Query 003907
Match_columns 787
No_of_seqs 484 out of 2308
Neff 6.3
Searched_HMMs 29240
Date Mon Mar 25 07:56:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003907.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003907hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3vu4_A KMHSV2; beta-propeller 100.0 7.2E-29 2.5E-33 269.4 39.2 241 52-463 15-272 (355)
2 3ow8_A WD repeat-containing pr 100.0 3.7E-25 1.3E-29 237.2 38.5 290 46-460 22-319 (321)
3 1vyh_C Platelet-activating fac 99.9 2E-25 6.7E-30 247.1 32.9 293 53-460 105-409 (410)
4 1got_B GT-beta; complex (GTP-b 99.9 1.9E-24 6.4E-29 232.4 36.8 254 52-473 51-312 (340)
5 4gqb_B Methylosome protein 50; 99.9 7.5E-25 2.6E-29 238.2 32.7 281 54-462 28-331 (344)
6 2ynn_A Coatomer subunit beta'; 99.9 8.9E-24 3E-28 223.6 34.8 252 52-472 9-269 (304)
7 4h5i_A Guanine nucleotide-exch 99.9 9E-24 3.1E-28 230.6 34.4 223 85-462 105-343 (365)
8 4g56_B MGC81050 protein; prote 99.9 8.2E-24 2.8E-28 230.0 32.6 285 53-466 39-347 (357)
9 2pm7_B Protein transport prote 99.9 2.3E-23 8E-28 219.6 33.4 263 52-463 5-286 (297)
10 2pbi_B Guanine nucleotide-bind 99.9 3.5E-23 1.2E-27 224.6 34.1 256 52-473 60-326 (354)
11 1nr0_A Actin interacting prote 99.9 3.2E-23 1.1E-27 241.2 34.1 336 52-464 143-569 (611)
12 1got_B GT-beta; complex (GTP-b 99.9 2.1E-22 7.3E-27 216.4 36.4 236 54-459 95-340 (340)
13 3frx_A Guanine nucleotide-bind 99.9 3E-22 1E-26 213.6 34.7 238 52-462 61-317 (319)
14 3frx_A Guanine nucleotide-bind 99.9 5.7E-22 1.9E-26 211.4 36.4 246 52-462 13-267 (319)
15 3iz6_a 40S ribosomal protein R 99.9 3.6E-22 1.2E-26 218.2 35.4 276 52-463 62-376 (380)
16 2ymu_A WD-40 repeat protein; u 99.9 2.2E-22 7.6E-27 228.7 34.6 303 53-459 259-577 (577)
17 3ow8_A WD repeat-containing pr 99.9 1.2E-22 4E-27 217.8 29.8 258 98-473 25-290 (321)
18 1erj_A Transcriptional repress 99.9 3.1E-22 1E-26 219.7 33.5 262 54-473 62-352 (393)
19 4ery_A WD repeat-containing pr 99.9 7.5E-22 2.6E-26 207.7 35.0 253 52-473 19-279 (312)
20 3k26_A Polycomb protein EED; W 99.9 7.8E-22 2.7E-26 208.7 33.3 316 52-461 14-365 (366)
21 3fm0_A Protein CIAO1; WDR39,SG 99.9 9.7E-22 3.3E-26 211.9 34.2 260 52-464 11-285 (345)
22 1erj_A Transcriptional repress 99.9 1.1E-21 3.9E-26 215.1 35.4 241 59-462 126-389 (393)
23 2pbi_B Guanine nucleotide-bind 99.9 1.8E-21 6.1E-26 211.1 35.6 235 56-459 106-354 (354)
24 1nr0_A Actin interacting prote 99.9 7.9E-22 2.7E-26 229.5 35.0 260 52-463 55-356 (611)
25 2xzm_R RACK1; ribosome, transl 99.9 1.9E-21 6.5E-26 208.9 34.9 260 52-464 17-287 (343)
26 3bg1_A Protein SEC13 homolog; 99.9 1.2E-22 4.1E-27 216.3 24.8 266 52-463 9-294 (316)
27 2ynn_A Coatomer subunit beta'; 99.9 6.1E-22 2.1E-26 209.4 29.7 217 97-474 5-229 (304)
28 4gga_A P55CDC, cell division c 99.9 3.3E-21 1.1E-25 212.8 36.8 273 75-464 116-397 (420)
29 3jrp_A Fusion protein of prote 99.9 1.3E-21 4.3E-26 208.1 31.6 263 52-463 7-288 (379)
30 1r5m_A SIR4-interacting protei 99.9 1.3E-21 4.3E-26 211.1 31.4 293 55-461 107-424 (425)
31 3mmy_A MRNA export factor; mRN 99.9 1.5E-21 5.3E-26 206.2 31.3 292 52-464 35-348 (368)
32 3zwl_B Eukaryotic translation 99.9 7E-21 2.4E-25 201.2 36.3 263 52-472 28-314 (369)
33 1vyh_C Platelet-activating fac 99.9 5.3E-22 1.8E-26 219.5 28.6 254 98-473 101-380 (410)
34 1gxr_A ESG1, transducin-like e 99.9 8E-21 2.7E-25 198.6 35.5 275 54-460 49-335 (337)
35 3f3f_A Nucleoporin SEH1; struc 99.9 4.5E-21 1.5E-25 199.5 33.3 280 52-465 7-340 (351)
36 2ymu_A WD-40 repeat protein; u 99.9 3.6E-21 1.2E-25 218.8 33.5 317 53-474 218-550 (577)
37 1sq9_A Antiviral protein SKI8; 99.9 2.9E-21 9.8E-26 208.3 30.5 289 52-462 12-395 (397)
38 3odt_A Protein DOA1; ubiquitin 99.9 1.7E-20 5.9E-25 194.4 34.4 275 52-463 14-297 (313)
39 3fm0_A Protein CIAO1; WDR39,SG 99.9 1.1E-20 3.8E-25 203.6 34.0 250 52-463 57-336 (345)
40 4aow_A Guanine nucleotide-bind 99.9 3E-20 1E-24 195.2 36.5 264 52-462 34-337 (340)
41 2hes_X YDR267CP; beta-propelle 99.9 6.5E-21 2.2E-25 204.2 31.9 244 55-462 57-328 (330)
42 4a11_B DNA excision repair pro 99.9 2.2E-20 7.6E-25 200.6 35.8 262 52-466 39-369 (408)
43 2hes_X YDR267CP; beta-propelle 99.9 1.2E-20 4.2E-25 202.0 33.6 247 52-461 10-279 (330)
44 4ery_A WD repeat-containing pr 99.9 3.8E-20 1.3E-24 194.6 36.6 241 52-461 61-311 (312)
45 4ggc_A P55CDC, cell division c 99.9 8.1E-20 2.8E-24 190.2 37.1 270 76-462 37-315 (318)
46 2xzm_R RACK1; ribosome, transl 99.9 2.2E-20 7.4E-25 200.6 32.1 239 52-462 72-340 (343)
47 2pm9_A Protein WEB1, protein t 99.9 4E-21 1.4E-25 208.2 25.5 253 54-467 65-342 (416)
48 4aez_A CDC20, WD repeat-contai 99.9 1E-19 3.6E-24 199.2 36.5 269 75-464 104-382 (401)
49 3dm0_A Maltose-binding peripla 99.9 1.3E-20 4.5E-25 221.9 30.9 280 20-464 344-634 (694)
50 3ei3_B DNA damage-binding prot 99.9 3.1E-20 1.1E-24 200.6 31.2 282 52-462 69-382 (383)
51 3i2n_A WD repeat-containing pr 99.9 1.5E-20 5E-25 198.7 27.4 307 53-463 15-354 (357)
52 2ovr_B FBW7, F-BOX/WD repeat p 99.9 1.5E-19 5.2E-24 200.1 36.8 276 52-463 155-443 (445)
53 3iz6_a 40S ribosomal protein R 99.9 4.6E-21 1.6E-25 209.4 24.0 260 87-464 49-331 (380)
54 3gre_A Serine/threonine-protei 99.9 9.5E-21 3.3E-25 208.4 26.4 252 53-473 60-370 (437)
55 3vl1_A 26S proteasome regulato 99.9 4.9E-20 1.7E-24 200.6 31.0 254 74-465 108-368 (420)
56 1p22_A F-BOX/WD-repeat protein 99.9 7.5E-20 2.6E-24 202.6 32.9 231 53-463 130-366 (435)
57 3v7d_B Cell division control p 99.9 2E-19 6.8E-24 199.4 36.2 258 52-463 117-382 (464)
58 2pm9_A Protein WEB1, protein t 99.9 2E-21 6.7E-26 210.6 19.0 263 52-462 109-414 (416)
59 3dm0_A Maltose-binding peripla 99.9 7.7E-20 2.6E-24 215.3 34.0 240 52-463 426-694 (694)
60 1k8k_C P40, ARP2/3 complex 41 99.9 9E-20 3.1E-24 194.1 30.3 240 54-462 6-274 (372)
61 2ovr_B FBW7, F-BOX/WD repeat p 99.9 5.1E-19 1.8E-23 195.9 36.5 275 52-464 114-393 (445)
62 1r5m_A SIR4-interacting protei 99.9 1.9E-19 6.6E-24 193.9 32.1 290 55-462 44-361 (425)
63 3dw8_B Serine/threonine-protei 99.9 3E-20 1E-24 203.5 26.1 259 55-472 27-382 (447)
64 2j04_B YDR362CP, TAU91; beta p 99.9 3.2E-20 1.1E-24 214.0 27.2 289 76-462 174-517 (524)
65 3sfz_A APAF-1, apoptotic pepti 99.9 1.8E-19 6.3E-24 224.3 36.2 353 53-464 696-1160(1249)
66 1pgu_A Actin interacting prote 99.9 1.2E-19 4E-24 206.5 31.1 321 54-472 201-583 (615)
67 1p22_A F-BOX/WD-repeat protein 99.9 8.1E-20 2.8E-24 202.3 28.8 241 52-463 169-415 (435)
68 3vl1_A 26S proteasome regulato 99.9 4.5E-20 1.5E-24 200.9 26.2 176 173-465 119-325 (420)
69 3sfz_A APAF-1, apoptotic pepti 99.9 7.2E-19 2.5E-23 219.0 38.6 291 53-462 612-913 (1249)
70 3dwl_C Actin-related protein 2 99.9 6.6E-21 2.3E-25 204.8 17.5 238 56-462 11-281 (377)
71 3zwl_B Eukaryotic translation 99.9 9.2E-19 3.1E-23 184.9 33.4 245 52-462 70-346 (369)
72 3mkq_A Coatomer beta'-subunit; 99.9 3E-19 1E-23 211.4 33.2 253 52-473 9-270 (814)
73 3v7d_B Cell division control p 99.8 1.3E-18 4.4E-23 192.9 35.3 239 52-463 158-422 (464)
74 1yfq_A Cell cycle arrest prote 99.8 2.2E-19 7.4E-24 189.3 26.3 256 52-472 7-292 (342)
75 4gqb_B Methylosome protein 50; 99.8 7.4E-20 2.5E-24 198.8 23.0 113 344-474 144-258 (344)
76 1pgu_A Actin interacting prote 99.8 6.6E-19 2.2E-23 200.4 31.2 249 52-471 14-292 (615)
77 4e54_B DNA damage-binding prot 99.8 2.2E-19 7.7E-24 199.3 26.1 285 54-463 117-431 (435)
78 2aq5_A Coronin-1A; WD40 repeat 99.8 3E-19 1E-23 195.1 25.9 229 77-464 49-301 (402)
79 2oaj_A Protein SNI1; WD40 repe 99.8 9.8E-19 3.4E-23 213.7 32.9 118 341-462 449-605 (902)
80 3jro_A Fusion protein of prote 99.8 3.7E-19 1.3E-23 212.7 27.3 264 52-464 5-287 (753)
81 2xyi_A Probable histone-bindin 99.8 1.4E-18 4.7E-23 192.9 29.4 242 75-462 141-410 (430)
82 3gre_A Serine/threonine-protei 99.8 1.8E-18 6.1E-23 190.2 29.2 269 54-459 109-437 (437)
83 4g56_B MGC81050 protein; prote 99.8 2.2E-19 7.7E-24 195.0 21.2 240 75-473 17-269 (357)
84 1k8k_C P40, ARP2/3 complex 41 99.8 2.2E-18 7.5E-23 183.4 28.4 276 52-462 48-361 (372)
85 2w18_A PALB2, fancn, partner a 99.8 3.3E-18 1.1E-22 186.8 30.1 185 172-460 156-355 (356)
86 3lrv_A PRE-mRNA-splicing facto 99.8 7.1E-19 2.4E-23 188.6 24.2 101 345-463 188-293 (343)
87 4a11_B DNA excision repair pro 99.8 3.7E-18 1.3E-22 183.2 29.7 224 84-465 23-279 (408)
88 2aq5_A Coronin-1A; WD40 repeat 99.8 2.3E-18 7.9E-23 188.1 28.5 248 52-463 77-343 (402)
89 2pm7_B Protein transport prote 99.8 2.2E-18 7.6E-23 181.5 27.3 207 100-462 4-238 (297)
90 2vdu_B TRNA (guanine-N(7)-)-me 99.8 4.1E-18 1.4E-22 189.7 30.9 176 173-460 125-337 (450)
91 1l0q_A Surface layer protein; 99.8 2.5E-17 8.4E-22 177.8 35.5 273 75-472 2-285 (391)
92 3ei3_B DNA damage-binding prot 99.8 7.7E-18 2.6E-22 181.8 30.8 221 96-473 64-293 (383)
93 1sq9_A Antiviral protein SKI8; 99.8 2.4E-18 8.1E-23 185.5 26.1 267 97-470 8-330 (397)
94 3i2n_A WD repeat-containing pr 99.8 2.4E-17 8.2E-22 173.9 32.8 263 97-464 10-293 (357)
95 1gxr_A ESG1, transducin-like e 99.8 3.6E-18 1.2E-22 178.4 24.9 225 74-463 20-256 (337)
96 4h5i_A Guanine nucleotide-exch 99.8 9.4E-18 3.2E-22 183.0 28.7 257 58-473 16-312 (365)
97 3dwl_C Actin-related protein 2 99.8 1.3E-19 4.6E-24 194.6 13.7 200 173-474 33-252 (377)
98 1yfq_A Cell cycle arrest prote 99.8 1.3E-17 4.4E-22 175.6 28.3 237 54-460 54-322 (342)
99 4e54_B DNA damage-binding prot 99.8 1.1E-18 3.7E-23 193.8 20.7 112 344-473 226-338 (435)
100 3bws_A Protein LP49; two-domai 99.8 1.4E-16 4.9E-21 174.2 36.8 238 55-462 168-432 (433)
101 3bg1_A Protein SEC13 homolog; 99.8 2.8E-18 9.5E-23 182.6 22.0 208 98-462 6-247 (316)
102 3jrp_A Fusion protein of prote 99.8 1.4E-17 4.9E-22 176.8 27.1 212 96-463 2-241 (379)
103 3vu4_A KMHSV2; beta-propeller 99.8 6.8E-18 2.3E-22 183.0 24.8 116 343-463 211-337 (355)
104 3odt_A Protein DOA1; ubiquitin 99.8 2.1E-17 7.3E-22 171.0 27.3 250 95-472 8-265 (313)
105 3k26_A Polycomb protein EED; W 99.8 6.1E-18 2.1E-22 178.8 23.4 225 99-465 12-263 (366)
106 2oaj_A Protein SNI1; WD40 repe 99.8 4.3E-17 1.5E-21 199.2 33.2 247 54-461 15-311 (902)
107 3mkq_A Coatomer beta'-subunit; 99.8 1.7E-16 6E-21 187.8 35.5 244 52-463 51-303 (814)
108 4gq1_A NUP37; propeller, trans 99.8 9.8E-18 3.3E-22 184.2 22.6 260 74-462 100-389 (393)
109 2j04_B YDR362CP, TAU91; beta p 99.8 4.2E-18 1.4E-22 196.3 19.1 114 342-474 280-398 (524)
110 4aow_A Guanine nucleotide-bind 99.8 2E-16 6.9E-21 166.0 30.1 213 96-469 29-253 (340)
111 3f3f_A Nucleoporin SEH1; struc 99.8 2.9E-16 1E-20 163.0 30.2 102 344-463 129-250 (351)
112 3dw8_B Serine/threonine-protei 99.7 1.1E-16 3.9E-21 175.1 25.4 103 343-462 193-315 (447)
113 2xyi_A Probable histone-bindin 99.7 2.8E-16 9.6E-21 174.3 26.0 103 344-465 249-356 (430)
114 4aez_A CDC20, WD repeat-contai 99.7 4.5E-16 1.5E-20 170.3 26.5 216 172-463 112-337 (401)
115 4gga_A P55CDC, cell division c 99.7 8.1E-16 2.8E-20 169.6 28.1 226 173-473 125-364 (420)
116 2vdu_B TRNA (guanine-N(7)-)-me 99.7 4.1E-16 1.4E-20 173.5 24.3 100 346-465 168-274 (450)
117 2hqs_A Protein TOLB; TOLB, PAL 99.7 8.6E-15 3E-19 162.6 31.5 238 75-476 144-400 (415)
118 3mmy_A MRNA export factor; mRN 99.7 1E-15 3.5E-20 161.4 22.8 259 95-472 29-314 (368)
119 2w18_A PALB2, fancn, partner a 99.7 1E-15 3.5E-20 167.2 22.9 55 344-399 300-355 (356)
120 3bws_A Protein LP49; two-domai 99.7 9.8E-15 3.3E-19 159.6 30.6 230 74-463 133-391 (433)
121 4ggc_A P55CDC, cell division c 99.7 3.8E-15 1.3E-19 154.8 25.8 225 173-473 45-284 (318)
122 4gq1_A NUP37; propeller, trans 99.7 1.3E-15 4.6E-20 167.2 23.5 224 172-472 110-358 (393)
123 3lrv_A PRE-mRNA-splicing facto 99.7 3.4E-15 1.2E-19 159.8 25.1 218 78-461 88-332 (343)
124 3jro_A Fusion protein of prote 99.7 1.7E-15 5.8E-20 181.0 25.2 210 99-464 3-240 (753)
125 1l0q_A Surface layer protein; 99.7 3.4E-14 1.2E-18 153.1 29.8 213 173-463 12-234 (391)
126 1pby_B Quinohemoprotein amine 99.7 1.3E-13 4.5E-18 144.0 33.4 279 76-464 2-312 (337)
127 2j04_A TAU60, YPL007P, hypothe 99.7 5.6E-15 1.9E-19 170.6 23.9 239 74-461 26-296 (588)
128 1nir_A Nitrite reductase; hemo 99.6 6.7E-14 2.3E-18 161.7 31.4 320 74-467 148-519 (543)
129 3u4y_A Uncharacterized protein 99.6 7E-14 2.4E-18 147.2 28.5 274 75-462 10-304 (331)
130 2j04_A TAU60, YPL007P, hypothe 99.6 3.3E-14 1.1E-18 164.2 25.3 234 56-451 85-350 (588)
131 2hqs_A Protein TOLB; TOLB, PAL 99.6 2.5E-13 8.5E-18 150.8 27.2 172 173-462 159-344 (415)
132 1ri6_A Putative isomerase YBHE 99.6 7.4E-13 2.5E-17 138.6 27.1 279 76-465 6-311 (343)
133 2ojh_A Uncharacterized protein 99.5 6E-13 2.1E-17 135.2 22.4 218 172-463 21-259 (297)
134 3vgz_A Uncharacterized protein 99.5 2E-11 7E-16 128.7 34.6 174 173-463 111-304 (353)
135 3hfq_A Uncharacterized protein 99.5 2.1E-11 7E-16 129.8 30.3 105 348-468 208-323 (347)
136 1jmx_B Amine dehydrogenase; ox 99.5 3.2E-11 1.1E-15 126.7 29.9 88 353-463 237-326 (349)
137 2ecf_A Dipeptidyl peptidase IV 99.5 2.1E-12 7.2E-17 152.0 22.5 289 56-472 36-377 (741)
138 3scy_A Hypothetical bacterial 99.5 1.8E-11 6E-16 131.3 27.4 106 347-468 231-343 (361)
139 2z3z_A Dipeptidyl aminopeptida 99.4 5.2E-12 1.8E-16 147.9 22.3 222 173-465 101-345 (706)
140 1xfd_A DIP, dipeptidyl aminope 99.4 3.2E-12 1.1E-16 149.7 20.1 279 74-461 27-341 (723)
141 2ojh_A Uncharacterized protein 99.4 1.5E-11 5E-16 124.9 22.2 233 56-453 41-293 (297)
142 2oit_A Nucleoporin 214KDA; NH2 99.4 2.1E-11 7.2E-16 136.7 23.0 103 344-465 167-281 (434)
143 3u4y_A Uncharacterized protein 99.4 2.5E-10 8.7E-15 119.8 29.1 180 173-464 20-209 (331)
144 2ecf_A Dipeptidyl peptidase IV 99.4 2.2E-11 7.5E-16 143.3 22.7 99 347-465 310-416 (741)
145 3vgz_A Uncharacterized protein 99.4 5E-10 1.7E-14 118.0 30.8 221 74-453 99-335 (353)
146 3o4h_A Acylamino-acid-releasin 99.3 3.5E-11 1.2E-15 138.2 20.2 91 349-460 175-274 (582)
147 1k32_A Tricorn protease; prote 99.3 1.1E-10 3.8E-15 144.1 26.1 261 76-461 215-501 (1045)
148 1jof_A Carboxy-CIS,CIS-muconat 99.3 2.3E-10 8E-15 123.7 25.5 78 371-463 255-342 (365)
149 3hfq_A Uncharacterized protein 99.3 1.1E-09 3.8E-14 116.3 29.5 103 347-462 160-271 (347)
150 3scy_A Hypothetical bacterial 99.3 1.8E-09 6.1E-14 115.6 31.3 104 347-465 175-294 (361)
151 1nir_A Nitrite reductase; hemo 99.3 1.6E-10 5.6E-15 133.3 22.1 181 173-463 159-356 (543)
152 1k32_A Tricorn protease; prote 99.3 1E-10 3.6E-15 144.4 21.4 268 86-472 185-470 (1045)
153 2z3z_A Dipeptidyl aminopeptida 99.3 9.2E-10 3.1E-14 128.9 28.2 96 347-463 331-436 (706)
154 1ri6_A Putative isomerase YBHE 99.3 5.3E-10 1.8E-14 116.8 23.4 103 347-465 104-212 (343)
155 1xfd_A DIP, dipeptidyl aminope 99.3 1.6E-10 5.4E-15 135.4 20.8 103 347-465 278-396 (723)
156 1pby_B Quinohemoprotein amine 99.2 7.6E-10 2.6E-14 115.3 23.2 217 173-462 11-269 (337)
157 1z68_A Fibroblast activation p 99.2 3.8E-11 1.3E-15 141.1 14.5 285 75-465 27-347 (719)
158 1jof_A Carboxy-CIS,CIS-muconat 99.2 3.4E-09 1.2E-13 114.6 27.3 102 348-462 166-291 (365)
159 3pe7_A Oligogalacturonate lyas 99.2 3.2E-09 1.1E-13 114.0 24.7 96 349-462 264-382 (388)
160 2oit_A Nucleoporin 214KDA; NH2 99.2 6.4E-11 2.2E-15 132.7 10.5 98 344-461 113-222 (434)
161 3o4h_A Acylamino-acid-releasin 99.1 5.3E-10 1.8E-14 128.3 17.8 90 351-463 134-228 (582)
162 1jmx_B Amine dehydrogenase; ox 99.1 5.8E-09 2E-13 109.4 23.8 57 173-229 21-83 (349)
163 1q7f_A NHL, brain tumor CG1071 99.1 4.9E-07 1.7E-11 93.2 34.2 95 348-462 184-280 (286)
164 4a5s_A Dipeptidyl peptidase 4 99.1 1.7E-09 5.7E-14 128.6 17.7 111 74-223 27-144 (740)
165 1z68_A Fibroblast activation p 99.0 1.2E-09 4.1E-14 128.3 13.7 51 173-223 36-102 (719)
166 2oiz_A Aromatic amine dehydrog 98.9 4E-07 1.4E-11 99.0 28.7 96 346-463 218-335 (361)
167 4a5s_A Dipeptidyl peptidase 4 98.9 3.9E-08 1.3E-12 116.8 20.8 76 173-262 36-131 (740)
168 3dsm_A Uncharacterized protein 98.9 1.2E-06 4.3E-11 93.5 28.5 231 75-461 54-301 (328)
169 3azo_A Aminopeptidase; POP fam 98.8 1.6E-07 5.5E-12 109.0 22.3 99 349-465 217-326 (662)
170 3pe7_A Oligogalacturonate lyas 98.8 2.4E-07 8.2E-12 99.3 21.5 98 346-462 165-273 (388)
171 3c5m_A Oligogalacturonate lyas 98.8 9.7E-08 3.3E-12 102.1 18.3 101 349-470 264-390 (396)
172 2gop_A Trilobed protease; beta 98.8 1.6E-06 5.6E-11 91.4 26.9 96 348-473 243-340 (347)
173 3fvz_A Peptidyl-glycine alpha- 98.8 2.6E-06 8.8E-11 90.8 27.8 98 347-462 216-322 (329)
174 3dsm_A Uncharacterized protein 98.7 9E-06 3.1E-10 86.8 30.8 178 173-462 64-253 (328)
175 3c5m_A Oligogalacturonate lyas 98.7 1.9E-06 6.4E-11 92.0 24.8 91 349-462 216-329 (396)
176 2dg1_A DRP35, lactonase; beta 98.7 2.8E-05 9.6E-10 81.7 32.4 106 74-222 55-173 (333)
177 2gop_A Trilobed protease; beta 98.7 2E-06 6.9E-11 90.7 23.3 82 350-461 201-290 (347)
178 3e5z_A Putative gluconolactona 98.7 7.3E-06 2.5E-10 85.1 27.2 88 348-462 192-284 (296)
179 1xip_A Nucleoporin NUP159; bet 98.6 4.4E-06 1.5E-10 92.7 25.2 80 346-449 143-231 (388)
180 2xdw_A Prolyl endopeptidase; a 98.6 2.8E-05 9.5E-10 91.7 30.8 97 348-463 310-415 (710)
181 1qks_A Cytochrome CD1 nitrite 98.6 1.8E-05 6.3E-10 91.9 28.6 181 173-463 177-374 (567)
182 3azo_A Aminopeptidase; POP fam 98.6 2E-06 6.9E-11 99.7 20.5 97 350-466 266-371 (662)
183 3no2_A Uncharacterized protein 98.6 4.9E-05 1.7E-09 79.7 29.2 230 74-464 4-253 (276)
184 1q7f_A NHL, brain tumor CG1071 98.5 2.6E-05 9E-10 80.1 24.8 93 348-460 141-236 (286)
185 1pjx_A Dfpase, DIISOPROPYLFLUO 98.5 9.8E-05 3.3E-09 76.4 29.1 97 348-464 197-301 (314)
186 1qks_A Cytochrome CD1 nitrite 98.5 0.00015 5E-09 84.3 33.3 233 76-462 168-421 (567)
187 3no2_A Uncharacterized protein 98.4 1.9E-05 6.6E-10 82.8 21.0 171 173-462 15-195 (276)
188 2dg1_A DRP35, lactonase; beta 98.4 0.00021 7.1E-09 74.9 28.3 99 349-461 162-262 (333)
189 2oiz_A Aromatic amine dehydrog 98.4 6.4E-05 2.2E-09 81.6 24.4 58 172-230 30-100 (361)
190 2mad_H Methylamine dehydrogena 98.3 0.00018 6.1E-09 78.9 27.2 98 347-464 232-352 (373)
191 2xdw_A Prolyl endopeptidase; a 98.3 3.9E-05 1.3E-09 90.4 23.4 99 348-462 258-366 (710)
192 3fvz_A Peptidyl-glycine alpha- 98.3 0.00024 8.1E-09 75.5 27.0 53 347-400 266-321 (329)
193 1rwi_B Serine/threonine-protei 98.3 0.00012 4E-09 74.2 23.4 96 348-463 170-265 (270)
194 2bkl_A Prolyl endopeptidase; m 98.2 1.5E-05 5.2E-10 93.8 17.9 97 347-462 293-397 (695)
195 3e5z_A Putative gluconolactona 98.2 0.00088 3E-08 69.2 28.1 92 349-461 153-245 (296)
196 3sjl_D Methylamine dehydrogena 98.2 0.00081 2.8E-08 74.4 28.4 99 346-464 244-365 (386)
197 3c75_H MADH, methylamine dehyd 98.1 0.00072 2.5E-08 75.8 26.9 57 173-229 149-218 (426)
198 1yr2_A Prolyl oligopeptidase; 98.1 0.0003 1E-08 83.5 24.9 96 348-462 340-441 (741)
199 2z2n_A Virginiamycin B lyase; 98.1 0.011 3.8E-07 59.8 33.3 92 348-460 161-253 (299)
200 2ece_A 462AA long hypothetical 98.1 0.00067 2.3E-08 76.4 25.4 84 371-469 322-431 (462)
201 3g4e_A Regucalcin; six bladed 98.1 0.0033 1.1E-07 65.5 29.4 69 364-452 193-262 (297)
202 2ghs_A AGR_C_1268P; regucalcin 98.0 0.0091 3.1E-07 63.3 32.0 68 365-453 225-293 (326)
203 3hrp_A Uncharacterized protein 98.0 0.0029 1E-07 69.9 28.9 73 371-461 324-409 (409)
204 1xip_A Nucleoporin NUP159; bet 98.0 9.6E-05 3.3E-09 81.9 15.8 89 347-463 104-192 (388)
205 1mda_H Methylamine dehydrogena 97.9 0.00078 2.7E-08 74.0 21.4 54 174-229 47-114 (368)
206 2qe8_A Uncharacterized protein 97.8 0.0011 3.9E-08 70.8 21.2 56 173-228 93-162 (343)
207 1yr2_A Prolyl oligopeptidase; 97.8 0.0021 7.3E-08 76.1 25.2 99 348-465 293-396 (741)
208 3g4e_A Regucalcin; six bladed 97.8 0.0054 1.8E-07 63.9 25.0 50 173-223 35-85 (297)
209 1kb0_A Quinohemoprotein alcoho 97.7 0.0066 2.3E-07 71.7 26.7 58 173-230 138-209 (677)
210 3iuj_A Prolyl endopeptidase; h 97.7 0.014 4.8E-07 68.7 28.5 94 348-462 304-405 (693)
211 2bkl_A Prolyl endopeptidase; m 97.6 0.0013 4.4E-08 77.4 19.5 94 348-463 201-305 (695)
212 2z2n_A Virginiamycin B lyase; 97.6 0.087 3E-06 53.1 33.1 92 348-462 203-295 (299)
213 1rwi_B Serine/threonine-protei 97.5 0.0026 8.8E-08 64.1 16.8 93 349-461 129-221 (270)
214 2ece_A 462AA long hypothetical 97.5 0.009 3.1E-07 67.3 22.6 99 347-462 162-289 (462)
215 2hz6_A Endoplasmic reticulum t 97.5 5.7E-05 1.9E-09 82.4 4.0 91 346-462 99-192 (369)
216 2iwa_A Glutamine cyclotransfer 97.5 0.032 1.1E-06 58.5 24.9 174 173-463 44-238 (266)
217 2qc5_A Streptogramin B lactona 97.4 0.14 4.7E-06 51.6 33.0 91 349-460 167-258 (300)
218 3hrp_A Uncharacterized protein 97.4 0.028 9.5E-07 62.0 24.5 94 348-461 239-353 (409)
219 2ghs_A AGR_C_1268P; regucalcin 97.4 0.054 1.9E-06 57.2 25.8 97 349-460 161-258 (326)
220 3sjl_D Methylamine dehydrogena 97.3 0.00073 2.5E-08 74.8 11.1 98 348-464 58-171 (386)
221 1pjx_A Dfpase, DIISOPROPYLFLUO 97.3 0.029 9.8E-07 57.6 22.2 100 348-461 152-255 (314)
222 3dr2_A Exported gluconolactona 97.3 0.044 1.5E-06 57.0 23.7 63 371-457 240-302 (305)
223 3nol_A Glutamine cyclotransfer 97.3 0.038 1.3E-06 57.8 22.7 57 173-229 65-125 (262)
224 3nok_A Glutaminyl cyclase; bet 97.2 0.032 1.1E-06 58.5 21.4 56 173-229 75-134 (268)
225 2qc5_A Streptogramin B lactona 97.2 0.23 8E-06 49.9 30.6 89 349-460 209-298 (300)
226 3c75_H MADH, methylamine dehyd 97.2 0.0055 1.9E-07 68.7 16.3 56 173-229 99-167 (426)
227 2mad_H Methylamine dehydrogena 97.1 0.0039 1.3E-07 68.2 14.2 93 350-462 48-156 (373)
228 1yiq_A Quinohemoprotein alcoho 97.1 0.068 2.3E-06 63.2 25.0 58 173-230 131-202 (689)
229 3mbr_X Glutamine cyclotransfer 97.0 0.11 3.8E-06 53.7 23.2 57 173-229 43-103 (243)
230 3q7m_A Lipoprotein YFGL, BAMB; 97.0 0.2 7E-06 53.2 25.8 57 173-229 153-216 (376)
231 1mda_H Methylamine dehydrogena 97.0 0.002 6.8E-08 70.8 10.1 94 350-462 47-158 (368)
232 1fwx_A Nitrous oxide reductase 96.9 0.028 9.6E-07 65.3 19.1 218 173-462 112-361 (595)
233 2qe8_A Uncharacterized protein 96.9 0.061 2.1E-06 57.1 20.2 79 371-460 196-276 (343)
234 3q7m_A Lipoprotein YFGL, BAMB; 96.7 0.77 2.6E-05 48.6 32.9 93 345-462 245-337 (376)
235 3dr2_A Exported gluconolactona 96.7 0.71 2.4E-05 47.7 26.3 92 349-460 169-265 (305)
236 1kb0_A Quinohemoprotein alcoho 96.6 0.095 3.2E-06 61.8 20.8 58 173-230 87-157 (677)
237 3hxj_A Pyrrolo-quinoline quino 96.5 0.15 5.3E-06 52.4 19.9 91 349-463 235-325 (330)
238 2iwa_A Glutamine cyclotransfer 96.5 0.39 1.3E-05 50.2 22.5 95 347-463 84-182 (266)
239 3nol_A Glutamine cyclotransfer 96.4 0.65 2.2E-05 48.5 23.6 57 173-229 107-164 (262)
240 3nok_A Glutaminyl cyclase; bet 96.4 0.31 1.1E-05 51.1 20.8 57 173-229 116-173 (268)
241 1yiq_A Quinohemoprotein alcoho 96.3 0.18 6E-06 59.7 21.1 57 173-229 80-149 (689)
242 1kv9_A Type II quinohemoprotei 96.0 1.9 6.6E-05 50.5 27.7 58 173-230 127-197 (668)
243 3iuj_A Prolyl endopeptidase; h 95.9 0.037 1.3E-06 65.0 12.7 117 331-464 136-270 (693)
244 1kv9_A Type II quinohemoprotei 95.9 0.46 1.6E-05 55.8 21.6 57 173-229 76-145 (668)
245 2hz6_A Endoplasmic reticulum t 95.8 0.0025 8.7E-08 69.2 2.0 92 347-463 57-150 (369)
246 2ad6_A Methanol dehydrogenase 95.8 0.54 1.9E-05 54.2 21.6 25 438-462 470-494 (571)
247 3amr_A 3-phytase; beta-propell 95.7 1.5 5.3E-05 47.6 23.0 100 348-461 152-262 (355)
248 1fwx_A Nitrous oxide reductase 95.6 0.23 7.7E-06 57.7 16.8 98 345-451 295-407 (595)
249 3mbr_X Glutamine cyclotransfer 95.1 3.7 0.00013 42.3 26.7 57 173-229 85-142 (243)
250 1npe_A Nidogen, entactin; glyc 94.3 4.9 0.00017 40.3 33.2 71 370-462 167-238 (267)
251 1flg_A Protein (quinoprotein e 94.1 1.1 3.9E-05 51.7 17.9 85 347-451 464-549 (582)
252 2xe4_A Oligopeptidase B; hydro 93.6 0.29 9.8E-06 58.3 11.7 96 349-463 201-305 (751)
253 1bpo_A Protein (clathrin); cla 93.5 12 0.00041 42.0 27.4 48 173-220 86-134 (494)
254 2xzh_A Clathrin heavy chain 1; 93.2 11 0.00039 40.7 29.0 48 173-220 87-135 (365)
255 2ad6_A Methanol dehydrogenase 92.9 7.7 0.00026 44.5 22.0 58 173-230 125-195 (571)
256 1w6s_A Methanol dehydrogenase 92.8 5.6 0.00019 46.1 20.8 59 172-230 181-297 (599)
257 1ijq_A LDL receptor, low-densi 92.5 12 0.0004 39.1 27.5 95 348-461 98-194 (316)
258 3hxj_A Pyrrolo-quinoline quino 92.3 3.3 0.00011 42.2 16.3 88 349-460 195-282 (330)
259 1k3i_A Galactose oxidase precu 91.7 4.7 0.00016 46.7 18.5 49 174-222 266-325 (656)
260 1flg_A Protein (quinoprotein e 90.8 24 0.00081 40.5 23.0 56 174-229 79-145 (582)
261 2fp8_A Strictosidine synthase; 90.0 19 0.00066 37.0 26.5 72 372-462 231-313 (322)
262 3amr_A 3-phytase; beta-propell 89.4 6.4 0.00022 42.8 15.5 98 346-462 47-162 (355)
263 1npe_A Nidogen, entactin; glyc 88.1 8.8 0.0003 38.3 14.9 95 348-461 57-154 (267)
264 3v65_B Low-density lipoprotein 87.2 35 0.0012 36.6 23.3 50 173-222 96-149 (386)
265 3pbp_A Nucleoporin NUP82; beta 87.2 4.2 0.00014 45.5 12.4 109 347-462 39-158 (452)
266 3ei3_A DNA damage-binding prot 87.2 22 0.00077 44.4 20.5 95 349-462 904-999 (1158)
267 1w6s_A Methanol dehydrogenase 87.1 36 0.0012 39.3 21.0 57 173-229 73-149 (599)
268 3tc9_A Hypothetical hydrolase; 86.9 16 0.00056 40.0 17.3 71 372-462 228-301 (430)
269 2xe4_A Oligopeptidase B; hydro 86.8 5.1 0.00017 47.5 13.9 30 371-400 272-303 (751)
270 3v64_C Agrin; beta propeller, 85.8 39 0.0013 35.7 24.0 93 349-461 138-233 (349)
271 1xi4_A Clathrin heavy chain; a 85.1 28 0.00094 44.6 19.3 48 173-220 86-134 (1630)
272 3p5b_L Low density lipoprotein 84.5 48 0.0017 35.8 25.8 95 349-462 181-277 (400)
273 2p4o_A Hypothetical protein; p 84.5 6.7 0.00023 40.4 12.0 79 359-460 22-102 (306)
274 3ei3_A DNA damage-binding prot 84.3 93 0.0032 38.9 35.4 91 350-462 493-591 (1158)
275 2xzh_A Clathrin heavy chain 1; 84.1 23 0.0008 38.3 15.9 107 348-473 86-199 (365)
276 3tc9_A Hypothetical hydrolase; 84.1 47 0.0016 36.3 19.3 52 348-399 247-299 (430)
277 1bpo_A Protein (clathrin); cla 83.9 23 0.00079 39.8 16.2 107 348-473 85-198 (494)
278 3pbp_A Nucleoporin NUP82; beta 79.4 84 0.0029 35.0 20.2 77 368-463 123-211 (452)
279 2fp8_A Strictosidine synthase; 79.2 18 0.00062 37.2 13.0 86 347-451 163-248 (322)
280 2p9w_A MAL S 1 allergenic prot 78.0 9.5 0.00032 41.1 10.4 98 347-461 98-214 (334)
281 1n7d_A LDL receptor, low-densi 77.7 20 0.00069 42.1 14.2 49 172-220 385-437 (699)
282 3kya_A Putative phosphatase; s 77.6 75 0.0026 35.9 18.2 29 371-399 311-339 (496)
283 3m0c_C LDL receptor, low-densi 77.1 1.3E+02 0.0044 35.9 25.2 95 348-461 492-588 (791)
284 4a2l_A BT_4663, two-component 76.7 1.2E+02 0.0042 35.4 35.0 95 347-462 375-480 (795)
285 1k3i_A Galactose oxidase precu 76.2 5.5 0.00019 46.2 8.6 94 350-462 220-323 (656)
286 3sov_A LRP-6, low-density lipo 76.0 79 0.0027 32.9 23.6 94 349-461 101-196 (318)
287 3sre_A PON1, serum paraoxonase 75.2 9.8 0.00034 41.2 9.7 97 348-464 138-254 (355)
288 4hw6_A Hypothetical protein, I 75.2 73 0.0025 34.9 17.1 73 372-463 230-305 (433)
289 4a2l_A BT_4663, two-component 73.2 1.5E+02 0.005 34.7 30.9 70 369-461 542-613 (795)
290 3qqz_A Putative uncharacterize 71.3 34 0.0012 35.1 12.2 82 364-465 21-103 (255)
291 2p4o_A Hypothetical protein; p 70.7 59 0.002 33.1 14.2 95 347-461 51-146 (306)
292 3v65_B Low-density lipoprotein 65.1 1.5E+02 0.0051 31.6 28.7 71 370-460 246-316 (386)
293 4hw6_A Hypothetical protein, I 63.7 1.7E+02 0.0058 31.8 23.1 99 348-459 249-371 (433)
294 3zwu_A Alkaline phosphatase PH 61.7 21 0.00071 41.4 9.2 29 421-449 520-548 (592)
295 3qqz_A Putative uncharacterize 61.4 1.5E+02 0.005 30.3 28.6 73 370-459 173-250 (255)
296 2p9w_A MAL S 1 allergenic prot 49.5 1.3E+02 0.0045 32.2 12.3 105 347-465 33-169 (334)
297 3s94_A LRP-6, low-density lipo 47.6 3.7E+02 0.013 30.8 19.7 175 173-461 18-201 (619)
298 1xi4_A Clathrin heavy chain; a 47.2 93 0.0032 39.9 12.0 106 348-473 85-198 (1630)
299 3a9g_A Putative uncharacterize 45.9 90 0.0031 33.0 10.5 94 346-451 46-154 (354)
300 2xbg_A YCF48-like protein; pho 45.8 1.5E+02 0.0052 30.5 12.1 72 367-459 160-231 (327)
301 3sov_A LRP-6, low-density lipo 44.9 2.8E+02 0.0096 28.6 31.3 72 371-462 167-238 (318)
302 3sre_A PON1, serum paraoxonase 44.5 60 0.0021 34.9 8.8 63 371-450 222-285 (355)
303 2vpj_A Kelch-like protein 12; 43.5 2.6E+02 0.0088 27.8 17.5 50 173-222 78-139 (301)
304 3v9f_A Two-component system se 42.6 4.5E+02 0.015 30.4 37.7 92 348-462 382-478 (781)
305 2ism_A Putative oxidoreductase 42.1 97 0.0033 32.6 10.0 90 347-451 49-154 (352)
306 1ijq_A LDL receptor, low-densi 41.5 3E+02 0.01 28.0 32.8 75 370-462 164-238 (316)
307 1cru_A Protein (soluble quinop 40.4 1.2E+02 0.004 33.6 10.6 64 371-450 28-98 (454)
308 4a9v_A PHOX; hydrolase, beta-p 37.8 1E+02 0.0034 35.6 9.6 61 372-449 478-548 (592)
309 2wg3_C Hedgehog-interacting pr 35.0 3.6E+02 0.012 29.7 13.6 101 346-453 33-160 (463)
310 1n7d_A LDL receptor, low-densi 34.2 49 0.0017 38.8 6.5 96 347-461 473-570 (699)
311 3kya_A Putative phosphatase; s 33.6 1.6E+02 0.0053 33.3 10.3 65 371-453 140-214 (496)
312 3m0c_C LDL receptor, low-densi 33.6 6.7E+02 0.023 29.7 33.6 30 370-399 558-587 (791)
313 4a0p_A LRP6, LRP-6, low-densit 33.2 6E+02 0.021 29.0 25.2 180 130-461 6-196 (628)
314 2ism_A Putative oxidoreductase 31.9 1.6E+02 0.0056 30.8 9.8 70 371-461 32-113 (352)
315 3p5b_L Low density lipoprotein 30.3 5.2E+02 0.018 27.4 33.1 73 370-461 246-319 (400)
316 3v9f_A Two-component system se 28.5 7.3E+02 0.025 28.6 32.1 92 349-461 469-567 (781)
317 3v64_C Agrin; beta propeller, 28.3 5.2E+02 0.018 26.8 31.1 69 371-459 204-272 (349)
318 2xbg_A YCF48-like protein; pho 27.7 1.2E+02 0.0042 31.2 7.8 60 372-452 124-183 (327)
319 1zgk_A Kelch-like ECH-associat 26.7 4.9E+02 0.017 25.9 14.6 180 173-462 39-240 (308)
320 3das_A Putative oxidoreductase 26.5 3.6E+02 0.012 28.7 11.2 29 370-399 32-60 (347)
321 3a9g_A Putative uncharacterize 25.7 2.5E+02 0.0085 29.5 9.8 70 371-461 30-113 (354)
322 3q6k_A 43.2 kDa salivary prote 25.2 6.7E+02 0.023 27.0 13.3 109 348-461 122-252 (381)
323 1tl2_A L10, protein (tachylect 25.0 1.2E+02 0.004 31.0 6.5 78 371-465 42-119 (236)
324 3ii7_A Kelch-like protein 7; p 23.9 5.3E+02 0.018 25.5 18.0 50 173-222 70-129 (306)
325 2vpj_A Kelch-like protein 12; 21.4 5.9E+02 0.02 25.0 17.7 50 173-222 31-89 (301)
326 4gq2_M Nucleoporin NUP120; bet 20.6 3.3E+02 0.011 33.1 10.6 32 433-464 237-268 (950)
327 4gq2_M Nucleoporin NUP120; bet 20.3 4.8E+02 0.016 31.6 11.9 30 371-401 237-266 (950)
No 1
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.97 E-value=7.2e-29 Score=269.43 Aligned_cols=241 Identities=20% Similarity=0.245 Sum_probs=190.4
Q ss_pred CCCCCCcEEEEEEeeccCCCCCCCeEEEEEecCcEEEEEccCCCceeEeeeeccCcEEEEEEecCCCCCCCCCCccccCc
Q 003907 52 SEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNGFQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHP 131 (787)
Q Consensus 52 ~~~~~~~v~wa~Fd~l~~~~~~~~~vL~lG~~~G~qVWdv~~~~~~~ells~~dg~V~~v~~lP~P~~~~~~d~F~~srp 131 (787)
...|++.|..+.|+. ++++|++|..+|++|||+++ ...+...+.+.+..+.+++. .+
T Consensus 15 ~~~h~~~V~~v~fs~-------dg~~la~g~~~~~~iw~~~~---~~~~~~~~~~~~~~~~~~~~-----------~~-- 71 (355)
T 3vu4_A 15 ENHVSNPVTDYEFNQ-------DQSCLILSTLKSFEIYNVHP---VAHIMSQEMRHLSKVRMLHR-----------TN-- 71 (355)
T ss_dssp ----CCCCCEEEECT-------TSSEEEEECSSEEEEEEETT---EEEEEEEECSCCCEEEECTT-----------SS--
T ss_pred cccCCCceEEEEECC-------CCCEEEEEcCCEEEEEecCC---cceeeeeecCCeEEEEEcCC-----------CC--
Confidence 366889999999974 47899999999999999865 34445555556888888843 33
Q ss_pred EEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCCcEEEEEecCCeEEEEeCC
Q 003907 132 FLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRSSVCMVRCSPRIVAVGLAT 211 (787)
Q Consensus 132 LLavV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~v~tL~f~s~V~sV~~s~~~LaV~~~~ 211 (787)
++++++++ +++|+|||+++++.+.++++++.|.+++++++.++++.++
T Consensus 72 ~~~~~~~~--------------------------------d~~v~iWd~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~ 119 (355)
T 3vu4_A 72 YVAFVTGV--------------------------------KEVVHIWDDVKKQDVSRIKVDAPVKDLFLSREFIVVSYGD 119 (355)
T ss_dssp EEEEECSS--------------------------------TTEEEEEETTTTEEEEEEECSSCEEEEEECSSEEEEEETT
T ss_pred EEEEEECC--------------------------------ccEEEEEECCCCcEEEEEECCCceEEEEEcCCEEEEEEcC
Confidence 66654432 2599999999999999999999999999999999999999
Q ss_pred eEEEEECCCC-ceeEEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCcceeccccCCCCCcCCCcCCCC
Q 003907 212 QIYCFDALTL-ENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGG 290 (787)
Q Consensus 212 ~I~iwD~~T~-e~l~tl~t~p~p~~~~~~~~~~~~~~~~lAlspr~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~sp~~ 290 (787)
+|++||+.++ +.++++.+ + .+.+++++.+||+++
T Consensus 120 ~i~i~d~~~~~~~~~~~~~---~-------------~~~~~~s~~~la~~s----------------------------- 154 (355)
T 3vu4_A 120 VISVFKFGNPWKRITDDIR---F-------------GGVCEFSNGLLVYSN----------------------------- 154 (355)
T ss_dssp EEEEEESSTTCCBSSCCEE---E-------------EEEEEEETTEEEEEE-----------------------------
T ss_pred EEEEEECCCCceeeEEecc---C-------------CceEEEEccEEEEeC-----------------------------
Confidence 9999999988 66665554 2 234566555555541
Q ss_pred CceeEeeehhhhhhhhcccceeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECCCCc----------
Q 003907 291 SSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRA---------- 360 (787)
Q Consensus 291 g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~---------- 360 (787)
+..+|.|+|||+.+++
T Consensus 155 ------------------------------------------------------g~~~g~v~iwd~~~~~~~~~~~~~~~ 180 (355)
T 3vu4_A 155 ------------------------------------------------------EFNLGQIHITKLQSSGSATTQDQGVQ 180 (355)
T ss_dssp ------------------------------------------------------SSCTTCEEEEECCC------------
T ss_pred ------------------------------------------------------CCcCcEEEEEECCCCCcccccccccc
Confidence 2346789999998765
Q ss_pred ------EEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccE
Q 003907 361 ------IISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATI 434 (787)
Q Consensus 361 ------~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I 434 (787)
.+..+.+|..+|.+++|+|+|++|||||.||+.|+|||+.. + ..+.++++|.+...|
T Consensus 181 ~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~-------~----------~~~~~~~~g~h~~~v 243 (355)
T 3vu4_A 181 QKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTED-------G----------VLVREFRRGLDRADV 243 (355)
T ss_dssp ------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTT-------C----------CEEEEEECTTCCSCE
T ss_pred ccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCC-------C----------cEEEEEEcCCCCCcE
Confidence 26889999999999999999999999999775599999964 3 577888777556789
Q ss_pred EEEEEccCCCEEEEEeCCCeEEEEeCCCC
Q 003907 435 QDICFSHYSQWIAIVSSKGTCHVFVLSPF 463 (787)
Q Consensus 435 ~slaFSpDg~~LAs~S~dgTVhIwdl~~~ 463 (787)
.+++|+|||++|++++.|++|+|||+...
T Consensus 244 ~~~~~s~~~~~l~s~s~d~~v~iw~~~~~ 272 (355)
T 3vu4_A 244 VDMKWSTDGSKLAVVSDKWTLHVFEIFND 272 (355)
T ss_dssp EEEEECTTSCEEEEEETTCEEEEEESSCC
T ss_pred EEEEECCCCCEEEEEECCCEEEEEEccCC
Confidence 99999999999999999999999999764
No 2
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=99.95 E-value=3.7e-25 Score=237.15 Aligned_cols=290 Identities=12% Similarity=0.134 Sum_probs=209.3
Q ss_pred eecccCCCCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCC-ceeEeeeeccCcEEEEEEecCCCCCCCC
Q 003907 46 ASISNASEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDAS-NFNELVSKRDGPVSFLQMQPFPVKDDGC 123 (787)
Q Consensus 46 ~~~~~~~~~~~~~v~wa~Fd~l~~~~~~~~~vL~lG~~~G-~qVWdv~~~~-~~~ells~~dg~V~~v~~lP~P~~~~~~ 123 (787)
+.+.....+|++.|..+.|.... ..++..|++|..+| ++|||+.... .+...+..|.+.|.++.+.|+
T Consensus 22 g~~~~~~~~H~~~V~~v~~~~~~---~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~------- 91 (321)
T 3ow8_A 22 GILFKQEQAHDDAIWSVAWGTNK---KENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHT------- 91 (321)
T ss_dssp EEEEEETTSSSSCEEEEEEC----------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSS-------
T ss_pred hheeeecccCCCcEEEEEEecCC---CCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCC-------
Confidence 33333467899999999996411 12356888888776 9999996532 123356788999999998863
Q ss_pred CCccccCcEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCC-CcEEEEEecC
Q 003907 124 EGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFR-SSVCMVRCSP 202 (787)
Q Consensus 124 d~F~~srpLLavV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~v~tL~f~-s~V~sV~~s~ 202 (787)
.++|+..+. +++|++||+++++.+.++..+ ..|..+++++
T Consensus 92 ------~~~l~s~s~---------------------------------D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~sp 132 (321)
T 3ow8_A 92 ------LPIAASSSL---------------------------------DAHIRLWDLENGKQIKSIDAGPVDAWTLAFSP 132 (321)
T ss_dssp ------SSEEEEEET---------------------------------TSEEEEEETTTTEEEEEEECCTTCCCCEEECT
T ss_pred ------CCEEEEEeC---------------------------------CCcEEEEECCCCCEEEEEeCCCccEEEEEECC
Confidence 246654221 369999999999999999754 5788999988
Q ss_pred --CeEEEEe-CCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEcc--ceEEEecCCceecCcceeccccC
Q 003907 203 --RIVAVGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP--RWLAYASNTLLLSNSGRLSPQNL 277 (787)
Q Consensus 203 --~~LaV~~-~~~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~~~~~lAlsp--r~LAyas~~~~l~~~g~~s~q~l 277 (787)
++|+++. ++.|++||+.+++...++..+... ...++++| ++||.++.+..+ ..|+..
T Consensus 133 dg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~-------------v~~~~~spdg~~lasg~~dg~i-----~iwd~~ 194 (321)
T 3ow8_A 133 DSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKF-------------ILSIAYSPDGKYLASGAIDGII-----NIFDIA 194 (321)
T ss_dssp TSSEEEEECTTSEEEEEETTTCSEEEEEECSSSC-------------EEEEEECTTSSEEEEEETTSCE-----EEEETT
T ss_pred CCCEEEEEcCCCcEEEEEcCCCceeEEecCCCce-------------EEEEEECCCCCEEEEEcCCCeE-----EEEECC
Confidence 6788765 568999999999988888765442 35688888 789988765211 123321
Q ss_pred CCCCcCCCcCCCCCceeEeeehhhhhhhhcccceeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECC
Q 003907 278 TPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFV 357 (787)
Q Consensus 278 t~~~~s~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~ 357 (787)
+ +.++ +++.++. .....+.++++.+ .+++++.||.|+|||+.
T Consensus 195 ~------------~~~~----------------~~~~~h~------~~v~~l~~spd~~----~l~s~s~dg~i~iwd~~ 236 (321)
T 3ow8_A 195 T------------GKLL----------------HTLEGHA------MPIRSLTFSPDSQ----LLVTASDDGYIKIYDVQ 236 (321)
T ss_dssp T------------TEEE----------------EEECCCS------SCCCEEEECTTSC----EEEEECTTSCEEEEETT
T ss_pred C------------CcEE----------------EEEcccC------CceeEEEEcCCCC----EEEEEcCCCeEEEEECC
Confidence 1 1110 1111110 1122334444333 34578889999999999
Q ss_pred CCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEE
Q 003907 358 TRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDI 437 (787)
Q Consensus 358 s~~~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~sl 437 (787)
+++.+..+.+|..+|.+++|+|+|++||+++.||+ |+|||+.. + .++.++. + +...|+++
T Consensus 237 ~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~-v~iwd~~~-------~----------~~~~~~~-~-h~~~v~~v 296 (321)
T 3ow8_A 237 HANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKS-VKVWDVGT-------R----------TCVHTFF-D-HQDQVWGV 296 (321)
T ss_dssp TCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSC-EEEEETTT-------T----------EEEEEEC-C-CSSCEEEE
T ss_pred CcceeEEEcCCCCceEEEEECCCCCEEEEEeCCCc-EEEEeCCC-------C----------EEEEEEc-C-CCCcEEEE
Confidence 99999999999999999999999999999999776 99999854 2 4666664 3 34579999
Q ss_pred EEccCCCEEEEEeCCCeEEEEeC
Q 003907 438 CFSHYSQWIAIVSSKGTCHVFVL 460 (787)
Q Consensus 438 aFSpDg~~LAs~S~dgTVhIwdl 460 (787)
+|+|||++|++++.|++|+|||+
T Consensus 297 ~~s~~g~~l~s~~~d~~i~vwd~ 319 (321)
T 3ow8_A 297 KYNGNGSKIVSVGDDQEIHIYDC 319 (321)
T ss_dssp EECTTSSEEEEEETTCCEEEEEC
T ss_pred EECCCCCEEEEEeCCCeEEEEeC
Confidence 99999999999999999999996
No 3
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=99.95 E-value=2e-25 Score=247.08 Aligned_cols=293 Identities=12% Similarity=0.087 Sum_probs=203.8
Q ss_pred CCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCceeEeeeeccCcEEEEEEecCCCCCCCCCCccccCc
Q 003907 53 EDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHP 131 (787)
Q Consensus 53 ~~~~~~v~wa~Fd~l~~~~~~~~~vL~lG~~~G-~qVWdv~~~~~~~ells~~dg~V~~v~~lP~P~~~~~~d~F~~srp 131 (787)
.+|++.|..+.|.. ++.+|++|..+| ++|||++ .+++...+..|.++|.++.+.|+ ..
T Consensus 105 ~gh~~~V~~~~~~p-------~~~~l~s~s~Dg~i~vwd~~-~~~~~~~l~~h~~~V~~v~~~~~-------------~~ 163 (410)
T 1vyh_C 105 SGHRSPVTRVIFHP-------VFSVMVSASEDATIKVWDYE-TGDFERTLKGHTDSVQDISFDHS-------------GK 163 (410)
T ss_dssp ECCSSCEEEEEECS-------SSSEEEEEESSSCEEEEETT-TCCCCEEECCCSSCEEEEEECTT-------------SS
T ss_pred cccCCcEEEEEEcC-------CCCEEEEEeCCCeEEEEECC-CCcEEEEEeccCCcEEEEEEcCC-------------CC
Confidence 46888999999973 356888888876 9999996 46777888999999999999864 22
Q ss_pred EEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCC-CcEEEEEecC--CeEEEE
Q 003907 132 FLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFR-SSVCMVRCSP--RIVAVG 208 (787)
Q Consensus 132 LLavV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~v~tL~f~-s~V~sV~~s~--~~LaV~ 208 (787)
+|+..+. +++|++||+.+++++.++..+ ..|.++++++ +.|+++
T Consensus 164 ~l~sgs~---------------------------------D~~i~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~ 210 (410)
T 1vyh_C 164 LLASCSA---------------------------------DMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSA 210 (410)
T ss_dssp EEEEEET---------------------------------TSCCCEEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEE
T ss_pred EEEEEeC---------------------------------CCeEEEEeCCCCceeEEEcCCCCCEEEEEEeCCCCEEEEE
Confidence 6655331 258999999999999988755 5899999987 567765
Q ss_pred e-CCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEcc--ceEEEecCCceecCcceeccccCCCCCcCCC
Q 003907 209 L-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP--RWLAYASNTLLLSNSGRLSPQNLTPSGVSPS 285 (787)
Q Consensus 209 ~-~~~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~~~~~lAlsp--r~LAyas~~~~l~~~g~~s~q~lt~~~~s~s 285 (787)
. ++.|++||+.+++++.++..|..+ ...++++| ++||.++.+..+ ..|+..+......-
T Consensus 211 s~D~~i~~wd~~~~~~~~~~~~h~~~-------------v~~~~~~~~g~~l~s~s~D~~v-----~vwd~~~~~~~~~~ 272 (410)
T 1vyh_C 211 SRDKTIKMWEVQTGYCVKTFTGHREW-------------VRMVRPNQDGTLIASCSNDQTV-----RVWVVATKECKAEL 272 (410)
T ss_dssp ETTSEEEEEETTTCCEEEEEECCSSC-------------EEEEEECTTSSEEEEEETTSCE-----EEEETTTCCEEEEE
T ss_pred eCCCeEEEEECCCCcEEEEEeCCCcc-------------EEEEEECCCCCEEEEEcCCCeE-----EEEECCCCceeeEe
Confidence 4 668999999999999988876653 34567776 788887765211 12332221000000
Q ss_pred cCCCCCceeEeeehhhhhhhhcccceeecccccccCCCCCCCCcccC-----CccccccccccccCCCceEEEEECCCCc
Q 003907 286 TSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPN-----SVWKVGRHAGADMDNAGIVVVKDFVTRA 360 (787)
Q Consensus 286 ~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~~s~s-----~~~~~~~~~~~s~~~dG~V~IwDl~s~~ 360 (787)
........... +.|++........ ......+..+++++.||+|+|||+.+++
T Consensus 273 ~~h~~~v~~~~-----------------------~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~ 329 (410)
T 1vyh_C 273 REHRHVVECIS-----------------------WAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGM 329 (410)
T ss_dssp CCCSSCEEEEE-----------------------ECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTE
T ss_pred cCCCceEEEEE-----------------------EcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCc
Confidence 00000000000 0111000000000 0000011235578899999999999999
Q ss_pred EEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEc
Q 003907 361 IISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFS 440 (787)
Q Consensus 361 ~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFS 440 (787)
.+..+.+|..+|.+++|+|+|++|+|++.|| .|+|||+.. + .++..+. + +...|++++|+
T Consensus 330 ~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~-~i~vwd~~~-------~----------~~~~~~~-~-h~~~v~~l~~~ 389 (410)
T 1vyh_C 330 CLMTLVGHDNWVRGVLFHSGGKFILSCADDK-TLRVWDYKN-------K----------RCMKTLN-A-HEHFVTSLDFH 389 (410)
T ss_dssp EEEEEECCSSCEEEEEECSSSSCEEEEETTT-EEEEECCTT-------S----------CCCEEEE-C-CSSCEEEEEEC
T ss_pred eEEEEECCCCcEEEEEEcCCCCEEEEEeCCC-eEEEEECCC-------C----------ceEEEEc-C-CCCcEEEEEEc
Confidence 9999999999999999999999999999966 599999854 2 3445554 3 34579999999
Q ss_pred cCCCEEEEEeCCCeEEEEeC
Q 003907 441 HYSQWIAIVSSKGTCHVFVL 460 (787)
Q Consensus 441 pDg~~LAs~S~dgTVhIwdl 460 (787)
||+++|++++.|++|+||++
T Consensus 390 ~~~~~l~sgs~D~~i~vW~~ 409 (410)
T 1vyh_C 390 KTAPYVVTGSVDQTVKVWEC 409 (410)
T ss_dssp SSSSCEEEEETTSEEEEEC-
T ss_pred CCCCEEEEEeCCCcEEEEeC
Confidence 99999999999999999986
No 4
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=99.94 E-value=1.9e-24 Score=232.39 Aligned_cols=254 Identities=14% Similarity=0.116 Sum_probs=190.9
Q ss_pred CCCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCceeEeeeeccCcEEEEEEecCCCCCCCCCCccccC
Q 003907 52 SEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLH 130 (787)
Q Consensus 52 ~~~~~~~v~wa~Fd~l~~~~~~~~~vL~lG~~~G-~qVWdv~~~~~~~ells~~dg~V~~v~~lP~P~~~~~~d~F~~sr 130 (787)
..+|++.|..+.|.. +++.|++|..+| ++|||+.. ++....+..|.++|..+.+.|+.
T Consensus 51 l~gH~~~v~~~~~s~-------d~~~l~s~s~Dg~v~iWd~~~-~~~~~~~~~~~~~v~~~~~s~~~------------- 109 (340)
T 1got_B 51 LRGHLAKIYAMHWGT-------DSRLLLSASQDGKLIIWDSYT-TNKVHAIPLRSSWVMTCAYAPSG------------- 109 (340)
T ss_dssp ECCCSSCEEEEEECT-------TSSEEEEEETTTEEEEEETTT-CCEEEEEECSSSCEEEEEECTTS-------------
T ss_pred ecCCCCceEEEEECC-------CCCEEEEEeCCCcEEEEECCC-CCcceEeecCCccEEEEEECCCC-------------
Confidence 567999999999963 367888888877 99999964 55666778889999999998742
Q ss_pred cEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCC----eEEEEEeCC-CcEEEEEecC-Ce
Q 003907 131 PFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSH----CYEHVLRFR-SSVCMVRCSP-RI 204 (787)
Q Consensus 131 pLLavV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg----~~v~tL~f~-s~V~sV~~s~-~~ 204 (787)
.+|++.+. +++|++||+.++ +....+..+ ..|..+.+++ ..
T Consensus 110 ~~l~s~~~---------------------------------d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~ 156 (340)
T 1got_B 110 NYVACGGL---------------------------------DNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ 156 (340)
T ss_dssp SEEEEEET---------------------------------TCEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETTE
T ss_pred CEEEEEeC---------------------------------CCeEEEEECccCCCcceeEEEecCCCccEEEEEECCCCc
Confidence 26654221 268999999876 355566544 5899998876 44
Q ss_pred EEE-EeCCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCcceeccccCCCCCcC
Q 003907 205 VAV-GLATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVS 283 (787)
Q Consensus 205 LaV-~~~~~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~~~~~lAlspr~LAyas~~~~l~~~g~~s~q~lt~~~~s 283 (787)
|++ +.++.|++||+.+++.+.++..|..+ ...++++| +.
T Consensus 157 l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~-------------v~~~~~~~-------~~-------------------- 196 (340)
T 1got_B 157 IVTSSGDTTCALWDIETGQQTTTFTGHTGD-------------VMSLSLAP-------DT-------------------- 196 (340)
T ss_dssp EEEEETTSCEEEEETTTTEEEEEECCCSSC-------------EEEEEECT-------TS--------------------
T ss_pred EEEEECCCcEEEEECCCCcEEEEEcCCCCc-------------eEEEEECC-------CC--------------------
Confidence 554 55678999999999988877765542 22333322 10
Q ss_pred CCcCCCCCceeEeeehhhhhhhhcccceeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECCCCcEEE
Q 003907 284 PSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIIS 363 (787)
Q Consensus 284 ~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~v~ 363 (787)
. .+++++.||.|+|||+.+++.+.
T Consensus 197 --------~------------------------------------------------~l~sg~~d~~v~~wd~~~~~~~~ 220 (340)
T 1got_B 197 --------R------------------------------------------------LFVSGACDASAKLWDVREGMCRQ 220 (340)
T ss_dssp --------S------------------------------------------------EEEEEETTSCEEEEETTTCSEEE
T ss_pred --------C------------------------------------------------EEEEEeCCCcEEEEECCCCeeEE
Confidence 0 01234568999999999999999
Q ss_pred EeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCC
Q 003907 364 QFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYS 443 (787)
Q Consensus 364 ~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg 443 (787)
.+.+|..+|.+++|+|+|++||+++.||+ |+|||+.. + ..+..+........|.+++|+|||
T Consensus 221 ~~~~h~~~v~~v~~~p~~~~l~s~s~d~~-v~iwd~~~-------~----------~~~~~~~~~~~~~~v~~~~~s~~g 282 (340)
T 1got_B 221 TFTGHESDINAICFFPNGNAFATGSDDAT-CRLFDLRA-------D----------QELMTYSHDNIICGITSVSFSKSG 282 (340)
T ss_dssp EECCCSSCEEEEEECTTSSEEEEEETTSC-EEEEETTT-------T----------EEEEEECCTTCCSCEEEEEECTTS
T ss_pred EEcCCcCCEEEEEEcCCCCEEEEEcCCCc-EEEEECCC-------C----------cEEEEEccCCcccceEEEEECCCC
Confidence 99999999999999999999999999776 99999854 2 344444322222369999999999
Q ss_pred CEEEEEeCCCeEEEEeCCCCCCcccccccc
Q 003907 444 QWIAIVSSKGTCHVFVLSPFGGDSGFQTLS 473 (787)
Q Consensus 444 ~~LAs~S~dgTVhIwdl~~~gg~~~~~~H~ 473 (787)
++|++++.|++|+|||+........+.+|.
T Consensus 283 ~~l~~g~~d~~i~vwd~~~~~~~~~~~~h~ 312 (340)
T 1got_B 283 RLLLAGYDDFNCNVWDALKADRAGVLAGHD 312 (340)
T ss_dssp SEEEEEETTSEEEEEETTTCCEEEEEECCS
T ss_pred CEEEEECCCCeEEEEEcccCcEeeEeecCC
Confidence 999999999999999998765555566674
No 5
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=99.94 E-value=7.5e-25 Score=238.21 Aligned_cols=281 Identities=14% Similarity=0.082 Sum_probs=189.8
Q ss_pred CCCCcEEEEEEeeccCCCCCCCeEEEEEecCcEEEEEccC----------CCceeEeeeeccCcEEEEEEecCCCCCCCC
Q 003907 54 DLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNGFQVLDVED----------ASNFNELVSKRDGPVSFLQMQPFPVKDDGC 123 (787)
Q Consensus 54 ~~~~~v~wa~Fd~l~~~~~~~~~vL~lG~~~G~qVWdv~~----------~~~~~ells~~dg~V~~v~~lP~P~~~~~~ 123 (787)
.+...|..+.|.. ++++|+.|.+..+++||... ........-.++.+|..+++.|+
T Consensus 28 ~~~~~v~~~~fs~-------dG~~l~~~sd~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d------- 93 (344)
T 4gqb_B 28 CMERQLEAARYRS-------DGALLLGASSLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGE------- 93 (344)
T ss_dssp SCCSEEEEEEECT-------TSCEEEEEECCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETT-------
T ss_pred cccCCEEEEEECC-------CCCEEEEEeCCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCC-------
Confidence 3556789999964 47888888877788887421 01111122234578999999874
Q ss_pred CCccccCcEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEe-----CCCcEEEE
Q 003907 124 EGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLR-----FRSSVCMV 198 (787)
Q Consensus 124 d~F~~srpLLavV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~v~tL~-----f~s~V~sV 198 (787)
+ .|++.+ + +++|+|||+.+++.+..++ +...|.+|
T Consensus 94 ------~-~l~~~s-~--------------------------------dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v 133 (344)
T 4gqb_B 94 ------R-GILVAS-D--------------------------------SGAVELWELDENETLIVSKFCKYEHDDIVSTV 133 (344)
T ss_dssp ------T-EEEEEE-T--------------------------------TSEEEEEEECTTSSCEEEEEEEECCSSCEEEE
T ss_pred ------C-eEEEEE-C--------------------------------CCEEEEEeccCCCceeEeeccccCCCCCEEEE
Confidence 1 344322 1 2689999999998766554 34689999
Q ss_pred EecC--CeEEEEe-CCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEcc---ceEEEecCCceecCccee
Q 003907 199 RCSP--RIVAVGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP---RWLAYASNTLLLSNSGRL 272 (787)
Q Consensus 199 ~~s~--~~LaV~~-~~~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~~~~~lAlsp---r~LAyas~~~~l~~~g~~ 272 (787)
+|++ ++|+++. ++.|++||+.+++.+.++.+|..+ ...++++| ..|+.++.+.. ..
T Consensus 134 ~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~-------------V~~~~~~~~~~~~l~s~s~D~~-----v~ 195 (344)
T 4gqb_B 134 SVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQ-------------VTCVAASPHKDSVFLSCSEDNR-----IL 195 (344)
T ss_dssp EECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSC-------------EEEEEECSSCTTEEEEEETTSC-----EE
T ss_pred EECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCCc-------------eEEEEecCCCCCceeeeccccc-----cc
Confidence 9987 6788765 567999999999999999887663 35678876 46777765421 12
Q ss_pred ccccCCCCCcCCCcCCCCCceeEeeehhhhhhhhcccceeecccccccCCCCCCCCcccCCccccccccccccCCCceEE
Q 003907 273 SPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVV 352 (787)
Q Consensus 273 s~q~lt~~~~s~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~ 352 (787)
.|+..++.... ++... ........+.+++.. ...++.+..||+|+
T Consensus 196 iwd~~~~~~~~----------------------------~~~~~----~~~~~~~~~~~~p~~---~~~l~sg~~dg~v~ 240 (344)
T 4gqb_B 196 LWDTRCPKPAS----------------------------QIGCS----APGYLPTSLAWHPQQ---SEVFVFGDENGTVS 240 (344)
T ss_dssp EEETTSSSCEE----------------------------ECC--------CCCEEEEEECSSC---TTEEEEEETTSEEE
T ss_pred cccccccceee----------------------------eeecc----eeeccceeeeecCCC---CcceEEeccCCcEE
Confidence 34433221100 00000 000000111222211 11234677899999
Q ss_pred EEECCCCcEEEEeccCCCCeEEEEECCCC-CEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEeccccc
Q 003907 353 VKDFVTRAIISQFKAHTSPISALCFDPSG-TLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITS 431 (787)
Q Consensus 353 IwDl~s~~~v~~~~aH~~pIsaLaFSpdG-~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~ 431 (787)
|||+.+++.+.++.+|..+|.+|+|+|+| ++|||+|.|++ |+|||+.. + .+.++. | |.
T Consensus 241 ~wd~~~~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~-i~vwd~~~-------~-----------~~~~~~-~-H~ 299 (344)
T 4gqb_B 241 LVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCS-LAVLDSSL-------S-----------ELFRSQ-A-HR 299 (344)
T ss_dssp EEESCC--CCEEEECCSSCEEEEEECSSSSCCEEEEETTSC-EEEECTTC-------C-----------EEEEEC-C-CS
T ss_pred EEECCCCcEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCe-EEEEECCC-------C-----------cEEEEc-C-CC
Confidence 99999999999999999999999999998 58999999776 99999853 2 445553 4 34
Q ss_pred ccEEEEEEccCCC-EEEEEeCCCeEEEEeCCC
Q 003907 432 ATIQDICFSHYSQ-WIAIVSSKGTCHVFVLSP 462 (787)
Q Consensus 432 a~I~slaFSpDg~-~LAs~S~dgTVhIwdl~~ 462 (787)
..|++|+||||++ +|+++|.|++|++|++..
T Consensus 300 ~~V~~v~~sp~~~~llas~s~D~~v~~w~v~~ 331 (344)
T 4gqb_B 300 DFVRDATWSPLNHSLLTTVGWDHQVVHHVVPT 331 (344)
T ss_dssp SCEEEEEECSSSTTEEEEEETTSCEEEEECCC
T ss_pred CCEEEEEEeCCCCeEEEEEcCCCeEEEEECCC
Confidence 5799999999986 577899999999999975
No 6
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=99.94 E-value=8.9e-24 Score=223.55 Aligned_cols=252 Identities=13% Similarity=0.070 Sum_probs=186.4
Q ss_pred CCCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCceeEeeeeccCcEEEEEEecCCCCCCCCCCccccC
Q 003907 52 SEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLH 130 (787)
Q Consensus 52 ~~~~~~~v~wa~Fd~l~~~~~~~~~vL~lG~~~G-~qVWdv~~~~~~~ells~~dg~V~~v~~lP~P~~~~~~d~F~~sr 130 (787)
..+|.+.|..+.|.. +++.|++|..+| ++|||++. +.....+..|.++|..+++.|+.
T Consensus 9 ~~~h~~~V~~~~fsp-------~~~~l~s~~~dg~v~lWd~~~-~~~~~~~~~~~~~v~~~~~~~~~------------- 67 (304)
T 2ynn_A 9 FSNRSDRVKGIDFHP-------TEPWVLTTLYSGRVELWNYET-QVEVRSIQVTETPVRAGKFIARK------------- 67 (304)
T ss_dssp EEEECSCEEEEEECS-------SSSEEEEEETTSEEEEEETTT-TEEEEEEECCSSCEEEEEEEGGG-------------
T ss_pred ecCCCCceEEEEECC-------CCCEEEEEcCCCcEEEEECCC-CceeEEeeccCCcEEEEEEeCCC-------------
Confidence 456888999999973 356777777776 99999964 55666778889999999998742
Q ss_pred cEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCC-CcEEEEEecC--CeEEE
Q 003907 131 PFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFR-SSVCMVRCSP--RIVAV 207 (787)
Q Consensus 131 pLLavV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~v~tL~f~-s~V~sV~~s~--~~LaV 207 (787)
.+|++.+. +++|++||+++++.+.+++.+ ..|.+|++++ ++|++
T Consensus 68 ~~l~s~s~---------------------------------d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s 114 (304)
T 2ynn_A 68 NWIIVGSD---------------------------------DFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLS 114 (304)
T ss_dssp TEEEEEET---------------------------------TSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEE
T ss_pred CEEEEECC---------------------------------CCEEEEEECCCCcEEEEEeCCCCcEEEEEEcCCCCEEEE
Confidence 26654221 268999999999999999865 5899999988 56777
Q ss_pred Ee-CCeEEEEECCCCcee-EEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCcceeccccCCCCCcCCC
Q 003907 208 GL-ATQIYCFDALTLENK-FSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPS 285 (787)
Q Consensus 208 ~~-~~~I~iwD~~T~e~l-~tl~t~p~p~~~~~~~~~~~~~~~~lAlspr~LAyas~~~~l~~~g~~s~q~lt~~~~s~s 285 (787)
+. ++.|++||+.+...+ .++..|..+ ...++++| .+
T Consensus 115 gs~D~~v~lWd~~~~~~~~~~~~~h~~~-------------v~~v~~~p-------~~---------------------- 152 (304)
T 2ynn_A 115 GSDDLTVKLWNWENNWALEQTFEGHEHF-------------VMCVAFNP-------KD---------------------- 152 (304)
T ss_dssp EETTSCEEEEEGGGTTEEEEEECCCCSC-------------EEEEEECT-------TC----------------------
T ss_pred ECCCCeEEEEECCCCcchhhhhcccCCc-------------EEEEEECC-------CC----------------------
Confidence 65 567999999877433 444444432 12233322 10
Q ss_pred cCCCCCceeEeeehhhhhhhhcccceeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECCCCcEEEEe
Q 003907 286 TSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQF 365 (787)
Q Consensus 286 ~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~v~~~ 365 (787)
+. .++++..||+|+|||+.+......+
T Consensus 153 -----~~------------------------------------------------~l~sgs~D~~v~iwd~~~~~~~~~~ 179 (304)
T 2ynn_A 153 -----PS------------------------------------------------TFASGCLDRTVKVWSLGQSTPNFTL 179 (304)
T ss_dssp -----TT------------------------------------------------EEEEEETTSEEEEEETTCSSCSEEE
T ss_pred -----CC------------------------------------------------EEEEEeCCCeEEEEECCCCCcccee
Confidence 00 0123457899999999887766555
Q ss_pred c-cCCCCeEEEEECC--CCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccC
Q 003907 366 K-AHTSPISALCFDP--SGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHY 442 (787)
Q Consensus 366 ~-aH~~pIsaLaFSp--dG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpD 442 (787)
. +|...|..++|+| ++.+|||++.|+ .|+|||+.. + .++..+. | +...|.+++|+||
T Consensus 180 ~~~~~~~v~~~~~~~~~~~~~l~s~s~D~-~i~iWd~~~-------~----------~~~~~~~-~-h~~~v~~~~~~p~ 239 (304)
T 2ynn_A 180 TTGQERGVNYVDYYPLPDKPYMITASDDL-TIKIWDYQT-------K----------SCVATLE-G-HMSNVSFAVFHPT 239 (304)
T ss_dssp ECCCTTCEEEEEECCSTTCCEEEEEETTS-EEEEEETTT-------T----------EEEEEEE-C-CSSCEEEEEECSS
T ss_pred ccCCcCcEEEEEEEEcCCCCEEEEEcCCC-eEEEEeCCC-------C----------ccceeeC-C-CCCCEEEEEECCC
Confidence 4 5778999999987 788999999966 599999964 2 4666665 4 3457999999999
Q ss_pred CCEEEEEeCCCeEEEEeCCCCCCccccccc
Q 003907 443 SQWIAIVSSKGTCHVFVLSPFGGDSGFQTL 472 (787)
Q Consensus 443 g~~LAs~S~dgTVhIwdl~~~gg~~~~~~H 472 (787)
+++|++++.||+|+|||+........+..|
T Consensus 240 ~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~ 269 (304)
T 2ynn_A 240 LPIIISGSEDGTLKIWNSSTYKVEKTLNVG 269 (304)
T ss_dssp SSEEEEEETTSCEEEEETTTCCEEEEECCS
T ss_pred CCEEEEEcCCCeEEEEECCCCceeeeccCC
Confidence 999999999999999999876554444444
No 7
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=99.93 E-value=9e-24 Score=230.64 Aligned_cols=223 Identities=14% Similarity=0.114 Sum_probs=163.1
Q ss_pred cEEEEEccCCCceeEeeee--------ccCcEEEEEEecCCCCCCCCCCccccCcEEEEEEcCCCCCCCCCCCcCCCCCc
Q 003907 85 GFQVLDVEDASNFNELVSK--------RDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGV 156 (787)
Q Consensus 85 G~qVWdv~~~~~~~ells~--------~dg~V~~v~~lP~P~~~~~~d~F~~srpLLavV~~d~~~~~~~~~~~~~~~~~ 156 (787)
.+|+|+++...+..+.+.. ++..|++++|.|+. + +||+++++
T Consensus 105 ~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg-----------~--~la~as~~----------------- 154 (365)
T 4h5i_A 105 HLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREG-----------T--VAAIASSK----------------- 154 (365)
T ss_dssp CEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTS-----------S--CEEEEESC-----------------
T ss_pred cEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCC-----------C--EEEEEECC-----------------
Confidence 4999999765544443332 23568999998863 2 66665532
Q ss_pred ccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCCcEEEEEecC--CeEEEEeCCeEEEEECCCCceeEEEEecCCcc
Q 003907 157 RDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRSSVCMVRCSP--RIVAVGLATQIYCFDALTLENKFSVLTYPVPQ 234 (787)
Q Consensus 157 r~g~~~~~~~~~~~~p~tVrlWdlktg~~v~tL~f~s~V~sV~~s~--~~LaV~~~~~I~iwD~~T~e~l~tl~t~p~p~ 234 (787)
.+++|+|||+++++++.+++....|++|+|+| ++|+++.++.+.+|+..+++.+.........
T Consensus 155 --------------~d~~i~iwd~~~~~~~~~~~~~~~V~~v~fspdg~~l~s~s~~~~~~~~~~~~~~~~~~~~~~~~- 219 (365)
T 4h5i_A 155 --------------VPAIMRIIDPSDLTEKFEIETRGEVKDLHFSTDGKVVAYITGSSLEVISTVTGSCIARKTDFDKN- 219 (365)
T ss_dssp --------------SSCEEEEEETTTTEEEEEEECSSCCCEEEECTTSSEEEEECSSCEEEEETTTCCEEEEECCCCTT-
T ss_pred --------------CCCEEEEeECCCCcEEEEeCCCCceEEEEEccCCceEEeccceeEEEEEeccCcceeeeecCCCC-
Confidence 14799999999999999999999999999998 6899998899999999988765543321110
Q ss_pred cCCCCccccccccceeEEcc--ceEEEecCCceecCcceeccccCCCCCcCCCcCCCCCceeEeeehhhhhhhhccccee
Q 003907 235 LAGQGAVGINVGYGPMAVGP--RWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKT 312 (787)
Q Consensus 235 ~~~~~~~~~~~~~~~lAlsp--r~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~sp~~g~lva~~a~d~sk~la~G~~kt 312 (787)
.....++++| ++|+.++.+
T Consensus 220 ----------~~v~~v~fspdg~~l~~~s~d------------------------------------------------- 240 (365)
T 4h5i_A 220 ----------WSLSKINFIADDTVLIAASLK------------------------------------------------- 240 (365)
T ss_dssp ----------EEEEEEEEEETTEEEEEEEES-------------------------------------------------
T ss_pred ----------CCEEEEEEcCCCCEEEEEecC-------------------------------------------------
Confidence 0123345544 233332210
Q ss_pred ecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECCCCcE----EEEeccCCCCeEEEEECCCCCEEEEEE
Q 003907 313 LSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAI----ISQFKAHTSPISALCFDPSGTLLVTAS 388 (787)
Q Consensus 313 ls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~----v~~~~aH~~pIsaLaFSpdG~lLATaS 388 (787)
......+++||+..... ...+.+|..+|++|+|||||++||+|+
T Consensus 241 --------------------------------~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs 288 (365)
T 4h5i_A 241 --------------------------------KGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLAS 288 (365)
T ss_dssp --------------------------------SSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEE
T ss_pred --------------------------------CcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEc
Confidence 01123577788766542 456789999999999999999999999
Q ss_pred cCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEeCCC
Q 003907 389 VYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSP 462 (787)
Q Consensus 389 ~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~~ 462 (787)
.|++ |+|||+.. + ..+.++.+|+ ...|++|+|||||++||++|.|+||+||+|.+
T Consensus 289 ~D~~-V~iwd~~~-------~----------~~~~~~~~gH-~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~ 343 (365)
T 4h5i_A 289 NDNS-IALVKLKD-------L----------SMSKIFKQAH-SFAITEVTISPDSTYVASVSAANTIHIIKLPL 343 (365)
T ss_dssp TTSC-EEEEETTT-------T----------EEEEEETTSS-SSCEEEEEECTTSCEEEEEETTSEEEEEECCT
T ss_pred CCCE-EEEEECCC-------C----------cEEEEecCcc-cCCEEEEEECCCCCEEEEEeCCCeEEEEEcCC
Confidence 9776 99999864 3 5677776664 45799999999999999999999999999964
No 8
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=99.93 E-value=8.2e-24 Score=230.03 Aligned_cols=285 Identities=12% Similarity=0.033 Sum_probs=184.9
Q ss_pred CCCCCcEEEEEEeeccCCCCCCCeEEEEEec------Cc-EEEEEccCCCce---eEeeeeccCcEEEEEEecCCCCCCC
Q 003907 53 EDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQ------NG-FQVLDVEDASNF---NELVSKRDGPVSFLQMQPFPVKDDG 122 (787)
Q Consensus 53 ~~~~~~v~wa~Fd~l~~~~~~~~~vL~lG~~------~G-~qVWdv~~~~~~---~ells~~dg~V~~v~~lP~P~~~~~ 122 (787)
..|...|..+.|.. +++.|++|.. +| +++|+....... ......|.+.|..+++.|+.
T Consensus 39 ~~H~~~V~~v~fSp-------DG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~----- 106 (357)
T 4g56_B 39 ACMEVQIGAVRYRR-------DGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEK----- 106 (357)
T ss_dssp -CCCSEEEEEEECS-------SSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTT-----
T ss_pred ccccCCEEEEEECC-------CCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCC-----
Confidence 45888999999963 5789999986 33 788887442211 22234577889999999741
Q ss_pred CCCccccCcEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEe-----CCCcEEE
Q 003907 123 CEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLR-----FRSSVCM 197 (787)
Q Consensus 123 ~d~F~~srpLLavV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~v~tL~-----f~s~V~s 197 (787)
.+| +.+. +++|+|||+.+++.+...+ +...|.+
T Consensus 107 --------~~l-~~s~---------------------------------dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~ 144 (357)
T 4g56_B 107 --------GIL-VASD---------------------------------SGAVELWEILEKESLLVNKFAKYEHDDIVKT 144 (357)
T ss_dssp --------EEE-EEET---------------------------------TSCEEEC--------CCCCEEECCCSSCEEE
T ss_pred --------CEE-EEEC---------------------------------CCEEEEeeccccceeEEEeeccCCCCCCEEE
Confidence 143 3221 2579999999988664432 3468999
Q ss_pred EEecC--CeEEEEe-CCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEcc---ceEEEecCCceecCcce
Q 003907 198 VRCSP--RIVAVGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP---RWLAYASNTLLLSNSGR 271 (787)
Q Consensus 198 V~~s~--~~LaV~~-~~~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~~~~~lAlsp---r~LAyas~~~~l~~~g~ 271 (787)
|++++ ++|+++. ++.|++||+.+++.+..+..|..+ ...++++| ..++.++.+.. .
T Consensus 145 v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~-------------v~~v~~s~~~~~~~~s~~~dg~-----v 206 (357)
T 4g56_B 145 LSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSE-------------VNCVAACPGKDTIFLSCGEDGR-----I 206 (357)
T ss_dssp EEECSSSSEEEEEETTSCEEEEETTTTEEEEEECCCSSC-------------EEEEEECTTCSSCEEEEETTSC-----E
T ss_pred EEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCC-------------EEEEEEccCCCceeeeeccCCc-----e
Confidence 99988 5777765 567999999999998888776553 35677876 46666655421 1
Q ss_pred eccccCCCCCcC-CCcCCCCCceeEeeehhhhhhhhcccceeecccccccCCCCCCCCcccCCccccccccccccCCCce
Q 003907 272 LSPQNLTPSGVS-PSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGI 350 (787)
Q Consensus 272 ~s~q~lt~~~~s-~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~ 350 (787)
..|+..++.... ..... .......+.++++.. ..++.+..||.
T Consensus 207 ~~wd~~~~~~~~~~~~~~---------------------------------~~~~v~~v~~sp~~~---~~la~g~~d~~ 250 (357)
T 4g56_B 207 LLWDTRKPKPATRIDFCA---------------------------------SDTIPTSVTWHPEKD---DTFACGDETGN 250 (357)
T ss_dssp EECCTTSSSCBCBCCCTT---------------------------------CCSCEEEEEECTTST---TEEEEEESSSC
T ss_pred EEEECCCCceeeeeeecc---------------------------------ccccccchhhhhccc---ceEEEeecccc
Confidence 234433221100 00000 000011122222211 12446778999
Q ss_pred EEEEECCCCcEEEEeccCCCCeEEEEECCCC-CEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEeccc
Q 003907 351 VVVKDFVTRAIISQFKAHTSPISALCFDPSG-TLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGI 429 (787)
Q Consensus 351 V~IwDl~s~~~v~~~~aH~~pIsaLaFSpdG-~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~ 429 (787)
|+|||+.+++.+..+.+|..+|.+|+|+|+| ++|||+|.||+ |+|||+.. + +.+ ... +
T Consensus 251 i~~wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~-i~iwd~~~-------~----------~~~-~~~-~- 309 (357)
T 4g56_B 251 VSLVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLASISEDCT-VAVLDADF-------S----------EVF-RDL-S- 309 (357)
T ss_dssp EEEEESSCGGGCEEECCCSSCEEEEEECSSSSCCEEEEETTSC-EEEECTTS-------C----------EEE-EEC-C-
T ss_pred eeEEECCCCcEeEEEeccceeEEEEEEcCCCCCEEEEEeCCCE-EEEEECCC-------C----------cEe-EEC-C-
Confidence 9999999999999999999999999999987 68999999776 99999854 2 233 332 4
Q ss_pred ccccEEEEEEcc-CCCEEEEEeCCCeEEEEeCCCCCCc
Q 003907 430 TSATIQDICFSH-YSQWIAIVSSKGTCHVFVLSPFGGD 466 (787)
Q Consensus 430 ~~a~I~slaFSp-Dg~~LAs~S~dgTVhIwdl~~~gg~ 466 (787)
+...|++|+||| |+++||+++.||+|+||++...+..
T Consensus 310 H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~~~~~ 347 (357)
T 4g56_B 310 HRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPSEGRT 347 (357)
T ss_dssp CSSCEEEEEECSSSTTEEEEEETTSCEEEEECC-----
T ss_pred CCCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcc
Confidence 456799999998 8999999999999999999765543
No 9
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=99.93 E-value=2.3e-23 Score=219.62 Aligned_cols=263 Identities=11% Similarity=0.092 Sum_probs=180.1
Q ss_pred CCCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCC-CceeEeeeeccCcEEEEEEecCCCCCCCCCCcccc
Q 003907 52 SEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDA-SNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKL 129 (787)
Q Consensus 52 ~~~~~~~v~wa~Fd~l~~~~~~~~~vL~lG~~~G-~qVWdv~~~-~~~~ells~~dg~V~~v~~lP~P~~~~~~d~F~~s 129 (787)
..+|++.|..+.|+. +++.|++|..+| ++|||++.. .++...+..|.++|..|++.|.. .
T Consensus 5 ~~~h~~~V~~~~~s~-------~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~-----------~ 66 (297)
T 2pm7_B 5 ANAHNEMIHDAVMDY-------YGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPK-----------F 66 (297)
T ss_dssp CCSCSSCEEEEEECT-------TSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGG-----------G
T ss_pred ccCCcCceEEEEECC-------CCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCC-----------c
Confidence 567899999999974 366788888776 999999642 35667788999999999997521 1
Q ss_pred CcEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCe--EEEEEeC-CCcEEEEEecC----
Q 003907 130 HPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHC--YEHVLRF-RSSVCMVRCSP---- 202 (787)
Q Consensus 130 rpLLavV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~--~v~tL~f-~s~V~sV~~s~---- 202 (787)
..+||..+. +++|+|||+++++ .+.++.. ...|.+|++++
T Consensus 67 g~~l~s~s~---------------------------------D~~v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g 113 (297)
T 2pm7_B 67 GTILASCSY---------------------------------DGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYG 113 (297)
T ss_dssp CSEEEEEET---------------------------------TTEEEEEEBSSSCBCCCEEECCCSSCEEEEEECCGGGC
T ss_pred CCEEEEEcC---------------------------------CCEEEEEEcCCCceEEEEEeecCCCceeEEEeCcCCCC
Confidence 126655331 3699999999874 5566664 46899999987
Q ss_pred CeEEEEe-CCeEEEEECCCCce--eEEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCcceeccccCCC
Q 003907 203 RIVAVGL-ATQIYCFDALTLEN--KFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTP 279 (787)
Q Consensus 203 ~~LaV~~-~~~I~iwD~~T~e~--l~tl~t~p~p~~~~~~~~~~~~~~~~lAlspr~LAyas~~~~l~~~g~~s~q~lt~ 279 (787)
++|+++. ++.|++||+.+.+. ...+..|..+ ...++++|...... +.
T Consensus 114 ~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~-------------v~~~~~~p~~~~~~---------~~-------- 163 (297)
T 2pm7_B 114 PMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIG-------------VNSASWAPATIEED---------GE-------- 163 (297)
T ss_dssp SEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSC-------------EEEEEECCCC-----------------------
T ss_pred cEEEEEECCCcEEEEEecCCCceeeeeeecccCc-------------cceEeecCCccccc---------cc--------
Confidence 3677655 56899999987642 2334444332 23344433110000 00
Q ss_pred CCcCCCcCCCCCceeEeeehhhhhhhhcccceeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECCCC
Q 003907 280 SGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTR 359 (787)
Q Consensus 280 ~~~s~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~ 359 (787)
+ . .+ .....++++..||+|+|||+.++
T Consensus 164 -----------~-----------------~-----------~~--------------~~~~~l~sgs~D~~v~lwd~~~~ 190 (297)
T 2pm7_B 164 -----------H-----------------N-----------GT--------------KESRKFVTGGADNLVKIWKYNSD 190 (297)
T ss_dssp -----------------------------------------------------------CCEEEEEETTSCEEEEEEETT
T ss_pred -----------C-----------------C-----------CC--------------CCcceEEEEcCCCcEEEEEEcCC
Confidence 0 0 00 00012345678999999999876
Q ss_pred c----EEEEeccCCCCeEEEEECCCC---CEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccc
Q 003907 360 A----IISQFKAHTSPISALCFDPSG---TLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSA 432 (787)
Q Consensus 360 ~----~v~~~~aH~~pIsaLaFSpdG---~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a 432 (787)
+ .+..+.+|..+|.+|+|+|++ .+|||+|.|++ |+|||+.... + ......+....+..
T Consensus 191 ~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~-v~iWd~~~~~-----~---------~~~~~~~~~~~~~~ 255 (297)
T 2pm7_B 191 AQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRT-CIIWTQDNEQ-----G---------PWKKTLLKEEKFPD 255 (297)
T ss_dssp TTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSC-EEEEEESSTT-----S---------CCEEEESSSSCCSS
T ss_pred CceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCc-EEEEEeCCCC-----C---------ccceeeeecccCCC
Confidence 5 677899999999999999995 89999999776 9999985310 1 01111221112345
Q ss_pred cEEEEEEccCCCEEEEEeCCCeEEEEeCCCC
Q 003907 433 TIQDICFSHYSQWIAIVSSKGTCHVFVLSPF 463 (787)
Q Consensus 433 ~I~slaFSpDg~~LAs~S~dgTVhIwdl~~~ 463 (787)
.|++++|+|||++||+++.|++|+||+....
T Consensus 256 ~v~~~~~s~~g~~las~~~D~~v~lw~~~~~ 286 (297)
T 2pm7_B 256 VLWRASWSLSGNVLALSGGDNKVTLWKENLE 286 (297)
T ss_dssp CEEEEEECSSSCCEEEEETTSCEEEEEECTT
T ss_pred cEEEEEECCCCCEEEEEcCCCcEEEEEECCC
Confidence 7999999999999999999999999998754
No 10
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=99.93 E-value=3.5e-23 Score=224.59 Aligned_cols=256 Identities=11% Similarity=0.038 Sum_probs=188.8
Q ss_pred CCCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCceeEeeeeccCcEEEEEEecCCCCCCCCCCccccC
Q 003907 52 SEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLH 130 (787)
Q Consensus 52 ~~~~~~~v~wa~Fd~l~~~~~~~~~vL~lG~~~G-~qVWdv~~~~~~~ells~~dg~V~~v~~lP~P~~~~~~d~F~~sr 130 (787)
..+|++.|..+.|.. +++.|++|..+| ++|||+.. ++....+..+...|..+++.|+.
T Consensus 60 l~gH~~~V~~~~~s~-------d~~~l~s~s~Dg~v~vWd~~~-~~~~~~~~~~~~~v~~~~~sp~g------------- 118 (354)
T 2pbi_B 60 LKGHGNKVLCMDWCK-------DKRRIVSSSQDGKVIVWDSFT-TNKEHAVTMPCTWVMACAYAPSG------------- 118 (354)
T ss_dssp EECCSSCEEEEEECT-------TSSEEEEEETTSEEEEEETTT-CCEEEEEECSSSCCCEEEECTTS-------------
T ss_pred ecCCCCeEEEEEECC-------CCCEEEEEeCCCeEEEEECCC-CCcceEEecCCCCEEEEEECCCC-------------
Confidence 567999999999974 356888888887 89999854 55667777888899999998752
Q ss_pred cEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCC------eEEEEEe-CCCcEEEEEecC-
Q 003907 131 PFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSH------CYEHVLR-FRSSVCMVRCSP- 202 (787)
Q Consensus 131 pLLavV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg------~~v~tL~-f~s~V~sV~~s~- 202 (787)
.+||. ++ .++++++|++... .....+. +...|.++.|++
T Consensus 119 ~~las-g~--------------------------------~d~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~ 165 (354)
T 2pbi_B 119 CAIAC-GG--------------------------------LDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNS 165 (354)
T ss_dssp SEEEE-ES--------------------------------TTSEEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEECSS
T ss_pred CEEEE-ee--------------------------------CCCCEEEEEEeccccccccccceeeeccCCcEEEEEEeCC
Confidence 25554 21 1368999998643 2344454 446899999987
Q ss_pred -CeEEEE-eCCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCcceeccccCCCC
Q 003907 203 -RIVAVG-LATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPS 280 (787)
Q Consensus 203 -~~LaV~-~~~~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~~~~~lAlspr~LAyas~~~~l~~~g~~s~q~lt~~ 280 (787)
+.|+++ .++.|++||+.+++.+.++..|..+ ...+++.| +.
T Consensus 166 ~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~-------------v~~~~~~~-------~~----------------- 208 (354)
T 2pbi_B 166 DMQILTASGDGTCALWDVESGQLLQSFHGHGAD-------------VLCLDLAP-------SE----------------- 208 (354)
T ss_dssp SSEEEEEETTSEEEEEETTTCCEEEEEECCSSC-------------EEEEEECC-------CS-----------------
T ss_pred CCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCC-------------eEEEEEEe-------CC-----------------
Confidence 456654 5678999999999998888876542 12223211 10
Q ss_pred CcCCCcCCCCCceeEeeehhhhhhhhcccceeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECCCCc
Q 003907 281 GVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRA 360 (787)
Q Consensus 281 ~~s~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~ 360 (787)
. |. .+++++.||.|++||+.+++
T Consensus 209 --------~-g~------------------------------------------------~l~sgs~Dg~v~~wd~~~~~ 231 (354)
T 2pbi_B 209 --------T-GN------------------------------------------------TFVSGGCDKKAMVWDMRSGQ 231 (354)
T ss_dssp --------S-CC------------------------------------------------EEEEEETTSCEEEEETTTCC
T ss_pred --------C-CC------------------------------------------------EEEEEeCCCeEEEEECCCCc
Confidence 0 00 11244678999999999999
Q ss_pred EEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEc
Q 003907 361 IISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFS 440 (787)
Q Consensus 361 ~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFS 440 (787)
.+..+.+|..+|.+++|+|+|.+|||++.||+ |+|||+.. + ..+..+........+.+++|+
T Consensus 232 ~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~-v~lwd~~~-------~----------~~~~~~~~~~~~~~~~~~~~s 293 (354)
T 2pbi_B 232 CVQAFETHESDVNSVRYYPSGDAFASGSDDAT-CRLYDLRA-------D----------REVAIYSKESIIFGASSVDFS 293 (354)
T ss_dssp EEEEECCCSSCEEEEEECTTSSEEEEEETTSC-EEEEETTT-------T----------EEEEEECCTTCCSCEEEEEEC
T ss_pred EEEEecCCCCCeEEEEEeCCCCEEEEEeCCCe-EEEEECCC-------C----------cEEEEEcCCCcccceeEEEEe
Confidence 99999999999999999999999999999776 99999854 1 234444322222358999999
Q ss_pred cCCCEEEEEeCCCeEEEEeCCCCCCcccccccc
Q 003907 441 HYSQWIAIVSSKGTCHVFVLSPFGGDSGFQTLS 473 (787)
Q Consensus 441 pDg~~LAs~S~dgTVhIwdl~~~gg~~~~~~H~ 473 (787)
|||++|++++.|++|+|||+........+..|.
T Consensus 294 ~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~ 326 (354)
T 2pbi_B 294 LSGRLLFAGYNDYTINVWDVLKGSRVSILFGHE 326 (354)
T ss_dssp TTSSEEEEEETTSCEEEEETTTCSEEEEECCCS
T ss_pred CCCCEEEEEECCCcEEEEECCCCceEEEEECCC
Confidence 999999999999999999997654444455664
No 11
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=99.92 E-value=3.2e-23 Score=241.19 Aligned_cols=336 Identities=14% Similarity=0.092 Sum_probs=205.9
Q ss_pred CCCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCceeEeeeeccCcEEEEEEecCCCCCCCCCCccccC
Q 003907 52 SEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLH 130 (787)
Q Consensus 52 ~~~~~~~v~wa~Fd~l~~~~~~~~~vL~lG~~~G-~qVWdv~~~~~~~ells~~dg~V~~v~~lP~P~~~~~~d~F~~sr 130 (787)
..+|++.|..+.|.. + .+..|++|..++ +++||.. .+++...+..|.+.|.++++.|+.
T Consensus 143 l~gh~~~v~~v~f~p----~--~~~~l~s~s~D~~v~lwd~~-~~~~~~~l~~H~~~V~~v~fspdg------------- 202 (611)
T 1nr0_A 143 LTGQARAMNSVDFKP----S--RPFRIISGSDDNTVAIFEGP-PFKFKSTFGEHTKFVHSVRYNPDG------------- 202 (611)
T ss_dssp CCCCSSCEEEEEECS----S--SSCEEEEEETTSCEEEEETT-TBEEEEEECCCSSCEEEEEECTTS-------------
T ss_pred ecCCCCCceEEEECC----C--CCeEEEEEeCCCeEEEEECC-CCeEeeeeccccCceEEEEECCCC-------------
Confidence 467889999999963 1 133577777765 9999985 466777888999999999999752
Q ss_pred cEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEe--------CCCcEEEEEecC
Q 003907 131 PFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLR--------FRSSVCMVRCSP 202 (787)
Q Consensus 131 pLLavV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~v~tL~--------f~s~V~sV~~s~ 202 (787)
.+||..+. +++|+|||+++++.+.++. +...|.+|+|++
T Consensus 203 ~~las~s~---------------------------------D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~sp 249 (611)
T 1nr0_A 203 SLFASTGG---------------------------------DGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSP 249 (611)
T ss_dssp SEEEEEET---------------------------------TSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECT
T ss_pred CEEEEEEC---------------------------------CCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECC
Confidence 26665332 2589999999999998883 446899999987
Q ss_pred --CeEEEEe-CCeEEEEECCCCceeEEEEecCCcccC---------------------------C---CCccccccccce
Q 003907 203 --RIVAVGL-ATQIYCFDALTLENKFSVLTYPVPQLA---------------------------G---QGAVGINVGYGP 249 (787)
Q Consensus 203 --~~LaV~~-~~~I~iwD~~T~e~l~tl~t~p~p~~~---------------------------~---~~~~~~~~~~~~ 249 (787)
++|+++. ++.|++||+.+++++.++..+...... . ....+-......
T Consensus 250 dg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~ 329 (611)
T 1nr0_A 250 DGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITA 329 (611)
T ss_dssp TSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEE
T ss_pred CCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEE
Confidence 5777655 567999999999887776532110000 0 000000012346
Q ss_pred eEEcc--ceEEEecCCc--eecCc--ceecc---ccCCCCCcCCCcCCCCCceeEeeehhhhhhhhc---ccc-------
Q 003907 250 MAVGP--RWLAYASNTL--LLSNS--GRLSP---QNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAA---GLS------- 310 (787)
Q Consensus 250 lAlsp--r~LAyas~~~--~l~~~--g~~s~---q~lt~~~~s~s~sp~~g~lva~~a~d~sk~la~---G~~------- 310 (787)
++++| ++||.++.+. .+++. +.... +..........++++ +.++ ....|....+.. +..
T Consensus 330 l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~-~~l~-s~s~d~~v~~w~~~~~~~~~~~~~~ 407 (611)
T 1nr0_A 330 LSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSK-GDLF-TVSWDDHLKVVPAGGSGVDSSKAVA 407 (611)
T ss_dssp EEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTT-SCEE-EEETTTEEEEECSSSSSSCTTSCCE
T ss_pred EEEeCCCCEEEEEeCCCcEEEEECCCCceeeecccCCcceEEEEEECCC-CcEE-EEEcCCceEEeecCCccccccceee
Confidence 78888 7888887652 22221 11100 000001111122222 2222 122221111100 000
Q ss_pred eeecccc--cccCCCC--------------------------CCCCcccCCccccccccccccCCCceEEEEECCCCcE-
Q 003907 311 KTLSKYC--QELLPDG--------------------------SSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAI- 361 (787)
Q Consensus 311 ktls~~~--~~l~p~~--------------------------s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~- 361 (787)
..+.... -.+.|++ ....+.++++++ .++.+..||+|+|||+.++..
T Consensus 408 ~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~spdg~----~lasgs~D~~v~lwd~~~~~~~ 483 (611)
T 1nr0_A 408 NKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQ----FVAVGGQDSKVHVYKLSGASVS 483 (611)
T ss_dssp EECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSC----EEEEEETTSEEEEEEEETTEEE
T ss_pred eecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEEEEeCCCC----EEEEeCCCCeEEEEEccCCcee
Confidence 0000000 0001111 112334444443 356788999999999987653
Q ss_pred -EEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEc
Q 003907 362 -ISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFS 440 (787)
Q Consensus 362 -v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFS 440 (787)
+.. .+|..+|.+|+|||||++||+++.|++ |++||+... + ..+.....+.|...|.+++||
T Consensus 484 ~~~~-~~h~~~v~~v~fspdg~~las~s~d~~-v~~w~~~~~------~----------~~~~~~~~~~H~~~V~~v~fs 545 (611)
T 1nr0_A 484 EVKT-IVHPAEITSVAFSNNGAFLVATDQSRK-VIPYSVANN------F----------ELAHTNSWTFHTAKVACVSWS 545 (611)
T ss_dssp EEEE-EECSSCEEEEEECTTSSEEEEEETTSC-EEEEEGGGT------T----------EESCCCCCCCCSSCEEEEEEC
T ss_pred eeec-cCCCCceEEEEECCCCCEEEEEcCCCC-EEEEEcCCC------C----------ceeeeeeeeecccceeEEEEC
Confidence 334 689999999999999999999999776 999998531 1 111110122245679999999
Q ss_pred cCCCEEEEEeCCCeEEEEeCCCCC
Q 003907 441 HYSQWIAIVSSKGTCHVFVLSPFG 464 (787)
Q Consensus 441 pDg~~LAs~S~dgTVhIwdl~~~g 464 (787)
|||++||++|.|++|+||+++...
T Consensus 546 pdg~~lasgs~D~~v~lW~~~~~~ 569 (611)
T 1nr0_A 546 PDNVRLATGSLDNSVIVWNMNKPS 569 (611)
T ss_dssp TTSSEEEEEETTSCEEEEETTCTT
T ss_pred CCCCEEEEEECCCcEEEEECCCcc
Confidence 999999999999999999998654
No 12
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=99.92 E-value=2.1e-22 Score=216.36 Aligned_cols=236 Identities=12% Similarity=0.100 Sum_probs=176.0
Q ss_pred CCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCC---ceeEeeeeccCcEEEEEEecCCCCCCCCCCcccc
Q 003907 54 DLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDAS---NFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKL 129 (787)
Q Consensus 54 ~~~~~v~wa~Fd~l~~~~~~~~~vL~lG~~~G-~qVWdv~~~~---~~~ells~~dg~V~~v~~lP~P~~~~~~d~F~~s 129 (787)
.+...|..+.|.. +++.|++|..+| ++|||+.... .+...+..|.+.|.++.+.|+ .
T Consensus 95 ~~~~~v~~~~~s~-------~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~------------~ 155 (340)
T 1got_B 95 LRSSWVMTCAYAP-------SGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDD------------N 155 (340)
T ss_dssp CSSSCEEEEEECT-------TSSEEEEEETTCEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEET------------T
T ss_pred cCCccEEEEEECC-------CCCEEEEEeCCCeEEEEECccCCCcceeEEEecCCCccEEEEEECCC------------C
Confidence 3556677777753 356788887776 8999996532 234456778899999998863 1
Q ss_pred CcEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCC-CcEEEEEecC--CeEE
Q 003907 130 HPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFR-SSVCMVRCSP--RIVA 206 (787)
Q Consensus 130 rpLLavV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~v~tL~f~-s~V~sV~~s~--~~La 206 (787)
.|+..+. +++|++||+++++.+.++..+ ..|.++++++ ++|+
T Consensus 156 --~l~s~s~---------------------------------d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~ 200 (340)
T 1got_B 156 --QIVTSSG---------------------------------DTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFV 200 (340)
T ss_dssp --EEEEEET---------------------------------TSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEE
T ss_pred --cEEEEEC---------------------------------CCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCEEE
Confidence 3443221 258999999999999999855 6899999988 5677
Q ss_pred EEe-CCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCcceeccccCCCCCcCCC
Q 003907 207 VGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPS 285 (787)
Q Consensus 207 V~~-~~~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~~~~~lAlspr~LAyas~~~~l~~~g~~s~q~lt~~~~s~s 285 (787)
++. ++.|++||+.+++...++..|..+ ...++++| +.
T Consensus 201 sg~~d~~v~~wd~~~~~~~~~~~~h~~~-------------v~~v~~~p-------~~---------------------- 238 (340)
T 1got_B 201 SGACDASAKLWDVREGMCRQTFTGHESD-------------INAICFFP-------NG---------------------- 238 (340)
T ss_dssp EEETTSCEEEEETTTCSEEEEECCCSSC-------------EEEEEECT-------TS----------------------
T ss_pred EEeCCCcEEEEECCCCeeEEEEcCCcCC-------------EEEEEEcC-------CC----------------------
Confidence 655 668999999999988887766542 23344433 10
Q ss_pred cCCCCCceeEeeehhhhhhhhcccceeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECCCCcEEEEe
Q 003907 286 TSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQF 365 (787)
Q Consensus 286 ~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~v~~~ 365 (787)
. .+++++.||+|+|||+.+++.+..+
T Consensus 239 -----~-------------------------------------------------~l~s~s~d~~v~iwd~~~~~~~~~~ 264 (340)
T 1got_B 239 -----N-------------------------------------------------AFATGSDDATCRLFDLRADQELMTY 264 (340)
T ss_dssp -----S-------------------------------------------------EEEEEETTSCEEEEETTTTEEEEEE
T ss_pred -----C-------------------------------------------------EEEEEcCCCcEEEEECCCCcEEEEE
Confidence 0 0123456899999999998887777
Q ss_pred cc--CCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCC
Q 003907 366 KA--HTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYS 443 (787)
Q Consensus 366 ~a--H~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg 443 (787)
.. |...|.+++|+|+|++|++++.|| .|+|||+.. + ..+..+. | +...|.+++|+|||
T Consensus 265 ~~~~~~~~v~~~~~s~~g~~l~~g~~d~-~i~vwd~~~-------~----------~~~~~~~-~-h~~~v~~~~~s~dg 324 (340)
T 1got_B 265 SHDNIICGITSVSFSKSGRLLLAGYDDF-NCNVWDALK-------A----------DRAGVLA-G-HDNRVSCLGVTDDG 324 (340)
T ss_dssp CCTTCCSCEEEEEECTTSSEEEEEETTS-EEEEEETTT-------C----------CEEEEEE-C-CSSCEEEEEECTTS
T ss_pred ccCCcccceEEEEECCCCCEEEEECCCC-eEEEEEccc-------C----------cEeeEee-c-CCCcEEEEEEcCCC
Confidence 53 345899999999999999999966 499999854 2 3555554 4 34579999999999
Q ss_pred CEEEEEeCCCeEEEEe
Q 003907 444 QWIAIVSSKGTCHVFV 459 (787)
Q Consensus 444 ~~LAs~S~dgTVhIwd 459 (787)
++||+++.|++|+|||
T Consensus 325 ~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 325 MAVATGSWDSFLKIWN 340 (340)
T ss_dssp SCEEEEETTSCEEEEC
T ss_pred CEEEEEcCCccEEecC
Confidence 9999999999999996
No 13
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=99.92 E-value=3e-22 Score=213.57 Aligned_cols=238 Identities=11% Similarity=0.152 Sum_probs=177.1
Q ss_pred CCCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCceeEeeeeccCcEEEEEEecCCCCCCCCCCccccC
Q 003907 52 SEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLH 130 (787)
Q Consensus 52 ~~~~~~~v~wa~Fd~l~~~~~~~~~vL~lG~~~G-~qVWdv~~~~~~~ells~~dg~V~~v~~lP~P~~~~~~d~F~~sr 130 (787)
..+|++.|..+.|.. +++.|++|..+| ++|||+.. ++....+..|.++|..+.+.|+.
T Consensus 61 ~~~h~~~v~~~~~s~-------dg~~l~s~s~D~~v~~wd~~~-~~~~~~~~~h~~~v~~~~~~~~~------------- 119 (319)
T 3frx_A 61 FKGHSHIVQDCTLTA-------DGAYALSASWDKTLRLWDVAT-GETYQRFVGHKSDVMSVDIDKKA------------- 119 (319)
T ss_dssp EECCSSCEEEEEECT-------TSSEEEEEETTSEEEEEETTT-TEEEEEEECCSSCEEEEEECTTS-------------
T ss_pred EeCCcccEEEEEECC-------CCCEEEEEeCCCEEEEEECCC-CCeeEEEccCCCcEEEEEEcCCC-------------
Confidence 457888888888863 367888888776 99999964 66777788899999999998642
Q ss_pred cEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEe-CCCcEEEEEecCC------
Q 003907 131 PFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLR-FRSSVCMVRCSPR------ 203 (787)
Q Consensus 131 pLLavV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~v~tL~-f~s~V~sV~~s~~------ 203 (787)
.+|+..+. +++|++||++ ++++.++. +...|..+++.+.
T Consensus 120 ~~l~s~s~---------------------------------D~~i~vwd~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~~ 165 (319)
T 3frx_A 120 SMIISGSR---------------------------------DKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDD 165 (319)
T ss_dssp CEEEEEET---------------------------------TSCEEEEETT-SCEEEEECCCSSCEEEEEECCC------
T ss_pred CEEEEEeC---------------------------------CCeEEEEECC-CCeEEEEeccCCcEEEEEEccCCCCCCC
Confidence 25654221 2689999997 45666665 4468999999872
Q ss_pred --eEEEE-eCCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEcc--ceEEEecCCceecCcceeccccCC
Q 003907 204 --IVAVG-LATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP--RWLAYASNTLLLSNSGRLSPQNLT 278 (787)
Q Consensus 204 --~LaV~-~~~~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~~~~~lAlsp--r~LAyas~~~~l~~~g~~s~q~lt 278 (787)
.|+++ .++.|++||+.+++...++..|..+ ...++++| ++|
T Consensus 166 ~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~-------------v~~~~~sp~g~~l--------------------- 211 (319)
T 3frx_A 166 SVTIISAGNDKMVKAWNLNQFQIEADFIGHNSN-------------INTLTASPDGTLI--------------------- 211 (319)
T ss_dssp CCEEEEEETTSCEEEEETTTTEEEEEECCCCSC-------------EEEEEECTTSSEE---------------------
T ss_pred ccEEEEEeCCCEEEEEECCcchhheeecCCCCc-------------EEEEEEcCCCCEE---------------------
Confidence 55654 4668999999999877777666542 22344433 111
Q ss_pred CCCcCCCcCCCCCceeEeeehhhhhhhhcccceeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECCC
Q 003907 279 PSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVT 358 (787)
Q Consensus 279 ~~~~s~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s 358 (787)
++++.||+|+|||+.+
T Consensus 212 ----------------------------------------------------------------~s~~~dg~i~iwd~~~ 227 (319)
T 3frx_A 212 ----------------------------------------------------------------ASAGKDGEIMLWNLAA 227 (319)
T ss_dssp ----------------------------------------------------------------EEEETTCEEEEEETTT
T ss_pred ----------------------------------------------------------------EEEeCCCeEEEEECCC
Confidence 2345689999999999
Q ss_pred CcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecc------cccc
Q 003907 359 RAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRG------ITSA 432 (787)
Q Consensus 359 ~~~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG------~~~a 432 (787)
++.+..+..| .+|.+++|+|+|.+||+++.+ .|+||++.+. ..+..++.. .+..
T Consensus 228 ~~~~~~~~~~-~~v~~~~~sp~~~~la~~~~~--~i~v~~~~~~-----------------~~~~~~~~~~~~~~~~~~~ 287 (319)
T 3frx_A 228 KKAMYTLSAQ-DEVFSLAFSPNRYWLAAATAT--GIKVFSLDPQ-----------------YLVDDLRPEFAGYSKAAEP 287 (319)
T ss_dssp TEEEEEEECC-SCEEEEEECSSSSEEEEEETT--EEEEEEETTE-----------------EEEEEECCCCTTCCGGGCC
T ss_pred CcEEEEecCC-CcEEEEEEcCCCCEEEEEcCC--CcEEEEeCcC-----------------eeeeccCccccccccCcCc
Confidence 9999998865 689999999999999998863 3999998541 233344321 1123
Q ss_pred cEEEEEEccCCCEEEEEeCCCeEEEEeCCC
Q 003907 433 TIQDICFSHYSQWIAIVSSKGTCHVFVLSP 462 (787)
Q Consensus 433 ~I~slaFSpDg~~LAs~S~dgTVhIwdl~~ 462 (787)
.|.+++|||||++|++++.|++|+||++.+
T Consensus 288 ~v~~~~~spdg~~l~sg~~Dg~i~vWd~~t 317 (319)
T 3frx_A 288 HAVSLAWSADGQTLFAGYTDNVIRVWQVMT 317 (319)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEEEEE
T ss_pred ceeEEEECCCCCEEEEeecCceEEEEEEee
Confidence 589999999999999999999999999864
No 14
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=99.92 E-value=5.7e-22 Score=211.42 Aligned_cols=246 Identities=17% Similarity=0.164 Sum_probs=181.2
Q ss_pred CCCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCC----ceeEeeeeccCcEEEEEEecCCCCCCCCCCc
Q 003907 52 SEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDAS----NFNELVSKRDGPVSFLQMQPFPVKDDGCEGF 126 (787)
Q Consensus 52 ~~~~~~~v~wa~Fd~l~~~~~~~~~vL~lG~~~G-~qVWdv~~~~----~~~ells~~dg~V~~v~~lP~P~~~~~~d~F 126 (787)
.++|++.|..+.|.. ..+++|++|..+| ++|||+.... .....+..|.++|..+.+.|+.
T Consensus 13 l~gH~~~V~~l~~~~------~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg--------- 77 (319)
T 3frx_A 13 LEGHNGWVTSLATSA------GQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADG--------- 77 (319)
T ss_dssp ECCCSSCEEEEEECS------SCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTS---------
T ss_pred EccccceEEEEEccC------CCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCC---------
Confidence 578999999999963 1246788888776 9999996432 1234577889999999998742
Q ss_pred cccCcEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCC-CcEEEEEecC--C
Q 003907 127 RKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFR-SSVCMVRCSP--R 203 (787)
Q Consensus 127 ~~srpLLavV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~v~tL~f~-s~V~sV~~s~--~ 203 (787)
.+|+..+. +++|+|||+++++.+.++..+ ..|.+|++++ +
T Consensus 78 ----~~l~s~s~---------------------------------D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~ 120 (319)
T 3frx_A 78 ----AYALSASW---------------------------------DKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKAS 120 (319)
T ss_dssp ----SEEEEEET---------------------------------TSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSC
T ss_pred ----CEEEEEeC---------------------------------CCEEEEEECCCCCeeEEEccCCCcEEEEEEcCCCC
Confidence 26654321 369999999999999999755 6899999987 5
Q ss_pred eEEEEe-CCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCcceeccccCCCCCc
Q 003907 204 IVAVGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGV 282 (787)
Q Consensus 204 ~LaV~~-~~~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~~~~~lAlspr~LAyas~~~~l~~~g~~s~q~lt~~~~ 282 (787)
+|+++. ++.|++||+. ++.+.++..|..+ ...+++.| ... .
T Consensus 121 ~l~s~s~D~~i~vwd~~-~~~~~~~~~h~~~-------------v~~~~~~~-------~~~-------~---------- 162 (319)
T 3frx_A 121 MIISGSRDKTIKVWTIK-GQCLATLLGHNDW-------------VSQVRVVP-------NEK-------A---------- 162 (319)
T ss_dssp EEEEEETTSCEEEEETT-SCEEEEECCCSSC-------------EEEEEECC-------C--------------------
T ss_pred EEEEEeCCCeEEEEECC-CCeEEEEeccCCc-------------EEEEEEcc-------CCC-------C----------
Confidence 677655 5689999986 4556666555432 11222211 100 0
Q ss_pred CCCcCCCCCceeEeeehhhhhhhhcccceeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECCCCcEE
Q 003907 283 SPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAII 362 (787)
Q Consensus 283 s~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~v 362 (787)
. . ....++++..||+|++||+.+.+..
T Consensus 163 ----~-~------------------------------------------------~~~~l~s~~~d~~i~~wd~~~~~~~ 189 (319)
T 3frx_A 163 ----D-D------------------------------------------------DSVTIISAGNDKMVKAWNLNQFQIE 189 (319)
T ss_dssp --------------------------------------------------------CCEEEEEETTSCEEEEETTTTEEE
T ss_pred ----C-C------------------------------------------------CccEEEEEeCCCEEEEEECCcchhh
Confidence 0 0 0001234567999999999999999
Q ss_pred EEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccC
Q 003907 363 SQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHY 442 (787)
Q Consensus 363 ~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpD 442 (787)
..+.+|..+|.+++|+|+|++|||++.||+ |+|||+.. + ..++.+.. ...|.+++|+||
T Consensus 190 ~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~-i~iwd~~~-------~----------~~~~~~~~---~~~v~~~~~sp~ 248 (319)
T 3frx_A 190 ADFIGHNSNINTLTASPDGTLIASAGKDGE-IMLWNLAA-------K----------KAMYTLSA---QDEVFSLAFSPN 248 (319)
T ss_dssp EEECCCCSCEEEEEECTTSSEEEEEETTCE-EEEEETTT-------T----------EEEEEEEC---CSCEEEEEECSS
T ss_pred eeecCCCCcEEEEEEcCCCCEEEEEeCCCe-EEEEECCC-------C----------cEEEEecC---CCcEEEEEEcCC
Confidence 999999999999999999999999999664 99999854 2 45666642 346999999999
Q ss_pred CCEEEEEeCCCeEEEEeCCC
Q 003907 443 SQWIAIVSSKGTCHVFVLSP 462 (787)
Q Consensus 443 g~~LAs~S~dgTVhIwdl~~ 462 (787)
+++|++++.+ .++||++++
T Consensus 249 ~~~la~~~~~-~i~v~~~~~ 267 (319)
T 3frx_A 249 RYWLAAATAT-GIKVFSLDP 267 (319)
T ss_dssp SSEEEEEETT-EEEEEEETT
T ss_pred CCEEEEEcCC-CcEEEEeCc
Confidence 9999998865 599999875
No 15
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=99.92 E-value=3.6e-22 Score=218.17 Aligned_cols=276 Identities=11% Similarity=0.071 Sum_probs=187.8
Q ss_pred CCCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCceeEeeeeccCcEEEEEEecCCCCCCCCCCccccC
Q 003907 52 SEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLH 130 (787)
Q Consensus 52 ~~~~~~~v~wa~Fd~l~~~~~~~~~vL~lG~~~G-~qVWdv~~~~~~~ells~~dg~V~~v~~lP~P~~~~~~d~F~~sr 130 (787)
..+|++.|..+.|.. +++.|++|..+| ++|||+.. ++....+..|...|..+++.|+.
T Consensus 62 l~gH~~~V~~~~~sp-------~~~~l~s~s~D~~v~iWd~~~-~~~~~~~~~h~~~v~~~~~s~~g------------- 120 (380)
T 3iz6_a 62 LQGHSGKVYSLDWTP-------EKNWIVSASQDGRLIVWNALT-SQKTHAIKLHCPWVMECAFAPNG------------- 120 (380)
T ss_dssp ECCCSSCEEEEEECT-------TSSCEEEEETTSEEEEEETTT-TEEEEEEECCCTTCCCCEECTTS-------------
T ss_pred ccccccEEEEEEEcC-------CCCEEEEEeCCCeEEEEECCC-CccceEEecCCCCEEEEEECCCC-------------
Confidence 567999999999963 356788888877 99999954 66667788899999999998752
Q ss_pred cEEEEEEcCCCCC-----CC---CC------CCcCCCCCcccCCcCCCCCCC---CCCCCEEEEEECCCCeEEEEEe---
Q 003907 131 PFLLVVAGEDTNT-----LA---PG------QNRSHLGGVRDGMMDSQSGNC---VNSPTAVRFYSFQSHCYEHVLR--- 190 (787)
Q Consensus 131 pLLavV~~d~~~~-----~~---~~------~~~~~~~~~r~g~~~~~~~~~---~~~p~tVrlWdlktg~~v~tL~--- 190 (787)
.+||..+.|+... .. .. ...+|.+.+..-.+.+..+.. ...+++|++||+++++.+..+.
T Consensus 121 ~~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~ 200 (380)
T 3iz6_a 121 QSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEF 200 (380)
T ss_dssp SEEEECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCS
T ss_pred CEEEEeeCCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeeccc
Confidence 2555422221100 00 00 001111112111111111111 1246899999999999998883
Q ss_pred ---CCCcEEEEEecC---CeEEEEe-CCeEEEEECC-CCceeEEEEecCCcccCCCCccccccccceeEEccceEEEecC
Q 003907 191 ---FRSSVCMVRCSP---RIVAVGL-ATQIYCFDAL-TLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASN 262 (787)
Q Consensus 191 ---f~s~V~sV~~s~---~~LaV~~-~~~I~iwD~~-T~e~l~tl~t~p~p~~~~~~~~~~~~~~~~lAlspr~LAyas~ 262 (787)
+...|.++.+++ ++|+++. ++.|++||+. +.+.+.++.+|..+ ...++++| +
T Consensus 201 ~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~-------------v~~v~~~p-------~ 260 (380)
T 3iz6_a 201 PSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGD-------------INSVKFFP-------D 260 (380)
T ss_dssp SSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSC-------------CCEEEECT-------T
T ss_pred CCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCC-------------eEEEEEec-------C
Confidence 235799999965 6777755 6689999997 44556666655442 23344433 1
Q ss_pred CceecCcceeccccCCCCCcCCCcCCCCCceeEeeehhhhhhhhcccceeecccccccCCCCCCCCcccCCccccccccc
Q 003907 263 TLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAG 342 (787)
Q Consensus 263 ~~~l~~~g~~s~q~lt~~~~s~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~ 342 (787)
. . .+
T Consensus 261 ~---------------------------~-------------------------------------------------~l 264 (380)
T 3iz6_a 261 G---------------------------Q-------------------------------------------------RF 264 (380)
T ss_dssp S---------------------------S-------------------------------------------------EE
T ss_pred C---------------------------C-------------------------------------------------eE
Confidence 0 0 01
Q ss_pred cccCCCceEEEEECCCCcEEEEeccCCC-------CeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCcccc
Q 003907 343 ADMDNAGIVVVKDFVTRAIISQFKAHTS-------PISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDW 415 (787)
Q Consensus 343 ~s~~~dG~V~IwDl~s~~~v~~~~aH~~-------pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~ 415 (787)
++++.||+|+|||+.+++.+..+..|.. .|.+++|+|+|++|++++.||. |+|||+.. +
T Consensus 265 ~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~-i~vwd~~~-------~------ 330 (380)
T 3iz6_a 265 GTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGD-CYVWDTLL-------A------ 330 (380)
T ss_dssp EEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSC-EEEEETTT-------C------
T ss_pred EEEcCCCeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEECCCC-EEEEECCC-------C------
Confidence 2345689999999999998888876533 4899999999999999999776 99999853 2
Q ss_pred CCcceEEEEEe---cccccccEEEEEEccCCCEEEEEeCCCeEEEEeCCCC
Q 003907 416 NSSHVHLYKLH---RGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPF 463 (787)
Q Consensus 416 ~~s~~~l~~l~---rG~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~~~ 463 (787)
..+..+. .+ +...|.+++|||||++|+++|.|++|+||++...
T Consensus 331 ----~~~~~~~~~~~~-h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~~~ 376 (380)
T 3iz6_a 331 ----EMVLNLGTLQNS-HEGRISCLGLSSDGSALCTGSWDKNLKIWAFSGH 376 (380)
T ss_dssp ----CEEEEECCSCSS-CCCCCCEEEECSSSSEEEEECTTSCEEEEECCSS
T ss_pred ----ceEEEEecccCC-CCCceEEEEECCCCCEEEEeeCCCCEEEEecCCC
Confidence 3444442 23 4457999999999999999999999999998753
No 16
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=99.91 E-value=2.2e-22 Score=228.71 Aligned_cols=303 Identities=18% Similarity=0.197 Sum_probs=205.7
Q ss_pred CCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCceeEeeeeccCcEEEEEEecCCCCCCCCCCccccCc
Q 003907 53 EDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHP 131 (787)
Q Consensus 53 ~~~~~~v~wa~Fd~l~~~~~~~~~vL~lG~~~G-~qVWdv~~~~~~~ells~~dg~V~~v~~lP~P~~~~~~d~F~~srp 131 (787)
.++...|..+.|.. +++.|++|..++ +++||. .+++.+.+..|.++|..+.+.|+. .
T Consensus 259 ~~~~~~v~~v~~~~-------d~~~l~~~~~d~~i~~w~~--~~~~~~~~~~h~~~v~~~~~~~~~-------------~ 316 (577)
T 2ymu_A 259 TGHSSSVNGVAFRP-------DGQTIASASDDKTVKLWNR--NGQLLQTLTGHSSSVWGVAFSPDG-------------Q 316 (577)
T ss_dssp CCCSSCEEEEEECT-------TSSEEEEEETTSCEEEEET--TSCEEEEECCCSSCEEEEEECTTS-------------S
T ss_pred ecCCCCEEEEEEcC-------CCCEEEEEeCCCEEEEEeC--CCcEEEEEecCCCCeEEEEECCCC-------------C
Confidence 34566677777742 366788887776 999997 356777888899999999998742 2
Q ss_pred EEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEe-CCCcEEEEEecC--CeEEEE
Q 003907 132 FLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLR-FRSSVCMVRCSP--RIVAVG 208 (787)
Q Consensus 132 LLavV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~v~tL~-f~s~V~sV~~s~--~~LaV~ 208 (787)
+|+..+. +++|++||+... .+..+. +...|.++++++ +.|+++
T Consensus 317 ~l~t~~~---------------------------------d~~i~~w~~~~~-~~~~~~~~~~~v~~~~~s~~g~~l~~~ 362 (577)
T 2ymu_A 317 TIASASD---------------------------------DKTVKLWNRNGQ-HLQTLTGHSSSVWGVAFSPDGQTIASA 362 (577)
T ss_dssp EEEEEET---------------------------------TSCEEEEETTSC-EEEEECCCSSCEEEEEECTTSSEEEEE
T ss_pred EEEEEeC---------------------------------CCeEEEEeCCCC-eeEEEeCCCCCEEEEEECCCCCEEEEE
Confidence 6654321 258999998654 455565 456899999987 678877
Q ss_pred eC-CeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEcc--ceEEEecCCc--eecCc-ceeccccCC---C
Q 003907 209 LA-TQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP--RWLAYASNTL--LLSNS-GRLSPQNLT---P 279 (787)
Q Consensus 209 ~~-~~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~~~~~lAlsp--r~LAyas~~~--~l~~~-g~~s~q~lt---~ 279 (787)
.. +.|++||. +++.+.++..|..+ ...++++| ++||+++.+. .+++. +.. .+.+. .
T Consensus 363 ~~dg~v~~~~~-~~~~~~~~~~~~~~-------------v~~~~~s~dg~~l~~~~~d~~v~~~~~~~~~-~~~~~~~~~ 427 (577)
T 2ymu_A 363 SDDKTVKLWNR-NGQLLQTLTGHSSS-------------VRGVAFSPDGQTIASASDDKTVKLWNRNGQL-LQTLTGHSS 427 (577)
T ss_dssp ETTSEEEEEET-TCCEEEEEECCSSC-------------EEEEEECTTSSCEEEEETTSEEEEECTTCCE-EEEEECCSS
T ss_pred eCCCEEEEEcC-CCCEEEEecCCCCC-------------eEEEEECCCCCEEEEEeCCCEEEEEeCCCCE-EEEecCCCC
Confidence 64 57999995 67778888766543 35688888 7899887653 23321 111 11111 1
Q ss_pred CCcCCCcCCCCCceeEeeehhhhhhhh---cccceeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEEC
Q 003907 280 SGVSPSTSPGGSSLVARYAMEHSKQFA---AGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDF 356 (787)
Q Consensus 280 ~~~s~s~sp~~g~lva~~a~d~sk~la---~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl 356 (787)
......++|++..++. ...|....+. ....+++.++ ......+.++++.+ .++.+..||.|+|||.
T Consensus 428 ~v~~~~~s~d~~~l~~-~~~d~~v~~w~~~~~~~~~~~~~------~~~v~~~~~spd~~----~las~~~d~~i~iw~~ 496 (577)
T 2ymu_A 428 SVWGVAFSPDDQTIAS-ASDDKTVKLWNRNGQLLQTLTGH------SSSVRGVAFSPDGQ----TIASASDDKTVKLWNR 496 (577)
T ss_dssp CEEEEEECTTSSEEEE-EETTSEEEEEETTSCEEEEEECC------SSCEEEEEECTTSC----EEEEEETTSEEEEEET
T ss_pred CeEEEEECCCCCEEEE-EcCCCEEEEEECCCCEEEEEcCC------CCCEEEEEEcCCCC----EEEEEeCCCEEEEEcC
Confidence 2223345666554432 2233221111 1111222211 11223344555444 3456788999999995
Q ss_pred CCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEE
Q 003907 357 VTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQD 436 (787)
Q Consensus 357 ~s~~~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~s 436 (787)
+++.+..+.+|..+|++|+|+|||++|||++.|| .|+|||.. | ..+..+. | |...|++
T Consensus 497 -~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg-~v~lwd~~--------~----------~~~~~~~-~-h~~~v~~ 554 (577)
T 2ymu_A 497 -NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDK-TVKLWNRN--------G----------QLLQTLT-G-HSSSVWG 554 (577)
T ss_dssp -TSCEEEEEECCSSCEEEEEECTTSSCEEEEETTS-EEEEECTT--------S----------CEEEEEE-C-CSSCEEE
T ss_pred -CCCEEEEEeCCCCCEEEEEEcCCCCEEEEEECcC-EEEEEeCC--------C----------CEEEEEc-C-CCCCEEE
Confidence 6788999999999999999999999999999966 59999962 3 3566664 4 3467999
Q ss_pred EEEccCCCEEEEEeCCCeEEEEe
Q 003907 437 ICFSHYSQWIAIVSSKGTCHVFV 459 (787)
Q Consensus 437 laFSpDg~~LAs~S~dgTVhIwd 459 (787)
|+|+|||++|++++.|++|+|||
T Consensus 555 ~~fs~dg~~l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 555 VAFSPDGQTIASASSDKTVKLWN 577 (577)
T ss_dssp EEECTTSSCEEEEETTSCEEEEC
T ss_pred EEEcCCCCEEEEEeCCCEEEEeC
Confidence 99999999999999999999997
No 17
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=99.91 E-value=1.2e-22 Score=217.76 Aligned_cols=258 Identities=18% Similarity=0.132 Sum_probs=178.6
Q ss_pred eEeeeeccCcEEEEEEecCCCCCCCCCCccccCcEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEE
Q 003907 98 NELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRF 177 (787)
Q Consensus 98 ~ells~~dg~V~~v~~lP~P~~~~~~d~F~~srpLLavV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVrl 177 (787)
.+.+..|+++|.+|++.|+.. ....+|+..+. +++|+|
T Consensus 25 ~~~~~~H~~~V~~v~~~~~~~---------~~~~~l~tgs~---------------------------------D~~v~v 62 (321)
T 3ow8_A 25 FKQEQAHDDAIWSVAWGTNKK---------ENSETVVTGSL---------------------------------DDLVKV 62 (321)
T ss_dssp EEETTSSSSCEEEEEEC----------------CEEEEEET---------------------------------TSCEEE
T ss_pred eeecccCCCcEEEEEEecCCC---------CCCCEEEEEcC---------------------------------CCCEEE
Confidence 344567899999999987531 11225554221 368999
Q ss_pred EECCCCeEEE--EEeCC-CcEEEEEecC--CeEEEEe-CCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeE
Q 003907 178 YSFQSHCYEH--VLRFR-SSVCMVRCSP--RIVAVGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMA 251 (787)
Q Consensus 178 Wdlktg~~v~--tL~f~-s~V~sV~~s~--~~LaV~~-~~~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~~~~~lA 251 (787)
||+.+++... +++.+ ..|.++++++ .+++++. ++.|++||+.+++.+.++..++.. ...++
T Consensus 63 W~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~~~~~~~~~~~~~~~-------------~~~~~ 129 (321)
T 3ow8_A 63 WKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVD-------------AWTLA 129 (321)
T ss_dssp EEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTC-------------CCCEE
T ss_pred EECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCCEEEEEeCCCcc-------------EEEEE
Confidence 9998876543 45544 5899999988 5666654 678999999999998888765542 24588
Q ss_pred Ecc--ceEEEecCCceecCcceeccccCCCCCcCCCcCCCCCceeEeeehhhhhhhhcccceeecccccccCCCCCCCCc
Q 003907 252 VGP--RWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPV 329 (787)
Q Consensus 252 lsp--r~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~~ 329 (787)
++| ++||+++.+..+ ..|+..+. ... ..+.. .......+
T Consensus 130 ~spdg~~l~~g~~dg~v-----~i~~~~~~------------~~~----------------~~~~~------~~~~v~~~ 170 (321)
T 3ow8_A 130 FSPDSQYLATGTHVGKV-----NIFGVESG------------KKE----------------YSLDT------RGKFILSI 170 (321)
T ss_dssp ECTTSSEEEEECTTSEE-----EEEETTTC------------SEE----------------EEEEC------SSSCEEEE
T ss_pred ECCCCCEEEEEcCCCcE-----EEEEcCCC------------cee----------------EEecC------CCceEEEE
Confidence 888 789888765211 11221111 000 00000 00011122
Q ss_pred ccCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCC
Q 003907 330 SPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSG 409 (787)
Q Consensus 330 s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g 409 (787)
.++++.+ .++.+..||.|+|||+.+++.+..+.+|..+|.+++|+|+|++||+++.||+ |+|||+.. +
T Consensus 171 ~~spdg~----~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~-i~iwd~~~-------~ 238 (321)
T 3ow8_A 171 AYSPDGK----YLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGY-IKIYDVQH-------A 238 (321)
T ss_dssp EECTTSS----EEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSC-EEEEETTT-------C
T ss_pred EECCCCC----EEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCe-EEEEECCC-------c
Confidence 3333333 3456788999999999999999999999999999999999999999999776 99999854 2
Q ss_pred CCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEeCCCCCCcccccccc
Q 003907 410 NHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQTLS 473 (787)
Q Consensus 410 ~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~~~gg~~~~~~H~ 473 (787)
..+..+. | +...|.+++|+||+++|++++.|++|+|||+........+..|.
T Consensus 239 ----------~~~~~~~-~-h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~ 290 (321)
T 3ow8_A 239 ----------NLAGTLS-G-HASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQ 290 (321)
T ss_dssp ----------CEEEEEC-C-CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCS
T ss_pred ----------ceeEEEc-C-CCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcCCC
Confidence 3455553 4 34579999999999999999999999999998765555555664
No 18
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=99.91 E-value=3.1e-22 Score=219.68 Aligned_cols=262 Identities=15% Similarity=0.126 Sum_probs=180.2
Q ss_pred CCCCcEEEEEEeeccCCCCCCCeEEEEEecCcEEEEEccCCCceeEeeeecc------------------CcEEEEEEec
Q 003907 54 DLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNGFQVLDVEDASNFNELVSKRD------------------GPVSFLQMQP 115 (787)
Q Consensus 54 ~~~~~v~wa~Fd~l~~~~~~~~~vL~lG~~~G~qVWdv~~~~~~~ells~~d------------------g~V~~v~~lP 115 (787)
+|++.|..+.|.. +++.|++|.++.++||++.. ++....+..+. ..|.++++.|
T Consensus 62 ~h~~~V~~v~fsp-------dg~~la~g~~~~v~i~~~~~-g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~ 133 (393)
T 1erj_A 62 DHTSVVCCVKFSN-------DGEYLATGCNKTTQVYRVSD-GSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSP 133 (393)
T ss_dssp ECSSCCCEEEECT-------TSSEEEEECBSCEEEEETTT-CCEEEEECC-----------------CCCCBEEEEEECT
T ss_pred CCCCEEEEEEECC-------CCCEEEEEcCCcEEEEEecC-CCEEEEecCccccccccccccccccCCCceeEEEEEECC
Confidence 4778888888863 47799999988899999965 55544444332 2488888876
Q ss_pred CCCCCCCCCCccccCcEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCC-Cc
Q 003907 116 FPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFR-SS 194 (787)
Q Consensus 116 ~P~~~~~~d~F~~srpLLavV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~v~tL~f~-s~ 194 (787)
+. .+||+.+. +++|++||+.+++.+..++.+ ..
T Consensus 134 dg-------------~~l~s~~~---------------------------------d~~i~iwd~~~~~~~~~~~~h~~~ 167 (393)
T 1erj_A 134 DG-------------KFLATGAE---------------------------------DRLIRIWDIENRKIVMILQGHEQD 167 (393)
T ss_dssp TS-------------SEEEEEET---------------------------------TSCEEEEETTTTEEEEEECCCSSC
T ss_pred CC-------------CEEEEEcC---------------------------------CCeEEEEECCCCcEEEEEccCCCC
Confidence 42 26654221 258999999999999999855 58
Q ss_pred EEEEEecC--CeEEEEe-CCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCcce
Q 003907 195 VCMVRCSP--RIVAVGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGR 271 (787)
Q Consensus 195 V~sV~~s~--~~LaV~~-~~~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~~~~~lAlspr~LAyas~~~~l~~~g~ 271 (787)
|.++++++ +.|+++. ++.|++||+.+++...++..+.. ...++++| .+
T Consensus 168 v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~--------------v~~~~~~~-------~~-------- 218 (393)
T 1erj_A 168 IYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDG--------------VTTVAVSP-------GD-------- 218 (393)
T ss_dssp EEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSC--------------EEEEEECS-------TT--------
T ss_pred EEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEEcCCC--------------cEEEEEEC-------CC--------
Confidence 99999987 5666654 66899999999987666542111 11223221 00
Q ss_pred eccccCCCCCcCCCcCCCCCceeEeeehhhhhhhhcccceeecccccccCCCCCCCCcccCCccccccccccccCCCceE
Q 003907 272 LSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIV 351 (787)
Q Consensus 272 ~s~q~lt~~~~s~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V 351 (787)
+.+ ++.+..||.|
T Consensus 219 -------------------~~~------------------------------------------------l~~~s~d~~v 231 (393)
T 1erj_A 219 -------------------GKY------------------------------------------------IAAGSLDRAV 231 (393)
T ss_dssp -------------------CCE------------------------------------------------EEEEETTSCE
T ss_pred -------------------CCE------------------------------------------------EEEEcCCCcE
Confidence 110 1234568999
Q ss_pred EEEECCCCcEEEEe-------ccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEE
Q 003907 352 VVKDFVTRAIISQF-------KAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYK 424 (787)
Q Consensus 352 ~IwDl~s~~~v~~~-------~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~ 424 (787)
+|||+.+++.+..+ .+|..+|.+++|+|+|++||+++.|| .|+|||+........ ........+...
T Consensus 232 ~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~-~v~~wd~~~~~~~~~-----~~~~~~~~~~~~ 305 (393)
T 1erj_A 232 RVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDR-SVKLWNLQNANNKSD-----SKTPNSGTCEVT 305 (393)
T ss_dssp EEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTS-EEEEEEC--------------------CEEEE
T ss_pred EEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCC-EEEEEECCCCCCccc-----ccCCCCCcceEE
Confidence 99999999888777 68999999999999999999999966 599999854210000 000000123334
Q ss_pred EecccccccEEEEEEccCCCEEEEEeCCCeEEEEeCCCCCCcccccccc
Q 003907 425 LHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQTLS 473 (787)
Q Consensus 425 l~rG~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~~~gg~~~~~~H~ 473 (787)
+. | +...|.+++|+||+++|++++.|++|+|||+........+.+|.
T Consensus 306 ~~-~-h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~ 352 (393)
T 1erj_A 306 YI-G-HKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHR 352 (393)
T ss_dssp EE-C-CSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCS
T ss_pred Ee-c-ccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECCCC
Confidence 43 3 34569999999999999999999999999998654444555563
No 19
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=99.91 E-value=7.5e-22 Score=207.65 Aligned_cols=253 Identities=13% Similarity=0.159 Sum_probs=187.1
Q ss_pred CCCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCceeEeeeeccCcEEEEEEecCCCCCCCCCCccccC
Q 003907 52 SEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLH 130 (787)
Q Consensus 52 ~~~~~~~v~wa~Fd~l~~~~~~~~~vL~lG~~~G-~qVWdv~~~~~~~ells~~dg~V~~v~~lP~P~~~~~~d~F~~sr 130 (787)
..+|++.|..+.|.. +++.|++|..+| ++|||+.. +++...+..|.++|..+++.|+.
T Consensus 19 ~~gh~~~v~~~~~s~-------~~~~l~s~~~dg~i~iw~~~~-~~~~~~~~~h~~~v~~~~~~~~~------------- 77 (312)
T 4ery_A 19 LAGHTKAVSSVKFSP-------NGEWLASSSADKLIKIWGAYD-GKFEKTISGHKLGISDVAWSSDS------------- 77 (312)
T ss_dssp ECCCSSCEEEEEECT-------TSSEEEEEETTSCEEEEETTT-CCEEEEECCCSSCEEEEEECTTS-------------
T ss_pred EcccCCcEEEEEECC-------CCCEEEEeeCCCeEEEEeCCC-cccchhhccCCCceEEEEEcCCC-------------
Confidence 467899999999974 356788888776 99999954 66778888999999999998742
Q ss_pred cEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCC-CcEEEEEecC--CeEEE
Q 003907 131 PFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFR-SSVCMVRCSP--RIVAV 207 (787)
Q Consensus 131 pLLavV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~v~tL~f~-s~V~sV~~s~--~~LaV 207 (787)
.+|+..+. +++|++||+++++.+.+++.+ ..|..+.+++ ++|++
T Consensus 78 ~~l~s~~~---------------------------------d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s 124 (312)
T 4ery_A 78 NLLVSASD---------------------------------DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVS 124 (312)
T ss_dssp SEEEEEET---------------------------------TSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEE
T ss_pred CEEEEECC---------------------------------CCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEE
Confidence 26654321 258999999999999999865 5899999988 57776
Q ss_pred Ee-CCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCcceeccccCCCCCcCCCc
Q 003907 208 GL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPST 286 (787)
Q Consensus 208 ~~-~~~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~~~~~lAlspr~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~ 286 (787)
+. ++.|++||+.+++.+.++..|..+ ...++++| +.
T Consensus 125 ~~~d~~i~iwd~~~~~~~~~~~~~~~~-------------v~~~~~~~-------~~----------------------- 161 (312)
T 4ery_A 125 GSFDESVRIWDVKTGKCLKTLPAHSDP-------------VSAVHFNR-------DG----------------------- 161 (312)
T ss_dssp EETTSCEEEEETTTCCEEEEECCCSSC-------------EEEEEECT-------TS-----------------------
T ss_pred EeCCCcEEEEECCCCEEEEEecCCCCc-------------EEEEEEcC-------CC-----------------------
Confidence 55 568999999999888777655432 12233322 10
Q ss_pred CCCCCceeEeeehhhhhhhhcccceeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECCCCcEEEEec
Q 003907 287 SPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFK 366 (787)
Q Consensus 287 sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~v~~~~ 366 (787)
. .++.+..||.|++||+.+++.+..+.
T Consensus 162 ----~-------------------------------------------------~l~~~~~d~~i~~wd~~~~~~~~~~~ 188 (312)
T 4ery_A 162 ----S-------------------------------------------------LIVSSSYDGLCRIWDTASGQCLKTLI 188 (312)
T ss_dssp ----S-------------------------------------------------EEEEEETTSCEEEEETTTCCEEEEEC
T ss_pred ----C-------------------------------------------------EEEEEeCCCcEEEEECCCCceeeEEe
Confidence 0 01133568899999999998887764
Q ss_pred -cCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccc--cEEEEEEccCC
Q 003907 367 -AHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSA--TIQDICFSHYS 443 (787)
Q Consensus 367 -aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a--~I~slaFSpDg 443 (787)
.|..+|.+++|+|+|++|++++.|| .|+|||+.. + ..+..+. ++... .+....+.+++
T Consensus 189 ~~~~~~~~~~~~~~~~~~l~~~~~d~-~i~iwd~~~-------~----------~~~~~~~-~~~~~~~~~~~~~~~~~~ 249 (312)
T 4ery_A 189 DDDNPPVSFVKFSPNGKYILAATLDN-TLKLWDYSK-------G----------KCLKTYT-GHKNEKYCIFANFSVTGG 249 (312)
T ss_dssp CSSCCCEEEEEECTTSSEEEEEETTT-EEEEEETTT-------T----------EEEEEEC-SSCCSSSCCCEEEECSSS
T ss_pred ccCCCceEEEEECCCCCEEEEEcCCC-eEEEEECCC-------C----------cEEEEEE-ecCCceEEEEEEEEeCCC
Confidence 5678899999999999999999966 599999854 2 3454543 32221 23333344789
Q ss_pred CEEEEEeCCCeEEEEeCCCCCCcccccccc
Q 003907 444 QWIAIVSSKGTCHVFVLSPFGGDSGFQTLS 473 (787)
Q Consensus 444 ~~LAs~S~dgTVhIwdl~~~gg~~~~~~H~ 473 (787)
++|++++.||+|+|||+........+..|.
T Consensus 250 ~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~ 279 (312)
T 4ery_A 250 KWIVSGSEDNLVYIWNLQTKEIVQKLQGHT 279 (312)
T ss_dssp CEEEECCTTSCEEEEETTTCCEEEEECCCS
T ss_pred cEEEEECCCCEEEEEECCCchhhhhhhccC
Confidence 999999999999999998765555666664
No 20
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=99.91 E-value=7.8e-22 Score=208.74 Aligned_cols=316 Identities=10% Similarity=-0.007 Sum_probs=200.5
Q ss_pred CCCCCCcEEEEEEeeccCCCCCCCeEEEEEecCcEEEEEccCCCceeEeeee-----ccCcEEEEEEecCCCCCCCCCCc
Q 003907 52 SEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNGFQVLDVEDASNFNELVSK-----RDGPVSFLQMQPFPVKDDGCEGF 126 (787)
Q Consensus 52 ~~~~~~~v~wa~Fd~l~~~~~~~~~vL~lG~~~G~qVWdv~~~~~~~ells~-----~dg~V~~v~~lP~P~~~~~~d~F 126 (787)
.++|.+.|..+.|... .......+++.+..+.++|||+.... ....+.. +++.|.++.+.|+..
T Consensus 14 ~~~h~~~v~~i~~~p~--~~~~~~~~~~~~~~~~v~vw~~~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~-------- 82 (366)
T 3k26_A 14 KEDHNQPLFGVQFNWH--SKEGDPLVFATVGSNRVTLYECHSQG-EIRLLQSYVDADADENFYTCAWTYDSN-------- 82 (366)
T ss_dssp ECTTCSCEEEEEECTT--CCTTSCEEEEEEETTEEEEEEECGGG-CEEEEEEEECSCTTCCEEEEEEEECTT--------
T ss_pred ecCCCCceEEEEEecc--cCCCCceEEEECCCCEEEEEEcCCCc-EEEeeeeccccCCCCcEEEEEeccCCC--------
Confidence 3578999999999841 00123457777777779999997544 4444443 447899999998632
Q ss_pred cccCcEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEe-CCCcEEEEEecC---
Q 003907 127 RKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLR-FRSSVCMVRCSP--- 202 (787)
Q Consensus 127 ~~srpLLavV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~v~tL~-f~s~V~sV~~s~--- 202 (787)
....+|++.+. +++|++||+.+++.+.++. +...|.++++++
T Consensus 83 -~~~~~l~~~~~---------------------------------dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~ 128 (366)
T 3k26_A 83 -TSHPLLAVAGS---------------------------------RGIIRIINPITMQCIKHYVGHGNAINELKFHPRDP 128 (366)
T ss_dssp -TCCEEEEEEET---------------------------------TCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCT
T ss_pred -CCCCEEEEecC---------------------------------CCEEEEEEchhceEeeeecCCCCcEEEEEECCCCC
Confidence 11236655321 2589999999999999998 556999999976
Q ss_pred CeEEEEe-CCeEEEEECCCCceeEEEE---ecCCcccCCCCccccccccceeEEcc--ceEEEecCCceecCcceecccc
Q 003907 203 RIVAVGL-ATQIYCFDALTLENKFSVL---TYPVPQLAGQGAVGINVGYGPMAVGP--RWLAYASNTLLLSNSGRLSPQN 276 (787)
Q Consensus 203 ~~LaV~~-~~~I~iwD~~T~e~l~tl~---t~p~p~~~~~~~~~~~~~~~~lAlsp--r~LAyas~~~~l~~~g~~s~q~ 276 (787)
++|+++. ++.|++||+.+++.+..+. .+..+ ...++++| ++|+.++.+..+ ..|+.
T Consensus 129 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~-------------v~~~~~~~~~~~l~~~~~dg~i-----~i~d~ 190 (366)
T 3k26_A 129 NLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDE-------------VLSADYDLLGEKIMSCGMDHSL-----KLWRI 190 (366)
T ss_dssp TEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSC-------------EEEEEECTTSSEEEEEETTSCE-----EEEES
T ss_pred CEEEEEeCCCeEEEEEeecCeEEEEecccccccCc-------------eeEEEECCCCCEEEEecCCCCE-----EEEEC
Confidence 5777765 5689999999998877773 33321 35678887 688887654211 11222
Q ss_pred CCCCCc-----CCCcCCCCCceeEeeehhhhhhhhcccceeecccccccCCCCCCCCcccCCccccccccccccCCCceE
Q 003907 277 LTPSGV-----SPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIV 351 (787)
Q Consensus 277 lt~~~~-----s~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V 351 (787)
.+.... ...++|.+..+... ........+.......+....+.++ +..++.+..+|.|
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~v~~~~~~------~~~l~~~~~d~~i 253 (366)
T 3k26_A 191 NSKRMMNAIKESYDYNPNKTNRPFI-----------SQKIHFPDFSTRDIHRNYVDCVRWL------GDLILSKSCENAI 253 (366)
T ss_dssp CSHHHHHHHHHHHTCCGGGCSSCCC-----------CEEECCCSEEECSSCSSCCCEEEEE------TTEEEEECSSSEE
T ss_pred CCCccccccceeEEecCCCCccccc-----------ceeeccCccccccCCcceEEEEEEc------CCEEEEEecCCEE
Confidence 110000 00000000000000 0000000000000001111112221 1234567889999
Q ss_pred EEEECCCCc--------------EEEEeccCCCCeEEEEECCC--CCEEEEEEcCCCEEEEEeCCCCcccCCCCCCcccc
Q 003907 352 VVKDFVTRA--------------IISQFKAHTSPISALCFDPS--GTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDW 415 (787)
Q Consensus 352 ~IwDl~s~~--------------~v~~~~aH~~pIsaLaFSpd--G~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~ 415 (787)
++||+.+++ .+..+..|..+|.+++|+|+ |++||+++.||. |+|||+... .
T Consensus 254 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~-i~vwd~~~~-------~----- 320 (366)
T 3k26_A 254 VCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGK-LYVWDLEVE-------D----- 320 (366)
T ss_dssp EEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSC-EEEEECCSS-------S-----
T ss_pred EEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCCc-EEEEECCCC-------C-----
Confidence 999998764 48889999999999999999 999999999776 999999541 0
Q ss_pred CCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEeCC
Q 003907 416 NSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLS 461 (787)
Q Consensus 416 ~~s~~~l~~l~rG~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~ 461 (787)
.....+..+....+...|.+++|+||+++|++++.||+|+|||+.
T Consensus 321 -~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~ 365 (366)
T 3k26_A 321 -PHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRL 365 (366)
T ss_dssp -GGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred -CccccceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEec
Confidence 001234455432224679999999999999999999999999985
No 21
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=99.91 E-value=9.7e-22 Score=211.92 Aligned_cols=260 Identities=16% Similarity=0.153 Sum_probs=176.4
Q ss_pred CCCCCC-cEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCce-e-EeeeeccCcEEEEEEecCCCCCCCCCCcc
Q 003907 52 SEDLKD-QVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNF-N-ELVSKRDGPVSFLQMQPFPVKDDGCEGFR 127 (787)
Q Consensus 52 ~~~~~~-~v~wa~Fd~l~~~~~~~~~vL~lG~~~G-~qVWdv~~~~~~-~-ells~~dg~V~~v~~lP~P~~~~~~d~F~ 127 (787)
..+|++ .|..+.|.. ++++|++|..+| ++|||++..... . .+...|.++|..+++.|+.
T Consensus 11 ~~~h~~~~v~~l~~sp-------~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g---------- 73 (345)
T 3fm0_A 11 VPAHPDSRCWFLAWNP-------AGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCG---------- 73 (345)
T ss_dssp ECCSTTSCEEEEEECT-------TSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTS----------
T ss_pred ecCCCCCcEEEEEECC-------CCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCC----------
Confidence 346776 788888863 467888888776 999999653211 2 2335788999999999752
Q ss_pred ccCcEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCe--EEEEEeCC-CcEEEEEecC--
Q 003907 128 KLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHC--YEHVLRFR-SSVCMVRCSP-- 202 (787)
Q Consensus 128 ~srpLLavV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~--~v~tL~f~-s~V~sV~~s~-- 202 (787)
.+||..+. +++|++||+.+++ ++.+++.+ ..|.+|++++
T Consensus 74 ---~~l~s~s~---------------------------------D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~ 117 (345)
T 3fm0_A 74 ---NYLASASF---------------------------------DATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSG 117 (345)
T ss_dssp ---SEEEEEET---------------------------------TSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTS
T ss_pred ---CEEEEEEC---------------------------------CCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCC
Confidence 26665332 2589999998774 56777654 5899999987
Q ss_pred CeEEEEe-CCeEEEEECCCCceeE---EEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCcceeccccCC
Q 003907 203 RIVAVGL-ATQIYCFDALTLENKF---SVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLT 278 (787)
Q Consensus 203 ~~LaV~~-~~~I~iwD~~T~e~l~---tl~t~p~p~~~~~~~~~~~~~~~~lAlspr~LAyas~~~~l~~~g~~s~q~lt 278 (787)
++|+++. ++.|++||+.+.+... .+..|..+ ...++++| +.
T Consensus 118 ~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~-------------v~~~~~~p-------~~--------------- 162 (345)
T 3fm0_A 118 NLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQD-------------VKHVVWHP-------SQ--------------- 162 (345)
T ss_dssp SEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSC-------------EEEEEECS-------SS---------------
T ss_pred CEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCC-------------eEEEEECC-------CC---------------
Confidence 6777765 5689999998765332 22222221 11223222 10
Q ss_pred CCCcCCCcCCCCCceeEeeehhhhhhhhcccceeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECCC
Q 003907 279 PSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVT 358 (787)
Q Consensus 279 ~~~~s~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s 358 (787)
. .++++..||+|+|||+.+
T Consensus 163 ------------~-------------------------------------------------~l~s~s~d~~i~~w~~~~ 181 (345)
T 3fm0_A 163 ------------E-------------------------------------------------LLASASYDDTVKLYREEE 181 (345)
T ss_dssp ------------S-------------------------------------------------CEEEEETTSCEEEEEEET
T ss_pred ------------C-------------------------------------------------EEEEEeCCCcEEEEEecC
Confidence 0 112345688999999988
Q ss_pred Cc--EEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEE
Q 003907 359 RA--IISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQD 436 (787)
Q Consensus 359 ~~--~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~s 436 (787)
++ ....+.+|..+|.+|+|+|+|++|||++.|++ |+|||+.... ...+...........++..+. |.+...|++
T Consensus 182 ~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~-v~iW~~~~~~--~~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~ 257 (345)
T 3fm0_A 182 DDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRT-VRIWRQYLPG--NEQGVACSGSDPSWKCICTLS-GFHSRTIYD 257 (345)
T ss_dssp TEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSC-EEEEEEECTT--CTTCCCCC---CEEEEEEEEC-SSCSSCEEE
T ss_pred CCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCe-EEEeccccCC--CCccceeeccCCccceeEEec-CCCCCcEEE
Confidence 75 45788999999999999999999999999776 9999963210 000000000011123344443 445567999
Q ss_pred EEEccCCCEEEEEeCCCeEEEEeCCCCC
Q 003907 437 ICFSHYSQWIAIVSSKGTCHVFVLSPFG 464 (787)
Q Consensus 437 laFSpDg~~LAs~S~dgTVhIwdl~~~g 464 (787)
++|+|++..|++++.|++|+||++.+..
T Consensus 258 v~~~~~~~~l~s~~~d~~i~vw~~~~~~ 285 (345)
T 3fm0_A 258 IAWCQLTGALATACGDDAIRVFQEDPNS 285 (345)
T ss_dssp EEECTTTCCEEEEETTSCEEEEEECTTS
T ss_pred EEEecCCCEEEEEeCCCeEEEEEeCCCC
Confidence 9999999999999999999999987643
No 22
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=99.91 E-value=1.1e-21 Score=215.11 Aligned_cols=241 Identities=12% Similarity=0.137 Sum_probs=173.8
Q ss_pred EEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCceeEeeeeccCcEEEEEEecCCCCCCCCCCccccCcEEEEEE
Q 003907 59 VTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVA 137 (787)
Q Consensus 59 v~wa~Fd~l~~~~~~~~~vL~lG~~~G-~qVWdv~~~~~~~ells~~dg~V~~v~~lP~P~~~~~~d~F~~srpLLavV~ 137 (787)
|..+.|.. +++.|++|..+| ++|||++. +++...+..|.++|..+.+.|+. .+|+..+
T Consensus 126 v~~v~~s~-------dg~~l~s~~~d~~i~iwd~~~-~~~~~~~~~h~~~v~~~~~~p~~-------------~~l~s~s 184 (393)
T 1erj_A 126 IRSVCFSP-------DGKFLATGAEDRLIRIWDIEN-RKIVMILQGHEQDIYSLDYFPSG-------------DKLVSGS 184 (393)
T ss_dssp EEEEEECT-------TSSEEEEEETTSCEEEEETTT-TEEEEEECCCSSCEEEEEECTTS-------------SEEEEEE
T ss_pred EEEEEECC-------CCCEEEEEcCCCeEEEEECCC-CcEEEEEccCCCCEEEEEEcCCC-------------CEEEEec
Confidence 66677752 467888888876 99999964 66777888999999999998742 2565432
Q ss_pred cCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCCcEEEEEecC---CeEEEEe-CCeE
Q 003907 138 GEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRSSVCMVRCSP---RIVAVGL-ATQI 213 (787)
Q Consensus 138 ~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~v~tL~f~s~V~sV~~s~---~~LaV~~-~~~I 213 (787)
. +++|++||+++++++.++.....|..+++++ ++|+++. ++.|
T Consensus 185 ~---------------------------------d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~s~d~~v 231 (393)
T 1erj_A 185 G---------------------------------DRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAV 231 (393)
T ss_dssp T---------------------------------TSEEEEEETTTTEEEEEEECSSCEEEEEECSTTCCEEEEEETTSCE
T ss_pred C---------------------------------CCcEEEEECCCCeeEEEEEcCCCcEEEEEECCCCCEEEEEcCCCcE
Confidence 1 2689999999999999999999999999976 5777765 5679
Q ss_pred EEEECCCCceeEEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCcceeccccCCCCCcCCCcCCCCCce
Q 003907 214 YCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSL 293 (787)
Q Consensus 214 ~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~~~~~lAlspr~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~sp~~g~l 293 (787)
++||+.+++.+..+....... ..+. .....++++| +
T Consensus 232 ~iwd~~~~~~~~~~~~~~~~~-~~h~-----~~v~~v~~~~-------~------------------------------- 267 (393)
T 1erj_A 232 RVWDSETGFLVERLDSENESG-TGHK-----DSVYSVVFTR-------D------------------------------- 267 (393)
T ss_dssp EEEETTTCCEEEEEC-------CCCS-----SCEEEEEECT-------T-------------------------------
T ss_pred EEEECCCCcEEEeecccccCC-CCCC-----CCEEEEEECC-------C-------------------------------
Confidence 999999998776663211100 0000 0011122211 0
Q ss_pred eEeeehhhhhhhhcccceeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECCCC------------cE
Q 003907 294 VARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTR------------AI 361 (787)
Q Consensus 294 va~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~------------~~ 361 (787)
++ .++++..||.|+|||+.+. .+
T Consensus 268 -----------------------------------------g~----~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~ 302 (393)
T 1erj_A 268 -----------------------------------------GQ----SVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTC 302 (393)
T ss_dssp -----------------------------------------SS----EEEEEETTSEEEEEEC---------------CE
T ss_pred -----------------------------------------CC----EEEEEeCCCEEEEEECCCCCCcccccCCCCCcc
Confidence 00 1224456889999998753 35
Q ss_pred EEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEcc
Q 003907 362 ISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSH 441 (787)
Q Consensus 362 v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSp 441 (787)
...+.+|...|.+++|+|+|.+|++++.|| .|+|||+.. + ..+..+. | +...|.+++|++
T Consensus 303 ~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~-~v~iwd~~~-------~----------~~~~~l~-~-h~~~v~~v~~~~ 362 (393)
T 1erj_A 303 EVTYIGHKDFVLSVATTQNDEYILSGSKDR-GVLFWDKKS-------G----------NPLLMLQ-G-HRNSVISVAVAN 362 (393)
T ss_dssp EEEEECCSSCEEEEEECGGGCEEEEEETTS-EEEEEETTT-------C----------CEEEEEE-C-CSSCEEEEEECS
T ss_pred eEEEecccCcEEEEEECCCCCEEEEEeCCC-eEEEEECCC-------C----------eEEEEEC-C-CCCCEEEEEecC
Confidence 667889999999999999999999999966 499999854 3 3555664 4 345799999986
Q ss_pred ------CCCEEEEEeCCCeEEEEeCCC
Q 003907 442 ------YSQWIAIVSSKGTCHVFVLSP 462 (787)
Q Consensus 442 ------Dg~~LAs~S~dgTVhIwdl~~ 462 (787)
|+++||+++.||+|+||++..
T Consensus 363 ~~~~~p~~~~l~sgs~Dg~i~iW~~~~ 389 (393)
T 1erj_A 363 GSSLGPEYNVFATGSGDCKARIWKYKK 389 (393)
T ss_dssp SCTTCTTCEEEEEEETTSEEEEEEEEE
T ss_pred CcCcCCCCCEEEEECCCCcEEECcccc
Confidence 789999999999999999864
No 23
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=99.91 E-value=1.8e-21 Score=211.11 Aligned_cols=235 Identities=14% Similarity=0.089 Sum_probs=174.0
Q ss_pred CCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCC-----ceeEeeeeccCcEEEEEEecCCCCCCCCCCcccc
Q 003907 56 KDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDAS-----NFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKL 129 (787)
Q Consensus 56 ~~~v~wa~Fd~l~~~~~~~~~vL~lG~~~G-~qVWdv~~~~-----~~~ells~~dg~V~~v~~lP~P~~~~~~d~F~~s 129 (787)
...|..+.|.. ++..|++|..++ ++||++.... .....+..|.+.|..+.+.|+.
T Consensus 106 ~~~v~~~~~sp-------~g~~lasg~~d~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~------------ 166 (354)
T 2pbi_B 106 CTWVMACAYAP-------SGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSD------------ 166 (354)
T ss_dssp SSCCCEEEECT-------TSSEEEEESTTSEEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSS------------
T ss_pred CCCEEEEEECC-------CCCEEEEeeCCCCEEEEEEeccccccccccceeeeccCCcEEEEEEeCCC------------
Confidence 33455555542 467888888876 8999985321 2345567889999999998642
Q ss_pred CcEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCC-CcEEEEEecC----Ce
Q 003907 130 HPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFR-SSVCMVRCSP----RI 204 (787)
Q Consensus 130 rpLLavV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~v~tL~f~-s~V~sV~~s~----~~ 204 (787)
..|+..+. +++|++||+++++.+.++..+ ..|..+++++ ++
T Consensus 167 -~~l~t~s~---------------------------------D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~ 212 (354)
T 2pbi_B 167 -MQILTASG---------------------------------DGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNT 212 (354)
T ss_dssp -SEEEEEET---------------------------------TSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCE
T ss_pred -CEEEEEeC---------------------------------CCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCE
Confidence 25554332 268999999999999999865 5898888865 47
Q ss_pred EEEEe-CCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCcceeccccCCCCCcC
Q 003907 205 VAVGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVS 283 (787)
Q Consensus 205 LaV~~-~~~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~~~~~lAlspr~LAyas~~~~l~~~g~~s~q~lt~~~~s 283 (787)
|+++. ++.|++||+.+++.+.++..|..+ ...++++| +.
T Consensus 213 l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~-------------v~~v~~~p-------~~-------------------- 252 (354)
T 2pbi_B 213 FVSGGCDKKAMVWDMRSGQCVQAFETHESD-------------VNSVRYYP-------SG-------------------- 252 (354)
T ss_dssp EEEEETTSCEEEEETTTCCEEEEECCCSSC-------------EEEEEECT-------TS--------------------
T ss_pred EEEEeCCCeEEEEECCCCcEEEEecCCCCC-------------eEEEEEeC-------CC--------------------
Confidence 77755 668999999999988887766542 23344432 10
Q ss_pred CCcCCCCCceeEeeehhhhhhhhcccceeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECCCCcEEE
Q 003907 284 PSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIIS 363 (787)
Q Consensus 284 ~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~v~ 363 (787)
. .+++++.||+|+|||+.+++.+.
T Consensus 253 -------~-------------------------------------------------~l~s~s~D~~v~lwd~~~~~~~~ 276 (354)
T 2pbi_B 253 -------D-------------------------------------------------AFASGSDDATCRLYDLRADREVA 276 (354)
T ss_dssp -------S-------------------------------------------------EEEEEETTSCEEEEETTTTEEEE
T ss_pred -------C-------------------------------------------------EEEEEeCCCeEEEEECCCCcEEE
Confidence 0 01234568999999999988877
Q ss_pred EeccC--CCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEcc
Q 003907 364 QFKAH--TSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSH 441 (787)
Q Consensus 364 ~~~aH--~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSp 441 (787)
.+..| ...+.+++|+|+|++|++++.|++ |+|||+.. + ..+..+. | +...|.+++|||
T Consensus 277 ~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~-i~vwd~~~-------~----------~~~~~l~-~-h~~~v~~l~~sp 336 (354)
T 2pbi_B 277 IYSKESIIFGASSVDFSLSGRLLFAGYNDYT-INVWDVLK-------G----------SRVSILF-G-HENRVSTLRVSP 336 (354)
T ss_dssp EECCTTCCSCEEEEEECTTSSEEEEEETTSC-EEEEETTT-------C----------SEEEEEC-C-CSSCEEEEEECT
T ss_pred EEcCCCcccceeEEEEeCCCCEEEEEECCCc-EEEEECCC-------C----------ceEEEEE-C-CCCcEEEEEECC
Confidence 77644 458999999999999999999776 99999854 3 3555554 4 345799999999
Q ss_pred CCCEEEEEeCCCeEEEEe
Q 003907 442 YSQWIAIVSSKGTCHVFV 459 (787)
Q Consensus 442 Dg~~LAs~S~dgTVhIwd 459 (787)
||++||+++.|++|+||+
T Consensus 337 dg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 337 DGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp TSSCEEEEETTSEEEEEC
T ss_pred CCCEEEEEcCCCCEEecC
Confidence 999999999999999996
No 24
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=99.91 E-value=7.9e-22 Score=229.49 Aligned_cols=260 Identities=15% Similarity=0.135 Sum_probs=183.1
Q ss_pred CCCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCC-CceeEeeeeccCcEEEEEEecCCCCCCCCCCcccc
Q 003907 52 SEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDA-SNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKL 129 (787)
Q Consensus 52 ~~~~~~~v~wa~Fd~l~~~~~~~~~vL~lG~~~G-~qVWdv~~~-~~~~ells~~dg~V~~v~~lP~P~~~~~~d~F~~s 129 (787)
..+|++.|..+.|.. +++.|++|..+| ++|||+... ..+...+..|.++|..|++.|+.
T Consensus 55 ~~~h~~~v~~~~~sp-------dg~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg------------ 115 (611)
T 1nr0_A 55 YTEHSHQTTVAKTSP-------SGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSES------------ 115 (611)
T ss_dssp ECCCSSCEEEEEECT-------TSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTS------------
T ss_pred ecCCCCceEEEEECC-------CCcEEEEEeCCCCEEEeECCCCcceeeEeecccCCceEEEEECCCC------------
Confidence 457889999999963 478999999887 999999542 23344677889999999999752
Q ss_pred CcEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCC-CcEEEEEecCC---eE
Q 003907 130 HPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFR-SSVCMVRCSPR---IV 205 (787)
Q Consensus 130 rpLLavV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~v~tL~f~-s~V~sV~~s~~---~L 205 (787)
.+||+++.+.. ...+|++|| +++.+.++..+ ..|.+|+|+|. +|
T Consensus 116 -~~l~~~~~~~~-----------------------------~~~~v~~wd--~~~~~~~l~gh~~~v~~v~f~p~~~~~l 163 (611)
T 1nr0_A 116 -KRIAAVGEGRE-----------------------------RFGHVFLFD--TGTSNGNLTGQARAMNSVDFKPSRPFRI 163 (611)
T ss_dssp -CEEEEEECCSS-----------------------------CSEEEEETT--TCCBCBCCCCCSSCEEEEEECSSSSCEE
T ss_pred -CEEEEEECCCC-----------------------------ceeEEEEee--CCCCcceecCCCCCceEEEECCCCCeEE
Confidence 25665432210 014788888 46666777655 58999999983 47
Q ss_pred EEEe-CCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEcc--ceEEEecCCceecCcceeccccCCCCCc
Q 003907 206 AVGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP--RWLAYASNTLLLSNSGRLSPQNLTPSGV 282 (787)
Q Consensus 206 aV~~-~~~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~~~~~lAlsp--r~LAyas~~~~l~~~g~~s~q~lt~~~~ 282 (787)
+++. ++.|++||..+++++.++..|..+ ...++++| ++|
T Consensus 164 ~s~s~D~~v~lwd~~~~~~~~~l~~H~~~-------------V~~v~fspdg~~l------------------------- 205 (611)
T 1nr0_A 164 ISGSDDNTVAIFEGPPFKFKSTFGEHTKF-------------VHSVRYNPDGSLF------------------------- 205 (611)
T ss_dssp EEEETTSCEEEEETTTBEEEEEECCCSSC-------------EEEEEECTTSSEE-------------------------
T ss_pred EEEeCCCeEEEEECCCCeEeeeeccccCc-------------eEEEEECCCCCEE-------------------------
Confidence 7655 567999999999888888776552 23444433 122
Q ss_pred CCCcCCCCCceeEeeehhhhhhhhcccceeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECCCCcEE
Q 003907 283 SPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAII 362 (787)
Q Consensus 283 s~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~v 362 (787)
++++.||+|+|||+.+++.+
T Consensus 206 ------------------------------------------------------------as~s~D~~i~lwd~~~g~~~ 225 (611)
T 1nr0_A 206 ------------------------------------------------------------ASTGGDGTIVLYNGVDGTKT 225 (611)
T ss_dssp ------------------------------------------------------------EEEETTSCEEEEETTTCCEE
T ss_pred ------------------------------------------------------------EEEECCCcEEEEECCCCcEe
Confidence 23456899999999999998
Q ss_pred EEec-------cCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccC-C-CCCC------cc--------------
Q 003907 363 SQFK-------AHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRS-G-SGNH------KY-------------- 413 (787)
Q Consensus 363 ~~~~-------aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~-~-~g~~------~~-------------- 413 (787)
..+. +|..+|.+++|+|+|++|||++.|+ .|+|||+....... . .+.. ..
T Consensus 226 ~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~-~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~ 304 (611)
T 1nr0_A 226 GVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADK-TIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANG 304 (611)
T ss_dssp EECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTS-EEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTC
T ss_pred eeeccccccccccCCCEEEEEECCCCCEEEEEeCCC-eEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCC
Confidence 8884 7999999999999999999999966 59999986421000 0 0000 00
Q ss_pred ---ccCC-cceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEeCCCC
Q 003907 414 ---DWNS-SHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPF 463 (787)
Q Consensus 414 ---~~~~-s~~~l~~l~rG~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~~~ 463 (787)
.|+. ....+.. ..| +...|.+++|||||++|++++.|++|++||+...
T Consensus 305 ~i~~~~~~~~~~~~~-~~g-h~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~ 356 (611)
T 1nr0_A 305 FINFVNPELGSIDQV-RYG-HNKAITALSSSADGKTLFSADAEGHINSWDISTG 356 (611)
T ss_dssp CEEEEETTTTEEEEE-ECC-CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTC
T ss_pred cEEEEeCCCCCcceE-EcC-CCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCC
Confidence 0000 0011112 234 3457999999999999999999999999999764
No 25
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=99.90 E-value=1.9e-21 Score=208.91 Aligned_cols=260 Identities=20% Similarity=0.186 Sum_probs=174.5
Q ss_pred CCCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCC------CceeEeeeeccCcEEEEEEecCCCCCCCCC
Q 003907 52 SEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDA------SNFNELVSKRDGPVSFLQMQPFPVKDDGCE 124 (787)
Q Consensus 52 ~~~~~~~v~wa~Fd~l~~~~~~~~~vL~lG~~~G-~qVWdv~~~------~~~~ells~~dg~V~~v~~lP~P~~~~~~d 124 (787)
..+|++.|..+.|.-... ...++++|++|..+| ++|||+... +.....+..|.++|..+.+.|+.
T Consensus 17 l~gH~~~V~~~~~~~s~~-~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~------- 88 (343)
T 2xzm_R 17 LEGHSDWVTSIVAGFSQK-ENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQEN------- 88 (343)
T ss_dssp EECCSSCEEEEEECCCSS-TTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSST-------
T ss_pred eccchhhhhheeeEEEee-cCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCC-------
Confidence 567999999998842110 012467888888876 999999642 23445678899999999998642
Q ss_pred CccccCcEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCC-CcEEEEEecC-
Q 003907 125 GFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFR-SSVCMVRCSP- 202 (787)
Q Consensus 125 ~F~~srpLLavV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~v~tL~f~-s~V~sV~~s~- 202 (787)
.+|+..+. +++|+|||+++++.+.++..+ ..|.+|++++
T Consensus 89 ------~~l~s~s~---------------------------------D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~ 129 (343)
T 2xzm_R 89 ------CFAISSSW---------------------------------DKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPD 129 (343)
T ss_dssp ------TEEEEEET---------------------------------TSEEEEEETTSSCEEEEEECCCSCEEEEEECSS
T ss_pred ------CEEEEEcC---------------------------------CCcEEEEECCCCcEEEEEcCCCCcEEEEEECCC
Confidence 26654221 369999999999999999754 6999999987
Q ss_pred -CeEEEE-eCCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCcceeccccCCCC
Q 003907 203 -RIVAVG-LATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPS 280 (787)
Q Consensus 203 -~~LaV~-~~~~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~~~~~lAlspr~LAyas~~~~l~~~g~~s~q~lt~~ 280 (787)
+.|+++ .++.|++||+.. +....+..... +. .....++ +..... . ..
T Consensus 130 ~~~l~s~~~d~~i~~wd~~~-~~~~~~~~~~~-----~~-----~~v~~~~-------~~~~~~-------~-~~----- 178 (343)
T 2xzm_R 130 NRQILSAGAEREIKLWNILG-ECKFSSAEKEN-----HS-----DWVSCVR-------YSPIMK-------S-AN----- 178 (343)
T ss_dssp TTEEEEEETTSCEEEEESSS-CEEEECCTTTS-----CS-----SCEEEEE-------ECCCCC-------S-CS-----
T ss_pred CCEEEEEcCCCEEEEEeccC-CceeeeecccC-----CC-----ceeeeee-------eccccc-------c-cc-----
Confidence 566665 467899999873 33222221000 00 0011222 222110 0 00
Q ss_pred CcCCCcCCCCCceeEeeehhhhhhhhcccceeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECCCCc
Q 003907 281 GVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRA 360 (787)
Q Consensus 281 ~~s~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~ 360 (787)
. ..| ....++.+..||.|+||| .+.+
T Consensus 179 -------------------------------~-------~~~---------------~~~~l~s~~~d~~i~iwd-~~~~ 204 (343)
T 2xzm_R 179 -------------------------------K-------VQP---------------FAPYFASVGWDGRLKVWN-TNFQ 204 (343)
T ss_dssp -------------------------------C-------CCS---------------SCCEEEEEETTSEEEEEE-TTTE
T ss_pred -------------------------------c-------cCC---------------CCCEEEEEcCCCEEEEEc-CCCc
Confidence 0 000 001134567899999999 4567
Q ss_pred EEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEc
Q 003907 361 IISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFS 440 (787)
Q Consensus 361 ~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFS 440 (787)
....+.+|..+|.+++|+|+|++|||++.||+ |+|||+... + .....+..+ ..|.+++|+
T Consensus 205 ~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~-v~iwd~~~~------~----------~~~~~~~~~---~~v~~v~~s 264 (343)
T 2xzm_R 205 IRYTFKAHESNVNHLSISPNGKYIATGGKDKK-LLIWDILNL------T----------YPQREFDAG---STINQIAFN 264 (343)
T ss_dssp EEEEEECCSSCEEEEEECTTSSEEEEEETTCE-EEEEESSCC------S----------SCSEEEECS---SCEEEEEEC
T ss_pred eeEEEcCccccceEEEECCCCCEEEEEcCCCe-EEEEECCCC------c----------ccceeecCC---CcEEEEEEC
Confidence 78889999999999999999999999999765 999998431 1 122233222 359999999
Q ss_pred cCCCEEEEEeCCCeEEEEeCCCCC
Q 003907 441 HYSQWIAIVSSKGTCHVFVLSPFG 464 (787)
Q Consensus 441 pDg~~LAs~S~dgTVhIwdl~~~g 464 (787)
||+++|+++ .|++|+||++....
T Consensus 265 p~~~~la~~-~d~~v~iw~~~~~~ 287 (343)
T 2xzm_R 265 PKLQWVAVG-TDQGVKIFNLMTQS 287 (343)
T ss_dssp SSSCEEEEE-ESSCEEEEESSSCC
T ss_pred CCCCEEEEE-CCCCEEEEEeCCCC
Confidence 999988765 57789999997643
No 26
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=99.90 E-value=1.2e-22 Score=216.34 Aligned_cols=266 Identities=15% Similarity=0.116 Sum_probs=172.7
Q ss_pred CCCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCC-ceeEeeeeccCcEEEEEEecCCCCCCCCCCcccc
Q 003907 52 SEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDAS-NFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKL 129 (787)
Q Consensus 52 ~~~~~~~v~wa~Fd~l~~~~~~~~~vL~lG~~~G-~qVWdv~~~~-~~~ells~~dg~V~~v~~lP~P~~~~~~d~F~~s 129 (787)
..+|++.|..+.|+. +++.|++|..+| ++|||+.... .+...+..|.++|..|++.|.. .+
T Consensus 9 ~~~H~~~V~~v~~s~-------~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~---------~~- 71 (316)
T 3bg1_A 9 DTSHEDMIHDAQMDY-------YGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPM---------YG- 71 (316)
T ss_dssp -----CCEEEEEECG-------GGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGG---------GS-
T ss_pred cccccCeEEEeeEcC-------CCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCC---------CC-
Confidence 467999999999974 366888888876 9999996532 2345677899999999997521 11
Q ss_pred CcEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCe--EEEEEeC-CCcEEEEEecCC---
Q 003907 130 HPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHC--YEHVLRF-RSSVCMVRCSPR--- 203 (787)
Q Consensus 130 rpLLavV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~--~v~tL~f-~s~V~sV~~s~~--- 203 (787)
.+|+.++. +++|+|||+++++ .+.++.. ...|.+|++++.
T Consensus 72 -~~l~s~s~---------------------------------D~~v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g 117 (316)
T 3bg1_A 72 -NILASCSY---------------------------------DRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYG 117 (316)
T ss_dssp -SCEEEEET---------------------------------TSCEEEECCSSSCCCEEEEECCCSSCCCEEEECCTTTC
T ss_pred -CEEEEEEC---------------------------------CCEEEEEECCCCcceEEEEccCCCCceEEEEECCCCCC
Confidence 25655332 2689999999874 5666654 468999999873
Q ss_pred -eEEEEe-CCeEEEEECCCCceeEEE---EecCCcccCCCCccccccccceeEEccceEEEecCCceecCcceeccccCC
Q 003907 204 -IVAVGL-ATQIYCFDALTLENKFSV---LTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLT 278 (787)
Q Consensus 204 -~LaV~~-~~~I~iwD~~T~e~l~tl---~t~p~p~~~~~~~~~~~~~~~~lAlspr~LAyas~~~~l~~~g~~s~q~lt 278 (787)
+|+++. ++.|++||+.+....... ..|.. ....++++|... .
T Consensus 118 ~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~-------------~v~~~~~~~~~~--~------------------ 164 (316)
T 3bg1_A 118 LILACGSSDGAISLLTYTGEGQWEVKKINNAHTI-------------GCNAVSWAPAVV--P------------------ 164 (316)
T ss_dssp SCEEEECSSSCEEEEEECSSSCEEECCBTTSSSS-------------CBCCCEECCCCC--C------------------
T ss_pred cEEEEEcCCCCEEEEecCCCCCcceeeeeccccC-------------CcceEEEccccC--C------------------
Confidence 677765 567999998875322111 11211 122344433110 0
Q ss_pred CCCcCCCcCCCCCceeEeeehhhhhhhhcccceeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECCC
Q 003907 279 PSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVT 358 (787)
Q Consensus 279 ~~~~s~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s 358 (787)
+.++.+ +.+.. . .....+++++.||+|+|||+..
T Consensus 165 ------------~~~~~~-------------------------~~~~~-----~----~~~~~l~sgs~D~~v~lWd~~~ 198 (316)
T 3bg1_A 165 ------------GSLIDH-------------------------PSGQK-----P----NYIKRFASGGCDNLIKLWKEEE 198 (316)
T ss_dssp -------------------------------------------CCSCC-----C----CCCCBEECCBTTSBCCEEEECT
T ss_pred ------------cccccc-------------------------ccccC-----c----cccceEEEecCCCeEEEEEeCC
Confidence 000000 00000 0 0001244677899999999975
Q ss_pred C---cEEEEeccCCCCeEEEEECCCC----CEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEeccccc
Q 003907 359 R---AIISQFKAHTSPISALCFDPSG----TLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITS 431 (787)
Q Consensus 359 ~---~~v~~~~aH~~pIsaLaFSpdG----~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~ 431 (787)
. +.+..|.+|..+|.+++|+|++ .+|||+|.||+ |+|||+.... .+. .....+. + +.
T Consensus 199 ~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~-v~iw~~~~~~----~~~---------~~~~~~~-~-~~ 262 (316)
T 3bg1_A 199 DGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGR-VFIWTCDDAS----SNT---------WSPKLLH-K-FN 262 (316)
T ss_dssp TSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCE-EEEEECSSTT----CCC---------CBCCEEE-E-CS
T ss_pred CCccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCe-EEEEEccCcc----ccc---------hhhhhhh-c-CC
Confidence 5 4677899999999999999997 89999999665 9999985310 000 0011121 2 23
Q ss_pred ccEEEEEEccCCCEEEEEeCCCeEEEEeCCCC
Q 003907 432 ATIQDICFSHYSQWIAIVSSKGTCHVFVLSPF 463 (787)
Q Consensus 432 a~I~slaFSpDg~~LAs~S~dgTVhIwdl~~~ 463 (787)
..|++++|+|||++||+++.|++|+||++...
T Consensus 263 ~~v~~v~~sp~g~~las~~~D~~v~lw~~~~~ 294 (316)
T 3bg1_A 263 DVVWHVSWSITANILAVSGGDNKVTLWKESVD 294 (316)
T ss_dssp SCEEEEEECTTTCCEEEEESSSCEEEEEECTT
T ss_pred CcEEEEEEcCCCCEEEEEcCCCeEEEEEECCC
Confidence 57999999999999999999999999998644
No 27
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=99.90 E-value=6.1e-22 Score=209.43 Aligned_cols=217 Identities=14% Similarity=0.199 Sum_probs=165.7
Q ss_pred eeEeeeeccCcEEEEEEecCCCCCCCCCCccccCcEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEE
Q 003907 97 FNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVR 176 (787)
Q Consensus 97 ~~ells~~dg~V~~v~~lP~P~~~~~~d~F~~srpLLavV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVr 176 (787)
+..++..|.+.|..|++.|+ .++||..+. +++|+
T Consensus 5 ~~~~~~~h~~~V~~~~fsp~-------------~~~l~s~~~---------------------------------dg~v~ 38 (304)
T 2ynn_A 5 IKKTFSNRSDRVKGIDFHPT-------------EPWVLTTLY---------------------------------SGRVE 38 (304)
T ss_dssp CEEEEEEECSCEEEEEECSS-------------SSEEEEEET---------------------------------TSEEE
T ss_pred eEEeecCCCCceEEEEECCC-------------CCEEEEEcC---------------------------------CCcEE
Confidence 46788999999999999875 247765321 26899
Q ss_pred EEECCCCeEEEEEeCC-CcEEEEEecC--CeEEEEe-CCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEE
Q 003907 177 FYSFQSHCYEHVLRFR-SSVCMVRCSP--RIVAVGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAV 252 (787)
Q Consensus 177 lWdlktg~~v~tL~f~-s~V~sV~~s~--~~LaV~~-~~~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~~~~~lAl 252 (787)
|||+.+++.+.+++.+ .+|.++++++ ++|+++. ++.|++||+.+++.+.++..|+.+ ...+++
T Consensus 39 lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~-------------v~~~~~ 105 (304)
T 2ynn_A 39 LWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDY-------------IRSIAV 105 (304)
T ss_dssp EEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSC-------------EEEEEE
T ss_pred EEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEECCCCcEEEEEeCCCCc-------------EEEEEE
Confidence 9999999999999865 5899999987 6777765 568999999999999888877653 233444
Q ss_pred ccceEEEecCCceecCcceeccccCCCCCcCCCcCCCCCceeEeeehhhhhhhhcccceeecccccccCCCCCCCCcccC
Q 003907 253 GPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPN 332 (787)
Q Consensus 253 spr~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~~s~s 332 (787)
+| +. .
T Consensus 106 ~~-------~~---------------------------~----------------------------------------- 110 (304)
T 2ynn_A 106 HP-------TK---------------------------P----------------------------------------- 110 (304)
T ss_dssp CS-------SS---------------------------S-----------------------------------------
T ss_pred cC-------CC---------------------------C-----------------------------------------
Confidence 33 11 0
Q ss_pred CccccccccccccCCCceEEEEECCCC-cEEEEeccCCCCeEEEEECC-CCCEEEEEEcCCCEEEEEeCCCCcccCCCCC
Q 003907 333 SVWKVGRHAGADMDNAGIVVVKDFVTR-AIISQFKAHTSPISALCFDP-SGTLLVTASVYGNNINIFRIMPSCMRSGSGN 410 (787)
Q Consensus 333 ~~~~~~~~~~~s~~~dG~V~IwDl~s~-~~v~~~~aH~~pIsaLaFSp-dG~lLATaS~dG~~IrVWdi~~~~~~~~~g~ 410 (787)
.+++++.||+|+|||+.++ .....+.+|..+|.+++|+| ++.+|||++.|+ .|+|||+...
T Consensus 111 --------~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~-~v~iwd~~~~-------- 173 (304)
T 2ynn_A 111 --------YVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDR-TVKVWSLGQS-------- 173 (304)
T ss_dssp --------EEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEETTS-EEEEEETTCS--------
T ss_pred --------EEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeCCC-eEEEEECCCC--------
Confidence 0123456899999999887 55677899999999999999 689999999966 5999998531
Q ss_pred CccccCCcceEEEEEecccccccEEEEEEcc--CCCEEEEEeCCCeEEEEeCCCCCCccccccccC
Q 003907 411 HKYDWNSSHVHLYKLHRGITSATIQDICFSH--YSQWIAIVSSKGTCHVFVLSPFGGDSGFQTLSS 474 (787)
Q Consensus 411 ~~~~~~~s~~~l~~l~rG~~~a~I~slaFSp--Dg~~LAs~S~dgTVhIwdl~~~gg~~~~~~H~~ 474 (787)
.....+..+. ...|..++|+| |+++|++++.|++|+|||+........+..|..
T Consensus 174 ---------~~~~~~~~~~-~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~ 229 (304)
T 2ynn_A 174 ---------TPNFTLTTGQ-ERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMS 229 (304)
T ss_dssp ---------SCSEEEECCC-TTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECCSS
T ss_pred ---------CccceeccCC-cCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCCC
Confidence 1233444332 34588899986 789999999999999999987665666777753
No 28
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=99.90 E-value=3.3e-21 Score=212.80 Aligned_cols=273 Identities=15% Similarity=0.146 Sum_probs=187.5
Q ss_pred CeEEEEEecCcEEEEEccCCCceeEeee--eccCcEEEEEEecCCCCCCCCCCccccCcEEEEEEcCCCCCCCCCCCcCC
Q 003907 75 KQVLLLGYQNGFQVLDVEDASNFNELVS--KRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSH 152 (787)
Q Consensus 75 ~~vL~lG~~~G~qVWdv~~~~~~~ells--~~dg~V~~v~~lP~P~~~~~~d~F~~srpLLavV~~d~~~~~~~~~~~~~ 152 (787)
.++|++|.++.++|||++ ++++.+++. .|.+.|.+|++.|+. .+||+.+.
T Consensus 116 ~n~lAvgld~tV~lWd~~-tg~~~~~~~~~~~~~~V~sv~fspdg-------------~~lasgs~-------------- 167 (420)
T 4gga_A 116 GNVLAVALDNSVYLWSAS-SGDILQLLQMEQPGEYISSVAWIKEG-------------NYLAVGTS-------------- 167 (420)
T ss_dssp TSEEEEEETTEEEEEETT-TCCEEEEEECCSTTCCEEEEEECTTS-------------SEEEEEET--------------
T ss_pred CCEEEEEeCCEEEEEECC-CCCEEEEEEecCCCCcEEEEEECCCC-------------CEEEEEEC--------------
Confidence 569999998899999995 577877765 456789999999752 26765321
Q ss_pred CCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCC-CcEEEEEecCCeEEEEe-CCeEEEEECCCCc-eeEEEEe
Q 003907 153 LGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFR-SSVCMVRCSPRIVAVGL-ATQIYCFDALTLE-NKFSVLT 229 (787)
Q Consensus 153 ~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~v~tL~f~-s~V~sV~~s~~~LaV~~-~~~I~iwD~~T~e-~l~tl~t 229 (787)
+++|+|||+++++.+.++..+ ..|.++.+++++|+++. +..+++||..+.. .+.++..
T Consensus 168 -------------------Dg~v~iWd~~~~~~~~~~~~h~~~v~~~s~~~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~ 228 (420)
T 4gga_A 168 -------------------SAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSG 228 (420)
T ss_dssp -------------------TSCEEEEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEEC
T ss_pred -------------------CCeEEEEEcCCCcEEEEEeCCCCceEEEeeCCCEEEEEeCCCceeEeeecccceeeEEecc
Confidence 258999999999999999866 58999999999999876 4579999988754 3455555
Q ss_pred cCCcccCCCCccccccccceeEEcc--ceEEEecCCceecCcceeccccCCCCCcCCCcCCCCCceeEeeehhhhhhhhc
Q 003907 230 YPVPQLAGQGAVGINVGYGPMAVGP--RWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAA 307 (787)
Q Consensus 230 ~p~p~~~~~~~~~~~~~~~~lAlsp--r~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~sp~~g~lva~~a~d~sk~la~ 307 (787)
|... ...+.+.| ++|+.++.+..+ ..|+..+...... .+
T Consensus 229 h~~~-------------~~~~~~~~~g~~l~s~~~D~~v-----~i~~~~~~~~~~~-------~~-------------- 269 (420)
T 4gga_A 229 HSQE-------------VCGLRWAPDGRHLASGGNDNLV-----NVWPSAPGEGGWV-------PL-------------- 269 (420)
T ss_dssp CSSC-------------EEEEEECTTSSEEEEEETTSCE-----EEEESSCCSSCSC-------CS--------------
T ss_pred cccc-------------eeeeeecCCCCeeeeeeccccc-----eEEeeccccccce-------ee--------------
Confidence 5442 23456666 788887665211 1222221100000 00
Q ss_pred ccceeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEE
Q 003907 308 GLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTA 387 (787)
Q Consensus 308 G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~v~~~~aH~~pIsaLaFSpdG~lLATa 387 (787)
+.+..+ .+......+++.... ....+.+..||+|+|||+.+++.+..+..| ..+.++.|+|+++.|+++
T Consensus 270 ---~~~~~~------~~~V~~~~~~p~~~~-~la~~~gs~D~~I~iwd~~t~~~~~~~~~~-~~v~~~~~~~~~~~lv~~ 338 (420)
T 4gga_A 270 ---QTFTQH------QGAVKAVAWCPWQSN-VLATGGGTSDRHIRIWNVCSGACLSAVDAH-SQVCSILWSPHYKELISG 338 (420)
T ss_dssp ---EEECCC------SSCEEEEEECTTCTT-EEEEEECTTTCEEEEEETTTTEEEEEEECS-SCEEEEEEETTTTEEEEE
T ss_pred ---eeeccc------CCceeeeeeCCCccc-EEEEEeecCCCEEEEEeCCccccceeeccc-cceeeeeecCCCCeEEEE
Confidence 000000 000111111111111 011224568999999999999999988876 578899999999999987
Q ss_pred E--cCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEeCCCCC
Q 003907 388 S--VYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFG 464 (787)
Q Consensus 388 S--~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~~~g 464 (787)
+ .|| .|+|||+.. + .++.++. | |...|++|+|||||++||+++.|+||+|||+....
T Consensus 339 sg~~d~-~I~iwd~~~-------~----------~~v~~l~-g-H~~~V~~l~~spdg~~l~S~s~D~tvriWdv~~~~ 397 (420)
T 4gga_A 339 HGFAQN-QLVIWKYPT-------M----------AKVAELK-G-HTSRVLSLTMSPDGATVASAAADETLRLWRCFELD 397 (420)
T ss_dssp ECTTTC-CEEEEETTT-------C----------CEEEEEC-C-CSSCEEEEEECTTSSCEEEEETTTEEEEECCSCSS
T ss_pred EecCCC-EEEEEECCC-------C----------cEEEEEc-C-CCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCCC
Confidence 6 445 599999854 3 4777775 5 34679999999999999999999999999997643
No 29
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=99.90 E-value=1.3e-21 Score=208.13 Aligned_cols=263 Identities=11% Similarity=0.099 Sum_probs=179.9
Q ss_pred CCCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccC-CCceeEeeeeccCcEEEEEEecCCCCCCCCCCcccc
Q 003907 52 SEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVED-ASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKL 129 (787)
Q Consensus 52 ~~~~~~~v~wa~Fd~l~~~~~~~~~vL~lG~~~G-~qVWdv~~-~~~~~ells~~dg~V~~v~~lP~P~~~~~~d~F~~s 129 (787)
..+|++.|..+.|+. +++.|++|..+| ++|||++. .......+..|.++|.++.+.|+. .
T Consensus 7 ~~~h~~~v~~~~~s~-------~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-----------~ 68 (379)
T 3jrp_A 7 ANAHNELIHDAVLDY-------YGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPK-----------F 68 (379)
T ss_dssp EEECCCCEEEEEECS-------SSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGG-----------G
T ss_pred ecCCcccEEEEEEcC-------CCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCC-----------C
Confidence 567899999999974 366888888776 99999963 234555677899999999998531 1
Q ss_pred CcEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCe--EEEEEe-CCCcEEEEEecCC---
Q 003907 130 HPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHC--YEHVLR-FRSSVCMVRCSPR--- 203 (787)
Q Consensus 130 rpLLavV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~--~v~tL~-f~s~V~sV~~s~~--- 203 (787)
..+|++++. +++|++||+++++ .+..+. +...|.++++++.
T Consensus 69 ~~~l~s~~~---------------------------------dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 115 (379)
T 3jrp_A 69 GTILASCSY---------------------------------DGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYG 115 (379)
T ss_dssp CSEEEEEET---------------------------------TSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGC
T ss_pred CCEEEEecc---------------------------------CCEEEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCC
Confidence 236655332 2589999999997 666665 4468999999864
Q ss_pred -eEEEEe-CCeEEEEECCCCceeE--EEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCcceeccccCCC
Q 003907 204 -IVAVGL-ATQIYCFDALTLENKF--SVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTP 279 (787)
Q Consensus 204 -~LaV~~-~~~I~iwD~~T~e~l~--tl~t~p~p~~~~~~~~~~~~~~~~lAlspr~LAyas~~~~l~~~g~~s~q~lt~ 279 (787)
+|+++. ++.|++||+.+.+... .+..+..+ ...++++|...+.....
T Consensus 116 ~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~-------------v~~~~~~~~~~~~~~~~---------------- 166 (379)
T 3jrp_A 116 PLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIG-------------VNSASWAPATIEEDGEH---------------- 166 (379)
T ss_dssp SEEEEEETTSEEEEEECCTTSCCCEEEEECCTTC-------------EEEEEECCCC-----------------------
T ss_pred CEEEEecCCCcEEEEecCCCCceeeEEecCCCCc-------------eEEEEEcCccccccccc----------------
Confidence 566654 6689999998875333 33333331 22344433111100000
Q ss_pred CCcCCCcCCCCCceeEeeehhhhhhhhcccceeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECCCC
Q 003907 280 SGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTR 359 (787)
Q Consensus 280 ~~~s~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~ 359 (787)
... ..+..++.+..||.|+|||+.++
T Consensus 167 -----~~~-------------------------------------------------~~~~~l~~~~~dg~i~i~d~~~~ 192 (379)
T 3jrp_A 167 -----NGT-------------------------------------------------KESRKFVTGGADNLVKIWKYNSD 192 (379)
T ss_dssp ---------------------------------------------------------CTTCEEEEEETTSCEEEEEEETT
T ss_pred -----cCC-------------------------------------------------CCCCEEEEEeCCCeEEEEEecCC
Confidence 000 00011234567899999999875
Q ss_pred c----EEEEeccCCCCeEEEEECCC---CCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccc
Q 003907 360 A----IISQFKAHTSPISALCFDPS---GTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSA 432 (787)
Q Consensus 360 ~----~v~~~~aH~~pIsaLaFSpd---G~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a 432 (787)
+ .+..+.+|..+|.+++|+|+ |++||+++.||. |+|||+.... . ......+....+..
T Consensus 193 ~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~-i~iwd~~~~~-----~---------~~~~~~~~~~~~~~ 257 (379)
T 3jrp_A 193 AQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRT-CIIWTQDNEQ-----G---------PWKKTLLKEEKFPD 257 (379)
T ss_dssp TTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSC-EEEEEESSTT-----S---------CCEEEESSSSCCSS
T ss_pred CcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCE-EEEEeCCCCC-----c---------cceeeeeccccCCC
Confidence 4 56778899999999999999 999999999776 9999985410 0 01111222222345
Q ss_pred cEEEEEEccCCCEEEEEeCCCeEEEEeCCCC
Q 003907 433 TIQDICFSHYSQWIAIVSSKGTCHVFVLSPF 463 (787)
Q Consensus 433 ~I~slaFSpDg~~LAs~S~dgTVhIwdl~~~ 463 (787)
.|.+++|+|||++|++++.||+|+||++...
T Consensus 258 ~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~ 288 (379)
T 3jrp_A 258 VLWRASWSLSGNVLALSGGDNKVTLWKENLE 288 (379)
T ss_dssp CEEEEEECSSSCCEEEEESSSSEEEEEEEET
T ss_pred cEEEEEEcCCCCEEEEecCCCcEEEEeCCCC
Confidence 7999999999999999999999999999853
No 30
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=99.90 E-value=1.3e-21 Score=211.06 Aligned_cols=293 Identities=12% Similarity=0.080 Sum_probs=196.9
Q ss_pred CCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCceeEeeeeccCcEEEEEEecCCCCCCCCCCccccCcEE
Q 003907 55 LKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFL 133 (787)
Q Consensus 55 ~~~~v~wa~Fd~l~~~~~~~~~vL~lG~~~G-~qVWdv~~~~~~~ells~~dg~V~~v~~lP~P~~~~~~d~F~~srpLL 133 (787)
+++.|..+.|.. +++.|++|..+| ++|||. .++....+..|.++|..+.+.|+. .+|
T Consensus 107 ~~~~v~~~~~s~-------~~~~l~~~~~dg~i~i~~~--~~~~~~~~~~~~~~v~~~~~~~~~-------------~~l 164 (425)
T 1r5m_A 107 TTNQVTCLAWSH-------DGNSIVTGVENGELRLWNK--TGALLNVLNFHRAPIVSVKWNKDG-------------THI 164 (425)
T ss_dssp -CBCEEEEEECT-------TSSEEEEEETTSCEEEEET--TSCEEEEECCCCSCEEEEEECTTS-------------SEE
T ss_pred CCCceEEEEEcC-------CCCEEEEEeCCCeEEEEeC--CCCeeeeccCCCccEEEEEECCCC-------------CEE
Confidence 466899888864 367888888877 999993 466777788899999999998742 256
Q ss_pred EEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCCc----------------EEE
Q 003907 134 LVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRSS----------------VCM 197 (787)
Q Consensus 134 avV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~v~tL~f~s~----------------V~s 197 (787)
++++. +++|++||+++++.+..+..+.. |.+
T Consensus 165 ~~~~~---------------------------------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (425)
T 1r5m_A 165 ISMDV---------------------------------ENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVD 211 (425)
T ss_dssp EEEET---------------------------------TCCEEEEETTTTEEEEEECCC---------------CCCBSC
T ss_pred EEEec---------------------------------CCeEEEEECCCCcEEEEeeccccCccceeeccccCCcceeeE
Confidence 54331 25799999999999999987643 788
Q ss_pred EEecC-CeEEEE-eCCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEcc--ceEEEecCCceecCcceec
Q 003907 198 VRCSP-RIVAVG-LATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP--RWLAYASNTLLLSNSGRLS 273 (787)
Q Consensus 198 V~~s~-~~LaV~-~~~~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~~~~~lAlsp--r~LAyas~~~~l~~~g~~s 273 (787)
+.+++ ..++++ .++.|++||+.+++.+..+..+..+ ...++++| ++|++++.+..+ ..
T Consensus 212 ~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~-------------i~~~~~~~~~~~l~~~~~d~~i-----~i 273 (425)
T 1r5m_A 212 VEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGP-------------ISVLEFNDTNKLLLSASDDGTL-----RI 273 (425)
T ss_dssp CEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSC-------------EEEEEEETTTTEEEEEETTSCE-----EE
T ss_pred EEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCc-------------eEEEEECCCCCEEEEEcCCCEE-----EE
Confidence 88876 455554 4568999999999888887765542 35678887 788887654211 12
Q ss_pred cccCCCCCcCCCcCCCCCceeEeeehhhhhhhhcccceeecccccccCCCCCCCCcccCCccccccccccccCCCceEEE
Q 003907 274 PQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVV 353 (787)
Q Consensus 274 ~q~lt~~~~s~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~I 353 (787)
|+..+.... +.+..+ ......+.++++. .++.+..+|.|++
T Consensus 274 ~d~~~~~~~----------------------------~~~~~~------~~~i~~~~~~~~~-----~l~~~~~d~~i~i 314 (425)
T 1r5m_A 274 WHGGNGNSQ----------------------------NCFYGH------SQSIVSASWVGDD-----KVISCSMDGSVRL 314 (425)
T ss_dssp ECSSSBSCS----------------------------EEECCC------SSCEEEEEEETTT-----EEEEEETTSEEEE
T ss_pred EECCCCccc----------------------------eEecCC------CccEEEEEECCCC-----EEEEEeCCCcEEE
Confidence 222111000 011000 0001111222221 2346678999999
Q ss_pred EECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcc--cCCCCCCccccCC-cceEEEEEecccc
Q 003907 354 KDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCM--RSGSGNHKYDWNS-SHVHLYKLHRGIT 430 (787)
Q Consensus 354 wDl~s~~~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~--~~~~g~~~~~~~~-s~~~l~~l~rG~~ 430 (787)
||+.+++.+..+..|..+|.+++|+|+|++||+++.+|. |+|||+..... ....+.....+.. ....+..+. ++.
T Consensus 315 ~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~-i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 392 (425)
T 1r5m_A 315 WSLKQNTLLALSIVDGVPIFAGRISQDGQKYAVAFMDGQ-VNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQ-SSQ 392 (425)
T ss_dssp EETTTTEEEEEEECTTCCEEEEEECTTSSEEEEEETTSC-EEEEECHHHHC--------------CEECCEEEEEC-CTT
T ss_pred EECCCCcEeEecccCCccEEEEEEcCCCCEEEEEECCCe-EEEEECCCCccceeeeecccccccCcccchhhhhhc-Ccc
Confidence 999999999999999999999999999999999999775 99999854110 0000000000000 001445554 333
Q ss_pred cc-cEEEEEEccCCCEEEEEeCCCeEEEEeCC
Q 003907 431 SA-TIQDICFSHYSQWIAIVSSKGTCHVFVLS 461 (787)
Q Consensus 431 ~a-~I~slaFSpDg~~LAs~S~dgTVhIwdl~ 461 (787)
.. .|.+++|+||+++|++++.||+|+||+++
T Consensus 393 ~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~ 424 (425)
T 1r5m_A 393 DNDYIFDLSWNCAGNKISVAYSLQEGSVVAIP 424 (425)
T ss_dssp CCCCEEEEEECTTSSEEEEEESSSCCEEEECC
T ss_pred cCCceEEEEccCCCceEEEEecCceEEEEeec
Confidence 23 79999999999999999999999999985
No 31
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.90 E-value=1.5e-21 Score=206.18 Aligned_cols=292 Identities=15% Similarity=0.129 Sum_probs=194.2
Q ss_pred CCCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCcee-EeeeeccCcEEEEEEecCCCCCCCCCCcccc
Q 003907 52 SEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFN-ELVSKRDGPVSFLQMQPFPVKDDGCEGFRKL 129 (787)
Q Consensus 52 ~~~~~~~v~wa~Fd~l~~~~~~~~~vL~lG~~~G-~qVWdv~~~~~~~-ells~~dg~V~~v~~lP~P~~~~~~d~F~~s 129 (787)
..+|++.|..+.|.. +..+++.|++|..+| ++|||++..+... ..+..|.++|..+.+.|+.
T Consensus 35 ~~~h~~~v~~~~~~~----~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~------------ 98 (368)
T 3mmy_A 35 TSSPDDSIGCLSFSP----PTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDG------------ 98 (368)
T ss_dssp SSCCSSCEEEEEECC----TTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTS------------
T ss_pred ccCCCCceEEEEEcC----CCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCC------------
Confidence 567899999999974 211257899998877 8999997644443 6788899999999998742
Q ss_pred CcEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCCcEEEEEe--cC--CeE
Q 003907 130 HPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRSSVCMVRC--SP--RIV 205 (787)
Q Consensus 130 rpLLavV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~v~tL~f~s~V~sV~~--s~--~~L 205 (787)
.+|++++. +++|++||+++++.+....+...|.++.+ ++ ++|
T Consensus 99 -~~l~s~~~---------------------------------dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l 144 (368)
T 3mmy_A 99 -SKVFTASC---------------------------------DKTAKMWDLSSNQAIQIAQHDAPVKTIHWIKAPNYSCV 144 (368)
T ss_dssp -SEEEEEET---------------------------------TSEEEEEETTTTEEEEEEECSSCEEEEEEEECSSCEEE
T ss_pred -CEEEEEcC---------------------------------CCcEEEEEcCCCCceeeccccCceEEEEEEeCCCCCEE
Confidence 26655331 25899999999999998888899999999 66 456
Q ss_pred EEEe-CCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCcceeccccCCCCCcCC
Q 003907 206 AVGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSP 284 (787)
Q Consensus 206 aV~~-~~~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~~~~~lAlspr~LAyas~~~~l~~~g~~s~q~lt~~~~s~ 284 (787)
+++. ++.|++||+.+++.+.++..+... ..+.+.+..++.+..+. ....|+.....
T Consensus 145 ~~~~~dg~i~vwd~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~-----~i~~~~~~~~~---- 201 (368)
T 3mmy_A 145 MTGSWDKTLKFWDTRSSNPMMVLQLPERC--------------YCADVIYPMAVVATAER-----GLIVYQLENQP---- 201 (368)
T ss_dssp EEEETTSEEEEECSSCSSCSEEEECSSCE--------------EEEEEETTEEEEEEGGG-----CEEEEECSSSC----
T ss_pred EEccCCCcEEEEECCCCcEEEEEecCCCc--------------eEEEecCCeeEEEeCCC-----cEEEEEecccc----
Confidence 6654 678999999999988888754321 12233333333332211 01112111100
Q ss_pred CcCCCCCceeEeeehhhhhhhhcccceeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECCCC---cE
Q 003907 285 STSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTR---AI 361 (787)
Q Consensus 285 s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~---~~ 361 (787)
..... +.... .....+. ....+...... .++.+..+|.|+|||+... ..
T Consensus 202 -------~~~~~--------~~~~~--~~~~~~~---------~~~~~~~~~~~--~~~~~~~dg~i~i~~~~~~~~~~~ 253 (368)
T 3mmy_A 202 -------SEFRR--------IESPL--KHQHRCV---------AIFKDKQNKPT--GFALGSIEGRVAIHYINPPNPAKD 253 (368)
T ss_dssp -------EEEEE--------CCCSC--SSCEEEE---------EEEECTTSCEE--EEEEEETTSEEEEEESSCSCHHHH
T ss_pred -------chhhh--------ccccc--cCCCceE---------EEcccCCCCCC--eEEEecCCCcEEEEecCCCCcccc
Confidence 00000 00000 0000000 00000101111 1456788999999999987 56
Q ss_pred EEEeccCCC------------CeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEeccc
Q 003907 362 ISQFKAHTS------------PISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGI 429 (787)
Q Consensus 362 v~~~~aH~~------------pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~ 429 (787)
+..+.+|.. +|.+++|+|+|++||+++.||. |+|||+.. + ..+..+. +
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~-i~iwd~~~-------~----------~~~~~~~-~- 313 (368)
T 3mmy_A 254 NFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGR-FSFWDKDA-------R----------TKLKTSE-Q- 313 (368)
T ss_dssp SEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSC-EEEEETTT-------T----------EEEEECC-C-
T ss_pred ceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCe-EEEEECCC-------C----------cEEEEec-C-
Confidence 778888876 7999999999999999999776 99999854 2 4555554 3
Q ss_pred ccccEEEEEEccCCCEEEEEeCCCeEEEEeCCCCC
Q 003907 430 TSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFG 464 (787)
Q Consensus 430 ~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~~~g 464 (787)
+...|++++|+|||++|++++.|+..+.|++-...
T Consensus 314 ~~~~v~~~~~s~~g~~l~~~s~d~~~~~~~~~~~~ 348 (368)
T 3mmy_A 314 LDQPISACCFNHNGNIFAYASSYDWSKGHEFYNPQ 348 (368)
T ss_dssp CSSCEEEEEECTTSSCEEEEECCCSTTCGGGCCTT
T ss_pred CCCCceEEEECCCCCeEEEEecccccccccccCCC
Confidence 34579999999999999999999977777665433
No 32
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=99.90 E-value=7e-21 Score=201.20 Aligned_cols=263 Identities=11% Similarity=0.077 Sum_probs=188.3
Q ss_pred CCCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCceeEeeeeccCcEEEEEEecCCCCCCCCCCccccC
Q 003907 52 SEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLH 130 (787)
Q Consensus 52 ~~~~~~~v~wa~Fd~l~~~~~~~~~vL~lG~~~G-~qVWdv~~~~~~~ells~~dg~V~~v~~lP~P~~~~~~d~F~~sr 130 (787)
..+|++.|..+.|.. +++.|++|..+| ++|||+.. ++....+..|.++|.++++.|+.
T Consensus 28 l~~h~~~v~~~~~s~-------~~~~l~~~~~dg~i~vwd~~~-~~~~~~~~~h~~~v~~~~~~~~~------------- 86 (369)
T 3zwl_B 28 LTGHERPLTQVKYNK-------EGDLLFSCSKDSSASVWYSLN-GERLGTLDGHTGTIWSIDVDCFT------------- 86 (369)
T ss_dssp EECCSSCEEEEEECT-------TSCEEEEEESSSCEEEEETTT-CCEEEEECCCSSCEEEEEECTTS-------------
T ss_pred EEEeeceEEEEEEcC-------CCCEEEEEeCCCEEEEEeCCC-chhhhhhhhcCCcEEEEEEcCCC-------------
Confidence 467899999999974 366888888776 99999964 66777888899999999998742
Q ss_pred cEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCCcEEEEEecC--CeEEEE
Q 003907 131 PFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRSSVCMVRCSP--RIVAVG 208 (787)
Q Consensus 131 pLLavV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~v~tL~f~s~V~sV~~s~--~~LaV~ 208 (787)
.+|++++. +++|++||+++++.+..+.+...|.++.+++ +.|+++
T Consensus 87 ~~l~s~~~---------------------------------dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 133 (369)
T 3zwl_B 87 KYCVTGSA---------------------------------DYSIKLWDVSNGQCVATWKSPVPVKRVEFSPCGNYFLAI 133 (369)
T ss_dssp SEEEEEET---------------------------------TTEEEEEETTTCCEEEEEECSSCEEEEEECTTSSEEEEE
T ss_pred CEEEEEeC---------------------------------CCeEEEEECCCCcEEEEeecCCCeEEEEEccCCCEEEEe
Confidence 26655331 2689999999999999999889999999988 677776
Q ss_pred eC------CeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCcceeccccCCCCCc
Q 003907 209 LA------TQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGV 282 (787)
Q Consensus 209 ~~------~~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~~~~~lAlspr~LAyas~~~~l~~~g~~s~q~lt~~~~ 282 (787)
.. +.|++||+.+.+....+....... ...+ .... +
T Consensus 134 ~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~--------------~~~~-------~~~~------~------------ 174 (369)
T 3zwl_B 134 LDNVMKNPGSINIYEIERDSATHELTKVSEEP--------------IHKI-------ITHE------G------------ 174 (369)
T ss_dssp ECCBTTBCCEEEEEEEEECTTTCCEEEECSSC--------------SEEE-------ECCT------T------------
T ss_pred cCCccCCCCEEEEEEecCCccceeecccccce--------------eeec-------cCCc------C------------
Confidence 54 589999987765443333211100 0000 0000 0
Q ss_pred CCCcCCCCCceeEeeehhhhhhhhcccceeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECCC-CcE
Q 003907 283 SPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVT-RAI 361 (787)
Q Consensus 283 s~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s-~~~ 361 (787)
...+ ..+.++++. ..++.+..+|.|++||+.+ .+.
T Consensus 175 --------~~~~--------------------------------~~~~~~~~~----~~l~~~~~dg~i~i~d~~~~~~~ 210 (369)
T 3zwl_B 175 --------LDAA--------------------------------TVAGWSTKG----KYIIAGHKDGKISKYDVSNNYEY 210 (369)
T ss_dssp --------CCCE--------------------------------EEEEECGGG----CEEEEEETTSEEEEEETTTTTEE
T ss_pred --------ccce--------------------------------eEEEEcCCC----CEEEEEcCCCEEEEEECCCCcEe
Confidence 0000 000011111 1123456789999999998 788
Q ss_pred EEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEcc
Q 003907 362 ISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSH 441 (787)
Q Consensus 362 v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSp 441 (787)
+..+..|..+|.+++|+|+|++|++++.|| .|+|||+.. + ..+..+. ....+.+++|+|
T Consensus 211 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-~i~v~d~~~-------~----------~~~~~~~---~~~~~~~~~~~~ 269 (369)
T 3zwl_B 211 VDSIDLHEKSISDMQFSPDLTYFITSSRDT-NSFLVDVST-------L----------QVLKKYE---TDCPLNTAVITP 269 (369)
T ss_dssp EEEEECCSSCEEEEEECTTSSEEEEEETTS-EEEEEETTT-------C----------CEEEEEE---CSSCEEEEEECS
T ss_pred EEEEecCCCceeEEEECCCCCEEEEecCCc-eEEEEECCC-------C----------ceeeeec---CCCCceeEEecC
Confidence 999999999999999999999999999966 599999854 2 3455554 235699999999
Q ss_pred CCCEEEEEeCCC--------------eEEEEeCCCCCCccccccc
Q 003907 442 YSQWIAIVSSKG--------------TCHVFVLSPFGGDSGFQTL 472 (787)
Q Consensus 442 Dg~~LAs~S~dg--------------TVhIwdl~~~gg~~~~~~H 472 (787)
++++|++++.++ ++++||+........+..|
T Consensus 270 ~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~ 314 (369)
T 3zwl_B 270 LKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGH 314 (369)
T ss_dssp SSSEEEEEECCC-------------CEEEEEETTTCCEEEEEECC
T ss_pred CCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheecc
Confidence 999999999998 7888888765444444445
No 33
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=99.90 E-value=5.3e-22 Score=219.53 Aligned_cols=254 Identities=16% Similarity=0.193 Sum_probs=185.8
Q ss_pred eEeeeeccCcEEEEEEecCCCCCCCCCCccccCcEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEE
Q 003907 98 NELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRF 177 (787)
Q Consensus 98 ~ells~~dg~V~~v~~lP~P~~~~~~d~F~~srpLLavV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVrl 177 (787)
...+..|.++|.++.+.|+ .++|+..+. +++|+|
T Consensus 101 ~~~l~gh~~~V~~~~~~p~-------------~~~l~s~s~---------------------------------Dg~i~v 134 (410)
T 1vyh_C 101 KYALSGHRSPVTRVIFHPV-------------FSVMVSASE---------------------------------DATIKV 134 (410)
T ss_dssp SCEEECCSSCEEEEEECSS-------------SSEEEEEES---------------------------------SSCEEE
T ss_pred eEeecccCCcEEEEEEcCC-------------CCEEEEEeC---------------------------------CCeEEE
Confidence 4467789999999999874 236654221 258999
Q ss_pred EECCCCeEEEEEeCC-CcEEEEEecC--CeEEEEe-CCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEc
Q 003907 178 YSFQSHCYEHVLRFR-SSVCMVRCSP--RIVAVGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVG 253 (787)
Q Consensus 178 Wdlktg~~v~tL~f~-s~V~sV~~s~--~~LaV~~-~~~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~~~~~lAls 253 (787)
||+.+++.+++++.+ ..|.+|+|++ ++|++|. ++.|++||+.+++++.++..|..+ ...++++
T Consensus 135 wd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~-------------V~~v~~~ 201 (410)
T 1vyh_C 135 WDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHN-------------VSSVSIM 201 (410)
T ss_dssp EETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEECCCCCSSC-------------EEEEEEC
T ss_pred EECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCCC-------------EEEEEEe
Confidence 999999999999865 5899999987 6777765 568999999999988887766553 3568888
Q ss_pred c--ceEEEecCCceecCcceeccccCCCCCcCCCcCCCCCceeEeeehhhhhhhhcccceeecccccccCCCCCCCCccc
Q 003907 254 P--RWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSP 331 (787)
Q Consensus 254 p--r~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~~s~ 331 (787)
| ++|+.++.+..+ ..|+..++. .+ +++.++.. ......+
T Consensus 202 p~~~~l~s~s~D~~i-----~~wd~~~~~------------~~----------------~~~~~h~~------~v~~~~~ 242 (410)
T 1vyh_C 202 PNGDHIVSASRDKTI-----KMWEVQTGY------------CV----------------KTFTGHRE------WVRMVRP 242 (410)
T ss_dssp SSSSEEEEEETTSEE-----EEEETTTCC------------EE----------------EEEECCSS------CEEEEEE
T ss_pred CCCCEEEEEeCCCeE-----EEEECCCCc------------EE----------------EEEeCCCc------cEEEEEE
Confidence 7 788888765321 124332211 00 11111110 0111122
Q ss_pred CCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCC--------------------CCEEEEEEcCC
Q 003907 332 NSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPS--------------------GTLLVTASVYG 391 (787)
Q Consensus 332 s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~v~~~~aH~~pIsaLaFSpd--------------------G~lLATaS~dG 391 (787)
+++. ..+++++.||+|+|||+.+++....+.+|..+|.+++|+|+ |.+|+|++.||
T Consensus 243 ~~~g----~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~ 318 (410)
T 1vyh_C 243 NQDG----TLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDK 318 (410)
T ss_dssp CTTS----SEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTS
T ss_pred CCCC----CEEEEEcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCC
Confidence 2222 23456788999999999999999999999999999999996 77999999966
Q ss_pred CEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEeCCCCCCcccccc
Q 003907 392 NNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQT 471 (787)
Q Consensus 392 ~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~~~gg~~~~~~ 471 (787)
.|+|||+.. + ..+..+. | +...|.+++|+|||++|++++.|++|+|||+........+..
T Consensus 319 -~i~iwd~~~-------~----------~~~~~~~-~-h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~ 378 (410)
T 1vyh_C 319 -TIKMWDVST-------G----------MCLMTLV-G-HDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNA 378 (410)
T ss_dssp -EEEEEETTT-------T----------EEEEEEE-C-CSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEEC
T ss_pred -eEEEEECCC-------C----------ceEEEEE-C-CCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEcC
Confidence 599999864 3 4666664 4 345799999999999999999999999999987666666666
Q ss_pred cc
Q 003907 472 LS 473 (787)
Q Consensus 472 H~ 473 (787)
|.
T Consensus 379 h~ 380 (410)
T 1vyh_C 379 HE 380 (410)
T ss_dssp CS
T ss_pred CC
Confidence 64
No 34
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=99.90 E-value=8e-21 Score=198.63 Aligned_cols=275 Identities=13% Similarity=0.058 Sum_probs=189.1
Q ss_pred CCCCcEEEEEEeeccCCCCCCCeEEEEEecCcEEEEEccCCCceeEe--ee--eccCcEEEEEEecCCCCCCCCCCcccc
Q 003907 54 DLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNGFQVLDVEDASNFNEL--VS--KRDGPVSFLQMQPFPVKDDGCEGFRKL 129 (787)
Q Consensus 54 ~~~~~v~wa~Fd~l~~~~~~~~~vL~lG~~~G~qVWdv~~~~~~~el--ls--~~dg~V~~v~~lP~P~~~~~~d~F~~s 129 (787)
+|.+.|..+.|.. +++.|++|.++.++|||++.......+ +. .|.++|.++.+.|+.
T Consensus 49 ~h~~~v~~~~~~~-------~~~~l~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~------------ 109 (337)
T 1gxr_A 49 NHGEVVCAVTISN-------PTRHVYTGGKGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDG------------ 109 (337)
T ss_dssp CCSSCCCEEEECS-------SSSEEEEECBSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTS------------
T ss_pred cCCCceEEEEEec-------CCcEEEEcCCCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCC------------
Confidence 4677788888863 467888888656999999764432222 22 678899999998742
Q ss_pred CcEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCe--EEEEEeCC-CcEEEEEecC--Ce
Q 003907 130 HPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHC--YEHVLRFR-SSVCMVRCSP--RI 204 (787)
Q Consensus 130 rpLLavV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~--~v~tL~f~-s~V~sV~~s~--~~ 204 (787)
.+|++.+. .++|++||+++++ ....+..+ ..|.++++++ ++
T Consensus 110 -~~l~~~~~---------------------------------d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 155 (337)
T 1gxr_A 110 -CTLIVGGE---------------------------------ASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKV 155 (337)
T ss_dssp -SEEEEEES---------------------------------SSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSE
T ss_pred -CEEEEEcC---------------------------------CCcEEEEECCCCCcceeeecccCCCceEEEEECCCCCE
Confidence 25654321 2589999999987 55555544 5899999987 57
Q ss_pred EEEEe-CCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEcc--ceEEEecCCceecCcceeccccCCCCC
Q 003907 205 VAVGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP--RWLAYASNTLLLSNSGRLSPQNLTPSG 281 (787)
Q Consensus 205 LaV~~-~~~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~~~~~lAlsp--r~LAyas~~~~l~~~g~~s~q~lt~~~ 281 (787)
|+++. ++.|++||+.+++.+.++..|..+ ...++++| ++|+.++.+..+ ..|+..+.
T Consensus 156 l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~-------------i~~~~~~~~~~~l~~~~~dg~i-----~~~d~~~~-- 215 (337)
T 1gxr_A 156 CFSCCSDGNIAVWDLHNQTLVRQFQGHTDG-------------ASCIDISNDGTKLWTGGLDNTV-----RSWDLREG-- 215 (337)
T ss_dssp EEEEETTSCEEEEETTTTEEEEEECCCSSC-------------EEEEEECTTSSEEEEEETTSEE-----EEEETTTT--
T ss_pred EEEEeCCCcEEEEeCCCCceeeeeecccCc-------------eEEEEECCCCCEEEEEecCCcE-----EEEECCCC--
Confidence 77765 567999999999888887665442 35678877 688887654211 12222111
Q ss_pred cCCCcCCCCCceeEeeehhhhhhhhcccceeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECCCCcE
Q 003907 282 VSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAI 361 (787)
Q Consensus 282 ~s~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~ 361 (787)
...... . ..+......++++.+ .++.+..+|.|++||+.+++.
T Consensus 216 ----------~~~~~~----------------~-------~~~~v~~~~~s~~~~----~l~~~~~~~~i~~~~~~~~~~ 258 (337)
T 1gxr_A 216 ----------RQLQQH----------------D-------FTSQIFSLGYCPTGE----WLAVGMESSNVEVLHVNKPDK 258 (337)
T ss_dssp ----------EEEEEE----------------E-------CSSCEEEEEECTTSS----EEEEEETTSCEEEEETTSSCE
T ss_pred ----------ceEeee----------------c-------CCCceEEEEECCCCC----EEEEEcCCCcEEEEECCCCCe
Confidence 110000 0 000011122222222 234567789999999998875
Q ss_pred EEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEcc
Q 003907 362 ISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSH 441 (787)
Q Consensus 362 v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSp 441 (787)
..+..|..+|.+++|+|+|++|++++.|| .|++||+.. + ..+.... +...|.+++|+|
T Consensus 259 -~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-~i~~~~~~~-------~----------~~~~~~~---~~~~v~~~~~s~ 316 (337)
T 1gxr_A 259 -YQLHLHESCVLSLKFAYCGKWFVSTGKDN-LLNAWRTPY-------G----------ASIFQSK---ESSSVLSCDISV 316 (337)
T ss_dssp -EEECCCSSCEEEEEECTTSSEEEEEETTS-EEEEEETTT-------C----------CEEEEEE---CSSCEEEEEECT
T ss_pred -EEEcCCccceeEEEECCCCCEEEEecCCC-cEEEEECCC-------C----------eEEEEec---CCCcEEEEEECC
Confidence 46789999999999999999999999966 599999854 2 2333332 345799999999
Q ss_pred CCCEEEEEeCCCeEEEEeC
Q 003907 442 YSQWIAIVSSKGTCHVFVL 460 (787)
Q Consensus 442 Dg~~LAs~S~dgTVhIwdl 460 (787)
|+++|++++.||+|+||++
T Consensus 317 ~~~~l~~~~~dg~i~iw~~ 335 (337)
T 1gxr_A 317 DDKYIVTGSGDKKATVYEV 335 (337)
T ss_dssp TSCEEEEEETTSCEEEEEE
T ss_pred CCCEEEEecCCCeEEEEEE
Confidence 9999999999999999997
No 35
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.90 E-value=4.5e-21 Score=199.49 Aligned_cols=280 Identities=12% Similarity=0.126 Sum_probs=179.0
Q ss_pred CCCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCC---ceeEeeeeccCcEEEEEEecCCCCCCCCCCcc
Q 003907 52 SEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDAS---NFNELVSKRDGPVSFLQMQPFPVKDDGCEGFR 127 (787)
Q Consensus 52 ~~~~~~~v~wa~Fd~l~~~~~~~~~vL~lG~~~G-~qVWdv~~~~---~~~ells~~dg~V~~v~~lP~P~~~~~~d~F~ 127 (787)
..+|++.|..+.|+. +++.|++|..+| ++|||++... .....+..|.++|.++++.|..
T Consensus 7 ~~gH~~~v~~~~~~~-------~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~---------- 69 (351)
T 3f3f_A 7 DSGHDDLVHDVVYDF-------YGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPE---------- 69 (351)
T ss_dssp ECCCSSCEEEEEECS-------SSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGG----------
T ss_pred CcccccceeEEEEcC-------CCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCC----------
Confidence 467999999999974 356888888877 9999997543 2445567788999999998620
Q ss_pred ccCcEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCC---------eEEEEEeC-CCcEEE
Q 003907 128 KLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSH---------CYEHVLRF-RSSVCM 197 (787)
Q Consensus 128 ~srpLLavV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg---------~~v~tL~f-~s~V~s 197 (787)
...+|++.+. +++|++||++++ +.+..+.. ...|.+
T Consensus 70 -d~~~l~s~~~---------------------------------dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 115 (351)
T 3f3f_A 70 -YGRIIASASY---------------------------------DKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYS 115 (351)
T ss_dssp -GCSEEEEEET---------------------------------TSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEE
T ss_pred -CCCEEEEEcC---------------------------------CCeEEEEecCCCcccccccCcceeeeecccCCceeE
Confidence 1226655331 258999999987 66777764 468999
Q ss_pred EEecCC----eEEEEe-CCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCccee
Q 003907 198 VRCSPR----IVAVGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRL 272 (787)
Q Consensus 198 V~~s~~----~LaV~~-~~~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~~~~~lAlspr~LAyas~~~~l~~~g~~ 272 (787)
+++++. +|+++. ++.|++||+.+++.+..+...... ..+.+ .... .
T Consensus 116 ~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~--------------~~~~~-------~~~~-------~- 166 (351)
T 3f3f_A 116 VKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEM--------------KVLSI-------PPAN-------H- 166 (351)
T ss_dssp EEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEE--------------ESCSC-------CCSS-------C-
T ss_pred EEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccc--------------ccccc-------ccCC-------c-
Confidence 999864 666654 568999999988754433210000 00000 0000 0
Q ss_pred ccccCCCCCcCCCcCCCCCceeEeeehhhhhhhhcccceeecccccccCCCCCCCCcccCCccccccccccccCCCceEE
Q 003907 273 SPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVV 352 (787)
Q Consensus 273 s~q~lt~~~~s~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~ 352 (787)
..... +-.+.|+. .....++.+..++.+.
T Consensus 167 ----------------~~~~~-----------------------~~~~~p~~------------~~~~~l~~~~~~~~~~ 195 (351)
T 3f3f_A 167 ----------------LQSDF-----------------------CLSWCPSR------------FSPEKLAVSALEQAII 195 (351)
T ss_dssp ----------------SCCCE-----------------------EEEECCCS------------SSCCEEEEEETTEEEE
T ss_pred ----------------cccee-----------------------EEEeccCC------------CCCcEEEEecCCCcEE
Confidence 00000 00000000 0001123456788888
Q ss_pred EEECCCCcE--EEEeccCCCCeEEEEECCCC----CEEEEEEcCCCEEEEEeCCCCcccC--------------------
Q 003907 353 VKDFVTRAI--ISQFKAHTSPISALCFDPSG----TLLVTASVYGNNINIFRIMPSCMRS-------------------- 406 (787)
Q Consensus 353 IwDl~s~~~--v~~~~aH~~pIsaLaFSpdG----~lLATaS~dG~~IrVWdi~~~~~~~-------------------- 406 (787)
+|+...++. +..+.+|..+|.+++|+|+| ++|+|++.||. |+|||+.......
T Consensus 196 ~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (351)
T 3f3f_A 196 YQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGR-IRIFKITEKLSPLASEESLTNSNMFDNSADVDM 274 (351)
T ss_dssp EEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSC-EEEEEEEECC-----------------------
T ss_pred EEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCe-EEEEeCCCCcCccccCCcccceeccCCCccccc
Confidence 888877764 77888999999999999998 89999999776 9999985421000
Q ss_pred -CCCC----C---ccccCC-cceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEeCCCCCC
Q 003907 407 -GSGN----H---KYDWNS-SHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGG 465 (787)
Q Consensus 407 -~~g~----~---~~~~~~-s~~~l~~l~rG~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~~~gg 465 (787)
..+. . ...+.. ....+..+. + +...|++++|+||+++|++++.||+|+||++...+.
T Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-h~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~ 340 (351)
T 3f3f_A 275 DAQGRSDSNTEEKAELQSNLQVELLSEHD-D-HNGEVWSVSWNLTGTILSSAGDDGKVRLWKATYSNE 340 (351)
T ss_dssp ----------------CCSEEEEEEEEEC-T-TSSCEEEEEECSSSCCEEEEETTSCEEEEEECTTSC
T ss_pred ccccccccccceeeeecccccccEEEEEe-c-ccccEEEEEEcCCCCEEEEecCCCcEEEEecCcCcc
Confidence 0000 0 000000 112333343 3 345799999999999999999999999999987543
No 36
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=99.89 E-value=3.6e-21 Score=218.79 Aligned_cols=317 Identities=18% Similarity=0.176 Sum_probs=208.4
Q ss_pred CCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCceeEeeeeccCcEEEEEEecCCCCCCCCCCccccCc
Q 003907 53 EDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHP 131 (787)
Q Consensus 53 ~~~~~~v~wa~Fd~l~~~~~~~~~vL~lG~~~G-~qVWdv~~~~~~~ells~~dg~V~~v~~lP~P~~~~~~d~F~~srp 131 (787)
..|...|..+.|.. +++.|++|..+| ++|||. .++....+..|.++|..+.+.|+. .
T Consensus 218 ~~~~~~v~~~~~s~-------dg~~l~~~~~d~~i~~w~~--~~~~~~~~~~~~~~v~~v~~~~d~-------------~ 275 (577)
T 2ymu_A 218 TGHSSSVRGVAFSP-------DGQTIASASDDKTVKLWNR--NGQLLQTLTGHSSSVNGVAFRPDG-------------Q 275 (577)
T ss_dssp ECCSSCEEEEEECT-------TSSCEEEEETTSCEEEECT--TSCEEEEECCCSSCEEEEEECTTS-------------S
T ss_pred ecCCCCEEEEEECC-------CCCEEEEEeCCCEEEEEeC--CCCEEEEEecCCCCEEEEEEcCCC-------------C
Confidence 34566677777753 356777777776 999996 356777888899999999998742 2
Q ss_pred EEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCC-CcEEEEEecC--CeEEEE
Q 003907 132 FLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFR-SSVCMVRCSP--RIVAVG 208 (787)
Q Consensus 132 LLavV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~v~tL~f~-s~V~sV~~s~--~~LaV~ 208 (787)
+|++.+. +++|++||. +++.+..+..+ ..|+++++++ +.|+++
T Consensus 276 ~l~~~~~---------------------------------d~~i~~w~~-~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~ 321 (577)
T 2ymu_A 276 TIASASD---------------------------------DKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDGQTIASA 321 (577)
T ss_dssp EEEEEET---------------------------------TSCEEEEET-TSCEEEEECCCSSCEEEEEECTTSSEEEEE
T ss_pred EEEEEeC---------------------------------CCEEEEEeC-CCcEEEEEecCCCCeEEEEECCCCCEEEEE
Confidence 5654321 257999996 56777888654 6899999987 577776
Q ss_pred e-CCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEcc--ceEEEecCCc--eecC-cceeccccCC---C
Q 003907 209 L-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP--RWLAYASNTL--LLSN-SGRLSPQNLT---P 279 (787)
Q Consensus 209 ~-~~~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~~~~~lAlsp--r~LAyas~~~--~l~~-~g~~s~q~lt---~ 279 (787)
. ++.|++||+.+. .+..+..+..+ ...++++| ++||.++.+. .+++ .+.. ...+. .
T Consensus 322 ~~d~~i~~w~~~~~-~~~~~~~~~~~-------------v~~~~~s~~g~~l~~~~~dg~v~~~~~~~~~-~~~~~~~~~ 386 (577)
T 2ymu_A 322 SDDKTVKLWNRNGQ-HLQTLTGHSSS-------------VWGVAFSPDGQTIASASDDKTVKLWNRNGQL-LQTLTGHSS 386 (577)
T ss_dssp ETTSCEEEEETTSC-EEEEECCCSSC-------------EEEEEECTTSSEEEEEETTSEEEEEETTCCE-EEEEECCSS
T ss_pred eCCCeEEEEeCCCC-eeEEEeCCCCC-------------EEEEEECCCCCEEEEEeCCCEEEEEcCCCCE-EEEecCCCC
Confidence 5 567999997644 45556554442 34678888 7888886653 2222 1111 11111 1
Q ss_pred CCcCCCcCCCCCceeEeeehhhhhhhhc---ccceeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEEC
Q 003907 280 SGVSPSTSPGGSSLVARYAMEHSKQFAA---GLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDF 356 (787)
Q Consensus 280 ~~~s~s~sp~~g~lva~~a~d~sk~la~---G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl 356 (787)
......++|++..++. ...|....+.. ...+++..+ .+....+.++++.+ .++.+..||.|++||+
T Consensus 387 ~v~~~~~s~dg~~l~~-~~~d~~v~~~~~~~~~~~~~~~~------~~~v~~~~~s~d~~----~l~~~~~d~~v~~w~~ 455 (577)
T 2ymu_A 387 SVRGVAFSPDGQTIAS-ASDDKTVKLWNRNGQLLQTLTGH------SSSVWGVAFSPDDQ----TIASASDDKTVKLWNR 455 (577)
T ss_dssp CEEEEEECTTSSCEEE-EETTSEEEEECTTCCEEEEEECC------SSCEEEEEECTTSS----EEEEEETTSEEEEEET
T ss_pred CeEEEEECCCCCEEEE-EeCCCEEEEEeCCCCEEEEecCC------CCCeEEEEECCCCC----EEEEEcCCCEEEEEEC
Confidence 2223345566544432 23332211110 111222211 11122344444443 3456788999999996
Q ss_pred CCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEE
Q 003907 357 VTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQD 436 (787)
Q Consensus 357 ~s~~~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~s 436 (787)
+++.+..+.+|..+|.+++|+|+|++||+++.|+ .|+|||.. | ..+..+. | +...|.+
T Consensus 456 -~~~~~~~~~~~~~~v~~~~~spd~~~las~~~d~-~i~iw~~~--------~----------~~~~~~~-~-h~~~v~~ 513 (577)
T 2ymu_A 456 -NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDK-TVKLWNRN--------G----------QLLQTLT-G-HSSSVRG 513 (577)
T ss_dssp -TSCEEEEEECCSSCEEEEEECTTSCEEEEEETTS-EEEEEETT--------S----------CEEEEEE-C-CSSCEEE
T ss_pred -CCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCC-EEEEEcCC--------C----------CEEEEEe-C-CCCCEEE
Confidence 5678889999999999999999999999999966 59999962 3 3555664 4 3457999
Q ss_pred EEEccCCCEEEEEeCCCeEEEEeCCCCCCccccccccC
Q 003907 437 ICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQTLSS 474 (787)
Q Consensus 437 laFSpDg~~LAs~S~dgTVhIwdl~~~gg~~~~~~H~~ 474 (787)
|+|||||++||+++.|++|+|||+. ......+.+|..
T Consensus 514 l~~s~dg~~l~s~~~dg~v~lwd~~-~~~~~~~~~h~~ 550 (577)
T 2ymu_A 514 VAFSPDGQTIASASDDKTVKLWNRN-GQLLQTLTGHSS 550 (577)
T ss_dssp EEECTTSSCEEEEETTSEEEEECTT-SCEEEEEECCSS
T ss_pred EEEcCCCCEEEEEECcCEEEEEeCC-CCEEEEEcCCCC
Confidence 9999999999999999999999963 223345666753
No 37
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=99.89 E-value=2.9e-21 Score=208.34 Aligned_cols=289 Identities=11% Similarity=0.036 Sum_probs=198.0
Q ss_pred CCCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCC-----ceeEeeeeccCcEEEEEEecCCCCCCCCCC
Q 003907 52 SEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDAS-----NFNELVSKRDGPVSFLQMQPFPVKDDGCEG 125 (787)
Q Consensus 52 ~~~~~~~v~wa~Fd~l~~~~~~~~~vL~lG~~~G-~qVWdv~~~~-----~~~ells~~dg~V~~v~~lP~P~~~~~~d~ 125 (787)
..+|++.|..+.|+. +.|++|..+| ++|||++... .+...+..|.++|.++.+.|+..
T Consensus 12 ~~~h~~~i~~~~~~~---------~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~------- 75 (397)
T 1sq9_A 12 GKAHDADIFSVSACN---------SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIE------- 75 (397)
T ss_dssp SSCSSSCEEEEEECS---------SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEE-------
T ss_pred hhhhhcCeEEEEecC---------CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccc-------
Confidence 567999999999962 4777777776 9999996533 14566678889999999997410
Q ss_pred ccccC---cEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeE-----EEEEeCC-----
Q 003907 126 FRKLH---PFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCY-----EHVLRFR----- 192 (787)
Q Consensus 126 F~~sr---pLLavV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~-----v~tL~f~----- 192 (787)
... .+|++.+. +++|++||+.+++. +..+..+
T Consensus 76 --~~g~~~~~l~s~~~---------------------------------dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~ 120 (397)
T 1sq9_A 76 --RDAFELCLVATTSF---------------------------------SGDLLFYRITREDETKKVIFEKLDLLDSDMK 120 (397)
T ss_dssp --TTTEEEEEEEEEET---------------------------------TSCEEEEEEEECTTTCCEEEEEECCSCTTGG
T ss_pred --cCCccccEEEEEcC---------------------------------CCCEEEEEccCCcccccccceeecccccccC
Confidence 001 25654321 25899999999887 8888765
Q ss_pred -CcEEEEEec----C--Ce-EEEEe-CCeEEEEECCC------CceeE-----EEEe-------cCCcccCCCCcccccc
Q 003907 193 -SSVCMVRCS----P--RI-VAVGL-ATQIYCFDALT------LENKF-----SVLT-------YPVPQLAGQGAVGINV 245 (787)
Q Consensus 193 -s~V~sV~~s----~--~~-LaV~~-~~~I~iwD~~T------~e~l~-----tl~t-------~p~p~~~~~~~~~~~~ 245 (787)
..|.+++++ + +. |+++. ++.|++||+.+ ++.+. ++.. +..
T Consensus 121 ~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------- 187 (397)
T 1sq9_A 121 KHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQ------------- 187 (397)
T ss_dssp GSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCC-------------
T ss_pred CCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCC-------------
Confidence 799999999 5 56 77664 56899999998 66665 6643 221
Q ss_pred ccceeEEccc-eEEEecCCceecCcceeccccCCCCCcCCCcCCCCCceeEeeehhhhhhhhcccceeecc---cccccC
Q 003907 246 GYGPMAVGPR-WLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSK---YCQELL 321 (787)
Q Consensus 246 ~~~~lAlspr-~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~sp~~g~lva~~a~d~sk~la~G~~ktls~---~~~~l~ 321 (787)
....++++|. +|++++.+..+ ..|+..+. ..+ ..+.. +. .
T Consensus 188 ~i~~~~~~~~~~l~~~~~dg~i-----~i~d~~~~------------~~~----------------~~~~~~~~h~---~ 231 (397)
T 1sq9_A 188 FATSVDISERGLIATGFNNGTV-----QISELSTL------------RPL----------------YNFESQHSMI---N 231 (397)
T ss_dssp CCCEEEECTTSEEEEECTTSEE-----EEEETTTT------------EEE----------------EEEECCC------C
T ss_pred CceEEEECCCceEEEEeCCCcE-----EEEECCCC------------cee----------------EEEecccccc---c
Confidence 1346788773 66776654211 12222111 110 01110 00 0
Q ss_pred CCCCCCCcccCCccccccccccccCCC---ceEEEEECCCCcEEEEecc-------------CCCCeEEEEECCCCCEEE
Q 003907 322 PDGSSSPVSPNSVWKVGRHAGADMDNA---GIVVVKDFVTRAIISQFKA-------------HTSPISALCFDPSGTLLV 385 (787)
Q Consensus 322 p~~s~~~~s~s~~~~~~~~~~~s~~~d---G~V~IwDl~s~~~v~~~~a-------------H~~pIsaLaFSpdG~lLA 385 (787)
.......+.++++.+ .++.+..+ |.|+|||+.+++.+..+.+ |..+|.+++|+|+|++|+
T Consensus 232 ~~~~i~~i~~~~~~~----~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 307 (397)
T 1sq9_A 232 NSNSIRSVKFSPQGS----LLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLC 307 (397)
T ss_dssp CCCCEEEEEECSSTT----EEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEE
T ss_pred cCCccceEEECCCCC----EEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEE
Confidence 011112223333322 24456677 9999999999999999999 999999999999999999
Q ss_pred EEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEec-----cc--------------ccccEEEEEEccCC---
Q 003907 386 TASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHR-----GI--------------TSATIQDICFSHYS--- 443 (787)
Q Consensus 386 TaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~r-----G~--------------~~a~I~slaFSpDg--- 443 (787)
+++.|| .|+|||+.. + ..+..+.. ++ +...|.+++|+|||
T Consensus 308 ~~~~dg-~i~iwd~~~-------~----------~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~ 369 (397)
T 1sq9_A 308 SAGWDG-KLRFWDVKT-------K----------ERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRS 369 (397)
T ss_dssp EEETTS-EEEEEETTT-------T----------EEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSB
T ss_pred EEeCCC-eEEEEEcCC-------C----------ceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccc
Confidence 999966 599999954 2 45556541 21 14579999999999
Q ss_pred -------CEEEEEeCCCeEEEEeCCC
Q 003907 444 -------QWIAIVSSKGTCHVFVLSP 462 (787)
Q Consensus 444 -------~~LAs~S~dgTVhIwdl~~ 462 (787)
++|++++.||+|+||++..
T Consensus 370 ~~~~~~~~~l~s~~~dg~i~iw~~~~ 395 (397)
T 1sq9_A 370 GMGADLNESLCCVCLDRSIRWFREAG 395 (397)
T ss_dssp STTCTTSCEEEEEETTTEEEEEEEEC
T ss_pred cccccccceEEEecCCCcEEEEEcCC
Confidence 7999999999999999864
No 38
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=99.89 E-value=1.7e-20 Score=194.37 Aligned_cols=275 Identities=13% Similarity=0.075 Sum_probs=190.3
Q ss_pred CCCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCceeEeeeeccCcEEEEEEecCCCCCCCCCCccccC
Q 003907 52 SEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLH 130 (787)
Q Consensus 52 ~~~~~~~v~wa~Fd~l~~~~~~~~~vL~lG~~~G-~qVWdv~~~~~~~ells~~dg~V~~v~~lP~P~~~~~~d~F~~sr 130 (787)
..+|++.|..+.| . + ++.|++|..+| ++|||++ .+.....+..|.++|..+.+.|+.
T Consensus 14 l~~h~~~v~~~~~-~----~---~~~l~s~~~dg~v~vw~~~-~~~~~~~~~~~~~~v~~~~~~~~~------------- 71 (313)
T 3odt_A 14 LKGHDQDVRDVVA-V----D---DSKVASVSRDGTVRLWSKD-DQWLGTVVYTGQGFLNSVCYDSEK------------- 71 (313)
T ss_dssp ECCCSSCEEEEEE-E----E---TTEEEEEETTSEEEEEEES-SSEEEEEEEECSSCEEEEEEETTT-------------
T ss_pred hhCCCCCcEEEEe-c----C---CCEEEEEEcCCcEEEEECC-CCEEEEEeecCCccEEEEEECCCC-------------
Confidence 4678999999998 3 1 45688888877 9999995 466777888899999999999742
Q ss_pred cEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCC---eEEEEEeC-CCcEEEEEecCCeEE
Q 003907 131 PFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSH---CYEHVLRF-RSSVCMVRCSPRIVA 206 (787)
Q Consensus 131 pLLavV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg---~~v~tL~f-~s~V~sV~~s~~~La 206 (787)
.+|++.+. ++.|++|++... +.+..+.. ...|.++.++.+.|+
T Consensus 72 ~~l~~~~~---------------------------------dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~ 118 (313)
T 3odt_A 72 ELLLFGGK---------------------------------DTMINGVPLFATSGEDPLYTLIGHQGNVCSLSFQDGVVI 118 (313)
T ss_dssp TEEEEEET---------------------------------TSCEEEEETTCCTTSCC-CEECCCSSCEEEEEEETTEEE
T ss_pred CEEEEecC---------------------------------CCeEEEEEeeecCCCCcccchhhcccCEEEEEecCCEEE
Confidence 26655332 257999998654 56667764 468999999998888
Q ss_pred EEe-CCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEcc---ceEEEecCCceecCcceeccccCCCCCc
Q 003907 207 VGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP---RWLAYASNTLLLSNSGRLSPQNLTPSGV 282 (787)
Q Consensus 207 V~~-~~~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~~~~~lAlsp---r~LAyas~~~~l~~~g~~s~q~lt~~~~ 282 (787)
++. ++.|++|| +.+....+..+..+ ...+++.| ++|+.++.+..+ ..|+...
T Consensus 119 ~~~~d~~i~~~d--~~~~~~~~~~~~~~-------------v~~~~~~~~~~~~l~~~~~d~~i-----~i~d~~~---- 174 (313)
T 3odt_A 119 SGSWDKTAKVWK--EGSLVYNLQAHNAS-------------VWDAKVVSFSENKFLTASADKTI-----KLWQNDK---- 174 (313)
T ss_dssp EEETTSEEEEEE--TTEEEEEEECCSSC-------------EEEEEEEETTTTEEEEEETTSCE-----EEEETTE----
T ss_pred EEeCCCCEEEEc--CCcEEEecccCCCc-------------eeEEEEccCCCCEEEEEECCCCE-----EEEecCc----
Confidence 866 56799999 66667777665543 23345433 677776654211 1122100
Q ss_pred CCCcCCCCCceeEeeehhhhhhhhcccceeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECCCCcEE
Q 003907 283 SPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAII 362 (787)
Q Consensus 283 s~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~v 362 (787)
.. +.+... .......+.++++.. ++.+..+|.|++||+.+++.+
T Consensus 175 ----------~~----------------~~~~~~-----~~~~i~~~~~~~~~~-----~~~~~~dg~i~i~d~~~~~~~ 218 (313)
T 3odt_A 175 ----------VI----------------KTFSGI-----HNDVVRHLAVVDDGH-----FISCSNDGLIKLVDMHTGDVL 218 (313)
T ss_dssp ----------EE----------------EEECSS-----CSSCEEEEEEEETTE-----EEEEETTSEEEEEETTTCCEE
T ss_pred ----------eE----------------EEEecc-----CcccEEEEEEcCCCe-----EEEccCCCeEEEEECCchhhh
Confidence 00 000000 000011111222111 346778999999999999999
Q ss_pred EEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccC
Q 003907 363 SQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHY 442 (787)
Q Consensus 363 ~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpD 442 (787)
..+.+|..+|.+++|+|+| .|++++.|| .|+|||+.. + ..+..+.. +...|.+++|+||
T Consensus 219 ~~~~~~~~~i~~~~~~~~~-~l~~~~~dg-~v~iwd~~~-------~----------~~~~~~~~--~~~~i~~~~~~~~ 277 (313)
T 3odt_A 219 RTYEGHESFVYCIKLLPNG-DIVSCGEDR-TVRIWSKEN-------G----------SLKQVITL--PAISIWSVDCMSN 277 (313)
T ss_dssp EEEECCSSCEEEEEECTTS-CEEEEETTS-EEEEECTTT-------C----------CEEEEEEC--SSSCEEEEEECTT
T ss_pred hhhhcCCceEEEEEEecCC-CEEEEecCC-EEEEEECCC-------C----------ceeEEEec--cCceEEEEEEccC
Confidence 9999999999999999999 588899866 499999864 2 35555543 2347999999999
Q ss_pred CCEEEEEeCCCeEEEEeCCCC
Q 003907 443 SQWIAIVSSKGTCHVFVLSPF 463 (787)
Q Consensus 443 g~~LAs~S~dgTVhIwdl~~~ 463 (787)
++ |++++.||+|+||+++..
T Consensus 278 ~~-~~~~~~dg~i~iw~~~~~ 297 (313)
T 3odt_A 278 GD-IIVGSSDNLVRIFSQEKS 297 (313)
T ss_dssp SC-EEEEETTSCEEEEESCGG
T ss_pred CC-EEEEeCCCcEEEEeCCCC
Confidence 99 567899999999999764
No 39
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=99.89 E-value=1.1e-20 Score=203.64 Aligned_cols=250 Identities=14% Similarity=0.118 Sum_probs=171.9
Q ss_pred CCCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCC-ceeEeeeeccCcEEEEEEecCCCCCCCCCCcccc
Q 003907 52 SEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDAS-NFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKL 129 (787)
Q Consensus 52 ~~~~~~~v~wa~Fd~l~~~~~~~~~vL~lG~~~G-~qVWdv~~~~-~~~ells~~dg~V~~v~~lP~P~~~~~~d~F~~s 129 (787)
.++|++.|..+.|.. +++.|++|..+| ++|||++... ++...+..|.++|..+++.|+.
T Consensus 57 ~~~h~~~v~~~~~sp-------~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~------------ 117 (345)
T 3fm0_A 57 SEGHQRTVRKVAWSP-------CGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSG------------ 117 (345)
T ss_dssp CSSCSSCEEEEEECT-------TSSEEEEEETTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTS------------
T ss_pred ccccCCcEEEEEECC-------CCCEEEEEECCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCC------------
Confidence 357889999999963 366888888766 9999996432 3455678899999999999742
Q ss_pred CcEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCe---EEEEEeC-CCcEEEEEecC--C
Q 003907 130 HPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHC---YEHVLRF-RSSVCMVRCSP--R 203 (787)
Q Consensus 130 rpLLavV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~---~v~tL~f-~s~V~sV~~s~--~ 203 (787)
.+|+..+. +++|++||+++++ ++..+.. ...|..+++++ +
T Consensus 118 -~~l~s~s~---------------------------------D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~ 163 (345)
T 3fm0_A 118 -NLLATCSR---------------------------------DKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQE 163 (345)
T ss_dssp -SEEEEEET---------------------------------TSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSS
T ss_pred -CEEEEEEC---------------------------------CCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCC
Confidence 26665332 2589999998764 4556654 45899999987 5
Q ss_pred eEEEEe-CCeEEEEECCCCce--eEEEEecCCcccCCCCccccccccceeEEcc--ceEEEecCCceecCcceeccccCC
Q 003907 204 IVAVGL-ATQIYCFDALTLEN--KFSVLTYPVPQLAGQGAVGINVGYGPMAVGP--RWLAYASNTLLLSNSGRLSPQNLT 278 (787)
Q Consensus 204 ~LaV~~-~~~I~iwD~~T~e~--l~tl~t~p~p~~~~~~~~~~~~~~~~lAlsp--r~LAyas~~~~l~~~g~~s~q~lt 278 (787)
+|+++. ++.|++||+.+.+. ..++..|..+ ...++++| ++||.++.
T Consensus 164 ~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~-------------v~~l~~sp~g~~l~s~s~---------------- 214 (345)
T 3fm0_A 164 LLASASYDDTVKLYREEEDDWVCCATLEGHEST-------------VWSLAFDPSGQRLASCSD---------------- 214 (345)
T ss_dssp CEEEEETTSCEEEEEEETTEEEEEEEECCCSSC-------------EEEEEECTTSSEEEEEET----------------
T ss_pred EEEEEeCCCcEEEEEecCCCEEEEEEecCCCCc-------------eEEEEECCCCCEEEEEeC----------------
Confidence 777765 56899999887653 3455555442 34566666 55655543
Q ss_pred CCCcCCCcCCCCCceeEeeehhhhhhhhcccceeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECC-
Q 003907 279 PSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFV- 357 (787)
Q Consensus 279 ~~~~s~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~- 357 (787)
||+|+|||..
T Consensus 215 ---------------------------------------------------------------------D~~v~iW~~~~ 225 (345)
T 3fm0_A 215 ---------------------------------------------------------------------DRTVRIWRQYL 225 (345)
T ss_dssp ---------------------------------------------------------------------TSCEEEEEEEC
T ss_pred ---------------------------------------------------------------------CCeEEEecccc
Confidence 3333344321
Q ss_pred --------------CCcEEEEecc-CCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEE
Q 003907 358 --------------TRAIISQFKA-HTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHL 422 (787)
Q Consensus 358 --------------s~~~v~~~~a-H~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l 422 (787)
..+++..+.+ |...|.+++|+|++.+||+++.|+. |+||++.+... .. .......
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~-i~vw~~~~~~~---~~------~~~~~~~ 295 (345)
T 3fm0_A 226 PGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDA-IRVFQEDPNSD---PQ------QPTFSLT 295 (345)
T ss_dssp TTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSC-EEEEEECTTSC---TT------SCCEEEE
T ss_pred CCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCe-EEEEEeCCCCC---cc------eeeEEEE
Confidence 1124455555 8999999999999999999999775 99999854210 00 0011112
Q ss_pred EEEecccccccEEEEEEccCC-CEEEEEeCCCeEEEEeCCCC
Q 003907 423 YKLHRGITSATIQDICFSHYS-QWIAIVSSKGTCHVFVLSPF 463 (787)
Q Consensus 423 ~~l~rG~~~a~I~slaFSpDg-~~LAs~S~dgTVhIwdl~~~ 463 (787)
..+..+ +...|.+|+|+|++ .+||++|.||+|+||++...
T Consensus 296 ~~~~~~-h~~~V~~v~~~p~~~~~laS~s~Dg~v~~W~~~~~ 336 (345)
T 3fm0_A 296 AHLHQA-HSQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQRP 336 (345)
T ss_dssp EEETTS-SSSCEEEEEECSSSTTEEEEEETTSCEEEEEECC-
T ss_pred eeeccc-ccCcEeEeEEeCCCceEEEEcCCCCcEEEEEecCC
Confidence 222334 34579999999998 59999999999999999764
No 40
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=99.89 E-value=3e-20 Score=195.24 Aligned_cols=264 Identities=12% Similarity=0.111 Sum_probs=175.4
Q ss_pred CCCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCc----eeEeeeeccCcEEEEEEecCCCCCCCCCCc
Q 003907 52 SEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASN----FNELVSKRDGPVSFLQMQPFPVKDDGCEGF 126 (787)
Q Consensus 52 ~~~~~~~v~wa~Fd~l~~~~~~~~~vL~lG~~~G-~qVWdv~~~~~----~~ells~~dg~V~~v~~lP~P~~~~~~d~F 126 (787)
..+|++.|..+.|.. ..+++|++|..+| ++|||+..... ....+..|.++|.++.+.|+.
T Consensus 34 L~GH~~~V~~v~~sp------~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg--------- 98 (340)
T 4aow_A 34 LKGHNGWVTQIATTP------QFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDG--------- 98 (340)
T ss_dssp ECCCSSCEEEEEECT------TCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTS---------
T ss_pred ECCccCCEEEEEEeC------CCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCC---------
Confidence 568999999999962 1256888888776 99999965322 344567788999999998742
Q ss_pred cccCcEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCC-CcEEEEEecC--C
Q 003907 127 RKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFR-SSVCMVRCSP--R 203 (787)
Q Consensus 127 ~~srpLLavV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~v~tL~f~-s~V~sV~~s~--~ 203 (787)
.+|+..+. ++.|++|+...+......... ..+..+.+++ +
T Consensus 99 ----~~l~s~~~---------------------------------d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (340)
T 4aow_A 99 ----QFALSGSW---------------------------------DGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNR 141 (340)
T ss_dssp ----SEEEEEET---------------------------------TSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSS
T ss_pred ----CEEEEEcc---------------------------------cccceEEeecccceeeeecCCCCceeEEEEeecCc
Confidence 26654321 258999999999988887755 4666666665 5
Q ss_pred eEEEEe-CCeEEEEECCCCceeEEEE-ecCCcccCCCCccccccccceeEEccceEEEecCCceecCcceeccccCCCCC
Q 003907 204 IVAVGL-ATQIYCFDALTLENKFSVL-TYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSG 281 (787)
Q Consensus 204 ~LaV~~-~~~I~iwD~~T~e~l~tl~-t~p~p~~~~~~~~~~~~~~~~lAlspr~LAyas~~~~l~~~g~~s~q~lt~~~ 281 (787)
.|+++. ++.+++||+.......... .+... ... +++.....
T Consensus 142 ~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~-------------v~~-------~~~~~~~~----------------- 184 (340)
T 4aow_A 142 QIVSGSRDKTIKLWNTLGVCKYTVQDESHSEW-------------VSC-------VRFSPNSS----------------- 184 (340)
T ss_dssp CEEEEETTSCEEEECTTSCEEEEECSSSCSSC-------------EEE-------EEECSCSS-----------------
T ss_pred cceeecCCCeEEEEEeCCCceEEEEeccccCc-------------ccc-------eEEccCCC-----------------
Confidence 666654 5679999987654321111 11110 111 12211100
Q ss_pred cCCCcCCCCCceeEeeehhhhhhhhcccceeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECCCCcE
Q 003907 282 VSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAI 361 (787)
Q Consensus 282 ~s~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~ 361 (787)
.. ..+++..|+.|++||+.+++.
T Consensus 185 ---------~~------------------------------------------------~~~s~~~d~~i~i~d~~~~~~ 207 (340)
T 4aow_A 185 ---------NP------------------------------------------------IIVSCGWDKLVKVWNLANCKL 207 (340)
T ss_dssp ---------SC------------------------------------------------EEEEEETTSCEEEEETTTTEE
T ss_pred ---------Cc------------------------------------------------EEEEEcCCCEEEEEECCCCce
Confidence 00 012345689999999999999
Q ss_pred EEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCccc---CC-----------CCC---Cccc-----cCC-c
Q 003907 362 ISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMR---SG-----------SGN---HKYD-----WNS-S 418 (787)
Q Consensus 362 v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~---~~-----------~g~---~~~~-----~~~-s 418 (787)
+..+.+|..+|.+|+|+|+|++||+++.||+ |+|||+...... .. .+. ...+ |+. .
T Consensus 208 ~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~-i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~i~iwd~~~ 286 (340)
T 4aow_A 208 KTNHIGHTGYLNTVTVSPDGSLCASGGKDGQ-AMLWDLNEGKHLYTLDGGDIINALCFSPNRYWLCAATGPSIKIWDLEG 286 (340)
T ss_dssp EEEECCCSSCEEEEEECTTSSEEEEEETTCE-EEEEETTTTEEEEEEECSSCEEEEEECSSSSEEEEEETTEEEEEETTT
T ss_pred eeEecCCCCcEEEEEECCCCCEEEEEeCCCe-EEEEEeccCceeeeecCCceEEeeecCCCCceeeccCCCEEEEEECCC
Confidence 9999999999999999999999999999765 999998643100 00 000 0000 000 0
Q ss_pred ceEEEEEec-------ccccccEEEEEEccCCCEEEEEeCCCeEEEEeCCC
Q 003907 419 HVHLYKLHR-------GITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSP 462 (787)
Q Consensus 419 ~~~l~~l~r-------G~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~~ 462 (787)
...+.++.. ..+...|.+|+|+|||++|++++.||+|+|||+.+
T Consensus 287 ~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~t 337 (340)
T 4aow_A 287 KIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTI 337 (340)
T ss_dssp TEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEETTSCEEEEEEEC
T ss_pred CeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCC
Confidence 011122211 01234699999999999999999999999999975
No 41
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=99.89 E-value=6.5e-21 Score=204.18 Aligned_cols=244 Identities=11% Similarity=0.093 Sum_probs=162.1
Q ss_pred CCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCC------CceeEeeeeccCcEEEEEEecCCCCCCCCCCcc
Q 003907 55 LKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDA------SNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFR 127 (787)
Q Consensus 55 ~~~~v~wa~Fd~l~~~~~~~~~vL~lG~~~G-~qVWdv~~~------~~~~ells~~dg~V~~v~~lP~P~~~~~~d~F~ 127 (787)
|++.|..+.|.. ++++|++|..+| ++|||++.. .++...+..|.++|..+++.|+.
T Consensus 57 h~~~v~~v~~sp-------~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g---------- 119 (330)
T 2hes_X 57 HKKAIRSVAWRP-------HTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDG---------- 119 (330)
T ss_dssp CCSCEEEEEECT-------TSSEEEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTS----------
T ss_pred ccCCEEEEEECC-------CCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCC----------
Confidence 888899999963 356888888776 999998532 23455677899999999999752
Q ss_pred ccCcEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCC----CeEEEEEeCC-CcEEEEEecC
Q 003907 128 KLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQS----HCYEHVLRFR-SSVCMVRCSP 202 (787)
Q Consensus 128 ~srpLLavV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlkt----g~~v~tL~f~-s~V~sV~~s~ 202 (787)
.+||.++. +++|++||++. .+++.+++.+ ..|.+|++++
T Consensus 120 ---~~las~s~---------------------------------D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p 163 (330)
T 2hes_X 120 ---YYLATCSR---------------------------------DKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHP 163 (330)
T ss_dssp ---CEEEEEET---------------------------------TSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECS
T ss_pred ---CEEEEEeC---------------------------------CCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECC
Confidence 26665332 25899999943 3567777654 6899999987
Q ss_pred --CeEEEEe-CCeEEEEECCCC--ceeEEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCcceeccccC
Q 003907 203 --RIVAVGL-ATQIYCFDALTL--ENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNL 277 (787)
Q Consensus 203 --~~LaV~~-~~~I~iwD~~T~--e~l~tl~t~p~p~~~~~~~~~~~~~~~~lAlspr~LAyas~~~~l~~~g~~s~q~l 277 (787)
++|+++. ++.|++||+.+. +++.++.+|..+ ...++++| +.
T Consensus 164 ~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~-------------v~~~~~~~-------~~-------------- 209 (330)
T 2hes_X 164 SEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGT-------------VWSSDFDK-------TE-------------- 209 (330)
T ss_dssp SSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSC-------------EEEEEECC-------SS--------------
T ss_pred CCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCc-------------EEEEEecC-------CC--------------
Confidence 5777765 668999998765 455555555432 11223221 10
Q ss_pred CCCCcCCCcCCCCCceeEeeehhhhhhhhcccceeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECC
Q 003907 278 TPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFV 357 (787)
Q Consensus 278 t~~~~s~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~ 357 (787)
++. .+++++.||+|+|||+.
T Consensus 210 ------------~~~------------------------------------------------~l~s~s~D~~v~iw~~~ 229 (330)
T 2hes_X 210 ------------GVF------------------------------------------------RLCSGSDDSTVRVWKYM 229 (330)
T ss_dssp ------------SSC------------------------------------------------EEEEEETTSCEEEEEEE
T ss_pred ------------Cee------------------------------------------------EEEEEeCCCeEEEEEec
Confidence 000 01234578999999986
Q ss_pred CC--------cEEEEecc-CCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecc
Q 003907 358 TR--------AIISQFKA-HTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRG 428 (787)
Q Consensus 358 s~--------~~v~~~~a-H~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG 428 (787)
++ .....+.. |..+|.+++|++++ +||+++.||+ |+|||+.. +. ...+.....+
T Consensus 230 ~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg~-v~iw~~~~-------~~--------~~~~~~~~~~ 292 (330)
T 2hes_X 230 GDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG-LIASVGADGV-LAVYEEVD-------GE--------WKVFAKRALC 292 (330)
T ss_dssp EECTTSCEEEEEEEECCSCCSSCEEEEEECTTS-CEEEEETTSC-EEEEEEET-------TE--------EEEEEEESCT
T ss_pred CCCccccceeEEeeecccccccceEEEEEcCCC-EEEEEeCCCE-EEEEEcCC-------Cc--------eEEEeccccc
Confidence 54 34556665 99999999999766 8999999776 99999743 20 0122233234
Q ss_pred cccccEEEEEEcc--CCCEEEEEeCCCeEEEEeCCC
Q 003907 429 ITSATIQDICFSH--YSQWIAIVSSKGTCHVFVLSP 462 (787)
Q Consensus 429 ~~~a~I~slaFSp--Dg~~LAs~S~dgTVhIwdl~~ 462 (787)
+....|.+++|+| |+++||+++.||+|+||+++.
T Consensus 293 h~~~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~~~ 328 (330)
T 2hes_X 293 HGVYEINVVKWLELNGKTILATGGDDGIVNFWSLEK 328 (330)
T ss_dssp TTTSCEEEEEEC-----CCEEEEETTSEEEEEEC--
T ss_pred cccceEEEEEEecCCCceEEEEecCCCcEEEEEecc
Confidence 3323799999999 799999999999999999864
No 42
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=99.89 E-value=2.2e-20 Score=200.57 Aligned_cols=262 Identities=17% Similarity=0.175 Sum_probs=179.8
Q ss_pred CCCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCceeEeee-------------eccCcEEEEEEecCC
Q 003907 52 SEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNELVS-------------KRDGPVSFLQMQPFP 117 (787)
Q Consensus 52 ~~~~~~~v~wa~Fd~l~~~~~~~~~vL~lG~~~G-~qVWdv~~~~~~~ells-------------~~dg~V~~v~~lP~P 117 (787)
...|++.|..+.|.. .+++.|++|..+| ++|||++... ....+. .|.++|..+++.|+.
T Consensus 39 ~~~h~~~v~~~~~s~------~~~~~l~~~~~dg~i~iw~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 111 (408)
T 4a11_B 39 ERIHGGGINTLDIEP------VEGRYMLSGGSDGVIVLYDLENSS-RQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHD 111 (408)
T ss_dssp CCCCSSCEEEEEECT------TTCCEEEEEETTSCEEEEECCCCS-SSSCEEECEEEEECTTCTTCCSSCEEEEEECTTC
T ss_pred eeccCCcEEEEEEec------CCCCEEEEEcCCCeEEEEECCCCc-ccceEeccccccccccccccCCCcEEEEEEccCC
Confidence 456899999999962 1356888888776 9999997543 333332 388899999998731
Q ss_pred CCCCCCCCccccCcEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCCcEEE
Q 003907 118 VKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRSSVCM 197 (787)
Q Consensus 118 ~~~~~~d~F~~srpLLavV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~v~tL~f~s~V~s 197 (787)
..+|++++. +++|++||+++++.+..+.+...+..
T Consensus 112 ------------~~~l~s~~~---------------------------------d~~i~iwd~~~~~~~~~~~~~~~~~~ 146 (408)
T 4a11_B 112 ------------TGMFTSSSF---------------------------------DKTLKVWDTNTLQTADVFNFEETVYS 146 (408)
T ss_dssp ------------TTCEEEEET---------------------------------TSEEEEEETTTTEEEEEEECSSCEEE
T ss_pred ------------CcEEEEEeC---------------------------------CCeEEEeeCCCCccceeccCCCceee
Confidence 125554221 26899999999999999999999999
Q ss_pred EEecC-----CeEEEEe-CCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEcc--c-eEEEecCCceecC
Q 003907 198 VRCSP-----RIVAVGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP--R-WLAYASNTLLLSN 268 (787)
Q Consensus 198 V~~s~-----~~LaV~~-~~~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~~~~~lAlsp--r-~LAyas~~~~l~~ 268 (787)
+.+++ .+|+++. ++.|++||+.+++.+.++..|..+ ...++++| + .|+
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~-------------v~~~~~~~~~~~ll~---------- 203 (408)
T 4a11_B 147 HHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQE-------------ILAVSWSPRYDYILA---------- 203 (408)
T ss_dssp EEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECCCCSC-------------EEEEEECSSCTTEEE----------
T ss_pred eEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecCCCCc-------------EEEEEECCCCCcEEE----------
Confidence 99976 2677655 568999999999888877765442 22344433 1 121
Q ss_pred cceeccccCCCCCcCCCcCCCCCceeEeeehhhhhhhhcccceeecccccccCCCCCCCCcccCCccccccccccccCCC
Q 003907 269 SGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNA 348 (787)
Q Consensus 269 ~g~~s~q~lt~~~~s~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~d 348 (787)
.+..+
T Consensus 204 ---------------------------------------------------------------------------~~~~d 208 (408)
T 4a11_B 204 ---------------------------------------------------------------------------TASAD 208 (408)
T ss_dssp ---------------------------------------------------------------------------EEETT
T ss_pred ---------------------------------------------------------------------------EEcCC
Confidence 23456
Q ss_pred ceEEEEECCCCc-EEEEe---------------ccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccC-CCCC-
Q 003907 349 GIVVVKDFVTRA-IISQF---------------KAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRS-GSGN- 410 (787)
Q Consensus 349 G~V~IwDl~s~~-~v~~~---------------~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~-~~g~- 410 (787)
|.|++||+.++. .+..+ .+|..+|.+++|+|+|++|++++.||. |++||+....... ..+.
T Consensus 209 g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~-i~vwd~~~~~~~~~~~~~~ 287 (408)
T 4a11_B 209 SRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNR-MRLWNSSNGENTLVNYGKV 287 (408)
T ss_dssp SCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSC-EEEEETTTCCBCCCCCCCC
T ss_pred CcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCe-EEEEECCCCccceeccccc
Confidence 778888876654 33333 679999999999999999999999776 9999986421000 0000
Q ss_pred -----C--cc--------------------ccC-CcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEeCCC
Q 003907 411 -----H--KY--------------------DWN-SSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSP 462 (787)
Q Consensus 411 -----~--~~--------------------~~~-~s~~~l~~l~rG~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~~ 462 (787)
. .. .|+ .....+..+. + +...|.+++|+||+++|++++.||+|+||++..
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~-~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~ 365 (408)
T 4a11_B 288 CNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLK-G-HYKTVDCCVFQSNFQELYSGSRDCNILAWVPSL 365 (408)
T ss_dssp CCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEEC-C-CSSCEEEEEEETTTTEEEEEETTSCEEEEEECC
T ss_pred cccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeec-c-CCCeEEEEEEcCCCCEEEEECCCCeEEEEeCCC
Confidence 0 00 000 0112334443 3 345799999999999999999999999999987
Q ss_pred CCCc
Q 003907 463 FGGD 466 (787)
Q Consensus 463 ~gg~ 466 (787)
....
T Consensus 366 ~~~~ 369 (408)
T 4a11_B 366 YEPV 369 (408)
T ss_dssp ----
T ss_pred CCcc
Confidence 6443
No 43
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=99.89 E-value=1.2e-20 Score=202.03 Aligned_cols=247 Identities=12% Similarity=0.118 Sum_probs=168.0
Q ss_pred CCCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCC-ceeEee-ee-ccCcEEEEEEecCCCCCCCCCCcc
Q 003907 52 SEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDAS-NFNELV-SK-RDGPVSFLQMQPFPVKDDGCEGFR 127 (787)
Q Consensus 52 ~~~~~~~v~wa~Fd~l~~~~~~~~~vL~lG~~~G-~qVWdv~~~~-~~~ell-s~-~dg~V~~v~~lP~P~~~~~~d~F~ 127 (787)
..+|++.|..+.|+. .+|++|..+| ++|||+.... .+...+ .. |.++|..|++.|+.
T Consensus 10 ~~~h~~~v~~~~~s~---------~~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~---------- 70 (330)
T 2hes_X 10 LKLYKEKIWSFDFSQ---------GILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHT---------- 70 (330)
T ss_dssp EECCSSCEEEEEEET---------TEEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTS----------
T ss_pred eccCCCceeeeccCC---------CEEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCC----------
Confidence 457889999999973 1788888776 9999996422 333444 33 88999999998742
Q ss_pred ccCcEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECC-------CCeEEEEEeCC-CcEEEEE
Q 003907 128 KLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQ-------SHCYEHVLRFR-SSVCMVR 199 (787)
Q Consensus 128 ~srpLLavV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlk-------tg~~v~tL~f~-s~V~sV~ 199 (787)
.+||+.+. +++|+|||+. +.+.+.+++.+ ..|.+|+
T Consensus 71 ---~~las~s~---------------------------------D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~ 114 (330)
T 2hes_X 71 ---SLLAAGSF---------------------------------DSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVA 114 (330)
T ss_dssp ---SEEEEEET---------------------------------TSCEEEEEC-------CCCEEEEEEC----CEEEEE
T ss_pred ---CEEEEEeC---------------------------------CCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEE
Confidence 36665332 2589999985 34567777654 5899999
Q ss_pred ecC--CeEEEEe-CCeEEEEECCCC----ceeEEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCccee
Q 003907 200 CSP--RIVAVGL-ATQIYCFDALTL----ENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRL 272 (787)
Q Consensus 200 ~s~--~~LaV~~-~~~I~iwD~~T~----e~l~tl~t~p~p~~~~~~~~~~~~~~~~lAlspr~LAyas~~~~l~~~g~~ 272 (787)
|++ ++||++. ++.|++||+.+. +++.++..|..+ ...++++| +.
T Consensus 115 ~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~-------------v~~v~~~p-------~~--------- 165 (330)
T 2hes_X 115 WSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQD-------------VKHVIWHP-------SE--------- 165 (330)
T ss_dssp ECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSC-------------EEEEEECS-------SS---------
T ss_pred ECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCc-------------eEEEEECC-------CC---------
Confidence 987 6777765 568999998432 333444444331 12233322 10
Q ss_pred ccccCCCCCcCCCcCCCCCceeEeeehhhhhhhhcccceeecccccccCCCCCCCCcccCCccccccccccccCCCceEE
Q 003907 273 SPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVV 352 (787)
Q Consensus 273 s~q~lt~~~~s~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~ 352 (787)
. .+++++.||+|+
T Consensus 166 ------------------~-------------------------------------------------~l~s~s~D~~i~ 178 (330)
T 2hes_X 166 ------------------A-------------------------------------------------LLASSSYDDTVR 178 (330)
T ss_dssp ------------------S-------------------------------------------------EEEEEETTSCEE
T ss_pred ------------------C-------------------------------------------------EEEEEcCCCeEE
Confidence 0 112345689999
Q ss_pred EEECCCC--cEEEEeccCCCCeEEEEECCC--CCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecc
Q 003907 353 VKDFVTR--AIISQFKAHTSPISALCFDPS--GTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRG 428 (787)
Q Consensus 353 IwDl~s~--~~v~~~~aH~~pIsaLaFSpd--G~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG 428 (787)
|||+.++ +.+..+.+|..+|.+++|+|+ +.+|+|++.|++ |+|||+.... ..+ .........+ .+
T Consensus 179 iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~-v~iw~~~~~~---~~~------~~~~~~~~~~-~~ 247 (330)
T 2hes_X 179 IWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDST-VRVWKYMGDD---EDD------QQEWVCEAIL-PD 247 (330)
T ss_dssp EEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSC-EEEEEEEEEC---TTS------CEEEEEEEEC-CS
T ss_pred EEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCe-EEEEEecCCC---ccc------cceeEEeeec-cc
Confidence 9998776 678899999999999999999 789999999776 9999985310 000 0000122222 23
Q ss_pred cccccEEEEEEccCCCEEEEEeCCCeEEEEeCC
Q 003907 429 ITSATIQDICFSHYSQWIAIVSSKGTCHVFVLS 461 (787)
Q Consensus 429 ~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~ 461 (787)
.+...|++++|++++ +|++++.||+|+||++.
T Consensus 248 ~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~ 279 (330)
T 2hes_X 248 VHKRQVYNVAWGFNG-LIASVGADGVLAVYEEV 279 (330)
T ss_dssp CCSSCEEEEEECTTS-CEEEEETTSCEEEEEEE
T ss_pred ccccceEEEEEcCCC-EEEEEeCCCEEEEEEcC
Confidence 345679999999765 89999999999999975
No 44
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=99.89 E-value=3.8e-20 Score=194.63 Aligned_cols=241 Identities=12% Similarity=0.112 Sum_probs=177.9
Q ss_pred CCCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCceeEeeeeccCcEEEEEEecCCCCCCCCCCccccC
Q 003907 52 SEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLH 130 (787)
Q Consensus 52 ~~~~~~~v~wa~Fd~l~~~~~~~~~vL~lG~~~G-~qVWdv~~~~~~~ells~~dg~V~~v~~lP~P~~~~~~d~F~~sr 130 (787)
..+|+..|..+.|.. +++.|++|..+| ++|||++. +++...+..|.+.|.++.+.|+.
T Consensus 61 ~~~h~~~v~~~~~~~-------~~~~l~s~~~d~~i~vwd~~~-~~~~~~~~~~~~~v~~~~~~~~~------------- 119 (312)
T 4ery_A 61 ISGHKLGISDVAWSS-------DSNLLVSASDDKTLKIWDVSS-GKCLKTLKGHSNYVFCCNFNPQS------------- 119 (312)
T ss_dssp ECCCSSCEEEEEECT-------TSSEEEEEETTSEEEEEETTT-CCEEEEEECCSSCEEEEEECSSS-------------
T ss_pred hccCCCceEEEEEcC-------CCCEEEEECCCCEEEEEECCC-CcEEEEEcCCCCCEEEEEEcCCC-------------
Confidence 356778888888863 356888888776 89999964 66777788899999999998742
Q ss_pred cEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCC-CcEEEEEecC--CeEEE
Q 003907 131 PFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFR-SSVCMVRCSP--RIVAV 207 (787)
Q Consensus 131 pLLavV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~v~tL~f~-s~V~sV~~s~--~~LaV 207 (787)
.+|+..+. +++|++||+++++.+.++..+ ..|.++.+++ ++|++
T Consensus 120 ~~l~s~~~---------------------------------d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 166 (312)
T 4ery_A 120 NLIVSGSF---------------------------------DESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVS 166 (312)
T ss_dssp SEEEEEET---------------------------------TSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEE
T ss_pred CEEEEEeC---------------------------------CCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEEE
Confidence 26654221 258999999999999999765 5899999987 56776
Q ss_pred Ee-CCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCcceeccccCCCCCcCCCc
Q 003907 208 GL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPST 286 (787)
Q Consensus 208 ~~-~~~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~~~~~lAlspr~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~ 286 (787)
+. ++.|++||+.+++.+..+.....+ ....++++| +.
T Consensus 167 ~~~d~~i~~wd~~~~~~~~~~~~~~~~------------~~~~~~~~~-------~~----------------------- 204 (312)
T 4ery_A 167 SSYDGLCRIWDTASGQCLKTLIDDDNP------------PVSFVKFSP-------NG----------------------- 204 (312)
T ss_dssp EETTSCEEEEETTTCCEEEEECCSSCC------------CEEEEEECT-------TS-----------------------
T ss_pred EeCCCcEEEEECCCCceeeEEeccCCC------------ceEEEEECC-------CC-----------------------
Confidence 55 568999999999877766432221 011223322 10
Q ss_pred CCCCCceeEeeehhhhhhhhcccceeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECCCCcEEEEec
Q 003907 287 SPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFK 366 (787)
Q Consensus 287 sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~v~~~~ 366 (787)
.. ++.+..||.|+|||+.+++.+..+.
T Consensus 205 ----~~-------------------------------------------------l~~~~~d~~i~iwd~~~~~~~~~~~ 231 (312)
T 4ery_A 205 ----KY-------------------------------------------------ILAATLDNTLKLWDYSKGKCLKTYT 231 (312)
T ss_dssp ----SE-------------------------------------------------EEEEETTTEEEEEETTTTEEEEEEC
T ss_pred ----CE-------------------------------------------------EEEEcCCCeEEEEECCCCcEEEEEE
Confidence 00 1123468899999999999999999
Q ss_pred cCCCCeE---EEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCC
Q 003907 367 AHTSPIS---ALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYS 443 (787)
Q Consensus 367 aH~~pIs---aLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg 443 (787)
+|...+. .....++|.+|++++.||. |+|||+.. + ..+.++. | +...|.+++|+|++
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~l~sg~~dg~-i~vwd~~~-------~----------~~~~~~~-~-h~~~v~~~~~~p~~ 291 (312)
T 4ery_A 232 GHKNEKYCIFANFSVTGGKWIVSGSEDNL-VYIWNLQT-------K----------EIVQKLQ-G-HTDVVISTACHPTE 291 (312)
T ss_dssp SSCCSSSCCCEEEECSSSCEEEECCTTSC-EEEEETTT-------C----------CEEEEEC-C-CSSCEEEEEECSSS
T ss_pred ecCCceEEEEEEEEeCCCcEEEEECCCCE-EEEEECCC-------c----------hhhhhhh-c-cCCcEEEEeecCcC
Confidence 9977543 3334478999999999776 99999854 2 3555554 4 34579999999999
Q ss_pred CEEEEEe--CCCeEEEEeCC
Q 003907 444 QWIAIVS--SKGTCHVFVLS 461 (787)
Q Consensus 444 ~~LAs~S--~dgTVhIwdl~ 461 (787)
++|++++ .|++|+||+.+
T Consensus 292 ~~l~s~~~~~d~~i~~W~~d 311 (312)
T 4ery_A 292 NIIASAALENDKTIKLWKSD 311 (312)
T ss_dssp SEEEEEECTTTCCEEEEECC
T ss_pred CceEEEEccCCccEEEecCC
Confidence 9999997 69999999864
No 45
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=99.88 E-value=8.1e-20 Score=190.16 Aligned_cols=270 Identities=14% Similarity=0.121 Sum_probs=181.4
Q ss_pred eEEEEEecCcEEEEEccCCCceeEeee--eccCcEEEEEEecCCCCCCCCCCccccCcEEEEEEcCCCCCCCCCCCcCCC
Q 003907 76 QVLLLGYQNGFQVLDVEDASNFNELVS--KRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHL 153 (787)
Q Consensus 76 ~vL~lG~~~G~qVWdv~~~~~~~ells--~~dg~V~~v~~lP~P~~~~~~d~F~~srpLLavV~~d~~~~~~~~~~~~~~ 153 (787)
++|++|.++.++|||++ ++++.+++. .|.+.|.+|++.|+. .+||+.+.
T Consensus 37 ~~lAvg~D~tV~iWd~~-tg~~~~~~~~~~~~~~V~~v~~~~~~-------------~~l~sgs~--------------- 87 (318)
T 4ggc_A 37 NVLAVALDNSVYLWSAS-SGDILQLLQMEQPGEYISSVAWIKEG-------------NYLAVGTS--------------- 87 (318)
T ss_dssp SEEEEEETTEEEEEETT-TCCEEEEEECCSTTCCEEEEEECTTS-------------SEEEEEET---------------
T ss_pred CEEEEEeCCEEEEEECC-CCCEEEEEEecCCCCeEEEEEECCCC-------------CEEEEEEC---------------
Confidence 48999998889999996 477777765 456789999998742 26654221
Q ss_pred CCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCC-CcEEEEEecCCeEEEEeC-CeEEEEECCCCc-eeEEEEec
Q 003907 154 GGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFR-SSVCMVRCSPRIVAVGLA-TQIYCFDALTLE-NKFSVLTY 230 (787)
Q Consensus 154 ~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~v~tL~f~-s~V~sV~~s~~~LaV~~~-~~I~iwD~~T~e-~l~tl~t~ 230 (787)
+++|++||+++++++.+++.+ ..+..+..++++|+++.. ..+.+|+..+.. .+.++..|
T Consensus 88 ------------------Dg~v~iw~~~~~~~~~~~~~h~~~~~~~~~~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (318)
T 4ggc_A 88 ------------------SAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGH 149 (318)
T ss_dssp ------------------TSEEEEEETTTTEEEEEEECCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECC
T ss_pred ------------------CCcEEEeecCCceeEEEecCccceEEEeecCCCEEEEEecCCceEeeecCCCceeEEEEcCc
Confidence 368999999999999999876 478889999999988764 568999987654 34445555
Q ss_pred CCcccCCCCccccccccceeEEcc--ceEEEecCCceecCcceeccccCCCCCcCCCcCCCCCceeEeeehhhhhhhhcc
Q 003907 231 PVPQLAGQGAVGINVGYGPMAVGP--RWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAG 308 (787)
Q Consensus 231 p~p~~~~~~~~~~~~~~~~lAlsp--r~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~sp~~g~lva~~a~d~sk~la~G 308 (787)
... ...+++.+ ++|+.++.+.. ...|+..+........
T Consensus 150 ~~~-------------~~~~~~~~~~~~l~s~~~d~~-----i~iwd~~~~~~~~~~~---------------------- 189 (318)
T 4ggc_A 150 SQE-------------VCGLRWAPDGRHLASGGNDNL-----VNVWPSAPGEGGWVPL---------------------- 189 (318)
T ss_dssp SSC-------------EEEEEECTTSSEEEEEETTSC-----EEEEESSCBTTBSCCS----------------------
T ss_pred cCc-------------eEEEEEcCCCCEEEEEecCcc-----eeEEECCCCcccccce----------------------
Confidence 442 23455655 77877765421 1123322210000000
Q ss_pred cceeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEE
Q 003907 309 LSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTAS 388 (787)
Q Consensus 309 ~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~v~~~~aH~~pIsaLaFSpdG~lLATaS 388 (787)
.... ...+......+.+... .....+.+..+++|+|||.......... .|..++..++|+|++..+++++
T Consensus 190 --~~~~------~~~~~v~~~~~~~~~~-~~~~~~~~~~~~~i~lwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~s 259 (318)
T 4ggc_A 190 --QTFT------QHQGAVKAVAWCPWQS-NVLATGGGTSDRHIRIWNVCSGACLSAV-DAHSQVCSILWSPHYKELISGH 259 (318)
T ss_dssp --EEEC------CCCSCEEEEEECTTST-TEEEEEECTTTCEEEEEETTTCCEEEEE-ECSSCEEEEEEETTTTEEEEEE
T ss_pred --eeec------ccCCceEEEEecCCCC-cEEEEEecCCCCEEEEEecccccccccc-cceeeeeeeeecccccceEEEE
Confidence 0000 0000000011111110 1112235678899999999988766554 5667899999999999998876
Q ss_pred --cCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEeCCC
Q 003907 389 --VYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSP 462 (787)
Q Consensus 389 --~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~~ 462 (787)
.|+ .|+|||+.. + ..+.++. | |...|++|+|||||++||++|.||+|+|||+..
T Consensus 260 g~~d~-~i~iwd~~~-------~----------~~~~~l~-g-H~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~~ 315 (318)
T 4ggc_A 260 GFAQN-QLVIWKYPT-------M----------AKVAELK-G-HTSRVLSLTMSPDGATVASAAADETLRLWRCFE 315 (318)
T ss_dssp CTTTC-CEEEEETTT-------C----------CEEEEEC-C-CSSCEEEEEECTTSSCEEEEETTTEEEEECCSC
T ss_pred EcCCC-EEEEEECCC-------C----------cEEEEEc-C-CCCCEEEEEEcCCCCEEEEEecCCeEEEEECCC
Confidence 445 599999854 3 4677775 5 346799999999999999999999999999964
No 46
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=99.88 E-value=2.2e-20 Score=200.64 Aligned_cols=239 Identities=11% Similarity=0.199 Sum_probs=165.3
Q ss_pred CCCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCceeEeeeeccCcEEEEEEecCCCCCCCCCCccccC
Q 003907 52 SEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLH 130 (787)
Q Consensus 52 ~~~~~~~v~wa~Fd~l~~~~~~~~~vL~lG~~~G-~qVWdv~~~~~~~ells~~dg~V~~v~~lP~P~~~~~~d~F~~sr 130 (787)
..+|.+.|..+.|.. ++.+|++|..+| ++|||+.. ++....+..|.++|..+.+.|+.
T Consensus 72 l~~h~~~V~~~~~~~-------~~~~l~s~s~D~~v~lwd~~~-~~~~~~~~~h~~~v~~v~~sp~~------------- 130 (343)
T 2xzm_R 72 LTGHNHFVSDLALSQ-------ENCFAISSSWDKTLRLWDLRT-GTTYKRFVGHQSEVYSVAFSPDN------------- 130 (343)
T ss_dssp ECCCSSCEEEEEECS-------STTEEEEEETTSEEEEEETTS-SCEEEEEECCCSCEEEEEECSST-------------
T ss_pred hccCCCceEEEEECC-------CCCEEEEEcCCCcEEEEECCC-CcEEEEEcCCCCcEEEEEECCCC-------------
Confidence 456788898888863 356788888776 99999964 66677788899999999999752
Q ss_pred cEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEE---eCCCcEEEEEecCC----
Q 003907 131 PFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVL---RFRSSVCMVRCSPR---- 203 (787)
Q Consensus 131 pLLavV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~v~tL---~f~s~V~sV~~s~~---- 203 (787)
.+|+..+. +++|++||+......... .+...|..+++++.
T Consensus 131 ~~l~s~~~---------------------------------d~~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 177 (343)
T 2xzm_R 131 RQILSAGA---------------------------------EREIKLWNILGECKFSSAEKENHSDWVSCVRYSPIMKSA 177 (343)
T ss_dssp TEEEEEET---------------------------------TSCEEEEESSSCEEEECCTTTSCSSCEEEEEECCCCCSC
T ss_pred CEEEEEcC---------------------------------CCEEEEEeccCCceeeeecccCCCceeeeeeeccccccc
Confidence 25654331 258999999844333222 23457999999873
Q ss_pred --------eEEEE-eCCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEcc--ceEEEecCCceecCccee
Q 003907 204 --------IVAVG-LATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP--RWLAYASNTLLLSNSGRL 272 (787)
Q Consensus 204 --------~LaV~-~~~~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~~~~~lAlsp--r~LAyas~~~~l~~~g~~ 272 (787)
+|+++ .++.|++|| .+.+...++..|..+ ...++++| ++|
T Consensus 178 ~~~~~~~~~l~s~~~d~~i~iwd-~~~~~~~~~~~h~~~-------------v~~~~~s~~g~~l--------------- 228 (343)
T 2xzm_R 178 NKVQPFAPYFASVGWDGRLKVWN-TNFQIRYTFKAHESN-------------VNHLSISPNGKYI--------------- 228 (343)
T ss_dssp SCCCSSCCEEEEEETTSEEEEEE-TTTEEEEEEECCSSC-------------EEEEEECTTSSEE---------------
T ss_pred cccCCCCCEEEEEcCCCEEEEEc-CCCceeEEEcCcccc-------------ceEEEECCCCCEE---------------
Confidence 46654 467899999 456666666665542 22344433 122
Q ss_pred ccccCCCCCcCCCcCCCCCceeEeeehhhhhhhhcccceeecccccccCCCCCCCCcccCCccccccccccccCCCceEE
Q 003907 273 SPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVV 352 (787)
Q Consensus 273 s~q~lt~~~~s~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~ 352 (787)
++++.||.|+
T Consensus 229 ----------------------------------------------------------------------~sgs~dg~v~ 238 (343)
T 2xzm_R 229 ----------------------------------------------------------------------ATGGKDKKLL 238 (343)
T ss_dssp ----------------------------------------------------------------------EEEETTCEEE
T ss_pred ----------------------------------------------------------------------EEEcCCCeEE
Confidence 2345688999
Q ss_pred EEECCCC-cEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEe-----
Q 003907 353 VKDFVTR-AIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLH----- 426 (787)
Q Consensus 353 IwDl~s~-~~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~----- 426 (787)
|||+.+. .....+ .|..+|.+++|+|++.+|++++. ++ |+|||+.... . ..+..+.
T Consensus 239 iwd~~~~~~~~~~~-~~~~~v~~v~~sp~~~~la~~~d-~~-v~iw~~~~~~-----~----------~~~~~~~~~~~~ 300 (343)
T 2xzm_R 239 IWDILNLTYPQREF-DAGSTINQIAFNPKLQWVAVGTD-QG-VKIFNLMTQS-----K----------APVCTIEAEPIT 300 (343)
T ss_dssp EEESSCCSSCSEEE-ECSSCEEEEEECSSSCEEEEEES-SC-EEEEESSSCC-----S----------CSEEECCCCSGG
T ss_pred EEECCCCcccceee-cCCCcEEEEEECCCCCEEEEECC-CC-EEEEEeCCCC-----C----------CceEEeecCcch
Confidence 9999543 334444 35567999999999999886654 55 9999986421 0 1112221
Q ss_pred -----cccccccEEEEEEccCCCEEEEEeCCCeEEEEeCCC
Q 003907 427 -----RGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSP 462 (787)
Q Consensus 427 -----rG~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~~ 462 (787)
.| +...|.+++|+|||++|++++.||+|+||++..
T Consensus 301 ~~~~~~~-~~~~v~~~~~sp~g~~l~sg~~Dg~v~~w~~~~ 340 (343)
T 2xzm_R 301 KAEGQKG-KNPQCTSLAWNALGKKLFAGFTDGVIRTFSFET 340 (343)
T ss_dssp GBTTBCC-SCCCEEEEEECSSSCCEEEEETTSEEEEEEEEE
T ss_pred hhhhhcC-CCCceEEEEECCCCCeEEEecCCceEEEEEEEc
Confidence 12 334699999999999999999999999999864
No 47
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=99.88 E-value=4e-21 Score=208.17 Aligned_cols=253 Identities=11% Similarity=0.103 Sum_probs=179.0
Q ss_pred CCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccC---CCceeEeeeeccCcEEEEEEecCCCCCCCCCCcccc
Q 003907 54 DLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVED---ASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKL 129 (787)
Q Consensus 54 ~~~~~v~wa~Fd~l~~~~~~~~~vL~lG~~~G-~qVWdv~~---~~~~~ells~~dg~V~~v~~lP~P~~~~~~d~F~~s 129 (787)
.+.+.|..+.|.. +++.|++|..+| ++|||+.. .......+..|.++|.++++.|+.
T Consensus 65 ~~~~~v~~~~~s~-------~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~------------ 125 (416)
T 2pm9_A 65 QVDSKFNDLDWSH-------NNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQ------------ 125 (416)
T ss_dssp CCSSCEEEEEECS-------SSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSS------------
T ss_pred ecCCceEEEEECC-------CCCeEEEEccCCeEEEeecccccccccchhhccCCccceEEEEEcCCC------------
Confidence 3677899888853 356788887765 99999975 133666778899999999998741
Q ss_pred CcEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCe------EEEEE----eCCCcEEEEE
Q 003907 130 HPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHC------YEHVL----RFRSSVCMVR 199 (787)
Q Consensus 130 rpLLavV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~------~v~tL----~f~s~V~sV~ 199 (787)
..+|++ ++. +++|++||+++++ ....+ .+...|.+++
T Consensus 126 ~~~l~s-~~~--------------------------------dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 172 (416)
T 2pm9_A 126 DNVLAS-GGN--------------------------------NGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLA 172 (416)
T ss_dssp TTBEEE-ECS--------------------------------SSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEE
T ss_pred CCEEEE-EcC--------------------------------CCeEEEEECCCCccccccccccccccccCCCCCeeEEE
Confidence 125544 211 2589999999887 43333 2446899999
Q ss_pred ecC---CeEEEEe-CCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCcceeccc
Q 003907 200 CSP---RIVAVGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQ 275 (787)
Q Consensus 200 ~s~---~~LaV~~-~~~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~~~~~lAlspr~LAyas~~~~l~~~g~~s~q 275 (787)
+++ ++|+++. ++.|++||+.+++.+.++..+.... +. ......++++| +
T Consensus 173 ~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~----~~---~~~v~~~~~~~-------~------------- 225 (416)
T 2pm9_A 173 WNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNS----GI---KQQLSVVEWHP-------K------------- 225 (416)
T ss_dssp ECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSS----CC---CCCEEEEEECS-------S-------------
T ss_pred eCCCCCcEEEEEcCCCCEEEEECCCCCcceEEecccccc----cc---CCceEEEEECC-------C-------------
Confidence 987 4677765 5679999999998877776432100 00 00122333332 1
Q ss_pred cCCCCCcCCCcCCCCCceeEeeehhhhhhhhcccceeecccccccCCCCCCCCcccCCccccccccccccCCCc---eEE
Q 003907 276 NLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAG---IVV 352 (787)
Q Consensus 276 ~lt~~~~s~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG---~V~ 352 (787)
+..+ ++.+..+| .|+
T Consensus 226 --------------~~~~------------------------------------------------l~~~~~d~~~~~i~ 243 (416)
T 2pm9_A 226 --------------NSTR------------------------------------------------VATATGSDNDPSIL 243 (416)
T ss_dssp --------------CTTE------------------------------------------------EEEEECCSSSCCCC
T ss_pred --------------CCCE------------------------------------------------EEEEECCCCCceEE
Confidence 0000 01122344 899
Q ss_pred EEECCCC-cEEEEec-cCCCCeEEEEECC-CCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEeccc
Q 003907 353 VKDFVTR-AIISQFK-AHTSPISALCFDP-SGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGI 429 (787)
Q Consensus 353 IwDl~s~-~~v~~~~-aH~~pIsaLaFSp-dG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~ 429 (787)
+||+.++ +.+..+. +|..+|.+++|+| +|++|++++.||+ |+|||+.. + ..+..+. +
T Consensus 244 ~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~-v~~wd~~~-------~----------~~~~~~~-~- 303 (416)
T 2pm9_A 244 IWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNT-VLLWNPES-------A----------EQLSQFP-A- 303 (416)
T ss_dssp EEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSE-EEEECSSS-------C----------CEEEEEE-C-
T ss_pred EEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCC-EEEeeCCC-------C----------ccceeec-C-
Confidence 9999986 6778888 9999999999999 9999999999665 99999854 2 3566665 3
Q ss_pred ccccEEEEEEccCC-CEEEEEeCCCeEEEEeCCCCCCcc
Q 003907 430 TSATIQDICFSHYS-QWIAIVSSKGTCHVFVLSPFGGDS 467 (787)
Q Consensus 430 ~~a~I~slaFSpDg-~~LAs~S~dgTVhIwdl~~~gg~~ 467 (787)
+...|.+++|+||+ ++|++++.|++|+||++.......
T Consensus 304 ~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~ 342 (416)
T 2pm9_A 304 RGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNTL 342 (416)
T ss_dssp SSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCCSS
T ss_pred CCCceEEEEECCCCCCEEEEEecCCcEEEEEccCCCCCc
Confidence 34569999999999 899999999999999998765443
No 48
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=99.88 E-value=1e-19 Score=199.24 Aligned_cols=269 Identities=12% Similarity=0.055 Sum_probs=184.7
Q ss_pred CeEEEEEecCcEEEEEccCCCceeEeeee-ccCcEEEEEEecCCCCCCCCCCccccCcEEEEEEcCCCCCCCCCCCcCCC
Q 003907 75 KQVLLLGYQNGFQVLDVEDASNFNELVSK-RDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHL 153 (787)
Q Consensus 75 ~~vL~lG~~~G~qVWdv~~~~~~~ells~-~dg~V~~v~~lP~P~~~~~~d~F~~srpLLavV~~d~~~~~~~~~~~~~~ 153 (787)
..+++.|.++.++|||++. +++..++.. |.++|.++++.|+. .+|++.+.
T Consensus 104 ~~l~~~~~d~~v~lw~~~~-~~~~~~~~~~~~~~v~~v~~s~~~-------------~~l~~~~~--------------- 154 (401)
T 4aez_A 104 LNVVAVALERNVYVWNADS-GSVSALAETDESTYVASVKWSHDG-------------SFLSVGLG--------------- 154 (401)
T ss_dssp TSEEEEEETTEEEEEETTT-CCEEEEEECCTTCCEEEEEECTTS-------------SEEEEEET---------------
T ss_pred CCEEEEECCCeEEEeeCCC-CcEeEeeecCCCCCEEEEEECCCC-------------CEEEEECC---------------
Confidence 4577777677799999965 556666555 78899999999742 26665332
Q ss_pred CCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCC-CcEEEEEecCCeEEEEe-CCeEEEEECCC-CceeEEEEec
Q 003907 154 GGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFR-SSVCMVRCSPRIVAVGL-ATQIYCFDALT-LENKFSVLTY 230 (787)
Q Consensus 154 ~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~v~tL~f~-s~V~sV~~s~~~LaV~~-~~~I~iwD~~T-~e~l~tl~t~ 230 (787)
+++|++||+.+++.+.++..+ ..|.++.+++++|+++. ++.|++||+.+ .+....+..|
T Consensus 155 ------------------dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~ 216 (401)
T 4aez_A 155 ------------------NGLVDIYDVESQTKLRTMAGHQARVGCLSWNRHVLSSGSRSGAIHHHDVRIANHQIGTLQGH 216 (401)
T ss_dssp ------------------TSCEEEEETTTCCEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECC
T ss_pred ------------------CCeEEEEECcCCeEEEEecCCCCceEEEEECCCEEEEEcCCCCEEEEecccCcceeeEEcCC
Confidence 257999999999999999754 69999999999888866 56899999984 5556666665
Q ss_pred CCcccCCCCccccccccceeEEcc--ceEEEecCCceecCcceeccccCCCCCcCCCcCCCCCceeEeeehhhhhhhhcc
Q 003907 231 PVPQLAGQGAVGINVGYGPMAVGP--RWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAG 308 (787)
Q Consensus 231 p~p~~~~~~~~~~~~~~~~lAlsp--r~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~sp~~g~lva~~a~d~sk~la~G 308 (787)
..+ ...++++| ++||+++.+..+ ..|+..+. ..+
T Consensus 217 ~~~-------------v~~~~~~~~~~~l~s~~~d~~v-----~iwd~~~~------------~~~-------------- 252 (401)
T 4aez_A 217 SSE-------------VCGLAWRSDGLQLASGGNDNVV-----QIWDARSS------------IPK-------------- 252 (401)
T ss_dssp SSC-------------EEEEEECTTSSEEEEEETTSCE-----EEEETTCS------------SEE--------------
T ss_pred CCC-------------eeEEEEcCCCCEEEEEeCCCeE-----EEccCCCC------------Ccc--------------
Confidence 542 35678887 788888764211 12332211 000
Q ss_pred cceeecccccccCCCCCCCCcccCCccccccccccc--cCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEE
Q 003907 309 LSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGAD--MDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVT 386 (787)
Q Consensus 309 ~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s--~~~dG~V~IwDl~s~~~v~~~~aH~~pIsaLaFSpdG~lLAT 386 (787)
.++..+ ......+.++++... .++. +..||.|++||+.+++.+..+. |..+|.+++|+|+|++|++
T Consensus 253 --~~~~~~------~~~v~~~~~~p~~~~---ll~~~~gs~d~~i~i~d~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~ 320 (401)
T 4aez_A 253 --FTKTNH------NAAVKAVAWCPWQSN---LLATGGGTMDKQIHFWNAATGARVNTVD-AGSQVTSLIWSPHSKEIMS 320 (401)
T ss_dssp --EEECCC------SSCCCEEEECTTSTT---EEEEECCTTTCEEEEEETTTCCEEEEEE-CSSCEEEEEECSSSSEEEE
T ss_pred --EEecCC------cceEEEEEECCCCCC---EEEEecCCCCCEEEEEECCCCCEEEEEe-CCCcEEEEEECCCCCeEEE
Confidence 001000 011122223332211 1222 3479999999999999988886 5678999999999999999
Q ss_pred EE--cCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEeCCCCC
Q 003907 387 AS--VYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFG 464 (787)
Q Consensus 387 aS--~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~~~g 464 (787)
++ .+| .|+|||+.. + ......++. + +...|.+++|+|||++|++++.||+|+||++....
T Consensus 321 ~~g~~dg-~i~v~~~~~-------~--------~~~~~~~~~-~-h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~~~ 382 (401)
T 4aez_A 321 THGFPDN-NLSIWSYSS-------S--------GLTKQVDIP-A-HDTRVLYSALSPDGRILSTAASDENLKFWRVYDGD 382 (401)
T ss_dssp EECTTTC-EEEEEEEET-------T--------EEEEEEEEE-C-CSSCCCEEEECTTSSEEEEECTTSEEEEEECCC--
T ss_pred EeecCCC-cEEEEecCC-------c--------cceeEEEec-C-CCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCc
Confidence 65 555 599999853 1 012333443 3 34579999999999999999999999999998654
No 49
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=99.88 E-value=1.3e-20 Score=221.88 Aligned_cols=280 Identities=15% Similarity=0.175 Sum_probs=192.7
Q ss_pred hceeeeeccCCcceeeehhhcccccceeccc--CCCCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCC-
Q 003907 20 SSCLKTVSTNASTVASTVRSAGASVAASISN--ASEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDAS- 95 (787)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~--~~~~~~~~v~wa~Fd~l~~~~~~~~~vL~lG~~~G-~qVWdv~~~~- 95 (787)
...+.-+-+|..++...+..|...++..+.. ...+|++.|..+.|.. ....+|++|..+| ++|||+...+
T Consensus 344 ~~~~~~~~~G~~~~~~al~~a~~~~~~~l~~~~~l~~H~~~V~~v~~~~------~~~~~l~s~s~D~~i~~W~~~~~~~ 417 (694)
T 3dm0_A 344 RTAVINAASGRQTVDAALAAAQTNAAAGLVLKGTMRAHTDMVTAIATPI------DNADIIVSASRDKSIILWKLTKDDK 417 (694)
T ss_dssp HHHHHHHHHTSSCHHHHHHHHHHHHHCSSEEEEEEECCSSCEEEEECCT------TCCSEEEEEETTSEEEEEECCCSTT
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHhhhcccchhhhcccCCceeEEEEecC------CCCCEEEEEeCCCcEEEEEccCCCc
Confidence 3334334456666655555554444433332 3578999999999863 1246888888876 9999996532
Q ss_pred ---ceeEeeeeccCcEEEEEEecCCCCCCCCCCccccCcEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCC
Q 003907 96 ---NFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSP 172 (787)
Q Consensus 96 ---~~~ells~~dg~V~~v~~lP~P~~~~~~d~F~~srpLLavV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p 172 (787)
.....+..|.+.|.++.+.|+. .+|+..+. +
T Consensus 418 ~~~~~~~~~~~h~~~v~~v~~s~~g-------------~~l~sgs~---------------------------------D 451 (694)
T 3dm0_A 418 AYGVAQRRLTGHSHFVEDVVLSSDG-------------QFALSGSW---------------------------------D 451 (694)
T ss_dssp CSCEEEEEEECCSSCEEEEEECTTS-------------SEEEEEET---------------------------------T
T ss_pred ccccccceecCCCCcEEEEEECCCC-------------CEEEEEeC---------------------------------C
Confidence 2345678899999999998742 26654221 3
Q ss_pred CEEEEEECCCCeEEEEEeCC-CcEEEEEecC--CeEEEE-eCCeEEEEECCCCceeEEEEecCCcccCCCCccccccccc
Q 003907 173 TAVRFYSFQSHCYEHVLRFR-SSVCMVRCSP--RIVAVG-LATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYG 248 (787)
Q Consensus 173 ~tVrlWdlktg~~v~tL~f~-s~V~sV~~s~--~~LaV~-~~~~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~~~~ 248 (787)
++|+|||+.+++.++++..+ ..|.+|++++ +.|+++ .++.|++||.... ...++...... +. ....
T Consensus 452 g~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~-~~~~~~~~~~~----h~-----~~v~ 521 (694)
T 3dm0_A 452 GELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGE-CKYTISEGGEG----HR-----DWVS 521 (694)
T ss_dssp SEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSC-EEEEECSSTTS----CS-----SCEE
T ss_pred CcEEEEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCC-cceeeccCCCC----CC-----CcEE
Confidence 68999999999999999755 6899999987 566665 4668999997543 23333211000 00 0011
Q ss_pred eeEEccceEEEecCCceecCcceeccccCCCCCcCCCcCCCCCceeEeeehhhhhhhhcccceeecccccccCCCCCCCC
Q 003907 249 PMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSP 328 (787)
Q Consensus 249 ~lAlspr~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~ 328 (787)
.++ +..+. .
T Consensus 522 ~~~-------~~~~~---------------------------~------------------------------------- 530 (694)
T 3dm0_A 522 CVR-------FSPNT---------------------------L------------------------------------- 530 (694)
T ss_dssp EEE-------ECSCS---------------------------S-------------------------------------
T ss_pred EEE-------EeCCC---------------------------C-------------------------------------
Confidence 122 21110 0
Q ss_pred cccCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCC
Q 003907 329 VSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGS 408 (787)
Q Consensus 329 ~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~ 408 (787)
...+++++.||+|+|||+.+++.+..+.+|..+|.+++|+|+|++|+|++.||+ |+|||+..
T Consensus 531 ----------~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~-i~iwd~~~------- 592 (694)
T 3dm0_A 531 ----------QPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGV-VLLWDLAE------- 592 (694)
T ss_dssp ----------SCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSB-CEEEETTT-------
T ss_pred ----------cceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCe-EEEEECCC-------
Confidence 001224567899999999999999999999999999999999999999999775 99999954
Q ss_pred CCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEeCCCCC
Q 003907 409 GNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFG 464 (787)
Q Consensus 409 g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~~~g 464 (787)
+ .+++.+. ....|.+++|+||+.+|+++++ +.|+|||+....
T Consensus 593 ~----------~~~~~~~---~~~~v~~~~~sp~~~~l~~~~~-~~i~iwd~~~~~ 634 (694)
T 3dm0_A 593 G----------KKLYSLE---ANSVIHALCFSPNRYWLCAATE-HGIKIWDLESKS 634 (694)
T ss_dssp T----------EEEECCB---CSSCEEEEEECSSSSEEEEEET-TEEEEEETTTTE
T ss_pred C----------ceEEEec---CCCcEEEEEEcCCCcEEEEEcC-CCEEEEECCCCC
Confidence 2 4555543 2346999999999999888764 569999998643
No 50
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=99.87 E-value=3.1e-20 Score=200.63 Aligned_cols=282 Identities=13% Similarity=0.067 Sum_probs=187.5
Q ss_pred CCCCCCcEEEEEEeeccCCCCCCC-eEEEEEecCc-EEEEEccCCCceeEeee--eccCcEEEEEEecCCCCCCCCCCcc
Q 003907 52 SEDLKDQVTWAGFDRLEYGPSVFK-QVLLLGYQNG-FQVLDVEDASNFNELVS--KRDGPVSFLQMQPFPVKDDGCEGFR 127 (787)
Q Consensus 52 ~~~~~~~v~wa~Fd~l~~~~~~~~-~vL~lG~~~G-~qVWdv~~~~~~~ells--~~dg~V~~v~~lP~P~~~~~~d~F~ 127 (787)
..+|.+.|..+.|.. ++ ++|++|..+| ++|||+.. ++....+. .|.++|..+.+.|.
T Consensus 69 ~~~h~~~v~~~~~~~-------~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~h~~~v~~~~~~~~----------- 129 (383)
T 3ei3_B 69 ASPFDRRVTSLEWHP-------THPTTVAVGSKGGDIILWDYDV-QNKTSFIQGMGPGDAITGMKFNQF----------- 129 (383)
T ss_dssp ECCCSSCEEEEEECS-------SCTTEEEEEEBTSCEEEEETTS-TTCEEEECCCSTTCBEEEEEEETT-----------
T ss_pred ccCCCCCEEEEEECC-------CCCCEEEEEcCCCeEEEEeCCC-cccceeeecCCcCCceeEEEeCCC-----------
Confidence 567889999999974 23 6888888776 99999964 44555554 58899999999872
Q ss_pred ccCcEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeC-C---CcEEEEEecC-
Q 003907 128 KLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRF-R---SSVCMVRCSP- 202 (787)
Q Consensus 128 ~srpLLavV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~v~tL~f-~---s~V~sV~~s~- 202 (787)
...+|++.+. +++|++||+++ +.+..+.. . ..|.++++++
T Consensus 130 -~~~~l~s~~~---------------------------------d~~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~ 174 (383)
T 3ei3_B 130 -NTNQLFVSSI---------------------------------RGATTLRDFSG-SVIQVFAKTDSWDYWYCCVDVSVS 174 (383)
T ss_dssp -EEEEEEEEET---------------------------------TTEEEEEETTS-CEEEEEECCCCSSCCEEEEEEETT
T ss_pred -CCCEEEEEeC---------------------------------CCEEEEEECCC-CceEEEeccCCCCCCeEEEEECCC
Confidence 1125654321 36899999986 55555543 2 5799999987
Q ss_pred -CeEEEEe-CCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEcc--c-eEEEecCCceecCcceeccccC
Q 003907 203 -RIVAVGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP--R-WLAYASNTLLLSNSGRLSPQNL 277 (787)
Q Consensus 203 -~~LaV~~-~~~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~~~~~lAlsp--r-~LAyas~~~~l~~~g~~s~q~l 277 (787)
++|+++. ++.|++||+ +++.+.++..|..+ ...++++| + +|+.++.+..+ ..|+..
T Consensus 175 ~~~l~~~~~d~~i~i~d~-~~~~~~~~~~h~~~-------------v~~~~~~~~~~~~l~s~~~d~~i-----~iwd~~ 235 (383)
T 3ei3_B 175 RQMLATGDSTGRLLLLGL-DGHEIFKEKLHKAK-------------VTHAEFNPRCDWLMATSSVDATV-----KLWDLR 235 (383)
T ss_dssp TTEEEEEETTSEEEEEET-TSCEEEEEECSSSC-------------EEEEEECSSCTTEEEEEETTSEE-----EEEEGG
T ss_pred CCEEEEECCCCCEEEEEC-CCCEEEEeccCCCc-------------EEEEEECCCCCCEEEEEeCCCEE-----EEEeCC
Confidence 6777765 568999998 67778888776553 45688888 4 77877655211 123322
Q ss_pred CCCCcCCCcCCCCCceeEeeehhhhhhhhcccceeecccccccCCCCCCCCcccCC-ccccccccccccCCCceEEEEEC
Q 003907 278 TPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNS-VWKVGRHAGADMDNAGIVVVKDF 356 (787)
Q Consensus 278 t~~~~s~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~~s~s~-~~~~~~~~~~s~~~dG~V~IwDl 356 (787)
+... .+.++ +.+ . ..+....+.+++ +.+ .++.+..||.|+|||+
T Consensus 236 ~~~~--------~~~~~----------------~~~-~------~~~~v~~~~~s~~~~~----~l~~~~~d~~i~iwd~ 280 (383)
T 3ei3_B 236 NIKD--------KNSYI----------------AEM-P------HEKPVNAAYFNPTDST----KLLTTDQRNEIRVYSS 280 (383)
T ss_dssp GCCS--------TTCEE----------------EEE-E------CSSCEEEEEECTTTSC----EEEEEESSSEEEEEET
T ss_pred CCCc--------ccceE----------------EEe-c------CCCceEEEEEcCCCCC----EEEEEcCCCcEEEEEC
Confidence 2100 00010 000 0 001112223333 222 3456778999999999
Q ss_pred CCCcEEEEeccCC-----------------CCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcc
Q 003907 357 VTRAIISQFKAHT-----------------SPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSH 419 (787)
Q Consensus 357 ~s~~~v~~~~aH~-----------------~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~ 419 (787)
.+++.+..+..|. ..+.+++|+|+|++ +++.||. |+|||+.. +
T Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~-i~iwd~~~-------~---------- 340 (383)
T 3ei3_B 281 YDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRT-IDIYDANS-------G---------- 340 (383)
T ss_dssp TBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCC-EEEEETTT-------C----------
T ss_pred CCCccccccccccccccccccceEEeccCCCCceEEEecCCccc--ccCCCCe-EEEEecCC-------C----------
Confidence 9988777777653 34455777777776 6677665 99999864 3
Q ss_pred eEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEeCCC
Q 003907 420 VHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSP 462 (787)
Q Consensus 420 ~~l~~l~rG~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~~ 462 (787)
..+..+....+...+..++|+|||++|++++ |++|+||+++.
T Consensus 341 ~~~~~l~~~~~~~~~~~~~~s~~g~~l~s~s-d~~i~iw~~~~ 382 (383)
T 3ei3_B 341 GLVHQLRDPNAAGIISLNKFSPTGDVLASGM-GFNILIWNRED 382 (383)
T ss_dssp CEEEEECBTTBCSCCCEEEECTTSSEEEEEE-TTEEEEEECC-
T ss_pred ceeeeecCCCCCceEEEEEEecCccEEEEec-CCcEEEEecCC
Confidence 4666775433345677889999999999997 89999999874
No 51
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=99.87 E-value=1.5e-20 Score=198.67 Aligned_cols=307 Identities=11% Similarity=0.081 Sum_probs=189.0
Q ss_pred CCCCCcEEEEEEeeccCCCCCCCeEEEEEec---Cc-EEEEEccCCCceeEe-eeeccCcEEEEEEecCCCCCCCCCCcc
Q 003907 53 EDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQ---NG-FQVLDVEDASNFNEL-VSKRDGPVSFLQMQPFPVKDDGCEGFR 127 (787)
Q Consensus 53 ~~~~~~v~wa~Fd~l~~~~~~~~~vL~lG~~---~G-~qVWdv~~~~~~~el-ls~~dg~V~~v~~lP~P~~~~~~d~F~ 127 (787)
.+|++.|..+.|.. + ...++++|.. +| ++|||++. ++...+ ...|.++|.++.+.|+..
T Consensus 15 ~~h~~~v~~~~~~p----~--~~~l~~~~s~~~~d~~v~iw~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~--------- 78 (357)
T 3i2n_A 15 KGFNYTVFDCKWVP----C--SAKFVTMGNFARGTGVIQLYEIQH-GDLKLLREIEKAKPIKCGTFGATSL--------- 78 (357)
T ss_dssp EECSSCEEEEEECT----T--SSEEEEEEC--CCCEEEEEEEECS-SSEEEEEEEEESSCEEEEECTTCCT---------
T ss_pred cCCCCceEEEEEcC----C--CceEEEecCccCCCcEEEEEeCCC-CcccceeeecccCcEEEEEEcCCCC---------
Confidence 45888999999973 1 2467778865 55 99999965 444433 346788999999987410
Q ss_pred ccCcEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCe-EEEEEeCC-CcEEEEEe-----
Q 003907 128 KLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHC-YEHVLRFR-SSVCMVRC----- 200 (787)
Q Consensus 128 ~srpLLavV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~-~v~tL~f~-s~V~sV~~----- 200 (787)
...+|++.+. +++|++||+.+++ .+..+..+ ..|.++++
T Consensus 79 -~~~~l~~~~~---------------------------------dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 124 (357)
T 3i2n_A 79 -QQRYLATGDF---------------------------------GGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLG 124 (357)
T ss_dssp -TTCCEEEEET---------------------------------TSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGG
T ss_pred -CCceEEEecC---------------------------------CCeEEEEeCCCCCccEEEEEecccceEEEeeccccc
Confidence 0235655321 2589999999988 88888754 68999965
Q ss_pred -cC--CeEEEEe-CCeEEEEECCCCc-eeEEEEecCCcccCCCCccccccccceeE----Ecc--ceEEEecCCceecCc
Q 003907 201 -SP--RIVAVGL-ATQIYCFDALTLE-NKFSVLTYPVPQLAGQGAVGINVGYGPMA----VGP--RWLAYASNTLLLSNS 269 (787)
Q Consensus 201 -s~--~~LaV~~-~~~I~iwD~~T~e-~l~tl~t~p~p~~~~~~~~~~~~~~~~lA----lsp--r~LAyas~~~~l~~~ 269 (787)
++ +.|+++. ++.|++||+.+++ .+.++..+.... ......++ ++| ++|++++.+..+
T Consensus 125 ~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~---------~~~v~~~~~~~~~~~~~~~l~~~~~d~~i--- 192 (357)
T 3i2n_A 125 IGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGEN---------KRDCWTVAFGNAYNQEERVVCAGYDNGDI--- 192 (357)
T ss_dssp CC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSC---------CCCEEEEEEECCCC-CCCEEEEEETTSEE---
T ss_pred cCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCC---------CCceEEEEEEeccCCCCCEEEEEccCCeE---
Confidence 33 4777765 5689999999987 566665433210 00123344 344 778777654211
Q ss_pred ceeccccCCCCCcCCCcCCCCCceeEeeehhhhhhhhcccceeecccccccCCCCCCCCcccCCccccccccccccCCCc
Q 003907 270 GRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAG 349 (787)
Q Consensus 270 g~~s~q~lt~~~~s~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG 349 (787)
..|+..+. .+... .. .......+.+++.. ..+..++.+..+|
T Consensus 193 --~i~d~~~~------------~~~~~-----------------~~------~~~~v~~~~~~~~~-~~~~~l~~~~~dg 234 (357)
T 3i2n_A 193 --KLFDLRNM------------ALRWE-----------------TN------IKNGVCSLEFDRKD-ISMNKLVATSLEG 234 (357)
T ss_dssp --EEEETTTT------------EEEEE-----------------EE------CSSCEEEEEESCSS-SSCCEEEEEESTT
T ss_pred --EEEECccC------------ceeee-----------------cC------CCCceEEEEcCCCC-CCCCEEEEECCCC
Confidence 12222111 00000 00 00001112222200 0112244677899
Q ss_pred eEEEEECCCCcEEEEec-----cCCCCeEEEEECCCCC-EEEEEEcCCCEEEEEeCCCCccc---CCCCCCccccCCcce
Q 003907 350 IVVVKDFVTRAIISQFK-----AHTSPISALCFDPSGT-LLVTASVYGNNINIFRIMPSCMR---SGSGNHKYDWNSSHV 420 (787)
Q Consensus 350 ~V~IwDl~s~~~v~~~~-----aH~~pIsaLaFSpdG~-lLATaS~dG~~IrVWdi~~~~~~---~~~g~~~~~~~~s~~ 420 (787)
.|++||+.+++.+..+. +|..+|.+++|+|+|. +|++++.|| .|+|||+...... ...|. .........
T Consensus 235 ~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg-~i~iwd~~~~~~~~~~~~~g~-~~~~~~~~~ 312 (357)
T 3i2n_A 235 KFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAG-GLHLWKYEYPIQRSKKDSEGI-EMGVAGSVS 312 (357)
T ss_dssp EEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTS-EEEEEEEECCSCC--CCTTSC-CCCCCCEEE
T ss_pred eEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCC-cEEEeecCCCcccccccCCCC-ccccccccc
Confidence 99999998776554444 9999999999999999 899999976 5999998642100 00000 000001123
Q ss_pred EEEEEecccccccEEEEEEccCCCEEE-EEeCCCeEEEEeCCCC
Q 003907 421 HLYKLHRGITSATIQDICFSHYSQWIA-IVSSKGTCHVFVLSPF 463 (787)
Q Consensus 421 ~l~~l~rG~~~a~I~slaFSpDg~~LA-s~S~dgTVhIwdl~~~ 463 (787)
.+..+. + +...|.+++|+|||++|+ +++.|++|+||++...
T Consensus 313 ~~~~~~-~-~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~~ 354 (357)
T 3i2n_A 313 LLQNVT-L-STQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTKL 354 (357)
T ss_dssp EEEEEE-C-CSSCEEEEEECSSSTTEEEEEETTSEEEEEEECC-
T ss_pred eeeccc-c-CCCCeeEEEEcCCCCeEEEEecCCCcEEEEECCCc
Confidence 455554 3 345799999999999998 7999999999999754
No 52
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=99.87 E-value=1.5e-19 Score=200.14 Aligned_cols=276 Identities=15% Similarity=0.127 Sum_probs=196.1
Q ss_pred CCCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCceeEeeeeccCcEEEEEEecCCCCCCCCCCccccC
Q 003907 52 SEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLH 130 (787)
Q Consensus 52 ~~~~~~~v~wa~Fd~l~~~~~~~~~vL~lG~~~G-~qVWdv~~~~~~~ells~~dg~V~~v~~lP~P~~~~~~d~F~~sr 130 (787)
..+|.+.|..+.|+ +..|++|..+| ++|||++. ++....+..|.++|.++.+.+ .
T Consensus 155 ~~~h~~~v~~~~~~---------~~~l~s~~~dg~i~vwd~~~-~~~~~~~~~h~~~v~~~~~~~-------------~- 210 (445)
T 2ovr_B 155 LVGHTGGVWSSQMR---------DNIIISGSTDRTLKVWNAET-GECIHTLYGHTSTVRCMHLHE-------------K- 210 (445)
T ss_dssp CCCCSSCEEEEEEE---------TTEEEEEETTSCEEEEETTT-TEEEEEECCCSSCEEEEEEET-------------T-
T ss_pred EcCCCCCEEEEEec---------CCEEEEEeCCCeEEEEECCc-CcEEEEECCCCCcEEEEEecC-------------C-
Confidence 44577788888886 23677777766 99999964 667777888999999998752 2
Q ss_pred cEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCC-CcEEEEEecCCeEEEEe
Q 003907 131 PFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFR-SSVCMVRCSPRIVAVGL 209 (787)
Q Consensus 131 pLLavV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~v~tL~f~-s~V~sV~~s~~~LaV~~ 209 (787)
+|++.+. +++|++||+.+++.+.++..+ ..|.++.++.+.|+++.
T Consensus 211 -~l~s~s~---------------------------------dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~ 256 (445)
T 2ovr_B 211 -RVVSGSR---------------------------------DATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGA 256 (445)
T ss_dssp -EEEEEET---------------------------------TSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEEEEE
T ss_pred -EEEEEeC---------------------------------CCEEEEEECCCCcEEEEEcCCcccEEEEEECCCEEEEEc
Confidence 5544221 268999999999999999755 68999999888888766
Q ss_pred -CCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCcceeccccCCCCCcCCCcCC
Q 003907 210 -ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSP 288 (787)
Q Consensus 210 -~~~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~~~~~lAlspr~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~sp 288 (787)
++.|++||+.+++.+.++..|..+ ...+++..++|+.++.+..+ ..|+..+.
T Consensus 257 ~dg~i~iwd~~~~~~~~~~~~~~~~-------------v~~~~~~~~~l~~~~~d~~i-----~i~d~~~~--------- 309 (445)
T 2ovr_B 257 YDFMVKVWDPETETCLHTLQGHTNR-------------VYSLQFDGIHVVSGSLDTSI-----RVWDVETG--------- 309 (445)
T ss_dssp TTSCEEEEEGGGTEEEEEECCCSSC-------------EEEEEECSSEEEEEETTSCE-----EEEETTTC---------
T ss_pred CCCEEEEEECCCCcEeEEecCCCCc-------------eEEEEECCCEEEEEeCCCeE-----EEEECCCC---------
Confidence 567999999999988888766543 24566666888887654211 12332111
Q ss_pred CCCceeEeeehhhhhhhhcccceeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECCCCcEEEEecc-
Q 003907 289 GGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKA- 367 (787)
Q Consensus 289 ~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~v~~~~a- 367 (787)
..+ +++..+. .......+ .+..++.+..||.|++||+.+++.+..+..
T Consensus 310 ---~~~----------------~~~~~~~------~~v~~~~~------~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~ 358 (445)
T 2ovr_B 310 ---NCI----------------HTLTGHQ------SLTSGMEL------KDNILVSGNADSTVKIWDIKTGQCLQTLQGP 358 (445)
T ss_dssp ---CEE----------------EEECCCC------SCEEEEEE------ETTEEEEEETTSCEEEEETTTCCEEEEECST
T ss_pred ---CEE----------------EEEcCCc------ccEEEEEE------eCCEEEEEeCCCeEEEEECCCCcEEEEEccC
Confidence 100 0111000 00000001 111245677899999999999999999986
Q ss_pred --CCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEe---cccccccEEEEEEccC
Q 003907 368 --HTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLH---RGITSATIQDICFSHY 442 (787)
Q Consensus 368 --H~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~---rG~~~a~I~slaFSpD 442 (787)
|..+|.+++|+ +++|++++.|| .|+|||+.. + ..+..+. .+.+...|++++|+||
T Consensus 359 ~~~~~~v~~~~~~--~~~l~s~~~dg-~v~iwd~~~-------~----------~~~~~~~~~~~~~~~~~v~~~~~s~~ 418 (445)
T 2ovr_B 359 NKHQSAVTCLQFN--KNFVITSSDDG-TVKLWDLKT-------G----------EFIRNLVTLESGGSGGVVWRIRASNT 418 (445)
T ss_dssp TSCSSCEEEEEEC--SSEEEEEETTS-EEEEEETTT-------C----------CEEEEEEECTTGGGTCEEEEEEECSS
T ss_pred CCCCCCEEEEEEC--CCEEEEEeCCC-eEEEEECCC-------C----------ceeeeeeccccCCCCceEEEEEecCC
Confidence 88999999996 68999999976 499999864 3 3455542 2334567999999999
Q ss_pred CCEEEEEeCCCe----EEEEeCCCC
Q 003907 443 SQWIAIVSSKGT----CHVFVLSPF 463 (787)
Q Consensus 443 g~~LAs~S~dgT----VhIwdl~~~ 463 (787)
+.+||+++.||+ ++|||++..
T Consensus 419 ~~~la~~~~dg~~~~~l~v~df~~~ 443 (445)
T 2ovr_B 419 KLVCAVGSRNGTEETKLLVLDFDVD 443 (445)
T ss_dssp EEEEEEECSSSSSCCEEEEEECCCC
T ss_pred EEEEEEcccCCCCccEEEEEECCCC
Confidence 999999999998 999999753
No 53
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=99.87 E-value=4.6e-21 Score=209.40 Aligned_cols=260 Identities=16% Similarity=0.153 Sum_probs=170.7
Q ss_pred EEEEccCCCceeEeeeeccCcEEEEEEecCCCCCCCCCCccccCcEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCC
Q 003907 87 QVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSG 166 (787)
Q Consensus 87 qVWdv~~~~~~~ells~~dg~V~~v~~lP~P~~~~~~d~F~~srpLLavV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~ 166 (787)
.+|+... ..+...+..|.++|.++++.|+. .+|+..+.
T Consensus 49 ~~~~~~~-~~~~~~l~gH~~~V~~~~~sp~~-------------~~l~s~s~---------------------------- 86 (380)
T 3iz6_a 49 VSFNPTD-LVCCRTLQGHSGKVYSLDWTPEK-------------NWIVSASQ---------------------------- 86 (380)
T ss_dssp CCCCCCC-CEEEEEECCCSSCEEEEEECTTS-------------SCEEEEET----------------------------
T ss_pred cccccce-eEEeecccccccEEEEEEEcCCC-------------CEEEEEeC----------------------------
Confidence 3455532 44567788999999999999752 25654221
Q ss_pred CCCCCCCEEEEEECCCCeEEEEEeCC-CcEEEEEecC--CeEEEEe-CCeEEEEECCCCce-------eEEEEecCCccc
Q 003907 167 NCVNSPTAVRFYSFQSHCYEHVLRFR-SSVCMVRCSP--RIVAVGL-ATQIYCFDALTLEN-------KFSVLTYPVPQL 235 (787)
Q Consensus 167 ~~~~~p~tVrlWdlktg~~v~tL~f~-s~V~sV~~s~--~~LaV~~-~~~I~iwD~~T~e~-------l~tl~t~p~p~~ 235 (787)
+++|+|||+.+++.+++++.+ ..|.++++++ ++||++. +..|++||+.+... ...+.+|...
T Consensus 87 -----D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~-- 159 (380)
T 3iz6_a 87 -----DGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGY-- 159 (380)
T ss_dssp -----TSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSC--
T ss_pred -----CCeEEEEECCCCccceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEEEECCCCccccCCccceeeccCCCcc--
Confidence 369999999999999999876 4799999988 6777754 66799999876431 1222223221
Q ss_pred CCCCccccccccceeEEcc---ceEEEecCCceecCcceeccccCCCCCcCCCcCCCCCceeEeeehhhhhhhhccccee
Q 003907 236 AGQGAVGINVGYGPMAVGP---RWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKT 312 (787)
Q Consensus 236 ~~~~~~~~~~~~~~lAlsp---r~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~sp~~g~lva~~a~d~sk~la~G~~kt 312 (787)
...+++.| ..|+.++.+.. ...|+..++.. +. .
T Consensus 160 -----------v~~~~~~~~~~~~l~s~s~D~~-----i~~wd~~~~~~------------~~----------------~ 195 (380)
T 3iz6_a 160 -----------ASSCQYVPDQETRLITGSGDQT-----CVLWDVTTGQR------------IS----------------I 195 (380)
T ss_dssp -----------CCCCBCCSSSSSCEEEECTTSC-----EEEECTTTCCE------------EE----------------E
T ss_pred -----------eEEEEEecCCCCEEEEECCCCc-----EEEEEcCCCcE------------EE----------------E
Confidence 22344554 45777665421 12244322110 00 0
Q ss_pred ecccccccCCCCC---CCCcccCCccccccccccccCCCceEEEEECC-CCcEEEEeccCCCCeEEEEECCCCCEEEEEE
Q 003907 313 LSKYCQELLPDGS---SSPVSPNSVWKVGRHAGADMDNAGIVVVKDFV-TRAIISQFKAHTSPISALCFDPSGTLLVTAS 388 (787)
Q Consensus 313 ls~~~~~l~p~~s---~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~-s~~~v~~~~aH~~pIsaLaFSpdG~lLATaS 388 (787)
+.. ..+.+. ...+.+++ .....+++++.||+|+|||+. ..+.+..+.+|..+|.+++|+|+|++|||+|
T Consensus 196 ~~~----~~~~~h~~~v~~~~~~~---~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s 268 (380)
T 3iz6_a 196 FGS----EFPSGHTADVLSLSINS---LNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGS 268 (380)
T ss_dssp ECC----CSSSSCCSCEEEEEECS---SSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEEC
T ss_pred eec----ccCCCCccCeEEEEeec---CCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEc
Confidence 000 000000 01111111 011234578899999999997 4578889999999999999999999999999
Q ss_pred cCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccc-----cccEEEEEEccCCCEEEEEeCCCeEEEEeCCCC
Q 003907 389 VYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGIT-----SATIQDICFSHYSQWIAIVSSKGTCHVFVLSPF 463 (787)
Q Consensus 389 ~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~-----~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~~~ 463 (787)
.||+ |+|||+.. + ..+..+..... ...|.+++|+|||++|++++.||+|+|||+...
T Consensus 269 ~D~~-i~lwd~~~-------~----------~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~ 330 (380)
T 3iz6_a 269 DDGT-CRLFDMRT-------G----------HQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLA 330 (380)
T ss_dssp SSSC-EEEEETTT-------T----------EEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTC
T ss_pred CCCe-EEEEECCC-------C----------cEEEEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCC
Confidence 9776 99999964 2 34444432211 124889999999999999999999999998754
Q ss_pred C
Q 003907 464 G 464 (787)
Q Consensus 464 g 464 (787)
.
T Consensus 331 ~ 331 (380)
T 3iz6_a 331 E 331 (380)
T ss_dssp C
T ss_pred c
Confidence 3
No 54
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=99.87 E-value=9.5e-21 Score=208.35 Aligned_cols=252 Identities=13% Similarity=0.191 Sum_probs=175.4
Q ss_pred CCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccC---CCceeEeee-eccCcEEEEEEecCCCCCCCCCCcc
Q 003907 53 EDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVED---ASNFNELVS-KRDGPVSFLQMQPFPVKDDGCEGFR 127 (787)
Q Consensus 53 ~~~~~~v~wa~Fd~l~~~~~~~~~vL~lG~~~G-~qVWdv~~---~~~~~ells-~~dg~V~~v~~lP~P~~~~~~d~F~ 127 (787)
+.|.+.|..+.|.. .+++.|++|..+| ++|||+.. .......+. .|.++|.+|++.|+.
T Consensus 60 ~~h~~~V~~~~~s~------~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~---------- 123 (437)
T 3gre_A 60 ENEPNSITSSAVSP------GETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTYDCSSTVTQITMIPNF---------- 123 (437)
T ss_dssp TTTTSCEEEEEEEC------SSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEEECSSCEEEEEECTTS----------
T ss_pred cCCCCceEEEEECC------CCCCEEEEecCCceEEEeECcccccCcccceeeeccCCCCEEEEEEeCCC----------
Confidence 67889999999973 1356888888877 89999965 221222222 588999999998642
Q ss_pred ccCcEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECC---CCeEEEEEeC-------------
Q 003907 128 KLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQ---SHCYEHVLRF------------- 191 (787)
Q Consensus 128 ~srpLLavV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlk---tg~~v~tL~f------------- 191 (787)
.+|++.+. +++|++||+. +++.+..+..
T Consensus 124 ---~~l~s~s~---------------------------------dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 167 (437)
T 3gre_A 124 ---DAFAVSSK---------------------------------DGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGK 167 (437)
T ss_dssp ---SEEEEEET---------------------------------TSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSS
T ss_pred ---CEEEEEeC---------------------------------CCEEEEEEeccccCCceeeccccceeEEEEccCccc
Confidence 26655331 2689999994 6665554442
Q ss_pred CCcEEEEEe--c--CCeEEEEe-CCeEEEEECCCCceeEEEEe--cCCcccCCCCccccccccceeEEcc--ceEEEecC
Q 003907 192 RSSVCMVRC--S--PRIVAVGL-ATQIYCFDALTLENKFSVLT--YPVPQLAGQGAVGINVGYGPMAVGP--RWLAYASN 262 (787)
Q Consensus 192 ~s~V~sV~~--s--~~~LaV~~-~~~I~iwD~~T~e~l~tl~t--~p~p~~~~~~~~~~~~~~~~lAlsp--r~LAyas~ 262 (787)
...+.++.+ + .++|+++. ++.|++||+.+++.+.++.. |..+ ...++++| ++|
T Consensus 168 ~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~-------------v~~~~~s~~~~~l----- 229 (437)
T 3gre_A 168 NEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIENSPRHGA-------------VSSICIDEECCVL----- 229 (437)
T ss_dssp CCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEECCGGGCC-------------EEEEEECTTSCEE-----
T ss_pred ccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEccCCCCCc-------------eEEEEECCCCCEE-----
Confidence 234555542 2 35677655 56899999999999888876 2221 22334332 111
Q ss_pred CceecCcceeccccCCCCCcCCCcCCCCCceeEeeehhhhhhhhcccceeecccccccCCCCCCCCcccCCccccccccc
Q 003907 263 TLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAG 342 (787)
Q Consensus 263 ~~~l~~~g~~s~q~lt~~~~s~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~ 342 (787)
T Consensus 230 -------------------------------------------------------------------------------- 229 (437)
T 3gre_A 230 -------------------------------------------------------------------------------- 229 (437)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccCCCceEEEEECCCCcEEEEec-cCCCCeEEE----EECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCC
Q 003907 343 ADMDNAGIVVVKDFVTRAIISQFK-AHTSPISAL----CFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNS 417 (787)
Q Consensus 343 ~s~~~dG~V~IwDl~s~~~v~~~~-aH~~pIsaL----aFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~ 417 (787)
+.+..||.|+|||+.+++.+..+. .|..+|.++ +|+|+|.+|++++.|| .|+|||+...
T Consensus 230 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg-~i~iwd~~~~--------------- 293 (437)
T 3gre_A 230 ILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKT-FLTIWNFVKG--------------- 293 (437)
T ss_dssp EEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTE-EEEEEETTTT---------------
T ss_pred EEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCC-cEEEEEcCCC---------------
Confidence 134568999999999999999987 888999999 5556799999999966 5999999642
Q ss_pred cceEEEEEec-----------------------c-cccccEEEEEEccCCCEEEEEeCCCeEEEEeCCCCCCcccccccc
Q 003907 418 SHVHLYKLHR-----------------------G-ITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQTLS 473 (787)
Q Consensus 418 s~~~l~~l~r-----------------------G-~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~~~gg~~~~~~H~ 473 (787)
..+..+.. | .+...|.+++|+ ++++|++++.|++|+|||+........+..|.
T Consensus 294 --~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~ 370 (437)
T 3gre_A 294 --HCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSLNELSSSKAVISPS 370 (437)
T ss_dssp --EEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCGGGCEEEECC-
T ss_pred --cEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEecCCCCeEEEEECCCcccceEEeccc
Confidence 23333321 1 133469999999 88999999999999999998765555555553
No 55
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=99.87 E-value=4.9e-20 Score=200.59 Aligned_cols=254 Identities=13% Similarity=0.116 Sum_probs=177.1
Q ss_pred CCeEEEEEecCc-EEEEEccCCCceeEeeeeccCcEEEEEEecCCCCCCCCCCccccCcEEEEEEcCCCCCCCCCCCcCC
Q 003907 74 FKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSH 152 (787)
Q Consensus 74 ~~~vL~lG~~~G-~qVWdv~~~~~~~ells~~dg~V~~v~~lP~P~~~~~~d~F~~srpLLavV~~d~~~~~~~~~~~~~ 152 (787)
+++.|++|..+| ++|||++ .+....++..|.++|.++++.|+. .+|++.+.
T Consensus 108 ~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~h~~~v~~~~~~~~~-------------~~l~s~s~-------------- 159 (420)
T 3vl1_A 108 QMRRFILGTTEGDIKVLDSN-FNLQREIDQAHVSEITKLKFFPSG-------------EALISSSQ-------------- 159 (420)
T ss_dssp SSCEEEEEETTSCEEEECTT-SCEEEEETTSSSSCEEEEEECTTS-------------SEEEEEET--------------
T ss_pred CCCEEEEEECCCCEEEEeCC-CcceeeecccccCccEEEEECCCC-------------CEEEEEeC--------------
Confidence 356788888776 9999996 466777778899999999998742 26655331
Q ss_pred CCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeC-CCcEEEEEecC--CeEEEEe-CCeEEEEECCCCceeEEEE
Q 003907 153 LGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRF-RSSVCMVRCSP--RIVAVGL-ATQIYCFDALTLENKFSVL 228 (787)
Q Consensus 153 ~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~v~tL~f-~s~V~sV~~s~--~~LaV~~-~~~I~iwD~~T~e~l~tl~ 228 (787)
+++|++||+++++.+.+++. ...|.++++++ +.|+++. ++.|++||+.+++.+.++.
T Consensus 160 -------------------d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~ 220 (420)
T 3vl1_A 160 -------------------DMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFN 220 (420)
T ss_dssp -------------------TSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEEC
T ss_pred -------------------CCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEEee
Confidence 26899999999999999985 46899999987 5677655 5679999999999888887
Q ss_pred ecCCcccCCCCccccccccceeEEccceEEEecCCceecCcceeccccCCCCCcCCCcCCCCCceeEeeehhhhhhhhcc
Q 003907 229 TYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAG 308 (787)
Q Consensus 229 t~p~p~~~~~~~~~~~~~~~~lAlspr~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~sp~~g~lva~~a~d~sk~la~G 308 (787)
.+..+. .....+++. ++....+. ....
T Consensus 221 ~~~~~~----------~~v~~~~~~------~~~~~~~~-------~~~~------------------------------ 247 (420)
T 3vl1_A 221 RKENPH----------DGVNSIALF------VGTDRQLH-------EIST------------------------------ 247 (420)
T ss_dssp BTTBTT----------CCEEEEEEE------ECCCSSCG-------GGCC------------------------------
T ss_pred cCCCCC----------CCccEEEEe------cCCcceee-------eccc------------------------------
Confidence 643320 011223321 11110000 0000
Q ss_pred cceeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECCCCcEEEEec-cCCCCeEEEEECCCCC-EEEE
Q 003907 309 LSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFK-AHTSPISALCFDPSGT-LLVT 386 (787)
Q Consensus 309 ~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~v~~~~-aH~~pIsaLaFSpdG~-lLAT 386 (787)
.....+.++++.+ .++.+..+|.|+|||+.+++.+..+. .|..+|.+++|+|+|. +|++
T Consensus 248 ---------------~~v~~~~~s~~~~----~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~ 308 (420)
T 3vl1_A 248 ---------------SKKNNLEFGTYGK----YVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYA 308 (420)
T ss_dssp ---------------CCCCTTCSSCTTE----EEEEEETTSCEEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEE
T ss_pred ---------------CcccceEEcCCCC----EEEEEcCCCeEEEEECCCCceeEEcccccCCCceeEEEeCCCCCEEEE
Confidence 0011122222222 23456789999999999998777775 5899999999999999 9999
Q ss_pred EEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEeCCCCCC
Q 003907 387 ASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGG 465 (787)
Q Consensus 387 aS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~~~gg 465 (787)
++.||. |+|||+.. +. ..+..+. +++...|.++.| +|+++|++++.|++|+||++.....
T Consensus 309 g~~dg~-i~vwd~~~-------~~---------~~~~~~~-~~~~~~v~~~~~-~~~~~l~s~~~d~~v~iw~~~~~~~ 368 (420)
T 3vl1_A 309 GYENGM-LAQWDLRS-------PE---------CPVGEFL-INEGTPINNVYF-AAGALFVSSGFDTSIKLDIISDPES 368 (420)
T ss_dssp EETTSE-EEEEETTC-------TT---------SCSEEEE-ESTTSCEEEEEE-ETTEEEEEETTTEEEEEEEECCTTC
T ss_pred EeCCCe-EEEEEcCC-------Cc---------Cchhhhh-ccCCCCceEEEe-CCCCEEEEecCCccEEEEeccCCCC
Confidence 999764 99999964 10 1234443 334456888854 5889999999999999999987433
No 56
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.87 E-value=7.5e-20 Score=202.58 Aligned_cols=231 Identities=16% Similarity=0.227 Sum_probs=174.2
Q ss_pred CCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCceeEeeeeccCcEEEEEEecCCCCCCCCCCccccCc
Q 003907 53 EDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHP 131 (787)
Q Consensus 53 ~~~~~~v~wa~Fd~l~~~~~~~~~vL~lG~~~G-~qVWdv~~~~~~~ells~~dg~V~~v~~lP~P~~~~~~d~F~~srp 131 (787)
.++.+.|....|| ++.|++|..+| ++|||++ .++....+..|.++|.++.+. ++
T Consensus 130 ~~~~~~v~~~~~d---------~~~l~~g~~dg~i~iwd~~-~~~~~~~~~~h~~~v~~l~~~-------------~~-- 184 (435)
T 1p22_A 130 SETSKGVYCLQYD---------DQKIVSGLRDNTIKIWDKN-TLECKRILTGHTGSVLCLQYD-------------ER-- 184 (435)
T ss_dssp CSSCCCEEEEECC---------SSEEEEEESSSCEEEEESS-SCCEEEEECCCSSCEEEEECC-------------SS--
T ss_pred cCCCCcEEEEEEC---------CCEEEEEeCCCeEEEEeCC-CCeEEEEEcCCCCcEEEEEEC-------------CC--
Confidence 4566779888885 35677777766 9999995 467778888999999998862 22
Q ss_pred EEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCC-CcEEEEEecCCeEEEEe-
Q 003907 132 FLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFR-SSVCMVRCSPRIVAVGL- 209 (787)
Q Consensus 132 LLavV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~v~tL~f~-s~V~sV~~s~~~LaV~~- 209 (787)
+|++.+. +++|++||+++++.+.++..+ ..|.+++++++.|+++.
T Consensus 185 ~l~sg~~---------------------------------dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~ 231 (435)
T 1p22_A 185 VIITGSS---------------------------------DSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSK 231 (435)
T ss_dssp EEEEEET---------------------------------TSCEEEEESSSCCEEEEECCCCSCEEEEECCTTEEEEEET
T ss_pred EEEEEcC---------------------------------CCeEEEEECCCCcEEEEEcCCCCcEEEEEEcCCEEEEeeC
Confidence 6654221 258999999999999999755 58999999998888866
Q ss_pred CCeEEEEECCCCceeE---EEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCcceeccccCCCCCcCCCc
Q 003907 210 ATQIYCFDALTLENKF---SVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPST 286 (787)
Q Consensus 210 ~~~I~iwD~~T~e~l~---tl~t~p~p~~~~~~~~~~~~~~~~lAlspr~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~ 286 (787)
++.|++||+.+++... .+..|..+ ...+++..++
T Consensus 232 dg~i~vwd~~~~~~~~~~~~~~~~~~~-------------v~~~~~~~~~------------------------------ 268 (435)
T 1p22_A 232 DRSIAVWDMASPTDITLRRVLVGHRAA-------------VNVVDFDDKY------------------------------ 268 (435)
T ss_dssp TSCEEEEECSSSSCCEEEEEECCCSSC-------------EEEEEEETTE------------------------------
T ss_pred CCcEEEEeCCCCCCceeeeEecCCCCc-------------EEEEEeCCCE------------------------------
Confidence 5679999998877542 22222221 1111111111
Q ss_pred CCCCCceeEeeehhhhhhhhcccceeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECCCCcEEEEec
Q 003907 287 SPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFK 366 (787)
Q Consensus 287 sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~v~~~~ 366 (787)
++.+..||.|++||+.+++.+..+.
T Consensus 269 -------------------------------------------------------l~s~~~dg~i~vwd~~~~~~~~~~~ 293 (435)
T 1p22_A 269 -------------------------------------------------------IVSASGDRTIKVWNTSTCEFVRTLN 293 (435)
T ss_dssp -------------------------------------------------------EEEEETTSEEEEEETTTCCEEEEEE
T ss_pred -------------------------------------------------------EEEEeCCCeEEEEECCcCcEEEEEc
Confidence 1234568999999999999999999
Q ss_pred cCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEE
Q 003907 367 AHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWI 446 (787)
Q Consensus 367 aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~L 446 (787)
+|..+|.+++| ++.+|++++.||+ |+|||+.. + ..+..+. + +...|.+++| |+++|
T Consensus 294 ~~~~~v~~~~~--~~~~l~~g~~dg~-i~iwd~~~-------~----------~~~~~~~-~-h~~~v~~~~~--~~~~l 349 (435)
T 1p22_A 294 GHKRGIACLQY--RDRLVVSGSSDNT-IRLWDIEC-------G----------ACLRVLE-G-HEELVRCIRF--DNKRI 349 (435)
T ss_dssp CCSSCEEEEEE--ETTEEEEEETTSC-EEEEETTT-------C----------CEEEEEC-C-CSSCEEEEEC--CSSEE
T ss_pred CCCCcEEEEEe--CCCEEEEEeCCCe-EEEEECCC-------C----------CEEEEEe-C-CcCcEEEEEe--cCCEE
Confidence 99999999999 5789999999776 99999964 3 4566664 3 3457999999 89999
Q ss_pred EEEeCCCeEEEEeCCCC
Q 003907 447 AIVSSKGTCHVFVLSPF 463 (787)
Q Consensus 447 As~S~dgTVhIwdl~~~ 463 (787)
++++.||+|+|||+...
T Consensus 350 ~sg~~dg~i~vwd~~~~ 366 (435)
T 1p22_A 350 VSGAYDGKIKVWDLVAA 366 (435)
T ss_dssp EEEETTSCEEEEEHHHH
T ss_pred EEEeCCCcEEEEECCCC
Confidence 99999999999998643
No 57
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=99.87 E-value=2e-19 Score=199.41 Aligned_cols=258 Identities=16% Similarity=0.191 Sum_probs=176.3
Q ss_pred CCCCCCc-EEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCceeEeeeeccCcEEEEEEecCCCCCCCCCCcccc
Q 003907 52 SEDLKDQ-VTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKL 129 (787)
Q Consensus 52 ~~~~~~~-v~wa~Fd~l~~~~~~~~~vL~lG~~~G-~qVWdv~~~~~~~ells~~dg~V~~v~~lP~P~~~~~~d~F~~s 129 (787)
..+|.+. +.++.|| +..|++|+.+| ++|||+.. ++....+..|.++|.++++.|+ .
T Consensus 117 l~~h~~~v~~~~~~~---------~~~l~sgs~dg~i~vwd~~~-~~~~~~~~~h~~~V~~l~~~~~------------~ 174 (464)
T 3v7d_B 117 LRGHMTSVITCLQFE---------DNYVITGADDKMIRVYDSIN-KKFLLQLSGHDGGVWALKYAHG------------G 174 (464)
T ss_dssp EECCSSSCEEEEEEE---------TTEEEEEETTSCEEEEETTT-TEEEEEECCCSSCEEEEEECST------------T
T ss_pred EcCCCCCcEEEEEEC---------CCEEEEEcCCCcEEEEECCC-CcEEEEEeCCCcCEEEEEEcCC------------C
Confidence 3456666 4677775 24788877776 99999954 6677778899999999998753 1
Q ss_pred CcEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeC-CCcEEEEEecC----Ce
Q 003907 130 HPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRF-RSSVCMVRCSP----RI 204 (787)
Q Consensus 130 rpLLavV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~v~tL~f-~s~V~sV~~s~----~~ 204 (787)
+|++.+. +++|++||+++++.+.++.. .+.|.++++++ ++
T Consensus 175 --~l~s~s~---------------------------------dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~ 219 (464)
T 3v7d_B 175 --ILVSGST---------------------------------DRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKY 219 (464)
T ss_dssp --EEEEEET---------------------------------TSCEEEEETTTTEEEEEECCCSSCEEEEEEEESSSCEE
T ss_pred --EEEEEeC---------------------------------CCCEEEEECCCCcEEEEECCCCCccEEEEEecCCCCCE
Confidence 5544221 25899999999999999984 56999999873 56
Q ss_pred EEEEe-CCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCcceeccccCCCCCcC
Q 003907 205 VAVGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVS 283 (787)
Q Consensus 205 LaV~~-~~~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~~~~~lAlspr~LAyas~~~~l~~~g~~s~q~lt~~~~s 283 (787)
|+++. ++.|++||+.+.+.......... ...+...| ...+.+
T Consensus 220 l~s~s~d~~i~vwd~~~~~~~~~~~~~~~--------------~~~~~~~~------~~~~~~----------------- 262 (464)
T 3v7d_B 220 IVTGSRDNTLHVWKLPKESSVPDHGEEHD--------------YPLVFHTP------EENPYF----------------- 262 (464)
T ss_dssp EEEEETTSCEEEEECCCCCCC------CC--------------SSEEESCG------GGCTTE-----------------
T ss_pred EEEEcCCCcEEEeeCCCCcccccccccCC--------------cceEeecc------CCCeEE-----------------
Confidence 66655 56899999998765443321111 00011100 000000
Q ss_pred CCcCCCCCceeEeeehhhhhhhhcccceeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECCCCcEEE
Q 003907 284 PSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIIS 363 (787)
Q Consensus 284 ~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~v~ 363 (787)
+ ..+.++.. .....+ ..+..++.+..||.|++||+.+++.+.
T Consensus 263 ----------~----------------~~~~~~~~--------~v~~~~----~~~~~l~~~~~d~~i~vwd~~~~~~~~ 304 (464)
T 3v7d_B 263 ----------V----------------GVLRGHMA--------SVRTVS----GHGNIVVSGSYDNTLIVWDVAQMKCLY 304 (464)
T ss_dssp ----------E----------------EEECCCSS--------CEEEEE----EETTEEEEEETTSCEEEEETTTTEEEE
T ss_pred ----------E----------------EEccCccc--------eEEEEc----CCCCEEEEEeCCCeEEEEECCCCcEEE
Confidence 0 00000000 000000 001123456789999999999999999
Q ss_pred EeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCC
Q 003907 364 QFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYS 443 (787)
Q Consensus 364 ~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg 443 (787)
.+.+|..+|.+++|+|+|++|++++.||+ |+|||+.. + ..+..+. + +...|.+++|+ +
T Consensus 305 ~~~~~~~~v~~~~~~~~~~~l~sg~~dg~-i~vwd~~~-------~----------~~~~~~~-~-h~~~v~~~~~~--~ 362 (464)
T 3v7d_B 305 ILSGHTDRIYSTIYDHERKRCISASMDTT-IRIWDLEN-------G----------ELMYTLQ-G-HTALVGLLRLS--D 362 (464)
T ss_dssp EECCCSSCEEEEEEETTTTEEEEEETTSC-EEEEETTT-------T----------EEEEEEC-C-CSSCEEEEEEC--S
T ss_pred EecCCCCCEEEEEEcCCCCEEEEEeCCCc-EEEEECCC-------C----------cEEEEEe-C-CCCcEEEEEEc--C
Confidence 99999999999999999999999999776 99999854 3 4666664 3 34579999998 5
Q ss_pred CEEEEEeCCCeEEEEeCCCC
Q 003907 444 QWIAIVSSKGTCHVFVLSPF 463 (787)
Q Consensus 444 ~~LAs~S~dgTVhIwdl~~~ 463 (787)
++|++++.||+|++||+...
T Consensus 363 ~~l~s~s~dg~v~vwd~~~~ 382 (464)
T 3v7d_B 363 KFLVSAAADGSIRGWDANDY 382 (464)
T ss_dssp SEEEEEETTSEEEEEETTTC
T ss_pred CEEEEEeCCCcEEEEECCCC
Confidence 89999999999999999864
No 58
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=99.87 E-value=2e-21 Score=210.60 Aligned_cols=263 Identities=12% Similarity=0.068 Sum_probs=173.6
Q ss_pred CCCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCC------ceeEe--eeeccCcEEEEEEecCCCCCCC
Q 003907 52 SEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDAS------NFNEL--VSKRDGPVSFLQMQPFPVKDDG 122 (787)
Q Consensus 52 ~~~~~~~v~wa~Fd~l~~~~~~~~~vL~lG~~~G-~qVWdv~~~~------~~~el--ls~~dg~V~~v~~lP~P~~~~~ 122 (787)
...|++.|..+.|.. + .+++|++|..+| ++|||+.... ....+ +..|.++|..+.+.|+.
T Consensus 109 ~~~h~~~v~~~~~~~----~--~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~----- 177 (416)
T 2pm9_A 109 FSNHSSSVKTVKFNA----K--QDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSL----- 177 (416)
T ss_dssp CCCSSSCCCEEEECS----S--STTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSC-----
T ss_pred ccCCccceEEEEEcC----C--CCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCeeEEEeCCCC-----
Confidence 345667777777753 1 256788887766 9999997643 22222 35677899999998741
Q ss_pred CCCccccCcEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeC-------CCcE
Q 003907 123 CEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRF-------RSSV 195 (787)
Q Consensus 123 ~d~F~~srpLLavV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~v~tL~f-------~s~V 195 (787)
..+|++ ++. +++|++||+++++.+.++.. ...|
T Consensus 178 -------~~~l~~-~~~--------------------------------dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v 217 (416)
T 2pm9_A 178 -------AHVFAS-AGS--------------------------------SNFASIWDLKAKKEVIHLSYTSPNSGIKQQL 217 (416)
T ss_dssp -------TTEEEE-ESS--------------------------------SSCEEEEETTTTEEEEEECCCCCSSCCCCCE
T ss_pred -------CcEEEE-EcC--------------------------------CCCEEEEECCCCCcceEEeccccccccCCce
Confidence 125544 221 25899999999999999987 4689
Q ss_pred EEEEecC---CeEEEEeCC----eEEEEECCCCc-eeEEEE-ecCCcccCCCCccccccccceeEEccceEEEecCCcee
Q 003907 196 CMVRCSP---RIVAVGLAT----QIYCFDALTLE-NKFSVL-TYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLL 266 (787)
Q Consensus 196 ~sV~~s~---~~LaV~~~~----~I~iwD~~T~e-~l~tl~-t~p~p~~~~~~~~~~~~~~~~lAlspr~LAyas~~~~l 266 (787)
.++++++ ++|+++..+ .|++||+.+++ .+..+. .|..+ ...++++| .+
T Consensus 218 ~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~-------------v~~~~~s~-------~~--- 274 (416)
T 2pm9_A 218 SVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKG-------------ILSLDWCH-------QD--- 274 (416)
T ss_dssp EEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSC-------------EEEEEECS-------SC---
T ss_pred EEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCc-------------eeEEEeCC-------CC---
Confidence 9999997 367777655 89999999863 333333 22221 12222221 00
Q ss_pred cCcceeccccCCCCCcCCCcCCCCCceeEeeehhhhhhhhcccceeecccccccCCCCCCCCcccCCccccccccccccC
Q 003907 267 SNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMD 346 (787)
Q Consensus 267 ~~~g~~s~q~lt~~~~s~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~ 346 (787)
+. .++.+.
T Consensus 275 ------------------------~~------------------------------------------------~l~s~~ 282 (416)
T 2pm9_A 275 ------------------------EH------------------------------------------------LLLSSG 282 (416)
T ss_dssp ------------------------SS------------------------------------------------CEEEEE
T ss_pred ------------------------CC------------------------------------------------eEEEEe
Confidence 00 012345
Q ss_pred CCceEEEEECCCCcEEEEeccCCCCeEEEEECCCC-CEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEE-
Q 003907 347 NAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSG-TLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYK- 424 (787)
Q Consensus 347 ~dG~V~IwDl~s~~~v~~~~aH~~pIsaLaFSpdG-~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~- 424 (787)
.||.|+|||+.+++.+..+.+|..+|.+++|+|+| .+|++++.|| .|+|||+......................++.
T Consensus 283 ~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (416)
T 2pm9_A 283 RDNTVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLFACASFDN-KIEVQTLQNLTNTLDEQETETKQQESETDFWNN 361 (416)
T ss_dssp SSSEEEEECSSSCCEEEEEECSSSCCCCEEECTTCTTEEEECCSSS-EEEEEESCCCCCSSCC-----------------
T ss_pred CCCCEEEeeCCCCccceeecCCCCceEEEEECCCCCCEEEEEecCC-cEEEEEccCCCCCcccccccccccCCccccccc
Confidence 68999999999999999999999999999999999 8999999966 59999996421000000000000000000000
Q ss_pred ----------------EecccccccEEEEEEccCCCEEEEEeCCCeEEEEeCCC
Q 003907 425 ----------------LHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSP 462 (787)
Q Consensus 425 ----------------l~rG~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~~ 462 (787)
.... +...+.+++|||||++||+++.|++|+||++.+
T Consensus 362 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~s~dg~~la~~~~d~~v~~w~~~~ 414 (416)
T 2pm9_A 362 VSREESKEKPSVFHLQAPTW-YGEPSPAAHWAFGGKLVQITPDGKGVSITNPKI 414 (416)
T ss_dssp -----CCSCCCSSCCCCCST-TCCCSCCCEEETTTEEECBCTTSSCBCCBCCCC
T ss_pred ccccccccccccccccCCcc-ccCCccceEEeeCCeEEEEeCCCCeEEEEEecc
Confidence 0000 223577899999999999999999999999975
No 59
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=99.87 E-value=7.7e-20 Score=215.28 Aligned_cols=240 Identities=16% Similarity=0.184 Sum_probs=171.6
Q ss_pred CCCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCceeEeeeeccCcEEEEEEecCCCCCCCCCCccccC
Q 003907 52 SEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLH 130 (787)
Q Consensus 52 ~~~~~~~v~wa~Fd~l~~~~~~~~~vL~lG~~~G-~qVWdv~~~~~~~ells~~dg~V~~v~~lP~P~~~~~~d~F~~sr 130 (787)
..+|.+.|..+.|.. +++.|++|..+| ++|||+.. +.....+..|.++|.++.+.|+.
T Consensus 426 ~~~h~~~v~~v~~s~-------~g~~l~sgs~Dg~v~vwd~~~-~~~~~~~~~h~~~v~~~~~s~~~------------- 484 (694)
T 3dm0_A 426 LTGHSHFVEDVVLSS-------DGQFALSGSWDGELRLWDLAA-GVSTRRFVGHTKDVLSVAFSLDN------------- 484 (694)
T ss_dssp EECCSSCEEEEEECT-------TSSEEEEEETTSEEEEEETTT-TEEEEEEECCSSCEEEEEECTTS-------------
T ss_pred ecCCCCcEEEEEECC-------CCCEEEEEeCCCcEEEEECCC-CcceeEEeCCCCCEEEEEEeCCC-------------
Confidence 356788888888863 467888888876 99999954 66667788899999999998742
Q ss_pred cEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEe----CCCcEEEEEecCC---
Q 003907 131 PFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLR----FRSSVCMVRCSPR--- 203 (787)
Q Consensus 131 pLLavV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~v~tL~----f~s~V~sV~~s~~--- 203 (787)
.+|+..+. +++|++||+.......... +...|.+++++++
T Consensus 485 ~~l~s~s~---------------------------------D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 531 (694)
T 3dm0_A 485 RQIVSASR---------------------------------DRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQ 531 (694)
T ss_dssp SCEEEEET---------------------------------TSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSSS
T ss_pred CEEEEEeC---------------------------------CCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCCc
Confidence 25554321 2689999987654433322 3357999999873
Q ss_pred -eEEEE-eCCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEcc--ceEEEecCCceecCcceeccccCCC
Q 003907 204 -IVAVG-LATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP--RWLAYASNTLLLSNSGRLSPQNLTP 279 (787)
Q Consensus 204 -~LaV~-~~~~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~~~~~lAlsp--r~LAyas~~~~l~~~g~~s~q~lt~ 279 (787)
.|+++ .++.|++||+.+.++..++..|..+ ...++++| ++|
T Consensus 532 ~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~-------------v~~v~~spdg~~l---------------------- 576 (694)
T 3dm0_A 532 PTIVSASWDKTVKVWNLSNCKLRSTLAGHTGY-------------VSTVAVSPDGSLC---------------------- 576 (694)
T ss_dssp CEEEEEETTSCEEEEETTTCCEEEEECCCSSC-------------EEEEEECTTSSEE----------------------
T ss_pred ceEEEEeCCCeEEEEECCCCcEEEEEcCCCCC-------------EEEEEEeCCCCEE----------------------
Confidence 46655 4678999999999888887766542 23344433 111
Q ss_pred CCcCCCcCCCCCceeEeeehhhhhhhhcccceeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECCCC
Q 003907 280 SGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTR 359 (787)
Q Consensus 280 ~~~s~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~ 359 (787)
++++.||.|+|||+.++
T Consensus 577 ---------------------------------------------------------------~sg~~Dg~i~iwd~~~~ 593 (694)
T 3dm0_A 577 ---------------------------------------------------------------ASGGKDGVVLLWDLAEG 593 (694)
T ss_dssp ---------------------------------------------------------------EEEETTSBCEEEETTTT
T ss_pred ---------------------------------------------------------------EEEeCCCeEEEEECCCC
Confidence 23456899999999999
Q ss_pred cEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEec------------
Q 003907 360 AIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHR------------ 427 (787)
Q Consensus 360 ~~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~r------------ 427 (787)
+.+..+..| ..|.+++|+|++.+|++++. + .|+|||+... ..+.++..
T Consensus 594 ~~~~~~~~~-~~v~~~~~sp~~~~l~~~~~-~-~i~iwd~~~~-----------------~~~~~~~~~~~~~~~~~~~~ 653 (694)
T 3dm0_A 594 KKLYSLEAN-SVIHALCFSPNRYWLCAATE-H-GIKIWDLESK-----------------SIVEDLKVDLKAEAEKADNS 653 (694)
T ss_dssp EEEECCBCS-SCEEEEEECSSSSEEEEEET-T-EEEEEETTTT-----------------EEEEEECCCCC---------
T ss_pred ceEEEecCC-CcEEEEEEcCCCcEEEEEcC-C-CEEEEECCCC-----------------CChhhhcccccccccccccc
Confidence 988888655 68999999999999988875 4 3999999642 12222210
Q ss_pred cc-----ccccEEEEEEccCCCEEEEEeCCCeEEEEeCCCC
Q 003907 428 GI-----TSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPF 463 (787)
Q Consensus 428 G~-----~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~~~ 463 (787)
+. +...+.+++|||||++|++++.||+|+||++..+
T Consensus 654 ~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~i~iW~i~~~ 694 (694)
T 3dm0_A 654 GPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWGIGRY 694 (694)
T ss_dssp -------CCCCEEEEEECTTSSEEEEEETTSEEEEEEC---
T ss_pred ccccCCceeEEeeeEEEcCCCCEEEEEcCCCeEEEEeccCC
Confidence 00 0113789999999999999999999999998753
No 60
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=99.86 E-value=9e-20 Score=194.08 Aligned_cols=240 Identities=11% Similarity=0.107 Sum_probs=173.2
Q ss_pred CCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCc--eeEeeeeccCcEEEEEEecCCCCCCCCCCccccC
Q 003907 54 DLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASN--FNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLH 130 (787)
Q Consensus 54 ~~~~~v~wa~Fd~l~~~~~~~~~vL~lG~~~G-~qVWdv~~~~~--~~ells~~dg~V~~v~~lP~P~~~~~~d~F~~sr 130 (787)
.|++.|..+.|.. +++.|++|..+| ++|||++. ++ ....+..|.++|.++.+.|+.
T Consensus 6 ~~~~~i~~~~~s~-------~~~~l~~~~~d~~v~i~~~~~-~~~~~~~~~~~h~~~v~~~~~~~~~------------- 64 (372)
T 1k8k_C 6 FLVEPISCHAWNK-------DRTQIAICPNNHEVHIYEKSG-NKWVQVHELKEHNGQVTGVDWAPDS------------- 64 (372)
T ss_dssp SCSSCCCEEEECT-------TSSEEEEECSSSEEEEEEEET-TEEEEEEEEECCSSCEEEEEEETTT-------------
T ss_pred ccCCCeEEEEECC-------CCCEEEEEeCCCEEEEEeCCC-CcEEeeeeecCCCCcccEEEEeCCC-------------
Confidence 3677888888863 367888886665 99999964 44 556677889999999999742
Q ss_pred cEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEe---CCCcEEEEEecC--CeE
Q 003907 131 PFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLR---FRSSVCMVRCSP--RIV 205 (787)
Q Consensus 131 pLLavV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~v~tL~---f~s~V~sV~~s~--~~L 205 (787)
.+|++.+. +++|++||+++++....+. +...|.++++++ ++|
T Consensus 65 ~~l~~~~~---------------------------------dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 111 (372)
T 1k8k_C 65 NRIVTCGT---------------------------------DRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKF 111 (372)
T ss_dssp TEEEEEET---------------------------------TSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEE
T ss_pred CEEEEEcC---------------------------------CCeEEEEECCCCeeeeeEEeecCCCceeEEEECCCCCEE
Confidence 26655331 2589999999998776664 456899999987 577
Q ss_pred EEEe-CCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEcc--ceEEEecCCceecCcceeccccCCCCCc
Q 003907 206 AVGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP--RWLAYASNTLLLSNSGRLSPQNLTPSGV 282 (787)
Q Consensus 206 aV~~-~~~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~~~~~lAlsp--r~LAyas~~~~l~~~g~~s~q~lt~~~~ 282 (787)
+++. ++.|++||+.+.+....+.....+. . .....++++| ++|+
T Consensus 112 ~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~---~------~~i~~~~~~~~~~~l~------------------------ 158 (372)
T 1k8k_C 112 AVGSGSRVISICYFEQENDWWVCKHIKKPI---R------STVLSLDWHPNSVLLA------------------------ 158 (372)
T ss_dssp EEEETTSSEEEEEEETTTTEEEEEEECTTC---C------SCEEEEEECTTSSEEE------------------------
T ss_pred EEEeCCCEEEEEEecCCCcceeeeeeeccc---C------CCeeEEEEcCCCCEEE------------------------
Confidence 7766 5679999988776432222111100 0 0022333333 2222
Q ss_pred CCCcCCCCCceeEeeehhhhhhhhcccceeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEEC------
Q 003907 283 SPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDF------ 356 (787)
Q Consensus 283 s~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl------ 356 (787)
.+..+|.|++||+
T Consensus 159 -------------------------------------------------------------~~~~dg~i~~~d~~~~~~~ 177 (372)
T 1k8k_C 159 -------------------------------------------------------------AGSCDFKCRIFSAYIKEVE 177 (372)
T ss_dssp -------------------------------------------------------------EEETTSCEEEEECCCTTTS
T ss_pred -------------------------------------------------------------EEcCCCCEEEEEccccccc
Confidence 2345677777774
Q ss_pred ------------CCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEE
Q 003907 357 ------------VTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYK 424 (787)
Q Consensus 357 ------------~s~~~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~ 424 (787)
..++.+..+.+|..+|.+++|+|+|++|++++.|| .|++||+.. + ..+..
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-~i~i~d~~~-------~----------~~~~~ 239 (372)
T 1k8k_C 178 ERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDS-TVCLADADK-------K----------MAVAT 239 (372)
T ss_dssp CCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTT-EEEEEEGGG-------T----------TEEEE
T ss_pred ccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCC-EEEEEECCC-------C----------ceeEE
Confidence 46788899999999999999999999999999966 599999854 2 35666
Q ss_pred EecccccccEEEEEEccCCCEEEEEeCCCeEEEEeCCC
Q 003907 425 LHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSP 462 (787)
Q Consensus 425 l~rG~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~~ 462 (787)
+.. +...|.+++|+||+++|+++ .|++|+||++..
T Consensus 240 ~~~--~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~ 274 (372)
T 1k8k_C 240 LAS--ETLPLLAVTFITESSLVAAG-HDCFPVLFTYDS 274 (372)
T ss_dssp EEC--SSCCEEEEEEEETTEEEEEE-TTSSCEEEEEET
T ss_pred Ecc--CCCCeEEEEEecCCCEEEEE-eCCeEEEEEccC
Confidence 652 34579999999999999888 899999999976
No 61
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=99.86 E-value=5.1e-19 Score=195.89 Aligned_cols=275 Identities=15% Similarity=0.133 Sum_probs=194.6
Q ss_pred CCCCCCcE-EEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCceeEeeeeccCcEEEEEEecCCCCCCCCCCcccc
Q 003907 52 SEDLKDQV-TWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKL 129 (787)
Q Consensus 52 ~~~~~~~v-~wa~Fd~l~~~~~~~~~vL~lG~~~G-~qVWdv~~~~~~~ells~~dg~V~~v~~lP~P~~~~~~d~F~~s 129 (787)
..+|.+.| ....|| ++.|++|..+| ++|||+. .+++...+..|.++|.++.+.+ +
T Consensus 114 l~~h~~~v~~~~~~~---------g~~l~sg~~dg~i~vwd~~-~~~~~~~~~~h~~~v~~~~~~~-------------~ 170 (445)
T 2ovr_B 114 LKGHDDHVITCLQFC---------GNRIVSGSDDNTLKVWSAV-TGKCLRTLVGHTGGVWSSQMRD-------------N 170 (445)
T ss_dssp EECSTTSCEEEEEEE---------TTEEEEEETTSCEEEEETT-TCCEEEECCCCSSCEEEEEEET-------------T
T ss_pred ecccCCCcEEEEEEc---------CCEEEEEECCCcEEEEECC-CCcEEEEEcCCCCCEEEEEecC-------------C
Confidence 35677764 444454 35777777776 9999996 4667778889999999998762 2
Q ss_pred CcEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCC-CcEEEEEecCCeEEEE
Q 003907 130 HPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFR-SSVCMVRCSPRIVAVG 208 (787)
Q Consensus 130 rpLLavV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~v~tL~f~-s~V~sV~~s~~~LaV~ 208 (787)
+|++.+. +++|++||+.+++.+.++..+ ..|.++.++++.|+++
T Consensus 171 --~l~s~~~---------------------------------dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~l~s~ 215 (445)
T 2ovr_B 171 --IIISGST---------------------------------DRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSG 215 (445)
T ss_dssp --EEEEEET---------------------------------TSCEEEEETTTTEEEEEECCCSSCEEEEEEETTEEEEE
T ss_pred --EEEEEeC---------------------------------CCeEEEEECCcCcEEEEECCCCCcEEEEEecCCEEEEE
Confidence 5654221 258999999999999999754 5899999999888876
Q ss_pred e-CCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCcceeccccCCCCCcCCCcC
Q 003907 209 L-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTS 287 (787)
Q Consensus 209 ~-~~~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~~~~~lAlspr~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~s 287 (787)
. ++.|++||+.+++.+.++..|..+ ...+++..++|+.++.+..+ ..|+..+.
T Consensus 216 s~dg~i~~wd~~~~~~~~~~~~~~~~-------------v~~~~~~~~~l~~~~~dg~i-----~iwd~~~~-------- 269 (445)
T 2ovr_B 216 SRDATLRVWDIETGQCLHVLMGHVAA-------------VRCVQYDGRRVVSGAYDFMV-----KVWDPETE-------- 269 (445)
T ss_dssp ETTSEEEEEESSSCCEEEEEECCSSC-------------EEEEEECSSCEEEEETTSCE-----EEEEGGGT--------
T ss_pred eCCCEEEEEECCCCcEEEEEcCCccc-------------EEEEEECCCEEEEEcCCCEE-----EEEECCCC--------
Confidence 6 568999999999999888876553 34566666788887654211 12222111
Q ss_pred CCCCceeEeeehhhhhhhhcccceeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECCCCcEEEEecc
Q 003907 288 PGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKA 367 (787)
Q Consensus 288 p~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~v~~~~a 367 (787)
..+ +++..+. +....+.+ .+..++.+..||.|++||+.+++.+..+.+
T Consensus 270 ----~~~----------------~~~~~~~------~~v~~~~~------~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~ 317 (445)
T 2ovr_B 270 ----TCL----------------HTLQGHT------NRVYSLQF------DGIHVVSGSLDTSIRVWDVETGNCIHTLTG 317 (445)
T ss_dssp ----EEE----------------EEECCCS------SCEEEEEE------CSSEEEEEETTSCEEEEETTTCCEEEEECC
T ss_pred ----cEe----------------EEecCCC------CceEEEEE------CCCEEEEEeCCCeEEEEECCCCCEEEEEcC
Confidence 000 1111000 00011111 112245677899999999999999999999
Q ss_pred CCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecc-cccccEEEEEEccCCCEE
Q 003907 368 HTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRG-ITSATIQDICFSHYSQWI 446 (787)
Q Consensus 368 H~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG-~~~a~I~slaFSpDg~~L 446 (787)
|...+.+++++ +.+|++++.||. |++||+.. + ..+..+... .+...|.+++|+ +++|
T Consensus 318 ~~~~v~~~~~~--~~~l~~~~~dg~-i~vwd~~~-------~----------~~~~~~~~~~~~~~~v~~~~~~--~~~l 375 (445)
T 2ovr_B 318 HQSLTSGMELK--DNILVSGNADST-VKIWDIKT-------G----------QCLQTLQGPNKHQSAVTCLQFN--KNFV 375 (445)
T ss_dssp CCSCEEEEEEE--TTEEEEEETTSC-EEEEETTT-------C----------CEEEEECSTTSCSSCEEEEEEC--SSEE
T ss_pred CcccEEEEEEe--CCEEEEEeCCCe-EEEEECCC-------C----------cEEEEEccCCCCCCCEEEEEEC--CCEE
Confidence 99999998884 679999999776 99999854 2 356666431 134579999995 6899
Q ss_pred EEEeCCCeEEEEeCCCCC
Q 003907 447 AIVSSKGTCHVFVLSPFG 464 (787)
Q Consensus 447 As~S~dgTVhIwdl~~~g 464 (787)
++++.||+|+|||+....
T Consensus 376 ~s~~~dg~v~iwd~~~~~ 393 (445)
T 2ovr_B 376 ITSSDDGTVKLWDLKTGE 393 (445)
T ss_dssp EEEETTSEEEEEETTTCC
T ss_pred EEEeCCCeEEEEECCCCc
Confidence 999999999999998643
No 62
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=99.86 E-value=1.9e-19 Score=193.95 Aligned_cols=290 Identities=11% Similarity=0.063 Sum_probs=183.1
Q ss_pred CCCcEEEEEEeeccCCCCCCCe-EEEEEecCc-EEEEEc----cCCCc-----eeEeeee----------ccCcEEEEEE
Q 003907 55 LKDQVTWAGFDRLEYGPSVFKQ-VLLLGYQNG-FQVLDV----EDASN-----FNELVSK----------RDGPVSFLQM 113 (787)
Q Consensus 55 ~~~~v~wa~Fd~l~~~~~~~~~-vL~lG~~~G-~qVWdv----~~~~~-----~~ells~----------~dg~V~~v~~ 113 (787)
|.+.|..+.|.. +++ +|++|..+| ++|||+ +.... ....+.. |.++|.++++
T Consensus 44 ~~~~v~~~~~s~-------~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 116 (425)
T 1r5m_A 44 KLDNIVSSTWNP-------LDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAW 116 (425)
T ss_dssp ECSCCSEEEECS-------SCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEE
T ss_pred ccCceEEEEECC-------CCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEE
Confidence 345666777753 355 888888876 999999 54331 2233333 5779999999
Q ss_pred ecCCCCCCCCCCccccCcEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeC-C
Q 003907 114 QPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRF-R 192 (787)
Q Consensus 114 lP~P~~~~~~d~F~~srpLLavV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~v~tL~f-~ 192 (787)
.|+. .+|++.+. .++|++|| .+++.+..+.. .
T Consensus 117 s~~~-------------~~l~~~~~---------------------------------dg~i~i~~-~~~~~~~~~~~~~ 149 (425)
T 1r5m_A 117 SHDG-------------NSIVTGVE---------------------------------NGELRLWN-KTGALLNVLNFHR 149 (425)
T ss_dssp CTTS-------------SEEEEEET---------------------------------TSCEEEEE-TTSCEEEEECCCC
T ss_pred cCCC-------------CEEEEEeC---------------------------------CCeEEEEe-CCCCeeeeccCCC
Confidence 8742 26665321 25799999 67888888875 4
Q ss_pred CcEEEEEecC--CeEEEEe-CCeEEEEECCCCceeEEEEecCCcccC--CCCccccccccceeEEcc-ceEEEecCCcee
Q 003907 193 SSVCMVRCSP--RIVAVGL-ATQIYCFDALTLENKFSVLTYPVPQLA--GQGAVGINVGYGPMAVGP-RWLAYASNTLLL 266 (787)
Q Consensus 193 s~V~sV~~s~--~~LaV~~-~~~I~iwD~~T~e~l~tl~t~p~p~~~--~~~~~~~~~~~~~lAlsp-r~LAyas~~~~l 266 (787)
..|.++++++ +.|+++. ++.|++||+.+++.+..+..+..+... .............++++| ..++.++.+..
T Consensus 150 ~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~- 228 (425)
T 1r5m_A 150 APIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGA- 228 (425)
T ss_dssp SCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEECCC---------------CCCBSCCEEEETTEEEEECGGGC-
T ss_pred ccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeccccCccceeeccccCCcceeeEEEEcCCCEEEEEcCCCe-
Confidence 6899999987 5666654 678999999999988877654332000 000000000023345555 34444443211
Q ss_pred cCcceeccccCCCCCcCCCcCCCCCceeEeeehhhhhhhhcccceeecccccccCCCCCCCCcccCCccccccccccccC
Q 003907 267 SNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMD 346 (787)
Q Consensus 267 ~~~g~~s~q~lt~~~~s~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~ 346 (787)
...|+..+.. .. +.+..+ .+....+.++++.+ .++.+.
T Consensus 229 ----i~~~d~~~~~------------~~----------------~~~~~~------~~~i~~~~~~~~~~----~l~~~~ 266 (425)
T 1r5m_A 229 ----IFVYQITEKT------------PT----------------GKLIGH------HGPISVLEFNDTNK----LLLSAS 266 (425)
T ss_dssp ----EEEEETTCSS------------CS----------------EEECCC------SSCEEEEEEETTTT----EEEEEE
T ss_pred ----EEEEEcCCCc------------ee----------------eeeccC------CCceEEEEECCCCC----EEEEEc
Confidence 1112211110 00 000000 00011122222222 245667
Q ss_pred CCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEe
Q 003907 347 NAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLH 426 (787)
Q Consensus 347 ~dG~V~IwDl~s~~~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~ 426 (787)
.+|.|++||+.+++.+..+.+|..+|.+++|+|+| +|++++.+| .|+|||+.. + ..+..+.
T Consensus 267 ~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~-~i~i~d~~~-------~----------~~~~~~~ 327 (425)
T 1r5m_A 267 DDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDD-KVISCSMDG-SVRLWSLKQ-------N----------TLLALSI 327 (425)
T ss_dssp TTSCEEEECSSSBSCSEEECCCSSCEEEEEEETTT-EEEEEETTS-EEEEEETTT-------T----------EEEEEEE
T ss_pred CCCEEEEEECCCCccceEecCCCccEEEEEECCCC-EEEEEeCCC-cEEEEECCC-------C----------cEeEecc
Confidence 89999999999999999999999999999999999 999999966 599999854 2 3555554
Q ss_pred cccccccEEEEEEccCCCEEEEEeCCCeEEEEeCCC
Q 003907 427 RGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSP 462 (787)
Q Consensus 427 rG~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~~ 462 (787)
+ +...|.+++|+||+++|++++.||+|+||++..
T Consensus 328 -~-~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~ 361 (425)
T 1r5m_A 328 -V-DGVPIFAGRISQDGQKYAVAFMDGQVNVYDLKK 361 (425)
T ss_dssp -C-TTCCEEEEEECTTSSEEEEEETTSCEEEEECHH
T ss_pred -c-CCccEEEEEEcCCCCEEEEEECCCeEEEEECCC
Confidence 2 335799999999999999999999999999975
No 63
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=99.86 E-value=3e-20 Score=203.55 Aligned_cols=259 Identities=10% Similarity=0.118 Sum_probs=169.3
Q ss_pred CCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCc----------eeEeeeecc------------CcEEEE
Q 003907 55 LKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASN----------FNELVSKRD------------GPVSFL 111 (787)
Q Consensus 55 ~~~~v~wa~Fd~l~~~~~~~~~vL~lG~~~G-~qVWdv~~~~~----------~~ells~~d------------g~V~~v 111 (787)
+.+.|..+.|+. +++.|++|..+| ++|||++.... +...+..|. ++|..+
T Consensus 27 ~~~~V~~v~~s~-------~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l 99 (447)
T 3dw8_B 27 EADIISTVEFNH-------SGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKI 99 (447)
T ss_dssp GGGSEEEEEECS-------SSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEE
T ss_pred ccCcEEEEEECC-------CCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEE
Confidence 568899999974 467899998887 99999975331 355667787 889999
Q ss_pred EEecCCCCCCCCCCccccCcEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEE----
Q 003907 112 QMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEH---- 187 (787)
Q Consensus 112 ~~lP~P~~~~~~d~F~~srpLLavV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~v~---- 187 (787)
++.|+. +..+|++.+. +++|++||+.+++...
T Consensus 100 ~~~~~~-----------~~~~l~s~s~---------------------------------d~~i~iw~~~~~~~~~~~~~ 135 (447)
T 3dw8_B 100 RWLPQK-----------NAAQFLLSTN---------------------------------DKTIKLWKISERDKRPEGYN 135 (447)
T ss_dssp EECCCC-----------SSSEEEEEEC---------------------------------SSCEEEEEEEEEEEEEECCS
T ss_pred EEcCCC-----------CcceEEEeCC---------------------------------CCeEEEEecccccCCcceec
Confidence 999752 1135654332 2589999998755421
Q ss_pred -----------------------------------EE--eCCCcEEEEEecC--CeEEEEeCCeEEEEECCCCc-eeEEE
Q 003907 188 -----------------------------------VL--RFRSSVCMVRCSP--RIVAVGLATQIYCFDALTLE-NKFSV 227 (787)
Q Consensus 188 -----------------------------------tL--~f~s~V~sV~~s~--~~LaV~~~~~I~iwD~~T~e-~l~tl 227 (787)
.+ .+...|.++++++ ++|+++.++.|++||+.+.. .+..+
T Consensus 136 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~ 215 (447)
T 3dw8_B 136 LKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISINSDYETYLSADDLRINLWHLEITDRSFNIV 215 (447)
T ss_dssp CC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEECTTSSEEEEECSSEEEEEETTEEEEEEEEE
T ss_pred ccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEEcCCCCEEEEeCCCeEEEEECCCCCceeeee
Confidence 22 2446899999987 68888877789999998443 33322
Q ss_pred EecCCcccCCCCccccccccceeEEccceEEEecCCceecCcceeccccCCCCCcCCCcCCCCCceeEeeehhhhhhhhc
Q 003907 228 LTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAA 307 (787)
Q Consensus 228 ~t~p~p~~~~~~~~~~~~~~~~lAlspr~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~sp~~g~lva~~a~d~sk~la~ 307 (787)
...+.. ...+ ......++++| .+..
T Consensus 216 ~~~~~~-~~~~-----~~~v~~~~~~p----------------------------------~~~~--------------- 240 (447)
T 3dw8_B 216 DIKPAN-MEEL-----TEVITAAEFHP----------------------------------NSCN--------------- 240 (447)
T ss_dssp ECCCSS-GGGC-----CCCEEEEEECS----------------------------------SCTT---------------
T ss_pred eccccc-cccc-----CcceEEEEECC----------------------------------CCCc---------------
Confidence 211110 0000 00011122211 0000
Q ss_pred ccceeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECCCCcE----EEEeccCCC------------C
Q 003907 308 GLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAI----ISQFKAHTS------------P 371 (787)
Q Consensus 308 G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~----v~~~~aH~~------------p 371 (787)
.++.+..||.|+|||+.+++. +..+.+|.. +
T Consensus 241 ---------------------------------~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (447)
T 3dw8_B 241 ---------------------------------TFVYSSSKGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISS 287 (447)
T ss_dssp ---------------------------------EEEEEETTSCEEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTC
T ss_pred ---------------------------------EEEEEeCCCeEEEEECcCCccccceeeEeccCCCccccccccccCce
Confidence 123456789999999999886 788888886 9
Q ss_pred eEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEeccccc-----------c---cEEEE
Q 003907 372 ISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITS-----------A---TIQDI 437 (787)
Q Consensus 372 IsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~-----------a---~I~sl 437 (787)
|.+++|+|+|++|++++. | .|+|||+... + ..+..+. ++.. . .+..+
T Consensus 288 v~~~~~s~~g~~l~~~~~-~-~v~iwd~~~~------~----------~~~~~~~-~~~~~~~~l~~~~~~~~i~~~~~~ 348 (447)
T 3dw8_B 288 ISDVKFSHSGRYMMTRDY-L-SVKVWDLNME------N----------RPVETYQ-VHEYLRSKLCSLYENDCIFDKFEC 348 (447)
T ss_dssp EEEEEECTTSSEEEEEES-S-EEEEEETTCC------S----------SCSCCEE-SCGGGTTTHHHHHHTSGGGCCCCE
T ss_pred EEEEEECCCCCEEEEeeC-C-eEEEEeCCCC------c----------cccceee-ccccccccccccccccccccceEE
Confidence 999999999999999998 6 5999998531 1 1222222 1110 0 13459
Q ss_pred EEccCCCEEEEEeCCCeEEEEeCCCCCCccccccc
Q 003907 438 CFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQTL 472 (787)
Q Consensus 438 aFSpDg~~LAs~S~dgTVhIwdl~~~gg~~~~~~H 472 (787)
+|+||+++|++++.||+|+|||+... ....+..|
T Consensus 349 ~~s~~~~~l~s~s~dg~v~iwd~~~~-~~~~~~~~ 382 (447)
T 3dw8_B 349 CWNGSDSVVMTGSYNNFFRMFDRNTK-RDITLEAS 382 (447)
T ss_dssp EECTTSSEEEEECSTTEEEEEETTTC-CEEEEECC
T ss_pred EECCCCCEEEEeccCCEEEEEEcCCC-cceeeeec
Confidence 99999999999999999999999864 33344444
No 64
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.86 E-value=3.2e-20 Score=214.01 Aligned_cols=289 Identities=14% Similarity=0.066 Sum_probs=174.5
Q ss_pred eEEEEEecCc-EEEEEccCCCcee----EeeeeccCcEEEEEEecCCCCCCCCCCccccCcEEEEEEcCCCCCCCCCCCc
Q 003907 76 QVLLLGYQNG-FQVLDVEDASNFN----ELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNR 150 (787)
Q Consensus 76 ~vL~lG~~~G-~qVWdv~~~~~~~----ells~~dg~V~~v~~lP~P~~~~~~d~F~~srpLLavV~~d~~~~~~~~~~~ 150 (787)
+.|+.|..+| ++|||++. +++. ..+..|.+.|..|++.|... +.+...+||.++.
T Consensus 174 ~~laS~s~D~tI~iWd~~~-~~~~~~~~~~l~~~~~~V~~v~wsp~~~-------~~~~~~~LAs~s~------------ 233 (524)
T 2j04_B 174 EMFDKEKHSSCIQIFKMNT-STLHCVKVQTIVHSFGEVWDLKWHEGCH-------APHLVGCLSFVSQ------------ 233 (524)
T ss_dssp --------CEEEEEEEEET-TTCCEEEEEEEEECCCSEEEEEECSSCC-------CSSSSCEEEEEET------------
T ss_pred hhhccCCCCceEEEEEccC-CCCCceEEEEEEecCCcEEEEEECCCCC-------CCCCCceEEEEec------------
Confidence 3444454554 89999965 4332 33566778999999998632 1122347765432
Q ss_pred CCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeE-----------EEEEeCC-CcEEEEEecC-CeEEEEe-CCeEEEE
Q 003907 151 SHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCY-----------EHVLRFR-SSVCMVRCSP-RIVAVGL-ATQIYCF 216 (787)
Q Consensus 151 ~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~-----------v~tL~f~-s~V~sV~~s~-~~LaV~~-~~~I~iw 216 (787)
+++|+|||+.+++. ..++..+ ..|.+++|++ ..|++|. ++.|++|
T Consensus 234 ---------------------DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~~~lasgs~DgtV~lW 292 (524)
T 2j04_B 234 ---------------------EGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSPTTVVCGFKNGFVAEF 292 (524)
T ss_dssp ---------------------TSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSSSEEEEEETTSEEEEE
T ss_pred ---------------------CCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCCCeEEEEeCCCEEEEE
Confidence 25899999987642 2355544 5899999976 6777765 5689999
Q ss_pred ECCCCce-eEEEEecCCcccCCCCcccccccccee--EEcc---ceEEEecCCceecCcceeccccCCCCCcCCCcCCCC
Q 003907 217 DALTLEN-KFSVLTYPVPQLAGQGAVGINVGYGPM--AVGP---RWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGG 290 (787)
Q Consensus 217 D~~T~e~-l~tl~t~p~p~~~~~~~~~~~~~~~~l--Alsp---r~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~sp~~ 290 (787)
|+.+++. ..++..|..+ ...+ +++| .+||+++.+.. ...|+..++.
T Consensus 293 D~~~~~~~~~~~~~H~~~-------------V~sv~~~~s~~g~~~laS~S~D~t-----vklWD~~~~~---------- 344 (524)
T 2j04_B 293 DLTDPEVPSFYDQVHDSY-------------ILSVSTAYSDFEDTVVSTVAVDGY-----FYIFNPKDIA---------- 344 (524)
T ss_dssp ETTBCSSCSEEEECSSSC-------------EEEEEEECCTTSCCEEEEEETTSE-----EEEECGGGHH----------
T ss_pred ECCCCCCceEEeeccccc-------------EEEEEEEcCCCCCeEEEEeccCCe-----EEEEECCCCC----------
Confidence 9998754 4456666553 2344 4455 47888876521 1123321110
Q ss_pred CceeEeeehhhhhhhhcccceeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECCCCcEEEEeccCCC
Q 003907 291 SSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTS 370 (787)
Q Consensus 291 g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~v~~~~aH~~ 370 (787)
..+++.++. ..+....+.++++.+ .++.++.|++|+|||+.++..+.++.+|.+
T Consensus 345 ------------------~~~~~~~~~----~~~~v~~v~fsp~~~----~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~ 398 (524)
T 2j04_B 345 ------------------TTKTTVSRF----RGSNLVPVVYCPQIY----SYIYSDGASSLRAVPSRAAFAVHPLVSRET 398 (524)
T ss_dssp ------------------HHCEEEEEC----SCCSCCCEEEETTTT----EEEEECSSSEEEEEETTCTTCCEEEEECSS
T ss_pred ------------------ccccccccc----ccCcccceEeCCCcC----eEEEeCCCCcEEEEECcccccceeeecCCC
Confidence 001111111 011122334444332 245667889999999999998889999999
Q ss_pred CeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCC---------ccccCC------------------cceEEE
Q 003907 371 PISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNH---------KYDWNS------------------SHVHLY 423 (787)
Q Consensus 371 pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~---------~~~~~~------------------s~~~l~ 423 (787)
+|++|+|||+|++|||||.||+ |+|||+.........+.. ...+++ ....+.
T Consensus 399 ~V~sva~Sp~g~~l~Sgs~Dgt-v~lwd~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~~~~~~~~~~~~~~g~~~~ 477 (524)
T 2j04_B 399 TITAIGVSRLHPMVLAGSADGS-LIITNAARRLLHGIKNSSATQKSLRLWKWDYSIKDDKYRIDSSYEVYPLTVNDVSKA 477 (524)
T ss_dssp CEEEEECCSSCCBCEEEETTTE-EECCBSCSSTTTCC------CCCCEEEECBCCSSSCEEEECCCCCCCC---------
T ss_pred ceEEEEeCCCCCeEEEEECCCE-EEEEechHhhccccccCccceeeeEEEEeccCCCCCeEEccCCceecccccCCccee
Confidence 9999999999999999999665 999997432111000000 001111 012233
Q ss_pred EEecccccccEEEEEEccCC---CEEEEEeCCCeEEEEeCCC
Q 003907 424 KLHRGITSATIQDICFSHYS---QWIAIVSSKGTCHVFVLSP 462 (787)
Q Consensus 424 ~l~rG~~~a~I~slaFSpDg---~~LAs~S~dgTVhIwdl~~ 462 (787)
.+. | +...|.+++||||+ .+||+|+.||+|+||++.-
T Consensus 478 ~l~-g-h~~~V~~Vafsp~~~~~~~lAsg~~~g~vrlw~l~~ 517 (524)
T 2j04_B 478 KID-A-HGINITCTKWNETSAGGKCYAFSNSAGLLTLEYLSL 517 (524)
T ss_dssp ------CCCSCCCEEECCSTTTTTEEEEECTTSEEEEEECSC
T ss_pred eec-C-CCceEEEEECCCCCCccHHHHhhccCceEEEEEccc
Confidence 332 3 23569999999995 4999999999999999864
No 65
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.86 E-value=1.8e-19 Score=224.31 Aligned_cols=353 Identities=13% Similarity=0.082 Sum_probs=207.2
Q ss_pred CCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCceeEeeeeccCcEEEEEEecCCCCCCCCCCccccCc
Q 003907 53 EDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHP 131 (787)
Q Consensus 53 ~~~~~~v~wa~Fd~l~~~~~~~~~vL~lG~~~G-~qVWdv~~~~~~~ells~~dg~V~~v~~lP~P~~~~~~d~F~~srp 131 (787)
.+|.+.|..+.|.. ...+.+|++|..+| ++|||+.. +++...+..|.++|.++.+.|+. .
T Consensus 696 ~~~~~~v~~~~~~~-----~~~~~~l~sg~~d~~v~vwd~~~-~~~~~~~~~h~~~v~~~~~sp~~-------------~ 756 (1249)
T 3sfz_A 696 DEHSEQVNCCHFTN-----KSNHLLLATGSNDFFLKLWDLNQ-KECRNTMFGHTNSVNHCRFSPDD-------------E 756 (1249)
T ss_dssp ECCSSCEEEEEECS-----SSSCCEEEEEETTSCEEEEETTS-SSEEEEECCCSSCEEEEEECSST-------------T
T ss_pred cCCCCcEEEEEEec-----CCCceEEEEEeCCCeEEEEECCC-cchhheecCCCCCEEEEEEecCC-------------C
Confidence 45677788888753 22456888888877 99999964 66777888899999999998752 2
Q ss_pred EEEEEEcCCCCCCCC---CCC-----------------cCCCCCcccCCcCCCCCCC--CCCCCEEEEEECCCCeEEEEE
Q 003907 132 FLLVVAGEDTNTLAP---GQN-----------------RSHLGGVRDGMMDSQSGNC--VNSPTAVRFYSFQSHCYEHVL 189 (787)
Q Consensus 132 LLavV~~d~~~~~~~---~~~-----------------~~~~~~~r~g~~~~~~~~~--~~~p~tVrlWdlktg~~v~tL 189 (787)
+|++++.|+....=+ .+. .+....+..-.+.+. +.. ....+.|.+||+.++..+..+
T Consensus 757 ~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d-g~~l~~~~~~~v~~~d~~~~~~~~~~ 835 (1249)
T 3sfz_A 757 LLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSAD-GDKIIVAAKNKVLLFDIHTSGLLAEI 835 (1249)
T ss_dssp EEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTT-SSEEEEEETTEEEEEETTTCCEEEEE
T ss_pred EEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCC-CCEEEEEcCCcEEEEEecCCCceeEE
Confidence 565544332110000 000 000000000011110 000 113478999999999988888
Q ss_pred e--CCCcEEEEEecC--CeEEEEe-CCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEcc--ceEEEecC
Q 003907 190 R--FRSSVCMVRCSP--RIVAVGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP--RWLAYASN 262 (787)
Q Consensus 190 ~--f~s~V~sV~~s~--~~LaV~~-~~~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~~~~~lAlsp--r~LAyas~ 262 (787)
. +...|..+++++ ++++++. ++.|++||+.+++.+.++..|..+ ...++++| ++|++++.
T Consensus 836 ~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~-------------v~~v~~spdg~~l~s~s~ 902 (1249)
T 3sfz_A 836 HTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSW-------------VHGVMFSPDGSSFLTASD 902 (1249)
T ss_dssp ECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSSC-------------EEEEEECTTSSEEEEEET
T ss_pred cCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCccc-------------eEEEEECCCCCEEEEEeC
Confidence 5 346899999987 6777765 457999999999888887766553 34566666 56666554
Q ss_pred Cc--eecCcce---------------------------------eccccCC-------C-CCcCCCcCCCCCceeEeeeh
Q 003907 263 TL--LLSNSGR---------------------------------LSPQNLT-------P-SGVSPSTSPGGSSLVARYAM 299 (787)
Q Consensus 263 ~~--~l~~~g~---------------------------------~s~q~lt-------~-~~~s~s~sp~~g~lva~~a~ 299 (787)
+. .+++... ..+...+ . ......++|.+..+++ ...
T Consensus 903 dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~-g~~ 981 (1249)
T 3sfz_A 903 DQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAF-GDE 981 (1249)
T ss_dssp TSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEE-EET
T ss_pred CCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEE-EcC
Confidence 32 1121000 0000000 0 0001112222222111 111
Q ss_pred hhhhhh---hccc-ceeecccccc-----cCCCC------------------------------CCCCcccCCccccccc
Q 003907 300 EHSKQF---AAGL-SKTLSKYCQE-----LLPDG------------------------------SSSPVSPNSVWKVGRH 340 (787)
Q Consensus 300 d~sk~l---a~G~-~ktls~~~~~-----l~p~~------------------------------s~~~~s~s~~~~~~~~ 340 (787)
+....+ ..+. ...+..+... +.|++ ......++++.
T Consensus 982 ~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~----- 1056 (1249)
T 3sfz_A 982 DGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVFLQAHQETVKDFRLLQDS----- 1056 (1249)
T ss_dssp TSCCEEEETTTTSCEEECCCCSSCCCCEEECSSSSCEEEECSSSBEEEEETTTTEEECCBCCSSCEEEEEECSSS-----
T ss_pred CCCEEEEEcCCCceeeecccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCceEEEecCCCcEEEEEEcCCC-----
Confidence 110000 0000 0000000000 00110 01111122211
Q ss_pred cccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcce
Q 003907 341 AGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHV 420 (787)
Q Consensus 341 ~~~s~~~dG~V~IwDl~s~~~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~ 420 (787)
.+..+..+|.|++||+.+++.+..+.+|..+|.+++|+|+|++||+++.||+ |+|||+.. + .
T Consensus 1057 ~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~s~d~~-v~iwd~~~-------~----------~ 1118 (1249)
T 3sfz_A 1057 RLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKT-AKIWSFDL-------L----------S 1118 (1249)
T ss_dssp EEEEEESSSEEEEEETTTTCCCEEEECCSSCCCCEEECSSSSSCEEECCSSC-CCEECSSS-------S----------S
T ss_pred cEEEEECCCcEEEEECCCCceeEEEcccCCcEEEEEECCCCCEEEEEcCCCc-EEEEECCC-------c----------c
Confidence 1345678999999999999999999999999999999999999999999776 99999854 2 1
Q ss_pred EEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEeCCCCC
Q 003907 421 HLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFG 464 (787)
Q Consensus 421 ~l~~l~rG~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~~~g 464 (787)
.+..+. + +...|.+++|||||++||+++.||+|+|||+....
T Consensus 1119 ~~~~l~-~-h~~~v~~~~~s~dg~~lat~~~dg~i~vwd~~~~~ 1160 (1249)
T 3sfz_A 1119 PLHELK-G-HNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQ 1160 (1249)
T ss_dssp CSBCCC-C-CSSCEEEEEECSSSSEEEEEETTSCCCEEESSSSC
T ss_pred eeeeec-c-CCCcEEEEEECCCCCEEEEEeCCCEEEEEECCCCc
Confidence 223332 3 34569999999999999999999999999998644
No 66
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=99.86 E-value=1.2e-19 Score=206.50 Aligned_cols=321 Identities=11% Similarity=0.036 Sum_probs=198.3
Q ss_pred CCCC---cEEEEEEeeccCCCCCC-CeEEEEEecCc-EEEEEccCCCceeEee-e---eccCcEEEEEEecCCCCCCCCC
Q 003907 54 DLKD---QVTWAGFDRLEYGPSVF-KQVLLLGYQNG-FQVLDVEDASNFNELV-S---KRDGPVSFLQMQPFPVKDDGCE 124 (787)
Q Consensus 54 ~~~~---~v~wa~Fd~l~~~~~~~-~~vL~lG~~~G-~qVWdv~~~~~~~ell-s---~~dg~V~~v~~lP~P~~~~~~d 124 (787)
.|.+ .|..+.|.. + ++.|++|..+| ++|||+.. ++....+ . .|.++|..+.+. +.
T Consensus 201 ~~~~~~~~v~~~~~~~-------~~~~~l~~~~~dg~i~vwd~~~-~~~~~~~~~~~~~~~~~v~~~~~~-~~------- 264 (615)
T 1pgu_A 201 THHKQGSFVRDVEFSP-------DSGEFVITVGSDRKISCFDGKS-GEFLKYIEDDQEPVQGGIFALSWL-DS------- 264 (615)
T ss_dssp SSSCTTCCEEEEEECS-------TTCCEEEEEETTCCEEEEETTT-CCEEEECCBTTBCCCSCEEEEEES-SS-------
T ss_pred ccCCCCceEEEEEECC-------CCCCEEEEEeCCCeEEEEECCC-CCEeEEecccccccCCceEEEEEc-CC-------
Confidence 4556 788888863 3 56788777765 99999965 5555555 5 788999999876 31
Q ss_pred CccccCcEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCC-----CcEEEEE
Q 003907 125 GFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFR-----SSVCMVR 199 (787)
Q Consensus 125 ~F~~srpLLavV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~v~tL~f~-----s~V~sV~ 199 (787)
.+|++.+. +++|++||+++++.+.++..+ ..+..+.
T Consensus 265 ------~~l~~~~~---------------------------------d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (615)
T 1pgu_A 265 ------QKFATVGA---------------------------------DATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVV 305 (615)
T ss_dssp ------SEEEEEET---------------------------------TSEEEEEETTTTEEEEEEECCTTCGGGCEEEEE
T ss_pred ------CEEEEEcC---------------------------------CCcEEEEECCCCcEEEEEcCCCCcccCceeEEE
Confidence 25654321 258999999999999999876 5677777
Q ss_pred e-cCCeEEEEe-CCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEccceEEEecCCc--eecCcceeccc
Q 003907 200 C-SPRIVAVGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTL--LLSNSGRLSPQ 275 (787)
Q Consensus 200 ~-s~~~LaV~~-~~~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~~~~~lAlspr~LAyas~~~--~l~~~g~~s~q 275 (787)
+ +.+.|+++. ++.|++||+.+++.+.++..|..+ ...+++ |. |+.++.+. .+++...+. .
T Consensus 306 ~~~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~-------------v~~~~~-~~-l~~~~~dg~i~~w~~~~~~-~ 369 (615)
T 1pgu_A 306 ATGNGRIISLSLDGTLNFYELGHDEVLKTISGHNKG-------------ITALTV-NP-LISGSYDGRIMEWSSSSMH-Q 369 (615)
T ss_dssp EEETTEEEEEETTSCEEEEETTEEEEEEEECCCSSC-------------EEEEET-TT-TEEEETTSCEEETTTTEEE-C
T ss_pred eCCCCeEEEEECCCCEEEEECCCCcEEEEEeCCCCC-------------EEEEEe-cC-cEEECCCCeEEEEEchhhc-C
Confidence 7 446677655 568999999998888887766543 234555 55 55554432 122211000 0
Q ss_pred cCCCCCcCCCcCCCCCceeEeeehhhhhhhh---cc---------------------cceee------cccccc-cCCCC
Q 003907 276 NLTPSGVSPSTSPGGSSLVARYAMEHSKQFA---AG---------------------LSKTL------SKYCQE-LLPDG 324 (787)
Q Consensus 276 ~lt~~~~s~s~sp~~g~lva~~a~d~sk~la---~G---------------------~~ktl------s~~~~~-l~p~~ 324 (787)
..........+ +.+..+++ ...|....+. .+ ..+.+ .+.... +....
T Consensus 370 ~~~~~v~~~~~-~~~~~l~~-~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 447 (615)
T 1pgu_A 370 DHSNLIVSLDN-SKAQEYSS-ISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNS 447 (615)
T ss_dssp CCCSCEEEEEC-CSTTCCEE-EETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSS
T ss_pred cccCceEEEEE-CCCcEEEE-EeCCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecccCC
Confidence 00001111111 11111111 1111110000 00 00000 000000 00000
Q ss_pred CCCCcccCCccccccccccccCC-CceEEEEECCCCcEE-EEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCC
Q 003907 325 SSSPVSPNSVWKVGRHAGADMDN-AGIVVVKDFVTRAII-SQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPS 402 (787)
Q Consensus 325 s~~~~s~s~~~~~~~~~~~s~~~-dG~V~IwDl~s~~~v-~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~ 402 (787)
....+.++ +..++.+.. +|.|++||+.+++.. ..+.+|..+|.+++|+|+|++||+++.||. |+|||+..
T Consensus 448 ~~~~~~~~------~~~l~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~-i~iw~~~~- 519 (615)
T 1pgu_A 448 PGSAVSLS------QNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGK-ILLYDLQS- 519 (615)
T ss_dssp CEEEEEEC------SSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSC-EEEEETTT-
T ss_pred CceEEEEc------CCEEEEeecCCCeEEEEECCCccccccccCCccCceEEEEECCCCCEEEEcCCCCe-EEEeeCCC-
Confidence 01111111 123445667 999999999988766 778899999999999999999999999776 99999954
Q ss_pred cccCCCCCCccccCCcceEEEEEecccccccEEEEEEcc----------CCCEEEEEeCCCeEEEEeCCCCC-Ccccccc
Q 003907 403 CMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSH----------YSQWIAIVSSKGTCHVFVLSPFG-GDSGFQT 471 (787)
Q Consensus 403 ~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSp----------Dg~~LAs~S~dgTVhIwdl~~~g-g~~~~~~ 471 (787)
+ ..+..+. +.+...|.+++|+| |+++||+++.||+|+||++...+ ....+..
T Consensus 520 ------~----------~~~~~~~-~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~ 582 (615)
T 1pgu_A 520 ------R----------EVKTSRW-AFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNA 582 (615)
T ss_dssp ------T----------EEEECCS-CCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTS
T ss_pred ------C----------cceeEee-cCCCCceeEEEEcCccccccccccCCCEEEEEcCCCcEEEEECCCCceechhhhc
Confidence 2 3444443 32456799999999 99999999999999999998753 2333455
Q ss_pred c
Q 003907 472 L 472 (787)
Q Consensus 472 H 472 (787)
|
T Consensus 583 h 583 (615)
T 1pgu_A 583 H 583 (615)
T ss_dssp S
T ss_pred C
Confidence 5
No 67
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.86 E-value=8.1e-20 Score=202.32 Aligned_cols=241 Identities=14% Similarity=0.157 Sum_probs=174.6
Q ss_pred CCCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCceeEeeeeccCcEEEEEEecCCCCCCCCCCccccC
Q 003907 52 SEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLH 130 (787)
Q Consensus 52 ~~~~~~~v~wa~Fd~l~~~~~~~~~vL~lG~~~G-~qVWdv~~~~~~~ells~~dg~V~~v~~lP~P~~~~~~d~F~~sr 130 (787)
..+|.+.|..+.|| ++.|++|..+| ++|||++. +++...+..|.++|.++.+.+ .
T Consensus 169 ~~~h~~~v~~l~~~---------~~~l~sg~~dg~i~vwd~~~-~~~~~~~~~h~~~v~~l~~~~-------------~- 224 (435)
T 1p22_A 169 LTGHTGSVLCLQYD---------ERVIITGSSDSTVRVWDVNT-GEMLNTLIHHCEAVLHLRFNN-------------G- 224 (435)
T ss_dssp ECCCSSCEEEEECC---------SSEEEEEETTSCEEEEESSS-CCEEEEECCCCSCEEEEECCT-------------T-
T ss_pred EcCCCCcEEEEEEC---------CCEEEEEcCCCeEEEEECCC-CcEEEEEcCCCCcEEEEEEcC-------------C-
Confidence 34577888888874 35788888876 99999964 667777888899999998753 2
Q ss_pred cEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEE---EEEe-CCCcEEEEEecCCeEE
Q 003907 131 PFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYE---HVLR-FRSSVCMVRCSPRIVA 206 (787)
Q Consensus 131 pLLavV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~v---~tL~-f~s~V~sV~~s~~~La 206 (787)
+|++.+. +++|++||+++++.+ ..+. +...|.++.++.+.|+
T Consensus 225 -~l~s~s~---------------------------------dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~ 270 (435)
T 1p22_A 225 -MMVTCSK---------------------------------DRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIV 270 (435)
T ss_dssp -EEEEEET---------------------------------TSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEETTEEE
T ss_pred -EEEEeeC---------------------------------CCcEEEEeCCCCCCceeeeEecCCCCcEEEEEeCCCEEE
Confidence 5554221 258999999988765 4444 3468999999998888
Q ss_pred EEe-CCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCcceeccccCCCCCcCCC
Q 003907 207 VGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPS 285 (787)
Q Consensus 207 V~~-~~~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~~~~~lAlspr~LAyas~~~~l~~~g~~s~q~lt~~~~s~s 285 (787)
++. ++.|++||+.+++.+.++..|..+ ...+++.+++|
T Consensus 271 s~~~dg~i~vwd~~~~~~~~~~~~~~~~-------------v~~~~~~~~~l---------------------------- 309 (435)
T 1p22_A 271 SASGDRTIKVWNTSTCEFVRTLNGHKRG-------------IACLQYRDRLV---------------------------- 309 (435)
T ss_dssp EEETTSEEEEEETTTCCEEEEEECCSSC-------------EEEEEEETTEE----------------------------
T ss_pred EEeCCCeEEEEECCcCcEEEEEcCCCCc-------------EEEEEeCCCEE----------------------------
Confidence 876 567999999999988888765442 11222211111
Q ss_pred cCCCCCceeEeeehhhhhhhhcccceeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECCCCcEEEEe
Q 003907 286 TSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQF 365 (787)
Q Consensus 286 ~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~v~~~ 365 (787)
+.+..||.|+|||+.+++.+..+
T Consensus 310 ---------------------------------------------------------~~g~~dg~i~iwd~~~~~~~~~~ 332 (435)
T 1p22_A 310 ---------------------------------------------------------VSGSSDNTIRLWDIECGACLRVL 332 (435)
T ss_dssp ---------------------------------------------------------EEEETTSCEEEEETTTCCEEEEE
T ss_pred ---------------------------------------------------------EEEeCCCeEEEEECCCCCEEEEE
Confidence 12346889999999999999999
Q ss_pred ccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCE
Q 003907 366 KAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQW 445 (787)
Q Consensus 366 ~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~ 445 (787)
.+|..+|.+++| +|.+|++++.||. |+|||+...... . .......+..+. + +...|.+++| |+++
T Consensus 333 ~~h~~~v~~~~~--~~~~l~sg~~dg~-i~vwd~~~~~~~---~-----~~~~~~~~~~~~-~-h~~~v~~l~~--~~~~ 397 (435)
T 1p22_A 333 EGHEELVRCIRF--DNKRIVSGAYDGK-IKVWDLVAALDP---R-----APAGTLCLRTLV-E-HSGRVFRLQF--DEFQ 397 (435)
T ss_dssp CCCSSCEEEEEC--CSSEEEEEETTSC-EEEEEHHHHTST---T-----SCTTTTEEEEEC-C-CSSCCCCEEE--CSSC
T ss_pred eCCcCcEEEEEe--cCCEEEEEeCCCc-EEEEECCCCCCc---c-----ccccchheeecc-C-CCCCeEEEEe--CCCE
Confidence 999999999999 7899999999776 999998531000 0 000012455553 3 3457999999 8899
Q ss_pred EEEEeCCCeEEEEeCCCC
Q 003907 446 IAIVSSKGTCHVFVLSPF 463 (787)
Q Consensus 446 LAs~S~dgTVhIwdl~~~ 463 (787)
|++++.||+|+|||+...
T Consensus 398 l~s~s~Dg~i~iwd~~~~ 415 (435)
T 1p22_A 398 IVSSSHDDTILIWDFLND 415 (435)
T ss_dssp EEECCSSSEEEEEC----
T ss_pred EEEEeCCCEEEEEECCCC
Confidence 999999999999999764
No 68
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=99.86 E-value=4.5e-20 Score=200.88 Aligned_cols=176 Identities=13% Similarity=0.130 Sum_probs=134.8
Q ss_pred CEEEEEECCCCeEEEEEe-CCCcEEEEEecC--CeEEEEe-CCeEEEEECCCCceeEEEEecCCcccCCCCccccccccc
Q 003907 173 TAVRFYSFQSHCYEHVLR-FRSSVCMVRCSP--RIVAVGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYG 248 (787)
Q Consensus 173 ~tVrlWdlktg~~v~tL~-f~s~V~sV~~s~--~~LaV~~-~~~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~~~~ 248 (787)
++|++||+++++.+..+. +...|.++++++ ++|+++. ++.|++||+.+++.+.++..|..+ ..
T Consensus 119 g~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~-------------v~ 185 (420)
T 3vl1_A 119 GDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRAT-------------VT 185 (420)
T ss_dssp SCEEEECTTSCEEEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEECCSSC-------------EE
T ss_pred CCEEEEeCCCcceeeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCc-------------EE
Confidence 589999999999988874 557999999987 5777765 568999999999988888766543 23
Q ss_pred eeEEcc--ceEEEecCCceecCcceeccccCCCCCcCCCcCCCCCceeEeeehhhhhhhhcccceeecccccccCCCCCC
Q 003907 249 PMAVGP--RWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSS 326 (787)
Q Consensus 249 ~lAlsp--r~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~ 326 (787)
.++++| ++|+
T Consensus 186 ~~~~~~~~~~l~-------------------------------------------------------------------- 197 (420)
T 3vl1_A 186 DIAIIDRGRNVL-------------------------------------------------------------------- 197 (420)
T ss_dssp EEEEETTTTEEE--------------------------------------------------------------------
T ss_pred EEEEcCCCCEEE--------------------------------------------------------------------
Confidence 344433 1222
Q ss_pred CCcccCCccccccccccccCCCceEEEEECCCCcEEEEeccC------------------------CCCeEEEEECCCCC
Q 003907 327 SPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAH------------------------TSPISALCFDPSGT 382 (787)
Q Consensus 327 ~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~v~~~~aH------------------------~~pIsaLaFSpdG~ 382 (787)
++..||.|++||+.+++.+..+..| ..+|.+++|+|+|+
T Consensus 198 -----------------s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 260 (420)
T 3vl1_A 198 -----------------SASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGK 260 (420)
T ss_dssp -----------------EEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTE
T ss_pred -----------------EEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCC
Confidence 2345778888888888888887753 34555566789999
Q ss_pred EEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCC-EEEEEeCCCeEEEEeCC
Q 003907 383 LLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQ-WIAIVSSKGTCHVFVLS 461 (787)
Q Consensus 383 lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~-~LAs~S~dgTVhIwdl~ 461 (787)
+|++++.||. |+|||+.. + ..+..+..+ +...|.+++|+||++ +|++++.||+|+|||+.
T Consensus 261 ~l~~~~~dg~-i~i~d~~~-------~----------~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~ 321 (420)
T 3vl1_A 261 YVIAGHVSGV-ITVHNVFS-------K----------EQTIQLPSK-FTCSCNSLTVDGNNANYIYAGYENGMLAQWDLR 321 (420)
T ss_dssp EEEEEETTSC-EEEEETTT-------C----------CEEEEECCT-TSSCEEEEEECSSCTTEEEEEETTSEEEEEETT
T ss_pred EEEEEcCCCe-EEEEECCC-------C----------ceeEEcccc-cCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcC
Confidence 9999999776 99999954 2 355555443 345799999999999 99999999999999998
Q ss_pred CCCC
Q 003907 462 PFGG 465 (787)
Q Consensus 462 ~~gg 465 (787)
....
T Consensus 322 ~~~~ 325 (420)
T 3vl1_A 322 SPEC 325 (420)
T ss_dssp CTTS
T ss_pred CCcC
Confidence 7544
No 69
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.85 E-value=7.2e-19 Score=218.98 Aligned_cols=291 Identities=14% Similarity=0.065 Sum_probs=204.8
Q ss_pred CCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCceeEeeeeccCcEEEEEEecCCCCCCCCCCccccCc
Q 003907 53 EDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHP 131 (787)
Q Consensus 53 ~~~~~~v~wa~Fd~l~~~~~~~~~vL~lG~~~G-~qVWdv~~~~~~~ells~~dg~V~~v~~lP~P~~~~~~d~F~~srp 131 (787)
.+|++.|..+.|.. +++.|++|..+| ++|||+.. ++....+..|.++|.++++.|+. .
T Consensus 612 ~~h~~~v~~~~~s~-------~~~~l~s~~~d~~i~vw~~~~-~~~~~~~~~h~~~v~~~~~s~~~-------------~ 670 (1249)
T 3sfz_A 612 RPHTDAVYHACFSQ-------DGQRIASCGADKTLQVFKAET-GEKLLDIKAHEDEVLCCAFSSDD-------------S 670 (1249)
T ss_dssp CCCSSCEEEEEECT-------TSSEEEEEETTSCEEEEETTT-CCEEEEECCCSSCEEEEEECTTS-------------S
T ss_pred ecccccEEEEEECC-------CCCEEEEEeCCCeEEEEECCC-CCEEEEeccCCCCEEEEEEecCC-------------C
Confidence 46888999999964 467888888877 99999964 56666778899999999999752 2
Q ss_pred EEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCC-CcEEEEEecC----CeEE
Q 003907 132 FLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFR-SSVCMVRCSP----RIVA 206 (787)
Q Consensus 132 LLavV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~v~tL~f~-s~V~sV~~s~----~~La 206 (787)
+||+.+. +++|++||+.+++.+.++..+ ..|.+++|++ .+++
T Consensus 671 ~l~s~~~---------------------------------d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~ 717 (1249)
T 3sfz_A 671 YIATCSA---------------------------------DKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLA 717 (1249)
T ss_dssp EEEEEET---------------------------------TSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSCCEEE
T ss_pred EEEEEeC---------------------------------CCeEEEEECCCCceEEEEcCCCCcEEEEEEecCCCceEEE
Confidence 6665331 258999999999999999755 5899999976 3666
Q ss_pred EEe-CCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEcc--ceEEEecCCceecCcceeccccCCCCCcC
Q 003907 207 VGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP--RWLAYASNTLLLSNSGRLSPQNLTPSGVS 283 (787)
Q Consensus 207 V~~-~~~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~~~~~lAlsp--r~LAyas~~~~l~~~g~~s~q~lt~~~~s 283 (787)
++. ++.|++||+.+++.+.++..|..+ ...++++| ++|++++.+..+ ..|+..+...
T Consensus 718 sg~~d~~v~vwd~~~~~~~~~~~~h~~~-------------v~~~~~sp~~~~l~s~s~dg~v-----~vwd~~~~~~-- 777 (1249)
T 3sfz_A 718 TGSNDFFLKLWDLNQKECRNTMFGHTNS-------------VNHCRFSPDDELLASCSADGTL-----RLWDVRSANE-- 777 (1249)
T ss_dssp EEETTSCEEEEETTSSSEEEEECCCSSC-------------EEEEEECSSTTEEEEEESSSEE-----EEEEGGGTEE--
T ss_pred EEeCCCeEEEEECCCcchhheecCCCCC-------------EEEEEEecCCCEEEEEECCCeE-----EEEeCCCCcc--
Confidence 655 567999999999998888876653 45688888 788888765211 1233211100
Q ss_pred CCcCCCCCceeEeeehhhhhhhhcccceeeccccc-ccCCCCCCCCcccCCccccccccccccCCCceEEEEECCCCcEE
Q 003907 284 PSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQ-ELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAII 362 (787)
Q Consensus 284 ~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~-~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~v 362 (787)
....... +.+..... ............++++++.. +. ..++.+.+||+.++..+
T Consensus 778 ----------~~~~~~~----------~~~~~~~~~~~~~~~~v~~~~~s~dg~~l----~~-~~~~~v~~~d~~~~~~~ 832 (1249)
T 3sfz_A 778 ----------RKSINVK----------RFFLSSEDPPEDVEVIVKCCSWSADGDKI----IV-AAKNKVLLFDIHTSGLL 832 (1249)
T ss_dssp ----------EEEEECC----------CCC--------CCCCCBCCCCBCTTSSEE----EE-EETTEEEEEETTTCCEE
T ss_pred ----------cceeccc----------ccccccCCccccccceEEEEEECCCCCEE----EE-EcCCcEEEEEecCCCce
Confidence 0000000 00000000 00000012223344443322 22 23789999999999988
Q ss_pred EEec-cCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEcc
Q 003907 363 SQFK-AHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSH 441 (787)
Q Consensus 363 ~~~~-aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSp 441 (787)
..+. +|..+|.+++|+|+|+++++++.+|. |++||+.. + ..+..+. + +...|.+++|+|
T Consensus 833 ~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~-v~vwd~~~-------~----------~~~~~~~-~-h~~~v~~v~~sp 892 (1249)
T 3sfz_A 833 AEIHTGHHSTIQYCDFSPYDHLAVIALSQYC-VELWNIDS-------R----------LKVADCR-G-HLSWVHGVMFSP 892 (1249)
T ss_dssp EEEECSSSSCCCEEEECSSTTEEEEECSSSC-EEEEETTT-------T----------EEEEEEC-C-CSSCEEEEEECT
T ss_pred eEEcCCCCCceEEEEEcCCCCEEEEEeCCCe-EEEEEcCC-------C----------ceeeecC-C-CccceEEEEECC
Confidence 8876 89999999999999999999999776 99999854 2 4555554 4 345799999999
Q ss_pred CCCEEEEEeCCCeEEEEeCCC
Q 003907 442 YSQWIAIVSSKGTCHVFVLSP 462 (787)
Q Consensus 442 Dg~~LAs~S~dgTVhIwdl~~ 462 (787)
||++|++++.|++|++|++..
T Consensus 893 dg~~l~s~s~dg~v~vw~~~~ 913 (1249)
T 3sfz_A 893 DGSSFLTASDDQTIRVWETKK 913 (1249)
T ss_dssp TSSEEEEEETTSCEEEEEHHH
T ss_pred CCCEEEEEeCCCeEEEEEccc
Confidence 999999999999999999863
No 70
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=99.85 E-value=6.6e-21 Score=204.75 Aligned_cols=238 Identities=13% Similarity=0.106 Sum_probs=155.7
Q ss_pred CCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCC-ceeEeeeeccCcEEEEEEecCCCCCCCCCCccccCcEE
Q 003907 56 KDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDAS-NFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFL 133 (787)
Q Consensus 56 ~~~v~wa~Fd~l~~~~~~~~~vL~lG~~~G-~qVWdv~~~~-~~~ells~~dg~V~~v~~lP~P~~~~~~d~F~~srpLL 133 (787)
++.|..+.|.. +++.|++|..+| ++|||++... .....+..|.++|.++++.|+. .+|
T Consensus 11 ~~~v~~~~~s~-------~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~-------------~~l 70 (377)
T 3dwl_C 11 PKPSYEHAFNS-------QRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKS-------------NRI 70 (377)
T ss_dssp SSCCSCCEECS-------SSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTT-------------CCE
T ss_pred CCcEEEEEECC-------CCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCC-------------CEE
Confidence 45566666753 467888886665 9999997532 5666778899999999999752 256
Q ss_pred EEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCe---EEEEEe-CCCcEEEEEecC--CeEEE
Q 003907 134 LVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHC---YEHVLR-FRSSVCMVRCSP--RIVAV 207 (787)
Q Consensus 134 avV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~---~v~tL~-f~s~V~sV~~s~--~~LaV 207 (787)
+..+. +++|++||+.+++ .+..+. +...|.++++++ ++|++
T Consensus 71 ~s~s~---------------------------------d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 117 (377)
T 3dwl_C 71 VTCSQ---------------------------------DRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAV 117 (377)
T ss_dssp EEEET---------------------------------TSSEEEC------CCCCEEECCCCSSCEEEEECCTTSSCCEE
T ss_pred EEEeC---------------------------------CCeEEEEEcCCCCceeeeeEecccCCceEEEEECCCCCEEEE
Confidence 55331 2589999999987 444443 456999999987 56666
Q ss_pred Ee-CCeEEEEECCCCce---eEEEEe-cCCcccCCCCccccccccceeEEcc--ceEEEecCCceecCcceeccccCCCC
Q 003907 208 GL-ATQIYCFDALTLEN---KFSVLT-YPVPQLAGQGAVGINVGYGPMAVGP--RWLAYASNTLLLSNSGRLSPQNLTPS 280 (787)
Q Consensus 208 ~~-~~~I~iwD~~T~e~---l~tl~t-~p~p~~~~~~~~~~~~~~~~lAlsp--r~LAyas~~~~l~~~g~~s~q~lt~~ 280 (787)
+. ++.|++||+.+.+. ...+.. |..+ ...++++| ++||++
T Consensus 118 ~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~-------------v~~~~~~~~~~~l~~~-------------------- 164 (377)
T 3dwl_C 118 GSGARVISVCYFEQENDWWVSKHLKRPLRST-------------ILSLDWHPNNVLLAAG-------------------- 164 (377)
T ss_dssp EESSSCEEECCC-----CCCCEEECSSCCSC-------------EEEEEECTTSSEEEEE--------------------
T ss_pred EecCCeEEEEEECCcccceeeeEeecccCCC-------------eEEEEEcCCCCEEEEE--------------------
Confidence 55 56899999988763 455544 3331 23445544 333333
Q ss_pred CcCCCcCCCCCceeEeeehhhhhhhhcccceeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECC---
Q 003907 281 GVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFV--- 357 (787)
Q Consensus 281 ~~s~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~--- 357 (787)
..||.|+|||+.
T Consensus 165 -----------------------------------------------------------------~~d~~i~iwd~~~~~ 179 (377)
T 3dwl_C 165 -----------------------------------------------------------------CADRKAYVLSAYVRD 179 (377)
T ss_dssp -----------------------------------------------------------------ESSSCEEEEEECCSS
T ss_pred -----------------------------------------------------------------eCCCEEEEEEEEecc
Confidence 345666666663
Q ss_pred ---------------CCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEE
Q 003907 358 ---------------TRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHL 422 (787)
Q Consensus 358 ---------------s~~~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l 422 (787)
.++.+..+ +|..+|.+++|+|+|++||+++.|| .|+|||+.. +. .....+
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~-~i~iwd~~~-------~~------~~~~~~ 244 (377)
T 3dwl_C 180 VDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGHDS-SVTIAYPSA-------PE------QPPRAL 244 (377)
T ss_dssp CC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEETTT-EEC-CEECS-------TT------SCEEEC
T ss_pred cCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeCCC-cEEEEECCC-------CC------Ccceee
Confidence 34567777 9999999999999999999999966 599999864 21 000113
Q ss_pred EEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEeCCC
Q 003907 423 YKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSP 462 (787)
Q Consensus 423 ~~l~rG~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~~ 462 (787)
..+. + +...|.+++|+|||++|+++++++.+ +|+...
T Consensus 245 ~~~~-~-~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~~ 281 (377)
T 3dwl_C 245 ITVK-L-SQLPLRSLLWANESAIVAAGYNYSPI-LLQGNE 281 (377)
T ss_dssp CCEE-C-SSSCEEEEEEEETTEEEEEESSSSEE-EECCCC
T ss_pred Eeec-C-CCCceEEEEEcCCCCEEEEEcCCcEE-EEEeCC
Confidence 3443 2 34569999999999999999877766 777764
No 71
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=99.85 E-value=9.2e-19 Score=184.93 Aligned_cols=245 Identities=11% Similarity=0.173 Sum_probs=174.4
Q ss_pred CCCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCceeEeeeeccCcEEEEEEecCCCCCCCCCCccccC
Q 003907 52 SEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLH 130 (787)
Q Consensus 52 ~~~~~~~v~wa~Fd~l~~~~~~~~~vL~lG~~~G-~qVWdv~~~~~~~ells~~dg~V~~v~~lP~P~~~~~~d~F~~sr 130 (787)
..+|.+.|..+.|.. +++.|++|..+| ++|||+.. +++...+. +.++|..+.+.|+.
T Consensus 70 ~~~h~~~v~~~~~~~-------~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~-~~~~v~~~~~~~~~------------- 127 (369)
T 3zwl_B 70 LDGHTGTIWSIDVDC-------FTKYCVTGSADYSIKLWDVSN-GQCVATWK-SPVPVKRVEFSPCG------------- 127 (369)
T ss_dssp ECCCSSCEEEEEECT-------TSSEEEEEETTTEEEEEETTT-CCEEEEEE-CSSCEEEEEECTTS-------------
T ss_pred hhhcCCcEEEEEEcC-------CCCEEEEEeCCCeEEEEECCC-CcEEEEee-cCCCeEEEEEccCC-------------
Confidence 345778888888863 356777777776 99999965 55555555 77899999998742
Q ss_pred cEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeE-----------EEEEeC-CC--cEE
Q 003907 131 PFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCY-----------EHVLRF-RS--SVC 196 (787)
Q Consensus 131 pLLavV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~-----------v~tL~f-~s--~V~ 196 (787)
.+|++...+. . ..++.|++||+.+++. +..+.. .. .|.
T Consensus 128 ~~l~~~~~~~--~--------------------------~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (369)
T 3zwl_B 128 NYFLAILDNV--M--------------------------KNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAAT 179 (369)
T ss_dssp SEEEEEECCB--T--------------------------TBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEE
T ss_pred CEEEEecCCc--c--------------------------CCCCEEEEEEecCCccceeecccccceeeeccCCcCcccee
Confidence 2565433210 0 0236899999987642 222322 22 899
Q ss_pred EEEecC--CeEEEEe-CCeEEEEECCC-CceeEEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCccee
Q 003907 197 MVRCSP--RIVAVGL-ATQIYCFDALT-LENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRL 272 (787)
Q Consensus 197 sV~~s~--~~LaV~~-~~~I~iwD~~T-~e~l~tl~t~p~p~~~~~~~~~~~~~~~~lAlspr~LAyas~~~~l~~~g~~ 272 (787)
.+++++ +.|+++. ++.|++||+.+ .+.+..+..+..+ ...++++| +.
T Consensus 180 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~-------------v~~~~~~~-------~~--------- 230 (369)
T 3zwl_B 180 VAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKS-------------ISDMQFSP-------DL--------- 230 (369)
T ss_dssp EEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSC-------------EEEEEECT-------TS---------
T ss_pred EEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCc-------------eeEEEECC-------CC---------
Confidence 999987 5777765 56799999998 6666666654432 22333332 10
Q ss_pred ccccCCCCCcCCCcCCCCCceeEeeehhhhhhhhcccceeecccccccCCCCCCCCcccCCccccccccccccCCCceEE
Q 003907 273 SPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVV 352 (787)
Q Consensus 273 s~q~lt~~~~s~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~ 352 (787)
.. ++.+..+|.|+
T Consensus 231 ------------------~~-------------------------------------------------l~~~~~d~~i~ 243 (369)
T 3zwl_B 231 ------------------TY-------------------------------------------------FITSSRDTNSF 243 (369)
T ss_dssp ------------------SE-------------------------------------------------EEEEETTSEEE
T ss_pred ------------------CE-------------------------------------------------EEEecCCceEE
Confidence 00 11234578999
Q ss_pred EEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCC-------------EEEEEeCCCCcccCCCCCCccccCCcc
Q 003907 353 VKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGN-------------NINIFRIMPSCMRSGSGNHKYDWNSSH 419 (787)
Q Consensus 353 IwDl~s~~~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~-------------~IrVWdi~~~~~~~~~g~~~~~~~~s~ 419 (787)
+||+.+++.+..+. |..++.+++|+|+|++|++++.++. .+++||+.. +
T Consensus 244 v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~-------~---------- 305 (369)
T 3zwl_B 244 LVDVSTLQVLKKYE-TDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIF-------E---------- 305 (369)
T ss_dssp EEETTTCCEEEEEE-CSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTT-------C----------
T ss_pred EEECCCCceeeeec-CCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCC-------C----------
Confidence 99999999988887 7789999999999999999998763 589999854 2
Q ss_pred eEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEeCCC
Q 003907 420 VHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSP 462 (787)
Q Consensus 420 ~~l~~l~rG~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~~ 462 (787)
..+..+. + +...|.+++|+||+++|++++.||+|+||+++.
T Consensus 306 ~~~~~~~-~-~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~ 346 (369)
T 3zwl_B 306 EEIGRVQ-G-HFGPLNTVAISPQGTSYASGGEDGFIRLHHFEK 346 (369)
T ss_dssp CEEEEEE-C-CSSCEEEEEECTTSSEEEEEETTSEEEEEEECH
T ss_pred cchhhee-c-ccCcEEEEEECCCCCEEEEEcCCCeEEEEECcc
Confidence 3555554 3 345799999999999999999999999999975
No 72
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=99.85 E-value=3e-19 Score=211.44 Aligned_cols=253 Identities=13% Similarity=0.071 Sum_probs=189.4
Q ss_pred CCCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCceeEeeeeccCcEEEEEEecCCCCCCCCCCccccC
Q 003907 52 SEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLH 130 (787)
Q Consensus 52 ~~~~~~~v~wa~Fd~l~~~~~~~~~vL~lG~~~G-~qVWdv~~~~~~~ells~~dg~V~~v~~lP~P~~~~~~d~F~~sr 130 (787)
..+|.+.|..+.|.. +++.|++|..+| ++|||+.. +.....+..|.++|.++.+.|+ .
T Consensus 9 ~~~h~~~v~~i~~sp-------~~~~la~~~~~g~v~iwd~~~-~~~~~~~~~~~~~v~~~~~s~~-------------~ 67 (814)
T 3mkq_A 9 FSNRSDRVKGIDFHP-------TEPWVLTTLYSGRVEIWNYET-QVEVRSIQVTETPVRAGKFIAR-------------K 67 (814)
T ss_dssp EEEECSCEEEEEECS-------SSSEEEEEETTSEEEEEETTT-TEEEEEEECCSSCEEEEEEEGG-------------G
T ss_pred eecCCCceEEEEECC-------CCCEEEEEeCCCEEEEEECCC-CceEEEEecCCCcEEEEEEeCC-------------C
Confidence 456888999999974 467888888877 99999954 6677788889999999999974 2
Q ss_pred cEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeC-CCcEEEEEecC--CeEEE
Q 003907 131 PFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRF-RSSVCMVRCSP--RIVAV 207 (787)
Q Consensus 131 pLLavV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~v~tL~f-~s~V~sV~~s~--~~LaV 207 (787)
.+|++.+. +++|++||+.+++.+.++.. ...|.++++++ +.|++
T Consensus 68 ~~l~~~~~---------------------------------dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~ 114 (814)
T 3mkq_A 68 NWIIVGSD---------------------------------DFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLS 114 (814)
T ss_dssp TEEEEEET---------------------------------TSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEE
T ss_pred CEEEEEeC---------------------------------CCeEEEEECCCCcEEEEEecCCCCEEEEEEeCCCCEEEE
Confidence 36665321 25899999999999999985 46899999988 56777
Q ss_pred Ee-CCeEEEEECCCC-ceeEEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCcceeccccCCCCCcCCC
Q 003907 208 GL-ATQIYCFDALTL-ENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPS 285 (787)
Q Consensus 208 ~~-~~~I~iwD~~T~-e~l~tl~t~p~p~~~~~~~~~~~~~~~~lAlspr~LAyas~~~~l~~~g~~s~q~lt~~~~s~s 285 (787)
+. ++.|++||+.+. +....+..|..+ ...++++| .+
T Consensus 115 ~~~dg~i~vw~~~~~~~~~~~~~~~~~~-------------v~~~~~~p-------~~---------------------- 152 (814)
T 3mkq_A 115 GSDDLTVKLWNWENNWALEQTFEGHEHF-------------VMCVAFNP-------KD---------------------- 152 (814)
T ss_dssp EETTSEEEEEEGGGTSEEEEEEECCSSC-------------EEEEEEET-------TE----------------------
T ss_pred EcCCCEEEEEECCCCceEEEEEcCCCCc-------------EEEEEEEc-------CC----------------------
Confidence 66 458999999887 444445444432 12233322 00
Q ss_pred cCCCCCceeEeeehhhhhhhhcccceeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECCCCcEEEEe
Q 003907 286 TSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQF 365 (787)
Q Consensus 286 ~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~v~~~ 365 (787)
+. .++.+..+|.|++||+.+++....+
T Consensus 153 -----~~------------------------------------------------~l~~~~~dg~v~vwd~~~~~~~~~~ 179 (814)
T 3mkq_A 153 -----PS------------------------------------------------TFASGCLDRTVKVWSLGQSTPNFTL 179 (814)
T ss_dssp -----EE------------------------------------------------EEEEEETTSEEEEEETTCSSCSEEE
T ss_pred -----CC------------------------------------------------EEEEEeCCCeEEEEECCCCcceeEE
Confidence 00 0112346889999999988877777
Q ss_pred ccCC-CCeEEEEECC--CCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccC
Q 003907 366 KAHT-SPISALCFDP--SGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHY 442 (787)
Q Consensus 366 ~aH~-~pIsaLaFSp--dG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpD 442 (787)
..|. .+|.+++|+| +|.+|++++.+| .|++||+.. + ..+..+. + +...|.+++|+||
T Consensus 180 ~~~~~~~v~~~~~~~~~~~~~l~~~~~dg-~i~~~d~~~-------~----------~~~~~~~-~-~~~~v~~~~~~~~ 239 (814)
T 3mkq_A 180 TTGQERGVNYVDYYPLPDKPYMITASDDL-TIKIWDYQT-------K----------SCVATLE-G-HMSNVSFAVFHPT 239 (814)
T ss_dssp ECCCTTCCCEEEECCSTTCCEEEEECTTS-EEEEEETTT-------T----------EEEEEEE-C-CSSCEEEEEECSS
T ss_pred ecCCCCCEEEEEEEECCCCCEEEEEeCCC-EEEEEECCC-------C----------cEEEEEc-C-CCCCEEEEEEcCC
Confidence 7655 8999999999 999999999966 599999854 2 3555554 3 3357999999999
Q ss_pred CCEEEEEeCCCeEEEEeCCCCCCcccccccc
Q 003907 443 SQWIAIVSSKGTCHVFVLSPFGGDSGFQTLS 473 (787)
Q Consensus 443 g~~LAs~S~dgTVhIwdl~~~gg~~~~~~H~ 473 (787)
+++|++++.||+|++||+........+..|.
T Consensus 240 ~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~ 270 (814)
T 3mkq_A 240 LPIIISGSEDGTLKIWNSSTYKVEKTLNVGL 270 (814)
T ss_dssp SSEEEEEETTSCEEEEETTTCSEEEEECCSS
T ss_pred CCEEEEEeCCCeEEEEECCCCcEEEEeecCC
Confidence 9999999999999999998755444454443
No 73
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=99.85 E-value=1.3e-18 Score=192.86 Aligned_cols=239 Identities=13% Similarity=0.136 Sum_probs=177.1
Q ss_pred CCCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCceeEeeeeccCcEEEEEEecCCCCCCCCCCccccC
Q 003907 52 SEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLH 130 (787)
Q Consensus 52 ~~~~~~~v~wa~Fd~l~~~~~~~~~vL~lG~~~G-~qVWdv~~~~~~~ells~~dg~V~~v~~lP~P~~~~~~d~F~~sr 130 (787)
..+|++.|..+.|.. .+ .|++|..+| ++|||++ .++....+..|.++|.++.+.|.| ..
T Consensus 158 ~~~h~~~V~~l~~~~-------~~-~l~s~s~dg~i~vwd~~-~~~~~~~~~~h~~~v~~l~~~~~~-----------~~ 217 (464)
T 3v7d_B 158 LSGHDGGVWALKYAH-------GG-ILVSGSTDRTVRVWDIK-KGCCTHVFEGHNSTVRCLDIVEYK-----------NI 217 (464)
T ss_dssp ECCCSSCEEEEEECS-------TT-EEEEEETTSCEEEEETT-TTEEEEEECCCSSCEEEEEEEESS-----------SC
T ss_pred EeCCCcCEEEEEEcC-------CC-EEEEEeCCCCEEEEECC-CCcEEEEECCCCCccEEEEEecCC-----------CC
Confidence 346888888888853 13 677777766 9999996 466777888899999999999643 22
Q ss_pred cEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeE-----------------------EE
Q 003907 131 PFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCY-----------------------EH 187 (787)
Q Consensus 131 pLLavV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~-----------------------v~ 187 (787)
.+|++.+. +++|++||+++++. +.
T Consensus 218 ~~l~s~s~---------------------------------d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (464)
T 3v7d_B 218 KYIVTGSR---------------------------------DNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVG 264 (464)
T ss_dssp EEEEEEET---------------------------------TSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEE
T ss_pred CEEEEEcC---------------------------------CCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEE
Confidence 35554321 25899999998763 44
Q ss_pred EEeC-CCcEEEEEecCCeEEEEe-CCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEccceEEEecCCce
Q 003907 188 VLRF-RSSVCMVRCSPRIVAVGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLL 265 (787)
Q Consensus 188 tL~f-~s~V~sV~~s~~~LaV~~-~~~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~~~~~lAlspr~LAyas~~~~ 265 (787)
.+.. ...|.++..+.++|+++. ++.|++||+.+++.+.++..|..+ ...++++| +.
T Consensus 265 ~~~~~~~~v~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~-------------v~~~~~~~-------~~-- 322 (464)
T 3v7d_B 265 VLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDR-------------IYSTIYDH-------ER-- 322 (464)
T ss_dssp EECCCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSC-------------EEEEEEET-------TT--
T ss_pred EccCccceEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCC-------------EEEEEEcC-------CC--
Confidence 4443 358889988888888876 567999999999988887665442 12233322 10
Q ss_pred ecCcceeccccCCCCCcCCCcCCCCCceeEeeehhhhhhhhcccceeecccccccCCCCCCCCcccCCcccccccccccc
Q 003907 266 LSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADM 345 (787)
Q Consensus 266 l~~~g~~s~q~lt~~~~s~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~ 345 (787)
. .++.+
T Consensus 323 -------------------------~-------------------------------------------------~l~sg 328 (464)
T 3v7d_B 323 -------------------------K-------------------------------------------------RCISA 328 (464)
T ss_dssp -------------------------T-------------------------------------------------EEEEE
T ss_pred -------------------------C-------------------------------------------------EEEEE
Confidence 0 01134
Q ss_pred CCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEE
Q 003907 346 DNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKL 425 (787)
Q Consensus 346 ~~dG~V~IwDl~s~~~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l 425 (787)
..||.|+|||+.+++.+..+.+|..+|.+++|+ +.+|++++.||+ |+|||+.. + .....+
T Consensus 329 ~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~-v~vwd~~~-------~----------~~~~~~ 388 (464)
T 3v7d_B 329 SMDTTIRIWDLENGELMYTLQGHTALVGLLRLS--DKFLVSAAADGS-IRGWDAND-------Y----------SRKFSY 388 (464)
T ss_dssp ETTSCEEEEETTTTEEEEEECCCSSCEEEEEEC--SSEEEEEETTSE-EEEEETTT-------C----------CEEEEE
T ss_pred eCCCcEEEEECCCCcEEEEEeCCCCcEEEEEEc--CCEEEEEeCCCc-EEEEECCC-------C----------ceeeee
Confidence 568999999999999999999999999999997 589999999765 99999854 2 244444
Q ss_pred ecccccccEEEEEEccCCCEEEEEeCCCeEEEEeCCCC
Q 003907 426 HRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPF 463 (787)
Q Consensus 426 ~rG~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~~~ 463 (787)
. +...+..++|++|+++|++++ ||+|+|||+...
T Consensus 389 ~---~~~~~~~~~~~~~~~~l~~~~-dg~i~iwd~~~g 422 (464)
T 3v7d_B 389 H---HTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSG 422 (464)
T ss_dssp E---CTTCCCEEEEEECSSEEEEEE-TTEEEEEETTTC
T ss_pred c---CCCCccEEEEEeCCCEEEEec-CCeEEEEECCCC
Confidence 3 234577899999999999999 899999999863
No 74
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=99.84 E-value=2.2e-19 Score=189.28 Aligned_cols=256 Identities=12% Similarity=0.029 Sum_probs=170.6
Q ss_pred CCCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCc--eeEeeeeccCcEEEEEEecCCCCCCCCCCccc
Q 003907 52 SEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASN--FNELVSKRDGPVSFLQMQPFPVKDDGCEGFRK 128 (787)
Q Consensus 52 ~~~~~~~v~wa~Fd~l~~~~~~~~~vL~lG~~~G-~qVWdv~~~~~--~~ells~~dg~V~~v~~lP~P~~~~~~d~F~~ 128 (787)
..+|++.|..+.|.. +++.|++|..+| ++|||++.... ....+..|.++|.++.+.|+
T Consensus 7 ~~~h~~~v~~~~~s~-------~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~------------ 67 (342)
T 1yfq_A 7 EQAPKDYISDIKIIP-------SKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDN------------ 67 (342)
T ss_dssp SSCCSSCEEEEEEEG-------GGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEES------------
T ss_pred ccCCCCcEEEEEEcC-------CCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCC------------
Confidence 457899999999985 255777777766 99999975431 12334478899999999974
Q ss_pred cCc-EEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEEC-CCCeEEEEEe---CCCcEEEEEecC-
Q 003907 129 LHP-FLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSF-QSHCYEHVLR---FRSSVCMVRCSP- 202 (787)
Q Consensus 129 srp-LLavV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVrlWdl-ktg~~v~tL~---f~s~V~sV~~s~- 202 (787)
.. +|++.+. +++|++||+ .+++. ..+. +...|.++++++
T Consensus 68 -~~~~l~~~~~---------------------------------dg~i~~wd~~~~~~~-~~~~~~~~~~~v~~l~~~~~ 112 (342)
T 1yfq_A 68 -TDLQIYVGTV---------------------------------QGEILKVDLIGSPSF-QALTNNEANLGICRICKYGD 112 (342)
T ss_dssp -SSEEEEEEET---------------------------------TSCEEEECSSSSSSE-EECBSCCCCSCEEEEEEETT
T ss_pred -CCcEEEEEcC---------------------------------CCeEEEEEeccCCce-EeccccCCCCceEEEEeCCC
Confidence 23 4544221 258999999 88876 4444 557999999985
Q ss_pred CeEEEEe-CCeEEEEECCC---------CceeEEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCccee
Q 003907 203 RIVAVGL-ATQIYCFDALT---------LENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRL 272 (787)
Q Consensus 203 ~~LaV~~-~~~I~iwD~~T---------~e~l~tl~t~p~p~~~~~~~~~~~~~~~~lAlspr~LAyas~~~~l~~~g~~ 272 (787)
+.|+++. ++.|++||+.+ ++.+.++. ++.+ ...++++|..
T Consensus 113 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~-------------v~~~~~~~~~---------------- 162 (342)
T 1yfq_A 113 DKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK-VKNK-------------IFTMDTNSSR---------------- 162 (342)
T ss_dssp TEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS-SCCC-------------EEEEEECSSE----------------
T ss_pred CEEEEEcCCCeEEEEcccccccccccccCCeeeEEe-eCCc-------------eEEEEecCCc----------------
Confidence 6677654 56899999876 33222111 1110 1112221111
Q ss_pred ccccCCCCCcCCCcCCCCCceeEeeehhhhhhhhcccceeecccccccCCCCCCCCcccCCccccccccccccCCCceEE
Q 003907 273 SPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVV 352 (787)
Q Consensus 273 s~q~lt~~~~s~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~ 352 (787)
++.+..+|.|+
T Consensus 163 ---------------------------------------------------------------------l~~~~~d~~i~ 173 (342)
T 1yfq_A 163 ---------------------------------------------------------------------LIVGMNNSQVQ 173 (342)
T ss_dssp ---------------------------------------------------------------------EEEEESTTEEE
T ss_pred ---------------------------------------------------------------------EEEEeCCCeEE
Confidence 12345688999
Q ss_pred EEECCC-Cc--EEEEeccCCCCeEEEEECC-CCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecc
Q 003907 353 VKDFVT-RA--IISQFKAHTSPISALCFDP-SGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRG 428 (787)
Q Consensus 353 IwDl~s-~~--~v~~~~aH~~pIsaLaFSp-dG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG 428 (787)
+||+.+ +. .......|..+|.+++|+| +|++|++++.+| .|+||++... +.. .....+..+...
T Consensus 174 i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg-~i~i~~~~~~------~~~-----~~~~~~~~~~~~ 241 (342)
T 1yfq_A 174 WFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDG-RVAVEFFDDQ------GDD-----YNSSKRFAFRCH 241 (342)
T ss_dssp EEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTS-EEEEEECCTT------CCS-----TTCTTCEEEECC
T ss_pred EEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCC-cEEEEEEcCC------Ccc-----cccccceeeecc
Confidence 999988 44 3345567899999999999 999999999966 5999998542 000 000122333321
Q ss_pred c-------ccccEEEEEEccCCCEEEEEeCCCeEEEEeCCCCCCccccccc
Q 003907 429 I-------TSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQTL 472 (787)
Q Consensus 429 ~-------~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~~~gg~~~~~~H 472 (787)
. +...|.+++|+||+++|++++.||+|+|||+........+..|
T Consensus 242 ~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~ 292 (342)
T 1yfq_A 242 RLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKF 292 (342)
T ss_dssp CCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCC
T ss_pred cccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhhcc
Confidence 1 1237999999999999999999999999999865433334443
No 75
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=99.84 E-value=7.4e-20 Score=198.83 Aligned_cols=113 Identities=11% Similarity=0.115 Sum_probs=89.1
Q ss_pred ccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCC-CEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEE
Q 003907 344 DMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSG-TLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHL 422 (787)
Q Consensus 344 s~~~dG~V~IwDl~s~~~v~~~~aH~~pIsaLaFSpdG-~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l 422 (787)
+++.||+|+|||+.+++.+..+.+|..+|.+++|+|++ .+|+|++.|++ |+|||+.. + ..+
T Consensus 144 sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~-v~iwd~~~-------~----------~~~ 205 (344)
T 4gqb_B 144 SGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNR-ILLWDTRC-------P----------KPA 205 (344)
T ss_dssp EEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSC-EEEEETTS-------S----------SCE
T ss_pred EEeCCCeEEEEECCCCcEEEEEcCcCCceEEEEecCCCCCceeeeccccc-cccccccc-------c----------cee
Confidence 34568999999999999999999999999999999998 48899999776 99999964 2 234
Q ss_pred EEEecccccccEEEEEEccC-CCEEEEEeCCCeEEEEeCCCCCCccccccccC
Q 003907 423 YKLHRGITSATIQDICFSHY-SQWIAIVSSKGTCHVFVLSPFGGDSGFQTLSS 474 (787)
Q Consensus 423 ~~l~rG~~~a~I~slaFSpD-g~~LAs~S~dgTVhIwdl~~~gg~~~~~~H~~ 474 (787)
.++....+...+.+++|+|+ +++||+++.||+|+|||+........+..|..
T Consensus 206 ~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~~~h~~ 258 (344)
T 4gqb_B 206 SQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAVHSQ 258 (344)
T ss_dssp EECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEEEECCSS
T ss_pred eeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEEEcCCCC
Confidence 44432223346899999985 57899999999999999987766667777754
No 76
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=99.84 E-value=6.6e-19 Score=200.35 Aligned_cols=249 Identities=12% Similarity=0.101 Sum_probs=185.1
Q ss_pred CCCCCCcEEEEEEeeccCCCCCCCeEEEEEecCcEEEEEccCCC----ceeEeeeeccCc-EEEEEEec--CCCCCCCCC
Q 003907 52 SEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNGFQVLDVEDAS----NFNELVSKRDGP-VSFLQMQP--FPVKDDGCE 124 (787)
Q Consensus 52 ~~~~~~~v~wa~Fd~l~~~~~~~~~vL~lG~~~G~qVWdv~~~~----~~~ells~~dg~-V~~v~~lP--~P~~~~~~d 124 (787)
...+++.|..+.|.. +++.|++|..+.++|||++. + +....+..|.++ |.++++.| +.
T Consensus 14 ~~~~~~~v~~~~~sp-------dg~~l~~~~~~~v~v~~~~~-~~~~~~~~~~~~~h~~~~v~~~~~sp~~~~------- 78 (615)
T 1pgu_A 14 PSTQRNFTTHLSYDP-------TTNAIAYPCGKSAFVRCLDD-GDSKVPPVVQFTGHGSSVVTTVKFSPIKGS------- 78 (615)
T ss_dssp CCCCTTCCCCCEEET-------TTTEEEEEETTEEEEEECCS-SCCSSCSEEEECTTTTSCEEEEEECSSTTC-------
T ss_pred CCCccCceeEEEECC-------CCCEEEEecCCeEEEEECCC-CCCccccceEEecCCCceEEEEEECcCCCC-------
Confidence 446788899888874 46788888877899999974 4 566778889999 99999997 42
Q ss_pred CccccCcEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCC--------eEEEEEe-CCCcE
Q 003907 125 GFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSH--------CYEHVLR-FRSSV 195 (787)
Q Consensus 125 ~F~~srpLLavV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg--------~~v~tL~-f~s~V 195 (787)
.+||+.+. +++|++||+.++ +.+.++. +...|
T Consensus 79 ------~~l~s~~~---------------------------------dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v 119 (615)
T 1pgu_A 79 ------QYLCSGDE---------------------------------SGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPI 119 (615)
T ss_dssp ------CEEEEEET---------------------------------TSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCE
T ss_pred ------CEEEEecC---------------------------------CCEEEEEeCCCCcccccccccccchhhcccccE
Confidence 26665221 258999999855 6777776 45699
Q ss_pred EEEEecC--CeEEEEeCC-----eEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecC
Q 003907 196 CMVRCSP--RIVAVGLAT-----QIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSN 268 (787)
Q Consensus 196 ~sV~~s~--~~LaV~~~~-----~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~~~~~lAlspr~LAyas~~~~l~~ 268 (787)
.++++++ ++|+++..+ .|++|| +++.+.++..|..+ ...++++| +.
T Consensus 120 ~~~~~s~~~~~l~~~~~~~~~~~~v~~~d--~~~~~~~~~~~~~~-------------v~~~~~~~-------~~----- 172 (615)
T 1pgu_A 120 SDISWDFEGRRLCVVGEGRDNFGVFISWD--SGNSLGEVSGHSQR-------------INACHLKQ-------SR----- 172 (615)
T ss_dssp EEEEECTTSSEEEEEECCSSCSEEEEETT--TCCEEEECCSCSSC-------------EEEEEECS-------SS-----
T ss_pred EEEEEeCCCCEEEEeccCCCCccEEEEEE--CCCcceeeecCCcc-------------EEEEEECC-------CC-----
Confidence 9999988 577776654 688888 56666665544432 12233322 10
Q ss_pred cceeccccCCCCCcCCCcCCCCCceeEeeehhhhhhhhcccceeecccccccCCCCCCCCcccCCccccccccccccCCC
Q 003907 269 SGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNA 348 (787)
Q Consensus 269 ~g~~s~q~lt~~~~s~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~d 348 (787)
.. .++.+..+
T Consensus 173 ----------------------~~------------------------------------------------~l~~~~~d 182 (615)
T 1pgu_A 173 ----------------------PM------------------------------------------------RSMTVGDD 182 (615)
T ss_dssp ----------------------SC------------------------------------------------EEEEEETT
T ss_pred ----------------------Cc------------------------------------------------EEEEEeCC
Confidence 00 01134568
Q ss_pred ceEEEEECCCCcEEEEeccCCC---CeEEEEECCC-CCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEE
Q 003907 349 GIVVVKDFVTRAIISQFKAHTS---PISALCFDPS-GTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYK 424 (787)
Q Consensus 349 G~V~IwDl~s~~~v~~~~aH~~---pIsaLaFSpd-G~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~ 424 (787)
|.|++||+.+++.+..+.+|.. +|.+++|+|+ |++|++++.||. |+|||+.. + ..+..
T Consensus 183 ~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~-i~vwd~~~-------~----------~~~~~ 244 (615)
T 1pgu_A 183 GSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRK-ISCFDGKS-------G----------EFLKY 244 (615)
T ss_dssp TEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCC-EEEEETTT-------C----------CEEEE
T ss_pred CcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCe-EEEEECCC-------C----------CEeEE
Confidence 9999999999999999999999 9999999999 999999999776 99999854 2 35555
Q ss_pred Eec---ccccccEEEEEEccCCCEEEEEeCCCeEEEEeCCCCCCcccccc
Q 003907 425 LHR---GITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQT 471 (787)
Q Consensus 425 l~r---G~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~~~gg~~~~~~ 471 (787)
+.. + +...|.+++|+ |+++|++++.|++|++||+........+..
T Consensus 245 ~~~~~~~-~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~ 292 (615)
T 1pgu_A 245 IEDDQEP-VQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTL 292 (615)
T ss_dssp CCBTTBC-CCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEEC
T ss_pred ecccccc-cCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcC
Confidence 533 3 44679999999 999999999999999999986543333333
No 77
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=99.84 E-value=2.2e-19 Score=199.27 Aligned_cols=285 Identities=12% Similarity=0.070 Sum_probs=180.3
Q ss_pred CCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCceeEe--eeeccCcEEEEEEecCCCCCCCCCCccccC
Q 003907 54 DLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNEL--VSKRDGPVSFLQMQPFPVKDDGCEGFRKLH 130 (787)
Q Consensus 54 ~~~~~v~wa~Fd~l~~~~~~~~~vL~lG~~~G-~qVWdv~~~~~~~el--ls~~dg~V~~v~~lP~P~~~~~~d~F~~sr 130 (787)
.+.+.|+.+.|.- ..+++|++|..+| ++|||++... ...+ +..|.++|.+|+|.|. .+.
T Consensus 117 ~~~~~V~~l~~~P------~~~~~lasGs~dg~i~lWd~~~~~-~~~~~~~~gH~~~V~~l~f~p~----------~~~- 178 (435)
T 4e54_B 117 PFDRRATSLAWHP------THPSTVAVGSKGGDIMLWNFGIKD-KPTFIKGIGAGGSITGLKFNPL----------NTN- 178 (435)
T ss_dssp ECSSCEEEEEECS------SCTTCEEEEETTSCEEEECSSCCS-CCEEECCCSSSCCCCEEEECSS----------CTT-
T ss_pred CCCCCEEEEEEeC------CCCCEEEEEeCCCEEEEEECCCCC-ceeEEEccCCCCCEEEEEEeCC----------CCC-
Confidence 4567799999962 2356899999887 9999996533 3333 4568899999999873 112
Q ss_pred cEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCC---CcEEEEEecC--CeE
Q 003907 131 PFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFR---SSVCMVRCSP--RIV 205 (787)
Q Consensus 131 pLLavV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~v~tL~f~---s~V~sV~~s~--~~L 205 (787)
+|+.++ .+++|+|||++++........+ ..+.++++++ ++|
T Consensus 179 -~l~s~s---------------------------------~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 224 (435)
T 4e54_B 179 -QFYASS---------------------------------MEGTTRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMV 224 (435)
T ss_dssp -EEEEEC---------------------------------SSSCEEEEETTSCEEEEEECCSSCSCCCCCEEEETTTTEE
T ss_pred -EEEEEe---------------------------------CCCEEEEeeccCCceeEEeccCCCCccEEEEEECCCCCEE
Confidence 554422 1368999999876654444332 2567888876 678
Q ss_pred EEEe-CCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEcc---ceEEEecCCceecCcceeccccCCCCC
Q 003907 206 AVGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP---RWLAYASNTLLLSNSGRLSPQNLTPSG 281 (787)
Q Consensus 206 aV~~-~~~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~~~~~lAlsp---r~LAyas~~~~l~~~g~~s~q~lt~~~ 281 (787)
+++. ++.|++||+.+ +.+.++..|..+ ...++++| .+||.++.+.. ...|+..+...
T Consensus 225 ~~g~~dg~i~~wd~~~-~~~~~~~~h~~~-------------v~~v~~~p~~~~~~~s~s~d~~-----v~iwd~~~~~~ 285 (435)
T 4e54_B 225 VTGDNVGNVILLNMDG-KELWNLRMHKKK-------------VTHVALNPCCDWFLATASVDQT-----VKIWDLRQVRG 285 (435)
T ss_dssp EEECSSSBEEEEESSS-CBCCCSBCCSSC-------------EEEEEECTTCSSEEEEEETTSB-----CCEEETTTCCS
T ss_pred EEEeCCCcEeeeccCc-ceeEEEecccce-------------EEeeeecCCCceEEEEecCcce-----eeEEecccccc
Confidence 8765 46799999864 455666555543 35678887 46777765421 11233222110
Q ss_pred cCCCcCCCCCceeEeeehhhhhhhhcccceeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECCCCcE
Q 003907 282 VSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAI 361 (787)
Q Consensus 282 ~s~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~ 361 (787)
..... ....+ ......+.++++++ .+++++.||.|+|||+.++..
T Consensus 286 ~~~~~-------------------------~~~~h------~~~v~~~~~spdg~----~l~s~~~D~~i~iwd~~~~~~ 330 (435)
T 4e54_B 286 KASFL-------------------------YSLPH------RHPVNAACFSPDGA----RLLTTDQKSEIRVYSASQWDC 330 (435)
T ss_dssp SSCCS-------------------------BCCBC------SSCEEECCBCTTSS----EEEEEESSSCEEEEESSSSSS
T ss_pred cceEE-------------------------Eeeec------cccccceeECCCCC----eeEEEcCCCEEEEEECCCCcc
Confidence 00000 00000 01112233344332 355778999999999999988
Q ss_pred EEEeccCCC------CeEEEEECCCCCEEEEEEc-----------CCCEEEEEeCCCCcccCCCCCCccccCCcceEEEE
Q 003907 362 ISQFKAHTS------PISALCFDPSGTLLVTASV-----------YGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYK 424 (787)
Q Consensus 362 v~~~~aH~~------pIsaLaFSpdG~lLATaS~-----------dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~ 424 (787)
...+..|.. .+...+|+|++.++++++. +++.|+|||+.. | ..+..
T Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~-------g----------~~~~~ 393 (435)
T 4e54_B 331 PLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNS-------G----------KMMCQ 393 (435)
T ss_dssp EEEECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSS-------C----------CEEEE
T ss_pred ceEEecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCC-------C----------cEEEE
Confidence 888877653 2334567777777776643 345699999854 3 46666
Q ss_pred EecccccccEEEE-EEccCCCEEEEEeCCCeEEEEeCCCC
Q 003907 425 LHRGITSATIQDI-CFSHYSQWIAIVSSKGTCHVFVLSPF 463 (787)
Q Consensus 425 l~rG~~~a~I~sl-aFSpDg~~LAs~S~dgTVhIwdl~~~ 463 (787)
+..++ ...|.++ +|||||++||+++ |++|+||++++.
T Consensus 394 l~~~~-~~~v~s~~~fspdg~~lasg~-d~~i~iW~~~~g 431 (435)
T 4e54_B 394 LYDPE-SSGISSLNEFNPMGDTLASAM-GYHILIWSQQEA 431 (435)
T ss_dssp ECCSS-CCCCCCEEEECTTSSCEEEEC-SSEEEECCCC--
T ss_pred EeCCC-CCcEEEEEEECCCCCEEEEEc-CCcEEEEECCcC
Confidence 65443 3457776 6999999999886 789999999764
No 78
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.84 E-value=3e-19 Score=195.13 Aligned_cols=229 Identities=14% Similarity=0.120 Sum_probs=162.5
Q ss_pred EEEEEecCc-EEEEEccCCCce---eEeeeeccCcEEEEEEecCCCCCCCCCCccccCcEEEEEEcCCCCCCCCCCCcCC
Q 003907 77 VLLLGYQNG-FQVLDVEDASNF---NELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSH 152 (787)
Q Consensus 77 vL~lG~~~G-~qVWdv~~~~~~---~ells~~dg~V~~v~~lP~P~~~~~~d~F~~srpLLavV~~d~~~~~~~~~~~~~ 152 (787)
+++.|+.+| ++|||++..+.. ...+..|.++|.++++.|. .+ .+|++.+.
T Consensus 49 ~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~----------~~--~~l~s~s~-------------- 102 (402)
T 2aq5_A 49 LICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPH----------ND--NVIASGSE-------------- 102 (402)
T ss_dssp EEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTT----------CT--TEEEEEET--------------
T ss_pred EEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCC----------CC--CEEEEEeC--------------
Confidence 444456555 999999765433 3356778999999999872 12 26665321
Q ss_pred CCCcccCCcCCCCCCCCCCCCEEEEEECCCC-------eEEEEEeC-CCcEEEEEecC---CeEEEEe-CCeEEEEECCC
Q 003907 153 LGGVRDGMMDSQSGNCVNSPTAVRFYSFQSH-------CYEHVLRF-RSSVCMVRCSP---RIVAVGL-ATQIYCFDALT 220 (787)
Q Consensus 153 ~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg-------~~v~tL~f-~s~V~sV~~s~---~~LaV~~-~~~I~iwD~~T 220 (787)
+++|+|||+.++ +.+.++.. ...|.+|++++ ++|+++. ++.|++||+.+
T Consensus 103 -------------------dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~ 163 (402)
T 2aq5_A 103 -------------------DCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGT 163 (402)
T ss_dssp -------------------TSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTT
T ss_pred -------------------CCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCC
Confidence 268999999998 66778875 46899999987 3677655 56799999999
Q ss_pred CceeEEE--EecCCcccCCCCccccccccceeEEccceEEEecCCceecCcceeccccCCCCCcCCCcCCCCCceeEeee
Q 003907 221 LENKFSV--LTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYA 298 (787)
Q Consensus 221 ~e~l~tl--~t~p~p~~~~~~~~~~~~~~~~lAlspr~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~sp~~g~lva~~a 298 (787)
++.+.++ ..|..+ ...++++| +. .
T Consensus 164 ~~~~~~~~~~~~~~~-------------v~~~~~~~-------~~---------------------------~------- 189 (402)
T 2aq5_A 164 GAAVLTLGPDVHPDT-------------IYSVDWSR-------DG---------------------------A------- 189 (402)
T ss_dssp TEEEEEECTTTCCSC-------------EEEEEECT-------TS---------------------------S-------
T ss_pred CCccEEEecCCCCCc-------------eEEEEECC-------CC---------------------------C-------
Confidence 9887777 334331 12233322 10 0
Q ss_pred hhhhhhhhcccceeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECCCCcEEEEe-ccCCCC-eEEEE
Q 003907 299 MEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQF-KAHTSP-ISALC 376 (787)
Q Consensus 299 ~d~sk~la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~v~~~-~aH~~p-IsaLa 376 (787)
.++.+..||.|+|||+.+++.+..+ .+|.+. +.+++
T Consensus 190 ------------------------------------------~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 227 (402)
T 2aq5_A 190 ------------------------------------------LICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAV 227 (402)
T ss_dssp ------------------------------------------CEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEE
T ss_pred ------------------------------------------EEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEE
Confidence 0123356899999999999999999 799876 99999
Q ss_pred ECCCCCEEEEE---EcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEE-eCC
Q 003907 377 FDPSGTLLVTA---SVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIV-SSK 452 (787)
Q Consensus 377 FSpdG~lLATa---S~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~LAs~-S~d 452 (787)
|+|+|++|+++ +.++ .|+|||+... . .......+ + +...|.+++|+||+++|+++ +.|
T Consensus 228 ~~~~~~~l~~g~~~~~d~-~i~iwd~~~~-------~-------~~~~~~~~--~-~~~~v~~~~~s~~~~~l~~~g~~d 289 (402)
T 2aq5_A 228 FVSEGKILTTGFSRMSER-QVALWDTKHL-------E-------EPLSLQEL--D-TSSGVLLPFFDPDTNIVYLCGKGD 289 (402)
T ss_dssp ECSTTEEEEEEECTTCCE-EEEEEETTBC-------S-------SCSEEEEC--C-CCSSCEEEEEETTTTEEEEEETTC
T ss_pred EcCCCcEEEEeccCCCCc-eEEEEcCccc-------c-------CCceEEec--c-CCCceeEEEEcCCCCEEEEEEcCC
Confidence 99999999999 5645 5999998541 0 00122222 1 23458999999999999754 579
Q ss_pred CeEEEEeCCCCC
Q 003907 453 GTCHVFVLSPFG 464 (787)
Q Consensus 453 gTVhIwdl~~~g 464 (787)
++|+||++....
T Consensus 290 g~i~i~d~~~~~ 301 (402)
T 2aq5_A 290 SSIRYFEITSEA 301 (402)
T ss_dssp SCEEEEEECSST
T ss_pred CeEEEEEecCCC
Confidence 999999998654
No 79
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=99.83 E-value=9.8e-19 Score=213.67 Aligned_cols=118 Identities=14% Similarity=0.155 Sum_probs=83.3
Q ss_pred cccccCCCceEEEEECCCCcEE----E--Eec-----cCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCccc----
Q 003907 341 AGADMDNAGIVVVKDFVTRAII----S--QFK-----AHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMR---- 405 (787)
Q Consensus 341 ~~~s~~~dG~V~IwDl~s~~~v----~--~~~-----aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~---- 405 (787)
.+++++.||+|++||+.++... . .+. +|...|.+|+|+|||++||+|+.||+ |+|||+......
T Consensus 449 ~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafspdg~~LAsgs~Dgt-V~lwd~~~~~~~~~~~ 527 (902)
T 2oaj_A 449 AFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAAETLELAVSIETGD-VVLFKYEVNQFYSVEN 527 (902)
T ss_dssp EEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEETTTTEEEEEETTSC-EEEEEEEECCC-----
T ss_pred EEEEecCCCcEEEEECCCccccCCceEEeechhhcCCCCCCceeEEEecCCCCeEEEEecCcE-EEEEEecCccccCccc
Confidence 4568899999999999876421 1 122 89999999999999999999999876 999998542000
Q ss_pred -CCCCCCcc-----------------------ccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEeCC
Q 003907 406 -SGSGNHKY-----------------------DWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLS 461 (787)
Q Consensus 406 -~~~g~~~~-----------------------~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~ 461 (787)
+....... .+....+++..+. + +.+.|++|+||||| +||+|+.|++|+|||+.
T Consensus 528 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~-~-h~~~V~svafSpdG-~lAsgs~D~tv~lwd~~ 604 (902)
T 2oaj_A 528 RPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVH-A-NKGKTSAINNSNIG-FVGIAYAAGSLMLIDRR 604 (902)
T ss_dssp ----------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEEC-C-CSCSEEEEEECBTS-EEEEEETTSEEEEEETT
T ss_pred cCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEE-c-CCCcEEEEEecCCc-EEEEEeCCCcEEEEECC
Confidence 00000000 0000113355554 3 45679999999999 99999999999999986
Q ss_pred C
Q 003907 462 P 462 (787)
Q Consensus 462 ~ 462 (787)
.
T Consensus 605 ~ 605 (902)
T 2oaj_A 605 G 605 (902)
T ss_dssp T
T ss_pred C
Confidence 4
No 80
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.83 E-value=3.7e-19 Score=212.68 Aligned_cols=264 Identities=11% Similarity=0.111 Sum_probs=178.0
Q ss_pred CCCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccC-CCceeEeeeeccCcEEEEEEecCCCCCCCCCCcccc
Q 003907 52 SEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVED-ASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKL 129 (787)
Q Consensus 52 ~~~~~~~v~wa~Fd~l~~~~~~~~~vL~lG~~~G-~qVWdv~~-~~~~~ells~~dg~V~~v~~lP~P~~~~~~d~F~~s 129 (787)
..+|++.|..+.|+. +++.|++|..+| ++|||++. .+.....+..|.++|.++.+.|++ .
T Consensus 5 l~gH~~~V~~l~~s~-------dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~-----------~ 66 (753)
T 3jro_A 5 ANAHNELIHDAVLDY-------YGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPK-----------F 66 (753)
T ss_dssp ---CCCCEEEECCCS-------SSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTT-----------S
T ss_pred cccCcceeEEEEECC-------CCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCC-----------C
Confidence 467899999999974 356788887776 99999963 234556677899999999998642 1
Q ss_pred CcEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCe--EEEEEe-CCCcEEEEEecCC---
Q 003907 130 HPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHC--YEHVLR-FRSSVCMVRCSPR--- 203 (787)
Q Consensus 130 rpLLavV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~--~v~tL~-f~s~V~sV~~s~~--- 203 (787)
..+|++++. +++|++||+.+++ .+..+. +...|.++++++.
T Consensus 67 ~~~l~s~s~---------------------------------Dg~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~ 113 (753)
T 3jro_A 67 GTILASCSY---------------------------------DGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYG 113 (753)
T ss_dssp CSEEEEEET---------------------------------TSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGC
T ss_pred CCEEEEEeC---------------------------------CCeEEEEECCCCcccccccccCCCCCeEEEEECCCCCC
Confidence 236655332 2589999999997 566665 3469999999864
Q ss_pred -eEEEEe-CCeEEEEECCCCce--eEEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCcceeccccCCC
Q 003907 204 -IVAVGL-ATQIYCFDALTLEN--KFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTP 279 (787)
Q Consensus 204 -~LaV~~-~~~I~iwD~~T~e~--l~tl~t~p~p~~~~~~~~~~~~~~~~lAlspr~LAyas~~~~l~~~g~~s~q~lt~ 279 (787)
.|+++. ++.|++||+.+... ...+..++.+ ...++++|..+...+..
T Consensus 114 ~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~-------------v~~l~~~p~~~~~~~~~---------------- 164 (753)
T 3jro_A 114 PLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIG-------------VNSASWAPATIEEDGEH---------------- 164 (753)
T ss_dssp SEEEEEETTSEEEEEECCSSSCCCCEEEECCSSC-------------EEEEEECCCC-----------------------
T ss_pred CEEEEEeCCCcEEEEEeecCCCcceeEeecCCCc-------------eEEEEecCccccccccc----------------
Confidence 677655 56899999988743 2333333321 22333332111110000
Q ss_pred CCcCCCcCCCCCceeEeeehhhhhhhhcccceeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECCCC
Q 003907 280 SGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTR 359 (787)
Q Consensus 280 ~~~s~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~ 359 (787)
. ....+..++.+..||.|++||+.++
T Consensus 165 --------------------------------------------------~----~~~d~~~l~sgs~dg~I~iwd~~~~ 190 (753)
T 3jro_A 165 --------------------------------------------------N----GTKESRKFVTGGADNLVKIWKYNSD 190 (753)
T ss_dssp --------------------------------------------------------CGGGCCEEEEETTSCEEEEEEETT
T ss_pred --------------------------------------------------c----cCCCCCEEEEEECCCeEEEEeccCC
Confidence 0 0000112345677999999999876
Q ss_pred ----cEEEEeccCCCCeEEEEECCC---CCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccc
Q 003907 360 ----AIISQFKAHTSPISALCFDPS---GTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSA 432 (787)
Q Consensus 360 ----~~v~~~~aH~~pIsaLaFSpd---G~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a 432 (787)
..+..+.+|..+|.+++|+|+ |++|++++.||. |+|||+.... +. ....+.. ...+..
T Consensus 191 ~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~-I~iwd~~~~~-----~~-------~~~~~~~--~~~~~~ 255 (753)
T 3jro_A 191 AQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRT-CIIWTQDNEQ-----GP-------WKKTLLK--EEKFPD 255 (753)
T ss_dssp TTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSC-EEEEEESSSS-----SC-------CBCCBSS--SSCCSS
T ss_pred cccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCE-EEEecCCCCC-----Cc-------ceeEEec--cCCCCC
Confidence 567788999999999999999 999999999776 9999985420 00 0001111 111335
Q ss_pred cEEEEEEccCCCEEEEEeCCCeEEEEeCCCCC
Q 003907 433 TIQDICFSHYSQWIAIVSSKGTCHVFVLSPFG 464 (787)
Q Consensus 433 ~I~slaFSpDg~~LAs~S~dgTVhIwdl~~~g 464 (787)
.|++++|+|||++|++++.||+|+||++...+
T Consensus 256 ~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~~~ 287 (753)
T 3jro_A 256 VLWRASWSLSGNVLALSGGDNKVTLWKENLEG 287 (753)
T ss_dssp CCCCEEECTTTCCEEEECSSSCEECCBCCSSS
T ss_pred ceEEEEEcCCCCEEEEEcCCCEEEEEecCCCC
Confidence 69999999999999999999999999998643
No 81
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.83 E-value=1.4e-18 Score=192.87 Aligned_cols=242 Identities=12% Similarity=0.146 Sum_probs=163.2
Q ss_pred CeEEEEEecCc-EEEEEccCC---------CceeEeeeeccCcEEEEEEecCCCCCCCCCCccccCcEEEEEEcCCCCCC
Q 003907 75 KQVLLLGYQNG-FQVLDVEDA---------SNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTL 144 (787)
Q Consensus 75 ~~vL~lG~~~G-~qVWdv~~~---------~~~~ells~~dg~V~~v~~lP~P~~~~~~d~F~~srpLLavV~~d~~~~~ 144 (787)
+.+|++|..+| ++|||+... ......+..|.+.|.+|.+.|.. ..+|++ ++
T Consensus 141 ~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~------------~~~l~s-~~------ 201 (430)
T 2xyi_A 141 ACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNL------------NGYLLS-AS------ 201 (430)
T ss_dssp EEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTS------------TTEEEE-EC------
T ss_pred CcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCC------------CCeEEE-Ee------
Confidence 57899998877 999999752 34455667888999999998741 115543 21
Q ss_pred CCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeE-------EEEEe-CCCcEEEEEecC---CeEEEEe-CCe
Q 003907 145 APGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCY-------EHVLR-FRSSVCMVRCSP---RIVAVGL-ATQ 212 (787)
Q Consensus 145 ~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~-------v~tL~-f~s~V~sV~~s~---~~LaV~~-~~~ 212 (787)
.+++|++||+.++.. ...+. +...|.+|++++ ++|+++. ++.
T Consensus 202 --------------------------~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~ 255 (430)
T 2xyi_A 202 --------------------------DDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQK 255 (430)
T ss_dssp --------------------------TTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSE
T ss_pred --------------------------CCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCe
Confidence 125899999987422 33443 345899999976 5777665 678
Q ss_pred EEEEECCCC---ceeEEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCcceeccccCCCCCcCCCcCCC
Q 003907 213 IYCFDALTL---ENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPG 289 (787)
Q Consensus 213 I~iwD~~T~---e~l~tl~t~p~p~~~~~~~~~~~~~~~~lAlspr~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~sp~ 289 (787)
|++||+.+. +.+..+..|..+ ...++++| ..
T Consensus 256 i~i~d~~~~~~~~~~~~~~~~~~~-------------v~~i~~~p-------~~-------------------------- 289 (430)
T 2xyi_A 256 LMIWDTRNNNTSKPSHTVDAHTAE-------------VNCLSFNP-------YS-------------------------- 289 (430)
T ss_dssp EEEEETTCSCSSSCSEEEECCSSC-------------EEEEEECS-------SC--------------------------
T ss_pred EEEEECCCCCCCcceeEeecCCCC-------------eEEEEeCC-------CC--------------------------
Confidence 999999987 344555443321 12233322 10
Q ss_pred CCceeEeeehhhhhhhhcccceeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECCC-CcEEEEeccC
Q 003907 290 GSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVT-RAIISQFKAH 368 (787)
Q Consensus 290 ~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s-~~~v~~~~aH 368 (787)
.. .++.+..+|.|+|||+.+ ...+..+.+|
T Consensus 290 -~~------------------------------------------------~l~tg~~dg~v~vwd~~~~~~~~~~~~~h 320 (430)
T 2xyi_A 290 -EF------------------------------------------------ILATGSADKTVALWDLRNLKLKLHSFESH 320 (430)
T ss_dssp -TT------------------------------------------------EEEEEETTSEEEEEETTCTTSCSEEEECC
T ss_pred -CC------------------------------------------------EEEEEeCCCeEEEEeCCCCCCCeEEeecC
Confidence 00 012345689999999998 5678899999
Q ss_pred CCCeEEEEECCCCC-EEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCC-EE
Q 003907 369 TSPISALCFDPSGT-LLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQ-WI 446 (787)
Q Consensus 369 ~~pIsaLaFSpdG~-lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~-~L 446 (787)
..+|.+|+|+|+|. +||+++.||. |+|||+...... ......-......++.+ .| +...|.+++|+|+++ +|
T Consensus 321 ~~~v~~i~~sp~~~~~l~s~~~d~~-i~iwd~~~~~~~---~~~~~~~~~~~~~~~~~-~~-h~~~v~~~~~~p~~~~~l 394 (430)
T 2xyi_A 321 KDEIFQVQWSPHNETILASSGTDRR-LHVWDLSKIGEE---QSTEDAEDGPPELLFIH-GG-HTAKISDFSWNPNEPWII 394 (430)
T ss_dssp SSCEEEEEECSSCTTEEEEEETTSC-CEEEEGGGTTCC---CCHHHHHHCCTTEEEEC-CC-CSSCEEEEEECSSSTTEE
T ss_pred CCCEEEEEECCCCCCEEEEEeCCCc-EEEEeCCCCccc---cCccccccCCcceEEEc-CC-CCCCceEEEECCCCCCEE
Confidence 99999999999995 7999999776 999998541000 00000000001234433 33 345799999999999 89
Q ss_pred EEEeCCCeEEEEeCCC
Q 003907 447 AIVSSKGTCHVFVLSP 462 (787)
Q Consensus 447 As~S~dgTVhIwdl~~ 462 (787)
++++.||+|+||++..
T Consensus 395 ~s~s~dg~i~iw~~~~ 410 (430)
T 2xyi_A 395 CSVSEDNIMQVWQMAE 410 (430)
T ss_dssp EEEETTSEEEEEEECH
T ss_pred EEEECCCCEEEeEccc
Confidence 9999999999999974
No 82
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=99.83 E-value=1.8e-18 Score=190.18 Aligned_cols=269 Identities=12% Similarity=0.099 Sum_probs=163.7
Q ss_pred CCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEcc--CCCceeEeeeeccCcEEEEEEecCCCCCCCCC---Ccc
Q 003907 54 DLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVE--DASNFNELVSKRDGPVSFLQMQPFPVKDDGCE---GFR 127 (787)
Q Consensus 54 ~~~~~v~wa~Fd~l~~~~~~~~~vL~lG~~~G-~qVWdv~--~~~~~~ells~~dg~V~~v~~lP~P~~~~~~d---~F~ 127 (787)
+|+..|..+.|.. +++.|++|..+| ++|||++ ..+++...+..+ .|..+.+.|.+....... .+.
T Consensus 109 ~h~~~v~~~~~~~-------~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~--~i~~~~~~~~~~~~~~~~~~~~~~ 179 (437)
T 3gre_A 109 DCSSTVTQITMIP-------NFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCE--CIRKINLKNFGKNEYAVRMRAFVN 179 (437)
T ss_dssp ECSSCEEEEEECT-------TSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEE--EEEEEEGGGGSSCCCEEEEEEEEC
T ss_pred cCCCCEEEEEEeC-------CCCEEEEEeCCCEEEEEEeccccCCceeeccccc--eeEEEEccCcccccCceEEEEEEc
Confidence 3677788888863 356788888876 9999995 234454444433 455555444210000000 011
Q ss_pred ccCcEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeC---CCcEEEEEecC--
Q 003907 128 KLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRF---RSSVCMVRCSP-- 202 (787)
Q Consensus 128 ~srpLLavV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~v~tL~f---~s~V~sV~~s~-- 202 (787)
....+|++.+ .+++|++||+++++.+.+++. ...|.++++++
T Consensus 180 ~~~~~l~~~~---------------------------------~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~ 226 (437)
T 3gre_A 180 EEKSLLVALT---------------------------------NLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEEC 226 (437)
T ss_dssp SSCEEEEEEE---------------------------------TTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTS
T ss_pred CCCCEEEEEe---------------------------------CCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCC
Confidence 2223554322 136899999999999999986 47999999987
Q ss_pred CeEEEEe-CCeEEEEECCCCceeEEEE-ecCCcccCCCCccccccccceeEEccceEEEecCCceecCcceeccccCCCC
Q 003907 203 RIVAVGL-ATQIYCFDALTLENKFSVL-TYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPS 280 (787)
Q Consensus 203 ~~LaV~~-~~~I~iwD~~T~e~l~tl~-t~p~p~~~~~~~~~~~~~~~~lAlspr~LAyas~~~~l~~~g~~s~q~lt~~ 280 (787)
++|+++. ++.|++||+.+++.+.++. .+..+ ...+++.|.
T Consensus 227 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~-------------v~~~~~~~~------------------------- 268 (437)
T 3gre_A 227 CVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAP-------------ITHVEVCQF------------------------- 268 (437)
T ss_dssp CEEEEEETTSCEEEEETTTTEEEEEEBCTTCEE-------------EEEEEECTT-------------------------
T ss_pred CEEEEEcCCCeEEEEEcCCccEEEEEecCCCCc-------------eEEEEeccc-------------------------
Confidence 6777765 5579999999988777765 22211 122322211
Q ss_pred CcCCCcCCCCCceeEeeehhhhhhhhcccceeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECCCCc
Q 003907 281 GVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRA 360 (787)
Q Consensus 281 ~~s~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~ 360 (787)
++|+ + ..++.+..||.|+|||+.+++
T Consensus 269 -----~s~~-~------------------------------------------------~~l~s~~~dg~i~iwd~~~~~ 294 (437)
T 3gre_A 269 -----YGKN-S------------------------------------------------VIVVGGSSKTFLTIWNFVKGH 294 (437)
T ss_dssp -----TCTT-E------------------------------------------------EEEEEESTTEEEEEEETTTTE
T ss_pred -----cCCC-c------------------------------------------------cEEEEEcCCCcEEEEEcCCCc
Confidence 0000 0 012234567888888888887
Q ss_pred EEEEecc--------------------------CCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCccc-CCCCC---
Q 003907 361 IISQFKA--------------------------HTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMR-SGSGN--- 410 (787)
Q Consensus 361 ~v~~~~a--------------------------H~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~-~~~g~--- 410 (787)
.+..+.+ |..+|.+++|+ +|++|+|++.|| .|++||+...... ...+.
T Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~-~i~~wd~~~~~~~~~~~~~~~~ 372 (437)
T 3gre_A 295 CQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATS-SIVMFSLNELSSSKAVISPSRF 372 (437)
T ss_dssp EEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGT-EEEEEETTCGGGCEEEECC--C
T ss_pred EEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEecCCCC-eEEEEECCCcccceEEeccccc
Confidence 7776664 55668889999 789999999966 5999998642100 00000
Q ss_pred -Ccc---ccCCcceEEE-----------EEecccccccEEEEEEccC--CCEEEEEeCCCeEEEEe
Q 003907 411 -HKY---DWNSSHVHLY-----------KLHRGITSATIQDICFSHY--SQWIAIVSSKGTCHVFV 459 (787)
Q Consensus 411 -~~~---~~~~s~~~l~-----------~l~rG~~~a~I~slaFSpD--g~~LAs~S~dgTVhIwd 459 (787)
..+ ........+. ....+ +...|.+|+|+++ +.+|++++.||+|+||+
T Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~I~~i~~~~~~~~~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 373 SDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLY-HHDIINSISTCEVDETPLLVACDNSGLIGIFQ 437 (437)
T ss_dssp CCEEEEEEEETTEEEEEEECC--------------CCCEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred CceEEEEEeecceEEEEEecccccccccCcccc-cccceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence 000 0000000000 00011 3457999999998 88999999999999995
No 83
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=99.82 E-value=2.2e-19 Score=195.03 Aligned_cols=240 Identities=9% Similarity=0.032 Sum_probs=142.5
Q ss_pred CeEEEEEecCcEEEEEccCCCceeEeeeeccCcEEEEEEecCCCCCCCCCCccccCcEEEEEEcCCCCCCCCCCCcCCCC
Q 003907 75 KQVLLLGYQNGFQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLG 154 (787)
Q Consensus 75 ~~vL~lG~~~G~qVWdv~~~~~~~ells~~dg~V~~v~~lP~P~~~~~~d~F~~srpLLavV~~d~~~~~~~~~~~~~~~ 154 (787)
..++..+.....+.|++... ....|++.|.+|+|.|+. + +||..+.+.
T Consensus 17 ~~~~~~~g~~~~~~w~~p~~-----~p~~H~~~V~~v~fSpDG-----------~--~las~s~d~-------------- 64 (357)
T 4g56_B 17 NLYFQSNGSSKGSAWGRPVT-----APACMEVQIGAVRYRRDG-----------A--LLLAASSLS-------------- 64 (357)
T ss_dssp ----------------------------CCCSEEEEEEECSSS-----------C--EEEEEECSS--------------
T ss_pred ceEEecCCCccccccCCCCC-----CcccccCCEEEEEECCCC-----------C--EEEEEcCCC--------------
Confidence 33444444455799998542 234688999999999863 2 676533211
Q ss_pred CcccCCcCCCCCCCCCCCCEEEEEECCCCeEE-----EEEeCCCcEEEEEecC--CeEEEEeCCeEEEEECCCCceeEEE
Q 003907 155 GVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYE-----HVLRFRSSVCMVRCSP--RIVAVGLATQIYCFDALTLENKFSV 227 (787)
Q Consensus 155 ~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~v-----~tL~f~s~V~sV~~s~--~~LaV~~~~~I~iwD~~T~e~l~tl 227 (787)
+ ..| +++|++|+..+++.. ....+...|.+|+|++ ++|+++.++.|+|||+.+++.+...
T Consensus 65 -~--~~w----------d~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~~l~~s~dg~v~lWd~~~~~~~~~~ 131 (357)
T 4g56_B 65 -S--RTW----------GGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKGILVASDSGAVELWEILEKESLLVN 131 (357)
T ss_dssp -S--SSC----------CEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTTEEEEEETTSCEEEC--------CCC
T ss_pred -C--ccc----------cCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCCCEEEEECCCEEEEeeccccceeEEE
Confidence 0 112 368999999887643 3345667899999988 4566666778999999887643221
Q ss_pred E----ecCCcccCCCCccccccccceeEEccceEEEecCCceecCcceeccccCCCCCcCCCcCCCCCceeEeeehhhhh
Q 003907 228 L----TYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSK 303 (787)
Q Consensus 228 ~----t~p~p~~~~~~~~~~~~~~~~lAlspr~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~sp~~g~lva~~a~d~sk 303 (787)
. .|..+ ...++++| +. .
T Consensus 132 ~~~~~~h~~~-------------V~~v~~sp-------dg---------------------------~------------ 152 (357)
T 4g56_B 132 KFAKYEHDDI-------------VKTLSVFS-------DG---------------------------T------------ 152 (357)
T ss_dssp CEEECCCSSC-------------EEEEEECS-------SS---------------------------S------------
T ss_pred eeccCCCCCC-------------EEEEEECC-------CC---------------------------C------------
Confidence 1 12111 11222221 10 0
Q ss_pred hhhcccceeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCC-
Q 003907 304 QFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGT- 382 (787)
Q Consensus 304 ~la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~v~~~~aH~~pIsaLaFSpdG~- 382 (787)
.++++..||+|+|||+.+++.+..+.+|..+|.+++|+|++.
T Consensus 153 -------------------------------------~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~ 195 (357)
T 4g56_B 153 -------------------------------------QAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDT 195 (357)
T ss_dssp -------------------------------------EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSS
T ss_pred -------------------------------------EEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCc
Confidence 122345689999999999999999999999999999999885
Q ss_pred EEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCC-CEEEEEeCCCeEEEEeCC
Q 003907 383 LLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYS-QWIAIVSSKGTCHVFVLS 461 (787)
Q Consensus 383 lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg-~~LAs~S~dgTVhIwdl~ 461 (787)
+|++++.||+ |+|||+.. + ..+..+....+...|.+++|+||+ ++||+++.|++|+|||+.
T Consensus 196 ~~~s~~~dg~-v~~wd~~~-------~----------~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~ 257 (357)
T 4g56_B 196 IFLSCGEDGR-ILLWDTRK-------P----------KPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIK 257 (357)
T ss_dssp CEEEEETTSC-EEECCTTS-------S----------SCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESS
T ss_pred eeeeeccCCc-eEEEECCC-------C----------ceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECC
Confidence 8899999776 99999864 2 112222222233469999999984 789999999999999998
Q ss_pred CCCCcccccccc
Q 003907 462 PFGGDSGFQTLS 473 (787)
Q Consensus 462 ~~gg~~~~~~H~ 473 (787)
.......+..|.
T Consensus 258 ~~~~~~~~~~~~ 269 (357)
T 4g56_B 258 NPDSAQTSAVHS 269 (357)
T ss_dssp CGGGCEEECCCS
T ss_pred CCcEeEEEeccc
Confidence 765555555664
No 84
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=99.82 E-value=2.2e-18 Score=183.35 Aligned_cols=276 Identities=13% Similarity=0.110 Sum_probs=167.2
Q ss_pred CCCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCceeEe--eeeccCcEEEEEEecCCCCCCCCCCccc
Q 003907 52 SEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNEL--VSKRDGPVSFLQMQPFPVKDDGCEGFRK 128 (787)
Q Consensus 52 ~~~~~~~v~wa~Fd~l~~~~~~~~~vL~lG~~~G-~qVWdv~~~~~~~el--ls~~dg~V~~v~~lP~P~~~~~~d~F~~ 128 (787)
..+|++.|..+.|.. +++.|++|..+| ++|||++. ++.... +..|.++|.++.+.|+.
T Consensus 48 ~~~h~~~v~~~~~~~-------~~~~l~~~~~dg~i~vwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~----------- 108 (372)
T 1k8k_C 48 LKEHNGQVTGVDWAP-------DSNRIVTCGTDRNAYVWTLKG-RTWKPTLVILRINRAARCVRWAPNE----------- 108 (372)
T ss_dssp EECCSSCEEEEEEET-------TTTEEEEEETTSCEEEEEEET-TEEEEEEECCCCSSCEEEEEECTTS-----------
T ss_pred ecCCCCcccEEEEeC-------CCCEEEEEcCCCeEEEEECCC-CeeeeeEEeecCCCceeEEEECCCC-----------
Confidence 346788899888874 356778877766 99999965 443333 35678899999998742
Q ss_pred cCcEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeE---EEEEe--CCCcEEEEEecC-
Q 003907 129 LHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCY---EHVLR--FRSSVCMVRCSP- 202 (787)
Q Consensus 129 srpLLavV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~---v~tL~--f~s~V~sV~~s~- 202 (787)
.+|++.+. .++|++||+++++. ...+. +...|.++++++
T Consensus 109 --~~l~~~~~---------------------------------d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 153 (372)
T 1k8k_C 109 --KKFAVGSG---------------------------------SRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPN 153 (372)
T ss_dssp --SEEEEEET---------------------------------TSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTT
T ss_pred --CEEEEEeC---------------------------------CCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCC
Confidence 26655332 25799999998763 33442 356899999987
Q ss_pred -CeEEEEe-CCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCcceeccccCCCC
Q 003907 203 -RIVAVGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPS 280 (787)
Q Consensus 203 -~~LaV~~-~~~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~~~~~lAlspr~LAyas~~~~l~~~g~~s~q~lt~~ 280 (787)
++|+++. ++.|++||+...+... .+.+.. .+. .+ .....+ ..+..
T Consensus 154 ~~~l~~~~~dg~i~~~d~~~~~~~~----~~~~~~-----------~~~-~~-------~~~~~~---------~~~~~- 200 (372)
T 1k8k_C 154 SVLLAAGSCDFKCRIFSAYIKEVEE----RPAPTP-----------WGS-KM-------PFGELM---------FESSS- 200 (372)
T ss_dssp SSEEEEEETTSCEEEEECCCTTTSC----CCCCBT-----------TBS-CC-------CTTCEE---------EECCC-
T ss_pred CCEEEEEcCCCCEEEEEcccccccc----cccccc-----------ccc-cc-------chhhhe---------EecCC-
Confidence 5777765 5689999976433100 000000 000 00 000000 00000
Q ss_pred CcCCCcCCCCCceeEeeehhhhhhhhcccceeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECCCCc
Q 003907 281 GVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRA 360 (787)
Q Consensus 281 ~~s~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~ 360 (787)
+ .+....+.++++.+ .++.+..||.|++||+.+++
T Consensus 201 -----------------------------------~------~~~v~~~~~~~~~~----~l~~~~~d~~i~i~d~~~~~ 235 (372)
T 1k8k_C 201 -----------------------------------S------CGWVHGVCFSANGS----RVAWVSHDSTVCLADADKKM 235 (372)
T ss_dssp -----------------------------------C------SSCEEEEEECSSSS----EEEEEETTTEEEEEEGGGTT
T ss_pred -----------------------------------C------CCeEEEEEECCCCC----EEEEEeCCCEEEEEECCCCc
Confidence 0 00000011111111 23345678999999999999
Q ss_pred EEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCC--Cc---ccCCCCCC---------cccc---CCcceEE-
Q 003907 361 IISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMP--SC---MRSGSGNH---------KYDW---NSSHVHL- 422 (787)
Q Consensus 361 ~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~--~~---~~~~~g~~---------~~~~---~~s~~~l- 422 (787)
.+..+..|..+|.+++|+|+|++|+++ .||. |+||++.. .. ........ ...+ .......
T Consensus 236 ~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~-i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (372)
T 1k8k_C 236 AVATLASETLPLLAVTFITESSLVAAG-HDCF-PVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEG 313 (372)
T ss_dssp EEEEEECSSCCEEEEEEEETTEEEEEE-TTSS-CEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC----
T ss_pred eeEEEccCCCCeEEEEEecCCCEEEEE-eCCe-EEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhccccccccc
Confidence 999999999999999999999999988 5565 99999854 10 00000000 0000 0000111
Q ss_pred -----EEEecccccccEEEEEEc-cCC---CEEEEEeCCCeEEEEeCCC
Q 003907 423 -----YKLHRGITSATIQDICFS-HYS---QWIAIVSSKGTCHVFVLSP 462 (787)
Q Consensus 423 -----~~l~rG~~~a~I~slaFS-pDg---~~LAs~S~dgTVhIwdl~~ 462 (787)
..+..| +...|.+++|+ +|| ++|++++.||+|+||++..
T Consensus 314 ~~~~~~~~~~~-h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~ 361 (372)
T 1k8k_C 314 SAAAGAGLDSL-HKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRS 361 (372)
T ss_dssp -----CCCSSS-SSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHH
T ss_pred Ccccccccccc-ccCCcceeEEecCCCcceeeEEEecCCCceEEEEecC
Confidence 233334 34579999965 777 9999999999999999865
No 85
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.82 E-value=3.3e-18 Score=186.83 Aligned_cols=185 Identities=9% Similarity=-0.015 Sum_probs=125.8
Q ss_pred CCEEEEEEC-CCCeEEEEEeCCC-cEEEEEecC-----CeEEEEe-CCeEEEEECCCCceeEEEEecCCcccCCCCcccc
Q 003907 172 PTAVRFYSF-QSHCYEHVLRFRS-SVCMVRCSP-----RIVAVGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGI 243 (787)
Q Consensus 172 p~tVrlWdl-ktg~~v~tL~f~s-~V~sV~~s~-----~~LaV~~-~~~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~ 243 (787)
+++|++|++ .+|+.+.++..++ .|..++|++ .+||.+. |++|+|||+.|+++++++.++.....
T Consensus 156 d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~-------- 227 (356)
T 2w18_A 156 DQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQA-------- 227 (356)
T ss_dssp TCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---C--------
T ss_pred CCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCccee--------
Confidence 579999999 5588888887654 455555544 7788754 67899999999999999986543200
Q ss_pred ccccceeEEcc--ceEEEecCCceecCcceeccccCCCCCcCCCcCCCCCceeEeeehhhhhhhhcccceeecccccccC
Q 003907 244 NVGYGPMAVGP--RWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELL 321 (787)
Q Consensus 244 ~~~~~~lAlsp--r~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~ 321 (787)
....++|+| ++++....+. + .
T Consensus 228 --~v~~vafSpdG~~lvs~s~~~--------------------------~----------~------------------- 250 (356)
T 2w18_A 228 --SVCHKAYSEMGLLFIVLSHPC--------------------------A----------K------------------- 250 (356)
T ss_dssp --CCEEEEEEETTEEEEEEC------------------------------------------------------------
T ss_pred --eeEEEEECCCCCEEEEeccCC--------------------------C----------c-------------------
Confidence 122345554 2222221100 0 0
Q ss_pred CCCCCCCcccCCccccccccccccCCCceEEEEECCCCcEEEEe-----ccCCCCeEEEEECCCCCEEEEEEcCCCEEEE
Q 003907 322 PDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQF-----KAHTSPISALCFDPSGTLLVTASVYGNNINI 396 (787)
Q Consensus 322 p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~v~~~-----~aH~~pIsaLaFSpdG~lLATaS~dG~~IrV 396 (787)
| .++++..|++|++||..+++.+..+ .+|...+.+.++ +|.++|++|.|++ |+|
T Consensus 251 -------------w-----~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~--sg~~lASgS~DgT-IkI 309 (356)
T 2w18_A 251 -------------E-----SESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDV--KDHCAAAILTSGT-IAI 309 (356)
T ss_dssp -------------------------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEE--ETTEEEEEETTSC-EEE
T ss_pred -------------c-----eeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEcccc--CCCEEEEEcCCCc-EEE
Confidence 0 0234567999999999999887765 478776554444 4899999999775 999
Q ss_pred EeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEeC
Q 003907 397 FRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVL 460 (787)
Q Consensus 397 Wdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl 460 (787)
||+.. | +.+.+|. |++...+.+++|||||++|++|+.|+||+|||+
T Consensus 310 WDl~t-------G----------k~l~tL~-gH~~~vvs~vafSPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 310 WDLLL-------G----------QCTALLP-PVSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp EETTT-------C----------SEEEEEC-CC--CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred EECCC-------C----------cEEEEec-CCCCCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence 99965 3 4677774 444334557999999999999999999999986
No 86
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.82 E-value=7.1e-19 Score=188.57 Aligned_cols=101 Identities=11% Similarity=0.115 Sum_probs=76.9
Q ss_pred cCCCceEEEEECCCCcEE-EEecc-CCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEE
Q 003907 345 MDNAGIVVVKDFVTRAII-SQFKA-HTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHL 422 (787)
Q Consensus 345 ~~~dG~V~IwDl~s~~~v-~~~~a-H~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l 422 (787)
+..||.|+|||+.+++.+ ..+.. |..+|.+|+|+|+|.+|++++. + .|+|||++..... ..+
T Consensus 188 g~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~~-~-~v~iwd~~~~~~~--------------~~~ 251 (343)
T 3lrv_A 188 YSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVECD-Q-TVVCFDLRKDVGT--------------LAY 251 (343)
T ss_dssp ECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEES-S-BEEEEETTSSTTC--------------BSS
T ss_pred EcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEeC-C-eEEEEEcCCCCcc--------------eee
Confidence 456899999999999887 88988 9999999999999999999995 6 6999999642100 000
Q ss_pred EEEecccccccE--EEEEEccCCCEEEEEeC-CCeEEEEeCCCC
Q 003907 423 YKLHRGITSATI--QDICFSHYSQWIAIVSS-KGTCHVFVLSPF 463 (787)
Q Consensus 423 ~~l~rG~~~a~I--~slaFSpDg~~LAs~S~-dgTVhIwdl~~~ 463 (787)
..+. + +...+ .+++|+|||++|++++. |++++||++...
T Consensus 252 ~~~~-~-~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~ 293 (343)
T 3lrv_A 252 PTYT-I-PEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKK 293 (343)
T ss_dssp CCCB-C------CCEEEEECTTSSEEEEEETTTTEEEEEEECTT
T ss_pred cccc-c-ccccccceEEEECCCCCEEEEecCCCCcEEEEEEccc
Confidence 0000 0 00112 46999999999999998 999999999754
No 87
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=99.82 E-value=3.7e-18 Score=183.22 Aligned_cols=224 Identities=15% Similarity=0.180 Sum_probs=161.4
Q ss_pred CcEEEEEccCCCceeEeeeeccCcEEEEEEec-CCCCCCCCCCccccCcEEEEEEcCCCCCCCCCCCcCCCCCcccCCcC
Q 003907 84 NGFQVLDVEDASNFNELVSKRDGPVSFLQMQP-FPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMD 162 (787)
Q Consensus 84 ~G~qVWdv~~~~~~~ells~~dg~V~~v~~lP-~P~~~~~~d~F~~srpLLavV~~d~~~~~~~~~~~~~~~~~r~g~~~ 162 (787)
..++||+++. ++..+++..|.++|.++++.| +. .+||+.+.
T Consensus 23 ~~~~v~~~~~-~~~~~~~~~h~~~v~~~~~s~~~~-------------~~l~~~~~------------------------ 64 (408)
T 4a11_B 23 STRRVLGLEL-NKDRDVERIHGGGINTLDIEPVEG-------------RYMLSGGS------------------------ 64 (408)
T ss_dssp HHHHHHTEEE-CTTEEECCCCSSCEEEEEECTTTC-------------CEEEEEET------------------------
T ss_pred Ccceeecccc-CcceeeeeccCCcEEEEEEecCCC-------------CEEEEEcC------------------------
Confidence 3478888854 567788888999999999987 42 26665321
Q ss_pred CCCCCCCCCCCEEEEEECCCCeEEEEEe--------------CCCcEEEEEecC---CeEEEEe-CCeEEEEECCCCcee
Q 003907 163 SQSGNCVNSPTAVRFYSFQSHCYEHVLR--------------FRSSVCMVRCSP---RIVAVGL-ATQIYCFDALTLENK 224 (787)
Q Consensus 163 ~~~~~~~~~p~tVrlWdlktg~~v~tL~--------------f~s~V~sV~~s~---~~LaV~~-~~~I~iwD~~T~e~l 224 (787)
+++|++||+.+++....+. +...|.++++++ ++|+++. ++.|++||+.+++..
T Consensus 65 ---------dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~ 135 (408)
T 4a11_B 65 ---------DGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTA 135 (408)
T ss_dssp ---------TSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEE
T ss_pred ---------CCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccc
Confidence 2589999999987766654 567999999987 4677655 678999999998876
Q ss_pred EEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCcceeccccCCCCCcCCCcCCCCCceeEeeehhhhhh
Q 003907 225 FSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQ 304 (787)
Q Consensus 225 ~tl~t~p~p~~~~~~~~~~~~~~~~lAlspr~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~sp~~g~lva~~a~d~sk~ 304 (787)
..+.. +.+ ...+++ .... +. +.
T Consensus 136 ~~~~~-~~~-------------~~~~~~-------~~~~------------------------~~-~~------------ 157 (408)
T 4a11_B 136 DVFNF-EET-------------VYSHHM-------SPVS------------------------TK-HC------------ 157 (408)
T ss_dssp EEEEC-SSC-------------EEEEEE-------CSSC------------------------SS-CC------------
T ss_pred eeccC-CCc-------------eeeeEe-------ecCC------------------------CC-Cc------------
Confidence 66542 111 111222 1100 00 00
Q ss_pred hhcccceeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCC-E
Q 003907 305 FAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGT-L 383 (787)
Q Consensus 305 la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~v~~~~aH~~pIsaLaFSpdG~-l 383 (787)
.++.+..+|.|++||+.+++.+..+.+|..+|.+++|+|+|+ +
T Consensus 158 ------------------------------------~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 201 (408)
T 4a11_B 158 ------------------------------------LVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYI 201 (408)
T ss_dssp ------------------------------------EEEEEESSSSEEEEESSSSCCCEEECCCCSCEEEEEECSSCTTE
T ss_pred ------------------------------------EEEEEcCCCeEEEEeCCCcceeeeecCCCCcEEEEEECCCCCcE
Confidence 012345688999999999999999999999999999999999 6
Q ss_pred EEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEe-------------cccccccEEEEEEccCCCEEEEEe
Q 003907 384 LVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLH-------------RGITSATIQDICFSHYSQWIAIVS 450 (787)
Q Consensus 384 LATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~-------------rG~~~a~I~slaFSpDg~~LAs~S 450 (787)
|++++.||. |++||+.... ..+..+. ...+...|.+++|+||+++|++++
T Consensus 202 l~~~~~dg~-i~i~d~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 264 (408)
T 4a11_B 202 LATASADSR-VKLWDVRRAS----------------GCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVG 264 (408)
T ss_dssp EEEEETTSC-EEEEETTCSS----------------CCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEE
T ss_pred EEEEcCCCc-EEEEECCCCC----------------cccccccccccccceeeccccccccCceeEEEEcCCCCEEEEec
Confidence 999999776 9999996421 0111110 011335699999999999999999
Q ss_pred CCCeEEEEeCCCCCC
Q 003907 451 SKGTCHVFVLSPFGG 465 (787)
Q Consensus 451 ~dgTVhIwdl~~~gg 465 (787)
.||+|++||+.....
T Consensus 265 ~dg~i~vwd~~~~~~ 279 (408)
T 4a11_B 265 TDNRMRLWNSSNGEN 279 (408)
T ss_dssp TTSCEEEEETTTCCB
T ss_pred CCCeEEEEECCCCcc
Confidence 999999999986543
No 88
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.82 E-value=2.3e-18 Score=188.09 Aligned_cols=248 Identities=10% Similarity=0.025 Sum_probs=174.0
Q ss_pred CCCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCC------ceeEeeeeccCcEEEEEEecCCCCCCCCC
Q 003907 52 SEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDAS------NFNELVSKRDGPVSFLQMQPFPVKDDGCE 124 (787)
Q Consensus 52 ~~~~~~~v~wa~Fd~l~~~~~~~~~vL~lG~~~G-~qVWdv~~~~------~~~ells~~dg~V~~v~~lP~P~~~~~~d 124 (787)
..+|++.|..+.|... ++++|++|..+| ++|||+...+ +....+..|.++|.++++.|+.
T Consensus 77 ~~~h~~~V~~~~~~p~------~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~------- 143 (402)
T 2aq5_A 77 VCGHTAPVLDIAWCPH------NDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTA------- 143 (402)
T ss_dssp BCCCSSCEEEEEECTT------CTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSB-------
T ss_pred EecCCCCEEEEEeCCC------CCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCC-------
Confidence 4568899999999631 356888888877 9999997643 3456677899999999999741
Q ss_pred CccccCcEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEE--e-CCCcEEEEEec
Q 003907 125 GFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVL--R-FRSSVCMVRCS 201 (787)
Q Consensus 125 ~F~~srpLLavV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~v~tL--~-f~s~V~sV~~s 201 (787)
..+|++.+. +++|++||+++++.+.++ . +...|.+++++
T Consensus 144 -----~~~l~s~~~---------------------------------dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~ 185 (402)
T 2aq5_A 144 -----QNVLLSAGC---------------------------------DNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWS 185 (402)
T ss_dssp -----TTEEEEEET---------------------------------TSCEEEEETTTTEEEEEECTTTCCSCEEEEEEC
T ss_pred -----CCEEEEEcC---------------------------------CCEEEEEECCCCCccEEEecCCCCCceEEEEEC
Confidence 125654221 258999999999999999 4 45689999998
Q ss_pred C--CeEEEEe-CCeEEEEECCCCceeEEE-EecCCcccCCCCccccccccceeEEcc--ceEEEecCCceecCcceeccc
Q 003907 202 P--RIVAVGL-ATQIYCFDALTLENKFSV-LTYPVPQLAGQGAVGINVGYGPMAVGP--RWLAYASNTLLLSNSGRLSPQ 275 (787)
Q Consensus 202 ~--~~LaV~~-~~~I~iwD~~T~e~l~tl-~t~p~p~~~~~~~~~~~~~~~~lAlsp--r~LAyas~~~~l~~~g~~s~q 275 (787)
+ ++|+++. ++.|++||+.+++.+.++ ..|... ....++++| ++|+.+.
T Consensus 186 ~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~l~~g~-------------- 239 (402)
T 2aq5_A 186 RDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGT------------RPVHAVFVSEGKILTTGF-------------- 239 (402)
T ss_dssp TTSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSS------------SCCEEEECSTTEEEEEEE--------------
T ss_pred CCCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCC------------cceEEEEcCCCcEEEEec--------------
Confidence 7 5677654 668999999999888777 344331 012233322 1111110
Q ss_pred cCCCCCcCCCcCCCCCceeEeeehhhhhhhhcccceeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEE
Q 003907 276 NLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKD 355 (787)
Q Consensus 276 ~lt~~~~s~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwD 355 (787)
....+|.|+|||
T Consensus 240 --------------------------------------------------------------------~~~~d~~i~iwd 251 (402)
T 2aq5_A 240 --------------------------------------------------------------------SRMSERQVALWD 251 (402)
T ss_dssp --------------------------------------------------------------------CTTCCEEEEEEE
T ss_pred --------------------------------------------------------------------cCCCCceEEEEc
Confidence 114588999999
Q ss_pred CCCCcE-EEEec-cCCCCeEEEEECCCCCEEEEEE-cCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccc
Q 003907 356 FVTRAI-ISQFK-AHTSPISALCFDPSGTLLVTAS-VYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSA 432 (787)
Q Consensus 356 l~s~~~-v~~~~-aH~~pIsaLaFSpdG~lLATaS-~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a 432 (787)
+.+++. +..+. .|...|.+++|+|+|++|++++ .|| .|+|||+.. +. ..+..+....+..
T Consensus 252 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg-~i~i~d~~~-------~~---------~~~~~l~~~~~~~ 314 (402)
T 2aq5_A 252 TKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDS-SIRYFEITS-------EA---------PFLHYLSMFSSKE 314 (402)
T ss_dssp TTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEETTCS-CEEEEEECS-------ST---------TCEEEEEEECCSS
T ss_pred CccccCCceEEeccCCCceeEEEEcCCCCEEEEEEcCCC-eEEEEEecC-------CC---------cceEeecccccCC
Confidence 988654 33333 5778899999999999997665 455 599999954 20 1133333212345
Q ss_pred cEEEEEEccCCCEEEEEeCCCeEEEEeCCCC
Q 003907 433 TIQDICFSHYSQWIAIVSSKGTCHVFVLSPF 463 (787)
Q Consensus 433 ~I~slaFSpDg~~LAs~S~dgTVhIwdl~~~ 463 (787)
.|.+++|+||+.++++ .++++++|++...
T Consensus 315 ~v~~~~~sp~~~~~~s--~~~~~~~~~l~~~ 343 (402)
T 2aq5_A 315 SQRGMGYMPKRGLEVN--KCEIARFYKLHER 343 (402)
T ss_dssp CCSEEEECCGGGSCGG--GTEEEEEEEEETT
T ss_pred cccceEEeccccccee--cceeEEEEEcCCC
Confidence 7999999999998874 5679999999863
No 89
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=99.82 E-value=2.2e-18 Score=181.46 Aligned_cols=207 Identities=14% Similarity=0.169 Sum_probs=144.9
Q ss_pred eeeeccCcEEEEEEecCCCCCCCCCCccccCcEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEE
Q 003907 100 LVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYS 179 (787)
Q Consensus 100 lls~~dg~V~~v~~lP~P~~~~~~d~F~~srpLLavV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVrlWd 179 (787)
++..|.++|..+++.|+. + +||..+. +++|+|||
T Consensus 4 ~~~~h~~~V~~~~~s~~g-----------~--~las~s~---------------------------------D~~v~iw~ 37 (297)
T 2pm7_B 4 IANAHNEMIHDAVMDYYG-----------K--RMATCSS---------------------------------DKTIKIFE 37 (297)
T ss_dssp ECCSCSSCEEEEEECTTS-----------S--EEEEEET---------------------------------TSCEEEEE
T ss_pred eccCCcCceEEEEECCCC-----------C--EEEEEeC---------------------------------CCEEEEEe
Confidence 466789999999998642 2 6665321 26899999
Q ss_pred CCC--CeEEEEEeCC-CcEEEEEecC----CeEEEEe-CCeEEEEECCCCc--eeEEEEecCCcccCCCCccccccccce
Q 003907 180 FQS--HCYEHVLRFR-SSVCMVRCSP----RIVAVGL-ATQIYCFDALTLE--NKFSVLTYPVPQLAGQGAVGINVGYGP 249 (787)
Q Consensus 180 lkt--g~~v~tL~f~-s~V~sV~~s~----~~LaV~~-~~~I~iwD~~T~e--~l~tl~t~p~p~~~~~~~~~~~~~~~~ 249 (787)
+.+ ++.+.++..+ ..|.+|+|++ ++||++. +++|++||+.+++ .+.++..|..+ ...
T Consensus 38 ~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~-------------v~~ 104 (297)
T 2pm7_B 38 VEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQIAVHAVHSAS-------------VNS 104 (297)
T ss_dssp BCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSSSCBCCCEEECCCSSC-------------EEE
T ss_pred cCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCceEEEEEeecCCCc-------------eeE
Confidence 974 4678888755 5999999963 5777755 6789999998764 33333333321 122
Q ss_pred eEEccceEEEecCCceecCcceeccccCCCCCcCCCcCCCCCceeEeeehhhhhhhhcccceeecccccccCCCCCCCCc
Q 003907 250 MAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPV 329 (787)
Q Consensus 250 lAlspr~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~~ 329 (787)
++++| .. .|.
T Consensus 105 v~~~p-------~~--------------------------~g~------------------------------------- 114 (297)
T 2pm7_B 105 VQWAP-------HE--------------------------YGP------------------------------------- 114 (297)
T ss_dssp EEECC-------GG--------------------------GCS-------------------------------------
T ss_pred EEeCc-------CC--------------------------CCc-------------------------------------
Confidence 33322 00 000
Q ss_pred ccCCccccccccccccCCCceEEEEECCCCc--EEEEeccCCCCeEEEEECCC-------------CCEEEEEEcCCCEE
Q 003907 330 SPNSVWKVGRHAGADMDNAGIVVVKDFVTRA--IISQFKAHTSPISALCFDPS-------------GTLLVTASVYGNNI 394 (787)
Q Consensus 330 s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~--~v~~~~aH~~pIsaLaFSpd-------------G~lLATaS~dG~~I 394 (787)
.++.+..||.|+|||+.++. ....+.+|...|.+++|+|+ +++||||+.|++ |
T Consensus 115 -----------~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~-v 182 (297)
T 2pm7_B 115 -----------MLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNL-V 182 (297)
T ss_dssp -----------EEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC------------CCEEEEEETTSC-E
T ss_pred -----------EEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCc-E
Confidence 11234568999999998763 24567899999999999997 579999999776 9
Q ss_pred EEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCC---CEEEEEeCCCeEEEEeCCC
Q 003907 395 NIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYS---QWIAIVSSKGTCHVFVLSP 462 (787)
Q Consensus 395 rVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg---~~LAs~S~dgTVhIwdl~~ 462 (787)
+|||+.. +. .....+..+ .| +...|.+|+|+||+ ++||+++.|++|+||++..
T Consensus 183 ~lwd~~~-------~~------~~~~~~~~l-~~-H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~ 238 (297)
T 2pm7_B 183 KIWKYNS-------DA------QTYVLESTL-EG-HSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDN 238 (297)
T ss_dssp EEEEEET-------TT------TEEEEEEEE-CC-CSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESS
T ss_pred EEEEEcC-------CC------ceEEEEEEe-cC-CCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCC
Confidence 9999853 10 001133444 34 34579999999995 8999999999999999875
No 90
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.82 E-value=4.1e-18 Score=189.71 Aligned_cols=176 Identities=13% Similarity=0.175 Sum_probs=128.1
Q ss_pred CEEEEEECC--CCeEEEEEe---CCCcEEEEEecC--CeEEEEe-CCeEEEEECCCCceeE----EEEecCCcccCCCCc
Q 003907 173 TAVRFYSFQ--SHCYEHVLR---FRSSVCMVRCSP--RIVAVGL-ATQIYCFDALTLENKF----SVLTYPVPQLAGQGA 240 (787)
Q Consensus 173 ~tVrlWdlk--tg~~v~tL~---f~s~V~sV~~s~--~~LaV~~-~~~I~iwD~~T~e~l~----tl~t~p~p~~~~~~~ 240 (787)
++|++||+. +++.+..+. +...|.+|++++ ++|+++. +..|++||+.+++... ++..|..+
T Consensus 125 g~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~------- 197 (450)
T 2vdu_B 125 KSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSM------- 197 (450)
T ss_dssp TEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSC-------
T ss_pred CeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCEEEEEeCCCcEEEEecCCcccccccceeeecccCc-------
Confidence 689999999 898888884 557899999987 5777765 4679999998876433 33332221
Q ss_pred cccccccceeEEccceEEEecCCceecCcceeccccCCCCCcCCCcCCCCCceeEeeehhhhhhhhcccceeeccccccc
Q 003907 241 VGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQEL 320 (787)
Q Consensus 241 ~~~~~~~~~lAlspr~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l 320 (787)
...++++| +. .++.
T Consensus 198 ------v~~~~~sp-------~~-------------------------~~~~---------------------------- 211 (450)
T 2vdu_B 198 ------LTDVHLIK-------DS-------------------------DGHQ---------------------------- 211 (450)
T ss_dssp ------EEEEEEEE-------CT-------------------------TSCE----------------------------
T ss_pred ------eEEEEEcC-------CC-------------------------CCCc----------------------------
Confidence 12223222 10 0000
Q ss_pred CCCCCCCCcccCCccccccccccccCCCceEEEEECCCCcEEEE-eccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeC
Q 003907 321 LPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQ-FKAHTSPISALCFDPSGTLLVTASVYGNNINIFRI 399 (787)
Q Consensus 321 ~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~v~~-~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi 399 (787)
.+++++.||.|+|||+.+++.+.. +.+|..+|.+++|+ +|++|++++.|+ .|+|||+
T Consensus 212 --------------------~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~s-d~~~l~s~~~d~-~v~vwd~ 269 (450)
T 2vdu_B 212 --------------------FIITSDRDEHIKISHYPQCFIVDKWLFGHKHFVSSICCG-KDYLLLSAGGDD-KIFAWDW 269 (450)
T ss_dssp --------------------EEEEEETTSCEEEEEESCTTCEEEECCCCSSCEEEEEEC-STTEEEEEESSS-EEEEEET
T ss_pred --------------------EEEEEcCCCcEEEEECCCCceeeeeecCCCCceEEEEEC-CCCEEEEEeCCC-eEEEEEC
Confidence 112345689999999999988877 56999999999999 999999999966 5999998
Q ss_pred CCCcccCCCCCCccccCCcceEEEEEecc-----------------------cccccEEEEEEccCCCEEEEEe-CCCeE
Q 003907 400 MPSCMRSGSGNHKYDWNSSHVHLYKLHRG-----------------------ITSATIQDICFSHYSQWIAIVS-SKGTC 455 (787)
Q Consensus 400 ~~~~~~~~~g~~~~~~~~s~~~l~~l~rG-----------------------~~~a~I~slaFSpDg~~LAs~S-~dgTV 455 (787)
.. + ..+..+..+ .....|.+|+|+||+++|++++ .|++|
T Consensus 270 ~~-------~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i 332 (450)
T 2vdu_B 270 KT-------G----------KNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKCI 332 (450)
T ss_dssp TT-------C----------CEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEETTCSEE
T ss_pred CC-------C----------cEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEECCCCeE
Confidence 64 2 234444311 1123589999999999999999 89999
Q ss_pred EEEeC
Q 003907 456 HVFVL 460 (787)
Q Consensus 456 hIwdl 460 (787)
+||++
T Consensus 333 ~iw~~ 337 (450)
T 2vdu_B 333 IILEM 337 (450)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 99999
No 91
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.82 E-value=2.5e-17 Score=177.78 Aligned_cols=273 Identities=15% Similarity=0.082 Sum_probs=180.4
Q ss_pred CeEEEEEecCc-EEEEEccCCCceeEeeeeccCcEEEEEEecCCCCCCCCCCccccCcEEEEEEcCCCCCCCCCCCcCCC
Q 003907 75 KQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHL 153 (787)
Q Consensus 75 ~~vL~lG~~~G-~qVWdv~~~~~~~ells~~dg~V~~v~~lP~P~~~~~~d~F~~srpLLavV~~d~~~~~~~~~~~~~~ 153 (787)
+.++++|..+| ++|||++ .+++...+..+. .+.++++.|+. ..|++....
T Consensus 2 ~~l~vs~~~d~~v~v~d~~-~~~~~~~~~~~~-~~~~~~~s~dg-------------~~l~~~~~~-------------- 52 (391)
T 1l0q_A 2 TFAYIANSESDNISVIDVT-SNKVTATIPVGS-NPMGAVISPDG-------------TKVYVANAH-------------- 52 (391)
T ss_dssp EEEEEEETTTTEEEEEETT-TTEEEEEEECSS-SEEEEEECTTS-------------SEEEEEEGG--------------
T ss_pred CEEEEEcCCCCEEEEEECC-CCeEEEEeecCC-CcceEEECCCC-------------CEEEEECCC--------------
Confidence 45777887765 9999996 466666666554 48899988742 245443311
Q ss_pred CCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCCcEEEEEecC--CeEEEEe--CCeEEEEECCCCceeEEEEe
Q 003907 154 GGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRSSVCMVRCSP--RIVAVGL--ATQIYCFDALTLENKFSVLT 229 (787)
Q Consensus 154 ~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~v~tL~f~s~V~sV~~s~--~~LaV~~--~~~I~iwD~~T~e~l~tl~t 229 (787)
.++|++||+++++.+..+..+..|..+++++ +.|+++. ++.|++||+.+++.+..+..
T Consensus 53 ------------------d~~i~v~d~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~ 114 (391)
T 1l0q_A 53 ------------------SNDVSIIDTATNNVIATVPAGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKT 114 (391)
T ss_dssp ------------------GTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC
T ss_pred ------------------CCeEEEEECCCCeEEEEEECCCCccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeC
Confidence 2589999999999999999989999999987 5665544 36899999999988777664
Q ss_pred cCCcccCCCCccccccccceeEEcc--ceEEEe-cCCceecCcceeccccCCCCCcCCCcCCCCCceeEeeehhhhhhhh
Q 003907 230 YPVPQLAGQGAVGINVGYGPMAVGP--RWLAYA-SNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFA 306 (787)
Q Consensus 230 ~p~p~~~~~~~~~~~~~~~~lAlsp--r~LAya-s~~~~l~~~g~~s~q~lt~~~~s~s~sp~~g~lva~~a~d~sk~la 306 (787)
+.. ...++++| ++|+++ ..+.. ...|+..+ +....
T Consensus 115 ~~~--------------~~~~~~s~dg~~l~~~~~~~~~-----v~~~d~~~------------~~~~~----------- 152 (391)
T 1l0q_A 115 GKS--------------PLGLALSPDGKKLYVTNNGDKT-----VSVINTVT------------KAVIN----------- 152 (391)
T ss_dssp SSS--------------EEEEEECTTSSEEEEEETTTTE-----EEEEETTT------------TEEEE-----------
T ss_pred CCC--------------cceEEECCCCCEEEEEeCCCCE-----EEEEECCC------------CcEEE-----------
Confidence 332 24578887 566443 32211 11122111 11100
Q ss_pred cccceeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEE
Q 003907 307 AGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVT 386 (787)
Q Consensus 307 ~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~v~~~~aH~~pIsaLaFSpdG~lLAT 386 (787)
.+.. ........++++.+.. ...+..+|.|++||+.+++.+..+.. ...+.+++|+|+|++|++
T Consensus 153 -----~~~~-------~~~~~~~~~~~dg~~l---~~~~~~~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~~~~g~~l~~ 216 (391)
T 1l0q_A 153 -----TVSV-------GRSPKGIAVTPDGTKV---YVANFDSMSISVIDTVTNSVIDTVKV-EAAPSGIAVNPEGTKAYV 216 (391)
T ss_dssp -----EEEC-------CSSEEEEEECTTSSEE---EEEETTTTEEEEEETTTTEEEEEEEC-SSEEEEEEECTTSSEEEE
T ss_pred -----EEec-------CCCcceEEECCCCCEE---EEEeCCCCEEEEEECCCCeEEEEEec-CCCccceEECCCCCEEEE
Confidence 0000 0001112233333221 12456789999999999988877764 567899999999999999
Q ss_pred EEc--CCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEE-EEEeCCCeEEEEeCCCC
Q 003907 387 ASV--YGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWI-AIVSSKGTCHVFVLSPF 463 (787)
Q Consensus 387 aS~--dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~L-As~S~dgTVhIwdl~~~ 463 (787)
++. .+..|++||+.. + ..+..+..+ ..+.+++|+|||++| ++++.|++|++||+...
T Consensus 217 ~~~~~~~~~v~~~d~~~-------~----------~~~~~~~~~---~~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~ 276 (391)
T 1l0q_A 217 TNVDKYFNTVSMIDTGT-------N----------KITARIPVG---PDPAGIAVTPDGKKVYVALSFXNTVSVIDTATN 276 (391)
T ss_dssp EEECSSCCEEEEEETTT-------T----------EEEEEEECC---SSEEEEEECTTSSEEEEEETTTTEEEEEETTTT
T ss_pred EecCcCCCcEEEEECCC-------C----------eEEEEEecC---CCccEEEEccCCCEEEEEcCCCCEEEEEECCCC
Confidence 884 355699999854 2 345555432 247899999999988 56688999999999874
Q ss_pred CCccccccc
Q 003907 464 GGDSGFQTL 472 (787)
Q Consensus 464 gg~~~~~~H 472 (787)
.....+..|
T Consensus 277 ~~~~~~~~~ 285 (391)
T 1l0q_A 277 TITATMAVG 285 (391)
T ss_dssp EEEEEEECS
T ss_pred cEEEEEECC
Confidence 333334433
No 92
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=99.82 E-value=7.7e-18 Score=181.84 Aligned_cols=221 Identities=11% Similarity=0.090 Sum_probs=159.0
Q ss_pred ceeEeeeeccCcEEEEEEecCCCCCCCCCCccccCcEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEE
Q 003907 96 NFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAV 175 (787)
Q Consensus 96 ~~~ells~~dg~V~~v~~lP~P~~~~~~d~F~~srpLLavV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV 175 (787)
.+...+..|.++|.++++.|+. ..+|++.+. +++|
T Consensus 64 ~~~~~~~~h~~~v~~~~~~~~~------------~~~l~s~~~---------------------------------dg~i 98 (383)
T 3ei3_B 64 KLHRTASPFDRRVTSLEWHPTH------------PTTVAVGSK---------------------------------GGDI 98 (383)
T ss_dssp EEEEEECCCSSCEEEEEECSSC------------TTEEEEEEB---------------------------------TSCE
T ss_pred ceEEeccCCCCCEEEEEECCCC------------CCEEEEEcC---------------------------------CCeE
Confidence 3455667888999999999741 126665331 2589
Q ss_pred EEEECCCCeEEEEEe---CCCcEEEEEecC---CeEEEEe-CCeEEEEECCCCceeEEEEecCCcccCCCCccccccccc
Q 003907 176 RFYSFQSHCYEHVLR---FRSSVCMVRCSP---RIVAVGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYG 248 (787)
Q Consensus 176 rlWdlktg~~v~tL~---f~s~V~sV~~s~---~~LaV~~-~~~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~~~~ 248 (787)
+|||+.+++....++ +...|.++++++ ++|+++. ++.|++||+.+ +.+..+..+.... ....
T Consensus 99 ~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~~----------~~v~ 167 (383)
T 3ei3_B 99 ILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSG-SVIQVFAKTDSWD----------YWYC 167 (383)
T ss_dssp EEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEEEEEETTS-CEEEEEECCCCSS----------CCEE
T ss_pred EEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCC-CceEEEeccCCCC----------CCeE
Confidence 999999999888886 456999999987 5677655 56899999986 4555555432100 0012
Q ss_pred eeEEccceEEEecCCceecCcceeccccCCCCCcCCCcCCCCCceeEeeehhhhhhhhcccceeecccccccCCCCCCCC
Q 003907 249 PMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSP 328 (787)
Q Consensus 249 ~lAlspr~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~ 328 (787)
.++++| +. .
T Consensus 168 ~~~~~~-------~~---------------------------~------------------------------------- 176 (383)
T 3ei3_B 168 CVDVSV-------SR---------------------------Q------------------------------------- 176 (383)
T ss_dssp EEEEET-------TT---------------------------T-------------------------------------
T ss_pred EEEECC-------CC---------------------------C-------------------------------------
Confidence 223221 11 0
Q ss_pred cccCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCC-EEEEEEcCCCEEEEEeCCCCcccCC
Q 003907 329 VSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGT-LLVTASVYGNNINIFRIMPSCMRSG 407 (787)
Q Consensus 329 ~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~v~~~~aH~~pIsaLaFSpdG~-lLATaS~dG~~IrVWdi~~~~~~~~ 407 (787)
.++.+..||.|++||+ +++.+..+.+|..+|.+++|+|+|+ +|++++.|+ .|+|||+....
T Consensus 177 ------------~l~~~~~d~~i~i~d~-~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~-~i~iwd~~~~~---- 238 (383)
T 3ei3_B 177 ------------MLATGDSTGRLLLLGL-DGHEIFKEKLHKAKVTHAEFNPRCDWLMATSSVDA-TVKLWDLRNIK---- 238 (383)
T ss_dssp ------------EEEEEETTSEEEEEET-TSCEEEEEECSSSCEEEEEECSSCTTEEEEEETTS-EEEEEEGGGCC----
T ss_pred ------------EEEEECCCCCEEEEEC-CCCEEEEeccCCCcEEEEEECCCCCCEEEEEeCCC-EEEEEeCCCCC----
Confidence 0123456899999999 5778899999999999999999999 999999966 59999995410
Q ss_pred CCCCccccCCcceEEEEEecccccccEEEEEEcc-CCCEEEEEeCCCeEEEEeCCCCCCcccccccc
Q 003907 408 SGNHKYDWNSSHVHLYKLHRGITSATIQDICFSH-YSQWIAIVSSKGTCHVFVLSPFGGDSGFQTLS 473 (787)
Q Consensus 408 ~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSp-Dg~~LAs~S~dgTVhIwdl~~~gg~~~~~~H~ 473 (787)
.....+..+ + +...|.+++|+| |+++|++++.|++|+|||+........+..|.
T Consensus 239 ---------~~~~~~~~~--~-~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~ 293 (383)
T 3ei3_B 239 ---------DKNSYIAEM--P-HEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHP 293 (383)
T ss_dssp ---------STTCEEEEE--E-CSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECC
T ss_pred ---------cccceEEEe--c-CCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCcccccccccc
Confidence 001344444 2 345799999999 99999999999999999999876666666664
No 93
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=99.81 E-value=2.4e-18 Score=185.47 Aligned_cols=267 Identities=13% Similarity=0.089 Sum_probs=174.6
Q ss_pred eeEeeeeccCcEEEEEEecCCCCCCCCCCccccCcEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEE
Q 003907 97 FNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVR 176 (787)
Q Consensus 97 ~~ells~~dg~V~~v~~lP~P~~~~~~d~F~~srpLLavV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVr 176 (787)
+..++..|.++|.+|++.| .+|++.+. +++|+
T Consensus 8 ~~~~~~~h~~~i~~~~~~~---------------~~l~s~~~---------------------------------dg~i~ 39 (397)
T 1sq9_A 8 TANAGKAHDADIFSVSACN---------------SFTVSCSG---------------------------------DGYLK 39 (397)
T ss_dssp EEEESSCSSSCEEEEEECS---------------SEEEEEET---------------------------------TSEEE
T ss_pred hhhhhhhhhcCeEEEEecC---------------CeEEEEcC---------------------------------CCEEE
Confidence 3566778999999999875 16655321 26899
Q ss_pred EEECCCCe------EEEEEeC-CCcEEEEEecC---------CeEEEEe-CCeEEEEECCCCce-----eEEEEecCCcc
Q 003907 177 FYSFQSHC------YEHVLRF-RSSVCMVRCSP---------RIVAVGL-ATQIYCFDALTLEN-----KFSVLTYPVPQ 234 (787)
Q Consensus 177 lWdlktg~------~v~tL~f-~s~V~sV~~s~---------~~LaV~~-~~~I~iwD~~T~e~-----l~tl~t~p~p~ 234 (787)
+||+.+++ .+.++.. ...|.++++++ ++|+++. ++.|++||+.+++. +..+..++...
T Consensus 40 iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~ 119 (397)
T 1sq9_A 40 VWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDM 119 (397)
T ss_dssp EEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTG
T ss_pred EEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEEEEEcCCCCEEEEEccCCcccccccceeeccccccc
Confidence 99999988 6777764 46899999975 4666654 56899999998886 67776653100
Q ss_pred cCCCCccccccccceeEEc----c--ce-EEEecCCceecCcceeccccCC------CCCcCCCcCCCCCceeEeeehhh
Q 003907 235 LAGQGAVGINVGYGPMAVG----P--RW-LAYASNTLLLSNSGRLSPQNLT------PSGVSPSTSPGGSSLVARYAMEH 301 (787)
Q Consensus 235 ~~~~~~~~~~~~~~~lAls----p--r~-LAyas~~~~l~~~g~~s~q~lt------~~~~s~s~sp~~g~lva~~a~d~ 301 (787)
. ......++++ | ++ |++++.+..+ ..|+..+ ...+. +.|.
T Consensus 120 ~--------~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i-----~iwd~~~~~~~~~~~~~~--~~~~------------ 172 (397)
T 1sq9_A 120 K--------KHSFWALKWGASNDRLLSHRLVATDVKGTT-----YIWKFHPFADESNSLTLN--WSPT------------ 172 (397)
T ss_dssp G--------GSCEEEEEEECCC----CEEEEEEETTSCE-----EEEEEESSSSHHHHTTTC--CCCE------------
T ss_pred C--------CCcEEEEEEeeccCCCCceEEEEEeCCCcE-----EEEeCCccccccccceee--ccCc------------
Confidence 0 0013567888 6 67 8877654211 1232211 00000 0000
Q ss_pred hhhhhcccceeecccccc-cCCCCCCCCcccCCccccccccccccCCCceEEEEECCCCcEEEEecc---C---CCCeEE
Q 003907 302 SKQFAAGLSKTLSKYCQE-LLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKA---H---TSPISA 374 (787)
Q Consensus 302 sk~la~G~~ktls~~~~~-l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~v~~~~a---H---~~pIsa 374 (787)
.++...... .........+.++++. .++.+..+|.|++||+.+++.+..+.. | ..+|.+
T Consensus 173 ---------~~~~~~~~~~~~~~~~i~~~~~~~~~-----~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~ 238 (397)
T 1sq9_A 173 ---------LELQGTVESPMTPSQFATSVDISERG-----LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRS 238 (397)
T ss_dssp ---------EEEEEEECCSSSSCCCCCEEEECTTS-----EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEE
T ss_pred ---------ceeeeeeccccCCCCCceEEEECCCc-----eEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccce
Confidence 011000000 0001112223333322 345678899999999999999999999 9 999999
Q ss_pred EEECCCCCEEEEEEcC---CCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEeccc-----------ccccEEEEEEc
Q 003907 375 LCFDPSGTLLVTASVY---GNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGI-----------TSATIQDICFS 440 (787)
Q Consensus 375 LaFSpdG~lLATaS~d---G~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~-----------~~a~I~slaFS 440 (787)
++|+|+|++|++++.| | .|+|||+.. + ..+..+.... +...|.+++|+
T Consensus 239 i~~~~~~~~l~~~~~d~~~g-~i~i~d~~~-------~----------~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 300 (397)
T 1sq9_A 239 VKFSPQGSLLAIAHDSNSFG-CITLYETEF-------G----------ERIGSLSVPTHSSQASLGEFAHSSWVMSLSFN 300 (397)
T ss_dssp EEECSSTTEEEEEEEETTEE-EEEEEETTT-------C----------CEEEEECBC--------CCBSBSSCEEEEEEC
T ss_pred EEECCCCCEEEEEecCCCCc-eEEEEECCC-------C----------cccceeccCcccccccccccccCCcEEEEEEC
Confidence 9999999999999996 5 599999854 2 3455553200 34579999999
Q ss_pred cCCCEEEEEeCCCeEEEEeCCCCCCccccc
Q 003907 441 HYSQWIAIVSSKGTCHVFVLSPFGGDSGFQ 470 (787)
Q Consensus 441 pDg~~LAs~S~dgTVhIwdl~~~gg~~~~~ 470 (787)
||+++|++++.||+|+|||+........+.
T Consensus 301 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 330 (397)
T 1sq9_A 301 DSGETLCSAGWDGKLRFWDVKTKERITTLN 330 (397)
T ss_dssp SSSSEEEEEETTSEEEEEETTTTEEEEEEE
T ss_pred CCCCEEEEEeCCCeEEEEEcCCCceeEEEe
Confidence 999999999999999999998754444444
No 94
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=99.81 E-value=2.4e-17 Score=173.94 Aligned_cols=263 Identities=11% Similarity=0.051 Sum_probs=164.5
Q ss_pred eeEeeeeccCcEEEEEEecCCCCCCCCCCccccCcEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEE
Q 003907 97 FNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVR 176 (787)
Q Consensus 97 ~~ells~~dg~V~~v~~lP~P~~~~~~d~F~~srpLLavV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVr 176 (787)
+..++..|.++|..+++.|+. +.|+++++.+ ..+++|+
T Consensus 10 ~~~~~~~h~~~v~~~~~~p~~-------------~~l~~~~s~~-----------------------------~~d~~v~ 47 (357)
T 3i2n_A 10 IAHIQKGFNYTVFDCKWVPCS-------------AKFVTMGNFA-----------------------------RGTGVIQ 47 (357)
T ss_dssp EEEEEEECSSCEEEEEECTTS-------------SEEEEEEC-------------------------------CCCEEEE
T ss_pred hhhhccCCCCceEEEEEcCCC-------------ceEEEecCcc-----------------------------CCCcEEE
Confidence 455667799999999999741 2344333210 0136899
Q ss_pred EEECCCCeEEEEE--eCCCcEEEEEecC-----CeEEEEe-CCeEEEEECCCCc-eeEEEEecCCcccCCCCcccccccc
Q 003907 177 FYSFQSHCYEHVL--RFRSSVCMVRCSP-----RIVAVGL-ATQIYCFDALTLE-NKFSVLTYPVPQLAGQGAVGINVGY 247 (787)
Q Consensus 177 lWdlktg~~v~tL--~f~s~V~sV~~s~-----~~LaV~~-~~~I~iwD~~T~e-~l~tl~t~p~p~~~~~~~~~~~~~~ 247 (787)
|||+.+++..... .+...|.++++++ ++|+++. ++.|++||+.+++ .+..+..|..+ .
T Consensus 48 iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~-------------v 114 (357)
T 3i2n_A 48 LYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEI-------------I 114 (357)
T ss_dssp EEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCSSCSEEECCCSSC-------------E
T ss_pred EEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCccEEEEEecccc-------------e
Confidence 9999999875544 4667999999987 5666665 5689999999988 77777766553 1
Q ss_pred cee------EEcc--ceEEEecCCceecCcceeccccCCCCCcCCCcCCCCCceeEeeehhhhhhhhcccceeecccccc
Q 003907 248 GPM------AVGP--RWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQE 319 (787)
Q Consensus 248 ~~l------Alsp--r~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~ 319 (787)
..+ +++| ++|++++.+.. ...|+..+... .+ +.+..+..
T Consensus 115 ~~~~~~~~~~~s~~~~~l~~~~~d~~-----i~vwd~~~~~~-----------~~----------------~~~~~~~~- 161 (357)
T 3i2n_A 115 NAIDGIGGLGIGEGAPEIVTGSRDGT-----VKVWDPRQKDD-----------PV----------------ANMEPVQG- 161 (357)
T ss_dssp EEEEEESGGGCC-CCCEEEEEETTSC-----EEEECTTSCSS-----------CS----------------EEECCCTT-
T ss_pred EEEeeccccccCCCccEEEEEeCCCe-----EEEEeCCCCCC-----------cc----------------eeccccCC-
Confidence 233 3345 57888765421 11233222100 00 00000000
Q ss_pred cCCCCCCCCcccCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECC---CCCEEEEEEcCCCEEEE
Q 003907 320 LLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDP---SGTLLVTASVYGNNINI 396 (787)
Q Consensus 320 l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~v~~~~aH~~pIsaLaFSp---dG~lLATaS~dG~~IrV 396 (787)
..........+...+.+.+..++.+..+|.|++||+.+++.+ ....|..+|.+++|+| +|.+|++++.+| .|+|
T Consensus 162 -~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg-~i~i 238 (357)
T 3i2n_A 162 -ENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALR-WETNIKNGVCSLEFDRKDISMNKLVATSLEG-KFHV 238 (357)
T ss_dssp -SCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEE-EEEECSSCEEEEEESCSSSSCCEEEEEESTT-EEEE
T ss_pred -CCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCcee-eecCCCCceEEEEcCCCCCCCCEEEEECCCC-eEEE
Confidence 000000011111111122223456778999999999998864 4467899999999999 999999999966 5999
Q ss_pred EeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCC-EEEEEeCCCeEEEEeCCCCC
Q 003907 397 FRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQ-WIAIVSSKGTCHVFVLSPFG 464 (787)
Q Consensus 397 Wdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~-~LAs~S~dgTVhIwdl~~~g 464 (787)
||+.... . ........+ .+ +...|.+++|+||++ +|++++.||+|+|||+....
T Consensus 239 ~d~~~~~-----~-------~~~~~~~~~-~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 293 (357)
T 3i2n_A 239 FDMRTQH-----P-------TKGFASVSE-KA-HKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPI 293 (357)
T ss_dssp EEEEEEE-----T-------TTEEEEEEE-EC-CSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCS
T ss_pred EeCcCCC-----c-------ccceeeecc-CC-CcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCc
Confidence 9985310 0 000111122 23 345799999999999 89999999999999997643
No 95
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=99.81 E-value=3.6e-18 Score=178.41 Aligned_cols=225 Identities=14% Similarity=0.175 Sum_probs=158.2
Q ss_pred CCeEEEEEecCc-EEEEEccCCCceeEeeeeccCcEEEEEEecCCCCCCCCCCccccCcEEEEEEcCCCCCCCCCCCcCC
Q 003907 74 FKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSH 152 (787)
Q Consensus 74 ~~~vL~lG~~~G-~qVWdv~~~~~~~ells~~dg~V~~v~~lP~P~~~~~~d~F~~srpLLavV~~d~~~~~~~~~~~~~ 152 (787)
+++.|+++...+ +.+|+.......... ..|.++|.++.+.|+ ..+|++ +++
T Consensus 20 dg~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~~~~-------------~~~l~~-~~d------------- 71 (337)
T 1gxr_A 20 DGQMQPVPFPPDALIGPGIPRHARQINT-LNHGEVVCAVTISNP-------------TRHVYT-GGK------------- 71 (337)
T ss_dssp SSCEEECCCCTTSSSSTTCCSEEEEEEE-ECCSSCCCEEEECSS-------------SSEEEE-ECB-------------
T ss_pred CCCEEEeecCCCcEeccccCCcccccee-ccCCCceEEEEEecC-------------CcEEEE-cCC-------------
Confidence 467777777554 666655433322222 367889999999864 236654 221
Q ss_pred CCCcccCCcCCCCCCCCCCCCEEEEEECCCCe---EEEEEe---CCCcEEEEEecC--CeEEEEe-CCeEEEEECCCCc-
Q 003907 153 LGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHC---YEHVLR---FRSSVCMVRCSP--RIVAVGL-ATQIYCFDALTLE- 222 (787)
Q Consensus 153 ~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~---~v~tL~---f~s~V~sV~~s~--~~LaV~~-~~~I~iwD~~T~e- 222 (787)
++|++||+.+++ .+..+. ....|.++++++ ++|+++. ++.|++||+.+++
T Consensus 72 --------------------g~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~ 131 (337)
T 1gxr_A 72 --------------------GCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTP 131 (337)
T ss_dssp --------------------SEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--
T ss_pred --------------------CeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCc
Confidence 589999998765 334443 456899999987 5677655 5689999999876
Q ss_pred -eeEEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCcceeccccCCCCCcCCCcCCCCCceeEeeehhh
Q 003907 223 -NKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEH 301 (787)
Q Consensus 223 -~l~tl~t~p~p~~~~~~~~~~~~~~~~lAlspr~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~sp~~g~lva~~a~d~ 301 (787)
....+..+..+ ...++++| +. .
T Consensus 132 ~~~~~~~~~~~~-------------i~~~~~~~-------~~---------------------------~---------- 154 (337)
T 1gxr_A 132 RIKAELTSSAPA-------------CYALAISP-------DS---------------------------K---------- 154 (337)
T ss_dssp EEEEEEECSSSC-------------EEEEEECT-------TS---------------------------S----------
T ss_pred ceeeecccCCCc-------------eEEEEECC-------CC---------------------------C----------
Confidence 33333332221 11223221 10 0
Q ss_pred hhhhhcccceeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCC
Q 003907 302 SKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSG 381 (787)
Q Consensus 302 sk~la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~v~~~~aH~~pIsaLaFSpdG 381 (787)
.++.+..+|.|++||+.+++.+..+..|..+|.+++|+|+|
T Consensus 155 ---------------------------------------~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~ 195 (337)
T 1gxr_A 155 ---------------------------------------VCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDG 195 (337)
T ss_dssp ---------------------------------------EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTS
T ss_pred ---------------------------------------EEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCC
Confidence 01123467899999999999999999999999999999999
Q ss_pred CEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEeCC
Q 003907 382 TLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLS 461 (787)
Q Consensus 382 ~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~ 461 (787)
++|++++.+| .|++||+.. + ..+..+. ....|.+++|+||+++|++++.|++|++|++.
T Consensus 196 ~~l~~~~~dg-~i~~~d~~~-------~----------~~~~~~~---~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~ 254 (337)
T 1gxr_A 196 TKLWTGGLDN-TVRSWDLRE-------G----------RQLQQHD---FTSQIFSLGYCPTGEWLAVGMESSNVEVLHVN 254 (337)
T ss_dssp SEEEEEETTS-EEEEEETTT-------T----------EEEEEEE---CSSCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred CEEEEEecCC-cEEEEECCC-------C----------ceEeeec---CCCceEEEEECCCCCEEEEEcCCCcEEEEECC
Confidence 9999999966 499999854 2 3444443 23569999999999999999999999999997
Q ss_pred CC
Q 003907 462 PF 463 (787)
Q Consensus 462 ~~ 463 (787)
..
T Consensus 255 ~~ 256 (337)
T 1gxr_A 255 KP 256 (337)
T ss_dssp SS
T ss_pred CC
Confidence 64
No 96
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=99.80 E-value=9.4e-18 Score=182.99 Aligned_cols=257 Identities=17% Similarity=0.174 Sum_probs=162.4
Q ss_pred cEEEEEEeeccCCCCCCCeEEEEEec--------CcEEEEEccCCCce--------eE-eeeeccCcEEEEEEecCCCCC
Q 003907 58 QVTWAGFDRLEYGPSVFKQVLLLGYQ--------NGFQVLDVEDASNF--------NE-LVSKRDGPVSFLQMQPFPVKD 120 (787)
Q Consensus 58 ~v~wa~Fd~l~~~~~~~~~vL~lG~~--------~G~qVWdv~~~~~~--------~e-lls~~dg~V~~v~~lP~P~~~ 120 (787)
.|..+.|-. ++++|+.|.. |.++||+++..... .+ .++.++..|.++...
T Consensus 16 PV~sv~fs~-------dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~------ 82 (365)
T 4h5i_A 16 PAYGAKFLN-------NDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDAS------ 82 (365)
T ss_dssp CEEEEEEEE-------TTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEE------
T ss_pred CEEEEEEeC-------CCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeC------
Confidence 488888853 4788888853 23899999754321 11 244555566665543
Q ss_pred CCCCCccccCcEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCe-E---EEEEeCC----
Q 003907 121 DGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHC-Y---EHVLRFR---- 192 (787)
Q Consensus 121 ~~~d~F~~srpLLavV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~-~---v~tL~f~---- 192 (787)
. .+++. ++++. ..-+..|+ ..+++|+|++.+++ . +....+.
T Consensus 83 -------~--~~~~~-g~~~~-----------~~~l~s~~----------~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 131 (365)
T 4h5i_A 83 -------K--GIILV-GCNEN-----------STKITQGK----------GNKHLRKFKYDKVNDQLEFLTSVDFDASTN 131 (365)
T ss_dssp -------T--TEEEE-ECCCC-----------HHHHHHTS----------CCCCEEEEEEETTTTEEEEEEEECSSCCCC
T ss_pred -------C--CEEEE-EECCC-----------ccEEEEec----------CCCcEEEEEecCCCceEEEeeeeceeecCC
Confidence 1 24433 22210 00012222 23689999987643 2 2233322
Q ss_pred --CcEEEEEecC--CeEEEEe---CCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEcc--ceEEEecCC
Q 003907 193 --SSVCMVRCSP--RIVAVGL---ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP--RWLAYASNT 263 (787)
Q Consensus 193 --s~V~sV~~s~--~~LaV~~---~~~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~~~~~lAlsp--r~LAyas~~ 263 (787)
..+..|+|+| ++||++. +..|+|||+.+++.+.++.. ..+ ...++++| ++||+++
T Consensus 132 ~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~~~-~~~-------------V~~v~fspdg~~l~s~s-- 195 (365)
T 4h5i_A 132 ADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFEIET-RGE-------------VKDLHFSTDGKVVAYIT-- 195 (365)
T ss_dssp TTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEEEEC-SSC-------------CCEEEECTTSSEEEEEC--
T ss_pred cccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEEeCC-CCc-------------eEEEEEccCCceEEecc--
Confidence 2488999998 6777654 45799999999998888753 221 23456655 3333332
Q ss_pred ceecCcceeccccCCCCCcCCCcCCCCCceeEeeehhhhhhhhcccceeecccccccCCCCCCCCcccCCcccccccccc
Q 003907 264 LLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGA 343 (787)
Q Consensus 264 ~~l~~~g~~s~q~lt~~~~s~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~ 343 (787)
T Consensus 196 -------------------------------------------------------------------------------- 195 (365)
T 4h5i_A 196 -------------------------------------------------------------------------------- 195 (365)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCCCceEEEEECCCCcEEE--EeccCCCCeEEEEECCCCCEEEEEEcCCC---EEEEEeCCCCcccCCCCCCccccCCc
Q 003907 344 DMDNAGIVVVKDFVTRAIIS--QFKAHTSPISALCFDPSGTLLVTASVYGN---NINIFRIMPSCMRSGSGNHKYDWNSS 418 (787)
Q Consensus 344 s~~~dG~V~IwDl~s~~~v~--~~~aH~~pIsaLaFSpdG~lLATaS~dG~---~IrVWdi~~~~~~~~~g~~~~~~~~s 418 (787)
++.+++|+..+++.+. ....|...|.+++|+|+|++|++++.++. .+++|++.... ..
T Consensus 196 ----~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~-------------~~ 258 (365)
T 4h5i_A 196 ----GSSLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGN-------------TS 258 (365)
T ss_dssp ----SSCEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTE-------------EE
T ss_pred ----ceeEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccce-------------ec
Confidence 2345566666666543 34579999999999999999999998764 58889874310 00
Q ss_pred ceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEeCCCCCCccc-ccccc
Q 003907 419 HVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSG-FQTLS 473 (787)
Q Consensus 419 ~~~l~~l~rG~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~~~gg~~~-~~~H~ 473 (787)
......+. + +...|++|+|||||++||+++.|++|+|||+........ +.+|.
T Consensus 259 ~~~~~~~~-~-~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~ 312 (365)
T 4h5i_A 259 VLRSKQVT-N-RFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQAHS 312 (365)
T ss_dssp EEEEEEEE-S-SCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTSSS
T ss_pred ceeeeeec-C-CCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCccc
Confidence 01223333 2 334699999999999999999999999999987544434 35674
No 97
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=99.80 E-value=1.3e-19 Score=194.56 Aligned_cols=200 Identities=13% Similarity=0.106 Sum_probs=127.1
Q ss_pred CEEEEEECCCC--eEEEEEeCC-CcEEEEEecC--CeEEEEe-CCeEEEEECCCCc---eeEEEEecCCcccCCCCcccc
Q 003907 173 TAVRFYSFQSH--CYEHVLRFR-SSVCMVRCSP--RIVAVGL-ATQIYCFDALTLE---NKFSVLTYPVPQLAGQGAVGI 243 (787)
Q Consensus 173 ~tVrlWdlktg--~~v~tL~f~-s~V~sV~~s~--~~LaV~~-~~~I~iwD~~T~e---~l~tl~t~p~p~~~~~~~~~~ 243 (787)
++|+|||+.++ +.+.++..+ ..|.++++++ ++|+++. ++.|++||+.+++ ....+..|..+
T Consensus 33 ~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~---------- 102 (377)
T 3dwl_C 33 NQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRA---------- 102 (377)
T ss_dssp SCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC------CCCCEEECCCCSSC----------
T ss_pred CEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEecccCCc----------
Confidence 58999999998 677777654 5899999987 5777765 5689999998876 22222222221
Q ss_pred ccccceeEEccceEEEecCCceecCcceeccccCCCCCcCCCcCCCCCceeEeeehhhhhhhhcccceeecccccccCCC
Q 003907 244 NVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPD 323 (787)
Q Consensus 244 ~~~~~~lAlspr~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~ 323 (787)
...++++| +. .
T Consensus 103 ---v~~~~~~~-------~~---------------------------~-------------------------------- 113 (377)
T 3dwl_C 103 ---ATFVRWSP-------NE---------------------------D-------------------------------- 113 (377)
T ss_dssp ---EEEEECCT-------TS---------------------------S--------------------------------
T ss_pred ---eEEEEECC-------CC---------------------------C--------------------------------
Confidence 11122211 00 0
Q ss_pred CCCCCcccCCccccccccccccCCCceEEEEECCCCc---EEEEecc-CCCCeEEEEECCCCCEEEEEEcCCCEEEEEeC
Q 003907 324 GSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRA---IISQFKA-HTSPISALCFDPSGTLLVTASVYGNNINIFRI 399 (787)
Q Consensus 324 ~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~---~v~~~~a-H~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi 399 (787)
.++.+..||.|+|||+.+++ .+..+.. |..+|.+++|+|+|++||+++.||+ |+|||+
T Consensus 114 -----------------~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~-i~iwd~ 175 (377)
T 3dwl_C 114 -----------------KFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCADRK-AYVLSA 175 (377)
T ss_dssp -----------------CCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEEESSSC-EEEEEE
T ss_pred -----------------EEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEEeCCCE-EEEEEE
Confidence 12234568999999999877 4778887 9999999999999999999999776 999998
Q ss_pred CCCcccCCCCCCccccCC---cceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEeCCCCCC----ccccccc
Q 003907 400 MPSCMRSGSGNHKYDWNS---SHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGG----DSGFQTL 472 (787)
Q Consensus 400 ~~~~~~~~~g~~~~~~~~---s~~~l~~l~rG~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~~~gg----~~~~~~H 472 (787)
....... ......+.. ....+..+ + +...|.+++|+|||++|++++.|++|+|||+..... ...+..|
T Consensus 176 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~--~-~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~ 250 (377)
T 3dwl_C 176 YVRDVDA--KPEASVWGSRLPFNTVCAEY--P-SGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPRALITVKLS 250 (377)
T ss_dssp CCSSCC---CCCSCSSCSCCCEEEEEECC--C-CSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTSCEEECCCEECS
T ss_pred EecccCC--Cccccccccccchhhhhhcc--c-CCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCcceeeEeecCC
Confidence 5310000 000000100 11233333 3 445799999999999999999999999999987665 4455566
Q ss_pred cC
Q 003907 473 SS 474 (787)
Q Consensus 473 ~~ 474 (787)
..
T Consensus 251 ~~ 252 (377)
T 3dwl_C 251 QL 252 (377)
T ss_dssp SS
T ss_pred CC
Confidence 43
No 98
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=99.80 E-value=1.3e-17 Score=175.62 Aligned_cols=237 Identities=13% Similarity=0.181 Sum_probs=170.2
Q ss_pred CCCCcEEEEEEeeccCCCCCCCe-EEEEEecCc-EEEEEc-cCCCceeEeeee--ccCcEEEEEEecCCCCCCCCCCccc
Q 003907 54 DLKDQVTWAGFDRLEYGPSVFKQ-VLLLGYQNG-FQVLDV-EDASNFNELVSK--RDGPVSFLQMQPFPVKDDGCEGFRK 128 (787)
Q Consensus 54 ~~~~~v~wa~Fd~l~~~~~~~~~-vL~lG~~~G-~qVWdv-~~~~~~~ells~--~dg~V~~v~~lP~P~~~~~~d~F~~ 128 (787)
.+.+.|..+.|.. +++ .|++|..+| +++||+ +. +.. ..+.. |.++|.++.+.| .
T Consensus 54 ~~~~~v~~~~~~~-------~~~~~l~~~~~dg~i~~wd~~~~-~~~-~~~~~~~~~~~v~~l~~~~-~----------- 112 (342)
T 1yfq_A 54 RYKHPLLCCNFID-------NTDLQIYVGTVQGEILKVDLIGS-PSF-QALTNNEANLGICRICKYG-D----------- 112 (342)
T ss_dssp ECSSCEEEEEEEE-------SSSEEEEEEETTSCEEEECSSSS-SSE-EECBSCCCCSCEEEEEEET-T-----------
T ss_pred ecCCceEEEEECC-------CCCcEEEEEcCCCeEEEEEeccC-Cce-EeccccCCCCceEEEEeCC-C-----------
Confidence 4677888888874 256 777777766 999999 64 444 55666 889999999986 2
Q ss_pred cCcEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCC---------CeEEEEEeCCCcEEEEE
Q 003907 129 LHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQS---------HCYEHVLRFRSSVCMVR 199 (787)
Q Consensus 129 srpLLavV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlkt---------g~~v~tL~f~s~V~sV~ 199 (787)
.+|++.+. +++|++||+++ ++.+.++.+...|.+++
T Consensus 113 --~~l~s~~~---------------------------------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 157 (342)
T 1yfq_A 113 --DKLIAASW---------------------------------DGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMD 157 (342)
T ss_dssp --TEEEEEET---------------------------------TSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEE
T ss_pred --CEEEEEcC---------------------------------CCeEEEEcccccccccccccCCeeeEEeeCCceEEEE
Confidence 15554321 26899999998 88788888888999999
Q ss_pred ecCCeEEEEe-CCeEEEEECCC-CceeEEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCcceeccccC
Q 003907 200 CSPRIVAVGL-ATQIYCFDALT-LENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNL 277 (787)
Q Consensus 200 ~s~~~LaV~~-~~~I~iwD~~T-~e~l~tl~t~p~p~~~~~~~~~~~~~~~~lAlspr~LAyas~~~~l~~~g~~s~q~l 277 (787)
++++.|+++. ++.|++||+.+ ++........+.. .....++++|. +.
T Consensus 158 ~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~-----------~~i~~i~~~~~------~~-------------- 206 (342)
T 1yfq_A 158 TNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLK-----------YQIRDVALLPK------EQ-------------- 206 (342)
T ss_dssp ECSSEEEEEESTTEEEEEESSCCTTCCCEEEECSCS-----------SCEEEEEECSG------GG--------------
T ss_pred ecCCcEEEEeCCCeEEEEECCccccccceeeecCCC-----------CceeEEEECCC------CC--------------
Confidence 9997777765 45899999988 6543322221110 00112222110 10
Q ss_pred CCCCcCCCcCCCCCceeEeeehhhhhhhhcccceeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECC
Q 003907 278 TPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFV 357 (787)
Q Consensus 278 t~~~~s~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~ 357 (787)
. .++.+..+|.|+|||+.
T Consensus 207 -------------~-------------------------------------------------~l~~~~~dg~i~i~~~~ 224 (342)
T 1yfq_A 207 -------------E-------------------------------------------------GYACSSIDGRVAVEFFD 224 (342)
T ss_dssp -------------C-------------------------------------------------EEEEEETTSEEEEEECC
T ss_pred -------------C-------------------------------------------------EEEEEecCCcEEEEEEc
Confidence 0 01233468899999998
Q ss_pred CC------cEEEEeccCCC---------CeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEE
Q 003907 358 TR------AIISQFKAHTS---------PISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHL 422 (787)
Q Consensus 358 s~------~~v~~~~aH~~---------pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l 422 (787)
.. +.+..+..|.. +|.+++|+|+|++|++++.||. |+|||+.. + ..+
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~-i~vwd~~~-------~----------~~~ 286 (342)
T 1yfq_A 225 DQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGI-ISCWNLQT-------R----------KKI 286 (342)
T ss_dssp TTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSC-EEEEETTT-------T----------EEE
T ss_pred CCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCce-EEEEcCcc-------H----------hHh
Confidence 76 77888888866 9999999999999999999776 99999854 2 455
Q ss_pred EEEecccccccEEEEEEccCCCEEEEEeCCCe-EEEEeC
Q 003907 423 YKLHRGITSATIQDICFSHYSQWIAIVSSKGT-CHVFVL 460 (787)
Q Consensus 423 ~~l~rG~~~a~I~slaFSpDg~~LAs~S~dgT-VhIwdl 460 (787)
..+. +++...|.+++ ||+++|++++.||+ .+.|..
T Consensus 287 ~~~~-~~h~~~v~~~~--~~~~~l~s~s~Dg~~~~~~~~ 322 (342)
T 1yfq_A 287 KNFA-KFNEDSVVKIA--CSDNILCLATSDDTFKTNAAI 322 (342)
T ss_dssp EECC-CCSSSEEEEEE--ECSSEEEEEEECTHHHHCSSS
T ss_pred hhhh-cccCCCceEec--CCCCeEEEEecCCcccccccc
Confidence 5554 43256799999 99999999999999 666654
No 99
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=99.80 E-value=1.1e-18 Score=193.77 Aligned_cols=112 Identities=18% Similarity=0.297 Sum_probs=86.9
Q ss_pred ccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCC-EEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEE
Q 003907 344 DMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGT-LLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHL 422 (787)
Q Consensus 344 s~~~dG~V~IwDl~s~~~v~~~~aH~~pIsaLaFSpdG~-lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l 422 (787)
.+..+|.|++||+.. +.+..+.+|..+|.+|+|+|++. +|++++.|++ |+|||+.... .. ..+
T Consensus 226 ~g~~dg~i~~wd~~~-~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~-v~iwd~~~~~-----~~---------~~~ 289 (435)
T 4e54_B 226 TGDNVGNVILLNMDG-KELWNLRMHKKKVTHVALNPCCDWFLATASVDQT-VKIWDLRQVR-----GK---------ASF 289 (435)
T ss_dssp EECSSSBEEEEESSS-CBCCCSBCCSSCEEEEEECTTCSSEEEEEETTSB-CCEEETTTCC-----SS---------SCC
T ss_pred EEeCCCcEeeeccCc-ceeEEEecccceEEeeeecCCCceEEEEecCcce-eeEEeccccc-----cc---------ceE
Confidence 345789999999864 56778999999999999999986 7889999665 9999986421 00 011
Q ss_pred EEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEeCCCCCCcccccccc
Q 003907 423 YKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQTLS 473 (787)
Q Consensus 423 ~~l~rG~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~~~gg~~~~~~H~ 473 (787)
. ...+ +...|.+++|+|||++|++++.||+|+|||+........+..|.
T Consensus 290 ~-~~~~-h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~ 338 (435)
T 4e54_B 290 L-YSLP-HRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHP 338 (435)
T ss_dssp S-BCCB-CSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCC
T ss_pred E-Eeee-ccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEeccc
Confidence 1 1122 34579999999999999999999999999998877666666664
No 100
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.80 E-value=1.4e-16 Score=174.22 Aligned_cols=238 Identities=7% Similarity=0.008 Sum_probs=170.0
Q ss_pred CCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCceeEeeeeccCcEEEEEEecCCCCCCCCCCccccCcEE
Q 003907 55 LKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFL 133 (787)
Q Consensus 55 ~~~~v~wa~Fd~l~~~~~~~~~vL~lG~~~G-~qVWdv~~~~~~~ells~~dg~V~~v~~lP~P~~~~~~d~F~~srpLL 133 (787)
+.+.|..+.|.. .+++++++..+| +++||++. ++....+..+...+..+.+.|+. ..|
T Consensus 168 ~~~~v~~~~~~~-------~~~~~~s~~~d~~v~~~d~~~-~~~~~~~~~~~~~~~~~~~~~~~-------------~~l 226 (433)
T 3bws_A 168 KLGFVETISIPE-------HNELWVSQMQANAVHVFDLKT-LAYKATVDLTGKWSKILLYDPIR-------------DLV 226 (433)
T ss_dssp TCCEEEEEEEGG-------GTEEEEEEGGGTEEEEEETTT-CCEEEEEECSSSSEEEEEEETTT-------------TEE
T ss_pred cCCceeEEEEcC-------CCEEEEEECCCCEEEEEECCC-ceEEEEEcCCCCCeeEEEEcCCC-------------CEE
Confidence 444555555532 367888888765 99999964 55666677778899999998742 245
Q ss_pred EEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCCcEEEEEecC--CeEEEEe--
Q 003907 134 LVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRSSVCMVRCSP--RIVAVGL-- 209 (787)
Q Consensus 134 avV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~v~tL~f~s~V~sV~~s~--~~LaV~~-- 209 (787)
++.... .++|++||+++++.+..+.....+..+++++ +.|+++.
T Consensus 227 ~~~~~~--------------------------------~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~ 274 (433)
T 3bws_A 227 YCSNWI--------------------------------SEDISVIDRKTKLEIRKTDKIGLPRGLLLSKDGKELYIAQFS 274 (433)
T ss_dssp EEEETT--------------------------------TTEEEEEETTTTEEEEECCCCSEEEEEEECTTSSEEEEEEEE
T ss_pred EEEecC--------------------------------CCcEEEEECCCCcEEEEecCCCCceEEEEcCCCCEEEEEECC
Confidence 443311 2589999999999999998888899999987 5677655
Q ss_pred -------CCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCcceeccccCCCCCc
Q 003907 210 -------ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGV 282 (787)
Q Consensus 210 -------~~~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~~~~~lAlspr~LAyas~~~~l~~~g~~s~q~lt~~~~ 282 (787)
++.|++||+.+++.+..+..... ++.+++..+.
T Consensus 275 ~~~~~~~dg~i~~~d~~~~~~~~~~~~~~~---------------------~~~~~~~~~g------------------- 314 (433)
T 3bws_A 275 ASNQESGGGRLGIYSMDKEKLIDTIGPPGN---------------------KRHIVSGNTE------------------- 314 (433)
T ss_dssp SCTTCSCCEEEEEEETTTTEEEEEEEEEEC---------------------EEEEEECSST-------------------
T ss_pred CCccccCCCeEEEEECCCCcEEeeccCCCC---------------------cceEEECCCC-------------------
Confidence 45899999999876555421101 1122232211
Q ss_pred CCCcCCCCCceeEeeehhhhhhhhcccceeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECCCCcEE
Q 003907 283 SPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAII 362 (787)
Q Consensus 283 s~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~v 362 (787)
..+. ..+..++.|++||+.+++.+
T Consensus 315 --------~~l~------------------------------------------------~~~~~~~~v~v~d~~~~~~~ 338 (433)
T 3bws_A 315 --------NKIY------------------------------------------------VSDMCCSKIEVYDLKEKKVQ 338 (433)
T ss_dssp --------TEEE------------------------------------------------EEETTTTEEEEEETTTTEEE
T ss_pred --------CEEE------------------------------------------------EEecCCCEEEEEECCCCcEE
Confidence 0000 11245789999999999888
Q ss_pred EEeccCCCCeEEEEECCCCCEEEEEEcCC--------------CEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecc
Q 003907 363 SQFKAHTSPISALCFDPSGTLLVTASVYG--------------NNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRG 428 (787)
Q Consensus 363 ~~~~aH~~pIsaLaFSpdG~lLATaS~dG--------------~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG 428 (787)
..+. |...+.+++|+|+|++|++++.+. ..|++||+.. + ..+..+..
T Consensus 339 ~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~-------~----------~~~~~~~~- 399 (433)
T 3bws_A 339 KSIP-VFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTT-------D----------TVKEFWEA- 399 (433)
T ss_dssp EEEE-CSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTT-------T----------EEEEEEEC-
T ss_pred EEec-CCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCC-------C----------cEEEEecC-
Confidence 8876 678899999999999999888742 2699999854 2 34445543
Q ss_pred cccccEEEEEEccCCCEEEEEeC-CCeEEEEeCCC
Q 003907 429 ITSATIQDICFSHYSQWIAIVSS-KGTCHVFVLSP 462 (787)
Q Consensus 429 ~~~a~I~slaFSpDg~~LAs~S~-dgTVhIwdl~~ 462 (787)
...+.+++|+|||++|++++. |++|+||+++.
T Consensus 400 --~~~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~~ 432 (433)
T 3bws_A 400 --GNQPTGLDVSPDNRYLVISDFLDHQIRVYRRDG 432 (433)
T ss_dssp --SSSEEEEEECTTSCEEEEEETTTTEEEEEEETT
T ss_pred --CCCCceEEEcCCCCEEEEEECCCCeEEEEEecC
Confidence 245899999999999998875 99999999874
No 101
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=99.80 E-value=2.8e-18 Score=182.59 Aligned_cols=208 Identities=14% Similarity=0.137 Sum_probs=140.5
Q ss_pred eEeeeeccCcEEEEEEecCCCCCCCCCCccccCcEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEE
Q 003907 98 NELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRF 177 (787)
Q Consensus 98 ~ells~~dg~V~~v~~lP~P~~~~~~d~F~~srpLLavV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVrl 177 (787)
+.++..|.++|.++++.|+ ++ +||..+. +++|+|
T Consensus 6 ~~~~~~H~~~V~~v~~s~~-----------g~--~lasgs~---------------------------------D~~v~l 39 (316)
T 3bg1_A 6 NTVDTSHEDMIHDAQMDYY-----------GT--RLATCSS---------------------------------DRSVKI 39 (316)
T ss_dssp --------CCEEEEEECGG-----------GC--EEEEEET---------------------------------TTEEEE
T ss_pred eeecccccCeEEEeeEcCC-----------CC--EEEEEeC---------------------------------CCeEEE
Confidence 4566789999999999874 22 6665321 369999
Q ss_pred EECCCCe--EEEEEeCC-CcEEEEEecC----CeEEEEe-CCeEEEEECCCCc--eeEEEEecCCcccCCCCcccccccc
Q 003907 178 YSFQSHC--YEHVLRFR-SSVCMVRCSP----RIVAVGL-ATQIYCFDALTLE--NKFSVLTYPVPQLAGQGAVGINVGY 247 (787)
Q Consensus 178 Wdlktg~--~v~tL~f~-s~V~sV~~s~----~~LaV~~-~~~I~iwD~~T~e--~l~tl~t~p~p~~~~~~~~~~~~~~ 247 (787)
||+++++ .+.+++.+ ..|.+|+|++ ++|+++. +++|++||+.+++ ...++..|..+ .
T Consensus 40 wd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~-------------V 106 (316)
T 3bg1_A 40 FDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEKSHEHAGHDSS-------------V 106 (316)
T ss_dssp EEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCSSSCCCEEEEECCCSSC-------------C
T ss_pred EEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCcceEEEEccCCCCc-------------e
Confidence 9999875 46677654 6999999963 5777655 6789999998864 34444444332 1
Q ss_pred ceeEEccceEEEecCCceecCcceeccccCCCCCcCCCcCCCCCceeEeeehhhhhhhhcccceeecccccccCCCCCCC
Q 003907 248 GPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSS 327 (787)
Q Consensus 248 ~~lAlspr~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~ 327 (787)
..++++| +. .+.
T Consensus 107 ~~v~~~p-------~~--------------------------~g~----------------------------------- 118 (316)
T 3bg1_A 107 NSVCWAP-------HD--------------------------YGL----------------------------------- 118 (316)
T ss_dssp CEEEECC-------TT--------------------------TCS-----------------------------------
T ss_pred EEEEECC-------CC--------------------------CCc-----------------------------------
Confidence 2333322 10 000
Q ss_pred CcccCCccccccccccccCCCceEEEEECCCCc---EEEEeccCCCCeEEEEECCC-----------------CCEEEEE
Q 003907 328 PVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRA---IISQFKAHTSPISALCFDPS-----------------GTLLVTA 387 (787)
Q Consensus 328 ~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~---~v~~~~aH~~pIsaLaFSpd-----------------G~lLATa 387 (787)
.++.+..||+|+|||+..+. ....+.+|..+|.+++|+|+ +++|||+
T Consensus 119 -------------~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg 185 (316)
T 3bg1_A 119 -------------ILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASG 185 (316)
T ss_dssp -------------CEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECC
T ss_pred -------------EEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCCccccccccccCccccceEEEe
Confidence 12245678999999998763 24567899999999999998 5799999
Q ss_pred EcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCC----CEEEEEeCCCeEEEEeCCC
Q 003907 388 SVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYS----QWIAIVSSKGTCHVFVLSP 462 (787)
Q Consensus 388 S~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg----~~LAs~S~dgTVhIwdl~~ 462 (787)
+.|++ |+|||+... + ....+..+ .| +...|.+++|+||+ ++||+++.|++|+||++..
T Consensus 186 s~D~~-v~lWd~~~~------~--------~~~~~~~l-~~-h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~ 247 (316)
T 3bg1_A 186 GCDNL-IKLWKEEED------G--------QWKEEQKL-EA-HSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDD 247 (316)
T ss_dssp BTTSB-CCEEEECTT------S--------CEEEEECC-BC-CSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSS
T ss_pred cCCCe-EEEEEeCCC------C--------ccceeeec-cc-CCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccC
Confidence 99765 999998421 1 01233344 34 34579999999997 8999999999999999875
No 102
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=99.79 E-value=1.4e-17 Score=176.81 Aligned_cols=212 Identities=14% Similarity=0.161 Sum_probs=148.6
Q ss_pred ceeEeeeeccCcEEEEEEecCCCCCCCCCCccccCcEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEE
Q 003907 96 NFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAV 175 (787)
Q Consensus 96 ~~~ells~~dg~V~~v~~lP~P~~~~~~d~F~~srpLLavV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV 175 (787)
.+..++..|.++|.++++.|+ ..+||+.+. +++|
T Consensus 2 ~~~~~~~~h~~~v~~~~~s~~-------------~~~l~~~~~---------------------------------dg~i 35 (379)
T 3jrp_A 2 SMVVIANAHNELIHDAVLDYY-------------GKRLATCSS---------------------------------DKTI 35 (379)
T ss_dssp ---CCEEECCCCEEEEEECSS-------------SSEEEEEET---------------------------------TSCE
T ss_pred CccEEecCCcccEEEEEEcCC-------------CCEEEEEEC---------------------------------CCcE
Confidence 456778899999999999874 236665321 2589
Q ss_pred EEEECC--CCeEEEEEeCC-CcEEEEEec----CCeEEEEe-CCeEEEEECCCCc--eeEEEEecCCcccCCCCcccccc
Q 003907 176 RFYSFQ--SHCYEHVLRFR-SSVCMVRCS----PRIVAVGL-ATQIYCFDALTLE--NKFSVLTYPVPQLAGQGAVGINV 245 (787)
Q Consensus 176 rlWdlk--tg~~v~tL~f~-s~V~sV~~s----~~~LaV~~-~~~I~iwD~~T~e--~l~tl~t~p~p~~~~~~~~~~~~ 245 (787)
+|||+. +++.+..+..+ ..|.+++++ .++|+++. ++.|++||+.+++ .+..+..+..+
T Consensus 36 ~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~------------ 103 (379)
T 3jrp_A 36 KIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSAS------------ 103 (379)
T ss_dssp EEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSC------------
T ss_pred EEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCCceeEeeeecCCCcc------------
Confidence 999998 66777788754 689999997 46777765 5689999998886 33333333221
Q ss_pred ccceeEEccceEEEecCCceecCcceeccccCCCCCcCCCcCCCCCceeEeeehhhhhhhhcccceeecccccccCCCCC
Q 003907 246 GYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGS 325 (787)
Q Consensus 246 ~~~~lAlspr~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s 325 (787)
...++++| +. .+.
T Consensus 104 -v~~~~~~~-------~~--------------------------~~~--------------------------------- 116 (379)
T 3jrp_A 104 -VNSVQWAP-------HE--------------------------YGP--------------------------------- 116 (379)
T ss_dssp -EEEEEECC-------GG--------------------------GCS---------------------------------
T ss_pred -eEEEEeCC-------CC--------------------------CCC---------------------------------
Confidence 12233221 10 000
Q ss_pred CCCcccCCccccccccccccCCCceEEEEECCCCc--EEEEeccCCCCeEEEEECC-------------CCCEEEEEEcC
Q 003907 326 SSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRA--IISQFKAHTSPISALCFDP-------------SGTLLVTASVY 390 (787)
Q Consensus 326 ~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~--~v~~~~aH~~pIsaLaFSp-------------dG~lLATaS~d 390 (787)
.++.+..+|.|+|||+.++. ....+.+|..+|.+++|+| ++.+|++++.|
T Consensus 117 ---------------~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d 181 (379)
T 3jrp_A 117 ---------------LLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGAD 181 (379)
T ss_dssp ---------------EEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC----------CTTCEEEEEETT
T ss_pred ---------------EEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCC
Confidence 01234568999999998873 4556789999999999999 79999999997
Q ss_pred CCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccC---CCEEEEEeCCCeEEEEeCCCC
Q 003907 391 GNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHY---SQWIAIVSSKGTCHVFVLSPF 463 (787)
Q Consensus 391 G~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpD---g~~LAs~S~dgTVhIwdl~~~ 463 (787)
|. |+|||+... . .....+..+. + +...|.+++|+|| +++|++++.||+|+|||+...
T Consensus 182 g~-i~i~d~~~~-------~------~~~~~~~~~~-~-h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~ 241 (379)
T 3jrp_A 182 NL-VKIWKYNSD-------A------QTYVLESTLE-G-HSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNE 241 (379)
T ss_dssp SC-EEEEEEETT-------T------TEEEEEEEEC-C-CSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESST
T ss_pred Ce-EEEEEecCC-------C------cceeeEEEEe-c-ccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCC
Confidence 76 999998531 0 0012333343 3 3457999999999 999999999999999999763
No 103
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.79 E-value=6.8e-18 Score=182.99 Aligned_cols=116 Identities=14% Similarity=0.210 Sum_probs=82.8
Q ss_pred cccCCCce-EEEEECCCCcEEEEec-c-CCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccC---CCC-----CC
Q 003907 343 ADMDNAGI-VVVKDFVTRAIISQFK-A-HTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRS---GSG-----NH 411 (787)
Q Consensus 343 ~s~~~dG~-V~IwDl~s~~~v~~~~-a-H~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~---~~g-----~~ 411 (787)
++++.||+ |+|||+.+++.+..|. + |..+|.+++|+|+|++||+++.|+ .|+|||+....... ..+ ..
T Consensus 211 ~s~s~d~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~-~v~iw~~~~~~~~~~~~~~~~~~~~~~ 289 (355)
T 3vu4_A 211 ATCSQDGTIIRVFKTEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKW-TLHVFEIFNDQDNKRHALKGWINMKYF 289 (355)
T ss_dssp EEEETTCSEEEEEETTTCCEEEEEECTTCCSCEEEEEECTTSCEEEEEETTC-EEEEEESSCCSCCCSEETTTTEECCCC
T ss_pred EEEeCCCCEEEEEECCCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCC-EEEEEEccCCCCcccccccceeecccc
Confidence 35667898 9999999999999998 5 999999999999999999999966 59999995421000 000 00
Q ss_pred ccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEeCCCC
Q 003907 412 KYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPF 463 (787)
Q Consensus 412 ~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~~~ 463 (787)
...|. ...+.+..+ ....+..++|++||++|++++.||++++|++...
T Consensus 290 ~~~~~---~~~~~~~~~-~~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~~~~ 337 (355)
T 3vu4_A 290 QSEWS---LCNFKLSVD-KHVRGCKIAWISESSLVVVWPHTRMIETFKVVFD 337 (355)
T ss_dssp CCSSC---SEEEECCCC-TTCCCCEEEESSSSEEEEEETTTTEEEEEEEEEE
T ss_pred ccccc---eeEEEeccC-CCCCceEEEEeCCCCEEEEEeCCCeEEEEEEEcC
Confidence 00000 111222221 1122467999999999999999999999998754
No 104
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=99.79 E-value=2.1e-17 Score=171.03 Aligned_cols=250 Identities=13% Similarity=0.054 Sum_probs=165.9
Q ss_pred CceeEeeeeccCcEEEEEEecCCCCCCCCCCccccCcEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCE
Q 003907 95 SNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTA 174 (787)
Q Consensus 95 ~~~~ells~~dg~V~~v~~lP~P~~~~~~d~F~~srpLLavV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~t 174 (787)
.++...+..|.++|.++++ |+. .+|++.+. +++
T Consensus 8 ~~~~~~l~~h~~~v~~~~~-~~~-------------~~l~s~~~---------------------------------dg~ 40 (313)
T 3odt_A 8 YQLSATLKGHDQDVRDVVA-VDD-------------SKVASVSR---------------------------------DGT 40 (313)
T ss_dssp CEEEEEECCCSSCEEEEEE-EET-------------TEEEEEET---------------------------------TSE
T ss_pred HHHHHHhhCCCCCcEEEEe-cCC-------------CEEEEEEc---------------------------------CCc
Confidence 3466678899999999998 531 25654321 268
Q ss_pred EEEEECCCCeEEEEEeC-CCcEEEEEecC--CeEEEEe-CCeEEEEECCCC---ceeEEEEecCCcccCCCCcccccccc
Q 003907 175 VRFYSFQSHCYEHVLRF-RSSVCMVRCSP--RIVAVGL-ATQIYCFDALTL---ENKFSVLTYPVPQLAGQGAVGINVGY 247 (787)
Q Consensus 175 VrlWdlktg~~v~tL~f-~s~V~sV~~s~--~~LaV~~-~~~I~iwD~~T~---e~l~tl~t~p~p~~~~~~~~~~~~~~ 247 (787)
|++||+.+++.+..+.. ...|.++++++ ++|+++. ++.|++||+.+. +.+..+..|..+ .
T Consensus 41 v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~-------------i 107 (313)
T 3odt_A 41 VRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGVPLFATSGEDPLYTLIGHQGN-------------V 107 (313)
T ss_dssp EEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEEEETTCCTTSCC-CEECCCSSC-------------E
T ss_pred EEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEEEEeeecCCCCcccchhhcccC-------------E
Confidence 99999999998888865 56899999987 6777765 567999998765 344555444432 3
Q ss_pred ceeEEccceEEEecCCceecCcceeccccCCCCCcCCCcCCCCCceeEeeehhhhhhhhcccceeecccccccCCCCCCC
Q 003907 248 GPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSS 327 (787)
Q Consensus 248 ~~lAlspr~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~ 327 (787)
..+++.+++|+.++.+..+ ..|+.. ... ..+..+. +...
T Consensus 108 ~~~~~~~~~l~~~~~d~~i-----~~~d~~--------------~~~----------------~~~~~~~------~~v~ 146 (313)
T 3odt_A 108 CSLSFQDGVVISGSWDKTA-----KVWKEG--------------SLV----------------YNLQAHN------ASVW 146 (313)
T ss_dssp EEEEEETTEEEEEETTSEE-----EEEETT--------------EEE----------------EEEECCS------SCEE
T ss_pred EEEEecCCEEEEEeCCCCE-----EEEcCC--------------cEE----------------EecccCC------Ccee
Confidence 4566767888887765211 122200 000 0000000 0000
Q ss_pred CcccCCccccccccccccCCCceEEEEECCCCcEEEEecc-CCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccC
Q 003907 328 PVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKA-HTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRS 406 (787)
Q Consensus 328 ~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~v~~~~a-H~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~ 406 (787)
...+.+ .....++.+..+|.|++|| ..+.+..+.. |..+|.+++|+|+|. |++++.+| .|++||+..
T Consensus 147 ~~~~~~---~~~~~l~~~~~d~~i~i~d--~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg-~i~i~d~~~----- 214 (313)
T 3odt_A 147 DAKVVS---FSENKFLTASADKTIKLWQ--NDKVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDG-LIKLVDMHT----- 214 (313)
T ss_dssp EEEEEE---TTTTEEEEEETTSCEEEEE--TTEEEEEECSSCSSCEEEEEEEETTE-EEEEETTS-EEEEEETTT-----
T ss_pred EEEEcc---CCCCEEEEEECCCCEEEEe--cCceEEEEeccCcccEEEEEEcCCCe-EEEccCCC-eEEEEECCc-----
Confidence 000000 0111244677899999999 5567778877 999999999999998 88999866 599999854
Q ss_pred CCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEeCCCCCCccccccc
Q 003907 407 GSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQTL 472 (787)
Q Consensus 407 ~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~~~gg~~~~~~H 472 (787)
+ ..+..+. + +...|.+++|+||+ .|++++.||+|+|||+........+..|
T Consensus 215 --~----------~~~~~~~-~-~~~~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~ 265 (313)
T 3odt_A 215 --G----------DVLRTYE-G-HESFVYCIKLLPNG-DIVSCGEDRTVRIWSKENGSLKQVITLP 265 (313)
T ss_dssp --C----------CEEEEEE-C-CSSCEEEEEECTTS-CEEEEETTSEEEEECTTTCCEEEEEECS
T ss_pred --h----------hhhhhhh-c-CCceEEEEEEecCC-CEEEEecCCEEEEEECCCCceeEEEecc
Confidence 2 3566664 3 34579999999999 5899999999999999875443344333
No 105
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=99.79 E-value=6.1e-18 Score=178.79 Aligned_cols=225 Identities=12% Similarity=0.158 Sum_probs=153.5
Q ss_pred EeeeeccCcEEEEEEecCCCCCCCCCCccccCcEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEE
Q 003907 99 ELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFY 178 (787)
Q Consensus 99 ells~~dg~V~~v~~lP~P~~~~~~d~F~~srpLLavV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVrlW 178 (787)
.+...|.++|.++++.|.+. ...+++++.++ .++|++|
T Consensus 12 ~~~~~h~~~v~~i~~~p~~~---------~~~~~~~~~~~---------------------------------~~~v~vw 49 (366)
T 3k26_A 12 SLKEDHNQPLFGVQFNWHSK---------EGDPLVFATVG---------------------------------SNRVTLY 49 (366)
T ss_dssp EEECTTCSCEEEEEECTTCC---------TTSCEEEEEEE---------------------------------TTEEEEE
T ss_pred EeecCCCCceEEEEEecccC---------CCCceEEEECC---------------------------------CCEEEEE
Confidence 45667899999999998521 12234444332 1489999
Q ss_pred ECCCCeEEEEEe------CCCcEEEEEecCC------eEEEEe-CCeEEEEECCCCceeEEEEecCCcccCCCCcccccc
Q 003907 179 SFQSHCYEHVLR------FRSSVCMVRCSPR------IVAVGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINV 245 (787)
Q Consensus 179 dlktg~~v~tL~------f~s~V~sV~~s~~------~LaV~~-~~~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~ 245 (787)
|+.+++.+..++ ....|.++++++. +|+++. ++.|++||+.+++.+.++..|..+
T Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~------------ 117 (366)
T 3k26_A 50 ECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNA------------ 117 (366)
T ss_dssp EECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEEEEESCCSC------------
T ss_pred EcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEeeeecCCCCc------------
Confidence 999998887775 3367999999875 677655 568999999999988888765542
Q ss_pred ccceeEEccceEEEecCCceecCcceeccccCCCCCcCCCcCCCCCceeEeeehhhhhhhhcccceeecccccccCCCCC
Q 003907 246 GYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGS 325 (787)
Q Consensus 246 ~~~~lAlspr~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s 325 (787)
...++++| .+ +.+
T Consensus 118 -i~~~~~~~-------~~---------------------------~~~-------------------------------- 130 (366)
T 3k26_A 118 -INELKFHP-------RD---------------------------PNL-------------------------------- 130 (366)
T ss_dssp -EEEEEECS-------SC---------------------------TTE--------------------------------
T ss_pred -EEEEEECC-------CC---------------------------CCE--------------------------------
Confidence 22333322 00 000
Q ss_pred CCCcccCCccccccccccccCCCceEEEEECCCCcEEEEe---ccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCC
Q 003907 326 SSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQF---KAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPS 402 (787)
Q Consensus 326 ~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~v~~~---~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~ 402 (787)
++.+..||.|+|||+.+++.+..+ .+|..+|.+++|+|+|++|++++.||. |++||+...
T Consensus 131 ----------------l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~-i~i~d~~~~ 193 (366)
T 3k26_A 131 ----------------LLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHS-LKLWRINSK 193 (366)
T ss_dssp ----------------EEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEECTTSSEEEEEETTSC-EEEEESCSH
T ss_pred ----------------EEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEEECCCCCEEEEecCCCC-EEEEECCCC
Confidence 123456899999999999999888 789999999999999999999999776 999998642
Q ss_pred ccc---------CCCCCCccccCCc--ceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEeCCCCCC
Q 003907 403 CMR---------SGSGNHKYDWNSS--HVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGG 465 (787)
Q Consensus 403 ~~~---------~~~g~~~~~~~~s--~~~l~~l~rG~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~~~gg 465 (787)
... +..+.. ...... ....+....+ +...|.+++|+ +++|++++.|++|++||+.....
T Consensus 194 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~ 263 (366)
T 3k26_A 194 RMMNAIKESYDYNPNKTN-RPFISQKIHFPDFSTRDI-HRNYVDCVRWL--GDLILSKSCENAIVCWKPGKMED 263 (366)
T ss_dssp HHHHHHHHHHTCCGGGCS-SCCCCEEECCCSEEECSS-CSSCCCEEEEE--TTEEEEECSSSEEEEEEESSTTC
T ss_pred ccccccceeEEecCCCCc-ccccceeeccCccccccC-CcceEEEEEEc--CCEEEEEecCCEEEEEeCCCccc
Confidence 100 000000 000000 0001111122 34579999999 78999999999999999976544
No 106
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=99.79 E-value=4.3e-17 Score=199.22 Aligned_cols=247 Identities=11% Similarity=0.104 Sum_probs=166.7
Q ss_pred CCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCceeEeeeeccCcEEEEEEecCCCCCCCCCCccccCcE
Q 003907 54 DLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPF 132 (787)
Q Consensus 54 ~~~~~v~wa~Fd~l~~~~~~~~~vL~lG~~~G-~qVWdv~~~~~~~ells~~dg~V~~v~~lP~P~~~~~~d~F~~srpL 132 (787)
+|++.|..+.|+. ++++|++|..+| ++|||... .++...+ .|.++|..|++.|. + +
T Consensus 15 gh~~~V~~lafsp-------dg~~lAsgs~Dg~I~lw~~~~-~~~~~~~-~~~~~V~~l~fspg------------~--~ 71 (902)
T 2oaj_A 15 GMSSKPIAAAFDF-------TQNLLAIATVTGEVHIYGQQQ-VEVVIKL-EDRSAIKEMRFVKG------------I--Y 71 (902)
T ss_dssp ECSSCEEEEEEET-------TTTEEEEEETTSEEEEECSTT-CEEEEEC-SSCCCEEEEEEETT------------T--E
T ss_pred CCCCCcEEEEECC-------CCCEEEEEeCCCEEEEEeCCC-cEEEEEc-CCCCCEEEEEEcCC------------C--E
Confidence 5788999999984 367999999887 99999853 3332222 36789999999861 2 5
Q ss_pred EEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCCcEEEEEecC--CeEEEEe-
Q 003907 133 LLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRSSVCMVRCSP--RIVAVGL- 209 (787)
Q Consensus 133 LavV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~v~tL~f~s~V~sV~~s~--~~LaV~~- 209 (787)
|+.++. +++|+|||++++++++++.+++.|.+|++++ ++|+++.
T Consensus 72 L~S~s~---------------------------------D~~v~lWd~~~~~~~~~~~~~~~V~~v~~sp~g~~l~sgs~ 118 (902)
T 2oaj_A 72 LVVINA---------------------------------KDTVYVLSLYSQKVLTTVFVPGKITSIDTDASLDWMLIGLQ 118 (902)
T ss_dssp EEEEET---------------------------------TCEEEEEETTTCSEEEEEECSSCEEEEECCTTCSEEEEEET
T ss_pred EEEEEC---------------------------------cCeEEEEECCCCcEEEEEcCCCCEEEEEECCCCCEEEEEcC
Confidence 655332 2689999999999999999889999999988 6788876
Q ss_pred CCeEEEEECCCCceeEEEEecCCcc--cCCCCccccccccceeEEccceEEEecCCceecCcceeccccCCCCCcCCCcC
Q 003907 210 ATQIYCFDALTLENKFSVLTYPVPQ--LAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTS 287 (787)
Q Consensus 210 ~~~I~iwD~~T~e~l~tl~t~p~p~--~~~~~~~~~~~~~~~lAlspr~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~s 287 (787)
++.|++||+.++++. .+....... ....+..+ ....++++| .+
T Consensus 119 dg~V~lwd~~~~~~~-~~~i~~~~~~~~~~~~h~~---~V~sl~~sp-------~~------------------------ 163 (902)
T 2oaj_A 119 NGSMIVYDIDRDQLS-SFKLDNLQKSSFFPAARLS---PIVSIQWNP-------RD------------------------ 163 (902)
T ss_dssp TSCEEEEETTTTEEE-EEEECCHHHHHTCSSSCCC---CCCEEEEET-------TE------------------------
T ss_pred CCcEEEEECCCCccc-cceeccccccccccccCCC---CeEEEEEcc-------CC------------------------
Confidence 567999999988642 111100000 00000000 011222222 10
Q ss_pred CCCCceeEeeehhhhhhhhcccceeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECCCCcEEEEecc
Q 003907 288 PGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKA 367 (787)
Q Consensus 288 p~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~v~~~~a 367 (787)
+ ..++.+..+|.| |||+.+++.+..+..
T Consensus 164 ---~------------------------------------------------~~l~~g~~dg~v-lWd~~~~~~~~~~~~ 191 (902)
T 2oaj_A 164 ---I------------------------------------------------GTVLISYEYVTL-TYSLVENEIKQSFIY 191 (902)
T ss_dssp ---E------------------------------------------------EEEEEECSSCEE-EEETTTTEEEEEECC
T ss_pred ---C------------------------------------------------CEEEEEeCCCcE-EEECCCCceEEEEec
Confidence 0 011234568899 999999998888876
Q ss_pred C------------------CCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEE--Ee-
Q 003907 368 H------------------TSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYK--LH- 426 (787)
Q Consensus 368 H------------------~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~--l~- 426 (787)
| ..+|.+++|+|+|++|||++.||+ |+|||+.. | +.+.. +.
T Consensus 192 ~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~-i~lWd~~~-------g----------~~~~~r~l~~ 253 (902)
T 2oaj_A 192 ELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNS-LVFWDANS-------G----------HMIMARTVFE 253 (902)
T ss_dssp CBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCC-EEEEETTT-------C----------CEEEEECSSC
T ss_pred ccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCe-EEEEECCC-------C----------cEEEEEeecc
Confidence 6 578999999999999999999776 99999854 2 23221 11
Q ss_pred -ccc------------ccccEEEEEEc----cCC-CEEEEEeCC-----CeEEEEeCC
Q 003907 427 -RGI------------TSATIQDICFS----HYS-QWIAIVSSK-----GTCHVFVLS 461 (787)
Q Consensus 427 -rG~------------~~a~I~slaFS----pDg-~~LAs~S~d-----gTVhIwdl~ 461 (787)
.++ +...|.+++|+ ||+ .+|++++.| +++++|++.
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~ 311 (902)
T 2oaj_A 254 TEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLG 311 (902)
T ss_dssp SCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEE
T ss_pred cccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecC
Confidence 011 12369999995 554 567777666 389999863
No 107
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=99.78 E-value=1.7e-16 Score=187.80 Aligned_cols=244 Identities=14% Similarity=0.163 Sum_probs=179.8
Q ss_pred CCCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCceeEeeeeccCcEEEEEEecCCCCCCCCCCccccC
Q 003907 52 SEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLH 130 (787)
Q Consensus 52 ~~~~~~~v~wa~Fd~l~~~~~~~~~vL~lG~~~G-~qVWdv~~~~~~~ells~~dg~V~~v~~lP~P~~~~~~d~F~~sr 130 (787)
...|...|..+.|.. +++.|++|..+| ++|||+.. ++....+..|.++|.++.+.|+ .
T Consensus 51 ~~~~~~~v~~~~~s~-------~~~~l~~~~~dg~i~vw~~~~-~~~~~~~~~~~~~v~~~~~s~~-------------~ 109 (814)
T 3mkq_A 51 IQVTETPVRAGKFIA-------RKNWIIVGSDDFRIRVFNYNT-GEKVVDFEAHPDYIRSIAVHPT-------------K 109 (814)
T ss_dssp EECCSSCEEEEEEEG-------GGTEEEEEETTSEEEEEETTT-CCEEEEEECCSSCEEEEEECSS-------------S
T ss_pred EecCCCcEEEEEEeC-------CCCEEEEEeCCCeEEEEECCC-CcEEEEEecCCCCEEEEEEeCC-------------C
Confidence 345778899999974 356788888876 99999964 6677778889999999999874 2
Q ss_pred cEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCC-eEEEEEeC-CCcEEEEEecC---CeE
Q 003907 131 PFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSH-CYEHVLRF-RSSVCMVRCSP---RIV 205 (787)
Q Consensus 131 pLLavV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg-~~v~tL~f-~s~V~sV~~s~---~~L 205 (787)
++|++.+. +++|++||+.++ ..+..+.. ...|.++.+++ +.|
T Consensus 110 ~~l~~~~~---------------------------------dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l 156 (814)
T 3mkq_A 110 PYVLSGSD---------------------------------DLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTF 156 (814)
T ss_dssp SEEEEEET---------------------------------TSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEE
T ss_pred CEEEEEcC---------------------------------CCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEE
Confidence 36654321 258999999987 67777764 46899999987 466
Q ss_pred EEEe-CCeEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCcceeccccCCCCCcCC
Q 003907 206 AVGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSP 284 (787)
Q Consensus 206 aV~~-~~~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~~~~~lAlspr~LAyas~~~~l~~~g~~s~q~lt~~~~s~ 284 (787)
+++. ++.|++||+.+++....+..+... ....+ ++....
T Consensus 157 ~~~~~dg~v~vwd~~~~~~~~~~~~~~~~------------~v~~~-------~~~~~~--------------------- 196 (814)
T 3mkq_A 157 ASGCLDRTVKVWSLGQSTPNFTLTTGQER------------GVNYV-------DYYPLP--------------------- 196 (814)
T ss_dssp EEEETTSEEEEEETTCSSCSEEEECCCTT------------CCCEE-------EECCST---------------------
T ss_pred EEEeCCCeEEEEECCCCcceeEEecCCCC------------CEEEE-------EEEECC---------------------
Confidence 6655 568999999988877777653311 01122 222100
Q ss_pred CcCCCCCceeEeeehhhhhhhhcccceeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECCCCcEEEE
Q 003907 285 STSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQ 364 (787)
Q Consensus 285 s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~v~~ 364 (787)
+ +. .++.+..+|.|++||+.+++.+..
T Consensus 197 ----~-~~------------------------------------------------~l~~~~~dg~i~~~d~~~~~~~~~ 223 (814)
T 3mkq_A 197 ----D-KP------------------------------------------------YMITASDDLTIKIWDYQTKSCVAT 223 (814)
T ss_dssp ----T-CC------------------------------------------------EEEEECTTSEEEEEETTTTEEEEE
T ss_pred ----C-CC------------------------------------------------EEEEEeCCCEEEEEECCCCcEEEE
Confidence 0 00 012345689999999999999999
Q ss_pred eccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCC
Q 003907 365 FKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQ 444 (787)
Q Consensus 365 ~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~ 444 (787)
+.+|..+|.+++|+|+|.+|++++.||. |++||+.. + ..+..+.. +...|++++|+|||+
T Consensus 224 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~-v~vwd~~~-------~----------~~~~~~~~--~~~~v~~~~~~~~~~ 283 (814)
T 3mkq_A 224 LEGHMSNVSFAVFHPTLPIIISGSEDGT-LKIWNSST-------Y----------KVEKTLNV--GLERSWCIATHPTGR 283 (814)
T ss_dssp EECCSSCEEEEEECSSSSEEEEEETTSC-EEEEETTT-------C----------SEEEEECC--SSSSEEEEEECTTCG
T ss_pred EcCCCCCEEEEEEcCCCCEEEEEeCCCe-EEEEECCC-------C----------cEEEEeec--CCCcEEEEEEccCCC
Confidence 9999999999999999999999999776 99999854 2 35556543 234699999999997
Q ss_pred --EEEEEeCCCeEEEEeCCCC
Q 003907 445 --WIAIVSSKGTCHVFVLSPF 463 (787)
Q Consensus 445 --~LAs~S~dgTVhIwdl~~~ 463 (787)
++++++ ++.+.+|++...
T Consensus 284 ~~~~~~~~-~~~~~~~~~~~~ 303 (814)
T 3mkq_A 284 KNYIASGF-DNGFTVLSLGND 303 (814)
T ss_dssp GGEEEEEE-TTEEEEEECSCC
T ss_pred ceEEEEEe-CCCEEEEEcCCC
Confidence 455555 666889988654
No 108
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.78 E-value=9.8e-18 Score=184.25 Aligned_cols=260 Identities=13% Similarity=0.036 Sum_probs=138.1
Q ss_pred CCeEEEEEecCc-EEEEEccCCCce----eEeeeeccCcEEEEEEecCCCCCCCCCCccccCcEEEEEEcCCCCCCCCCC
Q 003907 74 FKQVLLLGYQNG-FQVLDVEDASNF----NELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQ 148 (787)
Q Consensus 74 ~~~vL~lG~~~G-~qVWdv~~~~~~----~ells~~dg~V~~v~~lP~P~~~~~~d~F~~srpLLavV~~d~~~~~~~~~ 148 (787)
.+++|+.|..++ ++|||++..... ...+.+|.++|..|++.|..... ......+||.++.
T Consensus 100 ~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~-----~~~d~~~las~s~---------- 164 (393)
T 4gq1_A 100 YSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSAD-----NRLAEQVIASVGD---------- 164 (393)
T ss_dssp EEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTT-----CSEEEEEEEEEET----------
T ss_pred CCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccc-----cCCCCCEEEEEEC----------
Confidence 356788888765 999999653221 22367899999999999842111 0011236655321
Q ss_pred CcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEE-EEeCCCcEEEEEecC---CeEEEEe-CCeEEEEECCCCce
Q 003907 149 NRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEH-VLRFRSSVCMVRCSP---RIVAVGL-ATQIYCFDALTLEN 223 (787)
Q Consensus 149 ~~~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~v~-tL~f~s~V~sV~~s~---~~LaV~~-~~~I~iwD~~T~e~ 223 (787)
+++|+|||++++..+. .+.+++.|.+|+|+| ++|+++. ++.|++||+.+++.
T Consensus 165 -----------------------D~tv~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~ 221 (393)
T 4gq1_A 165 -----------------------DCTLIIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLS 221 (393)
T ss_dssp -----------------------TSEEEEEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC-
T ss_pred -----------------------CCeEEEEECCCCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcc
Confidence 3699999998876555 446788999999987 3677765 56799999999887
Q ss_pred eEEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCcceeccccCCCCCcCCCcCCCCCceeEeeehhhhh
Q 003907 224 KFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSK 303 (787)
Q Consensus 224 l~tl~t~p~p~~~~~~~~~~~~~~~~lAlspr~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~sp~~g~lva~~a~d~sk 303 (787)
..++..++.... ...+...+.-+..... ..++. ..
T Consensus 222 ~~~~~~~~~~~~-----------~~~~s~~~~~~~~~~~-----~~~~~-----------------~~------------ 256 (393)
T 4gq1_A 222 AEENSQTELVKN-----------PWLLTLNTLPLVNTCH-----SSGIA-----------------SS------------ 256 (393)
T ss_dssp ---------CSC-----------CCSEEEESGGGC-----------CCS-----------------SS------------
T ss_pred cccccccCCccc-----------ceEEecccccceeeee-----ccccc-----------------cc------------
Confidence 665543322100 0011111100000000 00000 00
Q ss_pred hhhcccceeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECC----
Q 003907 304 QFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDP---- 379 (787)
Q Consensus 304 ~la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~v~~~~aH~~pIsaLaFSp---- 379 (787)
.....+. ...+..++.+..|++++|||+..++....+..|...+..+.|.|
T Consensus 257 ----------------------v~~v~~~---~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 311 (393)
T 4gq1_A 257 ----------------------LANVRWI---GSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQG 311 (393)
T ss_dssp ----------------------CSEEEEE---TTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEE
T ss_pred ----------------------ceeeeee---cCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEcccccc
Confidence 0000000 01111234567899999999998887777777776666555544
Q ss_pred ----------------CCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCC
Q 003907 380 ----------------SGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYS 443 (787)
Q Consensus 380 ----------------dG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg 443 (787)
++.++++++.|| .|+|||+.. + ..+..+.. +...|.+|+|||||
T Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~sgs~Dg-~V~lwd~~~-------~----------~~~~~~~~--~~~~V~svafspdG 371 (393)
T 4gq1_A 312 ISLFPSLLGACPHPRYMDYFATAHSQHG-LIQLINTYE-------K----------DSNSIPIQ--LGMPIVDFCWHQDG 371 (393)
T ss_dssp ECSSCCSSCCEECSSCTTEEEEEETTTT-EEEEEETTC-------T----------TCCEEEEE--CSSCEEEEEECTTS
T ss_pred ccccCcceeEEEccCCCCEEEEEECCCC-EEEEEECCC-------C----------cEEEEecC--CCCcEEEEEEcCCC
Confidence 344666777755 599999864 2 12233332 23479999999999
Q ss_pred CEEEEEeCCCeEEEEeCCC
Q 003907 444 QWIAIVSSKGTCHVFVLSP 462 (787)
Q Consensus 444 ~~LAs~S~dgTVhIwdl~~ 462 (787)
++||+++++| +.||.+..
T Consensus 372 ~~LA~as~~G-v~lvrL~g 389 (393)
T 4gq1_A 372 SHLAIATEGS-VLLTRLMG 389 (393)
T ss_dssp SEEEEEESSE-EEEEEEGG
T ss_pred CEEEEEeCCC-eEEEEEeC
Confidence 9999999876 66666643
No 109
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.77 E-value=4.2e-18 Score=196.33 Aligned_cols=114 Identities=11% Similarity=-0.032 Sum_probs=88.2
Q ss_pred ccccCCCceEEEEECCCC-cEEEEeccCCCCeEEE--EECCCC-CEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCC
Q 003907 342 GADMDNAGIVVVKDFVTR-AIISQFKAHTSPISAL--CFDPSG-TLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNS 417 (787)
Q Consensus 342 ~~s~~~dG~V~IwDl~s~-~~v~~~~aH~~pIsaL--aFSpdG-~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~ 417 (787)
++++..||+|+|||+.++ .+...+.+|+.+|.+| +|+|+| ++|||||.|+ .|+|||++. +
T Consensus 280 lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~-tvklWD~~~-------~-------- 343 (524)
T 2j04_B 280 VVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDG-YFYIFNPKD-------I-------- 343 (524)
T ss_dssp EEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTS-EEEEECGGG-------H--------
T ss_pred EEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCC-eEEEEECCC-------C--------
Confidence 345678999999999876 4456789999999999 689998 9999999966 599999853 1
Q ss_pred cceEEEEEeccccc-ccEEEEEEccCCCEEEEEeCCCeEEEEeCCCCCCccccccccC
Q 003907 418 SHVHLYKLHRGITS-ATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQTLSS 474 (787)
Q Consensus 418 s~~~l~~l~rG~~~-a~I~slaFSpDg~~LAs~S~dgTVhIwdl~~~gg~~~~~~H~~ 474 (787)
.++..+. ++.. ..|.+++|+||++.|++++.|++|+|||+........+.+|..
T Consensus 344 --~~~~~~~-~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~ 398 (524)
T 2j04_B 344 --ATTKTTV-SRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSRET 398 (524)
T ss_dssp --HHHCEEE-EECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEECSS
T ss_pred --Ccccccc-cccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccceeeecCCC
Confidence 1222222 2221 2478899999999999999999999999987665566777753
No 110
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=99.77 E-value=2e-16 Score=166.00 Aligned_cols=213 Identities=12% Similarity=0.092 Sum_probs=148.7
Q ss_pred ceeEeeeeccCcEEEEEEecCCCCCCCCCCccccCcEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEE
Q 003907 96 NFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAV 175 (787)
Q Consensus 96 ~~~ells~~dg~V~~v~~lP~P~~~~~~d~F~~srpLLavV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tV 175 (787)
.++.+|.+|.++|.+|++.|+- ..+||..+. +++|
T Consensus 29 ~l~~tL~GH~~~V~~v~~sp~~------------~~~l~S~s~---------------------------------D~~i 63 (340)
T 4aow_A 29 TLRGTLKGHNGWVTQIATTPQF------------PDMILSASR---------------------------------DKTI 63 (340)
T ss_dssp EEEEEECCCSSCEEEEEECTTC------------TTEEEEEET---------------------------------TSCE
T ss_pred EEEEEECCccCCEEEEEEeCCC------------CCEEEEEcC---------------------------------CCeE
Confidence 4566788999999999999741 126654321 3689
Q ss_pred EEEECCCCe-----EEEEEeCC-CcEEEEEecC--CeEEEEe-CCeEEEEECCCCceeEEEEecCCcccCCCCccccccc
Q 003907 176 RFYSFQSHC-----YEHVLRFR-SSVCMVRCSP--RIVAVGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVG 246 (787)
Q Consensus 176 rlWdlktg~-----~v~tL~f~-s~V~sV~~s~--~~LaV~~-~~~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~~ 246 (787)
+|||+.+++ ..++++.+ ..|.++.+++ ++|+++. ++.|++|+............+...
T Consensus 64 ~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~------------- 130 (340)
T 4aow_A 64 IMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKD------------- 130 (340)
T ss_dssp EEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSC-------------
T ss_pred EEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEcccccceEEeecccceeeeecCCCCc-------------
Confidence 999987653 46667654 5899999987 5777655 568999998887655444332211
Q ss_pred cceeEEccceEEEecCCceecCcceeccccCCCCCcCCCcCCCCCceeEeeehhhhhhhhcccceeecccccccCCCCCC
Q 003907 247 YGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSS 326 (787)
Q Consensus 247 ~~~lAlspr~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~ 326 (787)
...+. +.... .
T Consensus 131 ~~~~~-------~~~~~---------------------------~----------------------------------- 141 (340)
T 4aow_A 131 VLSVA-------FSSDN---------------------------R----------------------------------- 141 (340)
T ss_dssp EEEEE-------ECTTS---------------------------S-----------------------------------
T ss_pred eeEEE-------EeecC---------------------------c-----------------------------------
Confidence 00011 11100 0
Q ss_pred CCcccCCccccccccccccCCCceEEEEECCCCcE-EEEeccCCCCeEEEEECCCC--CEEEEEEcCCCEEEEEeCCCCc
Q 003907 327 SPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAI-ISQFKAHTSPISALCFDPSG--TLLVTASVYGNNINIFRIMPSC 403 (787)
Q Consensus 327 ~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~-v~~~~aH~~pIsaLaFSpdG--~lLATaS~dG~~IrVWdi~~~~ 403 (787)
.++++..||.+++||+..... ...+.+|...|.+++|++++ .++++++.|+. |++||+..
T Consensus 142 --------------~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~-i~i~d~~~-- 204 (340)
T 4aow_A 142 --------------QIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKL-VKVWNLAN-- 204 (340)
T ss_dssp --------------CEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSC-EEEEETTT--
T ss_pred --------------cceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEEEEEcCCCE-EEEEECCC--
Confidence 112345689999999987654 44567899999999998865 57899999665 99999854
Q ss_pred ccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEeCCCCCCcccc
Q 003907 404 MRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGF 469 (787)
Q Consensus 404 ~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~~~gg~~~~ 469 (787)
+ ..+..+. + +...|.+|+|+||+++|++++.|++|+|||+........+
T Consensus 205 -----~----------~~~~~~~-~-h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~ 253 (340)
T 4aow_A 205 -----C----------KLKTNHI-G-HTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTL 253 (340)
T ss_dssp -----T----------EEEEEEC-C-CSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEE
T ss_pred -----C----------ceeeEec-C-CCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeee
Confidence 2 3445553 4 3457999999999999999999999999999865433333
No 111
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.76 E-value=2.9e-16 Score=163.04 Aligned_cols=102 Identities=22% Similarity=0.229 Sum_probs=78.0
Q ss_pred ccCCCceEEEEECCCCcEEEEec-------------cCCCCeEEEEECCC---CCEEEEEEcCCCEEEEEeCCCCcccCC
Q 003907 344 DMDNAGIVVVKDFVTRAIISQFK-------------AHTSPISALCFDPS---GTLLVTASVYGNNINIFRIMPSCMRSG 407 (787)
Q Consensus 344 s~~~dG~V~IwDl~s~~~v~~~~-------------aH~~pIsaLaFSpd---G~lLATaS~dG~~IrVWdi~~~~~~~~ 407 (787)
.+..||.|+|||+.+++.+..+. .|...|.+++|+|+ +.+|++++.++. +.+|+...
T Consensus 129 ~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~-~~~~~~~~------ 201 (351)
T 3f3f_A 129 CLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQA-IIYQRGKD------ 201 (351)
T ss_dssp EEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEE-EEEEECTT------
T ss_pred EecCCCcEEEecCCChHHhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCc-EEEEccCC------
Confidence 45678999999998876544433 68899999999997 999999999664 66666532
Q ss_pred CCCCccccCCcceEEEEEecccccccEEEEEEccCC----CEEEEEeCCCeEEEEeCCCC
Q 003907 408 SGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYS----QWIAIVSSKGTCHVFVLSPF 463 (787)
Q Consensus 408 ~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg----~~LAs~S~dgTVhIwdl~~~ 463 (787)
+ ....+..+. + +...|.+++|+||+ ++|++++.||+|+|||+...
T Consensus 202 -~--------~~~~~~~~~-~-h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~ 250 (351)
T 3f3f_A 202 -G--------KLHVAAKLP-G-HKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEK 250 (351)
T ss_dssp -S--------CEEEEEECC-C-CCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEEC
T ss_pred -C--------ceeeeeecC-C-CCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCC
Confidence 1 012233332 3 34579999999998 89999999999999999864
No 112
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=99.75 E-value=1.1e-16 Score=175.12 Aligned_cols=103 Identities=17% Similarity=0.214 Sum_probs=78.4
Q ss_pred cccCCCceEEEEECCC-CcEEE-------EeccCCCCeEEEEECCCC-CEEEEEEcCCCEEEEEeCCCCcccCCCCCCcc
Q 003907 343 ADMDNAGIVVVKDFVT-RAIIS-------QFKAHTSPISALCFDPSG-TLLVTASVYGNNINIFRIMPSCMRSGSGNHKY 413 (787)
Q Consensus 343 ~s~~~dG~V~IwDl~s-~~~v~-------~~~aH~~pIsaLaFSpdG-~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~ 413 (787)
+++ .||.|+|||+.+ ++.+. .+.+|...|.+++|+|+| ++||+++.||+ |+|||+......
T Consensus 193 ~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~-i~iwd~~~~~~~-------- 262 (447)
T 3dw8_B 193 LSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGT-IRLCDMRASALC-------- 262 (447)
T ss_dssp EEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSC-EEEEETTTCSSS--------
T ss_pred EEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCe-EEEEECcCCccc--------
Confidence 455 699999999984 44444 367899999999999999 99999999776 999998642100
Q ss_pred ccCCcceEEEEEeccccc-----------ccEEEEEEccCCCEEEEEeCCCeEEEEeCCC
Q 003907 414 DWNSSHVHLYKLHRGITS-----------ATIQDICFSHYSQWIAIVSSKGTCHVFVLSP 462 (787)
Q Consensus 414 ~~~~s~~~l~~l~rG~~~-----------a~I~slaFSpDg~~LAs~S~dgTVhIwdl~~ 462 (787)
..++..+. ++.. ..|.+++|+|||++|++++. ++|+|||+..
T Consensus 263 -----~~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~ 315 (447)
T 3dw8_B 263 -----DRHSKLFE-EPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNM 315 (447)
T ss_dssp -----CTTCEEEC-CC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTC
T ss_pred -----cceeeEec-cCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCC
Confidence 00122332 2111 26999999999999999999 9999999986
No 113
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.74 E-value=2.8e-16 Score=174.27 Aligned_cols=103 Identities=18% Similarity=0.284 Sum_probs=83.4
Q ss_pred ccCCCceEEEEECCCC---cEEEEeccCCCCeEEEEECCCCC-EEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcc
Q 003907 344 DMDNAGIVVVKDFVTR---AIISQFKAHTSPISALCFDPSGT-LLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSH 419 (787)
Q Consensus 344 s~~~dG~V~IwDl~s~---~~v~~~~aH~~pIsaLaFSpdG~-lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~ 419 (787)
.+..+|.|+|||+.++ +.+..+.+|..+|++|+|+|+|. +||+++.|| .|+|||+... +
T Consensus 249 s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg-~v~vwd~~~~------~---------- 311 (430)
T 2xyi_A 249 SVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADK-TVALWDLRNL------K---------- 311 (430)
T ss_dssp EEETTSEEEEEETTCSCSSSCSEEEECCSSCEEEEEECSSCTTEEEEEETTS-EEEEEETTCT------T----------
T ss_pred EEeCCCeEEEEECCCCCCCcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCC-eEEEEeCCCC------C----------
Confidence 3456899999999987 57788889999999999999997 799999966 4999999541 1
Q ss_pred eEEEEEecccccccEEEEEEccCCC-EEEEEeCCCeEEEEeCCCCCC
Q 003907 420 VHLYKLHRGITSATIQDICFSHYSQ-WIAIVSSKGTCHVFVLSPFGG 465 (787)
Q Consensus 420 ~~l~~l~rG~~~a~I~slaFSpDg~-~LAs~S~dgTVhIwdl~~~gg 465 (787)
..+..+.. +...|.+|+|+|+++ +|++++.|++|+|||+...+.
T Consensus 312 ~~~~~~~~--h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~ 356 (430)
T 2xyi_A 312 LKLHSFES--HKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGE 356 (430)
T ss_dssp SCSEEEEC--CSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTC
T ss_pred CCeEEeec--CCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCcc
Confidence 23444442 345799999999995 799999999999999987543
No 114
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=99.73 E-value=4.5e-16 Score=170.32 Aligned_cols=216 Identities=14% Similarity=0.119 Sum_probs=154.4
Q ss_pred CCEEEEEECCCCeEEEEEeC--CCcEEEEEecC--CeEEEEe-CCeEEEEECCCCceeEEEEecCCcccCCCCccccccc
Q 003907 172 PTAVRFYSFQSHCYEHVLRF--RSSVCMVRCSP--RIVAVGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVG 246 (787)
Q Consensus 172 p~tVrlWdlktg~~v~tL~f--~s~V~sV~~s~--~~LaV~~-~~~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~~ 246 (787)
+++|++||+.+++....+.. ...|.+|++++ ++|+++. ++.|++||+.+++.+.++..|..+
T Consensus 112 d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~------------- 178 (401)
T 4aez_A 112 ERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQAR------------- 178 (401)
T ss_dssp TTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSC-------------
T ss_pred CCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeEEEEecCCCCc-------------
Confidence 46899999999999988876 56899999987 6788776 568999999999988888766543
Q ss_pred cceeEEccceEEEecCCceecCcceeccccCCCCCcCCCcCCCCCceeEeeehhhhhhhhcccceeecccccccCCCCCC
Q 003907 247 YGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSS 326 (787)
Q Consensus 247 ~~~lAlspr~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~ 326 (787)
...+++.+++|+.++.+..+ ..|+.... +..+ +.+..+. +..
T Consensus 179 v~~~~~~~~~l~~~~~dg~i-----~i~d~~~~-----------~~~~----------------~~~~~~~------~~v 220 (401)
T 4aez_A 179 VGCLSWNRHVLSSGSRSGAI-----HHHDVRIA-----------NHQI----------------GTLQGHS------SEV 220 (401)
T ss_dssp EEEEEEETTEEEEEETTSEE-----EEEETTSS-----------SCEE----------------EEEECCS------SCE
T ss_pred eEEEEECCCEEEEEcCCCCE-----EEEecccC-----------ccee----------------eEEcCCC------CCe
Confidence 34577778888888765321 12332110 0000 1111110 111
Q ss_pred CCcccCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCC-CEEEEEE--cCCCEEEEEeCCCCc
Q 003907 327 SPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSG-TLLVTAS--VYGNNINIFRIMPSC 403 (787)
Q Consensus 327 ~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~v~~~~aH~~pIsaLaFSpdG-~lLATaS--~dG~~IrVWdi~~~~ 403 (787)
..+.++++. ..++.+..||.|+|||+.+++.+..+..|..+|.+++|+|+| .+|++++ .|| .|++||+..
T Consensus 221 ~~~~~~~~~----~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~-~i~i~d~~~-- 293 (401)
T 4aez_A 221 CGLAWRSDG----LQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDK-QIHFWNAAT-- 293 (401)
T ss_dssp EEEEECTTS----SEEEEEETTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTC-EEEEEETTT--
T ss_pred eEEEEcCCC----CEEEEEeCCCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCC-EEEEEECCC--
Confidence 122233322 234567889999999999999999999999999999999976 5677765 545 599999854
Q ss_pred ccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEe--CCCeEEEEeCCCC
Q 003907 404 MRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVS--SKGTCHVFVLSPF 463 (787)
Q Consensus 404 ~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~LAs~S--~dgTVhIwdl~~~ 463 (787)
+ ..+..+. +...|.+++|+||+++|++++ .||+|+||++...
T Consensus 294 -----~----------~~~~~~~---~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~ 337 (401)
T 4aez_A 294 -----G----------ARVNTVD---AGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSS 337 (401)
T ss_dssp -----C----------CEEEEEE---CSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETT
T ss_pred -----C----------CEEEEEe---CCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCc
Confidence 2 3555554 234699999999999999955 8999999999763
No 115
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=99.73 E-value=8.1e-16 Score=169.58 Aligned_cols=226 Identities=15% Similarity=0.146 Sum_probs=155.1
Q ss_pred CEEEEEECCCCeEEEEEeCC---CcEEEEEecC--CeEEEEe-CCeEEEEECCCCceeEEEEecCCcccCCCCccccccc
Q 003907 173 TAVRFYSFQSHCYEHVLRFR---SSVCMVRCSP--RIVAVGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVG 246 (787)
Q Consensus 173 ~tVrlWdlktg~~v~tL~f~---s~V~sV~~s~--~~LaV~~-~~~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~~ 246 (787)
++|+|||+.+|++++.++++ ..|.+|+|++ ++||+|. ++.|+|||+.+++.+.++..|...
T Consensus 125 ~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~~~h~~~------------- 191 (420)
T 4gga_A 125 NSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSAR------------- 191 (420)
T ss_dssp TEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSC-------------
T ss_pred CEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEEEeCCCCc-------------
Confidence 68999999999999988754 3799999998 6888876 567999999999999888876653
Q ss_pred cceeEEccceEEEecCCceecCcceeccccCCCCCcCCCcCCCCCceeEeeehhhhhhhhcccceeecccccccCCCCCC
Q 003907 247 YGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSS 326 (787)
Q Consensus 247 ~~~lAlspr~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~ 326 (787)
...++..++.|+.++.+..+ ..|+.... ...+ .++..+... .
T Consensus 192 v~~~s~~~~~l~sgs~d~~i-----~~~d~~~~-----------~~~~----------------~~~~~h~~~------~ 233 (420)
T 4gga_A 192 VGSLSWNSYILSSGSRSGHI-----HHHDVRVA-----------EHHV----------------ATLSGHSQE------V 233 (420)
T ss_dssp EEEEEEETTEEEEEETTSEE-----EEEETTSS-----------SCEE----------------EEEECCSSC------E
T ss_pred eEEEeeCCCEEEEEeCCCce-----eEeeeccc-----------ceee----------------EEecccccc------e
Confidence 34566677888888765321 11221110 0000 111111100 0
Q ss_pred CCcccCCccccccccccccCCCceEEEEECCCCc----EEEEeccCCCCeEEEEECCCC-CEEEEEE-cCCCEEEEEeCC
Q 003907 327 SPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRA----IISQFKAHTSPISALCFDPSG-TLLVTAS-VYGNNINIFRIM 400 (787)
Q Consensus 327 ~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~----~v~~~~aH~~pIsaLaFSpdG-~lLATaS-~dG~~IrVWdi~ 400 (787)
....+.+. +..++.+..||.|+|||..+++ .+..+..|..+|.+++|+|++ .+|++++ ..+..|+|||+.
T Consensus 234 ~~~~~~~~----g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~ 309 (420)
T 4gga_A 234 CGLRWAPD----GRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVC 309 (420)
T ss_dssp EEEEECTT----SSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETT
T ss_pred eeeeecCC----CCeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCC
Confidence 01111111 1234567789999999998764 456778899999999999964 5666654 234569999996
Q ss_pred CCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEe--CCCeEEEEeCCCCCCcccccccc
Q 003907 401 PSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVS--SKGTCHVFVLSPFGGDSGFQTLS 473 (787)
Q Consensus 401 ~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~LAs~S--~dgTVhIwdl~~~gg~~~~~~H~ 473 (787)
. + ..+..+.. ...|.++.|+|+++.|++++ .|++|+|||+........+.+|.
T Consensus 310 t-------~----------~~~~~~~~---~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~ 364 (420)
T 4gga_A 310 S-------G----------ACLSAVDA---HSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHT 364 (420)
T ss_dssp T-------T----------EEEEEEEC---SSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCS
T ss_pred c-------c----------ccceeecc---ccceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCCC
Confidence 4 3 35555542 24689999999999998876 78999999998766556677775
No 116
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.72 E-value=4.1e-16 Score=173.51 Aligned_cols=100 Identities=13% Similarity=0.080 Sum_probs=82.0
Q ss_pred CCCceEEEEECCCCcEEE----EeccCCCCeEEEEECCC---CCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCc
Q 003907 346 DNAGIVVVKDFVTRAIIS----QFKAHTSPISALCFDPS---GTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSS 418 (787)
Q Consensus 346 ~~dG~V~IwDl~s~~~v~----~~~aH~~pIsaLaFSpd---G~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s 418 (787)
..+|.|.+||+.+++... .+.+|..+|.+|+|+|+ |++|++++.|++ |+|||+.. +
T Consensus 168 ~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~-i~vwd~~~-------~--------- 230 (450)
T 2vdu_B 168 DKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEH-IKISHYPQ-------C--------- 230 (450)
T ss_dssp ETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSC-EEEEEESC-------T---------
T ss_pred eCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCc-EEEEECCC-------C---------
Confidence 357889999988776544 78899999999999999 999999999775 99999854 2
Q ss_pred ceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEeCCCCCC
Q 003907 419 HVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGG 465 (787)
Q Consensus 419 ~~~l~~l~rG~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~~~gg 465 (787)
..+..+..|+ ...|.+++|+ |+++|++++.|++|+|||+.....
T Consensus 231 -~~~~~~~~~h-~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~ 274 (450)
T 2vdu_B 231 -FIVDKWLFGH-KHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKN 274 (450)
T ss_dssp -TCEEEECCCC-SSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCE
T ss_pred -ceeeeeecCC-CCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcE
Confidence 2444544453 4579999999 999999999999999999986543
No 117
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.70 E-value=8.6e-15 Score=162.60 Aligned_cols=238 Identities=15% Similarity=0.066 Sum_probs=160.8
Q ss_pred CeEEEEEec------CcEEEEEccCCCceeEeeeeccCcEEEEEEecCCCCCCCCCCccccCcEEEEEEcCCCCCCCCCC
Q 003907 75 KQVLLLGYQ------NGFQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQ 148 (787)
Q Consensus 75 ~~vL~lG~~------~G~qVWdv~~~~~~~ells~~dg~V~~v~~lP~P~~~~~~d~F~~srpLLavV~~d~~~~~~~~~ 148 (787)
.+++.++.. ..+++||++ .+ ....+..|.+.|..+++.|+. + .||.++.++
T Consensus 144 ~~l~~~s~~~~~~~~~~i~i~d~~-g~-~~~~l~~~~~~v~~~~~Spdg-----------~--~la~~s~~~-------- 200 (415)
T 2hqs_A 144 TRIAYVVQTNGGQFPYELRVSDYD-GY-NQFVVHRSPQPLMSPAWSPDG-----------S--KLAYVTFES-------- 200 (415)
T ss_dssp CEEEEEEECSSSSCCEEEEEEETT-SC-SCEEEEEESSCEEEEEECTTS-----------S--EEEEEECTT--------
T ss_pred CEEEEEEecCCCCccceEEEEcCC-CC-CCEEEeCCCCcceeeEEcCCC-----------C--EEEEEEecC--------
Confidence 355555554 358999995 33 345666788899999999852 2 666644321
Q ss_pred CcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCCcEEEEEecC--CeEEE-EeC---CeEEEEECCCCc
Q 003907 149 NRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRSSVCMVRCSP--RIVAV-GLA---TQIYCFDALTLE 222 (787)
Q Consensus 149 ~~~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~v~tL~f~s~V~sV~~s~--~~LaV-~~~---~~I~iwD~~T~e 222 (787)
...+|++||+++++......+...+.+++|+| +.|++ +.. ..|++||+.+++
T Consensus 201 ----------------------~~~~i~~~d~~tg~~~~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~ 258 (415)
T 2hqs_A 201 ----------------------GRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQ 258 (415)
T ss_dssp ----------------------SSCEEEEEETTTCCEEEEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCC
T ss_pred ----------------------CCcEEEEEECCCCcEEEeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCC
Confidence 02589999999999876556778999999998 56774 432 359999999887
Q ss_pred eeEEEEecCCcccCCCCccccccccceeEEcc--ceEEEecCCceecCcceeccccCCCCCcCCCcCCCCCceeEeeehh
Q 003907 223 NKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP--RWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAME 300 (787)
Q Consensus 223 ~l~tl~t~p~p~~~~~~~~~~~~~~~~lAlsp--r~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~sp~~g~lva~~a~d 300 (787)
. ..+..+... ...++++| ++|++++..
T Consensus 259 ~-~~l~~~~~~-------------~~~~~~spdg~~l~~~s~~------------------------------------- 287 (415)
T 2hqs_A 259 I-RQVTDGRSN-------------NTEPTWFPDSQNLAFTSDQ------------------------------------- 287 (415)
T ss_dssp E-EECCCCSSC-------------EEEEEECTTSSEEEEEECT-------------------------------------
T ss_pred E-EeCcCCCCc-------------ccceEECCCCCEEEEEECC-------------------------------------
Confidence 4 344333221 23455555 455544311
Q ss_pred hhhhhhcccceeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCC
Q 003907 301 HSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPS 380 (787)
Q Consensus 301 ~sk~la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~v~~~~aH~~pIsaLaFSpd 380 (787)
.....|.+||+.+++. ..+..|...+.+++|+||
T Consensus 288 ---------------------------------------------~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spd 321 (415)
T 2hqs_A 288 ---------------------------------------------AGRPQVYKVNINGGAP-QRITWEGSQNQDADVSSD 321 (415)
T ss_dssp ---------------------------------------------TSSCEEEEEETTSSCC-EECCCSSSEEEEEEECTT
T ss_pred ---------------------------------------------CCCcEEEEEECCCCCE-EEEecCCCcccCeEECCC
Confidence 0112577889887763 456677788999999999
Q ss_pred CCEEEEEEcCC--CEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCC---eE
Q 003907 381 GTLLVTASVYG--NNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKG---TC 455 (787)
Q Consensus 381 G~lLATaS~dG--~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~LAs~S~dg---TV 455 (787)
|++||+++.++ ..|.+||+.. + .+..+..+ ..+.+++|+|||++|+.++.++ ++
T Consensus 322 G~~l~~~~~~~g~~~i~~~d~~~-------~-----------~~~~l~~~---~~~~~~~~spdg~~l~~~s~~~~~~~l 380 (415)
T 2hqs_A 322 GKFMVMVSSNGGQQHIAKQDLAT-------G-----------GVQVLSST---FLDETPSLAPNGTMVIYSSSQGMGSVL 380 (415)
T ss_dssp SSEEEEEEECSSCEEEEEEETTT-------C-----------CEEECCCS---SSCEEEEECTTSSEEEEEEEETTEEEE
T ss_pred CCEEEEEECcCCceEEEEEECCC-------C-----------CEEEecCC---CCcCCeEEcCCCCEEEEEEcCCCccEE
Confidence 99999988752 4699999853 2 22334322 2689999999999999998877 79
Q ss_pred EEEeCCCCCCccccccccCCC
Q 003907 456 HVFVLSPFGGDSGFQTLSSQG 476 (787)
Q Consensus 456 hIwdl~~~gg~~~~~~H~~~~ 476 (787)
.+||+. .+....+..|...+
T Consensus 381 ~~~d~~-g~~~~~l~~~~~~v 400 (415)
T 2hqs_A 381 NLVSTD-GRFKARLPATDGQV 400 (415)
T ss_dssp EEEETT-SCCEEECCCSSSEE
T ss_pred EEEECC-CCcEEEeeCCCCCC
Confidence 999986 23344555554333
No 118
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.70 E-value=1e-15 Score=161.42 Aligned_cols=259 Identities=13% Similarity=0.031 Sum_probs=158.8
Q ss_pred CceeEeeeeccCcEEEEEEecCCCCCCCCCCccccCcEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCE
Q 003907 95 SNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTA 174 (787)
Q Consensus 95 ~~~~ells~~dg~V~~v~~lP~P~~~~~~d~F~~srpLLavV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~t 174 (787)
.+..+++..|.+.|.+|++.|+- ....+|++.+. +++
T Consensus 29 ~~~~~~~~~h~~~v~~~~~~~~~----------~~g~~l~~~~~---------------------------------dg~ 65 (368)
T 3mmy_A 29 MKDIEVTSSPDDSIGCLSFSPPT----------LPGNFLIAGSW---------------------------------AND 65 (368)
T ss_dssp TCCEECSSCCSSCEEEEEECCTT----------SSSEEEEEEET---------------------------------TSE
T ss_pred cceeEeccCCCCceEEEEEcCCC----------CCceEEEEECC---------------------------------CCc
Confidence 33456788899999999999741 00136654221 258
Q ss_pred EEEEECCC-CeEE-EEEe-CCCcEEEEEecC--CeEEEEe-CCeEEEEECCCCceeEEEEecCCcccCCCCccccccccc
Q 003907 175 VRFYSFQS-HCYE-HVLR-FRSSVCMVRCSP--RIVAVGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYG 248 (787)
Q Consensus 175 VrlWdlkt-g~~v-~tL~-f~s~V~sV~~s~--~~LaV~~-~~~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~~~~ 248 (787)
|+|||+.+ ++.+ ..+. +...|.++++++ ++|+++. ++.|++||+.+++.+. +..|..+ ..
T Consensus 66 i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~-~~~~~~~-------------v~ 131 (368)
T 3mmy_A 66 VRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQ-IAQHDAP-------------VK 131 (368)
T ss_dssp EEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEE-EEECSSC-------------EE
T ss_pred EEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcCCCcEEEEEcCCCCcee-eccccCc-------------eE
Confidence 99999997 5555 6665 456999999987 5777765 5689999999988655 3444442 34
Q ss_pred eeEE--cc--ceEEEecCCceecCcceeccccCCCCCcCCCcCCCCCceeEeeehhhhhhhhcccceeecccccccCCCC
Q 003907 249 PMAV--GP--RWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDG 324 (787)
Q Consensus 249 ~lAl--sp--r~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~ 324 (787)
.+++ +| ++|++++.+.. ...|+..+... +. .+... .
T Consensus 132 ~~~~~~~~~~~~l~~~~~dg~-----i~vwd~~~~~~------------~~----------------~~~~~-------~ 171 (368)
T 3mmy_A 132 TIHWIKAPNYSCVMTGSWDKT-----LKFWDTRSSNP------------MM----------------VLQLP-------E 171 (368)
T ss_dssp EEEEEECSSCEEEEEEETTSE-----EEEECSSCSSC------------SE----------------EEECS-------S
T ss_pred EEEEEeCCCCCEEEEccCCCc-----EEEEECCCCcE------------EE----------------EEecC-------C
Confidence 5777 55 56877765421 11233222110 00 00000 0
Q ss_pred CCCCcccCCccccccccccccCCCceEEEEECCCCcEEEEe--ccCCCCeEEEEECCCCCE----EEEEEcCCCEEEEEe
Q 003907 325 SSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQF--KAHTSPISALCFDPSGTL----LVTASVYGNNINIFR 398 (787)
Q Consensus 325 s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~v~~~--~aH~~pIsaLaFSpdG~l----LATaS~dG~~IrVWd 398 (787)
......+.. .....+..++.+.+||+......... ..+...+.++++.+++.. |++++.+| .|+|||
T Consensus 172 ~~~~~~~~~------~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg-~i~i~~ 244 (368)
T 3mmy_A 172 RCYCADVIY------PMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEG-RVAIHY 244 (368)
T ss_dssp CEEEEEEET------TEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTS-EEEEEE
T ss_pred CceEEEecC------CeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCC-cEEEEe
Confidence 000000000 01224556899999999876543322 234556677777665554 99999966 599999
Q ss_pred CCCCcccCCCCCCccccCCcceEEEEEeccccc-----------ccEEEEEEccCCCEEEEEeCCCeEEEEeCCCCCCcc
Q 003907 399 IMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITS-----------ATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDS 467 (787)
Q Consensus 399 i~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~-----------a~I~slaFSpDg~~LAs~S~dgTVhIwdl~~~gg~~ 467 (787)
+.... ....+..+. ++.. ..|.+++|+||+++|++++.||+|+|||+.......
T Consensus 245 ~~~~~--------------~~~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~ 309 (368)
T 3mmy_A 245 INPPN--------------PAKDNFTFK-CHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLK 309 (368)
T ss_dssp SSCSC--------------HHHHSEEEE-CSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEE
T ss_pred cCCCC--------------ccccceeee-eeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEE
Confidence 96420 001222332 1111 159999999999999999999999999998654444
Q ss_pred ccccc
Q 003907 468 GFQTL 472 (787)
Q Consensus 468 ~~~~H 472 (787)
.+..|
T Consensus 310 ~~~~~ 314 (368)
T 3mmy_A 310 TSEQL 314 (368)
T ss_dssp ECCCC
T ss_pred EecCC
Confidence 44444
No 119
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.70 E-value=1e-15 Score=167.18 Aligned_cols=55 Identities=11% Similarity=0.189 Sum_probs=47.3
Q ss_pred ccCCCceEEEEECCCCcEEEEeccCCCCeE-EEEECCCCCEEEEEEcCCCEEEEEeC
Q 003907 344 DMDNAGIVVVKDFVTRAIISQFKAHTSPIS-ALCFDPSGTLLVTASVYGNNINIFRI 399 (787)
Q Consensus 344 s~~~dG~V~IwDl~s~~~v~~~~aH~~pIs-aLaFSpdG~lLATaS~dG~~IrVWdi 399 (787)
++..||+|+|||+.+++.+.+|++|...+. +++|||||++|||||.|++ |||||+
T Consensus 300 SgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSPDG~~LaSGS~D~T-IklWd~ 355 (356)
T 2w18_A 300 AILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSGTDSHLLAGQKDGN-IFVYHY 355 (356)
T ss_dssp EEETTSCEEEEETTTCSEEEEECCC--CCCCEEEECSSSSEEEEECTTSC-EEEEEE
T ss_pred EEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEECCCCCEEEEEECCCc-EEEecC
Confidence 456789999999999999999999987655 6999999999999999775 999995
No 120
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.69 E-value=9.8e-15 Score=159.60 Aligned_cols=230 Identities=11% Similarity=0.127 Sum_probs=158.4
Q ss_pred CCeEEEEEecCc-EEEEEccCCCceeEe-----eeeccCcEEEEEEecCCCCCCCCCCccccCcEEEEEEcCCCCCCCCC
Q 003907 74 FKQVLLLGYQNG-FQVLDVEDASNFNEL-----VSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPG 147 (787)
Q Consensus 74 ~~~vL~lG~~~G-~qVWdv~~~~~~~el-----ls~~dg~V~~v~~lP~P~~~~~~d~F~~srpLLavV~~d~~~~~~~~ 147 (787)
.+.+++++..+| +++||++. +++... +..|.+.|..+.+.|+ ..+++. +..
T Consensus 133 ~~~~~~~~~~~~~i~~~d~~~-g~~~~~~~~~~~~~~~~~v~~~~~~~~-------------~~~~~s-~~~-------- 189 (433)
T 3bws_A 133 NTRLAIPLLEDEGMDVLDINS-GQTVRLSPPEKYKKKLGFVETISIPEH-------------NELWVS-QMQ-------- 189 (433)
T ss_dssp SSEEEEEBTTSSSEEEEETTT-CCEEEECCCHHHHTTCCEEEEEEEGGG-------------TEEEEE-EGG--------
T ss_pred CCeEEEEeCCCCeEEEEECCC-CeEeeecCcccccccCCceeEEEEcCC-------------CEEEEE-ECC--------
Confidence 467788887765 99999964 555552 3356788999998653 125433 211
Q ss_pred CCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCC-CcEEEEEecC--CeEE-EE-eCCeEEEEECCCCc
Q 003907 148 QNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFR-SSVCMVRCSP--RIVA-VG-LATQIYCFDALTLE 222 (787)
Q Consensus 148 ~~~~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~v~tL~f~-s~V~sV~~s~--~~La-V~-~~~~I~iwD~~T~e 222 (787)
+++|++||+++++.+.++..+ ..+..+++++ +.|+ ++ .++.|++||+.+++
T Consensus 190 ------------------------d~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~ 245 (433)
T 3bws_A 190 ------------------------ANAVHVFDLKTLAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKL 245 (433)
T ss_dssp ------------------------GTEEEEEETTTCCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTE
T ss_pred ------------------------CCEEEEEECCCceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCc
Confidence 258999999999999999754 5899999987 4554 44 35789999999988
Q ss_pred eeEEEEecCCcccCCCCccccccccceeEEcc--ceEEEecCCceecCcceeccccCCCCCcCCCcCCCCCceeEeeehh
Q 003907 223 NKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP--RWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAME 300 (787)
Q Consensus 223 ~l~tl~t~p~p~~~~~~~~~~~~~~~~lAlsp--r~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~sp~~g~lva~~a~d 300 (787)
.+..+..+.. ...++++| ++|++++...
T Consensus 246 ~~~~~~~~~~--------------~~~~~~~~~g~~l~~~~~~~------------------------------------ 275 (433)
T 3bws_A 246 EIRKTDKIGL--------------PRGLLLSKDGKELYIAQFSA------------------------------------ 275 (433)
T ss_dssp EEEECCCCSE--------------EEEEEECTTSSEEEEEEEES------------------------------------
T ss_pred EEEEecCCCC--------------ceEEEEcCCCCEEEEEECCC------------------------------------
Confidence 7655443111 12345544 3333332100
Q ss_pred hhhhhhcccceeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCC
Q 003907 301 HSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPS 380 (787)
Q Consensus 301 ~sk~la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~v~~~~aH~~pIsaLaFSpd 380 (787)
+ . ....+|.|++||+.+++.+..+ .|...+.+++|+|+
T Consensus 276 -----------------------~-----------~-------~~~~dg~i~~~d~~~~~~~~~~-~~~~~~~~~~~~~~ 313 (433)
T 3bws_A 276 -----------------------S-----------N-------QESGGGRLGIYSMDKEKLIDTI-GPPGNKRHIVSGNT 313 (433)
T ss_dssp -----------------------C-----------T-------TCSCCEEEEEEETTTTEEEEEE-EEEECEEEEEECSS
T ss_pred -----------------------C-----------c-------cccCCCeEEEEECCCCcEEeec-cCCCCcceEEECCC
Confidence 0 0 0025889999999998877665 56668999999999
Q ss_pred CCEE-EEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeC--------
Q 003907 381 GTLL-VTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSS-------- 451 (787)
Q Consensus 381 G~lL-ATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~LAs~S~-------- 451 (787)
|+.| ++++. +..|++||+.. + ..+..+. ....+.+++|+|||++|++++.
T Consensus 314 g~~l~~~~~~-~~~v~v~d~~~-------~----------~~~~~~~---~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~ 372 (433)
T 3bws_A 314 ENKIYVSDMC-CSKIEVYDLKE-------K----------KVQKSIP---VFDKPNTIALSPDGKYLYVSCRGPNHPTEG 372 (433)
T ss_dssp TTEEEEEETT-TTEEEEEETTT-------T----------EEEEEEE---CSSSEEEEEECTTSSEEEEEECCCCCTTTC
T ss_pred CCEEEEEecC-CCEEEEEECCC-------C----------cEEEEec---CCCCCCeEEEcCCCCEEEEEecCCCccccc
Confidence 9755 55555 55699999853 2 3444443 2345899999999999998887
Q ss_pred -------CCeEEEEeCCCC
Q 003907 452 -------KGTCHVFVLSPF 463 (787)
Q Consensus 452 -------dgTVhIwdl~~~ 463 (787)
||+|++||+...
T Consensus 373 ~~~~g~~dg~v~~~d~~~~ 391 (433)
T 3bws_A 373 YLKKGLVLGKVYVIDTTTD 391 (433)
T ss_dssp TTSCCSSCCEEEEEETTTT
T ss_pred cccccccceEEEEEECCCC
Confidence 579999998753
No 121
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=99.69 E-value=3.8e-15 Score=154.79 Aligned_cols=225 Identities=14% Similarity=0.119 Sum_probs=148.0
Q ss_pred CEEEEEECCCCeEEEEEeCC---CcEEEEEecC--CeEEEEe-CCeEEEEECCCCceeEEEEecCCcccCCCCccccccc
Q 003907 173 TAVRFYSFQSHCYEHVLRFR---SSVCMVRCSP--RIVAVGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVG 246 (787)
Q Consensus 173 ~tVrlWdlktg~~v~tL~f~---s~V~sV~~s~--~~LaV~~-~~~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~~ 246 (787)
++|+|||+.+|+++++++++ ..|.+|++++ ++||+|. ++.|++||+.+++.+.++..|...
T Consensus 45 ~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~------------- 111 (318)
T 4ggc_A 45 NSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSAR------------- 111 (318)
T ss_dssp TEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSC-------------
T ss_pred CEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEecCccce-------------
Confidence 58999999999999999754 3799999988 6788765 567999999999999988876653
Q ss_pred cceeEEccceEEEecCCceecCcceeccccCCCCCcCCCcCCCCCceeEeeehhhhhhhhcccceeecccccccCCCCCC
Q 003907 247 YGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSS 326 (787)
Q Consensus 247 ~~~lAlspr~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~ 326 (787)
...++..++.|+.++.+..+. .+..... ...+ +++.++.. ..
T Consensus 112 ~~~~~~~~~~l~s~~~~~~~~-----~~~~~~~-----------~~~~----------------~~~~~~~~------~~ 153 (318)
T 4ggc_A 112 VGSLSWNSYILSSGSRSGHIH-----HHDVRVA-----------EHHV----------------ATLSGHSQ------EV 153 (318)
T ss_dssp EEEEEEETTEEEEEETTSEEE-----EEETTSS-----------SCEE----------------EEEECCSS------CE
T ss_pred EEEeecCCCEEEEEecCCceE-----eeecCCC-----------ceeE----------------EEEcCccC------ce
Confidence 233455557888876542110 0111100 0000 01111000 00
Q ss_pred CCcccCCccccccccccccCCCceEEEEECCCCc----EEEEeccCCCCeEEEEECCCCCE-E--EEEEcCCCEEEEEeC
Q 003907 327 SPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRA----IISQFKAHTSPISALCFDPSGTL-L--VTASVYGNNINIFRI 399 (787)
Q Consensus 327 ~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~----~v~~~~aH~~pIsaLaFSpdG~l-L--ATaS~dG~~IrVWdi 399 (787)
....+.+.. ..++++..||+|+|||+.+++ .......|..+|.+++++|++.. + ++++. +..|+|||.
T Consensus 154 ~~~~~~~~~----~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~-~~~i~lwd~ 228 (318)
T 4ggc_A 154 CGLRWAPDG----RHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTS-DRHIRIWNV 228 (318)
T ss_dssp EEEEECTTS----SEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTT-TCEEEEEET
T ss_pred EEEEEcCCC----CEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCC-CCEEEEEec
Confidence 011111111 124567889999999998765 34556678999999999997653 3 34445 456999998
Q ss_pred CCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEe--CCCeEEEEeCCCCCCcccccccc
Q 003907 400 MPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVS--SKGTCHVFVLSPFGGDSGFQTLS 473 (787)
Q Consensus 400 ~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~LAs~S--~dgTVhIwdl~~~gg~~~~~~H~ 473 (787)
... ....... +...|..++|+|+++.+++++ .|++|+|||+........+.+|.
T Consensus 229 ~~~-----------------~~~~~~~---~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~ 284 (318)
T 4ggc_A 229 CSG-----------------ACLSAVD---AHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHT 284 (318)
T ss_dssp TTC-----------------CEEEEEE---CSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCS
T ss_pred ccc-----------------ccccccc---ceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEcCCC
Confidence 541 1222222 234689999999999988765 79999999998766556677775
No 122
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.69 E-value=1.3e-15 Score=167.20 Aligned_cols=224 Identities=8% Similarity=-0.039 Sum_probs=116.4
Q ss_pred CCEEEEEECCCCeEEEEE-----e-CCCcEEEEEecC----------CeEEEEe-CCeEEEEECCCCceeEEEEecCCcc
Q 003907 172 PTAVRFYSFQSHCYEHVL-----R-FRSSVCMVRCSP----------RIVAVGL-ATQIYCFDALTLENKFSVLTYPVPQ 234 (787)
Q Consensus 172 p~tVrlWdlktg~~v~tL-----~-f~s~V~sV~~s~----------~~LaV~~-~~~I~iwD~~T~e~l~tl~t~p~p~ 234 (787)
+++|+|||+++++..... + +...|.+|+|+| ++||.+. |++|+|||+.+.+.+..+..+..+
T Consensus 110 d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~~~~~~~~~~- 188 (393)
T 4gq1_A 110 DNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGPILAGYPLSSP- 188 (393)
T ss_dssp TSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEEEEEEEECSSC-
T ss_pred CCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCceeeeecCCCCC-
Confidence 468999999999765432 2 346899999975 5788765 568999999988877777766553
Q ss_pred cCCCCccccccccceeEEcc---ceEEEecCCceecCcceeccccCCCCCcCCCcCCCCCceeEeeehhhhhhhhcccce
Q 003907 235 LAGQGAVGINVGYGPMAVGP---RWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSK 311 (787)
Q Consensus 235 ~~~~~~~~~~~~~~~lAlsp---r~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~sp~~g~lva~~a~d~sk~la~G~~k 311 (787)
...++++| ++|+.++.+.. ...|+..++....
T Consensus 189 ------------v~~v~~~p~~~~~l~~~~~d~~-----v~~wd~~t~~~~~---------------------------- 223 (393)
T 4gq1_A 189 ------------GISVQFRPSNPNQLIVGERNGN-----IRIFDWTLNLSAE---------------------------- 223 (393)
T ss_dssp ------------EEEEEEETTEEEEEEEEETTSE-----EEEEETTCCC-------------------------------
T ss_pred ------------cEEEEECCCCCceEEecCCCCE-----EEEEECCCCcccc----------------------------
Confidence 23567766 35666554321 1123322110000
Q ss_pred eecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEEC-CCCCEEEEEEcC
Q 003907 312 TLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFD-PSGTLLVTASVY 390 (787)
Q Consensus 312 tls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~v~~~~aH~~pIsaLaFS-pdG~lLATaS~d 390 (787)
.+... +.. . .+ .+.-++...........+|...|.+++|+ |||++|++++.|
T Consensus 224 ~~~~~-----~~~-~--------------------~~-~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d 276 (393)
T 4gq1_A 224 ENSQT-----ELV-K--------------------NP-WLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKS 276 (393)
T ss_dssp ------------C-S--------------------CC-CSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEECTT
T ss_pred ccccc-----CCc-c--------------------cc-eEEecccccceeeeecccccccceeeeeecCCCCEEEEEeCC
Confidence 00000 000 0 00 00000000011112335788999999996 899999999995
Q ss_pred CCEEEEEeCCCCcccC-CCCCCccccCCc-ceEEEEEecccccccEEEEEEcc--CCCEEEEEeCCCeEEEEeCCCCCCc
Q 003907 391 GNNINIFRIMPSCMRS-GSGNHKYDWNSS-HVHLYKLHRGITSATIQDICFSH--YSQWIAIVSSKGTCHVFVLSPFGGD 466 (787)
Q Consensus 391 G~~IrVWdi~~~~~~~-~~g~~~~~~~~s-~~~l~~l~rG~~~a~I~slaFSp--Dg~~LAs~S~dgTVhIwdl~~~gg~ 466 (787)
+ .++|||+....... ..+.....+... ........ ....+....|+| |+.++++++.||+|+|||+.+....
T Consensus 277 ~-~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~ 352 (393)
T 4gq1_A 277 G-AWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGIS---LFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSN 352 (393)
T ss_dssp S-EEEEEEC-------------------CCSCSEEEEC---SSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCC
T ss_pred C-CEEEEECccCCCCceEeeecCccccEEEcccccccc---ccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEE
Confidence 5 59999986421100 000000000000 00001111 111122334444 5567788899999999999876555
Q ss_pred cccccc
Q 003907 467 SGFQTL 472 (787)
Q Consensus 467 ~~~~~H 472 (787)
..+..|
T Consensus 353 ~~~~~~ 358 (393)
T 4gq1_A 353 SIPIQL 358 (393)
T ss_dssp EEEEEC
T ss_pred EEecCC
Confidence 445555
No 123
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.68 E-value=3.4e-15 Score=159.85 Aligned_cols=218 Identities=9% Similarity=0.087 Sum_probs=142.8
Q ss_pred EEEEecCc-EEEEEccC--------CCc-eeEeeeeccCcEEEEEEecCCCCCCCCCCccccCcEEEEEEcCCCCCCCCC
Q 003907 78 LLLGYQNG-FQVLDVED--------ASN-FNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPG 147 (787)
Q Consensus 78 L~lG~~~G-~qVWdv~~--------~~~-~~ells~~dg~V~~v~~lP~P~~~~~~d~F~~srpLLavV~~d~~~~~~~~ 147 (787)
|++|..+| ++||+.+. .++ +......|.++|.++.+.|.. ...+|+.++.
T Consensus 88 ~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-----------~~~~l~s~s~--------- 147 (343)
T 3lrv_A 88 IISRGPCNRLLLLYPGNQITILDSKTNKVLREIEVDSANEIIYMYGHNEV-----------NTEYFIWADN--------- 147 (343)
T ss_dssp EEEECSTTEEEEEETTTEEEEEETTTCCEEEEEECCCSSCEEEEECCC--------------CCEEEEEET---------
T ss_pred eEEecCCCeEEEEEccCceEEeecCCcceeEEeecCCCCCEEEEEcCCCC-----------CCCEEEEEeC---------
Confidence 66666655 89997642 122 222333555889999988610 1226654331
Q ss_pred CCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCC--CcEEEEEecC--CeEEEEe-CCeEEEEECCCCc
Q 003907 148 QNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFR--SSVCMVRCSP--RIVAVGL-ATQIYCFDALTLE 222 (787)
Q Consensus 148 ~~~~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~v~tL~f~--s~V~sV~~s~--~~LaV~~-~~~I~iwD~~T~e 222 (787)
+++|++||+++++.+..+..+ ..|.++++++ ++||+|. ++.|++||+.+++
T Consensus 148 ------------------------dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~ 203 (343)
T 3lrv_A 148 ------------------------RGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPD 203 (343)
T ss_dssp ------------------------TCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEEEESSCTT
T ss_pred ------------------------CCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCC
Confidence 258999999999998777433 4799999988 6888765 5689999999998
Q ss_pred ee-EEEEe-cCCcccCCCCccccccccceeEEcc--ceEEEecCCceecCcceeccccCCCCCcCCCcCCCCCceeEeee
Q 003907 223 NK-FSVLT-YPVPQLAGQGAVGINVGYGPMAVGP--RWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYA 298 (787)
Q Consensus 223 ~l-~tl~t-~p~p~~~~~~~~~~~~~~~~lAlsp--r~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~sp~~g~lva~~a 298 (787)
.+ .++.. |..+ ...++++| ++||
T Consensus 204 ~~~~~~~~~h~~~-------------v~~l~fs~~g~~l~---------------------------------------- 230 (343)
T 3lrv_A 204 QASSRFPVDEEAK-------------IKEVKFADNGYWMV---------------------------------------- 230 (343)
T ss_dssp SCCEECCCCTTSC-------------EEEEEECTTSSEEE----------------------------------------
T ss_pred CCccEEeccCCCC-------------EEEEEEeCCCCEEE----------------------------------------
Confidence 76 66654 4432 22344433 1221
Q ss_pred hhhhhhhhcccceeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECCCCcEEEEecc---CCCCeE--
Q 003907 299 MEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKA---HTSPIS-- 373 (787)
Q Consensus 299 ~d~sk~la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~v~~~~a---H~~pIs-- 373 (787)
.+. ++.|+|||+.+++.+..+.. |..++.
T Consensus 231 ---------------------------------------------s~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~ 264 (343)
T 3lrv_A 231 ---------------------------------------------VEC-DQTVVCFDLRKDVGTLAYPTYTIPEFKTGTV 264 (343)
T ss_dssp ---------------------------------------------EEE-SSBEEEEETTSSTTCBSSCCCBC-----CCE
T ss_pred ---------------------------------------------EEe-CCeEEEEEcCCCCcceeecccccccccccce
Confidence 122 34899999998876655554 555665
Q ss_pred EEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEcc---CCCEEEEEe
Q 003907 374 ALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSH---YSQWIAIVS 450 (787)
Q Consensus 374 aLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSp---Dg~~LAs~S 450 (787)
+++|+|+|++||+++..+..|+||++... ...++. ..+..++|++ +++.|++++
T Consensus 265 ~~~~~~~g~~l~~~s~~d~~i~v~~~~~~-----------------~~~~~~------~~~~~~~~~~~~~~~~~l~~~~ 321 (343)
T 3lrv_A 265 TYDIDDSGKNMIAYSNESNSLTIYKFDKK-----------------TKNWTK------DEESALCLQSDTADFTDMDVVC 321 (343)
T ss_dssp EEEECTTSSEEEEEETTTTEEEEEEECTT-----------------TCSEEE------EEEEECCC----CCCCEEEEEE
T ss_pred EEEECCCCCEEEEecCCCCcEEEEEEccc-----------------ccceEe------cCceeEecCccccccceeEEEe
Confidence 69999999999999984446999998431 111222 2467889999 999999999
Q ss_pred CCCeEEEEeCC
Q 003907 451 SKGTCHVFVLS 461 (787)
Q Consensus 451 ~dgTVhIwdl~ 461 (787)
.|+++.++-..
T Consensus 322 ~d~~~~~~~~~ 332 (343)
T 3lrv_A 322 GDGGIAAILKT 332 (343)
T ss_dssp ETTEEEEEEEC
T ss_pred cCCceEEEEec
Confidence 99999987543
No 124
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.68 E-value=1.7e-15 Score=181.01 Aligned_cols=210 Identities=14% Similarity=0.161 Sum_probs=144.2
Q ss_pred EeeeeccCcEEEEEEecCCCCCCCCCCccccCcEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEE
Q 003907 99 ELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFY 178 (787)
Q Consensus 99 ells~~dg~V~~v~~lP~P~~~~~~d~F~~srpLLavV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVrlW 178 (787)
.++..|.++|.++.+.|+. .+|++.+. +++|+||
T Consensus 3 ~~l~gH~~~V~~l~~s~dg-------------~~latg~~---------------------------------dg~I~vw 36 (753)
T 3jro_A 3 VIANAHNELIHDAVLDYYG-------------KRLATCSS---------------------------------DKTIKIF 36 (753)
T ss_dssp -----CCCCEEEECCCSSS-------------CCEEEEET---------------------------------TTEEEEE
T ss_pred eecccCcceeEEEEECCCC-------------CeEEEEEC---------------------------------CCcEEEE
Confidence 5678899999999988742 25654321 2689999
Q ss_pred ECC--CCeEEEEEeCC-CcEEEEEecC----CeEEEEe-CCeEEEEECCCCc--eeEEEEecCCcccCCCCccccccccc
Q 003907 179 SFQ--SHCYEHVLRFR-SSVCMVRCSP----RIVAVGL-ATQIYCFDALTLE--NKFSVLTYPVPQLAGQGAVGINVGYG 248 (787)
Q Consensus 179 dlk--tg~~v~tL~f~-s~V~sV~~s~----~~LaV~~-~~~I~iwD~~T~e--~l~tl~t~p~p~~~~~~~~~~~~~~~ 248 (787)
|+. +++.+.++..+ +.|.+|++++ ++|+++. ++.|++||+.+++ ....+..|..+ ..
T Consensus 37 d~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~h~~~-------------V~ 103 (753)
T 3jro_A 37 EVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSAS-------------VN 103 (753)
T ss_dssp EEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSC-------------EE
T ss_pred ecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEECCCCcccccccccCCCCC-------------eE
Confidence 998 55677777644 6999999973 5677655 5689999998876 33333333221 12
Q ss_pred eeEEccceEEEecCCceecCcceeccccCCCCCcCCCcCCCCCceeEeeehhhhhhhhcccceeecccccccCCCCCCCC
Q 003907 249 PMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSP 328 (787)
Q Consensus 249 ~lAlspr~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~ 328 (787)
.++++| +. .+.
T Consensus 104 ~v~~sp-------~~--------------------------~~~------------------------------------ 114 (753)
T 3jro_A 104 SVQWAP-------HE--------------------------YGP------------------------------------ 114 (753)
T ss_dssp EEEECC-------GG--------------------------GCS------------------------------------
T ss_pred EEEECC-------CC--------------------------CCC------------------------------------
Confidence 233321 10 000
Q ss_pred cccCCccccccccccccCCCceEEEEECCCC--cEEEEeccCCCCeEEEEECC-------------CCCEEEEEEcCCCE
Q 003907 329 VSPNSVWKVGRHAGADMDNAGIVVVKDFVTR--AIISQFKAHTSPISALCFDP-------------SGTLLVTASVYGNN 393 (787)
Q Consensus 329 ~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~--~~v~~~~aH~~pIsaLaFSp-------------dG~lLATaS~dG~~ 393 (787)
.++.+..||.|+|||+.++ .....+.+|..+|.+++|+| +|.+|++++.||+
T Consensus 115 ------------~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~- 181 (753)
T 3jro_A 115 ------------LLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNL- 181 (753)
T ss_dssp ------------EEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC---------CGGGCCEEEEETTSC-
T ss_pred ------------EEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCe-
Confidence 1123457899999999887 34556789999999999999 5999999999776
Q ss_pred EEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccC---CCEEEEEeCCCeEEEEeCCCCC
Q 003907 394 INIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHY---SQWIAIVSSKGTCHVFVLSPFG 464 (787)
Q Consensus 394 IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpD---g~~LAs~S~dgTVhIwdl~~~g 464 (787)
|++||+... . .....+..+. + +...|.+++|+|| +++|++++.||+|+|||+....
T Consensus 182 I~iwd~~~~-------~------~~~~~~~~~~-~-h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~ 240 (753)
T 3jro_A 182 VKIWKYNSD-------A------QTYVLESTLE-G-HSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQ 240 (753)
T ss_dssp EEEEEEETT-------T------TEEEEEEEEC-C-CSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSS
T ss_pred EEEEeccCC-------c------ccceeeeeec-C-CCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCC
Confidence 999998541 0 0012333333 3 3457999999999 9999999999999999998753
No 125
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.66 E-value=3.4e-14 Score=153.13 Aligned_cols=213 Identities=13% Similarity=0.059 Sum_probs=145.1
Q ss_pred CEEEEEECCCCeEEEEEeCCCcEEEEEecC--CeEE-EE-eCCeEEEEECCCCceeEEEEecCCcccCCCCccccccccc
Q 003907 173 TAVRFYSFQSHCYEHVLRFRSSVCMVRCSP--RIVA-VG-LATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYG 248 (787)
Q Consensus 173 ~tVrlWdlktg~~v~tL~f~s~V~sV~~s~--~~La-V~-~~~~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~~~~ 248 (787)
++|++||+++++.+..+..+..+.++++++ +.|+ ++ .++.|++||+.+++.+.++..+.. ..
T Consensus 12 ~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~~--------------v~ 77 (391)
T 1l0q_A 12 DNISVIDVTSNKVTATIPVGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSS--------------PQ 77 (391)
T ss_dssp TEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSSS--------------EE
T ss_pred CEEEEEECCCCeEEEEeecCCCcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCCC--------------cc
Confidence 689999999999999999999999999988 4554 44 467899999999998887764332 24
Q ss_pred eeEEcc--ceEEEecCC-ceecCcceeccccCCCCCcCCCcCCCCCceeEeeehhhhhhhhcccceeecccccccCCCCC
Q 003907 249 PMAVGP--RWLAYASNT-LLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGS 325 (787)
Q Consensus 249 ~lAlsp--r~LAyas~~-~~l~~~g~~s~q~lt~~~~s~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s 325 (787)
.++++| ++|++++.. .. ...|+..+ +..+. .+. ....
T Consensus 78 ~~~~spdg~~l~~~~~~~~~-----v~v~d~~~------------~~~~~----------------~~~-------~~~~ 117 (391)
T 1l0q_A 78 GVAVSPDGKQVYVTNMASST-----LSVIDTTS------------NTVAG----------------TVK-------TGKS 117 (391)
T ss_dssp EEEECTTSSEEEEEETTTTE-----EEEEETTT------------TEEEE----------------EEE-------CSSS
T ss_pred ceEECCCCCEEEEEECCCCE-----EEEEECCC------------CeEEE----------------EEe-------CCCC
Confidence 678887 677665432 11 11122111 11110 000 0001
Q ss_pred CCCcccCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCccc
Q 003907 326 SSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMR 405 (787)
Q Consensus 326 ~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~ 405 (787)
...+.++++.+.. ...+..++.|++||+.+++.+..+..|. .+.+++|+|+|++|+.++.++..|++||+..
T Consensus 118 ~~~~~~s~dg~~l---~~~~~~~~~v~~~d~~~~~~~~~~~~~~-~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~---- 189 (391)
T 1l0q_A 118 PLGLALSPDGKKL---YVTNNGDKTVSVINTVTKAVINTVSVGR-SPKGIAVTPDGTKVYVANFDSMSISVIDTVT---- 189 (391)
T ss_dssp EEEEEECTTSSEE---EEEETTTTEEEEEETTTTEEEEEEECCS-SEEEEEECTTSSEEEEEETTTTEEEEEETTT----
T ss_pred cceEEECCCCCEE---EEEeCCCCEEEEEECCCCcEEEEEecCC-CcceEEECCCCCEEEEEeCCCCEEEEEECCC----
Confidence 1122333333321 1245678999999999999998888775 5699999999998854444455699999854
Q ss_pred CCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEe---CCCeEEEEeCCCC
Q 003907 406 SGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVS---SKGTCHVFVLSPF 463 (787)
Q Consensus 406 ~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~LAs~S---~dgTVhIwdl~~~ 463 (787)
+ ..+..+.. ...+.+++|+|||++|++++ .+++|++||+...
T Consensus 190 ---~----------~~~~~~~~---~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~ 234 (391)
T 1l0q_A 190 ---N----------SVIDTVKV---EAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTN 234 (391)
T ss_dssp ---T----------EEEEEEEC---SSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTT
T ss_pred ---C----------eEEEEEec---CCCccceEECCCCCEEEEEecCcCCCcEEEEECCCC
Confidence 2 34444432 24689999999999999998 6899999999754
No 126
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.66 E-value=1.3e-13 Score=144.01 Aligned_cols=279 Identities=11% Similarity=0.078 Sum_probs=163.6
Q ss_pred eEEEEEecC-cEEEEEccCCCceeEeeeeccC--cEEEEEEecCCCCCCCCCCccccCcEEEEEEcCCCCCCCCCCCcCC
Q 003907 76 QVLLLGYQN-GFQVLDVEDASNFNELVSKRDG--PVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSH 152 (787)
Q Consensus 76 ~vL~lG~~~-G~qVWdv~~~~~~~ells~~dg--~V~~v~~lP~P~~~~~~d~F~~srpLLavV~~d~~~~~~~~~~~~~ 152 (787)
.+|+++..+ .+++||+.. +++...+..... .+..+.+.|+ ...|++...+
T Consensus 2 ~~~v~~~~~~~v~~~d~~~-~~~~~~~~~~~~~~~~~~~~~s~d-------------g~~l~v~~~~------------- 54 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEK-MAVDKVITIADAGPTPMVPMVAPG-------------GRIAYATVNK------------- 54 (337)
T ss_dssp EEEEEEETTTEEEEEETTT-TEEEEEEECTTCTTCCCCEEECTT-------------SSEEEEEETT-------------
T ss_pred cEEEEcCCCCeEEEEECCC-CcEEEEEEcCCCCCCccceEEcCC-------------CCEEEEEeCC-------------
Confidence 356666554 599999954 555444443221 4677777764 1244443321
Q ss_pred CCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCC------cEEEEEecC--CeEEEEe-------------CC
Q 003907 153 LGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRS------SVCMVRCSP--RIVAVGL-------------AT 211 (787)
Q Consensus 153 ~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~v~tL~f~s------~V~sV~~s~--~~LaV~~-------------~~ 211 (787)
.+.|.+||+.+++.+..+.... .+..+++++ +.|+++. ++
T Consensus 55 -------------------~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~ 115 (337)
T 1pby_B 55 -------------------SESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPT 115 (337)
T ss_dssp -------------------TTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCC
T ss_pred -------------------CCeEEEEECCCCCeEeeEEcCCcccccccccceEECCCCCEEEEEecccccccccccccCc
Confidence 2589999999999999888754 677888886 5777773 57
Q ss_pred eEEEEECCCCceeEEEEecCCcccCCCCccccccccceeEEcc--ceEEEecCCceecC--cceeccccCCC--CCcCCC
Q 003907 212 QIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP--RWLAYASNTLLLSN--SGRLSPQNLTP--SGVSPS 285 (787)
Q Consensus 212 ~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~~~~~lAlsp--r~LAyas~~~~l~~--~g~~s~q~lt~--~~~s~s 285 (787)
+|++||+.+++.+..+..... ...++++| ++|++++....+++ .+... ..+.. ...+..
T Consensus 116 ~i~v~d~~~~~~~~~~~~~~~--------------~~~~~~s~dg~~l~~~~~~i~~~d~~~~~~~-~~~~~~~~~~~~~ 180 (337)
T 1pby_B 116 RVALYDAETLSRRKAFEAPRQ--------------ITMLAWARDGSKLYGLGRDLHVMDPEAGTLV-EDKPIQSWEAETY 180 (337)
T ss_dssp EEEEEETTTTEEEEEEECCSS--------------CCCEEECTTSSCEEEESSSEEEEETTTTEEE-EEECSTTTTTTTB
T ss_pred eEEEEECCCCcEEEEEeCCCC--------------cceeEECCCCCEEEEeCCeEEEEECCCCcEe-eeeeccccCCCce
Confidence 899999999987776654222 13467887 67777754432221 11110 00000 000111
Q ss_pred cCCCCCceeEeeehhhhhhhhcccceeec-ccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECCCCcEE-E
Q 003907 286 TSPGGSSLVARYAMEHSKQFAAGLSKTLS-KYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAII-S 363 (787)
Q Consensus 286 ~sp~~g~lva~~a~d~sk~la~G~~ktls-~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~v-~ 363 (787)
++|++..+.+....+ +.+. -|......++ ..........|.+||+.+++.. .
T Consensus 181 ~s~dg~~l~~~~~~~----------~~~~~~~~~~~~~~~----------------~~~~~~~~~~v~~~d~~~~~~~~~ 234 (337)
T 1pby_B 181 AQPDVLAVWNQHESS----------GVMATPFYTARKDID----------------PADPTAYRTGLLTMDLETGEMAMR 234 (337)
T ss_dssp CCCBCCCCCCCCTTT----------TEEEEEEEEEBTTSC----------------TTSGGGEEEEEEEEETTTCCEEEE
T ss_pred eCCCccEEeeeccCC----------Cceeeeeeccccccc----------------cccccccccceEEEeCCCCCceEe
Confidence 122211110000000 0000 0000000000 0000011126899999998764 3
Q ss_pred EeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCC
Q 003907 364 QFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYS 443 (787)
Q Consensus 364 ~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg 443 (787)
.+..|...+.+++|+|||++|+++ ++ .|.+||+.. + ..+..+..+ ..+.+++|+|||
T Consensus 235 ~~~~~~~~~~~~~~s~dg~~l~~~--~~-~v~~~d~~~-------~----------~~~~~~~~~---~~~~~~~~s~dg 291 (337)
T 1pby_B 235 EVRIMDVFYFSTAVNPAKTRAFGA--YN-VLESFDLEK-------N----------ASIKRVPLP---HSYYSVNVSTDG 291 (337)
T ss_dssp EEEECSSCEEEEEECTTSSEEEEE--ES-EEEEEETTT-------T----------EEEEEEECS---SCCCEEEECTTS
T ss_pred ecCCCCCceeeEEECCCCCEEEEe--CC-eEEEEECCC-------C----------cCcceecCC---CceeeEEECCCC
Confidence 345677788999999999999988 24 599999853 2 344444432 347899999999
Q ss_pred CEEEEEeCCCeEEEEeCCCCC
Q 003907 444 QWIAIVSSKGTCHVFVLSPFG 464 (787)
Q Consensus 444 ~~LAs~S~dgTVhIwdl~~~g 464 (787)
++|++++.+++|++||+....
T Consensus 292 ~~l~~~~~~~~i~v~d~~~~~ 312 (337)
T 1pby_B 292 STVWLGGALGDLAAYDAETLE 312 (337)
T ss_dssp CEEEEESBSSEEEEEETTTCC
T ss_pred CEEEEEcCCCcEEEEECcCCc
Confidence 999999999999999998654
No 127
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.66 E-value=5.6e-15 Score=170.60 Aligned_cols=239 Identities=9% Similarity=0.019 Sum_probs=154.9
Q ss_pred CCeEEEEEecCc-EEEEEccCCCceeEeeeeccCcEEEEEEecCCCCCCCC----C---Cc--cccCcEEEEEEcCCCCC
Q 003907 74 FKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGC----E---GF--RKLHPFLLVVAGEDTNT 143 (787)
Q Consensus 74 ~~~vL~lG~~~G-~qVWdv~~~~~~~ells~~dg~V~~v~~lP~P~~~~~~----d---~F--~~srpLLavV~~d~~~~ 143 (787)
+++.+++++.++ ++ |... .+.+..|.+.|..|+++|+....... + .+ ....+..++.-.
T Consensus 26 DG~~iASas~D~TV~--d~~~----~~~l~gh~~~v~~V~FsPdg~~~~~~~~~~~~~~~~~~~~~~~V~~vawS----- 94 (588)
T 2j04_A 26 DGTLYLTTFPDISIG--QPKY----AKDINCNSKNLFHVKEFPLEFENKLDFELAQQNGLLNSQPVCYPRVCKPS----- 94 (588)
T ss_dssp TSCEEEECSSSEEEE--EECC----CSCCSSBGGGTEEEEEECCCCCCTTTTSCCCSSCSSTTSCSCCEEEEEEC-----
T ss_pred CCCEEEEEcCCceee--cccc----cceecCCCccEEEEEECCCCCcceEEEEeCCCceEeecCCCCcEEEEEEC-----
Confidence 688999988887 66 6432 24446788889999999887322100 0 11 111112111110
Q ss_pred CCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCC------cEEEEEecC--CeEEEEe-CCeEE
Q 003907 144 LAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRS------SVCMVRCSP--RIVAVGL-ATQIY 214 (787)
Q Consensus 144 ~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~v~tL~f~s------~V~sV~~s~--~~LaV~~-~~~I~ 214 (787)
.+|.+-. +...+++|++||.++ ++..+. +. .|.+|+|+| ++||+|. +++|+
T Consensus 95 -------------PdG~~LA----s~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVk 154 (588)
T 2j04_A 95 -------------PIDDWMA----VLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQ 154 (588)
T ss_dssp -------------SSSSCEE----EEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEE
T ss_pred -------------CCCCEEE----EEeCCCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEE
Confidence 1111100 011347899999644 777777 54 499999998 7888866 56899
Q ss_pred EEECCCCce-------eEEEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCcceeccccCCCCCcCCCcC
Q 003907 215 CFDALTLEN-------KFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTS 287 (787)
Q Consensus 215 iwD~~T~e~-------l~tl~t~p~p~~~~~~~~~~~~~~~~lAlspr~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~s 287 (787)
|||+.+++. +.++..+... +. .+...++++|
T Consensus 155 IWd~~~~~l~~~~~i~l~ti~~~~~g----h~-----~~V~sVawSP--------------------------------- 192 (588)
T 2j04_A 155 FFSIRKNSENTPEFYFESSIRLSDAG----SK-----DWVTHIVWYE--------------------------------- 192 (588)
T ss_dssp EEECCCCTTTCCCCEEEEEEECSCTT----CC-----CCEEEEEEET---------------------------------
T ss_pred EEECCCCccccccceeeeeeeccccc----cc-----ccEEEEEEcC---------------------------------
Confidence 999998753 4555432210 00 0012223322
Q ss_pred CCCCceeEeeehhhhhhhhcccceeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECCCCc---EEEE
Q 003907 288 PGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRA---IISQ 364 (787)
Q Consensus 288 p~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~---~v~~ 364 (787)
+ | + +.++.|++|++||+.+++ ...+
T Consensus 193 -d-g-L-------------------------------------------------aass~D~tVrlWd~~~~~~~~~~~t 220 (588)
T 2j04_A 193 -D-V-L-------------------------------------------------VAALSNNSVFSMTVSASSHQPVSRM 220 (588)
T ss_dssp -T-E-E-------------------------------------------------EEEETTCCEEEECCCSSSSCCCEEE
T ss_pred -C-c-E-------------------------------------------------EEEeCCCeEEEEECCCCccccceee
Confidence 1 1 1 122458899999998877 3456
Q ss_pred e-ccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEE--cc
Q 003907 365 F-KAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICF--SH 441 (787)
Q Consensus 365 ~-~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaF--Sp 441 (787)
+ .+|...|.+++|+ |+.||+++. + .|++||+.. + ++..+..| +.+.|++++| ||
T Consensus 221 L~~~h~~~V~svaFs--g~~LASa~~-~-tIkLWd~~~-------~-----------~~~~~~~g-h~~~V~~va~~~s~ 277 (588)
T 2j04_A 221 IQNASRRKITDLKIV--DYKVVLTCP-G-YVHKIDLKN-------Y-----------SISSLKTG-SLENFHIIPLNHEK 277 (588)
T ss_dssp EECCCSSCCCCEEEE--TTEEEEECS-S-EEEEEETTT-------T-----------EEEEEECS-CCSCCCEEEETTCS
T ss_pred ecccccCcEEEEEEE--CCEEEEEeC-C-eEEEEECCC-------C-----------eEEEEEcC-CCceEEEEEeeeCC
Confidence 7 4899999999999 799999984 5 699999853 1 34344446 5678999999 99
Q ss_pred CCCEEEEEeCCCeEEEEeCC
Q 003907 442 YSQWIAIVSSKGTCHVFVLS 461 (787)
Q Consensus 442 Dg~~LAs~S~dgTVhIwdl~ 461 (787)
|++.|++++.||+ +||.++
T Consensus 278 d~~~La~a~edG~-klw~~d 296 (588)
T 2j04_A 278 ESTILLMSNKTSY-KVLLED 296 (588)
T ss_dssp SCEEEEECSSCEE-EEEESS
T ss_pred CCCEEEEEcCCCC-EEEeec
Confidence 9999999999999 999987
No 128
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.64 E-value=6.7e-14 Score=161.70 Aligned_cols=320 Identities=11% Similarity=0.087 Sum_probs=187.3
Q ss_pred CCeEEEEEecCc-EEEEEccCCCceeEeeeeccCcEEEEEEecCCCCCCCCCCccccCcEEEEEEcCCCCCCCCCCCcCC
Q 003907 74 FKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSH 152 (787)
Q Consensus 74 ~~~vL~lG~~~G-~qVWdv~~~~~~~ells~~dg~V~~v~~lP~P~~~~~~d~F~~srpLLavV~~d~~~~~~~~~~~~~ 152 (787)
.++++++++.++ +.|||.+ .+++...+..+.. +..+.+.|+. .+|++...
T Consensus 148 ~~~~~vs~~~d~~V~v~D~~-t~~~~~~i~~g~~-~~~v~~spdg-------------~~l~v~~~-------------- 198 (543)
T 1nir_A 148 PNLFSVTLRDAGQIALVDGD-SKKIVKVIDTGYA-VHISRMSASG-------------RYLLVIGR-------------- 198 (543)
T ss_dssp GGEEEEEEGGGTEEEEEETT-TCCEEEEEECSTT-EEEEEECTTS-------------CEEEEEET--------------
T ss_pred CCEEEEEEcCCCeEEEEECC-CceEEEEEecCcc-cceEEECCCC-------------CEEEEECC--------------
Confidence 367888888776 9999995 4667666664333 8888888752 25655332
Q ss_pred CCCcccCCcCCCCCCCCCCCCEEEEEEC--CCCeEEEEEeCCCcEEEEEecC------CeEEEEe--CCeEEEEECCCCc
Q 003907 153 LGGVRDGMMDSQSGNCVNSPTAVRFYSF--QSHCYEHVLRFRSSVCMVRCSP------RIVAVGL--ATQIYCFDALTLE 222 (787)
Q Consensus 153 ~~~~r~g~~~~~~~~~~~~p~tVrlWdl--ktg~~v~tL~f~s~V~sV~~s~------~~LaV~~--~~~I~iwD~~T~e 222 (787)
.++|++||+ ++++++.++.....+..|++++ ++|+++. +++|.+||..|++
T Consensus 199 -------------------d~~V~v~D~~~~t~~~~~~i~~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~ 259 (543)
T 1nir_A 199 -------------------DARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLE 259 (543)
T ss_dssp -------------------TSEEEEEETTSSSCEEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCC
T ss_pred -------------------CCeEEEEECcCCCCcEEEEEecCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccc
Confidence 158999999 8999999999877889999986 5777764 5789999999999
Q ss_pred eeEEEEecCCcccCCCCccccccccceeEEcc---ceEEEecCCc--eecCcc--e-eccccC--CCCCcCCCcCCCCCc
Q 003907 223 NKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP---RWLAYASNTL--LLSNSG--R-LSPQNL--TPSGVSPSTSPGGSS 292 (787)
Q Consensus 223 ~l~tl~t~p~p~~~~~~~~~~~~~~~~lAlsp---r~LAyas~~~--~l~~~g--~-~s~q~l--t~~~~s~s~sp~~g~ 292 (787)
.+.++.+...... .+.+.. ......++++| ++++....+. .+++.. . .....+ ........++|++..
T Consensus 260 ~~~~i~~~g~~~~-~~~~~~-~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~spdg~~ 337 (543)
T 1nir_A 260 PKQIVSTRGMTVD-TQTYHP-EPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLHDGGWDSSHRY 337 (543)
T ss_dssp EEEEEECCEECSS-SCCEES-CCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEECCSSCCCEEECTTSCE
T ss_pred cceeecccCcccC-cccccc-CCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEeccCcCccCceECCCCCE
Confidence 9998875321000 000000 00123456665 3444433221 111110 0 000000 011122345666664
Q ss_pred eeEeeehhhhhhhhcccceeecccccccCCCCCC----CCcc-cCCccccccccccccC-CCceEEEEECCC-------C
Q 003907 293 LVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSS----SPVS-PNSVWKVGRHAGADMD-NAGIVVVKDFVT-------R 359 (787)
Q Consensus 293 lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~----~~~s-~s~~~~~~~~~~~s~~-~dG~V~IwDl~s-------~ 359 (787)
+.+-...+....+. ..-++.+....+.+.. .... ..++... ..+++. .+++|.|||+.+ .
T Consensus 338 l~va~~~~~~v~v~----D~~tg~l~~~i~~g~~ph~g~g~~~~~p~~g~---~~~s~~~~d~~V~v~d~~~~~~~~~~~ 410 (543)
T 1nir_A 338 FMTAANNSNKVAVI----DSKDRRLSALVDVGKTPHPGRGANFVHPKYGP---VWSTSHLGDGSISLIGTDPKNHPQYAW 410 (543)
T ss_dssp EEEEEGGGTEEEEE----ETTTTEEEEEEECSSSBCCTTCEEEEETTTEE---EEEEEBSSSSEEEEEECCTTTCTTTBT
T ss_pred EEEEecCCCeEEEE----ECCCCeEEEeeccCCCCCCCCCcccCCCCCcc---EEEeccCCCceEEEEEeCCCCCchhcC
Confidence 43222111111111 0001111111111100 0000 1122111 122333 579999999998 8
Q ss_pred cEEEEeccCCCCeEEEEECCCCCEEEEEEc---C---CCEEEEEeCCCCcccCCCCCCccccCCcceEEEE-Eec-----
Q 003907 360 AIISQFKAHTSPISALCFDPSGTLLVTASV---Y---GNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYK-LHR----- 427 (787)
Q Consensus 360 ~~v~~~~aH~~pIsaLaFSpdG~lLATaS~---d---G~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~-l~r----- 427 (787)
+++.++..|...+..|+|+|+|++|++++. | +..|.|||+.+. ..+++ +.-
T Consensus 411 ~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~-----------------~~~~~~~~v~~~~~ 473 (543)
T 1nir_A 411 KKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNL-----------------DAKYQVLPIAEWAD 473 (543)
T ss_dssp SEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCT-----------------TSCCEEECHHHHHC
T ss_pred eEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCC-----------------CCCeEEeechhhcc
Confidence 999999999999999999999999999872 1 335999999652 12222 110
Q ss_pred -ccccccEEEEEEccCCCEEEEE-----eCCCeEEEEeCCCCCCcc
Q 003907 428 -GITSATIQDICFSHYSQWIAIV-----SSKGTCHVFVLSPFGGDS 467 (787)
Q Consensus 428 -G~~~a~I~slaFSpDg~~LAs~-----S~dgTVhIwdl~~~gg~~ 467 (787)
+.....+..++|+|||++|+++ +.+++|.|||..+.....
T Consensus 474 ~~~~~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D~~t~~~~~ 519 (543)
T 1nir_A 474 LGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLKA 519 (543)
T ss_dssp CCSSCCEEEEEEECSSSSEEEEEEECCTTSCCEEEEEETTTTEEEE
T ss_pred cCCCCCceEeccCCCCCCEEEEEeecCCCCCCeEEEEECCCceEEE
Confidence 1112468999999999999977 347999999988765433
No 129
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.64 E-value=7e-14 Score=147.17 Aligned_cols=274 Identities=7% Similarity=-0.013 Sum_probs=166.6
Q ss_pred CeEEEEEecCc-EEEEEccCCCceeEeeeeccCcEEEEEEecCCCCCCCCCCccccCcEEEEEEcCCCCCCCCCCCcCCC
Q 003907 75 KQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHL 153 (787)
Q Consensus 75 ~~vL~lG~~~G-~qVWdv~~~~~~~ells~~dg~V~~v~~lP~P~~~~~~d~F~~srpLLavV~~d~~~~~~~~~~~~~~ 153 (787)
+.+++++..++ +.+||.+. +++...+..+..++ .+.+.|+. ..|+++..+
T Consensus 10 ~~~~v~~~~~~~v~~~d~~~-~~~~~~~~~~~~~~-~~~~s~dg-------------~~l~~~~~~-------------- 60 (331)
T 3u4y_A 10 NFGIVVEQHLRRISFFSTDT-LEILNQITLGYDFV-DTAITSDC-------------SNVVVTSDF-------------- 60 (331)
T ss_dssp CEEEEEEGGGTEEEEEETTT-CCEEEEEECCCCEE-EEEECSSS-------------CEEEEEEST--------------
T ss_pred CEEEEEecCCCeEEEEeCcc-cceeeeEEccCCcc-eEEEcCCC-------------CEEEEEeCC--------------
Confidence 56677776655 99999954 66666666555566 88887642 245443321
Q ss_pred CCcccCCcCCCCCCCCCCCCEEEEEECCCCeE-EEEEeCCCcEEE-EEecC--CeEEEEeCC----eEEEEECCCCceeE
Q 003907 154 GGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCY-EHVLRFRSSVCM-VRCSP--RIVAVGLAT----QIYCFDALTLENKF 225 (787)
Q Consensus 154 ~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~-v~tL~f~s~V~s-V~~s~--~~LaV~~~~----~I~iwD~~T~e~l~ 225 (787)
.++|.+||+++++. +..+........ +++++ ++|+++..+ .|++||+.+++.+.
T Consensus 61 ------------------~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~ 122 (331)
T 3u4y_A 61 ------------------CQTLVQIETQLEPPKVVAIQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFIS 122 (331)
T ss_dssp ------------------TCEEEEEECSSSSCEEEEEEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEE
T ss_pred ------------------CCeEEEEECCCCceeEEecccCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEE
Confidence 25899999999997 777776655555 88887 577766655 89999999998877
Q ss_pred EEEecCCcccCCCCccccccccceeEEcc--ceEEEecCC-ceecCcceeccccCCCCCcCCCcCCCCCceeEeeehhhh
Q 003907 226 SVLTYPVPQLAGQGAVGINVGYGPMAVGP--RWLAYASNT-LLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHS 302 (787)
Q Consensus 226 tl~t~p~p~~~~~~~~~~~~~~~~lAlsp--r~LAyas~~-~~l~~~g~~s~q~lt~~~~s~s~sp~~g~lva~~a~d~s 302 (787)
++.....| ..++++| ++|.++... .. ....|+.-. .+.+... .
T Consensus 123 ~~~~~~~~--------------~~~~~spdg~~l~~~~~~~~~----~i~~~~~~~-----------~g~~~~~-~---- 168 (331)
T 3u4y_A 123 TIPIPYDA--------------VGIAISPNGNGLILIDRSSAN----TVRRFKIDA-----------DGVLFDT-G---- 168 (331)
T ss_dssp EEECCTTE--------------EEEEECTTSSCEEEEEETTTT----EEEEEEECT-----------TCCEEEE-E----
T ss_pred EEECCCCc--------------cceEECCCCCEEEEEecCCCc----eEEEEEECC-----------CCcEeec-C----
Confidence 76543322 4578888 556554321 00 000111000 0100000 0
Q ss_pred hhhhcccceeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECCCCcE---EEEeccCCCCeEEEEECC
Q 003907 303 KQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAI---ISQFKAHTSPISALCFDP 379 (787)
Q Consensus 303 k~la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~---v~~~~aH~~pIsaLaFSp 379 (787)
.+. +........+.++++++... .....++.|.+||+.+++. +..+..+ ..+..++|+|
T Consensus 169 -------~~~-------~~~~~~~~~~~~spdg~~l~---v~~~~~~~v~v~d~~~~~~~~~~~~~~~~-~~~~~~~~sp 230 (331)
T 3u4y_A 169 -------QEF-------ISGGTRPFNITFTPDGNFAF---VANLIGNSIGILETQNPENITLLNAVGTN-NLPGTIVVSR 230 (331)
T ss_dssp -------EEE-------ECSSSSEEEEEECTTSSEEE---EEETTTTEEEEEECSSTTSCEEEEEEECS-SCCCCEEECT
T ss_pred -------Ccc-------ccCCCCccceEECCCCCEEE---EEeCCCCeEEEEECCCCcccceeeeccCC-CCCceEEECC
Confidence 000 00011112233444443221 2334578999999999887 7777755 5668899999
Q ss_pred CCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEeccc--ccc---cEEEEEEccCCCEEEEEeC-CC
Q 003907 380 SGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGI--TSA---TIQDICFSHYSQWIAIVSS-KG 453 (787)
Q Consensus 380 dG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~--~~a---~I~slaFSpDg~~LAs~S~-dg 453 (787)
||++|+.++..+..|.+||+.. +. ...+..+..+. ... ...+++|+|||++|++++. ++
T Consensus 231 dg~~l~v~~~~~~~i~~~d~~~-------~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~ 295 (331)
T 3u4y_A 231 DGSTVYVLTESTVDVFNFNQLS-------GT--------LSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISR 295 (331)
T ss_dssp TSSEEEEECSSEEEEEEEETTT-------TE--------EEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTT
T ss_pred CCCEEEEEEcCCCEEEEEECCC-------Cc--------eeeecccccccccCCCCcccccceEECCCCCEEEEecCCCC
Confidence 9998877766555699999854 20 11233333221 111 1356899999999876655 56
Q ss_pred eEEEEeCCC
Q 003907 454 TCHVFVLSP 462 (787)
Q Consensus 454 TVhIwdl~~ 462 (787)
+|.|||+..
T Consensus 296 ~v~v~d~~~ 304 (331)
T 3u4y_A 296 ELKVFTISG 304 (331)
T ss_dssp EEEEEETTS
T ss_pred cEEEEEecC
Confidence 999999975
No 130
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.62 E-value=3.3e-14 Score=164.25 Aligned_cols=234 Identities=11% Similarity=0.096 Sum_probs=151.9
Q ss_pred CCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCceeEeeeeccCc-----EEEEEEecCCCCCCCCCCcccc
Q 003907 56 KDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGP-----VSFLQMQPFPVKDDGCEGFRKL 129 (787)
Q Consensus 56 ~~~v~wa~Fd~l~~~~~~~~~vL~lG~~~G-~qVWdv~~~~~~~ells~~dg~-----V~~v~~lP~P~~~~~~d~F~~s 129 (787)
.+.|.-+.|.. +++.|+++..+| ++|||.+. +...+. |+.+ |.++++.|+. +
T Consensus 85 ~~~V~~vawSP-------dG~~LAs~s~dg~V~iwd~~~---~l~~l~-~~~~~~~~sv~svafSPDG-----------~ 142 (588)
T 2j04_A 85 VCYPRVCKPSP-------IDDWMAVLSNNGNVSVFKDNK---MLTNLD-SKGNLSSRTYHCFEWNPIE-----------S 142 (588)
T ss_dssp SCCEEEEEECS-------SSSCEEEEETTSCEEEEETTE---EEEECC-CSSCSTTTCEEEEEECSSS-----------S
T ss_pred CCcEEEEEECC-------CCCEEEEEeCCCcEEEEeCCc---eeeecc-CCCccccccEEEEEEcCCC-----------C
Confidence 45577777742 567788888776 99999643 566666 7764 9999999862 2
Q ss_pred CcEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCe-------EEEEEeCC-----CcEEE
Q 003907 130 HPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHC-------YEHVLRFR-----SSVCM 197 (787)
Q Consensus 130 rpLLavV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~-------~v~tL~f~-----s~V~s 197 (787)
+||+.+. +++|+|||++++. .+.+++.+ +.|++
T Consensus 143 --~LAsgs~---------------------------------DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~s 187 (588)
T 2j04_A 143 --SIVVGNE---------------------------------DGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTH 187 (588)
T ss_dssp --CEEEEET---------------------------------TSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEE
T ss_pred --EEEEEcC---------------------------------CCEEEEEECCCCccccccceeeeeeecccccccccEEE
Confidence 6766331 2699999999986 47777532 48999
Q ss_pred EEecCCeEEE-EeCCeEEEEECCCCcee---EEEE-ecCCcccCCCCccccccccceeEEccceEEEecCCceecCccee
Q 003907 198 VRCSPRIVAV-GLATQIYCFDALTLENK---FSVL-TYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRL 272 (787)
Q Consensus 198 V~~s~~~LaV-~~~~~I~iwD~~T~e~l---~tl~-t~p~p~~~~~~~~~~~~~~~~lAlspr~LAyas~~~~l~~~g~~ 272 (787)
|+++|+-|++ +.++.|++||+.+.+.. +++. .|... ...+++ .+ +.
T Consensus 188 VawSPdgLaass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~-------------V~svaF-------sg-~~-------- 238 (588)
T 2j04_A 188 IVWYEDVLVAALSNNSVFSMTVSASSHQPVSRMIQNASRRK-------------ITDLKI-------VD-YK-------- 238 (588)
T ss_dssp EEEETTEEEEEETTCCEEEECCCSSSSCCCEEEEECCCSSC-------------CCCEEE-------ET-TE--------
T ss_pred EEEcCCcEEEEeCCCeEEEEECCCCccccceeeecccccCc-------------EEEEEE-------EC-CE--------
Confidence 9999854555 55678999999877632 3443 22110 122333 11 10
Q ss_pred ccccCCCCCcCCCcCCCCCceeEeeehhhhhhhhcccceeecccccccCCCCCCCCcccCCccccccccccccCCCceEE
Q 003907 273 SPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVV 352 (787)
Q Consensus 273 s~q~lt~~~~s~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~ 352 (787)
++++. +|+|+
T Consensus 239 ---------------------------------------------------------------------LASa~-~~tIk 248 (588)
T 2j04_A 239 ---------------------------------------------------------------------VVLTC-PGYVH 248 (588)
T ss_dssp ---------------------------------------------------------------------EEEEC-SSEEE
T ss_pred ---------------------------------------------------------------------EEEEe-CCeEE
Confidence 01122 58999
Q ss_pred EEECCCCcEEEEeccCCCCeEEEEE--CCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCC--c-----cccCCcceEEE
Q 003907 353 VKDFVTRAIISQFKAHTSPISALCF--DPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNH--K-----YDWNSSHVHLY 423 (787)
Q Consensus 353 IwDl~s~~~v~~~~aH~~pIsaLaF--SpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~--~-----~~~~~s~~~l~ 423 (787)
+||+.+++......+|...|..++| +|||+.|++|+++|+ +||..... ..+..+.. . .-|......+.
T Consensus 249 LWd~~~~~~~~~~~gh~~~V~~va~~~s~d~~~La~a~edG~--klw~~d~~-~~spd~~l~a~~d~~v~lW~~~g~~l~ 325 (588)
T 2j04_A 249 KIDLKNYSISSLKTGSLENFHIIPLNHEKESTILLMSNKTSY--KVLLEDEL-HVTADNIIAPYLEKKFKKWSTIWNEFN 325 (588)
T ss_dssp EEETTTTEEEEEECSCCSCCCEEEETTCSSCEEEEECSSCEE--EEEESSSE-EEECCCSSHHHHHHHHHHTTTTTTSSS
T ss_pred EEECCCCeEEEEEcCCCceEEEEEeeeCCCCCEEEEEcCCCC--EEEeeccE-EECCCceEEEEcCCEEEEEECCCCcee
Confidence 9999988774444489999999999 999999999999775 99987321 01001110 0 00111111121
Q ss_pred EEecccccccEEEEEEccCCCEEEEEeC
Q 003907 424 KLHRGITSATIQDICFSHYSQWIAIVSS 451 (787)
Q Consensus 424 ~l~rG~~~a~I~slaFSpDg~~LAs~S~ 451 (787)
.+ .+ ...|++++|||||+.||+++.
T Consensus 326 ~~-~~--~~~I~~va~SPdG~~lA~~~~ 350 (588)
T 2j04_A 326 NY-ET--TLVIHGISLSPDGYSIAIVYD 350 (588)
T ss_dssp SS-CC--EEEEEEEEECTTSSEEEEEEE
T ss_pred ee-cc--ceEEEEEEECCCCCEEEEEEe
Confidence 11 11 245999999999999999874
No 131
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.59 E-value=2.5e-13 Score=150.82 Aligned_cols=172 Identities=18% Similarity=0.155 Sum_probs=120.7
Q ss_pred CEEEEEECCCCeEEEEE-eCCCcEEEEEecC--CeEEEEe-CC---eEEEEECCCCceeEEEEecCCcccCCCCcccccc
Q 003907 173 TAVRFYSFQSHCYEHVL-RFRSSVCMVRCSP--RIVAVGL-AT---QIYCFDALTLENKFSVLTYPVPQLAGQGAVGINV 245 (787)
Q Consensus 173 ~tVrlWdlktg~~v~tL-~f~s~V~sV~~s~--~~LaV~~-~~---~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~ 245 (787)
++|++||+..++ +..+ .....|.+++++| +.|+.+. ++ .|++||+.+++.. .+..++..
T Consensus 159 ~~i~i~d~~g~~-~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~-~l~~~~~~------------ 224 (415)
T 2hqs_A 159 YELRVSDYDGYN-QFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR-QVASFPRH------------ 224 (415)
T ss_dssp EEEEEEETTSCS-CEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-EEECCSSC------------
T ss_pred ceEEEEcCCCCC-CEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEE-EeecCCCc------------
Confidence 689999998654 4444 4567999999998 5677654 33 7999999998764 44443321
Q ss_pred ccceeEEcc--ceEEEecCCceecCcceeccccCCCCCcCCCcCCCCCceeEeeehhhhhhhhcccceeecccccccCCC
Q 003907 246 GYGPMAVGP--RWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPD 323 (787)
Q Consensus 246 ~~~~lAlsp--r~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~ 323 (787)
...++++| ++||+....
T Consensus 225 -~~~~~~spdg~~la~~~~~------------------------------------------------------------ 243 (415)
T 2hqs_A 225 -NGAPAFSPDGSKLAFALSK------------------------------------------------------------ 243 (415)
T ss_dssp -EEEEEECTTSSEEEEEECT------------------------------------------------------------
T ss_pred -ccCEEEcCCCCEEEEEEec------------------------------------------------------------
Confidence 23456655 455543210
Q ss_pred CCCCCcccCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCC--EEEEEeCCC
Q 003907 324 GSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGN--NINIFRIMP 401 (787)
Q Consensus 324 ~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~--~IrVWdi~~ 401 (787)
+.+..|.+||+.+++. ..+..|...+.+++|+|||++|++++.++. .|.+||+..
T Consensus 244 ----------------------~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~ 300 (415)
T 2hqs_A 244 ----------------------TGSLNLYVMDLASGQI-RQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNING 300 (415)
T ss_dssp ----------------------TSSCEEEEEETTTCCE-EECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTS
T ss_pred ----------------------CCCceEEEEECCCCCE-EeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCC
Confidence 1134689999998875 678889999999999999999999887443 466667743
Q ss_pred CcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCC---CeEEEEeCCC
Q 003907 402 SCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSK---GTCHVFVLSP 462 (787)
Q Consensus 402 ~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~LAs~S~d---gTVhIwdl~~ 462 (787)
+ ....+.. +...+.+++|||||++|++++.+ .+|.+||+..
T Consensus 301 -------~-----------~~~~l~~--~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~ 344 (415)
T 2hqs_A 301 -------G-----------APQRITW--EGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLAT 344 (415)
T ss_dssp -------S-----------CCEECCC--SSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTT
T ss_pred -------C-----------CEEEEec--CCCcccCeEECCCCCEEEEEECcCCceEEEEEECCC
Confidence 2 1122211 22358899999999999998875 5899999875
No 132
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.57 E-value=7.4e-13 Score=138.64 Aligned_cols=279 Identities=12% Similarity=0.067 Sum_probs=155.1
Q ss_pred eEEEEEec-CcEEEEEccCCCceeEee-eeccCcEEEEEEecCCCCCCCCCCccccCcEEEEEEcCCCCCCCCCCCcCCC
Q 003907 76 QVLLLGYQ-NGFQVLDVEDASNFNELV-SKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHL 153 (787)
Q Consensus 76 ~vL~lG~~-~G~qVWdv~~~~~~~ell-s~~dg~V~~v~~lP~P~~~~~~d~F~~srpLLavV~~d~~~~~~~~~~~~~~ 153 (787)
.+++.++. +.+++||++..+....+. -.+.+.+..+++.|+ ..+|+++..+
T Consensus 6 ~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~spd-------------g~~l~~~~~~-------------- 58 (343)
T 1ri6_A 6 TVYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPD-------------KRYLYVGVRP-------------- 58 (343)
T ss_dssp EEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTT-------------SSEEEEEETT--------------
T ss_pred EEEEeCCCCCeEEEEEECCCCcEEEeeeEecCCCCceEEECCC-------------CCEEEEeecC--------------
Confidence 34444354 459999997555443332 234567888888864 2255553321
Q ss_pred CCcccCCcCCCCCCCCCCCCEEEEEECC--CCe--EEEEEeCCCcEEEEEecC--CeEEEEe--CCeEEEEECCCC---c
Q 003907 154 GGVRDGMMDSQSGNCVNSPTAVRFYSFQ--SHC--YEHVLRFRSSVCMVRCSP--RIVAVGL--ATQIYCFDALTL---E 222 (787)
Q Consensus 154 ~~~r~g~~~~~~~~~~~~p~tVrlWdlk--tg~--~v~tL~f~s~V~sV~~s~--~~LaV~~--~~~I~iwD~~T~---e 222 (787)
.++|++|++. +++ .+..+.....+..+++++ +.|+++. ++.|++||+.++ +
T Consensus 59 ------------------~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~ 120 (343)
T 1ri6_A 59 ------------------EFRVLAYRIAPDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVG 120 (343)
T ss_dssp ------------------TTEEEEEEECTTTCCEEEEEEEECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEE
T ss_pred ------------------CCeEEEEEecCCCCceeeccccccCCCCcEEEEcCCCCEEEEEecCCCeEEEEECCCCcccc
Confidence 1589999997 665 455666666888899987 5566554 457999998433 3
Q ss_pred eeEEEEecCCcccCCCCccccccccceeEEcc--ceEEEec-CCceecCcceeccccCCCCCcCCCcCCCCCceeEeeeh
Q 003907 223 NKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP--RWLAYAS-NTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAM 299 (787)
Q Consensus 223 ~l~tl~t~p~p~~~~~~~~~~~~~~~~lAlsp--r~LAyas-~~~~l~~~g~~s~q~lt~~~~s~s~sp~~g~lva~~a~ 299 (787)
....+..... ...++++| ++|+.+. .+.. ...|+.-+ .+.+....
T Consensus 121 ~~~~~~~~~~--------------~~~~~~s~dg~~l~~~~~~~~~-----v~~~d~~~-----------~~~~~~~~-- 168 (343)
T 1ri6_A 121 VVDVVEGLDG--------------CHSANISPDNRTLWVPALKQDR-----ICLFTVSD-----------DGHLVAQD-- 168 (343)
T ss_dssp EEEEECCCTT--------------BCCCEECTTSSEEEEEEGGGTE-----EEEEEECT-----------TSCEEEEE--
T ss_pred ccccccCCCC--------------ceEEEECCCCCEEEEecCCCCE-----EEEEEecC-----------CCceeeec--
Confidence 3333322221 23577887 5666554 2110 01111110 01000000
Q ss_pred hhhhhhhcccceeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECCC--CcE--EEEec---cC---C
Q 003907 300 EHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVT--RAI--ISQFK---AH---T 369 (787)
Q Consensus 300 d~sk~la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s--~~~--v~~~~---aH---~ 369 (787)
. ..+. .........+.++++++... .....++.|.+||+.. ++. ...+. .+ .
T Consensus 169 -------~---~~~~-----~~~~~~~~~~~~~pdg~~l~---~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 230 (343)
T 1ri6_A 169 -------P---AEVT-----TVEGAGPRHMVFHPNEQYAY---CVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDT 230 (343)
T ss_dssp -------E---EEEE-----CSTTCCEEEEEECTTSSEEE---EEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSC
T ss_pred -------c---cccc-----cCCCCCcceEEECCCCCEEE---EEeCCCCEEEEEEecCCCCcEEEEeeccccCcccccc
Confidence 0 0000 00000111233344433221 1234678999999953 332 22222 11 2
Q ss_pred CCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEE
Q 003907 370 SPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIV 449 (787)
Q Consensus 370 ~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~LAs~ 449 (787)
..+.+++|+|+|++|+.+...+..|++||+... .+ ....+..+..+ ..+.+++|+|||++|+++
T Consensus 231 ~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~-----~~--------~~~~~~~~~~~---~~~~~~~~s~dg~~l~~~ 294 (343)
T 1ri6_A 231 RWAADIHITPDGRHLYACDRTASLITVFSVSED-----GS--------VLSKEGFQPTE---TQPRGFNVDHSGKYLIAA 294 (343)
T ss_dssp CCEEEEEECTTSSEEEEEETTTTEEEEEEECTT-----SC--------CEEEEEEEECS---SSCCCEEECTTSSEEEEE
T ss_pred CCccceEECCCCCEEEEEecCCCEEEEEEEcCC-----CC--------ceEEeeeecCC---CccceEEECCCCCEEEEe
Confidence 356789999999988766644567999998531 01 11233334322 237889999999999988
Q ss_pred e-CCCeEEEEeCCCCCC
Q 003907 450 S-SKGTCHVFVLSPFGG 465 (787)
Q Consensus 450 S-~dgTVhIwdl~~~gg 465 (787)
+ .++++.||+++...+
T Consensus 295 ~~~~~~v~v~~~d~~~g 311 (343)
T 1ri6_A 295 GQKSHHISVYEIVGEQG 311 (343)
T ss_dssp CTTTCEEEEEEEETTTT
T ss_pred cCCCCeEEEEEEcCCCc
Confidence 8 689999998876544
No 133
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.53 E-value=6e-13 Score=135.21 Aligned_cols=218 Identities=8% Similarity=0.018 Sum_probs=139.2
Q ss_pred CCEEEEEECCCCeEEEEEeCCCcEEEEEecC--CeEEEEeCCeEEEEECCC-CceeEEEEecCCcccCCCCccccccccc
Q 003907 172 PTAVRFYSFQSHCYEHVLRFRSSVCMVRCSP--RIVAVGLATQIYCFDALT-LENKFSVLTYPVPQLAGQGAVGINVGYG 248 (787)
Q Consensus 172 p~tVrlWdlktg~~v~tL~f~s~V~sV~~s~--~~LaV~~~~~I~iwD~~T-~e~l~tl~t~p~p~~~~~~~~~~~~~~~ 248 (787)
+++|++||+.+++......+...|.++++++ ++|+++.++.|++||+.+ ++.......+... ...
T Consensus 21 ~~~i~~~d~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~i~~~d~~~~~~~~~~~~~~~~~------------~~~ 88 (297)
T 2ojh_A 21 RSSIEIFNIRTRKMRVVWQTPELFEAPNWSPDGKYLLLNSEGLLYRLSLAGDPSPEKVDTGFATI------------CNN 88 (297)
T ss_dssp CEEEEEEETTTTEEEEEEEESSCCEEEEECTTSSEEEEEETTEEEEEESSSCCSCEECCCTTCCC------------BCS
T ss_pred ceeEEEEeCCCCceeeeccCCcceEeeEECCCCCEEEEEcCCeEEEEeCCCCCCceEeccccccc------------ccc
Confidence 4799999999999887777888999999988 688888889999999998 7654333222110 134
Q ss_pred eeEEcc--ceEEEecCC----ceecCcceeccccCCCCCcCCCcCCCCCceeEeeehhhhhhhhcccceeecccccccCC
Q 003907 249 PMAVGP--RWLAYASNT----LLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLP 322 (787)
Q Consensus 249 ~lAlsp--r~LAyas~~----~~l~~~g~~s~q~lt~~~~s~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p 322 (787)
.++++| ++|+++... ..++ .++.-+ +..+.+. .
T Consensus 89 ~~~~spdg~~l~~~~~~~~~~~~l~-----~~~~~~-----------------------------~~~~~~~-------~ 127 (297)
T 2ojh_A 89 DHGISPDGALYAISDKVEFGKSAIY-----LLPSTG-----------------------------GTPRLMT-------K 127 (297)
T ss_dssp CCEECTTSSEEEEEECTTTSSCEEE-----EEETTC-----------------------------CCCEECC-------S
T ss_pred ceEECCCCCEEEEEEeCCCCcceEE-----EEECCC-----------------------------CceEEee-------c
Confidence 578888 788887632 1110 000000 0000000 0
Q ss_pred CCCCCCcccCCccccccccccccCCCceEEEEECC-CCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCC
Q 003907 323 DGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFV-TRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMP 401 (787)
Q Consensus 323 ~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~-s~~~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~ 401 (787)
........++++.+... ..+..++.++||++. .......+..|...+.+++|+|+|++|+.++..+..++||++..
T Consensus 128 ~~~~~~~~~spdg~~l~---~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~ 204 (297)
T 2ojh_A 128 NLPSYWHGWSPDGKSFT---YCGIRDQVFDIYSMDIDSGVETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRV 204 (297)
T ss_dssp SSSEEEEEECTTSSEEE---EEEEETTEEEEEEEETTTCCEEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEET
T ss_pred CCCccceEECCCCCEEE---EEECCCCceEEEEEECCCCcceEcccCCCccccceECCCCCEEEEEecCCCCccEEEECC
Confidence 00011112333332211 134567888999853 22345677788899999999999999888775344589998743
Q ss_pred CcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCC-----------CeEEEEeCCCC
Q 003907 402 SCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSK-----------GTCHVFVLSPF 463 (787)
Q Consensus 402 ~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~LAs~S~d-----------gTVhIwdl~~~ 463 (787)
. + ..+..+.. +...+.+++|+|||++|++++.+ +.+.+||+...
T Consensus 205 ~------~----------~~~~~~~~--~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~ 259 (297)
T 2ojh_A 205 D------G----------SSVERITD--SAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGG 259 (297)
T ss_dssp T------S----------SCEEECCC--CSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSC
T ss_pred C------C----------CCcEEEec--CCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCC
Confidence 1 1 13333332 22468899999999999999876 56999998753
No 134
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.53 E-value=2e-11 Score=128.71 Aligned_cols=174 Identities=13% Similarity=0.098 Sum_probs=122.1
Q ss_pred CEEEEEECCCCeEEEEEeCCC----------cEEEEEecC--CeEEEEe---CCeEEEEECCCCceeEEEEecCCcccCC
Q 003907 173 TAVRFYSFQSHCYEHVLRFRS----------SVCMVRCSP--RIVAVGL---ATQIYCFDALTLENKFSVLTYPVPQLAG 237 (787)
Q Consensus 173 ~tVrlWdlktg~~v~tL~f~s----------~V~sV~~s~--~~LaV~~---~~~I~iwD~~T~e~l~tl~t~p~p~~~~ 237 (787)
+.|.+||+++++.+.++.... .+..+.+++ +.|+++. +..|++||+.+++....+......
T Consensus 111 ~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~---- 186 (353)
T 3vgz_A 111 SAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKM---- 186 (353)
T ss_dssp TEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTT----
T ss_pred CEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCc----
Confidence 589999999999999998753 268888977 5666654 457999999999877666421110
Q ss_pred CCccccccccceeEEccceEEEecCCceecCcceeccccCCCCCcCCCcCCCCCceeEeeehhhhhhhhcccceeecccc
Q 003907 238 QGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYC 317 (787)
Q Consensus 238 ~~~~~~~~~~~~lAlspr~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~ 317 (787)
...++++| + +..++
T Consensus 187 ---------~~~~~~s~-------d---------------------------g~~l~----------------------- 200 (353)
T 3vgz_A 187 ---------STGLALDS-------E---------------------------GKRLY----------------------- 200 (353)
T ss_dssp ---------CCCCEEET-------T---------------------------TTEEE-----------------------
T ss_pred ---------cceEEECC-------C---------------------------CCEEE-----------------------
Confidence 01233322 1 01000
Q ss_pred cccCCCCCCCCcccCCccccccccccccCCCceEEEEECCCCcEEEEecc----CCCCeEEEEECCCCCEEEEEEcCCCE
Q 003907 318 QELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKA----HTSPISALCFDPSGTLLVTASVYGNN 393 (787)
Q Consensus 318 ~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~v~~~~a----H~~pIsaLaFSpdG~lLATaS~dG~~ 393 (787)
.+..++.|.+||+.+++.+..+.. +...+..++|+|+|++|+.++.++..
T Consensus 201 --------------------------~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~ 254 (353)
T 3vgz_A 201 --------------------------TTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAE 254 (353)
T ss_dssp --------------------------EECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSE
T ss_pred --------------------------EEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCE
Confidence 112367889999999998887764 56678899999999988888876678
Q ss_pred EEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEe-CCCeEEEEeCCCC
Q 003907 394 INIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVS-SKGTCHVFVLSPF 463 (787)
Q Consensus 394 IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~LAs~S-~dgTVhIwdl~~~ 463 (787)
|.+||+.. + ..+..+..+. -..++|+|||++|++++ .+++|++||+...
T Consensus 255 v~~~d~~~-------~----------~~~~~~~~~~----~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~ 304 (353)
T 3vgz_A 255 VLVVDTRN-------G----------NILAKVAAPE----SLAVLFNPARNEAYVTHRQAGKVSVIDAKSY 304 (353)
T ss_dssp EEEEETTT-------C----------CEEEEEECSS----CCCEEEETTTTEEEEEETTTTEEEEEETTTT
T ss_pred EEEEECCC-------C----------cEEEEEEcCC----CceEEECCCCCEEEEEECCCCeEEEEECCCC
Confidence 99999854 2 2444444332 24699999999776666 6899999998753
No 135
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.48 E-value=2.1e-11 Score=129.77 Aligned_cols=105 Identities=11% Similarity=0.211 Sum_probs=68.5
Q ss_pred CceEEEEECCC--CcE--EEEeccCC------CCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCC
Q 003907 348 AGIVVVKDFVT--RAI--ISQFKAHT------SPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNS 417 (787)
Q Consensus 348 dG~V~IwDl~s--~~~--v~~~~aH~------~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~ 417 (787)
++.|.+||+.. ++. +..+..+. ..+..++|+|||++|+.+...+..|.|||+... |
T Consensus 208 ~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~------g-------- 273 (347)
T 3hfq_A 208 SSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTAD------G-------- 273 (347)
T ss_dssp TTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGG------G--------
T ss_pred CCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCC------C--------
Confidence 45677777653 332 22333222 348899999999988655544556999998531 1
Q ss_pred cceEEEEEecccccccEEEEEEccCCCEEEEEeCC-CeEEEEeCCCCCCccc
Q 003907 418 SHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSK-GTCHVFVLSPFGGDSG 468 (787)
Q Consensus 418 s~~~l~~l~rG~~~a~I~slaFSpDg~~LAs~S~d-gTVhIwdl~~~gg~~~ 468 (787)
....+..+..+ ...+.+++|+|||++|++++.+ ++|.||+++...+...
T Consensus 274 ~~~~~~~~~~~--~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d~~tg~l~ 323 (347)
T 3hfq_A 274 HLTLIQQISTE--GDFPRDFDLDPTEAFVVVVNQNTDNATLYARDLTSGKLS 323 (347)
T ss_dssp CEEEEEEEECS--SSCCCEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEE
T ss_pred cEEEeEEEecC--CCCcCeEEECCCCCEEEEEEcCCCcEEEEEEeCCCCeEE
Confidence 11334444321 2347899999999999888764 8999998877655543
No 136
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.47 E-value=3.2e-11 Score=126.69 Aligned_cols=88 Identities=10% Similarity=0.052 Sum_probs=65.1
Q ss_pred EEECCCCcE-EEEeccCCCCeEEEEECC-CCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccc
Q 003907 353 VKDFVTRAI-ISQFKAHTSPISALCFDP-SGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGIT 430 (787)
Q Consensus 353 IwDl~s~~~-v~~~~aH~~pIsaLaFSp-dG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~ 430 (787)
.+|..+++. +..+..+...+..++|+| +|++|+++ ++ .|.+||+.. + ..+..+..+
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~-~v~~~d~~~-------~----------~~~~~~~~~-- 294 (349)
T 1jmx_B 237 SVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LN-RLAKYDLKQ-------R----------KLIKAANLD-- 294 (349)
T ss_dssp EEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ES-EEEEEETTT-------T----------EEEEEEECS--
T ss_pred EEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cC-eEEEEECcc-------C----------eEEEEEcCC--
Confidence 366666552 223345667889999999 99999988 35 599999854 2 344444433
Q ss_pred cccEEEEEEccCCCEEEEEeCCCeEEEEeCCCC
Q 003907 431 SATIQDICFSHYSQWIAIVSSKGTCHVFVLSPF 463 (787)
Q Consensus 431 ~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~~~ 463 (787)
..+.+++|+|||++|++++.+++|++||+...
T Consensus 295 -~~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~ 326 (349)
T 1jmx_B 295 -HTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTL 326 (349)
T ss_dssp -SCCCEEEECSSSSCEEEESBSSEEEEEETTTT
T ss_pred -CCccceEECCCCCEEEEecCCCeEEEEecccc
Confidence 24678999999999999999999999999764
No 137
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.46 E-value=2.1e-12 Score=151.96 Aligned_cols=289 Identities=9% Similarity=-0.016 Sum_probs=165.8
Q ss_pred CCcEEEEEEeeccCCCCCCCeEEEEEec-Cc------EEEEEccCCCceeEeeeeccCc---------------------
Q 003907 56 KDQVTWAGFDRLEYGPSVFKQVLLLGYQ-NG------FQVLDVEDASNFNELVSKRDGP--------------------- 107 (787)
Q Consensus 56 ~~~v~wa~Fd~l~~~~~~~~~vL~lG~~-~G------~qVWdv~~~~~~~ells~~dg~--------------------- 107 (787)
.+.|..+.|.. +++.|+.+.. +| +.+||++ .++...++..+...
T Consensus 36 ~~~~~~~~~Sp-------dG~~la~~~~~d~~~~~~~i~~~d~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (741)
T 2ecf_A 36 GPTLMKPKVAP-------DGSRVTFLRGKDSDRNQLDLWSYDIG-SGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAA 107 (741)
T ss_dssp CCCCEEEEECT-------TSSEEEEEECCSSCTTEEEEEEEETT-TCCEEEEECGGGTC--------------------C
T ss_pred CCCCCCceEec-------CCCEEEEEeccCCCCcccEEEEEECC-CCceeEccchhhcccccccccchhhhhhhhhhhcc
Confidence 45677788853 4666666655 44 8999995 46677777654432
Q ss_pred ---EEEEEEecCCCCCCCCCCccccCcEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCC-
Q 003907 108 ---VSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSH- 183 (787)
Q Consensus 108 ---V~~v~~lP~P~~~~~~d~F~~srpLLavV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg- 183 (787)
|..+.+.|+ ...|+++. .++|.+||+.++
T Consensus 108 ~~~v~~~~~SpD-------------g~~l~~~~----------------------------------~~~i~~~d~~~~~ 140 (741)
T 2ecf_A 108 MTGIVDYQWSPD-------------AQRLLFPL----------------------------------GGELYLYDLKQEG 140 (741)
T ss_dssp CEESCCCEECTT-------------SSEEEEEE----------------------------------TTEEEEEESSSCS
T ss_pred ccCcceeEECCC-------------CCEEEEEe----------------------------------CCcEEEEECCCCC
Confidence 556666654 22555432 148999999988
Q ss_pred --eEEEEEeCCCcEEEEEecC--CeEEEEeCCeEEEEECCCCceeEEEEecCCcccCCCCcc-----ccccccceeEEcc
Q 003907 184 --CYEHVLRFRSSVCMVRCSP--RIVAVGLATQIYCFDALTLENKFSVLTYPVPQLAGQGAV-----GINVGYGPMAVGP 254 (787)
Q Consensus 184 --~~v~tL~f~s~V~sV~~s~--~~LaV~~~~~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~-----~~~~~~~~lAlsp 254 (787)
+..........+..++++| +.||.+.+++|++||+.+++............. .+.. ........++++|
T Consensus 141 ~~~~~~l~~~~~~~~~~~~SPDG~~la~~~~~~i~~~d~~~g~~~~~~~~~~~~~~--~g~~~~v~~~~~~~~~~~~~Sp 218 (741)
T 2ecf_A 141 KAAVRQLTHGEGFATDAKLSPKGGFVSFIRGRNLWVIDLASGRQMQLTADGSTTIG--NGIAEFVADEEMDRHTGYWWAP 218 (741)
T ss_dssp TTSCCBCCCSSSCEEEEEECTTSSEEEEEETTEEEEEETTTTEEEECCCCCCSSEE--ESCCCHHHHHHSCCCCSEEECT
T ss_pred cceEEEcccCCcccccccCCCCCCEEEEEeCCcEEEEecCCCCEEEeccCCcccee--ccccceeeeeccccccceEECC
Confidence 5433223446899999998 688888888999999998864332211111000 0000 0000024578888
Q ss_pred --ceEEEecCCceecCcceeccccCCCCCcCCCcCCCCCceeEeeehhhhhhhhcccceeecccccccCCCCCCCCcccC
Q 003907 255 --RWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPN 332 (787)
Q Consensus 255 --r~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~~s~s 332 (787)
++||++..+.- ....+. .. . ..|.... . ..+ . ++.
T Consensus 219 Dg~~l~~~~~d~~----~~~~~~--~~-~----~~p~~~~-~----------------~~~-~-----~~~--------- 255 (741)
T 2ecf_A 219 DDSAIAYARIDES----PVPVQK--RY-E----VYADRTD-V----------------IEQ-R-----YPA--------- 255 (741)
T ss_dssp TSSCEEEEEEECT----TSCEEE--EE-E----ECSSCEE-E----------------EEE-E-----CCB---------
T ss_pred CCCEEEEEEEcCC----CCceEe--cC-C----CCCCccc-c----------------eEe-e-----cCC---------
Confidence 78888753210 000000 00 0 0000000 0 000 0 000
Q ss_pred CccccccccccccCCCceEEEEECCC-CcEEEEec--cCCCCeEEEEECCCCCEEEEEEc----CCCEEEEEeCCCCccc
Q 003907 333 SVWKVGRHAGADMDNAGIVVVKDFVT-RAIISQFK--AHTSPISALCFDPSGTLLVTASV----YGNNINIFRIMPSCMR 405 (787)
Q Consensus 333 ~~~~~~~~~~~s~~~dG~V~IwDl~s-~~~v~~~~--aH~~pIsaLaFSpdG~lLATaS~----dG~~IrVWdi~~~~~~ 405 (787)
. ......-.|.+||+.+ ++...... .|...+..++| |||++|+.++. +...|.+||+..
T Consensus 256 -----~----g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~---- 321 (741)
T 2ecf_A 256 -----A----GDANVQVKLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLAS---- 321 (741)
T ss_dssp -----T----TSCCCEEEEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTT----
T ss_pred -----C----CCCCCeeEEEEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCC----
Confidence 0 0001123688889988 77554443 48889999999 99999998764 234589999854
Q ss_pred CCCCCCccccCCcceEEEEEecccccc---cEEEEEEccCCCEEEEEeCCCeEEEEeCCCCCCccccccc
Q 003907 406 SGSGNHKYDWNSSHVHLYKLHRGITSA---TIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQTL 472 (787)
Q Consensus 406 ~~~g~~~~~~~~s~~~l~~l~rG~~~a---~I~slaFSpDg~~LAs~S~dgTVhIwdl~~~gg~~~~~~H 472 (787)
| .....+. +.... .+.+++|||||++|++++.||+++||.++..++...+..|
T Consensus 322 ---g----------~~~~~~~-~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~~~~~~l~~~ 377 (741)
T 2ecf_A 322 ---N----------QQRVLAH-ETSPTWVPLHNSLRFLDDGSILWSSERTGFQHLYRIDSKGKAAALTHG 377 (741)
T ss_dssp ---C----------CEEEEEE-EECSSCCCCCSCCEECTTSCEEEEECTTSSCEEEEECSSSCEEESCCS
T ss_pred ---C----------ceEEEEE-cCCCCcCCcCCceEECCCCeEEEEecCCCccEEEEEcCCCCeeeeeec
Confidence 2 1222221 11111 3468999999999999999999999998754443333333
No 138
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.46 E-value=1.8e-11 Score=131.27 Aligned_cols=106 Identities=11% Similarity=0.252 Sum_probs=74.1
Q ss_pred CCceEEEEECCCCcE--EEEe---ccCCCCeEEEEECCCCCEEEEEEcC-CCEEEEEeCCCCcccCCCCCCccccCCcce
Q 003907 347 NAGIVVVKDFVTRAI--ISQF---KAHTSPISALCFDPSGTLLVTASVY-GNNINIFRIMPSCMRSGSGNHKYDWNSSHV 420 (787)
Q Consensus 347 ~dG~V~IwDl~s~~~--v~~~---~aH~~pIsaLaFSpdG~lLATaS~d-G~~IrVWdi~~~~~~~~~g~~~~~~~~s~~ 420 (787)
.++.|.+||+.+++. +..+ ..|......++|+|||++|+++..+ +..|.||++.+. .| ...
T Consensus 231 ~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~-----~g--------~~~ 297 (361)
T 3scy_A 231 IGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDET-----NG--------TLT 297 (361)
T ss_dssp TTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTT-----TC--------CEE
T ss_pred CCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCC-----CC--------cEE
Confidence 357888999887653 3333 3344567899999999999887775 467999998531 02 112
Q ss_pred EEEEEecccccccEEEEEEccCCCEEEEEe-CCCeEEEEeCCCCCCccc
Q 003907 421 HLYKLHRGITSATIQDICFSHYSQWIAIVS-SKGTCHVFVLSPFGGDSG 468 (787)
Q Consensus 421 ~l~~l~rG~~~a~I~slaFSpDg~~LAs~S-~dgTVhIwdl~~~gg~~~ 468 (787)
.+..+..| ..+.+++|||||++|++++ .+++|.||+++...+...
T Consensus 298 ~~~~~~~g---~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g~~~ 343 (361)
T 3scy_A 298 KVGYQLTG---IHPRNFIITPNGKYLLVACRDTNVIQIFERDQATGLLT 343 (361)
T ss_dssp EEEEEECS---SCCCEEEECTTSCEEEEEETTTTEEEEEEECTTTCCEE
T ss_pred EeeEecCC---CCCceEEECCCCCEEEEEECCCCCEEEEEEECCCCcEe
Confidence 33333322 3478899999999999988 679999999886655543
No 139
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.42 E-value=5.2e-12 Score=147.93 Aligned_cols=222 Identities=14% Similarity=0.078 Sum_probs=133.2
Q ss_pred CEEEEEECCCCeEEEEEeCCCcEEEEEecC--CeEEEEeCCeEEEEECCC-----CceeEEEEecCCcccCCCCcc---c
Q 003907 173 TAVRFYSFQSHCYEHVLRFRSSVCMVRCSP--RIVAVGLATQIYCFDALT-----LENKFSVLTYPVPQLAGQGAV---G 242 (787)
Q Consensus 173 ~tVrlWdlktg~~v~tL~f~s~V~sV~~s~--~~LaV~~~~~I~iwD~~T-----~e~l~tl~t~p~p~~~~~~~~---~ 242 (787)
++|++||+.+++..........+..++++| +.||.+.+++|++||+.+ ++........... . ..+.. .
T Consensus 101 ~~i~~~d~~~~~~~~l~~~~~~~~~~~~SpdG~~la~~~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~-~-~~g~~~~~e 178 (706)
T 2z3z_A 101 GGLVGFDMLARKVTYLFDTNEETASLDFSPVGDRVAYVRNHNLYIARGGKLGEGMSRAIAVTIDGTET-L-VYGQAVHQR 178 (706)
T ss_dssp TEEEEEETTTTEEEEEECCTTCCTTCEECTTSSEEEEEETTEEEEEECBCTTSCCCCCEESCSCCBTT-E-EESSCCGGG
T ss_pred CEEEEEECCCCceEEccCCcccccCCcCCCCCCEEEEEECCeEEEEecCcccccCCCcEEeccCCCCC-e-Ecccchhhh
Confidence 489999999998877666677888899988 688888888999999998 7643322111100 0 00000 0
Q ss_pred cccccceeEEcc--ceEEEecCCceecCcceeccccCCCCCcCCCcCCCCCceeEeeehhhhhhhhcccceeeccccccc
Q 003907 243 INVGYGPMAVGP--RWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQEL 320 (787)
Q Consensus 243 ~~~~~~~lAlsp--r~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l 320 (787)
.......++++| ++||++..+. .+...+..... . .. .... .. .+
T Consensus 179 e~~~~~~~~~SpDg~~la~~~~d~----~~~~~~~~~~~------~-~~-~~~~----------------~~-~~----- 224 (706)
T 2z3z_A 179 EFGIEKGTFWSPKGSCLAFYRMDQ----SMVKPTPIVDY------H-PL-EAES----------------KP-LY----- 224 (706)
T ss_dssp CTTCCCSEEECTTSSEEEEEEEEC----TTSCCEEEEEC------C-SS-SCEE----------------EE-EC-----
T ss_pred hcCCCceEEECCCCCEEEEEEECC----CCCceEEeecc------C-CC-CCce----------------EE-ee-----
Confidence 000024578888 8898875220 00000000000 0 00 0000 00 00
Q ss_pred CCCCCCCCcccCCccccccccccccCCCceEEEEECCCCcEEEEec--cCCCCeEEEEECCCCCEEEEEEcCC----CEE
Q 003907 321 LPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFK--AHTSPISALCFDPSGTLLVTASVYG----NNI 394 (787)
Q Consensus 321 ~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~v~~~~--aH~~pIsaLaFSpdG~lLATaS~dG----~~I 394 (787)
+|. . .....+..|.+||+.+++...... .|...+.+++|+|||++|++++.++ ..|
T Consensus 225 y~~-------------~-----g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v 286 (706)
T 2z3z_A 225 YPM-------------A-----GTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKV 286 (706)
T ss_dssp CCB-------------T-----TSCCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEE
T ss_pred CCC-------------C-----CCCCCeeEEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEE
Confidence 000 0 012245789999999887654442 5778899999999999999988754 269
Q ss_pred EEEeCCCCcccCCCCCCccccCCcceEEEEEecccccc---cEEEEEEcc--CCCEEEEEeCCCeEEEEeCCCCCC
Q 003907 395 NIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSA---TIQDICFSH--YSQWIAIVSSKGTCHVFVLSPFGG 465 (787)
Q Consensus 395 rVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a---~I~slaFSp--Dg~~LAs~S~dgTVhIwdl~~~gg 465 (787)
.+||+.. | ..+..+....... .+.+++||| ||++|++++.|++++||.++..++
T Consensus 287 ~~~d~~~-------g----------~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~ 345 (706)
T 2z3z_A 287 NAYDAET-------G----------RFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGR 345 (706)
T ss_dssp EEEETTT-------C----------CEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSC
T ss_pred EEEECCC-------C----------ceeeEEEEccCCCeECccCCceeecCCCCEEEEEEccCCccEEEEEECCCC
Confidence 9999853 2 1222222111111 246789999 999999999999999999874443
No 140
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.42 E-value=3.2e-12 Score=149.75 Aligned_cols=279 Identities=13% Similarity=0.038 Sum_probs=159.3
Q ss_pred CCeEEEEEecCcEEEEEccCCCceeEeeeeccC---cEEEEEEecCCCCCCCCCCccccCcEEEEEEcCCCCCCCCCCCc
Q 003907 74 FKQVLLLGYQNGFQVLDVEDASNFNELVSKRDG---PVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNR 150 (787)
Q Consensus 74 ~~~vL~lG~~~G~qVWdv~~~~~~~ells~~dg---~V~~v~~lP~P~~~~~~d~F~~srpLLavV~~d~~~~~~~~~~~ 150 (787)
++++++.+.++.+++||++ .++...++..+.. .|..+++.|+. + .||.+..+..
T Consensus 27 dg~~~~~~~dg~i~~~d~~-~g~~~~~~~~~~~~~~~v~~~~~SpDg-----------~--~l~~~~~~~~--------- 83 (723)
T 1xfd_A 27 DTEFIYREQKGTVRLWNVE-TNTSTVLIEGKKIESLRAIRYEISPDR-----------E--YALFSYNVEP--------- 83 (723)
T ss_dssp SSCBCCCCSSSCEEEBCGG-GCCCEEEECTTTTTTTTCSEEEECTTS-----------S--EEEEEESCCC---------
T ss_pred CCcEEEEeCCCCEEEEECC-CCcEEEEeccccccccccceEEECCCC-----------C--EEEEEecCcc---------
Confidence 4556655444569999996 4667777776664 48999999852 2 6666443221
Q ss_pred CCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCC----CcEEEEEecC--CeEEEEeCCeEEEEECCCCcee
Q 003907 151 SHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFR----SSVCMVRCSP--RIVAVGLATQIYCFDALTLENK 224 (787)
Q Consensus 151 ~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~v~tL~f~----s~V~sV~~s~--~~LaV~~~~~I~iwD~~T~e~l 224 (787)
++. ......|.+||+.+++. ..+... ..|..++++| +.||.+..++|++||+.+++..
T Consensus 84 -----~~~----------~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~~la~~~~~~i~~~~~~~g~~~ 147 (723)
T 1xfd_A 84 -----IYQ----------HSYTGYYVLSKIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQQLIFIFENNIYYCAHVGKQAI 147 (723)
T ss_dssp -----CSS----------SCCCSEEEEEESSSCCC-EECCCTTCCSCCCSBCCBCSSTTCEEEEETTEEEEESSSSSCCE
T ss_pred -----cee----------ecceeeEEEEECCCCce-EeccCCccccccccccEECCCCCEEEEEECCeEEEEECCCCceE
Confidence 000 01246899999999886 344322 2388899998 6888888889999999998765
Q ss_pred EEEEecCCcccCCCCccc------cccccceeEEcc--ceEEEecCCceecCcceeccccCCCCCcCCCcCCCCCceeEe
Q 003907 225 FSVLTYPVPQLAGQGAVG------INVGYGPMAVGP--RWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVAR 296 (787)
Q Consensus 225 ~tl~t~p~p~~~~~~~~~------~~~~~~~lAlsp--r~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~sp~~g~lva~ 296 (787)
.....+..... -.+.+. .......++++| ++|||+..+. .....++..... +
T Consensus 148 ~~~~~~~~~~~-~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~----~~~~~~~~~~~~----------~----- 207 (723)
T 1xfd_A 148 RVVSTGKEGVI-YNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAIND----SRVPIMELPTYT----------G----- 207 (723)
T ss_dssp EEECCCBTTTE-EEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEEC----TTSCEEEECCCS----------S-----
T ss_pred EEecCCCCCce-ECcccceeEEEEeccCcceEEECCCCCEEEEEEECC----CccceEEeeccC----------C-----
Confidence 43332211100 000000 000114588888 7898875321 000000000000 0
Q ss_pred eehhhhhhhhcccceeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECCCCcEEEEeccC------CC
Q 003907 297 YAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAH------TS 370 (787)
Q Consensus 297 ~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~v~~~~aH------~~ 370 (787)
...+. .....+..++ ....+..|.+||+.+++....+..| ..
T Consensus 208 ----------------------~~~~~--~~~~~~~~~G--------~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~ 255 (723)
T 1xfd_A 208 ----------------------SIYPT--VKPYHYPKAG--------SENPSISLHVIGLNGPTHDLEMMPPDDPRMREY 255 (723)
T ss_dssp ----------------------SSSCC--CEEEECCBTT--------SCCCEEEEEEEESSSSCCCEECCCCCCGGGSSE
T ss_pred ----------------------cCCCc--ceeccCCCCC--------CCCCeeEEEEEECCCCceeEEeeCCccCCCccc
Confidence 00000 0000000000 0122458999999998866667654 67
Q ss_pred CeEEEEECCCCCEEEEEEcCC---CEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccE----EEEEEccCC
Q 003907 371 PISALCFDPSGTLLVTASVYG---NNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATI----QDICFSHYS 443 (787)
Q Consensus 371 pIsaLaFSpdG~lLATaS~dG---~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I----~slaFSpDg 443 (787)
.+..++|||||++|++.+..+ ..|.+||+.. | .....+. +.+...+ .+++|||||
T Consensus 256 ~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~-------g----------~~~~~~~-~~~~~~~~~~~~~~~~spdg 317 (723)
T 1xfd_A 256 YITMVKWATSTKVAVTWLNRAQNVSILTLCDATT-------G----------VCTKKHE-DESEAWLHRQNEEPVFSKDG 317 (723)
T ss_dssp EEEEEEESSSSEEEEEEEETTSCEEEEEEEETTT-------C----------CEEEEEE-EECSSCCCCCCCCCEECTTS
T ss_pred eeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCC-------C----------cceEEEE-eccCCEEeccCCCceEcCCC
Confidence 899999999999998876532 4689999853 2 1222221 1111222 378999999
Q ss_pred CEEEEE--eCCC----eEEEEeCC
Q 003907 444 QWIAIV--SSKG----TCHVFVLS 461 (787)
Q Consensus 444 ~~LAs~--S~dg----TVhIwdl~ 461 (787)
++|+.. ..++ +.+||.++
T Consensus 318 ~~l~~~~~~~~~~~~~~~~l~~~d 341 (723)
T 1xfd_A 318 RKFFFIRAIPQGGRGKFYHITVSS 341 (723)
T ss_dssp CSEEEEEEECCSSSSCEEEEEEEC
T ss_pred CeEEEEEecccCCCcceeEEEEEe
Confidence 988754 4667 66666555
No 141
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.42 E-value=1.5e-11 Score=124.92 Aligned_cols=233 Identities=11% Similarity=0.055 Sum_probs=145.2
Q ss_pred CCcEEEEEEeeccCCCCCCCeEEEEEecCcEEEEEccCCCceeEeeeec-cCcEEEEEEecCCCCCCCCCCccccCcEEE
Q 003907 56 KDQVTWAGFDRLEYGPSVFKQVLLLGYQNGFQVLDVEDASNFNELVSKR-DGPVSFLQMQPFPVKDDGCEGFRKLHPFLL 134 (787)
Q Consensus 56 ~~~v~wa~Fd~l~~~~~~~~~vL~lG~~~G~qVWdv~~~~~~~ells~~-dg~V~~v~~lP~P~~~~~~d~F~~srpLLa 134 (787)
.+.|..+.|.. +++.|+.+.++.+.+||++..++...+...+ .+.|..+++.|+. .+|+
T Consensus 41 ~~~v~~~~~sp-------dg~~l~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg-------------~~l~ 100 (297)
T 2ojh_A 41 PELFEAPNWSP-------DGKYLLLNSEGLLYRLSLAGDPSPEKVDTGFATICNNDHGISPDG-------------ALYA 100 (297)
T ss_dssp SSCCEEEEECT-------TSSEEEEEETTEEEEEESSSCCSCEECCCTTCCCBCSCCEECTTS-------------SEEE
T ss_pred CcceEeeEECC-------CCCEEEEEcCCeEEEEeCCCCCCceEeccccccccccceEECCCC-------------CEEE
Confidence 44555566642 4678888888889999996425566666554 3677888888642 2666
Q ss_pred EEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCCcEEEEEecC--CeEE-EE-eC
Q 003907 135 VVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRSSVCMVRCSP--RIVA-VG-LA 210 (787)
Q Consensus 135 vV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~v~tL~f~s~V~sV~~s~--~~La-V~-~~ 210 (787)
++..+.. ....|.+|++.+++ ...+.....+..+++++ +.|+ ++ .+
T Consensus 101 ~~~~~~~-----------------------------~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~spdg~~l~~~~~~~ 150 (297)
T 2ojh_A 101 ISDKVEF-----------------------------GKSAIYLLPSTGGT-PRLMTKNLPSYWHGWSPDGKSFTYCGIRD 150 (297)
T ss_dssp EEECTTT-----------------------------SSCEEEEEETTCCC-CEECCSSSSEEEEEECTTSSEEEEEEEET
T ss_pred EEEeCCC-----------------------------CcceEEEEECCCCc-eEEeecCCCccceEECCCCCEEEEEECCC
Confidence 5442110 01467777777766 45565566789999987 5555 33 45
Q ss_pred CeEEEEE--CCCCceeEEEEecCCcccCCCCccccccccceeEEcc--ceEEEecCCceecCcceeccccCCCCCcCCCc
Q 003907 211 TQIYCFD--ALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP--RWLAYASNTLLLSNSGRLSPQNLTPSGVSPST 286 (787)
Q Consensus 211 ~~I~iwD--~~T~e~l~tl~t~p~p~~~~~~~~~~~~~~~~lAlsp--r~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~ 286 (787)
+.+.||+ +.+++. ..+..++.. ...++++| ++|+++.
T Consensus 151 ~~~~l~~~~~~~~~~-~~~~~~~~~-------------~~~~~~s~dg~~l~~~~------------------------- 191 (297)
T 2ojh_A 151 QVFDIYSMDIDSGVE-TRLTHGEGR-------------NDGPDYSPDGRWIYFNS------------------------- 191 (297)
T ss_dssp TEEEEEEEETTTCCE-EECCCSSSC-------------EEEEEECTTSSEEEEEE-------------------------
T ss_pred CceEEEEEECCCCcc-eEcccCCCc-------------cccceECCCCCEEEEEe-------------------------
Confidence 6677776 444432 222222110 12234433 2222221
Q ss_pred CCCCCceeEeeehhhhhhhhcccceeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECC-CCcEEEEe
Q 003907 287 SPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFV-TRAIISQF 365 (787)
Q Consensus 287 sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~-s~~~v~~~ 365 (787)
..++.++||++. .+..+..+
T Consensus 192 -----------------------------------------------------------~~~~~~~i~~~~~~~~~~~~~ 212 (297)
T 2ojh_A 192 -----------------------------------------------------------SRTGQMQIWRVRVDGSSVERI 212 (297)
T ss_dssp -----------------------------------------------------------CTTSSCEEEEEETTSSCEEEC
T ss_pred -----------------------------------------------------------cCCCCccEEEECCCCCCcEEE
Confidence 124566677764 44566778
Q ss_pred ccCCCCeEEEEECCCCCEEEEEEcCC----------CEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEE
Q 003907 366 KAHTSPISALCFDPSGTLLVTASVYG----------NNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQ 435 (787)
Q Consensus 366 ~aH~~pIsaLaFSpdG~lLATaS~dG----------~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~ 435 (787)
..|...+.+++|+|+|++|++++.++ ..|.+||+.. + ....+..+.. +...|.
T Consensus 213 ~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~-------~--------~~~~~~~~~~--~~~~~~ 275 (297)
T 2ojh_A 213 TDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDG-------G--------NVETLFDLFG--GQGTMN 275 (297)
T ss_dssp CCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTS-------C--------SCEEEEEEEE--STTTSC
T ss_pred ecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCC-------C--------CceeeeccCC--CCcccc
Confidence 88888999999999999999988753 4589999853 2 1134444432 234588
Q ss_pred EEEEccCCCEEEEEeCCC
Q 003907 436 DICFSHYSQWIAIVSSKG 453 (787)
Q Consensus 436 slaFSpDg~~LAs~S~dg 453 (787)
+++|+|||++|++++.+.
T Consensus 276 ~~~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 276 SPNWSPDGDEFAYVRYFP 293 (297)
T ss_dssp SCCBCTTSSEEEEEEECC
T ss_pred cceECCCCCEEEEEEecc
Confidence 899999999999888764
No 142
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.39 E-value=2.1e-11 Score=136.66 Aligned_cols=103 Identities=11% Similarity=0.140 Sum_probs=78.2
Q ss_pred ccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEE
Q 003907 344 DMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLY 423 (787)
Q Consensus 344 s~~~dG~V~IwDl~s~~~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~ 423 (787)
++..||+|+|||+.++..+....+|...|.+++|+|+|++||+++.||+ |+|||++. ....
T Consensus 167 s~s~Dg~v~iwD~~~~~~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~-v~iwd~~~------------------~~~~ 227 (434)
T 2oit_A 167 VCLADGSIAVLQVTETVKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGT-VVQYLPTL------------------QEKK 227 (434)
T ss_dssp EEETTSCEEEEEESSSEEEEEEECGGGCEEEEEECTTSSCEEEEETTSC-EEEECTTC------------------CEEE
T ss_pred EEECCCeEEEEEcCCCcceeeccCCCCceeEEEEcCCCCEEEEEcCCCc-EEEEccCC------------------cccc
Confidence 4567899999999998877777889999999999999999999999776 99999841 1222
Q ss_pred EEecc-----cccccEEEEEEccCCCEEEEEe-CCC------eEEEEeCCCCCC
Q 003907 424 KLHRG-----ITSATIQDICFSHYSQWIAIVS-SKG------TCHVFVLSPFGG 465 (787)
Q Consensus 424 ~l~rG-----~~~a~I~slaFSpDg~~LAs~S-~dg------TVhIwdl~~~gg 465 (787)
.+... .+...|.+++|++++.++++.+ .+| .+++|++...+.
T Consensus 228 ~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~~~ 281 (434)
T 2oit_A 228 VIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMALLPKKEE 281 (434)
T ss_dssp EECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEECCCTTT
T ss_pred cccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCceEEEEeccCCC
Confidence 22211 1123699999999999886644 443 389999986544
No 143
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.38 E-value=2.5e-10 Score=119.84 Aligned_cols=180 Identities=10% Similarity=0.118 Sum_probs=119.2
Q ss_pred CEEEEEECCCCeEEEEEeCCC-cEEEEEecC--CeEEEEe--CCeEEEEECCCCce-eEEEEecCCcccCCCCccccccc
Q 003907 173 TAVRFYSFQSHCYEHVLRFRS-SVCMVRCSP--RIVAVGL--ATQIYCFDALTLEN-KFSVLTYPVPQLAGQGAVGINVG 246 (787)
Q Consensus 173 ~tVrlWdlktg~~v~tL~f~s-~V~sV~~s~--~~LaV~~--~~~I~iwD~~T~e~-l~tl~t~p~p~~~~~~~~~~~~~ 246 (787)
++|++||+.+++.+..+.... .+ .+++++ +.|+++. +++|++||+.+++. ...+..+..|
T Consensus 20 ~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~------------- 85 (331)
T 3u4y_A 20 RRISFFSTDTLEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEGQSS------------- 85 (331)
T ss_dssp TEEEEEETTTCCEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEECSSC-------------
T ss_pred CeEEEEeCcccceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecccCCCC-------------
Confidence 689999999999999888754 55 899987 4555544 45899999999887 5555443332
Q ss_pred cceeEEcc--ceEEEecCCceecCcceeccccCCCCCcCCCcCCCCCceeEeeehhhhhhhhcccceeecccccccCCCC
Q 003907 247 YGPMAVGP--RWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDG 324 (787)
Q Consensus 247 ~~~lAlsp--r~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~ 324 (787)
...++++| ++|+ ...
T Consensus 86 ~~~~~~s~dg~~l~-~~~-------------------------------------------------------------- 102 (331)
T 3u4y_A 86 MADVDITPDDQFAV-TVT-------------------------------------------------------------- 102 (331)
T ss_dssp CCCEEECTTSSEEE-ECC--------------------------------------------------------------
T ss_pred ccceEECCCCCEEE-Eec--------------------------------------------------------------
Confidence 11134433 2222 110
Q ss_pred CCCCcccCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCE-EEEEeCCCCc
Q 003907 325 SSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNN-INIFRIMPSC 403 (787)
Q Consensus 325 s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~-IrVWdi~~~~ 403 (787)
.....+.|.+||+.+++.+..+..+.. ..+++|+|||++|++++.++.. |.+|++...
T Consensus 103 -------------------~~~~~~~i~v~d~~~~~~~~~~~~~~~-~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~- 161 (331)
T 3u4y_A 103 -------------------GLNHPFNMQSYSFLKNKFISTIPIPYD-AVGIAISPNGNGLILIDRSSANTVRRFKIDAD- 161 (331)
T ss_dssp -------------------CSSSSCEEEEEETTTTEEEEEEECCTT-EEEEEECTTSSCEEEEEETTTTEEEEEEECTT-
T ss_pred -------------------CCCCcccEEEEECCCCCeEEEEECCCC-ccceEECCCCCEEEEEecCCCceEEEEEECCC-
Confidence 001124899999999998888876544 5899999999977666655455 999998541
Q ss_pred ccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEe-CCCeEEEEeCCCCC
Q 003907 404 MRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVS-SKGTCHVFVLSPFG 464 (787)
Q Consensus 404 ~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~LAs~S-~dgTVhIwdl~~~g 464 (787)
|. .. ......+.. ...+..++|+|||++|++++ .+++|++||+....
T Consensus 162 -----g~-~~-----~~~~~~~~~---~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~ 209 (331)
T 3u4y_A 162 -----GV-LF-----DTGQEFISG---GTRPFNITFTPDGNFAFVANLIGNSIGILETQNPE 209 (331)
T ss_dssp -----CC-EE-----EEEEEEECS---SSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTT
T ss_pred -----Cc-Ee-----ecCCccccC---CCCccceEECCCCCEEEEEeCCCCeEEEEECCCCc
Confidence 20 00 000111211 23478999999999766555 68999999987543
No 144
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.37 E-value=2.2e-11 Score=143.28 Aligned_cols=99 Identities=13% Similarity=0.193 Sum_probs=71.8
Q ss_pred CCceEEEEECCCCcEEEEeccCCC----CeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEE
Q 003907 347 NAGIVVVKDFVTRAIISQFKAHTS----PISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHL 422 (787)
Q Consensus 347 ~dG~V~IwDl~s~~~v~~~~aH~~----pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l 422 (787)
.++.|.+||+.+++....+..|.. .+..++|+|||++|++++.+|. ++||.+... + . +
T Consensus 310 ~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~-~~l~~~~~~------~----------~-~ 371 (741)
T 2ecf_A 310 KKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRFLDDGSILWSSERTGF-QHLYRIDSK------G----------K-A 371 (741)
T ss_dssp SEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEECTTSCEEEEECTTSS-CEEEEECSS------S----------C-E
T ss_pred CeEEEEEEECCCCceEEEEEcCCCCcCCcCCceEECCCCeEEEEecCCCc-cEEEEEcCC------C----------C-e
Confidence 357899999999988877776654 4578999999999999888775 788876421 2 2 3
Q ss_pred EEEecccccccEEEE-EEccCCCEEEEEe-CCC--eEEEEeCCCCCC
Q 003907 423 YKLHRGITSATIQDI-CFSHYSQWIAIVS-SKG--TCHVFVLSPFGG 465 (787)
Q Consensus 423 ~~l~rG~~~a~I~sl-aFSpDg~~LAs~S-~dg--TVhIwdl~~~gg 465 (787)
..+..+ ...|.++ +|||||++|+.++ .++ +++||+++..++
T Consensus 372 ~~l~~~--~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~g~ 416 (741)
T 2ecf_A 372 AALTHG--NWSVDELLAVDEKAGLAYFRAGIESARESQIYAVPLQGG 416 (741)
T ss_dssp EESCCS--SSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEETTCC
T ss_pred eeeeec--ceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEcCCC
Confidence 334332 2457777 5999999886554 454 899999975444
No 145
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.37 E-value=5e-10 Score=117.98 Aligned_cols=221 Identities=7% Similarity=-0.004 Sum_probs=142.4
Q ss_pred CCe-EEEEEecC-cEEEEEccCCCceeEeeeeccCc---------EEEEEEecCCCCCCCCCCccccCcEEEEEEcCCCC
Q 003907 74 FKQ-VLLLGYQN-GFQVLDVEDASNFNELVSKRDGP---------VSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTN 142 (787)
Q Consensus 74 ~~~-vL~lG~~~-G~qVWdv~~~~~~~ells~~dg~---------V~~v~~lP~P~~~~~~d~F~~srpLLavV~~d~~~ 142 (787)
+++ +++++..+ .+.+||.+. +++...+..+++. +..+.+.|+. + .|++...+
T Consensus 99 dg~~l~v~~~~~~~v~~~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg-----------~--~l~~~~~~--- 161 (353)
T 3vgz_A 99 TTQTLWFGNTVNSAVTAIDAKT-GEVKGRLVLDDRKRTEEVRPLQPRELVADDAT-----------N--TVYISGIG--- 161 (353)
T ss_dssp TTTEEEEEETTTTEEEEEETTT-CCEEEEEESCCCCCCSSCCCCEEEEEEEETTT-----------T--EEEEEEES---
T ss_pred CCCEEEEEecCCCEEEEEeCCC-CeeEEEEecCCCccccccCCCCCceEEECCCC-----------C--EEEEEecC---
Confidence 344 55555544 499999954 5555555544322 5677877641 2 44442211
Q ss_pred CCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeC-CCcEEEEEecC--CeEEEEe-CCeEEEEEC
Q 003907 143 TLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRF-RSSVCMVRCSP--RIVAVGL-ATQIYCFDA 218 (787)
Q Consensus 143 ~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~v~tL~f-~s~V~sV~~s~--~~LaV~~-~~~I~iwD~ 218 (787)
.+++|.+||+++++.+..+.. ...+..+.+++ +.|+++. ++.|++||+
T Consensus 162 ----------------------------~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~ 213 (353)
T 3vgz_A 162 ----------------------------KESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDT 213 (353)
T ss_dssp ----------------------------SSCEEEEEETTTTEEEEEECCCCTTCCCCEEETTTTEEEEECTTSEEEEEET
T ss_pred ----------------------------CCceEEEEcCCCCceEEEecCCCCccceEEECCCCCEEEEEcCCCeEEEEEC
Confidence 125899999999999999984 34577888876 5676654 568999999
Q ss_pred CCCceeEEEEecCC-cccCCCCccccccccceeEEccceEEEecCCceecCcceeccccCCCCCcCCCcCCCCCceeEee
Q 003907 219 LTLENKFSVLTYPV-PQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARY 297 (787)
Q Consensus 219 ~T~e~l~tl~t~p~-p~~~~~~~~~~~~~~~~lAlspr~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~sp~~g~lva~~ 297 (787)
.+++.+..+..... +. .....++++| +. ..+.
T Consensus 214 ~~~~~~~~~~~~~~~~~----------~~~~~~~~s~-------dg---------------------------~~l~--- 246 (353)
T 3vgz_A 214 ADNKILSRKKLLDDGKE----------HFFINISLDT-------AR---------------------------QRAF--- 246 (353)
T ss_dssp TTTEEEEEEECCCSSSC----------CCEEEEEEET-------TT---------------------------TEEE---
T ss_pred CCCeEEEEEEcCCCCCC----------cccceEEECC-------CC---------------------------CEEE---
Confidence 99987777654211 10 0011133322 11 1000
Q ss_pred ehhhhhhhhcccceeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEE
Q 003907 298 AMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCF 377 (787)
Q Consensus 298 a~d~sk~la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~v~~~~aH~~pIsaLaF 377 (787)
.....++.|.+||+.+++.+..+..+. + ..++|
T Consensus 247 ---------------------------------------------~~~~~~~~v~~~d~~~~~~~~~~~~~~-~-~~~~~ 279 (353)
T 3vgz_A 247 ---------------------------------------------ITDSKAAEVLVVDTRNGNILAKVAAPE-S-LAVLF 279 (353)
T ss_dssp ---------------------------------------------EEESSSSEEEEEETTTCCEEEEEECSS-C-CCEEE
T ss_pred ---------------------------------------------EEeCCCCEEEEEECCCCcEEEEEEcCC-C-ceEEE
Confidence 011235789999999999888887654 2 56999
Q ss_pred CCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCC
Q 003907 378 DPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKG 453 (787)
Q Consensus 378 SpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~LAs~S~dg 453 (787)
+|+|++|+.++..+..|.+||+.. + ..+..+..+ ..+.+++|+|||++|+++..++
T Consensus 280 s~dg~~l~v~~~~~~~v~~~d~~~-------~----------~~~~~~~~~---~~~~~~~~s~dg~~l~v~~~~~ 335 (353)
T 3vgz_A 280 NPARNEAYVTHRQAGKVSVIDAKS-------Y----------KVVKTFDTP---THPNSLALSADGKTLYVSVKQK 335 (353)
T ss_dssp ETTTTEEEEEETTTTEEEEEETTT-------T----------EEEEEEECC---SEEEEEEECTTSCEEEEEEECC
T ss_pred CCCCCEEEEEECCCCeEEEEECCC-------C----------eEEEEEecC---CCCCeEEEcCCCCEEEEEEccc
Confidence 999997777765566799999854 2 344444432 3579999999999888877664
No 146
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.32 E-value=3.5e-11 Score=138.20 Aligned_cols=91 Identities=9% Similarity=0.062 Sum_probs=69.7
Q ss_pred ceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCC-EEEEEeCCCCcccCCCCCCccccCCcceEEEEEec
Q 003907 349 GIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGN-NINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHR 427 (787)
Q Consensus 349 G~V~IwDl~s~~~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~-~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~r 427 (787)
+.|.+||+.+++.. .+..|...+..++|||||++||+++.+|. .|.+||+.. | ... +..
T Consensus 175 ~~i~~~d~~~g~~~-~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~-------~----------~~~--~~~ 234 (582)
T 3o4h_A 175 VSLFTSNLSSGGLR-VFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRD-------G----------SVE--DLE 234 (582)
T ss_dssp EEEEEEETTTCCCE-EECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTT-------C----------CEE--ECC
T ss_pred eEEEEEcCCCCCce-EeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCC-------C----------cEE--Ecc
Confidence 46899999888754 77889999999999999999997776552 589999853 2 122 222
Q ss_pred ccccccEEEEE--------EccCCCEEEEEeCCCeEEEEeC
Q 003907 428 GITSATIQDIC--------FSHYSQWIAIVSSKGTCHVFVL 460 (787)
Q Consensus 428 G~~~a~I~sla--------FSpDg~~LAs~S~dgTVhIwdl 460 (787)
+. ...+.+++ |||||+++++++.|++++||++
T Consensus 235 ~~-~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~ 274 (582)
T 3o4h_A 235 LP-SKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID 274 (582)
T ss_dssp CS-CSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET
T ss_pred CC-CcChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE
Confidence 22 22344455 9999999999999999999999
No 147
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.32 E-value=1.1e-10 Score=144.10 Aligned_cols=261 Identities=8% Similarity=-0.035 Sum_probs=162.1
Q ss_pred eEEEEEecCc-EEEEEccCCCceeEeeeeccCcEEEEEEecCCCCCCCCCCccccCcEEEEEEcCCCCCCCCCCCcCCCC
Q 003907 76 QVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLG 154 (787)
Q Consensus 76 ~vL~lG~~~G-~qVWdv~~~~~~~ells~~dg~V~~v~~lP~P~~~~~~d~F~~srpLLavV~~d~~~~~~~~~~~~~~~ 154 (787)
+++.++..+| ++||+++..+...+.+..+.+ +..+.+.|+. + .|+...
T Consensus 215 ~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~~-~~~~~~SpDG-----------~--~la~~~----------------- 263 (1045)
T 1k32_A 215 RIYFITDIDGFGQIYSTDLDGKDLRKHTSFTD-YYPRHLNTDG-----------R--RILFSK----------------- 263 (1045)
T ss_dssp EEEEEECTTSSCEEEEEETTSCSCEECCCCCS-SCEEEEEESS-----------S--CEEEEE-----------------
T ss_pred EEEEEEeccCceEEEEEeCCCCcceEecCCCC-cceeeEcCCC-----------C--EEEEEe-----------------
Confidence 5666776655 899998765544455544443 4455777642 2 454421
Q ss_pred CcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCC------------CcEEEEEec-C--CeEEEEeCCeEEEEECC
Q 003907 155 GVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFR------------SSVCMVRCS-P--RIVAVGLATQIYCFDAL 219 (787)
Q Consensus 155 ~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~v~tL~f~------------s~V~sV~~s-~--~~LaV~~~~~I~iwD~~ 219 (787)
.+.|.+||+..++.. .+... ..|.+++++ + +.|+++....|++||+.
T Consensus 264 -----------------~~~i~~~d~~~~~l~-~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~~~~i~~~~~~ 325 (1045)
T 1k32_A 264 -----------------GGSIYIFNPDTEKIE-KIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVSRGQAFIQDVS 325 (1045)
T ss_dssp -----------------TTEEEEECTTTCCEE-ECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEETTEEEEECTT
T ss_pred -----------------CCEEEEecCCceEee-eeccCcccccccccccccccceeeecCCCCCEEEEEEcCEEEEEcCC
Confidence 147999999555443 55432 258899999 7 67888778899999998
Q ss_pred CCceeEEEEecCCcccCCCCccccccccceeEEc-cceEEEecCCceecCcceeccccCCCCCcCCCcCCCCCceeEeee
Q 003907 220 TLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVG-PRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYA 298 (787)
Q Consensus 220 T~e~l~tl~t~p~p~~~~~~~~~~~~~~~~lAls-pr~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~sp~~g~lva~~a 298 (787)
+++.. .+..++.. ....++++ .++|+|++.+..+++ .++.-+ +
T Consensus 326 ~~~~~-~~~~~~~~------------~~~~~~~sdg~~l~~~s~~~~l~~----~~d~~~------------~------- 369 (1045)
T 1k32_A 326 GTYVL-KVPEPLRI------------RYVRRGGDTKVAFIHGTREGDFLG----IYDYRT------------G------- 369 (1045)
T ss_dssp SSBEE-ECSCCSCE------------EEEEECSSSEEEEEEEETTEEEEE----EEETTT------------C-------
T ss_pred CCceE-EccCCCcc------------eEEeeeEcCCCeEEEEECCCceEE----EEECCC------------C-------
Confidence 87633 23222210 01112222 256666654311110 011000 0
Q ss_pred hhhhhhhhcccceeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEEC
Q 003907 299 MEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFD 378 (787)
Q Consensus 299 ~d~sk~la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~v~~~~aH~~pIsaLaFS 378 (787)
..+.+.. .........++++++. ++.+..++.|++||+.+++....+..|...|.+++||
T Consensus 370 ----------~~~~l~~------~~~~~~~~~~SpDG~~----la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~S 429 (1045)
T 1k32_A 370 ----------KAEKFEE------NLGNVFAMGVDRNGKF----AVVANDRFEIMTVDLETGKPTVIERSREAMITDFTIS 429 (1045)
T ss_dssp ----------CEEECCC------CCCSEEEEEECTTSSE----EEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEEC
T ss_pred ----------CceEecC------CccceeeeEECCCCCE----EEEECCCCeEEEEECCCCceEEeccCCCCCccceEEC
Confidence 0001100 0011122334444443 3455678899999999999888888999999999999
Q ss_pred CCCCEEEEEEcCC---------CEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEE
Q 003907 379 PSGTLLVTASVYG---------NNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIV 449 (787)
Q Consensus 379 pdG~lLATaS~dG---------~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~LAs~ 449 (787)
|||++||+++.++ ..|++||+.. + .+..+.. +...+.+++|||||++|+.+
T Consensus 430 pDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~-------g-----------~~~~l~~--~~~~~~~~~~spdG~~l~~~ 489 (1045)
T 1k32_A 430 DNSRFIAYGFPLKHGETDGYVMQAIHVYDMEG-------R-----------KIFAATT--ENSHDYAPAFDADSKNLYYL 489 (1045)
T ss_dssp TTSCEEEEEEEECSSTTCSCCEEEEEEEETTT-------T-----------EEEECSC--SSSBEEEEEECTTSCEEEEE
T ss_pred CCCCeEEEEecCccccccCCCCCeEEEEECCC-------C-----------cEEEeeC--CCcccCCceEcCCCCEEEEE
Confidence 9999999988744 4799999853 2 2334432 23457889999999999999
Q ss_pred eCCCeEEEEeCC
Q 003907 450 SSKGTCHVFVLS 461 (787)
Q Consensus 450 S~dgTVhIwdl~ 461 (787)
+.++...+|+..
T Consensus 490 s~~~~~~~~~~~ 501 (1045)
T 1k32_A 490 SYRSLDPSPDRV 501 (1045)
T ss_dssp ESCCCCCEECSS
T ss_pred ecccCCcCcchh
Confidence 999999999865
No 148
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.32 E-value=2.3e-10 Score=123.75 Aligned_cols=78 Identities=17% Similarity=0.237 Sum_probs=53.6
Q ss_pred CeEEEE-ECCCCCEEEEEEcCCC-----EEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEcc---
Q 003907 371 PISALC-FDPSGTLLVTASVYGN-----NINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSH--- 441 (787)
Q Consensus 371 pIsaLa-FSpdG~lLATaS~dG~-----~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSp--- 441 (787)
.+..++ |+|||++|++++..+. .|+||++... |. ...+..+... ....+..++|+|
T Consensus 255 ~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~------g~--------~~~~~~~~~~-~~~~~~~~a~sp~~~ 319 (365)
T 1jof_A 255 YRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDC------GS--------IEKQLFLSPT-PTSGGHSNAVSPCPW 319 (365)
T ss_dssp EEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTT------SC--------EEEEEEEEEC-SSCCTTCCCEEECTT
T ss_pred ccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCC------CC--------EEEeeeeeec-CCCCcccceecCCCc
Confidence 478999 9999999988776443 7999998421 21 0111111111 112356799999
Q ss_pred CCCEEEEEeCC-CeEEEEeCCCC
Q 003907 442 YSQWIAIVSSK-GTCHVFVLSPF 463 (787)
Q Consensus 442 Dg~~LAs~S~d-gTVhIwdl~~~ 463 (787)
||++|++++.+ ++|.||+++..
T Consensus 320 dg~~l~v~~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 320 SDEWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp CTTEEEEECSSSCEEEEEEEETT
T ss_pred CCCEEEEEEcCCCeEEEEEEchh
Confidence 89999999865 89999998753
No 149
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.31 E-value=1.1e-09 Score=116.33 Aligned_cols=103 Identities=17% Similarity=0.179 Sum_probs=67.8
Q ss_pred CCceEEEEECC-CCcEE--EEeccCC-CCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEE
Q 003907 347 NAGIVVVKDFV-TRAII--SQFKAHT-SPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHL 422 (787)
Q Consensus 347 ~dG~V~IwDl~-s~~~v--~~~~aH~-~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l 422 (787)
.++.|.+||+. +++.. ..+..+. .....++|+|||++|+.++..+..|++|++... .| ....+
T Consensus 160 ~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~-----~g--------~~~~~ 226 (347)
T 3hfq_A 160 GSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQ-----TG--------AFTQL 226 (347)
T ss_dssp TTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETT-----TT--------EEEEE
T ss_pred CCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCC-----CC--------ceEEe
Confidence 45689999988 45432 2233332 357789999999988887766778999998531 01 01122
Q ss_pred EEEecccc----cccEEEEEEccCCCEEE-EEeCCCeEEEEeCCC
Q 003907 423 YKLHRGIT----SATIQDICFSHYSQWIA-IVSSKGTCHVFVLSP 462 (787)
Q Consensus 423 ~~l~rG~~----~a~I~slaFSpDg~~LA-s~S~dgTVhIwdl~~ 462 (787)
..+..... ...+..++|||||++|+ +...+++|.+|++..
T Consensus 227 ~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~ 271 (347)
T 3hfq_A 227 GIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTA 271 (347)
T ss_dssp EEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECG
T ss_pred eeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECC
Confidence 22221111 03488999999999885 555689999999974
No 150
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.31 E-value=1.8e-09 Score=115.59 Aligned_cols=104 Identities=14% Similarity=0.141 Sum_probs=68.2
Q ss_pred CCceEEEEECCCCc-------E------EEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCcc
Q 003907 347 NAGIVVVKDFVTRA-------I------ISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKY 413 (787)
Q Consensus 347 ~dG~V~IwDl~s~~-------~------v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~ 413 (787)
.++.|.+|++.... . ......+......++|+|||++|+.++..+..|.+||+.. |
T Consensus 175 ~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~-------g---- 243 (361)
T 3scy_A 175 GTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYAD-------G---- 243 (361)
T ss_dssp TTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEET-------T----
T ss_pred CCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecC-------C----
Confidence 35678888776433 1 1112233455789999999999988886566799999853 2
Q ss_pred ccCCcceEEEEEecccc-cccEEEEEEccCCCEEEEEeCC--CeEEEEeCCCCCC
Q 003907 414 DWNSSHVHLYKLHRGIT-SATIQDICFSHYSQWIAIVSSK--GTCHVFVLSPFGG 465 (787)
Q Consensus 414 ~~~~s~~~l~~l~rG~~-~a~I~slaFSpDg~~LAs~S~d--gTVhIwdl~~~gg 465 (787)
....+..+..... .....+++|||||++|+++..+ ++|.||+++...+
T Consensus 244 ----~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g 294 (361)
T 3scy_A 244 ----MLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNG 294 (361)
T ss_dssp ----EEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTC
T ss_pred ----ceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCC
Confidence 0122333322111 1236799999999999777654 8999999975433
No 151
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.27 E-value=1.6e-10 Score=133.33 Aligned_cols=181 Identities=9% Similarity=-0.022 Sum_probs=123.9
Q ss_pred CEEEEEECCCCeEEEEEeCCCcEEEEEecC--CeEEEE-eCCeEEEEEC--CCCceeEEEEecCCcccCCCCcccccccc
Q 003907 173 TAVRFYSFQSHCYEHVLRFRSSVCMVRCSP--RIVAVG-LATQIYCFDA--LTLENKFSVLTYPVPQLAGQGAVGINVGY 247 (787)
Q Consensus 173 ~tVrlWdlktg~~v~tL~f~s~V~sV~~s~--~~LaV~-~~~~I~iwD~--~T~e~l~tl~t~p~p~~~~~~~~~~~~~~ 247 (787)
++|.+||..+++++.++.....+..+++++ ++|+++ .++.|++||+ .+++.+.++.....
T Consensus 159 ~~V~v~D~~t~~~~~~i~~g~~~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~~g~~--------------- 223 (543)
T 1nir_A 159 GQIALVDGDSKKIVKVIDTGYAVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIE--------------- 223 (543)
T ss_dssp TEEEEEETTTCCEEEEEECSTTEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSE---------------
T ss_pred CeEEEEECCCceEEEEEecCcccceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEecCCC---------------
Confidence 689999999999999998655699999988 677765 4678999999 88887777753211
Q ss_pred ceeEEccceEEEecCCceecCcceeccccCCCCCcCCCcCCCCCceeEeeehhhhhhhhcccceeecccccccCCCCCCC
Q 003907 248 GPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSS 327 (787)
Q Consensus 248 ~~lAlspr~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~ 327 (787)
|+.+|+..... +++..+++
T Consensus 224 ------p~~va~sp~~~-----------------------~dg~~l~v-------------------------------- 242 (543)
T 1nir_A 224 ------ARSVESSKFKG-----------------------YEDRYTIA-------------------------------- 242 (543)
T ss_dssp ------EEEEEECCSTT-----------------------CTTTEEEE--------------------------------
T ss_pred ------cceEEeCCCcC-----------------------CCCCEEEE--------------------------------
Confidence 23344432000 00010000
Q ss_pred CcccCCccccccccccccCCCceEEEEECCCCcEEEEeccC----------CC-CeEEEEECCCCCEEEEEEcCCCEEEE
Q 003907 328 PVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAH----------TS-PISALCFDPSGTLLVTASVYGNNINI 396 (787)
Q Consensus 328 ~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~v~~~~aH----------~~-pIsaLaFSpdG~lLATaS~dG~~IrV 396 (787)
....+++|.|||..+++++..+..+ .. .+.++.|+|++..++.+..++..|.+
T Consensus 243 ----------------~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~v 306 (543)
T 1nir_A 243 ----------------GAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLL 306 (543)
T ss_dssp ----------------EEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEE
T ss_pred ----------------EEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEE
Confidence 0113678999999999999888752 23 78999999987766555555567999
Q ss_pred EeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEe-CCCeEEEEeCCCC
Q 003907 397 FRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVS-SKGTCHVFVLSPF 463 (787)
Q Consensus 397 Wdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~LAs~S-~dgTVhIwdl~~~ 463 (787)
||+... . ...+..+..+ ..+.+++|+|||++|++++ .+++|.|||+...
T Consensus 307 vd~~~~------~---------~l~~~~i~~~---~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg 356 (543)
T 1nir_A 307 VNYKDI------D---------NLTVTSIGAA---PFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDR 356 (543)
T ss_dssp EECTTS------S---------SCEEEEEECC---SSCCCEEECTTSCEEEEEEGGGTEEEEEETTTT
T ss_pred EEecCC------C---------cceeEEeccC---cCccCceECCCCCEEEEEecCCCeEEEEECCCC
Confidence 998541 0 0122233222 3477899999999876554 6899999999864
No 152
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.27 E-value=1e-10 Score=144.36 Aligned_cols=268 Identities=13% Similarity=0.019 Sum_probs=153.2
Q ss_pred EEEEEccCCCceeEeeeeccCcEEEEEEecCCCCCCCCCCccccCcEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCC
Q 003907 86 FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQS 165 (787)
Q Consensus 86 ~qVWdv~~~~~~~ells~~dg~V~~v~~lP~P~~~~~~d~F~~srpLLavV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~ 165 (787)
.+||.....+++..+ ..|++.|..+.+.|+ .+++++..
T Consensus 185 ~~lw~~~~~~~~~~l-~~~~~~v~~~~~s~d---------------~l~~~~~~-------------------------- 222 (1045)
T 1k32_A 185 GKIWIEVNSGAFKKI-VDMSTHVSSPVIVGH---------------RIYFITDI-------------------------- 222 (1045)
T ss_dssp CEEEEEEETTEEEEE-ECCSSCCEEEEEETT---------------EEEEEECT--------------------------
T ss_pred CCEEEECCCCCeEEC-cCCCCcccceEEeCC---------------EEEEEEec--------------------------
Confidence 577765444554444 788899999888752 23333321
Q ss_pred CCCCCCCCEEEEEECCC-CeEEEEEeCCCcEEEEEecC--CeEEEEeCCeEEEEECCCCceeEEEEecCCcccCCCCccc
Q 003907 166 GNCVNSPTAVRFYSFQS-HCYEHVLRFRSSVCMVRCSP--RIVAVGLATQIYCFDALTLENKFSVLTYPVPQLAGQGAVG 242 (787)
Q Consensus 166 ~~~~~~p~tVrlWdlkt-g~~v~tL~f~s~V~sV~~s~--~~LaV~~~~~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~ 242 (787)
+++++||.+.. +.....+..+..+..+.+++ +.|+.+.+..|++||+.+. .+..+..+..... .....
T Consensus 223 ------dg~~~l~~~~~~g~~~~~l~~~~~~~~~~~SpDG~~la~~~~~~i~~~d~~~~-~l~~l~~~~~~~~--~~~~~ 293 (1045)
T 1k32_A 223 ------DGFGQIYSTDLDGKDLRKHTSFTDYYPRHLNTDGRRILFSKGGSIYIFNPDTE-KIEKIEIGDLESP--EDRII 293 (1045)
T ss_dssp ------TSSCEEEEEETTSCSCEECCCCCSSCEEEEEESSSCEEEEETTEEEEECTTTC-CEEECCCCCCCBC--CSEEE
T ss_pred ------cCceEEEEEeCCCCcceEecCCCCcceeeEcCCCCEEEEEeCCEEEEecCCce-EeeeeccCccccc--ccccc
Confidence 13456676532 33445555444455556655 7788888889999999444 3334433211000 00000
Q ss_pred cccccceeEEc-c--ceEEEecCCceecCcceeccccCCCCCcCCCcCCCCCceeEeeehhhhhhhhcccceeecccccc
Q 003907 243 INVGYGPMAVG-P--RWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQE 319 (787)
Q Consensus 243 ~~~~~~~lAls-p--r~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~ 319 (787)
.......++++ | ++||++....+. .++.-. +.. +.+..+
T Consensus 294 ~~~~v~~~~~S~pdG~~la~~~~~~i~------~~~~~~------------~~~-----------------~~~~~~--- 335 (1045)
T 1k32_A 294 SIPSKFAEDFSPLDGDLIAFVSRGQAF------IQDVSG------------TYV-----------------LKVPEP--- 335 (1045)
T ss_dssp ECGGGGEEEEEECGGGCEEEEETTEEE------EECTTS------------SBE-----------------EECSCC---
T ss_pred cccccceeeecCCCCCEEEEEEcCEEE------EEcCCC------------Cce-----------------EEccCC---
Confidence 00023568899 8 788887643111 111100 000 000000
Q ss_pred cCCCC-CCCCcccCCccccccccccccCCCceEE-EEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEE
Q 003907 320 LLPDG-SSSPVSPNSVWKVGRHAGADMDNAGIVV-VKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIF 397 (787)
Q Consensus 320 l~p~~-s~~~~s~s~~~~~~~~~~~s~~~dG~V~-IwDl~s~~~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVW 397 (787)
.+ ......++ +++ .++....++.+. +||+.+++.. .+..|...+.+++|||||++||+++.++ .|++|
T Consensus 336 ---~~~~~~~~~~s-dg~----~l~~~s~~~~l~~~~d~~~~~~~-~l~~~~~~~~~~~~SpDG~~la~~~~~~-~v~~~ 405 (1045)
T 1k32_A 336 ---LRIRYVRRGGD-TKV----AFIHGTREGDFLGIYDYRTGKAE-KFEENLGNVFAMGVDRNGKFAVVANDRF-EIMTV 405 (1045)
T ss_dssp ---SCEEEEEECSS-SEE----EEEEEETTEEEEEEEETTTCCEE-ECCCCCCSEEEEEECTTSSEEEEEETTS-EEEEE
T ss_pred ---CcceEEeeeEc-CCC----eEEEEECCCceEEEEECCCCCce-EecCCccceeeeEECCCCCEEEEECCCC-eEEEE
Confidence 00 00111222 222 122233366788 8999887654 4458889999999999999999999865 59999
Q ss_pred eCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCC----------eEEEEeCCCCCCcc
Q 003907 398 RIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKG----------TCHVFVLSPFGGDS 467 (787)
Q Consensus 398 di~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~LAs~S~dg----------TVhIwdl~~~gg~~ 467 (787)
|+.. | ... .+..+ +...|.+++|||||++|++++.++ +|++||+.... ..
T Consensus 406 d~~t-------g----------~~~-~~~~~-~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~-~~ 465 (1045)
T 1k32_A 406 DLET-------G----------KPT-VIERS-REAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK-IF 465 (1045)
T ss_dssp ETTT-------C----------CEE-EEEEC-SSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE-EE
T ss_pred ECCC-------C----------ceE-EeccC-CCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCc-EE
Confidence 9854 2 122 22223 234588999999999999988754 99999997532 33
Q ss_pred ccccc
Q 003907 468 GFQTL 472 (787)
Q Consensus 468 ~~~~H 472 (787)
.+..|
T Consensus 466 ~l~~~ 470 (1045)
T 1k32_A 466 AATTE 470 (1045)
T ss_dssp ECSCS
T ss_pred EeeCC
Confidence 44444
No 153
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.26 E-value=9.2e-10 Score=128.87 Aligned_cols=96 Identities=18% Similarity=0.123 Sum_probs=67.2
Q ss_pred CCceEEEEECC-CCcEEEEeccCCCCeEE-EEECCCCCEEEEEEcCCC----EEEEEeCCCCcccCCCCCCccccCCcce
Q 003907 347 NAGIVVVKDFV-TRAIISQFKAHTSPISA-LCFDPSGTLLVTASVYGN----NINIFRIMPSCMRSGSGNHKYDWNSSHV 420 (787)
Q Consensus 347 ~dG~V~IwDl~-s~~~v~~~~aH~~pIsa-LaFSpdG~lLATaS~dG~----~IrVWdi~~~~~~~~~g~~~~~~~~s~~ 420 (787)
.+|.++||++. +++.+..+..|...+.. ++|+|||+.|+.++.++. .|..||+.. +
T Consensus 331 ~~g~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~-------~----------- 392 (706)
T 2z3z_A 331 RDGWNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKG-------G----------- 392 (706)
T ss_dssp TTSSCEEEEEETTSCEEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTC-------C-----------
T ss_pred cCCccEEEEEECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCC-------C-----------
Confidence 45667777765 56778888889888887 899999998877766543 455555532 1
Q ss_pred EEEEEecccccccEEEEEEccCCCEEEEEeCC----CeEEEEeCCCC
Q 003907 421 HLYKLHRGITSATIQDICFSHYSQWIAIVSSK----GTCHVFVLSPF 463 (787)
Q Consensus 421 ~l~~l~rG~~~a~I~slaFSpDg~~LAs~S~d----gTVhIwdl~~~ 463 (787)
.+..+. +...+.+++|||||++|+.+..+ +++++||+...
T Consensus 393 ~~~~l~---~~~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~~~~ 436 (706)
T 2z3z_A 393 KTKDLT---PESGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTNIGKG 436 (706)
T ss_dssp CCEESC---CSSSEEEEEECTTSSEEEEEEECSSCSCEEEEEESSSC
T ss_pred Cceecc---CCCceEEEEECCCCCEEEEEecCCCCCcEEEEEECCCC
Confidence 112221 22358899999999999877544 56999998653
No 154
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.26 E-value=5.3e-10 Score=116.82 Aligned_cols=103 Identities=17% Similarity=0.256 Sum_probs=70.6
Q ss_pred CCceEEEEEC---CCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEE
Q 003907 347 NAGIVVVKDF---VTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLY 423 (787)
Q Consensus 347 ~dG~V~IwDl---~s~~~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~ 423 (787)
.++.|.+||+ ...+.+..+..+ ..+.+++|+|+|++|++++..+..|++||+... + ....+.
T Consensus 104 ~~~~i~~~d~~~~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~------~--------~~~~~~ 168 (343)
T 1ri6_A 104 NAGNVSVTRLEDGLPVGVVDVVEGL-DGCHSANISPDNRTLWVPALKQDRICLFTVSDD------G--------HLVAQD 168 (343)
T ss_dssp TTTEEEEEEEETTEEEEEEEEECCC-TTBCCCEECTTSSEEEEEEGGGTEEEEEEECTT------S--------CEEEEE
T ss_pred CCCeEEEEECCCCccccccccccCC-CCceEEEECCCCCEEEEecCCCCEEEEEEecCC------C--------ceeeec
Confidence 3678999998 444455555554 458899999999999888833456999998531 1 011221
Q ss_pred --EEecccccccEEEEEEccCCCEEEEEe-CCCeEEEEeCCCCCC
Q 003907 424 --KLHRGITSATIQDICFSHYSQWIAIVS-SKGTCHVFVLSPFGG 465 (787)
Q Consensus 424 --~l~rG~~~a~I~slaFSpDg~~LAs~S-~dgTVhIwdl~~~gg 465 (787)
.+.. .....+.+++|+|||++|++++ .++++++|+++...+
T Consensus 169 ~~~~~~-~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g 212 (343)
T 1ri6_A 169 PAEVTT-VEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHG 212 (343)
T ss_dssp EEEEEC-STTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTS
T ss_pred cccccc-CCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCC
Confidence 2221 1223588999999999876665 789999999976444
No 155
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.25 E-value=1.6e-10 Score=135.39 Aligned_cols=103 Identities=12% Similarity=0.225 Sum_probs=65.3
Q ss_pred CCceEEEEECCCCcEEEEecc-CCCCeE----EEEECCCCCEEEEE-EcCCC------EEEEEeCCCCcccCCCCCCccc
Q 003907 347 NAGIVVVKDFVTRAIISQFKA-HTSPIS----ALCFDPSGTLLVTA-SVYGN------NINIFRIMPSCMRSGSGNHKYD 414 (787)
Q Consensus 347 ~dG~V~IwDl~s~~~v~~~~a-H~~pIs----aLaFSpdG~lLATa-S~dG~------~IrVWdi~~~~~~~~~g~~~~~ 414 (787)
.+..|.+||+.+++....+.. |...+. .++|||||+.|+.+ +.++. .|.+||+... +.
T Consensus 278 ~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~------~~---- 347 (723)
T 1xfd_A 278 NVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPN------SS---- 347 (723)
T ss_dssp CEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCC------SS----
T ss_pred CeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCC------CC----
Confidence 456899999999987776654 444443 78999999988865 44343 3555662110 10
Q ss_pred cCCcceEEEEEecccccccEEE-EEEccCCCEEEEEeCC---CeEEEEeCCCCCC
Q 003907 415 WNSSHVHLYKLHRGITSATIQD-ICFSHYSQWIAIVSSK---GTCHVFVLSPFGG 465 (787)
Q Consensus 415 ~~~s~~~l~~l~rG~~~a~I~s-laFSpDg~~LAs~S~d---gTVhIwdl~~~gg 465 (787)
..+...+..| ...+.. ++|||||++|+..+.+ ++++||+++..++
T Consensus 348 ----~~~~~~l~~~--~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~~~~ 396 (723)
T 1xfd_A 348 ----NDNIQSITSG--DWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGN 396 (723)
T ss_dssp ----SCCCCBSCCS--SSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTT
T ss_pred ----ccceeEeecC--CeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEeCCCC
Confidence 0001122222 123444 6999999999877665 8999999986543
No 156
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.24 E-value=7.6e-10 Score=115.34 Aligned_cols=217 Identities=11% Similarity=0.015 Sum_probs=131.6
Q ss_pred CEEEEEECCCCeEEEEEeCCC---cEEEEEecC--CeEEEEe--CCeEEEEECCCCceeEEEEecC-CcccCCCCccccc
Q 003907 173 TAVRFYSFQSHCYEHVLRFRS---SVCMVRCSP--RIVAVGL--ATQIYCFDALTLENKFSVLTYP-VPQLAGQGAVGIN 244 (787)
Q Consensus 173 ~tVrlWdlktg~~v~tL~f~s---~V~sV~~s~--~~LaV~~--~~~I~iwD~~T~e~l~tl~t~p-~p~~~~~~~~~~~ 244 (787)
++|++||+.+++.+.++.... .+..+++++ +.|+++. +++|++||+.+++.+.++.... .. . +
T Consensus 11 ~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~----~---~-- 81 (337)
T 1pby_B 11 DKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEE----R---V-- 81 (337)
T ss_dssp TEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTE----E---E--
T ss_pred CeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCccc----c---c--
Confidence 689999999999999998776 688899987 4565544 3589999999999877776321 10 0 0
Q ss_pred cccceeEEcc--ceEEEecCCceec------Ccce-eccccCCCCCcCCCcCCCCCceeEeeehhhhhhhhcccceeecc
Q 003907 245 VGYGPMAVGP--RWLAYASNTLLLS------NSGR-LSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSK 315 (787)
Q Consensus 245 ~~~~~lAlsp--r~LAyas~~~~l~------~~g~-~s~q~lt~~~~s~s~sp~~g~lva~~a~d~sk~la~G~~ktls~ 315 (787)
.....++++| ++|+++....-.. ..+. ..++.-+ +... +.+.
T Consensus 82 ~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~------------~~~~----------------~~~~- 132 (337)
T 1pby_B 82 KSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAET------------LSRR----------------KAFE- 132 (337)
T ss_dssp ECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTT------------TEEE----------------EEEE-
T ss_pred ccccceEECCCCCEEEEEecccccccccccccCceEEEEECCC------------CcEE----------------EEEe-
Confidence 0123577887 5777663110000 0000 0111100 1100 0100
Q ss_pred cccccCCCCCCCCcccCCccccccccccccCCCceEEEEECCCCcEEEEeccCC--CCeEEEEECCCCCEEEEEEcCCCE
Q 003907 316 YCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHT--SPISALCFDPSGTLLVTASVYGNN 393 (787)
Q Consensus 316 ~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~v~~~~aH~--~pIsaLaFSpdG~lLATaS~dG~~ 393 (787)
.......+.++++.+... .+ ++.|.+||+.+++.+..+..+. .++ +|+|+|++|+.++..+..
T Consensus 133 ------~~~~~~~~~~s~dg~~l~----~~--~~~i~~~d~~~~~~~~~~~~~~~~~~~---~~s~dg~~l~~~~~~~~~ 197 (337)
T 1pby_B 133 ------APRQITMLAWARDGSKLY----GL--GRDLHVMDPEAGTLVEDKPIQSWEAET---YAQPDVLAVWNQHESSGV 197 (337)
T ss_dssp ------CCSSCCCEEECTTSSCEE----EE--SSSEEEEETTTTEEEEEECSTTTTTTT---BCCCBCCCCCCCCTTTTE
T ss_pred ------CCCCcceeEECCCCCEEE----Ee--CCeEEEEECCCCcEeeeeeccccCCCc---eeCCCccEEeeeccCCCc
Confidence 011122233444444322 22 5789999999999888887654 443 899999988766654543
Q ss_pred -----------------------EEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEe
Q 003907 394 -----------------------INIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVS 450 (787)
Q Consensus 394 -----------------------IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~LAs~S 450 (787)
|.+||+.. +. .....+. .....+.+++|+|||++|+++
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~-------~~---------~~~~~~~--~~~~~~~~~~~s~dg~~l~~~- 258 (337)
T 1pby_B 198 MATPFYTARKDIDPADPTAYRTGLLTMDLET-------GE---------MAMREVR--IMDVFYFSTAVNPAKTRAFGA- 258 (337)
T ss_dssp EEEEEEEEBTTSCTTSGGGEEEEEEEEETTT-------CC---------EEEEEEE--ECSSCEEEEEECTTSSEEEEE-
T ss_pred eeeeeeccccccccccccccccceEEEeCCC-------CC---------ceEeecC--CCCCceeeEEECCCCCEEEEe-
Confidence 57788743 20 1122222 122357899999999999988
Q ss_pred CCCeEEEEeCCC
Q 003907 451 SKGTCHVFVLSP 462 (787)
Q Consensus 451 ~dgTVhIwdl~~ 462 (787)
+++|++||+..
T Consensus 259 -~~~v~~~d~~~ 269 (337)
T 1pby_B 259 -YNVLESFDLEK 269 (337)
T ss_dssp -ESEEEEEETTT
T ss_pred -CCeEEEEECCC
Confidence 68999999864
No 157
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.24 E-value=3.8e-11 Score=141.13 Aligned_cols=285 Identities=11% Similarity=0.044 Sum_probs=156.2
Q ss_pred CeEEEEEecCcEEEEEccCCCceeEeeeeccC---cEEEEEEecCCCCCCCCCCccccCcEEEEEEcCCCCCCCCCCCcC
Q 003907 75 KQVLLLGYQNGFQVLDVEDASNFNELVSKRDG---PVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRS 151 (787)
Q Consensus 75 ~~vL~lG~~~G~qVWdv~~~~~~~ells~~dg---~V~~v~~lP~P~~~~~~d~F~~srpLLavV~~d~~~~~~~~~~~~ 151 (787)
++++..+.++.+++||++ .++...++..+.. .|..++++|+. + .||+.....
T Consensus 27 g~~~~~~~d~~i~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~SpDg-----------~--~la~~~~~~----------- 81 (719)
T 1z68_A 27 QEYLHQSADNNIVLYNIE-TGQSYTILSNRTMKSVNASNYGLSPDR-----------Q--FVYLESDYS----------- 81 (719)
T ss_dssp SEEEEECTTSCEEEEESS-SCCEEEEECHHHHHTTTCSEEEECTTS-----------S--EEEEEEEEE-----------
T ss_pred CeEEEEcCCCCEEEEEcC-CCcEEEEEccccccccceeeEEECCCC-----------C--eEEEEecCc-----------
Confidence 466766665669999995 4667777766543 48899999852 2 666543210
Q ss_pred CCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCCcEEEEEecC--CeEEEEeCCeEEEEECCCCceeEEEEe
Q 003907 152 HLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRSSVCMVRCSP--RIVAVGLATQIYCFDALTLENKFSVLT 229 (787)
Q Consensus 152 ~~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~v~tL~f~s~V~sV~~s~--~~LaV~~~~~I~iwD~~T~e~l~tl~t 229 (787)
+.|. ....++|++||+.+++.+...+....+..++++| +.||.+.+++|++||+.+++... +..
T Consensus 82 -------~~~~------~s~~~~i~~~d~~~g~~~~~~~l~~~~~~~~~SPDG~~la~~~~~~i~~~~~~~g~~~~-l~~ 147 (719)
T 1z68_A 82 -------KLWR------YSYTATYYIYDLSNGEFVRGNELPRPIQYLCWSPVGSKLAYVYQNNIYLKQRPGDPPFQ-ITF 147 (719)
T ss_dssp -------ECSS------SCEEEEEEEEETTTTEECCSSCCCSSBCCEEECSSTTCEEEEETTEEEEESSTTSCCEE-CCC
T ss_pred -------eeEE------eecceEEEEEECCCCccccceecCcccccceECCCCCEEEEEECCeEEEEeCCCCCcEE-Eec
Confidence 1110 0013589999999998743233456788999998 68888888999999999887533 221
Q ss_pred cCCcccCCCCccc-c-----ccccceeEEcc--ceEEEecCCceecCcceeccccCCCCCcCCCcCCCCCceeEeeehhh
Q 003907 230 YPVPQLAGQGAVG-I-----NVGYGPMAVGP--RWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEH 301 (787)
Q Consensus 230 ~p~p~~~~~~~~~-~-----~~~~~~lAlsp--r~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~sp~~g~lva~~a~d~ 301 (787)
.......-.|.+. + ......++++| ++|||+..+.- ............. . . |. +
T Consensus 148 ~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~--~~~~~~~~~~~~~---~-~-~~----~------- 209 (719)
T 1z68_A 148 NGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDT--DIPVIAYSYYGDE---Q-Y-PR----T------- 209 (719)
T ss_dssp CCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECT--TSCEEEEEECCSS---S-S-CE----E-------
T ss_pred CCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCC--CCceEEeeccCCC---C-C-cc----c-------
Confidence 1110000000000 0 00013688998 88998753200 0000000000000 0 0 00 0
Q ss_pred hhhhhcccceeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECCCCcEE--------EEeccCCCCeE
Q 003907 302 SKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAII--------SQFKAHTSPIS 373 (787)
Q Consensus 302 sk~la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~v--------~~~~aH~~pIs 373 (787)
..+ + +|. . ........|.+||+.+++.+ ..+.+|...+.
T Consensus 210 ---------~~~-~-----yp~-------------~-----g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (719)
T 1z68_A 210 ---------INI-P-----YPK-------------A-----GAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFS 256 (719)
T ss_dssp ---------EEE-E-----CCB-------------T-----TSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEE
T ss_pred ---------eee-c-----CCC-------------C-----CCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEE
Confidence 000 0 000 0 01122358999999987642 22456888999
Q ss_pred EEEECCCCCEEEEEEcCC---CEEEEEe----CCCCcccCCCCCCccccCCcceEEEE-EecccccccEE-----EEEEc
Q 003907 374 ALCFDPSGTLLVTASVYG---NNINIFR----IMPSCMRSGSGNHKYDWNSSHVHLYK-LHRGITSATIQ-----DICFS 440 (787)
Q Consensus 374 aLaFSpdG~lLATaS~dG---~~IrVWd----i~~~~~~~~~g~~~~~~~~s~~~l~~-l~rG~~~a~I~-----slaFS 440 (787)
.++|||||+++++....+ ..|.+|| +.. |. ...+.. .+.+ +...|. +++||
T Consensus 257 ~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~-------g~--------~~~~~~~~~~~-~~~~~~~~~~~~~~~s 320 (719)
T 1z68_A 257 WLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQT-------WD--------CPKTQEHIEES-RTGWAGGFFVSTPVFS 320 (719)
T ss_dssp EEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSS-------EE--------CCGGGEEEEEC-SSSCSSSSSCCCCEEC
T ss_pred EeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCC-------Cc--------eEEEEeccccc-CCceEccccCCccEEC
Confidence 999999999888865422 2377788 532 10 011110 0012 122344 78999
Q ss_pred cCCCEEEE--EeCCCeEEEEeCCCCCC
Q 003907 441 HYSQWIAI--VSSKGTCHVFVLSPFGG 465 (787)
Q Consensus 441 pDg~~LAs--~S~dgTVhIwdl~~~gg 465 (787)
|||++|+. +..+|..+||-++..++
T Consensus 321 pdg~~l~~~~~~~~g~~~l~~~~~~~~ 347 (719)
T 1z68_A 321 YDAISYYKIFSDKDGYKHIHYIKDTVE 347 (719)
T ss_dssp TTSSCEEEEEECTTSCEEEEEESSCST
T ss_pred CCCCeEEEEEEccCCceEEEEEECCCC
Confidence 99996654 55667666665544333
No 158
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.21 E-value=3.4e-09 Score=114.56 Aligned_cols=102 Identities=17% Similarity=0.211 Sum_probs=68.2
Q ss_pred CceEEEEECC-CCcE--EEEec--cCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceE-
Q 003907 348 AGIVVVKDFV-TRAI--ISQFK--AHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVH- 421 (787)
Q Consensus 348 dG~V~IwDl~-s~~~--v~~~~--aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~- 421 (787)
++.|.+||+. +++. +..+. .|...+..++|+|||++|++++..+..|.+|++... .|. ...
T Consensus 166 ~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~-----~g~--------~~~~ 232 (365)
T 1jof_A 166 ANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPA-----THM--------PVYT 232 (365)
T ss_dssp TTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTT-----TCC--------EEEE
T ss_pred CCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCC-----CCc--------EEEc
Confidence 3578899987 6654 23343 345678999999999999998876677999987431 020 011
Q ss_pred EEEEec---ccc--cc------cEEEEE-EccCCCEEEEEeCC-C-----eEEEEeCCC
Q 003907 422 LYKLHR---GIT--SA------TIQDIC-FSHYSQWIAIVSSK-G-----TCHVFVLSP 462 (787)
Q Consensus 422 l~~l~r---G~~--~a------~I~sla-FSpDg~~LAs~S~d-g-----TVhIwdl~~ 462 (787)
...+.. +.. .. .+.+++ |||||++|++++.+ + +|.+|+++.
T Consensus 233 ~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~ 291 (365)
T 1jof_A 233 HHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRD 291 (365)
T ss_dssp EEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECT
T ss_pred cceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECC
Confidence 112211 111 11 488999 99999999877643 2 899999974
No 159
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.18 E-value=3.2e-09 Score=113.99 Aligned_cols=96 Identities=14% Similarity=0.101 Sum_probs=59.1
Q ss_pred ceEEEEECCCCcE--EEEeccCCCC---eEEEEECCCCCEEEEEE--------cCCCEEEEEeCCCCcccCCCCCCcccc
Q 003907 349 GIVVVKDFVTRAI--ISQFKAHTSP---ISALCFDPSGTLLVTAS--------VYGNNINIFRIMPSCMRSGSGNHKYDW 415 (787)
Q Consensus 349 G~V~IwDl~s~~~--v~~~~aH~~p---IsaLaFSpdG~lLATaS--------~dG~~IrVWdi~~~~~~~~~g~~~~~~ 415 (787)
+.|.+||+.+++. +..+.++... ...++|+|||+.|+... ..+..|.+||+.. +
T Consensus 264 ~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~-------~------ 330 (388)
T 3pe7_A 264 RFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKN-------G------ 330 (388)
T ss_dssp EEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTT-------T------
T ss_pred ceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccC-------C------
Confidence 4599999998873 3344432111 11237999999988653 2244699999853 2
Q ss_pred CCcceEEEEEecccc---------cccEEEEEEccCCCEEEEEeC-CCeEEEEeCCC
Q 003907 416 NSSHVHLYKLHRGIT---------SATIQDICFSHYSQWIAIVSS-KGTCHVFVLSP 462 (787)
Q Consensus 416 ~~s~~~l~~l~rG~~---------~a~I~slaFSpDg~~LAs~S~-dgTVhIwdl~~ 462 (787)
.+..+..+.. ...+.+++|||||++|+.++. ++..+||.++.
T Consensus 331 -----~~~~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~~~~l 382 (388)
T 3pe7_A 331 -----TQHRVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPALYLATL 382 (388)
T ss_dssp -----EEEEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEEC
T ss_pred -----ceEEeccccCcccccccccccCCCCccCCCCCCEEEEEecCCCceeEEEEEC
Confidence 2333432211 003678999999999987775 68888887764
No 160
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.15 E-value=6.4e-11 Score=132.74 Aligned_cols=98 Identities=13% Similarity=0.273 Sum_probs=80.1
Q ss_pred ccCCCceEEEEECCCC--------c---EEEEeccCCCCeEEEEECCC-CCEEEEEEcCCCEEEEEeCCCCcccCCCCCC
Q 003907 344 DMDNAGIVVVKDFVTR--------A---IISQFKAHTSPISALCFDPS-GTLLVTASVYGNNINIFRIMPSCMRSGSGNH 411 (787)
Q Consensus 344 s~~~dG~V~IwDl~s~--------~---~v~~~~aH~~pIsaLaFSpd-G~lLATaS~dG~~IrVWdi~~~~~~~~~g~~ 411 (787)
++..||.|+|||+.+. + .+..+.+|..+|.+|+|+|+ +.+||+++.||+ |+|||+.. +
T Consensus 113 sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~-v~iwD~~~-------~-- 182 (434)
T 2oit_A 113 SSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGS-IAVLQVTE-------T-- 182 (434)
T ss_dssp ETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSC-EEEEEESS-------S--
T ss_pred ccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCe-EEEEEcCC-------C--
Confidence 5678999999998654 2 25667789999999999998 899999999776 99999954 1
Q ss_pred ccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEeCC
Q 003907 412 KYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLS 461 (787)
Q Consensus 412 ~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~ 461 (787)
..+.... + +...|++++|+|||++|++++.||+|+|||+.
T Consensus 183 --------~~~~~~~-~-~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~ 222 (434)
T 2oit_A 183 --------VKVCATL-P-STVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT 222 (434)
T ss_dssp --------EEEEEEE-C-GGGCEEEEEECTTSSCEEEEETTSCEEEECTT
T ss_pred --------cceeecc-C-CCCceeEEEEcCCCCEEEEEcCCCcEEEEccC
Confidence 2333332 3 34579999999999999999999999999987
No 161
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.14 E-value=5.3e-10 Score=128.30 Aligned_cols=90 Identities=10% Similarity=0.024 Sum_probs=66.0
Q ss_pred EEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCC---CEEEEEeCCCCcccCCCCCCccccCCcceEEEEEec
Q 003907 351 VVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYG---NNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHR 427 (787)
Q Consensus 351 V~IwDl~s~~~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG---~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~r 427 (787)
+.|||+.+++.......+. .+++|||||++||+++.++ ..|.+||+.. | .+..+..
T Consensus 134 ~~l~d~~~g~~~~l~~~~~---~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~-------g-----------~~~~l~~ 192 (582)
T 3o4h_A 134 VALYALDGGGLRELARLPG---FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSS-------G-----------GLRVFDS 192 (582)
T ss_dssp EEEEEEETTEEEEEEEESS---CEEEEEEETTEEEEEEEEETTEEEEEEEETTT-------C-----------CCEEECC
T ss_pred ceEEEccCCcEEEeecCCC---ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCC-------C-----------CceEeec
Confidence 3499998887654444333 7899999999999888751 4589999853 2 1223432
Q ss_pred ccccccEEEEEEccCCCEEEEEeCCC--eEEEEeCCCC
Q 003907 428 GITSATIQDICFSHYSQWIAIVSSKG--TCHVFVLSPF 463 (787)
Q Consensus 428 G~~~a~I~slaFSpDg~~LAs~S~dg--TVhIwdl~~~ 463 (787)
+...+.+++|||||++|+++..++ +|++||++..
T Consensus 193 --~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~ 228 (582)
T 3o4h_A 193 --GEGSFSSASISPGMKVTAGLETAREARLVTVDPRDG 228 (582)
T ss_dssp --SSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTC
T ss_pred --CCCccccceECCCCCEEEEccCCCeeEEEEEcCCCC
Confidence 234689999999999999888888 8889988753
No 162
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.13 E-value=5.8e-09 Score=109.39 Aligned_cols=57 Identities=18% Similarity=0.086 Sum_probs=46.4
Q ss_pred CEEEEEECCCCeEEEEEeCCC--cEEEEEecC--CeEEEEe--CCeEEEEECCCCceeEEEEe
Q 003907 173 TAVRFYSFQSHCYEHVLRFRS--SVCMVRCSP--RIVAVGL--ATQIYCFDALTLENKFSVLT 229 (787)
Q Consensus 173 ~tVrlWdlktg~~v~tL~f~s--~V~sV~~s~--~~LaV~~--~~~I~iwD~~T~e~l~tl~t 229 (787)
++|.+||+++++.+.++.... .+..+++++ +.++++. +++|++||+.+++.+..+..
T Consensus 21 ~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~ 83 (349)
T 1jmx_B 21 NNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANL 83 (349)
T ss_dssp TEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEES
T ss_pred CeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEc
Confidence 689999999999999998776 788888887 4555543 46899999999988777663
No 163
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.06 E-value=4.9e-07 Score=93.22 Aligned_cols=95 Identities=16% Similarity=0.185 Sum_probs=68.7
Q ss_pred CceEEEEECCCCcEEEEeccC--CCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEE
Q 003907 348 AGIVVVKDFVTRAIISQFKAH--TSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKL 425 (787)
Q Consensus 348 dG~V~IwDl~s~~~v~~~~aH--~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l 425 (787)
++.|.+||. +++.+..+..+ ...+..|+|+++|+++++...++..|.+||.. | ..+..+
T Consensus 184 ~~~i~~~~~-~g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~--------g----------~~~~~~ 244 (286)
T 1q7f_A 184 AHCVKVFNY-EGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQD--------G----------QLISAL 244 (286)
T ss_dssp GTEEEEEET-TCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTT--------S----------CEEEEE
T ss_pred CCEEEEEcC-CCCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECCC--------C----------CEEEEE
Confidence 567888987 45566666543 36788999999999998887644369999952 2 244444
Q ss_pred ecccccccEEEEEEccCCCEEEEEeCCCeEEEEeCCC
Q 003907 426 HRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSP 462 (787)
Q Consensus 426 ~rG~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~~ 462 (787)
..+.....+.+|+|+|||+++++ +.+++|+||++..
T Consensus 245 ~~~~~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~~ 280 (286)
T 1q7f_A 245 ESKVKHAQCFDVALMDDGSVVLA-SKDYRLYIYRYVQ 280 (286)
T ss_dssp EESSCCSCEEEEEEETTTEEEEE-ETTTEEEEEECSC
T ss_pred cccCCCCcceeEEECCCCcEEEE-CCCCeEEEEEccc
Confidence 43322234789999999987766 6799999999864
No 164
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.06 E-value=1.7e-09 Score=128.62 Aligned_cols=111 Identities=16% Similarity=0.126 Sum_probs=75.8
Q ss_pred CCeEEEEEecCcEEEEEccCCCceeEeeeeccCc---EEE--EEEecCCCCCCCCCCccccCcEEEEEEcCCCCCCCCCC
Q 003907 74 FKQVLLLGYQNGFQVLDVEDASNFNELVSKRDGP---VSF--LQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQ 148 (787)
Q Consensus 74 ~~~vL~lG~~~G~qVWdv~~~~~~~ells~~dg~---V~~--v~~lP~P~~~~~~d~F~~srpLLavV~~d~~~~~~~~~ 148 (787)
++++|+.+ ++.+++||+. +++...++..+... +.+ +.++|+. ..||+...+..
T Consensus 27 dg~~~~~~-~~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Spdg-------------~~l~~~~~~~~------- 84 (740)
T 4a5s_A 27 DHEYLYKQ-ENNILVFNAE-YGNSSVFLENSTFDEFGHSINDYSISPDG-------------QFILLEYNYVK------- 84 (740)
T ss_dssp SSEEEEEE-TTEEEEEETT-TCCEEEEECTTTTTTCCSCCCEEEECTTS-------------SEEEEEEEEEE-------
T ss_pred CCcEEEEc-CCcEEEEECC-CCceEEEEechhhhhhcccccceEECCCC-------------CEEEEEECCee-------
Confidence 36788887 6679999995 46677788777633 223 6667642 25665443210
Q ss_pred CcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCCcEEEEEecC--CeEEEEeCCeEEEEECCCCce
Q 003907 149 NRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRSSVCMVRCSP--RIVAVGLATQIYCFDALTLEN 223 (787)
Q Consensus 149 ~~~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~v~tL~f~s~V~sV~~s~--~~LaV~~~~~I~iwD~~T~e~ 223 (787)
+ +. +.....+.+||+++++..........+..++++| +.||.+.++.|++||+.+++.
T Consensus 85 -------~----~r------~~~~~~~~~~d~~~~~~~~l~~~~~~~~~~~~SPdG~~la~~~~~~i~~~~~~~~~~ 144 (740)
T 4a5s_A 85 -------Q----WR------HSYTASYDIYDLNKRQLITEERIPNNTQWVTWSPVGHKLAYVWNNDIYVKIEPNLPS 144 (740)
T ss_dssp -------C----SS------SCEEEEEEEEETTTTEECCSSCCCTTEEEEEECSSTTCEEEEETTEEEEESSTTSCC
T ss_pred -------e----EE------EccceEEEEEECCCCcEEEcccCCCcceeeEECCCCCEEEEEECCeEEEEECCCCce
Confidence 0 00 0112478899999998654334467899999999 688888889999999998874
No 165
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.01 E-value=1.2e-09 Score=128.29 Aligned_cols=51 Identities=18% Similarity=0.213 Sum_probs=41.3
Q ss_pred CEEEEEECCCCeEEEEEeCCCc----EEEEEecC--CeEEEEeC----------CeEEEEECCCCce
Q 003907 173 TAVRFYSFQSHCYEHVLRFRSS----VCMVRCSP--RIVAVGLA----------TQIYCFDALTLEN 223 (787)
Q Consensus 173 ~tVrlWdlktg~~v~tL~f~s~----V~sV~~s~--~~LaV~~~----------~~I~iwD~~T~e~ 223 (787)
++|++||+.+++....+..+.. |.+++++| +.||.+.. .+|++||+.+++.
T Consensus 36 ~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~ 102 (719)
T 1z68_A 36 NNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEF 102 (719)
T ss_dssp SCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEE
T ss_pred CCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCcc
Confidence 5799999999998877765543 88999988 67777654 6799999998875
No 166
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=98.93 E-value=4e-07 Score=99.04 Aligned_cols=96 Identities=8% Similarity=0.091 Sum_probs=65.4
Q ss_pred CCCceEEEEECCCCc--EEEEecc------CC----CCeEEEEECCCCCEEEEEEc-C---------CCEEEEEeCCCCc
Q 003907 346 DNAGIVVVKDFVTRA--IISQFKA------HT----SPISALCFDPSGTLLVTASV-Y---------GNNINIFRIMPSC 403 (787)
Q Consensus 346 ~~dG~V~IwDl~s~~--~v~~~~a------H~----~pIsaLaFSpdG~lLATaS~-d---------G~~IrVWdi~~~~ 403 (787)
..+|.|.++|+...+ .+..+.. +. .....++|+|+|+.|..+.. + +..|.+||+..
T Consensus 218 ~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t-- 295 (361)
T 2oiz_A 218 SYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKT-- 295 (361)
T ss_dssp BTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTT--
T ss_pred eCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCC--
Confidence 346789999987543 2222211 11 11123789999887776643 2 23699999864
Q ss_pred ccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEeCCCC
Q 003907 404 MRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPF 463 (787)
Q Consensus 404 ~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~~~ 463 (787)
+ +.+.++.-| . +.+|+|+|||++|++++. ++|.|||+.+.
T Consensus 296 -----~----------~~v~~i~~~---~-p~~ia~spdg~~l~v~n~-~~v~v~D~~t~ 335 (361)
T 2oiz_A 296 -----K----------QRVARIPGR---D-ALSMTIDQQRNLMLTLDG-GNVNVYDISQP 335 (361)
T ss_dssp -----T----------EEEEEEECT---T-CCEEEEETTTTEEEEECS-SCEEEEECSSS
T ss_pred -----C----------cEEEEEecC---C-eeEEEECCCCCEEEEeCC-CeEEEEECCCC
Confidence 2 456666544 2 789999999999999887 99999998764
No 167
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=98.90 E-value=3.9e-08 Score=116.85 Aligned_cols=76 Identities=14% Similarity=0.098 Sum_probs=50.9
Q ss_pred CEEEEEECCCCeEEEEEeCCC------cEEEEEecC--CeEEEEeC----------CeEEEEECCCCceeEEEEecCCcc
Q 003907 173 TAVRFYSFQSHCYEHVLRFRS------SVCMVRCSP--RIVAVGLA----------TQIYCFDALTLENKFSVLTYPVPQ 234 (787)
Q Consensus 173 ~tVrlWdlktg~~v~tL~f~s------~V~sV~~s~--~~LaV~~~----------~~I~iwD~~T~e~l~tl~t~p~p~ 234 (787)
++|++||+++++....+..+. ...++.++| +.|+.+.. ..+++||+.+++.. .+..++..
T Consensus 36 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~-~l~~~~~~- 113 (740)
T 4a5s_A 36 NNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLI-TEERIPNN- 113 (740)
T ss_dssp TEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEEC-CSSCCCTT-
T ss_pred CcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEEEEECCCCcEE-EcccCCCc-
Confidence 489999999999887776543 223467777 67777665 45789999998743 23322221
Q ss_pred cCCCCccccccccceeEEcc--ceEEEecC
Q 003907 235 LAGQGAVGINVGYGPMAVGP--RWLAYASN 262 (787)
Q Consensus 235 ~~~~~~~~~~~~~~~lAlsp--r~LAyas~ 262 (787)
....++|| ++|||..+
T Consensus 114 ------------~~~~~~SPdG~~la~~~~ 131 (740)
T 4a5s_A 114 ------------TQWVTWSPVGHKLAYVWN 131 (740)
T ss_dssp ------------EEEEEECSSTTCEEEEET
T ss_pred ------------ceeeEECCCCCEEEEEEC
Confidence 23567777 77777643
No 168
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=98.85 E-value=1.2e-06 Score=93.54 Aligned_cols=231 Identities=10% Similarity=-0.055 Sum_probs=140.2
Q ss_pred CeEEEEEecC-cEEEEEccCCCceeEeeeeccCcEEEEEEecCCCCCCCCCCccccCcEEEEEEcCCCCCCCCCCCcCCC
Q 003907 75 KQVLLLGYQN-GFQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHL 153 (787)
Q Consensus 75 ~~vL~lG~~~-G~qVWdv~~~~~~~ells~~dg~V~~v~~lP~P~~~~~~d~F~~srpLLavV~~d~~~~~~~~~~~~~~ 153 (787)
+++.++...+ .+.|||... +++...+. .......+.+.|+ . .|.+ +...
T Consensus 54 ~~lyv~~~~~~~v~viD~~t-~~~~~~i~-~~~~p~~i~~~~~------------g--~lyv-~~~~------------- 103 (328)
T 3dsm_A 54 GIGWIVVNNSHVIFAIDINT-FKEVGRIT-GFTSPRYIHFLSD------------E--KAYV-TQIW------------- 103 (328)
T ss_dssp TEEEEEEGGGTEEEEEETTT-CCEEEEEE-CCSSEEEEEEEET------------T--EEEE-EEBS-------------
T ss_pred CEEEEEEcCCCEEEEEECcc-cEEEEEcC-CCCCCcEEEEeCC------------C--eEEE-EECC-------------
Confidence 4566776654 599999964 55544443 2345666776542 1 2333 2201
Q ss_pred CCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCC------cEEEEEecCCeEEEEe---CCeEEEEECCCCcee
Q 003907 154 GGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRS------SVCMVRCSPRIVAVGL---ATQIYCFDALTLENK 224 (787)
Q Consensus 154 ~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~v~tL~f~s------~V~sV~~s~~~LaV~~---~~~I~iwD~~T~e~l 224 (787)
.++|.+||+++++.+.++.... ....|.+..+.|.|+. ++.|.+||+.+++.+
T Consensus 104 ------------------~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~~~~~lyv~~~~~~~~v~viD~~t~~~~ 165 (328)
T 3dsm_A 104 ------------------DYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQYGKYVYVNCWSYQNRILKIDTETDKVV 165 (328)
T ss_dssp ------------------CSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEEETTEEEEEECTTCCEEEEEETTTTEEE
T ss_pred ------------------CCeEEEEECCCCeEEEEEEcCCccccCCCcceEEEECCEEEEEcCCCCCEEEEEECCCCeEE
Confidence 2589999999999998887554 5555566666666653 568999999999887
Q ss_pred EEEEecCCcccCCCCccccccccceeEEcc-ceEEEecCCceecCcceeccccCCCCCcCCCcCCCCCceeEeeehhhhh
Q 003907 225 FSVLTYPVPQLAGQGAVGINVGYGPMAVGP-RWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSK 303 (787)
Q Consensus 225 ~tl~t~p~p~~~~~~~~~~~~~~~~lAlsp-r~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~sp~~g~lva~~a~d~sk 303 (787)
.++.....| ..++++| ..|.++... .
T Consensus 166 ~~i~~g~~p--------------~~i~~~~dG~l~v~~~~-------~-------------------------------- 192 (328)
T 3dsm_A 166 DELTIGIQP--------------TSLVMDKYNKMWTITDG-------G-------------------------------- 192 (328)
T ss_dssp EEEECSSCB--------------CCCEECTTSEEEEEBCC-------B--------------------------------
T ss_pred EEEEcCCCc--------------cceEEcCCCCEEEEECC-------C--------------------------------
Confidence 777643222 1234433 111111100 0
Q ss_pred hhhcccceeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECCCCcEEEEeccC-CCCeEEEEECCCCC
Q 003907 304 QFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAH-TSPISALCFDPSGT 382 (787)
Q Consensus 304 ~la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~v~~~~aH-~~pIsaLaFSpdG~ 382 (787)
+. . . ......+.|.++|..+++....+... ......|+|+|+|+
T Consensus 193 ------------~~--------~------~---------~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~ 237 (328)
T 3dsm_A 193 ------------YE--------G------S---------PYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRD 237 (328)
T ss_dssp ------------CT--------T------C---------SSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSC
T ss_pred ------------cc--------C------C---------ccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCC
Confidence 00 0 0 00112578999999999888777543 23678999999999
Q ss_pred EEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccC-CCEEEEE----eCCCeEEE
Q 003907 383 LLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHY-SQWIAIV----SSKGTCHV 457 (787)
Q Consensus 383 lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpD-g~~LAs~----S~dgTVhI 457 (787)
+|..+.. .|.+||+...... . ... +..+ ......|+++|+ ++..++. ..+++|.+
T Consensus 238 ~lyv~~~---~v~~~d~~t~~~~---~----------~~~--~~~~--~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v 297 (328)
T 3dsm_A 238 TLYWINN---DIWRMPVEADRVP---V----------RPF--LEFR--DTKYYGLTVNPNNGEVYVADAIDYQQQGIVYR 297 (328)
T ss_dssp EEEEESS---SEEEEETTCSSCC---S----------SCS--BCCC--SSCEEEEEECTTTCCEEEEECTTSSSEEEEEE
T ss_pred EEEEEcc---EEEEEECCCCcee---e----------eee--ecCC--CCceEEEEEcCCCCeEEEEcccccccCCEEEE
Confidence 9887754 4889998541000 0 000 0000 134789999995 5555555 57899999
Q ss_pred EeCC
Q 003907 458 FVLS 461 (787)
Q Consensus 458 wdl~ 461 (787)
||.+
T Consensus 298 ~d~~ 301 (328)
T 3dsm_A 298 YSPQ 301 (328)
T ss_dssp ECTT
T ss_pred ECCC
Confidence 9976
No 169
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=98.83 E-value=1.6e-07 Score=108.97 Aligned_cols=99 Identities=16% Similarity=0.198 Sum_probs=65.7
Q ss_pred ceEEEEECC-CC---cEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEE
Q 003907 349 GIVVVKDFV-TR---AIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYK 424 (787)
Q Consensus 349 G~V~IwDl~-s~---~~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~ 424 (787)
..|.+||+. ++ +.......|...+..++|+|||+++++++.+|. .+||.+... .+ .+..
T Consensus 217 ~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~l~~~~~~~~~-~~l~~~~~~-----~~-----------~~~~ 279 (662)
T 3azo_A 217 TELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGSLIVATDRTGW-WNLHRVDPA-----TG-----------AATQ 279 (662)
T ss_dssp EEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSCEEEEECTTSS-CEEEEECTT-----TC-----------CEEE
T ss_pred cEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCeEEEEECCCCC-eEEEEEECC-----CC-----------ceee
Confidence 478999998 56 444444566789999999999998888877653 445544211 01 1122
Q ss_pred Eecccccc-------cEEEEEEccCCCEEEEEeCCCeEEEEeCCCCCC
Q 003907 425 LHRGITSA-------TIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGG 465 (787)
Q Consensus 425 l~rG~~~a-------~I~slaFSpDg~~LAs~S~dgTVhIwdl~~~gg 465 (787)
+..+.... .+.+++|+||++++++++. ++++||.++..++
T Consensus 280 l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~~ 326 (662)
T 3azo_A 280 LCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILDPESG 326 (662)
T ss_dssp SSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEETTTT
T ss_pred cccccccccCccccccCceEeEeCCCEEEEEEEc-CccEEEEEECCCC
Confidence 21111100 1567999999999999999 9999997765433
No 170
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=98.82 E-value=2.4e-07 Score=99.29 Aligned_cols=98 Identities=7% Similarity=-0.033 Sum_probs=66.8
Q ss_pred CCCceEEEEECCCCcEEEEeccCCCCeEEEEECC-CCCEEEEEEcCC-----CEEEEEeCCCCcccCCCCCCccccCCcc
Q 003907 346 DNAGIVVVKDFVTRAIISQFKAHTSPISALCFDP-SGTLLVTASVYG-----NNINIFRIMPSCMRSGSGNHKYDWNSSH 419 (787)
Q Consensus 346 ~~dG~V~IwDl~s~~~v~~~~aH~~pIsaLaFSp-dG~lLATaS~dG-----~~IrVWdi~~~~~~~~~g~~~~~~~~s~ 419 (787)
..++.|.+||+.+++. ..+..|...+..++|+| ||+.||.++..+ ..|.++|+.. +
T Consensus 165 ~~~~~l~~~d~~~g~~-~~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~-------~---------- 226 (388)
T 3pe7_A 165 KPCCRLMRVDLKTGES-TVILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDG-------T---------- 226 (388)
T ss_dssp CCCEEEEEEETTTCCE-EEEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTS-------C----------
T ss_pred CCcceEEEEECCCCce-EEeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCC-------C----------
Confidence 3457899999998864 44556777899999999 999999888642 1366666532 1
Q ss_pred eEEEEEecccccccEEEEEEccCCCEEEEEeCC-C----eEEEEeCCC
Q 003907 420 VHLYKLHRGITSATIQDICFSHYSQWIAIVSSK-G----TCHVFVLSP 462 (787)
Q Consensus 420 ~~l~~l~rG~~~a~I~slaFSpDg~~LAs~S~d-g----TVhIwdl~~ 462 (787)
....+..+.....+..++|||||++|+..+.+ + +|++||+..
T Consensus 227 -~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~ 273 (388)
T 3pe7_A 227 -NMRKVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPET 273 (388)
T ss_dssp -CCEESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTT
T ss_pred -ceEEeeeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCC
Confidence 12223222211247789999999988776542 2 488998875
No 171
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.81 E-value=9.7e-08 Score=102.08 Aligned_cols=101 Identities=14% Similarity=0.118 Sum_probs=62.0
Q ss_pred ceEEEEECCCCcEEEEeccCCCCeEEEEECC-CCCEEEEEEc---------------CCCEEEEEeCCCCcccCCCCCCc
Q 003907 349 GIVVVKDFVTRAIISQFKAHTSPISALCFDP-SGTLLVTASV---------------YGNNINIFRIMPSCMRSGSGNHK 412 (787)
Q Consensus 349 G~V~IwDl~s~~~v~~~~aH~~pIsaLaFSp-dG~lLATaS~---------------dG~~IrVWdi~~~~~~~~~g~~~ 412 (787)
+.|.+||+.+++...... .. ... ++|+| ||++|++++. .+..|.+||+.. +
T Consensus 264 ~~l~~~d~~~g~~~~l~~-~~-~~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~-------~--- 330 (396)
T 3c5m_A 264 RVIYKANPETLENEEVMV-MP-PCS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKA-------K--- 330 (396)
T ss_dssp EEEEEECTTTCCEEEEEE-CC-SEE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTT-------T---
T ss_pred ceEEEEECCCCCeEEeee-CC-CCC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEeccc-------C---
Confidence 568899998876433221 11 233 89999 9999988652 235689999853 2
Q ss_pred cccCCcceEEEEEeccccc---------ccEEEEEEccCCCEEEEEeC-CCeEEEEeCCCCCCccccc
Q 003907 413 YDWNSSHVHLYKLHRGITS---------ATIQDICFSHYSQWIAIVSS-KGTCHVFVLSPFGGDSGFQ 470 (787)
Q Consensus 413 ~~~~~s~~~l~~l~rG~~~---------a~I~slaFSpDg~~LAs~S~-dgTVhIwdl~~~gg~~~~~ 470 (787)
.+..+..+... ..+.+++|+|||++|+.++. ++...||.++..++...+.
T Consensus 331 --------~~~~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~~~~~~~~~~~ 390 (396)
T 3c5m_A 331 --------SAQKLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYIADVPESYKHLE 390 (396)
T ss_dssp --------BCCEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEECCTTCC---
T ss_pred --------ceEEccCCCCccccccccccCCCCCceEccCCCeEEEEecCCCCceEEEEEEcccccccc
Confidence 11122211110 02466899999999888775 5778888887655555443
No 172
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=98.80 E-value=1.6e-06 Score=91.43 Aligned_cols=96 Identities=11% Similarity=0.188 Sum_probs=66.9
Q ss_pred CceEEEEECCCCcEEEEeccCCCCeEE-EEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEe
Q 003907 348 AGIVVVKDFVTRAIISQFKAHTSPISA-LCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLH 426 (787)
Q Consensus 348 dG~V~IwDl~s~~~v~~~~aH~~pIsa-LaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~ 426 (787)
...|.+|| +++....+..|...+.. ++|+ || ++++++.+| .++|| +.. | .. ..+.
T Consensus 243 ~~~l~~~d--~~~~~~l~~~~~~~~~~~~~~s-dg-~~~~~~~~~-~~~l~-~~~-------g----------~~-~~~~ 298 (347)
T 2gop_A 243 HNKLYIYD--GKEVMGILDEVDRGVGQAKIKD-GK-VYFTLFEEG-SVNLY-IWD-------G----------EI-KPIA 298 (347)
T ss_dssp SCEEEEEC--SSCEEESSTTCCSEEEEEEEET-TE-EEEEEEETT-EEEEE-EES-------S----------SE-EEEE
T ss_pred cceEEEEC--CCceEeccccCCcccCCccEEc-Cc-EEEEEecCC-cEEEE-EcC-------C----------ce-EEEe
Confidence 35688888 56655555677888886 9999 99 999998866 58999 842 3 12 2333
Q ss_pred cccccccEEEEEEccCCCEEEEEeCCCeE-EEEeCCCCCCcccccccc
Q 003907 427 RGITSATIQDICFSHYSQWIAIVSSKGTC-HVFVLSPFGGDSGFQTLS 473 (787)
Q Consensus 427 rG~~~a~I~slaFSpDg~~LAs~S~dgTV-hIwdl~~~gg~~~~~~H~ 473 (787)
.+ ...|.+++|+| +++++++.+++. +||.++ +....+..|+
T Consensus 299 ~~--~~~v~~~~~s~--~~~~~~~~~~~~~~l~~~~--g~~~~lt~~n 340 (347)
T 2gop_A 299 KG--RHWIMGFDVDE--IVVYLKETATRLRELFTWD--GEEKQLTDYN 340 (347)
T ss_dssp CS--SSEEEEEEESS--SEEEEEECSSSCCEEEEES--SSEEECCCTT
T ss_pred cC--CCeEEeeeeeC--cEEEEEcCCCChHHheEeC--CcEEEecccc
Confidence 32 34689999999 677777777765 888887 4444455554
No 173
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=98.78 E-value=2.6e-06 Score=90.75 Aligned_cols=98 Identities=14% Similarity=0.096 Sum_probs=71.0
Q ss_pred CCceEEEEECCCCcEEEEec--cCCCCeEEEEECCCCCEEEEEEc------CCCEEEEEeCCCCcccCCCCCCccccCCc
Q 003907 347 NAGIVVVKDFVTRAIISQFK--AHTSPISALCFDPSGTLLVTASV------YGNNINIFRIMPSCMRSGSGNHKYDWNSS 418 (787)
Q Consensus 347 ~dG~V~IwDl~s~~~v~~~~--aH~~pIsaLaFSpdG~lLATaS~------dG~~IrVWdi~~~~~~~~~g~~~~~~~~s 418 (787)
.++.|++||..+++.+..+. .+...+.+++|+| |.++++.+. .+..|++||... |
T Consensus 216 ~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~p-g~~~~~~g~~~v~~~~~~~v~~~~~~~-------g--------- 278 (329)
T 3fvz_A 216 ENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIP-GFLFAVNGKPYFGDQEPVQGFVMNFSS-------G--------- 278 (329)
T ss_dssp TTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEET-TEEEEEECCCCTTCSCCCCEEEEETTT-------C---------
T ss_pred CCCEEEEEECCCCcEEEEEeccccCCCcceeeecC-CEEEEeCCCEEeccCCCcEEEEEEcCC-------C---------
Confidence 46789999999889888884 5667889999999 544444332 123589999754 3
Q ss_pred ceEEEEEecc-cccccEEEEEEccCCCEEEEEeCCCeEEEEeCCC
Q 003907 419 HVHLYKLHRG-ITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSP 462 (787)
Q Consensus 419 ~~~l~~l~rG-~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~~ 462 (787)
..+..+..+ .......+|+|+|||+.+++.+.+++|++|++..
T Consensus 279 -~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~~ 322 (329)
T 3fvz_A 279 -EIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTLTE 322 (329)
T ss_dssp -CEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEEEEEEEE
T ss_pred -eEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEEEEeCCc
Confidence 344444211 1123589999999998888889999999999864
No 174
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=98.74 E-value=9e-06 Score=86.83 Aligned_cols=178 Identities=6% Similarity=-0.057 Sum_probs=117.5
Q ss_pred CEEEEEECCCCeEEEEEeCCCcEEEEEecC-CeEEEEe--CCeEEEEECCCCceeEEEEecCCcccCCCCccccccccce
Q 003907 173 TAVRFYSFQSHCYEHVLRFRSSVCMVRCSP-RIVAVGL--ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGP 249 (787)
Q Consensus 173 ~tVrlWdlktg~~v~tL~f~s~V~sV~~s~-~~LaV~~--~~~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~~~~~ 249 (787)
++|.+||.++++.+.++........|.+++ ..|.|+. ++.|++||+.+++...++...... + .
T Consensus 64 ~~v~viD~~t~~~~~~i~~~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~-----~---------~ 129 (328)
T 3dsm_A 64 HVIFAIDINTFKEVGRITGFTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIECPDMD-----M---------E 129 (328)
T ss_dssp TEEEEEETTTCCEEEEEECCSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCC-----T---------T
T ss_pred CEEEEEECcccEEEEEcCCCCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCcc-----c---------c
Confidence 589999999999999997666788888843 4555554 678999999999877776542210 0 0
Q ss_pred eEEccceEEEecCCceecCcceeccccCCCCCcCCCcCCCCCceeEeeehhhhhhhhcccceeecccccccCCCCCCCCc
Q 003907 250 MAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPV 329 (787)
Q Consensus 250 lAlspr~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~~ 329 (787)
. -.|.-|++.+.. + .+
T Consensus 130 ~-~~p~~i~~~~~~--------l--------------------yv----------------------------------- 145 (328)
T 3dsm_A 130 S-GSTEQMVQYGKY--------V--------------------YV----------------------------------- 145 (328)
T ss_dssp T-CBCCCEEEETTE--------E--------------------EE-----------------------------------
T ss_pred C-CCcceEEEECCE--------E--------------------EE-----------------------------------
Confidence 0 011222331110 0 00
Q ss_pred ccCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcC---------CCEEEEEeCC
Q 003907 330 SPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVY---------GNNINIFRIM 400 (787)
Q Consensus 330 s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~v~~~~aH~~pIsaLaFSpdG~lLATaS~d---------G~~IrVWdi~ 400 (787)
+....++.|.++|+.+++.+..+..... ...++|+|+|++++++..+ ...|.+||..
T Consensus 146 -------------~~~~~~~~v~viD~~t~~~~~~i~~g~~-p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~ 211 (328)
T 3dsm_A 146 -------------NCWSYQNRILKIDTETDKVVDELTIGIQ-PTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAE 211 (328)
T ss_dssp -------------EECTTCCEEEEEETTTTEEEEEEECSSC-BCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETT
T ss_pred -------------EcCCCCCEEEEEECCCCeEEEEEEcCCC-ccceEEcCCCCEEEEECCCccCCccccCCceEEEEECC
Confidence 0001367899999999998888876443 4689999999988877653 1468999975
Q ss_pred CCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEeCCC
Q 003907 401 PSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSP 462 (787)
Q Consensus 401 ~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~~ 462 (787)
. + .....+.... ......|+|+||+++|.++.. +|.+||+..
T Consensus 212 t-------~----------~v~~~~~~~~-g~~p~~la~~~d~~~lyv~~~--~v~~~d~~t 253 (328)
T 3dsm_A 212 T-------F----------TVEKQFKFKL-GDWPSEVQLNGTRDTLYWINN--DIWRMPVEA 253 (328)
T ss_dssp T-------T----------EEEEEEECCT-TCCCEEEEECTTSCEEEEESS--SEEEEETTC
T ss_pred C-------C----------eEEEEEecCC-CCCceeEEEecCCCEEEEEcc--EEEEEECCC
Confidence 3 2 2333332210 124789999999999988765 888888764
No 175
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.73 E-value=1.9e-06 Score=92.03 Aligned_cols=91 Identities=9% Similarity=-0.000 Sum_probs=58.1
Q ss_pred ceEEEEECCCCcEEEEeccCC--CCeEEEEECCCCCEEEEEEcCC----CEEEEEeCCCCcccCCCCCCccccCCcceEE
Q 003907 349 GIVVVKDFVTRAIISQFKAHT--SPISALCFDPSGTLLVTASVYG----NNINIFRIMPSCMRSGSGNHKYDWNSSHVHL 422 (787)
Q Consensus 349 G~V~IwDl~s~~~v~~~~aH~--~pIsaLaFSpdG~lLATaS~dG----~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l 422 (787)
..|.+||+..++.. .+..+. ..+..++|+|||++|+.++.++ ..|.+||+.. |. ...+
T Consensus 216 ~~l~~~d~~~~~~~-~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~-------g~--------~~~l 279 (396)
T 3c5m_A 216 ARMWLVNEDGSNVR-KIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPET-------LE--------NEEV 279 (396)
T ss_dssp CCCEEEETTSCCCE-ESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTT-------CC--------EEEE
T ss_pred ceEEEEECCCCcee-EeeccCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCC-------CC--------eEEe
Confidence 45677787655433 333332 3578899999999888776532 3389999853 20 1122
Q ss_pred EEEecccccccEEEEEEcc-CCCEEEEEe----------------CCCeEEEEeCCC
Q 003907 423 YKLHRGITSATIQDICFSH-YSQWIAIVS----------------SKGTCHVFVLSP 462 (787)
Q Consensus 423 ~~l~rG~~~a~I~slaFSp-Dg~~LAs~S----------------~dgTVhIwdl~~ 462 (787)
..+. + +. ++|+| ||++|+.++ .+..|.+||+..
T Consensus 280 ~~~~-~-----~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~ 329 (396)
T 3c5m_A 280 MVMP-P-----CS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKA 329 (396)
T ss_dssp EECC-S-----EE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTT
T ss_pred eeCC-C-----CC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEeccc
Confidence 2211 1 23 89999 999998865 346788888764
No 176
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=98.70 E-value=2.8e-05 Score=81.67 Aligned_cols=106 Identities=7% Similarity=0.023 Sum_probs=64.9
Q ss_pred CCeEEEEEecC-cEEEEEccCCCceeEeeeeccCcEEEEEEecCCCCCCCCCCccccCcEEEEEEcCCCCCCCCCCCcCC
Q 003907 74 FKQVLLLGYQN-GFQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSH 152 (787)
Q Consensus 74 ~~~vL~lG~~~-G~qVWdv~~~~~~~ells~~dg~V~~v~~lP~P~~~~~~d~F~~srpLLavV~~d~~~~~~~~~~~~~ 152 (787)
++++++++..+ ++.+||.+ .+++..+.......+..+.+.|+ + .+++. ..++.
T Consensus 55 ~g~l~~~~~~~~~i~~~d~~-~~~~~~~~~~~~~~~~~i~~~~d-----------g--~l~v~-~~~~~----------- 108 (333)
T 2dg1_A 55 QGQLFLLDVFEGNIFKINPE-TKEIKRPFVSHKANPAAIKIHKD-----------G--RLFVC-YLGDF----------- 108 (333)
T ss_dssp TSCEEEEETTTCEEEEECTT-TCCEEEEEECSSSSEEEEEECTT-----------S--CEEEE-ECTTS-----------
T ss_pred CCCEEEEECCCCEEEEEeCC-CCcEEEEeeCCCCCcceEEECCC-----------C--cEEEE-eCCCC-----------
Confidence 36677777654 59999985 45565555445567888887753 1 25432 21110
Q ss_pred CCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEe---CCCcEEEEEecC--CeEEEEeC-------CeEEEEECCC
Q 003907 153 LGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLR---FRSSVCMVRCSP--RIVAVGLA-------TQIYCFDALT 220 (787)
Q Consensus 153 ~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~v~tL~---f~s~V~sV~~s~--~~LaV~~~-------~~I~iwD~~T 220 (787)
...+.|.+||.++++....+. ....+.+|.+++ +++++... ..|+.||..+
T Consensus 109 -----------------~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~ 171 (333)
T 2dg1_A 109 -----------------KSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDF 171 (333)
T ss_dssp -----------------SSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTS
T ss_pred -----------------CCCceEEEEeCCCCEEEEEEccCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCC
Confidence 012579999998887654443 124688999987 44444432 3588888766
Q ss_pred Cc
Q 003907 221 LE 222 (787)
Q Consensus 221 ~e 222 (787)
++
T Consensus 172 ~~ 173 (333)
T 2dg1_A 172 RT 173 (333)
T ss_dssp CC
T ss_pred CE
Confidence 54
No 177
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=98.69 E-value=2e-06 Score=90.73 Aligned_cols=82 Identities=7% Similarity=0.084 Sum_probs=53.9
Q ss_pred eEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCC-------CEEEEEeCCCCcccCCCCCCccccCCcceEE
Q 003907 350 IVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYG-------NNINIFRIMPSCMRSGSGNHKYDWNSSHVHL 422 (787)
Q Consensus 350 ~V~IwDl~s~~~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG-------~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l 422 (787)
.|.++| +++ ...+..| ..+..+ +|||++||.++.++ ..|.+|| . + ..
T Consensus 201 ~l~~~d--~~~-~~~l~~~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~-------~-----------~~ 254 (347)
T 2gop_A 201 DIYIWE--DGK-EEKMFEK-VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--G-------K-----------EV 254 (347)
T ss_dssp EEEEEE--TTE-EEEEEEE-ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--S-------S-----------CE
T ss_pred cEEEeC--CCc-eEEeccC-cceeeE--CCCCCEEEEEEccccCCccccceEEEEC--C-------C-----------ce
Confidence 455566 444 3444445 555554 99999999887643 3466666 2 2 12
Q ss_pred EEEecccccccEEE-EEEccCCCEEEEEeCCCeEEEEeCC
Q 003907 423 YKLHRGITSATIQD-ICFSHYSQWIAIVSSKGTCHVFVLS 461 (787)
Q Consensus 423 ~~l~rG~~~a~I~s-laFSpDg~~LAs~S~dgTVhIwdl~ 461 (787)
..+..+ ....|.+ ++|+ || ++++++.+++++|| +.
T Consensus 255 ~~l~~~-~~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~ 290 (347)
T 2gop_A 255 MGILDE-VDRGVGQAKIKD-GK-VYFTLFEEGSVNLY-IW 290 (347)
T ss_dssp EESSTT-CCSEEEEEEEET-TE-EEEEEEETTEEEEE-EE
T ss_pred Eecccc-CCcccCCccEEc-Cc-EEEEEecCCcEEEE-Ec
Confidence 223222 2245776 9999 99 99999999999999 87
No 178
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=98.68 E-value=7.3e-06 Score=85.08 Aligned_cols=88 Identities=11% Similarity=0.167 Sum_probs=58.4
Q ss_pred CceEEEEECC-CCcE---EEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEE
Q 003907 348 AGIVVVKDFV-TRAI---ISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLY 423 (787)
Q Consensus 348 dG~V~IwDl~-s~~~---v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~ 423 (787)
++.|.+||+. +++. ...+..+...+..|+|+++|+++++. ++ .|.+||.. | ..+.
T Consensus 192 ~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~--~~-~v~~~~~~--------g----------~~~~ 250 (296)
T 3e5z_A 192 DNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA--GD-GVHVLTPD--------G----------DELG 250 (296)
T ss_dssp TTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE--TT-EEEEECTT--------S----------CEEE
T ss_pred CCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc--CC-eEEEECCC--------C----------CEEE
Confidence 4567777765 3433 23333355567789999999988877 34 58999963 2 3444
Q ss_pred EEecccccccEEEEEE-ccCCCEEEEEeCCCeEEEEeCCC
Q 003907 424 KLHRGITSATIQDICF-SHYSQWIAIVSSKGTCHVFVLSP 462 (787)
Q Consensus 424 ~l~rG~~~a~I~slaF-SpDg~~LAs~S~dgTVhIwdl~~ 462 (787)
.+... .. +.+++| +||++.|.+++.++ ||.+++
T Consensus 251 ~~~~~--~~-~~~~~f~~~d~~~L~v~t~~~---l~~~~~ 284 (296)
T 3e5z_A 251 RVLTP--QT-TSNLCFGGPEGRTLYMTVSTE---FWSIET 284 (296)
T ss_dssp EEECS--SC-CCEEEEESTTSCEEEEEETTE---EEEEEC
T ss_pred EEECC--CC-ceeEEEECCCCCEEEEEcCCe---EEEEEc
Confidence 44422 23 789999 69999999999874 555544
No 179
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=98.64 E-value=4.4e-06 Score=92.72 Aligned_cols=80 Identities=9% Similarity=0.107 Sum_probs=58.3
Q ss_pred CCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceE--EE
Q 003907 346 DNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVH--LY 423 (787)
Q Consensus 346 ~~dG~V~IwDl~s~~~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~--l~ 423 (787)
..+|.|.+||+.++.... +...|+|++|||+| ++.+..||+ |++|+... + .. ..
T Consensus 143 ~~dG~L~v~dl~~~~~~~----~~~~Vs~v~WSpkG--~~vg~~dg~-i~~~~~~~-------~----------~~~~k~ 198 (388)
T 1xip_A 143 NSVNDLSALDLRTKSTKQ----LAQNVTSFDVTNSQ--LAVLLKDRS-FQSFAWRN-------G----------EMEKQF 198 (388)
T ss_dssp ETTSEEEEEETTTCCEEE----EEESEEEEEECSSE--EEEEETTSC-EEEEEEET-------T----------EEEEEE
T ss_pred ECCCCEEEEEccCCcccc----ccCCceEEEEcCCc--eEEEEcCCc-EEEEcCCC-------c----------cccccc
Confidence 468999999999887643 45689999999999 566777676 89997632 1 11 33
Q ss_pred EEec----c---cccccEEEEEEccCCCEEEEE
Q 003907 424 KLHR----G---ITSATIQDICFSHYSQWIAIV 449 (787)
Q Consensus 424 ~l~r----G---~~~a~I~slaFSpDg~~LAs~ 449 (787)
++-+ + .+...|.+|+|.++++||++=
T Consensus 199 ~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y 231 (388)
T 1xip_A 199 EFSLPSELEELPVEEYSPLSVTILSPQDFLAVF 231 (388)
T ss_dssp EECCCHHHHTSCTTTSEEEEEEESSSSEEEEEE
T ss_pred eecCCcccccccCCCeeEEEEEEecCCeEEEEE
Confidence 3411 1 023579999999999999874
No 180
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=98.56 E-value=2.8e-05 Score=91.72 Aligned_cols=97 Identities=11% Similarity=-0.018 Sum_probs=65.6
Q ss_pred CceEEEEECCCCc--EEEEeccCCC--CeEEEEECCCCCEEEEEEcCCCE-EEEEeCCCCcccCCCCCCccccCCcceEE
Q 003907 348 AGIVVVKDFVTRA--IISQFKAHTS--PISALCFDPSGTLLVTASVYGNN-INIFRIMPSCMRSGSGNHKYDWNSSHVHL 422 (787)
Q Consensus 348 dG~V~IwDl~s~~--~v~~~~aH~~--pIsaLaFSpdG~lLATaS~dG~~-IrVWdi~~~~~~~~~g~~~~~~~~s~~~l 422 (787)
.+.|.+||+.++. ....+..|.. .|..++|++++.+++++..+|.. |.+||+.. | ..+
T Consensus 310 ~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~-------g----------~~~ 372 (710)
T 2xdw_A 310 NYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLAT-------G----------ALL 372 (710)
T ss_dssp TCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTT-------C----------CEE
T ss_pred CCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEEEEEECCEEEEEEEECCC-------C----------CEE
Confidence 4578889987764 2345555544 68889999888899999887642 55666532 3 234
Q ss_pred EEEecccccccEEEEEEccCCCEEEEEe----CCCeEEEEeCCCC
Q 003907 423 YKLHRGITSATIQDICFSHYSQWIAIVS----SKGTCHVFVLSPF 463 (787)
Q Consensus 423 ~~l~rG~~~a~I~slaFSpDg~~LAs~S----~dgTVhIwdl~~~ 463 (787)
..+... ...|..++|+||++.|+.+. ..+++.+||+...
T Consensus 373 ~~l~~~--~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg 415 (710)
T 2xdw_A 373 KIFPLE--VGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKE 415 (710)
T ss_dssp EEECCC--SSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSS
T ss_pred EecCCC--CceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCC
Confidence 445322 45688999999998766442 2468999998653
No 181
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=98.56 E-value=1.8e-05 Score=91.88 Aligned_cols=181 Identities=10% Similarity=-0.020 Sum_probs=121.3
Q ss_pred CEEEEEECCCCeEEEEEeCCCcEEEEEecC--CeEEEEe-CCeEEEEECC--CCceeEEEEecCCcccCCCCcccccccc
Q 003907 173 TAVRFYSFQSHCYEHVLRFRSSVCMVRCSP--RIVAVGL-ATQIYCFDAL--TLENKFSVLTYPVPQLAGQGAVGINVGY 247 (787)
Q Consensus 173 ~tVrlWdlktg~~v~tL~f~s~V~sV~~s~--~~LaV~~-~~~I~iwD~~--T~e~l~tl~t~p~p~~~~~~~~~~~~~~ 247 (787)
++|.++|..+++.+.++.....+..+.+++ ++|.|+. ++.|.+||+. +++.+.++.....
T Consensus 177 ~~V~viD~~t~~v~~~i~~g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~~--------------- 241 (567)
T 1qks_A 177 GQIALIDGSTYEIKTVLDTGYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSE--------------- 241 (567)
T ss_dssp TEEEEEETTTCCEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSE---------------
T ss_pred CeEEEEECCCCeEEEEEeCCCCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCCC---------------
Confidence 689999999999999999877888999987 6666655 4589999995 8887776653221
Q ss_pred ceeEEccceEEEecCCceecCcceeccccCCCCCcCCCcCCCCCceeEeeehhhhhhhhcccceeecccccccCCCCCCC
Q 003907 248 GPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSS 327 (787)
Q Consensus 248 ~~lAlspr~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~ 327 (787)
|+.+++.... .|++..+.
T Consensus 242 ------P~~ia~s~~~-----------------------~pDGk~l~--------------------------------- 259 (567)
T 1qks_A 242 ------ARSIETSKME-----------------------GWEDKYAI--------------------------------- 259 (567)
T ss_dssp ------EEEEEECCST-----------------------TCTTTEEE---------------------------------
T ss_pred ------CceeEEcccc-----------------------CCCCCEEE---------------------------------
Confidence 2334443100 00000000
Q ss_pred CcccCCccccccccccccCCCceEEEEECCCCcEEEEecc----------CCC-CeEEEEECCCCCEEEEEEcCCCEEEE
Q 003907 328 PVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKA----------HTS-PISALCFDPSGTLLVTASVYGNNINI 396 (787)
Q Consensus 328 ~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~v~~~~a----------H~~-pIsaLaFSpdG~lLATaS~dG~~IrV 396 (787)
.....++.|.|+|..+.+++..+.. |.. .+.++.+++++..++..-.+...|.+
T Consensus 260 ---------------v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~ 324 (567)
T 1qks_A 260 ---------------AGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILL 324 (567)
T ss_dssp ---------------EEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEE
T ss_pred ---------------EEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEE
Confidence 0012356788999999888887653 222 68899999998776666666667899
Q ss_pred EeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEe-CCCeEEEEeCCCC
Q 003907 397 FRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVS-SKGTCHVFVLSPF 463 (787)
Q Consensus 397 Wdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~LAs~S-~dgTVhIwdl~~~ 463 (787)
+|..+. . ...+..+..| ....++.|+|||++|.++. .+++|.++|+.+.
T Consensus 325 vd~~~~------~---------~~~v~~i~~~---~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~ 374 (567)
T 1qks_A 325 VDYTDL------N---------NLKTTEISAE---RFLHDGGLDGSHRYFITAANARNKLVVIDTKEG 374 (567)
T ss_dssp EETTCS------S---------EEEEEEEECC---SSEEEEEECTTSCEEEEEEGGGTEEEEEETTTT
T ss_pred EecCCC------c---------cceeeeeecc---ccccCceECCCCCEEEEEeCCCCeEEEEECCCC
Confidence 997531 0 0122333222 2467899999999987765 5789999999864
No 182
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=98.56 E-value=2e-06 Score=99.67 Aligned_cols=97 Identities=13% Similarity=0.001 Sum_probs=56.8
Q ss_pred eEEEEECCCCcEEEEeccCCCC--------eEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceE
Q 003907 350 IVVVKDFVTRAIISQFKAHTSP--------ISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVH 421 (787)
Q Consensus 350 ~V~IwDl~s~~~v~~~~aH~~p--------IsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~ 421 (787)
.|.+||+.+++....+..|... +..++|+|+|+++++++. ++ ++||.+... + ..
T Consensus 266 ~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~-~~l~~~d~~------~----------~~ 327 (662)
T 3azo_A 266 NLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GA-AVLGILDPE------S----------GE 327 (662)
T ss_dssp EEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SS-CEEEEEETT------T----------TE
T ss_pred EEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEEc-Cc-cEEEEEECC------C----------Cc
Confidence 4556666555544333333222 567999999999999988 65 799954221 1 13
Q ss_pred EEEEecccccccEEEE-EEccCCCEEEEEeCCCeEEEEeCCCCCCc
Q 003907 422 LYKLHRGITSATIQDI-CFSHYSQWIAIVSSKGTCHVFVLSPFGGD 466 (787)
Q Consensus 422 l~~l~rG~~~a~I~sl-aFSpDg~~LAs~S~dgTVhIwdl~~~gg~ 466 (787)
+..+..+ ...+..+ +++.+.-++++++.+....||.++..++.
T Consensus 328 ~~~l~~~--~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~d~~~g~ 371 (662)
T 3azo_A 328 LVDAAGP--WTEWAATLTVSGTRAVGVAASPRTAYEVVELDTVTGR 371 (662)
T ss_dssp EEECCSS--CCEEEEEEEEETTEEEEEEEETTEEEEEEEEETTTCC
T ss_pred EEEecCC--CCeEEEEEecCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence 4444322 2346666 55544445556677776777766544443
No 183
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=98.56 E-value=4.9e-05 Score=79.68 Aligned_cols=230 Identities=8% Similarity=-0.038 Sum_probs=148.0
Q ss_pred CCeEEEEEecCc-EEEEEccCCCceeEeeeecc-CcEEEEEEecCCCCCCCCCCccccCcEEEEEEcCCCCCCCCCCCcC
Q 003907 74 FKQVLLLGYQNG-FQVLDVEDASNFNELVSKRD-GPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRS 151 (787)
Q Consensus 74 ~~~vL~lG~~~G-~qVWdv~~~~~~~ells~~d-g~V~~v~~lP~P~~~~~~d~F~~srpLLavV~~d~~~~~~~~~~~~ 151 (787)
.+++|++|..++ +++||.+ ++++.-.+..++ ..+..+.++|+ +. +|+ +.
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~-tG~~~w~~~~~~~~~~~~~~~~pd-----------G~--ilv--s~------------- 54 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKD-TKEIVWEYPLEKGWECNSVAATKA-----------GE--ILF--SY------------- 54 (276)
T ss_dssp CCEEEEECTTCSEEEEEETT-TTEEEEEEECCTTCCCCEEEECTT-----------SC--EEE--EC-------------
T ss_pred CCcEEEeeCCCCEEEEEECC-CCeEEEEeCCCccCCCcCeEECCC-----------CC--EEE--eC-------------
Confidence 467888888766 8999984 466666666555 36788888874 22 553 32
Q ss_pred CCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCC--CcEEEEEecC--CeEEEEeC--CeEEEEECCCCceeE
Q 003907 152 HLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFR--SSVCMVRCSP--RIVAVGLA--TQIYCFDALTLENKF 225 (787)
Q Consensus 152 ~~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~v~tL~f~--s~V~sV~~s~--~~LaV~~~--~~I~iwD~~T~e~l~ 225 (787)
.+.|..||. +|+.+.+++.. ..+.++.+.+ ++|++... .+|+.+|. +++.++
T Consensus 55 --------------------~~~V~~~d~-~G~~~W~~~~~~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~ 112 (276)
T 3no2_A 55 --------------------SKGAKMITR-DGRELWNIAAPAGCEMQTARILPDGNALVAWCGHPSTILEVNM-KGEVLS 112 (276)
T ss_dssp --------------------BSEEEEECT-TSCEEEEEECCTTCEEEEEEECTTSCEEEEEESTTEEEEEECT-TSCEEE
T ss_pred --------------------CCCEEEECC-CCCEEEEEcCCCCccccccEECCCCCEEEEecCCCCEEEEEeC-CCCEEE
Confidence 147999999 89999999875 4677777765 67766543 46888886 788777
Q ss_pred EEEecCCcccCCCCccccccccceeEEccceEEEecCCceecCcceeccccCCCCCcCCCcCCCCCceeEeeehhhhhhh
Q 003907 226 SVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQF 305 (787)
Q Consensus 226 tl~t~p~p~~~~~~~~~~~~~~~~lAlspr~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~sp~~g~lva~~a~d~sk~l 305 (787)
++.....- . +... .++.++.. +.+..+
T Consensus 113 ~~~~~~~~--~-----------~~~~-~~~~v~~~---------------------------~~G~~l------------ 139 (276)
T 3no2_A 113 KTEFETGI--E-----------RPHA-QFRQINKN---------------------------KKGNYL------------ 139 (276)
T ss_dssp EEEECCSC--S-----------SGGG-SCSCCEEC---------------------------TTSCEE------------
T ss_pred EEeccCCC--C-----------cccc-cccCceEC---------------------------CCCCEE------------
Confidence 66421100 0 0000 00111110 011111
Q ss_pred hcccceeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEE
Q 003907 306 AAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLV 385 (787)
Q Consensus 306 a~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~v~~~~aH~~pIsaLaFSpdG~lLA 385 (787)
.....++.|.+||.. ++.+.++..+. ...++.+.++|++|+
T Consensus 140 -------------------------------------v~~~~~~~v~~~d~~-G~~~w~~~~~~-~~~~~~~~~~g~~~v 180 (276)
T 3no2_A 140 -------------------------------------VPLFATSEVREIAPN-GQLLNSVKLSG-TPFSSAFLDNGDCLV 180 (276)
T ss_dssp -------------------------------------EEETTTTEEEEECTT-SCEEEEEECSS-CCCEEEECTTSCEEE
T ss_pred -------------------------------------EEecCCCEEEEECCC-CCEEEEEECCC-CccceeEcCCCCEEE
Confidence 122347889999988 89888888764 455678899999999
Q ss_pred EEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEeccc----ccccEEEEEEccCCCEEEEEeCC--------C
Q 003907 386 TASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGI----TSATIQDICFSHYSQWIAIVSSK--------G 453 (787)
Q Consensus 386 TaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~----~~a~I~slaFSpDg~~LAs~S~d--------g 453 (787)
+++. +..|..||..+ | ..++++.+.. .-..+..++..+||+.+++.+.. +
T Consensus 181 ~~~~-~~~v~~~d~~t-------G----------~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~~~g~~~~~~~~~ 242 (276)
T 3no2_A 181 ACGD-AHCFVQLNLES-------N----------RIVRRVNANDIEGVQLFFVAQLFPLQNGGLYICNWQGHDREAGKGK 242 (276)
T ss_dssp ECBT-TSEEEEECTTT-------C----------CEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEEECTTCTTGGGSC
T ss_pred EeCC-CCeEEEEeCcC-------C----------cEEEEecCCCCCCccccccccceEcCCCCEEEEeccCccccccccC
Confidence 8877 44588888643 4 4677775421 11247899999999998887522 3
Q ss_pred eEEEEeCCCCC
Q 003907 454 TCHVFVLSPFG 464 (787)
Q Consensus 454 TVhIwdl~~~g 464 (787)
..+++.+++.|
T Consensus 243 ~~~~~~~~~~g 253 (276)
T 3no2_A 243 HPQLVEIDSEG 253 (276)
T ss_dssp CCSEEEECTTS
T ss_pred CceEEEECCCC
Confidence 45788887643
No 184
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=98.50 E-value=2.6e-05 Score=80.14 Aligned_cols=93 Identities=9% Similarity=0.141 Sum_probs=65.9
Q ss_pred CceEEEEECCCCcEEEEec--cCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEE
Q 003907 348 AGIVVVKDFVTRAIISQFK--AHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKL 425 (787)
Q Consensus 348 dG~V~IwDl~s~~~v~~~~--aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l 425 (787)
++.|.+||.. ++.+..+. .+...+..|+|+|+|+++++.+. +..|++||.. + ..+..+
T Consensus 141 ~~~i~~~~~~-g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~-~~~i~~~~~~--------g----------~~~~~~ 200 (286)
T 1q7f_A 141 VMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNR-AHCVKVFNYE--------G----------QYLRQI 200 (286)
T ss_dssp TTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSEEEEEEGG-GTEEEEEETT--------C----------CEEEEE
T ss_pred CCEEEEEcCC-CCEEEEeCCCCccCCcEEEEECCCCCEEEEECC-CCEEEEEcCC--------C----------CEEEEE
Confidence 4577888853 45555553 45567899999999998887766 4469999963 2 234444
Q ss_pred ecccccccEEEEEEccCCCEEEEEeCCC-eEEEEeC
Q 003907 426 HRGITSATIQDICFSHYSQWIAIVSSKG-TCHVFVL 460 (787)
Q Consensus 426 ~rG~~~a~I~slaFSpDg~~LAs~S~dg-TVhIwdl 460 (787)
........+..|+|++||+++++...++ +|.+|+.
T Consensus 201 ~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~ 236 (286)
T 1q7f_A 201 GGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ 236 (286)
T ss_dssp SCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT
T ss_pred ccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECC
Confidence 2110113588999999999988888886 9999984
No 185
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=98.49 E-value=9.8e-05 Score=76.35 Aligned_cols=97 Identities=13% Similarity=0.146 Sum_probs=63.1
Q ss_pred CceEEEEECC-CCc-----EEEEeccCC-CCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcce
Q 003907 348 AGIVVVKDFV-TRA-----IISQFKAHT-SPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHV 420 (787)
Q Consensus 348 dG~V~IwDl~-s~~-----~v~~~~aH~-~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~ 420 (787)
++.|.+||+. +++ ....+..+. .....|+++++|+++++...++ .|.+||... | .
T Consensus 197 ~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~-~i~~~d~~~-------g----------~ 258 (314)
T 1pjx_A 197 TKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSS-HIEVFGPDG-------G----------Q 258 (314)
T ss_dssp TTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTT-EEEEECTTC-------B----------S
T ss_pred CCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcCCC-EEEEEcCCC-------C----------c
Confidence 3556666654 332 233444554 5678899999999998877644 589998742 1 1
Q ss_pred EEEEEecccccccEEEEEEccCCCEEEEE-eCCCeEEEEeCCCCC
Q 003907 421 HLYKLHRGITSATIQDICFSHYSQWIAIV-SSKGTCHVFVLSPFG 464 (787)
Q Consensus 421 ~l~~l~rG~~~a~I~slaFSpDg~~LAs~-S~dgTVhIwdl~~~g 464 (787)
.+..+.. ....+.+++|++||++|.++ ..++.|..|++...+
T Consensus 259 ~~~~~~~--~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~~g 301 (314)
T 1pjx_A 259 PKMRIRC--PFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQRNG 301 (314)
T ss_dssp CSEEEEC--SSSCEEEEEECTTSSEEEEEETTTTEEEEEECSSCB
T ss_pred EeEEEeC--CCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCCCC
Confidence 1222221 12458999999999966555 456889999987543
No 186
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=98.48 E-value=0.00015 Score=84.26 Aligned_cols=233 Identities=13% Similarity=0.093 Sum_probs=138.7
Q ss_pred eEEEEEecC-cEEEEEccCCCceeEeeeeccCcEEEEEEecCCCCCCCCCCccccCcEEEEEEcCCCCCCCCCCCcCCCC
Q 003907 76 QVLLLGYQN-GFQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLG 154 (787)
Q Consensus 76 ~vL~lG~~~-G~qVWdv~~~~~~~ells~~dg~V~~v~~lP~P~~~~~~d~F~~srpLLavV~~d~~~~~~~~~~~~~~~ 154 (787)
.++++...+ .+.|+|.+. +++...+.... .+..+.+.|+. + +|.+ +++
T Consensus 168 ~~~V~~~~~~~V~viD~~t-~~v~~~i~~g~-~p~~v~~SpDG-----------r--~lyv-~~~--------------- 216 (567)
T 1qks_A 168 LFSVTLRDAGQIALIDGST-YEIKTVLDTGY-AVHISRLSASG-----------R--YLFV-IGR--------------- 216 (567)
T ss_dssp EEEEEETTTTEEEEEETTT-CCEEEEEECSS-CEEEEEECTTS-----------C--EEEE-EET---------------
T ss_pred eEEEEeCCCCeEEEEECCC-CeEEEEEeCCC-CccceEECCCC-----------C--EEEE-EcC---------------
Confidence 444444444 499999954 55555444322 45677887642 2 4444 321
Q ss_pred CcccCCcCCCCCCCCCCCCEEEEEECC--CCeEEEEEeCCCcEEEEEec----C--CeEEEEe--CCeEEEEECCCCcee
Q 003907 155 GVRDGMMDSQSGNCVNSPTAVRFYSFQ--SHCYEHVLRFRSSVCMVRCS----P--RIVAVGL--ATQIYCFDALTLENK 224 (787)
Q Consensus 155 ~~r~g~~~~~~~~~~~~p~tVrlWdlk--tg~~v~tL~f~s~V~sV~~s----~--~~LaV~~--~~~I~iwD~~T~e~l 224 (787)
.+.|.+||+. +++.+.++.-......++++ + ++|.|+. .++|.++|..|++.+
T Consensus 217 -----------------dg~V~viD~~~~t~~~v~~i~~G~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~ 279 (567)
T 1qks_A 217 -----------------DGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPK 279 (567)
T ss_dssp -----------------TSEEEEEETTSSSCCEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEE
T ss_pred -----------------CCeEEEEECCCCCCcEeEEEecCCCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEE
Confidence 1489999996 89999999876677889998 3 5777754 468999999999998
Q ss_pred EEEEecCCcccCCCCccccccccceeEEcc--ce--EEEecCCceecCcceeccccCCCCCcCCCcCCCCCceeEeeehh
Q 003907 225 FSVLTYPVPQLAGQGAVGINVGYGPMAVGP--RW--LAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAME 300 (787)
Q Consensus 225 ~tl~t~p~p~~~~~~~~~~~~~~~~lAlsp--r~--LAyas~~~~l~~~g~~s~q~lt~~~~s~s~sp~~g~lva~~a~d 300 (787)
.++.+...+. ....+.| |. ++.+... ..+
T Consensus 280 ~~i~~~~~~~-------------~~~~~~p~~rva~i~~s~~~---------------------------~~~------- 312 (567)
T 1qks_A 280 KIQSTRGMTY-------------DEQEYHPEPRVAAILASHYR---------------------------PEF------- 312 (567)
T ss_dssp EEEECCEECT-------------TTCCEESCCCEEEEEECSSS---------------------------SEE-------
T ss_pred EEEecccccc-------------ccccccCCCceEEEEEcCCC---------------------------CEE-------
Confidence 8886422110 0000000 00 1111000 000
Q ss_pred hhhhhhcccceeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECCCCcE--EEEeccCCCCeEEEEEC
Q 003907 301 HSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAI--ISQFKAHTSPISALCFD 378 (787)
Q Consensus 301 ~sk~la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~--v~~~~aH~~pIsaLaFS 378 (787)
.......|.|.++|..+.+. +..+. .......+.|+
T Consensus 313 -----------------------------------------vv~~~~~g~v~~vd~~~~~~~~v~~i~-~~~~~~d~~~~ 350 (567)
T 1qks_A 313 -----------------------------------------IVNVKETGKILLVDYTDLNNLKTTEIS-AERFLHDGGLD 350 (567)
T ss_dssp -----------------------------------------EEEETTTTEEEEEETTCSSEEEEEEEE-CCSSEEEEEEC
T ss_pred -----------------------------------------EEEecCCCeEEEEecCCCccceeeeee-ccccccCceEC
Confidence 01123468888899876542 23332 23446678999
Q ss_pred CCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEec-ccccccEEEEE-EccCCCEEEEEe--CCCe
Q 003907 379 PSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHR-GITSATIQDIC-FSHYSQWIAIVS--SKGT 454 (787)
Q Consensus 379 pdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~r-G~~~a~I~sla-FSpDg~~LAs~S--~dgT 454 (787)
|||++|.++......|.|+|+.. + ..+..+.- |.....-..+. |+||+..+.+.+ .+++
T Consensus 351 pdgr~~~va~~~sn~V~ViD~~t-------~----------kl~~~i~vgg~~Phpg~g~~~~~p~~g~v~~t~~~g~~~ 413 (567)
T 1qks_A 351 GSHRYFITAANARNKLVVIDTKE-------G----------KLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDS 413 (567)
T ss_dssp TTSCEEEEEEGGGTEEEEEETTT-------T----------EEEEEEECSSSSBCCTTCEEEEETTTEEEEEEEBSSSSE
T ss_pred CCCCEEEEEeCCCCeEEEEECCC-------C----------cEEEEEeccCcCCCCccceeeECCCCCcEEEeCCCCCCe
Confidence 99999988887677899999864 2 23333333 22111101122 688866655444 4689
Q ss_pred EEEEeCCC
Q 003907 455 CHVFVLSP 462 (787)
Q Consensus 455 VhIwdl~~ 462 (787)
|.|++..+
T Consensus 414 Vsvid~~~ 421 (567)
T 1qks_A 414 VALIGTDP 421 (567)
T ss_dssp EEEEECCT
T ss_pred EEEecCCC
Confidence 99999886
No 187
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=98.40 E-value=1.9e-05 Score=82.78 Aligned_cols=171 Identities=9% Similarity=0.078 Sum_probs=111.2
Q ss_pred CEEEEEECCCCeEEEEEeCCC--cEEEEEecC--CeEEEEeCCeEEEEECCCCceeEEEEecCCcccCCCCccccccccc
Q 003907 173 TAVRFYSFQSHCYEHVLRFRS--SVCMVRCSP--RIVAVGLATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYG 248 (787)
Q Consensus 173 ~tVrlWdlktg~~v~tL~f~s--~V~sV~~s~--~~LaV~~~~~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~~~~ 248 (787)
+.|.+||.++|+.+.++..+. .+.++.+.+ ++|+ +.++.|++||. +++.++++...... ...
T Consensus 15 ~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv-s~~~~V~~~d~-~G~~~W~~~~~~~~------------~~~ 80 (276)
T 3no2_A 15 NKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF-SYSKGAKMITR-DGRELWNIAAPAGC------------EMQ 80 (276)
T ss_dssp SEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE-ECBSEEEEECT-TSCEEEEEECCTTC------------EEE
T ss_pred CEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE-eCCCCEEEECC-CCCEEEEEcCCCCc------------ccc
Confidence 689999999999999998764 678888876 5666 66788999999 89998888752110 001
Q ss_pred eeEEccceEEEecCCceecCcceeccccCCCCCcCCCcCCCCCceeEeeehhhhhhhhcccceeecccccccCCCCCCCC
Q 003907 249 PMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSP 328 (787)
Q Consensus 249 ~lAlspr~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~ 328 (787)
.+++.+ ++..+++.
T Consensus 81 ~~~~~~----------------------------------dG~~lv~~-------------------------------- 94 (276)
T 3no2_A 81 TARILP----------------------------------DGNALVAW-------------------------------- 94 (276)
T ss_dssp EEEECT----------------------------------TSCEEEEE--------------------------------
T ss_pred ccEECC----------------------------------CCCEEEEe--------------------------------
Confidence 111111 11111110
Q ss_pred cccCCccccccccccccCCCceEEEEECCCCcEEEEec------cCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCC
Q 003907 329 VSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFK------AHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPS 402 (787)
Q Consensus 329 ~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~v~~~~------aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~ 402 (787)
...++.|..+|. +++.+..+. .+..+...+++.++|++|++.+.++ .|.+||..
T Consensus 95 ----------------~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~-~v~~~d~~-- 154 (276)
T 3no2_A 95 ----------------CGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATS-EVREIAPN-- 154 (276)
T ss_dssp ----------------ESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTT-EEEEECTT--
T ss_pred ----------------cCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCC-EEEEECCC--
Confidence 000223333342 333333332 2223455678899999999988755 58999963
Q ss_pred cccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEeCCC
Q 003907 403 CMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSP 462 (787)
Q Consensus 403 ~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~~ 462 (787)
| ..++++..+ ..+.++.+.++|+.|++++.++.|..||..+
T Consensus 155 ------G----------~~~w~~~~~---~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~t 195 (276)
T 3no2_A 155 ------G----------QLLNSVKLS---GTPFSSAFLDNGDCLVACGDAHCFVQLNLES 195 (276)
T ss_dssp ------S----------CEEEEEECS---SCCCEEEECTTSCEEEECBTTSEEEEECTTT
T ss_pred ------C----------CEEEEEECC---CCccceeEcCCCCEEEEeCCCCeEEEEeCcC
Confidence 3 477787654 2356788999999999999888888887654
No 188
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=98.37 E-value=0.00021 Score=74.93 Aligned_cols=99 Identities=11% Similarity=0.063 Sum_probs=59.8
Q ss_pred ceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEE--EEe
Q 003907 349 GIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLY--KLH 426 (787)
Q Consensus 349 G~V~IwDl~s~~~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~--~l~ 426 (787)
+.|..+|..+++... +..+...+..++|+|+|+.|..+...+..|.+||+... |. ....+. .+.
T Consensus 162 ~~l~~~~~~~~~~~~-~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~------g~-------~~~~~~~~~~~ 227 (333)
T 2dg1_A 162 GGVYYVSPDFRTVTP-IIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDD------GV-------TIQPFGATIPY 227 (333)
T ss_dssp EEEEEECTTSCCEEE-EEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTT------SS-------SEEEEEEEEEE
T ss_pred ceEEEEeCCCCEEEE-eecCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCC------Cc-------CcccccceEEE
Confidence 455566655444332 22333457899999999866555443456999998421 10 001110 010
Q ss_pred cccccccEEEEEEccCCCEEEEEeCCCeEEEEeCC
Q 003907 427 RGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLS 461 (787)
Q Consensus 427 rG~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~ 461 (787)
.......+..|+|++||+++++...++.|.+|+.+
T Consensus 228 ~~~~~~~~~~i~~d~~G~l~v~~~~~~~v~~~d~~ 262 (333)
T 2dg1_A 228 YFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNKR 262 (333)
T ss_dssp ECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECTT
T ss_pred ecCCCCCCCceEECCCCCEEEEEcCCCEEEEECCC
Confidence 00001357889999999988888888999999863
No 189
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=98.35 E-value=6.4e-05 Score=81.58 Aligned_cols=58 Identities=12% Similarity=0.082 Sum_probs=46.4
Q ss_pred CCEEEEEECCCCeEEEEEeCCCcEEEEEecC--CeEEEEe-----------CCeEEEEECCCCceeEEEEec
Q 003907 172 PTAVRFYSFQSHCYEHVLRFRSSVCMVRCSP--RIVAVGL-----------ATQIYCFDALTLENKFSVLTY 230 (787)
Q Consensus 172 p~tVrlWdlktg~~v~tL~f~s~V~sV~~s~--~~LaV~~-----------~~~I~iwD~~T~e~l~tl~t~ 230 (787)
+++|.+||..+++.+.++.....- .|.+++ ++|.++. ++.|.+||+.+++.+.++...
T Consensus 30 d~~v~v~D~~t~~~~~~i~~g~~p-~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~ 100 (361)
T 2oiz_A 30 ESRVHVYDYTNGKFLGMVPTAFNG-HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLP 100 (361)
T ss_dssp GCEEEEEETTTCCEEEEEECCEEE-EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEEC
T ss_pred cCeEEEEECCCCeEEEEecCCCCC-ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcC
Confidence 368999999999999988765434 888987 6777764 346999999999988888653
No 190
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=98.32 E-value=0.00018 Score=78.87 Aligned_cols=98 Identities=9% Similarity=0.078 Sum_probs=64.9
Q ss_pred CCceEEEEECCCCc--EEEEeccC----------CCCeEEEEECCCCCEEEEEEcC---------CCEEEEEeCCCCccc
Q 003907 347 NAGIVVVKDFVTRA--IISQFKAH----------TSPISALCFDPSGTLLVTASVY---------GNNINIFRIMPSCMR 405 (787)
Q Consensus 347 ~dG~V~IwDl~s~~--~v~~~~aH----------~~pIsaLaFSpdG~lLATaS~d---------G~~IrVWdi~~~~~~ 405 (787)
..|.|.+.|+.+.. .+..+... ......++|+|||+.|..+..+ +..|.|+|+..
T Consensus 232 ~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t---- 307 (373)
T 2mad_H 232 YSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLV---- 307 (373)
T ss_pred CCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCC----
Confidence 45788888886542 23333211 1224458899998887776532 23588889854
Q ss_pred CCCCCCccccCCcceEEEEEecccccccEEEEEEccCCC-EEEEEe-CCCeEEEEeCCCCC
Q 003907 406 SGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQ-WIAIVS-SKGTCHVFVLSPFG 464 (787)
Q Consensus 406 ~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~-~LAs~S-~dgTVhIwdl~~~g 464 (787)
+ +.+.++.-|. ....|+|+|||+ .|+++. .+++|.|||+....
T Consensus 308 ---~----------~vv~~i~~g~---~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~ 352 (373)
T 2mad_H 308 ---G----------QTSSQISLGH---DVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGD 352 (373)
T ss_pred ---C----------EEEEEEECCC---CcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCC
Confidence 2 3445554332 368999999999 677776 58999999998653
No 191
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=98.31 E-value=3.9e-05 Score=90.44 Aligned_cols=99 Identities=4% Similarity=-0.099 Sum_probs=64.1
Q ss_pred CceEEEEECCC------Cc-EEEEeccCCCCeEEEEECCCCCEEEEEEcCCC---EEEEEeCCCCcccCCCCCCccccCC
Q 003907 348 AGIVVVKDFVT------RA-IISQFKAHTSPISALCFDPSGTLLVTASVYGN---NINIFRIMPSCMRSGSGNHKYDWNS 417 (787)
Q Consensus 348 dG~V~IwDl~s------~~-~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~---~IrVWdi~~~~~~~~~g~~~~~~~~ 417 (787)
+..|.+||+.+ +. ....+..|...+.. .|+|+|+.|+..+.++. .|.+||+.. +.
T Consensus 258 ~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~-------~~------- 322 (710)
T 2xdw_A 258 VNRLWYCDLQQESNGITGILKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTD-------PE------- 322 (710)
T ss_dssp CCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTS-------CC-------
T ss_pred ccEEEEEECcccccccCCccceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCC-------CC-------
Confidence 45688888875 42 35666677766665 58999998887776433 578888743 10
Q ss_pred cceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEeCCC
Q 003907 418 SHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSP 462 (787)
Q Consensus 418 s~~~l~~l~rG~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~~ 462 (787)
...+..+..+.....|.+++|++++.++++...++..+||-++.
T Consensus 323 -~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~ 366 (710)
T 2xdw_A 323 -ESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDL 366 (710)
T ss_dssp -GGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEEEEEEEET
T ss_pred -cccceeccCCCCCCeEEEEEEEcCCEEEEEEEECCEEEEEEEEC
Confidence 00122333222223588999998888899999999766665543
No 192
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=98.30 E-value=0.00024 Score=75.46 Aligned_cols=53 Identities=17% Similarity=0.233 Sum_probs=44.2
Q ss_pred CCceEEEEECCCCcEEEEe---ccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCC
Q 003907 347 NAGIVVVKDFVTRAIISQF---KAHTSPISALCFDPSGTLLVTASVYGNNINIFRIM 400 (787)
Q Consensus 347 ~dG~V~IwDl~s~~~v~~~---~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~ 400 (787)
.+..|.+||+.+++.+..+ .+|......|+|+|+|+++++.+.++ .|++|++.
T Consensus 266 ~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~-~I~~~~~~ 321 (329)
T 3fvz_A 266 EPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTN-TVWKFTLT 321 (329)
T ss_dssp CCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSC-CEEEEEEE
T ss_pred CCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCC-EEEEEeCC
Confidence 4568999999999999888 46778899999999998888777755 59999973
No 193
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=98.29 E-value=0.00012 Score=74.18 Aligned_cols=96 Identities=9% Similarity=-0.046 Sum_probs=66.1
Q ss_pred CceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEec
Q 003907 348 AGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHR 427 (787)
Q Consensus 348 dG~V~IwDl~s~~~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~r 427 (787)
++.|.+||............+...+..|+++++|+++++...++ .|.+||.... ... .+..
T Consensus 170 ~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~-~v~~~~~~~~-----------------~~~-~~~~ 230 (270)
T 1rwi_B 170 NNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTN-QVVKLLAGST-----------------TST-VLPF 230 (270)
T ss_dssp GTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTS-CEEEECTTCS-----------------CCE-ECCC
T ss_pred CCEEEEEecCCCceEeecccCCCCceEEEECCCCCEEEEECCCC-cEEEEcCCCC-----------------cce-eecc
Confidence 35677777766554443334446788999999998887766544 4899987321 111 1111
Q ss_pred ccccccEEEEEEccCCCEEEEEeCCCeEEEEeCCCC
Q 003907 428 GITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPF 463 (787)
Q Consensus 428 G~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~~~ 463 (787)
+ ....+.+|+|++||+.+++.+.+++|++|++...
T Consensus 231 ~-~~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~~ 265 (270)
T 1rwi_B 231 T-GLNTPLAVAVDSDRTVYVADRGNDRVVKLTSLEH 265 (270)
T ss_dssp C-SCSCEEEEEECTTCCEEEEEGGGTEEEEECCCGG
T ss_pred C-CCCCceeEEECCCCCEEEEECCCCEEEEEcCCCc
Confidence 1 1135899999999998899999999999998753
No 194
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=98.25 E-value=1.5e-05 Score=93.80 Aligned_cols=97 Identities=8% Similarity=-0.097 Sum_probs=64.8
Q ss_pred CCceEEEEECCCCcE---EEEeccC-CCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEE
Q 003907 347 NAGIVVVKDFVTRAI---ISQFKAH-TSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHL 422 (787)
Q Consensus 347 ~dG~V~IwDl~s~~~---v~~~~aH-~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l 422 (787)
.++.|.+||+.+++. ...+..+ ...|..++|+ ++.++++.+.++. .+||.+... | ..+
T Consensus 293 ~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~-~~l~~~~~~------g----------~~~ 354 (695)
T 2bkl_A 293 PRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDAT-SEVRVATLK------G----------KPV 354 (695)
T ss_dssp TTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEEETTE-EEEEEEETT------C----------CEE
T ss_pred CCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEEEEEEECCE-EEEEEEeCC------C----------Cee
Confidence 468999999987653 3333333 4568889998 7888888888664 788866321 2 233
Q ss_pred EEEecccccccEEEEEEccCCCEEEEEe----CCCeEEEEeCCC
Q 003907 423 YKLHRGITSATIQDICFSHYSQWIAIVS----SKGTCHVFVLSP 462 (787)
Q Consensus 423 ~~l~rG~~~a~I~slaFSpDg~~LAs~S----~dgTVhIwdl~~ 462 (787)
..+. ......|..++|+||++.|+... ..++|.+||+..
T Consensus 355 ~~l~-~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~ 397 (695)
T 2bkl_A 355 RTVQ-LPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVST 397 (695)
T ss_dssp EECC-CSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTT
T ss_pred EEec-CCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCC
Confidence 3332 11234578899999998777443 347899999875
No 195
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=98.20 E-value=0.00088 Score=69.21 Aligned_cols=92 Identities=16% Similarity=0.102 Sum_probs=59.1
Q ss_pred ceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcc-eEEEEEec
Q 003907 349 GIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSH-VHLYKLHR 427 (787)
Q Consensus 349 G~V~IwDl~s~~~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~-~~l~~l~r 427 (787)
+.|..+|.. ++ +..+..+....+.++|+|+|++|++.+. +..|.+||+... |. . .....+ .
T Consensus 153 ~~l~~~~~~-g~-~~~~~~~~~~~~gi~~s~dg~~lv~~~~-~~~i~~~~~~~~------g~--------~~~~~~~~-~ 214 (296)
T 3e5z_A 153 RWVFRLAPD-GT-LSAPIRDRVKPNGLAFLPSGNLLVSDTG-DNATHRYCLNAR------GE--------TEYQGVHF-T 214 (296)
T ss_dssp CEEEEECTT-SC-EEEEECCCSSEEEEEECTTSCEEEEETT-TTEEEEEEECSS------SC--------EEEEEEEE-C
T ss_pred cEEEEECCC-CC-EEEeecCCCCCccEEECCCCCEEEEeCC-CCeEEEEEECCC------Cc--------CcCCCeEe-e
Confidence 455555554 33 3444566667789999999999955554 556999998421 21 0 011222 1
Q ss_pred ccccccEEEEEEccCCCEEEEEeCCCeEEEEeCC
Q 003907 428 GITSATIQDICFSHYSQWIAIVSSKGTCHVFVLS 461 (787)
Q Consensus 428 G~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~ 461 (787)
. ....+..|+|++||+++++. ++.|.+|+.+
T Consensus 215 ~-~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~~ 245 (296)
T 3e5z_A 215 V-EPGKTDGLRVDAGGLIWASA--GDGVHVLTPD 245 (296)
T ss_dssp C-SSSCCCSEEEBTTSCEEEEE--TTEEEEECTT
T ss_pred C-CCCCCCeEEECCCCCEEEEc--CCeEEEECCC
Confidence 1 22346789999999976666 7889999864
No 196
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=98.17 E-value=0.00081 Score=74.43 Aligned_cols=99 Identities=10% Similarity=0.094 Sum_probs=66.4
Q ss_pred CCCceEEEEECCCCc--EEEEec--------c--CCCCeEEEEECCCCCEEEEEEcC---------CCEEEEEeCCCCcc
Q 003907 346 DNAGIVVVKDFVTRA--IISQFK--------A--HTSPISALCFDPSGTLLVTASVY---------GNNINIFRIMPSCM 404 (787)
Q Consensus 346 ~~dG~V~IwDl~s~~--~v~~~~--------a--H~~pIsaLaFSpdG~lLATaS~d---------G~~IrVWdi~~~~~ 404 (787)
..+|.|.+.|+.+.. .+..+. . +...+..++++|+++.|..+..+ ++.|-++|+.+
T Consensus 244 s~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t--- 320 (386)
T 3sjl_D 244 TYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKT--- 320 (386)
T ss_dssp BTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTT---
T ss_pred eCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCC---
Confidence 447899999997654 333222 0 12234458889999988776531 35688889865
Q ss_pred cCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCC-EEEEE-eCCCeEEEEeCCCCC
Q 003907 405 RSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQ-WIAIV-SSKGTCHVFVLSPFG 464 (787)
Q Consensus 405 ~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~-~LAs~-S~dgTVhIwdl~~~g 464 (787)
+ +.+.++.-| ..+++|+||+|++ +|.++ ..+++|.|+|....+
T Consensus 321 ----~----------kv~~~i~vg---~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k 365 (386)
T 3sjl_D 321 ----G----------ERLAKFEMG---HEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGE 365 (386)
T ss_dssp ----C----------CEEEEEEEE---EEECEEEECSSSSCEEEEEETTTTEEEEEETTTCC
T ss_pred ----C----------eEEEEEECC---CCcceEEECCCCCeEEEEEcCCCCeEEEEECCCCc
Confidence 2 345555444 2578999999997 66665 458999999998654
No 197
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=98.11 E-value=0.00072 Score=75.80 Aligned_cols=57 Identities=9% Similarity=-0.071 Sum_probs=44.8
Q ss_pred CEEEEEECCCCeEEEEEeCC--------CcEEEEEecC--CeEEEEe---CCeEEEEECCCCceeEEEEe
Q 003907 173 TAVRFYSFQSHCYEHVLRFR--------SSVCMVRCSP--RIVAVGL---ATQIYCFDALTLENKFSVLT 229 (787)
Q Consensus 173 ~tVrlWdlktg~~v~tL~f~--------s~V~sV~~s~--~~LaV~~---~~~I~iwD~~T~e~l~tl~t 229 (787)
+.|.++|.++++.+.++... ..-..+.+++ ++|.|+. .+.|.++|+.+++.+.+|..
T Consensus 149 ~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v 218 (426)
T 3c75_H 149 DYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDV 218 (426)
T ss_dssp EEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEEC
T ss_pred CEEEEEECCCCcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEc
Confidence 48999999999999999764 2335677776 6777764 35799999999998887763
No 198
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=98.10 E-value=0.0003 Score=83.45 Aligned_cols=96 Identities=5% Similarity=-0.048 Sum_probs=62.8
Q ss_pred CceEEEEECCCC--cEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEE
Q 003907 348 AGIVVVKDFVTR--AIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKL 425 (787)
Q Consensus 348 dG~V~IwDl~s~--~~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l 425 (787)
.+.|.+||+.++ +....+..+...+..++|+ ++.++++...+|. .+||.+... | ..+..+
T Consensus 340 ~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~-~~~lv~~~~~dg~-~~l~~~~~~------g----------~~~~~l 401 (741)
T 1yr2_A 340 LKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA-GNRLFASYIHDAK-SQVLAFDLD------G----------KPAGAV 401 (741)
T ss_dssp TCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE-BTEEEEEEEETTE-EEEEEEETT------S----------CEEEEC
T ss_pred CCEEEEEeCCCCccccEEEecCCCCeEEEEEEE-CCEEEEEEEECCE-EEEEEEeCC------C----------Cceeec
Confidence 467888998774 3444455566667788887 6778888888664 677765321 2 233344
Q ss_pred ecccccccEEEEEEccCCCEEEEEe----CCCeEEEEeCCC
Q 003907 426 HRGITSATIQDICFSHYSQWIAIVS----SKGTCHVFVLSP 462 (787)
Q Consensus 426 ~rG~~~a~I~slaFSpDg~~LAs~S----~dgTVhIwdl~~ 462 (787)
.. .....|..++|+||++.|+... ..+++.+||+..
T Consensus 402 ~~-~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~t 441 (741)
T 1yr2_A 402 SL-PGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPAT 441 (741)
T ss_dssp BC-SSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTT
T ss_pred cC-CCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCC
Confidence 31 1234688999999998666332 347899999864
No 199
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=98.09 E-value=0.011 Score=59.81 Aligned_cols=92 Identities=11% Similarity=0.031 Sum_probs=60.9
Q ss_pred CceEEEEECCCCcEEEE-eccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEe
Q 003907 348 AGIVVVKDFVTRAIISQ-FKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLH 426 (787)
Q Consensus 348 dG~V~IwDl~s~~~v~~-~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~ 426 (787)
.+.|.+||. +++.... +..+...+..|+++++|+++++... +..|.+||. . +. ...+.+.
T Consensus 161 ~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~-~~~i~~~~~-~-------g~---------~~~~~~~ 221 (299)
T 2z2n_A 161 NNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEII-GNKIGRITT-S-------GE---------ITEFKIP 221 (299)
T ss_dssp TTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETT-TTEEEEECT-T-------CC---------EEEEECS
T ss_pred CCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccC-CceEEEECC-C-------Cc---------EEEEECC
Confidence 345667776 5544332 3344556889999999998876654 445889987 3 21 1112221
Q ss_pred cccccccEEEEEEccCCCEEEEEeCCCeEEEEeC
Q 003907 427 RGITSATIQDICFSHYSQWIAIVSSKGTCHVFVL 460 (787)
Q Consensus 427 rG~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl 460 (787)
.....+.+|++++||+..++...++.|.+|+.
T Consensus 222 --~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~ 253 (299)
T 2z2n_A 222 --TPNARPHAITAGAGIDLWFTEWGANKIGRLTS 253 (299)
T ss_dssp --STTCCEEEEEECSTTCEEEEETTTTEEEEEET
T ss_pred --CCCCCceeEEECCCCCEEEeccCCceEEEECC
Confidence 12245899999999997777667889999987
No 200
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=98.07 E-value=0.00067 Score=76.41 Aligned_cols=84 Identities=12% Similarity=0.038 Sum_probs=57.1
Q ss_pred CeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccc---------c---ccEEEEE
Q 003907 371 PISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGIT---------S---ATIQDIC 438 (787)
Q Consensus 371 pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~---------~---a~I~sla 438 (787)
....|.+||||++|..+......|.+||+... + ....+..+.-|-. . ..-+.++
T Consensus 322 ~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~------~--------~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~ 387 (462)
T 2ece_A 322 LVTDIDISLDDKFLYLSLWGIGEVRQYDISNP------F--------KPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLE 387 (462)
T ss_dssp CCCCEEECTTSCEEEEEETTTTEEEEEECSST------T--------SCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEE
T ss_pred ceeEEEECCCCCEEEEEeCCCCEEEEEEecCC------C--------CcEEEEEEEeCCeeccccccccccCCCCCCEEE
Confidence 46789999999999998887778999998521 1 1134444443311 0 0137799
Q ss_pred EccCCCEEEEEe------------CCCeEEEE--eCCCCCCcccc
Q 003907 439 FSHYSQWIAIVS------------SKGTCHVF--VLSPFGGDSGF 469 (787)
Q Consensus 439 FSpDg~~LAs~S------------~dgTVhIw--dl~~~gg~~~~ 469 (787)
+||||++|.++. ++..+.++ ++++.+| ..+
T Consensus 388 lSpDGk~LyVaNsl~~~wd~Qfyp~~~~~~~~~~~vd~~~G-L~~ 431 (462)
T 2ece_A 388 ISRDGRRVYVTNSLYSTWDNQFYPEGLKGWMVKLNANPSGG-LEI 431 (462)
T ss_dssp ECTTSSEEEEECCCCHHHHHHHSTTCCCCEEEEEEECTTSC-EEE
T ss_pred EcCCCCEEEEEcCCcccccccccCCCCceEEEEEEecCCCC-cee
Confidence 999999999998 33345555 7787766 443
No 201
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=98.07 E-value=0.0033 Score=65.52 Aligned_cols=69 Identities=14% Similarity=0.296 Sum_probs=48.4
Q ss_pred EeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEc-cC
Q 003907 364 QFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFS-HY 442 (787)
Q Consensus 364 ~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFS-pD 442 (787)
.+..+......|+++++|++.++... +..|.+||... | ..+..+... ...+++++|+ ||
T Consensus 193 ~~~~~~~~p~g~~~d~~G~lwva~~~-~~~v~~~d~~t-------G----------~~~~~i~~p--~~~~t~~~f~g~d 252 (297)
T 3g4e_A 193 KLEKEEQIPDGMCIDAEGKLWVACYN-GGRVIRLDPVT-------G----------KRLQTVKLP--VDKTTSCCFGGKN 252 (297)
T ss_dssp ECCGGGCEEEEEEEBTTSCEEEEEET-TTEEEEECTTT-------C----------CEEEEEECS--SSBEEEEEEESGG
T ss_pred ECCCCCCCCCeeEECCCCCEEEEEcC-CCEEEEEcCCC-------c----------eEEEEEECC--CCCceEEEEeCCC
Confidence 34444456788999999998887766 55688998643 3 344455432 2358999999 99
Q ss_pred CCEEEEEeCC
Q 003907 443 SQWIAIVSSK 452 (787)
Q Consensus 443 g~~LAs~S~d 452 (787)
++.|.+++..
T Consensus 253 ~~~L~vt~~~ 262 (297)
T 3g4e_A 253 YSEMYVTCAR 262 (297)
T ss_dssp GCEEEEEEBC
T ss_pred CCEEEEEcCC
Confidence 9988777754
No 202
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=98.01 E-value=0.0091 Score=63.26 Aligned_cols=68 Identities=9% Similarity=0.094 Sum_probs=45.1
Q ss_pred eccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEc-cCC
Q 003907 365 FKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFS-HYS 443 (787)
Q Consensus 365 ~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFS-pDg 443 (787)
+..+......++++++|++.++... +..|.+||.. | ..+..+.-. ...+.+++|+ +|+
T Consensus 225 ~~~~~~~p~gi~~d~~G~lwva~~~-~~~v~~~d~~--------g----------~~~~~i~~~--~~~~~~~af~g~d~ 283 (326)
T 2ghs_A 225 STGIKGGMDGSVCDAEGHIWNARWG-EGAVDRYDTD--------G----------NHIARYEVP--GKQTTCPAFIGPDA 283 (326)
T ss_dssp CTTSSSEEEEEEECTTSCEEEEEET-TTEEEEECTT--------C----------CEEEEEECS--CSBEEEEEEESTTS
T ss_pred CCCCCCCCCeeEECCCCCEEEEEeC-CCEEEEECCC--------C----------CEEEEEECC--CCCcEEEEEecCCC
Confidence 3333445678999999998877655 3458888862 2 233444322 2359999999 999
Q ss_pred CEEEEEeCCC
Q 003907 444 QWIAIVSSKG 453 (787)
Q Consensus 444 ~~LAs~S~dg 453 (787)
+.|.+++.++
T Consensus 284 ~~L~vt~~~~ 293 (326)
T 2ghs_A 284 SRLLVTSARE 293 (326)
T ss_dssp CEEEEEEBCT
T ss_pred CEEEEEecCC
Confidence 8887666543
No 203
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=98.00 E-value=0.0029 Score=69.93 Aligned_cols=73 Identities=12% Similarity=0.209 Sum_probs=50.3
Q ss_pred CeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEec-----cc--------ccccEEEE
Q 003907 371 PISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHR-----GI--------TSATIQDI 437 (787)
Q Consensus 371 pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~r-----G~--------~~a~I~sl 437 (787)
....|+|+|+|+++++-+..++.|++|++.. | .+..+.. |. .-.....|
T Consensus 324 ~P~gia~d~dG~lyvad~~~~~~I~~~~~~~-------G-----------~v~~~~g~~~~~g~~~g~~~~~~~~~P~gi 385 (409)
T 3hrp_A 324 QPNGMTVDEDGNFYIVDGFKGYCLRKLDILD-------G-----------YVSTVAGQVDVASQIDGTPLEATFNYPYDI 385 (409)
T ss_dssp SEEEEEECTTCCEEEEETTTTCEEEEEETTT-------T-----------EEEEEEECTTCBSCCCBSTTTCCBSSEEEE
T ss_pred CCeEEEEeCCCCEEEEeCCCCCEEEEEECCC-------C-----------EEEEEeCCCCCCCcCCCChhceEeCCceEE
Confidence 4678999999997766551467799999633 2 1222211 00 01247899
Q ss_pred EEccCCCEEEEEeCCCeEEEEeCC
Q 003907 438 CFSHYSQWIAIVSSKGTCHVFVLS 461 (787)
Q Consensus 438 aFSpDg~~LAs~S~dgTVhIwdl~ 461 (787)
++++||+++++-..++.|+.++++
T Consensus 386 avd~~g~lyVad~~n~~Ir~i~~e 409 (409)
T 3hrp_A 386 CYDGEGGYWIAEAWGKAIRKYAVE 409 (409)
T ss_dssp EECSSSEEEEEESTTCEEEEEEEC
T ss_pred EEcCCCCEEEEECCCCeEEEEEeC
Confidence 999999888888889999888763
No 204
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=97.96 E-value=9.6e-05 Score=81.93 Aligned_cols=89 Identities=9% Similarity=0.100 Sum_probs=69.6
Q ss_pred CCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEe
Q 003907 347 NAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLH 426 (787)
Q Consensus 347 ~dG~V~IwDl~s~~~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~ 426 (787)
.+|.|++||+.+......+..|..+|..+.+.+.. +|.++.+|. +.+||+.. + ... .+.
T Consensus 104 ~~~~l~v~dv~sl~~~~~~~~~~~~v~~i~~~~p~--~av~~~dG~-L~v~dl~~-------~----------~~~-~~~ 162 (388)
T 1xip_A 104 TRNALYSLDLEELSEFRTVTSFEKPVFQLKNVNNT--LVILNSVND-LSALDLRT-------K----------STK-QLA 162 (388)
T ss_dssp ESSEEEEEESSSTTCEEEEEECSSCEEEEEECSSE--EEEEETTSE-EEEEETTT-------C----------CEE-EEE
T ss_pred cCCcEEEEEchhhhccCccceeecceeeEEecCCC--EEEEECCCC-EEEEEccC-------C----------ccc-ccc
Confidence 46889999998877777788889999998887653 888888775 99999964 2 121 222
Q ss_pred cccccccEEEEEEccCCCEEEEEeCCCeEEEEeCCCC
Q 003907 427 RGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPF 463 (787)
Q Consensus 427 rG~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~~~ 463 (787)
..|.+++|||+| ++.+..||++++|+....
T Consensus 163 -----~~Vs~v~WSpkG--~~vg~~dg~i~~~~~~~~ 192 (388)
T 1xip_A 163 -----QNVTSFDVTNSQ--LAVLLKDRSFQSFAWRNG 192 (388)
T ss_dssp -----ESEEEEEECSSE--EEEEETTSCEEEEEEETT
T ss_pred -----CCceEEEEcCCc--eEEEEcCCcEEEEcCCCc
Confidence 259999999999 788999999999977543
No 205
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=97.89 E-value=0.00078 Score=74.04 Aligned_cols=54 Identities=9% Similarity=-0.119 Sum_probs=45.1
Q ss_pred EEEEEECCCCeEEEEEeCC-CcEEEEEecC--CeEEEEe-----------CCeEEEEECCCCceeEEEEe
Q 003907 174 AVRFYSFQSHCYEHVLRFR-SSVCMVRCSP--RIVAVGL-----------ATQIYCFDALTLENKFSVLT 229 (787)
Q Consensus 174 tVrlWdlktg~~v~tL~f~-s~V~sV~~s~--~~LaV~~-----------~~~I~iwD~~T~e~l~tl~t 229 (787)
+|.++|..+++.+.++... .+ .+.+++ +.|.|+. ++.|.+||+.|++...++..
T Consensus 47 ~vsvID~~t~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v 114 (368)
T 1mda_H 47 ENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIEL 114 (368)
T ss_dssp EEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEE
T ss_pred eEEEEECCCCeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEEC
Confidence 8999999999999999743 35 688877 6777764 46799999999999999875
No 206
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=97.83 E-value=0.0011 Score=70.76 Aligned_cols=56 Identities=9% Similarity=-0.033 Sum_probs=41.7
Q ss_pred CEEEEEECCCCeEEEEEeCCC-------cEEEEEecC--CeEEEE-----eCCeEEEEECCCCceeEEEE
Q 003907 173 TAVRFYSFQSHCYEHVLRFRS-------SVCMVRCSP--RIVAVG-----LATQIYCFDALTLENKFSVL 228 (787)
Q Consensus 173 ~tVrlWdlktg~~v~tL~f~s-------~V~sV~~s~--~~LaV~-----~~~~I~iwD~~T~e~l~tl~ 228 (787)
.+|.+||+++++.++++.++. .+.+|++++ ..+.++ ....|++||+.+++....+.
T Consensus 93 ~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~ 162 (343)
T 2qe8_A 93 PKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQ 162 (343)
T ss_dssp CEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECT
T ss_pred CeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEec
Confidence 589999999999999998752 357888874 455554 34579999999887655443
No 207
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=97.82 E-value=0.0021 Score=76.10 Aligned_cols=99 Identities=11% Similarity=0.087 Sum_probs=63.5
Q ss_pred CceEEEEECCCC--cEEEEeccCCCCeEEEEECCCCCEEEEEEcCC---CEEEEEeCCCCcccCCCCCCccccCCcceEE
Q 003907 348 AGIVVVKDFVTR--AIISQFKAHTSPISALCFDPSGTLLVTASVYG---NNINIFRIMPSCMRSGSGNHKYDWNSSHVHL 422 (787)
Q Consensus 348 dG~V~IwDl~s~--~~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG---~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l 422 (787)
...|.+||+.++ +....+..+...+.... +|+|+.|+..+.++ ..|.+||+.. + . ...
T Consensus 293 ~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~-~~dg~~l~~~s~~~~~~~~l~~~d~~~-------~--------~-~~~ 355 (741)
T 1yr2_A 293 VNTVHVARVTNGKIGPVTALIPDLKAQWDFV-DGVGDQLWFVSGDGAPLKKIVRVDLSG-------S--------T-PRF 355 (741)
T ss_dssp CCEEEEEEEETTEECCCEEEECSSSSCEEEE-EEETTEEEEEECTTCTTCEEEEEECSS-------S--------S-CEE
T ss_pred cceEEEEECCCCCCcccEEecCCCCceEEEE-eccCCEEEEEECCCCCCCEEEEEeCCC-------C--------c-ccc
Confidence 347888898776 31455666655555553 48999988887643 2477888742 1 0 122
Q ss_pred EEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEeCCCCCC
Q 003907 423 YKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGG 465 (787)
Q Consensus 423 ~~l~rG~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~~~gg 465 (787)
..+..+ ....|.+++|+ +++++++...|++.+||.++..++
T Consensus 356 ~~l~~~-~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~ 396 (741)
T 1yr2_A 356 DTVVPE-SKDNLESVGIA-GNRLFASYIHDAKSQVLAFDLDGK 396 (741)
T ss_dssp EEEECC-CSSEEEEEEEE-BTEEEEEEEETTEEEEEEEETTSC
T ss_pred EEEecC-CCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCC
Confidence 333322 22357788888 677888889999999998764333
No 208
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=97.79 E-value=0.0054 Score=63.89 Aligned_cols=50 Identities=8% Similarity=-0.000 Sum_probs=40.5
Q ss_pred CEEEEEECCCCeEEEEEeCCCcEEEEEecC-CeEEEEeCCeEEEEECCCCce
Q 003907 173 TAVRFYSFQSHCYEHVLRFRSSVCMVRCSP-RIVAVGLATQIYCFDALTLEN 223 (787)
Q Consensus 173 ~tVrlWdlktg~~v~tL~f~s~V~sV~~s~-~~LaV~~~~~I~iwD~~T~e~ 223 (787)
++|..||.++++. ..+.+...+..+.+++ ..|.++..+.|++||..+++.
T Consensus 35 ~~i~~~d~~~~~~-~~~~~~~~~~~i~~~~dG~l~v~~~~~l~~~d~~~g~~ 85 (297)
T 3g4e_A 35 KKVCRWDSFTKQV-QRVTMDAPVSSVALRQSGGYVATIGTKFCALNWKEQSA 85 (297)
T ss_dssp TEEEEEETTTCCE-EEEECSSCEEEEEEBTTSSEEEEETTEEEEEETTTTEE
T ss_pred CEEEEEECCCCcE-EEEeCCCceEEEEECCCCCEEEEECCeEEEEECCCCcE
Confidence 5899999998775 5677788999999987 346667788999999988764
No 209
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=97.70 E-value=0.0066 Score=71.71 Aligned_cols=58 Identities=16% Similarity=0.006 Sum_probs=41.8
Q ss_pred CEEEEEECCCCeEEEEEeCC------CcEE-EEEecCCeEEEEe-------CCeEEEEECCCCceeEEEEec
Q 003907 173 TAVRFYSFQSHCYEHVLRFR------SSVC-MVRCSPRIVAVGL-------ATQIYCFDALTLENKFSVLTY 230 (787)
Q Consensus 173 ~tVrlWdlktg~~v~tL~f~------s~V~-sV~~s~~~LaV~~-------~~~I~iwD~~T~e~l~tl~t~ 230 (787)
+.|..+|.++|+.+.+++.. ..+. ........|.++. ++.|+.||+.|++.++++...
T Consensus 138 g~l~alD~~tG~~~W~~~~~~~~~~~~~~~~~p~v~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~ 209 (677)
T 1kb0_A 138 GRLIALDAATGKEVWHQNTFEGQKGSLTITGAPRVFKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSV 209 (677)
T ss_dssp SEEEEEETTTCCEEEEEETTTTCCSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESS
T ss_pred CEEEEEECCCCCEEeeecCCcCcCcCcccccCcEEECCEEEEEecccccCCCCEEEEEECCCCcEEEEeccC
Confidence 58999999999999998764 1221 1112245556543 467999999999999998764
No 210
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=97.65 E-value=0.014 Score=68.67 Aligned_cols=94 Identities=9% Similarity=0.019 Sum_probs=62.7
Q ss_pred CceEEEEECCCCcE--EEEeccCCCCeEEEEECCCCCEEEEEEcCCC--EEEEEeCCCCcccCCCCCCccccCCcceEEE
Q 003907 348 AGIVVVKDFVTRAI--ISQFKAHTSPISALCFDPSGTLLVTASVYGN--NINIFRIMPSCMRSGSGNHKYDWNSSHVHLY 423 (787)
Q Consensus 348 dG~V~IwDl~s~~~--v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~--~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~ 423 (787)
.+.|.++|+.++.. ...|..|...+. .|+++|+.|+....++. .|++||+. | ....
T Consensus 304 ~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~--------g----------~~~~ 363 (693)
T 3iuj_A 304 NRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGYLFAEYMVDATARVEQFDYE--------G----------KRVR 363 (693)
T ss_dssp TCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTEEEEEEEETTEEEEEEECTT--------S----------CEEE
T ss_pred CCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCEEEEEEEECCeeEEEEEECC--------C----------CeeE
Confidence 45788888877643 345666766654 89999998887766553 47788863 2 1333
Q ss_pred EEecccccccEEEEEEccCCCEEEEEeCC----CeEEEEeCCC
Q 003907 424 KLHRGITSATIQDICFSHYSQWIAIVSSK----GTCHVFVLSP 462 (787)
Q Consensus 424 ~l~rG~~~a~I~slaFSpDg~~LAs~S~d----gTVhIwdl~~ 462 (787)
.+... ....+..+++++|++.|+....+ +++..||+..
T Consensus 364 ~l~~p-~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~ 405 (693)
T 3iuj_A 364 EVALP-GLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKS 405 (693)
T ss_dssp EECCS-SSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTT
T ss_pred EeecC-CCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCC
Confidence 34221 12357788899999877766555 7888888764
No 211
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=97.65 E-value=0.0013 Score=77.36 Aligned_cols=94 Identities=7% Similarity=0.072 Sum_probs=59.2
Q ss_pred CceEEEEECCCCc----EEEEeccCCCCeEEEEECCCCCEEEEEEcCC-C--EEEEEeCCCCcccCCCCCCccccCCcce
Q 003907 348 AGIVVVKDFVTRA----IISQFKAHTSPISALCFDPSGTLLVTASVYG-N--NINIFRIMPSCMRSGSGNHKYDWNSSHV 420 (787)
Q Consensus 348 dG~V~IwDl~s~~----~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG-~--~IrVWdi~~~~~~~~~g~~~~~~~~s~~ 420 (787)
...|.+|++.++. ++.....|...+..++|||||++|+..+.++ . .|.+|+... +
T Consensus 201 ~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~-------~----------- 262 (695)
T 2bkl_A 201 YTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGE-------K----------- 262 (695)
T ss_dssp GCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTC-------S-----------
T ss_pred CCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCC-------C-----------
Confidence 3468999998765 4444556767889999999999998887655 3 355554311 1
Q ss_pred EEEEEecccccccEEEEEEccCCCEEEEEeC----CCeEEEEeCCCC
Q 003907 421 HLYKLHRGITSATIQDICFSHYSQWIAIVSS----KGTCHVFVLSPF 463 (787)
Q Consensus 421 ~l~~l~rG~~~a~I~slaFSpDg~~LAs~S~----dgTVhIwdl~~~ 463 (787)
.+..+..+. ..+....| +||+ |+..++ +++|.+|++...
T Consensus 263 ~~~~l~~~~--~~~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~ 305 (695)
T 2bkl_A 263 DFRLLVKGV--GAKYEVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKP 305 (695)
T ss_dssp SCEEEEECS--SCCEEEEE-ETTE-EEEEECTTCTTCEEEEEBTTBC
T ss_pred ceEEeecCC--CceEEEEe-cCCc-EEEEECCCCCCCEEEEEeCCCC
Confidence 112222221 12455556 6777 555554 578999998653
No 212
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=97.56 E-value=0.087 Score=53.12 Aligned_cols=92 Identities=14% Similarity=0.046 Sum_probs=57.1
Q ss_pred CceEEEEECCCCcEEE-EeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEe
Q 003907 348 AGIVVVKDFVTRAIIS-QFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLH 426 (787)
Q Consensus 348 dG~V~IwDl~s~~~v~-~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~ 426 (787)
.+.|.+||. +++... .+..+...+.+|+++++|+++++... +..|.+||.. + .+..+.
T Consensus 203 ~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~-~~~i~~~d~~--------g-----------~~~~~~ 261 (299)
T 2z2n_A 203 GNKIGRITT-SGEITEFKIPTPNARPHAITAGAGIDLWFTEWG-ANKIGRLTSN--------N-----------IIEEYP 261 (299)
T ss_dssp TTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEETT-TTEEEEEETT--------T-----------EEEEEE
T ss_pred CceEEEECC-CCcEEEEECCCCCCCceeEEECCCCCEEEeccC-CceEEEECCC--------C-----------ceEEEe
Confidence 356667776 554322 23345567899999999998776645 3458899862 2 222221
Q ss_pred cccccccEEEEEEccCCCEEEEEeCCCeEEEEeCCC
Q 003907 427 RGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSP 462 (787)
Q Consensus 427 rG~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~~ 462 (787)
.......+.++++ ++|++.++.+ .+.+..|+...
T Consensus 262 ~~~~~~~~~~i~~-~~g~l~v~~~-~~~l~~~~~~~ 295 (299)
T 2z2n_A 262 IQIKSAEPHGICF-DGETIWFAME-CDKIGKLTLIK 295 (299)
T ss_dssp CSSSSCCEEEEEE-CSSCEEEEET-TTEEEEEEEC-
T ss_pred CCCCCCccceEEe-cCCCEEEEec-CCcEEEEEcCc
Confidence 1111245899999 9998777665 45666666653
No 213
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=97.50 E-value=0.0026 Score=64.13 Aligned_cols=93 Identities=10% Similarity=-0.007 Sum_probs=59.6
Q ss_pred ceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecc
Q 003907 349 GIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRG 428 (787)
Q Consensus 349 G~V~IwDl~s~~~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG 428 (787)
+.|.+||..+.........+...+..|+++++|+++++... +..|.+||... + ........+
T Consensus 129 ~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~-~~~i~~~~~~~-------~----------~~~~~~~~~ 190 (270)
T 1rwi_B 129 NRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTD-NNRVVKLEAES-------N----------NQVVLPFTD 190 (270)
T ss_dssp TEEEEECTTCCSCEECCCCSCCSCCCEEECTTCCEEEEEGG-GTEEEEECTTT-------C----------CEEECCCSS
T ss_pred CEEEEEECCCceeEeeccccCCCceeEEEeCCCCEEEEECC-CCEEEEEecCC-------C----------ceEeecccC
Confidence 45566655443332222233346788999999998877665 44589999742 1 111111111
Q ss_pred cccccEEEEEEccCCCEEEEEeCCCeEEEEeCC
Q 003907 429 ITSATIQDICFSHYSQWIAIVSSKGTCHVFVLS 461 (787)
Q Consensus 429 ~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~ 461 (787)
...+.+|++++||+.+++...++.|.+|+..
T Consensus 191 --~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~ 221 (270)
T 1rwi_B 191 --ITAPWGIAVDEAGTVYVTEHNTNQVVKLLAG 221 (270)
T ss_dssp --CCSEEEEEECTTCCEEEEETTTSCEEEECTT
T ss_pred --CCCceEEEECCCCCEEEEECCCCcEEEEcCC
Confidence 1358899999999888888788899999864
No 214
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=97.50 E-value=0.009 Score=67.27 Aligned_cols=99 Identities=11% Similarity=0.186 Sum_probs=70.6
Q ss_pred CCceEEEEECCCCcEEEEeccCCCC--eE-EEEECCCCCEEEEEE------------------cCCCEEEEEeCCCCccc
Q 003907 347 NAGIVVVKDFVTRAIISQFKAHTSP--IS-ALCFDPSGTLLVTAS------------------VYGNNINIFRIMPSCMR 405 (787)
Q Consensus 347 ~dG~V~IwDl~s~~~v~~~~aH~~p--Is-aLaFSpdG~lLATaS------------------~dG~~IrVWdi~~~~~~ 405 (787)
..|.|.+.|..+.+++.++..-..+ +. .+-|+|+++.|+|+. ..+..|.+||+..
T Consensus 162 ~~g~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~---- 237 (462)
T 2ece_A 162 GPGGILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRK---- 237 (462)
T ss_dssp SCCEEEEECTTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTT----
T ss_pred CCCeEEEEECCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCC----
Confidence 4588999999999999998743222 22 377899999999886 3467899999853
Q ss_pred CCCCCCccccCCcceEEEEEecccccccEEEEEE--ccCCCEEEEEe------CCCeEEEEeCCC
Q 003907 406 SGSGNHKYDWNSSHVHLYKLHRGITSATIQDICF--SHYSQWIAIVS------SKGTCHVFVLSP 462 (787)
Q Consensus 406 ~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaF--SpDg~~LAs~S------~dgTVhIwdl~~ 462 (787)
+ ..+.++.-|........|.| +|||+++.+++ .+++|.+|..+.
T Consensus 238 ---~----------k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~ 289 (462)
T 2ece_A 238 ---R----------KRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYED 289 (462)
T ss_dssp ---T----------EEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEET
T ss_pred ---C----------cEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecC
Confidence 2 34555554422223455656 99999988877 567898888753
No 215
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=97.45 E-value=5.7e-05 Score=82.39 Aligned_cols=91 Identities=12% Similarity=-0.004 Sum_probs=45.7
Q ss_pred CCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEE
Q 003907 346 DNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKL 425 (787)
Q Consensus 346 ~~dG~V~IwDl~s~~~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l 425 (787)
..+|.|..||..+++.+..+..|. ...++|++..|++++.+|+ |..||... | ..++++
T Consensus 99 ~~dg~v~a~D~~tG~~~w~~~~~~----~~~~~p~~~~v~~~~~dg~-v~a~d~~t-------G----------~~~W~~ 156 (369)
T 2hz6_A 99 KKQDIWYVIDLLTGEKQQTLSSAF----ADSLSPSTSLLYLGRTEYT-ITMYDTKT-------R----------ELRWNA 156 (369)
T ss_dssp EEEEEEEEECCC--------------------------EEEEEEEEE-EECCCSSS-------S----------SCCCEE
T ss_pred eCCCEEEEEECCCCcEEEEecCCC----cccccccCCEEEEEecCCE-EEEEECCC-------C----------CEEEeE
Confidence 357889999999999888877664 2456778888988888564 89999854 3 222333
Q ss_pred ecccccccEEEEEEccCC---CEEEEEeCCCeEEEEeCCC
Q 003907 426 HRGITSATIQDICFSHYS---QWIAIVSSKGTCHVFVLSP 462 (787)
Q Consensus 426 ~rG~~~a~I~slaFSpDg---~~LAs~S~dgTVhIwdl~~ 462 (787)
..+. ....+++.|. ..+++++.||.++.||...
T Consensus 157 ~~~~----~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~t 192 (369)
T 2hz6_A 157 TYFD----YAASLPEDDVDYKMSHFVSNGDGLVVTVDSES 192 (369)
T ss_dssp EEEE----ECCBCCCCCTTCCCCEEEEETSCEEEEECTTT
T ss_pred eccc----ccCccccCCccccceEEEECCCCEEEEEECCC
Confidence 2111 1224445543 5577788999999999875
No 216
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=97.45 E-value=0.032 Score=58.52 Aligned_cols=174 Identities=13% Similarity=0.074 Sum_probs=113.4
Q ss_pred CEEEEEECCCCeEEEEEeCCC--cEEEEEecCCeEEEEe--CCeEEEEECCCCceeEEEEecCCcccCCCCccccccccc
Q 003907 173 TAVRFYSFQSHCYEHVLRFRS--SVCMVRCSPRIVAVGL--ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYG 248 (787)
Q Consensus 173 ~tVrlWdlktg~~v~tL~f~s--~V~sV~~s~~~LaV~~--~~~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~~~~ 248 (787)
++|+++|+++++.+.++.... ....+.+..+.|.++. ++.+.++|..|++.+.++... .|+
T Consensus 44 s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~g~~lyv~t~~~~~v~viD~~t~~v~~~i~~g-~~~-------------- 108 (266)
T 2iwa_A 44 SSVRQVALQTGKVENIHKMDDSYFGEGLTLLNEKLYQVVWLKNIGFIYDRRTLSNIKNFTHQ-MKD-------------- 108 (266)
T ss_dssp CEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEETTCSEEEEEETTTTEEEEEEECC-SSS--------------
T ss_pred CEEEEEECCCCCEEEEEecCCCcceEEEEEeCCEEEEEEecCCEEEEEECCCCcEEEEEECC-CCC--------------
Confidence 589999999999999998655 3345666677777765 568999999999988877532 110
Q ss_pred eeEEccceEEEecCCceecCcceeccccCCCCCcCCCcCCCCCceeEeeehhhhhhhhcccceeecccccccCCCCCCCC
Q 003907 249 PMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSP 328 (787)
Q Consensus 249 ~lAlspr~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~ 328 (787)
...+ ++.+. .+.
T Consensus 109 g~gl-----t~Dg~-----------------------------~l~---------------------------------- 120 (266)
T 2iwa_A 109 GWGL-----ATDGK-----------------------------ILY---------------------------------- 120 (266)
T ss_dssp CCEE-----EECSS-----------------------------SEE----------------------------------
T ss_pred eEEE-----EECCC-----------------------------EEE----------------------------------
Confidence 0112 11110 000
Q ss_pred cccCCccccccccccccCCCceEEEEECCCCcEEEEeccC--CC---CeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCc
Q 003907 329 VSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAH--TS---PISALCFDPSGTLLVTASVYGNNINIFRIMPSC 403 (787)
Q Consensus 329 ~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~v~~~~aH--~~---pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~ 403 (787)
....+++|.++|..+.+.+..+.-- .. .++.|.|. +|++.|+... ...|.+.|..+
T Consensus 121 ---------------vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~lyvn~~~-~~~V~vID~~t-- 181 (266)
T 2iwa_A 121 ---------------GSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGEVWANIWQ-TDCIARISAKD-- 181 (266)
T ss_dssp ---------------EECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETT-SSEEEEEETTT--
T ss_pred ---------------EECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCEEEEecCC-CCeEEEEECCC--
Confidence 0012568999999998888887632 22 36788888 7866655544 55689999864
Q ss_pred ccCCCCCCccccCCcceEEEEEec-ccc----------cccEEEEEEccCCCEEEEEe-CCCeEEEEeCCCC
Q 003907 404 MRSGSGNHKYDWNSSHVHLYKLHR-GIT----------SATIQDICFSHYSQWIAIVS-SKGTCHVFVLSPF 463 (787)
Q Consensus 404 ~~~~~g~~~~~~~~s~~~l~~l~r-G~~----------~a~I~slaFSpDg~~LAs~S-~dgTVhIwdl~~~ 463 (787)
| ..+..+.- |.. ......|+|+||++.|.+++ ..+++.+.++.+.
T Consensus 182 -----g----------~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~ 238 (266)
T 2iwa_A 182 -----G----------TLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLV 238 (266)
T ss_dssp -----C----------CEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEEC
T ss_pred -----C----------cEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEecc
Confidence 3 23334432 210 12468999999987655554 6788888888764
No 217
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=97.40 E-value=0.14 Score=51.63 Aligned_cols=91 Identities=12% Similarity=0.088 Sum_probs=58.0
Q ss_pred ceEEEEECCCCcEEE-EeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEec
Q 003907 349 GIVVVKDFVTRAIIS-QFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHR 427 (787)
Q Consensus 349 G~V~IwDl~s~~~v~-~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~r 427 (787)
+.|.++|. +++... .+..+...+..|+++++|++.++... +..|.+||. . +. ...+.+..
T Consensus 167 ~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~-~~~i~~~~~-~-------g~---------~~~~~~~~ 227 (300)
T 2qc5_A 167 NSIGRITN-TGKLEEYPLPTNAAAPVGITSGNDGALWFVEIM-GNKIGRITT-T-------GE---------ISEYDIPT 227 (300)
T ss_dssp TEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETT-TTEEEEECT-T-------CC---------EEEEECSS
T ss_pred CeEEEECC-CCcEEEeeCCCCCCCcceEEECCCCCEEEEccC-CCEEEEEcC-C-------Cc---------EEEEECCC
Confidence 45566665 333322 12234456889999999998876654 445888886 2 21 11122211
Q ss_pred ccccccEEEEEEccCCCEEEEEeCCCeEEEEeC
Q 003907 428 GITSATIQDICFSHYSQWIAIVSSKGTCHVFVL 460 (787)
Q Consensus 428 G~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl 460 (787)
....+.+|+++++|+..++...++.|.+|+.
T Consensus 228 --~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~ 258 (300)
T 2qc5_A 228 --PNARPHAITAGKNSEIWFTEWGANQIGRITN 258 (300)
T ss_dssp --TTCCEEEEEECSTTCEEEEETTTTEEEEECT
T ss_pred --CCCCceEEEECCCCCEEEeccCCCeEEEECC
Confidence 1235899999999997777667788999886
No 218
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=97.37 E-value=0.028 Score=62.01 Aligned_cols=94 Identities=5% Similarity=-0.064 Sum_probs=57.7
Q ss_pred CceEEEEECCCCcEEEE----eccCCC--CeEEEEECCC-CCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcce
Q 003907 348 AGIVVVKDFVTRAIISQ----FKAHTS--PISALCFDPS-GTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHV 420 (787)
Q Consensus 348 dG~V~IwDl~s~~~v~~----~~aH~~--pIsaLaFSpd-G~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~ 420 (787)
++.|..||..++..... ..++.. |.+.|+|+|+ |.++++ ....+.|++|+.. | .
T Consensus 239 ~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~-d~~~~~I~~~~~~--------g----------~ 299 (409)
T 3hrp_A 239 NKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMS-DQNLSSVYKITPD--------G----------E 299 (409)
T ss_dssp TCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEE-ETTTTEEEEECTT--------C----------C
T ss_pred CCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEE-eCCCCEEEEEecC--------C----------C
Confidence 56777888776653222 222222 2348999995 555554 4446678888863 2 0
Q ss_pred EEEEEe-c----cc--------ccccEEEEEEccCCCEEEEEe-CCCeEEEEeCC
Q 003907 421 HLYKLH-R----GI--------TSATIQDICFSHYSQWIAIVS-SKGTCHVFVLS 461 (787)
Q Consensus 421 ~l~~l~-r----G~--------~~a~I~slaFSpDg~~LAs~S-~dgTVhIwdl~ 461 (787)
+..+. . |. .-.....|+|++||+++++-+ .++.|+.|++.
T Consensus 300 -~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~ 353 (409)
T 3hrp_A 300 -CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDIL 353 (409)
T ss_dssp -EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETT
T ss_pred -EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECC
Confidence 11111 0 10 012378999999999888877 88999999974
No 219
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=97.36 E-value=0.054 Score=57.22 Aligned_cols=97 Identities=12% Similarity=0.137 Sum_probs=58.2
Q ss_pred ceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCC-CCccccCCcceEEEEEec
Q 003907 349 GIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSG-NHKYDWNSSHVHLYKLHR 427 (787)
Q Consensus 349 G~V~IwDl~s~~~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g-~~~~~~~~s~~~l~~l~r 427 (787)
+.|..+| +++. ..+..+....+.++|+|||+.|..+...+..|.+||+... .| .. . ....+..+.
T Consensus 161 ~~l~~~~--~g~~-~~~~~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~-----~Gl~~----~-~~~~~~~~~- 226 (326)
T 2ghs_A 161 GSIYHVA--KGKV-TKLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDAR-----TGLPT----G-KAEVFIDST- 226 (326)
T ss_dssp EEEEEEE--TTEE-EEEEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTT-----TCCBS----S-CCEEEEECT-
T ss_pred eEEEEEe--CCcE-EEeeCCCcccCCeEEcCCCCEEEEEECCCCEEEEEEcccc-----cCCcc----c-CceEEEECC-
Confidence 3455555 3433 2233333456789999999987666654567999997410 01 00 0 001222221
Q ss_pred ccccccEEEEEEccCCCEEEEEeCCCeEEEEeC
Q 003907 428 GITSATIQDICFSHYSQWIAIVSSKGTCHVFVL 460 (787)
Q Consensus 428 G~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl 460 (787)
+ ....+..+++++||++.++...++.|.+|+.
T Consensus 227 ~-~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~ 258 (326)
T 2ghs_A 227 G-IKGGMDGSVCDAEGHIWNARWGEGAVDRYDT 258 (326)
T ss_dssp T-SSSEEEEEEECTTSCEEEEEETTTEEEEECT
T ss_pred C-CCCCCCeeEECCCCCEEEEEeCCCEEEEECC
Confidence 1 1234678999999998777777788999876
No 220
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=97.33 E-value=0.00073 Score=74.79 Aligned_cols=98 Identities=10% Similarity=0.024 Sum_probs=73.0
Q ss_pred CceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEc---------CCCEEEEEeCCCCcccCCCCCCccccCCc
Q 003907 348 AGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASV---------YGNNINIFRIMPSCMRSGSGNHKYDWNSS 418 (787)
Q Consensus 348 dG~V~IwDl~s~~~v~~~~aH~~pIsaLaFSpdG~lLATaS~---------dG~~IrVWdi~~~~~~~~~g~~~~~~~~s 418 (787)
++.|.+.|..+++.+.++..-..| . |+|||||++|..++. ++..|.+||..+.
T Consensus 58 ~~~V~ViD~~t~~v~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~---------------- 119 (386)
T 3sjl_D 58 VTQQFVIDGEAGRVIGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTL---------------- 119 (386)
T ss_dssp SEEEEEEETTTTEEEEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTC----------------
T ss_pred CCEEEEEECCCCeEEEEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEECCCC----------------
Confidence 579999999999999999877777 4 999999998877762 2346999998652
Q ss_pred ceEEEEEeccc-----ccccEEEEEEccCCCEEEEEeC--CCeEEEEeCCCCC
Q 003907 419 HVHLYKLHRGI-----TSATIQDICFSHYSQWIAIVSS--KGTCHVFVLSPFG 464 (787)
Q Consensus 419 ~~~l~~l~rG~-----~~a~I~slaFSpDg~~LAs~S~--dgTVhIwdl~~~g 464 (787)
..+.++.-+. ....-..++|+|||++|.++.. +++|.|+|+....
T Consensus 120 -~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~ 171 (386)
T 3sjl_D 120 -LPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKA 171 (386)
T ss_dssp -CEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTE
T ss_pred -eEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCc
Confidence 2344443211 0112346999999999998874 6899999998753
No 221
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=97.30 E-value=0.029 Score=57.56 Aligned_cols=100 Identities=9% Similarity=0.033 Sum_probs=60.3
Q ss_pred CceEEEEECCCCcEEEEeccCCCCeEEEEEC----CCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEE
Q 003907 348 AGIVVVKDFVTRAIISQFKAHTSPISALCFD----PSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLY 423 (787)
Q Consensus 348 dG~V~IwDl~s~~~v~~~~aH~~pIsaLaFS----pdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~ 423 (787)
.+.|..||.. ++... +..+......++|+ |+|+.|..+...+..|.+||+... |.. .....+.
T Consensus 152 ~~~l~~~~~~-g~~~~-~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~------g~~-----~~~~~~~ 218 (314)
T 1pjx_A 152 FGSIYCFTTD-GQMIQ-VDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGP------AKI-----ENKKVWG 218 (314)
T ss_dssp CEEEEEECTT-SCEEE-EEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEET------TEE-----EEEEEEE
T ss_pred CCeEEEECCC-CCEEE-eccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCC------Ccc-----ccceEEE
Confidence 3456666655 44332 22333456889999 999766555544556999997411 100 0000111
Q ss_pred EEecccccccEEEEEEccCCCEEEEEeCCCeEEEEeCC
Q 003907 424 KLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLS 461 (787)
Q Consensus 424 ~l~rG~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~ 461 (787)
.+. +.....+..|+|++||+++++...++.|.+|+.+
T Consensus 219 ~~~-~~~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~ 255 (314)
T 1pjx_A 219 HIP-GTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPD 255 (314)
T ss_dssp ECC-CCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTT
T ss_pred ECC-CCCCCCCCceEECCCCCEEEEEcCCCEEEEEcCC
Confidence 111 1110347889999999988888888999999865
No 222
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=97.29 E-value=0.044 Score=57.05 Aligned_cols=63 Identities=17% Similarity=0.211 Sum_probs=43.3
Q ss_pred CeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEe
Q 003907 371 PISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVS 450 (787)
Q Consensus 371 pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~LAs~S 450 (787)
....|+++++|++.++. . + -|.+|+.. | ..+..+... ..+.+++|++|++.|.+++
T Consensus 240 ~pdgi~~d~~G~lwv~~-~-~-gv~~~~~~--------g----------~~~~~~~~~---~~~~~~~f~~d~~~L~it~ 295 (305)
T 3dr2_A 240 LPDGFCVDRGGWLWSSS-G-T-GVCVFDSD--------G----------QLLGHIPTP---GTASNCTFDQAQQRLFITG 295 (305)
T ss_dssp CCCSEEECTTSCEEECC-S-S-EEEEECTT--------S----------CEEEEEECS---SCCCEEEECTTSCEEEEEE
T ss_pred CCCeEEECCCCCEEEec-C-C-cEEEECCC--------C----------CEEEEEECC---CceeEEEEeCCCCEEEEEc
Confidence 34578999999977655 3 3 38889862 3 344444322 2478899999999999998
Q ss_pred CCCeEEE
Q 003907 451 SKGTCHV 457 (787)
Q Consensus 451 ~dgTVhI 457 (787)
.++..++
T Consensus 296 ~~~l~~~ 302 (305)
T 3dr2_A 296 GPCLWML 302 (305)
T ss_dssp TTEEEEE
T ss_pred CCeEEEE
Confidence 8754433
No 223
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=97.27 E-value=0.038 Score=57.82 Aligned_cols=57 Identities=7% Similarity=-0.073 Sum_probs=46.2
Q ss_pred CEEEEEECCCCeEEEEEeCCCcEE--EEEecCCeEEEEe--CCeEEEEECCCCceeEEEEe
Q 003907 173 TAVRFYSFQSHCYEHVLRFRSSVC--MVRCSPRIVAVGL--ATQIYCFDALTLENKFSVLT 229 (787)
Q Consensus 173 ~tVrlWdlktg~~v~tL~f~s~V~--sV~~s~~~LaV~~--~~~I~iwD~~T~e~l~tl~t 229 (787)
..|+.+|+++|+.+.++......+ .|....+.|-+.. ++.+.+||+.|++.+.++..
T Consensus 65 S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~g~~ly~ltw~~~~v~v~D~~t~~~~~ti~~ 125 (262)
T 3nol_A 65 SSIRKVDIESGKTLQQIELGKRYFGEGISDWKDKIVGLTWKNGLGFVWNIRNLRQVRSFNY 125 (262)
T ss_dssp EEEEEECTTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEEEEETTTCCEEEEEEC
T ss_pred ceEEEEECCCCcEEEEEecCCccceeEEEEeCCEEEEEEeeCCEEEEEECccCcEEEEEEC
Confidence 489999999999999999887654 3666666666655 66899999999998888764
No 224
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=97.22 E-value=0.032 Score=58.55 Aligned_cols=56 Identities=5% Similarity=-0.017 Sum_probs=45.2
Q ss_pred CEEEEEECCCCeEEEEEeCCCcEEE--EEecCCeEEEEe--CCeEEEEECCCCceeEEEEe
Q 003907 173 TAVRFYSFQSHCYEHVLRFRSSVCM--VRCSPRIVAVGL--ATQIYCFDALTLENKFSVLT 229 (787)
Q Consensus 173 ~tVrlWdlktg~~v~tL~f~s~V~s--V~~s~~~LaV~~--~~~I~iwD~~T~e~l~tl~t 229 (787)
+.|+.+|+++|+.+.++ +....+. |....+.|-+.. ++.+.+||+.|++.+.++..
T Consensus 75 g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~g~~Ly~ltw~~~~v~V~D~~Tl~~~~ti~~ 134 (268)
T 3nok_A 75 GTLRQLSLESAQPVWME-RLGNIFAEGLASDGERLYQLTWTEGLLFTWSGMPPQRERTTRY 134 (268)
T ss_dssp TEEEECCSSCSSCSEEE-ECTTCCEEEEEECSSCEEEEESSSCEEEEEETTTTEEEEEEEC
T ss_pred CEEEEEECCCCcEEeEE-CCCCcceeEEEEeCCEEEEEEccCCEEEEEECCcCcEEEEEeC
Confidence 46999999999999999 7776543 777776666655 67899999999999888864
No 225
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=97.19 E-value=0.23 Score=49.91 Aligned_cols=89 Identities=13% Similarity=0.065 Sum_probs=54.1
Q ss_pred ceEEEEECCCCcEEE-EeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEec
Q 003907 349 GIVVVKDFVTRAIIS-QFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHR 427 (787)
Q Consensus 349 G~V~IwDl~s~~~v~-~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~r 427 (787)
+.|.+||. +++... .+..+...+.+|+++++|++.++... +..|.+||.. +. ...+.+..
T Consensus 209 ~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~-~~~i~~~~~~--------g~---------~~~~~~~~ 269 (300)
T 2qc5_A 209 NKIGRITT-TGEISEYDIPTPNARPHAITAGKNSEIWFTEWG-ANQIGRITND--------NT---------IQEYQLQT 269 (300)
T ss_dssp TEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEETT-TTEEEEECTT--------SC---------EEEEECCS
T ss_pred CEEEEEcC-CCcEEEEECCCCCCCceEEEECCCCCEEEeccC-CCeEEEECCC--------Cc---------EEEEECCc
Confidence 45666666 333322 23344567889999999997776644 3458888862 21 12222221
Q ss_pred ccccccEEEEEEccCCCEEEEEeCCCeEEEEeC
Q 003907 428 GITSATIQDICFSHYSQWIAIVSSKGTCHVFVL 460 (787)
Q Consensus 428 G~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl 460 (787)
....+.+|++++||++.++.. . .|..|+.
T Consensus 270 --~~~~~~~i~~~~~g~l~v~~~-~-~i~~~~p 298 (300)
T 2qc5_A 270 --ENAEPHGITFGKDGSVWFALK-C-KIGKLNL 298 (300)
T ss_dssp --TTCCCCCEEECTTSCEEEECS-S-EEEEEEE
T ss_pred --cCCccceeEeCCCCCEEEEcc-C-ceEEeCC
Confidence 123578999999998666554 4 6666664
No 226
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=97.19 E-value=0.0055 Score=68.66 Aligned_cols=56 Identities=9% Similarity=-0.129 Sum_probs=44.9
Q ss_pred CEEEEEECCCCeEEEEEeCCCcEEEEEecC--CeEEEEe-----------CCeEEEEECCCCceeEEEEe
Q 003907 173 TAVRFYSFQSHCYEHVLRFRSSVCMVRCSP--RIVAVGL-----------ATQIYCFDALTLENKFSVLT 229 (787)
Q Consensus 173 ~tVrlWdlktg~~v~tL~f~s~V~sV~~s~--~~LaV~~-----------~~~I~iwD~~T~e~l~tl~t 229 (787)
++|.++|+.+++.+.++.....- .|.+++ +.|.|+. ++.|.++|..|++.+.+|..
T Consensus 99 ~~VsVID~~t~~vv~~I~vG~~P-gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v 167 (426)
T 3c75_H 99 TQQFVIDGSTGRILGMTDGGFLP-HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIEL 167 (426)
T ss_dssp EEEEEEETTTTEEEEEEEECSSC-EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEE
T ss_pred CeEEEEECCCCEEEEEEECCCCC-ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEEC
Confidence 58999999999999999754322 788887 6666654 35799999999998888764
No 227
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=97.14 E-value=0.0039 Score=68.19 Aligned_cols=93 Identities=11% Similarity=0.005 Sum_probs=68.3
Q ss_pred eEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEc---------CCCEEEEEeCCCCcccCCCCCCccccCCcce
Q 003907 350 IVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASV---------YGNNINIFRIMPSCMRSGSGNHKYDWNSSHV 420 (787)
Q Consensus 350 ~V~IwDl~s~~~v~~~~aH~~pIsaLaFSpdG~lLATaS~---------dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~ 420 (787)
+|.++|..+++.+.++.....+ .++|||||++|..+.. ++..|.+||+... .
T Consensus 48 ~v~v~D~~t~~~~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~-----------------~ 108 (373)
T 2mad_H 48 QQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTF-----------------L 108 (373)
T ss_pred EEEEEECCCCeEEEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCC-----------------c
Confidence 8999999999999999876666 8999999999998863 2456899998531 2
Q ss_pred EEEEEecc-----cccccEEEEEEccCCCEEEEEeC--CCeEEEEeCCC
Q 003907 421 HLYKLHRG-----ITSATIQDICFSHYSQWIAIVSS--KGTCHVFVLSP 462 (787)
Q Consensus 421 ~l~~l~rG-----~~~a~I~slaFSpDg~~LAs~S~--dgTVhIwdl~~ 462 (787)
.+.++.-+ .+...-..++|||||++|.+++. +++|.++| ..
T Consensus 109 ~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t 156 (373)
T 2mad_H 109 PIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QG 156 (373)
T ss_pred EEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CC
Confidence 23322211 00012457999999999999874 47899999 64
No 228
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=97.07 E-value=0.068 Score=63.17 Aligned_cols=58 Identities=12% Similarity=0.071 Sum_probs=40.5
Q ss_pred CEEEEEECCCCeEEEEEeCC-C--cEEEEEe----cCCeEEEEe-------CCeEEEEECCCCceeEEEEec
Q 003907 173 TAVRFYSFQSHCYEHVLRFR-S--SVCMVRC----SPRIVAVGL-------ATQIYCFDALTLENKFSVLTY 230 (787)
Q Consensus 173 ~tVrlWdlktg~~v~tL~f~-s--~V~sV~~----s~~~LaV~~-------~~~I~iwD~~T~e~l~tl~t~ 230 (787)
+.|.-+|.++|+.+.+.+.. . ..+.+.. ....|+++. ++.|+.||+.|+++++++.+.
T Consensus 131 g~l~AlDa~TG~~~W~~~~~~~~~~~~~~~~sP~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~ 202 (689)
T 1yiq_A 131 GRLEAIDAKTGQRAWSVDTRADHKRSYTITGAPRVVNGKVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTV 202 (689)
T ss_dssp SEEEEEETTTCCEEEEEECCSCTTSCCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESS
T ss_pred CEEEEEECCCCCEeeeecCcCCCCCCccccCCcEEECCEEEEEeCCCccCCCCEEEEEECCCCcEEEEeccc
Confidence 68999999999999888753 1 1111111 234555543 357999999999999998753
No 229
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=97.04 E-value=0.11 Score=53.70 Aligned_cols=57 Identities=9% Similarity=-0.014 Sum_probs=45.4
Q ss_pred CEEEEEECCCCeEEEEEeCCCcEE--EEEecCCeEEEEe--CCeEEEEECCCCceeEEEEe
Q 003907 173 TAVRFYSFQSHCYEHVLRFRSSVC--MVRCSPRIVAVGL--ATQIYCFDALTLENKFSVLT 229 (787)
Q Consensus 173 ~tVrlWdlktg~~v~tL~f~s~V~--sV~~s~~~LaV~~--~~~I~iwD~~T~e~l~tl~t 229 (787)
..|+.+|+++|+.+.++..+...+ .+....+.|-+.. ++.+++||..|++.+.++..
T Consensus 43 S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~~~ly~ltw~~~~v~v~D~~tl~~~~ti~~ 103 (243)
T 3mbr_X 43 SSVRKVDLETGRILQRAEVPPPYFGAGIVAWRDRLIQLTWRNHEGFVYDLATLTPRARFRY 103 (243)
T ss_dssp CEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEEEEETTTTEEEEEEEC
T ss_pred ceEEEEECCCCCEEEEEeCCCCcceeEEEEeCCEEEEEEeeCCEEEEEECCcCcEEEEEeC
Confidence 589999999999999999887653 4455566666554 66899999999998888763
No 230
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=96.99 E-value=0.2 Score=53.22 Aligned_cols=57 Identities=4% Similarity=-0.110 Sum_probs=41.0
Q ss_pred CEEEEEECCCCeEEEEEeCCCcEE------EEEecCCeEEEEe-CCeEEEEECCCCceeEEEEe
Q 003907 173 TAVRFYSFQSHCYEHVLRFRSSVC------MVRCSPRIVAVGL-ATQIYCFDALTLENKFSVLT 229 (787)
Q Consensus 173 ~tVrlWdlktg~~v~tL~f~s~V~------sV~~s~~~LaV~~-~~~I~iwD~~T~e~l~tl~t 229 (787)
+.|..+|.++|+.+........+. ........|.++. ++.|+.+|+.+++.+++...
T Consensus 153 g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~v~~g~~~g~l~~~d~~tG~~~w~~~~ 216 (376)
T 3q7m_A 153 GQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTAFGAAVVGGDNGRVSAVLMEQGQMIWQQRI 216 (376)
T ss_dssp SEEEEEETTTCCEEEEEECCC-----CCCCCCEEETTEEEECCTTTEEEEEETTTCCEEEEEEC
T ss_pred CeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEECCEEEEEcCCCEEEEEECCCCcEEEEEec
Confidence 579999999999999888765442 1222345666655 56799999999999888763
No 231
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=96.99 E-value=0.002 Score=70.77 Aligned_cols=94 Identities=10% Similarity=-0.060 Sum_probs=71.0
Q ss_pred eEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEE---------cCCCEEEEEeCCCCcccCCCCCCccccCCcce
Q 003907 350 IVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTAS---------VYGNNINIFRIMPSCMRSGSGNHKYDWNSSHV 420 (787)
Q Consensus 350 ~V~IwDl~s~~~v~~~~aH~~pIsaLaFSpdG~lLATaS---------~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~ 420 (787)
.|.+.|..+++.+.++..-..| .++|+|||++|..+. +++..|.+||+.+ + .
T Consensus 47 ~vsvID~~t~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T-------~----------~ 107 (368)
T 1mda_H 47 ENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVT-------F----------L 107 (368)
T ss_dssp EEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTT-------C----------C
T ss_pred eEEEEECCCCeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCC-------C----------C
Confidence 8999999999999999876678 799999999998887 2355799999865 2 3
Q ss_pred EEEEEecc-cc----cccEEEEEEccCCCEEEEEeC--CCeEEE--EeCCC
Q 003907 421 HLYKLHRG-IT----SATIQDICFSHYSQWIAIVSS--KGTCHV--FVLSP 462 (787)
Q Consensus 421 ~l~~l~rG-~~----~a~I~slaFSpDg~~LAs~S~--dgTVhI--wdl~~ 462 (787)
.+.++.-| .. ......++|||||++|.++.. ..++.+ +|+..
T Consensus 108 vv~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t 158 (368)
T 1mda_H 108 PIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD 158 (368)
T ss_dssp EEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE
T ss_pred EEEEEECCCccccccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh
Confidence 45555322 00 012346999999999999874 467888 88765
No 232
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=96.91 E-value=0.028 Score=65.26 Aligned_cols=218 Identities=12% Similarity=0.067 Sum_probs=126.1
Q ss_pred CEEEEEECCCCeEEEEEeCC--CcEEEEEe-c-C--CeEEEEe-------------------CCeEEEEECCCCceeEEE
Q 003907 173 TAVRFYSFQSHCYEHVLRFR--SSVCMVRC-S-P--RIVAVGL-------------------ATQIYCFDALTLENKFSV 227 (787)
Q Consensus 173 ~tVrlWdlktg~~v~tL~f~--s~V~sV~~-s-~--~~LaV~~-------------------~~~I~iwD~~T~e~l~tl 227 (787)
++|.+.|+++.+++..++.+ .....+++ + + ++|.++. ++.+.+.|..|++..+++
T Consensus 112 ~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtvID~~t~~v~~qI 191 (595)
T 1fwx_A 112 TRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAVDADKWEVAWQV 191 (595)
T ss_dssp TEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEEEETTTTEEEEEE
T ss_pred CEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEEEEECCCCeEEEEE
Confidence 68999999999999977654 46788886 3 3 6777663 125899999999999998
Q ss_pred EecCCcccCCCCccccccccceeEEcc--ceEEEecCCceecCcceeccccCCCCCcCCCcCCCCC-ceeEeeehhhhhh
Q 003907 228 LTYPVPQLAGQGAVGINVGYGPMAVGP--RWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGS-SLVARYAMEHSKQ 304 (787)
Q Consensus 228 ~t~p~p~~~~~~~~~~~~~~~~lAlsp--r~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~sp~~g-~lva~~a~d~sk~ 304 (787)
....+|+ -++++| +|+..+.... +.+.. .+..+.. .-. ..|.. + +.
T Consensus 192 ~Vgg~pd--------------~~~~spdGk~~~vt~~~s---e~~~~-i~~~~~~--------~~d~v~V~~--~---~~ 240 (595)
T 1fwx_A 192 LVSGNLD--------------NCDADYEGKWAFSTSYNS---EKGMT-LPEMTAA--------EMDHIVVFN--I---AE 240 (595)
T ss_dssp EESSCCC--------------CEEECSSSSEEEEEESCT---TCCSS-HHHHTCC--------SEEEEEEEE--H---HH
T ss_pred EeCCCcc--------------ceEECCCCCEEEEEecCc---ccCcc-hhhcccc--------ccceEEEee--c---cc
Confidence 8533542 367777 6665554321 00000 0000000 000 00000 0 00
Q ss_pred hhcccceeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECCC--CcE-EEEeccCCCCeEEEEECCCC
Q 003907 305 FAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVT--RAI-ISQFKAHTSPISALCFDPSG 381 (787)
Q Consensus 305 la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s--~~~-v~~~~aH~~pIsaLaFSpdG 381 (787)
... ..+++ +. ..-+.|.|.|..+ ++. +..+..-. ...++.|+|||
T Consensus 241 ~~~------------~v~~G-----------k~--------~~i~~V~VID~~~~~~~~~~~~Ipvg~-~PhGv~~sPDG 288 (595)
T 1fwx_A 241 IEK------------AIAAG-----------DY--------QELNGVKVVDGRKEASSLFTRYIPIAN-NPHGCNMAPDK 288 (595)
T ss_dssp HHH------------HHHHT-----------CS--------EEETTEEEEECSGGGCCSSEEEEEEES-SCCCEEECTTS
T ss_pred eeE------------eccCC-----------Ce--------eEECcEEEEeCcccCCceeEEEEecCC-CceEEEEcCCC
Confidence 000 00000 00 0014599999998 555 56665432 33578999999
Q ss_pred CEEEEEEcCCCEEEEEeCCCCcc-cCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEeC
Q 003907 382 TLLVTASVYGNNINIFRIMPSCM-RSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVL 460 (787)
Q Consensus 382 ~lLATaS~dG~~IrVWdi~~~~~-~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl 460 (787)
+++..++.....|.|+|+..... .+ |. ++.......++.-|. .-..++|+|||....+.-.|++|-+|++
T Consensus 289 k~v~V~~~~s~~VsVid~~~~~~~~~--~~----l~~~~~v~~~v~vG~---gP~h~aF~~dG~aY~t~~ldsqV~kwdi 359 (595)
T 1fwx_A 289 KHLCVAGKLSPTVTVLDVTRFDAVFY--EN----ADPRSAVVAEPELGL---GPLHTAFDGRGNAYTSLFLDSQVVKWNI 359 (595)
T ss_dssp SEEEEECTTSSBEEEEEGGGHHHHHH--SC----CCGGGGEEECCBCCS---CEEEEEECTTSEEEEEETTTTEEEEEEH
T ss_pred CEEEEeCCCCCeEEEEECcccccccc--cc----cCcccceEEEcCCCC---CcceEEECCCCeEEEEEecCCcEEEEEh
Confidence 99999888777899999863100 00 00 011112333443332 3678999999944455567999999999
Q ss_pred CC
Q 003907 461 SP 462 (787)
Q Consensus 461 ~~ 462 (787)
+.
T Consensus 360 ~~ 361 (595)
T 1fwx_A 360 ED 361 (595)
T ss_dssp HH
T ss_pred hH
Confidence 76
No 233
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=96.86 E-value=0.061 Score=57.15 Aligned_cols=79 Identities=5% Similarity=0.040 Sum_probs=48.4
Q ss_pred CeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCc-ceEEEEE-ecccccccEEEEEEccCCCEEEE
Q 003907 371 PISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSS-HVHLYKL-HRGITSATIQDICFSHYSQWIAI 448 (787)
Q Consensus 371 pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s-~~~l~~l-~rG~~~a~I~slaFSpDg~~LAs 448 (787)
.++.|+|||||+.|..++..++.+..++.... .+ +... ... ...+..+ .+| ....|++++||+++++
T Consensus 196 ~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~--~~--~~~~---~~~~~~~~~~~g~~g----~pdgia~d~~G~l~va 264 (343)
T 2qe8_A 196 GVNGIVLDAENEWLYLSPMHSTSMYRIKSADL--SN--LQLT---DAELGSKIERYSEKP----ICDGISIDKDHNIYVG 264 (343)
T ss_dssp CEEEEEECTTSCEEEEEESSCSEEEEEEHHHH--TC--TTCC---HHHHHTTCEEEEECC----SCSCEEECTTCCEEEE
T ss_pred ccceeEeccCCCEEEEEeCCCCeEEEEEHHHh--cC--CCCC---hhhhhcceEecccCC----CCceEEECCCCCEEEE
Confidence 36789999999999988887764444432110 00 0000 000 0000111 122 2456999999999999
Q ss_pred EeCCCeEEEEeC
Q 003907 449 VSSKGTCHVFVL 460 (787)
Q Consensus 449 ~S~dgTVhIwdl 460 (787)
...+++|.+|+.
T Consensus 265 ~~~~~~V~~~d~ 276 (343)
T 2qe8_A 265 DLAHSAIGVITS 276 (343)
T ss_dssp EGGGTEEEEEET
T ss_pred ccCCCeEEEEEC
Confidence 999999999997
No 234
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=96.75 E-value=0.77 Score=48.65 Aligned_cols=93 Identities=14% Similarity=0.195 Sum_probs=58.9
Q ss_pred cCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEE
Q 003907 345 MDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYK 424 (787)
Q Consensus 345 ~~~dG~V~IwDl~s~~~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~ 424 (787)
+..+|.+..+|..+++.+..... .....+..+ +..|..++.+|. +..+|..+ | ..+++
T Consensus 245 ~~~~g~l~~~d~~tG~~~w~~~~--~~~~~~~~~--~~~l~~~~~~g~-l~~~d~~t-------G----------~~~w~ 302 (376)
T 3q7m_A 245 LAYNGNLTALDLRSGQIMWKREL--GSVNDFIVD--GNRIYLVDQNDR-VMALTIDG-------G----------VTLWT 302 (376)
T ss_dssp ECTTSCEEEEETTTCCEEEEECC--CCEEEEEEE--TTEEEEEETTCC-EEEEETTT-------C----------CEEEE
T ss_pred EecCcEEEEEECCCCcEEeeccC--CCCCCceEE--CCEEEEEcCCCe-EEEEECCC-------C----------cEEEe
Confidence 34678999999999988766543 334455543 455666666565 88899754 3 34555
Q ss_pred EecccccccEEEEEEccCCCEEEEEeCCCeEEEEeCCC
Q 003907 425 LHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSP 462 (787)
Q Consensus 425 l~rG~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~~ 462 (787)
.... ....+..... .+..|.+++.+|.+++||..+
T Consensus 303 ~~~~-~~~~~~~~~~--~~~~l~v~~~~g~l~~~d~~t 337 (376)
T 3q7m_A 303 QSDL-LHRLLTSPVL--YNGNLVVGDSEGYLHWINVED 337 (376)
T ss_dssp ECTT-TTSCCCCCEE--ETTEEEEECTTSEEEEEETTT
T ss_pred eccc-CCCcccCCEE--ECCEEEEEeCCCeEEEEECCC
Confidence 4311 1111222222 256788999999999999875
No 235
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=96.66 E-value=0.71 Score=47.67 Aligned_cols=92 Identities=12% Similarity=0.009 Sum_probs=54.9
Q ss_pred ceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCC-----CEEEEEeCCCCcccCCCCCCccccCCcceEEE
Q 003907 349 GIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYG-----NNINIFRIMPSCMRSGSGNHKYDWNSSHVHLY 423 (787)
Q Consensus 349 G~V~IwDl~s~~~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG-----~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~ 423 (787)
+.|..+|..+++..... +....+.++|+|||+.|..+.... ..|.+|++... + .....
T Consensus 169 ~~v~~~d~~~g~~~~~~--~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~------~---------l~~~~ 231 (305)
T 3dr2_A 169 HSVYRLPPDGSPLQRMA--DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDG------A---------LHDRR 231 (305)
T ss_dssp EEEEEECSSSCCCEEEE--EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETT------E---------EEEEE
T ss_pred CeEEEEcCCCCcEEEEe--cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCC------C---------ccCCe
Confidence 56777777666543332 334567899999999887776642 56899987431 0 00111
Q ss_pred EEecccccccEEEEEEccCCCEEEEEeCCCeEEEEeC
Q 003907 424 KLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVL 460 (787)
Q Consensus 424 ~l~rG~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl 460 (787)
.+... .......|++++||++. +++.+ .|++|+.
T Consensus 232 ~~~~~-~~~~pdgi~~d~~G~lw-v~~~~-gv~~~~~ 265 (305)
T 3dr2_A 232 HFASV-PDGLPDGFCVDRGGWLW-SSSGT-GVCVFDS 265 (305)
T ss_dssp EEECC-SSSCCCSEEECTTSCEE-ECCSS-EEEEECT
T ss_pred EEEEC-CCCCCCeEEECCCCCEE-EecCC-cEEEECC
Confidence 11110 11234568999999944 44444 4888875
No 236
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=96.57 E-value=0.095 Score=61.80 Aligned_cols=58 Identities=16% Similarity=0.022 Sum_probs=42.9
Q ss_pred CEEEEEECCCCeEEEEEeCCCc------------EEEEEecCCeEEEEe-CCeEEEEECCCCceeEEEEec
Q 003907 173 TAVRFYSFQSHCYEHVLRFRSS------------VCMVRCSPRIVAVGL-ATQIYCFDALTLENKFSVLTY 230 (787)
Q Consensus 173 ~tVrlWdlktg~~v~tL~f~s~------------V~sV~~s~~~LaV~~-~~~I~iwD~~T~e~l~tl~t~ 230 (787)
+.|.-+|.++|+.+.+++.... ...+......|.++. ++.|+.+|+.|++.+++....
T Consensus 87 ~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~~~~~v~v~~~dg~l~alD~~tG~~~W~~~~~ 157 (677)
T 1kb0_A 87 SVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALWKGKVYVGAWDGRLIALDAATGKEVWHQNTF 157 (677)
T ss_dssp GCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEEETTEEEEECTTSEEEEEETTTCCEEEEEETT
T ss_pred CeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceEECCEEEEEcCCCEEEEEECCCCCEEeeecCC
Confidence 4788899999999999876531 123344455666654 678999999999999888753
No 237
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=96.52 E-value=0.15 Score=52.39 Aligned_cols=91 Identities=14% Similarity=0.121 Sum_probs=52.8
Q ss_pred ceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecc
Q 003907 349 GIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRG 428 (787)
Q Consensus 349 G~V~IwDl~s~~~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG 428 (787)
+.+..+|. +++.+..+......+.++.++++|++.+ ++.+|. |..||. . | ..++.+.-+
T Consensus 235 ~gl~~~~~-~g~~~~~~~~~~~~~~~~~~~~~g~l~v-~t~~gg-l~~~d~-~-------g----------~~~~~~~~~ 293 (330)
T 3hxj_A 235 GHLYAINP-DGTEKWRFKTGKRIESSPVIGNTDTIYF-GSYDGH-LYAINP-D-------G----------TEKWNFETG 293 (330)
T ss_dssp TEEEEECT-TSCEEEEEECSSCCCSCCEECTTSCEEE-ECTTCE-EEEECT-T-------S----------CEEEEEECS
T ss_pred CeEEEECC-CCCEeEEeeCCCCccccceEcCCCeEEE-ecCCCC-EEEECC-C-------C----------cEEEEEEcC
Confidence 34444442 3344444444444445567787887664 555454 777774 2 3 244444322
Q ss_pred cccccEEEEEEccCCCEEEEEeCCCeEEEEeCCCC
Q 003907 429 ITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPF 463 (787)
Q Consensus 429 ~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~~~ 463 (787)
...+.++.+.+||+ |..++.+|.+++......
T Consensus 294 --~~~~~~~~~d~~g~-l~~gt~~G~~~~~~~~~~ 325 (330)
T 3hxj_A 294 --SWIIATPVIDENGT-IYFGTRNGKFYALFNLEH 325 (330)
T ss_dssp --SCCCSCCEECTTCC-EEEECTTSCEEEEEC---
T ss_pred --CccccceEEcCCCE-EEEEcCCCeEEEEecccc
Confidence 23467788888887 566889999999877643
No 238
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=96.48 E-value=0.39 Score=50.24 Aligned_cols=95 Identities=9% Similarity=-0.021 Sum_probs=62.8
Q ss_pred CCceEEEEECCCCcEEEEeccC-CCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEE
Q 003907 347 NAGIVVVKDFVTRAIISQFKAH-TSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKL 425 (787)
Q Consensus 347 ~dG~V~IwDl~s~~~v~~~~aH-~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l 425 (787)
.++.+.++|..+.+.+.+|..- ... ..+++||+.|..+.. +..|.++|..+. ..+..+
T Consensus 84 ~~~~v~viD~~t~~v~~~i~~g~~~g---~glt~Dg~~l~vs~g-s~~l~viD~~t~-----------------~v~~~I 142 (266)
T 2iwa_A 84 LKNIGFIYDRRTLSNIKNFTHQMKDG---WGLATDGKILYGSDG-TSILYEIDPHTF-----------------KLIKKH 142 (266)
T ss_dssp TCSEEEEEETTTTEEEEEEECCSSSC---CEEEECSSSEEEECS-SSEEEEECTTTC-----------------CEEEEE
T ss_pred cCCEEEEEECCCCcEEEEEECCCCCe---EEEEECCCEEEEECC-CCeEEEEECCCC-----------------cEEEEE
Confidence 4678999999999999998643 222 335567877776654 556999997542 233333
Q ss_pred ecc---cccccEEEEEEccCCCEEEEEeCCCeEEEEeCCCC
Q 003907 426 HRG---ITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPF 463 (787)
Q Consensus 426 ~rG---~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~~~ 463 (787)
.-| .....+..+.|. ||+..+..-.+++|.+-|..+.
T Consensus 143 ~Vg~~~~p~~~~nele~~-dg~lyvn~~~~~~V~vID~~tg 182 (266)
T 2iwa_A 143 NVKYNGHRVIRLNELEYI-NGEVWANIWQTDCIARISAKDG 182 (266)
T ss_dssp ECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEEETTTC
T ss_pred EECCCCcccccceeEEEE-CCEEEEecCCCCeEEEEECCCC
Confidence 322 111236788888 8866666657888999887653
No 239
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=96.42 E-value=0.65 Score=48.50 Aligned_cols=57 Identities=4% Similarity=-0.007 Sum_probs=48.3
Q ss_pred CEEEEEECCCCeEEEEEeCCCcEEEEEecCCeEEEEe-CCeEEEEECCCCceeEEEEe
Q 003907 173 TAVRFYSFQSHCYEHVLRFRSSVCMVRCSPRIVAVGL-ATQIYCFDALTLENKFSVLT 229 (787)
Q Consensus 173 ~tVrlWdlktg~~v~tL~f~s~V~sV~~s~~~LaV~~-~~~I~iwD~~T~e~l~tl~t 229 (787)
+++.+||.++.+.+.++.+...=+.+....+.|.++. .++|+++|..|++.+.++..
T Consensus 107 ~~v~v~D~~t~~~~~ti~~~~eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V 164 (262)
T 3nol_A 107 GLGFVWNIRNLRQVRSFNYDGEGWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITV 164 (262)
T ss_dssp SEEEEEETTTCCEEEEEECSSCCCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEEC
T ss_pred CEEEEEECccCcEEEEEECCCCceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEe
Confidence 6899999999999999998776567777777777765 56799999999998888864
No 240
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=96.37 E-value=0.31 Score=51.09 Aligned_cols=57 Identities=9% Similarity=-0.128 Sum_probs=49.1
Q ss_pred CEEEEEECCCCeEEEEEeCCCcEEEEEecCCeEEEEe-CCeEEEEECCCCceeEEEEe
Q 003907 173 TAVRFYSFQSHCYEHVLRFRSSVCMVRCSPRIVAVGL-ATQIYCFDALTLENKFSVLT 229 (787)
Q Consensus 173 ~tVrlWdlktg~~v~tL~f~s~V~sV~~s~~~LaV~~-~~~I~iwD~~T~e~l~tl~t 229 (787)
+++.+||.++.+.+.++.+...-+.+....+.|.++. .++|+++|..|++.+.++..
T Consensus 116 ~~v~V~D~~Tl~~~~ti~~~~eGwGLt~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V 173 (268)
T 3nok_A 116 GLLFTWSGMPPQRERTTRYSGEGWGLCYWNGKLVRSDGGTMLTFHEPDGFALVGAVQV 173 (268)
T ss_dssp CEEEEEETTTTEEEEEEECSSCCCCEEEETTEEEEECSSSEEEEECTTTCCEEEEEEC
T ss_pred CEEEEEECCcCcEEEEEeCCCceeEEecCCCEEEEECCCCEEEEEcCCCCeEEEEEEe
Confidence 6899999999999999998776677778788888765 56899999999999888874
No 241
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=96.32 E-value=0.18 Score=59.65 Aligned_cols=57 Identities=23% Similarity=0.078 Sum_probs=41.8
Q ss_pred CEEEEEECCCCeEEEEEeCCCc-----------E-EEEEecCCeEEEEe-CCeEEEEECCCCceeEEEEe
Q 003907 173 TAVRFYSFQSHCYEHVLRFRSS-----------V-CMVRCSPRIVAVGL-ATQIYCFDALTLENKFSVLT 229 (787)
Q Consensus 173 ~tVrlWdlktg~~v~tL~f~s~-----------V-~sV~~s~~~LaV~~-~~~I~iwD~~T~e~l~tl~t 229 (787)
+.|.-+|.++|+.+.+++.... + ..+......|.++. ++.|+.+|+.|++.+++...
T Consensus 80 ~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~v~~~dg~l~AlDa~TG~~~W~~~~ 149 (689)
T 1yiq_A 80 SVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAVWKGKVYVGVLDGRLEAIDAKTGQRAWSVDT 149 (689)
T ss_dssp GCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEETTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred CeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEEECCEEEEEccCCEEEEEECCCCCEeeeecC
Confidence 4688999999999999865421 0 12233455666654 67899999999999988765
No 242
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=96.00 E-value=1.9 Score=50.49 Aligned_cols=58 Identities=14% Similarity=0.012 Sum_probs=40.5
Q ss_pred CEEEEEECCCCeEEEEEeCCC-----cEE-EEEecCCeEEEEe-------CCeEEEEECCCCceeEEEEec
Q 003907 173 TAVRFYSFQSHCYEHVLRFRS-----SVC-MVRCSPRIVAVGL-------ATQIYCFDALTLENKFSVLTY 230 (787)
Q Consensus 173 ~tVrlWdlktg~~v~tL~f~s-----~V~-sV~~s~~~LaV~~-------~~~I~iwD~~T~e~l~tl~t~ 230 (787)
+.|.-+|.++|+.+.+++... .+. .-......|.++. ++.|+.||+.|++.++++...
T Consensus 127 g~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~ 197 (668)
T 1kv9_A 127 GRLIALDAKTGKAIWSQQTTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTV 197 (668)
T ss_dssp SEEEEEETTTCCEEEEEECSCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESS
T ss_pred CEEEEEECCCCCEeeeeccCCCCCcceecCCCEEECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEeccc
Confidence 589999999999999887531 111 0111235555553 257999999999999998753
No 243
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=95.93 E-value=0.037 Score=65.04 Aligned_cols=117 Identities=8% Similarity=-0.001 Sum_probs=70.7
Q ss_pred cCCcccccccccc-ccCCCceEEEEECCCCcEEEE-eccCCCCeEEEEECCCCCEEEEEEcCC------------CEEEE
Q 003907 331 PNSVWKVGRHAGA-DMDNAGIVVVKDFVTRAIISQ-FKAHTSPISALCFDPSGTLLVTASVYG------------NNINI 396 (787)
Q Consensus 331 ~s~~~~~~~~~~~-s~~~dG~V~IwDl~s~~~v~~-~~aH~~pIsaLaFSpdG~lLATaS~dG------------~~IrV 396 (787)
++++++....... .+....+|+|||+.+++.+.. +... ....++|+ ||+.|+.++.++ ..|.+
T Consensus 136 ~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~--k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~ 212 (693)
T 3iuj_A 136 FSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPLKDV--KFSGISWL-GNEGFFYSSYDKPDGSELSARTDQHKVYF 212 (693)
T ss_dssp ECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEEEEE--ESCCCEEE-TTTEEEEEESSCCC-------CCCCEEEE
T ss_pred ECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccccCCc--eeccEEEe-CCCEEEEEEecCcccccccccCCCcEEEE
Confidence 4445544333222 233346899999999986543 2211 13567899 999999888763 34888
Q ss_pred EeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCC----CeEEEEeCCCCC
Q 003907 397 FRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSK----GTCHVFVLSPFG 464 (787)
Q Consensus 397 Wdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~LAs~S~d----gTVhIwdl~~~g 464 (787)
|++.... .....+++.. +.+...+.+++|||||++|+..+.+ ..++++++....
T Consensus 213 ~~lgt~~-------------~~~~~v~~~~-~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~ 270 (693)
T 3iuj_A 213 HRLGTAQ-------------EDDRLVFGAI-PAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQEN 270 (693)
T ss_dssp EETTSCG-------------GGCEEEESCS-GGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTT
T ss_pred EECCCCc-------------ccceEEEecC-CCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCC
Confidence 8874310 0012333321 1012236789999999999776543 478999987643
No 244
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=95.86 E-value=0.46 Score=55.78 Aligned_cols=57 Identities=19% Similarity=-0.051 Sum_probs=41.7
Q ss_pred CEEEEEECCCCeEEEEEeCCCcE------------EEEEecCCeEEEEe-CCeEEEEECCCCceeEEEEe
Q 003907 173 TAVRFYSFQSHCYEHVLRFRSSV------------CMVRCSPRIVAVGL-ATQIYCFDALTLENKFSVLT 229 (787)
Q Consensus 173 ~tVrlWdlktg~~v~tL~f~s~V------------~sV~~s~~~LaV~~-~~~I~iwD~~T~e~l~tl~t 229 (787)
+.|.-+|.++|+.+.+++..... ..+......|.++. +..|+.+|+.|++.+++...
T Consensus 76 ~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg~l~alD~~tG~~~W~~~~ 145 (668)
T 1kv9_A 76 SRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVALWGDKVYVGTLDGRLIALDAKTGKAIWSQQT 145 (668)
T ss_dssp GEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEEBTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred CeEEEEECCCChhceEECCCCCccccccccccCCccceEEECCEEEEEcCCCEEEEEECCCCCEeeeecc
Confidence 47889999999999988654211 12233445566654 67899999999999988865
No 245
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=95.84 E-value=0.0025 Score=69.23 Aligned_cols=92 Identities=10% Similarity=0.094 Sum_probs=40.1
Q ss_pred CCceEEEEECCCCcEEEEeccCCCC-eE-EEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEE
Q 003907 347 NAGIVVVKDFVTRAIISQFKAHTSP-IS-ALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYK 424 (787)
Q Consensus 347 ~dG~V~IwDl~s~~~v~~~~aH~~p-Is-aLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~ 424 (787)
.+|.|..||..+++.+..+..+... +. +.+++ ++..|++++.+| .|..||..+ | ..+++
T Consensus 57 ~dg~l~a~d~~tG~~~w~~~~~~~~~~~~sp~~~-~~~~v~~g~~dg-~v~a~D~~t-------G----------~~~w~ 117 (369)
T 2hz6_A 57 NDGSLYTLGSKNNEGLTKLPFTIPELVQASPCRS-SDGILYMGKKQD-IWYVIDLLT-------G----------EKQQT 117 (369)
T ss_dssp TTCCEEEC-----CCSEECSCCHHHHHTTCSCC------CCCCEEEE-EEEEECCC------------------------
T ss_pred CCCEEEEEECCCCceeeeeeccCccccccCceEe-cCCEEEEEeCCC-EEEEEECCC-------C----------cEEEE
Confidence 5778888888887766555433210 10 11112 344566677656 489999864 4 34555
Q ss_pred EecccccccEEEEEEccCCCEEEEEeCCCeEEEEeCCCC
Q 003907 425 LHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPF 463 (787)
Q Consensus 425 l~rG~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~~~ 463 (787)
+..+. ...++|++..|++++.|++++.||....
T Consensus 118 ~~~~~------~~~~~p~~~~v~~~~~dg~v~a~d~~tG 150 (369)
T 2hz6_A 118 LSSAF------ADSLSPSTSLLYLGRTEYTITMYDTKTR 150 (369)
T ss_dssp ---------------------EEEEEEEEEEECCCSSSS
T ss_pred ecCCC------cccccccCCEEEEEecCCEEEEEECCCC
Confidence 43321 2456789999999999999999998753
No 246
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=95.82 E-value=0.54 Score=54.17 Aligned_cols=25 Identities=4% Similarity=-0.076 Sum_probs=19.7
Q ss_pred EEccCCCEEEEEeCCCeEEEEeCCC
Q 003907 438 CFSHYSQWIAIVSSKGTCHVFVLSP 462 (787)
Q Consensus 438 aFSpDg~~LAs~S~dgTVhIwdl~~ 462 (787)
.+...+..|.+++.|++++.||..+
T Consensus 470 ~~~t~gg~v~~g~~dg~l~a~D~~t 494 (571)
T 2ad6_A 470 TLYTKGGLVWYATLDGYLKALDNKD 494 (571)
T ss_dssp CEEETTTEEEEECTTSEEEEEETTT
T ss_pred eEEECCCEEEEEcCCCeEEEEECCC
Confidence 3444567788899999999999876
No 247
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=95.67 E-value=1.5 Score=47.62 Aligned_cols=100 Identities=12% Similarity=0.148 Sum_probs=61.6
Q ss_pred CceEEEEEC-------CCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcce
Q 003907 348 AGIVVVKDF-------VTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHV 420 (787)
Q Consensus 348 dG~V~IwDl-------~s~~~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~ 420 (787)
+|.+..|++ .+.+.+++|.-- +.+-.+..++....|..+-++ .-|..++..+. ... ...
T Consensus 152 ~G~~~q~~l~~~~~g~~~~~lVR~f~lg-sq~EgcvvDd~~g~Lyv~eEd-~GIw~~da~p~--~~~----------~~~ 217 (355)
T 3amr_A 152 EGEFEQYELKADKNGYISGKKVRAFKMN-SQTEGMAADDEYGRLYIAEED-EAIWKFSAEPD--GGS----------NGT 217 (355)
T ss_dssp SSEEEEEEEEECTTSCEEEEEEEEEECS-SCEEEEEEETTTTEEEEEETT-TEEEEEECSTT--SCS----------CCE
T ss_pred CCeEEEEEEEeCCCCcccceEEEEecCC-CCcceEEEcCCCCeEEEeccc-ceEEEEeCCcC--CCC----------Cce
Confidence 466666665 233567777654 467788888877777778774 44555555442 100 112
Q ss_pred EEEEEecccccccEEEEEE--ccCCC-EEEEEe-CCCeEEEEeCC
Q 003907 421 HLYKLHRGITSATIQDICF--SHYSQ-WIAIVS-SKGTCHVFVLS 461 (787)
Q Consensus 421 ~l~~l~rG~~~a~I~slaF--SpDg~-~LAs~S-~dgTVhIwdl~ 461 (787)
.+..+..+...+.+-.|++ .+|++ ||.+++ .+.+.+|||..
T Consensus 218 ~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~ 262 (355)
T 3amr_A 218 VIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQ 262 (355)
T ss_dssp EEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESS
T ss_pred EEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECC
Confidence 3333322333456888888 67777 777777 67899999986
No 248
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=95.56 E-value=0.23 Score=57.72 Aligned_cols=98 Identities=15% Similarity=0.170 Sum_probs=56.9
Q ss_pred cCCCceEEEEECCCCc------------EEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCc
Q 003907 345 MDNAGIVVVKDFVTRA------------IISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHK 412 (787)
Q Consensus 345 ~~~dG~V~IwDl~s~~------------~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~ 412 (787)
...+.+|.++|+.+.+ .+.++..-.+| ..++|+|+| .+.+...-+..|-+||+.... +...|.
T Consensus 295 ~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG~gP-~h~aF~~dG-~aY~t~~ldsqV~kwdi~~a~-~~~~g~-- 369 (595)
T 1fwx_A 295 GKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGP-LHTAFDGRG-NAYTSLFLDSQVVKWNIEDAI-RAYAGE-- 369 (595)
T ss_dssp CTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBCCSCE-EEEEECTTS-EEEEEETTTTEEEEEEHHHHH-HHHHTC--
T ss_pred CCCCCeEEEEECcccccccccccCcccceEEEcCCCCCc-ceEEECCCC-eEEEEEecCCcEEEEEhhHhh-hhhccc--
Confidence 3456788889988652 55666554444 678999999 666666667779999985310 000000
Q ss_pred cccCCcceEEEEEecccccccE---EEEEEccCCCEEEEEeC
Q 003907 413 YDWNSSHVHLYKLHRGITSATI---QDICFSHYSQWIAIVSS 451 (787)
Q Consensus 413 ~~~~~s~~~l~~l~rG~~~a~I---~slaFSpDg~~LAs~S~ 451 (787)
.....+.++.-+...... ..++++|||+||.++..
T Consensus 370 ----~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk 407 (595)
T 1fwx_A 370 ----KVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSK 407 (595)
T ss_dssp ----SCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEES
T ss_pred ----ccceeEEEeecccccccceeccceEeCCCCCEEEEcCC
Confidence 001234444433221111 12356899999998853
No 249
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=95.07 E-value=3.7 Score=42.29 Aligned_cols=57 Identities=12% Similarity=0.046 Sum_probs=48.6
Q ss_pred CEEEEEECCCCeEEEEEeCCCcEEEEEecCCeEEEEe-CCeEEEEECCCCceeEEEEe
Q 003907 173 TAVRFYSFQSHCYEHVLRFRSSVCMVRCSPRIVAVGL-ATQIYCFDALTLENKFSVLT 229 (787)
Q Consensus 173 ~tVrlWdlktg~~v~tL~f~s~V~sV~~s~~~LaV~~-~~~I~iwD~~T~e~l~tl~t 229 (787)
+++.+||.++.+.+.++.+...=+.+....+.|.++. .++|+++|..|++.+.++..
T Consensus 85 ~~v~v~D~~tl~~~~ti~~~~~Gwglt~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V 142 (243)
T 3mbr_X 85 HEGFVYDLATLTPRARFRYPGEGWALTSDDSHLYMSDGTAVIRKLDPDTLQQVGSIKV 142 (243)
T ss_dssp SEEEEEETTTTEEEEEEECSSCCCEEEECSSCEEEECSSSEEEEECTTTCCEEEEEEC
T ss_pred CEEEEEECCcCcEEEEEeCCCCceEEeeCCCEEEEECCCCeEEEEeCCCCeEEEEEEE
Confidence 6899999999999999998876678877777777765 45799999999999888874
No 250
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=94.29 E-value=4.9 Score=40.26 Aligned_cols=71 Identities=10% Similarity=0.008 Sum_probs=43.8
Q ss_pred CCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEE
Q 003907 370 SPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIV 449 (787)
Q Consensus 370 ~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~LAs~ 449 (787)
..-..|+|+|++..|..+....+.|.++|... .....+..+. .....|++. +.+|..+
T Consensus 167 ~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g------------------~~~~~~~~~~--~~P~gi~~d--~~~lyva 224 (267)
T 1npe_A 167 GLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQ------------------PGRRKVLEGL--QYPFAVTSY--GKNLYYT 224 (267)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTE------------------EEEEEEEECC--CSEEEEEEE--TTEEEEE
T ss_pred CCCcEEEEcCCCCEEEEEECCCCEEEEEecCC------------------CceEEEecCC--CCceEEEEe--CCEEEEE
Confidence 34578999999887777777667799999732 1122222221 124566654 4555555
Q ss_pred e-CCCeEEEEeCCC
Q 003907 450 S-SKGTCHVFVLSP 462 (787)
Q Consensus 450 S-~dgTVhIwdl~~ 462 (787)
. ..+.|.+++...
T Consensus 225 ~~~~~~v~~~d~~~ 238 (267)
T 1npe_A 225 DWKTNSVIAMDLAI 238 (267)
T ss_dssp ETTTTEEEEEETTT
T ss_pred ECCCCeEEEEeCCC
Confidence 4 568888888764
No 251
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=94.13 E-value=1.1 Score=51.65 Aligned_cols=85 Identities=20% Similarity=0.352 Sum_probs=54.1
Q ss_pred CCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEe
Q 003907 347 NAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLH 426 (787)
Q Consensus 347 ~dG~V~IwDl~s~~~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~ 426 (787)
..|.|.-||+.+++.+-+++.+. ++..-.+...|.++..++.|| .++.||.++ | +.+++++
T Consensus 464 ~~G~l~A~D~~tG~~~W~~~~~~-~~~~g~~~tagglvf~g~~dg-~l~A~D~~t-------G----------~~lW~~~ 524 (582)
T 1flg_A 464 HVGSLRAMDPVSGKVVWEHKEHL-PLWAGVLATAGNLVFTGTGDG-YFKAFDAKS-------G----------KELWKFQ 524 (582)
T ss_dssp CSEEEEEECTTTCCEEEEEEESS-CCCSCCEEETTTEEEEECTTS-EEEEEETTT-------C----------CEEEEEE
T ss_pred CcceEEEEECCCCCEEEEecCCC-CCcccceEeCCCEEEEECCCC-cEEEEECCC-------C----------CEEEEec
Confidence 46899999999999887766432 222211222466777788866 599999865 5 5777776
Q ss_pred cccccccEEEEEEccCCC-EEEEEeC
Q 003907 427 RGITSATIQDICFSHYSQ-WIAIVSS 451 (787)
Q Consensus 427 rG~~~a~I~slaFSpDg~-~LAs~S~ 451 (787)
-+.. ..-.-+.|..||+ |+++.+.
T Consensus 525 ~~~g-~~a~P~~y~~~G~qYv~~~~G 549 (582)
T 1flg_A 525 TGSG-IVSPPITWEQDGEQYLGVTVG 549 (582)
T ss_dssp CSSC-CCSCCEEEEETTEEEEEEEEC
T ss_pred CCCC-cccCceEEEECCEEEEEEEcc
Confidence 4321 1112367788986 5655544
No 252
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=93.57 E-value=0.29 Score=58.28 Aligned_cols=96 Identities=15% Similarity=0.071 Sum_probs=56.5
Q ss_pred ceEEEEECCCC-cEEE-EeccCCCCeEEEEECCCCCEEEEEEcCC----CEEEEEeCCCCcccCCCCCCccccCCcceEE
Q 003907 349 GIVVVKDFVTR-AIIS-QFKAHTSPISALCFDPSGTLLVTASVYG----NNINIFRIMPSCMRSGSGNHKYDWNSSHVHL 422 (787)
Q Consensus 349 G~V~IwDl~s~-~~v~-~~~aH~~pIsaLaFSpdG~lLATaS~dG----~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l 422 (787)
..|.++|+.++ +.+. .+.. ....++|+|||+.|+..+.+. ..|.++++.. +. .....+
T Consensus 201 ~~l~v~dl~~g~~~l~~~~~~---~~~~~~WspDg~~l~y~~~d~~~~~~~v~~~~lgt-------~~------~~~~lv 264 (751)
T 2xe4_A 201 YTIEFKRISDPSQTIADKVSG---TNGEIVWGPDHTSLFYVTKDETLRENKVWRHVMGK-------LQ------SEDVCL 264 (751)
T ss_dssp EEEEEEETTCTTCCCCCCEEE---ECSCCEECSSTTEEEEEEECTTCCEEEEEEEETTS-------CG------GGCEEE
T ss_pred EEEEEEECCCCCEeCCccccC---ceeeEEEecCCCEEEEEEECCCCCCCEEEEEECCC-------Cc------hhcEEE
Confidence 46888888887 5321 1211 134688999999888777642 2466666632 10 001233
Q ss_pred EEEecccccccEEEEEEccCCCEEEEEeCC---CeEEEEeCCCC
Q 003907 423 YKLHRGITSATIQDICFSHYSQWIAIVSSK---GTCHVFVLSPF 463 (787)
Q Consensus 423 ~~l~rG~~~a~I~slaFSpDg~~LAs~S~d---gTVhIwdl~~~ 463 (787)
++. .......++.|||||++|+..+.+ ..|.++|+...
T Consensus 265 ~~~---~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~ 305 (751)
T 2xe4_A 265 YEE---HNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKG 305 (751)
T ss_dssp EEC---CCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSC
T ss_pred Eec---CCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCC
Confidence 332 112235678999999999887743 34667777653
No 253
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=93.48 E-value=12 Score=42.00 Aligned_cols=48 Identities=10% Similarity=0.177 Sum_probs=41.4
Q ss_pred CEEEEEECCCCeEEEEEeCCCcEEEEEe-cCCeEEEEeCCeEEEEECCC
Q 003907 173 TAVRFYSFQSHCYEHVLRFRSSVCMVRC-SPRIVAVGLATQIYCFDALT 220 (787)
Q Consensus 173 ~tVrlWdlktg~~v~tL~f~s~V~sV~~-s~~~LaV~~~~~I~iwD~~T 220 (787)
++++++|+.+.+.++...++..|.-=+| +++.|+...++.||-|++..
T Consensus 86 ~~lQiFnle~K~klks~~~~e~VvfWkWis~~~l~lVT~taVyHWsi~~ 134 (494)
T 1bpo_A 86 KTLQIFNIEMKSKMKAHTMTDDVTFWKWISLNTVALVTDNAVYHWSMEG 134 (494)
T ss_dssp TEEEEEETTTTEEEEEEECSSCCCEEEEEETTEEEEECSSEEEEEESSS
T ss_pred CeEEEEchHHhhhhcceecCCCceEEEecCCCeEEEEcCCeeEEecccC
Confidence 6899999999999999999987644444 78999999999999999864
No 254
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=93.16 E-value=11 Score=40.72 Aligned_cols=48 Identities=10% Similarity=0.177 Sum_probs=42.3
Q ss_pred CEEEEEECCCCeEEEEEeCCCcEEEEEe-cCCeEEEEeCCeEEEEECCC
Q 003907 173 TAVRFYSFQSHCYEHVLRFRSSVCMVRC-SPRIVAVGLATQIYCFDALT 220 (787)
Q Consensus 173 ~tVrlWdlktg~~v~tL~f~s~V~sV~~-s~~~LaV~~~~~I~iwD~~T 220 (787)
++++++|+.+.+.++...++..|.-=+| +++.|+...++.||-|++..
T Consensus 87 ~~LQiFnletK~klks~~~~e~VvfWkWis~~~L~lVT~taVyHWs~~~ 135 (365)
T 2xzh_A 87 KTLQIFNIEMKSKMKAHTMTDDVTFWKWISLNTVALVTDNAVYHWSMEG 135 (365)
T ss_dssp TEEEEEETTTTEEEEEEECSSCEEEEEECSSSEEEEEESSEEEEEESST
T ss_pred CeEEEechHHhhhhcceecCCccEEEEecCCCeEEEEcCCcEEEEcccC
Confidence 5899999999999999999988865555 77999999999999999864
No 255
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=92.92 E-value=7.7 Score=44.49 Aligned_cols=58 Identities=12% Similarity=0.065 Sum_probs=41.0
Q ss_pred CEEEEEECCCCeEEEEEeCCC-----cEE-EEEecCCeEEEEe-------CCeEEEEECCCCceeEEEEec
Q 003907 173 TAVRFYSFQSHCYEHVLRFRS-----SVC-MVRCSPRIVAVGL-------ATQIYCFDALTLENKFSVLTY 230 (787)
Q Consensus 173 ~tVrlWdlktg~~v~tL~f~s-----~V~-sV~~s~~~LaV~~-------~~~I~iwD~~T~e~l~tl~t~ 230 (787)
+.|.-+|.++|+.+.+.+... .+. .-......|.++. ++.|+.||+.|++.++++...
T Consensus 125 g~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~ 195 (571)
T 2ad6_A 125 GHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVAKDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFAT 195 (571)
T ss_dssp SEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETTEEEEECBCGGGTCCCEEEEEETTTCCEEEEEESS
T ss_pred CEEEEEECCCCCEEEEecCCCCCccceeccCCEEECCEEEEEecCCccCCCCEEEEEECCCCcEEEEEccC
Confidence 579999999999998887543 221 1111235555554 468999999999999988753
No 256
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=92.82 E-value=5.6 Score=46.15 Aligned_cols=59 Identities=15% Similarity=0.046 Sum_probs=42.9
Q ss_pred CCEEEEEECCCCeEEEEEeCCCcE-----------------------------------------EEEEecCCeEEEEeC
Q 003907 172 PTAVRFYSFQSHCYEHVLRFRSSV-----------------------------------------CMVRCSPRIVAVGLA 210 (787)
Q Consensus 172 p~tVrlWdlktg~~v~tL~f~s~V-----------------------------------------~sV~~s~~~LaV~~~ 210 (787)
++.|+-+|.++|+.+..+....+. .+++....+|.++..
T Consensus 181 ~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g 260 (599)
T 1w6s_A 181 RGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTG 260 (599)
T ss_dssp CCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECC
T ss_pred CCeEEEEECCCCcEEEEEcCCCCccccccccccccccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCC
Confidence 468999999999999888754321 123334466666654
Q ss_pred C-----------------eEEEEECCCCceeEEEEec
Q 003907 211 T-----------------QIYCFDALTLENKFSVLTY 230 (787)
Q Consensus 211 ~-----------------~I~iwD~~T~e~l~tl~t~ 230 (787)
+ .|+.+|+.|++.++...+.
T Consensus 261 ~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~ 297 (599)
T 1w6s_A 261 NPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKT 297 (599)
T ss_dssp CCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESS
T ss_pred CCccccCcccCCCccccceEEEEeCCCCceeeEeecC
Confidence 2 7999999999999888753
No 257
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=92.46 E-value=12 Score=39.10 Aligned_cols=95 Identities=17% Similarity=0.106 Sum_probs=53.8
Q ss_pred CceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCC-CEEEEEeCCCCcccCCCCCCccccCCcceEEEEEe
Q 003907 348 AGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYG-NNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLH 426 (787)
Q Consensus 348 dG~V~IwDl~s~~~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG-~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~ 426 (787)
.+.|.+.|+........+...-.....|+++|++..|.-+.... ..|..+++. |. ....+.
T Consensus 98 ~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~d--------G~----------~~~~~~ 159 (316)
T 1ijq_A 98 LGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN--------GV----------DIYSLV 159 (316)
T ss_dssp TTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETT--------SC----------CEEEEE
T ss_pred CCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCC--------CC----------CeEEEE
Confidence 34566666654333222332334568999999655554444422 456666652 31 112221
Q ss_pred cccccccEEEEEEccCCCEEEEEe-CCCeEEEEeCC
Q 003907 427 RGITSATIQDICFSHYSQWIAIVS-SKGTCHVFVLS 461 (787)
Q Consensus 427 rG~~~a~I~slaFSpDg~~LAs~S-~dgTVhIwdl~ 461 (787)
.. .-..-..|+|+++++.|..+. ..++|..++++
T Consensus 160 ~~-~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~d 194 (316)
T 1ijq_A 160 TE-NIQWPNGITLDLLSGRLYWVDSKLHSISSIDVN 194 (316)
T ss_dssp CS-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred EC-CCCCceEEEEeccCCEEEEEECCCCeEEEEecC
Confidence 11 112467899999877766554 56789999876
No 258
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=92.30 E-value=3.3 Score=42.17 Aligned_cols=88 Identities=16% Similarity=0.132 Sum_probs=57.5
Q ss_pred ceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecc
Q 003907 349 GIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRG 428 (787)
Q Consensus 349 G~V~IwDl~s~~~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG 428 (787)
+.|..+| .+++.+..+..+...+.+++++++|++.+. +.++. +..+|.. | ..++.+..+
T Consensus 195 ~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~l~v~-t~~~g-l~~~~~~--------g----------~~~~~~~~~ 253 (330)
T 3hxj_A 195 DKVYAIN-PDGTEKWNFYAGYWTVTRPAISEDGTIYVT-SLDGH-LYAINPD--------G----------TEKWRFKTG 253 (330)
T ss_dssp SSEEEEC-TTSCEEEEECCSSCCCSCCEECTTSCEEEE-ETTTE-EEEECTT--------S----------CEEEEEECS
T ss_pred CEEEEEC-CCCcEEEEEccCCcceeceEECCCCeEEEE-cCCCe-EEEECCC--------C----------CEeEEeeCC
Confidence 6778888 677777777666677899999999987764 44354 6666631 2 244444332
Q ss_pred cccccEEEEEEccCCCEEEEEeCCCeEEEEeC
Q 003907 429 ITSATIQDICFSHYSQWIAIVSSKGTCHVFVL 460 (787)
Q Consensus 429 ~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl 460 (787)
...+.++.+.++++ |.+++.+|.+..||.
T Consensus 254 --~~~~~~~~~~~~g~-l~v~t~~ggl~~~d~ 282 (330)
T 3hxj_A 254 --KRIESSPVIGNTDT-IYFGSYDGHLYAINP 282 (330)
T ss_dssp --SCCCSCCEECTTSC-EEEECTTCEEEEECT
T ss_pred --CCccccceEcCCCe-EEEecCCCCEEEECC
Confidence 12234466666664 667788888888873
No 259
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=91.73 E-value=4.7 Score=46.74 Aligned_cols=49 Identities=8% Similarity=0.078 Sum_probs=29.9
Q ss_pred EEEEEECCCCeEEEEEeCCC---cEEEEEe-cCCeEEEEeC-------CeEEEEECCCCc
Q 003907 174 AVRFYSFQSHCYEHVLRFRS---SVCMVRC-SPRIVAVGLA-------TQIYCFDALTLE 222 (787)
Q Consensus 174 tVrlWdlktg~~v~tL~f~s---~V~sV~~-s~~~LaV~~~-------~~I~iwD~~T~e 222 (787)
.+.+||.++++-...-..+. .-.++.+ +.+++++|.. +.+.+||..+.+
T Consensus 266 ~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~ 325 (656)
T 1k3i_A 266 KTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKT 325 (656)
T ss_dssp CEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTE
T ss_pred ceEEecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCc
Confidence 69999999876443222222 2234445 5677777652 358888887654
No 260
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=90.78 E-value=24 Score=40.51 Aligned_cols=56 Identities=9% Similarity=-0.098 Sum_probs=40.5
Q ss_pred EEEEEECCCCeEEEEEeCCCcE----------EEEEecCCeEEEE-eCCeEEEEECCCCceeEEEEe
Q 003907 174 AVRFYSFQSHCYEHVLRFRSSV----------CMVRCSPRIVAVG-LATQIYCFDALTLENKFSVLT 229 (787)
Q Consensus 174 tVrlWdlktg~~v~tL~f~s~V----------~sV~~s~~~LaV~-~~~~I~iwD~~T~e~l~tl~t 229 (787)
.|.-+|.++|+.+.+++..... ..+......|.++ .+..|+.+|+.|++.+++...
T Consensus 79 ~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~~~~~v~~~t~dg~l~AlD~~TG~~~W~~~~ 145 (582)
T 1flg_A 79 RLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAIYGDKVFFGTLDASVVALNKNTGKVVWKKKF 145 (582)
T ss_dssp EEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEEETTEEEEEETTTEEEEEESSSCCEEEEEEC
T ss_pred CEEEEECCCCcEEEEEcCCCCcccccccccCCCccEEECCEEEEEeCCCEEEEEECCCCCEEeeecC
Confidence 4888999999999988764321 1223344555554 567899999999999988764
No 261
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=89.95 E-value=19 Score=36.97 Aligned_cols=72 Identities=14% Similarity=0.071 Sum_probs=42.2
Q ss_pred eEEEEECCCCCEEEEEEcC---------CCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEe--cccccccEEEEEEc
Q 003907 372 ISALCFDPSGTLLVTASVY---------GNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLH--RGITSATIQDICFS 440 (787)
Q Consensus 372 IsaLaFSpdG~lLATaS~d---------G~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~--rG~~~a~I~slaFS 440 (787)
...|+++++|++.++.... ...|.+||.. | ..+..+. .|.....+.++++
T Consensus 231 P~gi~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~~--------G----------~~~~~~~~~~g~~~~~~~~~~~- 291 (322)
T 2fp8_A 231 PGNIKRNADGHFWVSSSEELDGNMHGRVDPKGIKFDEF--------G----------NILEVIPLPPPFAGEHFEQIQE- 291 (322)
T ss_dssp EEEEEECTTSCEEEEEEEETTSSTTSCEEEEEEEECTT--------S----------CEEEEEECCTTTTTSCCCEEEE-
T ss_pred CCCeEECCCCCEEEEecCcccccccCCCccEEEEECCC--------C----------CEEEEEECCCCCccccceEEEE-
Confidence 5679999999987776441 1235555531 3 2333332 2321234677777
Q ss_pred cCCCEEEEEeCCCeEEEEeCCC
Q 003907 441 HYSQWIAIVSSKGTCHVFVLSP 462 (787)
Q Consensus 441 pDg~~LAs~S~dgTVhIwdl~~ 462 (787)
.+++..++....+.|.+|++..
T Consensus 292 ~~g~L~v~~~~~~~i~~~~~~~ 313 (322)
T 2fp8_A 292 HDGLLYIGTLFHGSVGILVYDK 313 (322)
T ss_dssp ETTEEEEECSSCSEEEEEEC--
T ss_pred eCCEEEEeecCCCceEEEeccc
Confidence 4666666666788899999864
No 262
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=89.39 E-value=6.4 Score=42.78 Aligned_cols=98 Identities=13% Similarity=0.236 Sum_probs=62.9
Q ss_pred CCCceEEEEECCCCcEEEEeccCCCCeEEEEECC----CCCE--EEEEEcCC---CEEEEEeCCCCcccCCCCCCccccC
Q 003907 346 DNAGIVVVKDFVTRAIISQFKAHTSPISALCFDP----SGTL--LVTASVYG---NNINIFRIMPSCMRSGSGNHKYDWN 416 (787)
Q Consensus 346 ~~dG~V~IwDl~s~~~v~~~~aH~~pIsaLaFSp----dG~l--LATaS~dG---~~IrVWdi~~~~~~~~~g~~~~~~~ 416 (787)
...+-+.|||+ +++.+..+.. +.++.+..-| .|+. ||.++..+ ..|+||++.+..
T Consensus 47 ~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~------------- 110 (355)
T 3amr_A 47 NKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKN------------- 110 (355)
T ss_dssp ETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTT-------------
T ss_pred cCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCC-------------
Confidence 44578999999 8888888864 5566666655 2332 55555543 679999885420
Q ss_pred CcceEEEEEec-----ccccccEEEEEE--ccC-CC-EEEEEeCCCeEEEEeCCC
Q 003907 417 SSHVHLYKLHR-----GITSATIQDICF--SHY-SQ-WIAIVSSKGTCHVFVLSP 462 (787)
Q Consensus 417 ~s~~~l~~l~r-----G~~~a~I~slaF--SpD-g~-~LAs~S~dgTVhIwdl~~ 462 (787)
..+..+-+ +..-..++.+|+ +|+ ++ ++.+...+|.+..|++..
T Consensus 111 ---~~l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~ 162 (355)
T 3amr_A 111 ---GTLQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKA 162 (355)
T ss_dssp ---CCEEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEE
T ss_pred ---CceeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEe
Confidence 12333311 011134777888 775 44 688888889999999864
No 263
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=88.12 E-value=8.8 Score=38.35 Aligned_cols=95 Identities=7% Similarity=0.050 Sum_probs=58.9
Q ss_pred CceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEec
Q 003907 348 AGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHR 427 (787)
Q Consensus 348 dG~V~IwDl~s~~~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~r 427 (787)
.+.|.++|+........+.........|+|+|++..|..+......|.++++. |. ....+ ...
T Consensus 57 ~~~I~~~~~~g~~~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~--------g~-------~~~~~--~~~ 119 (267)
T 1npe_A 57 EPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMD--------GT-------QRRVL--FDT 119 (267)
T ss_dssp TTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETT--------SC-------SCEEE--ECS
T ss_pred CCEEEEEecCCCCcEEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcC--------CC-------CEEEE--EEC
Confidence 56788888876554333333334568999999876666666656678888873 21 00111 111
Q ss_pred ccccccEEEEEEccCCCEEEEEeC---CCeEEEEeCC
Q 003907 428 GITSATIQDICFSHYSQWIAIVSS---KGTCHVFVLS 461 (787)
Q Consensus 428 G~~~a~I~slaFSpDg~~LAs~S~---dgTVhIwdl~ 461 (787)
+. .....|+++|++.+|..+.. .+.|..++++
T Consensus 120 ~~--~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~d 154 (267)
T 1npe_A 120 GL--VNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMD 154 (267)
T ss_dssp SC--SSEEEEEEETTTTEEEEEECCSSSCEEEEEETT
T ss_pred CC--CCccEEEEeeCCCEEEEEECCCCCcEEEEEecC
Confidence 21 24688999998776655553 3678777765
No 264
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=87.24 E-value=35 Score=36.62 Aligned_cols=50 Identities=10% Similarity=-0.037 Sum_probs=32.7
Q ss_pred CEEEEEECCCCeEEEEEeCCCcEEEEEecC--CeEEEEe--CCeEEEEECCCCc
Q 003907 173 TAVRFYSFQSHCYEHVLRFRSSVCMVRCSP--RIVAVGL--ATQIYCFDALTLE 222 (787)
Q Consensus 173 ~tVrlWdlktg~~v~tL~f~s~V~sV~~s~--~~LaV~~--~~~I~iwD~~T~e 222 (787)
..|+.+++..++....+.....+.+|++++ +.|.++. .++|+.+++.+..
T Consensus 96 ~~I~~i~~~~~~~~~~~~~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~ 149 (386)
T 3v65_B 96 IDIRQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSN 149 (386)
T ss_dssp SCEEEECTTSCCCEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCC
T ss_pred ccceeeccCCCcEEEEecCCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCC
Confidence 468888888776655555445677888764 4555543 3468888876554
No 265
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=87.23 E-value=4.2 Score=45.46 Aligned_cols=109 Identities=12% Similarity=0.127 Sum_probs=69.6
Q ss_pred CCceEEEEECCCCcEEEEeccC----CCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEE
Q 003907 347 NAGIVVVKDFVTRAIISQFKAH----TSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHL 422 (787)
Q Consensus 347 ~dG~V~IwDl~s~~~v~~~~aH----~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l 422 (787)
.+..||.-++......+.++.- -..|..+..||+|++||..+.+ .|.|-.+-.... .... +......+.
T Consensus 39 ~~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~~--~V~Vv~LP~~~~----~~~~-~~~~~~~q~ 111 (452)
T 3pbp_A 39 QDNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFNDN--EIFVMEVPWGYS----NVED-VSIQDAFQI 111 (452)
T ss_dssp ETTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEECSS--EEEEEECCTTCS----CCCC-HHHHHTTEE
T ss_pred ECCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEecCC--eEEEEEecCccc----cCcc-cccccccce
Confidence 4567777777754433444332 2367889999999999998763 589998832110 0000 000011233
Q ss_pred EEEecccc----cccEEEEEEccCC---CEEEEEeCCCeEEEEeCCC
Q 003907 423 YKLHRGIT----SATIQDICFSHYS---QWIAIVSSKGTCHVFVLSP 462 (787)
Q Consensus 423 ~~l~rG~~----~a~I~slaFSpDg---~~LAs~S~dgTVhIwdl~~ 462 (787)
+.++-|.. ...|..+-|+|-| ..|++-..|++|++||+..
T Consensus 112 ~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~ 158 (452)
T 3pbp_A 112 FHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILN 158 (452)
T ss_dssp EEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTC
T ss_pred eEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEccc
Confidence 34443321 3569999999964 6899999999999999986
No 266
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=87.16 E-value=22 Score=44.42 Aligned_cols=95 Identities=9% Similarity=0.116 Sum_probs=57.6
Q ss_pred ceEEEEECCCCcEEE-EeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEec
Q 003907 349 GIVVVKDFVTRAIIS-QFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHR 427 (787)
Q Consensus 349 G~V~IwDl~s~~~v~-~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~r 427 (787)
..|+|||+...+.+. ....+. .|..+...-.|.+++.|+.... |.++..+.. ...+..+-|
T Consensus 904 ~~l~vy~l~~~~~L~~~~~~~~-~i~~~~l~~~~~~I~vgD~~~S-v~~~~y~~~----------------~~~L~~~a~ 965 (1158)
T 3ei3_A 904 STVRLYEWTTEKELRTECNHYN-NIMALYLKTKGDFILVGDLMRS-VLLLAYKPM----------------EGNFEEIAR 965 (1158)
T ss_dssp TEEEEEEECTTSCEEEEEEECC-CSCEEEEEEETTEEEEEESSBC-EEEEEEETT----------------TTEEEEEEE
T ss_pred CEEEEEECCCCceEEEEeeccc-cEEEEEEeccCCEEEEEEhhhe-EEEEEEEcC----------------CCeEEEEEe
Confidence 467788877654333 111121 1333334345778888876443 554433221 036667766
Q ss_pred ccccccEEEEEEccCCCEEEEEeCCCeEEEEeCCC
Q 003907 428 GITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSP 462 (787)
Q Consensus 428 G~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~~ 462 (787)
......++++.|=.|+ .++.+..+|.++++..++
T Consensus 966 D~~~~~vta~~~ld~~-t~l~aD~~gNl~vl~~~~ 999 (1158)
T 3ei3_A 966 DFNPNWMSAVEILDDD-NFLGAENAFNLFVCQKDS 999 (1158)
T ss_dssp CCSCBCEEEEEEEETT-EEEEEETTSEEEEEEECT
T ss_pred ecccccEEEEEEEccC-cEEEEcCCCcEEEEecCC
Confidence 6556678999987665 567788999999999876
No 267
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=87.07 E-value=36 Score=39.28 Aligned_cols=57 Identities=9% Similarity=-0.046 Sum_probs=39.8
Q ss_pred CEEEEEEC-CCCeEEEEEeCCCc------------EEEEEe--cCCe----EEEE-eCCeEEEEECCCCceeEEEEe
Q 003907 173 TAVRFYSF-QSHCYEHVLRFRSS------------VCMVRC--SPRI----VAVG-LATQIYCFDALTLENKFSVLT 229 (787)
Q Consensus 173 ~tVrlWdl-ktg~~v~tL~f~s~------------V~sV~~--s~~~----LaV~-~~~~I~iwD~~T~e~l~tl~t 229 (787)
+.|.-+|. ++|+.+.+.+.... ...+.. .... |.++ .+..++.+|+.|++.+++...
T Consensus 73 ~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG~~~W~~~~ 149 (599)
T 1w6s_A 73 NNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETGETVWKVEN 149 (599)
T ss_dssp TCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred CEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcCCCEEEEEECCCCCEEEeecC
Confidence 46888999 99999998875431 112334 2222 5555 567899999999999887653
No 268
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=86.85 E-value=16 Score=40.01 Aligned_cols=71 Identities=13% Similarity=-0.005 Sum_probs=44.2
Q ss_pred eEEEEECC-CCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEE-ecccccccEEEEEEccCCCEEEEE
Q 003907 372 ISALCFDP-SGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKL-HRGITSATIQDICFSHYSQWIAIV 449 (787)
Q Consensus 372 IsaLaFSp-dG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l-~rG~~~a~I~slaFSpDg~~LAs~ 449 (787)
...++++| +|.++++-.. ...|..|+... + .+..+ ..+. ...-..|+|+|||++|..+
T Consensus 228 p~giavdp~~g~lyv~d~~-~~~V~~~~~~~-------~-----------~~~~~~~~~~-~~~P~gia~~pdG~~lyv~ 287 (430)
T 3tc9_A 228 CNGAETHPINGELYFNSWN-AGQVFRYDFTT-------Q-----------ETTPLFTIQD-SGWEFHIQFHPSGNYAYIV 287 (430)
T ss_dssp CCCEEECTTTCCEEEEETT-TTEEEEEETTT-------T-----------EEEEEEECSS-SSCCEEEEECTTSSEEEEE
T ss_pred ceEEEEeCCCCEEEEEECC-CCEEEEEECCC-------C-----------cEEEEEEcCC-CCcceeEEEcCCCCEEEEE
Confidence 35688999 7776665444 45588888632 1 11111 1111 1235789999999955444
Q ss_pred -eCCCeEEEEeCCC
Q 003907 450 -SSKGTCHVFVLSP 462 (787)
Q Consensus 450 -S~dgTVhIwdl~~ 462 (787)
...+.|..|+.+.
T Consensus 288 d~~~~~I~~~~~d~ 301 (430)
T 3tc9_A 288 VVNQHYILRSDYDW 301 (430)
T ss_dssp ETTTTEEEEEEEET
T ss_pred ECCCCEEEEEeCCc
Confidence 5678899988764
No 269
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=86.81 E-value=5.1 Score=47.47 Aligned_cols=30 Identities=7% Similarity=0.035 Sum_probs=21.0
Q ss_pred CeEEEEECCCCCEEEEEEcC--CCEEEEEeCC
Q 003907 371 PISALCFDPSGTLLVTASVY--GNNINIFRIM 400 (787)
Q Consensus 371 pIsaLaFSpdG~lLATaS~d--G~~IrVWdi~ 400 (787)
-...+.|||||++|+..+.. ...|.++|+.
T Consensus 272 ~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~ 303 (751)
T 2xe4_A 272 FSAFMYKAADTNTLCIGSQSPETAEVHLLDLR 303 (751)
T ss_dssp CEEEEEECTTSSEEEEEEECSSCEEEEEEESS
T ss_pred eEEEEEECCCCCEEEEEecCCCCceEEEEECC
Confidence 35678999999998876543 2346667764
No 270
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=85.80 E-value=39 Score=35.72 Aligned_cols=93 Identities=8% Similarity=-0.043 Sum_probs=51.2
Q ss_pred ceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCC-CEEEEEeCCCCcccCCCCCCccccCCcceEEEEE-e
Q 003907 349 GIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYG-NNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKL-H 426 (787)
Q Consensus 349 G~V~IwDl~s~~~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG-~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l-~ 426 (787)
+.|.+.|+........+...-..-..|+++|.+..|.-+.... ..|..+++. |. ....+ .
T Consensus 138 ~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~d--------G~----------~~~~~~~ 199 (349)
T 3v64_C 138 SRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMD--------GS----------GRRIIAD 199 (349)
T ss_dssp TEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETT--------SC----------SCEESCC
T ss_pred CeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCC--------CC----------CcEEEEE
Confidence 3455555543322222223334458899999655555554433 557777652 21 11111 1
Q ss_pred cccccccEEEEEEccCCCEEEEEe-CCCeEEEEeCC
Q 003907 427 RGITSATIQDICFSHYSQWIAIVS-SKGTCHVFVLS 461 (787)
Q Consensus 427 rG~~~a~I~slaFSpDg~~LAs~S-~dgTVhIwdl~ 461 (787)
.+. ..-..|+|+|+++.|..+. ..++|..++++
T Consensus 200 ~~~--~~PnGla~d~~~~~lY~aD~~~~~I~~~~~d 233 (349)
T 3v64_C 200 THL--FWPNGLTIDYAGRRMYWVDAKHHVIERANLD 233 (349)
T ss_dssp SSC--SCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred CCC--CCcceEEEeCCCCEEEEEECCCCEEEEEeCC
Confidence 111 2367899998777666554 56788888875
No 271
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=85.06 E-value=28 Score=44.58 Aligned_cols=48 Identities=10% Similarity=0.177 Sum_probs=41.5
Q ss_pred CEEEEEECCCCeEEEEEeCCCcEEEEEe-cCCeEEEEeCCeEEEEECCC
Q 003907 173 TAVRFYSFQSHCYEHVLRFRSSVCMVRC-SPRIVAVGLATQIYCFDALT 220 (787)
Q Consensus 173 ~tVrlWdlktg~~v~tL~f~s~V~sV~~-s~~~LaV~~~~~I~iwD~~T 220 (787)
++++|+|+.+.+.+++..++..|.-=+| +++.|+...++.||-|++..
T Consensus 86 ~~lQiFnl~~k~klks~~~~e~VvfWkWis~~~l~lVT~~aVyHW~~~~ 134 (1630)
T 1xi4_A 86 KTLQIFNIEMKSKMKAHTMTDDVTFWKWISLNTVALVTDNAVYHWSMEG 134 (1630)
T ss_pred CeEEEeehHHhhhhcccccCCCceEEEecCCCeeEEEcCCeEEEeccCC
Confidence 6899999999999999999987755455 77999999899999999853
No 272
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=84.53 E-value=48 Score=35.76 Aligned_cols=95 Identities=16% Similarity=0.084 Sum_probs=54.3
Q ss_pred ceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEc-CCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEec
Q 003907 349 GIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASV-YGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHR 427 (787)
Q Consensus 349 G~V~IwDl~s~~~v~~~~aH~~pIsaLaFSpdG~lLATaS~-dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~r 427 (787)
+.|.+.|+........+...-.....|+++|.+.+|.-+.. +...|...++. |. .... -+..
T Consensus 181 ~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~d--------G~--------~~~~-~~~~ 243 (400)
T 3p5b_L 181 GTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN--------GV--------DIYS-LVTE 243 (400)
T ss_dssp TEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETT--------SC--------SCEE-EECS
T ss_pred CeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCC--------CC--------ccEE-EEEC
Confidence 45666666544433333333345689999996555554443 22347777752 21 0111 1112
Q ss_pred ccccccEEEEEEccCCCEEEEEe-CCCeEEEEeCCC
Q 003907 428 GITSATIQDICFSHYSQWIAIVS-SKGTCHVFVLSP 462 (787)
Q Consensus 428 G~~~a~I~slaFSpDg~~LAs~S-~dgTVhIwdl~~ 462 (787)
+. .....|+|+++++.|..+. ..++|..++++.
T Consensus 244 ~l--~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG 277 (400)
T 3p5b_L 244 NI--QWPNGITLDLLSGRLYWVDSKLHSISSIDVNG 277 (400)
T ss_dssp SC--SCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred CC--CceEEEEEEeCCCEEEEEECCCCEEEEEeCCC
Confidence 21 2468899999888776664 467888888753
No 273
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=84.48 E-value=6.7 Score=40.42 Aligned_cols=79 Identities=18% Similarity=0.221 Sum_probs=48.4
Q ss_pred CcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEE
Q 003907 359 RAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDIC 438 (787)
Q Consensus 359 ~~~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~sla 438 (787)
.+.+.+|..+ .....++|+++|+++++-.. +..|..||.. + .....+..+ .....|+
T Consensus 22 ~~~~~~~p~~-~~pegia~~~~g~lyv~d~~-~~~I~~~d~~--------g----------~~~~~~~~~---~~p~gia 78 (306)
T 2p4o_A 22 AKIITSFPVN-TFLENLASAPDGTIFVTNHE-VGEIVSITPD--------G----------NQQIHATVE---GKVSGLA 78 (306)
T ss_dssp EEEEEEECTT-CCEEEEEECTTSCEEEEETT-TTEEEEECTT--------C----------CEEEEEECS---SEEEEEE
T ss_pred ceEeEeCCCC-CCcceEEECCCCCEEEEeCC-CCeEEEECCC--------C----------ceEEEEeCC---CCceeEE
Confidence 3456666544 34678999999997776545 4457777752 2 122222212 3578999
Q ss_pred EccCCCEEEEEeCCCe--EEEEeC
Q 003907 439 FSHYSQWIAIVSSKGT--CHVFVL 460 (787)
Q Consensus 439 FSpDg~~LAs~S~dgT--VhIwdl 460 (787)
|++||+++++...... |..++.
T Consensus 79 ~~~dG~l~vad~~~~~~~v~~~d~ 102 (306)
T 2p4o_A 79 FTSNGDLVATGWNADSIPVVSLVK 102 (306)
T ss_dssp ECTTSCEEEEEECTTSCEEEEEEC
T ss_pred EcCCCcEEEEeccCCcceEEEEcC
Confidence 9999997666644333 444443
No 274
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=84.35 E-value=93 Score=38.88 Aligned_cols=91 Identities=18% Similarity=0.212 Sum_probs=56.2
Q ss_pred eEEEEECCCCcEEEEeccC-CCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecc
Q 003907 350 IVVVKDFVTRAIISQFKAH-TSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRG 428 (787)
Q Consensus 350 ~V~IwDl~s~~~v~~~~aH-~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG 428 (787)
.|++.+...++.+..++.- ...|.+.+.+. .+++.++ |..+.+|++.. + .+.+..+-
T Consensus 493 ~Irli~~~~~~~~~~w~~p~~~~I~~As~n~--~~vvva~--g~~l~~fel~~-------~-----------~L~~~~~~ 550 (1158)
T 3ei3_A 493 SVRLVSQEPKALVSEWKEPQAKNISVASCNS--SQVVVAV--GRALYYLQIHP-------Q-----------ELRQISHT 550 (1158)
T ss_dssp CEEEEESSSCCEEEEECCTTCCCCCEEEECS--SEEEEEE--TTEEEEEEEET-------T-----------EEEEEEEE
T ss_pred EEEEEECCCCeEEEEEECCCCCEEEEEEeCC--CEEEEEE--CCEEEEEEeeC-------C-----------ceeeeccc
Confidence 3555555444445555432 34677767653 4666664 45577888742 1 12222221
Q ss_pred cccccEEEEEEccC------CCEEEEEeC-CCeEEEEeCCC
Q 003907 429 ITSATIQDICFSHY------SQWIAIVSS-KGTCHVFVLSP 462 (787)
Q Consensus 429 ~~~a~I~slaFSpD------g~~LAs~S~-dgTVhIwdl~~ 462 (787)
.-...|.|+++.|. ++++|+|.. |+|++|+++..
T Consensus 551 ~l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~ 591 (1158)
T 3ei3_A 551 EMEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPS 591 (1158)
T ss_dssp ECSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTT
T ss_pred CCCCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCC
Confidence 12347999999864 479999996 99999999963
No 275
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=84.12 E-value=23 Score=38.29 Aligned_cols=107 Identities=7% Similarity=0.159 Sum_probs=69.1
Q ss_pred CceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEec
Q 003907 348 AGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHR 427 (787)
Q Consensus 348 dG~V~IwDl~s~~~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~r 427 (787)
..+++|+|+.+++.+..+.-. .+|..=.|=.+. .|+--. ++.|--|++... ....++++.+.
T Consensus 86 g~~LQiFnletK~klks~~~~-e~VvfWkWis~~-~L~lVT--~taVyHWs~~~~--------------s~P~kvFdR~~ 147 (365)
T 2xzh_A 86 GKTLQIFNIEMKSKMKAHTMT-DDVTFWKWISLN-TVALVT--DNAVYHWSMEGE--------------SQPVKMFDRHS 147 (365)
T ss_dssp TTEEEEEETTTTEEEEEEECS-SCEEEEEECSSS-EEEEEE--SSEEEEEESSTT--------------CCCEEEEECCG
T ss_pred CCeEEEechHHhhhhcceecC-CccEEEEecCCC-eEEEEc--CCcEEEEcccCC--------------CCCceeeecch
Confidence 457999999999887776554 477777775443 333333 345899998421 11244444333
Q ss_pred ccccccEEEEEEccCCCEEEEEeC-------CCeEEEEeCCCCCCcccccccc
Q 003907 428 GITSATIQDICFSHYSQWIAIVSS-------KGTCHVFVLSPFGGDSGFQTLS 473 (787)
Q Consensus 428 G~~~a~I~slaFSpDg~~LAs~S~-------dgTVhIwdl~~~gg~~~~~~H~ 473 (787)
-.....|.+-.-++|.+|++..+- .|.+.+|.++.. ....+.+|.
T Consensus 148 ~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~-~sQ~ieGha 199 (365)
T 2xzh_A 148 SLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHA 199 (365)
T ss_dssp GGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTT-EEEEECCSE
T ss_pred hcccceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeeccc-ccceeeeee
Confidence 333457888999999999887753 267889988753 344566664
No 276
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=84.11 E-value=47 Score=36.32 Aligned_cols=52 Identities=25% Similarity=0.222 Sum_probs=34.6
Q ss_pred CceEEEEECCCCcEEEEeccC-CCCeEEEEECCCCCEEEEEEcCCCEEEEEeC
Q 003907 348 AGIVVVKDFVTRAIISQFKAH-TSPISALCFDPSGTLLVTASVYGNNINIFRI 399 (787)
Q Consensus 348 dG~V~IwDl~s~~~v~~~~aH-~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi 399 (787)
.+.|..+|..++.....+... ...-..|+|+|+|++|..+....+.|.+|+.
T Consensus 247 ~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I~~~~~ 299 (430)
T 3tc9_A 247 AGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYILRSDY 299 (430)
T ss_dssp TTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred CCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCEEEEEeC
Confidence 457888887765532222211 1235689999999977777776777888875
No 277
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=83.87 E-value=23 Score=39.78 Aligned_cols=107 Identities=7% Similarity=0.165 Sum_probs=68.0
Q ss_pred CceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEec
Q 003907 348 AGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHR 427 (787)
Q Consensus 348 dG~V~IwDl~s~~~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~r 427 (787)
..+++|+|+.+++.+..+.-.+ +|..=.|=.+ +.|+--. ++.|--|++... ....++++.+.
T Consensus 85 g~~lQiFnle~K~klks~~~~e-~VvfWkWis~-~~l~lVT--~taVyHWsi~~~--------------s~P~kvFdR~~ 146 (494)
T 1bpo_A 85 GKTLQIFNIEMKSKMKAHTMTD-DVTFWKWISL-NTVALVT--DNAVYHWSMEGE--------------SQPVKMFDRHS 146 (494)
T ss_dssp TTEEEEEETTTTEEEEEEECSS-CCCEEEEEET-TEEEEEC--SSEEEEEESSSS--------------CCCEEEEECCG
T ss_pred CCeEEEEchHHhhhhcceecCC-CceEEEecCC-CeEEEEc--CCeeEEecccCC--------------CCchhheecch
Confidence 4689999999998777665444 5655566322 3343333 345899998421 11244444332
Q ss_pred ccccccEEEEEEccCCCEEEEEeC-------CCeEEEEeCCCCCCcccccccc
Q 003907 428 GITSATIQDICFSHYSQWIAIVSS-------KGTCHVFVLSPFGGDSGFQTLS 473 (787)
Q Consensus 428 G~~~a~I~slaFSpDg~~LAs~S~-------dgTVhIwdl~~~gg~~~~~~H~ 473 (787)
-.....|.+-.-++|.+|++..+- .|.+.+|.++. +....+.+|.
T Consensus 147 ~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er-~~sQ~ieGha 198 (494)
T 1bpo_A 147 SLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDR-KVSQPIEGHA 198 (494)
T ss_dssp GGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTT-CCEEEECCSE
T ss_pred hcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccc-cccchheeee
Confidence 333457888999999999986543 36788999875 3445566774
No 278
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=79.41 E-value=84 Score=35.04 Aligned_cols=77 Identities=25% Similarity=0.423 Sum_probs=50.1
Q ss_pred CCCCeEEEEECCC---CCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEec-----ccc--cccEEEE
Q 003907 368 HTSPISALCFDPS---GTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHR-----GIT--SATIQDI 437 (787)
Q Consensus 368 H~~pIsaLaFSpd---G~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~r-----G~~--~a~I~sl 437 (787)
...+|..+-|+|- |..|++=-.|+. ||+||+..... .+. .|.+ |.. ...|.++
T Consensus 123 ~~s~I~qVlWHPl~~~ds~LVVLtsD~~-Ir~yDl~~s~~---------------~P~-~L~k~~~~fg~d~~~~ev~S~ 185 (452)
T 3pbp_A 123 PKSSIKKVLFHPKSYRDSCIVVLKEDDT-ITMFDILNSQE---------------KPI-VLNKPNNSFGLDARVNDITDL 185 (452)
T ss_dssp CCCCEEEEEECTTBGGGCEEEEEETTSC-EEEEETTCTTS---------------CCE-EESCCCSEEESCSSCCCEEEE
T ss_pred CCCceeEEEeccccCCCCeEEEEecCCE-EEEEEcccCCC---------------CCc-chhccccccCCCcccceEEEE
Confidence 3678999999994 557887777565 99999964210 111 2211 211 1368999
Q ss_pred EEccCCCEEEEEe--CCCeEEEEeCCCC
Q 003907 438 CFSHYSQWIAIVS--SKGTCHVFVLSPF 463 (787)
Q Consensus 438 aFSpDg~~LAs~S--~dgTVhIwdl~~~ 463 (787)
+|+.++--|.+.+ ..| .||.+.|+
T Consensus 186 ~Fg~~~lTLYvl~~t~~G--DIYAlcP~ 211 (452)
T 3pbp_A 186 EFSKDGLTLYCLNTTEGG--DIFAFYPF 211 (452)
T ss_dssp EECTTSSCEEEEECTTSC--EEEEESSC
T ss_pred EEcCCCcEEEEEecCCCC--CEEEECCC
Confidence 9999987666655 555 56777664
No 279
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=79.25 E-value=18 Score=37.15 Aligned_cols=86 Identities=10% Similarity=0.098 Sum_probs=51.4
Q ss_pred CCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEe
Q 003907 347 NAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLH 426 (787)
Q Consensus 347 ~dG~V~IwDl~s~~~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~ 426 (787)
..|.|..+|..+++....... -..-+.|+|+|+|++|..+......|.+|++.... .+ . ...+.
T Consensus 163 ~~g~v~~~d~~~~~~~~~~~~-~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~----~~--------~-~~~~~-- 226 (322)
T 2fp8_A 163 KTGRLIKYDPSTKETTLLLKE-LHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPK----KG--------T-AEVLV-- 226 (322)
T ss_dssp CCEEEEEEETTTTEEEEEEEE-ESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTT----TT--------C-EEEEE--
T ss_pred CCceEEEEeCCCCEEEEeccC-CccCcceEECCCCCEEEEEeCCCCeEEEEECCCCc----CC--------c-cceEE--
Confidence 457888899877654332221 12345799999999776665545568999874210 01 0 12211
Q ss_pred cccccccEEEEEEccCCCEEEEEeC
Q 003907 427 RGITSATIQDICFSHYSQWIAIVSS 451 (787)
Q Consensus 427 rG~~~a~I~slaFSpDg~~LAs~S~ 451 (787)
. ... ...|++.+||++.++...
T Consensus 227 ~--~~g-P~gi~~d~~G~l~va~~~ 248 (322)
T 2fp8_A 227 K--IPN-PGNIKRNADGHFWVSSSE 248 (322)
T ss_dssp E--CSS-EEEEEECTTSCEEEEEEE
T ss_pred e--CCC-CCCeEECCCCCEEEEecC
Confidence 1 112 577999999986666544
No 280
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=78.04 E-value=9.5 Score=41.07 Aligned_cols=98 Identities=15% Similarity=0.150 Sum_probs=64.6
Q ss_pred CCceEEEEECC---CCcEEEEec--cCC-----------CCeEEEEECCCCCEEEEEEcCC-CEEEEEeCCCCcccCCCC
Q 003907 347 NAGIVVVKDFV---TRAIISQFK--AHT-----------SPISALCFDPSGTLLVTASVYG-NNINIFRIMPSCMRSGSG 409 (787)
Q Consensus 347 ~dG~V~IwDl~---s~~~v~~~~--aH~-----------~pIsaLaFSpdG~lLATaS~dG-~~IrVWdi~~~~~~~~~g 409 (787)
.+..|..+|+. +++.+..+. +.. ...+.|+.+++|+.-+|.+. + .. ||.+.+. |
T Consensus 98 g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~-~~~~--I~rV~pd------G 168 (334)
T 2p9w_A 98 GASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFAL-GMPA--IARVSAD------G 168 (334)
T ss_dssp SCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEE-SSCE--EEEECTT------S
T ss_pred CCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCC-CCCe--EEEEeCC------C
Confidence 35678889998 666554332 221 24789999999999999998 4 43 5555442 3
Q ss_pred CCccccCCcceEEEEEec--ccccccEEEEEEccCCCEEEEEeCCCeEEEEeCC
Q 003907 410 NHKYDWNSSHVHLYKLHR--GITSATIQDICFSHYSQWIAIVSSKGTCHVFVLS 461 (787)
Q Consensus 410 ~~~~~~~~s~~~l~~l~r--G~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~ 461 (787)
. ....+.+.. ..+..-...|++.|||+.|++....|.+..||+.
T Consensus 169 ~--------~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~ 214 (334)
T 2p9w_A 169 K--------TVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVS 214 (334)
T ss_dssp C--------CEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECS
T ss_pred C--------EEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCC
Confidence 1 011122221 1111125689999999999998779999999987
No 281
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=77.73 E-value=20 Score=42.10 Aligned_cols=49 Identities=10% Similarity=0.011 Sum_probs=30.0
Q ss_pred CCEEEEEECCCCeEEEEEeCCCcEEEEEecC--CeEEEEe--CCeEEEEECCC
Q 003907 172 PTAVRFYSFQSHCYEHVLRFRSSVCMVRCSP--RIVAVGL--ATQIYCFDALT 220 (787)
Q Consensus 172 p~tVrlWdlktg~~v~tL~f~s~V~sV~~s~--~~LaV~~--~~~I~iwD~~T 220 (787)
.+.|+..++.++++...+.....+.+|++++ +.|.++. .++|+.+++.+
T Consensus 385 ~~~I~~id~~~~~~~~~~~~~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g 437 (699)
T 1n7d_A 385 RHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDR 437 (699)
T ss_dssp TTC-CEECTTSCCEECCSCCCTTCCCCEEETTTTEEEECCTTTTSBEEEESCC
T ss_pred ccceEEEeCCCCcceeeeccCcceEEEccccccCeEEEEecCCCeEEEEecCC
Confidence 3578888888877665554434555666654 4555543 34688887764
No 282
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=77.62 E-value=75 Score=35.88 Aligned_cols=29 Identities=7% Similarity=-0.020 Sum_probs=23.0
Q ss_pred CeEEEEECCCCCEEEEEEcCCCEEEEEeC
Q 003907 371 PISALCFDPSGTLLVTASVYGNNINIFRI 399 (787)
Q Consensus 371 pIsaLaFSpdG~lLATaS~dG~~IrVWdi 399 (787)
.-..|+|+|+|++|..+....+.|+.++.
T Consensus 311 ~p~~ia~~p~G~~lYvaD~~~h~I~kid~ 339 (496)
T 3kya_A 311 WEFQIFIHPTGKYAYFGVINNHYFMRSDY 339 (496)
T ss_dssp CCEEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred CceEEEEcCCCCEEEEEeCCCCEEEEEec
Confidence 34789999999977777776787888664
No 283
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=77.14 E-value=1.3e+02 Score=35.93 Aligned_cols=95 Identities=17% Similarity=0.111 Sum_probs=55.7
Q ss_pred CceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEc-CCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEe
Q 003907 348 AGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASV-YGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLH 426 (787)
Q Consensus 348 dG~V~IwDl~s~~~v~~~~aH~~pIsaLaFSpdG~lLATaS~-dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~ 426 (787)
.+.|.+.|+........+...-.....|+++|.+.+|.-+.. ....|.+.++. |. ....+.
T Consensus 492 ~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~d--------G~----------~~~~lv 553 (791)
T 3m0c_C 492 LGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN--------GV----------DIYSLV 553 (791)
T ss_dssp TTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETT--------SC----------CEEEEE
T ss_pred CCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecC--------CC----------ceEEEE
Confidence 456777777654433333334445789999997555554443 22457777762 31 222222
Q ss_pred cccccccEEEEEEccCCCEEEEEe-CCCeEEEEeCC
Q 003907 427 RGITSATIQDICFSHYSQWIAIVS-SKGTCHVFVLS 461 (787)
Q Consensus 427 rG~~~a~I~slaFSpDg~~LAs~S-~dgTVhIwdl~ 461 (787)
.+ .-.....|++++++..|..+. ..+.|..++++
T Consensus 554 ~~-~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~d 588 (791)
T 3m0c_C 554 TE-NIQWPNGITLDLLSGRLYWVDSKLHSISSIDVN 588 (791)
T ss_dssp CS-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred eC-CCCCceEEEEecCCCeEEEEeCCCCcEEEEecC
Confidence 21 113478899998877776664 45678877775
No 284
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=76.68 E-value=1.2e+02 Score=35.41 Aligned_cols=95 Identities=14% Similarity=0.122 Sum_probs=57.3
Q ss_pred CCceEEEEECCCCcEEEEecc--------CCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCc
Q 003907 347 NAGIVVVKDFVTRAIISQFKA--------HTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSS 418 (787)
Q Consensus 347 ~dG~V~IwDl~s~~~v~~~~a--------H~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s 418 (787)
.+|-|..||..+++....... ....|.+++.+++|++|-.|+.++ -|.+||... +
T Consensus 375 ~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~-Gl~~~d~~~-------~--------- 437 (795)
T 4a2l_A 375 NDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAG-GLSILHRNS-------G--------- 437 (795)
T ss_dssp SSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTT-EEEEEETTT-------C---------
T ss_pred CCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcC-ceeEEeCCC-------C---------
Confidence 345677888776654332211 235799999999999444455534 388898643 2
Q ss_pred ceEEEEEec---ccccccEEEEEEccCCCEEEEEeCCCeEEEEeCCC
Q 003907 419 HVHLYKLHR---GITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSP 462 (787)
Q Consensus 419 ~~~l~~l~r---G~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~~ 462 (787)
....+.. +.....|.+|...++|+..+.+ .+| +.+|+...
T Consensus 438 --~~~~~~~~~~~l~~~~v~~i~~d~~g~lwigt-~~G-l~~~~~~~ 480 (795)
T 4a2l_A 438 --QVENFNQRNSQLVNENVYAILPDGEGNLWLGT-LSA-LVRFNPEQ 480 (795)
T ss_dssp --CEEEECTTTSCCSCSCEEEEEECSSSCEEEEE-SSC-EEEEETTT
T ss_pred --cEEEeecCCCCcCCCeeEEEEECCCCCEEEEe-cCc-eeEEeCCC
Confidence 1222221 1122469999999999855444 344 77787643
No 285
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=76.16 E-value=5.5 Score=46.19 Aligned_cols=94 Identities=13% Similarity=0.070 Sum_probs=60.5
Q ss_pred eEEEEECCCCcE--EEEec-cCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEe
Q 003907 350 IVVVKDFVTRAI--ISQFK-AHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLH 426 (787)
Q Consensus 350 ~V~IwDl~s~~~--v~~~~-aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~ 426 (787)
.+.+||..+++. +..+. .+..-..++++..+|++++.++.++..+.+||.... ...++.
T Consensus 220 ~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~yd~~t~------------------~W~~~~ 281 (656)
T 1k3i_A 220 LTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSLYDSSSD------------------SWIPGP 281 (656)
T ss_dssp EEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEEEEGGGT------------------EEEECC
T ss_pred EEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEEecCcCC------------------ceeECC
Confidence 578999988753 22332 234445568889999999999976767999997531 111111
Q ss_pred ccccccc-EEEEEEccCCCEEEEEe-CC-----CeEEEEeCCC
Q 003907 427 RGITSAT-IQDICFSHYSQWIAIVS-SK-----GTCHVFVLSP 462 (787)
Q Consensus 427 rG~~~a~-I~slaFSpDg~~LAs~S-~d-----gTVhIwdl~~ 462 (787)
.+.... -.++++-+||+.++.|+ .+ .++.+||...
T Consensus 282 -~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t 323 (656)
T 1k3i_A 282 -DMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSS 323 (656)
T ss_dssp -CCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTT
T ss_pred -CCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCC
Confidence 001011 12456668999999998 34 5789999864
No 286
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=76.01 E-value=79 Score=32.93 Aligned_cols=94 Identities=13% Similarity=0.040 Sum_probs=51.3
Q ss_pred ceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEc-CCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEec
Q 003907 349 GIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASV-YGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHR 427 (787)
Q Consensus 349 G~V~IwDl~s~~~v~~~~aH~~pIsaLaFSpdG~lLATaS~-dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~r 427 (787)
+.|.++|+........+......-..|+++|.+.+|.-+.. ....|..+++. |. .... -+..
T Consensus 101 ~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~d--------G~--------~~~~-~~~~ 163 (318)
T 3sov_A 101 NRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMD--------GS--------SRFI-IINS 163 (318)
T ss_dssp TEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETT--------SC--------SCEE-EECS
T ss_pred CEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcC--------CC--------CeEE-EEEC
Confidence 45666665543222222233345588999996555554443 23446666652 21 0111 1112
Q ss_pred ccccccEEEEEEccCCCEEEEE-eCCCeEEEEeCC
Q 003907 428 GITSATIQDICFSHYSQWIAIV-SSKGTCHVFVLS 461 (787)
Q Consensus 428 G~~~a~I~slaFSpDg~~LAs~-S~dgTVhIwdl~ 461 (787)
+. ..-..|+|+++++.|..+ +..+.|..++++
T Consensus 164 ~l--~~Pnglavd~~~~~lY~aD~~~~~I~~~d~d 196 (318)
T 3sov_A 164 EI--YWPNGLTLDYEEQKLYWADAKLNFIHKSNLD 196 (318)
T ss_dssp SC--SCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred CC--CCccEEEEeccCCEEEEEECCCCEEEEEcCC
Confidence 21 235789999987766655 456788888875
No 287
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=75.23 E-value=9.8 Score=41.18 Aligned_cols=97 Identities=11% Similarity=0.070 Sum_probs=57.5
Q ss_pred CceEEEEECCCC-c---EEEEeccC-CCCeEEEEECCCCCEEEEEEc---C-----------CCEEEEEeCCCCcccCCC
Q 003907 348 AGIVVVKDFVTR-A---IISQFKAH-TSPISALCFDPSGTLLVTASV---Y-----------GNNINIFRIMPSCMRSGS 408 (787)
Q Consensus 348 dG~V~IwDl~s~-~---~v~~~~aH-~~pIsaLaFSpdG~lLATaS~---d-----------G~~IrVWdi~~~~~~~~~ 408 (787)
.+.|.||++... . .+.++.+. -...+.++++++|++.+|... + ...=+||.+.+
T Consensus 138 ~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~------- 210 (355)
T 3sre_A 138 SSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP------- 210 (355)
T ss_dssp CCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT-------
T ss_pred CCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEEC-------
Confidence 457777776542 2 33344432 235789999999999988652 0 01123444422
Q ss_pred CCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEe-CCCeEEEEeCCCCC
Q 003907 409 GNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVS-SKGTCHVFVLSPFG 464 (787)
Q Consensus 409 g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~LAs~S-~dgTVhIwdl~~~g 464 (787)
+ .+..+..+.. .-..|+||||+++|..+. ..++|+.|++...+
T Consensus 211 ~-----------~~~~~~~~l~--~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g 254 (355)
T 3sre_A 211 N-----------DVRVVAEGFD--FANGINISPDGKYVYIAELLAHKIHVYEKHANW 254 (355)
T ss_dssp T-----------CCEEEEEEES--SEEEEEECTTSSEEEEEEGGGTEEEEEEECTTS
T ss_pred C-----------eEEEeecCCc--ccCcceECCCCCEEEEEeCCCCeEEEEEECCCC
Confidence 1 0111222221 247899999998877664 57899999998543
No 288
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=75.17 E-value=73 Score=34.86 Aligned_cols=73 Identities=12% Similarity=0.104 Sum_probs=43.5
Q ss_pred eEEEEECC-CCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEE-ecccccccEEEEEEccCCCEEEEE
Q 003907 372 ISALCFDP-SGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKL-HRGITSATIQDICFSHYSQWIAIV 449 (787)
Q Consensus 372 IsaLaFSp-dG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l-~rG~~~a~I~slaFSpDg~~LAs~ 449 (787)
-..++++| +|.+.++-.. ...|+.+|... | .....+ ..+.. ..-..|+|+|||++|..+
T Consensus 230 P~giavd~~~G~lyv~d~~-~~~V~~~d~~~-------g----------~~~~~~~~~~~~-~~~~~ia~dpdG~~LYva 290 (433)
T 4hw6_A 230 AKTCAVHPQNGKIYYTRYH-HAMISSYDPAT-------G----------TLTEEEVMMDTK-GSNFHIVWHPTGDWAYII 290 (433)
T ss_dssp BCCCEECTTTCCEEECBTT-CSEEEEECTTT-------C----------CEEEEEEECSCC-SSCEEEEECTTSSEEEEE
T ss_pred CCEEEEeCCCCeEEEEECC-CCEEEEEECCC-------C----------eEEEEEeccCCC-CCcccEEEeCCCCEEEEE
Confidence 35688999 7776655433 44577777632 2 111111 22211 123469999999955554
Q ss_pred -eCCCeEEEEeCCCC
Q 003907 450 -SSKGTCHVFVLSPF 463 (787)
Q Consensus 450 -S~dgTVhIwdl~~~ 463 (787)
...+.|..++++..
T Consensus 291 d~~~~~I~~~~~d~~ 305 (433)
T 4hw6_A 291 YNGKHCIYRVDYNRE 305 (433)
T ss_dssp ETTTTEEEEEEBCTT
T ss_pred eCCCCEEEEEeCCCC
Confidence 45688999887653
No 289
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=73.22 E-value=1.5e+02 Score=34.71 Aligned_cols=70 Identities=11% Similarity=0.183 Sum_probs=45.2
Q ss_pred CCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEE--ecccccccEEEEEEccCCCEE
Q 003907 369 TSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKL--HRGITSATIQDICFSHYSQWI 446 (787)
Q Consensus 369 ~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l--~rG~~~a~I~slaFSpDg~~L 446 (787)
...|.+|..+++|++.+.... | +..||... + ....+ ..|.....|.+|...++|+..
T Consensus 542 ~~~i~~i~~d~~g~lWigT~~-G--l~~~d~~~-------~-----------~~~~~~~~~gl~~~~i~~i~~d~~g~lW 600 (795)
T 4a2l_A 542 KLFTNCIYEASNGIIWVGTRE-G--FYCFNEKD-------K-----------QIKRYNTTNGLPNNVVYGILEDSFGRLW 600 (795)
T ss_dssp GSCEEEEEECTTSCEEEEESS-C--EEEEETTT-------T-----------EEEEECGGGTCSCSCEEEEEECTTSCEE
T ss_pred CCeeEEEEECCCCCEEEEeCC-C--ceeECCCC-------C-----------cEEEeCCCCCCchhheEEEEECCCCCEE
Confidence 457899999999998765443 3 77888642 1 22222 224334469999999999765
Q ss_pred EEEeCCCeEEEEeCC
Q 003907 447 AIVSSKGTCHVFVLS 461 (787)
Q Consensus 447 As~S~dgTVhIwdl~ 461 (787)
+++ .+| +..|+..
T Consensus 601 i~t-~~G-l~~~~~~ 613 (795)
T 4a2l_A 601 LST-NRG-ISCFNPE 613 (795)
T ss_dssp EEE-TTE-EEEEETT
T ss_pred EEc-CCc-eEEEcCC
Confidence 544 444 6666654
No 290
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=71.25 E-value=34 Score=35.14 Aligned_cols=82 Identities=15% Similarity=0.131 Sum_probs=54.5
Q ss_pred EeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEe-cccccccEEEEEEccC
Q 003907 364 QFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLH-RGITSATIQDICFSHY 442 (787)
Q Consensus 364 ~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~-rG~~~a~I~slaFSpD 442 (787)
.+.+-...++.|+|+|++..|.+.+.+...|...|.. | ..+.++. .|. ...-.|++.++
T Consensus 21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~--------g----------~v~~~i~l~g~--~D~EGIa~~~~ 80 (255)
T 3qqz_A 21 EIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN--------G----------DLIRTIPLDFV--KDLETIEYIGD 80 (255)
T ss_dssp ECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT--------C----------CEEEEEECSSC--SSEEEEEECST
T ss_pred ECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC--------C----------CEEEEEecCCC--CChHHeEEeCC
Confidence 3445556899999999877666655545445555542 2 2333332 222 34678999999
Q ss_pred CCEEEEEeCCCeEEEEeCCCCCC
Q 003907 443 SQWIAIVSSKGTCHVFVLSPFGG 465 (787)
Q Consensus 443 g~~LAs~S~dgTVhIwdl~~~gg 465 (787)
++++++.-.++.+.+|++...+.
T Consensus 81 g~~~vs~E~~~~l~~~~v~~~~~ 103 (255)
T 3qqz_A 81 NQFVISDERDYAIYVISLTPNSE 103 (255)
T ss_dssp TEEEEEETTTTEEEEEEECTTCC
T ss_pred CEEEEEECCCCcEEEEEcCCCCe
Confidence 98777766778999999987653
No 291
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=70.66 E-value=59 Score=33.08 Aligned_cols=95 Identities=16% Similarity=0.125 Sum_probs=52.5
Q ss_pred CCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcC-CCEEEEEeCCCCcccCCCCCCccccCCcceEEEEE
Q 003907 347 NAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVY-GNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKL 425 (787)
Q Consensus 347 ~dG~V~IwDl~s~~~v~~~~aH~~pIsaLaFSpdG~lLATaS~d-G~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l 425 (787)
..+.|..||.... ....+.. ......|+|+++|+++++.... +..|..+|... |. ...+..+
T Consensus 51 ~~~~I~~~d~~g~-~~~~~~~-~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~-------g~--------~~~~~~~ 113 (306)
T 2p4o_A 51 EVGEIVSITPDGN-QQIHATV-EGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSD-------GT--------VETLLTL 113 (306)
T ss_dssp TTTEEEEECTTCC-EEEEEEC-SSEEEEEEECTTSCEEEEEECTTSCEEEEEECTT-------SC--------EEEEEEC
T ss_pred CCCeEEEECCCCc-eEEEEeC-CCCceeEEEcCCCcEEEEeccCCcceEEEEcCCC-------Ce--------EEEEEeC
Confidence 4577888887653 3333322 2457899999999977655432 22344455422 21 1122222
Q ss_pred ecccccccEEEEEEccCCCEEEEEeCCCeEEEEeCC
Q 003907 426 HRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLS 461 (787)
Q Consensus 426 ~rG~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~ 461 (787)
.. ......+++.++++.+++-+.++.|.++|..
T Consensus 114 ~~---~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~ 146 (306)
T 2p4o_A 114 PD---AIFLNGITPLSDTQYLTADSYRGAIWLIDVV 146 (306)
T ss_dssp TT---CSCEEEEEESSSSEEEEEETTTTEEEEEETT
T ss_pred CC---ccccCcccccCCCcEEEEECCCCeEEEEeCC
Confidence 11 1123456666777666665568877777754
No 292
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=65.11 E-value=1.5e+02 Score=31.59 Aligned_cols=71 Identities=11% Similarity=-0.035 Sum_probs=43.0
Q ss_pred CCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEE
Q 003907 370 SPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIV 449 (787)
Q Consensus 370 ~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~LAs~ 449 (787)
..-+.|+|+|++..|.-+....+.|..+|+. |. .... .+..+ ......|++ .++..+.+-
T Consensus 246 ~~PnGlavd~~~~~lY~aD~~~~~I~~~d~d--------G~--------~~~~-~~~~~--~~~P~giav-~~~~ly~td 305 (386)
T 3v65_B 246 FWPNGLTIDYAGRRMYWVDAKHHVIERANLD--------GS--------HRKA-VISQG--LPHPFAITV-FEDSLYWTD 305 (386)
T ss_dssp SCEEEEEEEGGGTEEEEEETTTTEEEEECTT--------SC--------SCEE-EECSS--CSSEEEEEE-ETTEEEEEE
T ss_pred CCeeeEEEeCCCCEEEEEECCCCEEEEEeCC--------CC--------eeEE-EEECC--CCCceEEEE-ECCEEEEee
Confidence 3457899998877777777767778888863 21 0111 12112 123577888 344555555
Q ss_pred eCCCeEEEEeC
Q 003907 450 SSKGTCHVFVL 460 (787)
Q Consensus 450 S~dgTVhIwdl 460 (787)
...+.|..++.
T Consensus 306 ~~~~~V~~~~~ 316 (386)
T 3v65_B 306 WHTKSINSANK 316 (386)
T ss_dssp TTTTEEEEEET
T ss_pred CCCCeEEEEEC
Confidence 66777777763
No 293
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=63.75 E-value=1.7e+02 Score=31.84 Aligned_cols=99 Identities=12% Similarity=0.035 Sum_probs=57.5
Q ss_pred CceEEEEECCCCcEEEEe-ccCC-CCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEE
Q 003907 348 AGIVVVKDFVTRAIISQF-KAHT-SPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKL 425 (787)
Q Consensus 348 dG~V~IwDl~s~~~v~~~-~aH~-~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l 425 (787)
.+.|..+|..++.....+ .... ..-..|+|+|+|+.|..+....+.|+.++..... +. ......+
T Consensus 249 ~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d~~~-----~~--------~~~~~~~ 315 (433)
T 4hw6_A 249 HAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYNRET-----GK--------LAVPYIV 315 (433)
T ss_dssp CSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTEEEEEEBCTTT-----CC--------BCCCEEE
T ss_pred CCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCCCCC-----cc--------cCcEEEE
Confidence 467778887766552332 2111 1224699999999777777767778888763210 10 0000011
Q ss_pred ec-----cc--------ccccEEEEEE---------ccCCCEEEEEeCCCeEEEEe
Q 003907 426 HR-----GI--------TSATIQDICF---------SHYSQWIAIVSSKGTCHVFV 459 (787)
Q Consensus 426 ~r-----G~--------~~a~I~slaF---------SpDg~~LAs~S~dgTVhIwd 459 (787)
.. |. .-..-..|+| .++|++.++-+..+.|+.++
T Consensus 316 ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~ 371 (433)
T 4hw6_A 316 CGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLT 371 (433)
T ss_dssp EECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEEC
T ss_pred EecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEEC
Confidence 00 00 0113578999 78888777777778888876
No 294
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=61.69 E-value=21 Score=41.38 Aligned_cols=29 Identities=14% Similarity=0.210 Sum_probs=23.4
Q ss_pred EEEEEecccccccEEEEEEccCCCEEEEE
Q 003907 421 HLYKLHRGITSATIQDICFSHYSQWIAIV 449 (787)
Q Consensus 421 ~l~~l~rG~~~a~I~slaFSpDg~~LAs~ 449 (787)
.++.|.++...++++.++|+||++.|.+.
T Consensus 520 ~~~rf~~~P~gaE~TG~~fspDg~tlfvn 548 (592)
T 3zwu_A 520 EIRRFMVGPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp CEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred eEEEEEeCCCCccCcCeeECCCCCEEEEE
Confidence 56777777777899999999999877554
No 295
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=61.42 E-value=1.5e+02 Score=30.28 Aligned_cols=73 Identities=16% Similarity=0.226 Sum_probs=46.7
Q ss_pred CCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEeccccc-----ccEEEEEEccCCC
Q 003907 370 SPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITS-----ATIQDICFSHYSQ 444 (787)
Q Consensus 370 ~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~-----a~I~slaFSpDg~ 444 (787)
..+++|+|+|.-..|..-|...+.+-++|.. | .....+.|.+|.+. ..--.|+|.++|+
T Consensus 173 ~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~--------g--------~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~ 236 (255)
T 3qqz_A 173 DDVSGAEFNQQKNTLLVLSHESRALQEVTLV--------G--------EVIGEMSLTKGSRGLSHNIKQAEGVAMDASGN 236 (255)
T ss_dssp SCCCEEEEETTTTEEEEEETTTTEEEEECTT--------C--------CEEEEEECSTTGGGCSSCCCSEEEEEECTTCC
T ss_pred CCceeEEEcCCCCeEEEEECCCCeEEEEcCC--------C--------CEEEEEEcCCccCCcccccCCCCeeEECCCCC
Confidence 3568899999654555556668888888863 2 12344566655322 1357899999998
Q ss_pred EEEEEeCCCeEEEEe
Q 003907 445 WIAIVSSKGTCHVFV 459 (787)
Q Consensus 445 ~LAs~S~dgTVhIwd 459 (787)
|.++|.-+-+.+|.
T Consensus 237 -lyIvsE~n~~y~f~ 250 (255)
T 3qqz_A 237 -IYIVSEPNRFYRFT 250 (255)
T ss_dssp -EEEEETTTEEEEEE
T ss_pred -EEEEcCCceEEEEE
Confidence 55557777555553
No 296
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=49.53 E-value=1.3e+02 Score=32.17 Aligned_cols=105 Identities=13% Similarity=0.105 Sum_probs=62.1
Q ss_pred CCceEEEEECCCCcEEE-Eecc----CCC--CeEEEEE---CCCCCEEEEEEc------------CCCEEEEEeCCCCcc
Q 003907 347 NAGIVVVKDFVTRAIIS-QFKA----HTS--PISALCF---DPSGTLLVTASV------------YGNNINIFRIMPSCM 404 (787)
Q Consensus 347 ~dG~V~IwDl~s~~~v~-~~~a----H~~--pIsaLaF---SpdG~lLATaS~------------dG~~IrVWdi~~~~~ 404 (787)
..|+|..||...+.... .+.. ... .+..|.| +|+|++++.+.. ....+..||+.-.
T Consensus 33 ~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g~~~~g~~~v~~~Dl~~~-- 110 (334)
T 2p9w_A 33 YKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFADQSSHGASSFHSFNLPLS-- 110 (334)
T ss_dssp TTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTSCCSSSCCEEEEEESSCC--
T ss_pred cCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccccccccccccCCCCEEEEEcCCcC--
Confidence 56889999987554332 3332 111 3578999 799999986431 1345788887400
Q ss_pred cCCCCCCccccCCcceEEEEEec---------ccccccEEEEEEccCCCEEEEEeCC-CeEEEEeCCCCCC
Q 003907 405 RSGSGNHKYDWNSSHVHLYKLHR---------GITSATIQDICFSHYSQWIAIVSSK-GTCHVFVLSPFGG 465 (787)
Q Consensus 405 ~~~~g~~~~~~~~s~~~l~~l~r---------G~~~a~I~slaFSpDg~~LAs~S~d-gTVhIwdl~~~gg 465 (787)
.++. ......|.. |.......+|+..++|+.-++.+.- +. ||.+.+.|.
T Consensus 111 --~tg~--------~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~--I~rV~pdG~ 169 (334)
T 2p9w_A 111 --ENSK--------PVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPA--IARVSADGK 169 (334)
T ss_dssp --TTCC--------CSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCE--EEEECTTSC
T ss_pred --CCCC--------EEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCe--EEEEeCCCC
Confidence 0010 011122210 1011247899999999998888876 65 667776554
No 297
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=47.55 E-value=3.7e+02 Score=30.76 Aligned_cols=175 Identities=11% Similarity=-0.007 Sum_probs=0.0
Q ss_pred CEEEEEECCCC--eEEEEEeCCCcEEEEEecC--CeEEEEe--CCeEEEEECCCCceeEEEEecCCcccCCCCccccccc
Q 003907 173 TAVRFYSFQSH--CYEHVLRFRSSVCMVRCSP--RIVAVGL--ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVG 246 (787)
Q Consensus 173 ~tVrlWdlktg--~~v~tL~f~s~V~sV~~s~--~~LaV~~--~~~I~iwD~~T~e~l~tl~t~p~p~~~~~~~~~~~~~ 246 (787)
+.|+..|+... +......--..+.+|+++. +.|.++. .++|+.+++.......++...... .
T Consensus 18 ~~I~~i~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~------------~ 85 (619)
T 3s94_A 18 RDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLL------------S 85 (619)
T ss_dssp SBEEEECCC---------CBCCSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCS------------C
T ss_pred ccEEEEeCCCCcceEEEEEcCCCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCC------------C
Q ss_pred cceeEEcc--ceEEEecCCceecCcceeccccCCCCCcCCCcCCCCCceeEeeehhhhhhhhcccceeecccccccCCCC
Q 003907 247 YGPMAVGP--RWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDG 324 (787)
Q Consensus 247 ~~~lAlsp--r~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~ 324 (787)
..-+|+.+ +.|-.+.
T Consensus 86 P~GlAvD~~~~~ly~~d--------------------------------------------------------------- 102 (619)
T 3s94_A 86 PDGLACDWLGEKLYWTD--------------------------------------------------------------- 102 (619)
T ss_dssp EEEEEEETTTTEEEEEE---------------------------------------------------------------
T ss_pred cCeEEEEecCCEEEEEe---------------------------------------------------------------
Q ss_pred CCCCcccCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcc
Q 003907 325 SSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCM 404 (787)
Q Consensus 325 s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~ 404 (787)
...+.|.+.|+........+...-..-..|+++|.+.+|.-+.. |..-+||.....
T Consensus 103 ---------------------~~~~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~-g~~~~I~r~~~d-- 158 (619)
T 3s94_A 103 ---------------------SETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDW-GEVPKIERAGMD-- 158 (619)
T ss_dssp ---------------------TTTTEEEEEETTSCSCEEEECSSCSCCCCEEEETTTTEEEEEEC-SSSCEEEEEETT--
T ss_pred ---------------------CCCCEEEEEECCCCCEEEEEeCCCCCCceEEEecCCCeEEEecc-CCCCEEEEEECC--
Q ss_pred cCCCCCCccccCCcceEEEEEecccccccEEEEEEcc-CCCEEEEEeCCCeEEEEeCC
Q 003907 405 RSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSH-YSQWIAIVSSKGTCHVFVLS 461 (787)
Q Consensus 405 ~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSp-Dg~~LAs~S~dgTVhIwdl~ 461 (787)
| .....+-.. .-.....|++++ +++...+-+..++|..++++
T Consensus 159 ----G----------~~~~~l~~~-~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~d 201 (619)
T 3s94_A 159 ----G----------SSRFIIINS-EIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLD 201 (619)
T ss_dssp ----S----------CSCEEEECS-SCSSEEEEEEETTTTEEEEEETTTCCEEEESSS
T ss_pred ----C----------CceEEEEeC-CCCCCcEEEEEccCCEEEEEeCCCCeEEEecCC
No 298
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=47.17 E-value=93 Score=39.93 Aligned_cols=106 Identities=9% Similarity=0.195 Sum_probs=64.3
Q ss_pred CceEEEEECCCCcEEEEeccCCCCeEEEEE-CCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEe
Q 003907 348 AGIVVVKDFVTRAIISQFKAHTSPISALCF-DPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLH 426 (787)
Q Consensus 348 dG~V~IwDl~s~~~v~~~~aH~~pIsaLaF-SpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~ 426 (787)
..+++|+|+.++..+..+.-. .+|..=.| |++---|+| ++.|--|++... +...++++.+
T Consensus 85 g~~lQiFnl~~k~klks~~~~-e~VvfWkWis~~~l~lVT----~~aVyHW~~~~~--------------s~P~k~fdR~ 145 (1630)
T 1xi4_A 85 GKTLQIFNIEMKSKMKAHTMT-DDVTFWKWISLNTVALVT----DNAVYHWSMEGE--------------SQPVKMFDRH 145 (1630)
T ss_pred CCeEEEeehHHhhhhcccccC-CCceEEEecCCCeeEEEc----CCeEEEeccCCC--------------CccHHHHhcc
Confidence 468999999988765554433 36666666 443333444 335899998420 0112333322
Q ss_pred cccccccEEEEEEccCCCEEEEEeC-------CCeEEEEeCCCCCCcccccccc
Q 003907 427 RGITSATIQDICFSHYSQWIAIVSS-------KGTCHVFVLSPFGGDSGFQTLS 473 (787)
Q Consensus 427 rG~~~a~I~slaFSpDg~~LAs~S~-------dgTVhIwdl~~~gg~~~~~~H~ 473 (787)
.-..+..|.+-.-++|.+|++..+- .|.+.+|.++.. ....+.+|.
T Consensus 146 ~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~-~sQ~iegha 198 (1630)
T 1xi4_A 146 SSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHA 198 (1630)
T ss_pred hhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccc-cchhhhHhH
Confidence 1122346888889999999986543 478888888753 344566663
No 299
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=45.88 E-value=90 Score=33.04 Aligned_cols=94 Identities=15% Similarity=0.145 Sum_probs=47.3
Q ss_pred CCCceEEEEECCCCc-EEEEec---cCCCCeEEEEECCC----CCEEEEEEc---CC---CEEEEEeCCCCcccCCCCCC
Q 003907 346 DNAGIVVVKDFVTRA-IISQFK---AHTSPISALCFDPS----GTLLVTASV---YG---NNINIFRIMPSCMRSGSGNH 411 (787)
Q Consensus 346 ~~dG~V~IwDl~s~~-~v~~~~---aH~~pIsaLaFSpd----G~lLATaS~---dG---~~IrVWdi~~~~~~~~~g~~ 411 (787)
+..|.|+++| .+++ .+..+. ........|+|+|+ |.+.++-+. ++ +.|..|+.... .+.
T Consensus 46 e~~g~I~~~d-~~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~v~r~~~~~~-----~~~- 118 (354)
T 3a9g_A 46 ERPGRLVLIS-PSGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNRVIRGRLDGS-----TFK- 118 (354)
T ss_dssp ETTTEEEEEC-SSCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEEEEEEEECSS-----SCC-
T ss_pred eCCCEEEEEe-CCCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceEEEEEEECCC-----CcC-
Confidence 3458888887 3443 333322 12345789999997 666665542 11 34555654320 000
Q ss_pred ccccCCcceEEEE-EecccccccEEEEEEccCCCEEEEEeC
Q 003907 412 KYDWNSSHVHLYK-LHRGITSATIQDICFSHYSQWIAIVSS 451 (787)
Q Consensus 412 ~~~~~~s~~~l~~-l~rG~~~a~I~slaFSpDg~~LAs~S~ 451 (787)
.. ..+.+.. +..+.. ..-..|+|.|||++.++.++
T Consensus 119 ---~~-~~~~l~~~~~~~~~-h~~~~l~~~pDG~Lyvt~G~ 154 (354)
T 3a9g_A 119 ---LK-EVKTLIDGIPGAYI-HNGGRIRFGPDGMLYITTGD 154 (354)
T ss_dssp ---EE-EEEEEEEEEECCSS-CCCCCEEECTTSCEEEECCC
T ss_pred ---cC-ccEEEEEcCCCCCC-cCCceEEECCCCcEEEEECC
Confidence 00 0112222 221111 12467999999986666544
No 300
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=45.80 E-value=1.5e+02 Score=30.53 Aligned_cols=72 Identities=15% Similarity=0.168 Sum_probs=45.8
Q ss_pred cCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEE
Q 003907 367 AHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWI 446 (787)
Q Consensus 367 aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~L 446 (787)
.+...+.+++|+|+|++++.+.. |...+-+|-. |. . .. .+..+ ....+.+++++++++.+
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~g~~-G~~~~S~d~g--------G~-------t-W~--~~~~~-~~~~~~~~~~~~~g~~~ 219 (327)
T 2xbg_A 160 EAIGVMRNLNRSPSGEYVAVSSR-GSFYSTWEPG--------QT-------A-WE--PHNRT-TSRRLHNMGFTPDGRLW 219 (327)
T ss_dssp SCCCCEEEEEECTTSCEEEEETT-SSEEEEECTT--------CS-------S-CE--EEECC-SSSCEEEEEECTTSCEE
T ss_pred CCCcceEEEEEcCCCcEEEEECC-CcEEEEeCCC--------CC-------c-ee--ECCCC-CCCccceeEECCCCCEE
Confidence 45567899999999999887654 7755555420 10 0 11 12222 23458899999999866
Q ss_pred EEEeCCCeEEEEe
Q 003907 447 AIVSSKGTCHVFV 459 (787)
Q Consensus 447 As~S~dgTVhIwd 459 (787)
+ ++.+|.+.+.+
T Consensus 220 ~-~~~~G~~~~s~ 231 (327)
T 2xbg_A 220 M-IVNGGKIAFSD 231 (327)
T ss_dssp E-EETTTEEEEEE
T ss_pred E-EeCCceEEEec
Confidence 4 45678776653
No 301
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=44.88 E-value=2.8e+02 Score=28.62 Aligned_cols=72 Identities=13% Similarity=-0.090 Sum_probs=43.6
Q ss_pred CeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEe
Q 003907 371 PISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVS 450 (787)
Q Consensus 371 pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~LAs~S 450 (787)
.-+.|+|+|++..|.-+......|..+|+. |. ... .+..+. ......|++..+ ..+.+-.
T Consensus 167 ~Pnglavd~~~~~lY~aD~~~~~I~~~d~d--------G~--------~~~--~~~~~~-~~~P~glav~~~-~lywtd~ 226 (318)
T 3sov_A 167 WPNGLTLDYEEQKLYWADAKLNFIHKSNLD--------GT--------NRQ--AVVKGS-LPHPFALTLFED-ILYWTDW 226 (318)
T ss_dssp CEEEEEEETTTTEEEEEETTTTEEEEEETT--------SC--------SCE--EEECSC-CSCEEEEEEETT-EEEEEET
T ss_pred CccEEEEeccCCEEEEEECCCCEEEEEcCC--------CC--------ceE--EEecCC-CCCceEEEEeCC-EEEEEec
Confidence 347899999877777777767778888873 21 012 122211 123567887543 4445555
Q ss_pred CCCeEEEEeCCC
Q 003907 451 SKGTCHVFVLSP 462 (787)
Q Consensus 451 ~dgTVhIwdl~~ 462 (787)
..+.|..++...
T Consensus 227 ~~~~V~~~~~~~ 238 (318)
T 3sov_A 227 STHSILACNKYT 238 (318)
T ss_dssp TTTEEEEEETTT
T ss_pred CCCeEEEEECCC
Confidence 667777777643
No 302
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=44.47 E-value=60 Score=34.93 Aligned_cols=63 Identities=8% Similarity=0.191 Sum_probs=40.3
Q ss_pred CeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEcc-CCCEEEEE
Q 003907 371 PISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSH-YSQWIAIV 449 (787)
Q Consensus 371 pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSp-Dg~~LAs~ 449 (787)
--+.|+|||||+.|..+......|.+|++... |. ......+.+ ....-.+++.+ ||++.+++
T Consensus 222 ~pNGia~spDg~~lYvadt~~~~I~~~~~~~~------g~------l~~~~~~~~-----~g~PDGi~vD~e~G~lwva~ 284 (355)
T 3sre_A 222 FANGINISPDGKYVYIAELLAHKIHVYEKHAN------WT------LTPLRVLSF-----DTLVDNISVDPVTGDLWVGC 284 (355)
T ss_dssp SEEEEEECTTSSEEEEEEGGGTEEEEEEECTT------SC------EEEEEEEEC-----SSEEEEEEECTTTCCEEEEE
T ss_pred ccCcceECCCCCEEEEEeCCCCeEEEEEECCC------Cc------EecCEEEeC-----CCCCceEEEeCCCCcEEEEe
Confidence 45789999999988888776777999998531 21 000122211 23456788888 58766655
Q ss_pred e
Q 003907 450 S 450 (787)
Q Consensus 450 S 450 (787)
.
T Consensus 285 ~ 285 (355)
T 3sre_A 285 H 285 (355)
T ss_dssp E
T ss_pred c
Confidence 4
No 303
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=43.54 E-value=2.6e+02 Score=27.78 Aligned_cols=50 Identities=12% Similarity=0.086 Sum_probs=27.8
Q ss_pred CEEEEEECCCCe---EEEEEeCCC---cEEEEEecCCeEEEEe------CCeEEEEECCCCc
Q 003907 173 TAVRFYSFQSHC---YEHVLRFRS---SVCMVRCSPRIVAVGL------ATQIYCFDALTLE 222 (787)
Q Consensus 173 ~tVrlWdlktg~---~v~tL~f~s---~V~sV~~s~~~LaV~~------~~~I~iwD~~T~e 222 (787)
+.+.+||+.+++ -...-..+. .-..+.++.+++++|. .+.+++||+.+.+
T Consensus 78 ~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~ 139 (301)
T 2vpj_A 78 SSVECLDYTADEDGVWYSVAPMNVRRGLAGATTLGDMIYVSGGFDGSRRHTSMERYDPNIDQ 139 (301)
T ss_dssp CCEEEEETTCCTTCCCEEECCCSSCCBSCEEEEETTEEEEECCBCSSCBCCEEEEEETTTTE
T ss_pred ceEEEEECCCCCCCeeEECCCCCCCccceeEEEECCEEEEEcccCCCcccceEEEEcCCCCe
Confidence 578899998876 222212221 2233344556666653 1357888877654
No 304
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=42.62 E-value=4.5e+02 Score=30.37 Aligned_cols=92 Identities=13% Similarity=0.081 Sum_probs=54.4
Q ss_pred CceEEEEECCCCcEEEEe----ccCCCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEE
Q 003907 348 AGIVVVKDFVTRAIISQF----KAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLY 423 (787)
Q Consensus 348 dG~V~IwDl~s~~~v~~~----~aH~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~ 423 (787)
++-+.+||..+++.. .+ ......|.+|+.+++|++.+ |+.++ -+.+||... + .+.
T Consensus 382 ~~Gl~~~~~~~~~~~-~~~~~~~~~~~~v~~i~~d~~g~lWi-gt~~~-Gl~~~~~~~-------~-----------~~~ 440 (781)
T 3v9f_A 382 GGGINVFENGKRVAI-YNKENRELLSNSVLCSLKDSEGNLWF-GTYLG-NISYYNTRL-------K-----------KFQ 440 (781)
T ss_dssp SSCEEEEETTEEEEE-CC-----CCCSBEEEEEECTTSCEEE-EETTE-EEEEECSSS-------C-----------EEE
T ss_pred CCcEEEEECCCCeEE-EccCCCCCCCcceEEEEECCCCCEEE-EeccC-CEEEEcCCC-------C-----------cEE
Confidence 445777777654322 22 12346799999999999877 44423 377787632 1 222
Q ss_pred EEec-ccccccEEEEEEccCCCEEEEEeCCCeEEEEeCCC
Q 003907 424 KLHR-GITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSP 462 (787)
Q Consensus 424 ~l~r-G~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~~ 462 (787)
.+.. +.....|.+|...++|+..+ ++. +-+.+|+...
T Consensus 441 ~~~~~~~~~~~v~~i~~d~~g~lwi-gt~-~Gl~~~~~~~ 478 (781)
T 3v9f_A 441 IIELEKNELLDVRVFYEDKNKKIWI-GTH-AGVFVIDLAS 478 (781)
T ss_dssp ECCSTTTCCCCEEEEEECTTSEEEE-EET-TEEEEEESSS
T ss_pred EeccCCCCCCeEEEEEECCCCCEEE-EEC-CceEEEeCCC
Confidence 2221 22234699999999887544 444 4577787653
No 305
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=42.15 E-value=97 Score=32.64 Aligned_cols=90 Identities=10% Similarity=0.040 Sum_probs=46.1
Q ss_pred CCceEEEEECCCCc--EEEEec---cCCCCeEEEEECCC----CCEEEEEEcCC----CEEEEEeCCCCcccCCCCCCcc
Q 003907 347 NAGIVVVKDFVTRA--IISQFK---AHTSPISALCFDPS----GTLLVTASVYG----NNINIFRIMPSCMRSGSGNHKY 413 (787)
Q Consensus 347 ~dG~V~IwDl~s~~--~v~~~~---aH~~pIsaLaFSpd----G~lLATaS~dG----~~IrVWdi~~~~~~~~~g~~~~ 413 (787)
..|.|.+++ +++ .+..+. ........|+|+|+ |.+.++-+..+ +.|..|+... +.
T Consensus 49 ~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~r~~~~~-------~~--- 116 (352)
T 2ism_A 49 RPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVVRLRHLG-------ER--- 116 (352)
T ss_dssp TTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEEEEEECS-------SC---
T ss_pred CCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEEEEEEeCC-------CC---
Confidence 348888888 333 222222 12346789999998 55555544321 3466666531 10
Q ss_pred ccCCcceEEEE-Ee--cccccccEEEEEEccCCCEEEEEeC
Q 003907 414 DWNSSHVHLYK-LH--RGITSATIQDICFSHYSQWIAIVSS 451 (787)
Q Consensus 414 ~~~~s~~~l~~-l~--rG~~~a~I~slaFSpDg~~LAs~S~ 451 (787)
+. ..+.+.+ +. .+. ......|+|.|||.+.++.++
T Consensus 117 -~~-~~~~l~~~~p~~~~~-~h~~~~l~~~pdG~Lyv~~G~ 154 (352)
T 2ism_A 117 -GV-LDRVVLDGIPARPHG-LHSGGRIAFGPDGMLYVTTGE 154 (352)
T ss_dssp -EE-EEEEEEEEECCCTTC-CCCCCCEEECTTSCEEEECCC
T ss_pred -cC-ceEEEEEeCCCCCCC-CcCCceEEECCCCCEEEEECC
Confidence 00 0112222 32 111 112357999999976555443
No 306
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=41.49 E-value=3e+02 Score=28.03 Aligned_cols=75 Identities=7% Similarity=-0.110 Sum_probs=45.1
Q ss_pred CCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEE
Q 003907 370 SPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIV 449 (787)
Q Consensus 370 ~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~LAs~ 449 (787)
..-+.|+|+|++..|..+....+.|.++|+. |. ..+.+.. .+..-.....|++. .++.+.+-
T Consensus 164 ~~P~gla~d~~~~~lY~~D~~~~~I~~~d~d--------g~-------~~~~~~~--~~~~~~~P~giav~-~~~ly~~d 225 (316)
T 1ijq_A 164 QWPNGITLDLLSGRLYWVDSKLHSISSIDVN--------GG-------NRKTILE--DEKRLAHPFSLAVF-EDKVFWTD 225 (316)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETT--------SC-------SCEEEEE--CTTTTSSEEEEEEE-TTEEEEEE
T ss_pred CCceEEEEeccCCEEEEEECCCCeEEEEecC--------CC-------ceEEEee--cCCccCCcEEEEEE-CCEEEEEE
Confidence 3457899999887777777766678999873 21 0012211 11111235678885 35555555
Q ss_pred eCCCeEEEEeCCC
Q 003907 450 SSKGTCHVFVLSP 462 (787)
Q Consensus 450 S~dgTVhIwdl~~ 462 (787)
...+.|..++...
T Consensus 226 ~~~~~V~~~~~~~ 238 (316)
T 1ijq_A 226 IINEAIFSANRLT 238 (316)
T ss_dssp TTTTEEEEEETTT
T ss_pred CCCCeEEEEeCCC
Confidence 6677888877543
No 307
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=40.39 E-value=1.2e+02 Score=33.57 Aligned_cols=64 Identities=14% Similarity=0.210 Sum_probs=36.7
Q ss_pred CeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEeccc----ccccEEEEEEccC---C
Q 003907 371 PISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGI----TSATIQDICFSHY---S 443 (787)
Q Consensus 371 pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~----~~a~I~slaFSpD---g 443 (787)
.-..|+|.|+|++|++-.. |..|++++... |. ...+..+.... ...-+..|+|+|| +
T Consensus 28 ~P~~~a~~pdG~l~V~e~~-gg~I~~~~~~~-------g~--------~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~ 91 (454)
T 1cru_A 28 KPHALLWGPDNQIWLTERA-TGKILRVNPES-------GS--------VKTVFQVPEIVNDADGQNGLLGFAFHPDFKNN 91 (454)
T ss_dssp SEEEEEECTTSCEEEEETT-TCEEEEECTTT-------CC--------EEEEEECTTCCCCTTSSCSEEEEEECTTTTTS
T ss_pred CceEEEEcCCCcEEEEEcC-CCEEEEEECCC-------Cc--------EeEEecCCccccccCCCCceeEEEECCCcCcC
Confidence 3468999999998887544 54466665321 21 12222332111 1124779999996 5
Q ss_pred CEEEEEe
Q 003907 444 QWIAIVS 450 (787)
Q Consensus 444 ~~LAs~S 450 (787)
.+|.++.
T Consensus 92 g~lYv~~ 98 (454)
T 1cru_A 92 PYIYISG 98 (454)
T ss_dssp CEEEEEE
T ss_pred CEEEEEE
Confidence 5655554
No 308
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=37.82 E-value=1e+02 Score=35.65 Aligned_cols=61 Identities=21% Similarity=0.334 Sum_probs=37.9
Q ss_pred eEEEEECCCCCEEEEEEcC----------CCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEcc
Q 003907 372 ISALCFDPSGTLLVTASVY----------GNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSH 441 (787)
Q Consensus 372 IsaLaFSpdG~lLATaS~d----------G~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSp 441 (787)
-..|+|+++|.+...-... +. =.||-+.+. .| .+..+..+...+.++.++|||
T Consensus 478 PDnL~fd~~G~LWf~TD~~~~~~g~~~~~gn-n~v~~~dp~-----tG-----------el~~fl~~P~~aEpnGiafSP 540 (592)
T 4a9v_A 478 PDGLGFDKAGRLWILTDGDSSNAGDFAGMGN-NQMLCADPA-----TG-----------EIRRFMVGPIGCEVTGISFSP 540 (592)
T ss_dssp EEEEEECTTCCEEEEECCCCCCSGGGTTCCS-CEEEEECTT-----TC-----------CEEEEEECCTTCEEEEEEECT
T ss_pred CCceEECCCCCEEEEeCCCcCccccccccCC-ceEEEEeCC-----CC-----------eEEEEEeCCCCccccCCEECC
Confidence 4579999999988733210 11 144544331 12 344444444446799999999
Q ss_pred CCCEEEEE
Q 003907 442 YSQWIAIV 449 (787)
Q Consensus 442 Dg~~LAs~ 449 (787)
|++.|.++
T Consensus 541 D~ktLfV~ 548 (592)
T 4a9v_A 541 DQKTLFVG 548 (592)
T ss_dssp TSSEEEEE
T ss_pred CCCEEEEE
Confidence 99988776
No 309
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=34.98 E-value=3.6e+02 Score=29.73 Aligned_cols=101 Identities=12% Similarity=0.154 Sum_probs=52.0
Q ss_pred CCCceEEEEECCCC---cEEEEec---c------CCCCeEEEEECCC----CCEEEEEEcCCC---------EEEE--Ee
Q 003907 346 DNAGIVVVKDFVTR---AIISQFK---A------HTSPISALCFDPS----GTLLVTASVYGN---------NINI--FR 398 (787)
Q Consensus 346 ~~dG~V~IwDl~s~---~~v~~~~---a------H~~pIsaLaFSpd----G~lLATaS~dG~---------~IrV--Wd 398 (787)
...|.|++++.... +.+..+. + ....+..|+|+|+ |.+.++-+.+.. ..+| |.
T Consensus 33 er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~~~~~~~~~~~~~~~v~r~~ 112 (463)
T 2wg3_C 33 EKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTNQERWAIGPHDHILRVVEYT 112 (463)
T ss_dssp ETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEECCCSSCSSSSCEEEEEEEEE
T ss_pred eCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCCCCCcccCCcccceEEEEEE
Confidence 45688888865322 1223322 1 1456788999996 776666553211 1344 55
Q ss_pred CCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCC
Q 003907 399 IMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKG 453 (787)
Q Consensus 399 i~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~LAs~S~dg 453 (787)
+... .....+. .+.+.+.++........-..|+|.|||++.++.++.+
T Consensus 113 ~~~~------~~~~~d~-~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd~~ 160 (463)
T 2wg3_C 113 VSRK------NPHQVDL-RTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGDGM 160 (463)
T ss_dssp BCTT------CTTSBCG-GGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECCTT
T ss_pred EcCC------CCCccCC-CCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCCCC
Confidence 4320 0000111 1123444443211122468899999998777766654
No 310
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=34.25 E-value=49 Score=38.82 Aligned_cols=96 Identities=17% Similarity=0.087 Sum_probs=52.9
Q ss_pred CCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEc-CCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEE
Q 003907 347 NAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASV-YGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKL 425 (787)
Q Consensus 347 ~dG~V~IwDl~s~~~v~~~~aH~~pIsaLaFSpdG~lLATaS~-dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l 425 (787)
..+.|.++|+........+.........|+++|.+.+|.-+.. ....|.++++. |. ....+
T Consensus 473 ~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~d--------G~----------~~~~l 534 (699)
T 1n7d_A 473 VLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN--------GV----------DIYSL 534 (699)
T ss_dssp TTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSS--------SC----------CCCEE
T ss_pred cCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCC--------CC----------CeeEE
Confidence 3577888988765544434333334578999996554444433 21335555542 21 11111
Q ss_pred ecccccccEEEEEEccCCCEEEE-EeCCCeEEEEeCC
Q 003907 426 HRGITSATIQDICFSHYSQWIAI-VSSKGTCHVFVLS 461 (787)
Q Consensus 426 ~rG~~~a~I~slaFSpDg~~LAs-~S~dgTVhIwdl~ 461 (787)
... .-..-..|+|+|++++|.. -+..++|.+++++
T Consensus 535 ~~~-~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~d 570 (699)
T 1n7d_A 535 VTE-NIQWPNGITLDLLSGRLYWVDSKLHSISSIDVN 570 (699)
T ss_dssp SCS-SCSSCCCEEECTTTCCEEEEETTTTEEEEECSS
T ss_pred EeC-CCCCccEEEEeccCCEEEEEecCCCeEEEEccC
Confidence 110 0112457999998655544 4566788888875
No 311
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=33.64 E-value=1.6e+02 Score=33.25 Aligned_cols=65 Identities=15% Similarity=0.191 Sum_probs=40.8
Q ss_pred CeEEEEECCC-CCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEec-ccc-cccEEEEEE-------c
Q 003907 371 PISALCFDPS-GTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHR-GIT-SATIQDICF-------S 440 (787)
Q Consensus 371 pIsaLaFSpd-G~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~r-G~~-~a~I~slaF-------S 440 (787)
.-..|+|+|. +..|..+...++.|++.|+.. ..+..+-. +.. ......|+| +
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~------------------~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d 201 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKN------------------RMLSSPLNINTIPTNRIRSIAFNKKIEGYA 201 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTT------------------TEEEEEECCTTSSCSBEEEEEECCCBTTTB
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCC------------------CEEEEEEccCccccCCCcEEEEeecccccC
Confidence 3568999993 444444444456688888743 24444432 211 124899999 9
Q ss_pred cCCCEEEEEeCCC
Q 003907 441 HYSQWIAIVSSKG 453 (787)
Q Consensus 441 pDg~~LAs~S~dg 453 (787)
+||++|.++...+
T Consensus 202 ~~G~~lyvad~~~ 214 (496)
T 3kya_A 202 DEAEYMIVAIDYD 214 (496)
T ss_dssp CTTCEEEEEECCC
T ss_pred CCCCEEEEEeCCC
Confidence 9999777776654
No 312
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=33.55 E-value=6.7e+02 Score=29.70 Aligned_cols=30 Identities=10% Similarity=-0.028 Sum_probs=23.7
Q ss_pred CCeEEEEECCCCCEEEEEEcCCCEEEEEeC
Q 003907 370 SPISALCFDPSGTLLVTASVYGNNINIFRI 399 (787)
Q Consensus 370 ~pIsaLaFSpdG~lLATaS~dG~~IrVWdi 399 (787)
..-+.|++++.+..|.-+......|.++++
T Consensus 558 ~~P~GLavD~~~~~LYwaD~~~~~I~~~d~ 587 (791)
T 3m0c_C 558 QWPNGITLDLLSGRLYWVDSKLHSISSIDV 587 (791)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred CCceEEEEecCCCeEEEEeCCCCcEEEEec
Confidence 457889999887777777776677888887
No 313
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=33.15 E-value=6e+02 Score=29.04 Aligned_cols=180 Identities=13% Similarity=0.011 Sum_probs=0.0
Q ss_pred CcEEEEEEcCCCCCCCCCCCcCCCCCcccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCC--cEEEEEecC--CeE
Q 003907 130 HPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRS--SVCMVRCSP--RIV 205 (787)
Q Consensus 130 rpLLavV~~d~~~~~~~~~~~~~~~~~r~g~~~~~~~~~~~~p~tVrlWdlktg~~v~tL~f~s--~V~sV~~s~--~~L 205 (787)
.|+|++... ..|+..|+.+.+....+...+ .+.+|++++ +.|
T Consensus 6 ~~~Ll~s~~----------------------------------~~I~~i~l~~~~~~~~~~~~~~~~~~~l~~d~~~~~l 51 (628)
T 4a0p_A 6 EAFLLFSRR----------------------------------ADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRI 51 (628)
T ss_dssp CCEEEEEET----------------------------------TEEEEEESSCTTCEEECCCCSCSCEEEEEEETTTTEE
T ss_pred CcEEEEEeC----------------------------------CcEEEEECCCCCcceEEEcCCCCceEEEEEECCCCEE
Q ss_pred EEEe--CCeEEEEECCCCceeEEEEec-CCcccCCCCccccccccceeEEcc--ceEEEecCCceecCcceeccccCCCC
Q 003907 206 AVGL--ATQIYCFDALTLENKFSVLTY-PVPQLAGQGAVGINVGYGPMAVGP--RWLAYASNTLLLSNSGRLSPQNLTPS 280 (787)
Q Consensus 206 aV~~--~~~I~iwD~~T~e~l~tl~t~-p~p~~~~~~~~~~~~~~~~lAlsp--r~LAyas~~~~l~~~g~~s~q~lt~~ 280 (787)
.++. .++|+.+++........+... ..| .-+|+.+ +.|-++.
T Consensus 52 ywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P--------------~GlAvD~~~~~LY~tD------------------- 98 (628)
T 4a0p_A 52 YWTDISLKTISRAFMNGSALEHVVEFGLDYP--------------EGMAVDWLGKNLYWAD------------------- 98 (628)
T ss_dssp EEEETTTTEEEEEETTSCSCEEEECSSCSCC--------------CEEEEETTTTEEEEEE-------------------
T ss_pred EEEECCCCeEEEEECCCCCcEEEEeCCCCCc--------------ceEEEEeCCCEEEEEE-------------------
Q ss_pred CcCCCcCCCCCceeEeeehhhhhhhhcccceeecccccccCCCCCCCCcccCCccccccccccccCCCceEEEEECCCCc
Q 003907 281 GVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRA 360 (787)
Q Consensus 281 ~~s~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~ 360 (787)
...+.|.+.|+....
T Consensus 99 -----------------------------------------------------------------~~~~~I~v~~~dG~~ 113 (628)
T 4a0p_A 99 -----------------------------------------------------------------TGTNRIEVSKLDGQH 113 (628)
T ss_dssp -----------------------------------------------------------------TTTTEEEEEETTSTT
T ss_pred -----------------------------------------------------------------CCCCEEEEEecCCCc
Q ss_pred EEEEeccCCCCeEEEEECC-CCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEE
Q 003907 361 IISQFKAHTSPISALCFDP-SGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICF 439 (787)
Q Consensus 361 ~v~~~~aH~~pIsaLaFSp-dG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaF 439 (787)
....+...-..-..|+++| .|.+..|--.+...|...++. | .....+-.+... ...|++
T Consensus 114 ~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~d--------G----------~~~~~l~~~~~~--P~Glal 173 (628)
T 4a0p_A 114 RQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMD--------G----------SERTTLVPNVGR--ANGLTI 173 (628)
T ss_dssp CEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETT--------S----------CSCEEEECSCSS--EEEEEE
T ss_pred EEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCC--------C----------CceEEEECCCCC--cceEEE
Q ss_pred ccC-CCEEEEEeCCCeEEEEeCC
Q 003907 440 SHY-SQWIAIVSSKGTCHVFVLS 461 (787)
Q Consensus 440 SpD-g~~LAs~S~dgTVhIwdl~ 461 (787)
+++ ++...+-+..+.|..++++
T Consensus 174 D~~~~~LY~aD~~~~~I~~~d~d 196 (628)
T 4a0p_A 174 DYAKRRLYWTDLDTNLIESSNML 196 (628)
T ss_dssp ETTTTEEEEEETTTTEEEEEETT
T ss_pred ccccCEEEEEECCCCEEEEEcCC
No 314
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=31.92 E-value=1.6e+02 Score=30.81 Aligned_cols=70 Identities=20% Similarity=0.308 Sum_probs=41.2
Q ss_pred CeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEe---cccccccEEEEEEccC---CC
Q 003907 371 PISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLH---RGITSATIQDICFSHY---SQ 444 (787)
Q Consensus 371 pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~---rG~~~a~I~slaFSpD---g~ 444 (787)
.-..|+|+|+|+++++- ..| .|.+++ . |. ...+..+. .+ ......|+|+|| +.
T Consensus 32 ~P~~ia~~pdG~l~V~e-~~g-~I~~i~--~-------g~--------~~~~~~~~v~~~g--~~~p~gia~~pdf~~~g 90 (352)
T 2ism_A 32 VPWALAFLPDGGMLIAE-RPG-RIRLFR--E-------GR--------LSTYAELSVYHRG--ESGLLGLALHPRFPQEP 90 (352)
T ss_dssp CEEEEEECTTSCEEEEE-TTT-EEEEEE--T-------TE--------EEEEEECCCCCST--TCSEEEEEECTTTTTSC
T ss_pred CceEEEEcCCCeEEEEe-CCC-eEEEEE--C-------CC--------ccEeecceEeecC--CCCceeEEECCCCCCCC
Confidence 34689999999977764 435 477777 2 21 01222221 11 124789999999 55
Q ss_pred EEEEEeC-C-----CeEEEEeCC
Q 003907 445 WIAIVSS-K-----GTCHVFVLS 461 (787)
Q Consensus 445 ~LAs~S~-d-----gTVhIwdl~ 461 (787)
+|.++.. . +.|..|++.
T Consensus 91 ~lYv~~~~~~~~~~~~v~r~~~~ 113 (352)
T 2ism_A 91 YVYAYRTVAEGGLRNQVVRLRHL 113 (352)
T ss_dssp EEEEEEEECTTSSEEEEEEEEEC
T ss_pred EEEEEEecCCCCCccEEEEEEeC
Confidence 5555443 2 456666665
No 315
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=30.33 E-value=5.2e+02 Score=27.42 Aligned_cols=73 Identities=7% Similarity=-0.131 Sum_probs=43.6
Q ss_pred CCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecc-cccccEEEEEEccCCCEEEE
Q 003907 370 SPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRG-ITSATIQDICFSHYSQWIAI 448 (787)
Q Consensus 370 ~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG-~~~a~I~slaFSpDg~~LAs 448 (787)
..-+.|+|++++..|.-+......|..+|+. |. ....+..+ ..-.....|++. .+..+.+
T Consensus 246 ~~P~glavd~~~~~lY~aD~~~~~I~~~d~d--------G~----------~~~~~~~~~~~l~~P~gl~v~-~~~lywt 306 (400)
T 3p5b_L 246 QWPNGITLDLLSGRLYWVDSKLHSISSIDVN--------GG----------NRKTILEDEKRLAHPFSLAVF-EDKVFWT 306 (400)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETT--------SC----------CCEEEEECSSTTSSEEEEEEE-TTEEEEE
T ss_pred CceEEEEEEeCCCEEEEEECCCCEEEEEeCC--------CC----------ccEEEEeCCCCCCCCEEEEEe-CCEEEEe
Confidence 4567899999888888887767778888873 21 11122111 111235567773 3344555
Q ss_pred EeCCCeEEEEeCC
Q 003907 449 VSSKGTCHVFVLS 461 (787)
Q Consensus 449 ~S~dgTVhIwdl~ 461 (787)
-...+.|..++..
T Consensus 307 d~~~~~V~~~~~~ 319 (400)
T 3p5b_L 307 DIINEAIFSANRL 319 (400)
T ss_dssp ESSSCSEEEEESS
T ss_pred cCCCCeEEEEEcC
Confidence 5666777777643
No 316
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=28.45 E-value=7.3e+02 Score=28.55 Aligned_cols=92 Identities=18% Similarity=0.248 Sum_probs=55.7
Q ss_pred ceEEEEECCCCcEEEEeccC-----CCCeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEE
Q 003907 349 GIVVVKDFVTRAIISQFKAH-----TSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLY 423 (787)
Q Consensus 349 G~V~IwDl~s~~~v~~~~aH-----~~pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~ 423 (787)
+-+.++|..+++........ ...|.+|+.+++|++.+.... +. +..||... ..+.
T Consensus 469 ~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~~-~G-l~~~~~~~------------------~~~~ 528 (781)
T 3v9f_A 469 AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIGTFG-GG-VGIYTPDM------------------QLVR 528 (781)
T ss_dssp TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEEESS-SC-EEEECTTC------------------CEEE
T ss_pred CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEEEEcC-CC-EEEEeCCC------------------CeEE
Confidence 44777887776543322212 367999999999998775443 33 66677532 1222
Q ss_pred EEe--cccccccEEEEEEccCCCEEEEEeCCCeEEEEeCC
Q 003907 424 KLH--RGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLS 461 (787)
Q Consensus 424 ~l~--rG~~~a~I~slaFSpDg~~LAs~S~dgTVhIwdl~ 461 (787)
.+. .|.....|.+|...++|+..++ +.+|-+..|+..
T Consensus 529 ~~~~~~~l~~~~i~~i~~d~~g~lWi~-T~~Glv~~~d~~ 567 (781)
T 3v9f_A 529 KFNQYEGFCSNTINQIYRSSKGQMWLA-TGEGLVCFPSAR 567 (781)
T ss_dssp EECTTTTCSCSCEEEEEECTTSCEEEE-ETTEEEEESCTT
T ss_pred EccCCCCCCCCeeEEEEECCCCCEEEE-ECCCceEEECCC
Confidence 232 2333346999999999985444 446654666654
No 317
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=28.30 E-value=5.2e+02 Score=26.76 Aligned_cols=69 Identities=12% Similarity=-0.013 Sum_probs=41.4
Q ss_pred CeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEe
Q 003907 371 PISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVS 450 (787)
Q Consensus 371 pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~LAs~S 450 (787)
.-+.|+|+|++..|.-+....+.|..+|+. |. .... .+..+ ......|++ .++....+-.
T Consensus 204 ~PnGla~d~~~~~lY~aD~~~~~I~~~~~d--------G~--------~~~~-~~~~~--~~~P~giav-~~~~ly~td~ 263 (349)
T 3v64_C 204 WPNGLTIDYAGRRMYWVDAKHHVIERANLD--------GS--------HRKA-VISQG--LPHPFAITV-FEDSLYWTDW 263 (349)
T ss_dssp CEEEEEEETTTTEEEEEETTTTEEEEEETT--------SC--------SCEE-EECSS--CSSEEEEEE-ETTEEEEEET
T ss_pred CcceEEEeCCCCEEEEEECCCCEEEEEeCC--------CC--------ceEE-EEeCC--CCCceEEEE-ECCEEEEecC
Confidence 457899999877777777767778888873 21 0111 11111 123577888 3445555555
Q ss_pred CCCeEEEEe
Q 003907 451 SKGTCHVFV 459 (787)
Q Consensus 451 ~dgTVhIwd 459 (787)
..+.|..++
T Consensus 264 ~~~~V~~~~ 272 (349)
T 3v64_C 264 HTKSINSAN 272 (349)
T ss_dssp TTTEEEEEE
T ss_pred CCCeEEEEE
Confidence 667776665
No 318
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=27.75 E-value=1.2e+02 Score=31.24 Aligned_cols=60 Identities=12% Similarity=0.077 Sum_probs=34.7
Q ss_pred eEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeC
Q 003907 372 ISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSS 451 (787)
Q Consensus 372 IsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~LAs~S~ 451 (787)
+..|.+.+++++++.+. +|...+-.|- | .....+..+. ...+.+++|++++++++++..
T Consensus 124 ~~~i~~~~~~~~~~~~~-~g~v~~S~Dg---------G----------~tW~~~~~~~-~~~~~~~~~~~~~~~~~~g~~ 182 (327)
T 2xbg_A 124 PRLIKALGNGSAEMITN-VGAIYRTKDS---------G----------KNWQALVQEA-IGVMRNLNRSPSGEYVAVSSR 182 (327)
T ss_dssp EEEEEEEETTEEEEEET-TCCEEEESST---------T----------SSEEEEECSC-CCCEEEEEECTTSCEEEEETT
T ss_pred eEEEEEECCCCEEEEeC-CccEEEEcCC---------C----------CCCEEeecCC-CcceEEEEEcCCCcEEEEECC
Confidence 45677777787777654 4653332221 2 1122222232 235889999999998877654
Q ss_pred C
Q 003907 452 K 452 (787)
Q Consensus 452 d 452 (787)
.
T Consensus 183 G 183 (327)
T 2xbg_A 183 G 183 (327)
T ss_dssp S
T ss_pred C
Confidence 3
No 319
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=26.67 E-value=4.9e+02 Score=25.94 Aligned_cols=180 Identities=9% Similarity=0.018 Sum_probs=0.0
Q ss_pred CEEEEEECCCCeEEEEEeCCCcE---EEEEecCCeEEEEeC----------CeEEEEECCCCceeEEEEecCCcccCCCC
Q 003907 173 TAVRFYSFQSHCYEHVLRFRSSV---CMVRCSPRIVAVGLA----------TQIYCFDALTLENKFSVLTYPVPQLAGQG 239 (787)
Q Consensus 173 ~tVrlWdlktg~~v~tL~f~s~V---~sV~~s~~~LaV~~~----------~~I~iwD~~T~e~l~tl~t~p~p~~~~~~ 239 (787)
+.+.+||..+++-...-..+.+- ..+.++.+++++|.. +.+++||+.+.+ -..+..-|.+
T Consensus 39 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~-W~~~~~~p~~------ 111 (308)
T 1zgk_A 39 SYLEAYNPSNGTWLRLADLQVPRSGLAGCVVGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQ-WSPCAPMSVP------ 111 (308)
T ss_dssp CCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCEEEETTEEEECCCEEEEETTTTE-EEECCCCSSC------
T ss_pred ceEEEEcCCCCeEeECCCCCcccccceEEEECCEEEEECCCcCCCCCCeecceEEEECCCCCe-EeECCCCCcC------
Q ss_pred ccccccccceeEEccceEEEecCCceecCcceeccccCCCCCcCCCcCCCCCceeEeeehhhhhhhhcccceeecccccc
Q 003907 240 AVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQE 319 (787)
Q Consensus 240 ~~~~~~~~~~lAlspr~LAyas~~~~l~~~g~~s~q~lt~~~~s~s~sp~~g~lva~~a~d~sk~la~G~~ktls~~~~~ 319 (787)
......+.+..+.+++++..
T Consensus 112 ----r~~~~~~~~~~~iyv~GG~~-------------------------------------------------------- 131 (308)
T 1zgk_A 112 ----RNRIGVGVIDGHIYAVGGSH-------------------------------------------------------- 131 (308)
T ss_dssp ----CBTCEEEEETTEEEEECCEE--------------------------------------------------------
T ss_pred ----ccccEEEEECCEEEEEcCCC--------------------------------------------------------
Q ss_pred cCCCCCCCCcccCCccccccccccccCCCceEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCE----EE
Q 003907 320 LLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNN----IN 395 (787)
Q Consensus 320 l~p~~s~~~~s~s~~~~~~~~~~~s~~~dG~V~IwDl~s~~~v~~~~aH~~pIsaLaFSpdG~lLATaS~dG~~----Ir 395 (787)
.......+.+||..+.+-...-......-...+..-++++++.++.++.. +.
T Consensus 132 ------------------------~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~ 187 (308)
T 1zgk_A 132 ------------------------GCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVLNRLLYAVGGFDGTNRLNSAE 187 (308)
T ss_dssp ------------------------TTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCSSCBCCCEE
T ss_pred ------------------------CCcccccEEEECCCCCeEeECCCCCccccceEEEEECCEEEEEeCCCCCCcCceEE
Q ss_pred EEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCC-----CeEEEEeCCC
Q 003907 396 IFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSK-----GTCHVFVLSP 462 (787)
Q Consensus 396 VWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~LAs~S~d-----gTVhIwdl~~ 462 (787)
+||+.. ..++.........-...+..-+++.++.|+.+ ..+.+||+..
T Consensus 188 ~yd~~~-------------------~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~ 240 (308)
T 1zgk_A 188 CYYPER-------------------NEWRMITAMNTIRSGAGVCVLHNCIYAAGGYDGQDQLNSVERYDVET 240 (308)
T ss_dssp EEETTT-------------------TEEEECCCCSSCCBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTT
T ss_pred EEeCCC-------------------CeEeeCCCCCCccccceEEEECCEEEEEeCCCCCCccceEEEEeCCC
No 320
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=26.50 E-value=3.6e+02 Score=28.70 Aligned_cols=29 Identities=24% Similarity=0.203 Sum_probs=21.5
Q ss_pred CCeEEEEECCCCCEEEEEEcCCCEEEEEeC
Q 003907 370 SPISALCFDPSGTLLVTASVYGNNINIFRI 399 (787)
Q Consensus 370 ~pIsaLaFSpdG~lLATaS~dG~~IrVWdi 399 (787)
..-..|+|.|||++|+|--..|+ |++++.
T Consensus 32 ~~P~~ia~~pdG~llVter~~G~-I~~v~~ 60 (347)
T 3das_A 32 NSPWGLAPLPGGDLLVSSRDEAT-ITRVDA 60 (347)
T ss_dssp SSEEEEEECTTSCEEEEETTTCE-EEEECT
T ss_pred CCceEEEEcCCCcEEEEEecCCE-EEEEEC
Confidence 44578999999999987653464 677664
No 321
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=25.68 E-value=2.5e+02 Score=29.52 Aligned_cols=70 Identities=16% Similarity=0.165 Sum_probs=40.2
Q ss_pred CeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEe---cccccccEEEEEEccC---CC
Q 003907 371 PISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLH---RGITSATIQDICFSHY---SQ 444 (787)
Q Consensus 371 pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~---rG~~~a~I~slaFSpD---g~ 444 (787)
.-..|+|+|+|+++++- .+|+ |+++|- . | . ..+..+. .| ......|+|+|| +.
T Consensus 30 ~P~~ia~~pdG~l~V~e-~~g~-I~~~d~-~-------G--------~-~~~~~~~v~~~g--~~g~~gia~~pdf~~~g 88 (354)
T 3a9g_A 30 VPWSIAPLGGGRYLVTE-RPGR-LVLISP-S-------G--------K-KLVASFDVANVG--EAGLLGLALHPEFPKKS 88 (354)
T ss_dssp CEEEEEEEETTEEEEEE-TTTE-EEEECS-S-------C--------E-EEEEECCCCCST--TCSEEEEEECTTTTTSC
T ss_pred CCeEEEEcCCCeEEEEe-CCCE-EEEEeC-C-------C--------c-eEeeccceeecC--CCceeeEEeCCCCCcCC
Confidence 45789999999977764 4354 777762 1 3 0 1222211 11 124789999998 55
Q ss_pred EEEEEeC----C----CeEEEEeCC
Q 003907 445 WIAIVSS----K----GTCHVFVLS 461 (787)
Q Consensus 445 ~LAs~S~----d----gTVhIwdl~ 461 (787)
+|.++.. + ..|..|++.
T Consensus 89 ~lyv~~~~~~~~~~~~~~v~r~~~~ 113 (354)
T 3a9g_A 89 WVYLYASYFAEGGHIRNRVIRGRLD 113 (354)
T ss_dssp EEEEEEEEECGGGCEEEEEEEEEEC
T ss_pred EEEEEEeccCCCCCcceEEEEEEEC
Confidence 5555433 2 455566654
No 322
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=25.15 E-value=6.7e+02 Score=27.02 Aligned_cols=109 Identities=10% Similarity=0.150 Sum_probs=59.4
Q ss_pred CceEEEEECCCC--cEEEEecc------CCCCeEEEEEC---CC----CCEEEEEEcCCCEEEEEeCCCCcccCCCCCCc
Q 003907 348 AGIVVVKDFVTR--AIISQFKA------HTSPISALCFD---PS----GTLLVTASVYGNNINIFRIMPSCMRSGSGNHK 412 (787)
Q Consensus 348 dG~V~IwDl~s~--~~v~~~~a------H~~pIsaLaFS---pd----G~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~ 412 (787)
.-.+.+||+.+. ++++.+.- ..+-++.|+++ |+ +.+.--+...+.-|-|+|+.......-. +.+
T Consensus 122 ~pkLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~-~~~ 200 (381)
T 3q6k_A 122 RPAIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVT-HPT 200 (381)
T ss_dssp CCEEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEE-CGG
T ss_pred CceEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEc-cCC
Confidence 347889999999 88877642 13468889998 32 4455555544566899998652110000 000
Q ss_pred cccCCcceEEEEEecccc---cccEEEEEEccC----CCEEEEEeCCCeEEEEeCC
Q 003907 413 YDWNSSHVHLYKLHRGIT---SATIQDICFSHY----SQWIAIVSSKGTCHVFVLS 461 (787)
Q Consensus 413 ~~~~~s~~~l~~l~rG~~---~a~I~slaFSpD----g~~LAs~S~dgTVhIwdl~ 461 (787)
+-.+. .-.+.. .|.. ...|..|++||| +++|.-....++ ++|.+.
T Consensus 201 ~~pd~--~~~~~i-~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss~-~ly~V~ 252 (381)
T 3q6k_A 201 FKAER--PTKFDY-GGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSAI-KVYSVN 252 (381)
T ss_dssp GSCCS--CEEEEE-TTEEEEECCCEEEEEECCCCTTSCCEEEEEESSCS-EEEEEE
T ss_pred Ccccc--CcceEE-CCEEeEeccCceEEEecCCcCCCCeEEEEEECCCC-cEEEEE
Confidence 00000 001111 0100 123788999998 777766665543 566654
No 323
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=24.95 E-value=1.2e+02 Score=30.99 Aligned_cols=78 Identities=14% Similarity=0.123 Sum_probs=0.0
Q ss_pred CeEEEEECCCCCEEEEEEcCCCEEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEe
Q 003907 371 PISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVS 450 (787)
Q Consensus 371 pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~~~~~~~~g~~~~~~~~s~~~l~~l~rG~~~a~I~slaFSpDg~~LAs~S 450 (787)
.+..|+|+|+|.+.|. +. |. ||...+. ......|-.+..++-..-...-.+ +.|.|+|.+.++
T Consensus 42 ~~~~laf~P~G~LYaV-~~-G~---Ly~~~~~------t~~~~~W~~s~t~IG~~Gw~~F~a----~~fD~~G~LYav-- 104 (236)
T 1tl2_A 42 NFKFLFLSPGGELYGV-LN-DK---IYKGTPP------THDNDNWMGRAKKIGNGGWNQFQF----LFFDPNGYLYAV-- 104 (236)
T ss_dssp TCSEEEECTTSCEEEE-ET-TE---EEEESCC------CSTTCCHHHHCEEEECSCGGGCSE----EEECTTSCEEEE--
T ss_pred cceeEEECCCccEEEE-eC-Ce---EEEECCC------CCCcccccccccEecccccccceE----EEECCCCCEEEe--
Q ss_pred CCCeEEEEeCCCCCC
Q 003907 451 SKGTCHVFVLSPFGG 465 (787)
Q Consensus 451 ~dgTVhIwdl~~~gg 465 (787)
.||.|.-++-.+.+.
T Consensus 105 ~dG~iyr~~pP~~~~ 119 (236)
T 1tl2_A 105 SKDKLYKASPPQSDT 119 (236)
T ss_dssp ETTEEEEESCCCSTT
T ss_pred CCCEEEEeCCCcCCC
No 324
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=23.93 E-value=5.3e+02 Score=25.45 Aligned_cols=50 Identities=16% Similarity=0.218 Sum_probs=29.5
Q ss_pred CEEEEEECCCCeEEEEEeCCC---cEEEEEecCCeEEEEeC-------CeEEEEECCCCc
Q 003907 173 TAVRFYSFQSHCYEHVLRFRS---SVCMVRCSPRIVAVGLA-------TQIYCFDALTLE 222 (787)
Q Consensus 173 ~tVrlWdlktg~~v~tL~f~s---~V~sV~~s~~~LaV~~~-------~~I~iwD~~T~e 222 (787)
+.+.+||..+++-...-..+. .-..+.++.+++++|.. +.+++||..+.+
T Consensus 70 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~ 129 (306)
T 3ii7_A 70 KRMDCYNVVKDSWYSKLGPPTPRDSLAACAAEGKIYTSGGSEVGNSALYLFECYDTRTES 129 (306)
T ss_dssp CEEEEEETTTTEEEEEECCSSCCBSCEEEEETTEEEEECCBBTTBSCCCCEEEEETTTTE
T ss_pred ceEEEEeCCCCeEEECCCCCccccceeEEEECCEEEEECCCCCCCcEeeeEEEEeCCCCc
Confidence 579999999886443333332 22334455566666432 247888877664
No 325
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=21.39 E-value=5.9e+02 Score=25.00 Aligned_cols=50 Identities=20% Similarity=0.266 Sum_probs=28.0
Q ss_pred CEEEEEECCCCeEEEEEeCCC---cEEEEEecCCeEEEEeC------CeEEEEECCCCc
Q 003907 173 TAVRFYSFQSHCYEHVLRFRS---SVCMVRCSPRIVAVGLA------TQIYCFDALTLE 222 (787)
Q Consensus 173 ~tVrlWdlktg~~v~tL~f~s---~V~sV~~s~~~LaV~~~------~~I~iwD~~T~e 222 (787)
+.+..||..+++-...-..+. .-..+..+.+++++|.. +.+++||..+.+
T Consensus 31 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~ 89 (301)
T 2vpj_A 31 DVVEKYDPKTQEWSFLPSITRKRRYVASVSLHDRIYVIGGYDGRSRLSSVECLDYTADE 89 (301)
T ss_dssp CCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCSSCBCCCEEEEETTCCT
T ss_pred eEEEEEcCCCCeEEeCCCCChhhccccEEEECCEEEEEcCCCCCccCceEEEEECCCCC
Confidence 468899998876332212222 12333445566665432 247888877664
No 326
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=20.59 E-value=3.3e+02 Score=33.07 Aligned_cols=32 Identities=22% Similarity=0.139 Sum_probs=28.7
Q ss_pred cEEEEEEccCCCEEEEEeCCCeEEEEeCCCCC
Q 003907 433 TIQDICFSHYSQWIAIVSSKGTCHVFVLSPFG 464 (787)
Q Consensus 433 ~I~slaFSpDg~~LAs~S~dgTVhIwdl~~~g 464 (787)
.|.+++..+|..+|.+-+.|++++||++.+..
T Consensus 237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~ 268 (950)
T 4gq2_M 237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQ 268 (950)
T ss_dssp CEEEEEEETTTTEEEEEETTCEEEEEETTTTE
T ss_pred eEEEEeecCCCcEEEEEECCCEEEEEECCCCC
Confidence 57889999999999999999999999998753
No 327
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=20.29 E-value=4.8e+02 Score=31.60 Aligned_cols=30 Identities=17% Similarity=0.305 Sum_probs=24.8
Q ss_pred CeEEEEECCCCCEEEEEEcCCCEEEEEeCCC
Q 003907 371 PISALCFDPSGTLLVTASVYGNNINIFRIMP 401 (787)
Q Consensus 371 pIsaLaFSpdG~lLATaS~dG~~IrVWdi~~ 401 (787)
.|.+++..++..+|.|-+. ++.+|||++..
T Consensus 237 ~~~~~~~~~~~~~lftl~~-D~~LRiWsl~t 266 (950)
T 4gq2_M 237 TIISMIFLSTYNVLVMLSL-DYKLKVLDLST 266 (950)
T ss_dssp CEEEEEEETTTTEEEEEET-TCEEEEEETTT
T ss_pred eEEEEeecCCCcEEEEEEC-CCEEEEEECCC
Confidence 4667777888899999999 56699999865
Done!