ceeecCC-CceEEEeeeccc------c----------
Confidence 12345778999999843 4678899999999999999765 5678887 667999999642 1
Q ss_pred eEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEeCCCC
Q 003907 420 VHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPF 463 (787)
Q Consensus 420 ~~l~~l~rG~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~~~ 463 (787)
..+.+++. ...+..++.|.-+..||.--++.-|+|||++-.
T Consensus 390 splATIRt---dS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~ 430 (481)
T KOG0300|consen 390 SPLATIRT---DSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGN 430 (481)
T ss_pred Ccceeeec---CCccceeEeecCCceEEeccCCceEEEEecCCC
Confidence 25666653 346888999998899999999999999999853
No 108
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.37 E-value=1.7e-11 Score=134.87 Aligned_cols=118 Identities=21% Similarity=0.307 Sum_probs=89.5
Q ss_pred ccCCCceEEEEECCCCcEEEEe-ccCCCCeEEEEECCC-CCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceE
Q 003907 344 DMDNAGIVVVKDFVTRAIISQF-KAHTSPISALCFDPS-GTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVH 421 (787)
Q Consensus 344 s~~~dG~V~IwDl~s~~~v~~~-~aH~~pIsaLaFSpd-G~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~ 421 (787)
.++.+|.|.+||+....++..+ ++|..|...|||+|. ..+|||.+. ++.|.+||+... ..
T Consensus 182 ~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~-Dkki~~yD~~s~-----------------~s 243 (673)
T KOG4378|consen 182 IASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGY-DKKINIYDIRSQ-----------------AS 243 (673)
T ss_pred eeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecc-cceEEEeecccc-----------------cc
Confidence 5678999999999988877765 589999999999995 557888888 556999998531 11
Q ss_pred EEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEeCCCCCCccc-cccccCCCCCCccc
Q 003907 422 LYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSG-FQTLSSQGGDPYLF 482 (787)
Q Consensus 422 l~~l~rG~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~~~gg~~~-~~~H~~~~~~~~~~ 482 (787)
...+. -.+....++|+++|.+|++|+.+|.|..||+...+.++. +..|...|..-.+.
T Consensus 244 ~~~l~---y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~sVt~vafq 302 (673)
T KOG4378|consen 244 TDRLT---YSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAHDASVTRVAFQ 302 (673)
T ss_pred cceee---ecCCcceeeecCCceEEEeecCCceEEEEecccCCCCceEeeecccceeEEEee
Confidence 11111 123578999999999999999999999999998777765 45676554433333
No 109
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.36 E-value=1.7e-10 Score=121.71 Aligned_cols=183 Identities=13% Similarity=0.155 Sum_probs=115.7
Q ss_pred CCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEe
Q 003907 347 NAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLH 426 (787)
Q Consensus 347 ~dG~V~IwDl~s~~~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~ 426 (787)
.|-+|+..++.+++.++.|.+|...|++|+.+|-+..++++|.|+ +||+||++.. . ...+..+.
T Consensus 78 ~d~tIryLsl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~-tvrLWDlR~~------~---------cqg~l~~~ 141 (311)
T KOG1446|consen 78 EDDTIRYLSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDK-TVRLWDLRVK------K---------CQGLLNLS 141 (311)
T ss_pred CCCceEEEEeecCceEEEcCCCCceEEEEEecCCCCeEEecccCC-eEEeeEecCC------C---------CceEEecC
Confidence 367899999999999999999999999999999999999999955 5999999732 0 01222221
Q ss_pred cccccccEEEEEEccCCCEEEEEeCCCeEEEEeCCCCCCcc-ccccccCCCCCCcccCCCCCCccccCCCCCcCCcCCCC
Q 003907 427 RGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDS-GFQTLSSQGGDPYLFPVLSLPWWCTSSGISEQQCVLPP 505 (787)
Q Consensus 427 rG~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~~~gg~~-~~~~H~~~~~~~~~~~~~~~~~~~~~~~s~~q~~~~~p 505 (787)
+ . ..+||.|+|-++|++...+.|+|||+..+++.+ ... ..+....+.|..-++|++...+
T Consensus 142 -~-~----pi~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf----------~i~~~~~~ew~~l~FS~dGK~i--- 202 (311)
T KOG1446|consen 142 -G-R----PIAAFDPEGLIFALANGSELIKLYDLRSFDKGPFTTF----------SITDNDEAEWTDLEFSPDGKSI--- 202 (311)
T ss_pred -C-C----cceeECCCCcEEEEecCCCeEEEEEecccCCCCceeE----------ccCCCCccceeeeEEcCCCCEE---
Confidence 1 1 348999999999999999999999999885432 110 0011223344444555444332
Q ss_pred Cceeecceee-EEecCCCccccccccccccCCccccccceeeeecccCccccccccccccCccccEEEEcCCccEEEEec
Q 003907 506 PPVTLSVVSR-IKYSSFGWLNTVSNASASSMGKVFVPSGAVAAVFHNSIAHSSQHVNSRTNSLEHLLVYTPSGYVVQHEL 584 (787)
Q Consensus 506 ~~~~l~~v~~-i~~~~~~w~~~v~~~~~~a~~~~~~p~~~v~~~f~~~~~~~~~~~~~~~~~~~~LlV~s~~G~l~~y~l 584 (787)
.|+--.. |..- ....|++-...+--.+...+| +.++|..+ -..+|..+-||.+.+|++
T Consensus 203 ---LlsT~~s~~~~l-DAf~G~~~~tfs~~~~~~~~~---~~a~ftPd--------------s~Fvl~gs~dg~i~vw~~ 261 (311)
T KOG1446|consen 203 ---LLSTNASFIYLL-DAFDGTVKSTFSGYPNAGNLP---LSATFTPD--------------SKFVLSGSDDGTIHVWNL 261 (311)
T ss_pred ---EEEeCCCcEEEE-EccCCcEeeeEeeccCCCCcc---eeEEECCC--------------CcEEEEecCCCcEEEEEc
Confidence 1111000 0100 112333322222223333344 45556543 446888888899999999
Q ss_pred c
Q 003907 585 L 585 (787)
Q Consensus 585 ~ 585 (787)
+
T Consensus 262 ~ 262 (311)
T KOG1446|consen 262 E 262 (311)
T ss_pred C
Confidence 3
No 110
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.36 E-value=2.2e-10 Score=120.54 Aligned_cols=175 Identities=14% Similarity=0.115 Sum_probs=120.3
Q ss_pred CEEEEEECCCCeEEEEEeCCCcEEEEEecC--CeE-EEEe-CCeEEEEECCCCceeEEEEecCCcccCCCCccccccccc
Q 003907 173 TAVRFYSFQSHCYEHVLRFRSSVCMVRCSP--RIV-AVGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYG 248 (787)
Q Consensus 173 ~tVrlWdlktg~~v~tL~f~s~V~sV~~s~--~~L-aV~~-~~~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~~~~ 248 (787)
++|++||+.+++.+..+.....+..+.+++ +.| +++. ++.|++||+.+++.+..+..+..+
T Consensus 11 ~~v~~~d~~t~~~~~~~~~~~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~--------------- 75 (300)
T TIGR03866 11 NTISVIDTATLEVTRTFPVGQRPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPDP--------------- 75 (300)
T ss_pred CEEEEEECCCCceEEEEECCCCCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCCc---------------
Confidence 689999999999999998777777888877 455 3443 468999999998766554332111
Q ss_pred eeEEccceEEEecCCceecCcceeccccCCCCCcCCCcCCCCCceeEeeehhhhhhhhcccceeecccccccCCCCCCCC
Q 003907 249 PMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSP 328 (787)
Q Consensus 249 ~lAlspr~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~ 328 (787)
..+++..+. ..++
T Consensus 76 ------~~~~~~~~g---------------------------~~l~---------------------------------- 88 (300)
T TIGR03866 76 ------ELFALHPNG---------------------------KILY---------------------------------- 88 (300)
T ss_pred ------cEEEECCCC---------------------------CEEE----------------------------------
Confidence 112222110 0000
Q ss_pred cccCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCC
Q 003907 329 VSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGS 408 (787)
Q Consensus 329 ~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~ 408 (787)
.....++.+++||+.+.+.+..+..+ ..+.+++|+|+|.+|++++.++..+.+||...
T Consensus 89 --------------~~~~~~~~l~~~d~~~~~~~~~~~~~-~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~------- 146 (300)
T TIGR03866 89 --------------IANEDDNLVTVIDIETRKVLAEIPVG-VEPEGMAVSPDGKIVVNTSETTNMAHFIDTKT------- 146 (300)
T ss_pred --------------EEcCCCCeEEEEECCCCeEEeEeeCC-CCcceEEECCCCCEEEEEecCCCeEEEEeCCC-------
Confidence 01134678999999998888877643 34688999999999999998777788889743
Q ss_pred CCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEe-CCCeEEEEeCCCCC
Q 003907 409 GNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVS-SKGTCHVFVLSPFG 464 (787)
Q Consensus 409 g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~LAs~S-~dgTVhIwdl~~~g 464 (787)
+ ..+..+..+ ..+..++|+|||++|++++ .+++|++||+....
T Consensus 147 ~----------~~~~~~~~~---~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~ 190 (300)
T TIGR03866 147 Y----------EIVDNVLVD---QRPRFAEFTADGKELWVSSEIGGTVSVIDVATRK 190 (300)
T ss_pred C----------eEEEEEEcC---CCccEEEECCCCCEEEEEcCCCCEEEEEEcCcce
Confidence 1 222222222 2356799999999986554 58999999998643
No 111
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.34 E-value=1.6e-10 Score=131.57 Aligned_cols=200 Identities=17% Similarity=0.234 Sum_probs=132.9
Q ss_pred CCEEEEEECCCCeEEEEEeCCCc-------EEEEEecCCeEEE-EeCCeEEEEECCCCceeEEEEecCCcccCCCCcccc
Q 003907 172 PTAVRFYSFQSHCYEHVLRFRSS-------VCMVRCSPRIVAV-GLATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGI 243 (787)
Q Consensus 172 p~tVrlWdlktg~~v~tL~f~s~-------V~sV~~s~~~LaV-~~~~~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~ 243 (787)
+++++||+-+.++.+.+..|.++ |+-..+.+-+|++ +.|..|.+|...+.+.+++|.+|..
T Consensus 34 d~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~s----------- 102 (745)
T KOG0301|consen 34 DGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQAEPLYTLKGHKS----------- 102 (745)
T ss_pred CCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccceEEEEecCCCCchhhhhcccc-----------
Confidence 36899999988887765554321 3333333344565 4567899999999999999999876
Q ss_pred ccccceeEEcc---ceEEEecCC--ceecCcceeccccCCCCCcCCCcCCCCCceeEeeehhhhhhhhcccceeeccccc
Q 003907 244 NVGYGPMAVGP---RWLAYASNT--LLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQ 318 (787)
Q Consensus 244 ~~~~~~lAlsp---r~LAyas~~--~~l~~~g~~s~q~lt~~~~s~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~ 318 (787)
+.|+++. -.|-+++-+ .++|..|.+. ..+.+|.
T Consensus 103 ----nVC~ls~~~~~~~iSgSWD~TakvW~~~~l~-------------------------------------~~l~gH~- 140 (745)
T KOG0301|consen 103 ----NVCSLSIGEDGTLISGSWDSTAKVWRIGELV-------------------------------------YSLQGHT- 140 (745)
T ss_pred ----ceeeeecCCcCceEecccccceEEecchhhh-------------------------------------cccCCcc-
Confidence 2444431 112222211 1222111110 0001110
Q ss_pred ccCCCCCCCCcccCCcccccc---ccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEE
Q 003907 319 ELLPDGSSSPVSPNSVWKVGR---HAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNIN 395 (787)
Q Consensus 319 ~l~p~~s~~~~s~s~~~~~~~---~~~~s~~~dG~V~IwDl~s~~~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~Ir 395 (787)
.+.|.... ....+++.|.+|++|.- ++.+.+|.+|++-|..|++=+++. +++||.||. ||
T Consensus 141 -------------asVWAv~~l~e~~~vTgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~~~-flScsNDg~-Ir 203 (745)
T KOG0301|consen 141 -------------ASVWAVASLPENTYVTGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDDSH-FLSCSNDGS-IR 203 (745)
T ss_pred -------------hheeeeeecCCCcEEeccCcceeeeccC--CchhhhhccchhheeeeEEecCCC-eEeecCCce-EE
Confidence 11121111 12347888999999985 788999999999999999988764 668999775 99
Q ss_pred EEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEeCC
Q 003907 396 IFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLS 461 (787)
Q Consensus 396 VWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~ 461 (787)
.|++. | ..+.+.. | |+.-|++++-.++++.+++++.|+|++||+..
T Consensus 204 ~w~~~--------g----------e~l~~~~-g-htn~vYsis~~~~~~~Ivs~gEDrtlriW~~~ 249 (745)
T KOG0301|consen 204 LWDLD--------G----------EVLLEMH-G-HTNFVYSISMALSDGLIVSTGEDRTLRIWKKD 249 (745)
T ss_pred EEecc--------C----------ceeeeee-c-cceEEEEEEecCCCCeEEEecCCceEEEeecC
Confidence 99983 3 4677765 4 34569999988888999999999999999976
No 112
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.34 E-value=4.3e-12 Score=150.93 Aligned_cols=246 Identities=19% Similarity=0.243 Sum_probs=166.2
Q ss_pred EEeeccCCCCCCC--eEEEEEecCc-EEEEEccC--CCceeEe---eeeccCcEEEEEEecCCCCCCCCCCccccCcEEE
Q 003907 63 GFDRLEYGPSVFK--QVLLLGYQNG-FQVLDVED--ASNFNEL---VSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLL 134 (787)
Q Consensus 63 ~Fd~l~~~~~~~~--~vL~lG~~~G-~qVWdv~~--~~~~~el---ls~~dg~V~~v~~lP~P~~~~~~d~F~~srpLLa 134 (787)
+|++|..+....+ -+|+.|..+| |-+||... .++-.++ .+.|.|+|+.+.|.| |.++ +||
T Consensus 66 rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~----------~q~n--lLA 133 (1049)
T KOG0307|consen 66 RFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNP----------FQGN--LLA 133 (1049)
T ss_pred cceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccc----------cCCc--eee
Confidence 4666555432222 4788888887 99999976 2444444 457889999999886 4444 775
Q ss_pred EEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEE---eCCCcEEEEEecC---CeEEEE
Q 003907 135 VVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVL---RFRSSVCMVRCSP---RIVAVG 208 (787)
Q Consensus 135 vV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~v~tL---~f~s~V~sV~~s~---~~LaV~ 208 (787)
. |++ .+.|.|||++.-+.--++ .+.+.|..|++|+ ++||.+
T Consensus 134 S--Ga~-------------------------------~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~ 180 (1049)
T KOG0307|consen 134 S--GAD-------------------------------DGEILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASG 180 (1049)
T ss_pred c--cCC-------------------------------CCcEEEeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhcc
Confidence 4 322 258999999874433333 3557899999999 588887
Q ss_pred eCC-eEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCcceeccccCCCCCcCCCcC
Q 003907 209 LAT-QIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTS 287 (787)
Q Consensus 209 ~~~-~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~~~~~lAlspr~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~s 287 (787)
... ++.|||++.-+.+..+..++.. .....+++.|
T Consensus 181 s~sg~~~iWDlr~~~pii~ls~~~~~-----------~~~S~l~WhP--------------------------------- 216 (1049)
T KOG0307|consen 181 SPSGRAVIWDLRKKKPIIKLSDTPGR-----------MHCSVLAWHP--------------------------------- 216 (1049)
T ss_pred CCCCCceeccccCCCcccccccCCCc-----------cceeeeeeCC---------------------------------
Confidence 765 8999999866544433332220 0011222222
Q ss_pred CCCCceeEeeehhhhhhhhcccceeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECCCC-cEEEEec
Q 003907 288 PGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTR-AIISQFK 366 (787)
Q Consensus 288 p~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~-~~v~~~~ 366 (787)
++.+.++ .+ ...+..-.|.+||++.- ..+..++
T Consensus 217 -~~aTql~---------------------------------~A------------s~dd~~PviqlWDlR~assP~k~~~ 250 (1049)
T KOG0307|consen 217 -DHATQLL---------------------------------VA------------SGDDSAPVIQLWDLRFASSPLKILE 250 (1049)
T ss_pred -CCceeee---------------------------------ee------------cCCCCCceeEeecccccCCchhhhc
Confidence 1111000 00 01123457999998764 4677889
Q ss_pred cCCCCeEEEEECCCC-CEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCC-C
Q 003907 367 AHTSPISALCFDPSG-TLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYS-Q 444 (787)
Q Consensus 367 aH~~pIsaLaFSpdG-~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg-~ 444 (787)
+|+..|.+|.|.+.+ ++|+|++.|++ |.+|+..+ | +.++++-++ ...+.++.|+|-. .
T Consensus 251 ~H~~GilslsWc~~D~~lllSsgkD~~-ii~wN~~t-------g----------Evl~~~p~~--~nW~fdv~w~pr~P~ 310 (1049)
T KOG0307|consen 251 GHQRGILSLSWCPQDPRLLLSSGKDNR-IICWNPNT-------G----------EVLGELPAQ--GNWCFDVQWCPRNPS 310 (1049)
T ss_pred ccccceeeeccCCCCchhhhcccCCCC-eeEecCCC-------c----------eEeeecCCC--CcceeeeeecCCCcc
Confidence 999999999999977 89999999776 88999754 3 577887542 3469999999865 5
Q ss_pred EEEEEeCCCeEEEEeCCCC
Q 003907 445 WIAIVSSKGTCHVFVLSPF 463 (787)
Q Consensus 445 ~LAs~S~dgTVhIwdl~~~ 463 (787)
.+|+++.||.|-||.+...
T Consensus 311 ~~A~asfdgkI~I~sl~~~ 329 (1049)
T KOG0307|consen 311 VMAAASFDGKISIYSLQGT 329 (1049)
T ss_pred hhhhheeccceeeeeeecC
Confidence 8999999999999999754
No 113
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.34 E-value=2.6e-11 Score=133.51 Aligned_cols=261 Identities=16% Similarity=0.164 Sum_probs=166.0
Q ss_pred CeEEEEEecCcEEEEEccCCCceeEe---e-eeccCcEEEEEEecCCCCCCCCCCccccCcEEEEEEcCCCCCCCCCCCc
Q 003907 75 KQVLLLGYQNGFQVLDVEDASNFNEL---V-SKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNR 150 (787)
Q Consensus 75 ~~vL~lG~~~G~qVWdv~~~~~~~el---l-s~~dg~V~~v~~lP~P~~~~~~d~F~~srpLLavV~~d~~~~~~~~~~~ 150 (787)
-+-+-+|.+++++|||+...++-.-+ - -.+|.-++.++++|+ .|.|| |+|+
T Consensus 431 trhVyTgGkgcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pd------------grtLi--vGGe----------- 485 (705)
T KOG0639|consen 431 TRHVYTGGKGCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPD------------GRTLI--VGGE----------- 485 (705)
T ss_pred cceeEecCCCeEEEeeccCCCCCCccccccccCcccceeeeEecCC------------CceEE--eccc-----------
Confidence 44566777899999999765432211 1 125667888888875 34454 3432
Q ss_pred CCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCC---cEEEEEecC--CeE-EEEeCCeEEEEECCCCcee
Q 003907 151 SHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRS---SVCMVRCSP--RIV-AVGLATQIYCFDALTLENK 224 (787)
Q Consensus 151 ~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~v~tL~f~s---~V~sV~~s~--~~L-aV~~~~~I~iwD~~T~e~l 224 (787)
..+|.||||..-+.....+..+ ..+++++|+ ++. +.+.++.|.|||+.+..+.
T Consensus 486 ---------------------astlsiWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~V 544 (705)
T KOG0639|consen 486 ---------------------ASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLV 544 (705)
T ss_pred ---------------------cceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceee
Confidence 1489999999877665555654 568888888 333 3456788999999998888
Q ss_pred EEEEecCCcccCCCCccccccccceeEEcc--ceEEEecCCceecCcceeccccCCCCCcCCCcCCCCCceeEeeehhhh
Q 003907 225 FSVLTYPVPQLAGQGAVGINVGYGPMAVGP--RWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHS 302 (787)
Q Consensus 225 ~tl~t~p~p~~~~~~~~~~~~~~~~lAlsp--r~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~sp~~g~lva~~a~d~s 302 (787)
.++.+|+. |...+.+++ .-|=.++-+ ....+|+..+..
T Consensus 545 rqfqGhtD-------------GascIdis~dGtklWTGGlD-----ntvRcWDlregr---------------------- 584 (705)
T KOG0639|consen 545 RQFQGHTD-------------GASCIDISKDGTKLWTGGLD-----NTVRCWDLREGR---------------------- 584 (705)
T ss_pred ecccCCCC-------------CceeEEecCCCceeecCCCc-----cceeehhhhhhh----------------------
Confidence 88888876 233455543 112122211 112345543320
Q ss_pred hhhhcccceeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCC
Q 003907 303 KQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGT 382 (787)
Q Consensus 303 k~la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~v~~~~aH~~pIsaLaFSpdG~ 382 (787)
++.+ ..|+... . .-.-..+.+| ++.+...+.|.|-... +....++.-|++-|.+|.|.+-|+
T Consensus 585 -qlqq---hdF~SQI---f----SLg~cP~~dW------lavGMens~vevlh~s-kp~kyqlhlheScVLSlKFa~cGk 646 (705)
T KOG0639|consen 585 -QLQQ---HDFSSQI---F----SLGYCPTGDW------LAVGMENSNVEVLHTS-KPEKYQLHLHESCVLSLKFAYCGK 646 (705)
T ss_pred -hhhh---hhhhhhh---e----ecccCCCccc------eeeecccCcEEEEecC-CccceeecccccEEEEEEecccCc
Confidence 0000 0000000 0 0000111223 2345667777776654 344577888999999999999999
Q ss_pred EEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEeC
Q 003907 383 LLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVL 460 (787)
Q Consensus 383 lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl 460 (787)
++++.+. +..++.|.+ |. | ..+++.. ....|.++..|-|.++|++||.|....||.+
T Consensus 647 wfvStGk-DnlLnawrt-Py------G----------asiFqsk---E~SsVlsCDIS~ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 647 WFVSTGK-DNLLNAWRT-PY------G----------ASIFQSK---ESSSVLSCDISFDDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred eeeecCc-hhhhhhccC-cc------c----------cceeecc---ccCcceeeeeccCceEEEecCCCcceEEEEE
Confidence 9999998 557999997 42 4 3555554 2356999999999999999999998888875
No 114
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.33 E-value=1.1e-11 Score=142.40 Aligned_cols=224 Identities=15% Similarity=0.221 Sum_probs=149.5
Q ss_pred CeEEEEEecCc-EEEEEccCC--CceeEeeeeccCcEEEEEEecCCCCCCCCCCccccCcEEEEEEcCCCCCCCCCCCcC
Q 003907 75 KQVLLLGYQNG-FQVLDVEDA--SNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRS 151 (787)
Q Consensus 75 ~~vL~lG~~~G-~qVWdv~~~--~~~~ells~~dg~V~~v~~lP~P~~~~~~d~F~~srpLLavV~~d~~~~~~~~~~~~ 151 (787)
.++|+++..+| +-|||+... .....++..|.-.|..+-|.+ ..|-+++ +|+ |
T Consensus 100 ~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~-------------tep~ili-SGS--------Q--- 154 (839)
T KOG0269|consen 100 SNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHS-------------TEPNILI-SGS--------Q--- 154 (839)
T ss_pred hhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeecc-------------CCccEEE-ecC--------C---
Confidence 57999999999 899999663 333446778888899988764 3455544 331 2
Q ss_pred CCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCC-cEEEEEecC---CeEEEEeCC-eEEEEECCCCce-eE
Q 003907 152 HLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRS-SVCMVRCSP---RIVAVGLAT-QIYCFDALTLEN-KF 225 (787)
Q Consensus 152 ~~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~v~tL~f~s-~V~sV~~s~---~~LaV~~~~-~I~iwD~~T~e~-l~ 225 (787)
+++|++||++..+-+.++...+ .|++|.|++ ..++.+.++ .+.+||++..++ ..
T Consensus 155 --------------------Dg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~ 214 (839)
T KOG0269|consen 155 --------------------DGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEK 214 (839)
T ss_pred --------------------CceEEEEeeecccccccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHH
Confidence 3799999999988877776654 899999998 567777664 699999875442 22
Q ss_pred EEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCcceeccccCCCCCcCCCcCCCCCceeEeeehhhhhhh
Q 003907 226 SVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQF 305 (787)
Q Consensus 226 tl~t~p~p~~~~~~~~~~~~~~~~lAlspr~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~sp~~g~lva~~a~d~sk~l 305 (787)
.+..|..| .-.+.+.|
T Consensus 215 k~~AH~Gp-------------V~c~nwhP--------------------------------------------------- 230 (839)
T KOG0269|consen 215 KLTAHNGP-------------VLCLNWHP--------------------------------------------------- 230 (839)
T ss_pred HhhcccCc-------------eEEEeecC---------------------------------------------------
Confidence 23333322 11223333
Q ss_pred hcccceeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECCCCcEEEEeccC-CCCeEEEEECCCCC-E
Q 003907 306 AAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAH-TSPISALCFDPSGT-L 383 (787)
Q Consensus 306 a~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~v~~~~aH-~~pIsaLaFSpdG~-l 383 (787)
++.-+++++.|++|+|||..+.+.-..+.-| ..||.+|+|-|.-+ .
T Consensus 231 --------------------------------nr~~lATGGRDK~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~h 278 (839)
T KOG0269|consen 231 --------------------------------NREWLATGGRDKMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARSYH 278 (839)
T ss_pred --------------------------------CCceeeecCCCccEEEEeccCCCccceeEEeecceeeeeeeccCccch
Confidence 1111234456889999999876533222223 46999999999754 6
Q ss_pred EEEEEc-CCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEcc-CCCEEEEEeCCCeEEE
Q 003907 384 LVTASV-YGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSH-YSQWIAIVSSKGTCHV 457 (787)
Q Consensus 384 LATaS~-dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSp-Dg~~LAs~S~dgTVhI 457 (787)
|||+|. +++.|+|||++.-+ .+-..+.. +...++.|+|-. |-..|.+++.|+||..
T Consensus 279 LAtcsmv~dtsV~VWDvrRPY----------------IP~~t~~e--H~~~vt~i~W~~~d~~~l~s~sKD~tv~q 336 (839)
T KOG0269|consen 279 LATCSMVVDTSVHVWDVRRPY----------------IPYATFLE--HTDSVTGIAWDSGDRINLWSCSKDGTVLQ 336 (839)
T ss_pred hhhhhccccceEEEEeecccc----------------ccceeeec--cCccccceeccCCCceeeEeecCccHHHH
Confidence 888764 57889999995311 12222321 334688899964 7778999999998743
No 115
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.33 E-value=1.3e-10 Score=132.40 Aligned_cols=214 Identities=15% Similarity=0.138 Sum_probs=154.1
Q ss_pred EEEEEecCc-EEEEEccCCCceeEeeeeccCcEEEEEEecCCCCCCCCCCccccCcEEEEEEcCCCCCCCCCCCcCCCCC
Q 003907 77 VLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGG 155 (787)
Q Consensus 77 vL~lG~~~G-~qVWdv~~~~~~~ells~~dg~V~~v~~lP~P~~~~~~d~F~~srpLLavV~~d~~~~~~~~~~~~~~~~ 155 (787)
.|++|..++ +.||.+.. .+-..+|.+|...|+++..... +.| ++
T Consensus 73 ~l~~g~~D~~i~v~~~~~-~~P~~~LkgH~snVC~ls~~~~--------------~~~--iS------------------ 117 (745)
T KOG0301|consen 73 RLVVGGMDTTIIVFKLSQ-AEPLYTLKGHKSNVCSLSIGED--------------GTL--IS------------------ 117 (745)
T ss_pred ceEeecccceEEEEecCC-CCchhhhhccccceeeeecCCc--------------Cce--Ee------------------
Confidence 466677766 78999854 4456788999999999986521 122 34
Q ss_pred cccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCC-CcEEEEEecC-CeEEEE-eCCeEEEEECCCCceeEEEEecCC
Q 003907 156 VRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFR-SSVCMVRCSP-RIVAVG-LATQIYCFDALTLENKFSVLTYPV 232 (787)
Q Consensus 156 ~r~g~~~~~~~~~~~~p~tVrlWdlktg~~v~tL~f~-s~V~sV~~s~-~~LaV~-~~~~I~iwD~~T~e~l~tl~t~p~ 232 (787)
|+|| +|+++|-. +++..+++.| .+|++|..=+ +.+++| .|..|++|.. ++++.++.+|..
T Consensus 118 ---gSWD----------~TakvW~~--~~l~~~l~gH~asVWAv~~l~e~~~vTgsaDKtIklWk~--~~~l~tf~gHtD 180 (745)
T KOG0301|consen 118 ---GSWD----------STAKVWRI--GELVYSLQGHTASVWAVASLPENTYVTGSADKTIKLWKG--GTLLKTFSGHTD 180 (745)
T ss_pred ---cccc----------cceEEecc--hhhhcccCCcchheeeeeecCCCcEEeccCcceeeeccC--Cchhhhhccchh
Confidence 3454 69999964 6777778765 5899988755 555554 4567999986 556777777654
Q ss_pred cccCCCCccccccccceeEEccceEEEecCCceecCcceeccccCCCCCcCCCcCCCCCceeEeeehhhhhhhhccccee
Q 003907 233 PQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKT 312 (787)
Q Consensus 233 p~~~~~~~~~~~~~~~~lAlspr~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~sp~~g~lva~~a~d~sk~la~G~~kt 312 (787)
- + |-||.-+..
T Consensus 181 ~-------------V-------RgL~vl~~~------------------------------------------------- 191 (745)
T KOG0301|consen 181 C-------------V-------RGLAVLDDS------------------------------------------------- 191 (745)
T ss_pred h-------------e-------eeeEEecCC-------------------------------------------------
Confidence 1 1 223332210
Q ss_pred ecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCC
Q 003907 313 LSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGN 392 (787)
Q Consensus 313 ls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~ 392 (787)
.+.++++||.|+.||+ +++++..+.+|+.-|.+++...++..++|+++|++
T Consensus 192 ----------------------------~flScsNDg~Ir~w~~-~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrt 242 (745)
T KOG0301|consen 192 ----------------------------HFLSCSNDGSIRLWDL-DGEVLLEMHGHTNFVYSISMALSDGLIVSTGEDRT 242 (745)
T ss_pred ----------------------------CeEeecCCceEEEEec-cCceeeeeeccceEEEEEEecCCCCeEEEecCCce
Confidence 1224578999999999 78899999999999999998888899999999765
Q ss_pred EEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEeCCCC
Q 003907 393 NINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPF 463 (787)
Q Consensus 393 ~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~~~ 463 (787)
+|||+.. .+...+.-- .-.||++.+=++|. |++|++||.|+||...+.
T Consensus 243 -lriW~~~-------------------e~~q~I~lP--ttsiWsa~~L~NgD-Ivvg~SDG~VrVfT~~k~ 290 (745)
T KOG0301|consen 243 -LRIWKKD-------------------ECVQVITLP--TTSIWSAKVLLNGD-IVVGGSDGRVRVFTVDKD 290 (745)
T ss_pred -EEEeecC-------------------ceEEEEecC--ccceEEEEEeeCCC-EEEeccCceEEEEEeccc
Confidence 9999973 234444311 12599999988887 678889999999998754
No 116
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.32 E-value=6e-10 Score=117.02 Aligned_cols=254 Identities=15% Similarity=0.181 Sum_probs=164.0
Q ss_pred CCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCce-eEeeeeccCcEEEEEEecCCCCCCCCCCccccCc
Q 003907 54 DLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNF-NELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHP 131 (787)
Q Consensus 54 ~~~~~v~wa~Fd~l~~~~~~~~~vL~lG~~~G-~qVWdv~~~~~~-~ells~~dg~V~~v~~lP~P~~~~~~d~F~~srp 131 (787)
...|.|.-..|-. ....+|+.|+.+| +|+|+++..+.. -+....++|||.++.+.-+ ..
T Consensus 25 pP~DsIS~l~FSP------~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~Wsdd-------------gs 85 (347)
T KOG0647|consen 25 PPEDSISALAFSP------QADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDD-------------GS 85 (347)
T ss_pred CcccchheeEecc------ccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccC-------------Cc
Confidence 3557788888864 1345777787766 999999886432 3345567899999998832 22
Q ss_pred EEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCCcEEEEEecC----CeEEE
Q 003907 132 FLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRSSVCMVRCSP----RIVAV 207 (787)
Q Consensus 132 LLavV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~v~tL~f~s~V~sV~~s~----~~LaV 207 (787)
.+++.++ ++.+++|||.+++....-.+..+|..++|=+ ..|++
T Consensus 86 kVf~g~~---------------------------------Dk~~k~wDL~S~Q~~~v~~Hd~pvkt~~wv~~~~~~cl~T 132 (347)
T KOG0647|consen 86 KVFSGGC---------------------------------DKQAKLWDLASGQVSQVAAHDAPVKTCHWVPGMNYQCLVT 132 (347)
T ss_pred eEEeecc---------------------------------CCceEEEEccCCCeeeeeecccceeEEEEecCCCcceeEe
Confidence 5544222 3579999999998777667778999998854 46677
Q ss_pred Ee-CCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCcceeccccCCCCCcCCCc
Q 003907 208 GL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPST 286 (787)
Q Consensus 208 ~~-~~~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~~~~~lAlspr~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~ 286 (787)
|. |.+|+.||.+.-..+.++.- |+. .|+
T Consensus 133 GSWDKTlKfWD~R~~~pv~t~~L---PeR----------------------vYa-------------------------- 161 (347)
T KOG0647|consen 133 GSWDKTLKFWDTRSSNPVATLQL---PER----------------------VYA-------------------------- 161 (347)
T ss_pred cccccceeecccCCCCeeeeeec---cce----------------------eee--------------------------
Confidence 65 67899999887665555532 210 011
Q ss_pred CCCCCceeEeeehhhhhhhhcccceeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECCCCcEEEEec
Q 003907 287 SPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFK 366 (787)
Q Consensus 287 sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~v~~~~ 366 (787)
+|....+ .+.+..+..|.+|+++++. .+++
T Consensus 162 ------------~Dv~~pm------------------------------------~vVata~r~i~vynL~n~~--te~k 191 (347)
T KOG0647|consen 162 ------------ADVLYPM------------------------------------AVVATAERHIAVYNLENPP--TEFK 191 (347)
T ss_pred ------------hhccCce------------------------------------eEEEecCCcEEEEEcCCCc--chhh
Confidence 1100000 0011234567778876643 3455
Q ss_pred cCCCC----eEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccc-----cccEEEE
Q 003907 367 AHTSP----ISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGIT-----SATIQDI 437 (787)
Q Consensus 367 aH~~p----IsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~-----~a~I~sl 437 (787)
.|++| +.||+.-+|....|-||.+|+ +-|..+.+. . +...-.++.+|-.. ...|.+|
T Consensus 192 ~~~SpLk~Q~R~va~f~d~~~~alGsiEGr-v~iq~id~~-------~------~~~nFtFkCHR~~~~~~~~VYaVNsi 257 (347)
T KOG0647|consen 192 RIESPLKWQTRCVACFQDKDGFALGSIEGR-VAIQYIDDP-------N------PKDNFTFKCHRSTNSVNDDVYAVNSI 257 (347)
T ss_pred hhcCcccceeeEEEEEecCCceEeeeecce-EEEEecCCC-------C------ccCceeEEEeccCCCCCCceEEecce
Confidence 55554 568888788777789999897 778887541 0 01123455555211 1247899
Q ss_pred EEccCCCEEEEEeCCCeEEEEeCCCCCCccccccccC
Q 003907 438 CFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQTLSS 474 (787)
Q Consensus 438 aFSpDg~~LAs~S~dgTVhIwdl~~~gg~~~~~~H~~ 474 (787)
+|.|.-..|++++.|||..+||-+..........|..
T Consensus 258 ~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~q 294 (347)
T KOG0647|consen 258 AFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSETHPQ 294 (347)
T ss_pred EeecccceEEEecCCceEEEecchhhhhhhccCcCCC
Confidence 9999999999999999999999765444444444543
No 117
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.31 E-value=1.1e-09 Score=110.94 Aligned_cols=99 Identities=21% Similarity=0.313 Sum_probs=82.2
Q ss_pred cccCCCceEEEEECCCCcEEEEecc--C-----CCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCcccc
Q 003907 343 ADMDNAGIVVVKDFVTRAIISQFKA--H-----TSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDW 415 (787)
Q Consensus 343 ~s~~~dG~V~IwDl~s~~~v~~~~a--H-----~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~ 415 (787)
+++++|.+|+.||++-..++.++.. | .+.|.+++.+|.|++||++-.| ....+||++- |
T Consensus 198 ~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~d-ssc~lydirg-------~------ 263 (350)
T KOG0641|consen 198 ASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHAD-SSCMLYDIRG-------G------ 263 (350)
T ss_pred EccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCC-CceEEEEeeC-------C------
Confidence 3567899999999998888887642 3 3579999999999999999884 4589999952 2
Q ss_pred CCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEeCC
Q 003907 416 NSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLS 461 (787)
Q Consensus 416 ~~s~~~l~~l~rG~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~ 461 (787)
+.+..++- +.+.|.++.|||-..||.++|.|..|++=|+.
T Consensus 264 ----r~iq~f~p--hsadir~vrfsp~a~yllt~syd~~ikltdlq 303 (350)
T KOG0641|consen 264 ----RMIQRFHP--HSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQ 303 (350)
T ss_pred ----ceeeeeCC--CccceeEEEeCCCceEEEEecccceEEEeecc
Confidence 56666653 56789999999999999999999999999886
No 118
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.30 E-value=5.2e-11 Score=128.82 Aligned_cols=241 Identities=14% Similarity=0.147 Sum_probs=152.7
Q ss_pred CCCCCCCcEEEEEEeeccCCCCCCCeEEEEEecCcEEEEEccCCCceeEeeeec-cCcEEEEEEecCCCCCCCCCCcccc
Q 003907 51 ASEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNGFQVLDVEDASNFNELVSKR-DGPVSFLQMQPFPVKDDGCEGFRKL 129 (787)
Q Consensus 51 ~~~~~~~~v~wa~Fd~l~~~~~~~~~vL~lG~~~G~qVWdv~~~~~~~ells~~-dg~V~~v~~lP~P~~~~~~d~F~~s 129 (787)
..++|...|.+..|- +.++.+|++|.+.-+.+||++ +|+++..+... .-.|.++.+.|+. |+
T Consensus 264 tlvgh~~~V~yi~wS------PDdryLlaCg~~e~~~lwDv~-tgd~~~~y~~~~~~S~~sc~W~pDg--------~~-- 326 (519)
T KOG0293|consen 264 TLVGHSQPVSYIMWS------PDDRYLLACGFDEVLSLWDVD-TGDLRHLYPSGLGFSVSSCAWCPDG--------FR-- 326 (519)
T ss_pred eeecccCceEEEEEC------CCCCeEEecCchHheeeccCC-cchhhhhcccCcCCCcceeEEccCC--------ce--
Confidence 467788999999995 336888888888889999996 46677766544 5678999999863 32
Q ss_pred CcEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCC--CcEEEEEecC---Ce
Q 003907 130 HPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFR--SSVCMVRCSP---RI 204 (787)
Q Consensus 130 rpLLavV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~v~tL~f~--s~V~sV~~s~---~~ 204 (787)
+ |+|. .++++.-||+. |+.....+.- ..|+++++.. .+
T Consensus 327 --~---V~Gs-------------------------------~dr~i~~wdlD-gn~~~~W~gvr~~~v~dlait~Dgk~v 369 (519)
T KOG0293|consen 327 --F---VTGS-------------------------------PDRTIIMWDLD-GNILGNWEGVRDPKVHDLAITYDGKYV 369 (519)
T ss_pred --e---EecC-------------------------------CCCcEEEecCC-cchhhcccccccceeEEEEEcCCCcEE
Confidence 2 3331 23789999985 5555555543 3789999876 46
Q ss_pred EEEEeCCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEcc-ceEEEecCCceecCcceeccccCCCCCcC
Q 003907 205 VAVGLATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP-RWLAYASNTLLLSNSGRLSPQNLTPSGVS 283 (787)
Q Consensus 205 LaV~~~~~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~~~~~lAlsp-r~LAyas~~~~l~~~g~~s~q~lt~~~~s 283 (787)
++++.+..|.+|+..+.....-+.++. | ...+.+|- .-+|... +...+...|+.-.+
T Consensus 370 l~v~~d~~i~l~~~e~~~dr~lise~~-~-------------its~~iS~d~k~~Lvn----L~~qei~LWDl~e~---- 427 (519)
T KOG0293|consen 370 LLVTVDKKIRLYNREARVDRGLISEEQ-P-------------ITSFSISKDGKLALVN----LQDQEIHLWDLEEN---- 427 (519)
T ss_pred EEEecccceeeechhhhhhhccccccC-c-------------eeEEEEcCCCcEEEEE----cccCeeEEeecchh----
Confidence 677778889999988765543333321 1 23444543 1111111 01112222332211
Q ss_pred CCcCCCCCceeEeeehhhhhhhhcccceeecccccccCCCCCCCCcccCCccc-cccccccccCCCceEEEEECCCCcEE
Q 003907 284 PSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWK-VGRHAGADMDNAGIVVVKDFVTRAII 362 (787)
Q Consensus 284 ~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~-~~~~~~~s~~~dG~V~IwDl~s~~~v 362 (787)
.+ ++++.++-+..+ .-. +++. .+..-+++++.|+.|+||+..+++++
T Consensus 428 --------~l----------------v~kY~Ghkq~~f-------iIr-SCFgg~~~~fiaSGSED~kvyIWhr~sgkll 475 (519)
T KOG0293|consen 428 --------KL----------------VRKYFGHKQGHF-------IIR-SCFGGGNDKFIASGSEDSKVYIWHRISGKLL 475 (519)
T ss_pred --------hH----------------HHHhhcccccce-------EEE-eccCCCCcceEEecCCCceEEEEEccCCcee
Confidence 00 011111110000 000 0011 11123568899999999999999999
Q ss_pred EEeccCCCCeEEEEECC-CCCEEEEEEcCCCEEEEEeCC
Q 003907 363 SQFKAHTSPISALCFDP-SGTLLVTASVYGNNINIFRIM 400 (787)
Q Consensus 363 ~~~~aH~~pIsaLaFSp-dG~lLATaS~dG~~IrVWdi~ 400 (787)
..+.+|...|+|++++| +-.+||+||+||+ ||||-..
T Consensus 476 ~~LsGHs~~vNcVswNP~~p~m~ASasDDgt-IRIWg~~ 513 (519)
T KOG0293|consen 476 AVLSGHSKTVNCVSWNPADPEMFASASDDGT-IRIWGPS 513 (519)
T ss_pred EeecCCcceeeEEecCCCCHHHhhccCCCCe-EEEecCC
Confidence 99999999999999999 4568999999776 9999874
No 119
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.30 E-value=4.9e-10 Score=122.13 Aligned_cols=241 Identities=17% Similarity=0.223 Sum_probs=163.4
Q ss_pred CCCCCCcEEEEEEeeccCCCCCCCeEEEEEecC-cEEEEEccCCCceeEeeeeccCcEEEEEEecCCCCCCCCCCccccC
Q 003907 52 SEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQN-GFQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLH 130 (787)
Q Consensus 52 ~~~~~~~v~wa~Fd~l~~~~~~~~~vL~lG~~~-G~qVWdv~~~~~~~ells~~dg~V~~v~~lP~P~~~~~~d~F~~sr 130 (787)
..+|.-.|+|+.|.+. ...++.+..+ -|+||.+... ....++.-|+++|..+..-|+. .
T Consensus 257 ~~Gh~kki~~v~~~~~-------~~~v~~aSad~~i~vws~~~~-s~~~~~~~h~~~V~~ls~h~tg-----------e- 316 (506)
T KOG0289|consen 257 LKGHTKKITSVKFHKD-------LDTVITASADEIIRVWSVPLS-SEPTSSRPHEEPVTGLSLHPTG-----------E- 316 (506)
T ss_pred ccCcceEEEEEEeccc-------hhheeecCCcceEEeeccccc-cCccccccccccceeeeeccCC-----------c-
Confidence 5677888999999862 2244555554 5999999554 4556777899999999988753 2
Q ss_pred cEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCC-C--cEEEEEecCC--eE
Q 003907 131 PFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFR-S--SVCMVRCSPR--IV 205 (787)
Q Consensus 131 pLLavV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~v~tL~f~-s--~V~sV~~s~~--~L 205 (787)
+|+..+ .+++..|.|.++|..+...... + .+.+..|.|+ ++
T Consensus 317 -YllsAs---------------------------------~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLif 362 (506)
T KOG0289|consen 317 -YLLSAS---------------------------------NDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIF 362 (506)
T ss_pred -EEEEec---------------------------------CCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEE
Confidence 554311 1368889999999988877664 3 4789999985 44
Q ss_pred EEEe-CCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCcceeccccCCCCCcCC
Q 003907 206 AVGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSP 284 (787)
Q Consensus 206 aV~~-~~~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~~~~~lAlspr~LAyas~~~~l~~~g~~s~q~lt~~~~s~ 284 (787)
+.+. +..|+|||+........+.+|..| . +-|+|+.+.
T Consensus 363 gtgt~d~~vkiwdlks~~~~a~Fpght~~-------------v-------k~i~FsENG--------------------- 401 (506)
T KOG0289|consen 363 GTGTPDGVVKIWDLKSQTNVAKFPGHTGP-------------V-------KAISFSENG--------------------- 401 (506)
T ss_pred eccCCCceEEEEEcCCccccccCCCCCCc-------------e-------eEEEeccCc---------------------
Confidence 4454 457999999877655555444433 1 223333321
Q ss_pred CcCCCCCceeEeeehhhhhhhhcccceeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECCCCcEEEE
Q 003907 285 STSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQ 364 (787)
Q Consensus 285 s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~v~~ 364 (787)
|+ .+.+..|+.|++||++..+...+
T Consensus 402 -------------------------------Y~------------------------Lat~add~~V~lwDLRKl~n~kt 426 (506)
T KOG0289|consen 402 -------------------------------YW------------------------LATAADDGSVKLWDLRKLKNFKT 426 (506)
T ss_pred -------------------------------eE------------------------EEEEecCCeEEEEEehhhcccce
Confidence 11 12345678899999998887777
Q ss_pred eccC-CCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCC
Q 003907 365 FKAH-TSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYS 443 (787)
Q Consensus 365 ~~aH-~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg 443 (787)
|.-- ..+|.+++|+++|++|+.++. .++||-.... .-.| .++.++. .+.+....+.|..+.
T Consensus 427 ~~l~~~~~v~s~~fD~SGt~L~~~g~---~l~Vy~~~k~---------~k~W----~~~~~~~--~~sg~st~v~Fg~~a 488 (506)
T KOG0289|consen 427 IQLDEKKEVNSLSFDQSGTYLGIAGS---DLQVYICKKK---------TKSW----TEIKELA--DHSGLSTGVRFGEHA 488 (506)
T ss_pred eeccccccceeEEEcCCCCeEEeecc---eeEEEEEecc---------cccc----eeeehhh--hcccccceeeecccc
Confidence 7643 348999999999999999855 4677765320 0001 2232322 122356789999999
Q ss_pred CEEEEEeCCCeEEEEeC
Q 003907 444 QWIAIVSSKGTCHVFVL 460 (787)
Q Consensus 444 ~~LAs~S~dgTVhIwdl 460 (787)
++|+++|.|...+|+.+
T Consensus 489 q~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 489 QYLASTSMDAILRLYAL 505 (506)
T ss_pred eEEeeccchhheEEeec
Confidence 99999999999999875
No 120
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.30 E-value=1.4e-10 Score=122.12 Aligned_cols=248 Identities=18% Similarity=0.201 Sum_probs=159.5
Q ss_pred EEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCceeEeeeeccCcEEEEEEecCCCCCCCCCCccccCcEEEEEE
Q 003907 59 VTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVA 137 (787)
Q Consensus 59 v~wa~Fd~l~~~~~~~~~vL~lG~~~G-~qVWdv~~~~~~~ells~~dg~V~~v~~lP~P~~~~~~d~F~~srpLLavV~ 137 (787)
-..+.|++ -+..|++|..+| +-|||.... ....+++.|--||.++.++++ .| +|+..+
T Consensus 26 a~~~~Fs~-------~G~~lAvGc~nG~vvI~D~~T~-~iar~lsaH~~pi~sl~WS~d------------gr-~LltsS 84 (405)
T KOG1273|consen 26 AECCQFSR-------WGDYLAVGCANGRVVIYDFDTF-RIARMLSAHVRPITSLCWSRD------------GR-KLLTSS 84 (405)
T ss_pred cceEEecc-------CcceeeeeccCCcEEEEEcccc-chhhhhhccccceeEEEecCC------------CC-Eeeeec
Confidence 34566765 256999999999 999999754 477889999999999999974 23 343322
Q ss_pred cCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCCcEEEEEecC--CeEEE--EeCCeE
Q 003907 138 GEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRSSVCMVRCSP--RIVAV--GLATQI 213 (787)
Q Consensus 138 ~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~v~tL~f~s~V~sV~~s~--~~LaV--~~~~~I 213 (787)
.+..|.+||+..|.+++.++|+++|+.+.+.| +..++ -.+..-
T Consensus 85 ---------------------------------~D~si~lwDl~~gs~l~rirf~spv~~~q~hp~k~n~~va~~~~~sp 131 (405)
T KOG1273|consen 85 ---------------------------------RDWSIKLWDLLKGSPLKRIRFDSPVWGAQWHPRKRNKCVATIMEESP 131 (405)
T ss_pred ---------------------------------CCceeEEEeccCCCceeEEEccCccceeeeccccCCeEEEEEecCCc
Confidence 23589999999999999999999999999977 22222 223333
Q ss_pred EEEECCCCceeEEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCcceeccccCCCCCcCCCcCCCCCce
Q 003907 214 YCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSL 293 (787)
Q Consensus 214 ~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~~~~~lAlspr~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~sp~~g~l 293 (787)
++-+..+. .+++ |+..++. .. ..
T Consensus 132 ~vi~~s~~--~h~~-----------------------------Lp~d~d~-------dl------------n~------- 154 (405)
T KOG1273|consen 132 VVIDFSDP--KHSV-----------------------------LPKDDDG-------DL------------NS------- 154 (405)
T ss_pred EEEEecCC--ceee-----------------------------ccCCCcc-------cc------------cc-------
Confidence 33332221 1111 1111100 00 00
Q ss_pred eEeeehhhhhhhhcccceeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECCCCcEEEEeccCC-CCe
Q 003907 294 VARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHT-SPI 372 (787)
Q Consensus 294 va~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~v~~~~aH~-~pI 372 (787)
+++ ...+...+ ..+.++...|.+.|+|..+.++++.++--+ ..|
T Consensus 155 sas-------------------------------~~~fdr~g----~yIitGtsKGkllv~~a~t~e~vas~rits~~~I 199 (405)
T KOG1273|consen 155 SAS-------------------------------HGVFDRRG----KYIITGTSKGKLLVYDAETLECVASFRITSVQAI 199 (405)
T ss_pred ccc-------------------------------cccccCCC----CEEEEecCcceEEEEecchheeeeeeeechheee
Confidence 000 00011111 123356678999999999999999998766 889
Q ss_pred EEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCC
Q 003907 373 SALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSK 452 (787)
Q Consensus 373 saLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~LAs~S~d 452 (787)
..+-|+..|+.|+.-.. +++||+|++..--..+..| .....++++--.....-.+++||.||.|++++|..
T Consensus 200 K~I~~s~~g~~liiNts-DRvIR~ye~~di~~~~r~~--------e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~ 270 (405)
T KOG1273|consen 200 KQIIVSRKGRFLIINTS-DRVIRTYEISDIDDEGRDG--------EVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSAR 270 (405)
T ss_pred eEEEEeccCcEEEEecC-CceEEEEehhhhcccCccC--------CcChhHHHHHHHhhhhhhheeecCCccEEEecccc
Confidence 99999999999999888 7789999986311100001 11222333211112234689999999999998865
Q ss_pred -CeEEEEeCC
Q 003907 453 -GTCHVFVLS 461 (787)
Q Consensus 453 -gTVhIwdl~ 461 (787)
..+.||.-.
T Consensus 271 aHaLYIWE~~ 280 (405)
T KOG1273|consen 271 AHALYIWEKS 280 (405)
T ss_pred ceeEEEEecC
Confidence 468899743
No 121
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.30 E-value=7e-12 Score=131.76 Aligned_cols=226 Identities=18% Similarity=0.176 Sum_probs=150.6
Q ss_pred CCcccCCccccccccccccCCCceEEEEECCCCcEEEE--------eccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEe
Q 003907 327 SPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQ--------FKAHTSPISALCFDPSGTLLVTASVYGNNINIFR 398 (787)
Q Consensus 327 ~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~v~~--------~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWd 398 (787)
....|+|++.. +++++.||-|.|||..+++.... |--|+.+|.|++||.|..+|||++.||+ |+||.
T Consensus 217 EcA~FSPDgqy----LvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGk-IKvWr 291 (508)
T KOG0275|consen 217 ECARFSPDGQY----LVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGK-IKVWR 291 (508)
T ss_pred hheeeCCCCce----EeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCc-EEEEE
Confidence 33445555543 45788999999999999875544 3457889999999999999999999887 99999
Q ss_pred CCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEeCCCCCCccccccccCCCCC
Q 003907 399 IMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQTLSSQGGD 478 (787)
Q Consensus 399 i~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~~~gg~~~~~~H~~~~~~ 478 (787)
+.+ | .++.+|.|.++. -|+++.||.|+..|.++|.|.|++|--+...+....+++|++-+..
T Consensus 292 i~t-------G----------~ClRrFdrAHtk-Gvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~ 353 (508)
T KOG0275|consen 292 IET-------G----------QCLRRFDRAHTK-GVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNE 353 (508)
T ss_pred Eec-------c----------hHHHHhhhhhcc-CeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCccccccc
Confidence 976 4 578888776554 5999999999999999999999999999988888889999753322
Q ss_pred CcccCCCCCCccccCCCCCcCCcCCCCCceeecceeeEEecCCC----ccccccccccccCCccccccceeeeecccCcc
Q 003907 479 PYLFPVLSLPWWCTSSGISEQQCVLPPPPVTLSVVSRIKYSSFG----WLNTVSNASASSMGKVFVPSGAVAAVFHNSIA 554 (787)
Q Consensus 479 ~~~~~~~~~~~~~~~~~s~~q~~~~~p~~~~l~~v~~i~~~~~~----w~~~v~~~~~~a~~~~~~p~~~v~~~f~~~~~ 554 (787)
..+. +.++- + |..++.| |.+-.+. |...|...
T Consensus 354 a~ft--------------------~dG~~-i------isaSsDgtvkvW~~Ktte---------------C~~Tfk~~-- 389 (508)
T KOG0275|consen 354 ATFT--------------------DDGHH-I------ISASSDGTVKVWHGKTTE---------------CLSTFKPL-- 389 (508)
T ss_pred eEEc--------------------CCCCe-E------EEecCCccEEEecCcchh---------------hhhhccCC--
Confidence 2111 11221 1 1112222 4332211 11222111
Q ss_pred cccccc---ccccCccccEEEEcCCccEEEEecccCCCCCCCCCCCcccccccccccCCceeEeecccccceeeccC
Q 003907 555 HSSQHV---NSRTNSLEHLLVYTPSGYVVQHELLPSIGMGPSDDGSRIRAASLMCLQEDDLQVRVEPVQWWDVCRRS 628 (787)
Q Consensus 555 ~~~~~~---~~~~~~~~~LlV~s~~G~l~~y~l~p~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~r~~ 628 (787)
....++ +.-.++.+|+.|..-+-.+|+-++.-+. +..-.++-.| .-+-+.-.+.|+.+|--|-..
T Consensus 390 ~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qGQv-------VrsfsSGkRE--gGdFi~~~lSpkGewiYcigE 457 (508)
T KOG0275|consen 390 GTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQGQV-------VRSFSSGKRE--GGDFINAILSPKGEWIYCIGE 457 (508)
T ss_pred CCcccceeEEEcCCCCceEEEEcCCCeEEEEeccceE-------EeeeccCCcc--CCceEEEEecCCCcEEEEEcc
Confidence 001111 1122457899999999999999886542 1111111111 134677889999999999654
No 122
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.29 E-value=5.9e-10 Score=117.63 Aligned_cols=211 Identities=12% Similarity=0.097 Sum_probs=131.0
Q ss_pred CCEEEEEECCCCeEEEEEeC-CCcEEEEEecC-----CeEEEEeCCeEEEEECCCCceeEEEEecCCcccCCCCcccccc
Q 003907 172 PTAVRFYSFQSHCYEHVLRF-RSSVCMVRCSP-----RIVAVGLATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINV 245 (787)
Q Consensus 172 p~tVrlWdlktg~~v~tL~f-~s~V~sV~~s~-----~~LaV~~~~~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~ 245 (787)
+-+|+|||+++...+..|-. .+.|.++.|.+ .+|..+.+++|.+|++...++++++..|...
T Consensus 62 DetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~------------ 129 (362)
T KOG0294|consen 62 DETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQ------------ 129 (362)
T ss_pred CCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeecccccc------------
Confidence 36899999999988887754 46899999976 3455556678999999999999999987652
Q ss_pred ccceeEEcc-ceEE--EecCCceecCcceeccccCCCCCcCCCcCCCCCceeEeeehhhhhhhhcccceeecccccccCC
Q 003907 246 GYGPMAVGP-RWLA--YASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLP 322 (787)
Q Consensus 246 ~~~~lAlsp-r~LA--yas~~~~l~~~g~~s~q~lt~~~~s~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p 322 (787)
++-+++.| .-|| .+++..+ ..|...++.. +.+..|..+..
T Consensus 130 -Vt~lsiHPS~KLALsVg~D~~l------r~WNLV~Gr~--------------------------a~v~~L~~~at---- 172 (362)
T KOG0294|consen 130 -VTDLSIHPSGKLALSVGGDQVL------RTWNLVRGRV--------------------------AFVLNLKNKAT---- 172 (362)
T ss_pred -cceeEecCCCceEEEEcCCcee------eeehhhcCcc--------------------------ceeeccCCcce----
Confidence 34577777 3333 3444321 1122222100 00011111110
Q ss_pred CCCCCCcccCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCC
Q 003907 323 DGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPS 402 (787)
Q Consensus 323 ~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~ 402 (787)
.+.+++.+.. ........|-||.+.+-.+...+.- ...+.++.|-. +..|++|.+++ .|++||...
T Consensus 173 -----~v~w~~~Gd~-----F~v~~~~~i~i~q~d~A~v~~~i~~-~~r~l~~~~l~-~~~L~vG~d~~-~i~~~D~ds- 238 (362)
T KOG0294|consen 173 -----LVSWSPQGDH-----FVVSGRNKIDIYQLDNASVFREIEN-PKRILCATFLD-GSELLVGGDNE-WISLKDTDS- 238 (362)
T ss_pred -----eeEEcCCCCE-----EEEEeccEEEEEecccHhHhhhhhc-cccceeeeecC-CceEEEecCCc-eEEEeccCC-
Confidence 0111111110 0112356677888776554433322 14477888864 55677888755 599999742
Q ss_pred cccCCCCCCccccCCcceEEEEEecccccccEEEEEE--ccCCCEEEEEeCCCeEEEEeCCCC
Q 003907 403 CMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICF--SHYSQWIAIVSSKGTCHVFVLSPF 463 (787)
Q Consensus 403 ~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaF--SpDg~~LAs~S~dgTVhIwdl~~~ 463 (787)
+ .++..+. + |.++|.+|.+ .|++.+|+++|+||.|+|||++..
T Consensus 239 ------~----------~~~~~~~-A-H~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 239 ------D----------TPLTEFL-A-HENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDME 283 (362)
T ss_pred ------C----------ccceeee-c-chhheeeeEEEecCCceEEEEeccCceEEEEEcccc
Confidence 2 3555554 2 4467999984 578999999999999999999754
No 123
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.29 E-value=9.3e-11 Score=123.44 Aligned_cols=256 Identities=14% Similarity=0.184 Sum_probs=182.1
Q ss_pred CCCCcEEEEEEeeccCCCCCCCeEEEEEecCcE-EEEEccCCCceeEeeee--------ccCcEEEEEEecCCCCCCCCC
Q 003907 54 DLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNGF-QVLDVEDASNFNELVSK--------RDGPVSFLQMQPFPVKDDGCE 124 (787)
Q Consensus 54 ~~~~~v~wa~Fd~l~~~~~~~~~vL~lG~~~G~-qVWdv~~~~~~~ells~--------~dg~V~~v~~lP~P~~~~~~d 124 (787)
+.|..+-.|.|. .+++.|+.|+-+|| .|||.. +|++++-+.- +|.+|.|+.|.-+
T Consensus 211 g~KSh~EcA~FS-------PDgqyLvsgSvDGFiEVWny~-~GKlrKDLkYQAqd~fMMmd~aVlci~FSRD-------- 274 (508)
T KOG0275|consen 211 GQKSHVECARFS-------PDGQYLVSGSVDGFIEVWNYT-TGKLRKDLKYQAQDNFMMMDDAVLCISFSRD-------- 274 (508)
T ss_pred ccccchhheeeC-------CCCceEeeccccceeeeehhc-cchhhhhhhhhhhcceeecccceEEEeeccc--------
Confidence 344556666664 36899999999995 899994 5777665542 4578888877632
Q ss_pred CccccCcEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEe--CCCcEEEEEecC
Q 003907 125 GFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLR--FRSSVCMVRCSP 202 (787)
Q Consensus 125 ~F~~srpLLavV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~v~tL~--f~s~V~sV~~s~ 202 (787)
.-+||. |. -+++|++|-+.+|++++.++ +...|.++.|++
T Consensus 275 -----sEMlAs--Gs-------------------------------qDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSr 316 (508)
T KOG0275|consen 275 -----SEMLAS--GS-------------------------------QDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSR 316 (508)
T ss_pred -----HHHhhc--cC-------------------------------cCCcEEEEEEecchHHHHhhhhhccCeeEEEEcc
Confidence 125543 21 13689999999999999886 334899999987
Q ss_pred ---CeEEEEeCCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCcceeccccCCC
Q 003907 203 ---RIVAVGLATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTP 279 (787)
Q Consensus 203 ---~~LaV~~~~~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~~~~~lAlspr~LAyas~~~~l~~~g~~s~q~lt~ 279 (787)
++|..+.+..++|.-+..++++..+.+|..- + +... |..
T Consensus 317 D~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSy---------v----n~a~-------ft~------------------ 358 (508)
T KOG0275|consen 317 DNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSY---------V----NEAT-------FTD------------------ 358 (508)
T ss_pred CcchhhcccccceEEEeccccchhHHHhcCcccc---------c----cceE-------EcC------------------
Confidence 6788889999999999999999988876541 0 0011 111
Q ss_pred CCcCCCcCCCCCceeEeeehhhhhhhhcccceeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECCCC
Q 003907 280 SGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTR 359 (787)
Q Consensus 280 ~~~s~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~ 359 (787)
+|+ .+.+++.||+|+||+..+.
T Consensus 359 -------------------------------------------dG~---------------~iisaSsDgtvkvW~~Ktt 380 (508)
T KOG0275|consen 359 -------------------------------------------DGH---------------HIISASSDGTVKVWHGKTT 380 (508)
T ss_pred -------------------------------------------CCC---------------eEEEecCCccEEEecCcch
Confidence 010 1234578999999999999
Q ss_pred cEEEEecc--CCCCeEEEEECC-CCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEeccccc-ccEE
Q 003907 360 AIISQFKA--HTSPISALCFDP-SGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITS-ATIQ 435 (787)
Q Consensus 360 ~~v~~~~a--H~~pIsaLaFSp-dG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~-a~I~ 435 (787)
+++.+|+. .+-+|+.+-.=| +-..++.|.. .+++.|-++. | +-+..+..|... +...
T Consensus 381 eC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNr-sntv~imn~q--------G----------QvVrsfsSGkREgGdFi 441 (508)
T KOG0275|consen 381 ECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNR-SNTVYIMNMQ--------G----------QVVRSFSSGKREGGDFI 441 (508)
T ss_pred hhhhhccCCCCcccceeEEEcCCCCceEEEEcC-CCeEEEEecc--------c----------eEEeeeccCCccCCceE
Confidence 99999974 466888877766 4456777766 4457787773 3 344444443221 2466
Q ss_pred EEEEccCCCEEEEEeCCCeEEEEeCCCCCCccccccccCCCCC
Q 003907 436 DICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQTLSSQGGD 478 (787)
Q Consensus 436 slaFSpDg~~LAs~S~dgTVhIwdl~~~gg~~~~~~H~~~~~~ 478 (787)
+++.||.|.|+.+.+.|+.+.-|.+...+-+..+.-|...+.+
T Consensus 442 ~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~VhEkdvIG 484 (508)
T KOG0275|consen 442 NAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHEKDVIG 484 (508)
T ss_pred EEEecCCCcEEEEEccCcEEEEEEeecCceeeeeecccccccc
Confidence 7889999999999999999999999877777777666555544
No 124
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.29 E-value=4.5e-12 Score=144.44 Aligned_cols=175 Identities=17% Similarity=0.228 Sum_probs=132.8
Q ss_pred CEEEEEECCCCeEEEEEeCC-CcEEEEEecC--CeEEEEe-CCeEEEEECCCCceeEEEEecCCcccCCCCccccccccc
Q 003907 173 TAVRFYSFQSHCYEHVLRFR-SSVCMVRCSP--RIVAVGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYG 248 (787)
Q Consensus 173 ~tVrlWdlktg~~v~tL~f~-s~V~sV~~s~--~~LaV~~-~~~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~~~~ 248 (787)
.++-||..-.-..+..|..+ ++|.+|+|+. .+|+.|. ++.|++||+...+..++|.+|-.+ ..
T Consensus 50 ~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~-------------~~ 116 (825)
T KOG0267|consen 50 EKVNLWAIGKPNAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLN-------------IT 116 (825)
T ss_pred eeeccccccCCchhheeeccCCcceeeecCcchhhhcccccCCceeeeehhhhhhhhhhhccccC-------------cc
Confidence 46777877666666677765 5899999987 5666655 458999999999988888876553 01
Q ss_pred eeEEccceEEEecCCceecCcceeccccCCCCCcCCCcCCCCCceeEeeehhhhhhhhcccceeecccccccCCCCCCCC
Q 003907 249 PMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSP 328 (787)
Q Consensus 249 ~lAlspr~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~ 328 (787)
.++|.| |+- |
T Consensus 117 sv~f~P----~~~------------------------------------------------------~------------ 126 (825)
T KOG0267|consen 117 SVDFHP----YGE------------------------------------------------------F------------ 126 (825)
T ss_pred eeeecc----ceE------------------------------------------------------E------------
Confidence 223322 000 0
Q ss_pred cccCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCC
Q 003907 329 VSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGS 408 (787)
Q Consensus 329 ~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~ 408 (787)
.+.++.|+.+.+||.+...+...+++|...|..+.|+|+|++++.+.+ +..++|||+..
T Consensus 127 -------------~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~e-d~tvki~d~~a------- 185 (825)
T KOG0267|consen 127 -------------FASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGGE-DNTVKIWDLTA------- 185 (825)
T ss_pred -------------eccccccccceehhhhccCceeeecCCcceeEEEeecCCCceeeccCC-cceeeeecccc-------
Confidence 012456788999999999999999999999999999999999999998 66799999843
Q ss_pred CCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEeCCCC
Q 003907 409 GNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPF 463 (787)
Q Consensus 409 g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~~~ 463 (787)
| ..+.+|. + +...|+.+.|.|-.-.|+.||.|+|+++||++++
T Consensus 186 g----------k~~~ef~-~-~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletf 228 (825)
T KOG0267|consen 186 G----------KLSKEFK-S-HEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETF 228 (825)
T ss_pred c----------ccccccc-c-ccccccccccCchhhhhccCCCCceeeeecccee
Confidence 3 2344443 1 2356889999999999999999999999999954
No 125
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.28 E-value=1.3e-10 Score=122.28 Aligned_cols=247 Identities=13% Similarity=0.132 Sum_probs=151.3
Q ss_pred EEECCCCeEEEEE----e-CCCcEEEEEecC--CeEEEEe-CCeEEEEECCCCceeEEEEecCCcccCCCCccccccccc
Q 003907 177 FYSFQSHCYEHVL----R-FRSSVCMVRCSP--RIVAVGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYG 248 (787)
Q Consensus 177 lWdlktg~~v~tL----~-f~s~V~sV~~s~--~~LaV~~-~~~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~~~~ 248 (787)
+=.++++....++ . +...|+.|+... .++..+. +.+..||.+.+++++.+..+|... ++
T Consensus 128 vssFk~~t~~~~lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GS-------------VN 194 (481)
T KOG0300|consen 128 VSSFKDGTVKFRLVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHTGS-------------VN 194 (481)
T ss_pred eeeecCCceeEeehhhhcccccceeeehhhcCCcceeecccccceeEEeeccccceeeecccccc-------------ee
Confidence 3355666654444 3 346899998765 4566554 456999999999999998887652 57
Q ss_pred eeEEcc-c-eEEEecCCceecCcceeccccCCCCCcCCCcCCCCCc---eeEeeehhhhhhhhcccc----eeecccccc
Q 003907 249 PMAVGP-R-WLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSS---LVARYAMEHSKQFAAGLS----KTLSKYCQE 319 (787)
Q Consensus 249 ~lAlsp-r-~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~sp~~g~---lva~~a~d~sk~la~G~~----ktls~~~~~ 319 (787)
.+.|.+ + +++.++.+. + ...|+..-....+....|.+-+ -.-+ . |.-..-..+-. .++.--..+
T Consensus 195 sikfh~s~~L~lTaSGD~----t-aHIW~~av~~~vP~~~a~~~hSsEeE~e~-s-De~~~d~d~~~~sD~~tiRvPl~~ 267 (481)
T KOG0300|consen 195 SIKFHNSGLLLLTASGDE----T-AHIWKAAVNWEVPSNNAPSDHSSEEEEEH-S-DEHNRDTDSSEKSDGHTIRVPLMR 267 (481)
T ss_pred eEEeccccceEEEccCCc----c-hHHHHHhhcCcCCCCCCCCCCCchhhhhc-c-cccccccccccccCCceeeeeeee
Confidence 788888 3 344443321 0 1123321111111111111000 0000 0 00000000000 000000000
Q ss_pred cCCCCCCCCcccCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeC
Q 003907 320 LLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRI 399 (787)
Q Consensus 320 l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi 399 (787)
+ .+ ........+|-.++.+..+++-|.+..+||+++++++..+.+|...++.++-+|..++++|+|. ++++|+||.
T Consensus 268 l--tg-H~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSr-DtTFRLWDF 343 (481)
T KOG0300|consen 268 L--TG-HRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSR-DTTFRLWDF 343 (481)
T ss_pred e--ec-cccceEehhhhcCcceeeeeeccccceeeeeccCceeccccCcchhccccccCCcceEEEEecc-CceeEeccc
Confidence 0 01 1122333456666666678888999999999999999999999999999999999999999998 667999999
Q ss_pred CCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEeCCCCCCc
Q 003907 400 MPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGD 466 (787)
Q Consensus 400 ~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~~~gg~ 466 (787)
++.. ..+..|+ |+ ...|++..|.-|.+ ++++|+|.||+|||+.....+
T Consensus 344 ReaI----------------~sV~VFQ-GH-tdtVTS~vF~~dd~-vVSgSDDrTvKvWdLrNMRsp 391 (481)
T KOG0300|consen 344 REAI----------------QSVAVFQ-GH-TDTVTSVVFNTDDR-VVSGSDDRTVKVWDLRNMRSP 391 (481)
T ss_pred hhhc----------------ceeeeec-cc-ccceeEEEEecCCc-eeecCCCceEEEeeeccccCc
Confidence 6521 2344454 54 46799999999875 789999999999999876554
No 126
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.27 E-value=1.9e-10 Score=126.15 Aligned_cols=218 Identities=17% Similarity=0.198 Sum_probs=148.1
Q ss_pred CCCeEEEEEecCc-EEEEEccCCCceeEeeeeccCcEEEEEEecCCCCCCCCCCccccCcEEEEEEcCCCCCCCCCCCcC
Q 003907 73 VFKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRS 151 (787)
Q Consensus 73 ~~~~vL~lG~~~G-~qVWdv~~~~~~~ells~~dg~V~~v~~lP~P~~~~~~d~F~~srpLLavV~~d~~~~~~~~~~~~ 151 (787)
.++++|++|..+- |+|||+++ .+-...+..|-+.|..+.|--.+ + .|. +.+
T Consensus 212 ~Dgkylatgg~d~~v~Iw~~~t-~ehv~~~~ghr~~V~~L~fr~gt-----------~-~ly-s~s-------------- 263 (479)
T KOG0299|consen 212 SDGKYLATGGRDRHVQIWDCDT-LEHVKVFKGHRGAVSSLAFRKGT-----------S-ELY-SAS-------------- 263 (479)
T ss_pred CCCcEEEecCCCceEEEecCcc-cchhhcccccccceeeeeeecCc-----------c-cee-eee--------------
Confidence 4688999998875 89999965 55667789999999999876322 1 132 222
Q ss_pred CCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEe-CCCcEEEEEecC--CeEEEE-eCCeEEEEECCCCceeEEE
Q 003907 152 HLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLR-FRSSVCMVRCSP--RIVAVG-LATQIYCFDALTLENKFSV 227 (787)
Q Consensus 152 ~~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~v~tL~-f~s~V~sV~~s~--~~LaV~-~~~~I~iwD~~T~e~l~tl 227 (787)
.+++|++|++..-.++.++- +++.|.+|.... +.+.|+ -|.++++|++..-. ...+
T Consensus 264 -------------------~Drsvkvw~~~~~s~vetlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~ees-qlif 323 (479)
T KOG0299|consen 264 -------------------ADRSVKVWSIDQLSYVETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEES-QLIF 323 (479)
T ss_pred -------------------cCCceEEEehhHhHHHHHHhCCccceeeechhcccceEEeccccceeEEEeccccc-eeee
Confidence 24789999999999988885 457899998755 555566 46789999983211 0111
Q ss_pred EecCCcccCCCCccccccccceeEEccceEEEecCCceecCcceeccccCCCCCcCCCcCCCCCceeEeeehhhhhhhhc
Q 003907 228 LTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAA 307 (787)
Q Consensus 228 ~t~p~p~~~~~~~~~~~~~~~~lAlspr~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~sp~~g~lva~~a~d~sk~la~ 307 (787)
..+.. ++..+||-.+.
T Consensus 324 rg~~~--------------------sidcv~~In~~-------------------------------------------- 339 (479)
T KOG0299|consen 324 RGGEG--------------------SIDCVAFINDE-------------------------------------------- 339 (479)
T ss_pred eCCCC--------------------CeeeEEEeccc--------------------------------------------
Confidence 11100 00112222211
Q ss_pred ccceeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECCCCcEEEEec-cCC-----------CCeEEE
Q 003907 308 GLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFK-AHT-----------SPISAL 375 (787)
Q Consensus 308 G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~v~~~~-aH~-----------~pIsaL 375 (787)
-+.+++.+|.|.+|++..++++.+.+ +|. ..|++|
T Consensus 340 ---------------------------------HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsl 386 (479)
T KOG0299|consen 340 ---------------------------------HFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSL 386 (479)
T ss_pred ---------------------------------ceeeccCCceEEEeeecccCceeEeeccccccCCccccccccceeee
Confidence 01245678999999999988877664 441 278999
Q ss_pred EECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCC
Q 003907 376 CFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSK 452 (787)
Q Consensus 376 aFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~LAs~S~d 452 (787)
+.-|...++||+|.+|. ||+|.+.+.. .....++.+. -..-|.+|+|+++|++|+++-..
T Consensus 387 a~i~~sdL~asGS~~G~-vrLW~i~~g~-------------r~i~~l~~ls---~~GfVNsl~f~~sgk~ivagiGk 446 (479)
T KOG0299|consen 387 AVIPGSDLLASGSWSGC-VRLWKIEDGL-------------RAINLLYSLS---LVGFVNSLAFSNSGKRIVAGIGK 446 (479)
T ss_pred EecccCceEEecCCCCc-eEEEEecCCc-------------cccceeeecc---cccEEEEEEEccCCCEEEEeccc
Confidence 99999999999999785 9999996521 0123555554 23459999999999988777443
No 127
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.27 E-value=1.9e-10 Score=120.24 Aligned_cols=109 Identities=16% Similarity=0.278 Sum_probs=80.7
Q ss_pred CCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCC-EEEEEEcCCCEEEEEeCCCCcccCCCCC-CccccCC-cceEEE
Q 003907 347 NAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGT-LLVTASVYGNNINIFRIMPSCMRSGSGN-HKYDWNS-SHVHLY 423 (787)
Q Consensus 347 ~dG~V~IwDl~s~~~v~~~~aH~~pIsaLaFSpdG~-lLATaS~dG~~IrVWdi~~~~~~~~~g~-~~~~~~~-s~~~l~ 423 (787)
.+-.|++-|+.+|..-+++.+|.+.|.++.|+|... .|||||.||. ||+||++... |+ ...|... ..-+..
T Consensus 166 r~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~-irlWDiRras-----gcf~~lD~hn~k~~p~~ 239 (397)
T KOG4283|consen 166 RDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGA-IRLWDIRRAS-----GCFRVLDQHNTKRPPIL 239 (397)
T ss_pred CCCcEEEEeccCCcceeeeccccCceEEEEeccCceeEEEecCCCce-EEEEEeeccc-----ceeEEeecccCccCccc
Confidence 345789999999999999999999999999999766 5899999886 9999996421 10 0000000 001111
Q ss_pred EEecccccccEEEEEEccCCCEEEEEeCCCeEEEEeCCC
Q 003907 424 KLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSP 462 (787)
Q Consensus 424 ~l~rG~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~~ 462 (787)
+ .+-.+...|..+||+.||++|++++.|..+++|+...
T Consensus 240 ~-~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~ 277 (397)
T KOG4283|consen 240 K-TNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMES 277 (397)
T ss_pred c-ccccccceeeeeeecccchhhhhccCccceEEeeccc
Confidence 1 1223445799999999999999999999999999865
No 128
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.27 E-value=1.3e-10 Score=122.06 Aligned_cols=258 Identities=18% Similarity=0.275 Sum_probs=163.1
Q ss_pred CCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCC---CceeEe--------------eeeccCcEEEEEEecC
Q 003907 55 LKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDA---SNFNEL--------------VSKRDGPVSFLQMQPF 116 (787)
Q Consensus 55 ~~~~v~wa~Fd~l~~~~~~~~~vL~lG~~~G-~qVWdv~~~---~~~~el--------------ls~~dg~V~~v~~lP~ 116 (787)
||..+..+.|.. ++.++++|..+. |+|+|++-. .+.+++ |=.|-.+|..+.|-|.
T Consensus 111 HK~~cR~aafs~-------DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPr 183 (430)
T KOG0640|consen 111 HKSPCRAAAFSP-------DGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPR 183 (430)
T ss_pred cccceeeeeeCC-------CCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecch
Confidence 566667777753 588999999985 999999710 112222 2234456777777653
Q ss_pred CCCCCCCCCccccCcEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeE---EEEEeCCC
Q 003907 117 PVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCY---EHVLRFRS 193 (787)
Q Consensus 117 P~~~~~~d~F~~srpLLavV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~---v~tL~f~s 193 (787)
..+|+. +. .+++|+|+|+.+-.. .+.++--.
T Consensus 184 -------------e~ILiS--~s-------------------------------rD~tvKlFDfsK~saKrA~K~~qd~~ 217 (430)
T KOG0640|consen 184 -------------ETILIS--GS-------------------------------RDNTVKLFDFSKTSAKRAFKVFQDTE 217 (430)
T ss_pred -------------hheEEe--cc-------------------------------CCCeEEEEecccHHHHHHHHHhhccc
Confidence 225533 21 247999999975432 33444456
Q ss_pred cEEEEEecC--CeEEEEeCC-eEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCcc
Q 003907 194 SVCMVRCSP--RIVAVGLAT-QIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSG 270 (787)
Q Consensus 194 ~V~sV~~s~--~~LaV~~~~-~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~~~~~lAlspr~LAyas~~~~l~~~g 270 (787)
+|++|.|.| .+|++|.+. .+++||+.|.++... .+|+- |.. -++ .-+-|++.
T Consensus 218 ~vrsiSfHPsGefllvgTdHp~~rlYdv~T~Qcfvs----anPd~--qht---------~ai--~~V~Ys~t-------- 272 (430)
T KOG0640|consen 218 PVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVS----ANPDD--QHT---------GAI--TQVRYSST-------- 272 (430)
T ss_pred eeeeEeecCCCceEEEecCCCceeEEeccceeEeee----cCccc--ccc---------cce--eEEEecCC--------
Confidence 899999988 799999876 589999999875322 12210 000 000 00111110
Q ss_pred eeccccCCCCCcCCCcCCCCCceeEeeehhhhhhhhcccceeecccccccCCCCCCCCcccCCccccccccccccCCCce
Q 003907 271 RLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGI 350 (787)
Q Consensus 271 ~~s~q~lt~~~~s~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~ 350 (787)
|. --++++.||.
T Consensus 273 --------------------~~------------------------------------------------lYvTaSkDG~ 284 (430)
T KOG0640|consen 273 --------------------GS------------------------------------------------LYVTASKDGA 284 (430)
T ss_pred --------------------cc------------------------------------------------EEEEeccCCc
Confidence 00 0125678999
Q ss_pred EEEEECCCCcEEEEec-cCCC-CeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcc-----cC-CCCCC------cc---
Q 003907 351 VVVKDFVTRAIISQFK-AHTS-PISALCFDPSGTLLVTASVYGNNINIFRIMPSCM-----RS-GSGNH------KY--- 413 (787)
Q Consensus 351 V~IwDl~s~~~v~~~~-aH~~-pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~-----~~-~~g~~------~~--- 413 (787)
|+|||-.+++++.+|. +|.+ .|.+..|..+|+++++.+. +.++++|.+.+... +- .+|.+ .+
T Consensus 285 IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~-DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNht 363 (430)
T KOG0640|consen 285 IKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGK-DSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHT 363 (430)
T ss_pred EEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCC-cceeeeeeecCCceEEEEecCCcccchhhhhhhhhcCc
Confidence 9999999999999995 7864 7899999999999999998 56799999865321 00 01110 00
Q ss_pred ---------------ccCCc-ceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEeC
Q 003907 414 ---------------DWNSS-HVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVL 460 (787)
Q Consensus 414 ---------------~~~~s-~~~l~~l~rG~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl 460 (787)
-|++. ..++..+.-| ++..+..|.-||.+--++++|+|-.+++|--
T Consensus 364 EdyVl~pDEas~slcsWdaRtadr~~l~slg-Hn~a~R~i~HSP~~p~FmTcsdD~raRFWyr 425 (430)
T KOG0640|consen 364 EDYVLFPDEASNSLCSWDARTADRVALLSLG-HNGAVRWIVHSPVEPAFMTCSDDFRARFWYR 425 (430)
T ss_pred cceEEccccccCceeeccccchhhhhhcccC-CCCCceEEEeCCCCCceeeecccceeeeeee
Confidence 11111 0111122234 3455888999999999999999999999964
No 129
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.26 E-value=2.6e-11 Score=129.46 Aligned_cols=214 Identities=16% Similarity=0.145 Sum_probs=136.4
Q ss_pred CCEEEEEECCCCeEEEEEeCC-CcEEEEEecC-CeEEEEeCCeEEEEECCCCceeEEEEecCCcccCCCCccccccccce
Q 003907 172 PTAVRFYSFQSHCYEHVLRFR-SSVCMVRCSP-RIVAVGLATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGP 249 (787)
Q Consensus 172 p~tVrlWdlktg~~v~tL~f~-s~V~sV~~s~-~~LaV~~~~~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~~~~~ 249 (787)
++.|+|||+.+.+++.+++.+ +.|..|.+.. .++.||.+.+|+.|-+.- ..++++.+...- .++ ..
T Consensus 88 DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~~~~~tvgdDKtvK~wk~~~-~p~~tilg~s~~-------~gI----dh 155 (433)
T KOG0268|consen 88 DGEVKIWNLSQRECIRTFKAHEGLVRGICVTQTSFFTVGDDKTVKQWKIDG-PPLHTILGKSVY-------LGI----DH 155 (433)
T ss_pred CceEEEEehhhhhhhheeecccCceeeEEecccceEEecCCcceeeeeccC-Ccceeeeccccc-------ccc----cc
Confidence 368999999999999999976 4999999987 667778888999998654 466666643220 000 00
Q ss_pred eEEccceEEEecCCceecCcceeccccCCC-CCcCCCcCCCCCceeEeeehhhhhhhhcccceeecccccccCCCCCCCC
Q 003907 250 MAVGPRWLAYASNTLLLSNSGRLSPQNLTP-SGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSP 328 (787)
Q Consensus 250 lAlspr~LAyas~~~~l~~~g~~s~q~lt~-~~~s~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~ 328 (787)
+- ...-.|++|.+..+ |+.... |..+.+. | -.+...
T Consensus 156 ~~-~~~~FaTcGe~i~I-------WD~~R~~Pv~smsw---------------------G--------------~Dti~s 192 (433)
T KOG0268|consen 156 HR-KNSVFATCGEQIDI-------WDEQRDNPVSSMSW---------------------G--------------ADSISS 192 (433)
T ss_pred cc-ccccccccCceeee-------cccccCCccceeec---------------------C--------------CCceeE
Confidence 00 00223455544333 332211 1111000 0 001112
Q ss_pred cccCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCC
Q 003907 329 VSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGS 408 (787)
Q Consensus 329 ~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~ 408 (787)
..+|+.... -++.+..|+.|.|||++...++..+.- +..-+.|+|+|.+--+++|++ |+.+-.||++..
T Consensus 193 vkfNpvETs---ILas~~sDrsIvLyD~R~~~Pl~KVi~-~mRTN~IswnPeafnF~~a~E-D~nlY~~DmR~l------ 261 (433)
T KOG0268|consen 193 VKFNPVETS---ILASCASDRSIVLYDLRQASPLKKVIL-TMRTNTICWNPEAFNFVAANE-DHNLYTYDMRNL------ 261 (433)
T ss_pred EecCCCcch---heeeeccCCceEEEecccCCccceeee-eccccceecCccccceeeccc-cccceehhhhhh------
Confidence 233332211 245677899999999999887665432 234467999998877877877 677999998542
Q ss_pred CCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEeCCCC
Q 003907 409 GNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPF 463 (787)
Q Consensus 409 g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~~~ 463 (787)
. +++.. ++|+.. .|.++.|||.|+-+++||.|.||+||.++..
T Consensus 262 ~----------~p~~v-~~dhvs-AV~dVdfsptG~EfvsgsyDksIRIf~~~~~ 304 (433)
T KOG0268|consen 262 S----------RPLNV-HKDHVS-AVMDVDFSPTGQEFVSGSYDKSIRIFPVNHG 304 (433)
T ss_pred c----------ccchh-hcccce-eEEEeccCCCcchhccccccceEEEeecCCC
Confidence 0 23322 345443 4999999999999999999999999998763
No 130
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.25 E-value=2.8e-10 Score=124.32 Aligned_cols=179 Identities=15% Similarity=0.134 Sum_probs=120.4
Q ss_pred CCEEEEEECCCCeEEEEEeCC-CcEEEEEecC---CeEEEE-eCCeEEEEECCCCceeEEEEecCCcccCCCCccccccc
Q 003907 172 PTAVRFYSFQSHCYEHVLRFR-SSVCMVRCSP---RIVAVG-LATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVG 246 (787)
Q Consensus 172 p~tVrlWdlktg~~v~tL~f~-s~V~sV~~s~---~~LaV~-~~~~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~~ 246 (787)
++||++||+.+|++..++.++ ..|..+.|.+ .+|+.| .+++|.++|.+...+ .
T Consensus 265 D~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~-------s--------------- 322 (463)
T KOG0270|consen 265 DKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSN-------S--------------- 322 (463)
T ss_pred CceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccc-------c---------------
Confidence 579999999999999999955 5999999987 566665 577899999764210 0
Q ss_pred cceeEEccceEEEecCCceecCcceeccccCCCCCcCCCcCCCCCceeEeeehhhhhhhhcccceeecccccccCCCCCC
Q 003907 247 YGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSS 326 (787)
Q Consensus 247 ~~~lAlspr~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~ 326 (787)
... |=+-+.- -++.|+...+
T Consensus 323 --~~~----wk~~g~V-------Ekv~w~~~se----------------------------------------------- 342 (463)
T KOG0270|consen 323 --GKE----WKFDGEV-------EKVAWDPHSE----------------------------------------------- 342 (463)
T ss_pred --Cce----EEeccce-------EEEEecCCCc-----------------------------------------------
Confidence 001 1111110 0111222110
Q ss_pred CCcccCCccccccccccccCCCceEEEEECCCC-cEEEEeccCCCCeEEEEECCC-CCEEEEEEcCCCEEEEEeCCCCcc
Q 003907 327 SPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTR-AIISQFKAHTSPISALCFDPS-GTLLVTASVYGNNINIFRIMPSCM 404 (787)
Q Consensus 327 ~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~-~~v~~~~aH~~pIsaLaFSpd-G~lLATaS~dG~~IrVWdi~~~~~ 404 (787)
. .+..+..||+|+-+|+++. +++.++++|.++|++|++++. -.+|+|+|.++ .++||++...
T Consensus 343 --~-----------~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~-~Vklw~~~~~-- 406 (463)
T KOG0270|consen 343 --N-----------SFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDK-VVKLWKFDVD-- 406 (463)
T ss_pred --e-----------eEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccc-eEEEEeecCC--
Confidence 0 0112346899999999885 899999999999999999985 45789999955 6999998431
Q ss_pred cCCCCCCccccCCcceEEEEEecccccccEEEEEEccCC-CEEEEEeCCCeEEEEeCCCC
Q 003907 405 RSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYS-QWIAIVSSKGTCHVFVLSPF 463 (787)
Q Consensus 405 ~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg-~~LAs~S~dgTVhIwdl~~~ 463 (787)
++...+.+.+.-| ...|.++.|+- -+||.|+..+.++|||+...
T Consensus 407 -----------~~~~v~~~~~~~~----rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~ 451 (463)
T KOG0270|consen 407 -----------SPKSVKEHSFKLG----RLHCFALDPDVAFTLAFGGEKAVLRVWDIFTN 451 (463)
T ss_pred -----------CCccccccccccc----ceeecccCCCcceEEEecCccceEEEeecccC
Confidence 1111222222222 25678888875 46888888889999999765
No 131
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.24 E-value=7.2e-10 Score=116.99 Aligned_cols=222 Identities=15% Similarity=0.166 Sum_probs=141.8
Q ss_pred CCeEEEEEecC-cEEEEEccCCCceeEeeeeccCcEEEEEEecCCCCCCCCCCccccCcEEEEEEcCCCCCCCCCCCcCC
Q 003907 74 FKQVLLLGYQN-GFQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSH 152 (787)
Q Consensus 74 ~~~vL~lG~~~-G~qVWdv~~~~~~~ells~~dg~V~~v~~lP~P~~~~~~d~F~~srpLLavV~~d~~~~~~~~~~~~~ 152 (787)
.+..++.|..+ .|+|||+....+ ...+..|.|.|.+++|.|. +..+ .|| . +.+
T Consensus 52 s~~~~aSGssDetI~IYDm~k~~q-lg~ll~HagsitaL~F~~~---------~S~s-hLl-S-~sd------------- 105 (362)
T KOG0294|consen 52 SGPYVASGSSDETIHIYDMRKRKQ-LGILLSHAGSITALKFYPP---------LSKS-HLL-S-GSD------------- 105 (362)
T ss_pred cceeEeccCCCCcEEEEeccchhh-hcceeccccceEEEEecCC---------cchh-hee-e-ecC-------------
Confidence 36688888876 699999965444 3456667999999999874 3333 243 2 222
Q ss_pred CCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCC-CcEEEEEecC-C--eEEEEeCCeEEEEECCCCceeEEEE
Q 003907 153 LGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFR-SSVCMVRCSP-R--IVAVGLATQIYCFDALTLENKFSVL 228 (787)
Q Consensus 153 ~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~v~tL~f~-s~V~sV~~s~-~--~LaV~~~~~I~iwD~~T~e~l~tl~ 228 (787)
++.|.+|+...=+++++++-+ ..|..|++.| . -|.|+.|+.++.||+.+|+.-+.+.
T Consensus 106 -------------------DG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~ 166 (362)
T KOG0294|consen 106 -------------------DGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLN 166 (362)
T ss_pred -------------------CCcEEEEEcCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeec
Confidence 258999999999999999865 5899999988 3 3456778889999999998766654
Q ss_pred ecCCcccCCCCccccccccceeEEcc--ceEEEecCCceecCcceeccccCCCCCcCCCcCCCCCceeEeeehhhhhhhh
Q 003907 229 TYPVPQLAGQGAVGINVGYGPMAVGP--RWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFA 306 (787)
Q Consensus 229 t~p~p~~~~~~~~~~~~~~~~lAlsp--r~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~sp~~g~lva~~a~d~sk~la 306 (787)
-...+ ..+.++| .+.+..... +.-.+|.-.. ++.++...+
T Consensus 167 L~~~a--------------t~v~w~~~Gd~F~v~~~~------~i~i~q~d~A----------------~v~~~i~~~-- 208 (362)
T KOG0294|consen 167 LKNKA--------------TLVSWSPQGDHFVVSGRN------KIDIYQLDNA----------------SVFREIENP-- 208 (362)
T ss_pred cCCcc--------------eeeEEcCCCCEEEEEecc------EEEEEecccH----------------hHhhhhhcc--
Confidence 22111 1133333 112222111 1111111000 000000000
Q ss_pred cccceeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEE--CCCCCEE
Q 003907 307 AGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCF--DPSGTLL 384 (787)
Q Consensus 307 ~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~v~~~~aH~~pIsaLaF--SpdG~lL 384 (787)
.+. .|...+ .......+..++.|.+||..+..+...|.+|...|-.+.+ +|++.+|
T Consensus 209 ---~r~---l~~~~l----------------~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~l 266 (362)
T KOG0294|consen 209 ---KRI---LCATFL----------------DGSELLVGGDNEWISLKDTDSDTPLTEFLAHENRVKDIASYTNPEHEYL 266 (362)
T ss_pred ---ccc---eeeeec----------------CCceEEEecCCceEEEeccCCCccceeeecchhheeeeEEEecCCceEE
Confidence 000 010000 0012335667899999999999999999999999999984 7889999
Q ss_pred EEEEcCCCEEEEEeCCC
Q 003907 385 VTASVYGNNINIFRIMP 401 (787)
Q Consensus 385 ATaS~dG~~IrVWdi~~ 401 (787)
+|+|.||. |+|||+..
T Consensus 267 vTaSSDG~-I~vWd~~~ 282 (362)
T KOG0294|consen 267 VTASSDGF-IKVWDIDM 282 (362)
T ss_pred EEeccCce-EEEEEccc
Confidence 99999885 99999854
No 132
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.24 E-value=2.3e-10 Score=122.88 Aligned_cols=104 Identities=20% Similarity=0.233 Sum_probs=84.3
Q ss_pred ccccCCCceEEEEECCCC---cEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCc
Q 003907 342 GADMDNAGIVVVKDFVTR---AIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSS 418 (787)
Q Consensus 342 ~~s~~~dG~V~IwDl~s~---~~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s 418 (787)
+++++.||.|+|||++.+ .++.. ++|.+-|+.|.|+.+-.+||+|+++|+ ++|||++.... +
T Consensus 273 faScS~DgsIrIWDiRs~~~~~~~~~-kAh~sDVNVISWnr~~~lLasG~DdGt-~~iwDLR~~~~----~--------- 337 (440)
T KOG0302|consen 273 FASCSCDGSIRIWDIRSGPKKAAVST-KAHNSDVNVISWNRREPLLASGGDDGT-LSIWDLRQFKS----G--------- 337 (440)
T ss_pred EEeeecCceEEEEEecCCCccceeEe-eccCCceeeEEccCCcceeeecCCCce-EEEEEhhhccC----C---------
Confidence 567899999999999987 33433 899999999999999889999999886 99999975311 1
Q ss_pred ceEEEEEecccccccEEEEEEcc-CCCEEEEEeCCCeEEEEeCCCC
Q 003907 419 HVHLYKLHRGITSATIQDICFSH-YSQWIAIVSSKGTCHVFVLSPF 463 (787)
Q Consensus 419 ~~~l~~l~rG~~~a~I~slaFSp-Dg~~LAs~S~dgTVhIwdl~~~ 463 (787)
.++..+.+ |.+.|++|.|+| +...||+++.|..|.|||+.-.
T Consensus 338 -~pVA~fk~--Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE 380 (440)
T KOG0302|consen 338 -QPVATFKY--HKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVE 380 (440)
T ss_pred -CcceeEEe--ccCCeeEEEeccccCceEEeccCCCcEEEEEeecc
Confidence 35555554 456899999997 4578899999999999999743
No 133
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.23 E-value=5.7e-10 Score=122.46 Aligned_cols=176 Identities=11% Similarity=0.111 Sum_probs=128.7
Q ss_pred CCEEEEEECCCCeEEEEEeCC-CcEEEEEecC---CeEEEEeCCeEEEEECCCCceeEEEEecCCcccCCCCcccccccc
Q 003907 172 PTAVRFYSFQSHCYEHVLRFR-SSVCMVRCSP---RIVAVGLATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGY 247 (787)
Q Consensus 172 p~tVrlWdlktg~~v~tL~f~-s~V~sV~~s~---~~LaV~~~~~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~~~ 247 (787)
++.|.|||.++.+.++++..+ ..|.++.|-. ++.+.+.+..|++|++..+..+.++.+|+.-
T Consensus 223 d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~-------------- 288 (479)
T KOG0299|consen 223 DRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLYGHQDG-------------- 288 (479)
T ss_pred CceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHhCCccc--------------
Confidence 368999999999999998755 6999998865 5666777889999999998888888777651
Q ss_pred ceeEEccceEEEecCCceecCcceeccccCCCCCcCCCcCCCCCceeEeeehhhhhhhhcccceeecccccccCCCCCCC
Q 003907 248 GPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSS 327 (787)
Q Consensus 248 ~~lAlspr~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~ 327 (787)
.++++- .+ .+++
T Consensus 289 -v~~Ida----L~--------reR~------------------------------------------------------- 300 (479)
T KOG0299|consen 289 -VLGIDA----LS--------RERC------------------------------------------------------- 300 (479)
T ss_pred -eeeech----hc--------ccce-------------------------------------------------------
Confidence 222210 00 0000
Q ss_pred CcccCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCC
Q 003907 328 PVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSG 407 (787)
Q Consensus 328 ~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~ 407 (787)
...+..|.++++|++.. ...-.|.+|.+.|-|++|=. ...++|||++|. |-+|++..-
T Consensus 301 --------------vtVGgrDrT~rlwKi~e-esqlifrg~~~sidcv~~In-~~HfvsGSdnG~-IaLWs~~KK----- 358 (479)
T KOG0299|consen 301 --------------VTVGGRDRTVRLWKIPE-ESQLIFRGGEGSIDCVAFIN-DEHFVSGSDNGS-IALWSLLKK----- 358 (479)
T ss_pred --------------EEeccccceeEEEeccc-cceeeeeCCCCCeeeEEEec-ccceeeccCCce-EEEeeeccc-----
Confidence 00234689999999954 44567889999999999974 468889999886 999998531
Q ss_pred CCCCccccCCcceEEEEEe--cccc--------cccEEEEEEccCCCEEEEEeCCCeEEEEeCCCC
Q 003907 408 SGNHKYDWNSSHVHLYKLH--RGIT--------SATIQDICFSHYSQWIAIVSSKGTCHVFVLSPF 463 (787)
Q Consensus 408 ~g~~~~~~~~s~~~l~~l~--rG~~--------~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~~~ 463 (787)
.+++..+ -|.. +..|++|+-.|.+..+|+||.+|.|+||.+++.
T Consensus 359 ------------kplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g 412 (479)
T KOG0299|consen 359 ------------KPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDG 412 (479)
T ss_pred ------------CceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCC
Confidence 1222221 1111 126999999999999999999999999999863
No 134
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.23 E-value=1e-11 Score=135.95 Aligned_cols=207 Identities=15% Similarity=0.206 Sum_probs=139.4
Q ss_pred CEEEEEECCCCeEEEEEeCCCcEEEEEe--cCCeEEEEeCCeEEEEECCCCceeEEEEecCCcccCCCCcccccccccee
Q 003907 173 TAVRFYSFQSHCYEHVLRFRSSVCMVRC--SPRIVAVGLATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPM 250 (787)
Q Consensus 173 ~tVrlWdlktg~~v~tL~f~s~V~sV~~--s~~~LaV~~~~~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~~~~~l 250 (787)
+.|-.+|..++.+.+++.....|++|.| |.+++||+...-+||||- .|..+|+|..+.. +..+
T Consensus 151 GHlAa~Dw~t~~L~~Ei~v~Etv~Dv~~LHneq~~AVAQK~y~yvYD~-~GtElHClk~~~~--------------v~rL 215 (545)
T KOG1272|consen 151 GHLAAFDWVTKKLHFEINVMETVRDVTFLHNEQFFAVAQKKYVYVYDN-NGTELHCLKRHIR--------------VARL 215 (545)
T ss_pred cceeeeecccceeeeeeehhhhhhhhhhhcchHHHHhhhhceEEEecC-CCcEEeehhhcCc--------------hhhh
Confidence 5788999999999999999999999998 568999999999999995 4556888876432 2234
Q ss_pred EEcc--ceEEEecCCceecCcceeccccCCCCCcCCCcCCCCCceeEeeehhhhhhhhcccceeecccccccCCCCCCCC
Q 003907 251 AVGP--RWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSP 328 (787)
Q Consensus 251 Alsp--r~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~ 328 (787)
.|=| -+||.+++. |-..++..+ -|.+|+..+. | . +....
T Consensus 216 eFLPyHfLL~~~~~~------G~L~Y~DVS-----------~GklVa~~~t--------~-----~---------G~~~v 256 (545)
T KOG1272|consen 216 EFLPYHFLLVAASEA------GFLKYQDVS-----------TGKLVASIRT--------G-----A---------GRTDV 256 (545)
T ss_pred cccchhheeeecccC------CceEEEeec-----------hhhhhHHHHc--------c-----C---------Cccch
Confidence 4444 345555543 222233221 0333332110 0 0 00011
Q ss_pred cccCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCC
Q 003907 329 VSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGS 408 (787)
Q Consensus 329 ~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~ 408 (787)
+.-||-... +-.+...|+|.+|.-...+++..|..|.++|++|+++++|+|+||++. ++.++|||++..
T Consensus 257 m~qNP~NaV----ih~GhsnGtVSlWSP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~-Dr~~kIWDlR~~------ 325 (545)
T KOG1272|consen 257 MKQNPYNAV----IHLGHSNGTVSLWSPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGL-DRKVKIWDLRNF------ 325 (545)
T ss_pred hhcCCccce----EEEcCCCceEEecCCCCcchHHHHHhcCCCcceEEECCCCcEEeeccc-ccceeEeeeccc------
Confidence 111221111 224678899999999999999999999999999999999999999999 556999999642
Q ss_pred CCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEeC
Q 003907 409 GNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVL 460 (787)
Q Consensus 409 g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl 460 (787)
.++..++. ......++||.-|. ||.+- -..|+||.=
T Consensus 326 -----------~ql~t~~t---p~~a~~ls~Sqkgl-LA~~~-G~~v~iw~d 361 (545)
T KOG1272|consen 326 -----------YQLHTYRT---PHPASNLSLSQKGL-LALSY-GDHVQIWKD 361 (545)
T ss_pred -----------cccceeec---CCCccccccccccc-eeeec-CCeeeeehh
Confidence 24444432 23467899998773 44443 346999963
No 135
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.21 E-value=2.4e-09 Score=112.88 Aligned_cols=248 Identities=16% Similarity=0.098 Sum_probs=157.5
Q ss_pred CCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCceeEeeeeccCcEEEEEEecCCCCCCCCCCccccCc
Q 003907 53 EDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHP 131 (787)
Q Consensus 53 ~~~~~~v~wa~Fd~l~~~~~~~~~vL~lG~~~G-~qVWdv~~~~~~~ells~~dg~V~~v~~lP~P~~~~~~d~F~~srp 131 (787)
...+|+|.-+.|+. ..+-|+++..+| +++||++.. . ..+.=.|++|+...+|.+. +
T Consensus 10 npP~d~IS~v~f~~-------~~~~LLvssWDgslrlYdv~~~-~-l~~~~~~~~plL~c~F~d~------------~-- 66 (323)
T KOG1036|consen 10 NPPEDGISSVKFSP-------SSSDLLVSSWDGSLRLYDVPAN-S-LKLKFKHGAPLLDCAFADE------------S-- 66 (323)
T ss_pred CCChhceeeEEEcC-------cCCcEEEEeccCcEEEEeccch-h-hhhheecCCceeeeeccCC------------c--
Confidence 34689999999972 234566677777 999999653 2 2333467788888886631 1
Q ss_pred EEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCCcEEEEEecC---CeEEEE
Q 003907 132 FLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRSSVCMVRCSP---RIVAVG 208 (787)
Q Consensus 132 LLavV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~v~tL~f~s~V~sV~~s~---~~LaV~ 208 (787)
-+ + +|+ .++.|+.+|+.+++.-.-..+...|..|..++ .+++.+
T Consensus 67 ~~-~-~G~-------------------------------~dg~vr~~Dln~~~~~~igth~~~i~ci~~~~~~~~vIsgs 113 (323)
T KOG1036|consen 67 TI-V-TGG-------------------------------LDGQVRRYDLNTGNEDQIGTHDEGIRCIEYSYEVGCVISGS 113 (323)
T ss_pred eE-E-Eec-------------------------------cCceEEEEEecCCcceeeccCCCceEEEEeeccCCeEEEcc
Confidence 12 2 221 24789999999998877777888999999885 455556
Q ss_pred eCCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCcceeccccCCCCCcCCCcCC
Q 003907 209 LATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSP 288 (787)
Q Consensus 209 ~~~~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~~~~~lAlspr~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~sp 288 (787)
.++.|++||.++-....++.. +.+ ...|.++ ++
T Consensus 114 WD~~ik~wD~R~~~~~~~~d~-~kk-------------Vy~~~v~-------g~-------------------------- 146 (323)
T KOG1036|consen 114 WDKTIKFWDPRNKVVVGTFDQ-GKK-------------VYCMDVS-------GN-------------------------- 146 (323)
T ss_pred cCccEEEEecccccccccccc-Cce-------------EEEEecc-------CC--------------------------
Confidence 788999999886221111110 000 0111110 00
Q ss_pred CCCceeEeeehhhhhhhhcccceeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECCCCcEEEEecc-
Q 003907 289 GGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKA- 367 (787)
Q Consensus 289 ~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~v~~~~a- 367 (787)
.+..+..+..|.+||+++.....+.+.
T Consensus 147 ----------------------------------------------------~LvVg~~~r~v~iyDLRn~~~~~q~reS 174 (323)
T KOG1036|consen 147 ----------------------------------------------------RLVVGTSDRKVLIYDLRNLDEPFQRRES 174 (323)
T ss_pred ----------------------------------------------------EEEEeecCceEEEEEcccccchhhhccc
Confidence 011234567899999998765544433
Q ss_pred -CCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEeccccc-----ccEEEEEEcc
Q 003907 368 -HTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITS-----ATIQDICFSH 441 (787)
Q Consensus 368 -H~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~-----a~I~slaFSp 441 (787)
-.-.+.||++-|++.=.|.+|.+|+ |-|=.+.+... .++..-.++.+|-... -.|.+|+|+|
T Consensus 175 ~lkyqtR~v~~~pn~eGy~~sSieGR-VavE~~d~s~~-----------~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp 242 (323)
T KOG1036|consen 175 SLKYQTRCVALVPNGEGYVVSSIEGR-VAVEYFDDSEE-----------AQSKKYAFKCHRLSEKDTEIIYPVNAIAFHP 242 (323)
T ss_pred cceeEEEEEEEecCCCceEEEeecce-EEEEccCCchH-----------HhhhceeEEeeecccCCceEEEEeceeEecc
Confidence 2457899999999888999999998 44433322100 0011112233332111 1589999999
Q ss_pred CCCEEEEEeCCCeEEEEeCCCCCCcc
Q 003907 442 YSQWIAIVSSKGTCHVFVLSPFGGDS 467 (787)
Q Consensus 442 Dg~~LAs~S~dgTVhIwdl~~~gg~~ 467 (787)
--+.||+|+.||.|.+||+.+.+...
T Consensus 243 ~~~tfaTgGsDG~V~~Wd~~~rKrl~ 268 (323)
T KOG1036|consen 243 IHGTFATGGSDGIVNIWDLFNRKRLK 268 (323)
T ss_pred ccceEEecCCCceEEEccCcchhhhh
Confidence 99999999999999999998765443
No 136
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.21 E-value=1.8e-09 Score=115.72 Aligned_cols=204 Identities=17% Similarity=0.217 Sum_probs=153.5
Q ss_pred eEeeeeccCcEEEEEEecCCCCCCCCCCccccCcEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEE
Q 003907 98 NELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRF 177 (787)
Q Consensus 98 ~ells~~dg~V~~v~~lP~P~~~~~~d~F~~srpLLavV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVrl 177 (787)
...+.+|.++|.++.+.|+ .+|+| +|++ +..-.|
T Consensus 57 ~~tF~~H~~svFavsl~P~-------------~~l~a--TGGg-------------------------------DD~Afl 90 (399)
T KOG0296|consen 57 LVTFDKHTDSVFAVSLHPN-------------NNLVA--TGGG-------------------------------DDLAFL 90 (399)
T ss_pred eeehhhcCCceEEEEeCCC-------------CceEE--ecCC-------------------------------CceEEE
Confidence 4567889999999999873 24653 3322 147889
Q ss_pred EECCCCeEEEEEeCC-CcEEEEEecC--CeEEEE-eCCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEc
Q 003907 178 YSFQSHCYEHVLRFR-SSVCMVRCSP--RIVAVG-LATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVG 253 (787)
Q Consensus 178 Wdlktg~~v~tL~f~-s~V~sV~~s~--~~LaV~-~~~~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~~~~~lAls 253 (787)
|+..+|+...++..+ .+|..+.|+. .+||+| ++++|.||+..|+.....+.. +. .-+
T Consensus 91 W~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~~-e~---------------~di--- 151 (399)
T KOG0296|consen 91 WDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQ-EV---------------EDI--- 151 (399)
T ss_pred EEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceEEEeec-cc---------------Cce---
Confidence 999999999999754 6999999987 688875 578999999999987776651 11 011
Q ss_pred cceEEEecCCceecCcceeccccCCCCCcCCCcCCCCCceeEeeehhhhhhhhcccceeecccccccCCCCCCCCcccCC
Q 003907 254 PRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNS 333 (787)
Q Consensus 254 pr~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~~s~s~ 333 (787)
.||-.-..
T Consensus 152 -eWl~WHp~----------------------------------------------------------------------- 159 (399)
T KOG0296|consen 152 -EWLKWHPR----------------------------------------------------------------------- 159 (399)
T ss_pred -EEEEeccc-----------------------------------------------------------------------
Confidence 12222110
Q ss_pred ccccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCcc
Q 003907 334 VWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKY 413 (787)
Q Consensus 334 ~~~~~~~~~~s~~~dG~V~IwDl~s~~~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~ 413 (787)
+-.++.++.||.+.+|.+.++.....|.+|..++++=.|.|+|+.++|+..||+ |++|+.++ |
T Consensus 160 -----a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgt-i~~Wn~kt-------g---- 222 (399)
T KOG0296|consen 160 -----AHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGT-IIVWNPKT-------G---- 222 (399)
T ss_pred -----ccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEecCce-EEEEecCC-------C----
Confidence 001124568999999999998889999999999999999999999999999776 99999865 4
Q ss_pred ccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEeCCC
Q 003907 414 DWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSP 462 (787)
Q Consensus 414 ~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~~ 462 (787)
++++++.. .......++.++.++..+..++.++.+++-+...
T Consensus 223 ------~p~~~~~~-~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~s 264 (399)
T KOG0296|consen 223 ------QPLHKITQ-AEGLELPCISLNLAGSTLTKGNSEGVACGVNNGS 264 (399)
T ss_pred ------ceeEEecc-cccCcCCccccccccceeEeccCCccEEEEcccc
Confidence 46666642 2234567899999999999999999999866543
No 137
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.20 E-value=2.1e-09 Score=125.88 Aligned_cols=222 Identities=15% Similarity=0.191 Sum_probs=151.8
Q ss_pred EEEEEec-CcEEEEEccCCCceeEeeeeccCcEEEEEEecCCCCCCCCCCccccCcEEEEEEcCCCCCCCCCCCcCCCCC
Q 003907 77 VLLLGYQ-NGFQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGG 155 (787)
Q Consensus 77 vL~lG~~-~G~qVWdv~~~~~~~ells~~dg~V~~v~~lP~P~~~~~~d~F~~srpLLavV~~d~~~~~~~~~~~~~~~~ 155 (787)
-|++|.. +.+++|... .++...++-+-.-|++.+.+. +++.++|. ++|
T Consensus 68 ~f~~~s~~~tv~~y~fp-s~~~~~iL~Rftlp~r~~~v~-------------g~g~~iaa-gsd---------------- 116 (933)
T KOG1274|consen 68 HFLTGSEQNTVLRYKFP-SGEEDTILARFTLPIRDLAVS-------------GSGKMIAA-GSD---------------- 116 (933)
T ss_pred ceEEeeccceEEEeeCC-CCCccceeeeeeccceEEEEe-------------cCCcEEEe-ecC----------------
Confidence 4555555 569999994 466666777777788888876 45557654 222
Q ss_pred cccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCC-CcEEEEEecC--CeEEEE-eCCeEEEEECCCCceeEEEEecC
Q 003907 156 VRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFR-SSVCMVRCSP--RIVAVG-LATQIYCFDALTLENKFSVLTYP 231 (787)
Q Consensus 156 ~r~g~~~~~~~~~~~~p~tVrlWdlktg~~v~tL~f~-s~V~sV~~s~--~~LaV~-~~~~I~iwD~~T~e~l~tl~t~p 231 (787)
+..|++-++.....+..++.+ .+|..|.++| ++|||+ .+++|+|||+.++.+.+++..-+
T Consensus 117 ----------------D~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~ 180 (933)
T KOG1274|consen 117 ----------------DTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVD 180 (933)
T ss_pred ----------------ceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCC
Confidence 368999999998888888754 6999999998 688875 57899999999999888886421
Q ss_pred -CcccCCCCccccccccceeEEccceEEEecCCceecCcceeccccCCCCCcCCCcCCCCCceeEeeehhhhhhhhcccc
Q 003907 232 -VPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLS 310 (787)
Q Consensus 232 -~p~~~~~~~~~~~~~~~~lAlspr~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~sp~~g~lva~~a~d~sk~la~G~~ 310 (787)
.-+ +-. .. .+..++.+|.+|.+++
T Consensus 181 k~n~---------------~~~---------s~----------------i~~~~aW~Pk~g~la~--------------- 205 (933)
T KOG1274|consen 181 KDNE---------------FIL---------SR----------------ICTRLAWHPKGGTLAV--------------- 205 (933)
T ss_pred cccc---------------ccc---------cc----------------eeeeeeecCCCCeEEe---------------
Confidence 100 000 00 0011223344444332
Q ss_pred eeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECCCCcEEEEecc--CCCCeEEEEECCCCCEEEEEE
Q 003907 311 KTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKA--HTSPISALCFDPSGTLLVTAS 388 (787)
Q Consensus 311 ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~v~~~~a--H~~pIsaLaFSpdG~lLATaS 388 (787)
...++.|++|+..+......++. |.+.+..++|||+|+|||+++
T Consensus 206 ----------------------------------~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~ 251 (933)
T KOG1274|consen 206 ----------------------------------PPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYIAAST 251 (933)
T ss_pred ----------------------------------eccCCeEEEEccCCceeheeecccccccceEEEEEcCCCcEEeeec
Confidence 24578899999888887777753 445599999999999999999
Q ss_pred cCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEE
Q 003907 389 VYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVF 458 (787)
Q Consensus 389 ~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~LAs~S~dgTVhIw 458 (787)
.+|. |-|||+.++ ..++++ ..|++++|-|++.-|-.-...|+.-+|
T Consensus 252 ~~g~-I~vWnv~t~------------------~~~~~~-----~~Vc~~aw~p~~n~it~~~~~g~~~~~ 297 (933)
T KOG1274|consen 252 LDGQ-ILVWNVDTH------------------ERHEFK-----RAVCCEAWKPNANAITLITALGTLGVS 297 (933)
T ss_pred cCCc-EEEEecccc------------------hhcccc-----ceeEEEecCCCCCeeEEEeeccccccC
Confidence 9776 899998542 112222 248999999988766555555544433
No 138
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.20 E-value=1.2e-08 Score=113.11 Aligned_cols=276 Identities=14% Similarity=0.182 Sum_probs=163.8
Q ss_pred CCcEEEEEEeeccCCCCCCCeEEEEEecCcEEEEEccCCCceeE---eeeecc-CcEEEEEEecCCCCCCCCCCccccCc
Q 003907 56 KDQVTWAGFDRLEYGPSVFKQVLLLGYQNGFQVLDVEDASNFNE---LVSKRD-GPVSFLQMQPFPVKDDGCEGFRKLHP 131 (787)
Q Consensus 56 ~~~v~wa~Fd~l~~~~~~~~~vL~lG~~~G~qVWdv~~~~~~~e---lls~~d-g~V~~v~~lP~P~~~~~~d~F~~srp 131 (787)
.|-|.-|.|.- .+++++++..++.|-.|+... +.+.+ ++.+++ .-|.+|+|+++. .
T Consensus 200 ne~v~~a~FHP------td~nliit~Gk~H~~Fw~~~~-~~l~k~~~~fek~ekk~Vl~v~F~eng-----------d-- 259 (626)
T KOG2106|consen 200 NEVVFLATFHP------TDPNLIITCGKGHLYFWTLRG-GSLVKRQGIFEKREKKFVLCVTFLENG-----------D-- 259 (626)
T ss_pred cceEEEEEecc------CCCcEEEEeCCceEEEEEccC-CceEEEeeccccccceEEEEEEEcCCC-----------C--
Confidence 35566677752 246778888788899999864 33322 455555 458888888652 1
Q ss_pred EEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEe-CCCcEEEEEecC-CeEEEEe
Q 003907 132 FLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLR-FRSSVCMVRCSP-RIVAVGL 209 (787)
Q Consensus 132 LLavV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~v~tL~-f~s~V~sV~~s~-~~LaV~~ 209 (787)
. +++|. .+.|.||+-.+.+..++.. +++.|+++.+-+ ..|+.|.
T Consensus 260 v---iTgDS-------------------------------~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~GtllSGg 305 (626)
T KOG2106|consen 260 V---ITGDS-------------------------------GGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGTLLSGG 305 (626)
T ss_pred E---EeecC-------------------------------CceEEEEeCCCceEEeEeeecCCceEEEEEecCccEeecC
Confidence 2 34542 3689999998877776665 456899888766 3444455
Q ss_pred -CCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEcc-ceEEEecCCceecCcc-eeccccCCCCCcCCCc
Q 003907 210 -ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP-RWLAYASNTLLLSNSG-RLSPQNLTPSGVSPST 286 (787)
Q Consensus 210 -~~~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~~~~~lAlsp-r~LAyas~~~~l~~~g-~~s~q~lt~~~~s~s~ 286 (787)
|.+|..|| .+.+. +.....|+ +++| |-+|-...+.++-.+- .+...++.
T Consensus 306 KDRki~~Wd-~~y~k---~r~~elPe----------------~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~-------- 357 (626)
T KOG2106|consen 306 KDRKIILWD-DNYRK---LRETELPE----------------QFGPIRTVAEGKGDILVGTTRNFILQGTLE-------- 357 (626)
T ss_pred ccceEEecc-ccccc---cccccCch----------------hcCCeeEEecCCCcEEEeeccceEEEeeec--------
Confidence 45699999 44433 33223332 1222 3333332221110000 00000000
Q ss_pred CCCCCceeEeeehhhhhhhhcccceeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECCCCcEEEEec
Q 003907 287 SPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFK 366 (787)
Q Consensus 287 sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~v~~~~ 366 (787)
.+-++++. ++..+++ .-.... ......++++|+.|++|+ ..+++-+..
T Consensus 358 --~~f~~~v~------------------gh~delw----gla~hp------s~~q~~T~gqdk~v~lW~--~~k~~wt~~ 405 (626)
T KOG2106|consen 358 --NGFTLTVQ------------------GHGDELW----GLATHP------SKNQLLTCGQDKHVRLWN--DHKLEWTKI 405 (626)
T ss_pred --CCceEEEE------------------eccccee----eEEcCC------ChhheeeccCcceEEEcc--CCceeEEEE
Confidence 00011111 1111100 000000 001245678999999999 444443322
Q ss_pred cCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEE
Q 003907 367 AHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWI 446 (787)
Q Consensus 367 aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~L 446 (787)
-..|+.|+.|+|.| .||.+...|+ --|.|++. +.+..++. .+..|..++|||||.+|
T Consensus 406 -~~d~~~~~~fhpsg-~va~Gt~~G~-w~V~d~e~------------------~~lv~~~~--d~~~ls~v~ysp~G~~l 462 (626)
T KOG2106|consen 406 -IEDPAECADFHPSG-VVAVGTATGR-WFVLDTET------------------QDLVTIHT--DNEQLSVVRYSPDGAFL 462 (626)
T ss_pred -ecCceeEeeccCcc-eEEEeeccce-EEEEeccc------------------ceeEEEEe--cCCceEEEEEcCCCCEE
Confidence 24789999999999 8999998887 56888754 23444543 35689999999999999
Q ss_pred EEEeCCCeEEEEeCCCCCCccc
Q 003907 447 AIVSSKGTCHVFVLSPFGGDSG 468 (787)
Q Consensus 447 As~S~dgTVhIwdl~~~gg~~~ 468 (787)
|++|.|+.|.||.++..|....
T Consensus 463 Avgs~d~~iyiy~Vs~~g~~y~ 484 (626)
T KOG2106|consen 463 AVGSHDNHIYIYRVSANGRKYS 484 (626)
T ss_pred EEecCCCeEEEEEECCCCcEEE
Confidence 9999999999999998766543
No 139
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.19 E-value=5.4e-10 Score=126.63 Aligned_cols=228 Identities=12% Similarity=0.143 Sum_probs=157.4
Q ss_pred CeEEEEEe-cCcEEEEEccCCC-ceeEeeeeccCcEEEEEEecCCCCCCCCCCccccCcEEEEEEcCCCCCCCCCCCcCC
Q 003907 75 KQVLLLGY-QNGFQVLDVEDAS-NFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSH 152 (787)
Q Consensus 75 ~~vL~lG~-~~G~qVWdv~~~~-~~~ells~~dg~V~~v~~lP~P~~~~~~d~F~~srpLLavV~~d~~~~~~~~~~~~~ 152 (787)
++.|+.++ +..++||+....+ -+..++..|+.-|.++++. +.+++++|. |+
T Consensus 85 ~~tlIS~SsDtTVK~W~~~~~~~~c~stir~H~DYVkcla~~------------ak~~~lvaS--gG------------- 137 (735)
T KOG0308|consen 85 GKTLISASSDTTVKVWNAHKDNTFCMSTIRTHKDYVKCLAYI------------AKNNELVAS--GG------------- 137 (735)
T ss_pred CCceEEecCCceEEEeecccCcchhHhhhhcccchheeeeec------------ccCceeEEe--cC-------------
Confidence 33455554 4579999997643 5778899999999999874 134456543 31
Q ss_pred CCCcccCCcCCCCCCCCCCCCEEEEEECCCC--eEEEEEeC----------CCcEEEEEecCC--eEEEE-eCCeEEEEE
Q 003907 153 LGGVRDGMMDSQSGNCVNSPTAVRFYSFQSH--CYEHVLRF----------RSSVCMVRCSPR--IVAVG-LATQIYCFD 217 (787)
Q Consensus 153 ~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg--~~v~tL~f----------~s~V~sV~~s~~--~LaV~-~~~~I~iwD 217 (787)
-++.|.|||+.++ +.+++..+ ..+||+++.|+. +++.| .++-|++||
T Consensus 138 ------------------LD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wD 199 (735)
T KOG0308|consen 138 ------------------LDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWD 199 (735)
T ss_pred ------------------CCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCcccceEEec
Confidence 1378999999988 45555532 247999999995 44443 345599999
Q ss_pred CCCCceeEEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCcceeccccCCCCCcCCCcCCCCCceeEee
Q 003907 218 ALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARY 297 (787)
Q Consensus 218 ~~T~e~l~tl~t~p~p~~~~~~~~~~~~~~~~lAlspr~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~sp~~g~lva~~ 297 (787)
.+|.+.+..|.+|..- .-++ -...+ |+
T Consensus 200 prt~~kimkLrGHTdN---------------Vr~l-----l~~dD-------Gt-------------------------- 226 (735)
T KOG0308|consen 200 PRTCKKIMKLRGHTDN---------------VRVL-----LVNDD-------GT-------------------------- 226 (735)
T ss_pred cccccceeeeeccccc---------------eEEE-----EEcCC-------CC--------------------------
Confidence 9999999989887651 1111 11110 10
Q ss_pred ehhhhhhhhcccceeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEE
Q 003907 298 AMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCF 377 (787)
Q Consensus 298 a~d~sk~la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~v~~~~aH~~pIsaLaF 377 (787)
...+++.||+|++||+...++++++..|+..|.++.-
T Consensus 227 -------------------------------------------~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~ 263 (735)
T KOG0308|consen 227 -------------------------------------------RLLSASSDGTIRLWDLGQQRCLATYIVHKEGVWALQS 263 (735)
T ss_pred -------------------------------------------eEeecCCCceEEeeeccccceeeeEEeccCceEEEee
Confidence 1124567999999999999999999999999999999
Q ss_pred CCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEE
Q 003907 378 DPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHV 457 (787)
Q Consensus 378 SpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~LAs~S~dgTVhI 457 (787)
+|+=+.+.+|+.||. |..=|+... .....+++ ..+.|..+..+.+.+-+-+++.|+.|+-
T Consensus 264 ~~sf~~vYsG~rd~~-i~~Tdl~n~--------------~~~tlick-----~daPv~~l~~~~~~~~~WvtTtds~I~r 323 (735)
T KOG0308|consen 264 SPSFTHVYSGGRDGN-IYRTDLRNP--------------AKSTLICK-----EDAPVLKLHLHEHDNSVWVTTTDSSIKR 323 (735)
T ss_pred CCCcceEEecCCCCc-EEecccCCc--------------hhheEeec-----CCCchhhhhhccccCCceeeecccccee
Confidence 999999999999776 555566431 00122322 1245777777744444467778889999
Q ss_pred EeCCCC
Q 003907 458 FVLSPF 463 (787)
Q Consensus 458 wdl~~~ 463 (787)
|.+.+.
T Consensus 324 W~~~~~ 329 (735)
T KOG0308|consen 324 WKLEPD 329 (735)
T ss_pred cCCccc
Confidence 987654
No 140
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.19 E-value=2.5e-09 Score=122.06 Aligned_cols=99 Identities=13% Similarity=0.289 Sum_probs=78.7
Q ss_pred ceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecc
Q 003907 349 GIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRG 428 (787)
Q Consensus 349 G~V~IwDl~s~~~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG 428 (787)
..|+||+..+-..+..|..|.-.|+.|+|||||++|+++|. |+++.||..+.... .. .. +... -
T Consensus 552 AvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsR-DRt~sl~~~~~~~~---~e----------~~-fa~~-k 615 (764)
T KOG1063|consen 552 AVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLLSVSR-DRTVSLYEVQEDIK---DE----------FR-FACL-K 615 (764)
T ss_pred eEEEEEeccchhhhheecccceEEEEEEECCCCcEEEEeec-CceEEeeeeecccc---hh----------hh-hccc-c
Confidence 57999999988878889999999999999999999999999 56699998753210 00 01 1111 1
Q ss_pred cccccEEEEEEccCCCEEEEEeCCCeEEEEeCCCC
Q 003907 429 ITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPF 463 (787)
Q Consensus 429 ~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~~~ 463 (787)
.|...|++++|+||++++|++|.|++|+||.+...
T Consensus 616 ~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~ 650 (764)
T KOG1063|consen 616 AHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDL 650 (764)
T ss_pred ccceEEEEcccCcccceeEEecCCceEEEEeccCc
Confidence 23346999999999999999999999999998754
No 141
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.18 E-value=2.4e-10 Score=120.53 Aligned_cols=109 Identities=12% Similarity=0.228 Sum_probs=85.8
Q ss_pred ccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcc
Q 003907 340 HAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSH 419 (787)
Q Consensus 340 ~~~~s~~~dG~V~IwDl~s~~~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~ 419 (787)
..+.+++.|-.|.|||+. |+.+.++......-...+.||+|++||+++-.- .++||.+--. .+ |. =...
T Consensus 200 k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavSP~GRFia~~gFTp-DVkVwE~~f~--kd--G~-----fqev 268 (420)
T KOG2096|consen 200 KYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVSPDGRFIAVSGFTP-DVKVWEPIFT--KD--GT-----FQEV 268 (420)
T ss_pred eEEEEecCCCcEEEEecC-CceeeeeccccccccceeeCCCCcEEEEecCCC-CceEEEEEec--cC--cc-----hhhh
Confidence 345678889999999998 899999988888888889999999999998744 3899997321 11 21 0112
Q ss_pred eEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEeCC
Q 003907 420 VHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLS 461 (787)
Q Consensus 420 ~~l~~l~rG~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~ 461 (787)
.+++.|. |+ .+.|..++||++++.+++.|.||+.+|||++
T Consensus 269 ~rvf~Lk-GH-~saV~~~aFsn~S~r~vtvSkDG~wriwdtd 308 (420)
T KOG2096|consen 269 KRVFSLK-GH-QSAVLAAAFSNSSTRAVTVSKDGKWRIWDTD 308 (420)
T ss_pred hhhheec-cc-hhheeeeeeCCCcceeEEEecCCcEEEeecc
Confidence 3556664 54 4569999999999999999999999999986
No 142
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.18 E-value=9.3e-10 Score=120.71 Aligned_cols=246 Identities=15% Similarity=0.126 Sum_probs=150.7
Q ss_pred CCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEcc---CCCceeEeeeeccCcEEEEEEecCCCCCCCCCCccccCc
Q 003907 56 KDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVE---DASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHP 131 (787)
Q Consensus 56 ~~~v~wa~Fd~l~~~~~~~~~vL~lG~~~G-~qVWdv~---~~~~~~ells~~dg~V~~v~~lP~P~~~~~~d~F~~srp 131 (787)
.++|....|. +.+.++++++|...| +-+||+. +...-..++-.|.+||..|.+.|.- .+
T Consensus 186 ~~Rit~l~fH-----Pt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n----------~s-- 248 (498)
T KOG4328|consen 186 DRRITSLAFH-----PTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPAN----------TS-- 248 (498)
T ss_pred ccceEEEEec-----ccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCC----------hh--
Confidence 3456666665 445678999999988 9999993 3222234567889999999999852 22
Q ss_pred EEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeE--EEEEeCCC-cEEEEEecC---CeE
Q 003907 132 FLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCY--EHVLRFRS-SVCMVRCSP---RIV 205 (787)
Q Consensus 132 LLavV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~--v~tL~f~s-~V~sV~~s~---~~L 205 (787)
.+...+ +++++|+-|++++.. +.+++-.. -.++.+++. .+|
T Consensus 249 ~i~ssS---------------------------------yDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl 295 (498)
T KOG4328|consen 249 QIYSSS---------------------------------YDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVL 295 (498)
T ss_pred heeeec---------------------------------cCceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEE
Confidence 222211 347899999987643 33332122 345556644 344
Q ss_pred EEEeCCeEEEEECCCCcee-EEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCcceeccccCCCCCcCC
Q 003907 206 AVGLATQIYCFDALTLENK-FSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSP 284 (787)
Q Consensus 206 aV~~~~~I~iwD~~T~e~l-~tl~t~p~p~~~~~~~~~~~~~~~~lAlspr~LAyas~~~~l~~~g~~s~q~lt~~~~s~ 284 (787)
++..-+...+||.++.... ..++-|... .+.+++.|
T Consensus 296 ~~~~~G~f~~iD~R~~~s~~~~~~lh~kK-------------I~sv~~NP------------------------------ 332 (498)
T KOG4328|consen 296 FGDNVGNFNVIDLRTDGSEYENLRLHKKK-------------ITSVALNP------------------------------ 332 (498)
T ss_pred EeecccceEEEEeecCCccchhhhhhhcc-------------cceeecCC------------------------------
Confidence 4444457888998776531 112222221 23344433
Q ss_pred CcCCCCCceeEeeehhhhhhhhcccceeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECCCCcE---
Q 003907 285 STSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAI--- 361 (787)
Q Consensus 285 s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~--- 361 (787)
... -.+++++.|++++|||++....
T Consensus 333 -------------------------------------------------~~p---~~laT~s~D~T~kIWD~R~l~~K~s 360 (498)
T KOG4328|consen 333 -------------------------------------------------VCP---WFLATASLDQTAKIWDLRQLRGKAS 360 (498)
T ss_pred -------------------------------------------------CCc---hheeecccCcceeeeehhhhcCCCC
Confidence 000 0123456788999999976432
Q ss_pred -EEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEe----cccccccEEE
Q 003907 362 -ISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLH----RGITSATIQD 436 (787)
Q Consensus 362 -v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~----rG~~~a~I~s 436 (787)
.-....|..+|++..|||+|-.|+|.+.|.. |||||..-- +. ....+.... .|.+ -.+..
T Consensus 361 p~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~-IRv~dss~~------sa-------~~~p~~~I~Hn~~t~Rw-lT~fK 425 (498)
T KOG4328|consen 361 PFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNE-IRVFDSSCI------SA-------KDEPLGTIPHNNRTGRW-LTPFK 425 (498)
T ss_pred cceecccccceeeeeEEcCCCCceEeeccCCc-eEEeecccc------cc-------cCCccceeeccCccccc-ccchh
Confidence 2334589999999999998777999999665 999997310 00 001121221 1111 12456
Q ss_pred EEEccCCCEEEEEeCCCeEEEEeCC
Q 003907 437 ICFSHYSQWIAIVSSKGTCHVFVLS 461 (787)
Q Consensus 437 laFSpDg~~LAs~S~dgTVhIwdl~ 461 (787)
.+|.||-.+|+++-.-..|-|||-+
T Consensus 426 A~W~P~~~li~vg~~~r~IDv~~~~ 450 (498)
T KOG4328|consen 426 AAWDPDYNLIVVGRYPRPIDVFDGN 450 (498)
T ss_pred heeCCCccEEEEeccCcceeEEcCC
Confidence 7899999999999998889998754
No 143
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.15 E-value=3.9e-10 Score=124.37 Aligned_cols=227 Identities=20% Similarity=0.225 Sum_probs=138.5
Q ss_pred EEEEeCCCcEEEEEecC--CeEEEEeCCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEcc--ceEEEec
Q 003907 186 EHVLRFRSSVCMVRCSP--RIVAVGLATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP--RWLAYAS 261 (787)
Q Consensus 186 v~tL~f~s~V~sV~~s~--~~LaV~~~~~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~~~~~lAlsp--r~LAyas 261 (787)
+.+|.+-.-|+++.++. +.+-+|..+.|+|||+..-.... |..++.+. ...|+ ...+-|.| |.|-.++
T Consensus 413 ~~tL~HGEvVcAvtIS~~trhVyTgGkgcVKVWdis~pg~k~-----PvsqLdcl--~rdny-iRSckL~pdgrtLivGG 484 (705)
T KOG0639|consen 413 INTLAHGEVVCAVTISNPTRHVYTGGKGCVKVWDISQPGNKS-----PVSQLDCL--NRDNY-IRSCKLLPDGRTLIVGG 484 (705)
T ss_pred hhhhccCcEEEEEEecCCcceeEecCCCeEEEeeccCCCCCC-----cccccccc--Ccccc-eeeeEecCCCceEEecc
Confidence 45555666789999877 78888999999999987543211 11111110 01111 34566666 6676666
Q ss_pred CCceecCcceeccccCCC-CCcCCCcCCCCCceeEeeehhhhhhhhcccceeecccccccCCCCCCCCcccCCccccccc
Q 003907 262 NTLLLSNSGRLSPQNLTP-SGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRH 340 (787)
Q Consensus 262 ~~~~l~~~g~~s~q~lt~-~~~s~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~ 340 (787)
... ....|+...| +.+-. . |.. ..-...++..+++.+.-
T Consensus 485 eas-----tlsiWDLAapTprika-----------------------e----lts------sapaCyALa~spDakvc-- 524 (705)
T KOG0639|consen 485 EAS-----TLSIWDLAAPTPRIKA-----------------------E----LTS------SAPACYALAISPDAKVC-- 524 (705)
T ss_pred ccc-----eeeeeeccCCCcchhh-----------------------h----cCC------cchhhhhhhcCCcccee--
Confidence 521 1123554443 11100 0 000 00011223333333322
Q ss_pred cccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcc----------cCCCCC
Q 003907 341 AGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCM----------RSGSGN 410 (787)
Q Consensus 341 ~~~s~~~dG~V~IwDl~s~~~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~----------~~~~g~ 410 (787)
.....||.|.|||+.+...+.+|++|++.+.||.+++||+.|-|++-|. ++|-||++.... .+..-+
T Consensus 525 --FsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTGGlDn-tvRcWDlregrqlqqhdF~SQIfSLg~c 601 (705)
T KOG0639|consen 525 --FSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGLDN-TVRCWDLREGRQLQQHDFSSQIFSLGYC 601 (705)
T ss_pred --eeeccCCcEEEEEcccceeeecccCCCCCceeEEecCCCceeecCCCcc-ceeehhhhhhhhhhhhhhhhhheecccC
Confidence 2456899999999999999999999999999999999999999999954 599999865210 011111
Q ss_pred CccccCC-------------cceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEeCCCCCCc
Q 003907 411 HKYDWNS-------------SHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGD 466 (787)
Q Consensus 411 ~~~~~~~-------------s~~~l~~l~rG~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~~~gg~ 466 (787)
..-+|-. +....|.+ +.+...|.++.|++-|+|+++.+.|.-+..|.. +||..
T Consensus 602 P~~dWlavGMens~vevlh~skp~kyql--hlheScVLSlKFa~cGkwfvStGkDnlLnawrt-PyGas 667 (705)
T KOG0639|consen 602 PTGDWLAVGMENSNVEVLHTSKPEKYQL--HLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRT-PYGAS 667 (705)
T ss_pred CCccceeeecccCcEEEEecCCccceee--cccccEEEEEEecccCceeeecCchhhhhhccC-ccccc
Confidence 1112211 11122333 234456999999999999999999999999984 55543
No 144
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.15 E-value=5.2e-08 Score=106.53 Aligned_cols=105 Identities=11% Similarity=0.123 Sum_probs=69.4
Q ss_pred CCCceEEEEECCC--C--cEEEEeccC------CCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCcccc
Q 003907 346 DNAGIVVVKDFVT--R--AIISQFKAH------TSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDW 415 (787)
Q Consensus 346 ~~dG~V~IwDl~s--~--~~v~~~~aH------~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~ 415 (787)
..++.|.+||+.. + +.+..+..+ ......+.|+|+|++|+++...+..|.||++... +.
T Consensus 194 ~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~------~~----- 262 (330)
T PRK11028 194 ELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSED------GS----- 262 (330)
T ss_pred cCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCC------CC-----
Confidence 3479999999973 2 234444322 1123468999999999998776678999998531 10
Q ss_pred CCcceEEEEEecccccccEEEEEEccCCCEEEEEeC-CCeEEEEeCCCCCCc
Q 003907 416 NSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSS-KGTCHVFVLSPFGGD 466 (787)
Q Consensus 416 ~~s~~~l~~l~rG~~~a~I~slaFSpDg~~LAs~S~-dgTVhIwdl~~~gg~ 466 (787)
....+.....| .....++|+|||++|+++.. +++|.||+++...+.
T Consensus 263 --~~~~~~~~~~~---~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~~~~g~ 309 (330)
T PRK11028 263 --VLSFEGHQPTE---TQPRGFNIDHSGKYLIAAGQKSHHISVYEIDGETGL 309 (330)
T ss_pred --eEEEeEEEecc---ccCCceEECCCCCEEEEEEccCCcEEEEEEcCCCCc
Confidence 00111222222 12457899999999998885 899999999765443
No 145
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.12 E-value=4e-09 Score=118.72 Aligned_cols=261 Identities=18% Similarity=0.174 Sum_probs=145.1
Q ss_pred CCEEEEEECCCCeEEEEEeCCCcEEEEEecC----CeEEEEeCCeEEEEECCCCcee---------EEEEecCCccc---
Q 003907 172 PTAVRFYSFQSHCYEHVLRFRSSVCMVRCSP----RIVAVGLATQIYCFDALTLENK---------FSVLTYPVPQL--- 235 (787)
Q Consensus 172 p~tVrlWdlktg~~v~tL~f~s~V~sV~~s~----~~LaV~~~~~I~iwD~~T~e~l---------~tl~t~p~p~~--- 235 (787)
+++||||.+.||.++.+..|.+.|.+|+|+| -+|||+.+..+.|-|..-|..+ .+....+.|.+
T Consensus 421 DGtvriWEi~TgRcvr~~~~d~~I~~vaw~P~~~~~vLAvA~~~~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~ 500 (733)
T KOG0650|consen 421 DGTVRIWEIATGRCVRTVQFDSEIRSVAWNPLSDLCVLAVAVGECVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVV 500 (733)
T ss_pred CCcEEEEEeecceEEEEEeecceeEEEEecCCCCceeEEEEecCceEEeCccccchhhhcchhhhhhcCCCccCCcccce
Confidence 4799999999999999999999999999998 4888888888777665444221 11111111100
Q ss_pred --CC----CCccccc------cccceeEEcc--ceEEEec----CCceecCc--ceeccccCC---CCCcCCCcCCCCCc
Q 003907 236 --AG----QGAVGIN------VGYGPMAVGP--RWLAYAS----NTLLLSNS--GRLSPQNLT---PSGVSPSTSPGGSS 292 (787)
Q Consensus 236 --~~----~~~~~~~------~~~~~lAlsp--r~LAyas----~~~~l~~~--g~~s~q~lt---~~~~s~s~sp~~g~ 292 (787)
.. +...++. -....+.+.. +|||..- +..++.+. .+.+...+. +......|.|..-.
T Consensus 501 ~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~ 580 (733)
T KOG0650|consen 501 TWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPY 580 (733)
T ss_pred eechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEEEecccccccCchhhcCCceeEEEecCCCce
Confidence 00 0000000 0112233322 6787742 12222221 111111111 01122234444443
Q ss_pred eeEeeeh-----hhhhhhhcccceeecccccccCCCC-CCCCcccCCccccccccccccCCCceEEEEECCCC-cEEEEe
Q 003907 293 LVARYAM-----EHSKQFAAGLSKTLSKYCQELLPDG-SSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTR-AIISQF 365 (787)
Q Consensus 293 lva~~a~-----d~sk~la~G~~ktls~~~~~l~p~~-s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~-~~v~~~ 365 (787)
+++.-++ |.+++.+ .|+| .++. ..+.++..+ ++-.+.-++.++.+..+|+.-. ++..++
T Consensus 581 lfVaTq~~vRiYdL~kqel---vKkL-------~tg~kwiS~msihp----~GDnli~gs~d~k~~WfDldlsskPyk~l 646 (733)
T KOG0650|consen 581 LFVATQRSVRIYDLSKQEL---VKKL-------LTGSKWISSMSIHP----NGDNLILGSYDKKMCWFDLDLSSKPYKTL 646 (733)
T ss_pred EEEEeccceEEEehhHHHH---HHHH-------hcCCeeeeeeeecC----CCCeEEEecCCCeeEEEEcccCcchhHHh
Confidence 3321111 1111111 0111 1111 111122222 1112345678999999998743 577889
Q ss_pred ccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCcccc--CCcceEEEEEeccccc---ccEEEEEEc
Q 003907 366 KAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDW--NSSHVHLYKLHRGITS---ATIQDICFS 440 (787)
Q Consensus 366 ~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~--~~s~~~l~~l~rG~~~---a~I~slaFS 440 (787)
+-|...|.+++|++.=.++|+||.||+ +.||--+- ..|+ .+-..++..|+ |+.. --|.++.|+
T Consensus 647 r~H~~avr~Va~H~ryPLfas~sdDgt-v~Vfhg~V----------Y~Dl~qnpliVPlK~L~-gH~~~~~~gVLd~~wH 714 (733)
T KOG0650|consen 647 RLHEKAVRSVAFHKRYPLFASGSDDGT-VIVFHGMV----------YNDLLQNPLIVPLKRLR-GHEKTNDLGVLDTIWH 714 (733)
T ss_pred hhhhhhhhhhhhccccceeeeecCCCc-EEEEeeee----------ehhhhcCCceEeeeecc-CceeecccceEeeccc
Confidence 999999999999999999999999887 66774221 1111 12224555554 4321 138899999
Q ss_pred cCCCEEEEEeCCCeEEEE
Q 003907 441 HYSQWIAIVSSKGTCHVF 458 (787)
Q Consensus 441 pDg~~LAs~S~dgTVhIw 458 (787)
|.--||.+++.||||++|
T Consensus 715 P~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 715 PRQPWLFSAGADGTIRLF 732 (733)
T ss_pred CCCceEEecCCCceEEee
Confidence 999999999999999998
No 146
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.12 E-value=7.1e-09 Score=113.97 Aligned_cols=94 Identities=17% Similarity=0.339 Sum_probs=68.9
Q ss_pred CCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEE-
Q 003907 347 NAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKL- 425 (787)
Q Consensus 347 ~dG~V~IwDl~s~~~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l- 425 (787)
..|.|.|....+++.+..|+- .+.|+.++|+.||+.|..++.+| .|.|||+... .+++++
T Consensus 323 ~~G~I~lLhakT~eli~s~Ki-eG~v~~~~fsSdsk~l~~~~~~G-eV~v~nl~~~-----------------~~~~rf~ 383 (514)
T KOG2055|consen 323 NNGHIHLLHAKTKELITSFKI-EGVVSDFTFSSDSKELLASGGTG-EVYVWNLRQN-----------------SCLHRFV 383 (514)
T ss_pred cCceEEeehhhhhhhhheeee-ccEEeeEEEecCCcEEEEEcCCc-eEEEEecCCc-----------------ceEEEEe
Confidence 345555555566666666653 36789999999999998888878 4999999531 233333
Q ss_pred -ecccccccEEEEEEccCCCEEEEEeCCCeEEEEeCCC
Q 003907 426 -HRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSP 462 (787)
Q Consensus 426 -~rG~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~~ 462 (787)
..+.+ =+++|.|++|+|||+||+.|.|.|||.+.
T Consensus 384 D~G~v~---gts~~~S~ng~ylA~GS~~GiVNIYd~~s 418 (514)
T KOG2055|consen 384 DDGSVH---GTSLCISLNGSYLATGSDSGIVNIYDGNS 418 (514)
T ss_pred ecCccc---eeeeeecCCCceEEeccCcceEEEeccch
Confidence 22222 26788999999999999999999999765
No 147
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.12 E-value=2.2e-08 Score=114.37 Aligned_cols=248 Identities=13% Similarity=0.122 Sum_probs=164.6
Q ss_pred CCCCCCCcEEEEEEeeccCCCCCCCeEEEEEecCcEEEEEccCCCceeEeeeeccCcEEEEEEecCCCCCCCCCCccccC
Q 003907 51 ASEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNGFQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLH 130 (787)
Q Consensus 51 ~~~~~~~~v~wa~Fd~l~~~~~~~~~vL~lG~~~G~qVWdv~~~~~~~ells~~dg~V~~v~~lP~P~~~~~~d~F~~sr 130 (787)
+.+.+-|.+.|+ + .++++.+|..+-+.-||+.+ .+-...+....|++..+++.|. .
T Consensus 67 ~~drsIE~L~W~--e--------~~RLFS~g~sg~i~EwDl~~-lk~~~~~d~~gg~IWsiai~p~-------------~ 122 (691)
T KOG2048|consen 67 PEDRSIESLAWA--E--------GGRLFSSGLSGSITEWDLHT-LKQKYNIDSNGGAIWSIAINPE-------------N 122 (691)
T ss_pred CCCCceeeEEEc--c--------CCeEEeecCCceEEEEeccc-CceeEEecCCCcceeEEEeCCc-------------c
Confidence 344466778888 2 36788888888899999965 4444455566789999998863 1
Q ss_pred cEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeC---CCcEEEEEecCC--eE
Q 003907 131 PFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRF---RSSVCMVRCSPR--IV 205 (787)
Q Consensus 131 pLLavV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~v~tL~f---~s~V~sV~~s~~--~L 205 (787)
..++ |+||+ +.+.+.+...++......| .++|++|.+++. .|
T Consensus 123 ~~l~-Igcdd--------------------------------Gvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i 169 (691)
T KOG2048|consen 123 TILA-IGCDD--------------------------------GVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKI 169 (691)
T ss_pred ceEE-eecCC--------------------------------ceEEEEecCCceEEEEeecccccceEEEEEecCCccEE
Confidence 2455 45553 3566666666665554444 379999999993 36
Q ss_pred EEEeCC-eEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCcceeccccCCCCCcCC
Q 003907 206 AVGLAT-QIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSP 284 (787)
Q Consensus 206 aV~~~~-~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~~~~~lAlspr~LAyas~~~~l~~~g~~s~q~lt~~~~s~ 284 (787)
|.|..+ .|+|||+.+++.++.+.-.-. +... +-..+.++- .|-.
T Consensus 170 ~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d----~l~k-----~~~~iVWSv---~~Lr----------------------- 214 (691)
T KOG2048|consen 170 AGGSIDGVIRIWDVKSGQTLHIITMQLD----RLSK-----REPTIVWSV---LFLR----------------------- 214 (691)
T ss_pred EecccCceEEEEEcCCCceEEEeeeccc----cccc-----CCceEEEEE---EEee-----------------------
Confidence 776655 599999999987773321000 0000 000111110 0000
Q ss_pred CcCCCCCceeEeeehhhhhhhhcccceeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECCCCcEEEE
Q 003907 285 STSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQ 364 (787)
Q Consensus 285 s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~v~~ 364 (787)
| .++++++..|+|++||...++++..
T Consensus 215 ---------------d---------------------------------------~tI~sgDS~G~V~FWd~~~gTLiqS 240 (691)
T KOG2048|consen 215 ---------------D---------------------------------------STIASGDSAGTVTFWDSIFGTLIQS 240 (691)
T ss_pred ---------------c---------------------------------------CcEEEecCCceEEEEcccCcchhhh
Confidence 0 1234667889999999999999999
Q ss_pred eccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCC
Q 003907 365 FKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQ 444 (787)
Q Consensus 365 ~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~ 444 (787)
+..|...|.||+-++++.++.+|+.|+++|++... +. +. .+.. ..+|-.+...|.+++..++
T Consensus 241 ~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~-~~------~~--------~wv~-~~~r~~h~hdvrs~av~~~-- 302 (691)
T KOG2048|consen 241 HSCHDADVLALAVADNEDRVFSAGVDPKIIQYSLT-TN------KS--------EWVI-NSRRDLHAHDVRSMAVIEN-- 302 (691)
T ss_pred hhhhhcceeEEEEcCCCCeEEEccCCCceEEEEec-CC------cc--------ceee-eccccCCcccceeeeeecc--
Confidence 99999999999999999999999999987766554 21 10 0112 2233334456999999888
Q ss_pred EEEEEeCCCeEEEEeCCC
Q 003907 445 WIAIVSSKGTCHVFVLSP 462 (787)
Q Consensus 445 ~LAs~S~dgTVhIwdl~~ 462 (787)
.|.+|+.|.++.+=....
T Consensus 303 ~l~sgG~d~~l~i~~s~~ 320 (691)
T KOG2048|consen 303 ALISGGRDFTLAICSSRE 320 (691)
T ss_pred eEEecceeeEEEEccccc
Confidence 899999999888755443
No 148
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.07 E-value=2.9e-09 Score=117.12 Aligned_cols=244 Identities=10% Similarity=0.047 Sum_probs=145.8
Q ss_pred CEEEEEECCCCeEEE-EEeCCCcEEEEEecC--CeEEEE-eCCeEEEEECCCCceeEEEEecCCcccCCCCccccccccc
Q 003907 173 TAVRFYSFQSHCYEH-VLRFRSSVCMVRCSP--RIVAVG-LATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYG 248 (787)
Q Consensus 173 ~tVrlWdlktg~~v~-tL~f~s~V~sV~~s~--~~LaV~-~~~~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~~~~ 248 (787)
..|.+|.+......+ .+..+++|.++..++ .+|+.+ -.++||||.+.||+++..+..|-.+ ..
T Consensus 61 p~l~vw~i~k~~~~~q~~v~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~-------------IT 127 (476)
T KOG0646|consen 61 PLLHVWEILKKDQVVQYIVLPGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQS-------------IT 127 (476)
T ss_pred ccccccccCchhhhhhhcccccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccc-------------ee
Confidence 378999997766555 445788999999987 566666 5788999999999998888665432 12
Q ss_pred eeEEcc--ceEEEecCCceecCcceeccccCCCCCcCCCcCCCCC-ceeEeeehhhhhhhhcccceeecccccccCCCCC
Q 003907 249 PMAVGP--RWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGS-SLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGS 325 (787)
Q Consensus 249 ~lAlsp--r~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~sp~~g-~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s 325 (787)
.+-++- .++-+++.+..+ ..|+...- .++.+. ..... ..|+.+....+
T Consensus 128 cL~fs~dgs~iiTgskDg~V-----~vW~l~~l------v~a~~~~~~~p~--------------~~f~~HtlsIT---- 178 (476)
T KOG0646|consen 128 CLKFSDDGSHIITGSKDGAV-----LVWLLTDL------VSADNDHSVKPL--------------HIFSDHTLSIT---- 178 (476)
T ss_pred EEEEeCCCcEEEecCCCccE-----EEEEEEee------cccccCCCccce--------------eeeccCcceeE----
Confidence 333332 555566555311 12322110 000000 00000 11221111100
Q ss_pred CCCcccCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcc-
Q 003907 326 SSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCM- 404 (787)
Q Consensus 326 ~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~- 404 (787)
.+...+++ . ...+.+++.|.++++||+..+.++.++. -..+|.|++.+|-++.+..|+.+|. |-+.++.....
T Consensus 179 --Dl~ig~Gg-~-~~rl~TaS~D~t~k~wdlS~g~LLlti~-fp~si~av~lDpae~~~yiGt~~G~-I~~~~~~~~~~~ 252 (476)
T KOG0646|consen 179 --DLQIGSGG-T-NARLYTASEDRTIKLWDLSLGVLLLTIT-FPSSIKAVALDPAERVVYIGTEEGK-IFQNLLFKLSGQ 252 (476)
T ss_pred --EEEecCCC-c-cceEEEecCCceEEEEEeccceeeEEEe-cCCcceeEEEcccccEEEecCCcce-EEeeehhcCCcc
Confidence 00000000 0 0123467899999999999998888764 3578999999999999999999886 67766632210
Q ss_pred cCCCCCCccccCCcceEEEEEeccccc-ccEEEEEEccCCCEEEEEeCCCeEEEEeCCCCCCcc
Q 003907 405 RSGSGNHKYDWNSSHVHLYKLHRGITS-ATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDS 467 (787)
Q Consensus 405 ~~~~g~~~~~~~~s~~~l~~l~rG~~~-a~I~slaFSpDg~~LAs~S~dgTVhIwdl~~~gg~~ 467 (787)
+.+......+ ........+. |+.. ..|+|++.|-||..|++|+.||+|.|||+.......
T Consensus 253 ~~~v~~k~~~--~~~t~~~~~~-Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iR 313 (476)
T KOG0646|consen 253 SAGVNQKGRH--EENTQINVLV-GHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIR 313 (476)
T ss_pred cccccccccc--cccceeeeec-cccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHHHHH
Confidence 0000000000 1112333343 3333 479999999999999999999999999997654433
No 149
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.07 E-value=4e-08 Score=111.94 Aligned_cols=78 Identities=17% Similarity=0.123 Sum_probs=52.2
Q ss_pred EEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCC
Q 003907 373 SALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSK 452 (787)
Q Consensus 373 saLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~LAs~S~d 452 (787)
...+|+|||++|+.++. +. +.+||+.. | ....+..+. ...+++|+|||++|+.++.+
T Consensus 336 ~~~~~SpDG~~ia~~~~-~~-i~~~Dl~~-------g-----------~~~~lt~~~---~~~~~~~sPdG~~i~~~s~~ 392 (429)
T PRK01742 336 YSAQISADGKTLVMING-DN-VVKQDLTS-------G-----------STEVLSSTF---LDESPSISPNGIMIIYSSTQ 392 (429)
T ss_pred CCccCCCCCCEEEEEcC-CC-EEEEECCC-------C-----------CeEEecCCC---CCCCceECCCCCEEEEEEcC
Confidence 45789999999998887 44 55689853 2 111222111 23568899999999999999
Q ss_pred CeEEEEeCCCCCC--cccccccc
Q 003907 453 GTCHVFVLSPFGG--DSGFQTLS 473 (787)
Q Consensus 453 gTVhIwdl~~~gg--~~~~~~H~ 473 (787)
+.+.+|.+....| ...+..|.
T Consensus 393 g~~~~l~~~~~~G~~~~~l~~~~ 415 (429)
T PRK01742 393 GLGKVLQLVSADGRFKARLPGSD 415 (429)
T ss_pred CCceEEEEEECCCCceEEccCCC
Confidence 9999888743322 23444454
No 150
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.07 E-value=3.8e-09 Score=112.14 Aligned_cols=101 Identities=18% Similarity=0.265 Sum_probs=85.4
Q ss_pred cCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCC-CEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEE
Q 003907 345 MDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSG-TLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLY 423 (787)
Q Consensus 345 ~~~dG~V~IwDl~s~~~v~~~~aH~~pIsaLaFSpdG-~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~ 423 (787)
++.-|.|+|.|+.+++....+.+|...|+.|.|.|+. ++|++||. |+.||+|+++.. .++.
T Consensus 111 ~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~Sk-D~svRlwnI~~~-----------------~Cv~ 172 (385)
T KOG1034|consen 111 GGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASK-DHSVRLWNIQTD-----------------VCVA 172 (385)
T ss_pred ecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecC-CceEEEEeccCC-----------------eEEE
Confidence 3467899999999999999999999999999999964 68889998 778999999752 4565
Q ss_pred EEec-ccccccEEEEEEccCCCEEEEEeCCCeEEEEeCCCC
Q 003907 424 KLHR-GITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPF 463 (787)
Q Consensus 424 ~l~r-G~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~~~ 463 (787)
.+-. +-|...|.++.|++||.+||+++.|.++++|+++..
T Consensus 173 VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~ 213 (385)
T KOG1034|consen 173 VFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVK 213 (385)
T ss_pred EecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChh
Confidence 5521 114467999999999999999999999999999843
No 151
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.07 E-value=7.9e-09 Score=113.79 Aligned_cols=197 Identities=17% Similarity=0.208 Sum_probs=129.1
Q ss_pred CCCeEEEEEecCc-EEEEEccCCCceeEeeeeccCcEEEEEEecCCCCCCCCCCccccCcEEEEEEcCCCCCCCCCCCcC
Q 003907 73 VFKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRS 151 (787)
Q Consensus 73 ~~~~vL~lG~~~G-~qVWdv~~~~~~~ells~~dg~V~~v~~lP~P~~~~~~d~F~~srpLLavV~~d~~~~~~~~~~~~ 151 (787)
..+..|+.|+-.| +-+|.+ .+|++..+++.|=-+|.++++.-+ ++ ++. +++.
T Consensus 91 n~G~~l~ag~i~g~lYlWel-ssG~LL~v~~aHYQ~ITcL~fs~d-----------gs--~ii--Tgsk----------- 143 (476)
T KOG0646|consen 91 NLGYFLLAGTISGNLYLWEL-SSGILLNVLSAHYQSITCLKFSDD-----------GS--HII--TGSK----------- 143 (476)
T ss_pred CCceEEEeecccCcEEEEEe-ccccHHHHHHhhccceeEEEEeCC-----------Cc--EEE--ecCC-----------
Confidence 3578888885555 999999 468898899999899999998743 22 442 3321
Q ss_pred CCCCcccCCcCCCCCCCCCCCCEEEEEECC---------CCeEEEEEeCCC-cEEEEEecC-----CeEEEEeCCeEEEE
Q 003907 152 HLGGVRDGMMDSQSGNCVNSPTAVRFYSFQ---------SHCYEHVLRFRS-SVCMVRCSP-----RIVAVGLATQIYCF 216 (787)
Q Consensus 152 ~~~~~r~g~~~~~~~~~~~~p~tVrlWdlk---------tg~~v~tL~f~s-~V~sV~~s~-----~~LaV~~~~~I~iw 216 (787)
++.|.+|++- +-+.++.+..|. +|.++.+.. +++.++.|..|+||
T Consensus 144 --------------------Dg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~w 203 (476)
T KOG0646|consen 144 --------------------DGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLW 203 (476)
T ss_pred --------------------CccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEE
Confidence 3568888652 223455554444 788887643 56667888899999
Q ss_pred ECCCCceeEEEEecCCcccCCCCccccccccceeEEcc-ceEEEecC-CceecCcceeccccCCCCCcCCCcCCCCCcee
Q 003907 217 DALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP-RWLAYASN-TLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLV 294 (787)
Q Consensus 217 D~~T~e~l~tl~t~p~p~~~~~~~~~~~~~~~~lAlsp-r~LAyas~-~~~l~~~g~~s~q~lt~~~~s~s~sp~~g~lv 294 (787)
|+..+.++.++.. |.+ ...+++.| ....|.|. ... + ++.+-
T Consensus 204 dlS~g~LLlti~f-p~s-------------i~av~lDpae~~~yiGt~~G~------I-~~~~~---------------- 246 (476)
T KOG0646|consen 204 DLSLGVLLLTITF-PSS-------------IKAVALDPAERVVYIGTEEGK------I-FQNLL---------------- 246 (476)
T ss_pred EeccceeeEEEec-CCc-------------ceeEEEcccccEEEecCCcce------E-Eeeeh----------------
Confidence 9999999888875 221 35688888 34445443 211 1 11000
Q ss_pred EeeehhhhhhhhcccceeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECCCCcEEEEeccCCC--Ce
Q 003907 295 ARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTS--PI 372 (787)
Q Consensus 295 a~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~v~~~~aH~~--pI 372 (787)
-+ +++ . ..+=..+.++. .+..+..+.+|.. +|
T Consensus 247 ----------------~~--------~~~-----------~----------~~~v~~k~~~~-~~t~~~~~~Gh~~~~~I 280 (476)
T KOG0646|consen 247 ----------------FK--------LSG-----------Q----------SAGVNQKGRHE-ENTQINVLVGHENESAI 280 (476)
T ss_pred ----------------hc--------CCc-----------c----------ccccccccccc-ccceeeeeccccCCcce
Confidence 00 000 0 00000222222 2455677889988 99
Q ss_pred EEEEECCCCCEEEEEEcCCCEEEEEeCC
Q 003907 373 SALCFDPSGTLLVTASVYGNNINIFRIM 400 (787)
Q Consensus 373 saLaFSpdG~lLATaS~dG~~IrVWdi~ 400 (787)
+||+.+-||++|++|+.||+ +.|||+.
T Consensus 281 TcLais~DgtlLlSGd~dg~-VcvWdi~ 307 (476)
T KOG0646|consen 281 TCLAISTDGTLLLSGDEDGK-VCVWDIY 307 (476)
T ss_pred eEEEEecCccEEEeeCCCCC-EEEEecc
Confidence 99999999999999999887 8999984
No 152
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.06 E-value=3.6e-09 Score=116.18 Aligned_cols=100 Identities=23% Similarity=0.288 Sum_probs=76.8
Q ss_pred CCCceEEEEECCCCcE-EEEeccCCCCeEEEEECCC-CCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEE
Q 003907 346 DNAGIVVVKDFVTRAI-ISQFKAHTSPISALCFDPS-GTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLY 423 (787)
Q Consensus 346 ~~dG~V~IwDl~s~~~-v~~~~aH~~pIsaLaFSpd-G~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~ 423 (787)
+.=|...+||++++.. ...++-|...|..|+|+|- -.+|||||.|++ .+|||++.. .+. .+ --++
T Consensus 298 ~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T-~kIWD~R~l-----~~K------~s-p~ls 364 (498)
T KOG4328|consen 298 DNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLATASLDQT-AKIWDLRQL-----RGK------AS-PFLS 364 (498)
T ss_pred ecccceEEEEeecCCccchhhhhhhcccceeecCCCCchheeecccCcc-eeeeehhhh-----cCC------CC-ccee
Confidence 3446888999988654 7778889999999999994 568999999775 899999642 121 11 0233
Q ss_pred EEecccccccEEEEEEccCCCEEEEEeCCCeEEEEeCC
Q 003907 424 KLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLS 461 (787)
Q Consensus 424 ~l~rG~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~ 461 (787)
.+ .|...|.+..|||+|--|++.+.|.+|+|||..
T Consensus 365 t~---~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss 399 (498)
T KOG4328|consen 365 TL---PHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSS 399 (498)
T ss_pred cc---cccceeeeeEEcCCCCceEeeccCCceEEeecc
Confidence 33 234469999999998889999999999999985
No 153
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.06 E-value=1.9e-08 Score=114.95 Aligned_cols=92 Identities=20% Similarity=0.234 Sum_probs=70.2
Q ss_pred CCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEE
Q 003907 370 SPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIV 449 (787)
Q Consensus 370 ~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~LAs~ 449 (787)
..+..|+.+|+.++++|+.. ++.|||||+.. |. ..+.++-.+++. +....+...|.|.|||++
T Consensus 597 tTlYDm~Vdp~~k~v~t~cQ-Drnirif~i~s-------gK--------q~k~FKgs~~~e-G~lIKv~lDPSgiY~atS 659 (1080)
T KOG1408|consen 597 TTLYDMAVDPTSKLVVTVCQ-DRNIRIFDIES-------GK--------QVKSFKGSRDHE-GDLIKVILDPSGIYLATS 659 (1080)
T ss_pred ceEEEeeeCCCcceEEEEec-ccceEEEeccc-------cc--------eeeeecccccCC-CceEEEEECCCccEEEEe
Confidence 46889999999999999999 56699999964 31 122333233322 346668999999999999
Q ss_pred eCCCeEEEEeCCCCCCccccccccCCCCC
Q 003907 450 SSKGTCHVFVLSPFGGDSGFQTLSSQGGD 478 (787)
Q Consensus 450 S~dgTVhIwdl~~~gg~~~~~~H~~~~~~ 478 (787)
..|.|+-+||....++.....+|..-+.+
T Consensus 660 csdktl~~~Df~sgEcvA~m~GHsE~VTG 688 (1080)
T KOG1408|consen 660 CSDKTLCFVDFVSGECVAQMTGHSEAVTG 688 (1080)
T ss_pred ecCCceEEEEeccchhhhhhcCcchheee
Confidence 99999999999887777777888655443
No 154
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.06 E-value=4.2e-07 Score=96.26 Aligned_cols=179 Identities=22% Similarity=0.293 Sum_probs=125.4
Q ss_pred CCEEEEEECCC-CeEEEEEeCC-CcEEEEEecC--CeEEEEe--CCeEEEEECCCCceeEEEEecCCcccCCCCcccccc
Q 003907 172 PTAVRFYSFQS-HCYEHVLRFR-SSVCMVRCSP--RIVAVGL--ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINV 245 (787)
Q Consensus 172 p~tVrlWdlkt-g~~v~tL~f~-s~V~sV~~s~--~~LaV~~--~~~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~ 245 (787)
++++++||... ...+..+..+ ..|..+.+.+ +.++++. +..+++|++.+.+.+..+..|..+
T Consensus 133 d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------ 200 (466)
T COG2319 133 DGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDP------------ 200 (466)
T ss_pred CccEEEEEecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCc------------
Confidence 36899999998 7777777765 5888899988 4566654 678999999986666666543221
Q ss_pred ccceeEEccceEEEecCCceecCcceeccccCCCCCcCCCcCCCCCceeEeeehhhhhhhhcccceeecccccccCCCCC
Q 003907 246 GYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGS 325 (787)
Q Consensus 246 ~~~~lAlspr~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s 325 (787)
...+++ .... ..
T Consensus 201 -v~~~~~-------~~~~---------------------------~~--------------------------------- 212 (466)
T COG2319 201 -VSSLAF-------SPDG---------------------------GL--------------------------------- 212 (466)
T ss_pred -eEEEEE-------cCCc---------------------------ce---------------------------------
Confidence 111222 1110 00
Q ss_pred CCCcccCCccccccccccccCCCceEEEEECCCCcEEE-EeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcc
Q 003907 326 SSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIIS-QFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCM 404 (787)
Q Consensus 326 ~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~v~-~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~ 404 (787)
....+..++.|++||...+..+. .+..|.... ...|+|++.++++++.++. +++|++...
T Consensus 213 ---------------~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~-~~~~~~~~~-- 273 (466)
T COG2319 213 ---------------LIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGT-IRLWDLRSS-- 273 (466)
T ss_pred ---------------EEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecCCCc-EEEeeecCC--
Confidence 00112468889999999888888 689998885 4489999999998888665 999998542
Q ss_pred cCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEeCCCCCC
Q 003907 405 RSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGG 465 (787)
Q Consensus 405 ~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~~~gg 465 (787)
. ..+..+ .++ ...|.++.|+|++..+++++.|+++++|++.....
T Consensus 274 ----~----------~~~~~~-~~~-~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 318 (466)
T COG2319 274 ----S----------SLLRTL-SGH-SSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKL 318 (466)
T ss_pred ----C----------cEEEEE-ecC-CccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCce
Confidence 1 123333 232 45799999999999999999999999998776543
No 155
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.03 E-value=1.4e-08 Score=107.90 Aligned_cols=100 Identities=21% Similarity=0.311 Sum_probs=75.9
Q ss_pred EEEEEecCc-EEEEEccCCCceeEeeeeccCcEEEEEEecCCCCCCCCCCccccCcEEEEEEcCCCCCCCCCCCcCCCCC
Q 003907 77 VLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGG 155 (787)
Q Consensus 77 vL~lG~~~G-~qVWdv~~~~~~~ells~~dg~V~~v~~lP~P~~~~~~d~F~~srpLLavV~~d~~~~~~~~~~~~~~~~ 155 (787)
+|++|..-| |+|.|+. .+++..-+-.|.+.|..+++.|. +|-|++ ++.
T Consensus 107 ~la~~G~~GvIrVid~~-~~~~~~~~~ghG~sINeik~~p~-------------~~qlvl-s~S---------------- 155 (385)
T KOG1034|consen 107 FLAAGGYLGVIRVIDVV-SGQCSKNYRGHGGSINEIKFHPD-------------RPQLVL-SAS---------------- 155 (385)
T ss_pred eEEeecceeEEEEEecc-hhhhccceeccCccchhhhcCCC-------------CCcEEE-Eec----------------
Confidence 455544445 8999995 47788888899999999998763 444544 321
Q ss_pred cccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEe----CCCcEEEEEecC--CeEEE-EeCCeEEEEECCCCc
Q 003907 156 VRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLR----FRSSVCMVRCSP--RIVAV-GLATQIYCFDALTLE 222 (787)
Q Consensus 156 ~r~g~~~~~~~~~~~~p~tVrlWdlktg~~v~tL~----f~s~V~sV~~s~--~~LaV-~~~~~I~iwD~~T~e 222 (787)
.+..||+||.++..++..+- ++..|++|+++. ++|+. |.|.+|++|++.+-+
T Consensus 156 ---------------kD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~ 214 (385)
T KOG1034|consen 156 ---------------KDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKE 214 (385)
T ss_pred ---------------CCceEEEEeccCCeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhH
Confidence 24689999999999999985 457999999987 45654 678899999988544
No 156
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.00 E-value=4.4e-08 Score=111.94 Aligned_cols=189 Identities=19% Similarity=0.245 Sum_probs=125.3
Q ss_pred CEEEEEECCCCeE-EEEEeC--CCcEEEEEecC--CeEEEEeCCeEEEEECCCCceeEEEEecCCcccCCCCcccccccc
Q 003907 173 TAVRFYSFQSHCY-EHVLRF--RSSVCMVRCSP--RIVAVGLATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGY 247 (787)
Q Consensus 173 ~tVrlWdlktg~~-v~tL~f--~s~V~sV~~s~--~~LaV~~~~~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~~~ 247 (787)
+.|.||++..+=+ ..++.. .+.|-+++|.. +++.+++.+.|.-||+.+++.++.+.....+ .
T Consensus 47 g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e~~RLFS~g~sg~i~EwDl~~lk~~~~~d~~gg~-------------I 113 (691)
T KOG2048|consen 47 GNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAEGGRLFSSGLSGSITEWDLHTLKQKYNIDSNGGA-------------I 113 (691)
T ss_pred CcEEEEccCCCceeeEEEecCCCCceeeEEEccCCeEEeecCCceEEEEecccCceeEEecCCCcc-------------e
Confidence 5799999987532 233333 35899999984 6777788999999999999987776532221 2
Q ss_pred ceeEEccceEEEecCCceecCcceeccccCCCCCcCCCcCCCCCceeEeeehhhhhhhhcccceeecccccccCCCCCCC
Q 003907 248 GPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSS 327 (787)
Q Consensus 248 ~~lAlspr~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~ 327 (787)
..+|+.| . +..
T Consensus 114 Wsiai~p-------~---------------------------~~~----------------------------------- 124 (691)
T KOG2048|consen 114 WSIAINP-------E---------------------------NTI----------------------------------- 124 (691)
T ss_pred eEEEeCC-------c---------------------------cce-----------------------------------
Confidence 3344432 0 000
Q ss_pred CcccCCccccccccccccCCCceEEEEECCCCcEE--EEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCccc
Q 003907 328 PVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAII--SQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMR 405 (787)
Q Consensus 328 ~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~v--~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~ 405 (787)
.+-+..||.+..++...++.. ..|...++.|.+|+|+|+|+.||+|+.|| .||+||+..
T Consensus 125 --------------l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg-~Iriwd~~~---- 185 (691)
T KOG2048|consen 125 --------------LAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDG-VIRIWDVKS---- 185 (691)
T ss_pred --------------EEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCc-eEEEEEcCC----
Confidence 011235665555565555432 23445578999999999999999999966 599999864
Q ss_pred CCCCCCccccCCcceE-----EEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEeCCCCCCccccccccCC
Q 003907 406 SGSGNHKYDWNSSHVH-----LYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQTLSSQ 475 (787)
Q Consensus 406 ~~~g~~~~~~~~s~~~-----l~~l~rG~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~~~gg~~~~~~H~~~ 475 (787)
|. ..+ +-.+.++ ...-|+++.|=.|+ .|++|.+.|||.+||-....-...+..|...
T Consensus 186 ---~~--------t~~~~~~~~d~l~k~-~~~iVWSv~~Lrd~-tI~sgDS~G~V~FWd~~~gTLiqS~~~h~ad 247 (691)
T KOG2048|consen 186 ---GQ--------TLHIITMQLDRLSKR-EPTIVWSVLFLRDS-TIASGDSAGTVTFWDSIFGTLIQSHSCHDAD 247 (691)
T ss_pred ---Cc--------eEEEeeecccccccC-CceEEEEEEEeecC-cEEEecCCceEEEEcccCcchhhhhhhhhcc
Confidence 21 022 1222222 22358999998887 5899999999999998765555556666544
No 157
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.98 E-value=4.2e-09 Score=108.09 Aligned_cols=100 Identities=19% Similarity=0.299 Sum_probs=73.4
Q ss_pred cCCCceEEEEECCCC---cEEEEeccCCCCeEEEEECCC---C-----------CEEEEEEcCCCEEEEEeCCCCcccCC
Q 003907 345 MDNAGIVVVKDFVTR---AIISQFKAHTSPISALCFDPS---G-----------TLLVTASVYGNNINIFRIMPSCMRSG 407 (787)
Q Consensus 345 ~~~dG~V~IwDl~s~---~~v~~~~aH~~pIsaLaFSpd---G-----------~lLATaS~dG~~IrVWdi~~~~~~~~ 407 (787)
++.||.|.|.++.+. ..-....+|+-.|+++++.|- | +.||||+. |+.|+||+...
T Consensus 122 asSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGc-Dn~VkiW~~~~------ 194 (299)
T KOG1332|consen 122 ASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGC-DNLVKIWKFDS------ 194 (299)
T ss_pred eeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccccccCcccccceeeccCC-ccceeeeecCC------
Confidence 456777777776654 123345789999999999996 6 67999999 56799999743
Q ss_pred CCCCccccCCcceEEEEEecccccccEEEEEEccCC----CEEEEEeCCCeEEEEeCCC
Q 003907 408 SGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYS----QWIAIVSSKGTCHVFVLSP 462 (787)
Q Consensus 408 ~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg----~~LAs~S~dgTVhIwdl~~ 462 (787)
+. ..+-...+| |...|.++||.|.- .+||++|.||+|.||....
T Consensus 195 -~~---------w~~e~~l~~-H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~ 242 (299)
T KOG1332|consen 195 -DS---------WKLERTLEG-HKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDE 242 (299)
T ss_pred -cc---------hhhhhhhhh-cchhhhhhhhccccCCCceeeEEecCCCcEEEEEecC
Confidence 10 222222244 34579999999974 5799999999999998874
No 158
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=98.97 E-value=4.3e-08 Score=102.70 Aligned_cols=246 Identities=15% Similarity=0.201 Sum_probs=150.7
Q ss_pred CCeEEEEEec--------CcEEEEEccCCCce-----eEeeee----ccCcEEEEEEecCCCCCCCCCCccccCcEEEEE
Q 003907 74 FKQVLLLGYQ--------NGFQVLDVEDASNF-----NELVSK----RDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVV 136 (787)
Q Consensus 74 ~~~vL~lG~~--------~G~qVWdv~~~~~~-----~ells~----~dg~V~~v~~lP~P~~~~~~d~F~~srpLLavV 136 (787)
++++|++.|. .+.-||.+...-+- .|.+.. +-|.|.||++-|+. .+ +..+
T Consensus 75 d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns----------~k--lasm- 141 (370)
T KOG1007|consen 75 DQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNS----------DK--LASM- 141 (370)
T ss_pred CCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCC----------Ce--eEEe-
Confidence 5789999988 35789999553222 233333 33789999999852 12 4322
Q ss_pred EcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeE-EEEEeCC------CcEEEEEecC----CeE
Q 003907 137 AGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCY-EHVLRFR------SSVCMVRCSP----RIV 205 (787)
Q Consensus 137 ~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~-v~tL~f~------s~V~sV~~s~----~~L 205 (787)
. .+.|.||++..+.. +.++.-+ ..-.+=+++| +.+
T Consensus 142 ~----------------------------------dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv 187 (370)
T KOG1007|consen 142 D----------------------------------DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQV 187 (370)
T ss_pred c----------------------------------cCceEEEEcccCcchheeecccccccccceecccccCCCCccceE
Confidence 1 25799999987765 5555322 2345556777 688
Q ss_pred EEEeCCeEEEEECCCCceeEEEEe-cCCcccCCCCccccccccceeEEccceEEEecCCceecCcceeccccCCCCCcCC
Q 003907 206 AVGLATQIYCFDALTLENKFSVLT-YPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSP 284 (787)
Q Consensus 206 aV~~~~~I~iwD~~T~e~l~tl~t-~p~p~~~~~~~~~~~~~~~~lAlspr~LAyas~~~~l~~~g~~s~q~lt~~~~s~ 284 (787)
++..+.++.+||++|+++...|.. |-.. +..+.+.| +.
T Consensus 188 ~tt~d~tl~~~D~RT~~~~~sI~dAHgq~-------------vrdlDfNp-------nk--------------------- 226 (370)
T KOG1007|consen 188 ATTSDSTLQFWDLRTMKKNNSIEDAHGQR-------------VRDLDFNP-------NK--------------------- 226 (370)
T ss_pred EEeCCCcEEEEEccchhhhcchhhhhcce-------------eeeccCCC-------Cc---------------------
Confidence 999899999999999987776653 2110 01111111 00
Q ss_pred CcCCCCCceeEeeehhhhhhhhcccceeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECCC-CcEEE
Q 003907 285 STSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVT-RAIIS 363 (787)
Q Consensus 285 s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s-~~~v~ 363 (787)
. -.+++++.||.|+|||.+. ..++.
T Consensus 227 ---------------------------------------------------q---~~lvt~gDdgyvriWD~R~tk~pv~ 252 (370)
T KOG1007|consen 227 ---------------------------------------------------Q---HILVTCGDDGYVRIWDTRKTKFPVQ 252 (370)
T ss_pred ---------------------------------------------------e---EEEEEcCCCccEEEEeccCCCcccc
Confidence 0 0123556789999999976 45889
Q ss_pred EeccCCCCeEEEEECCC-CCEEEEEEcCCCEEEEEeCCCCcccC--CCCCCcccc--CCcceEEEEEecc------cccc
Q 003907 364 QFKAHTSPISALCFDPS-GTLLVTASVYGNNINIFRIMPSCMRS--GSGNHKYDW--NSSHVHLYKLHRG------ITSA 432 (787)
Q Consensus 364 ~~~aH~~pIsaLaFSpd-G~lLATaS~dG~~IrVWdi~~~~~~~--~~g~~~~~~--~~s~~~l~~l~rG------~~~a 432 (787)
.+.+|...|.++.|+|. ..+++|++.|- .+.+|....-.+.. ..+....+. ..+.++..-|.-| .+-.
T Consensus 253 el~~HsHWvW~VRfn~~hdqLiLs~~SDs-~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehED 331 (370)
T KOG1007|consen 253 ELPGHSHWVWAVRFNPEHDQLILSGGSDS-AVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHED 331 (370)
T ss_pred ccCCCceEEEEEEecCccceEEEecCCCc-eeEEEeccccccccccccccccccCcchhhHHhccccccccccccccccc
Confidence 99999999999999994 67888998855 58888753210000 000000000 0001111111111 1234
Q ss_pred cEEEEEEccCCCE-EEEEeCCCeEEEEeCCC
Q 003907 433 TIQDICFSHYSQW-IAIVSSKGTCHVFVLSP 462 (787)
Q Consensus 433 ~I~slaFSpDg~~-LAs~S~dgTVhIwdl~~ 462 (787)
.|++++||.-.-| +|+-|.||.+.|=.+.+
T Consensus 332 SVY~~aWSsadPWiFASLSYDGRviIs~V~r 362 (370)
T KOG1007|consen 332 SVYALAWSSADPWIFASLSYDGRVIISSVPR 362 (370)
T ss_pred ceEEEeeccCCCeeEEEeccCceEEeecCCh
Confidence 6999999976666 46668899998866654
No 159
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=98.95 E-value=1.3e-08 Score=105.47 Aligned_cols=69 Identities=23% Similarity=0.297 Sum_probs=55.0
Q ss_pred eEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeC
Q 003907 372 ISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSS 451 (787)
Q Consensus 372 IsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~LAs~S~ 451 (787)
|+.+.+-||++.||||+.|++ ||||..++ . .++..|.- |.+.|.+++|+||...+|++|.
T Consensus 254 v~gvrIRpD~KIlATAGWD~R-iRVyswrt-------l----------~pLAVLky--Hsagvn~vAfspd~~lmAaask 313 (323)
T KOG0322|consen 254 VSGVRIRPDGKILATAGWDHR-IRVYSWRT-------L----------NPLAVLKY--HSAGVNAVAFSPDCELMAAASK 313 (323)
T ss_pred ccceEEccCCcEEeecccCCc-EEEEEecc-------C----------Cchhhhhh--hhcceeEEEeCCCCchhhhccC
Confidence 445557788999999999776 89998754 2 35555532 4467999999999999999999
Q ss_pred CCeEEEEeC
Q 003907 452 KGTCHVFVL 460 (787)
Q Consensus 452 dgTVhIwdl 460 (787)
|++|-+|++
T Consensus 314 D~rISLWkL 322 (323)
T KOG0322|consen 314 DARISLWKL 322 (323)
T ss_pred CceEEeeec
Confidence 999999986
No 160
>PRK03629 tolB translocation protein TolB; Provisional
Probab=98.93 E-value=4.9e-07 Score=103.23 Aligned_cols=212 Identities=17% Similarity=0.112 Sum_probs=125.0
Q ss_pred EEEEEccCCCceeEeeeeccCcEEEEEEecCCCCCCCCCCccccCcEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCC
Q 003907 86 FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQS 165 (787)
Q Consensus 86 ~qVWdv~~~~~~~ells~~dg~V~~v~~lP~P~~~~~~d~F~~srpLLavV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~ 165 (787)
+.|||.+ ..+.+. +..+.+++....+.|+. + .||.+.-+.
T Consensus 181 l~~~d~d-g~~~~~-lt~~~~~~~~p~wSPDG-----------~--~la~~s~~~------------------------- 220 (429)
T PRK03629 181 LRVSDYD-GYNQFV-VHRSPQPLMSPAWSPDG-----------S--KLAYVTFES------------------------- 220 (429)
T ss_pred EEEEcCC-CCCCEE-eecCCCceeeeEEcCCC-----------C--EEEEEEecC-------------------------
Confidence 6667764 233333 44456789999999862 2 556544211
Q ss_pred CCCCCCCCEEEEEECCCCeEEEEEeCCCcEEEEEecC--CeEEEEeC----CeEEEEECCCCceeEEEEecCCcccCCCC
Q 003907 166 GNCVNSPTAVRFYSFQSHCYEHVLRFRSSVCMVRCSP--RIVAVGLA----TQIYCFDALTLENKFSVLTYPVPQLAGQG 239 (787)
Q Consensus 166 ~~~~~~p~tVrlWdlktg~~v~tL~f~s~V~sV~~s~--~~LaV~~~----~~I~iwD~~T~e~l~tl~t~p~p~~~~~~ 239 (787)
....|.+||+.+|+......+...+.+++++| +.|+.... .+|++||+.+++. ..+......
T Consensus 221 -----g~~~i~i~dl~~G~~~~l~~~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~-~~lt~~~~~------ 288 (429)
T PRK03629 221 -----GRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDGRSN------ 288 (429)
T ss_pred -----CCcEEEEEECCCCCeEEccCCCCCcCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCE-EEccCCCCC------
Confidence 01479999999987655555666667788888 56775432 2599999988764 223221110
Q ss_pred ccccccccceeEEcc--ceEEEecCCceecCcceeccccCCCCCcCCCcCCCCCceeEeeehhhhhhhhcccceeecccc
Q 003907 240 AVGINVGYGPMAVGP--RWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYC 317 (787)
Q Consensus 240 ~~~~~~~~~~lAlsp--r~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~ 317 (787)
....+++| ++|+|..+..
T Consensus 289 -------~~~~~wSPDG~~I~f~s~~~----------------------------------------------------- 308 (429)
T PRK03629 289 -------NTEPTWFPDSQNLAYTSDQA----------------------------------------------------- 308 (429)
T ss_pred -------cCceEECCCCCEEEEEeCCC-----------------------------------------------------
Confidence 12345555 4555543210
Q ss_pred cccCCCCCCCCcccCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCC--CEEE
Q 003907 318 QELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYG--NNIN 395 (787)
Q Consensus 318 ~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG--~~Ir 395 (787)
..-.|.++|+.+++. ..+..+.......+|+|||++|+..+.++ ..|.
T Consensus 309 -----------------------------g~~~Iy~~d~~~g~~-~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~ 358 (429)
T PRK03629 309 -----------------------------GRPQVYKVNINGGAP-QRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIA 358 (429)
T ss_pred -----------------------------CCceEEEEECCCCCe-EEeecCCCCccCEEECCCCCEEEEEEccCCCceEE
Confidence 001233445555433 23333344556789999999998877543 3477
Q ss_pred EEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCe---EEEEeC
Q 003907 396 IFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGT---CHVFVL 460 (787)
Q Consensus 396 VWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~LAs~S~dgT---VhIwdl 460 (787)
+||+.. + ....+..+ ....+.+|||||++|+.++.++. +.++++
T Consensus 359 ~~dl~~-------g-----------~~~~Lt~~---~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~ 405 (429)
T PRK03629 359 KQDLAT-------G-----------GVQVLTDT---FLDETPSIAPNGTMVIYSSSQGMGSVLNLVST 405 (429)
T ss_pred EEECCC-------C-----------CeEEeCCC---CCCCCceECCCCCEEEEEEcCCCceEEEEEEC
Confidence 788743 2 12233222 12346889999999999998875 455555
No 161
>PRK05137 tolB translocation protein TolB; Provisional
Probab=98.93 E-value=7.5e-07 Score=101.70 Aligned_cols=204 Identities=15% Similarity=0.151 Sum_probs=122.7
Q ss_pred EEEEEccCCCceeEeeeeccCcEEEEEEecCCCCCCCCCCccccCcEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCC
Q 003907 86 FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQS 165 (787)
Q Consensus 86 ~qVWdv~~~~~~~ells~~dg~V~~v~~lP~P~~~~~~d~F~~srpLLavV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~ 165 (787)
+.+||. .+.-.+.+..+.++|....+.|+. + .|+.+....
T Consensus 184 l~~~d~--dg~~~~~lt~~~~~v~~p~wSpDG-----------~--~lay~s~~~------------------------- 223 (435)
T PRK05137 184 LAIMDQ--DGANVRYLTDGSSLVLTPRFSPNR-----------Q--EITYMSYAN------------------------- 223 (435)
T ss_pred EEEECC--CCCCcEEEecCCCCeEeeEECCCC-----------C--EEEEEEecC-------------------------
Confidence 445554 344445566777899999999862 2 555544211
Q ss_pred CCCCCCCCEEEEEECCCCeEEEEEeCCCcEEEEEecC--CeEEEEeC----CeEEEEECCCCceeEEEEecCCcccCCCC
Q 003907 166 GNCVNSPTAVRFYSFQSHCYEHVLRFRSSVCMVRCSP--RIVAVGLA----TQIYCFDALTLENKFSVLTYPVPQLAGQG 239 (787)
Q Consensus 166 ~~~~~~p~tVrlWdlktg~~v~tL~f~s~V~sV~~s~--~~LaV~~~----~~I~iwD~~T~e~l~tl~t~p~p~~~~~~ 239 (787)
....|.+||+.+|+......+...+.+.++++ +.|++... ..|++||+.+++. ..|..++..
T Consensus 224 -----g~~~i~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~-~~Lt~~~~~------ 291 (435)
T PRK05137 224 -----GRPRVYLLDLETGQRELVGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTT-TRLTDSPAI------ 291 (435)
T ss_pred -----CCCEEEEEECCCCcEEEeecCCCcccCcEECCCCCEEEEEEecCCCceEEEEECCCCce-EEccCCCCc------
Confidence 01479999999988754445677788888987 56665432 3599999988764 333322210
Q ss_pred ccccccccceeEEcc--ceEEEecCCceecCcceeccccCCCCCcCCCcCCCCCceeEeeehhhhhhhhcccceeecccc
Q 003907 240 AVGINVGYGPMAVGP--RWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYC 317 (787)
Q Consensus 240 ~~~~~~~~~~lAlsp--r~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~ 317 (787)
....+++| ++|+|.++.
T Consensus 292 -------~~~~~~spDG~~i~f~s~~------------------------------------------------------ 310 (435)
T PRK05137 292 -------DTSPSYSPDGSQIVFESDR------------------------------------------------------ 310 (435)
T ss_pred -------cCceeEcCCCCEEEEEECC------------------------------------------------------
Confidence 11234444 445443311
Q ss_pred cccCCCCCCCCcccCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCC--CEEE
Q 003907 318 QELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYG--NNIN 395 (787)
Q Consensus 318 ~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG--~~Ir 395 (787)
.....|.++|+.+++. ..+..+...+...+|+|||++||..+.++ ..|.
T Consensus 311 ----------------------------~g~~~Iy~~d~~g~~~-~~lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~ 361 (435)
T PRK05137 311 ----------------------------SGSPQLYVMNADGSNP-RRISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIG 361 (435)
T ss_pred ----------------------------CCCCeEEEEECCCCCe-EEeecCCCcccCeEECCCCCEEEEEEcCCCceEEE
Confidence 0012466777765543 33433445567789999999999877543 3466
Q ss_pred EEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCC
Q 003907 396 IFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSK 452 (787)
Q Consensus 396 VWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~LAs~S~d 452 (787)
+||+.. + ....+..+ ..+.+.+|||||++|+..+.+
T Consensus 362 ~~d~~~-------~-----------~~~~lt~~---~~~~~p~~spDG~~i~~~~~~ 397 (435)
T PRK05137 362 VMKPDG-------S-----------GERILTSG---FLVEGPTWAPNGRVIMFFRQT 397 (435)
T ss_pred EEECCC-------C-----------ceEeccCC---CCCCCCeECCCCCEEEEEEcc
Confidence 777632 1 11223222 236789999999999887654
No 162
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=98.93 E-value=2.5e-08 Score=106.50 Aligned_cols=187 Identities=17% Similarity=0.195 Sum_probs=124.0
Q ss_pred CEEEEEECCCCeEEEEEeCCC-cEEEEEe----cCCeEEE-EeCCeEEEEECCCCceeEEEEecCCcccCCCCccccccc
Q 003907 173 TAVRFYSFQSHCYEHVLRFRS-SVCMVRC----SPRIVAV-GLATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVG 246 (787)
Q Consensus 173 ~tVrlWdlktg~~v~tL~f~s-~V~sV~~----s~~~LaV-~~~~~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~~ 246 (787)
+.|++||..+++.+..++.+. .+-.|+| ++..|.+ +.++.|++||+++......+.....| +. .
T Consensus 50 gsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~-----~~-----~ 119 (376)
T KOG1188|consen 50 GSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQS-----GT-----P 119 (376)
T ss_pred CeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCC-----CC-----c
Confidence 589999999999999998653 4555555 3455555 55779999999988766655532211 00 0
Q ss_pred cceeEEcc--ceEEEecCCceecCcceeccccCCCCCcCCCcCCCCCceeEeeehhhhhhhhcccceeecccccccCCCC
Q 003907 247 YGPMAVGP--RWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDG 324 (787)
Q Consensus 247 ~~~lAlsp--r~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~ 324 (787)
+..++.+. +.+|.+...
T Consensus 120 f~~ld~nck~~ii~~GtE~------------------------------------------------------------- 138 (376)
T KOG1188|consen 120 FICLDLNCKKNIIACGTEL------------------------------------------------------------- 138 (376)
T ss_pred ceEeeccCcCCeEEecccc-------------------------------------------------------------
Confidence 22233321 122221100
Q ss_pred CCCCcccCCccccccccccccCCCceEEEEECCCCcE-EEE-eccCCCCeEEEEECC-CCCEEEEEEcCCCEEEEEeCCC
Q 003907 325 SSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAI-ISQ-FKAHTSPISALCFDP-SGTLLVTASVYGNNINIFRIMP 401 (787)
Q Consensus 325 s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~-v~~-~~aH~~pIsaLaFSp-dG~lLATaS~dG~~IrVWdi~~ 401 (787)
...+-.|.+||++..+. +.. +..|...|++|+|+| +-.+|+|||.|| .|+|||+.-
T Consensus 139 --------------------~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDG-LvnlfD~~~ 197 (376)
T KOG1188|consen 139 --------------------TRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDG-LVNLFDTKK 197 (376)
T ss_pred --------------------ccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccc-eEEeeecCC
Confidence 12345789999988654 444 468999999999999 467999999977 699999953
Q ss_pred CcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCC-CEEEEEeCCCeEEEEeCCCCCCcc
Q 003907 402 SCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYS-QWIAIVSSKGTCHVFVLSPFGGDS 467 (787)
Q Consensus 402 ~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg-~~LAs~S~dgTVhIwdl~~~gg~~ 467 (787)
.... -..+..+. +...|-.+.|..++ +.|.+-+..+|..+|+++....+.
T Consensus 198 d~Ee-------------DaL~~viN---~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~ 248 (376)
T KOG1188|consen 198 DNEE-------------DALLHVIN---HGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEET 248 (376)
T ss_pred Ccch-------------hhHHHhhc---ccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhh
Confidence 2100 01222332 22458999999988 558999999999999999866443
No 163
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=98.92 E-value=4e-09 Score=122.16 Aligned_cols=279 Identities=17% Similarity=0.195 Sum_probs=174.3
Q ss_pred CCCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCceeEeeeeccCcEEEEEEecCCCCCCCCCCccccC
Q 003907 52 SEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLH 130 (787)
Q Consensus 52 ~~~~~~~v~wa~Fd~l~~~~~~~~~vL~lG~~~G-~qVWdv~~~~~~~ells~~dg~V~~v~~lP~P~~~~~~d~F~~sr 130 (787)
.-+|..-|++|-||+ .+..++.||++- ++||..+ ++.+...+.+|.|.++-+++. .++
T Consensus 186 LlgH~naVyca~fDr-------tg~~Iitgsdd~lvKiwS~e-t~~~lAs~rGhs~ditdlavs-------------~~n 244 (1113)
T KOG0644|consen 186 LLGHRNAVYCAIFDR-------TGRYIITGSDDRLVKIWSME-TARCLASCRGHSGDITDLAVS-------------SNN 244 (1113)
T ss_pred HHhhhhheeeeeecc-------ccceEeecCccceeeeeecc-chhhhccCCCCccccchhccc-------------hhh
Confidence 567888999999997 367899999986 8999975 466777788899999988865 222
Q ss_pred cEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCC-CcEEEEEecCCeEEEEe
Q 003907 131 PFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFR-SSVCMVRCSPRIVAVGL 209 (787)
Q Consensus 131 pLLavV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~v~tL~f~-s~V~sV~~s~~~LaV~~ 209 (787)
-++|..+ .+..|++|-+.++..|..|..+ +.|.+|+|+|+. +.+.
T Consensus 245 ~~iaaaS---------------------------------~D~vIrvWrl~~~~pvsvLrghtgavtaiafsP~~-sss~ 290 (1113)
T KOG0644|consen 245 TMIAAAS---------------------------------NDKVIRVWRLPDGAPVSVLRGHTGAVTAIAFSPRA-SSSD 290 (1113)
T ss_pred hhhhhcc---------------------------------cCceEEEEecCCCchHHHHhccccceeeeccCccc-cCCC
Confidence 2333211 2478999999999999999765 699999999976 5566
Q ss_pred CCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCcceeccccCCCCCcCCCcCCC
Q 003907 210 ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPG 289 (787)
Q Consensus 210 ~~~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~~~~~lAlspr~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~sp~ 289 (787)
++++.+||+. ++. +...|.|-. +.+.. -...+-+-..|-++.+.. .
T Consensus 291 dgt~~~wd~r-~~~---~~y~prp~~----~~~~~-~~~s~~~~~~~~~f~Tgs--------~----------------- 336 (1113)
T KOG0644|consen 291 DGTCRIWDAR-LEP---RIYVPRPLK----FTEKD-LVDSILFENNGDRFLTGS--------R----------------- 336 (1113)
T ss_pred CCceEecccc-ccc---cccCCCCCC----ccccc-ceeeeecccccccccccc--------C-----------------
Confidence 7899999987 222 222333310 00000 001111111222221110 0
Q ss_pred CCceeEeeehhhhhhhhccccee-ecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECCCCcEEEEeccC
Q 003907 290 GSSLVARYAMEHSKQFAAGLSKT-LSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAH 368 (787)
Q Consensus 290 ~g~lva~~a~d~sk~la~G~~kt-ls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~v~~~~aH 368 (787)
...|+ ..+...-..+. +.-+. .. +++.. . -..++-.+-.+.+|++.++..++.+.+|
T Consensus 337 --d~ea~-----n~e~~~l~~~~~~lif~----t~--------ssd~~--~-~~~~ar~~~~~~vwnl~~g~l~H~l~gh 394 (1113)
T KOG0644|consen 337 --DGEAR-----NHEFEQLAWRSNLLIFV----TR--------SSDLS--S-IVVTARNDHRLCVWNLYTGQLLHNLMGH 394 (1113)
T ss_pred --Ccccc-----cchhhHhhhhccceEEE----ec--------ccccc--c-cceeeeeeeEeeeeecccchhhhhhccc
Confidence 00000 00000000000 00000 00 00000 0 0113445678889999999999999999
Q ss_pred CCCeEEEEECCCCC-EEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEE
Q 003907 369 TSPISALCFDPSGT-LLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIA 447 (787)
Q Consensus 369 ~~pIsaLaFSpdG~-lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~LA 447 (787)
..++..|.|+|-.. ...+|+.||. +.|||+.. | ...+.|. .| +..+.+.+||+||+-++
T Consensus 395 sd~~yvLd~Hpfn~ri~msag~dgs-t~iwdi~e-------g--------~pik~y~--~g--h~kl~d~kFSqdgts~~ 454 (1113)
T KOG0644|consen 395 SDEVYVLDVHPFNPRIAMSAGYDGS-TIIWDIWE-------G--------IPIKHYF--IG--HGKLVDGKFSQDGTSIA 454 (1113)
T ss_pred ccceeeeeecCCCcHhhhhccCCCc-eEeeeccc-------C--------Ccceeee--cc--cceeeccccCCCCceEe
Confidence 99999999999554 4557888776 67999843 3 1233343 44 35688999999999999
Q ss_pred EEeCCCeEEEEeCC
Q 003907 448 IVSSKGTCHVFVLS 461 (787)
Q Consensus 448 s~S~dgTVhIwdl~ 461 (787)
...+-|-+.|+...
T Consensus 455 lsd~hgql~i~g~g 468 (1113)
T KOG0644|consen 455 LSDDHGQLYILGTG 468 (1113)
T ss_pred cCCCCCceEEeccC
Confidence 99999988887653
No 164
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=98.91 E-value=5.6e-08 Score=110.43 Aligned_cols=114 Identities=14% Similarity=0.137 Sum_probs=73.0
Q ss_pred CCCceEEEEECCCCcEE------E--EeccC---CCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccc
Q 003907 346 DNAGIVVVKDFVTRAII------S--QFKAH---TSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYD 414 (787)
Q Consensus 346 ~~dG~V~IwDl~s~~~v------~--~~~aH---~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~ 414 (787)
+.||.|+|||++..... . .+.-| .-.+.+|..+..|++|.....|++ |..|++.....
T Consensus 237 a~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~s-Iy~ynm~s~s~---------- 305 (720)
T KOG0321|consen 237 AADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNS-IYFYNMRSLSI---------- 305 (720)
T ss_pred CCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCc-EEEEeccccCc----------
Confidence 35999999999875322 2 22233 236788999999998765555565 99999854310
Q ss_pred cCCcceEEEEEecccccccE-EEEEEccCCCEEEEEeCCCeEEEEeCCCCCCcc-ccccccCCC
Q 003907 415 WNSSHVHLYKLHRGITSATI-QDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDS-GFQTLSSQG 476 (787)
Q Consensus 415 ~~~s~~~l~~l~rG~~~a~I-~slaFSpDg~~LAs~S~dgTVhIwdl~~~gg~~-~~~~H~~~~ 476 (787)
..+..+. |.-+..+ ..=..|||+.+|++++.|+-+.||.++...... .+.+|+-.+
T Consensus 306 -----sP~~~~s-g~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eV 363 (720)
T KOG0321|consen 306 -----SPVAEFS-GKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREV 363 (720)
T ss_pred -----Cchhhcc-CcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhhhCcceEE
Confidence 1111111 1111111 113469999999999999999999998776654 346675543
No 165
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=98.90 E-value=2.8e-07 Score=105.69 Aligned_cols=290 Identities=14% Similarity=0.163 Sum_probs=160.3
Q ss_pred CeEEEEEecCcEEEEEccCCCceeEeeeeccCcEEEEEEecCCCCCCCCCCccccCcEEEEEEcCCCCCCCCCCCcCCCC
Q 003907 75 KQVLLLGYQNGFQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLG 154 (787)
Q Consensus 75 ~~vL~lG~~~G~qVWdv~~~~~~~ells~~dg~V~~v~~lP~P~~~~~~d~F~~srpLLavV~~d~~~~~~~~~~~~~~~ 154 (787)
+..++-|...-++|||-... .....+.+|.++|.|++++|.-. +. +.+ |+|+
T Consensus 25 ~~~vafGa~~~Iav~dp~k~-~i~t~l~GH~a~VnC~~~l~~s~-------~~---a~~--vsG~--------------- 76 (764)
T KOG1063|consen 25 GGLVAFGAGPAIAVADPEKI-LIVTTLDGHVARVNCVHWLPTSE-------IV---AEM--VSGD--------------- 76 (764)
T ss_pred cceEEecCCceEEEeCcccc-eeEEeccCCccceEEEEEccccc-------cc---ceE--EEcc---------------
Confidence 45788888888999997653 34567789999999999998632 11 233 3443
Q ss_pred CcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCC---cEEEEEecCCeEEE-EeCCeEEEEECCCCc--eeEEEE
Q 003907 155 GVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRS---SVCMVRCSPRIVAV-GLATQIYCFDALTLE--NKFSVL 228 (787)
Q Consensus 155 ~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~v~tL~f~s---~V~sV~~s~~~LaV-~~~~~I~iwD~~T~e--~l~tl~ 228 (787)
++++|++|-++....++.+.+.. .+.+|...+....+ +.++.+++||.+.-+ +++.+.
T Consensus 77 ----------------sD~~v~lW~l~~~~~~~i~~~~g~~~~~~cv~a~~~~~~~~~ad~~v~vw~~~~~e~~~~~~~r 140 (764)
T KOG1063|consen 77 ----------------SDGRVILWKLRDEYLIKIYTIQGHCKECVCVVARSSVMTCKAADGTVSVWDKQQDEVFLLAVLR 140 (764)
T ss_pred ----------------CCCcEEEEEEeehheEEEEeecCcceeEEEEEeeeeEEEeeccCceEEEeecCCCceeeehhee
Confidence 24789999998555555444332 55565555544444 567789999995544 233332
Q ss_pred ecCCcccCCCCccccccccceeEEcc----ceEEEecCCceecCcceeccccCCCCCcCCCcCCCCCc--eeEeeehhhh
Q 003907 229 TYPVPQLAGQGAVGINVGYGPMAVGP----RWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSS--LVARYAMEHS 302 (787)
Q Consensus 229 t~p~p~~~~~~~~~~~~~~~~lAlsp----r~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~sp~~g~--lva~~a~d~s 302 (787)
- ..... + .-.+++.+ -.||.++++..+--.+ .+.++ .++
T Consensus 141 f-~~k~~---------i-pLcL~~~~~~~~~lla~Ggs~~~v~~~s-----------------~~~d~f~~v~------- 185 (764)
T KOG1063|consen 141 F-EIKEA---------I-PLCLAALKNNKTFLLACGGSKFVVDLYS-----------------SSADSFARVA------- 185 (764)
T ss_pred h-hhhhH---------h-hHHHhhhccCCcEEEEecCcceEEEEec-----------------cCCcceeEEE-------
Confidence 1 00000 0 00111111 1345554432110000 00000 011
Q ss_pred hhhhcccceeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECCCCc---------------------E
Q 003907 303 KQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRA---------------------I 361 (787)
Q Consensus 303 k~la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~---------------------~ 361 (787)
.+.++.. ....+.++-... +...++++++|..|+||.+.-+. .
T Consensus 186 ---------el~GH~D------WIrsl~f~~~~~-~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~ 249 (764)
T KOG1063|consen 186 ---------ELEGHTD------WIRSLAFARLGG-DDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMI 249 (764)
T ss_pred ---------Eeeccch------hhhhhhhhccCC-CcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeee
Confidence 1111110 011111110000 12345688999999999763211 1
Q ss_pred E----------EEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCc--------ccCCCCCC--cc--ccCC--
Q 003907 362 I----------SQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSC--------MRSGSGNH--KY--DWNS-- 417 (787)
Q Consensus 362 v----------~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~--------~~~~~g~~--~~--~~~~-- 417 (787)
. +.+.+|++.|.++-|+|.|..|++||. |+++.||.-.... .+...|++ .+ .|.+
T Consensus 250 l~~i~~~is~eall~GHeDWV~sv~W~p~~~~LLSASa-DksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~ 328 (764)
T KOG1063|consen 250 LEEIQYRISFEALLMGHEDWVYSVWWHPEGLDLLSASA-DKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNS 328 (764)
T ss_pred eeeEEEEEehhhhhcCcccceEEEEEccchhhheeccc-CcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCC
Confidence 1 223489999999999999999999999 4558899743220 00001111 00 0111
Q ss_pred ---------cceEEEE-------E----ecccccccEEEEEEccCCCEEEEEeCCCeEEEEeCC
Q 003907 418 ---------SHVHLYK-------L----HRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLS 461 (787)
Q Consensus 418 ---------s~~~l~~-------l----~rG~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~ 461 (787)
...++++ . -.| |.+.|++++|+|.|.||.++|.|.|.+||.--
T Consensus 329 ~~ii~~g~~Gg~hlWkt~d~~~w~~~~~iSG-H~~~V~dv~W~psGeflLsvs~DQTTRlFa~w 391 (764)
T KOG1063|consen 329 NVIIAHGRTGGFHLWKTKDKTFWTQEPVISG-HVDGVKDVDWDPSGEFLLSVSLDQTTRLFARW 391 (764)
T ss_pred CEEEEecccCcEEEEeccCccceeecccccc-ccccceeeeecCCCCEEEEeccccceeeeccc
Confidence 1123333 1 123 33469999999999999999999999999754
No 166
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=98.89 E-value=7.8e-08 Score=103.78 Aligned_cols=110 Identities=17% Similarity=0.338 Sum_probs=71.1
Q ss_pred cccCCCceEEEEECCC---CcEEEEeccCCCCeEEEEECCC-CCEEEEEEcCCCEEEEEeCCCCcccCC--CCCCcc--c
Q 003907 343 ADMDNAGIVVVKDFVT---RAIISQFKAHTSPISALCFDPS-GTLLVTASVYGNNINIFRIMPSCMRSG--SGNHKY--D 414 (787)
Q Consensus 343 ~s~~~dG~V~IwDl~s---~~~v~~~~aH~~pIsaLaFSpd-G~lLATaS~dG~~IrVWdi~~~~~~~~--~g~~~~--~ 414 (787)
++++.+|+++|||++. ++++++|+-|..||++|.|+|. ...||.++. +..|.|||+........ .-.... +
T Consensus 318 asG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~-D~QitiWDlsvE~D~ee~~~~a~~~L~d 396 (440)
T KOG0302|consen 318 ASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGE-DNQITIWDLSVEADEEEIDQEAAEGLQD 396 (440)
T ss_pred eecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccC-CCcEEEEEeeccCChhhhccccccchhc
Confidence 4567899999999975 5789999999999999999994 344555555 45699999965321000 000000 1
Q ss_pred cCCcceEEEEEecccccccEEEEEEccCC-CEEEEEeCCCeEEEEe
Q 003907 415 WNSSHVHLYKLHRGITSATIQDICFSHYS-QWIAIVSSKGTCHVFV 459 (787)
Q Consensus 415 ~~~s~~~l~~l~rG~~~a~I~slaFSpDg-~~LAs~S~dgTVhIwd 459 (787)
.. .+.++. +.|. ..|..+.|.+.- -+|++.+.|| +.||.
T Consensus 397 lP--pQLLFV-HqGQ--ke~KevhWH~QiPG~lvsTa~dG-fnVfk 436 (440)
T KOG0302|consen 397 LP--PQLLFV-HQGQ--KEVKEVHWHRQIPGLLVSTAIDG-FNVFK 436 (440)
T ss_pred CC--ceeEEE-ecch--hHhhhheeccCCCCeEEEecccc-eeEEE
Confidence 11 123332 3342 368899999864 4778888888 44553
No 167
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=98.88 E-value=9.6e-08 Score=100.24 Aligned_cols=176 Identities=18% Similarity=0.296 Sum_probs=114.1
Q ss_pred CCEEEEEECCCCeE--EE-EE-eCCCcEEEEEecC---CeEE-EEeCCeEEEEECCCCceeEEEEecCCcccCCCCcccc
Q 003907 172 PTAVRFYSFQSHCY--EH-VL-RFRSSVCMVRCSP---RIVA-VGLATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGI 243 (787)
Q Consensus 172 p~tVrlWdlktg~~--v~-tL-~f~s~V~sV~~s~---~~La-V~~~~~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~ 243 (787)
++|..|||+.+|.. ++ .| -+..+|++|+|.+ +++| ||.++.+++||++.++.-..+...|.|.
T Consensus 172 DTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~--------- 242 (364)
T KOG0290|consen 172 DTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPS--------- 242 (364)
T ss_pred cCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCC---------
Confidence 47999999998732 22 33 3567999999977 5666 5778899999999988655555544430
Q ss_pred ccccceeEEccceEEEecCCceecCcceeccccCCCCCcCCCcCCCCCceeEeeehhhhhhhhcccceeecccccccCCC
Q 003907 244 NVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPD 323 (787)
Q Consensus 244 ~~~~~~lAlspr~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~ 323 (787)
.-.+- |+....++ .|.
T Consensus 243 ---~pLlR-----LswnkqDp--------------------------------------------------nym------ 258 (364)
T KOG0290|consen 243 ---TPLLR-----LSWNKQDP--------------------------------------------------NYM------ 258 (364)
T ss_pred ---Cccee-----eccCcCCc--------------------------------------------------hHH------
Confidence 00011 11111110 000
Q ss_pred CCCCCcccCCccccccccccccCCCceEEEEECCCC-cEEEEeccCCCCeEEEEECC-CCCEEEEEEcCCCEEEEEeCCC
Q 003907 324 GSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTR-AIISQFKAHTSPISALCFDP-SGTLLVTASVYGNNINIFRIMP 401 (787)
Q Consensus 324 ~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~-~~v~~~~aH~~pIsaLaFSp-dG~lLATaS~dG~~IrVWdi~~ 401 (787)
...+.....|.|.|++.. .+++.|+.|++.|++++|.| +...|+||++ +..+-|||+..
T Consensus 259 ------------------ATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGD-D~qaliWDl~q 319 (364)
T KOG0290|consen 259 ------------------ATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGD-DCQALIWDLQQ 319 (364)
T ss_pred ------------------hhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCC-cceEEEEeccc
Confidence 001233457889999864 57899999999999999999 5778999998 66799999954
Q ss_pred CcccCCCCCCccccCCcceEEEEEecccccccEEEEEEcc-CCCEEEEEeCCC
Q 003907 402 SCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSH-YSQWIAIVSSKG 453 (787)
Q Consensus 402 ~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSp-Dg~~LAs~S~dg 453 (787)
.+..+ + . .....|. . .++|..|.|++ .+.||+++..+.
T Consensus 320 ~~~~~--~---~----dPilay~--a---~~EVNqi~Ws~~~~Dwiai~~~kk 358 (364)
T KOG0290|consen 320 MPREN--G---E----DPILAYT--A---GGEVNQIQWSSSQPDWIAICFGKK 358 (364)
T ss_pred ccccC--C---C----Cchhhhh--c---cceeeeeeecccCCCEEEEEecCe
Confidence 21101 0 0 0012233 1 24699999994 678999998653
No 168
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=98.88 E-value=6.1e-08 Score=107.30 Aligned_cols=207 Identities=14% Similarity=0.278 Sum_probs=140.0
Q ss_pred CeEEEEEecCc-EEEEEccCCCceeEeeeeccCcEEEEEEecCCCCCCCCCCccccCcEEEEEEcCCCCCCCCCCCcCCC
Q 003907 75 KQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHL 153 (787)
Q Consensus 75 ~~vL~lG~~~G-~qVWdv~~~~~~~ells~~dg~V~~v~~lP~P~~~~~~d~F~~srpLLavV~~d~~~~~~~~~~~~~~ 153 (787)
...++.|..+| ++|||+. ..-+++-+..|...|.+|-+--+ +. .||.|.-+
T Consensus 91 S~y~~sgG~~~~Vkiwdl~-~kl~hr~lkdh~stvt~v~YN~~-----------De--yiAsvs~g-------------- 142 (673)
T KOG4378|consen 91 SLYEISGGQSGCVKIWDLR-AKLIHRFLKDHQSTVTYVDYNNT-----------DE--YIASVSDG-------------- 142 (673)
T ss_pred ceeeeccCcCceeeehhhH-HHHHhhhccCCcceeEEEEecCC-----------cc--eeEEeccC--------------
Confidence 34667777776 8999996 56677778888899999987622 22 67765421
Q ss_pred CCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCC--cEEEEEecC--Ce-EEEE-eCCeEEEEECCCCceeEEE
Q 003907 154 GGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRS--SVCMVRCSP--RI-VAVG-LATQIYCFDALTLENKFSV 227 (787)
Q Consensus 154 ~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~v~tL~f~s--~V~sV~~s~--~~-LaV~-~~~~I~iwD~~T~e~l~tl 227 (787)
+-|.|..++++..-.++...+ .|.-+++++ +. |.++ .++.|++||+..+...+..
T Consensus 143 -------------------Gdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~ 203 (673)
T KOG4378|consen 143 -------------------GDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHA 203 (673)
T ss_pred -------------------CcEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccch
Confidence 358899999999888888763 677888877 44 4444 4557999999887655544
Q ss_pred E-ecCCcccCCCCccccccccceeEEccceEEEecCCceecCcceeccccCCCCCcCCCcCCCCCceeEeeehhhhhhhh
Q 003907 228 L-TYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFA 306 (787)
Q Consensus 228 ~-t~p~p~~~~~~~~~~~~~~~~lAlspr~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~sp~~g~lva~~a~d~sk~la 306 (787)
. .|..|. .-+.| + |++--|.
T Consensus 204 ~~~HsAP~-------------~gicf-------s---------------------------psne~l~------------ 224 (673)
T KOG4378|consen 204 SEAHSAPC-------------RGICF-------S---------------------------PSNEALL------------ 224 (673)
T ss_pred hhhccCCc-------------Cccee-------c---------------------------CCccceE------------
Confidence 3 243330 01112 1 1111111
Q ss_pred cccceeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEE
Q 003907 307 AGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVT 386 (787)
Q Consensus 307 ~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~v~~~~aH~~pIsaLaFSpdG~lLAT 386 (787)
++.+.|..|.+||....+....|.. ..|.++++|+++|.+|+.
T Consensus 225 ------------------------------------vsVG~Dkki~~yD~~s~~s~~~l~y-~~Plstvaf~~~G~~L~a 267 (673)
T KOG4378|consen 225 ------------------------------------VSVGYDKKINIYDIRSQASTDRLTY-SHPLSTVAFSECGTYLCA 267 (673)
T ss_pred ------------------------------------EEecccceEEEeecccccccceeee-cCCcceeeecCCceEEEe
Confidence 1234678899999998776666643 469999999999999999
Q ss_pred EEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCC
Q 003907 387 ASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYS 443 (787)
Q Consensus 387 aS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg 443 (787)
|+.+|. |.-||++.. ..++..+. .+.+.|++|+|-|--
T Consensus 268 G~s~G~-~i~YD~R~~----------------k~Pv~v~s--ah~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 268 GNSKGE-LIAYDMRST----------------KAPVAVRS--AHDASVTRVAFQPSP 305 (673)
T ss_pred ecCCce-EEEEecccC----------------CCCceEee--ecccceeEEEeeecc
Confidence 999887 778998531 13444443 234569999998754
No 169
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.87 E-value=5.6e-09 Score=124.91 Aligned_cols=101 Identities=16% Similarity=0.179 Sum_probs=78.3
Q ss_pred ccCCCceEEEEECCCCcEEEEeccCCC--CeEEEEECCCC-CEEEEEEcCCC--EEEEEeCCCCcccCCCCCCccccCCc
Q 003907 344 DMDNAGIVVVKDFVTRAIISQFKAHTS--PISALCFDPSG-TLLVTASVYGN--NINIFRIMPSCMRSGSGNHKYDWNSS 418 (787)
Q Consensus 344 s~~~dG~V~IwDl~s~~~v~~~~aH~~--pIsaLaFSpdG-~lLATaS~dG~--~IrVWdi~~~~~~~~~g~~~~~~~~s 418 (787)
++..+|.+.|||++..+.+-.|.-|.. .++.|+|+|++ +.|++|+.|++ +|.+||++.. -
T Consensus 179 S~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~a------s--------- 243 (1049)
T KOG0307|consen 179 SGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFA------S--------- 243 (1049)
T ss_pred ccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeeccccc------C---------
Confidence 456688999999999988888876644 47899999974 57888888765 6999998531 0
Q ss_pred ceEEEEEecccccccEEEEEEccCC-CEEEEEeCCCeEEEEeCCC
Q 003907 419 HVHLYKLHRGITSATIQDICFSHYS-QWIAIVSSKGTCHVFVLSP 462 (787)
Q Consensus 419 ~~~l~~l~rG~~~a~I~slaFSpDg-~~LAs~S~dgTVhIwdl~~ 462 (787)
..+.++ +|+. .-|.+|+|++.+ ++|++++.|+.|.+|+.++
T Consensus 244 -sP~k~~-~~H~-~GilslsWc~~D~~lllSsgkD~~ii~wN~~t 285 (1049)
T KOG0307|consen 244 -SPLKIL-EGHQ-RGILSLSWCPQDPRLLLSSGKDNRIICWNPNT 285 (1049)
T ss_pred -Cchhhh-cccc-cceeeeccCCCCchhhhcccCCCCeeEecCCC
Confidence 234444 3433 348999999866 9999999999999999887
No 170
>KOG2109 consensus WD40 repeat protein [General function prediction only]
Probab=98.86 E-value=3.3e-09 Score=120.75 Aligned_cols=314 Identities=25% Similarity=0.306 Sum_probs=184.5
Q ss_pred CCeEEEEEecCc-EEEEEccCCCceeEeeeeccCcEEEEEEecCCCCCCCCCCccccCcEEEEEEcCCCCCCCCCCCcCC
Q 003907 74 FKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSH 152 (787)
Q Consensus 74 ~~~vL~lG~~~G-~qVWdv~~~~~~~ells~~dg~V~~v~~lP~P~~~~~~d~F~~srpLLavV~~d~~~~~~~~~~~~~ 152 (787)
.+..+++||=.| .++|-..-.+.+.+.+.++.|+|+.+.++++- ++.+
T Consensus 251 kGy~~isglc~g~~~~g~gpglgg~~~~~vGrvg~vsaesV~g~~--------------~viv----------------- 299 (788)
T KOG2109|consen 251 KGYVLISGLCRGSYQIGTGPGLGGFEEVLVGRVGPVSAESVLGNN--------------LVIV----------------- 299 (788)
T ss_pred chHHHHHHHhhcccCCCCCCCCCCcCceeccccccccceeecccc--------------eEEe-----------------
Confidence 356788888777 79998877888888899999999999888531 3222
Q ss_pred CCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCCcEEEEEecCCeEEEEeCCeEEEEECCCCceeEEEEe-cC
Q 003907 153 LGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRSSVCMVRCSPRIVAVGLATQIYCFDALTLENKFSVLT-YP 231 (787)
Q Consensus 153 ~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~v~tL~f~s~V~sV~~s~~~LaV~~~~~I~iwD~~T~e~l~tl~t-~p 231 (787)
..|-+++....++.++++..+++++-+..+|++++-..+.|++++.++..-++.. ++
T Consensus 300 ----------------------kdf~S~a~i~QfkAhkspiSaLcfdqsgsllViasi~g~nVnvfRimet~~t~~~~~q 357 (788)
T KOG2109|consen 300 ----------------------KDFDSFADIRQFKAHKSPISALCFDQSGSLLVIASITGRNVNVFRIMETVCTVNVSDQ 357 (788)
T ss_pred ----------------------ecccchhhhhheeeecCcccccccccCceEEEEEeeccceeeeEEecccccccccccc
Confidence 1123444555566666766777777777778877766666777666765444432 22
Q ss_pred CcccCCCCccccccccceeEEccceEEEec---CCceec---CcceeccccCCCCCcC-----CCc---CCCCCceeEee
Q 003907 232 VPQLAGQGAVGINVGYGPMAVGPRWLAYAS---NTLLLS---NSGRLSPQNLTPSGVS-----PST---SPGGSSLVARY 297 (787)
Q Consensus 232 ~p~~~~~~~~~~~~~~~~lAlspr~LAyas---~~~~l~---~~g~~s~q~lt~~~~s-----~s~---sp~~g~lva~~ 297 (787)
.+ ...+.++.++||++.- ...++. ..|. .-.+++.+.- ++. ..+.+-+++.
T Consensus 358 s~------------~~s~ra~t~aviqdicfs~~s~~r~~gsc~Ge--~P~ls~t~~lp~~A~~Sl~~gl~s~g~~aa~- 422 (788)
T KOG2109|consen 358 SL------------VVSPRANTAAVIQDICFSEVSTIRTAGSCEGE--PPALSLTCQLPAYADTSLDLGLQSSGGLAAE- 422 (788)
T ss_pred cc------------ccchhcchHHHHHHHhhhhhcceEeecccCCC--CcccccccccchhhchhhhccccccCcccce-
Confidence 21 0124555554443321 100000 0000 0001100000 000 0011111111
Q ss_pred ehhhhhhhhcccceeecccccccCCCCCCCCcccCCcccccccc-c-cccCCCceEEEEEC-----CCC-cEEEEeccCC
Q 003907 298 AMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHA-G-ADMDNAGIVVVKDF-----VTR-AIISQFKAHT 369 (787)
Q Consensus 298 a~d~sk~la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~-~-~s~~~dG~V~IwDl-----~s~-~~v~~~~aH~ 369 (787)
|+.-+-.+||...+..++....+.-++.+..+.. + ..-...|.+.+.+. ..+ .++..+-+|.
T Consensus 423 ----------gla~~sag~~a~s~~asSv~s~s~~pd~ks~gv~~gsv~k~~q~~~~~l~~llv~~psGd~vvqh~vahs 492 (788)
T KOG2109|consen 423 ----------GLATSSAGYTAHSYTASSVFSRSVKPDSKSVGVGSGSVTKANQGVITVLNLLLVGEPSGDGVVQHYVAHS 492 (788)
T ss_pred ----------eeeeccccccccccccceeeccccccchhhccceeeeccccCccchhhhhheeeecCCCCceeEEEeecc
Confidence 1111112333332211111111111222221110 0 01112233333332 123 5677788999
Q ss_pred CCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEE
Q 003907 370 SPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIV 449 (787)
Q Consensus 370 ~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~LAs~ 449 (787)
.++..+.|+++++++.|++..++.+.+|.++|+...+. -....++|++.||.+.++|..++|+-|++|+|..
T Consensus 493 ~~gv~~Ef~~~~~l~lSad~~e~ef~~f~V~Ph~~wss--------laav~hly~l~rG~TsaKv~~~afs~dsrw~A~~ 564 (788)
T KOG2109|consen 493 DPGVYIEFSPDQRLVLSADANENEFNIFLVMPHATWSS--------LAAVQHLYKLNRGSTSAKVVSTAFSEDSRWLAIT 564 (788)
T ss_pred CccceeeecccccceecccccccccceEEeecccccHH--------HhhhhhhhhccCCCccceeeeeEeecchhhhhhh
Confidence 99999999999999999999888779999988643211 1123689999999999999999999999999999
Q ss_pred eCCCeEEEEeCCCCCCcccccccc
Q 003907 450 SSKGTCHVFVLSPFGGDSGFQTLS 473 (787)
Q Consensus 450 S~dgTVhIwdl~~~gg~~~~~~H~ 473 (787)
...+|-|||.+.+|++....++|.
T Consensus 565 t~~~TthVfk~hpYgg~aeqrth~ 588 (788)
T KOG2109|consen 565 TNHATTHVFKVHPYGGKAEQRTHG 588 (788)
T ss_pred hcCCceeeeeeccccccccceecC
Confidence 999999999999999999999985
No 171
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.86 E-value=2.5e-06 Score=92.30 Aligned_cols=194 Identities=19% Similarity=0.294 Sum_probs=125.6
Q ss_pred EEEEEECCCCeEEEEEeCC----CcEEEEEecCC--eEEEEe---CCeEEEEECCCCceeEEEEecCCcccCCCCccccc
Q 003907 174 AVRFYSFQSHCYEHVLRFR----SSVCMVRCSPR--IVAVGL---ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGIN 244 (787)
Q Consensus 174 tVrlWdlktg~~v~tL~f~----s~V~sV~~s~~--~LaV~~---~~~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~ 244 (787)
.|.|||+++-+.+|+++-. ..+.++..|.. +||.=. .+.|++||+.+++..-+|..|..+
T Consensus 107 ~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~----------- 175 (391)
T KOG2110|consen 107 SIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTINAHKGP----------- 175 (391)
T ss_pred cEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEcccceeeeEEEecCCc-----------
Confidence 4999999999999999753 25777777774 777622 346999999999988888877653
Q ss_pred cccceeEEcc--ceEEEecCCceecCcceeccccCCCCCcCCCcCCCCCceeEeeehhhhhhhhcccceeecccccccCC
Q 003907 245 VGYGPMAVGP--RWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLP 322 (787)
Q Consensus 245 ~~~~~lAlsp--r~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p 322 (787)
.-.+||++ .+||.++
T Consensus 176 --lAalafs~~G~llATAS------------------------------------------------------------- 192 (391)
T KOG2110|consen 176 --LAALAFSPDGTLLATAS------------------------------------------------------------- 192 (391)
T ss_pred --eeEEEECCCCCEEEEec-------------------------------------------------------------
Confidence 23455544 3444443
Q ss_pred CCCCCCcccCCccccccccccccCCCc-eEEEEECCCCcEEEEeccCCC--CeEEEEECCCCCEEEEEEcCCCEEEEEeC
Q 003907 323 DGSSSPVSPNSVWKVGRHAGADMDNAG-IVVVKDFVTRAIISQFKAHTS--PISALCFDPSGTLLVTASVYGNNINIFRI 399 (787)
Q Consensus 323 ~~s~~~~s~s~~~~~~~~~~~s~~~dG-~V~IwDl~s~~~v~~~~aH~~--pIsaLaFSpdG~lLATaS~dG~~IrVWdi 399 (787)
..| .|||+++.+++.+.+|+.-.. .|.+|+|+||+++|+..|..++ |+||.+
T Consensus 193 ------------------------eKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeT-VHiFKL 247 (391)
T KOG2110|consen 193 ------------------------EKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASSNTET-VHIFKL 247 (391)
T ss_pred ------------------------cCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEecCCCe-EEEEEe
Confidence 233 478999999999999986544 5789999999999998888675 999998
Q ss_pred CCCccc-CC---CCCCccc-c----C----CcceEEEEEeccccc------ccEEEEEEc--cCCCEEEEEeCCCeEEEE
Q 003907 400 MPSCMR-SG---SGNHKYD-W----N----SSHVHLYKLHRGITS------ATIQDICFS--HYSQWIAIVSSKGTCHVF 458 (787)
Q Consensus 400 ~~~~~~-~~---~g~~~~~-~----~----~s~~~l~~l~rG~~~------a~I~slaFS--pDg~~LAs~S~dgTVhIw 458 (787)
...... .. .+....+ + . ..........|.... ..=..++|+ ++...+.+++.||.+..|
T Consensus 248 ~~~~~~~~~~p~~~~~~~~~~sk~~~sylps~V~~~~~~~R~FAt~~l~~s~~~~~~~l~~~~~~~~v~vas~dG~~y~y 327 (391)
T KOG2110|consen 248 EKVSNNPPESPTAGTSWFGKVSKAATSYLPSQVSSVLDQSRKFATAKLPESGRKNICSLSSIQKIPRVLVASYDGHLYSY 327 (391)
T ss_pred cccccCCCCCCCCCCcccchhhhhhhhhcchhhhhhhhhccceeEEEccCCCccceEEeeccCCCCEEEEEEcCCeEEEE
Confidence 643210 00 0000000 0 0 000000111111100 101234455 577899999999999999
Q ss_pred eCCCC-CCc
Q 003907 459 VLSPF-GGD 466 (787)
Q Consensus 459 dl~~~-gg~ 466 (787)
.+++. ||+
T Consensus 328 ~l~~~~gGe 336 (391)
T KOG2110|consen 328 RLPPKEGGE 336 (391)
T ss_pred EcCCCCCce
Confidence 99985 444
No 172
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=98.84 E-value=9.3e-08 Score=104.98 Aligned_cols=130 Identities=18% Similarity=0.264 Sum_probs=100.9
Q ss_pred CCCCCCcEEEEEEeeccCCCCCCCeEEEEEecC-cEEEEEccCCCceeEeeeeccCcEEEEEEecCCCCCCCCCCccccC
Q 003907 52 SEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQN-GFQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLH 130 (787)
Q Consensus 52 ~~~~~~~v~wa~Fd~l~~~~~~~~~vL~lG~~~-G~qVWdv~~~~~~~ells~~dg~V~~v~~lP~P~~~~~~d~F~~sr 130 (787)
.++|+|-|+...|+++ .+++|+.|+.+ .+++||++ .+++..++..|.+.|.++++-|. ..
T Consensus 239 ~~gHTdavl~Ls~n~~------~~nVLaSgsaD~TV~lWD~~-~g~p~~s~~~~~k~Vq~l~wh~~----------~p-- 299 (463)
T KOG0270|consen 239 ASGHTDAVLALSWNRN------FRNVLASGSADKTVKLWDVD-TGKPKSSITHHGKKVQTLEWHPY----------EP-- 299 (463)
T ss_pred cccchHHHHHHHhccc------cceeEEecCCCceEEEEEcC-CCCcceehhhcCCceeEEEecCC----------Cc--
Confidence 4579999999999874 47899999986 59999995 58899999999999999999863 23
Q ss_pred cEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCC-CeEEEEEeCCCcEEEEEecC---CeEE
Q 003907 131 PFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQS-HCYEHVLRFRSSVCMVRCSP---RIVA 206 (787)
Q Consensus 131 pLLavV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlkt-g~~v~tL~f~s~V~sV~~s~---~~La 206 (787)
.+++ +|. .+++|.+.|.+. .+.-..++|.+.|-.|.+++ ..+.
T Consensus 300 -~~LL-sGs-------------------------------~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w~~~se~~f~ 346 (463)
T KOG0270|consen 300 -SVLL-SGS-------------------------------YDGTVALKDCRDPSNSGKEWKFDGEVEKVAWDPHSENSFF 346 (463)
T ss_pred -eEEE-ecc-------------------------------ccceEEeeeccCccccCceEEeccceEEEEecCCCceeEE
Confidence 3333 221 247999999984 45556778999999999987 4555
Q ss_pred EEe-CCeEEEEECCCC-ceeEEEEecCCc
Q 003907 207 VGL-ATQIYCFDALTL-ENKFSVLTYPVP 233 (787)
Q Consensus 207 V~~-~~~I~iwD~~T~-e~l~tl~t~p~p 233 (787)
++. ++.+|-||++.. +.++++..|..+
T Consensus 347 ~~tddG~v~~~D~R~~~~~vwt~~AHd~~ 375 (463)
T KOG0270|consen 347 VSTDDGTVYYFDIRNPGKPVWTLKAHDDE 375 (463)
T ss_pred EecCCceEEeeecCCCCCceeEEEeccCC
Confidence 555 568999999876 788888877653
No 173
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=98.84 E-value=3.9e-08 Score=111.15 Aligned_cols=102 Identities=14% Similarity=0.242 Sum_probs=76.0
Q ss_pred cccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEE
Q 003907 343 ADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHL 422 (787)
Q Consensus 343 ~s~~~dG~V~IwDl~s~~~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l 422 (787)
+.+.+|-+|+|||+.+++....|.+|++.|..++|||||+++||...||+ ||||+-+.. ..++
T Consensus 694 a~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~-~rVy~Prs~----------------e~pv 756 (1012)
T KOG1445|consen 694 AVASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGT-LRVYEPRSR----------------EQPV 756 (1012)
T ss_pred hhhhccceeeeeehhhhhhhheeccCcCceeEEEECCCCcceeeeecCce-EEEeCCCCC----------------CCcc
Confidence 34567889999999999999999999999999999999999999999886 999986431 1344
Q ss_pred EEEecccccccEEEEEEccCCCEEEEEeCCC----eEEEEeCCC
Q 003907 423 YKLHRGITSATIQDICFSHYSQWIAIVSSKG----TCHVFVLSP 462 (787)
Q Consensus 423 ~~l~rG~~~a~I~slaFSpDg~~LAs~S~dg----TVhIwdl~~ 462 (787)
|+-. |.....=-.|.|.-||++|++.+.|. -|.+|+...
T Consensus 757 ~Eg~-gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~ 799 (1012)
T KOG1445|consen 757 YEGK-GPVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQT 799 (1012)
T ss_pred ccCC-CCccCcceeEEEEecCcEEEEecccccchhhhhhhhhhh
Confidence 4321 11111113467899999999988775 355555543
No 174
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=98.83 E-value=4.7e-08 Score=105.90 Aligned_cols=107 Identities=12% Similarity=0.131 Sum_probs=80.5
Q ss_pred ccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEE
Q 003907 344 DMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLY 423 (787)
Q Consensus 344 s~~~dG~V~IwDl~s~~~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~ 423 (787)
+++.|.+|.|||+.+++.+-++. |..-|.+++|+.||.+|+|++. ++.|||||.+. | ..+.
T Consensus 149 sag~Dn~v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l~Ttck-DKkvRv~dpr~-------~----------~~v~ 209 (472)
T KOG0303|consen 149 SAGSDNTVSIWNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCK-DKKVRVIDPRR-------G----------TVVS 209 (472)
T ss_pred hccCCceEEEEeccCCceeeecC-CCCeEEEEEeccCCceeeeecc-cceeEEEcCCC-------C----------cEee
Confidence 45678899999999999988888 9999999999999999999999 56699999764 3 2344
Q ss_pred EEecccccccEEEEEEccCCCEEEEEe---CCCeEEEEeCCCCCCccccc
Q 003907 424 KLHRGITSATIQDICFSHYSQWIAIVS---SKGTCHVFVLSPFGGDSGFQ 470 (787)
Q Consensus 424 ~l~rG~~~a~I~slaFSpDg~~LAs~S---~dgTVhIwdl~~~gg~~~~~ 470 (787)
+- .++..+.-...-|=.+|+.+.+|- ++..+-|||-+....+..+.
T Consensus 210 e~-~~heG~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~ 258 (472)
T KOG0303|consen 210 EG-VAHEGAKPARAIFLASGKIFTTGFSRMSERQIALWDPNNLEEPIALQ 258 (472)
T ss_pred ec-ccccCCCcceeEEeccCceeeeccccccccceeccCcccccCcceeE
Confidence 43 334444455677888999554443 34678899987766655443
No 175
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=98.83 E-value=2.9e-07 Score=107.13 Aligned_cols=276 Identities=15% Similarity=0.174 Sum_probs=158.1
Q ss_pred cEEEEEccCCCceeEeeeeccCcEEEEEEecCCCCCCCCCCccccCcEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCC
Q 003907 85 GFQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQ 164 (787)
Q Consensus 85 G~qVWdv~~~~~~~ells~~dg~V~~v~~lP~P~~~~~~d~F~~srpLLavV~~d~~~~~~~~~~~~~~~~~r~g~~~~~ 164 (787)
.+-||++.+.. .-++.=....+|.++.+.| |..+ +| +.++
T Consensus 223 ~~~vW~~~~p~-~Pe~~~~~~s~v~~~~f~p----------~~p~--ll-~gG~-------------------------- 262 (555)
T KOG1587|consen 223 VLLVWSLKNPN-TPELVLESPSEVTCLKFCP----------FDPN--LL-AGGC-------------------------- 262 (555)
T ss_pred eEEEEecCCCC-CceEEEecCCceeEEEecc----------CCcc--eE-Eeec--------------------------
Confidence 58999998764 3444444456799999887 4334 44 3221
Q ss_pred CCCCCCCCCEEEEEECCCCeE--EEEEe-----CCCcEEEEEecC-----CeEEEEeCCeEEEEECCCCceeE-EEEecC
Q 003907 165 SGNCVNSPTAVRFYSFQSHCY--EHVLR-----FRSSVCMVRCSP-----RIVAVGLATQIYCFDALTLENKF-SVLTYP 231 (787)
Q Consensus 165 ~~~~~~~p~tVrlWdlktg~~--v~tL~-----f~s~V~sV~~s~-----~~LaV~~~~~I~iwD~~T~e~l~-tl~t~p 231 (787)
..+.|-+||++.+.. ...+. ++.+|.+|.+.. +++.++.|++|..|++.-+.+.. .+...+
T Consensus 263 ------y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~ 336 (555)
T KOG1587|consen 263 ------YNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLES 336 (555)
T ss_pred ------cCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeeeeccccccchhhccccc
Confidence 125899999998876 44443 456888888744 47778889999999877655422 222211
Q ss_pred CcccCCCCccccccccceeEEcc----ceEEEecCCceecCcceeccccCCCCCcCCCcCCCCCceeEeeehhhhhhhhc
Q 003907 232 VPQLAGQGAVGINVGYGPMAVGP----RWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAA 307 (787)
Q Consensus 232 ~p~~~~~~~~~~~~~~~~lAlsp----r~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~sp~~g~lva~~a~d~sk~la~ 307 (787)
.+....+ .....+...++|-+ +++. ++....+.. ...+.+++.. .
T Consensus 337 ~~~~~~~--~~~~~~~t~~~F~~~~p~~FiV-GTe~G~v~~---~~r~g~~~~~----------------------~--- 385 (555)
T KOG1587|consen 337 KKHKGQQ--SSKAVGATSLKFEPTDPNHFIV-GTEEGKVYK---GCRKGYTPAP----------------------E--- 385 (555)
T ss_pred ccccccc--cccccceeeEeeccCCCceEEE-EcCCcEEEE---EeccCCcccc----------------------c---
Confidence 1100000 00011233455543 3332 222211110 0112221100 0
Q ss_pred ccceeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECC-CCcEEEEeccCCCCeEEEEECCC-CCEEE
Q 003907 308 GLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFV-TRAIISQFKAHTSPISALCFDPS-GTLLV 385 (787)
Q Consensus 308 G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~-s~~~v~~~~aH~~pIsaLaFSpd-G~lLA 385 (787)
+ .+..+..-..-.+....+.++|-...+ +.+ ..|-+|+||.-. ...++..+..+...|.+++|||. -..+|
T Consensus 386 -~--~~~~~~~~~~h~g~v~~v~~nPF~~k~---fls-~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~ 458 (555)
T KOG1587|consen 386 -V--SYKGHSTFITHIGPVYAVSRNPFYPKN---FLS-VGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFA 458 (555)
T ss_pred -c--cccccccccccCcceEeeecCCCccce---eee-eccceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEE
Confidence 0 000011111112222333333322221 122 238999999988 67788888899999999999995 46788
Q ss_pred EEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEeCCC
Q 003907 386 TASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSP 462 (787)
Q Consensus 386 TaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~~ 462 (787)
++..+|+ |.|||+..... .++.....+ ......+.|+++|+.|++|...|++|+|++..
T Consensus 459 ~~d~~G~-l~iWDLl~~~~---------------~Pv~s~~~~--~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 459 TVDGDGN-LDIWDLLQDDE---------------EPVLSQKVC--SPALTRVRWSPNGKLLAVGDANGTTHILKLSE 517 (555)
T ss_pred EEcCCCc-eehhhhhcccc---------------CCccccccc--ccccceeecCCCCcEEEEecCCCcEEEEEcCc
Confidence 8888776 99999954210 122222222 23467788999999999999999999999964
No 176
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=98.83 E-value=4.6e-06 Score=88.31 Aligned_cols=223 Identities=16% Similarity=0.234 Sum_probs=145.9
Q ss_pred EecC-cEEEEEccCCCceeEeeeeccCcEEEEEEecCCCCCCCCCCccccCcEEEEEEcCCCCCCCCCCCcCCCCCcccC
Q 003907 81 GYQN-GFQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDG 159 (787)
Q Consensus 81 G~~~-G~qVWdv~~~~~~~ells~~dg~V~~v~~lP~P~~~~~~d~F~~srpLLavV~~d~~~~~~~~~~~~~~~~~r~g 159 (787)
+..+ .+++||+.........+..|...|..+.+.|+. ..++. +..
T Consensus 130 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-------------~~~~~--~~~------------------- 175 (466)
T COG2319 130 SSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDG-------------KLLAS--GSS------------------- 175 (466)
T ss_pred CCCCccEEEEEecCCCeEEEEEecCcccEEEEEECCCC-------------CEEEe--cCC-------------------
Confidence 4424 489999965245566777888899999888642 13333 210
Q ss_pred CcCCCCCCCCCCCCEEEEEECCCCeEEEEEeC-CCcEEEEEecCC---eEEE-EeCCeEEEEECCCCceeE-EEEecCCc
Q 003907 160 MMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRF-RSSVCMVRCSPR---IVAV-GLATQIYCFDALTLENKF-SVLTYPVP 233 (787)
Q Consensus 160 ~~~~~~~~~~~~p~tVrlWdlktg~~v~tL~f-~s~V~sV~~s~~---~LaV-~~~~~I~iwD~~T~e~l~-tl~t~p~p 233 (787)
..+.+++|++.++..+..+.. ...|..+++++. +++. +.+..|++||..+++.+. .+..|...
T Consensus 176 -----------~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~ 244 (466)
T COG2319 176 -----------LDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDS 244 (466)
T ss_pred -----------CCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcc
Confidence 136899999999899998986 468999999873 3333 346679999888666555 23332221
Q ss_pred ccCCCCccccccccceeEEccceEEEecCCceecCcceeccccCCCCCcCCCcCCCCCceeEeeehhhhhhhhcccceee
Q 003907 234 QLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTL 313 (787)
Q Consensus 234 ~~~~~~~~~~~~~~~~lAlspr~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~sp~~g~lva~~a~d~sk~la~G~~ktl 313 (787)
. +. .+.. .+ .
T Consensus 245 --------------~-~~------~~~~---------------------------~~-~--------------------- 254 (466)
T COG2319 245 --------------V-VS------SFSP---------------------------DG-S--------------------- 254 (466)
T ss_pred --------------e-eE------eECC---------------------------CC-C---------------------
Confidence 0 00 0110 00 0
Q ss_pred cccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECCCCcE-EEEeccCCCCeEEEEECCCCCEEEEEEcCCC
Q 003907 314 SKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAI-ISQFKAHTSPISALCFDPSGTLLVTASVYGN 392 (787)
Q Consensus 314 s~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~-v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~ 392 (787)
....+..++.+++||+..... +..+..|..+|.++.|+|++..+++++.| .
T Consensus 255 ---------------------------~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d-~ 306 (466)
T COG2319 255 ---------------------------LLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSD-G 306 (466)
T ss_pred ---------------------------EEEEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECCCCCEEEEeeCC-C
Confidence 001235688999999987664 55557899999999999999999998887 4
Q ss_pred EEEEEeCCCCcccCCCCCCccccCCcceEEEEEe-cccccccEEEEEEccCCCEEEEE-eCCCeEEEEeCCCCC
Q 003907 393 NINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLH-RGITSATIQDICFSHYSQWIAIV-SSKGTCHVFVLSPFG 464 (787)
Q Consensus 393 ~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~-rG~~~a~I~slaFSpDg~~LAs~-S~dgTVhIwdl~~~g 464 (787)
.+++||+... ....... .++ ...|..+.|++++..++.+ ..|+.+.+|++....
T Consensus 307 ~~~~~~~~~~-----------------~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 362 (466)
T COG2319 307 TVRLWDLETG-----------------KLLSSLTLKGH-EGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGK 362 (466)
T ss_pred cEEEEEcCCC-----------------ceEEEeeeccc-CCceEEEEECCCCCEEEEeecCCCcEEeeecCCCc
Confidence 5999987531 1122221 222 2258999995443566666 688999999988654
No 177
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=98.82 E-value=1.6e-08 Score=106.97 Aligned_cols=129 Identities=21% Similarity=0.279 Sum_probs=85.9
Q ss_pred ccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCc---
Q 003907 342 GADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSS--- 418 (787)
Q Consensus 342 ~~s~~~dG~V~IwDl~s~~~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s--- 418 (787)
++.+..+|.|.|||+.+...-..|.+|..||.+||||+||++|+|+|. +..|.+||+........-.-.+..|...
T Consensus 38 lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~-D~si~lwDl~~gs~l~rirf~spv~~~q~hp 116 (405)
T KOG1273|consen 38 LAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSR-DWSIKLWDLLKGSPLKRIRFDSPVWGAQWHP 116 (405)
T ss_pred eeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecC-CceeEEEeccCCCceeEEEccCccceeeecc
Confidence 457889999999999999988899999999999999999999999999 5669999986421000000000011100
Q ss_pred -c--eE----------EEEEecccc-----------cccEEEEEEccCCCEEEEEeCCCeEEEEeCCCCCCcccccc
Q 003907 419 -H--VH----------LYKLHRGIT-----------SATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQT 471 (787)
Q Consensus 419 -~--~~----------l~~l~rG~~-----------~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~~~gg~~~~~~ 471 (787)
. .. +..+.-+.+ +..-.+..|.+-|++|.+|..+|.++|++.++.+....++.
T Consensus 117 ~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas~ri 193 (405)
T KOG1273|consen 117 RKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAETLECVASFRI 193 (405)
T ss_pred ccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcceEEEEecchheeeeeeee
Confidence 0 00 011110000 00012234778899999999999999999998866655544
No 178
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=98.79 E-value=2.7e-08 Score=108.15 Aligned_cols=130 Identities=15% Similarity=0.175 Sum_probs=93.0
Q ss_pred ccccCCCceEEEEECCCC---------cEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCc
Q 003907 342 GADMDNAGIVVVKDFVTR---------AIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHK 412 (787)
Q Consensus 342 ~~s~~~dG~V~IwDl~s~---------~~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~ 412 (787)
++++..|..|+||-+... +.+..|..|+..|+++.|+|+|.+||||+++| .|.+|......... ....
T Consensus 29 laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g-~v~lWk~~~~~~~~--~d~e 105 (434)
T KOG1009|consen 29 LATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGG-EVFLWKQGDVRIFD--ADTE 105 (434)
T ss_pred eecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCc-eEEEEEecCcCCcc--ccch
Confidence 456778889999987542 24567788999999999999999999999955 59999764210000 0000
Q ss_pred cccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEeCCCCCCccccccccCC
Q 003907 413 YDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQTLSSQ 475 (787)
Q Consensus 413 ~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~~~gg~~~~~~H~~~ 475 (787)
.+.....+.+.+..|| +...|++++|+||++++++++.|.++++||+....-...+..|..-
T Consensus 106 ~~~~ke~w~v~k~lr~-h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~y 167 (434)
T KOG1009|consen 106 ADLNKEKWVVKKVLRG-HRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHY 167 (434)
T ss_pred hhhCccceEEEEEecc-cccchhhhhccCCCceeeeeeccceEEEEEeccceeEeeccccccc
Confidence 1111222455555566 4568999999999999999999999999999876555555666543
No 179
>PRK02889 tolB translocation protein TolB; Provisional
Probab=98.74 E-value=4.8e-06 Score=95.01 Aligned_cols=71 Identities=18% Similarity=0.302 Sum_probs=45.9
Q ss_pred EEEEECCCCCEEEEEEcCCC--EEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEe
Q 003907 373 SALCFDPSGTLLVTASVYGN--NINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVS 450 (787)
Q Consensus 373 saLaFSpdG~lLATaS~dG~--~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~LAs~S 450 (787)
...+|||||++||..+.++. .|.+||+.. + ....+..+ ....+.+|+|||++|+.++
T Consensus 331 ~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~-------g-----------~~~~lt~~---~~~~~p~~spdg~~l~~~~ 389 (427)
T PRK02889 331 TSPRISPDGKLLAYISRVGGAFKLYVQDLAT-------G-----------QVTALTDT---TRDESPSFAPNGRYILYAT 389 (427)
T ss_pred CceEECCCCCEEEEEEccCCcEEEEEEECCC-------C-----------CeEEccCC---CCccCceECCCCCEEEEEE
Confidence 35789999999998776543 588899843 2 11222222 1246789999999999888
Q ss_pred CCC-eEEEEeCCCCC
Q 003907 451 SKG-TCHVFVLSPFG 464 (787)
Q Consensus 451 ~dg-TVhIwdl~~~g 464 (787)
.++ .-.++-+...+
T Consensus 390 ~~~g~~~l~~~~~~g 404 (427)
T PRK02889 390 QQGGRSVLAAVSSDG 404 (427)
T ss_pred ecCCCEEEEEEECCC
Confidence 654 33444444333
No 180
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=98.72 E-value=3e-07 Score=98.35 Aligned_cols=105 Identities=14% Similarity=0.263 Sum_probs=74.6
Q ss_pred CCeEEEEEecCc-EEEEEccCCCceeEeeeeccCcEEEEEEecCCCCCCCCCCccccCcEEEEEEcCCCCCCCCCCCcCC
Q 003907 74 FKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSH 152 (787)
Q Consensus 74 ~~~vL~lG~~~G-~qVWdv~~~~~~~ells~~dg~V~~v~~lP~P~~~~~~d~F~~srpLLavV~~d~~~~~~~~~~~~~ 152 (787)
..+.+++|+.+| +++||... ++..+.++.+.+.+..++|+-. +.|-++.+++
T Consensus 39 ~e~~vav~lSngsv~lyd~~t-g~~l~~fk~~~~~~N~vrf~~~------------ds~h~v~s~s-------------- 91 (376)
T KOG1188|consen 39 FETAVAVSLSNGSVRLYDKGT-GQLLEEFKGPPATTNGVRFISC------------DSPHGVISCS-------------- 91 (376)
T ss_pred cceeEEEEecCCeEEEEeccc-hhhhheecCCCCcccceEEecC------------CCCCeeEEec--------------
Confidence 346789999887 99999965 7788889988888888887731 1233333232
Q ss_pred CCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCC----cE--EEEEecCCeEEEEeCC-----eEEEEECCCC
Q 003907 153 LGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRS----SV--CMVRCSPRIVAVGLAT-----QIYCFDALTL 221 (787)
Q Consensus 153 ~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~v~tL~f~s----~V--~sV~~s~~~LaV~~~~-----~I~iwD~~T~ 221 (787)
++++||+||+++...+..+.+.. +- +++-|+.++++.+.+. .+++||++.-
T Consensus 92 ------------------sDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~ 153 (376)
T KOG1188|consen 92 ------------------SDGTVRLWDIRSQAESARISWTQQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSE 153 (376)
T ss_pred ------------------cCCeEEEEEeecchhhhheeccCCCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccc
Confidence 24699999999998888776542 22 4444567888888753 4999999865
Q ss_pred ce
Q 003907 222 EN 223 (787)
Q Consensus 222 e~ 223 (787)
+.
T Consensus 154 qq 155 (376)
T KOG1188|consen 154 QQ 155 (376)
T ss_pred cc
Confidence 53
No 181
>PRK04922 tolB translocation protein TolB; Provisional
Probab=98.70 E-value=5.9e-06 Score=94.39 Aligned_cols=51 Identities=25% Similarity=0.262 Sum_probs=36.4
Q ss_pred CEEEEEECCCCeEEEEEeCCCcEEEEEecC--CeEEEEe--CC--eEEEEECCCCce
Q 003907 173 TAVRFYSFQSHCYEHVLRFRSSVCMVRCSP--RIVAVGL--AT--QIYCFDALTLEN 223 (787)
Q Consensus 173 ~tVrlWdlktg~~v~tL~f~s~V~sV~~s~--~~LaV~~--~~--~I~iwD~~T~e~ 223 (787)
..|.+||+++++......+.+...++++++ +.|++.. ++ +|++||+.+++.
T Consensus 228 ~~l~~~dl~~g~~~~l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~ 284 (433)
T PRK04922 228 SAIYVQDLATGQRELVASFRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQL 284 (433)
T ss_pred cEEEEEECCCCCEEEeccCCCCccCceECCCCCEEEEEEeCCCCceEEEEECCCCCe
Confidence 479999999988655445666666788887 5566543 22 599999988763
No 182
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=98.69 E-value=5.5e-07 Score=94.69 Aligned_cols=104 Identities=14% Similarity=0.223 Sum_probs=81.7
Q ss_pred ccCCCceEEEEECCCCcEEEEe---ccCCCCeEEEEECC-CCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcc
Q 003907 344 DMDNAGIVVVKDFVTRAIISQF---KAHTSPISALCFDP-SGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSH 419 (787)
Q Consensus 344 s~~~dG~V~IwDl~s~~~v~~~---~aH~~pIsaLaFSp-dG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~ 419 (787)
+.+.||.|++||++..+--..+ .....|+..|++++ |-++|||-..|...|.|-|++.- +
T Consensus 214 SvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P------~---------- 277 (364)
T KOG0290|consen 214 SVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVP------C---------- 277 (364)
T ss_pred EecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCC------C----------
Confidence 4467999999999986543333 23256899999988 56789999888888999999642 2
Q ss_pred eEEEEEecccccccEEEEEEccCC-CEEEEEeCCCeEEEEeCCCCCC
Q 003907 420 VHLYKLHRGITSATIQDICFSHYS-QWIAIVSSKGTCHVFVLSPFGG 465 (787)
Q Consensus 420 ~~l~~l~rG~~~a~I~slaFSpDg-~~LAs~S~dgTVhIwdl~~~gg 465 (787)
..+.+|++ |.+.|..|+|.|.+ ..|+++++|.-+-|||+.....
T Consensus 278 tpva~L~~--H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~ 322 (364)
T KOG0290|consen 278 TPVARLRN--HQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPR 322 (364)
T ss_pred cceehhhc--CcccccceEecCCCCceeeecCCcceEEEEecccccc
Confidence 36677764 56789999999975 7899999999999999987644
No 183
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=98.69 E-value=1.8e-06 Score=101.50 Aligned_cols=102 Identities=20% Similarity=0.252 Sum_probs=78.7
Q ss_pred ccccCCCceEEEEECCC----CcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCC
Q 003907 342 GADMDNAGIVVVKDFVT----RAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNS 417 (787)
Q Consensus 342 ~~s~~~dG~V~IwDl~s----~~~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~ 417 (787)
.+.++.||.|.||.--. ......|.=|..+|.+++|++||.+|.||+.+| .+-+|.+.+ +
T Consensus 220 ~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~-VLv~Wq~~T-------~-------- 283 (792)
T KOG1963|consen 220 LAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREG-VLVLWQLET-------G-------- 283 (792)
T ss_pred EEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccce-EEEEEeecC-------C--------
Confidence 45778899999995322 224556777899999999999999999999966 688999854 2
Q ss_pred cceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEeCCCCC
Q 003907 418 SHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFG 464 (787)
Q Consensus 418 s~~~l~~l~rG~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~~~g 464 (787)
.+. -|-| -.+.|..+.+|||+...+....|..||+-......
T Consensus 284 --~kq-fLPR--Lgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~ 325 (792)
T KOG1963|consen 284 --KKQ-FLPR--LGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLE 325 (792)
T ss_pred --Ccc-cccc--cCCeeEEEEEcCCCCeEEEEecCceEEEEeccchh
Confidence 111 1222 23679999999999999999999999998875543
No 184
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=98.68 E-value=8.7e-07 Score=90.54 Aligned_cols=126 Identities=21% Similarity=0.295 Sum_probs=87.8
Q ss_pred EEEEEECC-CCeEEEEEeC--CCcEEEEEecC--CeEEEEe---CCeEEEEECCCCceeEEEEecCCcccCCCCcccccc
Q 003907 174 AVRFYSFQ-SHCYEHVLRF--RSSVCMVRCSP--RIVAVGL---ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINV 245 (787)
Q Consensus 174 tVrlWdlk-tg~~v~tL~f--~s~V~sV~~s~--~~LaV~~---~~~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~ 245 (787)
...||.++ .+..+..++. .++|.+++++| +.+|+.. ..+|.+||+. ++.++++...+
T Consensus 38 ~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~-~~~i~~~~~~~-------------- 102 (194)
T PF08662_consen 38 EFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK-GKKIFSFGTQP-------------- 102 (194)
T ss_pred eEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEEcCc-ccEeEeecCCC--------------
Confidence 44555552 2345566654 45799999998 4565543 3479999996 66666654321
Q ss_pred ccceeEEcc--ceEEEecCCceecCcceeccccCCCCCcCCCcCCCCCceeEeeehhhhhhhhcccceeecccccccCCC
Q 003907 246 GYGPMAVGP--RWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPD 323 (787)
Q Consensus 246 ~~~~lAlsp--r~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~ 323 (787)
.+.+.++| ++||.++..
T Consensus 103 -~n~i~wsP~G~~l~~~g~~------------------------------------------------------------ 121 (194)
T PF08662_consen 103 -RNTISWSPDGRFLVLAGFG------------------------------------------------------------ 121 (194)
T ss_pred -ceEEEECCCCCEEEEEEcc------------------------------------------------------------
Confidence 24577877 677776521
Q ss_pred CCCCCcccCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcC-----CCEEEEEe
Q 003907 324 GSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVY-----GNNINIFR 398 (787)
Q Consensus 324 ~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~v~~~~aH~~pIsaLaFSpdG~lLATaS~d-----G~~IrVWd 398 (787)
...|.|.+||+.+.+.+.++... .++.++|||||++|+|++.. ++.++||+
T Consensus 122 ----------------------n~~G~l~~wd~~~~~~i~~~~~~--~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~ 177 (194)
T PF08662_consen 122 ----------------------NLNGDLEFWDVRKKKKISTFEHS--DATDVEWSPDGRYLATATTSPRLRVDNGFKIWS 177 (194)
T ss_pred ----------------------CCCcEEEEEECCCCEEeeccccC--cEEEEEEcCCCCEEEEEEeccceeccccEEEEE
Confidence 23478999999998888877543 47899999999999999763 45689999
Q ss_pred C
Q 003907 399 I 399 (787)
Q Consensus 399 i 399 (787)
.
T Consensus 178 ~ 178 (194)
T PF08662_consen 178 F 178 (194)
T ss_pred e
Confidence 7
No 185
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=98.67 E-value=8.1e-07 Score=105.74 Aligned_cols=106 Identities=14% Similarity=0.177 Sum_probs=75.0
Q ss_pred cccCCCceEEEEECCCCcE--EEEeccCC--C-CeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCC
Q 003907 343 ADMDNAGIVVVKDFVTRAI--ISQFKAHT--S-PISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNS 417 (787)
Q Consensus 343 ~s~~~dG~V~IwDl~s~~~--v~~~~aH~--~-pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~ 417 (787)
.+++++|.|++||++.... .-++..|. + .+++|..+++...+|+|+. + .|+||++. |..-..
T Consensus 1273 vSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q-~ikIy~~~--------G~~l~~--- 1339 (1387)
T KOG1517|consen 1273 VSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-Q-LIKIYSLS--------GEQLNI--- 1339 (1387)
T ss_pred eeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc-c-eEEEEecC--------hhhhcc---
Confidence 3578899999999987432 23344554 4 5999999999999999997 4 59999984 210000
Q ss_pred cceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEeCCCC
Q 003907 418 SHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPF 463 (787)
Q Consensus 418 s~~~l~~l~rG~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~~~ 463 (787)
.+-+...-|.....+.|++|+|---.||+|+.|.+|.||...+.
T Consensus 1340 --~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k~ 1383 (1387)
T KOG1517|consen 1340 --IKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEKP 1383 (1387)
T ss_pred --cccCcccccCcCCCcceeeecchhHhhhhccCCceEEEeecCCc
Confidence 00111111222335799999999999999999999999987654
No 186
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=98.66 E-value=2e-06 Score=90.47 Aligned_cols=103 Identities=19% Similarity=0.237 Sum_probs=82.0
Q ss_pred CCCceEEEEECCCCcEEEEec-cCCCCeEEEEECCCCC-EEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEE
Q 003907 346 DNAGIVVVKDFVTRAIISQFK-AHTSPISALCFDPSGT-LLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLY 423 (787)
Q Consensus 346 ~~dG~V~IwDl~s~~~v~~~~-aH~~pIsaLaFSpdG~-lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~ 423 (787)
..+++++.||+++.+....|. +|...|..|.|+|+-. +||||++||. |||||++.. ..++.
T Consensus 190 t~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgy-vriWD~R~t----------------k~pv~ 252 (370)
T KOG1007|consen 190 TSDSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGY-VRIWDTRKT----------------KFPVQ 252 (370)
T ss_pred eCCCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCcc-EEEEeccCC----------------Ccccc
Confidence 468899999999988777774 8999999999999855 6899998776 999998541 13566
Q ss_pred EEecccccccEEEEEEccC-CCEEEEEeCCCeEEEEeCCCCCCcc
Q 003907 424 KLHRGITSATIQDICFSHY-SQWIAIVSSKGTCHVFVLSPFGGDS 467 (787)
Q Consensus 424 ~l~rG~~~a~I~slaFSpD-g~~LAs~S~dgTVhIwdl~~~gg~~ 467 (787)
++. + +...|+++.|.|- .+.|.+++.|..|.+|.......++
T Consensus 253 el~-~-HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~ 295 (370)
T KOG1007|consen 253 ELP-G-HSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQ 295 (370)
T ss_pred ccC-C-CceEEEEEEecCccceEEEecCCCceeEEEecccccccc
Confidence 664 3 3457999999984 5789999999999999887655444
No 187
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=98.65 E-value=2.1e-06 Score=102.29 Aligned_cols=102 Identities=20% Similarity=0.212 Sum_probs=75.7
Q ss_pred cCCCceEEEEECCCC---cEEEEeccCCCC--eEEEEECCCCCE-EEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCc
Q 003907 345 MDNAGIVVVKDFVTR---AIISQFKAHTSP--ISALCFDPSGTL-LVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSS 418 (787)
Q Consensus 345 ~~~dG~V~IwDl~s~---~~v~~~~aH~~p--IsaLaFSpdG~l-LATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s 418 (787)
|-.||.|++||.+.. ..+...+.|... |..+.|.++|-- |++||.+|. |++||++.....+ .
T Consensus 1227 GfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~-I~~~DlR~~~~e~-----------~ 1294 (1387)
T KOG1517|consen 1227 GFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGD-IQLLDLRMSSKET-----------F 1294 (1387)
T ss_pred eecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCe-EEEEecccCcccc-----------c
Confidence 446899999998753 357778899887 999999998876 999999886 9999996421000 0
Q ss_pred ceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEeCCC
Q 003907 419 HVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSP 462 (787)
Q Consensus 419 ~~~l~~l~rG~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~~ 462 (787)
....+...-|. ..++|..+++...||+|+. +.|+||++..
T Consensus 1295 ~~iv~~~~yGs---~lTal~VH~hapiiAsGs~-q~ikIy~~~G 1334 (1387)
T KOG1517|consen 1295 LTIVAHWEYGS---ALTALTVHEHAPIIASGSA-QLIKIYSLSG 1334 (1387)
T ss_pred ceeeeccccCc---cceeeeeccCCCeeeecCc-ceEEEEecCh
Confidence 01122222231 3788999999999999999 9999999863
No 188
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=98.65 E-value=2.6e-07 Score=94.35 Aligned_cols=94 Identities=15% Similarity=0.287 Sum_probs=72.1
Q ss_pred ccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCC--CEEEEEeCCCCcccCCCCCCccccCCcceE
Q 003907 344 DMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYG--NNINIFRIMPSCMRSGSGNHKYDWNSSHVH 421 (787)
Q Consensus 344 s~~~dG~V~IwDl~s~~~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG--~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~ 421 (787)
.+..++.|.+||+. .+.+..|. ..+++.|.|||+|++||+|+.++ ..|.+||+.. . ..
T Consensus 78 ~g~~~~~v~lyd~~-~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~-------~----------~~ 137 (194)
T PF08662_consen 78 YGSMPAKVTLYDVK-GKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRK-------K----------KK 137 (194)
T ss_pred EccCCcccEEEcCc-ccEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCC-------C----------EE
Confidence 34556799999996 66667764 56889999999999999998632 2499999853 1 34
Q ss_pred EEEEecccccccEEEEEEccCCCEEEEEeC------CCeEEEEeCC
Q 003907 422 LYKLHRGITSATIQDICFSHYSQWIAIVSS------KGTCHVFVLS 461 (787)
Q Consensus 422 l~~l~rG~~~a~I~slaFSpDg~~LAs~S~------dgTVhIwdl~ 461 (787)
+.+... ..+.+++|||||++|++++. |..++||++.
T Consensus 138 i~~~~~----~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~ 179 (194)
T PF08662_consen 138 ISTFEH----SDATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQ 179 (194)
T ss_pred eecccc----CcEEEEEEcCCCCEEEEEEeccceeccccEEEEEec
Confidence 544432 24789999999999999975 6789999985
No 189
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=98.64 E-value=4e-06 Score=91.73 Aligned_cols=102 Identities=18% Similarity=0.206 Sum_probs=65.8
Q ss_pred CceEEEEECCCC----cEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEE
Q 003907 348 AGIVVVKDFVTR----AIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLY 423 (787)
Q Consensus 348 dG~V~IwDl~s~----~~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~ 423 (787)
++.|.+||+.+. +.+..+.+ ......++|+|+|++|.+++..+..|.|||+... +. .........
T Consensus 101 ~~~v~v~~~~~~g~~~~~~~~~~~-~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~------g~----l~~~~~~~~ 169 (330)
T PRK11028 101 ANCVSVSPLDKDGIPVAPIQIIEG-LEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDD------GH----LVAQEPAEV 169 (330)
T ss_pred CCeEEEEEECCCCCCCCceeeccC-CCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCC------Cc----ccccCCCce
Confidence 567778877532 22333332 2345678999999999888876678999998541 10 000000111
Q ss_pred EEecccccccEEEEEEccCCCEEEEEeC-CCeEEEEeCCCC
Q 003907 424 KLHRGITSATIQDICFSHYSQWIAIVSS-KGTCHVFVLSPF 463 (787)
Q Consensus 424 ~l~rG~~~a~I~slaFSpDg~~LAs~S~-dgTVhIwdl~~~ 463 (787)
....| .....++|+|||++|+++.. +++|.+|+++..
T Consensus 170 ~~~~g---~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~ 207 (330)
T PRK11028 170 TTVEG---AGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDP 207 (330)
T ss_pred ecCCC---CCCceEEECCCCCEEEEEecCCCEEEEEEEeCC
Confidence 22223 22567999999999988876 899999999864
No 190
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.64 E-value=2.9e-05 Score=82.91 Aligned_cols=117 Identities=17% Similarity=0.235 Sum_probs=76.1
Q ss_pred ccCCCce-EEEEECCCCcEEEEeccC--CCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcc-cC-CCCCCccc-c--
Q 003907 344 DMDNAGI-VVVKDFVTRAIISQFKAH--TSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCM-RS-GSGNHKYD-W-- 415 (787)
Q Consensus 344 s~~~dG~-V~IwDl~s~~~v~~~~aH--~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~-~~-~~g~~~~~-~-- 415 (787)
++++.|+ |||||..+++.+..|+.- ...|.+|+|||++.+||.+|++|+ ++||.++.... .. .+-.+... +
T Consensus 198 TaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdKgT-lHiF~l~~~~~~~~~~SSl~~~~~~lp 276 (346)
T KOG2111|consen 198 TASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSWLAVSSDKGT-LHIFSLRDTENTEDESSSLSFKRLVLP 276 (346)
T ss_pred EeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCccEEEEEcCCCe-EEEEEeecCCCCccccccccccccccc
Confidence 4455665 899999999999999743 357999999999999999999887 99999875321 00 00000000 0
Q ss_pred --CCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEeCCCC
Q 003907 416 --NSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPF 463 (787)
Q Consensus 416 --~~s~~~l~~l~rG~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~~~ 463 (787)
-.+.+-+.+++- ......-++|-.+.+-+++...||+-+=+.+.+.
T Consensus 277 ky~~S~wS~~~f~l--~~~~~~~~~fg~~~nsvi~i~~Dgsy~k~~f~~~ 324 (346)
T KOG2111|consen 277 KYFSSEWSFAKFQL--PQGTQCIIAFGSETNTVIAICADGSYYKFKFDPK 324 (346)
T ss_pred hhcccceeEEEEEc--cCCCcEEEEecCCCCeEEEEEeCCcEEEEEeccc
Confidence 001122222221 1223566889888677777778898877666654
No 191
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.61 E-value=1.5e-06 Score=92.04 Aligned_cols=39 Identities=15% Similarity=0.389 Sum_probs=35.3
Q ss_pred cEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeC
Q 003907 360 AIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRI 399 (787)
Q Consensus 360 ~~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi 399 (787)
+.+..+..|.++|..+.|+-.|+.|++.+.||. +|+|..
T Consensus 279 ~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~-VRLWka 317 (361)
T KOG2445|consen 279 EKVSELDDHNGEVWRVRWNMTGTILSSTGDDGC-VRLWKA 317 (361)
T ss_pred EEeeeccCCCCceEEEEEeeeeeEEeecCCCce-eeehhh
Confidence 457788999999999999999999999999886 999985
No 192
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=98.61 E-value=9.6e-07 Score=98.84 Aligned_cols=202 Identities=19% Similarity=0.235 Sum_probs=130.7
Q ss_pred CeEEEEEecCc-EEEEEccCCCceeEeeeeccCcEEEEEEecCCCCCCCCCCccccCcEEEEEEcCCCCCCCCCCCcCCC
Q 003907 75 KQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHL 153 (787)
Q Consensus 75 ~~vL~lG~~~G-~qVWdv~~~~~~~ells~~dg~V~~v~~lP~P~~~~~~d~F~~srpLLavV~~d~~~~~~~~~~~~~~ 153 (787)
..+|++++.+| |.|.+- .+.+..-++.|.|.|.+-.+.|+.. -|| . +|+
T Consensus 75 ~d~~~i~s~DGkf~il~k--~~rVE~sv~AH~~A~~~gRW~~dGt------------gLl-t-~GE-------------- 124 (737)
T KOG1524|consen 75 SDTLLICSNDGRFVILNK--SARVERSISAHAAAISSGRWSPDGA------------GLL-T-AGE-------------- 124 (737)
T ss_pred cceEEEEcCCceEEEecc--cchhhhhhhhhhhhhhhcccCCCCc------------eee-e-ecC--------------
Confidence 34778887777 888764 6788889999999999999997642 143 2 232
Q ss_pred CCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEE-eCCCcEEEEEecC--CeEEEEeCCeEEEEECCCCceeEEEEec
Q 003907 154 GGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVL-RFRSSVCMVRCSP--RIVAVGLATQIYCFDALTLENKFSVLTY 230 (787)
Q Consensus 154 ~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~v~tL-~f~s~V~sV~~s~--~~LaV~~~~~I~iwD~~T~e~l~tl~t~ 230 (787)
++.|++|+ ++|-+..++ ++..+|+++++.| .-++-+..++++|=-+.-...
T Consensus 125 ------------------DG~iKiWS-rsGMLRStl~Q~~~~v~c~~W~p~S~~vl~c~g~h~~IKpL~~n~k------- 178 (737)
T KOG1524|consen 125 ------------------DGVIKIWS-RSGMLRSTVVQNEESIRCARWAPNSNSIVFCQGGHISIKPLAANSK------- 178 (737)
T ss_pred ------------------CceEEEEe-ccchHHHHHhhcCceeEEEEECCCCCceEEecCCeEEEeecccccc-------
Confidence 25899999 566555555 5778999999977 445555555665532111000
Q ss_pred CCcccCCCCccccccccceeEEccceEEEecCCceecCcceeccccCCCCCcCCCcCCCCCceeEeeehhhhhhhhcccc
Q 003907 231 PVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLS 310 (787)
Q Consensus 231 p~p~~~~~~~~~~~~~~~~lAlspr~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~sp~~g~lva~~a~d~sk~la~G~~ 310 (787)
++ +|=|--| .++. +
T Consensus 179 ------------------~i----~WkAHDG--iiL~----~-------------------------------------- 192 (737)
T KOG1524|consen 179 ------------------II----RWRAHDG--LVLS----L-------------------------------------- 192 (737)
T ss_pred ------------------ee----EEeccCc--EEEE----e--------------------------------------
Confidence 00 2322211 0000 0
Q ss_pred eeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcC
Q 003907 311 KTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVY 390 (787)
Q Consensus 311 ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~v~~~~aH~~pIsaLaFSpdG~lLATaS~d 390 (787)
+|.+...-+++++.|-..+|||.. |+.+.+-.+|+.||++++|+|+ +++|.+|-
T Consensus 193 -----------------------~W~~~s~lI~sgGED~kfKvWD~~-G~~Lf~S~~~ey~ITSva~npd-~~~~v~S~- 246 (737)
T KOG1524|consen 193 -----------------------SWSTQSNIIASGGEDFRFKIWDAQ-GANLFTSAAEEYAITSVAFNPE-KDYLLWSY- 246 (737)
T ss_pred -----------------------ecCccccceeecCCceeEEeeccc-CcccccCChhccceeeeeeccc-cceeeeee-
Confidence 011111123466788899999965 5666667789999999999999 77777775
Q ss_pred CCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeE
Q 003907 391 GNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTC 455 (787)
Q Consensus 391 G~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~LAs~S~dgTV 455 (787)
. +.| +. +. ..+.|..++||+||..+++|+..|-+
T Consensus 247 n-t~R-~~-------------------------~p----~~GSifnlsWS~DGTQ~a~gt~~G~v 280 (737)
T KOG1524|consen 247 N-TAR-FS-------------------------SP----RVGSIFNLSWSADGTQATCGTSTGQL 280 (737)
T ss_pred e-eee-ec-------------------------CC----CccceEEEEEcCCCceeeccccCceE
Confidence 2 233 11 11 12358999999999999999998864
No 193
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=98.60 E-value=6.7e-08 Score=109.31 Aligned_cols=100 Identities=22% Similarity=0.296 Sum_probs=79.5
Q ss_pred cccCCCceEEEEECCCC-------cEEEEeccCCCCeEEEEECC-CCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccc
Q 003907 343 ADMDNAGIVVVKDFVTR-------AIISQFKAHTSPISALCFDP-SGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYD 414 (787)
Q Consensus 343 ~s~~~dG~V~IwDl~s~-------~~v~~~~aH~~pIsaLaFSp-dG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~ 414 (787)
+.+..||.|+||.+..+ ++-..|.+|...|.+|.|+| -...||++|.| .+|++||+...
T Consensus 644 AVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd-~Ti~lWDl~~~------------ 710 (1012)
T KOG1445|consen 644 AVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYD-STIELWDLANA------------ 710 (1012)
T ss_pred eecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhcc-ceeeeeehhhh------------
Confidence 45678999999998653 45667889999999999999 46689999994 56999999642
Q ss_pred cCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEeCCC
Q 003907 415 WNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSP 462 (787)
Q Consensus 415 ~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~~ 462 (787)
....+| .|+ +..|.+++|||||+.+|+.+.||+++||.-..
T Consensus 711 -----~~~~~l-~gH-tdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs 751 (1012)
T KOG1445|consen 711 -----KLYSRL-VGH-TDQIFGIAWSPDGRRIATVCKDGTLRVYEPRS 751 (1012)
T ss_pred -----hhhhee-ccC-cCceeEEEECCCCcceeeeecCceEEEeCCCC
Confidence 112233 343 45799999999999999999999999996543
No 194
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=98.59 E-value=1.8e-06 Score=93.83 Aligned_cols=128 Identities=11% Similarity=0.044 Sum_probs=94.3
Q ss_pred CCCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCceeE------eeeeccCcEEEEEEecCCCCCCCCC
Q 003907 52 SEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNE------LVSKRDGPVSFLQMQPFPVKDDGCE 124 (787)
Q Consensus 52 ~~~~~~~v~wa~Fd~l~~~~~~~~~vL~lG~~~G-~qVWdv~~~~~~~e------lls~~dg~V~~v~~lP~P~~~~~~d 124 (787)
.-+|+..|+-+.|+- ...+++++|+.+. +.||++...+-.+. .|.+|...|..|++-|.
T Consensus 77 v~GHt~~vLDi~w~P------fnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPt-------- 142 (472)
T KOG0303|consen 77 VCGHTAPVLDIDWCP------FNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPT-------- 142 (472)
T ss_pred ccCccccccccccCc------cCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeeccc--------
Confidence 456888887666642 1246899999875 99999966553332 34567778899998874
Q ss_pred CccccCcEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCCcEEEEEecC--
Q 003907 125 GFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRSSVCMVRCSP-- 202 (787)
Q Consensus 125 ~F~~srpLLavV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~v~tL~f~s~V~sV~~s~-- 202 (787)
.++.|+..+ .+++|.+||+.||+.+.+|.++.-|+++.||.
T Consensus 143 ----A~NVLlsag---------------------------------~Dn~v~iWnv~tgeali~l~hpd~i~S~sfn~dG 185 (472)
T KOG0303|consen 143 ----APNVLLSAG---------------------------------SDNTVSIWNVGTGEALITLDHPDMVYSMSFNRDG 185 (472)
T ss_pred ----chhhHhhcc---------------------------------CCceEEEEeccCCceeeecCCCCeEEEEEeccCC
Confidence 223554322 23699999999999999999999999999988
Q ss_pred CeEEEEe-CCeEEEEECCCCceeEEEEec
Q 003907 203 RIVAVGL-ATQIYCFDALTLENKFSVLTY 230 (787)
Q Consensus 203 ~~LaV~~-~~~I~iwD~~T~e~l~tl~t~ 230 (787)
.+|+++. |.+|+|||.++++.+..-..|
T Consensus 186 s~l~TtckDKkvRv~dpr~~~~v~e~~~h 214 (472)
T KOG0303|consen 186 SLLCTTCKDKKVRVIDPRRGTVVSEGVAH 214 (472)
T ss_pred ceeeeecccceeEEEcCCCCcEeeecccc
Confidence 5666654 667999999999876655443
No 195
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=98.58 E-value=1.4e-05 Score=87.48 Aligned_cols=301 Identities=17% Similarity=0.238 Sum_probs=159.3
Q ss_pred CCCcEEEEEEeeccCCCCCCCeEEEEEec-CcEEEEEccCC---C---c--eeEeeeeccCcEEEEEEecCCCCCCCCCC
Q 003907 55 LKDQVTWAGFDRLEYGPSVFKQVLLLGYQ-NGFQVLDVEDA---S---N--FNELVSKRDGPVSFLQMQPFPVKDDGCEG 125 (787)
Q Consensus 55 ~~~~v~wa~Fd~l~~~~~~~~~vL~lG~~-~G~qVWdv~~~---~---~--~~ells~~dg~V~~v~~lP~P~~~~~~d~ 125 (787)
+++.|.-+-|.+- . ...|++|.. +-+++|-++.. + . ..-.|++|+..|..+.+.|+.
T Consensus 12 ~~~pv~s~dfq~n-----~-~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~g-------- 77 (434)
T KOG1009|consen 12 DHEPVYSVDFQKN-----S-LNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDG-------- 77 (434)
T ss_pred CCCceEEEEeccC-----c-ccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCc--------
Confidence 4556666667641 1 225666554 46999998543 2 1 223577899999999998752
Q ss_pred ccccCcEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECC--------C-----Ce---EEEEE
Q 003907 126 FRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQ--------S-----HC---YEHVL 189 (787)
Q Consensus 126 F~~srpLLavV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlk--------t-----g~---~v~tL 189 (787)
.+||. |++ .++|.+|-.. + .+ ..+.+
T Consensus 78 -----elLAS--g~D-------------------------------~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~l 119 (434)
T KOG1009|consen 78 -----ELLAS--GGD-------------------------------GGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVL 119 (434)
T ss_pred -----Ceeee--cCC-------------------------------CceEEEEEecCcCCccccchhhhCccceEEEEEe
Confidence 27764 322 1467777544 3 21 22334
Q ss_pred eCC-CcEEEEEecC--CeEEE-EeCCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEcc--ceEEEecCC
Q 003907 190 RFR-SSVCMVRCSP--RIVAV-GLATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP--RWLAYASNT 263 (787)
Q Consensus 190 ~f~-s~V~sV~~s~--~~LaV-~~~~~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~~~~~lAlsp--r~LAyas~~ 263 (787)
.++ ..|+++++++ +++++ +.++.+++||+..++++..+..|..- ..-+|+.| .|+|.=+.+
T Consensus 120 r~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~y-------------vqgvawDpl~qyv~s~s~d 186 (434)
T KOG1009|consen 120 RGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHY-------------VQGVAWDPLNQYVASKSSD 186 (434)
T ss_pred cccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeeccccccc-------------cceeecchhhhhhhhhccC
Confidence 443 6899999988 45555 45778999999999988887766541 12355655 566553322
Q ss_pred ceecCcceeccccCCCCCcCCCcCCCCCceeEeeehh--hhhhhhcccc--------eeecccccc--cCCCCCCCCccc
Q 003907 264 LLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAME--HSKQFAAGLS--------KTLSKYCQE--LLPDGSSSPVSP 331 (787)
Q Consensus 264 ~~l~~~g~~s~q~lt~~~~s~s~sp~~g~lva~~a~d--~sk~la~G~~--------ktls~~~~~--l~p~~s~~~~s~ 331 (787)
...-..+ ..+.. ++-++..+ .++.-+.+-- .++..+..+ ++|+|.-. +..
T Consensus 187 r~~~~~~-~~~~~----------------~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~ll-vtP 248 (434)
T KOG1009|consen 187 RHPEGFS-AKLKQ----------------VIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLL-VTP 248 (434)
T ss_pred cccceee-eeeee----------------eeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEE-Ecc
Confidence 1000000 00000 00000000 0000000000 111111111 23333200 000
Q ss_pred CCccccccccccccCCCceEEEEECCC-CcEEEEeccCCCCeEEEEECC------------------CCCEEEEEEcCCC
Q 003907 332 NSVWKVGRHAGADMDNAGIVVVKDFVT-RAIISQFKAHTSPISALCFDP------------------SGTLLVTASVYGN 392 (787)
Q Consensus 332 s~~~~~~~~~~~s~~~dG~V~IwDl~s-~~~v~~~~aH~~pIsaLaFSp------------------dG~lLATaS~dG~ 392 (787)
+-..++++. ..-.+..+++-.. .+++..+..-..+..++.|+| -+..+|.|.. +
T Consensus 249 ag~~~~g~~-----~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt~-~- 321 (434)
T KOG1009|consen 249 AGLFKVGGG-----VFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIATK-N- 321 (434)
T ss_pred cceeeeCCc-----eeeceeEeeccccccCceeecCCCCcceEEEEeeeeEEEeccccccccccccccceEEEEeec-c-
Confidence 000000000 0012234444332 346666766666777777665 2334666666 3
Q ss_pred EEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEeCCCC
Q 003907 393 NINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPF 463 (787)
Q Consensus 393 ~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~~~ 463 (787)
.+-|||.+.. .+++... +.|-..|++++||+||..|+.+|.||-+-+-.+++.
T Consensus 322 svyvydtq~~-----------------~P~~~v~-nihy~~iTDiaws~dg~~l~vSS~DGyCS~vtfe~~ 374 (434)
T KOG1009|consen 322 SVYVYDTQTL-----------------EPLAVVD-NIHYSAITDIAWSDDGSVLLVSSTDGFCSLVTFEPW 374 (434)
T ss_pred eEEEeccccc-----------------cceEEEe-eeeeeeecceeecCCCcEEEEeccCCceEEEEEcch
Confidence 4889997531 3555443 455567999999999999999999999888777653
No 196
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.57 E-value=9.6e-07 Score=96.75 Aligned_cols=74 Identities=23% Similarity=0.325 Sum_probs=61.2
Q ss_pred CCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEE
Q 003907 370 SPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIV 449 (787)
Q Consensus 370 ~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~LAs~ 449 (787)
..|++|+.|+||+++|-|+.+|. |-|++.... +.++-.++. |...|+.+.|+||.+++++.
T Consensus 282 ~siSsl~VS~dGkf~AlGT~dGs-Vai~~~~~l-----------------q~~~~vk~a-H~~~VT~ltF~Pdsr~~~sv 342 (398)
T KOG0771|consen 282 KSISSLAVSDDGKFLALGTMDGS-VAIYDAKSL-----------------QRLQYVKEA-HLGFVTGLTFSPDSRYLASV 342 (398)
T ss_pred CcceeEEEcCCCcEEEEeccCCc-EEEEEecee-----------------eeeEeehhh-heeeeeeEEEcCCcCccccc
Confidence 57999999999999999999776 899998541 344444443 34479999999999999999
Q ss_pred eCCCeEEEEeCCC
Q 003907 450 SSKGTCHVFVLSP 462 (787)
Q Consensus 450 S~dgTVhIwdl~~ 462 (787)
|.+.+++|..|.-
T Consensus 343 Ss~~~~~v~~l~v 355 (398)
T KOG0771|consen 343 SSDNEAAVTKLAV 355 (398)
T ss_pred ccCCceeEEEEee
Confidence 9999999999864
No 197
>PRK01742 tolB translocation protein TolB; Provisional
Probab=98.56 E-value=2e-06 Score=98.09 Aligned_cols=89 Identities=13% Similarity=0.130 Sum_probs=59.6
Q ss_pred EEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccc
Q 003907 351 VVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGIT 430 (787)
Q Consensus 351 V~IwDl~s~~~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~ 430 (787)
|.+||+.+++ +..+..|...+.+.+|+|||+.|+.++..+...+||++... + .....+ +..
T Consensus 274 Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~------~----------~~~~~l--~~~ 334 (429)
T PRK01742 274 IYVMGANGGT-PSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSAS------G----------GGASLV--GGR 334 (429)
T ss_pred EEEEECCCCC-eEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECC------C----------CCeEEe--cCC
Confidence 4556776655 45566777788899999999988877754445899987431 1 011111 111
Q ss_pred cccEEEEEEccCCCEEEEEeCCCeEEEEeCCC
Q 003907 431 SATIQDICFSHYSQWIAIVSSKGTCHVFVLSP 462 (787)
Q Consensus 431 ~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~~ 462 (787)
. .+.+|||||++|+.++.++. .+||+..
T Consensus 335 -~--~~~~~SpDG~~ia~~~~~~i-~~~Dl~~ 362 (429)
T PRK01742 335 -G--YSAQISADGKTLVMINGDNV-VKQDLTS 362 (429)
T ss_pred -C--CCccCCCCCCEEEEEcCCCE-EEEECCC
Confidence 1 45789999999999888764 4588764
No 198
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=98.56 E-value=0.00016 Score=80.30 Aligned_cols=84 Identities=19% Similarity=0.363 Sum_probs=59.1
Q ss_pred CeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEe
Q 003907 371 PISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVS 450 (787)
Q Consensus 371 pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~LAs~S 450 (787)
....|+++|||++|..+......|-+|++.+. .| ....+..+..+ ...-.+++|+|||++|+++.
T Consensus 246 ~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~-----~g--------~l~~~~~~~~~--G~~Pr~~~~s~~g~~l~Va~ 310 (345)
T PF10282_consen 246 APAEIAISPDGRFLYVSNRGSNSISVFDLDPA-----TG--------TLTLVQTVPTG--GKFPRHFAFSPDGRYLYVAN 310 (345)
T ss_dssp SEEEEEE-TTSSEEEEEECTTTEEEEEEECTT-----TT--------TEEEEEEEEES--SSSEEEEEE-TTSSEEEEEE
T ss_pred CceeEEEecCCCEEEEEeccCCEEEEEEEecC-----CC--------ceEEEEEEeCC--CCCccEEEEeCCCCEEEEEe
Confidence 57889999999999998887778999999431 12 11233333321 12368999999999999887
Q ss_pred -CCCeEEEEeCCCCCCcccc
Q 003907 451 -SKGTCHVFVLSPFGGDSGF 469 (787)
Q Consensus 451 -~dgTVhIwdl~~~gg~~~~ 469 (787)
.+++|.+|+++...|....
T Consensus 311 ~~s~~v~vf~~d~~tG~l~~ 330 (345)
T PF10282_consen 311 QDSNTVSVFDIDPDTGKLTP 330 (345)
T ss_dssp TTTTEEEEEEEETTTTEEEE
T ss_pred cCCCeEEEEEEeCCCCcEEE
Confidence 5679999999876666543
No 199
>PRK00178 tolB translocation protein TolB; Provisional
Probab=98.51 E-value=8.3e-05 Score=84.60 Aligned_cols=51 Identities=18% Similarity=0.188 Sum_probs=36.9
Q ss_pred CEEEEEECCCCeEEEEEeCCCcEEEEEecC--CeEEEEe--CC--eEEEEECCCCce
Q 003907 173 TAVRFYSFQSHCYEHVLRFRSSVCMVRCSP--RIVAVGL--AT--QIYCFDALTLEN 223 (787)
Q Consensus 173 ~tVrlWdlktg~~v~tL~f~s~V~sV~~s~--~~LaV~~--~~--~I~iwD~~T~e~ 223 (787)
..|.+||+.+|+......+.+.+.+.++++ +.|+... ++ .|++||+.+++.
T Consensus 223 ~~l~~~~l~~g~~~~l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~ 279 (430)
T PRK00178 223 PRIFVQNLDTGRREQITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQL 279 (430)
T ss_pred CEEEEEECCCCCEEEccCCCCCcCCeEECCCCCEEEEEEccCCCceEEEEECCCCCe
Confidence 379999999997765455666666788887 5676543 22 599999988763
No 200
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=98.49 E-value=2.9e-06 Score=96.82 Aligned_cols=92 Identities=9% Similarity=0.081 Sum_probs=56.7
Q ss_pred ccCCCCeEE---EEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccc-cccEEEEEEcc
Q 003907 366 KAHTSPISA---LCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGIT-SATIQDICFSH 441 (787)
Q Consensus 366 ~aH~~pIsa---LaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~-~a~I~slaFSp 441 (787)
++|...|.. +-|..|...||||+.-|..|+||||+....- ..+ .......+....+ .-.+.++....
T Consensus 211 kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~-~r~--------ep~~~~~~~t~skrs~G~~nL~lDs 281 (720)
T KOG0321|consen 211 KAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTA-YRQ--------EPRGSDKYPTHSKRSVGQVNLILDS 281 (720)
T ss_pred ccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccc-ccc--------CCCcccCccCcccceeeeEEEEecC
Confidence 455555555 5566788999999995556999999753210 000 0001111100000 11266777777
Q ss_pred CCCEEEEEeCCCeEEEEeCCCCCCc
Q 003907 442 YSQWIAIVSSKGTCHVFVLSPFGGD 466 (787)
Q Consensus 442 Dg~~LAs~S~dgTVhIwdl~~~gg~ 466 (787)
-|.+|.+...|++|..|++...+..
T Consensus 282 sGt~L~AsCtD~sIy~ynm~s~s~s 306 (720)
T KOG0321|consen 282 SGTYLFASCTDNSIYFYNMRSLSIS 306 (720)
T ss_pred CCCeEEEEecCCcEEEEeccccCcC
Confidence 7899988888999999999876543
No 201
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=98.49 E-value=6.8e-06 Score=96.86 Aligned_cols=231 Identities=16% Similarity=0.100 Sum_probs=130.9
Q ss_pred CEEEEEECCCCeEEEEEeCC-CcEEEEEecCC-----eE-EEEeCCeEEEEECCCCceeEEEEecCCcccCCCCcccccc
Q 003907 173 TAVRFYSFQSHCYEHVLRFR-SSVCMVRCSPR-----IV-AVGLATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINV 245 (787)
Q Consensus 173 ~tVrlWdlktg~~v~tL~f~-s~V~sV~~s~~-----~L-aV~~~~~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~ 245 (787)
++|.||+..||++++.|.++ .++..+.+.++ .+ ...+++.|.+||-..++++.++..+-.+
T Consensus 37 ~~V~VyS~~Tg~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llkt~~~~~~v------------ 104 (792)
T KOG1963|consen 37 NFVKVYSTATGECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELLKTFDNNLPV------------ 104 (792)
T ss_pred CEEEEEecchHhhhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEEEEEEecCCce------------
Confidence 58999999999999999876 47888777662 22 3466889999999999998888742211
Q ss_pred ccceeEEcc-----ceEEEecCCceecCcceeccccCCCCCcCCCcCCCCCceeEeeehhhhhhhhcccceeeccccccc
Q 003907 246 GYGPMAVGP-----RWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQEL 320 (787)
Q Consensus 246 ~~~~lAlsp-----r~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l 320 (787)
..+-+.| +-.+|.+... ..+..... .+..++..+..+.++.....++
T Consensus 105 --~~~~~~~~~a~~s~~~~~s~~~------~~~~~~~s--------------------~~~~~q~~~~~~~t~~~~~~d~ 156 (792)
T KOG1963|consen 105 --HALVYKPAQADISANVYVSVED------YSILTTFS--------------------KKLSKQSSRFVLATFDSAKGDF 156 (792)
T ss_pred --eEEEechhHhCccceeEeeccc------ceeeeecc--------------------cccccceeeeEeeeccccchhh
Confidence 1111111 1222222110 00000000 0001111111111110000000
Q ss_pred CCCC-CCCCcccCCccccccccccccCCCceEEEEECCCCcEEE---Ee-ccCCCCeEEEEECCCCCEEEEEEcCCCEEE
Q 003907 321 LPDG-SSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIIS---QF-KAHTSPISALCFDPSGTLLVTASVYGNNIN 395 (787)
Q Consensus 321 ~p~~-s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~v~---~~-~aH~~pIsaLaFSpdG~lLATaS~dG~~Ir 395 (787)
.... -..++..++.+. +.....+..+.+|+..++.... .+ .-|+.++++.+|||+++++|+|..||+ |.
T Consensus 157 ~~~~~~~~~I~~~~~ge-----~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGr-I~ 230 (792)
T KOG1963|consen 157 LKEHQEPKSIVDNNSGE-----FKGIVHMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGR-IL 230 (792)
T ss_pred hhhhcCCccEEEcCCce-----EEEEEEeeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCc-EE
Confidence 0000 011222222111 1122345567788887754111 11 258888999999999999999999998 89
Q ss_pred EEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEeCCCCC
Q 003907 396 IFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFG 464 (787)
Q Consensus 396 VWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~~~g 464 (787)
||.---. .+. . ..-..|+. |.+.|.+++||+||.+|.+|+..+.+-+|.+.+.+
T Consensus 231 vw~d~~~-----~~~------~--~t~t~lHW--H~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~ 284 (792)
T KOG1963|consen 231 VWRDFGS-----SDD------S--ETCTLLHW--HHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGK 284 (792)
T ss_pred EEecccc-----ccc------c--ccceEEEe--cccccceeEEecCCceEeecccceEEEEEeecCCC
Confidence 9973110 010 0 11122333 34689999999999999999999999999998765
No 202
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.48 E-value=7.2e-06 Score=89.33 Aligned_cols=103 Identities=21% Similarity=0.236 Sum_probs=83.7
Q ss_pred cccCCCceEEEEECCCC-cEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceE
Q 003907 343 ADMDNAGIVVVKDFVTR-AIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVH 421 (787)
Q Consensus 343 ~s~~~dG~V~IwDl~s~-~~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~ 421 (787)
+++..-+.|++||...+ +++.+|.--+.+|+++...|+|+++.+|...|. +..||++. + ..
T Consensus 220 at~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~-l~~FD~r~-------~----------kl 281 (412)
T KOG3881|consen 220 ATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQ-LAKFDLRG-------G----------KL 281 (412)
T ss_pred EEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccch-hheecccC-------c----------ee
Confidence 34456689999999875 588899888999999999999999999998776 89999853 2 23
Q ss_pred EEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEeCCCCC
Q 003907 422 LYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFG 464 (787)
Q Consensus 422 l~~l~rG~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~~~g 464 (787)
+.....|.+ +.|.+|.-.|..++||+++-|..++|||+.+.+
T Consensus 282 ~g~~~kg~t-Gsirsih~hp~~~~las~GLDRyvRIhD~ktrk 323 (412)
T KOG3881|consen 282 LGCGLKGIT-GSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRK 323 (412)
T ss_pred eccccCCcc-CCcceEEEcCCCceEEeeccceeEEEeecccch
Confidence 322234543 469999999999999999999999999998743
No 203
>PRK05137 tolB translocation protein TolB; Provisional
Probab=98.48 E-value=2.3e-05 Score=89.55 Aligned_cols=92 Identities=12% Similarity=0.168 Sum_probs=59.7
Q ss_pred ceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCC--EEEEEeCCCCcccCCCCCCccccCCcceEEEEEe
Q 003907 349 GIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGN--NINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLH 426 (787)
Q Consensus 349 G~V~IwDl~s~~~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~--~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~ 426 (787)
..|.+||+.+++. ..+..|.......+|+|||+.|+.++..+. .|.+||+.. + ....+.
T Consensus 270 ~~Iy~~d~~~~~~-~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g-------~-----------~~~~lt 330 (435)
T PRK05137 270 TDIYTMDLRSGTT-TRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADG-------S-----------NPRRIS 330 (435)
T ss_pred ceEEEEECCCCce-EEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCC-------C-----------CeEEee
Confidence 3577788887664 456666666778999999999998875432 456666532 1 122222
Q ss_pred cccccccEEEEEEccCCCEEEEEeCCC---eEEEEeCC
Q 003907 427 RGITSATIQDICFSHYSQWIAIVSSKG---TCHVFVLS 461 (787)
Q Consensus 427 rG~~~a~I~slaFSpDg~~LAs~S~dg---TVhIwdl~ 461 (787)
.+ ...+...+|||||++|+..+.++ .+.+|++.
T Consensus 331 ~~--~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~ 366 (435)
T PRK05137 331 FG--GGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPD 366 (435)
T ss_pred cC--CCcccCeEECCCCCEEEEEEcCCCceEEEEEECC
Confidence 21 12356688999999999887543 45566653
No 204
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=98.48 E-value=3.6e-05 Score=86.67 Aligned_cols=85 Identities=14% Similarity=0.176 Sum_probs=53.9
Q ss_pred eEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCC--EEEEEeCCCCcccCCCCCCccccCCcceEEEEEec
Q 003907 350 IVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGN--NINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHR 427 (787)
Q Consensus 350 ~V~IwDl~s~~~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~--~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~r 427 (787)
.|.++|+.+++. ..+..+...+...+|+|+|++|+.++.++. .|.+||+.. + ....+..
T Consensus 303 ~iy~~d~~~~~~-~~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~-------~-----------~~~~l~~ 363 (417)
T TIGR02800 303 QIYMMDADGGEV-RRLTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDG-------G-----------GERVLTD 363 (417)
T ss_pred eEEEEECCCCCE-EEeecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCC-------C-----------CeEEccC
Confidence 466677766553 334444556778899999999998887542 466777632 1 1112221
Q ss_pred ccccccEEEEEEccCCCEEEEEeCCCeEE
Q 003907 428 GITSATIQDICFSHYSQWIAIVSSKGTCH 456 (787)
Q Consensus 428 G~~~a~I~slaFSpDg~~LAs~S~dgTVh 456 (787)
+ ......+|+|||++|+.++.++...
T Consensus 364 ~---~~~~~p~~spdg~~l~~~~~~~~~~ 389 (417)
T TIGR02800 364 T---GLDESPSFAPNGRMILYATTRGGRG 389 (417)
T ss_pred C---CCCCCceECCCCCEEEEEEeCCCcE
Confidence 1 1234578999999999888876443
No 205
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=98.47 E-value=4.7e-07 Score=102.04 Aligned_cols=111 Identities=18% Similarity=0.237 Sum_probs=84.4
Q ss_pred ccccCCCceEEEEECCC--------CcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCcc
Q 003907 342 GADMDNAGIVVVKDFVT--------RAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKY 413 (787)
Q Consensus 342 ~~s~~~dG~V~IwDl~s--------~~~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~ 413 (787)
+++++.+|++.+|.+.. -+++.+|++|.+||-|++.+++|..+.||+.||+ |+.|++-+..+ -..++
T Consensus 309 lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~-I~~w~~p~n~d----p~ds~ 383 (577)
T KOG0642|consen 309 LITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGT-IRCWNLPPNQD----PDDSY 383 (577)
T ss_pred EEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCce-eeeeccCCCCC----ccccc
Confidence 45788999999999932 2578899999999999999999999999999886 99999843211 00011
Q ss_pred ccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEeCCC
Q 003907 414 DWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSP 462 (787)
Q Consensus 414 ~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~~ 462 (787)
+. .-+....-|++ ..|+.+++|..-..|+++|.|||+++|....
T Consensus 384 dp----~vl~~~l~Ght-davw~l~~s~~~~~Llscs~DgTvr~w~~~~ 427 (577)
T KOG0642|consen 384 DP----SVLSGTLLGHT-DAVWLLALSSTKDRLLSCSSDGTVRLWEPTE 427 (577)
T ss_pred Cc----chhccceeccc-cceeeeeecccccceeeecCCceEEeeccCC
Confidence 11 11222234654 4599999999999999999999999998753
No 206
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=98.46 E-value=1.5e-06 Score=90.39 Aligned_cols=57 Identities=21% Similarity=0.302 Sum_probs=52.0
Q ss_pred ccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeC
Q 003907 342 GADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRI 399 (787)
Q Consensus 342 ~~s~~~dG~V~IwDl~s~~~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi 399 (787)
.+++.=||.|+||..++.++++.++-|...|++++|+|+-.++|.||.|++ |-+|++
T Consensus 266 lATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmAaaskD~r-ISLWkL 322 (323)
T KOG0322|consen 266 LATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAASKDAR-ISLWKL 322 (323)
T ss_pred EeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchhhhccCCce-EEeeec
Confidence 346677999999999999999999999999999999999999999999665 999986
No 207
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.44 E-value=0.00059 Score=75.94 Aligned_cols=98 Identities=14% Similarity=0.159 Sum_probs=66.5
Q ss_pred CCceEEEEECCCC-----cEEEEecc-------CCCCeEEEEECCCCCEEEEEEc---------CCCEEEEEeCCCCccc
Q 003907 347 NAGIVVVKDFVTR-----AIISQFKA-------HTSPISALCFDPSGTLLVTASV---------YGNNINIFRIMPSCMR 405 (787)
Q Consensus 347 ~dG~V~IwDl~s~-----~~v~~~~a-------H~~pIsaLaFSpdG~lLATaS~---------dG~~IrVWdi~~~~~~ 405 (787)
..|.|.+.|+... +.+..+.. ..+.+.-++++|+|+.|..+.. .++.|.++|..+
T Consensus 213 ~eG~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t---- 288 (352)
T TIGR02658 213 YTGKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKT---- 288 (352)
T ss_pred cCCeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCC----
Confidence 3489999995442 33333321 1223334999999998887542 124688999854
Q ss_pred CCCCCCccccCCcceEEEEEecccccccEEEEEEccCCC-EEEEEe-CCCeEEEEeCCCCC
Q 003907 406 SGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQ-WIAIVS-SKGTCHVFVLSPFG 464 (787)
Q Consensus 406 ~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~-~LAs~S-~dgTVhIwdl~~~g 464 (787)
+ +.+.++.-| ..+..|+||||++ +|.+.. .+++|.|+|+...+
T Consensus 289 ---~----------kvi~~i~vG---~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k 333 (352)
T TIGR02658 289 ---G----------KRLRKIELG---HEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGK 333 (352)
T ss_pred ---C----------eEEEEEeCC---CceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCe
Confidence 2 456666544 3589999999999 888777 58999999987643
No 208
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=98.43 E-value=2.2e-07 Score=104.03 Aligned_cols=103 Identities=17% Similarity=0.209 Sum_probs=72.5
Q ss_pred EEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEc
Q 003907 361 IISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFS 440 (787)
Q Consensus 361 ~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFS 440 (787)
++....--+++|+..+|+|||++||+.|.||. +||||... .+|.-+.+-. -+-..|++||
T Consensus 282 Pv~~w~~~~g~in~f~FS~DG~~LA~VSqDGf-LRvF~fdt------------------~eLlg~mkSY-FGGLLCvcWS 341 (636)
T KOG2394|consen 282 PVARWHIGEGSINEFAFSPDGKYLATVSQDGF-LRIFDFDT------------------QELLGVMKSY-FGGLLCVCWS 341 (636)
T ss_pred ccceeEeccccccceeEcCCCceEEEEecCce-EEEeeccH------------------HHHHHHHHhh-ccceEEEEEc
Confidence 44444444568999999999999999999885 99999743 1221110000 1237899999
Q ss_pred cCCCEEEEEeCCCeEEEEeCCCCCCccccccccCCCCCCcccC
Q 003907 441 HYSQWIAIVSSKGTCHVFVLSPFGGDSGFQTLSSQGGDPYLFP 483 (787)
Q Consensus 441 pDg~~LAs~S~dgTVhIwdl~~~gg~~~~~~H~~~~~~~~~~~ 483 (787)
|||+||++|+.|.-|.||.+....-...-++|.+.|..-.+-|
T Consensus 342 PDGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 342 PDGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFDP 384 (636)
T ss_pred CCccEEEecCCcceEEEEEeccceEEEeccccccceeeEeecc
Confidence 9999999999999999999986543334467776654444433
No 209
>PRK04922 tolB translocation protein TolB; Provisional
Probab=98.43 E-value=2e-05 Score=90.08 Aligned_cols=95 Identities=24% Similarity=0.310 Sum_probs=61.0
Q ss_pred ceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecc
Q 003907 349 GIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRG 428 (787)
Q Consensus 349 G~V~IwDl~s~~~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG 428 (787)
..|.+||+.+++. ..+..|.......+|+|||+.|+..+..+....||.+... .+ ....+ .+. |
T Consensus 272 ~~Iy~~d~~~g~~-~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~-----~g--------~~~~l-t~~-g 335 (433)
T PRK04922 272 PEIYVMDLGSRQL-TRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAAS-----GG--------SAERL-TFQ-G 335 (433)
T ss_pred ceEEEEECCCCCe-EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECC-----CC--------CeEEe-ecC-C
Confidence 3688999988764 4566666666778999999999988764433455543210 01 01122 121 2
Q ss_pred cccccEEEEEEccCCCEEEEEeCCC---eEEEEeCCC
Q 003907 429 ITSATIQDICFSHYSQWIAIVSSKG---TCHVFVLSP 462 (787)
Q Consensus 429 ~~~a~I~slaFSpDg~~LAs~S~dg---TVhIwdl~~ 462 (787)
......+|||||++|+..+.++ .|.+|++..
T Consensus 336 ---~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~ 369 (433)
T PRK04922 336 ---NYNARASVSPDGKKIAMVHGSGGQYRIAVMDLST 369 (433)
T ss_pred ---CCccCEEECCCCCEEEEEECCCCceeEEEEECCC
Confidence 1234689999999999876543 588888754
No 210
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.41 E-value=9.3e-07 Score=96.85 Aligned_cols=122 Identities=16% Similarity=0.278 Sum_probs=85.5
Q ss_pred ccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcc--cCC------------
Q 003907 342 GADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCM--RSG------------ 407 (787)
Q Consensus 342 ~~s~~~dG~V~IwDl~s~~~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~--~~~------------ 407 (787)
++.+..||++|||+..+...+..+.+|...|.+|.|||||++|||-+.+ ..+||++..... ...
T Consensus 159 latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d--~~~VW~~~~g~~~a~~t~~~k~~~~~~cR 236 (398)
T KOG0771|consen 159 LATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD--SARVWSVNTGAALARKTPFSKDEMFSSCR 236 (398)
T ss_pred eeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC--ceEEEEeccCchhhhcCCcccchhhhhce
Confidence 3567899999999999998889999999999999999999999999985 489999875310 000
Q ss_pred ---CCCC-cc-c----cCCcceEEEEE--ecc---------cc-cccEEEEEEccCCCEEEEEeCCCeEEEEeCCCCCC
Q 003907 408 ---SGNH-KY-D----WNSSHVHLYKL--HRG---------IT-SATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGG 465 (787)
Q Consensus 408 ---~g~~-~~-~----~~~s~~~l~~l--~rG---------~~-~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~~~gg 465 (787)
...+ .. . .......++++ ..+ .. ...|.+++.|+||+++|.|+.||.|-|++......
T Consensus 237 F~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~lq~ 315 (398)
T KOG0771|consen 237 FSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSVAIYDAKSLQR 315 (398)
T ss_pred ecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcEEEEEeceeee
Confidence 0000 00 0 00000111111 111 00 12599999999999999999999999999876544
No 211
>PRK03629 tolB translocation protein TolB; Provisional
Probab=98.41 E-value=2.8e-05 Score=88.85 Aligned_cols=94 Identities=18% Similarity=0.176 Sum_probs=60.9
Q ss_pred eEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEeccc
Q 003907 350 IVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGI 429 (787)
Q Consensus 350 ~V~IwDl~s~~~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~ 429 (787)
.|.+||+.+++.. .+..+...+...+|+|||+.|+..+.++...+||.+... .+ ....+...
T Consensus 268 ~I~~~d~~tg~~~-~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~-----~g-----------~~~~lt~~- 329 (429)
T PRK03629 268 NLYVMDLASGQIR-QVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNIN-----GG-----------APQRITWE- 329 (429)
T ss_pred EEEEEECCCCCEE-EccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECC-----CC-----------CeEEeecC-
Confidence 4888999887654 444455677889999999999888876544677754221 01 11222211
Q ss_pred ccccEEEEEEccCCCEEEEEeCC-C--eEEEEeCCC
Q 003907 430 TSATIQDICFSHYSQWIAIVSSK-G--TCHVFVLSP 462 (787)
Q Consensus 430 ~~a~I~slaFSpDg~~LAs~S~d-g--TVhIwdl~~ 462 (787)
.....+.+|||||++|+..+.+ + .+.+||+..
T Consensus 330 -~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~ 364 (429)
T PRK03629 330 -GSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLAT 364 (429)
T ss_pred -CCCccCEEECCCCCEEEEEEccCCCceEEEEECCC
Confidence 1235678999999999887654 3 466677654
No 212
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=98.35 E-value=5.3e-06 Score=93.27 Aligned_cols=70 Identities=17% Similarity=0.304 Sum_probs=58.3
Q ss_pred CCcccCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCC
Q 003907 327 SPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMP 401 (787)
Q Consensus 327 ~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~ 401 (787)
+...|+++++.+ +..++||.++|||+.+.+++..++.--+.+.|++|||||+|+||+++|| .+.||.+..
T Consensus 294 n~f~FS~DG~~L----A~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDD-LVtVwSf~e 363 (636)
T KOG2394|consen 294 NEFAFSPDGKYL----ATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDD-LVTVWSFEE 363 (636)
T ss_pred cceeEcCCCceE----EEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecCCcc-eEEEEEecc
Confidence 334556666654 4568999999999999998888888788999999999999999999966 699999843
No 213
>PRK02889 tolB translocation protein TolB; Provisional
Probab=98.34 E-value=3.9e-05 Score=87.60 Aligned_cols=93 Identities=17% Similarity=0.210 Sum_probs=58.9
Q ss_pred EEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccc
Q 003907 351 VVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGIT 430 (787)
Q Consensus 351 V~IwDl~s~~~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~ 430 (787)
|.++|+.++. +..+..|.......+|+|||+.|+..+..+....||.+... .+ ..+.+ .+. |
T Consensus 266 Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~-----~g--------~~~~l-t~~-g-- 327 (427)
T PRK02889 266 IYTVNADGSG-LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPAS-----GG--------AAQRV-TFT-G-- 327 (427)
T ss_pred EEEEECCCCC-cEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECC-----CC--------ceEEE-ecC-C--
Confidence 4444555443 44555565556678999999999887765545788876321 01 01122 222 2
Q ss_pred cccEEEEEEccCCCEEEEEeCCC---eEEEEeCCC
Q 003907 431 SATIQDICFSHYSQWIAIVSSKG---TCHVFVLSP 462 (787)
Q Consensus 431 ~a~I~slaFSpDg~~LAs~S~dg---TVhIwdl~~ 462 (787)
......+|||||++|+..+.++ .|.+||+..
T Consensus 328 -~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~ 361 (427)
T PRK02889 328 -SYNTSPRISPDGKLLAYISRVGGAFKLYVQDLAT 361 (427)
T ss_pred -CCcCceEECCCCCEEEEEEccCCcEEEEEEECCC
Confidence 1234678999999999887665 588888865
No 214
>PRK04792 tolB translocation protein TolB; Provisional
Probab=98.34 E-value=0.00031 Score=80.88 Aligned_cols=51 Identities=24% Similarity=0.243 Sum_probs=35.0
Q ss_pred CEEEEEECCCCeEEEEEeCCCcEEEEEecC--CeEEEEe--CC--eEEEEECCCCce
Q 003907 173 TAVRFYSFQSHCYEHVLRFRSSVCMVRCSP--RIVAVGL--AT--QIYCFDALTLEN 223 (787)
Q Consensus 173 ~tVrlWdlktg~~v~tL~f~s~V~sV~~s~--~~LaV~~--~~--~I~iwD~~T~e~ 223 (787)
..|.+||+.+++......+.....+.++++ +.|+... ++ +|+++|+.+++.
T Consensus 242 ~~L~~~dl~tg~~~~lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~ 298 (448)
T PRK04792 242 AEIFVQDIYTQVREKVTSFPGINGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKAL 298 (448)
T ss_pred cEEEEEECCCCCeEEecCCCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCCe
Confidence 479999999887644444555556778887 5666543 22 499999988763
No 215
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=98.33 E-value=2.6e-05 Score=84.35 Aligned_cols=98 Identities=20% Similarity=0.317 Sum_probs=69.9
Q ss_pred CceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEec
Q 003907 348 AGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHR 427 (787)
Q Consensus 348 dG~V~IwDl~s~~~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~r 427 (787)
+..|+|||..++..+....-.-+.++-|.|||||.+|..|.-|+ ..+||+.... |. ...+.+-
T Consensus 217 sssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaAt~da-vfrlw~e~q~------------wt---~erw~lg- 279 (445)
T KOG2139|consen 217 SSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAATCDA-VFRLWQENQS------------WT---KERWILG- 279 (445)
T ss_pred cceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEecccc-eeeeehhccc------------ce---ecceecc-
Confidence 56899999999887666545567899999999999999999966 5999976321 00 0112222
Q ss_pred ccccccEEEEEEccCCCEEEEEeCCCeEEEEeCCCCCCc
Q 003907 428 GITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGD 466 (787)
Q Consensus 428 G~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~~~gg~ 466 (787)
...|+.-+|+|+|++|.-+.... -.||.+.-.+..
T Consensus 280 ---sgrvqtacWspcGsfLLf~~sgs-p~lysl~f~~~~ 314 (445)
T KOG2139|consen 280 ---SGRVQTACWSPCGSFLLFACSGS-PRLYSLTFDGED 314 (445)
T ss_pred ---CCceeeeeecCCCCEEEEEEcCC-ceEEEEeecCCC
Confidence 23699999999999987776644 457777644433
No 216
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=98.30 E-value=0.0002 Score=74.29 Aligned_cols=86 Identities=16% Similarity=0.169 Sum_probs=62.3
Q ss_pred CEEEEEECCCCeEEEEEeCCC-cEEEEEe---cCCeEEEEeCCeEEEEECCCCceeEEEEecCCcccCCCCccccccccc
Q 003907 173 TAVRFYSFQSHCYEHVLRFRS-SVCMVRC---SPRIVAVGLATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYG 248 (787)
Q Consensus 173 ~tVrlWdlktg~~v~tL~f~s-~V~sV~~---s~~~LaV~~~~~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~~~~ 248 (787)
+.+.-||+.+|+...+++.++ -|..|.. ++++|.-+-|+.+++||..|.++..+|..+.+|+..+++. .-+.+
T Consensus 136 ~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~---g~wig 212 (325)
T KOG0649|consen 136 GVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDW---GKWIG 212 (325)
T ss_pred eEEEEEEecCCEEEEEEcCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCccc---CceeE
Confidence 589999999999999999775 6777765 4477777778899999999999999999877765443221 11234
Q ss_pred eeEEccceEEEec
Q 003907 249 PMAVGPRWLAYAS 261 (787)
Q Consensus 249 ~lAlspr~LAyas 261 (787)
.+|.+..||..++
T Consensus 213 ala~~edWlvCGg 225 (325)
T KOG0649|consen 213 ALAVNEDWLVCGG 225 (325)
T ss_pred EEeccCceEEecC
Confidence 4444446665554
No 217
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=98.29 E-value=1e-05 Score=91.42 Aligned_cols=56 Identities=21% Similarity=0.408 Sum_probs=52.0
Q ss_pred ccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCC
Q 003907 344 DMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIM 400 (787)
Q Consensus 344 s~~~dG~V~IwDl~s~~~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~ 400 (787)
.+..++.|+++|..++.+++...+|...++++++.|+|-+|++++.|+. +++|.+.
T Consensus 506 ~~hed~~Ir~~dn~~~~~l~s~~a~~~svtslai~~ng~~l~s~s~d~s-v~l~kld 561 (577)
T KOG0642|consen 506 TAHEDRSIRFFDNKTGKILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGS-VRLWKLD 561 (577)
T ss_pred ecccCCceecccccccccchheeeccceecceeecCCCceEEeecCCce-eehhhcc
Confidence 5678999999999999999999999999999999999999999999776 9999873
No 218
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=98.28 E-value=1.6e-05 Score=82.23 Aligned_cols=108 Identities=12% Similarity=0.170 Sum_probs=72.8
Q ss_pred ccCCCceEEEEECCCCcEEEEeccCCCCeEEEEE-CCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEE
Q 003907 344 DMDNAGIVVVKDFVTRAIISQFKAHTSPISALCF-DPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHL 422 (787)
Q Consensus 344 s~~~dG~V~IwDl~s~~~v~~~~aH~~pIsaLaF-SpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l 422 (787)
.+..||.+.-||+++++...++++|++-|.+++- +.+| .+.|+++||+ +||||+++......-+ + ..-
T Consensus 131 ~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~-qilsG~EDGt-vRvWd~kt~k~v~~ie-------~--yk~ 199 (325)
T KOG0649|consen 131 FAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANG-QILSGAEDGT-VRVWDTKTQKHVSMIE-------P--YKN 199 (325)
T ss_pred EecCCeEEEEEEecCCEEEEEEcCCcceeeeeeecccCc-ceeecCCCcc-EEEEeccccceeEEec-------c--ccC
Confidence 3457899999999999999999999999999998 5555 4669999887 9999997631100000 0 000
Q ss_pred EEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEeCCCCCC
Q 003907 423 YKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGG 465 (787)
Q Consensus 423 ~~l~rG~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~~~gg 465 (787)
..+.|-+....|-+++-+ ..||++|+.. .+-||.+.....
T Consensus 200 ~~~lRp~~g~wigala~~--edWlvCGgGp-~lslwhLrsse~ 239 (325)
T KOG0649|consen 200 PNLLRPDWGKWIGALAVN--EDWLVCGGGP-KLSLWHLRSSES 239 (325)
T ss_pred hhhcCcccCceeEEEecc--CceEEecCCC-ceeEEeccCCCc
Confidence 112232222346666554 5599888765 478999976543
No 219
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.26 E-value=1.7e-06 Score=64.32 Aligned_cols=38 Identities=26% Similarity=0.655 Sum_probs=35.1
Q ss_pred cEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEe
Q 003907 360 AIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFR 398 (787)
Q Consensus 360 ~~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWd 398 (787)
+++.+|++|.++|.+|+|+|++++|||++.|+ .|+|||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~-~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDG-TIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETTSSEEEEEETTS-EEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEecccccceeeCCCC-EEEEEC
Confidence 57889999999999999999999999999966 599997
No 220
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=98.22 E-value=0.00016 Score=81.36 Aligned_cols=93 Identities=17% Similarity=0.200 Sum_probs=60.6
Q ss_pred ceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCE--EEEEeCCCCcccCCCCCCccccCCcceEEEEEe
Q 003907 349 GIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNN--INIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLH 426 (787)
Q Consensus 349 G~V~IwDl~s~~~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~--IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~ 426 (787)
..|.+||+.++.. ..+..|.......+|+|||+.|+..+.++.. |.++|+.. + ....+.
T Consensus 258 ~~i~~~d~~~~~~-~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~-------~-----------~~~~l~ 318 (417)
T TIGR02800 258 PDIYVMDLDGKQL-TRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADG-------G-----------EVRRLT 318 (417)
T ss_pred ccEEEEECCCCCE-EECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCC-------C-----------CEEEee
Confidence 3577888877653 4455555555677999999999887765433 44455421 1 122222
Q ss_pred cccccccEEEEEEccCCCEEEEEeCCC---eEEEEeCCC
Q 003907 427 RGITSATIQDICFSHYSQWIAIVSSKG---TCHVFVLSP 462 (787)
Q Consensus 427 rG~~~a~I~slaFSpDg~~LAs~S~dg---TVhIwdl~~ 462 (787)
.+ ...+...+|||||++|+.++.++ .|.+||+..
T Consensus 319 ~~--~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~ 355 (417)
T TIGR02800 319 FR--GGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDG 355 (417)
T ss_pred cC--CCCccCeEECCCCCEEEEEEccCCceEEEEEeCCC
Confidence 11 12356789999999999998876 677777764
No 221
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.21 E-value=0.0029 Score=69.04 Aligned_cols=85 Identities=19% Similarity=0.238 Sum_probs=59.8
Q ss_pred CCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccc-cEEEEEEccCCCEEE
Q 003907 369 TSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSA-TIQDICFSHYSQWIA 447 (787)
Q Consensus 369 ~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a-~I~slaFSpDg~~LA 447 (787)
+....+|..+|||++|..+...-..|-+|.+.+. + .++.-+.+-.+.+ .-.+..|+++|++|+
T Consensus 243 ~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~------~----------g~L~~~~~~~teg~~PR~F~i~~~g~~Li 306 (346)
T COG2706 243 TNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPD------G----------GKLELVGITPTEGQFPRDFNINPSGRFLI 306 (346)
T ss_pred CCceeEEEECCCCCEEEEecCCCCeEEEEEEcCC------C----------CEEEEEEEeccCCcCCccceeCCCCCEEE
Confidence 3467889999999999987764456889998653 1 1222221111222 257899999999999
Q ss_pred EEeCC-CeEEEEeCCCCCCcccc
Q 003907 448 IVSSK-GTCHVFVLSPFGGDSGF 469 (787)
Q Consensus 448 s~S~d-gTVhIwdl~~~gg~~~~ 469 (787)
++..+ .+++||.+++..|....
T Consensus 307 aa~q~sd~i~vf~~d~~TG~L~~ 329 (346)
T COG2706 307 AANQKSDNITVFERDKETGRLTL 329 (346)
T ss_pred EEccCCCcEEEEEEcCCCceEEe
Confidence 99865 57999999987776543
No 222
>PRK01029 tolB translocation protein TolB; Provisional
Probab=98.21 E-value=0.00053 Score=78.52 Aligned_cols=80 Identities=14% Similarity=0.197 Sum_probs=51.0
Q ss_pred EEEeccCCCCeEEEEECCCCCEEEEEEcCC--CEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEE
Q 003907 362 ISQFKAHTSPISALCFDPSGTLLVTASVYG--NNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICF 439 (787)
Q Consensus 362 v~~~~aH~~pIsaLaFSpdG~lLATaS~dG--~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaF 439 (787)
...+..+...+...+|||||++||..+.++ ..|.+||+.. | ....+..+ ...+.+.+|
T Consensus 319 ~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~-------g-----------~~~~Lt~~--~~~~~~p~w 378 (428)
T PRK01029 319 PRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLAT-------G-----------RDYQLTTS--PENKESPSW 378 (428)
T ss_pred eEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCC-------C-----------CeEEccCC--CCCccceEE
Confidence 344444555677889999999998876543 3588888743 2 12233222 124677999
Q ss_pred ccCCCEEEEEeC-CC--eEEEEeCC
Q 003907 440 SHYSQWIAIVSS-KG--TCHVFVLS 461 (787)
Q Consensus 440 SpDg~~LAs~S~-dg--TVhIwdl~ 461 (787)
+|||++|+..+. ++ .+.++++.
T Consensus 379 SpDG~~L~f~~~~~g~~~L~~vdl~ 403 (428)
T PRK01029 379 AIDSLHLVYSAGNSNESELYLISLI 403 (428)
T ss_pred CCCCCEEEEEECCCCCceEEEEECC
Confidence 999999886543 33 45555654
No 223
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=98.18 E-value=2.3e-05 Score=89.77 Aligned_cols=144 Identities=15% Similarity=0.155 Sum_probs=106.6
Q ss_pred cEEEEEecC--CeEEEEeCCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCcce
Q 003907 194 SVCMVRCSP--RIVAVGLATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGR 271 (787)
Q Consensus 194 ~V~sV~~s~--~~LaV~~~~~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~~~~~lAlspr~LAyas~~~~l~~~g~ 271 (787)
.|++|++.| ..|+++.++++++||..+|.+++++.+|... + ..+||+-+.
T Consensus 14 ci~d~afkPDGsqL~lAAg~rlliyD~ndG~llqtLKgHKDt-------------V-------ycVAys~dG-------- 65 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAGSRLLVYDTSDGTLLQPLKGHKDT-------------V-------YCVAYAKDG-------- 65 (1081)
T ss_pred chheeEECCCCceEEEecCCEEEEEeCCCcccccccccccce-------------E-------EEEEEccCC--------
Confidence 788999988 5788888899999999999999999987652 1 124555321
Q ss_pred eccccCCCCCcCCCcCCCCCceeEeeehhhhhhhhcccceeecccccccCCCCCCCCcccCCccccccccccccCCCceE
Q 003907 272 LSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIV 351 (787)
Q Consensus 272 ~s~q~lt~~~~s~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V 351 (787)
. .+++++.|..|
T Consensus 66 --------------------k------------------------------------------------rFASG~aDK~V 77 (1081)
T KOG1538|consen 66 --------------------K------------------------------------------------RFASGSADKSV 77 (1081)
T ss_pred --------------------c------------------------------------------------eeccCCCceeE
Confidence 0 12245678899
Q ss_pred EEEECCCCcEEEEec-cCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccc
Q 003907 352 VVKDFVTRAIISQFK-AHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGIT 430 (787)
Q Consensus 352 ~IwDl~s~~~v~~~~-aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~ 430 (787)
.||.-.- -..++ .|...|.||.|+|-...|||+|-.+ +-+|.... ..+.+.+ .
T Consensus 78 I~W~~kl---EG~LkYSH~D~IQCMsFNP~~h~LasCsLsd--FglWS~~q------------------K~V~K~k---s 131 (1081)
T KOG1538|consen 78 IIWTSKL---EGILKYSHNDAIQCMSFNPITHQLASCSLSD--FGLWSPEQ------------------KSVSKHK---S 131 (1081)
T ss_pred EEecccc---cceeeeccCCeeeEeecCchHHHhhhcchhh--ccccChhh------------------hhHHhhh---h
Confidence 9997543 23333 6999999999999999999999854 67887532 1111111 2
Q ss_pred cccEEEEEEccCCCEEEEEeCCCeEEEEe
Q 003907 431 SATIQDICFSHYSQWIAIVSSKGTCHVFV 459 (787)
Q Consensus 431 ~a~I~slaFSpDg~~LAs~S~dgTVhIwd 459 (787)
.+.|.+++|..||++|+.|-.+|||.|-+
T Consensus 132 s~R~~~CsWtnDGqylalG~~nGTIsiRN 160 (1081)
T KOG1538|consen 132 SSRIICCSWTNDGQYLALGMFNGTISIRN 160 (1081)
T ss_pred heeEEEeeecCCCcEEEEeccCceEEeec
Confidence 34689999999999999999999999863
No 224
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=98.17 E-value=3.5e-05 Score=90.00 Aligned_cols=101 Identities=17% Similarity=0.076 Sum_probs=70.1
Q ss_pred ccCCCceEEEEECCCC--------cEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCcccc
Q 003907 344 DMDNAGIVVVKDFVTR--------AIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDW 415 (787)
Q Consensus 344 s~~~dG~V~IwDl~s~--------~~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~ 415 (787)
.+...|.|.-=+-... +.+..+..|.++|.++.++|=+..+...+-|. .+|||.....
T Consensus 365 VGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW-~vriWs~~~~------------- 430 (555)
T KOG1587|consen 365 VGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDW-TVRIWSEDVI------------- 430 (555)
T ss_pred EEcCCcEEEEEeccCCcccccccccccccccccCcceEeeecCCCccceeeeeccc-eeEeccccCC-------------
Confidence 4566777765232221 23446678999999999999777665555545 5999987421
Q ss_pred CCcceEEEEEecccccccEEEEEEccCC-CEEEEEeCCCeEEEEeCCCC
Q 003907 416 NSSHVHLYKLHRGITSATIQDICFSHYS-QWIAIVSSKGTCHVFVLSPF 463 (787)
Q Consensus 416 ~~s~~~l~~l~rG~~~a~I~slaFSpDg-~~LAs~S~dgTVhIwdl~~~ 463 (787)
..+++.+.+. .+.|++++|||-- ..+|++..||++.|||+...
T Consensus 431 ---~~Pl~~~~~~--~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~ 474 (555)
T KOG1587|consen 431 ---ASPLLSLDSS--PDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQD 474 (555)
T ss_pred ---CCcchhhhhc--cceeeeeEEcCcCceEEEEEcCCCceehhhhhcc
Confidence 1355555442 2349999999975 67888889999999999754
No 225
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=98.14 E-value=0.00047 Score=77.48 Aligned_cols=175 Identities=15% Similarity=0.115 Sum_probs=110.9
Q ss_pred CEEEEEECCCCeEEEEEeCCCcEE-EEEecC--CeEEEEe-CCeEEEEECCCCceeEEEEecCCcccCCCCccccccccc
Q 003907 173 TAVRFYSFQSHCYEHVLRFRSSVC-MVRCSP--RIVAVGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYG 248 (787)
Q Consensus 173 ~tVrlWdlktg~~v~tL~f~s~V~-sV~~s~--~~LaV~~-~~~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~~~~ 248 (787)
+.|.|.|.++++.+.++.....+. .+.+++ +++.|+. ++.|.++|+.+++.+.++.....| .
T Consensus 16 ~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~~~--------------~ 81 (369)
T PF02239_consen 16 GSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGGNP--------------R 81 (369)
T ss_dssp TEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SSEE--------------E
T ss_pred CEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCCCc--------------c
Confidence 589999999999999998766654 466776 6666654 678999999999998888753322 2
Q ss_pred eeEEcc--ceEEEecCCceecCcceeccccCCCCCcCCCcCCCCCceeEeeehhhhhhhhcccceeecccccccCCCCCC
Q 003907 249 PMAVGP--RWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSS 326 (787)
Q Consensus 249 ~lAlsp--r~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~ 326 (787)
.+++++ |||+.+.
T Consensus 82 ~i~~s~DG~~~~v~n----------------------------------------------------------------- 96 (369)
T PF02239_consen 82 GIAVSPDGKYVYVAN----------------------------------------------------------------- 96 (369)
T ss_dssp EEEE--TTTEEEEEE-----------------------------------------------------------------
T ss_pred eEEEcCCCCEEEEEe-----------------------------------------------------------------
Confidence 245544 3433321
Q ss_pred CCcccCCccccccccccccCCCceEEEEECCCCcEEEEeccC-------CCCeEEEEECCCCCEEEEEEcCCCEEEEEeC
Q 003907 327 SPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAH-------TSPISALCFDPSGTLLVTASVYGNNINIFRI 399 (787)
Q Consensus 327 ~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~v~~~~aH-------~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi 399 (787)
..++.+.|+|..+.+++.++... ...+.+|..+|....++.+-.+...|.+-|.
T Consensus 97 -------------------~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy 157 (369)
T PF02239_consen 97 -------------------YEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDY 157 (369)
T ss_dssp -------------------EETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEET
T ss_pred -------------------cCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEe
Confidence 12568889999999999888653 3467899999999977777665555655565
Q ss_pred CCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEE-eCCCeEEEEeCCCC
Q 003907 400 MPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIV-SSKGTCHVFVLSPF 463 (787)
Q Consensus 400 ~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~LAs~-S~dgTVhIwdl~~~ 463 (787)
... .......+..| ....+..|+||++|+.++ ..+..+-++|..+.
T Consensus 158 ~d~---------------~~~~~~~i~~g---~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~ 204 (369)
T PF02239_consen 158 SDP---------------KNLKVTTIKVG---RFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTG 204 (369)
T ss_dssp TTS---------------SCEEEEEEE-----TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTT
T ss_pred ccc---------------cccceeeeccc---ccccccccCcccceeeecccccceeEEEeeccc
Confidence 321 01222333333 236789999999987664 55778999998764
No 226
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=98.12 E-value=0.00011 Score=83.02 Aligned_cols=122 Identities=9% Similarity=0.068 Sum_probs=68.9
Q ss_pred ccCCCceEEEEECCCCcE-------EE---EeccCCCCeEEEEECCCC-CEEEEEEcCCCEEEEEeCCCC-cccCCCCC-
Q 003907 344 DMDNAGIVVVKDFVTRAI-------IS---QFKAHTSPISALCFDPSG-TLLVTASVYGNNINIFRIMPS-CMRSGSGN- 410 (787)
Q Consensus 344 s~~~dG~V~IwDl~s~~~-------v~---~~~aH~~pIsaLaFSpdG-~lLATaS~dG~~IrVWdi~~~-~~~~~~g~- 410 (787)
+++.||+++-+|++.... .. .....--...|++.||.. .+||.|+. +-..|+||.+.. +.....|.
T Consensus 165 sasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~lielk~ltisp~rp~~laVGgs-dpfarLYD~Rr~lks~~s~~~~ 243 (758)
T KOG1310|consen 165 SASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIELKCLTISPSRPYYLAVGGS-DPFARLYDRRRVLKSFRSDGTM 243 (758)
T ss_pred EecCCcceeeecccCCccCCccccccHHHHHhchhhheeeeeeecCCCCceEEecCC-CchhhhhhhhhhccCCCCCccc
Confidence 467899999999976321 11 111112356789999965 46777777 667999994321 00111111
Q ss_pred CccccCCcceEEEE-------Eecccccc---cEEEEEEccCCCEEEEEeCCCeEEEEeCCCCCCcc
Q 003907 411 HKYDWNSSHVHLYK-------LHRGITSA---TIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDS 467 (787)
Q Consensus 411 ~~~~~~~s~~~l~~-------l~rG~~~a---~I~slaFSpDg~~LAs~S~dgTVhIwdl~~~gg~~ 467 (787)
...+ .....++.. ..+|.... .++-++|+|+|.-|.+.=.-.-|.+|+++...++.
T Consensus 244 ~~~p-p~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~~~~ 309 (758)
T KOG1310|consen 244 NTCP-PKDCRCVRYFSPGHLKNSQGNLDRYITCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDKSPT 309 (758)
T ss_pred cCCC-CcccchhheecCccccCcccccccceeeeEEEEECCCCcEEEEeeCCeEEEEEeecCCCCce
Confidence 0000 000011111 12221111 25678899999887777666779999998776664
No 227
>PRK04792 tolB translocation protein TolB; Provisional
Probab=98.11 E-value=0.00026 Score=81.55 Aligned_cols=96 Identities=20% Similarity=0.287 Sum_probs=58.8
Q ss_pred eEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEe-cc
Q 003907 350 IVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLH-RG 428 (787)
Q Consensus 350 ~V~IwDl~s~~~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~-rG 428 (787)
.|.++|+.+++. ..+..|.......+|+|||+.|+..+..+....||.+... .| ....+. .+
T Consensus 287 ~Iy~~dl~tg~~-~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~-----~g-----------~~~~Lt~~g 349 (448)
T PRK04792 287 EIYVVDIATKAL-TRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLA-----SG-----------KVSRLTFEG 349 (448)
T ss_pred EEEEEECCCCCe-EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECC-----CC-----------CEEEEecCC
Confidence 477788877654 4455565566778999999999887764433455543211 02 112221 12
Q ss_pred cccccEEEEEEccCCCEEEEEeC-CCeEEEEeCCCCCC
Q 003907 429 ITSATIQDICFSHYSQWIAIVSS-KGTCHVFVLSPFGG 465 (787)
Q Consensus 429 ~~~a~I~slaFSpDg~~LAs~S~-dgTVhIwdl~~~gg 465 (787)
. .....+|||||++|+..+. ++..+||-++..++
T Consensus 350 ~---~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g 384 (448)
T PRK04792 350 E---QNLGGSITPDGRSMIMVNRTNGKFNIARQDLETG 384 (448)
T ss_pred C---CCcCeeECCCCCEEEEEEecCCceEEEEEECCCC
Confidence 1 2345799999999988766 45567766554444
No 228
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=98.08 E-value=0.00014 Score=83.09 Aligned_cols=239 Identities=17% Similarity=0.171 Sum_probs=138.8
Q ss_pred eCC-CcEEEEEecC--CeEEEEeC-CeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEcc----ceEEEec
Q 003907 190 RFR-SSVCMVRCSP--RIVAVGLA-TQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP----RWLAYAS 261 (787)
Q Consensus 190 ~f~-s~V~sV~~s~--~~LaV~~~-~~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~~~~~lAlsp----r~LAyas 261 (787)
+++ +.|.+|...+ ..||.|.+ +.++||.+.|+.+++++..... ...+|++| ..||.+-
T Consensus 397 rGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~d~~--------------I~~vaw~P~~~~~vLAvA~ 462 (733)
T KOG0650|consen 397 RGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQFDSE--------------IRSVAWNPLSDLCVLAVAV 462 (733)
T ss_pred eccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEeecce--------------eEEEEecCCCCceeEEEEe
Confidence 444 4677666655 78998775 5799999999999998874322 24566766 4455543
Q ss_pred C-CceecCc--cee-----ccccCCCCCcCCCcCCCCCceeEeeehhhhhhhhcccceeecccccccCCCCCCCCcccCC
Q 003907 262 N-TLLLSNS--GRL-----SPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNS 333 (787)
Q Consensus 262 ~-~~~l~~~--g~~-----s~q~lt~~~~s~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~~s~s~ 333 (787)
. ..++.+. |.. .-+.+.. ......|.. .++.-.++...++-.|+.-+ +........+
T Consensus 463 ~~~~~ivnp~~G~~~e~~~t~ell~~--~~~~~~p~~--~~~~W~~~~~~e~~~~v~~~-------I~~~k~i~~v---- 527 (733)
T KOG0650|consen 463 GECVLIVNPIFGDRLEVGPTKELLAS--APNESEPDA--AVVTWSRASLDELEKGVCIV-------IKHPKSIRQV---- 527 (733)
T ss_pred cCceEEeCccccchhhhcchhhhhhc--CCCccCCcc--cceeechhhhhhhccceEEE-------EecCCcccee----
Confidence 2 2222221 211 0011110 000011111 23333344444444442201 1111111111
Q ss_pred ccccccccccc---cCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCC
Q 003907 334 VWKVGRHAGAD---MDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGN 410 (787)
Q Consensus 334 ~~~~~~~~~~s---~~~dG~V~IwDl~s~~~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~ 410 (787)
.|..-+-.+++ .+....|.|.++...+...-|+-..+-|.++.|+|.--+|+.|+. - .|||||+...
T Consensus 528 tWHrkGDYlatV~~~~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq-~-~vRiYdL~kq-------- 597 (733)
T KOG0650|consen 528 TWHRKGDYLATVMPDSGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQ-R-SVRIYDLSKQ-------- 597 (733)
T ss_pred eeecCCceEEEeccCCCcceEEEEecccccccCchhhcCCceeEEEecCCCceEEEEec-c-ceEEEehhHH--------
Confidence 12111111221 123356889999888777777666788999999999999999887 3 4999998431
Q ss_pred CccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEeCCCCCCc-cccccccCCCCC
Q 003907 411 HKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGD-SGFQTLSSQGGD 478 (787)
Q Consensus 411 ~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~~~gg~-~~~~~H~~~~~~ 478 (787)
..+.+|..|. ..|..|+.+|.|.-|..++.|+.+..||+.-...+ ..++.|...+..
T Consensus 598 ---------elvKkL~tg~--kwiS~msihp~GDnli~gs~d~k~~WfDldlsskPyk~lr~H~~avr~ 655 (733)
T KOG0650|consen 598 ---------ELVKKLLTGS--KWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRS 655 (733)
T ss_pred ---------HHHHHHhcCC--eeeeeeeecCCCCeEEEecCCCeeEEEEcccCcchhHHhhhhhhhhhh
Confidence 2334444332 26999999999999999999999999999865444 356666544333
No 229
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=98.06 E-value=0.00019 Score=82.46 Aligned_cols=259 Identities=15% Similarity=0.135 Sum_probs=152.0
Q ss_pred CCeEEEEEecCcEEEEEccCCCceeEeeeeccCcEEEEEEecCCCCCCCCCCccccCcEEEEEEcCCCCCCCCCCCcCCC
Q 003907 74 FKQVLLLGYQNGFQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHL 153 (787)
Q Consensus 74 ~~~vL~lG~~~G~qVWdv~~~~~~~ells~~dg~V~~v~~lP~P~~~~~~d~F~~srpLLavV~~d~~~~~~~~~~~~~~ 153 (787)
++.-|+++..+-+-|||+++ |.+...+..|...|.+|++.-+ ++ +.|. |.
T Consensus 23 DGsqL~lAAg~rlliyD~nd-G~llqtLKgHKDtVycVAys~d-----------Gk--rFAS--G~-------------- 72 (1081)
T KOG1538|consen 23 DGTQLILAAGSRLLVYDTSD-GTLLQPLKGHKDTVYCVAYAKD-----------GK--RFAS--GS-------------- 72 (1081)
T ss_pred CCceEEEecCCEEEEEeCCC-cccccccccccceEEEEEEccC-----------Cc--eecc--CC--------------
Confidence 57778888889999999965 6688999999999999998843 23 4443 21
Q ss_pred CCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCCcEEEEEecC--CeEEEEeCCeEEEEECCCCceeEEEEecC
Q 003907 154 GGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRSSVCMVRCSP--RIVAVGLATQIYCFDALTLENKFSVLTYP 231 (787)
Q Consensus 154 ~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~v~tL~f~s~V~sV~~s~--~~LaV~~~~~I~iwD~~T~e~l~tl~t~p 231 (787)
++..|.+|+-+ .+-+-.+.+...|..+.||| ..|+.+.-...-+|....-. +.-+.
T Consensus 73 -----------------aDK~VI~W~~k-lEG~LkYSH~D~IQCMsFNP~~h~LasCsLsdFglWS~~qK~----V~K~k 130 (1081)
T KOG1538|consen 73 -----------------ADKSVIIWTSK-LEGILKYSHNDAIQCMSFNPITHQLASCSLSDFGLWSPEQKS----VSKHK 130 (1081)
T ss_pred -----------------CceeEEEeccc-ccceeeeccCCeeeEeecCchHHHhhhcchhhccccChhhhh----HHhhh
Confidence 24789999964 34444455667999999999 77887766677788654321 00010
Q ss_pred CcccCCCCccccccccceeEEcc--ceEEEecCCceecCcceeccccCCCCCcCCCcCCCCCceeEeeehhhhhhhhccc
Q 003907 232 VPQLAGQGAVGINVGYGPMAVGP--RWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGL 309 (787)
Q Consensus 232 ~p~~~~~~~~~~~~~~~~lAlsp--r~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~sp~~g~lva~~a~d~sk~la~G~ 309 (787)
. .. -...+++.. .|||.+-.+ |+++...-++. - .+.
T Consensus 131 s---------s~--R~~~CsWtnDGqylalG~~n------GTIsiRNk~gE------------e-------------k~~ 168 (1081)
T KOG1538|consen 131 S---------SS--RIICCSWTNDGQYLALGMFN------GTISIRNKNGE------------E-------------KVK 168 (1081)
T ss_pred h---------he--eEEEeeecCCCcEEEEeccC------ceEEeecCCCC------------c-------------ceE
Confidence 0 00 023355543 566665322 22221111100 0 000
Q ss_pred ceeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECC--------CCcEEEEeccCCCCeEEEEECCCC
Q 003907 310 SKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFV--------TRAIISQFKAHTSPISALCFDPSG 381 (787)
Q Consensus 310 ~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~--------s~~~v~~~~aH~~pIsaLaFSpdG 381 (787)
+ ..|+|.++++ ++..|.+... .+.+.++-|-|.. +|+.+..-+.-.-.-.|+.+-++|
T Consensus 169 ---I------~Rpgg~Nspi-wsi~~~p~sg----~G~~di~aV~DW~qTLSFy~LsG~~Igk~r~L~FdP~CisYf~NG 234 (1081)
T KOG1538|consen 169 ---I------ERPGGSNSPI-WSICWNPSSG----EGRNDILAVADWGQTLSFYQLSGKQIGKDRALNFDPCCISYFTNG 234 (1081)
T ss_pred ---E------eCCCCCCCCc-eEEEecCCCC----CCccceEEEEeccceeEEEEecceeecccccCCCCchhheeccCC
Confidence 0 1244433221 1222221110 1122233343432 123222212222233478888999
Q ss_pred CEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEeCC
Q 003907 382 TLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLS 461 (787)
Q Consensus 382 ~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~ 461 (787)
.++..|+.|+. +++|.-. | ..+-++ |.....|+.++..|+|++++.|..|||+--|++-
T Consensus 235 Ey~LiGGsdk~-L~~fTR~--------G----------vrLGTv--g~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl~ 293 (1081)
T KOG1538|consen 235 EYILLGGSDKQ-LSLFTRD--------G----------VRLGTV--GEQDSWIWTVQAKPNSQYVVVGCQDGTIACYNLI 293 (1081)
T ss_pred cEEEEccCCCc-eEEEeec--------C----------eEEeec--cccceeEEEEEEccCCceEEEEEccCeeehhhhH
Confidence 99999998664 8888631 3 455554 2233479999999999999999999999999874
No 230
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=98.05 E-value=1e-05 Score=91.06 Aligned_cols=83 Identities=18% Similarity=0.301 Sum_probs=69.6
Q ss_pred EEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEc
Q 003907 361 IISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFS 440 (787)
Q Consensus 361 ~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFS 440 (787)
..+.|.+|++=|+||.|+.+|.+||+||+ +.-+.|||.-. ...++.++.|+ .+.|.++.|=
T Consensus 42 lE~eL~GH~GCVN~LeWn~dG~lL~SGSD-D~r~ivWd~~~-----------------~KllhsI~TgH-taNIFsvKFv 102 (758)
T KOG1310|consen 42 LEAELTGHTGCVNCLEWNADGELLASGSD-DTRLIVWDPFE-----------------YKLLHSISTGH-TANIFSVKFV 102 (758)
T ss_pred hhhhhccccceecceeecCCCCEEeecCC-cceEEeecchh-----------------cceeeeeeccc-ccceeEEeee
Confidence 34678999999999999999999999998 55589999732 14666777775 4679999999
Q ss_pred cC--CCEEEEEeCCCeEEEEeCCC
Q 003907 441 HY--SQWIAIVSSKGTCHVFVLSP 462 (787)
Q Consensus 441 pD--g~~LAs~S~dgTVhIwdl~~ 462 (787)
|. .+.+++|..|..|||||++.
T Consensus 103 P~tnnriv~sgAgDk~i~lfdl~~ 126 (758)
T KOG1310|consen 103 PYTNNRIVLSGAGDKLIKLFDLDS 126 (758)
T ss_pred ccCCCeEEEeccCcceEEEEeccc
Confidence 84 47899999999999999985
No 231
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=98.03 E-value=1.7e-06 Score=100.90 Aligned_cols=96 Identities=23% Similarity=0.374 Sum_probs=82.3
Q ss_pred ccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceE
Q 003907 342 GADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVH 421 (787)
Q Consensus 342 ~~s~~~dG~V~IwDl~s~~~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~ 421 (787)
+.++..|..|+||...+..+++..++|.+.|+.++.+.+..++|++|. +.+||||.+.. | .+
T Consensus 205 Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~-D~vIrvWrl~~-------~----------~p 266 (1113)
T KOG0644|consen 205 IITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASN-DKVIRVWRLPD-------G----------AP 266 (1113)
T ss_pred EeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhccc-CceEEEEecCC-------C----------ch
Confidence 456788999999999999999999999999999999999999999998 77899999854 3 34
Q ss_pred EEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEeCC
Q 003907 422 LYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLS 461 (787)
Q Consensus 422 l~~l~rG~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~ 461 (787)
+..| +|++ +.|++|+|||-- ++++|||+++||..
T Consensus 267 vsvL-rght-gavtaiafsP~~----sss~dgt~~~wd~r 300 (1113)
T KOG0644|consen 267 VSVL-RGHT-GAVTAIAFSPRA----SSSDDGTCRIWDAR 300 (1113)
T ss_pred HHHH-hccc-cceeeeccCccc----cCCCCCceEecccc
Confidence 4444 5755 459999999964 88999999999987
No 232
>PRK00178 tolB translocation protein TolB; Provisional
Probab=98.02 E-value=0.00073 Score=76.93 Aligned_cols=92 Identities=17% Similarity=0.185 Sum_probs=56.8
Q ss_pred eEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCC--EEEEEeCCCCcccCCCCCCccccCCcceEEEEEec
Q 003907 350 IVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGN--NINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHR 427 (787)
Q Consensus 350 ~V~IwDl~s~~~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~--~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~r 427 (787)
.|.+||+.+++. ..+..+........|+|||+.|+..+..+. .|.++|+.. |. ...+ .+ .
T Consensus 268 ~Iy~~d~~~~~~-~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~-------g~--------~~~l-t~-~ 329 (430)
T PRK00178 268 EIYVMDLASRQL-SRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNG-------GR--------AERV-TF-V 329 (430)
T ss_pred eEEEEECCCCCe-EEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCC-------CC--------EEEe-ec-C
Confidence 577888887764 345556556667899999998887775443 344455532 20 1122 11 1
Q ss_pred ccccccEEEEEEccCCCEEEEEeCC-C--eEEEEeCCC
Q 003907 428 GITSATIQDICFSHYSQWIAIVSSK-G--TCHVFVLSP 462 (787)
Q Consensus 428 G~~~a~I~slaFSpDg~~LAs~S~d-g--TVhIwdl~~ 462 (787)
+ ......+|||||++|+..+.+ + .+.+||+..
T Consensus 330 ~---~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~t 364 (430)
T PRK00178 330 G---NYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQR 364 (430)
T ss_pred C---CCccceEECCCCCEEEEEEccCCceEEEEEECCC
Confidence 2 113457899999999988754 3 356666654
No 233
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=98.01 E-value=0.00086 Score=81.99 Aligned_cols=111 Identities=16% Similarity=0.197 Sum_probs=63.2
Q ss_pred CCceEEEEECCCCcEEEEec-cCCCCeEEEEECCC---CCEEEEEEc-CCCEEEEEeCCCCcccCCCCCCccccCCcceE
Q 003907 347 NAGIVVVKDFVTRAIISQFK-AHTSPISALCFDPS---GTLLVTASV-YGNNINIFRIMPSCMRSGSGNHKYDWNSSHVH 421 (787)
Q Consensus 347 ~dG~V~IwDl~s~~~v~~~~-aH~~pIsaLaFSpd---G~lLATaS~-dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~ 421 (787)
..|.+.+||++-+.++.... +|..+|..|+.+|- ....++++. --+-+-+|++.... +. ..-|.+....
T Consensus 1215 s~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~-----~~-~vl~~s~~~p 1288 (1431)
T KOG1240|consen 1215 SRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGL-----RQ-TVLWASDGAP 1288 (1431)
T ss_pred CCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCc-----ce-EEEEcCCCCc
Confidence 34678899999888877664 45588888887763 345666555 33458999986521 10 0000000000
Q ss_pred E--EEEe----cccccccEEEEEEccCCCEEEEEeCCCeEEEEeCCCC
Q 003907 422 L--YKLH----RGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPF 463 (787)
Q Consensus 422 l--~~l~----rG~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~~~ 463 (787)
. +.+- +....-....+++..-+.++.+|+.|..|+.||....
T Consensus 1289 ~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p 1336 (1431)
T KOG1240|consen 1289 ILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRP 1336 (1431)
T ss_pred chhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCc
Confidence 0 0000 0000001223455555678999999999999998654
No 234
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=98.01 E-value=0.0016 Score=71.24 Aligned_cols=241 Identities=15% Similarity=0.131 Sum_probs=123.3
Q ss_pred CEEEEEECCCCeEEEEEeCC---CcEEEEEecC--CeEEEEe-CCeEEEEECCCCceeEEEEecCCcccCCCCccccccc
Q 003907 173 TAVRFYSFQSHCYEHVLRFR---SSVCMVRCSP--RIVAVGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVG 246 (787)
Q Consensus 173 ~tVrlWdlktg~~v~tL~f~---s~V~sV~~s~--~~LaV~~-~~~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~~ 246 (787)
.+|.+-|+.+.+-+-..... +.||.+..+| ++|++.. ++.|-+||++.-+....+....+ .+.+
T Consensus 127 ~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN--------~~~~-- 196 (609)
T KOG4227|consen 127 GTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPAN--------SGKN-- 196 (609)
T ss_pred ceeEeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecC--------CCcc--
Confidence 58999999999888777654 4899999988 6777755 55799999887653222221111 0011
Q ss_pred cceeEEcc---ceEEEecCCceecCcceeccccCCCCCcCCCcCCCCCceeEeeehhhhhhhhcccceeecccccccCCC
Q 003907 247 YGPMAVGP---RWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPD 323 (787)
Q Consensus 247 ~~~lAlsp---r~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~ 323 (787)
+-..-|.| ++||.+.... |.-.|+...+. .+ +-++ |.-+.| |.
T Consensus 197 F~t~~F~P~~P~Li~~~~~~~-----G~~~~D~R~~~-~~----------~~~~----------~~~~~L--------~~ 242 (609)
T KOG4227|consen 197 FYTAEFHPETPALILVNSETG-----GPNVFDRRMQA-RP----------VYQR----------SMFKGL--------PQ 242 (609)
T ss_pred ceeeeecCCCceeEEeccccC-----CCCceeecccc-ch----------HHhh----------hccccC--------cc
Confidence 22344444 7888876531 22223332220 00 0000 000111 10
Q ss_pred CCCCCcccCCccccccccccccCCCceEEEEECCCCcE-EEEeccC------CCCeEEEEECCCCCEEEEEEcCCCEEEE
Q 003907 324 GSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAI-ISQFKAH------TSPISALCFDPSGTLLVTASVYGNNINI 396 (787)
Q Consensus 324 ~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~-v~~~~aH------~~pIsaLaFSpdG~lLATaS~dG~~IrV 396 (787)
....-+ ..-|.+.+.++...-..-.-.+||+.+.++ +.++... ...|.+++|--|-+ +||+|+ .-.|.+
T Consensus 243 ~~~~~M--~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D~N~~GY~N~~T~KS~~F~~D~~-v~tGSD-~~~i~~ 318 (609)
T KOG4227|consen 243 ENTEWM--GSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKSDHNPNGYCNIKTIKSMTFIDDYT-VATGSD-HWGIHI 318 (609)
T ss_pred cchhhh--heeeCCCCCeehhhhccCCCEEeeeecccceeEeccCCCCcceeeeeeeeeeeeccee-eeccCc-ccceEE
Confidence 000000 000111111111111112234677776443 2233211 23577889976544 889988 455999
Q ss_pred EeCCCCcccCC---CCCC--ccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEeCCC
Q 003907 397 FRIMPSCMRSG---SGNH--KYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSP 462 (787)
Q Consensus 397 Wdi~~~~~~~~---~g~~--~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~~ 462 (787)
|.+-......+ -|.. .....--...-....||+ ...+..+.|+|-..+|++++-...++||.-..
T Consensus 319 WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGH-RSv~NQVRF~~H~~~l~SSGVE~~~KlWS~~r 388 (609)
T KOG4227|consen 319 WKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGH-RSVPNQVRFSQHNNLLVSSGVENSFKLWSDHR 388 (609)
T ss_pred EecCCCccccCccccCcchhhCchhheecceeEEEecc-cccccceeecCCcceEeccchhhheecccccc
Confidence 99833211111 0100 000000011122334563 45688899999999999999999999997543
No 235
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=97.99 E-value=2.7e-05 Score=86.42 Aligned_cols=270 Identities=21% Similarity=0.255 Sum_probs=159.7
Q ss_pred CCeEEEEEecCc-EEEEEccCCCceeEeeeeccCcEEEEEEecCCCCCCCCCCccccCcEEEEEEcCCCCCCCCCCCcCC
Q 003907 74 FKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSH 152 (787)
Q Consensus 74 ~~~vL~lG~~~G-~qVWdv~~~~~~~ells~~dg~V~~v~~lP~P~~~~~~d~F~~srpLLavV~~d~~~~~~~~~~~~~ 152 (787)
.++-|++|.+.| +--+|.-. .++..-+.-. ..|+.+++| ++..++|| + |
T Consensus 140 nGrhlllgGrKGHlAa~Dw~t-~~L~~Ei~v~-Etv~Dv~~L-------------Hneq~~AV-A----------Q---- 189 (545)
T KOG1272|consen 140 NGRHLLLGGRKGHLAAFDWVT-KKLHFEINVM-ETVRDVTFL-------------HNEQFFAV-A----------Q---- 189 (545)
T ss_pred CccEEEecCCccceeeeeccc-ceeeeeeehh-hhhhhhhhh-------------cchHHHHh-h----------h----
Confidence 467777777777 88888854 4443333322 357888877 33346776 1 2
Q ss_pred CCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCCcEEEEEecC-CeEEE-Ee-CCeEEEEECCCCceeEEEEe
Q 003907 153 LGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRSSVCMVRCSP-RIVAV-GL-ATQIYCFDALTLENKFSVLT 229 (787)
Q Consensus 153 ~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~v~tL~f~s~V~sV~~s~-~~LaV-~~-~~~I~iwD~~T~e~l~tl~t 229 (787)
.+-+.||| ..|.++|-|+-+..|..+.|-| .+|.| +. .+.++--|+.+|++...+.+
T Consensus 190 -------------------K~y~yvYD-~~GtElHClk~~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t 249 (545)
T KOG1272|consen 190 -------------------KKYVYVYD-NNGTELHCLKRHIRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRT 249 (545)
T ss_pred -------------------hceEEEec-CCCcEEeehhhcCchhhhcccchhheeeecccCCceEEEeechhhhhHHHHc
Confidence 25788999 5799999999999999999988 44444 33 34688889999998777765
Q ss_pred cCCcccCCCCccccccccceeEEcc-c-eEEEecCCceecCcceec-cccCCCCCcCCCcCCCCCceeEeeehhhhhhhh
Q 003907 230 YPVPQLAGQGAVGINVGYGPMAVGP-R-WLAYASNTLLLSNSGRLS-PQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFA 306 (787)
Q Consensus 230 ~p~p~~~~~~~~~~~~~~~~lAlsp-r-~LAyas~~~~l~~~g~~s-~q~lt~~~~s~s~sp~~g~lva~~a~d~sk~la 306 (787)
-..+ ...|.-.| + -+-.+... |+++ |. |... +....
T Consensus 250 ~~G~-------------~~vm~qNP~NaVih~Ghsn------GtVSlWS------------P~sk--------ePLvK-- 288 (545)
T KOG1272|consen 250 GAGR-------------TDVMKQNPYNAVIHLGHSN------GTVSLWS------------PNSK--------EPLVK-- 288 (545)
T ss_pred cCCc-------------cchhhcCCccceEEEcCCC------ceEEecC------------CCCc--------chHHH--
Confidence 3221 12233333 1 12222211 2221 11 1100 00000
Q ss_pred cccceeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEE
Q 003907 307 AGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVT 386 (787)
Q Consensus 307 ~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~v~~~~aH~~pIsaLaFSpdG~lLAT 386 (787)
+ ++..+.++++...+.+++. ++++.|..|+|||++.-..+.++.. ..+...++||..|. | .
T Consensus 289 --i----------LcH~g~V~siAv~~~G~YM----aTtG~Dr~~kIWDlR~~~ql~t~~t-p~~a~~ls~Sqkgl-L-A 349 (545)
T KOG1272|consen 289 --I----------LCHRGPVSSIAVDRGGRYM----ATTGLDRKVKIWDLRNFYQLHTYRT-PHPASNLSLSQKGL-L-A 349 (545)
T ss_pred --H----------HhcCCCcceEEECCCCcEE----eecccccceeEeeeccccccceeec-CCCccccccccccc-e-e
Confidence 0 0112234445555555443 4567789999999998765555544 45788999998773 3 3
Q ss_pred EEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEeCCCCCCc
Q 003907 387 ASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGD 466 (787)
Q Consensus 387 aS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~~~gg~ 466 (787)
+|. |..+.||.-.- ++++ .....|--++ ..+.|.++.|.|--..|.+|-..|--.| |-|..|+
T Consensus 350 ~~~-G~~v~iw~d~~----~~s~--------~~~~pYm~H~--~~~~V~~l~FcP~EDvLGIGH~~G~tsi--lVPGsGe 412 (545)
T KOG1272|consen 350 LSY-GDHVQIWKDAL----KGSG--------HGETPYMNHR--CGGPVEDLRFCPYEDVLGIGHAGGITSI--LVPGSGE 412 (545)
T ss_pred eec-CCeeeeehhhh----cCCC--------CCCcchhhhc--cCcccccceeccHHHeeeccccCCceeE--eccCCCC
Confidence 555 66799996321 1011 0112222111 2347999999999999999988886655 3466666
Q ss_pred cccc
Q 003907 467 SGFQ 470 (787)
Q Consensus 467 ~~~~ 470 (787)
+++.
T Consensus 413 PN~D 416 (545)
T KOG1272|consen 413 PNYD 416 (545)
T ss_pred CCcc
Confidence 6553
No 236
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=97.99 E-value=0.00016 Score=77.57 Aligned_cols=185 Identities=21% Similarity=0.273 Sum_probs=121.3
Q ss_pred CCCeEEEEEecCcEEEEEccCCCceeEeee---e-c---cCcEEEEEEecCCCCCCCCCCccccCcEEEEEEcCCCCCCC
Q 003907 73 VFKQVLLLGYQNGFQVLDVEDASNFNELVS---K-R---DGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLA 145 (787)
Q Consensus 73 ~~~~vL~lG~~~G~qVWdv~~~~~~~ells---~-~---dg~V~~v~~lP~P~~~~~~d~F~~srpLLavV~~d~~~~~~ 145 (787)
.++.-|..||++-|+|||+.-.|...+... + . .|-+.++++.|.- .+ ++|+ +.
T Consensus 168 ~DGeqlfaGykrcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~----------~~--~~a~--gs------ 227 (406)
T KOG2919|consen 168 PDGEQLFAGYKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMD----------SK--TLAV--GS------ 227 (406)
T ss_pred CCCCeEeecccceEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCC----------Cc--ceee--ec------
Confidence 367899999999999999966664434332 2 1 2556777777631 22 6665 21
Q ss_pred CCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCC-CcEEEEEecC--CeEEEEe--CCeEEEEECCC
Q 003907 146 PGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFR-SSVCMVRCSP--RIVAVGL--ATQIYCFDALT 220 (787)
Q Consensus 146 ~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~v~tL~f~-s~V~sV~~s~--~~LaV~~--~~~I~iwD~~T 220 (787)
..+++-||....+..+..|-.+ +-|.-+++.+ +.|.+|. +++|-+||++.
T Consensus 228 -------------------------Y~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~ 282 (406)
T KOG2919|consen 228 -------------------------YGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRY 282 (406)
T ss_pred -------------------------ccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehh
Confidence 1257788888888888877654 6899999977 6777765 46899999875
Q ss_pred Cc-eeEEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCcceeccccCCCCCcCCCcCCCCCceeEeeeh
Q 003907 221 LE-NKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAM 299 (787)
Q Consensus 221 ~e-~l~tl~t~p~p~~~~~~~~~~~~~~~~lAlspr~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~sp~~g~lva~~a~ 299 (787)
-+ .++.|..|-. -.++-++. +
T Consensus 283 ~~~pv~~L~rhv~---------------------------~TNQRI~F-------D------------------------ 304 (406)
T KOG2919|consen 283 SRDPVYALERHVG---------------------------DTNQRILF-------D------------------------ 304 (406)
T ss_pred ccchhhhhhhhcc---------------------------CccceEEE-------e------------------------
Confidence 32 2222221100 00110000 0
Q ss_pred hhhhhhhcccceeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECCC-CcEEEEeccCCCCeEEEEEC
Q 003907 300 EHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVT-RAIISQFKAHTSPISALCFD 378 (787)
Q Consensus 300 d~sk~la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s-~~~v~~~~aH~~pIsaLaFS 378 (787)
+-|.+ .-+++++++|.|++||+.+ +..+..+..|..-++.++++
T Consensus 305 --------------------ld~~~---------------~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvsln 349 (406)
T KOG2919|consen 305 --------------------LDPKG---------------EILASGDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGVSLN 349 (406)
T ss_pred --------------------cCCCC---------------ceeeccCCCccEEEEecCCCCCcccccccccccccceecC
Confidence 00000 0123567899999999998 66788899999999999999
Q ss_pred CCCCEEEEEEcCCCEEEEEeC
Q 003907 379 PSGTLLVTASVYGNNINIFRI 399 (787)
Q Consensus 379 pdG~lLATaS~dG~~IrVWdi 399 (787)
|-=.+|||+| |. |+|..
T Consensus 350 P~mpilatss--Gq--r~f~~ 366 (406)
T KOG2919|consen 350 PIMPILATSS--GQ--RIFKY 366 (406)
T ss_pred cccceeeecc--Cc--eeecC
Confidence 9988899987 43 77765
No 237
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=97.94 E-value=3.3e-05 Score=92.63 Aligned_cols=98 Identities=20% Similarity=0.217 Sum_probs=77.4
Q ss_pred cccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEE
Q 003907 343 ADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHL 422 (787)
Q Consensus 343 ~s~~~dG~V~IwDl~s~~~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l 422 (787)
+.+..-|.|.+|+....+....+.+|.+.|.++.|+-||+++||+|+ ++.+|+|++.+... ..
T Consensus 149 ~~gsv~~~iivW~~~~dn~p~~l~GHeG~iF~i~~s~dg~~i~s~Sd-DRsiRlW~i~s~~~----------------~~ 211 (967)
T KOG0974|consen 149 ASGSVFGEIIVWKPHEDNKPIRLKGHEGSIFSIVTSLDGRYIASVSD-DRSIRLWPIDSREV----------------LG 211 (967)
T ss_pred EeccccccEEEEeccccCCcceecccCCceEEEEEccCCcEEEEEec-Ccceeeeecccccc----------------cC
Confidence 44556789999999854444468999999999999999999999999 66799999965211 00
Q ss_pred EEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEeCC
Q 003907 423 YKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLS 461 (787)
Q Consensus 423 ~~l~rG~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~ 461 (787)
... -| |.+.|+.++|.|. .|++++.|-|+++|+.+
T Consensus 212 ~~~-fg-HsaRvw~~~~~~n--~i~t~gedctcrvW~~~ 246 (967)
T KOG0974|consen 212 CTG-FG-HSARVWACCFLPN--RIITVGEDCTCRVWGVN 246 (967)
T ss_pred ccc-cc-ccceeEEEEeccc--eeEEeccceEEEEEecc
Confidence 111 13 4578999999998 89999999999999654
No 238
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=97.94 E-value=0.014 Score=73.00 Aligned_cols=97 Identities=14% Similarity=0.227 Sum_probs=64.5
Q ss_pred ceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcC--CCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEe
Q 003907 349 GIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVY--GNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLH 426 (787)
Q Consensus 349 G~V~IwDl~s~~~v~~~~aH~~pIsaLaFSpdG~lLATaS~d--G~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~ 426 (787)
..++||+-. |.+..+-..-.+-=.+|+|-|+|.++|+.-.. ...|..|.= ||.. +--+.++
T Consensus 237 R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfEr------NGLr----------hgeF~l~ 299 (928)
T PF04762_consen 237 RVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFER------NGLR----------HGEFTLR 299 (928)
T ss_pred eEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEec------CCcE----------eeeEecC
Confidence 589999965 55444433322333478999999999998762 234555652 2221 2234454
Q ss_pred cccccccEEEEEEccCCCEEEEEeCCCeEEEEeCCCC
Q 003907 427 RGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPF 463 (787)
Q Consensus 427 rG~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~~~ 463 (787)
.......|..|+|++||..||+.-.|. |.+|-...|
T Consensus 300 ~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NY 335 (928)
T PF04762_consen 300 FDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNY 335 (928)
T ss_pred CCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCC
Confidence 322334699999999999999988665 999998876
No 239
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=97.93 E-value=0.00055 Score=77.92 Aligned_cols=128 Identities=23% Similarity=0.272 Sum_probs=92.6
Q ss_pred CCEEEEEECCCCeEEEEEeCCCcEEEEEecC--CeEEEEeC---CeEEEEECCCCceeEEEEecCCcccCCCCccccccc
Q 003907 172 PTAVRFYSFQSHCYEHVLRFRSSVCMVRCSP--RIVAVGLA---TQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVG 246 (787)
Q Consensus 172 p~tVrlWdlktg~~v~tL~f~s~V~sV~~s~--~~LaV~~~---~~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~~ 246 (787)
-+++.+++.+..+++..|.-.++|+++.||+ +-++|+.. .++.|||+. ++.++.+-.-|
T Consensus 250 Eq~Lyll~t~g~s~~V~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v~df~egp--------------- 313 (566)
T KOG2315|consen 250 EQTLYLLATQGESVSVPLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR-GKPVFDFPEGP--------------- 313 (566)
T ss_pred cceEEEEEecCceEEEecCCCCCceEEEECCCCCEEEEEEecccceEEEEcCC-CCEeEeCCCCC---------------
Confidence 4789999999778888888889999999998 55776553 469999965 33444433211
Q ss_pred cceeEEcc--ceEEEecCCceecCcceeccccCCCCCcCCCcCCCCCceeEeeehhhhhhhhcccceeecccccccCCCC
Q 003907 247 YGPMAVGP--RWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDG 324 (787)
Q Consensus 247 ~~~lAlsp--r~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~ 324 (787)
.+.+-++| ++|+.+|-
T Consensus 314 RN~~~fnp~g~ii~lAGF-------------------------------------------------------------- 331 (566)
T KOG2315|consen 314 RNTAFFNPHGNIILLAGF-------------------------------------------------------------- 331 (566)
T ss_pred ccceEECCCCCEEEEeec--------------------------------------------------------------
Confidence 23444555 45544441
Q ss_pred CCCCcccCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcC-----CCEEEEEeC
Q 003907 325 SSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVY-----GNNINIFRI 399 (787)
Q Consensus 325 s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~v~~~~aH~~pIsaLaFSpdG~lLATaS~d-----G~~IrVWdi 399 (787)
+.-.|.+-|||+.+.+.+..+.+-.. +-..|+|||.+++||..- ++.|+||+.
T Consensus 332 --------------------GNL~G~mEvwDv~n~K~i~~~~a~~t--t~~eW~PdGe~flTATTaPRlrvdNg~Kiwhy 389 (566)
T KOG2315|consen 332 --------------------GNLPGDMEVWDVPNRKLIAKFKAANT--TVFEWSPDGEYFLTATTAPRLRVDNGIKIWHY 389 (566)
T ss_pred --------------------CCCCCceEEEeccchhhccccccCCc--eEEEEcCCCcEEEEEeccccEEecCCeEEEEe
Confidence 12357899999999999999987654 446899999999999763 445899997
No 240
>PRK04043 tolB translocation protein TolB; Provisional
Probab=97.88 E-value=0.014 Score=66.75 Aligned_cols=49 Identities=16% Similarity=0.219 Sum_probs=36.9
Q ss_pred EEEEEECCCCeEEEEEeCCCcEEEEEecC--CeEEEEeC----CeEEEEECCCCc
Q 003907 174 AVRFYSFQSHCYEHVLRFRSSVCMVRCSP--RIVAVGLA----TQIYCFDALTLE 222 (787)
Q Consensus 174 tVrlWdlktg~~v~tL~f~s~V~sV~~s~--~~LaV~~~----~~I~iwD~~T~e 222 (787)
.|.++|+.+|+...-..+.+.+...++++ +.|+.... .+|+++|+.+++
T Consensus 214 ~Iyv~dl~tg~~~~lt~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~ 268 (419)
T PRK04043 214 TLYKYNLYTGKKEKIASSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKT 268 (419)
T ss_pred EEEEEECCCCcEEEEecCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCc
Confidence 79999999998766666777777777887 56665443 369999988776
No 241
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=97.84 E-value=0.00019 Score=80.56 Aligned_cols=100 Identities=20% Similarity=0.319 Sum_probs=73.8
Q ss_pred CCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEE
Q 003907 346 DNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKL 425 (787)
Q Consensus 346 ~~dG~V~IwDl~s~~~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l 425 (787)
..+|.|.|.|..+.+.+..|..+..+-..++|+|||+++..++.|| .|.++|+.. + +.+.++
T Consensus 13 ~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg-~vsviD~~~-------~----------~~v~~i 74 (369)
T PF02239_consen 13 RGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDG-TVSVIDLAT-------G----------KVVATI 74 (369)
T ss_dssp GGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTS-EEEEEETTS-------S----------SEEEEE
T ss_pred cCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCC-eEEEEECCc-------c----------cEEEEE
Confidence 4578999999999999999987655545688999999999999876 599999964 2 466777
Q ss_pred ecccccccEEEEEEccCCCEEEEEe-CCCeEEEEeCCCCCCc
Q 003907 426 HRGITSATIQDICFSHYSQWIAIVS-SKGTCHVFVLSPFGGD 466 (787)
Q Consensus 426 ~rG~~~a~I~slaFSpDg~~LAs~S-~dgTVhIwdl~~~gg~ 466 (787)
+-|. .-.++++|+||++|+++. ..+++.|+|..+.+-.
T Consensus 75 ~~G~---~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v 113 (369)
T PF02239_consen 75 KVGG---NPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPV 113 (369)
T ss_dssp E-SS---EEEEEEE--TTTEEEEEEEETTEEEEEETTT--EE
T ss_pred ecCC---CcceEEEcCCCCEEEEEecCCCceeEeccccccce
Confidence 7664 357899999999999886 5899999998775433
No 242
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=97.83 E-value=0.055 Score=60.10 Aligned_cols=104 Identities=23% Similarity=0.379 Sum_probs=64.5
Q ss_pred eEEEEECCCCc--E--EEEecc-CCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEE
Q 003907 350 IVVVKDFVTRA--I--ISQFKA-HTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYK 424 (787)
Q Consensus 350 ~V~IwDl~s~~--~--v~~~~a-H~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~ 424 (787)
.|.+|++.... + ...+.. ....-..|+|+|+|+++....+....|.+|++.+. .| ....+..
T Consensus 167 ~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~-----~g--------~~~~~~~ 233 (345)
T PF10282_consen 167 RVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPS-----DG--------SLTEIQT 233 (345)
T ss_dssp EEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETT-----TT--------EEEEEEE
T ss_pred EEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeeccc-----CC--------ceeEEEE
Confidence 56677765543 2 222322 22345789999999999999888888999998521 02 1122222
Q ss_pred Ee---cccccc-cEEEEEEccCCCEEEEEe-CCCeEEEEeCCCCCCc
Q 003907 425 LH---RGITSA-TIQDICFSHYSQWIAIVS-SKGTCHVFVLSPFGGD 466 (787)
Q Consensus 425 l~---rG~~~a-~I~slaFSpDg~~LAs~S-~dgTVhIwdl~~~gg~ 466 (787)
.. .+.... .-..|++||||++|.++. ..++|.+|++++..+.
T Consensus 234 ~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~ 280 (345)
T PF10282_consen 234 ISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGT 280 (345)
T ss_dssp EESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTT
T ss_pred eeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCc
Confidence 21 121111 468899999999988876 4678999999765443
No 243
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=97.83 E-value=0.00038 Score=83.87 Aligned_cols=102 Identities=14% Similarity=0.155 Sum_probs=80.1
Q ss_pred ccCCCceEEEEECCCCcEEE-EeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEE
Q 003907 344 DMDNAGIVVVKDFVTRAIIS-QFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHL 422 (787)
Q Consensus 344 s~~~dG~V~IwDl~s~~~v~-~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l 422 (787)
+.+.|.++++|++.+.+... +.-+|+..|..++|+|+ +++|+++|- +.|+|+.. + ..+
T Consensus 192 s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n--~i~t~gedc-tcrvW~~~--------~----------~~l 250 (967)
T KOG0974|consen 192 SVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN--RIITVGEDC-TCRVWGVN--------G----------TQL 250 (967)
T ss_pred EEecCcceeeeecccccccCcccccccceeEEEEeccc--eeEEeccce-EEEEEecc--------c----------cee
Confidence 44668899999999988665 66689999999999998 999999954 59999763 2 122
Q ss_pred EEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEeCCCCCCcc
Q 003907 423 YKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDS 467 (787)
Q Consensus 423 ~~l~rG~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~~~gg~~ 467 (787)
-++ +++....|+.++..++.-++.++++|+++++|++...+-+.
T Consensus 251 ~~y-~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~r~~e~ 294 (967)
T KOG0974|consen 251 EVY-DEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNGRGLEG 294 (967)
T ss_pred hhh-hhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhcccccc
Confidence 222 23233459999999999999999999999999998655443
No 244
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=97.83 E-value=0.0015 Score=74.60 Aligned_cols=220 Identities=14% Similarity=0.156 Sum_probs=131.9
Q ss_pred CEEEEEECCCCeEEEEEeCCCcEEEEEecC---CeEEEEeCCeEEEEECCCCceeEEEEecCCcccCCCCccccccccce
Q 003907 173 TAVRFYSFQSHCYEHVLRFRSSVCMVRCSP---RIVAVGLATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGP 249 (787)
Q Consensus 173 ~tVrlWdlktg~~v~tL~f~s~V~sV~~s~---~~LaV~~~~~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~~~~~ 249 (787)
++|.|-. + +-...+++.+..-.++..+. .++++|....||-+++..|+-+.-+.+... +.+.
T Consensus 116 R~IefHa-k-~G~hy~~RIP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~-------------~lN~ 180 (703)
T KOG2321|consen 116 RTIEFHA-K-YGRHYRTRIPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSG-------------ELNV 180 (703)
T ss_pred ceeeehh-h-cCeeeeeecCcCCccccccCCCccEEEeecCcceEEEEccccccccccccccc-------------ccee
Confidence 5565533 2 22334455555555666544 788888888999999999987776664322 1456
Q ss_pred eEEcc--ceEEEecCCceecCcceeccccCCCCCcCCCcCCCCCceeEeeehhhhhhhhcccceeecccccccCCCCC--
Q 003907 250 MAVGP--RWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGS-- 325 (787)
Q Consensus 250 lAlsp--r~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s-- 325 (787)
+.+.+ -+||+++.+..+ --|+..... .++.. | ++..+ . -.|...
T Consensus 181 v~in~~hgLla~Gt~~g~V-----EfwDpR~ks------------rv~~l--~----~~~~v----~-----s~pg~~~~ 228 (703)
T KOG2321|consen 181 VSINEEHGLLACGTEDGVV-----EFWDPRDKS------------RVGTL--D----AASSV----N-----SHPGGDAA 228 (703)
T ss_pred eeecCccceEEecccCceE-----EEecchhhh------------hheee--e----ccccc----C-----CCcccccc
Confidence 77777 678888754321 124432210 00000 0 00000 0 011111
Q ss_pred --CCCcccCCccccccccccccCCCceEEEEECCCCcEEEEeccC--CCCeEEEEECCC--CCEEEEEEcCCCEEEEEeC
Q 003907 326 --SSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAH--TSPISALCFDPS--GTLLVTASVYGNNINIFRI 399 (787)
Q Consensus 326 --~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~v~~~~aH--~~pIsaLaFSpd--G~lLATaS~dG~~IrVWdi 399 (787)
..++.|+. .+..++.+..+|.|.|||+++.+++. ++.| ..||..+.|.+. +..|+|+ |-+.++|||-
T Consensus 229 ~svTal~F~d----~gL~~aVGts~G~v~iyDLRa~~pl~-~kdh~~e~pi~~l~~~~~~~q~~v~S~--Dk~~~kiWd~ 301 (703)
T KOG2321|consen 229 PSVTALKFRD----DGLHVAVGTSTGSVLIYDLRASKPLL-VKDHGYELPIKKLDWQDTDQQNKVVSM--DKRILKIWDE 301 (703)
T ss_pred CcceEEEecC----CceeEEeeccCCcEEEEEcccCCcee-ecccCCccceeeecccccCCCceEEec--chHHhhhccc
Confidence 12233322 24455667889999999999987653 3445 569999999876 4556555 4567999996
Q ss_pred CCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEeCCCCCCc
Q 003907 400 MPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGD 466 (787)
Q Consensus 400 ~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~~~gg~ 466 (787)
.+ | ....... ....|.++||=|++-++.++-.+..++.|=+...|..
T Consensus 302 ~~-------G----------k~~asiE---pt~~lND~C~~p~sGm~f~Ane~~~m~~yyiP~LGPa 348 (703)
T KOG2321|consen 302 CT-------G----------KPMASIE---PTSDLNDFCFVPGSGMFFTANESSKMHTYYIPSLGPA 348 (703)
T ss_pred cc-------C----------Cceeecc---ccCCcCceeeecCCceEEEecCCCcceeEEccccCCC
Confidence 43 3 1221111 2235899999999999999999999999888765543
No 245
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.82 E-value=0.00097 Score=73.14 Aligned_cols=57 Identities=16% Similarity=0.268 Sum_probs=50.1
Q ss_pred ccCCCceEEEEECCCCcEEEE-eccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCC
Q 003907 344 DMDNAGIVVVKDFVTRAIISQ-FKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMP 401 (787)
Q Consensus 344 s~~~dG~V~IwDl~s~~~v~~-~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~ 401 (787)
.+..-|.+..||++.++.+.. |++-++.|++|--+|++.+||+|+- |+.+||||+.+
T Consensus 264 ~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GL-DRyvRIhD~kt 321 (412)
T KOG3881|consen 264 TGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGL-DRYVRIHDIKT 321 (412)
T ss_pred EecccchhheecccCceeeccccCCccCCcceEEEcCCCceEEeecc-ceeEEEeeccc
Confidence 345667888999999988776 8899999999999999999999999 67799999965
No 246
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=97.81 E-value=0.0001 Score=79.99 Aligned_cols=77 Identities=19% Similarity=0.350 Sum_probs=61.5
Q ss_pred ccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCE
Q 003907 366 KAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQW 445 (787)
Q Consensus 366 ~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~ 445 (787)
++| .+|++|.+++||+.|+|||-++..|+|||... |. ..++.. +|. ..+.-+.|||||.+
T Consensus 193 pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdt-------g~--------~~pL~~--~gl--gg~slLkwSPdgd~ 252 (445)
T KOG2139|consen 193 PGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDT-------GQ--------KIPLIP--KGL--GGFSLLKWSPDGDV 252 (445)
T ss_pred CCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCC-------CC--------cccccc--cCC--CceeeEEEcCCCCE
Confidence 355 69999999999999999999999999999854 21 133332 221 24788999999999
Q ss_pred EEEEeCCCeEEEEeCCC
Q 003907 446 IAIVSSKGTCHVFVLSP 462 (787)
Q Consensus 446 LAs~S~dgTVhIwdl~~ 462 (787)
|.+++-|++.+||..+.
T Consensus 253 lfaAt~davfrlw~e~q 269 (445)
T KOG2139|consen 253 LFAATCDAVFRLWQENQ 269 (445)
T ss_pred EEEecccceeeeehhcc
Confidence 99999999999997653
No 247
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=97.80 E-value=0.002 Score=69.72 Aligned_cols=78 Identities=19% Similarity=0.307 Sum_probs=53.7
Q ss_pred CCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEe---cc-----ccccc---EEEE
Q 003907 369 TSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLH---RG-----ITSAT---IQDI 437 (787)
Q Consensus 369 ~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~---rG-----~~~a~---I~sl 437 (787)
-..|+.+.|+++|+|++|-+- - +++|||+.-. .. ....+..+ |- ..+.. =..+
T Consensus 272 IsSISDvKFs~sGryilsRDy-l-tvk~wD~nme------~~--------pv~t~~vh~~lr~kLc~lYEnD~IfdKFec 335 (433)
T KOG1354|consen 272 ISSISDVKFSHSGRYILSRDY-L-TVKLWDLNME------AK--------PVETYPVHEYLRSKLCSLYENDAIFDKFEC 335 (433)
T ss_pred hhhhhceEEccCCcEEEEecc-c-eeEEEecccc------CC--------cceEEeehHhHHHHHHHHhhccchhheeEE
Confidence 457899999999999998765 3 5999998321 10 01112111 10 00111 2468
Q ss_pred EEccCCCEEEEEeCCCeEEEEeCCC
Q 003907 438 CFSHYSQWIAIVSSKGTCHVFVLSP 462 (787)
Q Consensus 438 aFSpDg~~LAs~S~dgTVhIwdl~~ 462 (787)
+||-|+.++++||.....|+|++..
T Consensus 336 ~~sg~~~~v~TGsy~n~frvf~~~~ 360 (433)
T KOG1354|consen 336 SWSGNDSYVMTGSYNNVFRVFNLAR 360 (433)
T ss_pred EEcCCcceEecccccceEEEecCCC
Confidence 9999999999999999999999664
No 248
>PRK01029 tolB translocation protein TolB; Provisional
Probab=97.79 E-value=0.0018 Score=74.24 Aligned_cols=76 Identities=21% Similarity=0.152 Sum_probs=46.7
Q ss_pred CeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEe
Q 003907 371 PISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVS 450 (787)
Q Consensus 371 pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~LAs~S 450 (787)
.....+|||||+.||..+..+...+||.+... ..+ .....+..+ ...+.+.+|||||++|+..+
T Consensus 282 ~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~----~~g----------~~~~~lt~~--~~~~~~p~wSPDG~~Laf~~ 345 (428)
T PRK01029 282 TQGNPSFSPDGTRLVFVSNKDGRPRIYIMQID----PEG----------QSPRLLTKK--YRNSSCPAWSPDGKKIAFCS 345 (428)
T ss_pred CcCCeEECCCCCEEEEEECCCCCceEEEEECc----ccc----------cceEEeccC--CCCccceeECCCCCEEEEEE
Confidence 34567999999999887754433567754210 001 011222211 12467889999999999876
Q ss_pred CC---CeEEEEeCCC
Q 003907 451 SK---GTCHVFVLSP 462 (787)
Q Consensus 451 ~d---gTVhIwdl~~ 462 (787)
.+ ..|++||+..
T Consensus 346 ~~~g~~~I~v~dl~~ 360 (428)
T PRK01029 346 VIKGVRQICVYDLAT 360 (428)
T ss_pred cCCCCcEEEEEECCC
Confidence 54 3577887754
No 249
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=97.76 E-value=0.00029 Score=79.51 Aligned_cols=85 Identities=15% Similarity=0.280 Sum_probs=61.5
Q ss_pred ceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecc
Q 003907 349 GIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRG 428 (787)
Q Consensus 349 G~V~IwDl~s~~~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG 428 (787)
|.+.|--+.-...+-..++|++-|.++.|++...+++||++|= ..+|||-. | ..++.-.
T Consensus 166 ~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~-kfKvWD~~--------G----------~~Lf~S~-- 224 (737)
T KOG1524|consen 166 GHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDF-RFKIWDAQ--------G----------ANLFTSA-- 224 (737)
T ss_pred CeEEEeecccccceeEEeccCcEEEEeecCccccceeecCCce-eEEeeccc--------C----------cccccCC--
Confidence 3444545544555667789999999999999999999999955 59999962 4 3454422
Q ss_pred cccccEEEEEEccCCCEEEEEeCCCeEE
Q 003907 429 ITSATIQDICFSHYSQWIAIVSSKGTCH 456 (787)
Q Consensus 429 ~~~a~I~slaFSpDg~~LAs~S~dgTVh 456 (787)
.+...|++++|.|| +.++.+|. .|.+
T Consensus 225 ~~ey~ITSva~npd-~~~~v~S~-nt~R 250 (737)
T KOG1524|consen 225 AEEYAITSVAFNPE-KDYLLWSY-NTAR 250 (737)
T ss_pred hhccceeeeeeccc-cceeeeee-eeee
Confidence 23346999999999 66777765 3555
No 250
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=97.67 E-value=0.00016 Score=53.57 Aligned_cols=37 Identities=30% Similarity=0.420 Sum_probs=31.4
Q ss_pred EEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEe
Q 003907 421 HLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFV 459 (787)
Q Consensus 421 ~l~~l~rG~~~a~I~slaFSpDg~~LAs~S~dgTVhIwd 459 (787)
++..++ | +...|++|+|+|++++|++++.|++|+|||
T Consensus 3 ~~~~~~-~-h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 3 CVRTFR-G-HSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEE-S-SSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred EEEEEc-C-CCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 455564 4 345799999999999999999999999997
No 251
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=97.63 E-value=0.00066 Score=72.97 Aligned_cols=93 Identities=17% Similarity=0.248 Sum_probs=61.0
Q ss_pred CCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcC-----------------------------------
Q 003907 346 DNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVY----------------------------------- 390 (787)
Q Consensus 346 ~~dG~V~IwDl~s~~~v~~~~aH~~pIsaLaFSpdG~lLATaS~d----------------------------------- 390 (787)
+.+-.|.||.+.+.+.. .++--...+..++|+|||++.|-++..
T Consensus 111 eF~lriTVWSL~t~~~~-~~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPd 189 (447)
T KOG4497|consen 111 EFDLRITVWSLNTQKGY-LLPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPD 189 (447)
T ss_pred cceeEEEEEEeccceeE-EecccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCC
Confidence 34557888888776543 232223455778888998888887652
Q ss_pred CCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEe
Q 003907 391 GNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFV 459 (787)
Q Consensus 391 G~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~LAs~S~dgTVhIwd 459 (787)
|..+-|||.-- ..+++...||. -|..++|||-+++||+|+.|+.++|.+
T Consensus 190 g~~laVwd~~L-----------------eykv~aYe~~l---G~k~v~wsP~~qflavGsyD~~lrvln 238 (447)
T KOG4497|consen 190 GNWLAVWDNVL-----------------EYKVYAYERGL---GLKFVEWSPCNQFLAVGSYDQMLRVLN 238 (447)
T ss_pred CcEEEEecchh-----------------hheeeeeeecc---ceeEEEeccccceEEeeccchhhhhhc
Confidence 33334444210 02344455553 388899999999999999999998843
No 252
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=97.60 E-value=0.0016 Score=70.59 Aligned_cols=103 Identities=17% Similarity=0.338 Sum_probs=77.5
Q ss_pred cCCCceEEEEE--CCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEE
Q 003907 345 MDNAGIVVVKD--FVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHL 422 (787)
Q Consensus 345 ~~~dG~V~IwD--l~s~~~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l 422 (787)
++..|.|.+-. ...-.++.++.+|.++|.+++|+|...+|.+++. ++.+.+||+- |. ....
T Consensus 171 Gd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~-d~~vi~wdig--------g~--------~g~~ 233 (404)
T KOG1409|consen 171 GDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGAS-DHSVIMWDIG--------GR--------KGTA 233 (404)
T ss_pred cccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccc-cCceEEEecc--------CC--------ccee
Confidence 44555555433 3445688999999999999999999999999998 6679999992 11 0244
Q ss_pred EEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEeCCCCCCc
Q 003907 423 YKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGD 466 (787)
Q Consensus 423 ~~l~rG~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~~~gg~ 466 (787)
+++.+ ++..|+.++.-+--+.|.+++.||-|-+|+++-...+
T Consensus 234 ~el~g--h~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~r~e 275 (404)
T KOG1409|consen 234 YELQG--HNDKVQALSYAQHTRQLISCGEDGGIVVWNMNVKRVE 275 (404)
T ss_pred eeecc--chhhhhhhhhhhhheeeeeccCCCeEEEEeccceeec
Confidence 66654 3456787877777889999999999999999865433
No 253
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=97.58 E-value=0.00058 Score=76.55 Aligned_cols=297 Identities=15% Similarity=0.144 Sum_probs=162.0
Q ss_pred CCCCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCceeEeeeeccCcEEEEEEecCCCCCCCCCCcccc
Q 003907 51 ASEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKL 129 (787)
Q Consensus 51 ~~~~~~~~v~wa~Fd~l~~~~~~~~~vL~lG~~~G-~qVWdv~~~~~~~ells~~dg~V~~v~~lP~P~~~~~~d~F~~s 129 (787)
..++|++-|.-+.|++ .+.+|+.|.++- +-|||.........-.++|...|...+|+| |.+.
T Consensus 137 kL~~H~GcVntV~FN~-------~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP----------~s~d 199 (559)
T KOG1334|consen 137 KLNKHKGCVNTVHFNQ-------RGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIP----------FSGD 199 (559)
T ss_pred cccCCCCccceeeecc-------cCceeeccCccceEEeehhhccCcccccccccccchhhhhccC----------CCCC
Confidence 4678999999999987 367999999874 899999765555666788888899889998 7777
Q ss_pred CcEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECC-CCeEEEE---EeCCCcEEEEEecC---
Q 003907 130 HPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQ-SHCYEHV---LRFRSSVCMVRCSP--- 202 (787)
Q Consensus 130 rpLLavV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlk-tg~~v~t---L~f~s~V~sV~~s~--- 202 (787)
++++ ..+. | +.|++=.+. ++.+..+ -+++++|.-++.-|
T Consensus 200 ~ti~-~~s~-------------------d--------------gqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp 245 (559)
T KOG1334|consen 200 RTIV-TSSR-------------------D--------------GQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSP 245 (559)
T ss_pred cCce-eccc-------------------c--------------CceeeeeeccccceecceecccccCccceeeecCCCC
Confidence 7763 2221 1 123332221 2322222 24567777776644
Q ss_pred CeEE-EEeCCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEcc---ceEEEecCCceec-CcceeccccC
Q 003907 203 RIVA-VGLATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP---RWLAYASNTLLLS-NSGRLSPQNL 277 (787)
Q Consensus 203 ~~La-V~~~~~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~~~~~lAlsp---r~LAyas~~~~l~-~~g~~s~q~l 277 (787)
+-+. .|-+..+.=+|+.+...--.+.+-.+... ..+++..+|+.| ..+|.++.+-..- -.++. .+.-
T Consensus 246 ~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~-------~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~-~~~e 317 (559)
T KOG1334|consen 246 KPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEK-------ERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRR-IDKE 317 (559)
T ss_pred CcccccccccceeeeeeccCCccceeeeeccCCc-------cceeeeeEecCCCCccccccCChhhhhhhhcccc-hhhc
Confidence 4444 45555677788876653333332111100 012355677776 4667766542110 00000 0000
Q ss_pred CCCCcCCCcCCCCCceeEeeehhhhhhhhcccceeecccccccCC-CCC--CCCcccCCccccccccccccCCCceEEEE
Q 003907 278 TPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLP-DGS--SSPVSPNSVWKVGRHAGADMDNAGIVVVK 354 (787)
Q Consensus 278 t~~~~s~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p-~~s--~~~~s~s~~~~~~~~~~~s~~~dG~V~Iw 354 (787)
+.+| . +.+.|..-+- +.. ...+.++ ..+.-+...-.|-.|.++
T Consensus 318 ----------~~n~-----------------~---~~~f~p~hl~~d~~v~ITgl~Ys----h~~sElLaSYnDe~IYLF 363 (559)
T KOG1334|consen 318 ----------ENNG-----------------V---LDKFCPHHLVEDDPVNITGLVYS----HDGSELLASYNDEDIYLF 363 (559)
T ss_pred ----------cccc-----------------h---hhhcCCccccccCcccceeEEec----CCccceeeeecccceEEe
Confidence 0000 0 0111111000 000 0000000 000000111233344444
Q ss_pred ECC--CC----------cEEEE-eccCCC--CeEEEEE-CCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCc
Q 003907 355 DFV--TR----------AIISQ-FKAHTS--PISALCF-DPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSS 418 (787)
Q Consensus 355 Dl~--s~----------~~v~~-~~aH~~--pIsaLaF-SpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s 418 (787)
.-. .+ ..+.. .++|.. .|-.+-| -|...++++||+-|+ |-||+-+. +
T Consensus 364 ~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGh-IFiW~K~t-------~--------- 426 (559)
T KOG1334|consen 364 NKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGH-IFIWDKKT-------G--------- 426 (559)
T ss_pred ccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccce-EEEEecch-------h---------
Confidence 211 11 22233 788854 4666665 788999999999787 99999643 2
Q ss_pred ceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEeC
Q 003907 419 HVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVL 460 (787)
Q Consensus 419 ~~~l~~l~rG~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl 460 (787)
+++ .+..|.. ..|.||-=.|---.||+++-|.-|+||.-
T Consensus 427 -eii-~~MegDr-~VVNCLEpHP~~PvLAsSGid~DVKIWTP 465 (559)
T KOG1334|consen 427 -EII-RFMEGDR-HVVNCLEPHPHLPVLASSGIDHDVKIWTP 465 (559)
T ss_pred -HHH-HHhhccc-ceEeccCCCCCCchhhccCCccceeeecC
Confidence 232 2333433 37899998898889999999999999964
No 254
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.58 E-value=0.0073 Score=69.37 Aligned_cols=97 Identities=21% Similarity=0.368 Sum_probs=77.0
Q ss_pred ccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEE
Q 003907 344 DMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLY 423 (787)
Q Consensus 344 s~~~dG~V~IwDl~s~~~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~ 423 (787)
+.+.|+.+..|+...+..++.+++-+..+.+++.+|||..|++||. .|++||+.+ + +.+.
T Consensus 119 S~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l~~as~---~ik~~~~~~-------k----------evv~ 178 (541)
T KOG4547|consen 119 SVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKILLTASR---QIKVLDIET-------K----------EVVI 178 (541)
T ss_pred ecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEEEeccc---eEEEEEccC-------c----------eEEE
Confidence 4567899999999999999999999999999999999999999986 699999965 2 3344
Q ss_pred EEecccccccEEEEEEccC-----CCEEEEE-eCCCeEEEEeCCC
Q 003907 424 KLHRGITSATIQDICFSHY-----SQWIAIV-SSKGTCHVFVLSP 462 (787)
Q Consensus 424 ~l~rG~~~a~I~slaFSpD-----g~~LAs~-S~dgTVhIwdl~~ 462 (787)
.| .| |...|.+++|-.+ |.++.++ ..+.-+.+|-+..
T Consensus 179 ~f-tg-h~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 179 TF-TG-HGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred Ee-cC-CCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 44 45 4568999999887 6665554 4455577887765
No 255
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=97.55 E-value=0.053 Score=61.17 Aligned_cols=192 Identities=19% Similarity=0.178 Sum_probs=109.7
Q ss_pred cccccceecccCCCCCCCcEEEEEEe-eccCC--------C--------CCCCeEEEEEecCcEEEEEccCCCceeEeee
Q 003907 40 AGASVAASISNASEDLKDQVTWAGFD-RLEYG--------P--------SVFKQVLLLGYQNGFQVLDVEDASNFNELVS 102 (787)
Q Consensus 40 ~~~s~~~~~~~~~~~~~~~v~wa~Fd-~l~~~--------~--------~~~~~vL~lG~~~G~qVWdv~~~~~~~ells 102 (787)
+.-+.||.|+. .+.++|.+.-.-.+ -++-. + -..+..+++-+++..-|.+... +-+ +--
T Consensus 281 IvFq~~GdIyl-ydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VSRGkaFi~~~~~-~~~--iqv 356 (668)
T COG4946 281 IVFQNAGDIYL-YDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVSRGKAFIMRPWD-GYS--IQV 356 (668)
T ss_pred EEEecCCcEEE-eCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEecCcEEEECCCC-Cee--EEc
Confidence 34578999998 77777776644443 11100 0 0235667776676644444321 111 222
Q ss_pred eccCcEEEEEEecCCCCCCCCCCccccCcEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCC
Q 003907 103 KRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQS 182 (787)
Q Consensus 103 ~~dg~V~~v~~lP~P~~~~~~d~F~~srpLLavV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlkt 182 (787)
.+.|.|+..+++-+|. -+++..-| | -.|-|||..+
T Consensus 357 ~~~~~VrY~r~~~~~e-------------~~vigt~d-------------------g-------------D~l~iyd~~~ 391 (668)
T COG4946 357 GKKGGVRYRRIQVDPE-------------GDVIGTND-------------------G-------------DKLGIYDKDG 391 (668)
T ss_pred CCCCceEEEEEccCCc-------------ceEEeccC-------------------C-------------ceEEEEecCC
Confidence 4556699888875542 12221111 1 2789999998
Q ss_pred CeEEEEEeCCCcEEEEEecC--CeEEEEeCC-eEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEcc--ceE
Q 003907 183 HCYEHVLRFRSSVCMVRCSP--RIVAVGLAT-QIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP--RWL 257 (787)
Q Consensus 183 g~~v~tL~f~s~V~sV~~s~--~~LaV~~~~-~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~~~~~lAlsp--r~L 257 (787)
++.-.-.+--+.|.+|..++ +.++++.+. +|.++|+.|+.. +.+.-..- + -..-++++| ||+
T Consensus 392 ~e~kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv-~~idkS~~------~------lItdf~~~~nsr~i 458 (668)
T COG4946 392 GEVKRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNV-RLIDKSEY------G------LITDFDWHPNSRWI 458 (668)
T ss_pred ceEEEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCe-eEeccccc------c------eeEEEEEcCCceeE
Confidence 88655555568999999988 577777764 689999999863 22221110 0 124578888 999
Q ss_pred EEecCCc------eecC-cceeccccCCC--CCcCCCcCCCCCce
Q 003907 258 AYASNTL------LLSN-SGRLSPQNLTP--SGVSPSTSPGGSSL 293 (787)
Q Consensus 258 Ayas~~~------~l~~-~g~~s~q~lt~--~~~s~s~sp~~g~l 293 (787)
||+-... .+.+ .|....+.-++ ...+|+|.|++.-|
T Consensus 459 AYafP~gy~tq~Iklydm~~~Kiy~vTT~ta~DfsPaFD~d~ryL 503 (668)
T COG4946 459 AYAFPEGYYTQSIKLYDMDGGKIYDVTTPTAYDFSPAFDPDGRYL 503 (668)
T ss_pred EEecCcceeeeeEEEEecCCCeEEEecCCcccccCcccCCCCcEE
Confidence 9974322 1111 12112233333 56678887776543
No 256
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=97.50 E-value=0.058 Score=68.64 Aligned_cols=82 Identities=10% Similarity=0.160 Sum_probs=51.5
Q ss_pred EEEEECCCCCEEEEEEcCCCEEEEEeCCCCccc--CCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEe
Q 003907 373 SALCFDPSGTLLVTASVYGNNINIFRIMPSCMR--SGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVS 450 (787)
Q Consensus 373 saLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~--~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~LAs~S 450 (787)
..|+|+++|+++++-+. ++.|++||....... .+.|...+. + ... . .+ .-.....|++++||+.+++-+
T Consensus 807 ~Gvavd~dG~LYVADs~-N~rIrviD~~tg~v~tiaG~G~~G~~-d--G~~---~-~a-~l~~P~GIavd~dG~lyVaDt 877 (1057)
T PLN02919 807 LGVLCAKDGQIYVADSY-NHKIKKLDPATKRVTTLAGTGKAGFK-D--GKA---L-KA-QLSEPAGLALGENGRLFVADT 877 (1057)
T ss_pred ceeeEeCCCcEEEEECC-CCEEEEEECCCCeEEEEeccCCcCCC-C--Ccc---c-cc-ccCCceEEEEeCCCCEEEEEC
Confidence 47899999998777665 566999998531100 000000000 0 000 0 00 001367899999999999999
Q ss_pred CCCeEEEEeCCCC
Q 003907 451 SKGTCHVFVLSPF 463 (787)
Q Consensus 451 ~dgTVhIwdl~~~ 463 (787)
.+++|++||++..
T Consensus 878 ~Nn~Irvid~~~~ 890 (1057)
T PLN02919 878 NNSLIRYLDLNKG 890 (1057)
T ss_pred CCCEEEEEECCCC
Confidence 9999999999764
No 257
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=97.48 E-value=0.002 Score=73.60 Aligned_cols=103 Identities=19% Similarity=0.284 Sum_probs=77.3
Q ss_pred eEEEEEecCcEEEEEccCCCceeEeeeeccCcEEEEEEecCCCCCCCCCCccccCcEEEEEEcCCCCCCCCCCCcCCCCC
Q 003907 76 QVLLLGYQNGFQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGG 155 (787)
Q Consensus 76 ~vL~lG~~~G~qVWdv~~~~~~~ells~~dg~V~~v~~lP~P~~~~~~d~F~~srpLLavV~~d~~~~~~~~~~~~~~~~ 155 (787)
-++++|...-+--+|++ .|.+..-+....+++.+|.|.|- +.|||. |..
T Consensus 147 Dly~~gsg~evYRlNLE-qGrfL~P~~~~~~~lN~v~in~~-------------hgLla~--Gt~--------------- 195 (703)
T KOG2321|consen 147 DLYLVGSGSEVYRLNLE-QGRFLNPFETDSGELNVVSINEE-------------HGLLAC--GTE--------------- 195 (703)
T ss_pred cEEEeecCcceEEEEcc-ccccccccccccccceeeeecCc-------------cceEEe--ccc---------------
Confidence 36777777777777885 47777777777799999998852 336643 211
Q ss_pred cccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCCc------------EEEEEecC--CeEEEEeC-CeEEEEECCC
Q 003907 156 VRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRSS------------VCMVRCSP--RIVAVGLA-TQIYCFDALT 220 (787)
Q Consensus 156 ~r~g~~~~~~~~~~~~p~tVrlWdlktg~~v~tL~f~s~------------V~sV~~s~--~~LaV~~~-~~I~iwD~~T 220 (787)
.++|.+||.++.+.+.+|...+. |.+|.|+. -.++||.. +.|+|||+++
T Consensus 196 ----------------~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa 259 (703)
T KOG2321|consen 196 ----------------DGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRA 259 (703)
T ss_pred ----------------CceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEccc
Confidence 26899999999999999986554 89999977 35777764 5799999998
Q ss_pred CceeE
Q 003907 221 LENKF 225 (787)
Q Consensus 221 ~e~l~ 225 (787)
-+.+.
T Consensus 260 ~~pl~ 264 (703)
T KOG2321|consen 260 SKPLL 264 (703)
T ss_pred CCcee
Confidence 76543
No 258
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=97.45 E-value=0.15 Score=52.44 Aligned_cols=209 Identities=17% Similarity=0.115 Sum_probs=112.7
Q ss_pred CEEEEEECCCCeEEEEEeCC---CcEE-EEEecCCeEEEE-eCCeEEEEECCCCceeEEEEecCCcccCCCCcccccccc
Q 003907 173 TAVRFYSFQSHCYEHVLRFR---SSVC-MVRCSPRIVAVG-LATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGY 247 (787)
Q Consensus 173 ~tVrlWdlktg~~v~tL~f~---s~V~-sV~~s~~~LaV~-~~~~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~~~ 247 (787)
++|..||.++|+.+.+..+. .... ......+.|.++ .++.|++||+.|++.+++... +.+- ..
T Consensus 3 g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~~-----------~~ 70 (238)
T PF13360_consen 3 GTLSALDPRTGKELWSYDLGPGIGGPVATAVPDGGRVYVASGDGNLYALDAKTGKVLWRFDL-PGPI-----------SG 70 (238)
T ss_dssp SEEEEEETTTTEEEEEEECSSSCSSEEETEEEETTEEEEEETTSEEEEEETTTSEEEEEEEC-SSCG-----------GS
T ss_pred CEEEEEECCCCCEEEEEECCCCCCCccceEEEeCCEEEEEcCCCEEEEEECCCCCEEEEeec-cccc-----------cc
Confidence 58999999999999999863 2233 222244445554 677899999999999888875 2210 01
Q ss_pred ceeEEccceE-EEecCCceec--Ccceecccc-CCC-CCcCCCcCCCCCceeEeeehhhhhhhhcccceeecccccccCC
Q 003907 248 GPMAVGPRWL-AYASNTLLLS--NSGRLSPQN-LTP-SGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLP 322 (787)
Q Consensus 248 ~~lAlspr~L-Ayas~~~~l~--~~g~~s~q~-lt~-~~~s~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p 322 (787)
.++..+.+.+ +......... .+|...|+. ... +....
T Consensus 71 ~~~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~-------------------------------------- 112 (238)
T PF13360_consen 71 APVVDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGV-------------------------------------- 112 (238)
T ss_dssp GEEEETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCST--------------------------------------
T ss_pred eeeecccccccccceeeeEecccCCcceeeeecccccccccc--------------------------------------
Confidence 1211121221 2211111111 234444441 211 00000
Q ss_pred CCCCCCcccCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCC----------e-EEEEECCCCCEEEEEEcCC
Q 003907 323 DGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSP----------I-SALCFDPSGTLLVTASVYG 391 (787)
Q Consensus 323 ~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~v~~~~aH~~p----------I-saLaFSpdG~lLATaS~dG 391 (787)
...... ...+..+..+..+|.|..+|+.+++.+.....+..+ + ..+.++ +| .+..++.+|
T Consensus 113 ---~~~~~~----~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~v~~~~~~g 183 (238)
T PF13360_consen 113 ---RSSSSP----AVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVIS-DG-RVYVSSGDG 183 (238)
T ss_dssp ---B--SEE----EEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECC-TT-EEEEECCTS
T ss_pred ---ccccCc----eEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEE-CC-EEEEEcCCC
Confidence 000000 000111223344899999999999998888765433 1 233343 55 444455557
Q ss_pred CEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEeCCCC
Q 003907 392 NNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPF 463 (787)
Q Consensus 392 ~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~~~ 463 (787)
..+.+ |+.. | ..+++.. .. .+.. ....++..|++++.++++..||+.+.
T Consensus 184 ~~~~~-d~~t-------g----------~~~w~~~--~~--~~~~-~~~~~~~~l~~~~~~~~l~~~d~~tG 232 (238)
T PF13360_consen 184 RVVAV-DLAT-------G----------EKLWSKP--IS--GIYS-LPSVDGGTLYVTSSDGRLYALDLKTG 232 (238)
T ss_dssp SEEEE-ETTT-------T----------EEEEEEC--SS---ECE-CEECCCTEEEEEETTTEEEEEETTTT
T ss_pred eEEEE-ECCC-------C----------CEEEEec--CC--CccC-CceeeCCEEEEEeCCCEEEEEECCCC
Confidence 66677 8854 3 3344322 11 1222 25678888888889999999998763
No 259
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=97.44 E-value=0.066 Score=61.54 Aligned_cols=115 Identities=11% Similarity=0.169 Sum_probs=80.4
Q ss_pred ceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEE-cCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEec
Q 003907 349 GIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTAS-VYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHR 427 (787)
Q Consensus 349 G~V~IwDl~s~~~v~~~~aH~~pIsaLaFSpdG~lLATaS-~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~r 427 (787)
.++.+.++....++..+. -.+||.+++|+|+|+-++.+- ---..+-|||++ | ..++.+-.
T Consensus 251 q~Lyll~t~g~s~~V~L~-k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr--------~----------~~v~df~e 311 (566)
T KOG2315|consen 251 QTLYLLATQGESVSVPLL-KEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR--------G----------KPVFDFPE 311 (566)
T ss_pred ceEEEEEecCceEEEecC-CCCCceEEEECCCCCEEEEEEecccceEEEEcCC--------C----------CEeEeCCC
Confidence 467777777444444443 368999999999999887652 112348899984 3 47778766
Q ss_pred ccccccEEEEEEccCCCEEEEEeCC---CeEEEEeCCCCCCccccccccCCCCCCcccCCCCCCccccCCCCCcCCcC
Q 003907 428 GITSATIQDICFSHYSQWIAIVSSK---GTCHVFVLSPFGGDSGFQTLSSQGGDPYLFPVLSLPWWCTSSGISEQQCV 502 (787)
Q Consensus 428 G~~~a~I~slaFSpDg~~LAs~S~d---gTVhIwdl~~~gg~~~~~~H~~~~~~~~~~~~~~~~~~~~~~~s~~q~~~ 502 (787)
|.. .++-|+|.|++|+.++.+ |.+-|||+..++....+.. +|....+|+++.+.+
T Consensus 312 gpR----N~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a----------------~~tt~~eW~PdGe~f 369 (566)
T KOG2315|consen 312 GPR----NTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKA----------------ANTTVFEWSPDGEYF 369 (566)
T ss_pred CCc----cceEECCCCCEEEEeecCCCCCceEEEeccchhhcccccc----------------CCceEEEEcCCCcEE
Confidence 643 458899999999999875 7899999998766554432 223345677777665
No 260
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.43 E-value=0.0059 Score=70.11 Aligned_cols=53 Identities=21% Similarity=0.449 Sum_probs=45.0
Q ss_pred CceEEEEECCCCcEEEEeccCCCCeEEEEECCC-----CCEEEEEEcCCCEEEEEeCC
Q 003907 348 AGIVVVKDFVTRAIISQFKAHTSPISALCFDPS-----GTLLVTASVYGNNINIFRIM 400 (787)
Q Consensus 348 dG~V~IwDl~s~~~v~~~~aH~~pIsaLaFSpd-----G~lLATaS~dG~~IrVWdi~ 400 (787)
.+.|++||+.+++.+.+|.+|.++|++++|--+ |.++.+...-++.|.+|-+.
T Consensus 163 s~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~ 220 (541)
T KOG4547|consen 163 SRQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVE 220 (541)
T ss_pred cceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEE
Confidence 468999999999999999999999999999877 77777665556668888763
No 261
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=97.35 E-value=0.0034 Score=67.59 Aligned_cols=99 Identities=16% Similarity=0.182 Sum_probs=69.1
Q ss_pred CCCceEEEEECCC-C--cEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEE
Q 003907 346 DNAGIVVVKDFVT-R--AIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHL 422 (787)
Q Consensus 346 ~~dG~V~IwDl~s-~--~~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l 422 (787)
.+|....||.... + ++.-.|..|.....++.|+|.++.+|++|. ++.|-||-.+.. .+|=-+ .|+
T Consensus 74 s~drnayVw~~~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSg-ar~isVcy~E~E----------NdWWVs-Khi 141 (361)
T KOG1523|consen 74 SHDRNAYVWTQPSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSG-ARLISVCYYEQE----------NDWWVS-KHI 141 (361)
T ss_pred cCCCCccccccCCCCeeccceeEEEeccceeeEeecCcCceEEeccC-ccEEEEEEEecc----------cceehh-hhh
Confidence 3444445555522 2 233345677889999999999999999998 888999876421 122100 122
Q ss_pred EEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEeC
Q 003907 423 YKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVL 460 (787)
Q Consensus 423 ~~l~rG~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl 460 (787)
.+- ....|.+++|.|++-.||+||.|+.++||..
T Consensus 142 kkP----irStv~sldWhpnnVLlaaGs~D~k~rVfSa 175 (361)
T KOG1523|consen 142 KKP----IRSTVTSLDWHPNNVLLAAGSTDGKCRVFSA 175 (361)
T ss_pred CCc----cccceeeeeccCCcceecccccCcceeEEEE
Confidence 221 2346999999999999999999999999975
No 262
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=97.28 E-value=0.0069 Score=72.54 Aligned_cols=184 Identities=15% Similarity=0.166 Sum_probs=127.4
Q ss_pred CCEEEEEECCCCeEEEEEeCCC-cEEEEEecCCeEEEEe-CCeEEEEECCCCceeEEEEecCCcccCCCCccccccccce
Q 003907 172 PTAVRFYSFQSHCYEHVLRFRS-SVCMVRCSPRIVAVGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGP 249 (787)
Q Consensus 172 p~tVrlWdlktg~~v~tL~f~s-~V~sV~~s~~~LaV~~-~~~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~~~~~ 249 (787)
...+..+|+++.++.+.....+ .|.=++-|.+.|.+|. .++|.+-|..+.+.++++.+|... ...
T Consensus 156 Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~s-------------iSD 222 (1118)
T KOG1275|consen 156 QEKLIHIDLNTEKETRTTNVSASGVTIMRYNNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGS-------------ISD 222 (1118)
T ss_pred hhheeeeecccceeeeeeeccCCceEEEEecCcEEEeecccceEEeecCCcCceeeeeeccccc-------------eee
Confidence 3578889999999998888765 6888888888888875 467999999999999999988762 233
Q ss_pred eEEccceEEEecCCceecCcceeccccCCCCCcCCCcCCCCCceeEeeehhhhhhhhcccceeecccccccCCCCCCCCc
Q 003907 250 MAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPV 329 (787)
Q Consensus 250 lAlspr~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~~ 329 (787)
+.+.-+.|+..|... +. |
T Consensus 223 fDv~GNlLitCG~S~------R~-------------------------------------------~------------- 240 (1118)
T KOG1275|consen 223 FDVQGNLLITCGYSM------RR-------------------------------------------Y------------- 240 (1118)
T ss_pred eeccCCeEEEeeccc------cc-------------------------------------------c-------------
Confidence 455445565555310 00 0
Q ss_pred ccCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCC-CCEEEEEEcCCCEEEEEeCCCCcccCCC
Q 003907 330 SPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPS-GTLLVTASVYGNNINIFRIMPSCMRSGS 408 (787)
Q Consensus 330 s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~v~~~~aH~~pIsaLaFSpd-G~lLATaS~dG~~IrVWdi~~~~~~~~~ 408 (787)
.-.-|--|+|||++..+.+.-+.-|.+| .-+.|.|. -+.||.+|..|. ..+-|....
T Consensus 241 --------------~l~~D~FvkVYDLRmmral~PI~~~~~P-~flrf~Psl~t~~~V~S~sGq-~q~vd~~~l------ 298 (1118)
T KOG1275|consen 241 --------------NLAMDPFVKVYDLRMMRALSPIQFPYGP-QFLRFHPSLTTRLAVTSQSGQ-FQFVDTATL------ 298 (1118)
T ss_pred --------------cccccchhhhhhhhhhhccCCcccccCc-hhhhhcccccceEEEEecccc-eeecccccc------
Confidence 0123667999999998888777777777 66889886 446777777676 666663211
Q ss_pred CCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEeCC
Q 003907 409 GNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLS 461 (787)
Q Consensus 409 g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~ 461 (787)
+. +. ..++-. .....-|..+.+|+.|+.||.+..+|.||+|.=.
T Consensus 299 sN------P~-~~~~~v--~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa~~ 342 (1118)
T KOG1275|consen 299 SN------PP-AGVKMV--NPNGSGISAFDISSNGDALAFGDHEGHVNLWADR 342 (1118)
T ss_pred CC------Cc-cceeEE--ccCCCcceeEEecCCCceEEEecccCcEeeecCC
Confidence 10 00 011111 1112238999999999999999999999999843
No 263
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.23 E-value=0.029 Score=64.30 Aligned_cols=291 Identities=11% Similarity=0.131 Sum_probs=151.1
Q ss_pred CCeEEEEEecCcEEEEEccCCCceeEeeeeccCcEEEEEEecCCCCCCCCCCccccCcEEEEEEcCCCCCCCCCCCcCCC
Q 003907 74 FKQVLLLGYQNGFQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHL 153 (787)
Q Consensus 74 ~~~vL~lG~~~G~qVWdv~~~~~~~ells~~dg~V~~v~~lP~P~~~~~~d~F~~srpLLavV~~d~~~~~~~~~~~~~~ 153 (787)
.|..|++=-+.|+++|--++-+.++.. -.-.|.++.++|+- .+|+.-+.... .
T Consensus 221 ~GTYL~t~Hk~GI~lWGG~~f~r~~RF---~Hp~Vq~idfSP~E-------------kYLVT~s~~p~--~--------- 273 (698)
T KOG2314|consen 221 KGTYLVTFHKQGIALWGGESFDRIQRF---YHPGVQFIDFSPNE-------------KYLVTYSPEPI--I--------- 273 (698)
T ss_pred CceEEEEEeccceeeecCccHHHHHhc---cCCCceeeecCCcc-------------ceEEEecCCcc--c---------
Confidence 578888888899999987664433322 23459999999852 25543222110 0
Q ss_pred CCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeC-CC-----cEEEEEecCCeEEEEeCCeEEEEECCCCceeEEE
Q 003907 154 GGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRF-RS-----SVCMVRCSPRIVAVGLATQIYCFDALTLENKFSV 227 (787)
Q Consensus 154 ~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~v~tL~f-~s-----~V~sV~~s~~~LaV~~~~~I~iwD~~T~e~l~tl 227 (787)
+..+.. -+..++|||+++|...+.+.. .+ ++..=..+.+++|--..+.|.||+...+.++.
T Consensus 274 --~~~~d~---------e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~sisIyEtpsf~lld-- 340 (698)
T KOG2314|consen 274 --VEEDDN---------EGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGNSISIYETPSFMLLD-- 340 (698)
T ss_pred --cCcccC---------CCceEEEEEccccchhcceeccCCCccccceEEeccCCceeEEeccceEEEEecCceeeec--
Confidence 011111 236899999999999888864 22 33333445588887777899999987765321
Q ss_pred EecCCcccCCCCccccccccceeEEcc--ceEEEecCC--ceecCcceeccccCCCCCcCCCcCCCCCceeEeeehhhhh
Q 003907 228 LTYPVPQLAGQGAVGINVGYGPMAVGP--RWLAYASNT--LLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSK 303 (787)
Q Consensus 228 ~t~p~p~~~~~~~~~~~~~~~~lAlsp--r~LAyas~~--~~l~~~g~~s~q~lt~~~~s~s~sp~~g~lva~~a~d~sk 303 (787)
.-+.. .+ |..-+.++| ..|||=... -+.+..+.+ + -|+...+=. -...
T Consensus 341 -~Kslk------i~----gIr~FswsP~~~llAYwtpe~~~~parvtL~----------e---vPs~~~iRt----~nlf 392 (698)
T KOG2314|consen 341 -KKSLK------IS----GIRDFSWSPTSNLLAYWTPETNNIPARVTLM----------E---VPSKREIRT----KNLF 392 (698)
T ss_pred -ccccC------Cc----cccCcccCCCcceEEEEcccccCCcceEEEE----------e---cCccceeee----ccce
Confidence 11111 01 234577888 788883211 000000000 0 011111000 0000
Q ss_pred hhhcccceeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCE
Q 003907 304 QFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTL 383 (787)
Q Consensus 304 ~la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~v~~~~aH~~pIsaLaFSpdG~l 383 (787)
+++.. +| |++ .++-.+.+..+...-.. ..+.-..+.|+.+..+.....--.-..+|-+.+|.|.|..
T Consensus 393 nVsDc---kL--hWQ-----k~gdyLcvkvdR~tK~~---~~g~f~n~eIfrireKdIpve~velke~vi~FaWEP~gdk 459 (698)
T KOG2314|consen 393 NVSDC---KL--HWQ-----KSGDYLCVKVDRHTKSK---VKGQFSNLEIFRIREKDIPVEVVELKESVIAFAWEPHGDK 459 (698)
T ss_pred eeecc---EE--Eec-----cCCcEEEEEEEeecccc---ccceEeeEEEEEeeccCCCceeeecchheeeeeeccCCCe
Confidence 00000 00 000 00111111111100000 0111224667776665433222233568889999999999
Q ss_pred EEEEEcC--CCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEE---eCCCeEEEE
Q 003907 384 LVTASVY--GNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIV---SSKGTCHVF 458 (787)
Q Consensus 384 LATaS~d--G~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~LAs~---S~dgTVhIw 458 (787)
+|+-+.. ..++.+|-+... . ....++.+|..- .-..+.|||.|+|++++ |..|++.++
T Consensus 460 F~vi~g~~~k~tvsfY~~e~~------~-------~~~~lVk~~dk~----~~N~vfwsPkG~fvvva~l~s~~g~l~F~ 522 (698)
T KOG2314|consen 460 FAVISGNTVKNTVSFYAVETN------I-------KKPSLVKELDKK----FANTVFWSPKGRFVVVAALVSRRGDLEFY 522 (698)
T ss_pred EEEEEccccccceeEEEeecC------C-------Cchhhhhhhccc----ccceEEEcCCCcEEEEEEecccccceEEE
Confidence 9987653 235777776431 1 011334444331 24679999999999887 456889999
Q ss_pred eCCC
Q 003907 459 VLSP 462 (787)
Q Consensus 459 dl~~ 462 (787)
|..-
T Consensus 523 D~~~ 526 (698)
T KOG2314|consen 523 DTDY 526 (698)
T ss_pred ecch
Confidence 9873
No 264
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=97.13 E-value=0.0028 Score=68.31 Aligned_cols=89 Identities=17% Similarity=0.285 Sum_probs=69.3
Q ss_pred cCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEE
Q 003907 345 MDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYK 424 (787)
Q Consensus 345 ~~~dG~V~IwDl~s~~~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~ 424 (787)
+..++.|.+|++...+--..|.....++++++|||||+.|.+-|+-+-.|.||.+.+. ..+-
T Consensus 67 ~yk~~~vqvwsl~Qpew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~------------------~~~~ 128 (447)
T KOG4497|consen 67 AYKDPKVQVWSLVQPEWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQ------------------KGYL 128 (447)
T ss_pred eeccceEEEEEeecceeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccc------------------eeEE
Confidence 3568899999999999889999889999999999999877777665667999998542 2222
Q ss_pred EecccccccEEEEEEccCCCEEEEEeCCC
Q 003907 425 LHRGITSATIQDICFSHYSQWIAIVSSKG 453 (787)
Q Consensus 425 l~rG~~~a~I~slaFSpDg~~LAs~S~dg 453 (787)
+.. -...+..++|.|||++.|..+.+.
T Consensus 129 ~~~--pK~~~kg~~f~~dg~f~ai~sRrD 155 (447)
T KOG4497|consen 129 LPH--PKTNVKGYAFHPDGQFCAILSRRD 155 (447)
T ss_pred ecc--cccCceeEEECCCCceeeeeeccc
Confidence 221 112368899999999999998763
No 265
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=97.09 E-value=0.2 Score=55.04 Aligned_cols=104 Identities=20% Similarity=0.350 Sum_probs=70.3
Q ss_pred CCceEEEEECCC-CcE--EEEeccCCCC----------eEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCcc
Q 003907 347 NAGIVVVKDFVT-RAI--ISQFKAHTSP----------ISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKY 413 (787)
Q Consensus 347 ~dG~V~IwDl~s-~~~--v~~~~aH~~p----------IsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~ 413 (787)
..|.|.++-+.. +.+ +..+..|+++ +-+..|+|+|++|++.+-.-..|.+|++.. |.
T Consensus 109 ~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~d-------g~--- 178 (346)
T COG2706 109 HSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDD-------GK--- 178 (346)
T ss_pred cCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEccc-------Cc---
Confidence 347788887754 322 2233456555 888999999999999987434599999863 21
Q ss_pred ccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeC-CCeEEEEeCCCCCCc
Q 003907 414 DWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSS-KGTCHVFVLSPFGGD 466 (787)
Q Consensus 414 ~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~LAs~S~-dgTVhIwdl~~~gg~ 466 (787)
+. ....+.+..|. --..|+|+|++++..+... ++||-+|..++..++
T Consensus 179 -L~--~~~~~~v~~G~---GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~ 226 (346)
T COG2706 179 -LT--PADPAEVKPGA---GPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGK 226 (346)
T ss_pred -cc--cccccccCCCC---CcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCce
Confidence 00 01122333332 2467999999999877764 899999999987554
No 266
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=97.05 E-value=0.0026 Score=78.00 Aligned_cols=96 Identities=14% Similarity=0.314 Sum_probs=71.3
Q ss_pred EECCCCcEEEEeccCCCCeEEEEECCC-CCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccc
Q 003907 354 KDFVTRAIISQFKAHTSPISALCFDPS-GTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSA 432 (787)
Q Consensus 354 wDl~s~~~v~~~~aH~~pIsaLaFSpd-G~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a 432 (787)
|.. .|..++++..|...|..++.++. +.+++|||.||+ ||||++.... +.+ +. ...+..|.. ...
T Consensus 1034 W~p-~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGt-VKvW~~~k~~-~~~-~s------~rS~ltys~----~~s 1099 (1431)
T KOG1240|consen 1034 WNP-RGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGT-VKVWNLRKLE-GEG-GS------ARSELTYSP----EGS 1099 (1431)
T ss_pred CCc-cceEeehhhhccccccceeecCCCCceEEEecCCce-EEEeeehhhh-cCc-ce------eeeeEEEec----cCC
Confidence 543 36789999999999999988765 599999999886 9999985421 110 10 001223332 234
Q ss_pred cEEEEEEccCCCEEEEEeCCCeEEEEeCCCC
Q 003907 433 TIQDICFSHYSQWIAIVSSKGTCHVFVLSPF 463 (787)
Q Consensus 433 ~I~slaFSpDg~~LAs~S~dgTVhIwdl~~~ 463 (787)
.+..+.+.+.|..+|+++.||.|++++++.+
T Consensus 1100 r~~~vt~~~~~~~~Av~t~DG~v~~~~id~~ 1130 (1431)
T KOG1240|consen 1100 RVEKVTMCGNGDQFAVSTKDGSVRVLRIDHY 1130 (1431)
T ss_pred ceEEEEeccCCCeEEEEcCCCeEEEEEcccc
Confidence 6889999999999999999999999999876
No 267
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=97.02 E-value=0.17 Score=57.38 Aligned_cols=98 Identities=21% Similarity=0.274 Sum_probs=72.6
Q ss_pred ccCCCc-eEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEE
Q 003907 344 DMDNAG-IVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHL 422 (787)
Q Consensus 344 s~~~dG-~V~IwDl~s~~~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l 422 (787)
-+..|| .+-|+|..+++ +..+...-+.|-+|+.+|||++++.|-.... |.+.|+.+ |. .++
T Consensus 376 igt~dgD~l~iyd~~~~e-~kr~e~~lg~I~av~vs~dGK~~vvaNdr~e-l~vididn-------gn---------v~~ 437 (668)
T COG4946 376 IGTNDGDKLGIYDKDGGE-VKRIEKDLGNIEAVKVSPDGKKVVVANDRFE-LWVIDIDN-------GN---------VRL 437 (668)
T ss_pred EeccCCceEEEEecCCce-EEEeeCCccceEEEEEcCCCcEEEEEcCceE-EEEEEecC-------CC---------eeE
Confidence 356677 79999998876 4556666789999999999999998876443 66777754 31 222
Q ss_pred EEEecccccccEEEEEEccCCCEEEEEeCCC----eEEEEeCCC
Q 003907 423 YKLHRGITSATIQDICFSHYSQWIAIVSSKG----TCHVFVLSP 462 (787)
Q Consensus 423 ~~l~rG~~~a~I~slaFSpDg~~LAs~S~dg----TVhIwdl~~ 462 (787)
.+-.+ -+-|++++|+|+++|||-+--+| .|||||+..
T Consensus 438 idkS~---~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~ 478 (668)
T COG4946 438 IDKSE---YGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDG 478 (668)
T ss_pred ecccc---cceeEEEEEcCCceeEEEecCcceeeeeEEEEecCC
Confidence 22111 24599999999999999987665 689999875
No 268
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.01 E-value=0.0018 Score=44.63 Aligned_cols=38 Identities=32% Similarity=0.708 Sum_probs=33.2
Q ss_pred cEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEe
Q 003907 360 AIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFR 398 (787)
Q Consensus 360 ~~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWd 398 (787)
+.+..+.+|...|.+++|++++.++++++.|+. +++|+
T Consensus 3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~-~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGT-IKLWD 40 (40)
T ss_pred EEEEEEEecCCceeEEEECCCCCEEEEecCCCe-EEEcC
Confidence 456777889999999999999999999999665 89996
No 269
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=96.99 E-value=0.0045 Score=66.67 Aligned_cols=103 Identities=17% Similarity=0.167 Sum_probs=78.8
Q ss_pred cccCCCceEEEEECCCCc---EEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcc
Q 003907 343 ADMDNAGIVVVKDFVTRA---IISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSH 419 (787)
Q Consensus 343 ~s~~~dG~V~IwDl~s~~---~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~ 419 (787)
+.+.+...|.||...... ..+++..|...|+.|+|+|..+.|+|++.|.+ -.||..... | -|.
T Consensus 26 Av~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drn-ayVw~~~~~------~----~Wk--- 91 (361)
T KOG1523|consen 26 AVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRN-AYVWTQPSG------G----TWK--- 91 (361)
T ss_pred EeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCC-ccccccCCC------C----eec---
Confidence 344566789999876654 77889999999999999999999999999655 799986321 1 132
Q ss_pred eEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEeCCC
Q 003907 420 VHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSP 462 (787)
Q Consensus 420 ~~l~~l~rG~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~~ 462 (787)
+...|.| .+...+++.|||.++.+|++|.-..|-||-++.
T Consensus 92 -ptlvLlR--iNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ 131 (361)
T KOG1523|consen 92 -PTLVLLR--INRAATCVKWSPKENKFAVGSGARLISVCYYEQ 131 (361)
T ss_pred -cceeEEE--eccceeeEeecCcCceEEeccCccEEEEEEEec
Confidence 3333444 233479999999999999999999999987653
No 270
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=96.96 E-value=0.002 Score=70.90 Aligned_cols=98 Identities=12% Similarity=0.097 Sum_probs=70.3
Q ss_pred CceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEec
Q 003907 348 AGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHR 427 (787)
Q Consensus 348 dG~V~IwDl~s~~~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~r 427 (787)
...+.+|....+. ...+-+|-+-+..++|+||++++.||..|++ |||=.. |.+ .-+..+.-
T Consensus 131 ~~~~di~s~~~~~-~~~~lGhvSml~dVavS~D~~~IitaDRDEk-IRvs~y-pa~----------------f~Iesfcl 191 (390)
T KOG3914|consen 131 VYSFDILSADSGR-CEPILGHVSMLLDVAVSPDDQFIITADRDEK-IRVSRY-PAT----------------FVIESFCL 191 (390)
T ss_pred ceeeeeecccccC-cchhhhhhhhhheeeecCCCCEEEEecCCce-EEEEec-Ccc----------------cchhhhcc
Confidence 3455566655433 3456699999999999999999999999776 888665 211 12233344
Q ss_pred ccccccEEEEEEccCCCEEEEEeCCCeEEEEeCCCCCCc
Q 003907 428 GITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGD 466 (787)
Q Consensus 428 G~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~~~gg~ 466 (787)
|++ .-|..|+.-++ +.|+++|.|+|+++||+...+..
T Consensus 192 GH~-eFVS~isl~~~-~~LlS~sGD~tlr~Wd~~sgk~L 228 (390)
T KOG3914|consen 192 GHK-EFVSTISLTDN-YLLLSGSGDKTLRLWDITSGKLL 228 (390)
T ss_pred ccH-hheeeeeeccC-ceeeecCCCCcEEEEecccCCcc
Confidence 543 34777877654 56999999999999999987655
No 271
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=96.95 E-value=0.0027 Score=80.31 Aligned_cols=87 Identities=22% Similarity=0.395 Sum_probs=64.6
Q ss_pred CCceEEEEECCCC---cEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEE
Q 003907 347 NAGIVVVKDFVTR---AIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLY 423 (787)
Q Consensus 347 ~dG~V~IwDl~s~---~~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~ 423 (787)
.++.+.+||..-. ..+. .+|.+.++++++-|.-.+|.||+.+|. |.|||++. ++
T Consensus 2313 d~~n~~lwDtl~~~~~s~v~--~~H~~gaT~l~~~P~~qllisggr~G~-v~l~D~rq------------------rq-- 2369 (2439)
T KOG1064|consen 2313 DNRNVCLWDTLLPPMNSLVH--TCHDGGATVLAYAPKHQLLISGGRKGE-VCLFDIRQ------------------RQ-- 2369 (2439)
T ss_pred CCCcccchhcccCcccceee--eecCCCceEEEEcCcceEEEecCCcCc-EEEeehHH------------------HH--
Confidence 3567888986432 2344 799999999999999999999999887 89999953 11
Q ss_pred EEecccccccEEEEEEccCCCEEEEEeCCCeEEEEeCCCCCC
Q 003907 424 KLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGG 465 (787)
Q Consensus 424 ~l~rG~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~~~gg 465 (787)
++ . + ++. +. .-.++++++.+|+++||+++.++-
T Consensus 2370 -l~-h--~--~~~--~~-~~~~f~~~ss~g~ikIw~~s~~~l 2402 (2439)
T KOG1064|consen 2370 -LR-H--T--FQA--LD-TREYFVTGSSEGNIKIWRLSEFGL 2402 (2439)
T ss_pred -HH-H--H--hhh--hh-hhheeeccCcccceEEEEccccch
Confidence 11 1 0 111 22 446899999999999999998743
No 272
>PRK04043 tolB translocation protein TolB; Provisional
Probab=96.94 E-value=0.11 Score=59.42 Aligned_cols=81 Identities=19% Similarity=0.167 Sum_probs=47.4
Q ss_pred ceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEE--eCCCCcccCCCCCCccccCCcceEEEEEe
Q 003907 349 GIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIF--RIMPSCMRSGSGNHKYDWNSSHVHLYKLH 426 (787)
Q Consensus 349 G~V~IwDl~s~~~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVW--di~~~~~~~~~g~~~~~~~~s~~~l~~l~ 426 (787)
..|.++|+.+++ ...+..+........|+|||+.|+-.|..+..-.|| |+.. |. .+++ . .
T Consensus 257 ~~Iy~~dl~~g~-~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~-------g~--------~~rl-t-~ 318 (419)
T PRK04043 257 PDIYLYDTNTKT-LTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNS-------GS--------VEQV-V-F 318 (419)
T ss_pred cEEEEEECCCCc-EEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCC-------CC--------eEeC-c-c
Confidence 467777877765 334444433233458999999888777644434455 4421 21 1121 1 1
Q ss_pred cccccccEEEEEEccCCCEEEEEeCC
Q 003907 427 RGITSATIQDICFSHYSQWIAIVSSK 452 (787)
Q Consensus 427 rG~~~a~I~slaFSpDg~~LAs~S~d 452 (787)
.|. ...+|||||++|+..+..
T Consensus 319 ~g~-----~~~~~SPDG~~Ia~~~~~ 339 (419)
T PRK04043 319 HGK-----NNSSVSTYKNYIVYSSRE 339 (419)
T ss_pred CCC-----cCceECCCCCEEEEEEcC
Confidence 122 124899999999888765
No 273
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=96.90 E-value=0.0055 Score=65.38 Aligned_cols=106 Identities=15% Similarity=0.147 Sum_probs=74.1
Q ss_pred cccCCCceEEEEECCCCcE--EEEeccCCCCeEEEEECC-CCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcc
Q 003907 343 ADMDNAGIVVVKDFVTRAI--ISQFKAHTSPISALCFDP-SGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSH 419 (787)
Q Consensus 343 ~s~~~dG~V~IwDl~s~~~--v~~~~aH~~pIsaLaFSp-dG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~ 419 (787)
.....+|.+.+-+.....+ ++..++|+-++...+|+. +-+++.||++||. +.-||++-. +
T Consensus 137 ~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~-l~~~D~R~p------~---------- 199 (339)
T KOG0280|consen 137 FVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGS-LSCWDIRIP------K---------- 199 (339)
T ss_pred EEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCce-EEEEEecCC------c----------
Confidence 3445567666555554443 447899999999999986 3468889998775 999999621 1
Q ss_pred eEEEEEecccccccEEEEEEc-cCCCEEEEEeCCCeEEEEeCCCCCCc
Q 003907 420 VHLYKLHRGITSATIQDICFS-HYSQWIAIVSSKGTCHVFVLSPFGGD 466 (787)
Q Consensus 420 ~~l~~l~rG~~~a~I~slaFS-pDg~~LAs~S~dgTVhIwdl~~~gg~ 466 (787)
..++.-.+ .+..-|.+|.=| |+..+|++|+.|.+|++||....+.+
T Consensus 200 ~~i~~n~k-vH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kP 246 (339)
T KOG0280|consen 200 TFIWHNSK-VHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKP 246 (339)
T ss_pred ceeeecce-eeecceEEEecCCCCCceEEEeccccceeeeehhcccCc
Confidence 12222111 123447888777 47899999999999999999876554
No 274
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=96.90 E-value=0.056 Score=58.23 Aligned_cols=80 Identities=14% Similarity=0.167 Sum_probs=54.4
Q ss_pred ccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEe-----c-----ccccccE-
Q 003907 366 KAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLH-----R-----GITSATI- 434 (787)
Q Consensus 366 ~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~-----r-----G~~~a~I- 434 (787)
..-.+.|+.+.|+++|+++++-+- - +++|||+... . .++.+.. + -..+..|
T Consensus 277 ~eivsSISD~kFs~ngryIlsRdy-l-tvkiwDvnm~------k----------~pikTi~~h~~l~~~l~d~YEnDaif 338 (460)
T COG5170 277 EEIVSSISDFKFSDNGRYILSRDY-L-TVKIWDVNMA------K----------NPIKTIPMHCDLMDELNDVYENDAIF 338 (460)
T ss_pred HHHhhhhcceEEcCCCcEEEEecc-c-eEEEEecccc------c----------CCceeechHHHHHHHHHhhhhcccee
Confidence 344578999999999999987765 3 5999998532 1 1222210 0 0001112
Q ss_pred --EEEEEccCCCEEEEEeCCCeEEEEeCCCC
Q 003907 435 --QDICFSHYSQWIAIVSSKGTCHVFVLSPF 463 (787)
Q Consensus 435 --~slaFSpDg~~LAs~S~dgTVhIwdl~~~ 463 (787)
..+.||-|.+.+.+||.....-||.....
T Consensus 339 dkFeisfSgd~~~v~sgsy~NNfgiyp~~ss 369 (460)
T COG5170 339 DKFEISFSGDDKHVLSGSYSNNFGIYPTDSS 369 (460)
T ss_pred eeEEEEecCCcccccccccccceeeeccccC
Confidence 45899999999999999998888885543
No 275
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=96.87 E-value=0.015 Score=64.95 Aligned_cols=96 Identities=9% Similarity=0.024 Sum_probs=73.7
Q ss_pred ceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEc---------CCCEEEEEeCCCCcccCCCCCCccccCCcc
Q 003907 349 GIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASV---------YGNNINIFRIMPSCMRSGSGNHKYDWNSSH 419 (787)
Q Consensus 349 G~V~IwDl~s~~~v~~~~aH~~pIsaLaFSpdG~lLATaS~---------dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~ 419 (787)
+.|.|.|..+++.+.++..-..|-- + +||||+.|..|.. +...|.|||+.+.
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~P~~-~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~----------------- 87 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFLPNP-V-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTH----------------- 87 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCCCce-e-ECCCCCEEEEEeccccccccCCCCCEEEEEECccC-----------------
Confidence 8999999999999999986555543 4 9999999999888 6778999999652
Q ss_pred eEEEEEecccc-----cccEEEEEEccCCCEEEEEe-C-CCeEEEEeCCCC
Q 003907 420 VHLYKLHRGIT-----SATIQDICFSHYSQWIAIVS-S-KGTCHVFVLSPF 463 (787)
Q Consensus 420 ~~l~~l~rG~~-----~a~I~slaFSpDg~~LAs~S-~-dgTVhIwdl~~~ 463 (787)
..+.++.-|.. ...-..+++||||++|.+.. + +..|-|.|+...
T Consensus 88 ~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~ 138 (352)
T TIGR02658 88 LPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGK 138 (352)
T ss_pred cEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCC
Confidence 34445442221 11235799999999999887 4 689999999864
No 276
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=96.85 E-value=0.021 Score=67.56 Aligned_cols=102 Identities=24% Similarity=0.308 Sum_probs=75.8
Q ss_pred cccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcC------CC---EEEEEeCCCCcccCCCCCCcc
Q 003907 343 ADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVY------GN---NINIFRIMPSCMRSGSGNHKY 413 (787)
Q Consensus 343 ~s~~~dG~V~IwDl~s~~~v~~~~aH~~pIsaLaFSpdG~lLATaS~d------G~---~IrVWdi~~~~~~~~~g~~~~ 413 (787)
+-|.+.|+|.|+|+.++.+-+.|..|++.|.+|.|--.- .|+|.+.. |. .+.|=|+.+ |
T Consensus 441 AvGT~sGTV~vvdvst~~v~~~fsvht~~VkgleW~g~s-slvSfsys~~n~~sg~vrN~l~vtdLrt-------G---- 508 (1062)
T KOG1912|consen 441 AVGTNSGTVDVVDVSTNAVAASFSVHTSLVKGLEWLGNS-SLVSFSYSHVNSASGGVRNDLVVTDLRT-------G---- 508 (1062)
T ss_pred EeecCCceEEEEEecchhhhhhhcccccceeeeeeccce-eEEEeeeccccccccceeeeEEEEEccc-------c----
Confidence 457789999999999999999999999999999997554 45555431 11 133445533 2
Q ss_pred ccCCcceEEEEEe--cccccccEEEEEEccCCCEEEEEeCCCeEEEEeCCCC
Q 003907 414 DWNSSHVHLYKLH--RGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPF 463 (787)
Q Consensus 414 ~~~~s~~~l~~l~--rG~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~~~ 463 (787)
.-..+| ++.....|..|.-|.-|+||+..-.|.-+.|||+...
T Consensus 509 -------lsk~fR~l~~~despI~~irvS~~~~yLai~Fr~~plEiwd~kt~ 553 (1062)
T KOG1912|consen 509 -------LSKRFRGLQKPDESPIRAIRVSSSGRYLAILFRREPLEIWDLKTL 553 (1062)
T ss_pred -------cccccccCCCCCcCcceeeeecccCceEEEEecccchHHHhhccc
Confidence 111222 4555567999999999999999999999999999653
No 277
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=96.85 E-value=0.81 Score=51.07 Aligned_cols=57 Identities=16% Similarity=0.023 Sum_probs=41.7
Q ss_pred CEEEEEECCCCeEEEEEeCCCcEEEE-EecCCeEEE-EeCCeEEEEECCCCceeEEEEe
Q 003907 173 TAVRFYSFQSHCYEHVLRFRSSVCMV-RCSPRIVAV-GLATQIYCFDALTLENKFSVLT 229 (787)
Q Consensus 173 ~tVrlWdlktg~~v~tL~f~s~V~sV-~~s~~~LaV-~~~~~I~iwD~~T~e~l~tl~t 229 (787)
+.|.-+|.++|+.+....+...+.+. ....+.+.+ ..++.|++||+.+++.+++...
T Consensus 115 g~l~ald~~tG~~~W~~~~~~~~~~~p~v~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~ 173 (377)
T TIGR03300 115 GEVIALDAEDGKELWRAKLSSEVLSPPLVANGLVVVRTNDGRLTALDAATGERLWTYSR 173 (377)
T ss_pred CEEEEEECCCCcEeeeeccCceeecCCEEECCEEEEECCCCeEEEEEcCCCceeeEEcc
Confidence 58999999999999888877655321 122344444 4567899999999998888764
No 278
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=96.83 E-value=1.2 Score=49.75 Aligned_cols=91 Identities=15% Similarity=0.155 Sum_probs=55.3
Q ss_pred cCCCceEEEEECCCCcEEEEeccC-CCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEE
Q 003907 345 MDNAGIVVVKDFVTRAIISQFKAH-TSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLY 423 (787)
Q Consensus 345 ~~~dG~V~IwDl~s~~~v~~~~aH-~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~ 423 (787)
+..+|.+..+|..+++.+.....- .....+... .|.+|.+++.+|. +.+||..+ | +.++
T Consensus 285 ~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i--~g~~l~~~~~~G~-l~~~d~~t-------G----------~~~~ 344 (377)
T TIGR03300 285 TDADGVVVALDRRSGSELWKNDELKYRQLTAPAV--VGGYLVVGDFEGY-LHWLSRED-------G----------SFVA 344 (377)
T ss_pred ECCCCeEEEEECCCCcEEEccccccCCccccCEE--ECCEEEEEeCCCE-EEEEECCC-------C----------CEEE
Confidence 456899999999999877655321 111222222 3568888888775 88999754 3 4555
Q ss_pred EEecccccccEEEEEEccCCCEEEEEeCCCeEEEE
Q 003907 424 KLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVF 458 (787)
Q Consensus 424 ~l~rG~~~a~I~slaFSpDg~~LAs~S~dgTVhIw 458 (787)
++.-+.. ....+.++. |+ .|..++.||++..|
T Consensus 345 ~~~~~~~-~~~~sp~~~-~~-~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 345 RLKTDGS-GIASPPVVV-GD-GLLVQTRDGDLYAF 376 (377)
T ss_pred EEEcCCC-ccccCCEEE-CC-EEEEEeCCceEEEe
Confidence 5543211 111222233 33 58899999999876
No 279
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=96.83 E-value=0.0081 Score=69.38 Aligned_cols=90 Identities=16% Similarity=0.163 Sum_probs=66.4
Q ss_pred EEEECCCCcE--EEEe-ccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecc
Q 003907 352 VVKDFVTRAI--ISQF-KAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRG 428 (787)
Q Consensus 352 ~IwDl~s~~~--v~~~-~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG 428 (787)
.+|++..++. +... -.+.+.|.+.+++|+.+.|+.|..||. |.+||... + +..+.+.
T Consensus 239 ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgS-iiLyD~~~-------~------------~t~~~ka 298 (545)
T PF11768_consen 239 CIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGS-IILYDTTR-------G------------VTLLAKA 298 (545)
T ss_pred EEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCCe-EEEEEcCC-------C------------eeeeeee
Confidence 3666655432 2221 257789999999999999999999886 89999853 1 1111111
Q ss_pred cccccEEEEEEccCCCEEEEEeCCCeEEEEeCCCC
Q 003907 429 ITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPF 463 (787)
Q Consensus 429 ~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~~~ 463 (787)
.-....++|+|||..+++++..|.+.+||+.-.
T Consensus 299 --~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALs 331 (545)
T PF11768_consen 299 --EFIPTLIAWHPDGAIFVVGSEQGELQCFDMALS 331 (545)
T ss_pred --cccceEEEEcCCCcEEEEEcCCceEEEEEeecC
Confidence 124688999999999999999999999999754
No 280
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=96.83 E-value=0.0086 Score=65.74 Aligned_cols=105 Identities=13% Similarity=0.065 Sum_probs=82.1
Q ss_pred ccccCCCceEEEEECCC------CcEEEEec-cCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccc
Q 003907 342 GADMDNAGIVVVKDFVT------RAIISQFK-AHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYD 414 (787)
Q Consensus 342 ~~s~~~dG~V~IwDl~s------~~~v~~~~-aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~ 414 (787)
++++..|-.++||.+.. .+++.... .|.+.|.||+|+-..++|.++..+|+ |.+.|+.+.
T Consensus 71 L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~-VI~HDiEt~------------ 137 (609)
T KOG4227|consen 71 LASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGT-VIKHDIETK------------ 137 (609)
T ss_pred EeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcce-eEeeecccc------------
Confidence 45677888999999853 34555443 46689999999999999999999887 667888642
Q ss_pred cCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEeCCCCC
Q 003907 415 WNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFG 464 (787)
Q Consensus 415 ~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~~~g 464 (787)
+.++.+......+.|+.+.-+|-.+.|++.+.++-|-+||+....
T Consensus 138 -----qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~ 182 (609)
T KOG4227|consen 138 -----QSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQ 182 (609)
T ss_pred -----eeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCC
Confidence 456666433334479999999999999999999999999997643
No 281
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=96.51 E-value=0.31 Score=55.72 Aligned_cols=90 Identities=14% Similarity=0.255 Sum_probs=62.1
Q ss_pred ceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEE-cCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEec
Q 003907 349 GIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTAS-VYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHR 427 (787)
Q Consensus 349 G~V~IwDl~s~~~v~~~~aH~~pIsaLaFSpdG~lLATaS-~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~r 427 (787)
..+.|+++....+... ..-.+||...+|+|.++.+++.+ .....+.+||+.. ...+.+-.
T Consensus 255 snLyl~~~~e~~i~V~-~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~------------------Nl~~~~Pe 315 (561)
T COG5354 255 SNLYLLRITERSIPVE-KDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRG------------------NLRFYFPE 315 (561)
T ss_pred ceEEEEeeccccccee-ccccccceeeeecccCCceeEEecccccceeeccccc------------------ceEEecCC
Confidence 4688888874433222 25578999999999999999988 4455688999842 12222222
Q ss_pred ccccccEEEEEEccCCCEEEEEeCC---CeEEEEeCC
Q 003907 428 GITSATIQDICFSHYSQWIAIVSSK---GTCHVFVLS 461 (787)
Q Consensus 428 G~~~a~I~slaFSpDg~~LAs~S~d---gTVhIwdl~ 461 (787)
+. =..+.|||.++|+..++.| |.+-|||..
T Consensus 316 ~~----rNT~~fsp~~r~il~agF~nl~gni~i~~~~ 348 (561)
T COG5354 316 QK----RNTIFFSPHERYILFAGFDNLQGNIEIFDPA 348 (561)
T ss_pred cc----cccccccCcccEEEEecCCccccceEEeccC
Confidence 21 1347799999999998876 458888764
No 282
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=96.40 E-value=0.83 Score=49.07 Aligned_cols=31 Identities=23% Similarity=0.522 Sum_probs=28.3
Q ss_pred CCCCeEEEEECCCCCEEEEEEcCCCEEEEEeC
Q 003907 368 HTSPISALCFDPSGTLLVTASVYGNNINIFRI 399 (787)
Q Consensus 368 H~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi 399 (787)
-...|..|+.||||++||+....|. |-||++
T Consensus 228 ~~d~i~kmSlSPdg~~La~ih~sG~-lsLW~i 258 (282)
T PF15492_consen 228 EQDGIFKMSLSPDGSLLACIHFSGS-LSLWEI 258 (282)
T ss_pred CCCceEEEEECCCCCEEEEEEcCCe-EEEEec
Confidence 4678999999999999999999886 999998
No 283
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=96.38 E-value=0.3 Score=52.41 Aligned_cols=96 Identities=15% Similarity=0.247 Sum_probs=57.3
Q ss_pred CCCCeEEEEECCCCCEEEEEEcCCC----------EEEEEeCCCC---cc-cCCCCCCccccCC---cceEEEE----Ee
Q 003907 368 HTSPISALCFDPSGTLLVTASVYGN----------NINIFRIMPS---CM-RSGSGNHKYDWNS---SHVHLYK----LH 426 (787)
Q Consensus 368 H~~pIsaLaFSpdG~lLATaS~dG~----------~IrVWdi~~~---~~-~~~~g~~~~~~~~---s~~~l~~----l~ 426 (787)
+...|+++.++|.-++|..|+.... -+--|.+... +. ...... ...... ...++.. .+
T Consensus 146 yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~-~~~~~~~~~~~~~~~~~~~fs~ 224 (282)
T PF15492_consen 146 YPHGINSAVYHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSED-DITASSKRRGLLRIPSFKFFSR 224 (282)
T ss_pred CCCceeEEEEcCCCCEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCc-cccccccccceeeccceeeeec
Confidence 4779999999999888877654211 2556766431 10 000000 000000 0011111 12
Q ss_pred cccccccEEEEEEccCCCEEEEEeCCCeEEEEeCCCCC
Q 003907 427 RGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFG 464 (787)
Q Consensus 427 rG~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~~~g 464 (787)
.+.....|..|+.||||+.||+...+|.+-||++..-.
T Consensus 225 ~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~ 262 (282)
T PF15492_consen 225 QGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLR 262 (282)
T ss_pred cccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcch
Confidence 23334569999999999999999999999999997643
No 284
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.38 E-value=0.01 Score=65.66 Aligned_cols=96 Identities=25% Similarity=0.266 Sum_probs=75.3
Q ss_pred EEEEECCCCcEEEEeccCCCCeEEEEECCCCC-EEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEeccc
Q 003907 351 VVVKDFVTRAIISQFKAHTSPISALCFDPSGT-LLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGI 429 (787)
Q Consensus 351 V~IwDl~s~~~v~~~~aH~~pIsaLaFSpdG~-lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~ 429 (787)
|++.+-.+.+...-+..|..-|..|+|||... +|..+|. |..|+|+|+.+.+. ...|...
T Consensus 175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl-~nkiki~dlet~~~---------------vssy~a~--- 235 (463)
T KOG1645|consen 175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASL-GNKIKIMDLETSCV---------------VSSYIAY--- 235 (463)
T ss_pred eEEeccCCcchhhcccccchhhhhhccCccccceeeeecc-CceEEEEeccccee---------------eeheecc---
Confidence 77777777776777788999999999999877 7888888 78899999975321 2223332
Q ss_pred ccccEEEEEEccCC-CEEEEEeCCCeEEEEeCCCCCCcc
Q 003907 430 TSATIQDICFSHYS-QWIAIVSSKGTCHVFVLSPFGGDS 467 (787)
Q Consensus 430 ~~a~I~slaFSpDg-~~LAs~S~dgTVhIwdl~~~gg~~ 467 (787)
..|++++|.-|. .+|.+|-.+|.|.|||+....++.
T Consensus 236 --~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~~~~~~ 272 (463)
T KOG1645|consen 236 --NQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQPEGPL 272 (463)
T ss_pred --CCceeeeeccCCcceeEEeccCceEEEEEccCCCchH
Confidence 359999999776 678888899999999998776654
No 285
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=96.28 E-value=0.28 Score=58.48 Aligned_cols=124 Identities=12% Similarity=0.138 Sum_probs=88.1
Q ss_pred eeccCCCCCCCeEEEEEecCcEEEEEccCCCceeEeeeeccCcEEEEEEecCCCCCCCCCCcc--ccCcEEEEEEcCCCC
Q 003907 65 DRLEYGPSVFKQVLLLGYQNGFQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFR--KLHPFLLVVAGEDTN 142 (787)
Q Consensus 65 d~l~~~~~~~~~vL~lG~~~G~qVWdv~~~~~~~ells~~dg~V~~v~~lP~P~~~~~~d~F~--~srpLLavV~~d~~~ 142 (787)
+..++++ +-+++-|..+-+-|-|.-. -+....++.|...|..|++.|.|.-.+ .++ ...++||+ +|-
T Consensus 19 ~A~Dw~~---~GLiAygshslV~VVDs~s-~q~iqsie~h~s~V~~VrWap~~~p~~---llS~~~~~lliAs--aD~-- 87 (1062)
T KOG1912|consen 19 NAADWSP---SGLIAYGSHSLVSVVDSRS-LQLIQSIELHQSAVTSVRWAPAPSPRD---LLSPSSSQLLIAS--ADI-- 87 (1062)
T ss_pred cccccCc---cceEEEecCceEEEEehhh-hhhhhccccCccceeEEEeccCCCchh---ccCccccceeEEe--ccc--
Confidence 3344454 4478888777788888743 446677889999999999999886433 344 24455554 331
Q ss_pred CCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCC-cEEEEEe------cCCeEEE-EeCCeEE
Q 003907 143 TLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRS-SVCMVRC------SPRIVAV-GLATQIY 214 (787)
Q Consensus 143 ~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~v~tL~f~s-~V~sV~~------s~~~LaV-~~~~~I~ 214 (787)
.++|.+||+..+..+..++.+. +|.++.+ ++++|++ -....|.
T Consensus 88 -----------------------------~GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lv 138 (1062)
T KOG1912|consen 88 -----------------------------SGRIILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLV 138 (1062)
T ss_pred -----------------------------cCcEEEEEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEE
Confidence 2589999999999999998764 7777766 3345544 4557899
Q ss_pred EEECCCCceeEEEE
Q 003907 215 CFDALTLENKFSVL 228 (787)
Q Consensus 215 iwD~~T~e~l~tl~ 228 (787)
+|+..||++.+...
T Consensus 139 LwntdtG~k~Wk~~ 152 (1062)
T KOG1912|consen 139 LWNTDTGEKFWKYD 152 (1062)
T ss_pred EEEccCCceeeccc
Confidence 99999999877654
No 286
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=96.24 E-value=0.28 Score=53.78 Aligned_cols=97 Identities=12% Similarity=0.143 Sum_probs=57.8
Q ss_pred ceEEEEECCCCc-EEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEec
Q 003907 349 GIVVVKDFVTRA-IISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHR 427 (787)
Q Consensus 349 G~V~IwDl~s~~-~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~r 427 (787)
+.|.+|++...+ .+.. .-+..++..++....+.+++.++.... +.++..... + ..+..+.+
T Consensus 107 ~~l~v~~l~~~~~l~~~-~~~~~~~~i~sl~~~~~~I~vgD~~~s-v~~~~~~~~------~----------~~l~~va~ 168 (321)
T PF03178_consen 107 NKLYVYDLDNSKTLLKK-AFYDSPFYITSLSVFKNYILVGDAMKS-VSLLRYDEE------N----------NKLILVAR 168 (321)
T ss_dssp TEEEEEEEETTSSEEEE-EEE-BSSSEEEEEEETTEEEEEESSSS-EEEEEEETT------T----------E-EEEEEE
T ss_pred CEEEEEEccCcccchhh-heecceEEEEEEeccccEEEEEEcccC-EEEEEEEcc------C----------CEEEEEEe
Confidence 467777776665 3222 112222233333334668888887554 666644221 1 34555555
Q ss_pred ccccccEEEEEEccCCCEEEEEeCCCeEEEEeCCCC
Q 003907 428 GITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPF 463 (787)
Q Consensus 428 G~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~~~ 463 (787)
-.....+.++.|-.|++.++++..+|.++++..++.
T Consensus 169 d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~ 204 (321)
T PF03178_consen 169 DYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPE 204 (321)
T ss_dssp ESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS
T ss_pred cCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECCC
Confidence 444456899999877789999999999999998753
No 287
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=96.20 E-value=0.032 Score=63.08 Aligned_cols=57 Identities=16% Similarity=0.244 Sum_probs=50.4
Q ss_pred ccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeC
Q 003907 342 GADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRI 399 (787)
Q Consensus 342 ~~s~~~dG~V~IwDl~s~~~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi 399 (787)
+.+++..|.|-|||-.+++.+.-+.+-..-|+||.=+|---+|||++. ++.|+||.-
T Consensus 409 VvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCLEpHP~~PvLAsSGi-d~DVKIWTP 465 (559)
T KOG1334|consen 409 VVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHPHLPVLASSGI-DHDVKIWTP 465 (559)
T ss_pred EEecCccceEEEEecchhHHHHHhhcccceEeccCCCCCCchhhccCC-ccceeeecC
Confidence 346778899999999999999999987779999999999999999999 667999974
No 288
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=96.14 E-value=0.63 Score=50.96 Aligned_cols=97 Identities=23% Similarity=0.305 Sum_probs=61.8
Q ss_pred ceEEEEECCCCcEEEE--e--ccCCCCeEEEEECCCCCEEEEEEcCCC------EEEEEeCCCCcccCCCCCCccccCCc
Q 003907 349 GIVVVKDFVTRAIISQ--F--KAHTSPISALCFDPSGTLLVTASVYGN------NINIFRIMPSCMRSGSGNHKYDWNSS 418 (787)
Q Consensus 349 G~V~IwDl~s~~~v~~--~--~aH~~pIsaLaFSpdG~lLATaS~dG~------~IrVWdi~~~~~~~~~g~~~~~~~~s 418 (787)
-.+...|..+++++.+ + .-|.-.|..|+++++|+.+.-.-.+|- .+-+++- |.
T Consensus 138 psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~---------g~-------- 200 (305)
T PF07433_consen 138 PSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRR---------GG-------- 200 (305)
T ss_pred CceEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcC---------CC--------
Confidence 4566778899998887 5 238889999999999987765544332 1112211 10
Q ss_pred ceEEEEE----ecccccccEEEEEEccCCCEEEEEeCC-CeEEEEeCCCC
Q 003907 419 HVHLYKL----HRGITSATIQDICFSHYSQWIAIVSSK-GTCHVFVLSPF 463 (787)
Q Consensus 419 ~~~l~~l----~rG~~~a~I~slaFSpDg~~LAs~S~d-gTVhIwdl~~~ 463 (787)
...+... .+.. ..-|-+|+|++||.++|++|-+ +.+.+||..+.
T Consensus 201 ~~~~~~~p~~~~~~l-~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg 249 (305)
T PF07433_consen 201 ALRLLPAPEEQWRRL-NGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATG 249 (305)
T ss_pred cceeccCChHHHHhh-CCceEEEEEeCCCCEEEEECCCCCEEEEEECCCC
Confidence 0001110 0111 1248899999999999888765 57999988763
No 289
>KOG4415 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.09 E-value=0.0043 Score=61.93 Aligned_cols=52 Identities=21% Similarity=0.362 Sum_probs=43.1
Q ss_pred cccccceecccccccCCCCccccceeEeeeeeEEeccCC-ccccccceeEEEEcCC
Q 003907 666 LDINDCIVEKSTFKNCSVKSYERSHWYLSNAEVQMSSGR-LPIWQSSKISFFKMDS 720 (787)
Q Consensus 666 ~~~~~~~~~~~~~~~~~~~~~e~~~~~~s~~e~~~~~~~-~p~w~~~~~~f~~~~~ 720 (787)
.|+..+++++... .+...+|+..| ++.+|+.||.++ ..|||.|||.|+.+..
T Consensus 6 gPi~~~~s~dsla--adh~GdEDeeW-l~hVEi~Th~gPHRriWmGPQFef~eih~ 58 (247)
T KOG4415|consen 6 GPIMAFASVDSLA--ADHIGDEDEEW-LPHVEIRTHLGPHRRIWMGPQFEFFEIHE 58 (247)
T ss_pred Cceeeeeeccccc--ccccCcccccc-ccceEEEeccCccceeeecCceeEEEecC
Confidence 5676667766533 26678999999 999999999998 5999999999998876
No 290
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=96.08 E-value=0.0048 Score=73.41 Aligned_cols=122 Identities=15% Similarity=0.108 Sum_probs=77.2
Q ss_pred CCCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCceeEeeeeccCcEEEEEEecCCCCCCCCCCccccC
Q 003907 52 SEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLH 130 (787)
Q Consensus 52 ~~~~~~~v~wa~Fd~l~~~~~~~~~vL~lG~~~G-~qVWdv~~~~~~~ells~~dg~V~~v~~lP~P~~~~~~d~F~~sr 130 (787)
+.++.+..+.+.|-- .-+-|++|.-.| +++|++. +|...+-++.|+.+|..++=.-+ ++
T Consensus 1097 frd~~~~fTc~afs~-------~~~hL~vG~~~Geik~~nv~-sG~~e~s~ncH~SavT~vePs~d-----------gs- 1156 (1516)
T KOG1832|consen 1097 FRDETALFTCIAFSG-------GTNHLAVGSHAGEIKIFNVS-SGSMEESVNCHQSAVTLVEPSVD-----------GS- 1156 (1516)
T ss_pred hhccccceeeEEeec-------CCceEEeeeccceEEEEEcc-CccccccccccccccccccccCC-----------cc-
Confidence 445555556666632 346799999887 9999995 57777889999999998873311 22
Q ss_pred cEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECC-CCeEEEEEeCCCcEEEEEecC---CeEE
Q 003907 131 PFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQ-SHCYEHVLRFRSSVCMVRCSP---RIVA 206 (787)
Q Consensus 131 pLLavV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlk-tg~~v~tL~f~s~V~sV~~s~---~~La 206 (787)
+++..+. . + .--..+|+++ ++...|++.-.. +|.|+. .+++
T Consensus 1157 -~~Ltsss-~---S---------------------------~PlsaLW~~~s~~~~~Hsf~ed~---~vkFsn~~q~r~~ 1201 (1516)
T KOG1832|consen 1157 -TQLTSSS-S---S---------------------------SPLSALWDASSTGGPRHSFDEDK---AVKFSNSLQFRAL 1201 (1516)
T ss_pred -eeeeecc-c---c---------------------------CchHHHhccccccCccccccccc---eeehhhhHHHHHh
Confidence 4443221 0 0 1135689987 466777665433 456655 2333
Q ss_pred EEeCCeEEEEECCCCceeEEEE
Q 003907 207 VGLATQIYCFDALTLENKFSVL 228 (787)
Q Consensus 207 V~~~~~I~iwD~~T~e~l~tl~ 228 (787)
....+...+||++|...+.++.
T Consensus 1202 gt~~d~a~~YDvqT~~~l~tyl 1223 (1516)
T KOG1832|consen 1202 GTEADDALLYDVQTCSPLQTYL 1223 (1516)
T ss_pred cccccceEEEecccCcHHHHhc
Confidence 3334679999999987766654
No 291
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=96.02 E-value=0.18 Score=61.06 Aligned_cols=51 Identities=10% Similarity=0.009 Sum_probs=42.0
Q ss_pred CEEEEEECCCCeEEEEEeCC-CcEEEEEecCCeEEEEeC-C---------eEEEEECCCCce
Q 003907 173 TAVRFYSFQSHCYEHVLRFR-SSVCMVRCSPRIVAVGLA-T---------QIYCFDALTLEN 223 (787)
Q Consensus 173 ~tVrlWdlktg~~v~tL~f~-s~V~sV~~s~~~LaV~~~-~---------~I~iwD~~T~e~ 223 (787)
++|.+-|.++.+.+|++..+ +.|.+++...+.|+++.. . -|++||++.++.
T Consensus 197 G~V~LrD~~s~~~iht~~aHs~siSDfDv~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmra 258 (1118)
T KOG1275|consen 197 GTVFLRDPNSFETIHTFDAHSGSISDFDVQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRA 258 (1118)
T ss_pred ceEEeecCCcCceeeeeeccccceeeeeccCCeEEEeecccccccccccchhhhhhhhhhhc
Confidence 68999999999999999865 589999999988886542 1 178999888864
No 292
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=95.85 E-value=4.8 Score=50.89 Aligned_cols=49 Identities=16% Similarity=0.231 Sum_probs=38.3
Q ss_pred CEEEEEECCCCeEEEEEeCC-----CcEEEEEecC--CeEEEEeCCeEEEEECCCCc
Q 003907 173 TAVRFYSFQSHCYEHVLRFR-----SSVCMVRCSP--RIVAVGLATQIYCFDALTLE 222 (787)
Q Consensus 173 ~tVrlWdlktg~~v~tL~f~-----s~V~sV~~s~--~~LaV~~~~~I~iwD~~T~e 222 (787)
..|.||. |+|.....+..+ ..|..+.||. .+||+...+.|++|-..+..
T Consensus 281 ~~VvFfE-rNGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~vqLWt~~NYH 336 (928)
T PF04762_consen 281 HDVVFFE-RNGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDRVQLWTRSNYH 336 (928)
T ss_pred cEEEEEe-cCCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCCceEEEeeCCE
Confidence 4677777 667766666543 4789999988 79999998899999887765
No 293
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=95.71 E-value=0.061 Score=63.44 Aligned_cols=53 Identities=15% Similarity=0.260 Sum_probs=42.0
Q ss_pred CceEEEEECCCC-cEEEEeccCCCCeEEEEECCC-CCEEEEEEcCCCEEEEEeCCC
Q 003907 348 AGIVVVKDFVTR-AIISQFKAHTSPISALCFDPS-GTLLVTASVYGNNINIFRIMP 401 (787)
Q Consensus 348 dG~V~IwDl~s~-~~v~~~~aH~~pIsaLaFSpd-G~lLATaS~dG~~IrVWdi~~ 401 (787)
...|.|||++.+ .++..+++|...|+.++|+.- -..+.+++.||+ ++.||-..
T Consensus 179 g~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~t-vkfw~y~k 233 (1081)
T KOG0309|consen 179 GNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGT-VKFWDYSK 233 (1081)
T ss_pred CCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCc-eeeecccc
Confidence 456899999875 578899999999999999863 345667777665 99999743
No 294
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=95.62 E-value=4.4 Score=44.32 Aligned_cols=50 Identities=10% Similarity=0.195 Sum_probs=41.3
Q ss_pred CEEEEEECCCC-------eEEEEEeCCCcEEEEEecCCeEEEEeCCeEEEEECCCCc
Q 003907 173 TAVRFYSFQSH-------CYEHVLRFRSSVCMVRCSPRIVAVGLATQIYCFDALTLE 222 (787)
Q Consensus 173 ~tVrlWdlktg-------~~v~tL~f~s~V~sV~~s~~~LaV~~~~~I~iwD~~T~e 222 (787)
+.|.++++... +.++..+++++|++|..-...|+++..++|++|++...+
T Consensus 62 Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~~~~lv~~~g~~l~v~~l~~~~ 118 (321)
T PF03178_consen 62 GRILVFEISESPENNFKLKLIHSTEVKGPVTAICSFNGRLVVAVGNKLYVYDLDNSK 118 (321)
T ss_dssp EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEETTEEEEEETTEEEEEEEETTS
T ss_pred cEEEEEEEEcccccceEEEEEEEEeecCcceEhhhhCCEEEEeecCEEEEEEccCcc
Confidence 68999999885 456667788999999887777999999999999988776
No 295
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=95.49 E-value=2 Score=55.12 Aligned_cols=86 Identities=14% Similarity=0.138 Sum_probs=52.0
Q ss_pred eEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccC-CCCCCccccCCcceEEEEEec--cc----ccccEEEEEEccCCC
Q 003907 372 ISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRS-GSGNHKYDWNSSHVHLYKLHR--GI----TSATIQDICFSHYSQ 444 (787)
Q Consensus 372 IsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~-~~g~~~~~~~~s~~~l~~l~r--G~----~~a~I~slaFSpDg~ 444 (787)
...|+|+|+|+.|..+..+.+.|++||+......- ..|.... ...++.+-. |. .-..-..|+|++||+
T Consensus 742 P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~-----~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~ 816 (1057)
T PLN02919 742 PSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTF-----SDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQ 816 (1057)
T ss_pred ccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEeccccc-----CcccccccCCCCchhhhhccCCceeeEeCCCc
Confidence 45699999999777777767789999985310000 0000000 000111100 00 001246899999999
Q ss_pred EEEEEeCCCeEEEEeCCC
Q 003907 445 WIAIVSSKGTCHVFVLSP 462 (787)
Q Consensus 445 ~LAs~S~dgTVhIwdl~~ 462 (787)
.+++-+.+++|++||...
T Consensus 817 LYVADs~N~rIrviD~~t 834 (1057)
T PLN02919 817 IYVADSYNHKIKKLDPAT 834 (1057)
T ss_pred EEEEECCCCEEEEEECCC
Confidence 999999999999999864
No 296
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=95.47 E-value=0.14 Score=54.32 Aligned_cols=104 Identities=12% Similarity=0.050 Sum_probs=67.0
Q ss_pred cCCCceEEEEECCCC--cEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEE
Q 003907 345 MDNAGIVVVKDFVTR--AIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHL 422 (787)
Q Consensus 345 ~~~dG~V~IwDl~s~--~~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l 422 (787)
+..|.++++.++..+ +....+.. -.++++++|+|++++++.++ -..|-.|.+... + ..+
T Consensus 134 ~sndht~k~~~~~~~s~~~~~h~~~--~~~ns~~~snd~~~~~~Vgd-s~~Vf~y~id~~------s----------ey~ 194 (344)
T KOG4532|consen 134 ASNDHTGKTMVVSGDSNKFAVHNQN--LTQNSLHYSNDPSWGSSVGD-SRRVFRYAIDDE------S----------EYI 194 (344)
T ss_pred ccCCcceeEEEEecCcccceeeccc--cceeeeEEcCCCceEEEecC-CCcceEEEeCCc------c----------cee
Confidence 345666666665433 32222221 23789999999999999877 444667777331 1 111
Q ss_pred EEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEeCCCCCCcc
Q 003907 423 YKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDS 467 (787)
Q Consensus 423 ~~l~rG~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~~~gg~~ 467 (787)
-+.+...+...=.+.+||.....+|+++.||++-|||+...+.+.
T Consensus 195 ~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm 239 (344)
T KOG4532|consen 195 ENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPM 239 (344)
T ss_pred eeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccch
Confidence 112212222334678999999999999999999999998765543
No 297
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=95.41 E-value=0.056 Score=36.81 Aligned_cols=29 Identities=21% Similarity=0.442 Sum_probs=26.5
Q ss_pred cccEEEEEEccCCCEEEEEeCCCeEEEEe
Q 003907 431 SATIQDICFSHYSQWIAIVSSKGTCHVFV 459 (787)
Q Consensus 431 ~a~I~slaFSpDg~~LAs~S~dgTVhIwd 459 (787)
...|.+++|+++++++++++.|+++.+|+
T Consensus 12 ~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 12 TGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred CCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 34699999999999999999999999996
No 298
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=95.29 E-value=0.31 Score=55.78 Aligned_cols=77 Identities=19% Similarity=0.352 Sum_probs=51.5
Q ss_pred CceEEEEECCCCcEEE-EeccCCCCeEEEEECCCCCEEEEEEc-----CCCEEEEEeCCCCcccCCCCCCccccCCcceE
Q 003907 348 AGIVVVKDFVTRAIIS-QFKAHTSPISALCFDPSGTLLVTASV-----YGNNINIFRIMPSCMRSGSGNHKYDWNSSHVH 421 (787)
Q Consensus 348 dG~V~IwDl~s~~~v~-~~~aH~~pIsaLaFSpdG~lLATaS~-----dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~ 421 (787)
.|.+.|||....-.+. .+.+- .-+.+.|+|||.++-++-. .|..|+|||+. | ..
T Consensus 339 ~gni~i~~~~~rf~~~~~~~~~--n~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~--------g----------~~ 398 (561)
T COG5354 339 QGNIEIFDPAGRFKVAGAFNGL--NTSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVY--------G----------AK 398 (561)
T ss_pred ccceEEeccCCceEEEEEeecC--CceEeeccCCceEEEecCCCcccccCcceEEEEec--------C----------ch
Confidence 4667788877655444 56553 2345689999999877633 25569999983 2 12
Q ss_pred EEEEecccccccEEEEEEccCCCEEEEEeCCC
Q 003907 422 LYKLHRGITSATIQDICFSHYSQWIAIVSSKG 453 (787)
Q Consensus 422 l~~l~rG~~~a~I~slaFSpDg~~LAs~S~dg 453 (787)
.. ..+.+.|.|-|++..+.|.+.
T Consensus 399 ~f---------el~~~~W~p~~~~~ttsSs~~ 421 (561)
T COG5354 399 VF---------ELTNITWDPSGQYVTTSSSCP 421 (561)
T ss_pred hh---------hhhhccccCCcccceeeccCC
Confidence 22 235588999999888877665
No 299
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.25 E-value=0.061 Score=61.41 Aligned_cols=119 Identities=18% Similarity=0.200 Sum_probs=77.1
Q ss_pred ccccCCCceEEEEECCC-------CcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCc--------ccC
Q 003907 342 GADMDNAGIVVVKDFVT-------RAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSC--------MRS 406 (787)
Q Consensus 342 ~~s~~~dG~V~IwDl~s-------~~~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~--------~~~ 406 (787)
..+++.|.+|++|.++. ..+..+..+|+.+|..+.|=.+-+++|++. |. |++||---.. ...
T Consensus 750 FiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~ScD--~g-iHlWDPFigr~Laq~~dapk~ 826 (1034)
T KOG4190|consen 750 FISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASCD--GG-IHLWDPFIGRLLAQMEDAPKE 826 (1034)
T ss_pred eeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeecc--Cc-ceeecccccchhHhhhcCccc
Confidence 34678999999999864 236667789999999999999999998764 43 9999931100 000
Q ss_pred CCCCC-----ccc--------cCCcceEEE---------EEec---ccccccEEEEEEccCCCEEEEEeCCCeEEEEeCC
Q 003907 407 GSGNH-----KYD--------WNSSHVHLY---------KLHR---GITSATIQDICFSHYSQWIAIVSSKGTCHVFVLS 461 (787)
Q Consensus 407 ~~g~~-----~~~--------~~~s~~~l~---------~l~r---G~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~ 461 (787)
+.|.. ..+ ...+..+++ +++- -.-++.+.+++..+.|+|+|++-+.|++-+.|..
T Consensus 827 ~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR 906 (1034)
T KOG4190|consen 827 GAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVADKGNKLAAALSNGCIAILDAR 906 (1034)
T ss_pred CCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEeccCcchhhHHhcCCcEEEEecC
Confidence 00100 000 000011111 1211 0113458899999999999999999999999876
Q ss_pred CC
Q 003907 462 PF 463 (787)
Q Consensus 462 ~~ 463 (787)
..
T Consensus 907 ~G 908 (1034)
T KOG4190|consen 907 NG 908 (1034)
T ss_pred CC
Confidence 54
No 300
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.21 E-value=0.85 Score=51.01 Aligned_cols=51 Identities=10% Similarity=0.224 Sum_probs=43.3
Q ss_pred CCEEEEEECCCCeEEEEEeCCCcEEEEEecC---CeEEEEeCC-eEEEEECCCCc
Q 003907 172 PTAVRFYSFQSHCYEHVLRFRSSVCMVRCSP---RIVAVGLAT-QIYCFDALTLE 222 (787)
Q Consensus 172 p~tVrlWdlktg~~v~tL~f~s~V~sV~~s~---~~LaV~~~~-~I~iwD~~T~e 222 (787)
.++|+|.|+.+...+.++..+..++++.|+. +.|-.|+.+ .|++||++..+
T Consensus 215 ~nkiki~dlet~~~vssy~a~~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~~~ 269 (463)
T KOG1645|consen 215 GNKIKIMDLETSCVVSSYIAYNQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQPE 269 (463)
T ss_pred CceEEEEecccceeeeheeccCCceeeeeccCCcceeEEeccCceEEEEEccCCC
Confidence 3799999999999999999899999999976 567777754 59999998655
No 301
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=95.21 E-value=0.059 Score=56.93 Aligned_cols=114 Identities=18% Similarity=0.176 Sum_probs=69.5
Q ss_pred ccCCCceEEEEECCCCc-EEEEeccCCCCeEEEEECC-CCCEEEEEEcCCCEEEEEeCCCCcc-cCCCCCCccccCC-cc
Q 003907 344 DMDNAGIVVVKDFVTRA-IISQFKAHTSPISALCFDP-SGTLLVTASVYGNNINIFRIMPSCM-RSGSGNHKYDWNS-SH 419 (787)
Q Consensus 344 s~~~dG~V~IwDl~s~~-~v~~~~aH~~pIsaLaFSp-dG~lLATaS~dG~~IrVWdi~~~~~-~~~~g~~~~~~~~-s~ 419 (787)
-+..+|.+.|||.++.. ++..+++|+.+|+-+-|+| ++..|.|+|+||. +.-||....+. .+.....-..|-. ..
T Consensus 197 cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGs-lw~wdas~~~l~i~~~~s~~s~WLsgD~ 275 (319)
T KOG4714|consen 197 CGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGS-LWHWDASTTFLSISNQASVISSWLSGDP 275 (319)
T ss_pred EecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCc-EEEEcCCCceEEecCccccccccccCCc
Confidence 56789999999999875 3456789999999999999 6889999999886 66788652211 0000000011110 00
Q ss_pred -eEEEEEecccccccEEEE-EEccCCCEEEEEeCCCeEEEEe
Q 003907 420 -VHLYKLHRGITSATIQDI-CFSHYSQWIAIVSSKGTCHVFV 459 (787)
Q Consensus 420 -~~l~~l~rG~~~a~I~sl-aFSpDg~~LAs~S~dgTVhIwd 459 (787)
.-+.++. +.-+....+| +|.--|..|++|++-+-|.+++
T Consensus 276 v~s~i~i~-~ll~~~~~SinsfDV~g~~lVcgtd~eaIyl~~ 316 (319)
T KOG4714|consen 276 VKSRIEIT-SLLPSRSLSINSFDVLGPCLVCGTDAEAIYLTR 316 (319)
T ss_pred ccceEeee-ccccccceeeeeeeccCceEEeccccceEEEec
Confidence 1111111 1111112222 2455577899999998888764
No 302
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=95.03 E-value=0.76 Score=49.06 Aligned_cols=99 Identities=14% Similarity=0.066 Sum_probs=59.6
Q ss_pred ccccccCCCceEEEEECCCCcEEEEe-----ccCCCCeEEEEECCCCCE-EEEEEcCCCEEEEEeCCCCcccCCCCCCcc
Q 003907 340 HAGADMDNAGIVVVKDFVTRAIISQF-----KAHTSPISALCFDPSGTL-LVTASVYGNNINIFRIMPSCMRSGSGNHKY 413 (787)
Q Consensus 340 ~~~~s~~~dG~V~IwDl~s~~~v~~~-----~aH~~pIsaLaFSpdG~l-LATaS~dG~~IrVWdi~~~~~~~~~g~~~~ 413 (787)
...+.+.+||++-|||++.......+ ..|.+.|..+.|++-|.+ |+--|+.=.-+.|-|++... .
T Consensus 216 ~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~-----~---- 286 (344)
T KOG4532|consen 216 LQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYV-----N---- 286 (344)
T ss_pred ceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCc-----e----
Confidence 34567889999999999886533322 358999999999986653 33344544457888886521 0
Q ss_pred ccCCcceEEE---EEecccccccEEEEEEccCCCEEEEEeCC
Q 003907 414 DWNSSHVHLY---KLHRGITSATIQDICFSHYSQWIAIVSSK 452 (787)
Q Consensus 414 ~~~~s~~~l~---~l~rG~~~a~I~slaFSpDg~~LAs~S~d 452 (787)
.+.+. +..|.+....|..-.|+.++.-+-+.+.+
T Consensus 287 -----~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~v~~e~ 323 (344)
T KOG4532|consen 287 -----HQVIVIPDDVERKHNTQHIFGTNFNNENESNDVKNEL 323 (344)
T ss_pred -----eeEEecCccccccccccccccccccCCCcccccccch
Confidence 01111 00122222347777788777666665544
No 303
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.02 E-value=0.021 Score=65.02 Aligned_cols=85 Identities=20% Similarity=0.312 Sum_probs=62.0
Q ss_pred EEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEc
Q 003907 361 IISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFS 440 (787)
Q Consensus 361 ~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFS 440 (787)
.+..|.+|+..|.+++-=.+.+-+++||. ++++++|.+++. +++-| ...+.++... +...|.++.|=
T Consensus 727 rL~nf~GH~~~iRai~AidNENSFiSASk-DKTVKLWSik~E--gD~~~--------tsaCQfTY~a--Hkk~i~~igfL 793 (1034)
T KOG4190|consen 727 RLCNFTGHQEKIRAIAAIDNENSFISASK-DKTVKLWSIKPE--GDEIG--------TSACQFTYQA--HKKPIHDIGFL 793 (1034)
T ss_pred eeecccCcHHHhHHHHhcccccceeeccC-CceEEEEEeccc--cCccc--------cceeeeEhhh--ccCcccceeee
Confidence 45678899999998876667778889999 556999999874 22212 1134455432 34579999999
Q ss_pred cCCCEEEEEeCCCeEEEEeC
Q 003907 441 HYSQWIAIVSSKGTCHVFVL 460 (787)
Q Consensus 441 pDg~~LAs~S~dgTVhIwdl 460 (787)
.|-++++++ ||-+|+||-
T Consensus 794 ~~lr~i~Sc--D~giHlWDP 811 (1034)
T KOG4190|consen 794 ADLRSIASC--DGGIHLWDP 811 (1034)
T ss_pred eccceeeec--cCcceeecc
Confidence 999988765 788999984
No 304
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=94.86 E-value=0.095 Score=67.20 Aligned_cols=116 Identities=13% Similarity=0.211 Sum_probs=84.1
Q ss_pred ccCCCceEEEEECCCCcEEEEec-cCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcc-----cC-----------
Q 003907 344 DMDNAGIVVVKDFVTRAIISQFK-AHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCM-----RS----------- 406 (787)
Q Consensus 344 s~~~dG~V~IwDl~s~~~v~~~~-aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~-----~~----------- 406 (787)
++++||.|++|....++.+..++ +-...|+.+.|+.+|..+..+..||. +-+|.+.+-+- ++
T Consensus 2225 tgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~-l~l~q~~pk~~~s~qchnk~~~Df~Fi~s 2303 (2439)
T KOG1064|consen 2225 TGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGD-LSLWQASPKPYTSWQCHNKALSDFRFIGS 2303 (2439)
T ss_pred ecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCc-eeecccCCcceeccccCCccccceeeeeh
Confidence 67899999999999998888876 34488999999999999998888775 89999875321 00
Q ss_pred --------CCCCCccccCC----cceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEeCCCCC
Q 003907 407 --------GSGNHKYDWNS----SHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFG 464 (787)
Q Consensus 407 --------~~g~~~~~~~~----s~~~l~~l~rG~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~~~g 464 (787)
..+....+|+. ....+.+.+ ...++++++-|.-+.|.+|+.+|.|.|||+....
T Consensus 2304 ~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H----~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrq 2369 (2439)
T KOG1064|consen 2304 LLATAGRSSDNRNVCLWDTLLPPMNSLVHTCH----DGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQ 2369 (2439)
T ss_pred hhhccccCCCCCcccchhcccCcccceeeeec----CCCceEEEEcCcceEEEecCCcCcEEEeehHHHH
Confidence 01111122322 112222222 2347899999999999999999999999998643
No 305
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=94.69 E-value=0.23 Score=58.84 Aligned_cols=105 Identities=19% Similarity=0.198 Sum_probs=73.5
Q ss_pred ccccCCCceEEEEECCCCc-EEEEeccCCCCeEEEEECC-CCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcc
Q 003907 342 GADMDNAGIVVVKDFVTRA-IISQFKAHTSPISALCFDP-SGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSH 419 (787)
Q Consensus 342 ~~s~~~dG~V~IwDl~s~~-~v~~~~aH~~pIsaLaFSp-dG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~ 419 (787)
++....|-.|..||+++.. .+..+..-...-+.++|+- ++..|| |..|+.|+|||++. |.
T Consensus 130 latcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vla--sshg~~i~vwd~r~-------gs--------- 191 (1081)
T KOG0309|consen 130 LATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLA--SSHGNDIFVWDLRK-------GS--------- 191 (1081)
T ss_pred eeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhh--hccCCceEEEeccC-------CC---------
Confidence 3456678899999998854 4444444344556788886 566665 34588999999864 21
Q ss_pred eEEEEEecccccccEEEEEEccC-CCEEEEEeCCCeEEEEeCCCCCCc
Q 003907 420 VHLYKLHRGITSATIQDICFSHY-SQWIAIVSSKGTCHVFVLSPFGGD 466 (787)
Q Consensus 420 ~~l~~l~rG~~~a~I~slaFSpD-g~~LAs~S~dgTVhIwdl~~~gg~ 466 (787)
..+..+++ +.+.|..+.|..- -..+.+++.|+||+.|+.+....+
T Consensus 192 ~pl~s~K~--~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e 237 (1081)
T KOG0309|consen 192 TPLCSLKG--HVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTE 237 (1081)
T ss_pred cceEEecc--cceeeehHHHhhhhhhhhcccCCCCceeeecccccccc
Confidence 36667765 4467899988743 246889999999999998765443
No 306
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=94.28 E-value=0.17 Score=59.22 Aligned_cols=77 Identities=18% Similarity=0.290 Sum_probs=60.8
Q ss_pred CCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEe-cccccccE-EEEEEccCCCEEE
Q 003907 370 SPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLH-RGITSATI-QDICFSHYSQWIA 447 (787)
Q Consensus 370 ~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~-rG~~~a~I-~slaFSpDg~~LA 447 (787)
..|-.+.|+|.=.++|++-.+|. +-+..+.. ++++++. +|. .+ .+++|.|||+.||
T Consensus 21 ~~i~~~ewnP~~dLiA~~t~~ge-lli~R~n~------------------qRlwtip~p~~---~v~~sL~W~~DGklla 78 (665)
T KOG4640|consen 21 INIKRIEWNPKMDLIATRTEKGE-LLIHRLNW------------------QRLWTIPIPGE---NVTASLCWRPDGKLLA 78 (665)
T ss_pred cceEEEEEcCccchhheeccCCc-EEEEEecc------------------ceeEeccCCCC---ccceeeeecCCCCEEE
Confidence 35667899999999999999887 66776632 4677765 442 23 4999999999999
Q ss_pred EEeCCCeEEEEeCCCCCCccc
Q 003907 448 IVSSKGTCHVFVLSPFGGDSG 468 (787)
Q Consensus 448 s~S~dgTVhIwdl~~~gg~~~ 468 (787)
+|-.||||+|-|+...+....
T Consensus 79 Vg~kdG~I~L~Dve~~~~l~~ 99 (665)
T KOG4640|consen 79 VGFKDGTIRLHDVEKGGRLVS 99 (665)
T ss_pred EEecCCeEEEEEccCCCceec
Confidence 999999999999998765543
No 307
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=94.18 E-value=0.38 Score=55.55 Aligned_cols=82 Identities=16% Similarity=0.217 Sum_probs=57.0
Q ss_pred ceEEEEECCCCcEEEEeccCCC--Ce-EEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEE
Q 003907 349 GIVVVKDFVTRAIISQFKAHTS--PI-SALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKL 425 (787)
Q Consensus 349 G~V~IwDl~s~~~v~~~~aH~~--pI-saLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l 425 (787)
..+.|||+.+|...+.|..-.+ ++ .-..||.|++++|--.. ..|.||+... -.+++.
T Consensus 282 ~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~--~sisIyEtps------------------f~lld~ 341 (698)
T KOG2314|consen 282 QQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG--NSISIYETPS------------------FMLLDK 341 (698)
T ss_pred ceEEEEEccccchhcceeccCCCccccceEEeccCCceeEEecc--ceEEEEecCc------------------eeeecc
Confidence 4689999999999888876322 22 24689999999987654 4599999721 123332
Q ss_pred ecccccccEEEEEEccCCCEEEEEeC
Q 003907 426 HRGITSATIQDICFSHYSQWIAIVSS 451 (787)
Q Consensus 426 ~rG~~~a~I~slaFSpDg~~LAs~S~ 451 (787)
+ ......|.+..|||.++.||--+-
T Consensus 342 K-slki~gIr~FswsP~~~llAYwtp 366 (698)
T KOG2314|consen 342 K-SLKISGIRDFSWSPTSNLLAYWTP 366 (698)
T ss_pred c-ccCCccccCcccCCCcceEEEEcc
Confidence 2 122335899999999998886543
No 308
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=93.60 E-value=0.19 Score=55.07 Aligned_cols=103 Identities=17% Similarity=0.204 Sum_probs=67.7
Q ss_pred ccCCCceEEEEECCCC----cEEEEeccCCCCeEEEEECC-CCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCc
Q 003907 344 DMDNAGIVVVKDFVTR----AIISQFKAHTSPISALCFDP-SGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSS 418 (787)
Q Consensus 344 s~~~dG~V~IwDl~s~----~~v~~~~aH~~pIsaLaFSp-dG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s 418 (787)
.+...|.|.++|++.+ ...++---|.+.|++|..=. ++.+|...+.+|+ |++||++-.... -+
T Consensus 269 ~GcRngeI~~iDLR~rnqG~~~~a~rlyh~Ssvtslq~Lq~s~q~LmaS~M~gk-ikLyD~R~~K~~--~~--------- 336 (425)
T KOG2695|consen 269 NGCRNGEIFVIDLRCRNQGNGWCAQRLYHDSSVTSLQILQFSQQKLMASDMTGK-IKLYDLRATKCK--KS--------- 336 (425)
T ss_pred ecccCCcEEEEEeeecccCCCcceEEEEcCcchhhhhhhccccceEeeccCcCc-eeEeeehhhhcc--cc---------
Confidence 4677899999999875 23333345889999887644 7788888888786 999998542110 00
Q ss_pred ceEEEEEecccccc-cEEEEEEccCCCEEEEEeCCCeEEEEeCCC
Q 003907 419 HVHLYKLHRGITSA-TIQDICFSHYSQWIAIVSSKGTCHVFVLSP 462 (787)
Q Consensus 419 ~~~l~~l~rG~~~a-~I~slaFSpDg~~LAs~S~dgTVhIwdl~~ 462 (787)
...|+ |+-+. .-.-+-..+....++++++|--.+||.++.
T Consensus 337 -V~qYe---GHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ 377 (425)
T KOG2695|consen 337 -VMQYE---GHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDS 377 (425)
T ss_pred -eeeee---cccccccccccccccccceEEEccCeeEEEEEeccc
Confidence 12222 32221 111123346667889999999999999985
No 309
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=93.45 E-value=0.24 Score=53.23 Aligned_cols=103 Identities=18% Similarity=0.164 Sum_probs=70.8
Q ss_pred cccCCCceEEEEECC-CCcEEEE-eccCCCCeEEEEECC-CCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcc
Q 003907 343 ADMDNAGIVVVKDFV-TRAIISQ-FKAHTSPISALCFDP-SGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSH 419 (787)
Q Consensus 343 ~s~~~dG~V~IwDl~-s~~~v~~-~~aH~~pIsaLaFSp-dG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~ 419 (787)
.+++.||.+.-||++ .++.+-+ .+-|+..|.+|.=+| .+.+++|||-|++ |++||++.- |
T Consensus 182 ytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~-i~~~DtRnm------~---------- 244 (339)
T KOG0280|consen 182 YTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDEC-IRVLDTRNM------G---------- 244 (339)
T ss_pred EecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEeccccc-eeeeehhcc------c----------
Confidence 367889999999998 3444444 678999999998876 6999999999665 999998632 2
Q ss_pred eEEEEEecccccccEEEEEEccCC--CEEEEEeCCCeEEEEeCCCCCCc
Q 003907 420 VHLYKLHRGITSATIQDICFSHYS--QWIAIVSSKGTCHVFVLSPFGGD 466 (787)
Q Consensus 420 ~~l~~l~rG~~~a~I~slaFSpDg--~~LAs~S~dgTVhIwdl~~~gg~ 466 (787)
+++++-.- .+-|+.|.++|-- +.|+++=.+| .+|-+++....+
T Consensus 245 kPl~~~~v---~GGVWRi~~~p~~~~~lL~~CMh~G-~ki~~~~~~~~e 289 (339)
T KOG0280|consen 245 KPLFKAKV---GGGVWRIKHHPEIFHRLLAACMHNG-AKILDSSDKVLE 289 (339)
T ss_pred CccccCcc---ccceEEEEecchhhhHHHHHHHhcC-ceEEEecccccc
Confidence 34433221 1348888888743 3444444444 677777665444
No 310
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=93.33 E-value=12 Score=39.12 Aligned_cols=99 Identities=16% Similarity=0.138 Sum_probs=59.5
Q ss_pred ceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecc
Q 003907 349 GIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRG 428 (787)
Q Consensus 349 G~V~IwDl~s~~~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG 428 (787)
|.|..++.. ++....+ ..-.--+.|+|+|+|+.|..+......|..|++... +.. + ...+.+..+..+
T Consensus 115 g~v~~~~~~-~~~~~~~-~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~------~~~---~-~~~~~~~~~~~~ 182 (246)
T PF08450_consen 115 GSVYRIDPD-GKVTVVA-DGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDAD------GGE---L-SNRRVFIDFPGG 182 (246)
T ss_dssp EEEEEEETT-SEEEEEE-EEESSEEEEEEETTSSEEEEEETTTTEEEEEEEETT------TCC---E-EEEEEEEE-SSS
T ss_pred cceEEECCC-CeEEEEe-cCcccccceEECCcchheeecccccceeEEEecccc------ccc---e-eeeeeEEEcCCC
Confidence 566666666 4432222 223456899999999988766665666777877421 100 0 001122333322
Q ss_pred cccccEEEEEEccCCCEEEEEeCCCeEEEEeCC
Q 003907 429 ITSATIQDICFSHYSQWIAIVSSKGTCHVFVLS 461 (787)
Q Consensus 429 ~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~ 461 (787)
. ...-.+++..+|+..++.-..+.|.+|+-+
T Consensus 183 ~--g~pDG~~vD~~G~l~va~~~~~~I~~~~p~ 213 (246)
T PF08450_consen 183 P--GYPDGLAVDSDGNLWVADWGGGRIVVFDPD 213 (246)
T ss_dssp S--CEEEEEEEBTTS-EEEEEETTTEEEEEETT
T ss_pred C--cCCCcceEcCCCCEEEEEcCCCEEEEECCC
Confidence 1 236789999999988888888889988754
No 311
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=93.18 E-value=13 Score=39.29 Aligned_cols=40 Identities=25% Similarity=0.427 Sum_probs=29.9
Q ss_pred CeEEEEEecCcEEEEEccCCCceeEeeeeccCcEEEEEEecC
Q 003907 75 KQVLLLGYQNGFQVLDVEDASNFNELVSKRDGPVSFLQMQPF 116 (787)
Q Consensus 75 ~~vL~lG~~~G~qVWdv~~~~~~~ells~~dg~V~~v~~lP~ 116 (787)
++.|++|+++|+-++++.......+++.... |.-++++|.
T Consensus 7 ~~~L~vGt~~Gl~~~~~~~~~~~~~i~~~~~--I~ql~vl~~ 46 (275)
T PF00780_consen 7 GDRLLVGTEDGLYVYDLSDPSKPTRILKLSS--ITQLSVLPE 46 (275)
T ss_pred CCEEEEEECCCEEEEEecCCccceeEeecce--EEEEEEecc
Confidence 5789999999999999944455556655533 888888863
No 312
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=93.00 E-value=17 Score=40.05 Aligned_cols=70 Identities=17% Similarity=0.276 Sum_probs=47.4
Q ss_pred CCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEE
Q 003907 369 TSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAI 448 (787)
Q Consensus 369 ~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~LAs 448 (787)
..-|-+|+|+++|.++|..|-.|+.+.+||..+ | ..+... .-..++.++-.+++ ++++
T Consensus 216 ~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~t-------g----------~~~~~~----~l~D~cGva~~~~~-f~~s 273 (305)
T PF07433_consen 216 NGYIGSIAADRDGRLIAVTSPRGGRVAVWDAAT-------G----------RLLGSV----PLPDACGVAPTDDG-FLVS 273 (305)
T ss_pred CCceEEEEEeCCCCEEEEECCCCCEEEEEECCC-------C----------CEeecc----ccCceeeeeecCCc-eEEe
Confidence 467889999999999998888899999999864 3 222211 11246778777777 5555
Q ss_pred EeCCCeEEEEeCCCC
Q 003907 449 VSSKGTCHVFVLSPF 463 (787)
Q Consensus 449 ~S~dgTVhIwdl~~~ 463 (787)
++ .|. ++.+...
T Consensus 274 sG-~G~--~~~~~~~ 285 (305)
T PF07433_consen 274 SG-QGQ--LIRLSPD 285 (305)
T ss_pred CC-Ccc--EEEccCc
Confidence 44 443 5555543
No 313
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=92.92 E-value=0.29 Score=57.90 Aligned_cols=104 Identities=13% Similarity=0.089 Sum_probs=74.4
Q ss_pred cccCCCceEEEEECCCCcEEE-EeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceE
Q 003907 343 ADMDNAGIVVVKDFVTRAIIS-QFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVH 421 (787)
Q Consensus 343 ~s~~~dG~V~IwDl~s~~~v~-~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~ 421 (787)
+.+...|.+.+|+-..+.... ...+-++.+..++.|++..++|.|+..| .|-||.+... +- ..
T Consensus 49 ~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g-~V~v~ql~~~------~p---------~~ 112 (726)
T KOG3621|consen 49 AMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASG-RVSVFQLNKE------LP---------RD 112 (726)
T ss_pred EEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCc-eEEeehhhcc------CC---------Cc
Confidence 345678999999977665322 2233556778889999998888888745 5899988531 10 12
Q ss_pred EEEEecccc--cccEEEEEEccCCCEEEEEeCCCeEEEEeCCC
Q 003907 422 LYKLHRGIT--SATIQDICFSHYSQWIAIVSSKGTCHVFVLSP 462 (787)
Q Consensus 422 l~~l~rG~~--~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~~ 462 (787)
+..+.++.. ...|++++||+|++.|.+|.+.|+|+.-.++.
T Consensus 113 ~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 113 LDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred ceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence 222333333 45799999999999999999999999988876
No 314
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=92.67 E-value=0.28 Score=38.81 Aligned_cols=30 Identities=17% Similarity=0.304 Sum_probs=28.1
Q ss_pred ccEEEEEEccCCCEEEEEeCCCeEEEEeCC
Q 003907 432 ATIQDICFSHYSQWIAIVSSKGTCHVFVLS 461 (787)
Q Consensus 432 a~I~slaFSpDg~~LAs~S~dgTVhIwdl~ 461 (787)
+.|..++|||....||.++.||.|.||.++
T Consensus 12 ~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 12 SRVSCMSWCPTMDLIALGTEDGEVLVYRLN 41 (47)
T ss_pred CcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence 469999999999999999999999999984
No 315
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=92.39 E-value=6.7 Score=45.24 Aligned_cols=84 Identities=17% Similarity=0.178 Sum_probs=48.6
Q ss_pred eEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEeccc
Q 003907 350 IVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGI 429 (787)
Q Consensus 350 ~V~IwDl~s~~~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~ 429 (787)
.|.+.|+.++.... +..-.+.-..=.|+|||+.++-+|+.+..-+||-.... |. .....++..+.
T Consensus 263 ~iy~~dl~~~~~~~-Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~------g~--------~~~riT~~~~~ 327 (425)
T COG0823 263 DIYLMDLDGKNLPR-LTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLE------GS--------QVTRLTFSGGG 327 (425)
T ss_pred cEEEEcCCCCccee-cccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCC------CC--------ceeEeeccCCC
Confidence 35555665554222 22211111234799999999998887766677766432 21 12233333222
Q ss_pred ccccEEEEEEccCCCEEEEEeCC
Q 003907 430 TSATIQDICFSHYSQWIAIVSSK 452 (787)
Q Consensus 430 ~~a~I~slaFSpDg~~LAs~S~d 452 (787)
. ..-.|||||++|+..+..
T Consensus 328 ~----~~p~~SpdG~~i~~~~~~ 346 (425)
T COG0823 328 N----SNPVWSPDGDKIVFESSS 346 (425)
T ss_pred C----cCccCCCCCCEEEEEecc
Confidence 1 157799999999998854
No 316
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=92.00 E-value=16 Score=37.33 Aligned_cols=57 Identities=11% Similarity=-0.030 Sum_probs=42.4
Q ss_pred CEEEEEECCCCeEEEEE-eCCC------cEEEEEecCCeEEEEe-CCeEEEEECCCCceeEEEEe
Q 003907 173 TAVRFYSFQSHCYEHVL-RFRS------SVCMVRCSPRIVAVGL-ATQIYCFDALTLENKFSVLT 229 (787)
Q Consensus 173 ~tVrlWdlktg~~v~tL-~f~s------~V~sV~~s~~~LaV~~-~~~I~iwD~~T~e~l~tl~t 229 (787)
+.|..+|.++|+.+.+. .... ......+..+.++++. .+.|+++|+.|++.++....
T Consensus 86 ~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~ 150 (238)
T PF13360_consen 86 GSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPV 150 (238)
T ss_dssp SEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEES
T ss_pred eeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeec
Confidence 47999999999999984 4321 1234445567777776 67899999999999888875
No 317
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=91.92 E-value=2.7 Score=48.48 Aligned_cols=50 Identities=16% Similarity=0.208 Sum_probs=39.5
Q ss_pred CEEEEEECCCCeEEEEEeCCCcEEEEEecC--CeEEEEeCC----eEEEEECCCCc
Q 003907 173 TAVRFYSFQSHCYEHVLRFRSSVCMVRCSP--RIVAVGLAT----QIYCFDALTLE 222 (787)
Q Consensus 173 ~tVrlWdlktg~~v~tL~f~s~V~sV~~s~--~~LaV~~~~----~I~iwD~~T~e 222 (787)
..+.++|+.+++.-..+.|.+.-..-+|++ +.|+.+... .||++|+.+.+
T Consensus 218 ~~i~~~~l~~g~~~~i~~~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~ 273 (425)
T COG0823 218 PRIYYLDLNTGKRPVILNFNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKN 273 (425)
T ss_pred ceEEEEeccCCccceeeccCCccCCccCCCCCCEEEEEECCCCCccEEEEcCCCCc
Confidence 368899999998888888887777778888 777776542 49999988776
No 318
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=91.88 E-value=26 Score=39.53 Aligned_cols=56 Identities=5% Similarity=-0.082 Sum_probs=37.6
Q ss_pred CEEEEEECCCCeEEEEEeCCCcEEEEE--ec----CCeEEE-EeCCeEEEEECCCCceeEEEE
Q 003907 173 TAVRFYSFQSHCYEHVLRFRSSVCMVR--CS----PRIVAV-GLATQIYCFDALTLENKFSVL 228 (787)
Q Consensus 173 ~tVrlWdlktg~~v~tL~f~s~V~sV~--~s----~~~LaV-~~~~~I~iwD~~T~e~l~tl~ 228 (787)
+.|.-+|.++|+.+..++...+...++ .+ ...+.+ ..++.++.+|+.+++.+++..
T Consensus 170 g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~~~~v~~~~~~g~v~a~d~~~G~~~W~~~ 232 (394)
T PRK11138 170 GMLQALNESDGAVKWTVNLDVPSLTLRGESAPATAFGGAIVGGDNGRVSAVLMEQGQLIWQQR 232 (394)
T ss_pred CEEEEEEccCCCEeeeecCCCCcccccCCCCCEEECCEEEEEcCCCEEEEEEccCChhhheec
Confidence 478899999999998887543221111 11 233444 446689999999999887764
No 319
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=91.43 E-value=0.23 Score=52.58 Aligned_cols=95 Identities=16% Similarity=0.197 Sum_probs=61.0
Q ss_pred ceEEEEECCCCcEE-EEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEec
Q 003907 349 GIVVVKDFVTRAII-SQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHR 427 (787)
Q Consensus 349 G~V~IwDl~s~~~v-~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~r 427 (787)
+..++|++.-.+.. ...++ ...|.+++-+|.-+.++.++.++..+-|||.+.. . ...-.|.
T Consensus 159 d~~~a~~~~p~~t~~~~~~~-~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~-------~---------~p~S~l~- 220 (319)
T KOG4714|consen 159 DNFYANTLDPIKTLIPSKKA-LDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNV-------A---------MPVSLLK- 220 (319)
T ss_pred cceeeecccccccccccccc-cccchhhhCCcccccEEEEecCCCeEEEEEcccc-------c---------chHHHHH-
Confidence 34566776543321 11122 2349999999976655555555667999998531 0 0111111
Q ss_pred ccccccEEEEEEcc-CCCEEEEEeCCCeEEEEeCCC
Q 003907 428 GITSATIQDICFSH-YSQWIAIVSSKGTCHVFVLSP 462 (787)
Q Consensus 428 G~~~a~I~slaFSp-Dg~~LAs~S~dgTVhIwdl~~ 462 (787)
.+.+.|+.+-|.| ++..|.+++.||.+.-||-+.
T Consensus 221 -ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 221 -AHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred -HhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence 1346799999998 568999999999999998764
No 320
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=90.97 E-value=0.41 Score=52.47 Aligned_cols=58 Identities=16% Similarity=0.224 Sum_probs=48.7
Q ss_pred ccccCCCceEEEEECCCCc-EEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCC
Q 003907 342 GADMDNAGIVVVKDFVTRA-IISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIM 400 (787)
Q Consensus 342 ~~s~~~dG~V~IwDl~s~~-~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~ 400 (787)
+.++..|-.|.+||+.-++ ....+.+|.+.|.+++.-+--+.|.+++.||. |-+||..
T Consensus 212 LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~-i~~w~mn 270 (404)
T KOG1409|consen 212 LFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQLISCGEDGG-IVVWNMN 270 (404)
T ss_pred EEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhhhheeeeeccCCCe-EEEEecc
Confidence 4467889999999998655 45567899999999999888899999999776 8999975
No 321
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.93 E-value=0.83 Score=54.93 Aligned_cols=89 Identities=17% Similarity=0.140 Sum_probs=63.5
Q ss_pred cccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEE
Q 003907 343 ADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHL 422 (787)
Q Consensus 343 ~s~~~dG~V~IwDl~s~~~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l 422 (787)
+.+...|.|.+++.... . .+...|... +-+|.++||||.||+ |.|..+-+. ...+.
T Consensus 53 ~~GtH~g~v~~~~~~~~-~-~~~~~~s~~------~~~Gey~asCS~DGk-v~I~sl~~~---------------~~~~~ 108 (846)
T KOG2066|consen 53 ALGTHRGAVYLTTCQGN-P-KTNFDHSSS------ILEGEYVASCSDDGK-VVIGSLFTD---------------DEITQ 108 (846)
T ss_pred eeccccceEEEEecCCc-c-ccccccccc------ccCCceEEEecCCCc-EEEeeccCC---------------cccee
Confidence 45677899999987643 2 444455443 778999999999887 677766321 11345
Q ss_pred EEEecccccccEEEEEEccC-----CCEEEEEeCCCeEEEEeCC
Q 003907 423 YKLHRGITSATIQDICFSHY-----SQWIAIVSSKGTCHVFVLS 461 (787)
Q Consensus 423 ~~l~rG~~~a~I~slaFSpD-----g~~LAs~S~dgTVhIwdl~ 461 (787)
+.+.| .|.+|+++|| ++.+++|+..| +-++.-+
T Consensus 109 ~df~r-----piksial~Pd~~~~~sk~fv~GG~ag-lvL~er~ 146 (846)
T KOG2066|consen 109 YDFKR-----PIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERN 146 (846)
T ss_pred EecCC-----cceeEEeccchhhhhhhheeecCcce-EEEehhh
Confidence 66654 5889999999 67899999998 7776543
No 322
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=90.87 E-value=39 Score=43.15 Aligned_cols=51 Identities=20% Similarity=0.162 Sum_probs=35.0
Q ss_pred CcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCceeEeeeeccCcEEEEEEecC
Q 003907 57 DQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPF 116 (787)
Q Consensus 57 ~~v~wa~Fd~l~~~~~~~~~vL~lG~~~G-~qVWdv~~~~~~~ells~~dg~V~~v~~lP~ 116 (787)
+.|+-+.|=. + ..-+.++...| +-+=|.+ ....+++..-+++|.++++.|+
T Consensus 69 ~~i~s~~fl~----d---~~~i~v~~~~G~iilvd~e--t~~~eivg~vd~GI~aaswS~D 120 (1265)
T KOG1920|consen 69 DEIVSVQFLA----D---TNSICVITALGDIILVDPE--TLELEIVGNVDNGISAASWSPD 120 (1265)
T ss_pred cceEEEEEec----c---cceEEEEecCCcEEEEccc--ccceeeeeeccCceEEEeecCC
Confidence 7888777754 1 33455555555 4444654 3467888888999999999986
No 323
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=90.86 E-value=0.42 Score=56.50 Aligned_cols=102 Identities=17% Similarity=0.276 Sum_probs=70.9
Q ss_pred cccccCCCceEEEEECCCC---------------cEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCccc
Q 003907 341 AGADMDNAGIVVVKDFVTR---------------AIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMR 405 (787)
Q Consensus 341 ~~~s~~~dG~V~IwDl~s~---------------~~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~ 405 (787)
.++-++.||.++|..+.+. ..-.++.+|...|.-+.|+.+.+.|-|...+| .|.||=+-.
T Consensus 28 yIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~G-lIiVWmlyk---- 102 (1189)
T KOG2041|consen 28 YIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSG-LIIVWMLYK---- 102 (1189)
T ss_pred eEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCc-eEEEEeeec----
Confidence 3456778888888876542 12346789999999999999999997777755 799997632
Q ss_pred CCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEeC
Q 003907 406 SGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVL 460 (787)
Q Consensus 406 ~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl 460 (787)
|. |- +.+.. .| ....|.+|+|..||+.|+..-.||.|.|=.+
T Consensus 103 ---gs----W~---EEMiN-nR--nKSvV~SmsWn~dG~kIcIvYeDGavIVGsv 144 (1189)
T KOG2041|consen 103 ---GS----WC---EEMIN-NR--NKSVVVSMSWNLDGTKICIVYEDGAVIVGSV 144 (1189)
T ss_pred ---cc----HH---HHHhh-Cc--CccEEEEEEEcCCCcEEEEEEccCCEEEEee
Confidence 20 00 00000 11 2246899999999999999999988765443
No 324
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=90.77 E-value=0.68 Score=50.84 Aligned_cols=91 Identities=20% Similarity=0.296 Sum_probs=54.7
Q ss_pred CCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCcccc---CCcceEEEEEecccc-cccEEEEEEccCCC
Q 003907 369 TSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDW---NSSHVHLYKLHRGIT-SATIQDICFSHYSQ 444 (787)
Q Consensus 369 ~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~---~~s~~~l~~l~rG~~-~a~I~slaFSpDg~ 444 (787)
..-|+++.|+.+|.+||||..+|+ +-+|.-.... + | .+.. -+++..-+....-.. .-.|..|.|-++++
T Consensus 25 adiis~vef~~~Ge~LatGdkgGR-Vv~f~r~~~~--~--~--ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n 97 (433)
T KOG1354|consen 25 ADIISAVEFDHYGERLATGDKGGR-VVLFEREKLY--K--G--EYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGN 97 (433)
T ss_pred hcceeeEEeecccceEeecCCCCe-EEEeeccccc--c--c--ceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCC
Confidence 356899999999999999999666 7788642210 0 0 0000 000000000000000 12488899998874
Q ss_pred --EEEEEeCCCeEEEEeCCCCCCc
Q 003907 445 --WIAIVSSKGTCHVFVLSPFGGD 466 (787)
Q Consensus 445 --~LAs~S~dgTVhIwdl~~~gg~ 466 (787)
.+..++.|.||++|.+...+..
T Consensus 98 ~a~FLlstNdktiKlWKi~er~~k 121 (433)
T KOG1354|consen 98 LAEFLLSTNDKTIKLWKIRERGSK 121 (433)
T ss_pred ccEEEEecCCcceeeeeeeccccc
Confidence 5677889999999999765443
No 325
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.52 E-value=35 Score=42.06 Aligned_cols=49 Identities=8% Similarity=0.163 Sum_probs=33.7
Q ss_pred CceEEEEECCCCc-EEEEeccCCCCeEEEEECCCCC-EEEEEEcCCCEEEEEeC
Q 003907 348 AGIVVVKDFVTRA-IISQFKAHTSPISALCFDPSGT-LLVTASVYGNNINIFRI 399 (787)
Q Consensus 348 dG~V~IwDl~s~~-~v~~~~aH~~pIsaLaFSpdG~-lLATaS~dG~~IrVWdi 399 (787)
...|.+|.+.... ....+..|..+++|-+|++.-. ++++++. .+-+||.
T Consensus 192 t~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~~e---~l~fY~s 242 (933)
T KOG2114|consen 192 TEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAGSE---FLYFYDS 242 (933)
T ss_pred cceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEecCc---eEEEEcC
Confidence 4467777777544 2445778888999999987544 5554444 4889986
No 326
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=90.43 E-value=0.52 Score=54.91 Aligned_cols=57 Identities=16% Similarity=0.252 Sum_probs=45.5
Q ss_pred cccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCC
Q 003907 343 ADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPS 402 (787)
Q Consensus 343 ~s~~~dG~V~IwDl~s~~~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~ 402 (787)
.-+..||.|++||...+. .++.-+.-..+.++|+|+|.+++.|+..|. +.+||+.-.
T Consensus 275 vlGC~DgSiiLyD~~~~~--t~~~ka~~~P~~iaWHp~gai~~V~s~qGe-lQ~FD~ALs 331 (545)
T PF11768_consen 275 VLGCEDGSIILYDTTRGV--TLLAKAEFIPTLIAWHPDGAIFVVGSEQGE-LQCFDMALS 331 (545)
T ss_pred EEEecCCeEEEEEcCCCe--eeeeeecccceEEEEcCCCcEEEEEcCCce-EEEEEeecC
Confidence 357899999999987663 333344556788999999999999999886 999998643
No 327
>PRK02888 nitrous-oxide reductase; Validated
Probab=90.32 E-value=17 Score=43.64 Aligned_cols=55 Identities=18% Similarity=0.184 Sum_probs=39.4
Q ss_pred cCCCceEEEEECCCCc------------EEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCC
Q 003907 345 MDNAGIVVVKDFVTRA------------IISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMP 401 (787)
Q Consensus 345 ~~~dG~V~IwDl~s~~------------~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~ 401 (787)
+..+.+|.|.|+.+.+ ++++..--.+|+ ..+|+++|+...|--.|. .|-.|++..
T Consensus 339 nklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevevGlGPL-HTaFDg~G~aytslf~ds-qv~kwn~~~ 405 (635)
T PRK02888 339 GKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELGLGPL-HTAFDGRGNAYTTLFLDS-QIVKWNIEA 405 (635)
T ss_pred CCCCCcEEEEEChhhhhhhhccCCccceEEEeeccCCCcc-eEEECCCCCEEEeEeecc-eeEEEehHH
Confidence 3456788888887744 456665555665 458999999888888744 588899854
No 328
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=90.24 E-value=0.66 Score=55.92 Aligned_cols=98 Identities=17% Similarity=0.275 Sum_probs=70.5
Q ss_pred ccCCCceEEEEECCCCcEEEEe--ccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceE
Q 003907 344 DMDNAGIVVVKDFVTRAIISQF--KAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVH 421 (787)
Q Consensus 344 s~~~dG~V~IwDl~s~~~v~~~--~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~ 421 (787)
+....|.|.||- .+|++.... +-| +++|||+|.--.||.+=..| .+.||.... ..
T Consensus 36 S~er~GSVtIfa-dtGEPqr~Vt~P~h---atSLCWHpe~~vLa~gwe~g-~~~v~~~~~------------------~e 92 (1416)
T KOG3617|consen 36 SPERGGSVTIFA-DTGEPQRDVTYPVH---ATSLCWHPEEFVLAQGWEMG-VSDVQKTNT------------------TE 92 (1416)
T ss_pred cCCCCceEEEEe-cCCCCCccccccee---hhhhccChHHHHHhhccccc-eeEEEecCC------------------ce
Confidence 456678898874 445433322 223 35699999988899887766 489998632 12
Q ss_pred EEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEeCCCCCC
Q 003907 422 LYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGG 465 (787)
Q Consensus 422 l~~l~rG~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~~~gg 465 (787)
.+..- -.+.+.|+-+.|||||..|+++..=|.||+|.....|.
T Consensus 93 ~htv~-~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~~g~ 135 (1416)
T KOG3617|consen 93 THTVV-ETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDVIGE 135 (1416)
T ss_pred eeeec-cCCCCCceeEEecCCCCeEEEcCCCceeEEEEeeeccc
Confidence 23332 23567899999999999999999999999999986543
No 329
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=89.61 E-value=35 Score=42.39 Aligned_cols=56 Identities=13% Similarity=0.191 Sum_probs=42.8
Q ss_pred cccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCC
Q 003907 343 ADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIM 400 (787)
Q Consensus 343 ~s~~~dG~V~IwDl~s~~~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~ 400 (787)
+.++.+|.||+||-...+....|++-..||..|..+.||++|+... .+.+-|+++.
T Consensus 592 avgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc--~tyLlLi~t~ 647 (794)
T PF08553_consen 592 AVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATC--KTYLLLIDTL 647 (794)
T ss_pred EEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEee--cceEEEEEEe
Confidence 3467899999999665556667778789999999999999865433 3468888863
No 330
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=89.46 E-value=1.1 Score=52.57 Aligned_cols=58 Identities=17% Similarity=0.314 Sum_probs=49.0
Q ss_pred ccccCCCceEEEEECCCCcEEEEeccCCCCeE-EEEECCCCCEEEEEEcCCCEEEEEeCCC
Q 003907 342 GADMDNAGIVVVKDFVTRAIISQFKAHTSPIS-ALCFDPSGTLLVTASVYGNNINIFRIMP 401 (787)
Q Consensus 342 ~~s~~~dG~V~IwDl~s~~~v~~~~aH~~pIs-aLaFSpdG~lLATaS~dG~~IrVWdi~~ 401 (787)
+|.+..+|.|.+.-+. -+.+.+|.-|..+++ ++||.|||++||.|=.||+ |++-|+..
T Consensus 35 iA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~-I~L~Dve~ 93 (665)
T KOG4640|consen 35 IATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGT-IRLHDVEK 93 (665)
T ss_pred hheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCe-EEEEEccC
Confidence 4556778999888887 667888887878887 9999999999999999876 99999864
No 331
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=89.23 E-value=25 Score=44.70 Aligned_cols=98 Identities=15% Similarity=0.237 Sum_probs=59.1
Q ss_pred ceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcC--CCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEe
Q 003907 349 GIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVY--GNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLH 426 (787)
Q Consensus 349 G~V~IwDl~s~~~v~~~~aH~~pIsaLaFSpdG~lLATaS~d--G~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~ 426 (787)
..|+|||-. +.+-.+=..-..-=.+++|-|+|.++|+--.+ +..|.+|.= ||.. +--+.++
T Consensus 222 RkirV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffEr------NGL~----------hg~f~l~ 284 (1265)
T KOG1920|consen 222 RKIRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFER------NGLR----------HGEFVLP 284 (1265)
T ss_pred eeEEEeccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEec------CCcc----------ccccccC
Confidence 689999976 33222111222233479999999999986432 224778863 2111 1112222
Q ss_pred cccccccEEEEEEccCCCEEEE---EeCCCeEEEEeCCCC
Q 003907 427 RGITSATIQDICFSHYSQWIAI---VSSKGTCHVFVLSPF 463 (787)
Q Consensus 427 rG~~~a~I~slaFSpDg~~LAs---~S~dgTVhIwdl~~~ 463 (787)
.-.....|..++|+.++..||+ .....-|.+|-+..|
T Consensus 285 ~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~Ny 324 (1265)
T KOG1920|consen 285 FPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNY 324 (1265)
T ss_pred CcccccchheeeecCCCCceeeeecccccceEEEEEecCe
Confidence 2212223889999999999999 444455999987654
No 332
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=89.20 E-value=0.43 Score=53.10 Aligned_cols=74 Identities=14% Similarity=0.128 Sum_probs=52.7
Q ss_pred CCCeEEEEEecCc-EEEEEccCCCceeEeeeeccCcEEEEEEecCCCCCCCCCCccccCcEEEEEEcCCCCCCCCCCCcC
Q 003907 73 VFKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRS 151 (787)
Q Consensus 73 ~~~~vL~lG~~~G-~qVWdv~~~~~~~ells~~dg~V~~v~~lP~P~~~~~~d~F~~srpLLavV~~d~~~~~~~~~~~~ 151 (787)
.+.+.++.+.+++ |+|-.....-.......+|..-|+.+.+.++ + +|+. ++ |
T Consensus 161 ~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~-------------~-~LlS--~s-----G------ 213 (390)
T KOG3914|consen 161 PDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDN-------------Y-LLLS--GS-----G------ 213 (390)
T ss_pred CCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccC-------------c-eeee--cC-----C------
Confidence 3567888888876 8888875544333445568888999998853 2 3333 21 1
Q ss_pred CCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCC
Q 003907 152 HLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRS 193 (787)
Q Consensus 152 ~~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~v~tL~f~s 193 (787)
+++|++||.++|++++++..++
T Consensus 214 --------------------D~tlr~Wd~~sgk~L~t~dl~s 235 (390)
T KOG3914|consen 214 --------------------DKTLRLWDITSGKLLDTCDLSS 235 (390)
T ss_pred --------------------CCcEEEEecccCCcccccchhH
Confidence 2699999999999999998765
No 333
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=89.07 E-value=0.84 Score=50.22 Aligned_cols=109 Identities=15% Similarity=0.170 Sum_probs=74.2
Q ss_pred CCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEE
Q 003907 346 DNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKL 425 (787)
Q Consensus 346 ~~dG~V~IwDl~s~~~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l 425 (787)
..+-.|-+-|+.++.. ..|. ..+.|.++.|.-.+.++..|...|. |-+.|++..-. | ..++...+
T Consensus 231 G~sqqv~L~nvetg~~-qsf~-sksDVfAlQf~~s~nLv~~GcRnge-I~~iDLR~rnq----G--------~~~~a~rl 295 (425)
T KOG2695|consen 231 GLSQQVLLTNVETGHQ-QSFQ-SKSDVFALQFAGSDNLVFNGCRNGE-IFVIDLRCRNQ----G--------NGWCAQRL 295 (425)
T ss_pred cccceeEEEEeecccc-cccc-cchhHHHHHhcccCCeeEecccCCc-EEEEEeeeccc----C--------CCcceEEE
Confidence 3455677778877642 3343 5678999999999999998888775 88999964211 1 11344444
Q ss_pred ecccccccEEEEEEcc-CCCEEEEEeCCCeEEEEeCCCCCCcc---ccccc
Q 003907 426 HRGITSATIQDICFSH-YSQWIAIVSSKGTCHVFVLSPFGGDS---GFQTL 472 (787)
Q Consensus 426 ~rG~~~a~I~slaFSp-Dg~~LAs~S~dgTVhIwdl~~~gg~~---~~~~H 472 (787)
. +...|+++..=. ++++|++++.+|+|++||+.-.++.. ...+|
T Consensus 296 y---h~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGH 343 (425)
T KOG2695|consen 296 Y---HDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGH 343 (425)
T ss_pred E---cCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecc
Confidence 3 334466665444 67899999999999999998665533 34455
No 334
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=88.79 E-value=14 Score=39.18 Aligned_cols=48 Identities=13% Similarity=-0.077 Sum_probs=39.1
Q ss_pred CCeEEE--EEeCCCcEEEEEecCCeEEEEeCCeEEEEECCCCceeEEEEe
Q 003907 182 SHCYEH--VLRFRSSVCMVRCSPRIVAVGLATQIYCFDALTLENKFSVLT 229 (787)
Q Consensus 182 tg~~v~--tL~f~s~V~sV~~s~~~LaV~~~~~I~iwD~~T~e~l~tl~t 229 (787)
.|+..+ ++++.+...++.+...+|.+..++.|.||++.++++.+++..
T Consensus 216 ~G~~~r~~~i~W~~~p~~~~~~~pyli~~~~~~iEV~~~~~~~lvQ~i~~ 265 (275)
T PF00780_consen 216 NGEPSRKSTIQWSSAPQSVAYSSPYLIAFSSNSIEVRSLETGELVQTIPL 265 (275)
T ss_pred CCCcCcccEEEcCCchhEEEEECCEEEEECCCEEEEEECcCCcEEEEEEC
Confidence 555444 777888888888888788887788899999999999888874
No 335
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=87.83 E-value=57 Score=37.42 Aligned_cols=47 Identities=15% Similarity=0.277 Sum_probs=38.0
Q ss_pred CCEEEEEECCCCeEEEEEeCC-CcEEEEEecC--CeEEEEeCCeEEEEECC
Q 003907 172 PTAVRFYSFQSHCYEHVLRFR-SSVCMVRCSP--RIVAVGLATQIYCFDAL 219 (787)
Q Consensus 172 p~tVrlWdlktg~~v~tL~f~-s~V~sV~~s~--~~LaV~~~~~I~iwD~~ 219 (787)
|..|+||+. +|+.+.++.+. +.|..+.|+. ++|+|..++.+++||..
T Consensus 60 p~~I~iys~-sG~ll~~i~w~~~~iv~~~wt~~e~LvvV~~dG~v~vy~~~ 109 (410)
T PF04841_consen 60 PNSIQIYSS-SGKLLSSIPWDSGRIVGMGWTDDEELVVVQSDGTVRVYDLF 109 (410)
T ss_pred CcEEEEECC-CCCEeEEEEECCCCEEEEEECCCCeEEEEEcCCEEEEEeCC
Confidence 457999997 68888888876 5899999977 56666777889999986
No 336
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=87.68 E-value=1.4 Score=34.90 Aligned_cols=30 Identities=20% Similarity=0.471 Sum_probs=26.9
Q ss_pred CCCeEEEEECCCCCEEEEEEcCCCEEEEEeC
Q 003907 369 TSPISALCFDPSGTLLVTASVYGNNINIFRI 399 (787)
Q Consensus 369 ~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi 399 (787)
..+|.+++|+|...+||.++.+|. |.||++
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~-v~v~Rl 40 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGE-VLVYRL 40 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCe-EEEEEC
Confidence 357999999999999999999886 899988
No 337
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=87.14 E-value=6.6 Score=36.85 Aligned_cols=65 Identities=20% Similarity=0.288 Sum_probs=45.4
Q ss_pred eEEEEEC---CCC-CEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEE
Q 003907 372 ISALCFD---PSG-TLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIA 447 (787)
Q Consensus 372 IsaLaFS---pdG-~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~LA 447 (787)
|++|++. -|| +-|+.||+ +..||||+=. ..++++.. ...|.+|+=... ..++
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~-D~~IRvf~~~-------------------e~~~Ei~e---~~~v~~L~~~~~-~~F~ 57 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSD-DFEIRVFKGD-------------------EIVAEITE---TDKVTSLCSLGG-GRFA 57 (111)
T ss_pred eeEEEEEecCCCCcceEEEecC-CcEEEEEeCC-------------------cEEEEEec---ccceEEEEEcCC-CEEE
Confidence 5566654 343 36777888 5569999842 36667653 346888887776 4589
Q ss_pred EEeCCCeEEEEeC
Q 003907 448 IVSSKGTCHVFVL 460 (787)
Q Consensus 448 s~S~dgTVhIwdl 460 (787)
.+..+|||-||+-
T Consensus 58 Y~l~NGTVGvY~~ 70 (111)
T PF14783_consen 58 YALANGTVGVYDR 70 (111)
T ss_pred EEecCCEEEEEeC
Confidence 9999999998864
No 338
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.10 E-value=25 Score=42.95 Aligned_cols=46 Identities=11% Similarity=0.035 Sum_probs=36.5
Q ss_pred CEEEEEECCCCeEEEEEeCCCcEEEEEecCC-------eEEEEeCCeEEEEEC
Q 003907 173 TAVRFYSFQSHCYEHVLRFRSSVCMVRCSPR-------IVAVGLATQIYCFDA 218 (787)
Q Consensus 173 ~tVrlWdlktg~~v~tL~f~s~V~sV~~s~~-------~LaV~~~~~I~iwD~ 218 (787)
++|.|-.+-+.+..+++.|.-++.+|++.|+ .+++|....+.++.-
T Consensus 93 Gkv~I~sl~~~~~~~~~df~rpiksial~Pd~~~~~sk~fv~GG~aglvL~er 145 (846)
T KOG2066|consen 93 GKVVIGSLFTDDEITQYDFKRPIKSIALHPDFSRQQSKQFVSGGMAGLVLSER 145 (846)
T ss_pred CcEEEeeccCCccceeEecCCcceeEEeccchhhhhhhheeecCcceEEEehh
Confidence 5899999999999999999999999999873 455554444777653
No 339
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=85.47 E-value=2.5 Score=47.14 Aligned_cols=109 Identities=14% Similarity=0.206 Sum_probs=58.5
Q ss_pred CceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCccc--CCCCCCccccCCcceEEEEE
Q 003907 348 AGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMR--SGSGNHKYDWNSSHVHLYKL 425 (787)
Q Consensus 348 dG~V~IwDl~s~~~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~--~~~g~~~~~~~~s~~~l~~l 425 (787)
.+...|+|+.+++....... ...+....|||+|+.||-... +.|.++++...... ...|.... ..+-..-+++-
T Consensus 22 ~~~y~i~d~~~~~~~~l~~~-~~~~~~~~~sP~g~~~~~v~~--~nly~~~~~~~~~~~lT~dg~~~i-~nG~~dwvyeE 97 (353)
T PF00930_consen 22 KGDYYIYDIETGEITPLTPP-PPKLQDAKWSPDGKYIAFVRD--NNLYLRDLATGQETQLTTDGEPGI-YNGVPDWVYEE 97 (353)
T ss_dssp EEEEEEEETTTTEEEESS-E-ETTBSEEEE-SSSTEEEEEET--TEEEEESSTTSEEEESES--TTTE-EESB--HHHHH
T ss_pred ceeEEEEecCCCceEECcCC-ccccccceeecCCCeeEEEec--CceEEEECCCCCeEEeccccceeE-EcCccceeccc
Confidence 46789999999765443333 678899999999999998874 45888876431100 00010000 00000000000
Q ss_pred ecccccccEEEEEEccCCCEEEEEeCC-CeEEEEeCCCC
Q 003907 426 HRGITSATIQDICFSHYSQWIAIVSSK-GTCHVFVLSPF 463 (787)
Q Consensus 426 ~rG~~~a~I~slaFSpDg~~LAs~S~d-gTVhIwdl~~~ 463 (787)
. + -..=..+-|||||++||....| ..|+.+.+..+
T Consensus 98 E--v-~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~ 133 (353)
T PF00930_consen 98 E--V-FDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDY 133 (353)
T ss_dssp H--T-SSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEE
T ss_pred c--c-cccccceEECCCCCEEEEEEECCcCCceEEeecc
Confidence 0 0 0001347899999999988754 44666665443
No 340
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=85.45 E-value=1.9 Score=47.94 Aligned_cols=58 Identities=17% Similarity=0.155 Sum_probs=44.6
Q ss_pred CCEEEEEECCCCeEEEEEeCCCcEEEEEecC----CeEEEEe-CCeEEEEECCCCceeEEEEe
Q 003907 172 PTAVRFYSFQSHCYEHVLRFRSSVCMVRCSP----RIVAVGL-ATQIYCFDALTLENKFSVLT 229 (787)
Q Consensus 172 p~tVrlWdlktg~~v~tL~f~s~V~sV~~s~----~~LaV~~-~~~I~iwD~~T~e~l~tl~t 229 (787)
.+.|-+||+++++.+..+....++.+|..+. .++++.. +..+++||+.|++++.++..
T Consensus 268 gteVWv~D~~t~krv~Ri~l~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~~ 330 (342)
T PF06433_consen 268 GTEVWVYDLKTHKRVARIPLEHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIEQ 330 (342)
T ss_dssp EEEEEEEETTTTEEEEEEEEEEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE--
T ss_pred ceEEEEEECCCCeEEEEEeCCCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehhc
Confidence 3689999999999999999988898888876 2334444 45799999999999988874
No 341
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=84.49 E-value=55 Score=34.07 Aligned_cols=60 Identities=18% Similarity=0.238 Sum_probs=40.3
Q ss_pred CeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEc-cCCCEEEEE
Q 003907 371 PISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFS-HYSQWIAIV 449 (787)
Q Consensus 371 pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFS-pDg~~LAs~ 449 (787)
..-.|+++.+|++.++.-. +..|.++|-. | ..+.++.-.. ..+++++|. +|.+.|.+.
T Consensus 185 ~pDG~~vD~~G~l~va~~~-~~~I~~~~p~--------G----------~~~~~i~~p~--~~~t~~~fgg~~~~~L~vT 243 (246)
T PF08450_consen 185 YPDGLAVDSDGNLWVADWG-GGRIVVFDPD--------G----------KLLREIELPV--PRPTNCAFGGPDGKTLYVT 243 (246)
T ss_dssp EEEEEEEBTTS-EEEEEET-TTEEEEEETT--------S----------CEEEEEE-SS--SSEEEEEEESTTSSEEEEE
T ss_pred CCCcceEcCCCCEEEEEcC-CCEEEEECCC--------c----------cEEEEEcCCC--CCEEEEEEECCCCCEEEEE
Confidence 3677999999998876655 4458888852 3 3555554331 368999994 787777776
Q ss_pred eC
Q 003907 450 SS 451 (787)
Q Consensus 450 S~ 451 (787)
+.
T Consensus 244 ta 245 (246)
T PF08450_consen 244 TA 245 (246)
T ss_dssp EB
T ss_pred eC
Confidence 54
No 342
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=84.48 E-value=24 Score=39.72 Aligned_cols=52 Identities=13% Similarity=0.089 Sum_probs=32.5
Q ss_pred ccCCCceEEEEECCCCcEEEEeccCCCCeEE-EEECCCCCEEEEEEcCCCEEEEEe
Q 003907 344 DMDNAGIVVVKDFVTRAIISQFKAHTSPISA-LCFDPSGTLLVTASVYGNNINIFR 398 (787)
Q Consensus 344 s~~~dG~V~IwDl~s~~~v~~~~aH~~pIsa-LaFSpdG~lLATaS~dG~~IrVWd 398 (787)
.++.+|.+.+.|..+++.+...+-+...+.+ ..+ .+| .|..++.+|+ +..++
T Consensus 340 v~~~~G~l~~ld~~tG~~~~~~~~~~~~~~s~P~~-~~~-~l~v~t~~G~-l~~~~ 392 (394)
T PRK11138 340 VGDSEGYLHWINREDGRFVAQQKVDSSGFLSEPVV-ADD-KLLIQARDGT-VYAIT 392 (394)
T ss_pred EEeCCCEEEEEECCCCCEEEEEEcCCCcceeCCEE-ECC-EEEEEeCCce-EEEEe
Confidence 3467899999999999988877654333332 122 244 5556677675 44444
No 343
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.37 E-value=1.2 Score=55.19 Aligned_cols=74 Identities=11% Similarity=0.101 Sum_probs=52.5
Q ss_pred CCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccc-cccEEEEEEccCCCEEEEEeCCCeEEEE
Q 003907 380 SGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGIT-SATIQDICFSHYSQWIAIVSSKGTCHVF 458 (787)
Q Consensus 380 dG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~-~a~I~slaFSpDg~~LAs~S~dgTVhIw 458 (787)
.+..+|.++..|+ +-.+|... .+..+.+|.. ...|.+++|+.||+.++.|-.+|-|.+|
T Consensus 98 ~~~~ivi~Ts~gh-vl~~d~~~-------------------nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~ 157 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGH-VLLSDMTG-------------------NLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVW 157 (1206)
T ss_pred eeeeEEEEcCchh-hhhhhhhc-------------------ccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEE
Confidence 5677888888676 67777632 1221333322 3479999999999999999999999999
Q ss_pred eCCCCCCcccccccc
Q 003907 459 VLSPFGGDSGFQTLS 473 (787)
Q Consensus 459 dl~~~gg~~~~~~H~ 473 (787)
|+...+....+..|.
T Consensus 158 D~~~~k~l~~i~e~~ 172 (1206)
T KOG2079|consen 158 DMHRAKILKVITEHG 172 (1206)
T ss_pred EccCCcceeeeeecC
Confidence 998755554444443
No 344
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.10 E-value=5.3 Score=48.73 Aligned_cols=106 Identities=15% Similarity=0.125 Sum_probs=74.3
Q ss_pred ccccCCCceEEEEECCCCcEEEEeccCCCC-eEEEEECCCCCEEEEEEcCCC----EEEEEeCCCCcccCCCCCCccccC
Q 003907 342 GADMDNAGIVVVKDFVTRAIISQFKAHTSP-ISALCFDPSGTLLVTASVYGN----NINIFRIMPSCMRSGSGNHKYDWN 416 (787)
Q Consensus 342 ~~s~~~dG~V~IwDl~s~~~v~~~~aH~~p-IsaLaFSpdG~lLATaS~dG~----~IrVWdi~~~~~~~~~g~~~~~~~ 416 (787)
++.+..+|.|.+.+- .-+.+..|++|... |..|-...+-.+|++-.+|+. .++||++.... ++
T Consensus 38 vvigt~~G~V~~Ln~-s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~-----~n------ 105 (933)
T KOG2114|consen 38 VVIGTADGRVVILNS-SFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVD-----KN------ 105 (933)
T ss_pred EEEeeccccEEEecc-cceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccC-----CC------
Confidence 445677888877762 34456889999888 666655555579999998877 79999996521 11
Q ss_pred CcceEEEEEe-----cccccccEEEEEEccCCCEEEEEeCCCeEEEEe
Q 003907 417 SSHVHLYKLH-----RGITSATIQDICFSHYSQWIAIVSSKGTCHVFV 459 (787)
Q Consensus 417 ~s~~~l~~l~-----rG~~~a~I~slaFSpDg~~LAs~S~dgTVhIwd 459 (787)
.+..++++.+ -+....++.+++.|.|-+.+|+|-.+|+|..+.
T Consensus 106 ~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~ 153 (933)
T KOG2114|consen 106 NSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYK 153 (933)
T ss_pred CCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEc
Confidence 0123444332 232234689999999999999999999998874
No 345
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.77 E-value=61 Score=38.15 Aligned_cols=55 Identities=9% Similarity=0.096 Sum_probs=41.9
Q ss_pred cccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeC
Q 003907 343 ADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRI 399 (787)
Q Consensus 343 ~s~~~dG~V~IwDl~s~~~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi 399 (787)
+.++.+|.|++||-...+....|++-..+|..+..+.||+.++... .+.+-|-++
T Consensus 445 vvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc--~tyLlLi~t 499 (644)
T KOG2395|consen 445 VVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATC--KTYLLLIDT 499 (644)
T ss_pred EEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEec--ccEEEEEEE
Confidence 4567899999999855555667888889999999999999765332 345777776
No 346
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=82.50 E-value=4.7 Score=45.98 Aligned_cols=112 Identities=16% Similarity=0.215 Sum_probs=74.1
Q ss_pred CCCceEEEEECCCCc-EEEEe-ccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCc-ceEE
Q 003907 346 DNAGIVVVKDFVTRA-IISQF-KAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSS-HVHL 422 (787)
Q Consensus 346 ~~dG~V~IwDl~s~~-~v~~~-~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s-~~~l 422 (787)
..+|.+.|+|-.... ....+ +-|..||..+.+++.|..+++....| .|.-|.......... + ..+|+-. ..-+
T Consensus 119 ~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~g-mVEyWs~e~~~qfPr-~--~l~~~~K~eTdL 194 (558)
T KOG0882|consen 119 FKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISG-MVEYWSAEGPFQFPR-T--NLNFELKHETDL 194 (558)
T ss_pred ccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeeccccc-eeEeecCCCcccCcc-c--cccccccccchh
Confidence 456788888865433 33334 45999999999999999999888744 699998752110000 0 0111110 0123
Q ss_pred EEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEeCCCC
Q 003907 423 YKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPF 463 (787)
Q Consensus 423 ~~l~rG~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~~~ 463 (787)
|.+-. ......++.|||||..+++-+.|.+|++|+....
T Consensus 195 y~f~K--~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtG 233 (558)
T KOG0882|consen 195 YGFPK--AKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTG 233 (558)
T ss_pred hcccc--cccCccceEEccccCcccccCcccEEEEEEeccc
Confidence 33321 1235789999999999999999999999998753
No 347
>PRK02888 nitrous-oxide reductase; Validated
Probab=81.18 E-value=12 Score=45.03 Aligned_cols=105 Identities=9% Similarity=0.056 Sum_probs=70.0
Q ss_pred CceEEEEECCC-----CcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcc-cCCCCCCccccCCcceE
Q 003907 348 AGIVVVKDFVT-----RAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCM-RSGSGNHKYDWNSSHVH 421 (787)
Q Consensus 348 dG~V~IwDl~s-----~~~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~-~~~~g~~~~~~~~s~~~ 421 (787)
++.|.|.|..+ .+.+..+.--. ....+++||||+++..++.-...+-|.|+..... .. +. .+.....
T Consensus 295 gn~V~VID~~t~~~~~~~v~~yIPVGK-sPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~--~~----~~~~~~v 367 (635)
T PRK02888 295 GSKVPVVDGRKAANAGSALTRYVPVPK-NPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFD--GK----IKPRDAV 367 (635)
T ss_pred CCEEEEEECCccccCCcceEEEEECCC-CccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhh--cc----CCccceE
Confidence 46799999988 45666665433 3367899999999999988777899999864210 00 00 0000012
Q ss_pred EEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEeCCC
Q 003907 422 LYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSP 462 (787)
Q Consensus 422 l~~l~rG~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~~ 462 (787)
..+..-|.. -...+|.++|+...+-.-|..|-.|++..
T Consensus 368 vaevevGlG---PLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 368 VAEPELGLG---PLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred EEeeccCCC---cceEEECCCCCEEEeEeecceeEEEehHH
Confidence 222222322 24588999999888888899999999975
No 348
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=81.12 E-value=4.1 Score=31.77 Aligned_cols=29 Identities=17% Similarity=0.233 Sum_probs=25.3
Q ss_pred EEEEEEccCC---CEEEEEeCCCeEEEEeCCC
Q 003907 434 IQDICFSHYS---QWIAIVSSKGTCHVFVLSP 462 (787)
Q Consensus 434 I~slaFSpDg---~~LAs~S~dgTVhIwdl~~ 462 (787)
|.+|.|||+. .+|+.+-..+-|||+|+..
T Consensus 3 vR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 3 VRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred eEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 7899999855 4899999999999999983
No 349
>PRK13616 lipoprotein LpqB; Provisional
Probab=81.08 E-value=10 Score=45.67 Aligned_cols=97 Identities=11% Similarity=0.154 Sum_probs=56.0
Q ss_pred ceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEE--EEe
Q 003907 349 GIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLY--KLH 426 (787)
Q Consensus 349 G~V~IwDl~s~~~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~--~l~ 426 (787)
..+.+++... .....+.+. ..+.-.|+|||+.|++.+.....+++.+-.. .+ .++ .+.
T Consensus 379 s~Lwv~~~gg-~~~~lt~g~--~~t~PsWspDG~~lw~v~dg~~~~~v~~~~~------~g-----------ql~~~~vd 438 (591)
T PRK13616 379 SSLWVGPLGG-VAVQVLEGH--SLTRPSWSLDADAVWVVVDGNTVVRVIRDPA------TG-----------QLARTPVD 438 (591)
T ss_pred eEEEEEeCCC-cceeeecCC--CCCCceECCCCCceEEEecCcceEEEeccCC------Cc-----------eEEEEecc
Confidence 4566666532 222222332 3777899999999999987435555544211 01 222 221
Q ss_pred cccc----cccEEEEEEccCCCEEEEEeCCCeEEEEeCCC-CCCc
Q 003907 427 RGIT----SATIQDICFSHYSQWIAIVSSKGTCHVFVLSP-FGGD 466 (787)
Q Consensus 427 rG~~----~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~~-~gg~ 466 (787)
.|.. ...|.++.|||||++||... ++.|+|=-+.. .+|.
T Consensus 439 ~ge~~~~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~ 482 (591)
T PRK13616 439 ASAVASRVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQ 482 (591)
T ss_pred CchhhhccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCc
Confidence 1111 23599999999999999887 46666644433 3443
No 350
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=80.68 E-value=1.9 Score=51.39 Aligned_cols=95 Identities=15% Similarity=0.289 Sum_probs=68.0
Q ss_pred ccCCCceEEEEECCCCcEEEEec--cCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceE
Q 003907 344 DMDNAGIVVVKDFVTRAIISQFK--AHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVH 421 (787)
Q Consensus 344 s~~~dG~V~IwDl~s~~~v~~~~--aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~ 421 (787)
+.+.+|.|.||-+-.+.....+. ...+-|.+|+|+.||+.++-.-+||. |.|=.+. |+ +
T Consensus 88 tSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGa-vIVGsvd--------GN----------R 148 (1189)
T KOG2041|consen 88 TSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGA-VIVGSVD--------GN----------R 148 (1189)
T ss_pred ccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCC-EEEEeec--------cc----------e
Confidence 45789999999998776444432 34567899999999999998888776 4443331 21 2
Q ss_pred EE--EEecccccccEEEEEEccCCCEEEEEeCCCeEEEEeCC
Q 003907 422 LY--KLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLS 461 (787)
Q Consensus 422 l~--~l~rG~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~ 461 (787)
++ +| .|.. ...+.||+|.+.+..+-..|.+|++|..
T Consensus 149 IwgKeL-kg~~---l~hv~ws~D~~~~Lf~~ange~hlydnq 186 (1189)
T KOG2041|consen 149 IWGKEL-KGQL---LAHVLWSEDLEQALFKKANGETHLYDNQ 186 (1189)
T ss_pred ecchhc-chhe---ccceeecccHHHHHhhhcCCcEEEeccc
Confidence 21 22 2322 3468899999999888899999999865
No 351
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=79.95 E-value=1 Score=54.70 Aligned_cols=100 Identities=13% Similarity=0.149 Sum_probs=76.0
Q ss_pred cccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCC-EEEEEeCCCCcccCCCCCCccccCCcceE
Q 003907 343 ADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGN-NINIFRIMPSCMRSGSGNHKYDWNSSHVH 421 (787)
Q Consensus 343 ~s~~~dG~V~IwDl~s~~~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~-~IrVWdi~~~~~~~~~g~~~~~~~~s~~~ 421 (787)
+-+...|.|+++++.+|.......+|.++|+-+.=+.||.++.|.|.-.. ...+|++... + ..
T Consensus 1117 ~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~~s~------~----------~~ 1180 (1516)
T KOG1832|consen 1117 AVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDASST------G----------GP 1180 (1516)
T ss_pred EeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHHhccccc------c----------Cc
Confidence 45678899999999999999999999999999999999999888766333 4568987431 1 23
Q ss_pred EEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEeCCCCC
Q 003907 422 LYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFG 464 (787)
Q Consensus 422 l~~l~rG~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~~~g 464 (787)
.+.++. -.++.||...++=+.|+....++|||+.+..
T Consensus 1181 ~Hsf~e------d~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~ 1217 (1516)
T KOG1832|consen 1181 RHSFDE------DKAVKFSNSLQFRALGTEADDALLYDVQTCS 1217 (1516)
T ss_pred cccccc------cceeehhhhHHHHHhcccccceEEEecccCc
Confidence 333321 2458898877777777777789999998743
No 352
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=79.61 E-value=4.5 Score=50.43 Aligned_cols=57 Identities=18% Similarity=0.369 Sum_probs=38.2
Q ss_pred ccCCCceEEEEECCCC-cEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCC
Q 003907 344 DMDNAGIVVVKDFVTR-AIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMP 401 (787)
Q Consensus 344 s~~~dG~V~IwDl~s~-~~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~ 401 (787)
.+...|.|-..|.... .....=..-++||++++|+.||++|+.|=.+|. |.+||+..
T Consensus 104 i~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~-V~v~D~~~ 161 (1206)
T KOG2079|consen 104 IGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGH-VTVWDMHR 161 (1206)
T ss_pred EEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCc-EEEEEccC
Confidence 3444566666665542 111111223679999999999999988877665 99999864
No 353
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=78.88 E-value=1.2e+02 Score=34.14 Aligned_cols=51 Identities=18% Similarity=0.289 Sum_probs=40.6
Q ss_pred eEEEEECCCCcEEEEeccCCCCeEEEEECCCCC-EEEEEEcCCCEEEEEeCCC
Q 003907 350 IVVVKDFVTRAIISQFKAHTSPISALCFDPSGT-LLVTASVYGNNINIFRIMP 401 (787)
Q Consensus 350 ~V~IwDl~s~~~v~~~~aH~~pIsaLaFSpdG~-lLATaS~dG~~IrVWdi~~ 401 (787)
.|.++|+.+++.+..+.. ..++.+|+.+.+.+ +|.+.+..+..+.|||..+
T Consensus 270 eVWv~D~~t~krv~Ri~l-~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~t 321 (342)
T PF06433_consen 270 EVWVYDLKTHKRVARIPL-EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAAT 321 (342)
T ss_dssp EEEEEETTTTEEEEEEEE-EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT
T ss_pred EEEEEECCCCeEEEEEeC-CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcC
Confidence 688899999999999874 23688999999877 6666666455699999865
No 354
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=78.55 E-value=95 Score=34.12 Aligned_cols=54 Identities=15% Similarity=0.081 Sum_probs=38.9
Q ss_pred EEEEECCCCeEEEEEeCCCcEEEEEecC---CeEEEEeC--CeEEEEECCCCceeEEEEe
Q 003907 175 VRFYSFQSHCYEHVLRFRSSVCMVRCSP---RIVAVGLA--TQIYCFDALTLENKFSVLT 229 (787)
Q Consensus 175 VrlWdlktg~~v~tL~f~s~V~sV~~s~---~~LaV~~~--~~I~iwD~~T~e~l~tl~t 229 (787)
+-.++. .|+++..+..+.....|.++| +-++++-. .-.++||..+.+.+.++..
T Consensus 51 ~a~~~e-aGk~v~~~~lpaR~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s 109 (366)
T COG3490 51 AATLSE-AGKIVFATALPARGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVS 109 (366)
T ss_pred EEEEcc-CCceeeeeecccccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEec
Confidence 334453 689999999999999999988 34444431 2389999999888777654
No 355
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=78.37 E-value=4.4 Score=42.55 Aligned_cols=104 Identities=14% Similarity=0.110 Sum_probs=63.7
Q ss_pred ccCCCceEEEEECCCCcEEEE-eccCCCCeEEE-EECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceE
Q 003907 344 DMDNAGIVVVKDFVTRAIISQ-FKAHTSPISAL-CFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVH 421 (787)
Q Consensus 344 s~~~dG~V~IwDl~s~~~v~~-~~aH~~pIsaL-aFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~ 421 (787)
-+..+|.|.+|...-...... ...-..+|.++ .--.++.+..++..+|. ||-|++.++ ++
T Consensus 75 vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~-ir~~n~~p~-----------------k~ 136 (238)
T KOG2444|consen 75 VGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGR-IRACNIKPN-----------------KV 136 (238)
T ss_pred eecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCc-eeeeccccC-----------------ce
Confidence 356789999988762111000 11112233332 22235557777777665 999999873 12
Q ss_pred EEEEeccccc-ccEEEEEEccCCCEEEEE--eCCCeEEEEeCCCCCCcc
Q 003907 422 LYKLHRGITS-ATIQDICFSHYSQWIAIV--SSKGTCHVFVLSPFGGDS 467 (787)
Q Consensus 422 l~~l~rG~~~-a~I~slaFSpDg~~LAs~--S~dgTVhIwdl~~~gg~~ 467 (787)
+ . .+|.++ ..+..+.-+.-+++|+.+ |.|.+++.|++.+.....
T Consensus 137 ~-g-~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~~~d~~ 183 (238)
T KOG2444|consen 137 L-G-YVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEKIKDES 183 (238)
T ss_pred e-e-eeccccCCCcceeEEecCCceEEeeccccchhhhhcchhhhhccC
Confidence 2 1 234444 456667777778888888 899999999998765544
No 356
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=78.22 E-value=4.8 Score=43.90 Aligned_cols=88 Identities=18% Similarity=0.304 Sum_probs=51.4
Q ss_pred CCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCc--c-ccCCcceEEEEEecccc-cccEEEEEEccCC-
Q 003907 369 TSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHK--Y-DWNSSHVHLYKLHRGIT-SATIQDICFSHYS- 443 (787)
Q Consensus 369 ~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~--~-~~~~s~~~l~~l~rG~~-~a~I~slaFSpDg- 443 (787)
...|+++-|+..|.+||||...|+ +.+|.-.... |+.. + .+. ++..-+....... ...|..|.|-.|+
T Consensus 26 ad~ItaVefd~tg~YlatGDkgGR-Vvlfer~~s~-----~ceykf~teFQ-she~EFDYLkSleieEKin~I~w~~~t~ 98 (460)
T COG5170 26 ADKITAVEFDETGLYLATGDKGGR-VVLFEREKSY-----GCEYKFFTEFQ-SHELEFDYLKSLEIEEKINAIEWFDDTG 98 (460)
T ss_pred cceeeEEEeccccceEeecCCCce-EEEeeccccc-----ccchhhhhhhc-ccccchhhhhhccHHHHhhheeeecCCC
Confidence 357899999999999999988554 7788643211 1100 0 000 0000000000000 1147888887766
Q ss_pred -CEEEEEeCCCeEEEEeCCCC
Q 003907 444 -QWIAIVSSKGTCHVFVLSPF 463 (787)
Q Consensus 444 -~~LAs~S~dgTVhIwdl~~~ 463 (787)
..+..++.|.||+||.+-..
T Consensus 99 r~hFLlstNdktiKlWKiyek 119 (460)
T COG5170 99 RNHFLLSTNDKTIKLWKIYEK 119 (460)
T ss_pred cceEEEecCCceeeeeeeecc
Confidence 35677788999999998654
No 357
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=77.53 E-value=24 Score=42.69 Aligned_cols=102 Identities=13% Similarity=0.159 Sum_probs=65.1
Q ss_pred CceEEEEECCCCcEEEEec-cCCCCeEEEEE--CCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEE
Q 003907 348 AGIVVVKDFVTRAIISQFK-AHTSPISALCF--DPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYK 424 (787)
Q Consensus 348 dG~V~IwDl~s~~~v~~~~-aH~~pIsaLaF--SpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~ 424 (787)
...+.|||...+.....-. ...++|..+.| .|+|+.+.+-+- ++.|.++.-... +... ..++...+.+
T Consensus 50 ~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf-~~~v~l~~Q~R~---dy~~-----~~p~w~~i~~ 120 (631)
T PF12234_consen 50 RSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGF-PHHVLLYTQLRY---DYTN-----KGPSWAPIRK 120 (631)
T ss_pred CCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEc-CcEEEEEEccch---hhhc-----CCcccceeEE
Confidence 4579999998876433322 45688999988 478999888888 566888854211 0000 0112234443
Q ss_pred Ee-cccccccEEEEEEccCCCEEEEEeCCCeEEEEeC
Q 003907 425 LH-RGITSATIQDICFSHYSQWIAIVSSKGTCHVFVL 460 (787)
Q Consensus 425 l~-rG~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl 460 (787)
+. +..+...|.+..|-+||..++.++ .-+.||+-
T Consensus 121 i~i~~~T~h~Igds~Wl~~G~LvV~sG--Nqlfv~dk 155 (631)
T PF12234_consen 121 IDISSHTPHPIGDSIWLKDGTLVVGSG--NQLFVFDK 155 (631)
T ss_pred EEeecCCCCCccceeEecCCeEEEEeC--CEEEEECC
Confidence 32 345656899999999997666554 34778763
No 358
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=77.07 E-value=27 Score=43.00 Aligned_cols=90 Identities=16% Similarity=0.327 Sum_probs=55.6
Q ss_pred CCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCC-cc-ccCCcceE-EEE----EecccccccEEEEEEccC
Q 003907 370 SPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNH-KY-DWNSSHVH-LYK----LHRGITSATIQDICFSHY 442 (787)
Q Consensus 370 ~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~-~~-~~~~s~~~-l~~----l~rG~~~a~I~slaFSpD 442 (787)
..|..|.+||+|++||-++..| |-|-.+ |... |.. .+ +......+ .+. +.+......|..+.|+|.
T Consensus 85 f~v~~i~~n~~g~~lal~G~~~--v~V~~L-P~r~----g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~ 157 (717)
T PF10168_consen 85 FEVHQISLNPTGSLLALVGPRG--VVVLEL-PRRW----GKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPW 157 (717)
T ss_pred eeEEEEEECCCCCEEEEEcCCc--EEEEEe-cccc----CccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCC
Confidence 4688899999999999999865 555555 2110 100 00 00000011 111 111122346999999997
Q ss_pred C---CEEEEEeCCCeEEEEeCCCCCCc
Q 003907 443 S---QWIAIVSSKGTCHVFVLSPFGGD 466 (787)
Q Consensus 443 g---~~LAs~S~dgTVhIwdl~~~gg~ 466 (787)
+ ..|++=++|+++++||+.....+
T Consensus 158 s~~~~~l~vLtsdn~lR~y~~~~~~~p 184 (717)
T PF10168_consen 158 SESDSHLVVLTSDNTLRLYDISDPQHP 184 (717)
T ss_pred CCCCCeEEEEecCCEEEEEecCCCCCC
Confidence 4 89999999999999999754443
No 359
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=76.85 E-value=1.6e+02 Score=34.53 Aligned_cols=57 Identities=11% Similarity=0.057 Sum_probs=40.8
Q ss_pred CEEEEEECCCCeEEEEEeCCCcE---EEE----EecCCeEEEEe----------CCeEEEEECCCCceeEEEEe
Q 003907 173 TAVRFYSFQSHCYEHVLRFRSSV---CMV----RCSPRIVAVGL----------ATQIYCFDALTLENKFSVLT 229 (787)
Q Consensus 173 ~tVrlWdlktg~~v~tL~f~s~V---~sV----~~s~~~LaV~~----------~~~I~iwD~~T~e~l~tl~t 229 (787)
+.|.-+|.++|+.+...+....+ +.+ .+...+++++. .+.++.+|+.|++.+++...
T Consensus 120 g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~ 193 (488)
T cd00216 120 GRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYT 193 (488)
T ss_pred CeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCceeeEeec
Confidence 57888999999999888765441 112 22235555543 35799999999999998875
No 360
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=76.40 E-value=1.5e+02 Score=34.45 Aligned_cols=58 Identities=16% Similarity=0.272 Sum_probs=36.9
Q ss_pred CCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEeC
Q 003907 381 GTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVL 460 (787)
Q Consensus 381 G~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl 460 (787)
|.+|+..+. + .|.+||+.. + ..+.++. ...|..+.||+||+++|..+.+ ++.|++.
T Consensus 117 G~LL~~~~~-~-~i~~yDw~~-------~----------~~i~~i~----v~~vk~V~Ws~~g~~val~t~~-~i~il~~ 172 (443)
T PF04053_consen 117 GNLLGVKSS-D-FICFYDWET-------G----------KLIRRID----VSAVKYVIWSDDGELVALVTKD-SIYILKY 172 (443)
T ss_dssp SSSEEEEET-T-EEEEE-TTT-------------------EEEEES----S-E-EEEEE-TTSSEEEEE-S--SEEEEEE
T ss_pred CcEEEEECC-C-CEEEEEhhH-------c----------ceeeEEe----cCCCcEEEEECCCCEEEEEeCC-eEEEEEe
Confidence 899988876 4 599999854 2 3444442 2248899999999999999866 6778775
Q ss_pred CC
Q 003907 461 SP 462 (787)
Q Consensus 461 ~~ 462 (787)
+.
T Consensus 173 ~~ 174 (443)
T PF04053_consen 173 NL 174 (443)
T ss_dssp -H
T ss_pred cc
Confidence 53
No 361
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=75.76 E-value=40 Score=38.12 Aligned_cols=94 Identities=16% Similarity=0.188 Sum_probs=65.4
Q ss_pred CceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcC--CCEEEEEeCCCCcccCCCCCCccccCCcceEEEEE
Q 003907 348 AGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVY--GNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKL 425 (787)
Q Consensus 348 dG~V~IwDl~s~~~v~~~~aH~~pIsaLaFSpdG~lLATaS~d--G~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l 425 (787)
+..|.+.|..+.+....+.--. --..++|+|+|+.+..+... ...+.+.|-.. + ..+.+.
T Consensus 95 ~~~v~vid~~~~~~~~~~~vG~-~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t-------~----------~~~~~~ 156 (381)
T COG3391 95 SNTVSVIDTATNTVLGSIPVGL-GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAAT-------N----------KVTATI 156 (381)
T ss_pred CCeEEEEcCcccceeeEeeecc-CCceEEECCCCCEEEEEecccCCceEEEEeCCC-------C----------eEEEEE
Confidence 6788999988877776665333 33578999999888777762 45677777543 1 233445
Q ss_pred ecccccccEEEEEEccCCCEEEEEe-CCCeEEEEeCCC
Q 003907 426 HRGITSATIQDICFSHYSQWIAIVS-SKGTCHVFVLSP 462 (787)
Q Consensus 426 ~rG~~~a~I~slaFSpDg~~LAs~S-~dgTVhIwdl~~ 462 (787)
..|... ..++|+|||+.+.++. .++++.+++.+.
T Consensus 157 ~vG~~P---~~~a~~p~g~~vyv~~~~~~~v~vi~~~~ 191 (381)
T COG3391 157 PVGNTP---TGVAVDPDGNKVYVTNSDDNTVSVIDTSG 191 (381)
T ss_pred ecCCCc---ceEEECCCCCeEEEEecCCCeEEEEeCCC
Confidence 555432 7899999999666655 789999999543
No 362
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=75.05 E-value=5 Score=48.86 Aligned_cols=67 Identities=22% Similarity=0.325 Sum_probs=54.3
Q ss_pred CccccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCC
Q 003907 333 SVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIM 400 (787)
Q Consensus 333 ~~~~~~~~~~~s~~~dG~V~IwDl~s~~~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~ 400 (787)
-.|.+-...++.+-.-|.+.+|...+.+.-..-..|..+|.-|.||++|+.|+|+..-| .+.+|...
T Consensus 65 LCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g-~v~lwr~d 131 (1416)
T KOG3617|consen 65 LCWHPEEFVLAQGWEMGVSDVQKTNTTETHTVVETHPAPIQGLDWSHDGTVLMTLDNPG-SVHLWRYD 131 (1416)
T ss_pred hccChHHHHHhhccccceeEEEecCCceeeeeccCCCCCceeEEecCCCCeEEEcCCCc-eeEEEEee
Confidence 44665555556677789999999988776666678999999999999999999998866 58999764
No 363
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=74.91 E-value=39 Score=38.65 Aligned_cols=87 Identities=15% Similarity=0.167 Sum_probs=48.9
Q ss_pred CeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccC---CCCCCc-----------------------cccCCcceEEEE
Q 003907 371 PISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRS---GSGNHK-----------------------YDWNSSHVHLYK 424 (787)
Q Consensus 371 pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~---~~g~~~-----------------------~~~~~s~~~l~~ 424 (787)
.|+++.|.++-.-||.+-..|. +-||........+ ...... ........+++-
T Consensus 3 ~v~~vs~a~~t~Elav~~~~Ge-Vv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l 81 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGE-VVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTL 81 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS--EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCc-EEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhh
Confidence 5789999998777888877786 6787654321110 000000 000111222222
Q ss_pred EecccccccEEEEEEccCCCEEEEEeCCCeEEEEeCC
Q 003907 425 LHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLS 461 (787)
Q Consensus 425 l~rG~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~ 461 (787)
++- ..+.|++++.| |=-++|+|..+|++-|.|+.
T Consensus 82 ~~~--~~g~vtal~~S-~iGFvaigy~~G~l~viD~R 115 (395)
T PF08596_consen 82 LDA--KQGPVTALKNS-DIGFVAIGYESGSLVVIDLR 115 (395)
T ss_dssp E-----S-SEEEEEE--BTSEEEEEETTSEEEEEETT
T ss_pred eec--cCCcEeEEecC-CCcEEEEEecCCcEEEEECC
Confidence 221 24579999998 55599999999999999994
No 364
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=74.89 E-value=35 Score=39.37 Aligned_cols=47 Identities=13% Similarity=0.203 Sum_probs=30.5
Q ss_pred CCCEEEEEECCCCeEEEEEeCCC---cEEEEEecC------CeEEEEeCCeEEEEE
Q 003907 171 SPTAVRFYSFQSHCYEHVLRFRS---SVCMVRCSP------RIVAVGLATQIYCFD 217 (787)
Q Consensus 171 ~p~tVrlWdlktg~~v~tL~f~s---~V~sV~~s~------~~LaV~~~~~I~iwD 217 (787)
..+++.|||+++++.++++.+.. -.+.|+|-. -++.+++..+|..|-
T Consensus 220 yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~ 275 (461)
T PF05694_consen 220 YGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFY 275 (461)
T ss_dssp S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEE
T ss_pred ccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEE
Confidence 35899999999999999999863 567888743 245556666665553
No 365
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=74.85 E-value=25 Score=39.78 Aligned_cols=100 Identities=13% Similarity=0.107 Sum_probs=57.4
Q ss_pred cCCCceEEEEECCCCcEEEEe-ccCCCCeEEEEECCCCCEEEEEEcCC----------CEEEEEeCCCCcccCCCCCCcc
Q 003907 345 MDNAGIVVVKDFVTRAIISQF-KAHTSPISALCFDPSGTLLVTASVYG----------NNINIFRIMPSCMRSGSGNHKY 413 (787)
Q Consensus 345 ~~~dG~V~IwDl~s~~~v~~~-~aH~~pIsaLaFSpdG~lLATaS~dG----------~~IrVWdi~~~~~~~~~g~~~~ 413 (787)
|+...+++|+|+.+++.+..- ..- .-..++|.+||+.|.-...+. ..|..|++....
T Consensus 146 G~e~~~l~v~Dl~tg~~l~d~i~~~--~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~~~gt~~---------- 213 (414)
T PF02897_consen 146 GSEWYTLRVFDLETGKFLPDGIENP--KFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRHKLGTPQ---------- 213 (414)
T ss_dssp TSSEEEEEEEETTTTEEEEEEEEEE--ESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEEEEETTS-G----------
T ss_pred CCceEEEEEEECCCCcCcCCccccc--ccceEEEeCCCCEEEEEEeCcccccccCCCCcEEEEEECCCCh----------
Confidence 344468999999999876532 221 112399999988876665432 235666663210
Q ss_pred ccCCcceEEEEEeccccccc-EEEEEEccCCCEEEEEeCCCe----EEEEeCCC
Q 003907 414 DWNSSHVHLYKLHRGITSAT-IQDICFSHYSQWIAIVSSKGT----CHVFVLSP 462 (787)
Q Consensus 414 ~~~~s~~~l~~l~rG~~~a~-I~slaFSpDg~~LAs~S~dgT----VhIwdl~~ 462 (787)
.....+++-. .... ..++..|+|+++|+..+..++ +++.++..
T Consensus 214 ---~~d~lvfe~~---~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~ 261 (414)
T PF02897_consen 214 ---SEDELVFEEP---DEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDD 261 (414)
T ss_dssp ---GG-EEEEC-T---TCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCC
T ss_pred ---HhCeeEEeec---CCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccc
Confidence 0012444332 2233 678999999999887655443 44445443
No 366
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=74.84 E-value=1.8e+02 Score=34.12 Aligned_cols=57 Identities=16% Similarity=0.008 Sum_probs=39.1
Q ss_pred CEEEEEECCCCeEEEEEeCCCc-------E--EEEEecC-CeEEEE-eCCeEEEEECCCCceeEEEEe
Q 003907 173 TAVRFYSFQSHCYEHVLRFRSS-------V--CMVRCSP-RIVAVG-LATQIYCFDALTLENKFSVLT 229 (787)
Q Consensus 173 ~tVrlWdlktg~~v~tL~f~s~-------V--~sV~~s~-~~LaV~-~~~~I~iwD~~T~e~l~tl~t 229 (787)
++|.-.|+++|+.+.+.+.... + ..+.... ..|.++ .++.|+.+|+.|++.+++...
T Consensus 71 g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~~~~~V~v~~~~g~v~AlD~~TG~~~W~~~~ 138 (488)
T cd00216 71 SALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYWDPRKVFFGTFDGRLVALDAETGKQVWKFGN 138 (488)
T ss_pred CcEEEEECCCChhhceeCCCCCccccccccccCCcEEccCCeEEEecCCCeEEEEECCCCCEeeeecC
Confidence 5688889999998887765432 1 1122322 455554 567899999999999888764
No 367
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=74.69 E-value=2.5e+02 Score=35.72 Aligned_cols=96 Identities=11% Similarity=0.143 Sum_probs=63.9
Q ss_pred CceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEec
Q 003907 348 AGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHR 427 (787)
Q Consensus 348 dG~V~IwDl~s~~~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~r 427 (787)
...|++|++.+.+.++.=..|..++.+|...-.|..+|.|..-+ .|.+-..+.. .| .+.+.-|
T Consensus 847 n~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~-Sitll~y~~~-----eg-----------~f~evAr 909 (1096)
T KOG1897|consen 847 NQSVRLYEWTTERELRIECNISNPIIALDLQVKGDEIAVGDLMR-SITLLQYKGD-----EG-----------NFEEVAR 909 (1096)
T ss_pred CcEEEEEEccccceehhhhcccCCeEEEEEEecCcEEEEeeccc-eEEEEEEecc-----CC-----------ceEEeeh
Confidence 45799999999877777678889999999999999999987733 3444333211 02 3555555
Q ss_pred ccccccEEEEEEccCCCEEEEEeCCCeEEEEeCC
Q 003907 428 GITSATIQDICFSHYSQWIAIVSSKGTCHVFVLS 461 (787)
Q Consensus 428 G~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~ 461 (787)
-....++..+.+=.|..+ +.+..+|.+.+-..+
T Consensus 910 D~~p~Wmtaveil~~d~y-lgae~~gNlf~v~~d 942 (1096)
T KOG1897|consen 910 DYNPNWMTAVEILDDDTY-LGAENSGNLFTVRKD 942 (1096)
T ss_pred hhCccceeeEEEecCceE-EeecccccEEEEEec
Confidence 545456777777655554 445566666665544
No 368
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=74.33 E-value=8.9 Score=47.38 Aligned_cols=93 Identities=15% Similarity=0.184 Sum_probs=60.1
Q ss_pred CCceEEEEECCCC--cEEE-Eec--cCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceE
Q 003907 347 NAGIVVVKDFVTR--AIIS-QFK--AHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVH 421 (787)
Q Consensus 347 ~dG~V~IwDl~s~--~~v~-~~~--aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~ 421 (787)
.+..+..||.+-. +++. +.+ ......+|++-+.+| +||.||.+|. ||+||- . | ..
T Consensus 550 s~n~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs~~aTt~~G-~iavgs~~G~-IRLyd~-~-------g----------~~ 609 (794)
T PF08553_consen 550 SDNSLFRIDPRLSGNKLVDSQSKQYSSKNNFSCFATTEDG-YIAVGSNKGD-IRLYDR-L-------G----------KR 609 (794)
T ss_pred CCCceEEeccCCCCCceeeccccccccCCCceEEEecCCc-eEEEEeCCCc-EEeecc-c-------c----------hh
Confidence 3455667777642 2221 111 234578899998888 6888999887 999983 1 2 11
Q ss_pred EEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEeCC
Q 003907 422 LYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLS 461 (787)
Q Consensus 422 l~~l~rG~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~ 461 (787)
-.++.-|. ..+|..|..+.||+||++.+.. -+.|++..
T Consensus 610 AKT~lp~l-G~pI~~iDvt~DGkwilaTc~t-yLlLi~t~ 647 (794)
T PF08553_consen 610 AKTALPGL-GDPIIGIDVTADGKWILATCKT-YLLLIDTL 647 (794)
T ss_pred hhhcCCCC-CCCeeEEEecCCCcEEEEeecc-eEEEEEEe
Confidence 11222222 2579999999999999888765 46676654
No 369
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=73.84 E-value=1.1e+02 Score=34.12 Aligned_cols=50 Identities=14% Similarity=0.117 Sum_probs=38.6
Q ss_pred CEEEEEECCCCeEEEEEeCCCcEEEEEecC--CeEEEEeCCeEEEEECCCCc
Q 003907 173 TAVRFYSFQSHCYEHVLRFRSSVCMVRCSP--RIVAVGLATQIYCFDALTLE 222 (787)
Q Consensus 173 ~tVrlWdlktg~~v~tL~f~s~V~sV~~s~--~~LaV~~~~~I~iwD~~T~e 222 (787)
..+.+||+.+++..........+....++| +.||...++.|++++..+++
T Consensus 23 ~~y~i~d~~~~~~~~l~~~~~~~~~~~~sP~g~~~~~v~~~nly~~~~~~~~ 74 (353)
T PF00930_consen 23 GDYYIYDIETGEITPLTPPPPKLQDAKWSPDGKYIAFVRDNNLYLRDLATGQ 74 (353)
T ss_dssp EEEEEEETTTTEEEESS-EETTBSEEEE-SSSTEEEEEETTEEEEESSTTSE
T ss_pred eeEEEEecCCCceEECcCCccccccceeecCCCeeEEEecCceEEEECCCCC
Confidence 578999999987654333456788888888 78888889999999988773
No 370
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=73.46 E-value=66 Score=30.31 Aligned_cols=87 Identities=11% Similarity=0.167 Sum_probs=56.7
Q ss_pred cccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEE
Q 003907 343 ADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHL 422 (787)
Q Consensus 343 ~s~~~dG~V~IwDl~s~~~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l 422 (787)
..++.|..|+||+- .+.+.++..+ +.|.+|+-... ..++.|-..|+ |-||+-. .++
T Consensus 19 lvGs~D~~IRvf~~--~e~~~Ei~e~-~~v~~L~~~~~-~~F~Y~l~NGT-VGvY~~~-------------------~Rl 74 (111)
T PF14783_consen 19 LVGSDDFEIRVFKG--DEIVAEITET-DKVTSLCSLGG-GRFAYALANGT-VGVYDRS-------------------QRL 74 (111)
T ss_pred EEecCCcEEEEEeC--CcEEEEEecc-cceEEEEEcCC-CEEEEEecCCE-EEEEeCc-------------------cee
Confidence 35678999999984 4677777765 45666666555 56888888786 8999842 355
Q ss_pred EEEecccccccEEEEEEcc---CC-CEEEEEeCCCeEE
Q 003907 423 YKLHRGITSATIQDICFSH---YS-QWIAIVSSKGTCH 456 (787)
Q Consensus 423 ~~l~rG~~~a~I~slaFSp---Dg-~~LAs~S~dgTVh 456 (787)
++.... ..+.++++.. || .-|++|=++|.|-
T Consensus 75 WRiKSK---~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 75 WRIKSK---NQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred eeeccC---CCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 555432 2355555443 33 3577777777664
No 371
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=73.06 E-value=8.2 Score=30.12 Aligned_cols=30 Identities=23% Similarity=0.331 Sum_probs=23.3
Q ss_pred CCeEEEEECCCC---CEEEEEEcCCCEEEEEeCC
Q 003907 370 SPISALCFDPSG---TLLVTASVYGNNINIFRIM 400 (787)
Q Consensus 370 ~pIsaLaFSpdG---~lLATaS~dG~~IrVWdi~ 400 (787)
+.|.+++|||+. .+||-+-..|. |.|+|++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~-vhi~D~R 33 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGR-VHIVDTR 33 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCe-EEEEEcc
Confidence 368899999854 48887766565 9999986
No 372
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=71.86 E-value=1.7e+02 Score=32.45 Aligned_cols=100 Identities=14% Similarity=0.146 Sum_probs=55.3
Q ss_pred ceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecc
Q 003907 349 GIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRG 428 (787)
Q Consensus 349 G~V~IwDl~s~~~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG 428 (787)
|.|..+|. .+..+..+..|-.-=+.|||||||+.|..+......|.-|++.+. . +. ......+....
T Consensus 143 G~lyr~~p-~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~-~----g~------~~~~~~~~~~~- 209 (307)
T COG3386 143 GSLYRVDP-DGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPA-T----GP------IGGRRGFVDFD- 209 (307)
T ss_pred ceEEEEcC-CCCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcc-c----Cc------cCCcceEEEcc-
Confidence 44444443 455566666654455789999999988888876666777766421 0 10 00012122111
Q ss_pred cccccEEEEEEccCCCEEEEEeCCC-eEEEEeCC
Q 003907 429 ITSATIQDICFSHYSQWIAIVSSKG-TCHVFVLS 461 (787)
Q Consensus 429 ~~~a~I~slaFSpDg~~LAs~S~dg-TVhIwdl~ 461 (787)
.....--.++...||.+-+++-.+| -|++|+-+
T Consensus 210 ~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd 243 (307)
T COG3386 210 EEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD 243 (307)
T ss_pred CCCCCCCceEEeCCCCEEEecccCCceEEEECCC
Confidence 1112234566777777664444443 78887655
No 373
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=71.12 E-value=13 Score=27.33 Aligned_cols=31 Identities=13% Similarity=0.285 Sum_probs=20.9
Q ss_pred cCCCCeEEEEECCCCCEEEEEEcCC--CEEEEE
Q 003907 367 AHTSPISALCFDPSGTLLVTASVYG--NNINIF 397 (787)
Q Consensus 367 aH~~pIsaLaFSpdG~lLATaS~dG--~~IrVW 397 (787)
-....-..-+|||||+.|+-++..+ ....||
T Consensus 6 ~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 6 NSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp -SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred cCCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 3445667889999999999888755 334454
No 374
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=69.66 E-value=23 Score=39.08 Aligned_cols=70 Identities=19% Similarity=0.234 Sum_probs=41.0
Q ss_pred CCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEE
Q 003907 369 TSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAI 448 (787)
Q Consensus 369 ~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~LAs 448 (787)
.+.+..+..++||+++|.++. |....-||- |. +..+.+ .|. ....|++|.|+||+...++
T Consensus 144 ~gs~~~~~r~~dG~~vavs~~-G~~~~s~~~---------G~-------~~w~~~--~r~-~~~riq~~gf~~~~~lw~~ 203 (302)
T PF14870_consen 144 SGSINDITRSSDGRYVAVSSR-GNFYSSWDP---------GQ-------TTWQPH--NRN-SSRRIQSMGFSPDGNLWML 203 (302)
T ss_dssp ---EEEEEE-TTS-EEEEETT-SSEEEEE-T---------T--------SS-EEE--E---SSS-EEEEEE-TTS-EEEE
T ss_pred cceeEeEEECCCCcEEEEECc-ccEEEEecC---------CC-------ccceEE--ccC-ccceehhceecCCCCEEEE
Confidence 367888999999999998876 987778873 31 112333 233 3357999999999887665
Q ss_pred EeCCCeEEEEe
Q 003907 449 VSSKGTCHVFV 459 (787)
Q Consensus 449 ~S~dgTVhIwd 459 (787)
+ ..|-++.=+
T Consensus 204 ~-~Gg~~~~s~ 213 (302)
T PF14870_consen 204 A-RGGQIQFSD 213 (302)
T ss_dssp E-TTTEEEEEE
T ss_pred e-CCcEEEEcc
Confidence 5 667776654
No 375
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=69.56 E-value=33 Score=39.24 Aligned_cols=83 Identities=19% Similarity=0.330 Sum_probs=53.5
Q ss_pred EEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEe-c-----ccccccE
Q 003907 361 IISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLH-R-----GITSATI 434 (787)
Q Consensus 361 ~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~-r-----G~~~a~I 434 (787)
+...+....++|++++.|.=| ++|.|.++|+ +.|.|++ |- .-+|.-. + ......|
T Consensus 78 P~~l~~~~~g~vtal~~S~iG-Fvaigy~~G~-l~viD~R--------GP---------avI~~~~i~~~~~~~~~~~~v 138 (395)
T PF08596_consen 78 PLTLLDAKQGPVTALKNSDIG-FVAIGYESGS-LVVIDLR--------GP---------AVIYNENIRESFLSKSSSSYV 138 (395)
T ss_dssp EEEEE---S-SEEEEEE-BTS-EEEEEETTSE-EEEEETT--------TT---------EEEEEEEGGG--T-SS----E
T ss_pred chhheeccCCcEeEEecCCCc-EEEEEecCCc-EEEEECC--------CC---------eEEeeccccccccccccccCe
Confidence 445556668999999998555 9999998775 8999994 21 2344321 1 1122358
Q ss_pred EEEEEcc-----CC---CEEEEEeCCCeEEEEeCCC
Q 003907 435 QDICFSH-----YS---QWIAIVSSKGTCHVFVLSP 462 (787)
Q Consensus 435 ~slaFSp-----Dg---~~LAs~S~dgTVhIwdl~~ 462 (787)
++|.|+- |+ -.|.+|++.|++.+|+|-+
T Consensus 139 t~ieF~vm~~~~D~ySSi~L~vGTn~G~v~~fkIlp 174 (395)
T PF08596_consen 139 TSIEFSVMTLGGDGYSSICLLVGTNSGNVLTFKILP 174 (395)
T ss_dssp EEEEEEEEE-TTSSSEEEEEEEEETTSEEEEEEEEE
T ss_pred eEEEEEEEecCCCcccceEEEEEeCCCCEEEEEEec
Confidence 8888872 43 4789999999999999975
No 376
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=69.49 E-value=25 Score=34.21 Aligned_cols=53 Identities=11% Similarity=0.161 Sum_probs=40.1
Q ss_pred CEEEEEECC--------CCeEEEEEeCCCcEEEEEec-------CCeEEEEeCCeEEEEECCCCceeE
Q 003907 173 TAVRFYSFQ--------SHCYEHVLRFRSSVCMVRCS-------PRIVAVGLATQIYCFDALTLENKF 225 (787)
Q Consensus 173 ~tVrlWdlk--------tg~~v~tL~f~s~V~sV~~s-------~~~LaV~~~~~I~iwD~~T~e~l~ 225 (787)
++|.|++.. ....+..|.+...|.+|+.- ++.|++|....+-.||+..-..++
T Consensus 20 gKV~IH~ph~~~~~~~~~~~~i~~LNin~~italaaG~l~~~~~~D~LliGt~t~llaYDV~~N~d~F 87 (136)
T PF14781_consen 20 GKVFIHNPHERGQRTGRQDSDISFLNINQEITALAAGRLKPDDGRDCLLIGTQTSLLAYDVENNSDLF 87 (136)
T ss_pred CEEEEECCCccccccccccCceeEEECCCceEEEEEEecCCCCCcCEEEEeccceEEEEEcccCchhh
Confidence 477777655 44578889999988888653 378999999999999987654433
No 377
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=68.24 E-value=70 Score=36.18 Aligned_cols=94 Identities=12% Similarity=0.197 Sum_probs=64.4
Q ss_pred CCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEE--
Q 003907 347 NAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYK-- 424 (787)
Q Consensus 347 ~dG~V~IwDl~s~~~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~-- 424 (787)
.++++.+.|..+++.+..+..-..| ..++|+|+|+.+..+..++..|.++|.... .+.+
T Consensus 138 ~~~~vsvid~~t~~~~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~------------------~v~~~~ 198 (381)
T COG3391 138 GNNTVSVIDAATNKVTATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGN------------------SVVRGS 198 (381)
T ss_pred CCceEEEEeCCCCeEEEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCc------------------ceeccc
Confidence 4678899999999888887665567 889999999987777765667999996431 1111
Q ss_pred ----EecccccccEEEEEEccCCCEEEEEeCC---CeEEEEeCCC
Q 003907 425 ----LHRGITSATIQDICFSHYSQWIAIVSSK---GTCHVFVLSP 462 (787)
Q Consensus 425 ----l~rG~~~a~I~slaFSpDg~~LAs~S~d---gTVhIwdl~~ 462 (787)
...+. .-..++++|||+++.+.-.. +++-+.|...
T Consensus 199 ~~~~~~~~~---~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~ 240 (381)
T COG3391 199 VGSLVGVGT---GPAGIAVDPDGNRVYVANDGSGSNNVLKIDTAT 240 (381)
T ss_pred cccccccCC---CCceEEECCCCCEEEEEeccCCCceEEEEeCCC
Confidence 11111 23678999999976665544 3666655543
No 378
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=67.13 E-value=12 Score=27.59 Aligned_cols=26 Identities=15% Similarity=0.335 Sum_probs=19.3
Q ss_pred cEEEEEEccCCCEEEEEeCC---CeEEEE
Q 003907 433 TIQDICFSHYSQWIAIVSSK---GTCHVF 458 (787)
Q Consensus 433 ~I~slaFSpDg~~LAs~S~d---gTVhIw 458 (787)
.....+|||||++|+-++.. |.-.||
T Consensus 10 ~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 10 DDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp SEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred cccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 46778999999999888765 566666
No 379
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=65.05 E-value=1.4e+02 Score=32.28 Aligned_cols=58 Identities=7% Similarity=0.055 Sum_probs=44.7
Q ss_pred CCEEEEEECCCCeEEEEEeCCCcEEEEEecCCeEEEEe-CCeEEEEECCCCceeEEEEe
Q 003907 172 PTAVRFYSFQSHCYEHVLRFRSSVCMVRCSPRIVAVGL-ATQIYCFDALTLENKFSVLT 229 (787)
Q Consensus 172 p~tVrlWdlktg~~v~tL~f~s~V~sV~~s~~~LaV~~-~~~I~iwD~~T~e~l~tl~t 229 (787)
.++.-+||.++-+.+.++.+++.=+.+..+.+.|..+. .++|+++|..+++...++.-
T Consensus 109 ~~~~f~yd~~tl~~~~~~~y~~EGWGLt~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V 167 (264)
T PF05096_consen 109 EGTGFVYDPNTLKKIGTFPYPGEGWGLTSDGKRLIMSDGSSRLYFLDPETFKEVRTIQV 167 (264)
T ss_dssp SSEEEEEETTTTEEEEEEE-SSS--EEEECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-
T ss_pred CCeEEEEccccceEEEEEecCCcceEEEcCCCEEEEECCccceEEECCcccceEEEEEE
Confidence 36899999999999999999999999998887777765 46899999999998888763
No 380
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=64.96 E-value=32 Score=38.92 Aligned_cols=63 Identities=14% Similarity=0.221 Sum_probs=39.7
Q ss_pred CeEEEEECCCCCEEEEE-EcCCC---EEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEE
Q 003907 371 PISALCFDPSGTLLVTA-SVYGN---NINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWI 446 (787)
Q Consensus 371 pIsaLaFSpdG~lLATa-S~dG~---~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~L 446 (787)
.+...++||||++||-+ +..|. .|+|+|+.. | ..+...-.+ ..-..++|.+||+.|
T Consensus 125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~t-------g----------~~l~d~i~~---~~~~~~~W~~d~~~~ 184 (414)
T PF02897_consen 125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLET-------G----------KFLPDGIEN---PKFSSVSWSDDGKGF 184 (414)
T ss_dssp EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTT-------T----------EEEEEEEEE---EESEEEEECTTSSEE
T ss_pred EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCC-------C----------cCcCCcccc---cccceEEEeCCCCEE
Confidence 44578999999999865 44332 599999964 3 232221111 112349999999887
Q ss_pred EEEeCCC
Q 003907 447 AIVSSKG 453 (787)
Q Consensus 447 As~S~dg 453 (787)
.....+.
T Consensus 185 ~y~~~~~ 191 (414)
T PF02897_consen 185 FYTRFDE 191 (414)
T ss_dssp EEEECST
T ss_pred EEEEeCc
Confidence 7665443
No 381
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=61.63 E-value=86 Score=30.59 Aligned_cols=58 Identities=19% Similarity=0.145 Sum_probs=42.7
Q ss_pred CCCEEEEEECCCCeEEEEEeCCCcEEEEEe------cCCeEEEEeCCeEEEEECCCCceeEEEE
Q 003907 171 SPTAVRFYSFQSHCYEHVLRFRSSVCMVRC------SPRIVAVGLATQIYCFDALTLENKFSVL 228 (787)
Q Consensus 171 ~p~tVrlWdlktg~~v~tL~f~s~V~sV~~------s~~~LaV~~~~~I~iwD~~T~e~l~tl~ 228 (787)
+++.|..||...+..+---+.+.-|.+|.+ ...+++||....|..||..--|..+++.
T Consensus 71 t~t~llaYDV~~N~d~Fyke~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e~fWtVt 134 (136)
T PF14781_consen 71 TQTSLLAYDVENNSDLFYKEVPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNEIFWTVT 134 (136)
T ss_pred ccceEEEEEcccCchhhhhhCccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcEEEEEec
Confidence 347899999998877665566777777766 2256667766679999988777777664
No 382
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=60.96 E-value=3.4e+02 Score=33.67 Aligned_cols=75 Identities=15% Similarity=0.194 Sum_probs=49.7
Q ss_pred CCeEEEEEC--CCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCC---C
Q 003907 370 SPISALCFD--PSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYS---Q 444 (787)
Q Consensus 370 ~pIsaLaFS--pdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg---~ 444 (787)
..++.|++. ...+++|.++. ...|.||-....... . .+..... +...|-+|+|-++. .
T Consensus 164 ~SaWGLdIh~~~~~rlIAVSsN-s~~VTVFaf~l~~~r---~----------~~~~s~~---~~hNIP~VSFl~~~~d~~ 226 (717)
T PF08728_consen 164 ASAWGLDIHDYKKSRLIAVSSN-SQEVTVFAFALVDER---F----------YHVPSHQ---HSHNIPNVSFLDDDLDPN 226 (717)
T ss_pred CceeEEEEEecCcceEEEEecC-CceEEEEEEeccccc---c----------ccccccc---cccCCCeeEeecCCCCCc
Confidence 378889998 77778877666 677999876431000 0 0111111 22359999997654 2
Q ss_pred ---EEEEEeCCCeEEEEeCC
Q 003907 445 ---WIAIVSSKGTCHVFVLS 461 (787)
Q Consensus 445 ---~LAs~S~dgTVhIwdl~ 461 (787)
+|++++-.|.+-+|++.
T Consensus 227 G~v~v~a~dI~G~v~~~~I~ 246 (717)
T PF08728_consen 227 GHVKVVATDISGEVWTFKIK 246 (717)
T ss_pred cceEEEEEeccCcEEEEEEE
Confidence 89999999999999883
No 383
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=59.57 E-value=72 Score=35.29 Aligned_cols=32 Identities=19% Similarity=0.346 Sum_probs=24.5
Q ss_pred EEEEEccCCCEEEEEeC-CCeEEEEeCCCCCCc
Q 003907 435 QDICFSHYSQWIAIVSS-KGTCHVFVLSPFGGD 466 (787)
Q Consensus 435 ~slaFSpDg~~LAs~S~-dgTVhIwdl~~~gg~ 466 (787)
..|+||||++.|..+-. .+.||-|++....+.
T Consensus 166 NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~ 198 (307)
T COG3386 166 NGLAFSPDGKTLYVADTPANRIHRYDLDPATGP 198 (307)
T ss_pred CceEECCCCCEEEEEeCCCCeEEEEecCcccCc
Confidence 57999999987766654 588999998864443
No 384
>smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2. Unpublished observations.
Probab=57.79 E-value=97 Score=33.93 Aligned_cols=38 Identities=26% Similarity=0.549 Sum_probs=30.3
Q ss_pred eEEEEEecCcEEEEEccCC-CceeEeeeeccCcEEEEEEec
Q 003907 76 QVLLLGYQNGFQVLDVEDA-SNFNELVSKRDGPVSFLQMQP 115 (787)
Q Consensus 76 ~vL~lG~~~G~qVWdv~~~-~~~~ells~~dg~V~~v~~lP 115 (787)
+.|++|++.|+-+.|++.. +...++++++ +|..+++++
T Consensus 14 ~~lL~GTe~Gly~~~~~~~~~~~~kl~~~~--~v~q~~v~~ 52 (302)
T smart00036 14 KWLLVGTEEGLYVLNISDQPGTLEKLIGRR--SVTQIWVLE 52 (302)
T ss_pred cEEEEEeCCceEEEEcccCCCCeEEecCcC--ceEEEEEEh
Confidence 5799999999988888543 4577777765 699999985
No 385
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=55.27 E-value=36 Score=41.26 Aligned_cols=45 Identities=16% Similarity=0.306 Sum_probs=38.4
Q ss_pred CEEEEEECCCCeEEEEEeC--CCcEEEEEecC-----CeEEEEeCCeEEEEE
Q 003907 173 TAVRFYSFQSHCYEHVLRF--RSSVCMVRCSP-----RIVAVGLATQIYCFD 217 (787)
Q Consensus 173 ~tVrlWdlktg~~v~tL~f--~s~V~sV~~s~-----~~LaV~~~~~I~iwD 217 (787)
.++.|||.+.+....+-.| ...|.++++.. -+|+||+..+|.+|-
T Consensus 51 ~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~ 102 (631)
T PF12234_consen 51 SELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYT 102 (631)
T ss_pred CEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEE
Confidence 6899999999987777777 67999999854 589999999998884
No 386
>PRK13616 lipoprotein LpqB; Provisional
Probab=55.17 E-value=58 Score=39.34 Aligned_cols=98 Identities=16% Similarity=0.195 Sum_probs=57.5
Q ss_pred CceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEE---EE
Q 003907 348 AGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHL---YK 424 (787)
Q Consensus 348 dG~V~IwDl~s~~~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l---~~ 424 (787)
.+.+.+.++..++... .....|..+.|||||+.||-... |+ |.|=-+... ..|. ..+ .+
T Consensus 429 ~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~~-g~-v~Va~Vvr~----~~G~---------~~l~~~~~ 490 (591)
T PRK13616 429 TGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMIIG-GK-VYLAVVEQT----EDGQ---------YALTNPRE 490 (591)
T ss_pred CceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEEC-CE-EEEEEEEeC----CCCc---------eeecccEE
Confidence 3455555665554322 33567999999999999988774 64 555333221 0121 122 22
Q ss_pred EecccccccEEEEEEccCCCEEEEEeCCCeEEEEeCCCCCC
Q 003907 425 LHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGG 465 (787)
Q Consensus 425 l~rG~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~~~gg 465 (787)
+..+.. ..+.+++|..|+..+ ++..++...+|.++-.|.
T Consensus 491 l~~~l~-~~~~~l~W~~~~~L~-V~~~~~~~~v~~v~vDG~ 529 (591)
T PRK13616 491 VGPGLG-DTAVSLDWRTGDSLV-VGRSDPEHPVWYVNLDGS 529 (591)
T ss_pred eecccC-CccccceEecCCEEE-EEecCCCCceEEEecCCc
Confidence 222211 235789999999954 666666667787765443
No 387
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=55.16 E-value=1.7e+02 Score=33.95 Aligned_cols=107 Identities=15% Similarity=0.230 Sum_probs=52.9
Q ss_pred CCCceEEEEECCCCcEEEEeccCC-C-CeEEEEE--CCCCCEEEEEEc-CCCEEEEEeCCCCcccCCCCCCccccCCcce
Q 003907 346 DNAGIVVVKDFVTRAIISQFKAHT-S-PISALCF--DPSGTLLVTASV-YGNNINIFRIMPSCMRSGSGNHKYDWNSSHV 420 (787)
Q Consensus 346 ~~dG~V~IwDl~s~~~v~~~~aH~-~-pIsaLaF--SpdG~lLATaS~-dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~ 420 (787)
.....+.+||+.+.+.+++|.--. + -...|.| +|+..+=.++.. ..++.++|.... | .|.. +
T Consensus 219 ~yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~-------g----~W~a--~ 285 (461)
T PF05694_consen 219 KYGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDD-------G----EWAA--E 285 (461)
T ss_dssp -S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ET-------T----EEEE--E
T ss_pred cccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCC-------C----Ceee--e
Confidence 345789999999999999886432 2 2334555 565555333333 233333333211 1 1211 2
Q ss_pred EEEEEec---------------ccccccEEEEEEccCCCEEEEEe-CCCeEEEEeCCCCCC
Q 003907 421 HLYKLHR---------------GITSATIQDICFSHYSQWIAIVS-SKGTCHVFVLSPFGG 465 (787)
Q Consensus 421 ~l~~l~r---------------G~~~a~I~slaFSpDg~~LAs~S-~dgTVhIwdl~~~gg 465 (787)
.+.++-- |....-|++|..|.|.+||..+. .+|.|+.|||.....
T Consensus 286 kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~ 346 (461)
T PF05694_consen 286 KVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFN 346 (461)
T ss_dssp EEEEE--EE--SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS
T ss_pred EEEECCCcccCcccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCC
Confidence 2222210 01124589999999999998887 589999999987543
No 388
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=53.41 E-value=81 Score=35.98 Aligned_cols=26 Identities=15% Similarity=0.042 Sum_probs=21.3
Q ss_pred CccccEEEEcCCccEEEEecccCCCC
Q 003907 565 NSLEHLLVYTPSGYVVQHELLPSIGM 590 (787)
Q Consensus 565 ~~~~~LlV~s~~G~l~~y~l~p~~g~ 590 (787)
....+|||+-.+-=+-.|..+|..+.
T Consensus 217 De~g~LYvgEE~~GIW~y~Aep~~~~ 242 (381)
T PF02333_consen 217 DETGRLYVGEEDVGIWRYDAEPEGGN 242 (381)
T ss_dssp TTTTEEEEEETTTEEEEEESSCCC-S
T ss_pred cccCCEEEecCccEEEEEecCCCCCC
Confidence 45678999999999999999997653
No 389
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=52.65 E-value=93 Score=31.08 Aligned_cols=30 Identities=13% Similarity=0.238 Sum_probs=25.1
Q ss_pred cEEEEEEccCC------CEEEEEeCCCeEEEEeCCC
Q 003907 433 TIQDICFSHYS------QWIAIVSSKGTCHVFVLSP 462 (787)
Q Consensus 433 ~I~slaFSpDg------~~LAs~S~dgTVhIwdl~~ 462 (787)
.|.+++|||-| -.||+-+.++.+.||.-..
T Consensus 87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 58899999955 4799999999999997553
No 390
>smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2. Unpublished observations.
Probab=51.09 E-value=2.9e+02 Score=30.28 Aligned_cols=43 Identities=9% Similarity=-0.152 Sum_probs=34.1
Q ss_pred EEEeCCCcEEEEEecCCeEEEEeCCeEEEEECCCCceeEEEEe
Q 003907 187 HVLRFRSSVCMVRCSPRIVAVGLATQIYCFDALTLENKFSVLT 229 (787)
Q Consensus 187 ~tL~f~s~V~sV~~s~~~LaV~~~~~I~iwD~~T~e~l~tl~t 229 (787)
..+.+.....++.+....|.+-.++-|.++++.++++.+++..
T Consensus 238 ~~l~w~~~p~~~~~~~pyll~~~~~~ievr~l~~~~l~q~i~~ 280 (302)
T smart00036 238 PILHWEFMPESFAYHSPYLLAFHDNGIEIRSIKTGELLQELAD 280 (302)
T ss_pred eEEEcCCcccEEEEECCEEEEEcCCcEEEEECCCCceEEEEec
Confidence 3567777788888877666666678899999999998888753
No 391
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=50.35 E-value=2e+02 Score=30.54 Aligned_cols=75 Identities=15% Similarity=0.175 Sum_probs=46.2
Q ss_pred CeEEEEECCCCCEEEEEEcCCCEEEEEe-CCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEE
Q 003907 371 PISALCFDPSGTLLVTASVYGNNINIFR-IMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIV 449 (787)
Q Consensus 371 pIsaLaFSpdG~lLATaS~dG~~IrVWd-i~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~LAs~ 449 (787)
.+..-+|+++|.+.+.... ....+++. ... +. .....+........|.++.+||||..+|..
T Consensus 67 ~l~~PS~d~~g~~W~v~~~-~~~~~~~~~~~~-------g~---------~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v 129 (253)
T PF10647_consen 67 SLTRPSWDPDGWVWTVDDG-SGGVRVVRDSAS-------GT---------GEPVEVDWPGLRGRITALRVSPDGTRVAVV 129 (253)
T ss_pred ccccccccCCCCEEEEEcC-CCceEEEEecCC-------Cc---------ceeEEecccccCCceEEEEECCCCcEEEEE
Confidence 6777899999888876665 33466663 111 10 011122111111169999999999999888
Q ss_pred e---CCCeEEEEeCCC
Q 003907 450 S---SKGTCHVFVLSP 462 (787)
Q Consensus 450 S---~dgTVhIwdl~~ 462 (787)
. .++.|.|=.|..
T Consensus 130 ~~~~~~~~v~va~V~r 145 (253)
T PF10647_consen 130 VEDGGGGRVYVAGVVR 145 (253)
T ss_pred EecCCCCeEEEEEEEe
Confidence 7 346777766653
No 392
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=49.10 E-value=2.1e+02 Score=30.75 Aligned_cols=83 Identities=12% Similarity=0.180 Sum_probs=47.3
Q ss_pred EeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEe-cccccccEEEEEEccC
Q 003907 364 QFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLH-RGITSATIQDICFSHY 442 (787)
Q Consensus 364 ~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~-rG~~~a~I~slaFSpD 442 (787)
.+.+-...++.|+|+|+...|++-..+...|-..+.. | ..+.+.. .| ....-.|++--+
T Consensus 16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~--------G----------~vlr~i~l~g--~~D~EgI~y~g~ 75 (248)
T PF06977_consen 16 PLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD--------G----------KVLRRIPLDG--FGDYEGITYLGN 75 (248)
T ss_dssp E-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT--------------------EEEEEE-SS---SSEEEEEE-ST
T ss_pred ECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCC--------C----------CEEEEEeCCC--CCCceeEEEECC
Confidence 3445456799999999866555555545555444531 3 2333332 22 235778999988
Q ss_pred CCEEEEEeCCCeEEEEeCCCCCCc
Q 003907 443 SQWIAIVSSKGTCHVFVLSPFGGD 466 (787)
Q Consensus 443 g~~LAs~S~dgTVhIwdl~~~gg~ 466 (787)
++++++.-.++++.++++...+..
T Consensus 76 ~~~vl~~Er~~~L~~~~~~~~~~~ 99 (248)
T PF06977_consen 76 GRYVLSEERDQRLYIFTIDDDTTS 99 (248)
T ss_dssp TEEEEEETTTTEEEEEEE----TT
T ss_pred CEEEEEEcCCCcEEEEEEeccccc
Confidence 887777667899999999665443
No 393
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=47.39 E-value=13 Score=45.93 Aligned_cols=120 Identities=13% Similarity=0.134 Sum_probs=63.9
Q ss_pred cCCCceEEEEECCCCcEEEEeccCCCCeEEEE-----------ECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCcc
Q 003907 345 MDNAGIVVVKDFVTRAIISQFKAHTSPISALC-----------FDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKY 413 (787)
Q Consensus 345 ~~~dG~V~IwDl~s~~~v~~~~aH~~pIsaLa-----------FSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~ 413 (787)
+..+|+|++....... ...|+.|...+..++ .||||+.||+++.||. ++.|.+--. |.
T Consensus 201 ~~~~~~i~lL~~~ra~-~~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~-v~f~Qiyi~------g~--- 269 (1283)
T KOG1916|consen 201 GLKGGEIRLLNINRAL-RSLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGS-VGFYQIYIT------GK--- 269 (1283)
T ss_pred ccCCCceeEeeechHH-HHHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCc-cceeeeeee------cc---
Confidence 4566777776554322 245566765544333 6899999999999886 788876321 10
Q ss_pred ccCCcceEEEEEecccccccEEEEEEccC-------C--CEEEEEeCC-CeEEEEeCCCCCCccccccccCCCCCC
Q 003907 414 DWNSSHVHLYKLHRGITSATIQDICFSHY-------S--QWIAIVSSK-GTCHVFVLSPFGGDSGFQTLSSQGGDP 479 (787)
Q Consensus 414 ~~~~s~~~l~~l~rG~~~a~I~slaFSpD-------g--~~LAs~S~d-gTVhIwdl~~~gg~~~~~~H~~~~~~~ 479 (787)
...+++++..-...+-.|+.+ |... | +++.++++- ..+++|.-.+..+...+....-++.+|
T Consensus 270 ---~~~rclhewkphd~~p~vC~l-c~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cll~~~~d~v~iV~p 341 (1283)
T KOG1916|consen 270 ---IVHRCLHEWKPHDKHPRVCWL-CHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCLLDKLIDGVQIVGP 341 (1283)
T ss_pred ---ccHhhhhccCCCCCCCceeee-eccccccCCccceeEEEEecccCCcceeEeeccchhhhhhhcccceEeecC
Confidence 011233332211111123333 2211 2 234555543 458999988888875444443333333
No 394
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=46.89 E-value=5.2e+02 Score=29.99 Aligned_cols=52 Identities=12% Similarity=0.248 Sum_probs=32.1
Q ss_pred CCCEEEEEECCC--Ce----------EEEEEeCCCcEEEEEec-------CCeEEE-EeCCeEEEEECCCCc
Q 003907 171 SPTAVRFYSFQS--HC----------YEHVLRFRSSVCMVRCS-------PRIVAV-GLATQIYCFDALTLE 222 (787)
Q Consensus 171 ~p~tVrlWdlkt--g~----------~v~tL~f~s~V~sV~~s-------~~~LaV-~~~~~I~iwD~~T~e 222 (787)
.|+++.||.+.. |. .+.+..|....+++.+- +..|+| +.|+++.+|+-.+.-
T Consensus 95 hP~kl~vY~v~~~~g~~~~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~ 166 (418)
T PF14727_consen 95 HPRKLSVYSVSLVDGTVEHGNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFA 166 (418)
T ss_pred cCCEEEEEEEEecCCCcccCcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEE
Confidence 368999998832 22 12222355556666542 356776 778999999966543
No 395
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=43.31 E-value=8.6e+02 Score=31.50 Aligned_cols=94 Identities=13% Similarity=0.196 Sum_probs=53.0
Q ss_pred ceEEEEECCCCcEEEEec--cCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEe
Q 003907 349 GIVVVKDFVTRAIISQFK--AHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLH 426 (787)
Q Consensus 349 G~V~IwDl~s~~~v~~~~--aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~ 426 (787)
..+++||+..+++++..+ .-...|+.+.. .+..++.+..... ++.+.-++. + .+++.+.
T Consensus 954 ~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt--~~~RI~VgD~qeS-V~~~~y~~~------~----------n~l~~fa 1014 (1205)
T KOG1898|consen 954 RFLRLYDLGKKKLLRKCELKFIPNRISSIQT--YGARIVVGDIQES-VHFVRYRRE------D----------NQLIVFA 1014 (1205)
T ss_pred cEEEEeeCChHHHHhhhhhccCceEEEEEee--cceEEEEeeccce-EEEEEEecC------C----------CeEEEEe
Confidence 467888888776655433 22445666665 4667777776554 444443331 1 2555554
Q ss_pred cccccccEEEEEEccCCCEEEEEeCCCeEEEEeCCC
Q 003907 427 RGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSP 462 (787)
Q Consensus 427 rG~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~~ 462 (787)
-...+..|+++.+=.+ .-+|.+..=|.+++-.+.+
T Consensus 1015 dD~~pR~Vt~~~~lD~-~tvagaDrfGNi~~vR~P~ 1049 (1205)
T KOG1898|consen 1015 DDPVPRHVTALELLDY-DTVAGADRFGNIAVVRIPP 1049 (1205)
T ss_pred CCCccceeeEEEEecC-CceeeccccCcEEEEECCC
Confidence 3222234666655544 4567776667777776654
No 396
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=42.24 E-value=1.3e+02 Score=21.82 Aligned_cols=23 Identities=22% Similarity=0.375 Sum_probs=18.0
Q ss_pred CCCCEEEEEEcCCCEEEEEeCCC
Q 003907 379 PSGTLLVTASVYGNNINIFRIMP 401 (787)
Q Consensus 379 pdG~lLATaS~dG~~IrVWdi~~ 401 (787)
|+|+.|..+...+..|.++|...
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~ 23 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTAT 23 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCC
Confidence 67888887777677899999843
No 397
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=42.01 E-value=4e+02 Score=34.23 Aligned_cols=60 Identities=13% Similarity=0.206 Sum_probs=40.0
Q ss_pred CEEEEEECCCCeEEEEE--eC-CCcEEEEEecCCeEEEEeCC-eE--EEEECCCCceeEEEEecCCc
Q 003907 173 TAVRFYSFQSHCYEHVL--RF-RSSVCMVRCSPRIVAVGLAT-QI--YCFDALTLENKFSVLTYPVP 233 (787)
Q Consensus 173 ~tVrlWdlktg~~v~tL--~f-~s~V~sV~~s~~~LaV~~~~-~I--~iwD~~T~e~l~tl~t~p~p 233 (787)
+.+++||+-..++.+.- ++ +..|..|.....+++||... .+ +.|+-..- .++.+...|.|
T Consensus 954 ~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt~~~RI~VgD~qeSV~~~~y~~~~n-~l~~fadD~~p 1019 (1205)
T KOG1898|consen 954 RFLRLYDLGKKKLLRKCELKFIPNRISSIQTYGARIVVGDIQESVHFVRYRREDN-QLIVFADDPVP 1019 (1205)
T ss_pred cEEEEeeCChHHHHhhhhhccCceEEEEEeecceEEEEeeccceEEEEEEecCCC-eEEEEeCCCcc
Confidence 58999999776655433 33 67899999999999998743 33 45554333 35555555543
No 398
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=40.78 E-value=11 Score=44.73 Aligned_cols=104 Identities=11% Similarity=0.117 Sum_probs=66.9
Q ss_pred cCCCceEEEEECCCCcE--EEEeccCCCCeEEEEECC-CCCEEEEEEc---CCCEEEEEeCCCCcccCCCCCCccccCCc
Q 003907 345 MDNAGIVVVKDFVTRAI--ISQFKAHTSPISALCFDP-SGTLLVTASV---YGNNINIFRIMPSCMRSGSGNHKYDWNSS 418 (787)
Q Consensus 345 ~~~dG~V~IwDl~s~~~--v~~~~aH~~pIsaLaFSp-dG~lLATaS~---dG~~IrVWdi~~~~~~~~~g~~~~~~~~s 418 (787)
|..+|.|.+-.++...- -....+|..+.++++|++ |-..||.+=+ .+..+.|||+..... .+
T Consensus 76 G~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~lt-----vP------- 143 (783)
T KOG1008|consen 76 GSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLT-----VP------- 143 (783)
T ss_pred ccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceecccccC-----CC-------
Confidence 45568888777665432 234567889999999998 4556665521 245689999854211 00
Q ss_pred ceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEeCCC
Q 003907 419 HVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSP 462 (787)
Q Consensus 419 ~~~l~~l~rG~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~~ 462 (787)
..-..|..+ +-....+++|-.|-+.|.+|.....+|+||+..
T Consensus 144 -ke~~~fs~~-~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRq 185 (783)
T KOG1008|consen 144 -KESPLFSSS-TLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQ 185 (783)
T ss_pred -ccccccccc-cccCccccccccCcchhhcccccchhhhhhhhh
Confidence 011112211 112245889999999999999999999999973
No 399
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=40.57 E-value=1.6e+02 Score=34.00 Aligned_cols=40 Identities=15% Similarity=0.346 Sum_probs=30.6
Q ss_pred EEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCC
Q 003907 361 IISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMP 401 (787)
Q Consensus 361 ~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~ 401 (787)
....|....-.+.+|+.+|+|++.|+.+.-|+ |-|+|+..
T Consensus 299 ~r~~l~D~~R~~~~i~~sP~~~laA~tDslGR-V~LiD~~~ 338 (415)
T PF14655_consen 299 MRFGLPDSKREGESICLSPSGRLAAVTDSLGR-VLLIDVAR 338 (415)
T ss_pred eEEeeccCCceEEEEEECCCCCEEEEEcCCCc-EEEEECCC
Confidence 33445555567889999999999998877676 88999864
No 400
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=40.50 E-value=10 Score=45.05 Aligned_cols=92 Identities=13% Similarity=0.216 Sum_probs=59.2
Q ss_pred CCceEEEEECCCC----cEEEEecc-CCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceE
Q 003907 347 NAGIVVVKDFVTR----AIISQFKA-HTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVH 421 (787)
Q Consensus 347 ~dG~V~IwDl~s~----~~v~~~~a-H~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~ 421 (787)
.+..+.|||+.++ +.-..|.+ -....+++|+..+-+++.+|.. -+.+++||++..+. .
T Consensus 127 nds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~-sr~~~ifdlRqs~~----------------~ 189 (783)
T KOG1008|consen 127 NDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMT-SRSVHIFDLRQSLD----------------S 189 (783)
T ss_pred ccCCccceecccccCCCccccccccccccCccccccccCcchhhcccc-cchhhhhhhhhhhh----------------h
Confidence 4567889998875 12223333 3345668899988888888777 55699999863211 0
Q ss_pred EEEEecccccccEEEEEEcc-CCCEEEEEeCCCeEEEEeC
Q 003907 422 LYKLHRGITSATIQDICFSH-YSQWIAIVSSKGTCHVFVL 460 (787)
Q Consensus 422 l~~l~rG~~~a~I~slaFSp-Dg~~LAs~S~dgTVhIwdl 460 (787)
...+ .+..++.+..+| .+.|+|+-+ ||-|-+||-
T Consensus 190 ~~sv----nTk~vqG~tVdp~~~nY~cs~~-dg~iAiwD~ 224 (783)
T KOG1008|consen 190 VSSV----NTKYVQGITVDPFSPNYFCSNS-DGDIAIWDT 224 (783)
T ss_pred hhhh----hhhhcccceecCCCCCceeccc-cCceeeccc
Confidence 0011 111255577777 667888776 899999993
No 401
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=39.42 E-value=1.9e+02 Score=33.23 Aligned_cols=29 Identities=24% Similarity=0.355 Sum_probs=23.9
Q ss_pred ccEEEEEEccCCCEEEEEeCCCeEEEEeCC
Q 003907 432 ATIQDICFSHYSQWIAIVSSKGTCHVFVLS 461 (787)
Q Consensus 432 a~I~slaFSpDg~~LAs~S~dgTVhIwdl~ 461 (787)
..|.++.|+.+. .|++...||++++|++.
T Consensus 81 ~~iv~~~wt~~e-~LvvV~~dG~v~vy~~~ 109 (410)
T PF04841_consen 81 GRIVGMGWTDDE-ELVVVQSDGTVRVYDLF 109 (410)
T ss_pred CCEEEEEECCCC-eEEEEEcCCEEEEEeCC
Confidence 569999999865 56677799999999984
No 402
>PRK10115 protease 2; Provisional
Probab=38.64 E-value=4.7e+02 Score=32.25 Aligned_cols=96 Identities=5% Similarity=-0.001 Sum_probs=50.8
Q ss_pred ceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcC-C----CEEEEEeCCCCcccCCCCCCccccCCcceEEE
Q 003907 349 GIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVY-G----NNINIFRIMPSCMRSGSGNHKYDWNSSHVHLY 423 (787)
Q Consensus 349 G~V~IwDl~s~~~v~~~~aH~~pIsaLaFSpdG~lLATaS~d-G----~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~ 423 (787)
-.++|.|+.++..+...-.+.. ..++|.+||+.|+-...+ + ..|..+++.+.. .....++
T Consensus 153 ~~l~v~d~~tg~~l~~~i~~~~--~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~lgt~~-------------~~d~lv~ 217 (686)
T PRK10115 153 YGIRFRNLETGNWYPELLDNVE--PSFVWANDSWTFYYVRKHPVTLLPYQVWRHTIGTPA-------------SQDELVY 217 (686)
T ss_pred EEEEEEECCCCCCCCccccCcc--eEEEEeeCCCEEEEEEecCCCCCCCEEEEEECCCCh-------------hHCeEEE
Confidence 4677778877653322212222 458999999866655443 2 245556663210 0113444
Q ss_pred EEecccccccEEEEEEccCCCEEEEEeCCC---eEEEEeCCC
Q 003907 424 KLHRGITSATIQDICFSHYSQWIAIVSSKG---TCHVFVLSP 462 (787)
Q Consensus 424 ~l~rG~~~a~I~slaFSpDg~~LAs~S~dg---TVhIwdl~~ 462 (787)
+-. ....-..+..+.|++++...+..+ .+.+++...
T Consensus 218 ~e~---~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~ 256 (686)
T PRK10115 218 EEK---DDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAEL 256 (686)
T ss_pred eeC---CCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcC
Confidence 421 111112444566999877666544 578888543
No 403
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=38.62 E-value=59 Score=37.83 Aligned_cols=44 Identities=20% Similarity=0.282 Sum_probs=30.7
Q ss_pred CEEEEEECCCCeEEEEEeCCCcEEEEEecC--CeEEEEeCCeEEEEE
Q 003907 173 TAVRFYSFQSHCYEHVLRFRSSVCMVRCSP--RIVAVGLATQIYCFD 217 (787)
Q Consensus 173 ~tVrlWdlktg~~v~tL~f~s~V~sV~~s~--~~LaV~~~~~I~iwD 217 (787)
..|.|||..+++.+.+++... |..|-|++ ..+|...++.|+|++
T Consensus 126 ~~i~~yDw~~~~~i~~i~v~~-vk~V~Ws~~g~~val~t~~~i~il~ 171 (443)
T PF04053_consen 126 DFICFYDWETGKLIRRIDVSA-VKYVIWSDDGELVALVTKDSIYILK 171 (443)
T ss_dssp TEEEEE-TTT--EEEEESS-E--EEEEE-TTSSEEEEE-S-SEEEEE
T ss_pred CCEEEEEhhHcceeeEEecCC-CcEEEEECCCCEEEEEeCCeEEEEE
Confidence 469999999999999998875 89999986 588888888898876
No 404
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=36.67 E-value=64 Score=39.08 Aligned_cols=79 Identities=18% Similarity=0.252 Sum_probs=56.7
Q ss_pred CCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEE
Q 003907 368 HTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIA 447 (787)
Q Consensus 368 H~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~LA 447 (787)
|...|.--+++..+++|+-|+.-|. +-+|+=.. | ..++++.. | ....+..++.|++..++|
T Consensus 32 ~~~~v~lTc~dst~~~l~~GsS~G~-lyl~~R~~-------~---------~~~~~~~~-~-~~~~~~~~~vs~~e~lvA 92 (726)
T KOG3621|consen 32 FPARVKLTCVDATEEYLAMGSSAGS-VYLYNRHT-------G---------EMRKLKNE-G-ATGITCVRSVSSVEYLVA 92 (726)
T ss_pred CcceEEEEEeecCCceEEEecccce-EEEEecCc-------h---------hhhccccc-C-ccceEEEEEecchhHhhh
Confidence 3455666788999999999998675 78887421 1 01222221 2 233577788999999999
Q ss_pred EEeCCCeEEEEeCCCCCCc
Q 003907 448 IVSSKGTCHVFVLSPFGGD 466 (787)
Q Consensus 448 s~S~dgTVhIwdl~~~gg~ 466 (787)
+|+..|-|-||-++. +.+
T Consensus 93 agt~~g~V~v~ql~~-~~p 110 (726)
T KOG3621|consen 93 AGTASGRVSVFQLNK-ELP 110 (726)
T ss_pred hhcCCceEEeehhhc-cCC
Confidence 999999999999987 444
No 405
>PRK13684 Ycf48-like protein; Provisional
Probab=36.32 E-value=1.5e+02 Score=32.94 Aligned_cols=67 Identities=18% Similarity=0.266 Sum_probs=42.8
Q ss_pred CCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEE
Q 003907 369 TSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAI 448 (787)
Q Consensus 369 ~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~LAs 448 (787)
...+.++.+.|+|.+++++.. |...+-+|- +. .......++ ....++++++.++++.+++
T Consensus 172 ~g~~~~i~~~~~g~~v~~g~~-G~i~~s~~~---------gg---------~tW~~~~~~-~~~~l~~i~~~~~g~~~~v 231 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAVSSR-GNFYSTWEP---------GQ---------TAWTPHQRN-SSRRLQSMGFQPDGNLWML 231 (334)
T ss_pred cceEEEEEECCCCeEEEEeCC-ceEEEEcCC---------CC---------CeEEEeeCC-CcccceeeeEcCCCCEEEE
Confidence 356888999999988887766 754443331 10 122222333 3346999999999997766
Q ss_pred EeCCCeEE
Q 003907 449 VSSKGTCH 456 (787)
Q Consensus 449 ~S~dgTVh 456 (787)
+ ..|.+.
T Consensus 232 g-~~G~~~ 238 (334)
T PRK13684 232 A-RGGQIR 238 (334)
T ss_pred e-cCCEEE
Confidence 5 457653
No 406
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=36.29 E-value=1.5e+02 Score=26.49 Aligned_cols=50 Identities=20% Similarity=0.196 Sum_probs=34.0
Q ss_pred CceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCC
Q 003907 348 AGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIM 400 (787)
Q Consensus 348 dG~V~IwDl~s~~~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~ 400 (787)
-|.|.-||-.+-+. ...+ -..-+.|+++|++++|..++.-++.|+||..+
T Consensus 35 ~~~Vvyyd~~~~~~--va~g-~~~aNGI~~s~~~k~lyVa~~~~~~I~vy~~~ 84 (86)
T PF01731_consen 35 WGNVVYYDGKEVKV--VASG-FSFANGIAISPDKKYLYVASSLAHSIHVYKRH 84 (86)
T ss_pred CceEEEEeCCEeEE--eecc-CCCCceEEEcCCCCEEEEEeccCCeEEEEEec
Confidence 35677777543221 1222 23346799999999999999878889999863
No 407
>PF05787 DUF839: Bacterial protein of unknown function (DUF839); InterPro: IPR008557 This family consists of bacterial proteins of unknown function.
Probab=34.89 E-value=82 Score=37.51 Aligned_cols=29 Identities=24% Similarity=0.328 Sum_probs=22.2
Q ss_pred EEEEEecccccccEEEEEEccCCCEEEEE
Q 003907 421 HLYKLHRGITSATIQDICFSHYSQWIAIV 449 (787)
Q Consensus 421 ~l~~l~rG~~~a~I~slaFSpDg~~LAs~ 449 (787)
.+..+..+...++++.++|+||++.|.+.
T Consensus 491 ~~~rf~~~P~gaE~tG~~fspDg~tlFvn 519 (524)
T PF05787_consen 491 ELKRFLVGPNGAEITGPCFSPDGRTLFVN 519 (524)
T ss_pred ceeeeccCCCCcccccceECCCCCEEEEE
Confidence 44555566667899999999999987653
No 408
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=34.81 E-value=45 Score=38.39 Aligned_cols=118 Identities=12% Similarity=0.182 Sum_probs=78.8
Q ss_pred ccCCCceEEEEECCC---CcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccC--------------
Q 003907 344 DMDNAGIVVVKDFVT---RAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRS-------------- 406 (787)
Q Consensus 344 s~~~dG~V~IwDl~s---~~~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~-------------- 406 (787)
.+..||.++.|--.. -+.+..|++|...|.+|+.+-+|.++.|.+.-++.+|+||+...-.-+
T Consensus 25 qASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lPg~a~wv 104 (558)
T KOG0882|consen 25 QASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFDMINMIKLVDLPGFAEWV 104 (558)
T ss_pred eeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeeccchhhhcccccCCCceEEe
Confidence 466789999997533 245677889999999999999999999987757789999985421000
Q ss_pred -CCCCC-----ccccCCcceEEEE---------EecccccccEEEEEEccCCCEEEEEeCCCeEEEEeCC
Q 003907 407 -GSGNH-----KYDWNSSHVHLYK---------LHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLS 461 (787)
Q Consensus 407 -~~g~~-----~~~~~~s~~~l~~---------l~rG~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~ 461 (787)
..|.+ ....+.....+++ ...+.+..+|..+-..+-+.-..+....|.|.-|...
T Consensus 105 ~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e 174 (558)
T KOG0882|consen 105 TSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAE 174 (558)
T ss_pred cCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeeccccceeEeecCC
Confidence 01100 0000000011111 1124455678899999999988888888999999887
No 409
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=34.72 E-value=1.9e+02 Score=30.71 Aligned_cols=67 Identities=12% Similarity=0.170 Sum_probs=44.2
Q ss_pred CeEEEEECCCCCEEEEEE--cCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEE
Q 003907 371 PISALCFDPSGTLLVTAS--VYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAI 448 (787)
Q Consensus 371 pIsaLaFSpdG~lLATaS--~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~LAs 448 (787)
.+.+.+.|+||+.+|... .++..+.++... + ....+..| ..+..-+|++||...+.
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~--------~-----------~~~~~~~g---~~l~~PS~d~~g~~W~v 82 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAG--------G-----------PVRPVLTG---GSLTRPSWDPDGWVWTV 82 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCC--------C-----------cceeeccC---CccccccccCCCCEEEE
Confidence 678899999999988877 656666666542 1 11111122 24777899999776666
Q ss_pred EeCCCeEEEEe
Q 003907 449 VSSKGTCHVFV 459 (787)
Q Consensus 449 ~S~dgTVhIwd 459 (787)
...+....++.
T Consensus 83 ~~~~~~~~~~~ 93 (253)
T PF10647_consen 83 DDGSGGVRVVR 93 (253)
T ss_pred EcCCCceEEEE
Confidence 66666666664
No 410
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=32.83 E-value=2.1e+02 Score=33.81 Aligned_cols=75 Identities=13% Similarity=0.189 Sum_probs=0.0
Q ss_pred CCeEEEEEecCc-EEEEEccC---CCceeEeeeeccC----------------------cEEEEEEecCCCCCCCCCCcc
Q 003907 74 FKQVLLLGYQNG-FQVLDVED---ASNFNELVSKRDG----------------------PVSFLQMQPFPVKDDGCEGFR 127 (787)
Q Consensus 74 ~~~vL~lG~~~G-~qVWdv~~---~~~~~ells~~dg----------------------~V~~v~~lP~P~~~~~~d~F~ 127 (787)
....|++++.+| +-...... .+...+..-..+. .+..+.+.+.-.
T Consensus 157 ~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 227 (547)
T PF11715_consen 157 SEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEI--------- 227 (547)
T ss_dssp SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE--------------
T ss_pred CCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEeccee---------
Q ss_pred ccCcEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEe
Q 003907 128 KLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLR 190 (787)
Q Consensus 128 ~srpLLavV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~v~tL~ 190 (787)
....+|++++.|. ++|+||+++++++.+..
T Consensus 228 ~~~~~l~tl~~D~---------------------------------~LRiW~l~t~~~~~~~~ 257 (547)
T PF11715_consen 228 NDDTFLFTLSRDH---------------------------------TLRIWSLETGQCLATID 257 (547)
T ss_dssp ETTTEEEEEETTS---------------------------------EEEEEETTTTCEEEEEE
T ss_pred CCCCEEEEEeCCC---------------------------------eEEEEECCCCeEEEEec
No 411
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=32.68 E-value=3e+02 Score=32.77 Aligned_cols=86 Identities=15% Similarity=0.255 Sum_probs=49.6
Q ss_pred CeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCcc--ccCCcceEE-----EEEecccccccEEEEEEccCC
Q 003907 371 PISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKY--DWNSSHVHL-----YKLHRGITSATIQDICFSHYS 443 (787)
Q Consensus 371 pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~--~~~~s~~~l-----~~l~rG~~~a~I~slaFSpDg 443 (787)
.|..+..|+.|..+|-++.+| |.|-.+-.. .|..++ |.++...+. -++......-.+...+|.||+
T Consensus 105 eV~~vl~s~~GS~VaL~G~~G--i~vMeLp~r-----wG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S 177 (741)
T KOG4460|consen 105 EVYQVLLSPTGSHVALIGIKG--LMVMELPKR-----WGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSS 177 (741)
T ss_pred EEEEEEecCCCceEEEecCCe--eEEEEchhh-----cCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCc
Confidence 566778889999988888877 444444110 011000 001100010 001111112257789999997
Q ss_pred ---CEEEEEeCCCeEEEEeCCCC
Q 003907 444 ---QWIAIVSSKGTCHVFVLSPF 463 (787)
Q Consensus 444 ---~~LAs~S~dgTVhIwdl~~~ 463 (787)
..|..-++|.+++||++...
T Consensus 178 ~~D~hL~iL~sdnviRiy~lS~~ 200 (741)
T KOG4460|consen 178 ILDPHLVLLTSDNVIRIYSLSEP 200 (741)
T ss_pred cCCceEEEEecCcEEEEEecCCc
Confidence 67888899999999999753
No 412
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=31.84 E-value=48 Score=35.08 Aligned_cols=56 Identities=13% Similarity=0.109 Sum_probs=43.6
Q ss_pred cCCCceEEEEECCCCcEEEEeccCC-CCeEEEEECCCCCEEEEE--EcCCCEEEEEeCCC
Q 003907 345 MDNAGIVVVKDFVTRAIISQFKAHT-SPISALCFDPSGTLLVTA--SVYGNNINIFRIMP 401 (787)
Q Consensus 345 ~~~dG~V~IwDl~s~~~v~~~~aH~-~pIsaLaFSpdG~lLATa--S~dG~~IrVWdi~~ 401 (787)
+..+|.|+.|++.-.+.+.....|+ .++..+..+..+++|+.+ |. +..++.|++.+
T Consensus 120 ~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~-d~~~k~W~ve~ 178 (238)
T KOG2444|consen 120 GAQDGRIRACNIKPNKVLGYVGQHNFESGEELIVVGSDEFLKIADTSH-DRVLKKWNVEK 178 (238)
T ss_pred eccCCceeeeccccCceeeeeccccCCCcceeEEecCCceEEeecccc-chhhhhcchhh
Confidence 4678999999999888888888888 677777777777777777 66 44578887754
No 413
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=31.73 E-value=2.4e+02 Score=29.70 Aligned_cols=44 Identities=11% Similarity=0.331 Sum_probs=32.5
Q ss_pred CCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCC
Q 003907 391 GNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSK 452 (787)
Q Consensus 391 G~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~LAs~S~d 452 (787)
|..|.+|++... + ...+..|. +-+.|..|+++.-|+||++-=.+
T Consensus 37 g~~Vev~~l~~~------~---------~~~~~~F~---Tv~~V~~l~y~~~GDYlvTlE~k 80 (215)
T PF14761_consen 37 GCKVEVYDLEQE------E---------CPLLCTFS---TVGRVLQLVYSEAGDYLVTLEEK 80 (215)
T ss_pred CCEEEEEEcccC------C---------CceeEEEc---chhheeEEEeccccceEEEEEee
Confidence 667999999631 1 14666664 34579999999999999997544
No 414
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=30.63 E-value=1.4e+02 Score=32.01 Aligned_cols=89 Identities=20% Similarity=0.159 Sum_probs=49.2
Q ss_pred EEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCC--CEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecc
Q 003907 351 VVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYG--NNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRG 428 (787)
Q Consensus 351 V~IwDl~s~~~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG--~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG 428 (787)
-.+||+.+++....-.....-.++=+|-+||++|.+++..+ +.||+|+-.. . ....+|...... +..+
T Consensus 48 s~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~---~----~~~~~w~e~~~~---m~~~ 117 (243)
T PF07250_consen 48 SVEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCT---S----DGTCDWTESPND---MQSG 117 (243)
T ss_pred EEEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCC---C----CCCCCceECccc---ccCC
Confidence 45899998875332222333445557889999999997643 4588888422 0 011122111111 1111
Q ss_pred cccccEEEEEEccCCCEEEEEeCC
Q 003907 429 ITSATIQDICFSHYSQWIAIVSSK 452 (787)
Q Consensus 429 ~~~a~I~slaFSpDg~~LAs~S~d 452 (787)
. .=-+..-=|||+.|+.|+.+
T Consensus 118 R---WYpT~~~L~DG~vlIvGG~~ 138 (243)
T PF07250_consen 118 R---WYPTATTLPDGRVLIVGGSN 138 (243)
T ss_pred C---ccccceECCCCCEEEEeCcC
Confidence 0 11223344799999999887
No 415
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=29.01 E-value=1.2e+02 Score=35.98 Aligned_cols=91 Identities=15% Similarity=0.246 Sum_probs=53.8
Q ss_pred CceEEEEECCCC--cEEEEeccCC----CCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceE
Q 003907 348 AGIVVVKDFVTR--AIISQFKAHT----SPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVH 421 (787)
Q Consensus 348 dG~V~IwDl~s~--~~v~~~~aH~----~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~ 421 (787)
+..|-=||.+-. ..+..-+.|+ ..-+|.+--.+| ++|.||.+|. ||+||-. | ++
T Consensus 403 ~n~vfriDpRv~~~~kl~~~q~kqy~~k~nFsc~aTT~sG-~IvvgS~~Gd-IRLYdri--------~----------~~ 462 (644)
T KOG2395|consen 403 DNSVFRIDPRVQGKNKLAVVQSKQYSTKNNFSCFATTESG-YIVVGSLKGD-IRLYDRI--------G----------RR 462 (644)
T ss_pred CCceEEecccccCcceeeeeeccccccccccceeeecCCc-eEEEeecCCc-EEeehhh--------h----------hh
Confidence 344555665421 1233333442 345566666666 7888999886 9999841 2 11
Q ss_pred EEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEeC
Q 003907 422 LYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVL 460 (787)
Q Consensus 422 l~~l~rG~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl 460 (787)
-.+..-|. ...|..|.-+.||+||.+.+.. ++-|-++
T Consensus 463 AKTAlPgL-G~~I~hVdvtadGKwil~Tc~t-yLlLi~t 499 (644)
T KOG2395|consen 463 AKTALPGL-GDAIKHVDVTADGKWILATCKT-YLLLIDT 499 (644)
T ss_pred hhhccccc-CCceeeEEeeccCcEEEEeccc-EEEEEEE
Confidence 12222232 2468999999999999887754 5555554
No 416
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=28.86 E-value=5.6e+02 Score=25.42 Aligned_cols=26 Identities=15% Similarity=0.353 Sum_probs=18.2
Q ss_pred EEEEEccCCCEEEEEeCCCeEEEEeCCC
Q 003907 435 QDICFSHYSQWIAIVSSKGTCHVFVLSP 462 (787)
Q Consensus 435 ~slaFSpDg~~LAs~S~dgTVhIwdl~~ 462 (787)
.+|+||.||+ ||+++. ..|||++...
T Consensus 8 ~~l~WS~Dg~-laV~t~-~~v~IL~~~~ 33 (173)
T PF12657_consen 8 NALAWSEDGQ-LAVATG-ESVHILDPQT 33 (173)
T ss_pred cCeeECCCCC-EEEEcC-CeEEEEeccC
Confidence 4699999996 455544 4688985443
No 417
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=28.63 E-value=2.5e+02 Score=29.34 Aligned_cols=74 Identities=14% Similarity=0.187 Sum_probs=43.6
Q ss_pred ECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEE----ecccccccEEEEEEccCCCEEEEEeCC
Q 003907 377 FDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKL----HRGITSATIQDICFSHYSQWIAIVSSK 452 (787)
Q Consensus 377 FSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l----~rG~~~a~I~slaFSpDg~~LAs~S~d 452 (787)
+..+|.+|+.-..+|. +.|||+..... ... ..+..++..- .. .....|.++.++.+|.-|++-++
T Consensus 18 l~~~~~~Ll~iT~~G~-l~vWnl~~~k~-------~~~-~~Si~pll~~~~~~~~-~~~~~i~~~~lt~~G~PiV~lsn- 86 (219)
T PF07569_consen 18 LECNGSYLLAITSSGL-LYVWNLKKGKA-------VLP-PVSIAPLLNSSPVSDK-SSSPNITSCSLTSNGVPIVTLSN- 86 (219)
T ss_pred EEeCCCEEEEEeCCCe-EEEEECCCCee-------ccC-CccHHHHhcccccccC-CCCCcEEEEEEcCCCCEEEEEeC-
Confidence 3456778887778675 99999965210 000 0000111100 00 12246899999999988877664
Q ss_pred CeEEEEeCC
Q 003907 453 GTCHVFVLS 461 (787)
Q Consensus 453 gTVhIwdl~ 461 (787)
|....|+.+
T Consensus 87 g~~y~y~~~ 95 (219)
T PF07569_consen 87 GDSYSYSPD 95 (219)
T ss_pred CCEEEeccc
Confidence 678888765
No 418
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=27.53 E-value=1.7e+02 Score=30.53 Aligned_cols=52 Identities=15% Similarity=0.286 Sum_probs=38.7
Q ss_pred CCCceEEEEECCCCcEEEE-------ec-------cCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeC
Q 003907 346 DNAGIVVVKDFVTRAIISQ-------FK-------AHTSPISALCFDPSGTLLVTASVYGNNINIFRI 399 (787)
Q Consensus 346 ~~dG~V~IwDl~s~~~v~~-------~~-------aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi 399 (787)
..+|.+.+||+.+++.+.. +. .....|..+.++.+|.-|++-+. |. .-.|+.
T Consensus 29 T~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~lsn-g~-~y~y~~ 94 (219)
T PF07569_consen 29 TSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLSN-GD-SYSYSP 94 (219)
T ss_pred eCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEeC-CC-EEEecc
Confidence 4689999999998764332 11 24567888889999999888876 65 577775
No 419
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=27.32 E-value=1.2e+02 Score=21.04 Aligned_cols=25 Identities=12% Similarity=0.113 Sum_probs=20.7
Q ss_pred EEEEEEccCCCEEEEEeCCCeEEEE
Q 003907 434 IQDICFSHYSQWIAIVSSKGTCHVF 458 (787)
Q Consensus 434 I~slaFSpDg~~LAs~S~dgTVhIw 458 (787)
..+|+.+++|+.+++=+....|.+|
T Consensus 4 P~gvav~~~g~i~VaD~~n~rV~vf 28 (28)
T PF01436_consen 4 PHGVAVDSDGNIYVADSGNHRVQVF 28 (28)
T ss_dssp EEEEEEETTSEEEEEECCCTEEEEE
T ss_pred CcEEEEeCCCCEEEEECCCCEEEEC
Confidence 4678899999988888888888776
No 420
>PF12341 DUF3639: Protein of unknown function (DUF3639) ; InterPro: IPR022100 This domain family is found in eukaryotes, and is approximately 30 amino acids in length. The family is found in association with PF00400 from PFAM. There are two completely conserved residues (E and R) that may be functionally important.
Probab=26.94 E-value=1.2e+02 Score=21.43 Aligned_cols=25 Identities=28% Similarity=0.635 Sum_probs=20.4
Q ss_pred cEEEEEEccCCCEEEEEeCCCeEEEEe
Q 003907 433 TIQDICFSHYSQWIAIVSSKGTCHVFV 459 (787)
Q Consensus 433 ~I~slaFSpDg~~LAs~S~dgTVhIwd 459 (787)
.|.+|+-++ +|++++++.+-++||.
T Consensus 3 ~i~aia~g~--~~vavaTS~~~lRifs 27 (27)
T PF12341_consen 3 EIEAIAAGD--SWVAVATSAGYLRIFS 27 (27)
T ss_pred eEEEEEccC--CEEEEEeCCCeEEecC
Confidence 367777775 4999999999999984
No 421
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=26.43 E-value=8.9e+02 Score=26.59 Aligned_cols=126 Identities=13% Similarity=0.073 Sum_probs=0.0
Q ss_pred CCEEEEEECCCCeEEEEEeCCCcE--EEEEecCCeEEEEeCCeEEEEECCCCceeEEEEecCCcccCCCCccccccccce
Q 003907 172 PTAVRFYSFQSHCYEHVLRFRSSV--CMVRCSPRIVAVGLATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGP 249 (787)
Q Consensus 172 p~tVrlWdlktg~~v~tL~f~s~V--~sV~~s~~~LaV~~~~~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~~~~~ 249 (787)
.+.+.--|.++|+.+.+-....+| .++-++..+++-+..+.+|+.+..|+++.+.+..... ...
T Consensus 32 s~~~~avd~~sG~~~We~ilg~RiE~sa~vvgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~--------------vk~ 97 (354)
T KOG4649|consen 32 SGIVIAVDPQSGNLIWEAILGVRIECSAIVVGDFVVLGCYSGGLYFLCVKTGSQIWNFVILET--------------VKV 97 (354)
T ss_pred CceEEEecCCCCcEEeehhhCceeeeeeEEECCEEEEEEccCcEEEEEecchhheeeeeehhh--------------hcc
Q ss_pred eEEcc--ceEEEecCCceecCcceeccccCCCCCcCCCcCCCCCceeEeeehhhhhhhhcccceeecccccccCCCCCCC
Q 003907 250 MAVGP--RWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSS 327 (787)
Q Consensus 250 lAlsp--r~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~ 327 (787)
-|.-- .-|-|.+
T Consensus 98 ~a~~d~~~glIycg------------------------------------------------------------------ 111 (354)
T KOG4649|consen 98 RAQCDFDGGLIYCG------------------------------------------------------------------ 111 (354)
T ss_pred ceEEcCCCceEEEe------------------------------------------------------------------
Q ss_pred CcccCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECC-CCCEEEEEEcCCCEEEE
Q 003907 328 PVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDP-SGTLLVTASVYGNNINI 396 (787)
Q Consensus 328 ~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~v~~~~aH~~pIsaLaFSp-dG~lLATaS~dG~~IrV 396 (787)
..||+....|..+...+...+.-.+--.+=+++| +|.+.|+.-. |..+++
T Consensus 112 ------------------shd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~sly~a~t~-G~vlav 162 (354)
T KOG4649|consen 112 ------------------SHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDGSLYAAITA-GAVLAV 162 (354)
T ss_pred ------------------cCCCcEEEecccccceEEecccCCceeccceecCCCceEEEEecc-ceEEEE
No 422
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=26.32 E-value=1e+02 Score=27.64 Aligned_cols=28 Identities=21% Similarity=0.322 Sum_probs=23.1
Q ss_pred EEEEEccCCCEEEEEeC-CCeEEEEeCCC
Q 003907 435 QDICFSHYSQWIAIVSS-KGTCHVFVLSP 462 (787)
Q Consensus 435 ~slaFSpDg~~LAs~S~-dgTVhIwdl~~ 462 (787)
..|++|||+++|.+++. +++||+|..+.
T Consensus 57 NGI~~s~~~k~lyVa~~~~~~I~vy~~~~ 85 (86)
T PF01731_consen 57 NGIAISPDKKYLYVASSLAHSIHVYKRHK 85 (86)
T ss_pred ceEEEcCCCCEEEEEeccCCeEEEEEecC
Confidence 57999999999877764 68999998753
No 423
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=26.29 E-value=1.4e+02 Score=20.66 Aligned_cols=24 Identities=21% Similarity=0.216 Sum_probs=17.6
Q ss_pred eEEEEeCCeEEEEECCCCceeEEE
Q 003907 204 IVAVGLATQIYCFDALTLENKFSV 227 (787)
Q Consensus 204 ~LaV~~~~~I~iwD~~T~e~l~tl 227 (787)
+++...++.++.+|+.+++.+++.
T Consensus 9 v~~~~~~g~l~a~d~~~G~~~W~~ 32 (33)
T smart00564 9 VYVGSTDGTLYALDAKTGEILWTY 32 (33)
T ss_pred EEEEcCCCEEEEEEcccCcEEEEc
Confidence 334445678999999999887653
No 424
>TIGR02608 delta_60_rpt delta-60 repeat domain. This domain occurs in tandem repeats, as many as 13, in proteins from Bdellovibrio bacteriovorus, Azotobacter vinelandii, Geobacter sulfurreducens, Pirellula sp. 1, Myxococcus xanthus, and others, many of which are Deltaproteobacteria. The periodicity of the repeat ranges from about 57 to 61 amino acids, and a core region of about 54 is represented by this model and seed alignment.
Probab=25.91 E-value=1.5e+02 Score=24.34 Aligned_cols=32 Identities=6% Similarity=-0.021 Sum_probs=24.8
Q ss_pred EEEEEEccCCCEEEEEeC-----CCeEEEEeCCCCCC
Q 003907 434 IQDICFSHYSQWIAIVSS-----KGTCHVFVLSPFGG 465 (787)
Q Consensus 434 I~slaFSpDg~~LAs~S~-----dgTVhIwdl~~~gg 465 (787)
.++++.-|||+.|+++.. +....|+.+++.|.
T Consensus 3 ~~~~~~q~DGkIlv~G~~~~~~~~~~~~l~Rln~DGs 39 (55)
T TIGR02608 3 AYAVAVQSDGKILVAGYVDNSSGNNDFVLARLNADGS 39 (55)
T ss_pred eEEEEECCCCcEEEEEEeecCCCcccEEEEEECCCCC
Confidence 578999999999999964 34567788877654
No 425
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=24.86 E-value=2.3e+02 Score=33.77 Aligned_cols=57 Identities=14% Similarity=0.031 Sum_probs=42.1
Q ss_pred CEEEEEECCCCeEEEEEeCCCcE--EEEEecCCeEEEEe-CCeEEEEECCCCceeEEEEe
Q 003907 173 TAVRFYSFQSHCYEHVLRFRSSV--CMVRCSPRIVAVGL-ATQIYCFDALTLENKFSVLT 229 (787)
Q Consensus 173 ~tVrlWdlktg~~v~tL~f~s~V--~sV~~s~~~LaV~~-~~~I~iwD~~T~e~l~tl~t 229 (787)
+.|.=+|+++|+.+.+.+...+. -.+.....++.++. ++.+++||+.|+|.++....
T Consensus 441 g~l~AiD~~tGk~~W~~~~~~p~~~~~l~t~g~lvf~g~~~G~l~a~D~~TGe~lw~~~~ 500 (527)
T TIGR03075 441 GSLIAWDPITGKIVWEHKEDFPLWGGVLATAGDLVFYGTLEGYFKAFDAKTGEELWKFKT 500 (527)
T ss_pred eeEEEEeCCCCceeeEecCCCCCCCcceEECCcEEEEECCCCeEEEEECCCCCEeEEEeC
Confidence 67889999999999988765432 11233445555654 67899999999999998865
No 426
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=24.36 E-value=2.9e+02 Score=30.05 Aligned_cols=57 Identities=7% Similarity=0.067 Sum_probs=37.1
Q ss_pred CCEEEEEECCCCeEEEEEeCCCcE-------EEEEecC-------CeEEEEeC--CeEEEEECCCCceeEEEE
Q 003907 172 PTAVRFYSFQSHCYEHVLRFRSSV-------CMVRCSP-------RIVAVGLA--TQIYCFDALTLENKFSVL 228 (787)
Q Consensus 172 p~tVrlWdlktg~~v~tL~f~s~V-------~sV~~s~-------~~LaV~~~--~~I~iwD~~T~e~l~tl~ 228 (787)
|-+|-.||+++++.++++.|+..+ .++++.. .++-++.. ..|.+||+.+++-...+.
T Consensus 33 ~pKLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~ 105 (287)
T PF03022_consen 33 PPKLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLH 105 (287)
T ss_dssp --EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEET
T ss_pred CcEEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEec
Confidence 348889999999999999987543 4455433 23445543 369999999997544443
No 427
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=24.19 E-value=2.1e+02 Score=25.84 Aligned_cols=45 Identities=11% Similarity=0.147 Sum_probs=30.0
Q ss_pred ccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEc
Q 003907 344 DMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASV 389 (787)
Q Consensus 344 s~~~dG~V~IwDl~s~~~v~~~~aH~~pIsaLaFSpdG~lLATaS~ 389 (787)
.+..+|.+.-||..+++.-..+.+= .--+.|++++|+.+|+.+-.
T Consensus 32 e~~~~GRll~ydp~t~~~~vl~~~L-~fpNGVals~d~~~vlv~Et 76 (89)
T PF03088_consen 32 EGRPTGRLLRYDPSTKETTVLLDGL-YFPNGVALSPDESFVLVAET 76 (89)
T ss_dssp HT---EEEEEEETTTTEEEEEEEEE-SSEEEEEE-TTSSEEEEEEG
T ss_pred cCCCCcCEEEEECCCCeEEEehhCC-CccCeEEEcCCCCEEEEEec
Confidence 4567899999999998754444432 23478999999998877654
No 428
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=23.94 E-value=1.1e+03 Score=26.98 Aligned_cols=40 Identities=10% Similarity=0.049 Sum_probs=25.4
Q ss_pred CCCEEEEEECCCCeEEEEEeCCCcEEEEEecC---CeEEEEeC
Q 003907 171 SPTAVRFYSFQSHCYEHVLRFRSSVCMVRCSP---RIVAVGLA 210 (787)
Q Consensus 171 ~p~tVrlWdlktg~~v~tL~f~s~V~sV~~s~---~~LaV~~~ 210 (787)
.++.|.--|+++|+.-..++-..-+--+.++| .+|+-|-+
T Consensus 166 p~~~i~~idl~tG~~~~v~~~~~wlgH~~fsP~dp~li~fCHE 208 (386)
T PF14583_consen 166 PHCRIFTIDLKTGERKVVFEDTDWLGHVQFSPTDPTLIMFCHE 208 (386)
T ss_dssp --EEEEEEETTT--EEEEEEESS-EEEEEEETTEEEEEEEEE-
T ss_pred CCceEEEEECCCCceeEEEecCccccCcccCCCCCCEEEEecc
Confidence 46788888999998776666666666777777 56776765
No 429
>PRK10115 protease 2; Provisional
Probab=23.43 E-value=3.7e+02 Score=33.16 Aligned_cols=72 Identities=11% Similarity=0.149 Sum_probs=42.4
Q ss_pred CCeEEEEECCCCCEEEEEEcCCC----EEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCE
Q 003907 370 SPISALCFDPSGTLLVTASVYGN----NINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQW 445 (787)
Q Consensus 370 ~pIsaLaFSpdG~lLATaS~dG~----~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~ 445 (787)
-.+..+.+||||++||-+-+.+. .|+|-|+.+ | ..+-+.-.+ .. ..++|++|++.
T Consensus 127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~t-------g----------~~l~~~i~~---~~-~~~~w~~D~~~ 185 (686)
T PRK10115 127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLET-------G----------NWYPELLDN---VE-PSFVWANDSWT 185 (686)
T ss_pred EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCC-------C----------CCCCccccC---cc-eEEEEeeCCCE
Confidence 35777899999999987754332 356666632 2 111111011 11 45999999998
Q ss_pred EEEEeCCC------eEEEEeCCC
Q 003907 446 IAIVSSKG------TCHVFVLSP 462 (787)
Q Consensus 446 LAs~S~dg------TVhIwdl~~ 462 (787)
|+.+..+. .|..+++.+
T Consensus 186 ~~y~~~~~~~~~~~~v~~h~lgt 208 (686)
T PRK10115 186 FYYVRKHPVTLLPYQVWRHTIGT 208 (686)
T ss_pred EEEEEecCCCCCCCEEEEEECCC
Confidence 87776542 345555544
No 430
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=23.24 E-value=3.8e+02 Score=33.43 Aligned_cols=96 Identities=10% Similarity=0.129 Sum_probs=0.0
Q ss_pred CCcEEEEeccC---CCCeEEEEECC-CCCEEEEEEcCCCEEEEEeC--CCCcccCCCCCCccccCCcceEEEEE-ecccc
Q 003907 358 TRAIISQFKAH---TSPISALCFDP-SGTLLVTASVYGNNINIFRI--MPSCMRSGSGNHKYDWNSSHVHLYKL-HRGIT 430 (787)
Q Consensus 358 s~~~v~~~~aH---~~pIsaLaFSp-dG~lLATaS~dG~~IrVWdi--~~~~~~~~~g~~~~~~~~s~~~l~~l-~rG~~ 430 (787)
...++..|..+ ..+...++|+| +.+.||..+.+|+ .-|||+ .. ......+.......-.+ .....
T Consensus 131 ~~~~l~~i~~~~tgg~~~aDv~FnP~~~~q~AiVD~~G~-Wsvw~i~~~~-------~~~~~~~~~~~~~~gsi~~d~~e 202 (765)
T PF10214_consen 131 DPNPLLTISSSDTGGFPHADVAFNPWDQRQFAIVDEKGN-WSVWDIKGRP-------KRKSSNLRLSRNISGSIIFDPEE 202 (765)
T ss_pred ccceeEEechhhcCCCccceEEeccCccceEEEEeccCc-EEEEEecccc-------ccCCcceeeccCCCccccCCCcc
Q ss_pred cccEEEEEEccCCCEEEEEeCCCeEEEEeCCC
Q 003907 431 SATIQDICFSHYSQWIAIVSSKGTCHVFVLSP 462 (787)
Q Consensus 431 ~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~~ 462 (787)
......|.|.++-+.|.+++... +.++|++.
T Consensus 203 ~s~w~rI~W~~~~~~lLv~~r~~-l~~~d~~~ 233 (765)
T PF10214_consen 203 LSNWKRILWVSDSNRLLVCNRSK-LMLIDFES 233 (765)
T ss_pred cCcceeeEecCCCCEEEEEcCCc-eEEEECCC
No 431
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=22.86 E-value=2.2e+02 Score=33.28 Aligned_cols=79 Identities=15% Similarity=0.302 Sum_probs=53.6
Q ss_pred CCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEE
Q 003907 369 TSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAI 448 (787)
Q Consensus 369 ~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~LAs 448 (787)
.++|.++.||+|.+.||.--. +..|..++..+.. +......+.+. .+..|...+|+.. .-+|.
T Consensus 66 ~G~I~SIkFSlDnkilAVQR~-~~~v~f~nf~~d~-------------~~l~~~~~ck~--k~~~IlGF~W~~s-~e~A~ 128 (657)
T KOG2377|consen 66 KGEIKSIKFSLDNKILAVQRT-SKTVDFCNFIPDN-------------SQLEYTQECKT--KNANILGFCWTSS-TEIAF 128 (657)
T ss_pred CCceeEEEeccCcceEEEEec-CceEEEEecCCCc-------------hhhHHHHHhcc--CcceeEEEEEecC-eeEEE
Confidence 468999999999999998877 5568888874320 00011112222 2345899999866 67888
Q ss_pred EeCCCeEEEEeCCCCCC
Q 003907 449 VSSKGTCHVFVLSPFGG 465 (787)
Q Consensus 449 ~S~dgTVhIwdl~~~gg 465 (787)
.++.| +.+|.+.+...
T Consensus 129 i~~~G-~e~y~v~pekr 144 (657)
T KOG2377|consen 129 ITDQG-IEFYQVLPEKR 144 (657)
T ss_pred EecCC-eEEEEEchhhh
Confidence 88777 78888876544
No 432
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=22.82 E-value=6.7e+02 Score=27.41 Aligned_cols=53 Identities=13% Similarity=0.135 Sum_probs=38.4
Q ss_pred ceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEE-----cCCCEEEEEeCCC
Q 003907 349 GIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTAS-----VYGNNINIFRIMP 401 (787)
Q Consensus 349 G~V~IwDl~s~~~v~~~~aH~~pIsaLaFSpdG~lLATaS-----~dG~~IrVWdi~~ 401 (787)
..|.+||..+.+...--.+-++.|++|.|..+.++++.+. .....+..||...
T Consensus 16 ~~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~ 73 (281)
T PF12768_consen 16 PGLCLYDTDNSQWSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKN 73 (281)
T ss_pred CEEEEEECCCCEeecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCC
Confidence 4578999988775554445567899999987788888775 1244577888743
No 433
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=22.51 E-value=3.5e+02 Score=24.37 Aligned_cols=17 Identities=6% Similarity=0.225 Sum_probs=12.7
Q ss_pred EEEEEEccCCCEEEEEe
Q 003907 434 IQDICFSHYSQWIAIVS 450 (787)
Q Consensus 434 I~slaFSpDg~~LAs~S 450 (787)
-..|++|+|+++|..+-
T Consensus 59 pNGVals~d~~~vlv~E 75 (89)
T PF03088_consen 59 PNGVALSPDESFVLVAE 75 (89)
T ss_dssp EEEEEE-TTSSEEEEEE
T ss_pred cCeEEEcCCCCEEEEEe
Confidence 47899999999777663
No 434
>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast). It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].
Probab=22.31 E-value=1.5e+03 Score=27.90 Aligned_cols=129 Identities=15% Similarity=0.093 Sum_probs=66.3
Q ss_pred CCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCceeE---eeeeccCcEEEEEEecCCCCCCCCCCccccCc
Q 003907 56 KDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNE---LVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHP 131 (787)
Q Consensus 56 ~~~v~wa~Fd~l~~~~~~~~~vL~lG~~~G-~qVWdv~~~~~~~e---lls~~dg~V~~v~~lP~P~~~~~~d~F~~srp 131 (787)
+++|.-++|.. .++.+.+-+.+| +|+||.++ +...+ +-..+.+.|.+=.|.++-. +.... .
T Consensus 129 ~~kvv~Ik~~~-------~~~~I~vvl~nG~i~~~d~~~-~~l~~~~~l~~~~~~~v~ys~fv~~~~-----~~~~~--~ 193 (670)
T PF10395_consen 129 DDKVVGIKFSS-------DGKIIYVVLENGSIQIYDFSE-NSLEKVPQLKLKSSINVSYSKFVNDFE-----LENGK--D 193 (670)
T ss_pred ccceEEEEEec-------CCCEEEEEEcCCcEEEEeccc-cccccccccccccccceehhhhhcccc-----cccCC--c
Confidence 57788888873 245666677777 99999933 22222 2223334344334443311 00112 2
Q ss_pred EEEEEEc-CCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEEC-CCCeEEEEEe-----CCCcE-EEEEecCC
Q 003907 132 FLLVVAG-EDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSF-QSHCYEHVLR-----FRSSV-CMVRCSPR 203 (787)
Q Consensus 132 LLavV~~-d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVrlWdl-ktg~~v~tL~-----f~s~V-~sV~~s~~ 203 (787)
++++++. .+ ..-..|++.+ ..++.+.++. ..+.- ..++.+..
T Consensus 194 ~ll~v~~~~~------------------------------~k~~ykL~~l~~~~~~~~El~s~~~e~~~~~~s~f~Y~~G 243 (670)
T PF10395_consen 194 LLLTVSQLSN------------------------------SKLSYKLISLSNESSSIFELSSTILENFGLEDSKFCYQFG 243 (670)
T ss_pred eEEEEEEcCC------------------------------CcEEEEEEEeccCCcceEEeehheeccCCcccceEEEeCC
Confidence 5555553 21 1246888888 2233333332 11111 12222233
Q ss_pred eEEEEeCCeEEEEECCCCceeEEEEe
Q 003907 204 IVAVGLATQIYCFDALTLENKFSVLT 229 (787)
Q Consensus 204 ~LaV~~~~~I~iwD~~T~e~l~tl~t 229 (787)
.|-.=.+.+|++|++.+++..+++.-
T Consensus 244 ~LY~l~~~~i~~ysip~f~~~~tI~l 269 (670)
T PF10395_consen 244 KLYQLSKKTISSYSIPNFQIQKTISL 269 (670)
T ss_pred EEEEEeCCEEEEEEcCCceEEEEEEe
Confidence 33333567899999999988787764
No 435
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.91 E-value=3.5e+02 Score=29.91 Aligned_cols=71 Identities=17% Similarity=0.172 Sum_probs=44.3
Q ss_pred EEEECCC-CCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCC
Q 003907 374 ALCFDPS-GTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSK 452 (787)
Q Consensus 374 aLaFSpd-G~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~LAs~S~d 452 (787)
.|+|+|. ..-+|-|-.-|+...|||..... ......+.+.+|.| |+ =.|||||+||.+.-+|
T Consensus 72 gi~~~p~~~ravafARrPGtf~~vfD~~~~~------~pv~~~s~~~RHfy----GH-------Gvfs~dG~~LYATEnd 134 (366)
T COG3490 72 GIAFHPALPRAVAFARRPGTFAMVFDPNGAQ------EPVTLVSQEGRHFY----GH-------GVFSPDGRLLYATEND 134 (366)
T ss_pred CeecCCCCcceEEEEecCCceEEEECCCCCc------CcEEEecccCceee----cc-------cccCCCCcEEEeecCC
Confidence 3788885 55677888889989999974310 00000001112221 21 3599999999988544
Q ss_pred -----CeEEEEeCC
Q 003907 453 -----GTCHVFVLS 461 (787)
Q Consensus 453 -----gTVhIwdl~ 461 (787)
|.|-|||..
T Consensus 135 fd~~rGViGvYd~r 148 (366)
T COG3490 135 FDPNRGVIGVYDAR 148 (366)
T ss_pred CCCCCceEEEEecc
Confidence 789999986
No 436
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=21.24 E-value=7.2e+02 Score=26.63 Aligned_cols=72 Identities=26% Similarity=0.329 Sum_probs=38.0
Q ss_pred CCCeEEEEECCC-CCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEeccccc-----ccEEEEEEccC
Q 003907 369 TSPISALCFDPS-GTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITS-----ATIQDICFSHY 442 (787)
Q Consensus 369 ~~pIsaLaFSpd-G~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~-----a~I~slaFSpD 442 (787)
...+++++|+|. |.+|+- |...+.|.++|.. |. ....+.|.+|.+. ..--.|+|.+|
T Consensus 170 ~~d~S~l~~~p~t~~lliL-S~es~~l~~~d~~--------G~--------~~~~~~L~~g~~gl~~~~~QpEGIa~d~~ 232 (248)
T PF06977_consen 170 VRDLSGLSYDPRTGHLLIL-SDESRLLLELDRQ--------GR--------VVSSLSLDRGFHGLSKDIPQPEGIAFDPD 232 (248)
T ss_dssp SS---EEEEETTTTEEEEE-ETTTTEEEEE-TT------------------EEEEEE-STTGGG-SS---SEEEEEE-TT
T ss_pred eccccceEEcCCCCeEEEE-ECCCCeEEEECCC--------CC--------EEEEEEeCCcccCcccccCCccEEEECCC
Confidence 345789999985 555555 5557778888852 31 2345667666432 13468999999
Q ss_pred CCEEEEEeCCCeEEEE
Q 003907 443 SQWIAIVSSKGTCHVF 458 (787)
Q Consensus 443 g~~LAs~S~dgTVhIw 458 (787)
|+. .++|.-+-..+|
T Consensus 233 G~L-YIvsEpNlfy~f 247 (248)
T PF06977_consen 233 GNL-YIVSEPNLFYRF 247 (248)
T ss_dssp --E-EEEETTTEEEEE
T ss_pred CCE-EEEcCCceEEEe
Confidence 965 445555544444
No 437
>COG3211 PhoX Predicted phosphatase [General function prediction only]
Probab=21.16 E-value=2.2e+02 Score=34.11 Aligned_cols=29 Identities=14% Similarity=0.258 Sum_probs=21.4
Q ss_pred EEEEEecccccccEEEEEEccCCCEEEEE
Q 003907 421 HLYKLHRGITSATIQDICFSHYSQWIAIV 449 (787)
Q Consensus 421 ~l~~l~rG~~~a~I~slaFSpDg~~LAs~ 449 (787)
.+..+.++...++++..+||||++-|.++
T Consensus 543 ~~~rf~t~P~g~E~tG~~FspD~~TlFV~ 571 (616)
T COG3211 543 TIKRFLTGPIGCEFTGPCFSPDGKTLFVN 571 (616)
T ss_pred eeeeeccCCCcceeecceeCCCCceEEEE
Confidence 45555566666789999999999866544
No 438
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=20.99 E-value=98 Score=22.88 Aligned_cols=18 Identities=17% Similarity=0.063 Sum_probs=14.0
Q ss_pred cccEEEEcCCccEEEEec
Q 003907 567 LEHLLVYTPSGYVVQHEL 584 (787)
Q Consensus 567 ~~~LlV~s~~G~l~~y~l 584 (787)
-.+|+|.+.+|+||.++.
T Consensus 21 ~g~vyv~~~dg~l~ald~ 38 (40)
T PF13570_consen 21 GGRVYVGTGDGNLYALDA 38 (40)
T ss_dssp TSEEEEE-TTSEEEEEET
T ss_pred CCEEEEEcCCCEEEEEeC
Confidence 357999999999977765
No 439
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=20.85 E-value=3.8e+02 Score=30.82 Aligned_cols=64 Identities=17% Similarity=0.201 Sum_probs=40.8
Q ss_pred eEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeC
Q 003907 372 ISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSS 451 (787)
Q Consensus 372 IsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~LAs~S~ 451 (787)
...+..++||.+++.+.. |..++-||- |. .......+. ....++++.|.+|+.+++++ .
T Consensus 241 f~~v~~~~dG~~~~vg~~-G~~~~s~d~---------G~---------~~W~~~~~~-~~~~l~~v~~~~dg~l~l~g-~ 299 (398)
T PLN00033 241 FSTVNRSPDGDYVAVSSR-GNFYLTWEP---------GQ---------PYWQPHNRA-SARRIQNMGWRADGGLWLLT-R 299 (398)
T ss_pred eeeEEEcCCCCEEEEECC-ccEEEecCC---------CC---------cceEEecCC-CccceeeeeEcCCCCEEEEe-C
Confidence 455667899998887776 876666663 31 011222222 23458999999999987666 5
Q ss_pred CCeEE
Q 003907 452 KGTCH 456 (787)
Q Consensus 452 dgTVh 456 (787)
.|.+.
T Consensus 300 ~G~l~ 304 (398)
T PLN00033 300 GGGLY 304 (398)
T ss_pred CceEE
Confidence 56643
No 440
>KOG0183 consensus 20S proteasome, regulatory subunit alpha type PSMA7/PRE6 [Posttranslational modification, protein turnover, chaperones]
Probab=20.64 E-value=61 Score=33.81 Aligned_cols=24 Identities=21% Similarity=0.213 Sum_probs=16.4
Q ss_pred cEEEEcCCccEEE--EecccCCCCCC
Q 003907 569 HLLVYTPSGYVVQ--HELLPSIGMGP 592 (787)
Q Consensus 569 ~LlV~s~~G~l~~--y~l~p~~g~~~ 592 (787)
-|-||||||||+| |..+...-|-+
T Consensus 7 altvFSPDGhL~QVEYAqEAvrkGst 32 (249)
T KOG0183|consen 7 ALTVFSPDGHLFQVEYAQEAVRKGST 32 (249)
T ss_pred ceEEECCCCCEEeeHhHHHHHhcCce
Confidence 4889999999988 44444433333
No 441
>COG2133 Glucose/sorbosone dehydrogenases [Carbohydrate transport and metabolism]
Probab=20.59 E-value=3.3e+02 Score=31.42 Aligned_cols=20 Identities=35% Similarity=0.433 Sum_probs=16.5
Q ss_pred CeEEEEECCCCCEEEEEEcC
Q 003907 371 PISALCFDPSGTLLVTASVY 390 (787)
Q Consensus 371 pIsaLaFSpdG~lLATaS~d 390 (787)
.=..|.|+|||++.+|.++.
T Consensus 178 ~g~~l~f~pDG~Lyvs~G~~ 197 (399)
T COG2133 178 FGGRLVFGPDGKLYVTTGSN 197 (399)
T ss_pred CcccEEECCCCcEEEEeCCC
Confidence 44679999999999988765
No 442
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=20.10 E-value=9e+02 Score=27.16 Aligned_cols=30 Identities=27% Similarity=0.299 Sum_probs=24.2
Q ss_pred CEEEEEECCCCeEEEEEeCCCcE---EEEEecC
Q 003907 173 TAVRFYSFQSHCYEHVLRFRSSV---CMVRCSP 202 (787)
Q Consensus 173 ~tVrlWdlktg~~v~tL~f~s~V---~sV~~s~ 202 (787)
+-|.+-|+++|+.++.|+|.+.| ++|..=|
T Consensus 282 CGv~vidl~tG~vv~~l~feg~v~EifdV~vLP 314 (335)
T TIGR03032 282 CGVAVIDLNSGDVVHWLRFEGVIEEIYDVAVLP 314 (335)
T ss_pred ccEEEEECCCCCEEEEEEeCCceeEEEEEEEec
Confidence 67999999999999999998754 5555433
Done!