Query 003908
Match_columns 787
No_of_seqs 69 out of 71
Neff 3.1
Searched_HMMs 29240
Date Mon Mar 25 07:58:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003908.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003908hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2crg_A Metastasis associated p 98.7 5.7E-09 2E-13 88.0 4.2 56 48-104 5-61 (70)
2 2yqk_A Arginine-glutamic acid 98.6 2.3E-08 8E-13 82.5 5.3 52 47-99 5-57 (63)
3 2eqr_A N-COR1, N-COR, nuclear 98.6 3.9E-08 1.3E-12 80.4 6.3 51 45-95 6-56 (61)
4 2iw5_B Protein corest, REST co 98.4 2.1E-07 7.2E-12 94.4 5.3 54 45-98 127-180 (235)
5 4a69_C Nuclear receptor corepr 98.1 2.2E-06 7.6E-11 76.0 5.0 47 49-95 41-87 (94)
6 2xag_B REST corepressor 1; ami 98.0 2.8E-06 9.5E-11 93.7 5.3 52 46-97 375-426 (482)
7 2cu7_A KIAA1915 protein; nucle 98.0 1.1E-05 3.8E-10 67.4 6.8 53 50-102 8-60 (72)
8 2yus_A SWI/SNF-related matrix- 97.7 3.6E-05 1.2E-09 66.3 5.3 51 45-95 12-62 (79)
9 2yum_A ZZZ3 protein, zinc fing 97.7 3.6E-05 1.2E-09 64.5 5.2 54 47-100 4-63 (75)
10 2ltp_A Nuclear receptor corepr 96.6 1.7E-05 5.7E-10 69.3 0.0 50 50-99 15-64 (89)
11 1x41_A Transcriptional adaptor 97.4 0.00026 9E-09 57.3 6.0 46 51-96 8-54 (60)
12 2k9n_A MYB24; R2R3 domain, DNA 97.3 0.00053 1.8E-08 60.8 7.2 54 51-104 53-106 (107)
13 2cqr_A RSGI RUH-043, DNAJ homo 97.3 0.00012 4.1E-09 62.6 2.9 57 43-99 10-70 (73)
14 2elk_A SPCC24B10.08C protein; 97.2 0.00044 1.5E-08 55.8 5.4 45 52-96 10-56 (58)
15 2xag_B REST corepressor 1; ami 97.2 5.8E-05 2E-09 83.4 0.0 52 50-102 188-239 (482)
16 1guu_A C-MYB, MYB proto-oncoge 97.0 0.00078 2.7E-08 52.6 5.3 45 52-96 4-49 (52)
17 2d9a_A B-MYB, MYB-related prot 97.0 0.001 3.6E-08 53.4 5.6 45 50-94 7-52 (60)
18 2dim_A Cell division cycle 5-l 96.9 0.0021 7.3E-08 53.1 7.2 56 52-114 10-66 (70)
19 3osg_A MYB21; transcription-DN 96.8 0.0042 1.5E-07 56.5 8.9 80 50-140 10-89 (126)
20 1gv2_A C-MYB, MYB proto-oncoge 96.8 0.00084 2.9E-08 58.9 4.1 49 50-98 55-103 (105)
21 2din_A Cell division cycle 5-l 96.8 0.0032 1.1E-07 51.5 7.2 50 51-101 9-58 (66)
22 2k9n_A MYB24; R2R3 domain, DNA 96.8 0.0077 2.6E-07 53.3 10.1 76 52-138 2-78 (107)
23 1ity_A TRF1; helix-turn-helix, 96.8 0.0026 9.1E-08 52.5 6.4 54 44-97 3-59 (69)
24 2cjj_A Radialis; plant develop 96.7 0.0021 7.1E-08 57.2 6.1 50 52-101 9-62 (93)
25 3osg_A MYB21; transcription-DN 96.7 0.0016 5.4E-08 59.3 5.4 50 51-100 62-111 (126)
26 1gvd_A MYB proto-oncogene prot 96.7 0.0016 5.4E-08 51.0 4.5 44 52-95 4-48 (52)
27 1gv2_A C-MYB, MYB proto-oncoge 96.5 0.0073 2.5E-07 52.9 8.0 77 52-139 5-82 (105)
28 1wgx_A KIAA1903 protein; MYB D 96.5 0.0029 9.9E-08 54.5 5.3 44 52-95 9-56 (73)
29 1h8a_C AMV V-MYB, MYB transfor 96.5 0.011 3.7E-07 53.7 9.2 78 51-139 27-105 (128)
30 1h8a_C AMV V-MYB, MYB transfor 96.3 0.0017 5.7E-08 59.1 2.6 49 50-98 78-126 (128)
31 2cqq_A RSGI RUH-037, DNAJ homo 95.9 0.0083 2.8E-07 51.1 4.9 45 52-97 9-57 (72)
32 2llk_A Cyclin-D-binding MYB-li 95.9 0.013 4.5E-07 50.1 6.0 43 52-95 24-66 (73)
33 1w0t_A Telomeric repeat bindin 95.6 0.016 5.6E-07 45.5 5.3 46 52-97 3-51 (53)
34 1h89_C C-MYB, MYB proto-oncoge 95.6 0.041 1.4E-06 51.5 8.9 78 50-138 57-135 (159)
35 1h89_C C-MYB, MYB proto-oncoge 95.6 0.0046 1.6E-07 58.0 2.5 49 50-98 109-157 (159)
36 3zqc_A MYB3; transcription-DNA 95.4 0.0075 2.6E-07 55.2 3.2 48 52-99 55-102 (131)
37 3sjm_A Telomeric repeat-bindin 95.1 0.036 1.2E-06 45.9 5.9 46 52-97 12-60 (64)
38 3zqc_A MYB3; transcription-DNA 95.0 0.031 1.1E-06 51.1 5.7 78 52-140 3-81 (131)
39 2juh_A Telomere binding protei 94.3 0.27 9.1E-06 45.9 10.2 63 43-107 9-76 (121)
40 4eef_G F-HB80.4, designed hema 94.2 0.0041 1.4E-07 53.9 -1.9 42 52-93 21-66 (74)
41 2roh_A RTBP1, telomere binding 94.0 0.45 1.5E-05 44.4 11.2 72 43-116 23-99 (122)
42 2ckx_A NGTRF1, telomere bindin 93.5 0.22 7.6E-06 43.4 7.6 73 53-126 2-81 (83)
43 2aje_A Telomere repeat-binding 93.2 0.16 5.4E-06 46.3 6.4 56 43-98 5-65 (105)
44 1ofc_X ISWI protein; nuclear p 91.4 0.14 4.9E-06 54.0 4.5 52 51-102 110-162 (304)
45 3hm5_A DNA methyltransferase 1 89.7 0.6 2.1E-05 41.9 6.3 52 52-103 31-87 (93)
46 4b4c_A Chromodomain-helicase-D 89.6 0.43 1.5E-05 46.1 5.7 58 48-105 4-66 (211)
47 1x58_A Hypothetical protein 49 88.1 0.3 1E-05 41.1 3.0 51 49-99 6-59 (62)
48 4iej_A DNA methyltransferase 1 87.0 1.2 4.1E-05 40.1 6.4 54 52-105 31-89 (93)
49 1ug2_A 2610100B20RIK gene prod 86.5 3.6 0.00012 37.3 9.1 60 44-103 26-88 (95)
50 2y9y_A Imitation switch protei 80.8 0.79 2.7E-05 49.7 3.0 51 51-101 123-175 (374)
51 1ign_A Protein (RAP1); RAP1,ye 76.1 1.2 4E-05 46.1 2.4 48 51-98 8-61 (246)
52 1irz_A ARR10-B; helix-turn-hel 63.3 11 0.00038 31.8 5.3 42 49-90 5-51 (64)
53 2o8x_A Probable RNA polymerase 32.1 86 0.0029 24.0 5.5 53 51-105 13-65 (70)
54 2xb0_X Chromo domain-containin 31.7 60 0.0021 33.7 5.8 53 52-104 4-61 (270)
55 3mzy_A RNA polymerase sigma-H 27.3 1E+02 0.0034 26.6 5.7 49 54-105 110-158 (164)
56 2ebi_A DNA binding protein GT- 26.0 1.4E+02 0.0046 25.2 6.1 40 51-90 4-57 (86)
57 2hzd_A Transcriptional enhance 22.1 35 0.0012 30.2 1.7 47 315-368 27-78 (82)
58 2lr8_A CAsp8-associated protei 27.3 19 0.00066 31.1 0.0 47 51-98 14-63 (70)
59 3fap_B FRAP, FKBP12-rapamycin 21.5 1.1E+02 0.0039 27.2 4.9 30 71-100 62-94 (94)
60 2npu_A FKBP12-rapamycin comple 20.8 1.2E+02 0.0041 28.4 5.1 28 74-101 95-125 (126)
61 3ezq_B Protein FADD; apoptosis 20.4 79 0.0027 29.0 3.8 49 111-159 42-92 (122)
No 1
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=98.73 E-value=5.7e-09 Score=87.98 Aligned_cols=56 Identities=23% Similarity=0.463 Sum_probs=50.6
Q ss_pred ccccccCCHHHHHHHHHHHHHhcccHHHHHH-HhhhcchhHHHHHHHHHHHHHHhhcC
Q 003908 48 TRQWAAWTREEEESFFTALRQVGKNFEKITH-RVRSKNKDQVRHYYYRLVRRMNKLLG 104 (787)
Q Consensus 48 ~R~w~~Ws~eEkn~FFEaL~e~GKdFEaI~~-~i~~KnKdQVRhFYYrt~~rI~k~L~ 104 (787)
+.....||.+|..+|-+||..|||||-.|+. +|.+|+..||.+||| .|+|...|..
T Consensus 5 r~~~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY-~wKkt~~y~q 61 (70)
T 2crg_A 5 SSGMEEWSASEACLFEEALEKYGKDFNDIRQDFLPWKSLTSIIEYYY-MWKTTDRYVQ 61 (70)
T ss_dssp CCSSCCCCHHHHHHHHHHHHHTCSCHHHHHHTTCSSSCHHHHHHHHH-HHHTCCSSCS
T ss_pred ccCCCCCCHHHHHHHHHHHHHhCccHHHHHHHHcCCCCHHHHHHHHH-hhcCCchHHH
Confidence 4567899999999999999999999999999 799999999999999 7998776643
No 2
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.65 E-value=2.3e-08 Score=82.53 Aligned_cols=52 Identities=29% Similarity=0.556 Sum_probs=46.0
Q ss_pred CccccccCCHHHHHHHHHHHHHhcccHHHHHH-HhhhcchhHHHHHHHHHHHHH
Q 003908 47 PTRQWAAWTREEEESFFTALRQVGKNFEKITH-RVRSKNKDQVRHYYYRLVRRM 99 (787)
Q Consensus 47 ~~R~w~~Ws~eEkn~FFEaL~e~GKdFEaI~~-~i~~KnKdQVRhFYYrt~~rI 99 (787)
|+.....||.+|...|-+||..|||||-.|+. +|.+|+..||..||| .|++-
T Consensus 5 p~~~~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY-~wKkt 57 (63)
T 2yqk_A 5 SSGIEKCWTEDEVKRFVKGLRQYGKNFFRIRKELLPNKETGELITFYY-YWKKT 57 (63)
T ss_dssp CCCCCCSCCHHHHHHHHHHHHHTCSCHHHHHHHSCTTSCHHHHHHHHH-HHHCS
T ss_pred CCcCCCCcCHHHHHHHHHHHHHhCccHHHHHHHHcCCCcHHHHHHHHh-cccCC
Confidence 44445899999999999999999999999998 699999999999999 46643
No 3
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.64 E-value=3.9e-08 Score=80.38 Aligned_cols=51 Identities=27% Similarity=0.365 Sum_probs=46.7
Q ss_pred CCCccccccCCHHHHHHHHHHHHHhcccHHHHHHHhhhcchhHHHHHHHHH
Q 003908 45 KRPTRQWAAWTREEEESFFTALRQVGKNFEKITHRVRSKNKDQVRHYYYRL 95 (787)
Q Consensus 45 kk~~R~w~~Ws~eEkn~FFEaL~e~GKdFEaI~~~i~~KnKdQVRhFYYrt 95 (787)
.+.+.....||.+|...|-++|..|||+|..|+.+|..|+..||+.|||..
T Consensus 6 ~~~r~~~~~WT~eE~~~F~~~~~~~gk~w~~Ia~~l~~rt~~~~v~~Yy~~ 56 (61)
T 2eqr_A 6 SGDRQFMNVWTDHEKEIFKDKFIQHPKNFGLIASYLERKSVPDCVLYYYLT 56 (61)
T ss_dssp CCCCSCCCSCCHHHHHHHHHHHHHSTTCHHHHHHHCTTSCHHHHHHHHHHH
T ss_pred ccccccCCCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHh
Confidence 345566699999999999999999999999999999999999999999975
No 4
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=98.39 E-value=2.1e-07 Score=94.42 Aligned_cols=54 Identities=28% Similarity=0.474 Sum_probs=48.9
Q ss_pred CCCccccccCCHHHHHHHHHHHHHhcccHHHHHHHhhhcchhHHHHHHHHHHHH
Q 003908 45 KRPTRQWAAWTREEEESFFTALRQVGKNFEKITHRVRSKNKDQVRHYYYRLVRR 98 (787)
Q Consensus 45 kk~~R~w~~Ws~eEkn~FFEaL~e~GKdFEaI~~~i~~KnKdQVRhFYYrt~~r 98 (787)
...++....||.+|...|.+||+.|||||.+|+.+|.+|+..|||.|||..-+|
T Consensus 127 e~~~k~s~~WTeEE~~lFleAl~kYGKDW~~IAk~VgTKT~~QcKnfY~~~kKR 180 (235)
T 2iw5_B 127 EVIQKCNARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRR 180 (235)
T ss_dssp CCCCCCCSSCCHHHHHHHHHHHHHHSSCHHHHHHHHSSCCHHHHHHHHHHTTTT
T ss_pred CCCCccCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 345567789999999999999999999999999999999999999999976655
No 5
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=98.11 E-value=2.2e-06 Score=75.97 Aligned_cols=47 Identities=28% Similarity=0.441 Sum_probs=44.1
Q ss_pred cccccCCHHHHHHHHHHHHHhcccHHHHHHHhhhcchhHHHHHHHHH
Q 003908 49 RQWAAWTREEEESFFTALRQVGKNFEKITHRVRSKNKDQVRHYYYRL 95 (787)
Q Consensus 49 R~w~~Ws~eEkn~FFEaL~e~GKdFEaI~~~i~~KnKdQVRhFYYrt 95 (787)
.....||.+|+..|-++|..|||||-+|+.+|..|+..|+-.|||..
T Consensus 41 ~~~~~WT~eE~~~F~~~~~~~gK~F~~Ia~~l~~Kt~~~cV~~YY~~ 87 (94)
T 4a69_C 41 QVMNMWSEQEKETFREKFMQHPKNFGLIASFLERKTVAECVLYYYLT 87 (94)
T ss_dssp HHTCCCCHHHHHHHHHHHHHSTTCHHHHHHTCTTCCHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHcCCCCHHHHHHHHhcc
Confidence 45689999999999999999999999999999999999999999953
No 6
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=98.04 E-value=2.8e-06 Score=93.72 Aligned_cols=52 Identities=27% Similarity=0.455 Sum_probs=46.8
Q ss_pred CCccccccCCHHHHHHHHHHHHHhcccHHHHHHHhhhcchhHHHHHHHHHHH
Q 003908 46 RPTRQWAAWTREEEESFFTALRQVGKNFEKITHRVRSKNKDQVRHYYYRLVR 97 (787)
Q Consensus 46 k~~R~w~~Ws~eEkn~FFEaL~e~GKdFEaI~~~i~~KnKdQVRhFYYrt~~ 97 (787)
+.++....||.+|...|-++|++|||||.+|+..|-+|+..|||.|||+.-+
T Consensus 375 ~~~~~~~~WT~eE~~~f~~al~~yGkdw~~IA~~VgTKT~~Qvk~fy~~~kk 426 (482)
T 2xag_B 375 VIQKCNARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRR 426 (482)
T ss_dssp CCCCCCSCCCHHHHHHHHHHHHHHTTCHHHHHHHHSSCCHHHHHHHHHHTTT
T ss_pred cccccCCCCCHHHHHHHHHHHHHHCcCHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 4456678999999999999999999999999999999999999999985333
No 7
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=97.99 E-value=1.1e-05 Score=67.44 Aligned_cols=53 Identities=28% Similarity=0.407 Sum_probs=49.0
Q ss_pred ccccCCHHHHHHHHHHHHHhcccHHHHHHHhhhcchhHHHHHHHHHHHHHHhh
Q 003908 50 QWAAWTREEEESFFTALRQVGKNFEKITHRVRSKNKDQVRHYYYRLVRRMNKL 102 (787)
Q Consensus 50 ~w~~Ws~eEkn~FFEaL~e~GKdFEaI~~~i~~KnKdQVRhFYYrt~~rI~k~ 102 (787)
....||.+|...|.+++.+||.++..|+.+|..|+..|||.+|+..+++..+.
T Consensus 8 ~~~~WT~eEd~~l~~~~~~~G~~W~~Ia~~~~~Rt~~q~k~r~~~~l~~~~~~ 60 (72)
T 2cu7_A 8 YSVKWTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQYFKNKVKC 60 (72)
T ss_dssp CCCCCCHHHHHHHHHHHHHTCSCHHHHHHHHSSSCHHHHHHHHHHHHHHHSCS
T ss_pred CCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHHHHhc
Confidence 34789999999999999999999999999999999999999999998887654
No 8
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=97.70 E-value=3.6e-05 Score=66.34 Aligned_cols=51 Identities=22% Similarity=0.398 Sum_probs=45.6
Q ss_pred CCCccccccCCHHHHHHHHHHHHHhcccHHHHHHHhhhcchhHHHHHHHHH
Q 003908 45 KRPTRQWAAWTREEEESFFTALRQVGKNFEKITHRVRSKNKDQVRHYYYRL 95 (787)
Q Consensus 45 kk~~R~w~~Ws~eEkn~FFEaL~e~GKdFEaI~~~i~~KnKdQVRhFYYrt 95 (787)
++.......||.+|...|.+++..||.+..+|+.+|.+|+..|||..|.+.
T Consensus 12 ~~~~~~~~~WT~eEd~~Ll~~v~~~G~~W~~IA~~v~~RT~~qcr~r~~~~ 62 (79)
T 2yus_A 12 SKGASAGREWTEQETLLLLEALEMYKDDWNKVSEHVGSRTQDECILHFLRL 62 (79)
T ss_dssp CCSSCCSCCCCHHHHHHHHHHHHHSSSCHHHHHHHHSSCCHHHHHHHHTTS
T ss_pred ccccccCCCcCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHh
Confidence 344455689999999999999999999999999999999999999999754
No 9
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.70 E-value=3.6e-05 Score=64.47 Aligned_cols=54 Identities=17% Similarity=0.279 Sum_probs=47.4
Q ss_pred CccccccCCHHHHHHHHHHHHHhc------ccHHHHHHHhhhcchhHHHHHHHHHHHHHH
Q 003908 47 PTRQWAAWTREEEESFFTALRQVG------KNFEKITHRVRSKNKDQVRHYYYRLVRRMN 100 (787)
Q Consensus 47 ~~R~w~~Ws~eEkn~FFEaL~e~G------KdFEaI~~~i~~KnKdQVRhFYYrt~~rI~ 100 (787)
|......||.+|...|.+++.+|| .+..+|+.+|..|+..|||..|.+.+.++.
T Consensus 4 p~~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~~Rt~~qcr~r~~~~l~~~~ 63 (75)
T 2yum_A 4 GSSGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELGNRTAKQVASQVQKYFIKLT 63 (75)
T ss_dssp CCCCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHSSSCHHHHHHHHHHHHGGGS
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence 444457899999999999999999 899999999999999999999987766543
No 10
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=96.60 E-value=1.7e-05 Score=69.29 Aligned_cols=50 Identities=28% Similarity=0.523 Sum_probs=46.5
Q ss_pred ccccCCHHHHHHHHHHHHHhcccHHHHHHHhhhcchhHHHHHHHHHHHHH
Q 003908 50 QWAAWTREEEESFFTALRQVGKNFEKITHRVRSKNKDQVRHYYYRLVRRM 99 (787)
Q Consensus 50 ~w~~Ws~eEkn~FFEaL~e~GKdFEaI~~~i~~KnKdQVRhFYYrt~~rI 99 (787)
....||.+|...|++++.+||.++..|+.+|..|+..|||.+||+..+++
T Consensus 15 ~~~~WT~eEd~~l~~~~~~~G~~W~~IA~~l~gRt~~q~k~r~~~~lrk~ 64 (89)
T 2ltp_A 15 YFQGWTEEEMGTAKKGLLEHGRNWSAIARMVGSKTVSQCKNFYFNYKKRQ 64 (89)
Confidence 34689999999999999999999999999999999999999999888764
No 11
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=97.38 E-value=0.00026 Score=57.33 Aligned_cols=46 Identities=22% Similarity=0.512 Sum_probs=42.7
Q ss_pred cccCCHHHHHHHHHHHHHhc-ccHHHHHHHhhhcchhHHHHHHHHHH
Q 003908 51 WAAWTREEEESFFTALRQVG-KNFEKITHRVRSKNKDQVRHYYYRLV 96 (787)
Q Consensus 51 w~~Ws~eEkn~FFEaL~e~G-KdFEaI~~~i~~KnKdQVRhFYYrt~ 96 (787)
...||.+|...+.+++.+|| ++..+|+.+|..|+..|+|..|++.+
T Consensus 8 ~~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~r~~~~l 54 (60)
T 1x41_A 8 DPSWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMKYF 54 (60)
T ss_dssp CSSSCHHHHHHHHHHHHHTCTTCHHHHHHHHTTSCHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHHCcCcHHHHHHHhCCCCHHHHHHHHHHHc
Confidence 46899999999999999999 79999999999999999999998654
No 12
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=97.27 E-value=0.00053 Score=60.78 Aligned_cols=54 Identities=17% Similarity=0.361 Sum_probs=50.4
Q ss_pred cccCCHHHHHHHHHHHHHhcccHHHHHHHhhhcchhHHHHHHHHHHHHHHhhcC
Q 003908 51 WAAWTREEEESFFTALRQVGKNFEKITHRVRSKNKDQVRHYYYRLVRRMNKLLG 104 (787)
Q Consensus 51 w~~Ws~eEkn~FFEaL~e~GKdFEaI~~~i~~KnKdQVRhFYYrt~~rI~k~L~ 104 (787)
...||.+|...+.+++.+||.+...|+.+|..++..|||+.|+.+.+++.+..+
T Consensus 53 ~~~WT~eEd~~L~~~~~~~G~~W~~Ia~~l~gRt~~~~k~rw~~l~r~~~~~~~ 106 (107)
T 2k9n_A 53 TDPWSPEEDMLLDQKYAEYGPKWNKISKFLKNRSDNNIRNRWMMIARHRAKHQK 106 (107)
T ss_dssp TCCCCHHHHHHHHHHHHHTCSCHHHHHHHHSSSCHHHHHHHHHHHHHHHHSSTT
T ss_pred ccccCHHHHHHHHHHHHHhCcCHHHHHHHCCCCCHHHHHHHHHHHHhhHHHhhc
Confidence 478999999999999999999999999999999999999999999999887643
No 13
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=97.27 E-value=0.00012 Score=62.56 Aligned_cols=57 Identities=26% Similarity=0.331 Sum_probs=49.1
Q ss_pred ccCCCccccccCCHHHHHHHHHHHHHhc----ccHHHHHHHhhhcchhHHHHHHHHHHHHH
Q 003908 43 SAKRPTRQWAAWTREEEESFFTALRQVG----KNFEKITHRVRSKNKDQVRHYYYRLVRRM 99 (787)
Q Consensus 43 ~~kk~~R~w~~Ws~eEkn~FFEaL~e~G----KdFEaI~~~i~~KnKdQVRhFYYrt~~rI 99 (787)
+.+++.-....||.+|...|-+||..|| .+.++|+.+|..|+..|||+.|..+++.+
T Consensus 10 ~~~~~~~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vpGRT~~qcr~Ry~~L~~d~ 70 (73)
T 2cqr_A 10 RKERARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKLLVSGP 70 (73)
T ss_dssp CCCTTTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHHHHHHHHSSC
T ss_pred cccccccCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHcc
Confidence 3455555667899999999999999999 68999999999999999999999876543
No 14
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=97.20 E-value=0.00044 Score=55.84 Aligned_cols=45 Identities=24% Similarity=0.484 Sum_probs=41.9
Q ss_pred ccCCHHHHHHHHHHHHHhc-ccHHHHHHHhh-hcchhHHHHHHHHHH
Q 003908 52 AAWTREEEESFFTALRQVG-KNFEKITHRVR-SKNKDQVRHYYYRLV 96 (787)
Q Consensus 52 ~~Ws~eEkn~FFEaL~e~G-KdFEaI~~~i~-~KnKdQVRhFYYrt~ 96 (787)
..||.+|...+.+++.+|| .+..+|+.+|. .|+..|+|..|.+.+
T Consensus 10 ~~WT~eED~~L~~~v~~~G~~~W~~IA~~~~~~Rt~~qcr~r~~~~~ 56 (58)
T 2elk_A 10 ENWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKTY 56 (58)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCHHHHHHHHCSSCCHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHHCcCCHHHHHHHHCCCCCHHHHHHHHHHHc
Confidence 4699999999999999999 99999999999 999999999988753
No 15
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=97.17 E-value=5.8e-05 Score=83.40 Aligned_cols=52 Identities=23% Similarity=0.396 Sum_probs=0.0
Q ss_pred ccccCCHHHHHHHHHHHHHhcccHHHHHHHhhhcchhHHHHHHHHHHHHHHhh
Q 003908 50 QWAAWTREEEESFFTALRQVGKNFEKITHRVRSKNKDQVRHYYYRLVRRMNKL 102 (787)
Q Consensus 50 ~w~~Ws~eEkn~FFEaL~e~GKdFEaI~~~i~~KnKdQVRhFYYrt~~rI~k~ 102 (787)
....||.+|+.+|-++|..|||||-.|+.+|..|+..+|-.|||. |++-..|
T Consensus 188 ~~d~WT~eE~~lFe~al~~yGKdF~~I~~~lp~Ksv~e~V~yYY~-WKKt~~y 239 (482)
T 2xag_B 188 FPDEWTVEDKVLFEQAFSFHGKTFHRIQQMLPDKSIASLVKFYYS-WKKTRTK 239 (482)
T ss_dssp -----------------------------------------------------
T ss_pred cccccCHHHHHHHHHHHHHcCccHHHHHHHcCCCCHHHHHHHhcc-ccccccH
Confidence 346899999999999999999999999999999999999999998 7766554
No 16
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=97.04 E-value=0.00078 Score=52.60 Aligned_cols=45 Identities=24% Similarity=0.527 Sum_probs=42.4
Q ss_pred ccCCHHHHHHHHHHHHHhcc-cHHHHHHHhhhcchhHHHHHHHHHH
Q 003908 52 AAWTREEEESFFTALRQVGK-NFEKITHRVRSKNKDQVRHYYYRLV 96 (787)
Q Consensus 52 ~~Ws~eEkn~FFEaL~e~GK-dFEaI~~~i~~KnKdQVRhFYYrt~ 96 (787)
..||.+|...+.+++.+||. +...|+.+|..|+..|+|+.|++.+
T Consensus 4 ~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L 49 (52)
T 1guu_A 4 TRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVL 49 (52)
T ss_dssp CCCCHHHHHHHHHHHHHHCSSCHHHHHHTSTTCCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhCCCCHHHHHHHcCCCCHHHHHHHHHHHc
Confidence 57999999999999999998 9999999999999999999998764
No 17
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=96.98 E-value=0.001 Score=53.39 Aligned_cols=45 Identities=22% Similarity=0.468 Sum_probs=41.9
Q ss_pred ccccCCHHHHHHHHHHHHHhc-ccHHHHHHHhhhcchhHHHHHHHH
Q 003908 50 QWAAWTREEEESFFTALRQVG-KNFEKITHRVRSKNKDQVRHYYYR 94 (787)
Q Consensus 50 ~w~~Ws~eEkn~FFEaL~e~G-KdFEaI~~~i~~KnKdQVRhFYYr 94 (787)
....||.+|...+.+++.+|| ++...|+.+|..|+..|+|+.|++
T Consensus 7 ~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~ 52 (60)
T 2d9a_A 7 GKVKWTHEEDEQLRALVRQFGQQDWKFLASHFPNRTDQQCQYRWLR 52 (60)
T ss_dssp CCSCCCHHHHHHHHHHHHHTCTTCHHHHHHHCSSSCHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHccCCCHHHHHHHHHH
Confidence 346899999999999999999 699999999999999999999985
No 18
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.92 E-value=0.0021 Score=53.14 Aligned_cols=56 Identities=20% Similarity=0.421 Sum_probs=47.6
Q ss_pred ccCCHHHHHHHHHHHHHhc-ccHHHHHHHhhhcchhHHHHHHHHHHHHHHhhcCCCcccCCCCh
Q 003908 52 AAWTREEEESFFTALRQVG-KNFEKITHRVRSKNKDQVRHYYYRLVRRMNKLLGPGLCLDAKNS 114 (787)
Q Consensus 52 ~~Ws~eEkn~FFEaL~e~G-KdFEaI~~~i~~KnKdQVRhFYYrt~~rI~k~L~~~~~iD~kn~ 114 (787)
..||.+|-+.+.+++.+|| ++..+|+.+|..|+..|+|+.|++ ||.|.+.-.++-.
T Consensus 10 ~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~l~~Rt~~qcr~Rw~~-------~L~p~i~~~~wt~ 66 (70)
T 2dim_A 10 GVWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYE-------WLDPSIKKTEWSG 66 (70)
T ss_dssp CCCCHHHHHHHHHHHHHTCSSCHHHHHHHSTTCCHHHHHHHHHH-------TSCSSSCCCCSCC
T ss_pred CCCCHHHHHHHHHHHHHHCcCCHHHHHHHhcCCCHHHHHHHHHH-------HcCCcccCCCCCh
Confidence 6899999999999999999 899999999999999999999976 5556554444443
No 19
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=96.82 E-value=0.0042 Score=56.55 Aligned_cols=80 Identities=18% Similarity=0.306 Sum_probs=64.2
Q ss_pred ccccCCHHHHHHHHHHHHHhcccHHHHHHHhhhcchhHHHHHHHHHHHHHHhhcCCCcccCCCChhhHHHHHHHHHHHHH
Q 003908 50 QWAAWTREEEESFFTALRQVGKNFEKITHRVRSKNKDQVRHYYYRLVRRMNKLLGPGLCLDAKNSKDTNAAMLRWWSLLE 129 (787)
Q Consensus 50 ~w~~Ws~eEkn~FFEaL~e~GKdFEaI~~~i~~KnKdQVRhFYYrt~~rI~k~L~~~~~iD~kn~kev~~Am~~w~sl~~ 129 (787)
....||.+|-+...+++..||.+...|+.+|..|+..|+|+-|++ +|.|++.-.++..+|... ++ .+.+
T Consensus 10 kk~~WT~eED~~L~~~v~~~G~~W~~Ia~~~~~Rt~~qcr~Rw~~-------~l~p~~~~~~WT~eEd~~-L~---~~v~ 78 (126)
T 3osg_A 10 KKQKFTPEEDEMLKRAVAQHGSDWKMIAATFPNRNARQCRDRWKN-------YLAPSISHTPWTAEEDAL-LV---QKIQ 78 (126)
T ss_dssp SSCCCCHHHHHHHHHHHHHHTTCHHHHHHTCTTCCHHHHHHHHHH-------HTSTTSCCSCCCHHHHHH-HH---HHHH
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHhh-------hcccccccccCCHHHHHH-HH---HHHH
Confidence 346899999999999999999999999999999999999998885 456766666777776654 33 4557
Q ss_pred Hhccchhhhcc
Q 003908 130 KYSCKASKLHL 140 (787)
Q Consensus 130 K~gc~~sKL~~ 140 (787)
+||..+.++..
T Consensus 79 ~~G~~W~~Ia~ 89 (126)
T 3osg_A 79 EYGRQWAIIAK 89 (126)
T ss_dssp HHCSCHHHHHT
T ss_pred HHCcCHHHHHH
Confidence 78876666543
No 20
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=96.81 E-value=0.00084 Score=58.85 Aligned_cols=49 Identities=18% Similarity=0.527 Sum_probs=45.0
Q ss_pred ccccCCHHHHHHHHHHHHHhcccHHHHHHHhhhcchhHHHHHHHHHHHH
Q 003908 50 QWAAWTREEEESFFTALRQVGKNFEKITHRVRSKNKDQVRHYYYRLVRR 98 (787)
Q Consensus 50 ~w~~Ws~eEkn~FFEaL~e~GKdFEaI~~~i~~KnKdQVRhFYYrt~~r 98 (787)
....||.+|...+.+++++||.+...|+.+|..++..|||+.|+.++++
T Consensus 55 ~~~~Wt~eEd~~L~~~~~~~G~~W~~Ia~~l~gRt~~~~k~rw~~~~~~ 103 (105)
T 1gv2_A 55 KKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRR 103 (105)
T ss_dssp CCCCCCHHHHHHHHHHHHHHSSCHHHHHTTCTTCCHHHHHHHHHHHTC-
T ss_pred cccCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHHHhc
Confidence 3478999999999999999999999999999999999999999987764
No 21
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.79 E-value=0.0032 Score=51.53 Aligned_cols=50 Identities=20% Similarity=0.373 Sum_probs=45.2
Q ss_pred cccCCHHHHHHHHHHHHHhcccHHHHHHHhhhcchhHHHHHHHHHHHHHHh
Q 003908 51 WAAWTREEEESFFTALRQVGKNFEKITHRVRSKNKDQVRHYYYRLVRRMNK 101 (787)
Q Consensus 51 w~~Ws~eEkn~FFEaL~e~GKdFEaI~~~i~~KnKdQVRhFYYrt~~rI~k 101 (787)
...||.+|...+.++.+++|.+..+|+. +.-|+..|||..|++.++...+
T Consensus 9 k~~WT~eED~~L~~~~~~~g~~W~~Ia~-~~gRt~~qcr~Rw~~~l~~~~~ 58 (66)
T 2din_A 9 KTEWSREEEEKLLHLAKLMPTQWRTIAP-IIGRTAAQCLEHYEFLLDKAAQ 58 (66)
T ss_dssp CCCCCHHHHHHHHHHHHHCTTCHHHHHH-HHSSCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCCCHHHHhc-ccCcCHHHHHHHHHHHhChHhc
Confidence 3679999999999999999999999999 6679999999999998886654
No 22
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=96.79 E-value=0.0077 Score=53.32 Aligned_cols=76 Identities=18% Similarity=0.303 Sum_probs=61.7
Q ss_pred ccCCHHHHHHHHHHHHHhcc-cHHHHHHHhhhcchhHHHHHHHHHHHHHHhhcCCCcccCCCChhhHHHHHHHHHHHHHH
Q 003908 52 AAWTREEEESFFTALRQVGK-NFEKITHRVRSKNKDQVRHYYYRLVRRMNKLLGPGLCLDAKNSKDTNAAMLRWWSLLEK 130 (787)
Q Consensus 52 ~~Ws~eEkn~FFEaL~e~GK-dFEaI~~~i~~KnKdQVRhFYYrt~~rI~k~L~~~~~iD~kn~kev~~Am~~w~sl~~K 130 (787)
..||.+|-+.+.+++..||. +...|+.+|..++..|+|.-|.+ +|.|++.-.++..+|... |+ .+..+
T Consensus 2 ~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~-------~L~p~i~~~~WT~eEd~~-L~---~~~~~ 70 (107)
T 2k9n_A 2 VKFTEEEDLKLQQLVMRYGAKDWIRISQLMITRNPRQCRERWNN-------YINPALRTDPWSPEEDML-LD---QKYAE 70 (107)
T ss_dssp CSSCHHHHHHHHHHHHHHCSSCHHHHHHHTTTSCHHHHHHHHHH-------HSSSCCTTCCCCHHHHHH-HH---HHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCCHHHHhhhcCCCCHHHHHHHHHH-------HHcccccccccCHHHHHH-HH---HHHHH
Confidence 46999999999999999995 99999999999999999998764 678887777888777654 33 35577
Q ss_pred hccchhhh
Q 003908 131 YSCKASKL 138 (787)
Q Consensus 131 ~gc~~sKL 138 (787)
||..+.++
T Consensus 71 ~G~~W~~I 78 (107)
T 2k9n_A 71 YGPKWNKI 78 (107)
T ss_dssp TCSCHHHH
T ss_pred hCcCHHHH
Confidence 88655544
No 23
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=96.75 E-value=0.0026 Score=52.55 Aligned_cols=54 Identities=20% Similarity=0.433 Sum_probs=48.5
Q ss_pred cCCCccccccCCHHHHHHHHHHHHHhc-ccHHHHHHHhh--hcchhHHHHHHHHHHH
Q 003908 44 AKRPTRQWAAWTREEEESFFTALRQVG-KNFEKITHRVR--SKNKDQVRHYYYRLVR 97 (787)
Q Consensus 44 ~kk~~R~w~~Ws~eEkn~FFEaL~e~G-KdFEaI~~~i~--~KnKdQVRhFYYrt~~ 97 (787)
.+++++....||.+|.+...+++.+|| ++...|+.+|. .++-.|+|.-|.+.++
T Consensus 3 ~~~~~~~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~l~ 59 (69)
T 1ity_A 3 EKHRARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKK 59 (69)
T ss_dssp CTTCSSSCCCCCHHHHHHHHHHHHHHCSSCHHHHHHHSCCSSCCHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHCCCcHHHHHHHcCcCCCCHHHHHHHHHHHcC
Confidence 456677778999999999999999999 69999999999 8999999999987665
No 24
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=96.74 E-value=0.0021 Score=57.24 Aligned_cols=50 Identities=20% Similarity=0.434 Sum_probs=45.5
Q ss_pred ccCCHHHHHHHHHHHHHhc----ccHHHHHHHhhhcchhHHHHHHHHHHHHHHh
Q 003908 52 AAWTREEEESFFTALRQVG----KNFEKITHRVRSKNKDQVRHYYYRLVRRMNK 101 (787)
Q Consensus 52 ~~Ws~eEkn~FFEaL~e~G----KdFEaI~~~i~~KnKdQVRhFYYrt~~rI~k 101 (787)
..||.+|...|-+||..|| .+.++|+.+|..|+.+|||..|..+...|..
T Consensus 9 ~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vpGRT~~q~k~ry~~l~~dv~~ 62 (93)
T 2cjj_A 9 RPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVEDIKY 62 (93)
T ss_dssp CSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 5799999999999999997 5699999999999999999999999887643
No 25
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=96.73 E-value=0.0016 Score=59.35 Aligned_cols=50 Identities=12% Similarity=0.407 Sum_probs=46.8
Q ss_pred cccCCHHHHHHHHHHHHHhcccHHHHHHHhhhcchhHHHHHHHHHHHHHH
Q 003908 51 WAAWTREEEESFFTALRQVGKNFEKITHRVRSKNKDQVRHYYYRLVRRMN 100 (787)
Q Consensus 51 w~~Ws~eEkn~FFEaL~e~GKdFEaI~~~i~~KnKdQVRhFYYrt~~rI~ 100 (787)
...||.+|...+.+++++||.+..+|+.+|..|+..|||+.|+...+++.
T Consensus 62 ~~~WT~eEd~~L~~~v~~~G~~W~~Ia~~l~gRt~~~~k~rw~~l~~k~~ 111 (126)
T 3osg_A 62 HTPWTAEEDALLVQKIQEYGRQWAIIAKFFPGRTDIHIKNRWVTISNKLG 111 (126)
T ss_dssp CSCCCHHHHHHHHHHHHHHCSCHHHHHTTSTTCCHHHHHHHHHHHHHHTT
T ss_pred cccCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHhcC
Confidence 36899999999999999999999999999999999999999999888764
No 26
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=96.70 E-value=0.0016 Score=50.97 Aligned_cols=44 Identities=18% Similarity=0.470 Sum_probs=41.1
Q ss_pred ccCCHHHHHHHHHHHHHhcc-cHHHHHHHhhhcchhHHHHHHHHH
Q 003908 52 AAWTREEEESFFTALRQVGK-NFEKITHRVRSKNKDQVRHYYYRL 95 (787)
Q Consensus 52 ~~Ws~eEkn~FFEaL~e~GK-dFEaI~~~i~~KnKdQVRhFYYrt 95 (787)
..||.+|...+.+++.+||. +...|+.+|..|+..|+|+.|++.
T Consensus 4 ~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~ 48 (52)
T 1gvd_A 4 GPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNH 48 (52)
T ss_dssp CSCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHHCcChHHHHHHHcCCCCHHHHHHHHHHH
Confidence 58999999999999999995 899999999999999999999854
No 27
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=96.53 E-value=0.0073 Score=52.90 Aligned_cols=77 Identities=13% Similarity=0.327 Sum_probs=62.3
Q ss_pred ccCCHHHHHHHHHHHHHhcc-cHHHHHHHhhhcchhHHHHHHHHHHHHHHhhcCCCcccCCCChhhHHHHHHHHHHHHHH
Q 003908 52 AAWTREEEESFFTALRQVGK-NFEKITHRVRSKNKDQVRHYYYRLVRRMNKLLGPGLCLDAKNSKDTNAAMLRWWSLLEK 130 (787)
Q Consensus 52 ~~Ws~eEkn~FFEaL~e~GK-dFEaI~~~i~~KnKdQVRhFYYrt~~rI~k~L~~~~~iD~kn~kev~~Am~~w~sl~~K 130 (787)
..||.+|-..+.+++..||. +...|+.+|..|+..|+|+.|.+ +|.|++.-.++..+|-.. ++ .+.++
T Consensus 5 ~~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~-------~l~p~~~~~~Wt~eEd~~-L~---~~~~~ 73 (105)
T 1gv2_A 5 GPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHN-------HLNPEVKKTSWTEEEDRI-IY---QAHKR 73 (105)
T ss_dssp SCCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHH-------TTCCCCCCCCCCHHHHHH-HH---HHHHH
T ss_pred CCCCHHHHHHHHHHHHHhCCCcHHHHhhhhcCCCHHHHHHHHHh-------ccCCcccccCCCHHHHHH-HH---HHHHH
Confidence 57999999999999999995 89999999999999999998866 577877777887776644 33 35677
Q ss_pred hccchhhhc
Q 003908 131 YSCKASKLH 139 (787)
Q Consensus 131 ~gc~~sKL~ 139 (787)
||..+.++.
T Consensus 74 ~G~~W~~Ia 82 (105)
T 1gv2_A 74 LGNRWAEIA 82 (105)
T ss_dssp HSSCHHHHH
T ss_pred hCCCHHHHH
Confidence 887655543
No 28
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=96.52 E-value=0.0029 Score=54.46 Aligned_cols=44 Identities=16% Similarity=0.369 Sum_probs=40.7
Q ss_pred ccCCHHHHHHHHHHHHHhcc----cHHHHHHHhhhcchhHHHHHHHHH
Q 003908 52 AAWTREEEESFFTALRQVGK----NFEKITHRVRSKNKDQVRHYYYRL 95 (787)
Q Consensus 52 ~~Ws~eEkn~FFEaL~e~GK----dFEaI~~~i~~KnKdQVRhFYYrt 95 (787)
..||.+|...|=+||..|++ +.++|+.+|..|+++||++.|..+
T Consensus 9 ~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~gKT~eE~~~hY~~l 56 (73)
T 1wgx_A 9 KEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGSRSPEECQRKYMEN 56 (73)
T ss_dssp SCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTTSCHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 57999999999999999997 499999999999999999999755
No 29
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=96.48 E-value=0.011 Score=53.68 Aligned_cols=78 Identities=14% Similarity=0.335 Sum_probs=62.8
Q ss_pred cccCCHHHHHHHHHHHHHhc-ccHHHHHHHhhhcchhHHHHHHHHHHHHHHhhcCCCcccCCCChhhHHHHHHHHHHHHH
Q 003908 51 WAAWTREEEESFFTALRQVG-KNFEKITHRVRSKNKDQVRHYYYRLVRRMNKLLGPGLCLDAKNSKDTNAAMLRWWSLLE 129 (787)
Q Consensus 51 w~~Ws~eEkn~FFEaL~e~G-KdFEaI~~~i~~KnKdQVRhFYYrt~~rI~k~L~~~~~iD~kn~kev~~Am~~w~sl~~ 129 (787)
...||.+|-..+-+++.+|| ++..+|+.+|..++..|+|+.|.+ +|.|++.-.++..+|... ++ ++.+
T Consensus 27 k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~-------~l~p~~~~~~WT~eEd~~-L~---~~~~ 95 (128)
T 1h8a_C 27 KGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKGRIGKQCRERWHN-------HLNPEVKKTSWTEEEDRI-IY---QAHK 95 (128)
T ss_dssp CSCCCHHHHHHHHHHHHHTCSCCHHHHHHHSSSCCHHHHHHHHHH-------TTCSSSCCSCCCHHHHHH-HH---HHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhcCCcHHHHHHHHHH-------hcccccccccCCHHHHHH-HH---HHHH
Confidence 36899999999999999999 579999999999999999998875 677877777887776543 33 4557
Q ss_pred Hhccchhhhc
Q 003908 130 KYSCKASKLH 139 (787)
Q Consensus 130 K~gc~~sKL~ 139 (787)
+||-.+.++.
T Consensus 96 ~~G~~W~~Ia 105 (128)
T 1h8a_C 96 RLGNRWAEIA 105 (128)
T ss_dssp HHCSCHHHHG
T ss_pred HHCcCHHHHH
Confidence 7887665543
No 30
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=96.28 E-value=0.0017 Score=59.06 Aligned_cols=49 Identities=20% Similarity=0.529 Sum_probs=45.1
Q ss_pred ccccCCHHHHHHHHHHHHHhcccHHHHHHHhhhcchhHHHHHHHHHHHH
Q 003908 50 QWAAWTREEEESFFTALRQVGKNFEKITHRVRSKNKDQVRHYYYRLVRR 98 (787)
Q Consensus 50 ~w~~Ws~eEkn~FFEaL~e~GKdFEaI~~~i~~KnKdQVRhFYYrt~~r 98 (787)
....||.+|...+.+++++||.+...|+.+|..++..||++.|+.+++|
T Consensus 78 ~~~~WT~eEd~~L~~~~~~~G~~W~~Ia~~l~gRt~~~~k~r~~~~~~~ 126 (128)
T 1h8a_C 78 KKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAVKNHWNSTMRR 126 (128)
T ss_dssp CCSCCCHHHHHHHHHHHHHHCSCHHHHGGGSTTCCHHHHHHHHHTTTTC
T ss_pred ccccCCHHHHHHHHHHHHHHCcCHHHHHHHCCCCCHHHHHHHHHHHHhc
Confidence 3478999999999999999999999999999999999999999977653
No 31
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=95.91 E-value=0.0083 Score=51.05 Aligned_cols=45 Identities=20% Similarity=0.360 Sum_probs=39.1
Q ss_pred ccCCHHHHHHHHHHHHHhc----ccHHHHHHHhhhcchhHHHHHHHHHHH
Q 003908 52 AAWTREEEESFFTALRQVG----KNFEKITHRVRSKNKDQVRHYYYRLVR 97 (787)
Q Consensus 52 ~~Ws~eEkn~FFEaL~e~G----KdFEaI~~~i~~KnKdQVRhFYYrt~~ 97 (787)
..||.+|...|=.||+.|+ ...++|+.+| -|+.+||+.+|-.+..
T Consensus 9 ~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~l-gRt~~eV~~~y~~L~~ 57 (72)
T 2cqq_A 9 PEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-GRSVTDVTTKAKQLKD 57 (72)
T ss_dssp CCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH-TSCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHh-CCCHHHHHHHHHHHHH
Confidence 5799999999999999997 5699999999 7999999997655433
No 32
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=95.86 E-value=0.013 Score=50.07 Aligned_cols=43 Identities=16% Similarity=0.236 Sum_probs=40.6
Q ss_pred ccCCHHHHHHHHHHHHHhcccHHHHHHHhhhcchhHHHHHHHHH
Q 003908 52 AAWTREEEESFFTALRQVGKNFEKITHRVRSKNKDQVRHYYYRL 95 (787)
Q Consensus 52 ~~Ws~eEkn~FFEaL~e~GKdFEaI~~~i~~KnKdQVRhFYYrt 95 (787)
..||.||.+...+++.++|.+...|+.+| .++-.|||+.|+.+
T Consensus 24 ~~wT~EED~~L~~l~~~~G~kW~~IA~~l-gRt~~q~knRw~~L 66 (73)
T 2llk_A 24 GKYTPEEIEKLKELRIKHGNDWATIGAAL-GRSASSVKDRCRLM 66 (73)
T ss_dssp CSSCHHHHHHHHHHHHHHSSCHHHHHHHH-TSCHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHHHHCCCHHHHHHHh-CCCHHHHHHHHHHH
Confidence 68999999999999999999999999999 99999999998743
No 33
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=95.64 E-value=0.016 Score=45.53 Aligned_cols=46 Identities=20% Similarity=0.449 Sum_probs=42.4
Q ss_pred ccCCHHHHHHHHHHHHHhc-ccHHHHHHHhh--hcchhHHHHHHHHHHH
Q 003908 52 AAWTREEEESFFTALRQVG-KNFEKITHRVR--SKNKDQVRHYYYRLVR 97 (787)
Q Consensus 52 ~~Ws~eEkn~FFEaL~e~G-KdFEaI~~~i~--~KnKdQVRhFYYrt~~ 97 (787)
..||.+|.....+++.+|| ++...|+.+|. .++-.|+|+-|.+..+
T Consensus 3 ~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~~k 51 (53)
T 1w0t_A 3 QAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKK 51 (53)
T ss_dssp CCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCCCHHHHHHHHHHHHc
Confidence 5799999999999999999 79999999999 8999999998887654
No 34
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=95.63 E-value=0.041 Score=51.55 Aligned_cols=78 Identities=14% Similarity=0.320 Sum_probs=62.1
Q ss_pred ccccCCHHHHHHHHHHHHHhc-ccHHHHHHHhhhcchhHHHHHHHHHHHHHHhhcCCCcccCCCChhhHHHHHHHHHHHH
Q 003908 50 QWAAWTREEEESFFTALRQVG-KNFEKITHRVRSKNKDQVRHYYYRLVRRMNKLLGPGLCLDAKNSKDTNAAMLRWWSLL 128 (787)
Q Consensus 50 ~w~~Ws~eEkn~FFEaL~e~G-KdFEaI~~~i~~KnKdQVRhFYYrt~~rI~k~L~~~~~iD~kn~kev~~Am~~w~sl~ 128 (787)
....||.+|.....+++.+|| ++...|+.+|..++..|+|..|++ +|.|+..-.++..+|... ++ .+.
T Consensus 57 ~~~~Wt~eEd~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~-------~l~p~~~~~~WT~eEd~~-L~---~~~ 125 (159)
T 1h89_C 57 IKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHN-------HLNPEVKKTSWTEEEDRI-IY---QAH 125 (159)
T ss_dssp CCSCCCHHHHHHHHHHHHHHCSCCHHHHHHTSTTCCHHHHHHHHHH-------TTCTTSCCSCCCHHHHHH-HH---HHH
T ss_pred CCCCCChHHHHHHHHHHHHhCcccHHHHHHHcCCCCHHHHHHHHHH-------HhCccccccCCChHHHHH-HH---HHH
Confidence 347899999999999999999 589999999999999999998865 577777677777766654 33 455
Q ss_pred HHhccchhhh
Q 003908 129 EKYSCKASKL 138 (787)
Q Consensus 129 ~K~gc~~sKL 138 (787)
++||..+.++
T Consensus 126 ~~~g~~W~~I 135 (159)
T 1h89_C 126 KRLGNRWAEI 135 (159)
T ss_dssp HHHCSCHHHH
T ss_pred HHHCCCHHHH
Confidence 7778655544
No 35
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=95.63 E-value=0.0046 Score=57.97 Aligned_cols=49 Identities=18% Similarity=0.527 Sum_probs=45.1
Q ss_pred ccccCCHHHHHHHHHHHHHhcccHHHHHHHhhhcchhHHHHHHHHHHHH
Q 003908 50 QWAAWTREEEESFFTALRQVGKNFEKITHRVRSKNKDQVRHYYYRLVRR 98 (787)
Q Consensus 50 ~w~~Ws~eEkn~FFEaL~e~GKdFEaI~~~i~~KnKdQVRhFYYrt~~r 98 (787)
....||.+|...+.+++++||.+...|+.+|..++..||++.|+.+++|
T Consensus 109 ~~~~WT~eEd~~L~~~~~~~g~~W~~Ia~~l~gRt~~~~knr~~~~~r~ 157 (159)
T 1h89_C 109 KKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRR 157 (159)
T ss_dssp CCSCCCHHHHHHHHHHHHHHCSCHHHHHTTSTTCCHHHHHHHHHTTTCC
T ss_pred cccCCChHHHHHHHHHHHHHCCCHHHHHHHCCCCCHHHHHHHHHHHHhc
Confidence 4478999999999999999999999999999999999999999977653
No 36
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=95.45 E-value=0.0075 Score=55.17 Aligned_cols=48 Identities=19% Similarity=0.497 Sum_probs=45.0
Q ss_pred ccCCHHHHHHHHHHHHHhcccHHHHHHHhhhcchhHHHHHHHHHHHHH
Q 003908 52 AAWTREEEESFFTALRQVGKNFEKITHRVRSKNKDQVRHYYYRLVRRM 99 (787)
Q Consensus 52 ~~Ws~eEkn~FFEaL~e~GKdFEaI~~~i~~KnKdQVRhFYYrt~~rI 99 (787)
..||.+|...+.+++.+||.+...|+.+|..++..|||+.|++.+++-
T Consensus 55 ~~Wt~eEd~~L~~~~~~~G~~W~~Ia~~l~gRt~~~~k~rw~~~l~~~ 102 (131)
T 3zqc_A 55 HAWTPEEDETIFRNYLKLGSKWSVIAKLIPGRTDNAIKNRWNSSISKR 102 (131)
T ss_dssp SCCCHHHHHHHHHHHHHSCSCHHHHTTTSTTCCHHHHHHHHHHTTGGG
T ss_pred CCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 589999999999999999999999999999999999999999887654
No 37
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=95.08 E-value=0.036 Score=45.85 Aligned_cols=46 Identities=20% Similarity=0.381 Sum_probs=40.6
Q ss_pred ccCCHHHHHHHHHHHHHhc-ccHHHHHHHhh--hcchhHHHHHHHHHHH
Q 003908 52 AAWTREEEESFFTALRQVG-KNFEKITHRVR--SKNKDQVRHYYYRLVR 97 (787)
Q Consensus 52 ~~Ws~eEkn~FFEaL~e~G-KdFEaI~~~i~--~KnKdQVRhFYYrt~~ 97 (787)
..||.||-+...+++.+|| ++..+|+..+. .++-.|+|+-|.+..+
T Consensus 12 ~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~nl~k 60 (64)
T 3sjm_A 12 QKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKR 60 (64)
T ss_dssp CCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHccCCCchHHHHhhcCCCCCCHHHHHHHHHHHhc
Confidence 5799999999999999999 69999999865 7899999998876543
No 38
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=94.97 E-value=0.031 Score=51.08 Aligned_cols=78 Identities=18% Similarity=0.314 Sum_probs=63.0
Q ss_pred ccCCHHHHHHHHHHHHHhc-ccHHHHHHHhhhcchhHHHHHHHHHHHHHHhhcCCCcccCCCChhhHHHHHHHHHHHHHH
Q 003908 52 AAWTREEEESFFTALRQVG-KNFEKITHRVRSKNKDQVRHYYYRLVRRMNKLLGPGLCLDAKNSKDTNAAMLRWWSLLEK 130 (787)
Q Consensus 52 ~~Ws~eEkn~FFEaL~e~G-KdFEaI~~~i~~KnKdQVRhFYYrt~~rI~k~L~~~~~iD~kn~kev~~Am~~w~sl~~K 130 (787)
..||.+|-+...+++..|| ++...|+.+|..|+..|+|+-|++ +|.|++.-.++..+|... |+ .+..+
T Consensus 3 g~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~-------~l~p~~~~~~Wt~eEd~~-L~---~~~~~ 71 (131)
T 3zqc_A 3 GPFTEAEDDLIREYVKENGPQNWPRITSFLPNRSPKQCRERWFN-------HLDPAVVKHAWTPEEDET-IF---RNYLK 71 (131)
T ss_dssp SSCCHHHHHHHHHHHHHHCSCCGGGGTTSCTTSCHHHHHHHHHH-------HTSTTCCCSCCCHHHHHH-HH---HHHHH
T ss_pred CCCCHHHHHHHHHHHHHhCcCCHHHHHHHHCCCCHHHHHHHHhh-------ccCccccCCCCCHHHHHH-HH---HHHHH
Confidence 5799999999999999999 799999999999999999998875 456766667787777654 33 35678
Q ss_pred hccchhhhcc
Q 003908 131 YSCKASKLHL 140 (787)
Q Consensus 131 ~gc~~sKL~~ 140 (787)
||..+.++..
T Consensus 72 ~G~~W~~Ia~ 81 (131)
T 3zqc_A 72 LGSKWSVIAK 81 (131)
T ss_dssp SCSCHHHHTT
T ss_pred HCcCHHHHHH
Confidence 8876666544
No 39
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=94.28 E-value=0.27 Score=45.87 Aligned_cols=63 Identities=16% Similarity=0.290 Sum_probs=52.0
Q ss_pred ccCCCccccccCCHHHHHHHHHHHHHhcc-cHHHHHHHh----hhcchhHHHHHHHHHHHHHHhhcCCCc
Q 003908 43 SAKRPTRQWAAWTREEEESFFTALRQVGK-NFEKITHRV----RSKNKDQVRHYYYRLVRRMNKLLGPGL 107 (787)
Q Consensus 43 ~~kk~~R~w~~Ws~eEkn~FFEaL~e~GK-dFEaI~~~i----~~KnKdQVRhFYYrt~~rI~k~L~~~~ 107 (787)
...+++|....||.+|....-+++.+||. +...|+... ..++-.|++.-|.+..++ ..+.|.+
T Consensus 9 ~~~~~rr~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~~RT~v~lKdRWrnllk~--~~~~p~~ 76 (121)
T 2juh_A 9 SELSQRRIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHT--ASIAPQQ 76 (121)
T ss_dssp CCCCCCCSSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCSSCCSHHHHHHHHHHHHH--HHTCSTT
T ss_pred ccccCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccCCCCHHHHHHHHHHHHhh--hccCCcc
Confidence 34556777789999999999999999997 999999996 578889999998888875 3345543
No 40
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=94.19 E-value=0.0041 Score=53.93 Aligned_cols=42 Identities=24% Similarity=0.462 Sum_probs=38.4
Q ss_pred ccCCHHHHHHHHHHHHHhcc----cHHHHHHHhhhcchhHHHHHHH
Q 003908 52 AAWTREEEESFFTALRQVGK----NFEKITHRVRSKNKDQVRHYYY 93 (787)
Q Consensus 52 ~~Ws~eEkn~FFEaL~e~GK----dFEaI~~~i~~KnKdQVRhFYY 93 (787)
..||.+|...|=.||..|.+ .+++|+.+|..|+++||+..|-
T Consensus 21 ~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~VpGKT~eEVk~hY~ 66 (74)
T 4eef_G 21 RPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVKGRTPEEVKKHYE 66 (74)
T ss_dssp -CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSCSSCHHHHHGGGC
T ss_pred CCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcCCCCHHHHHHHHH
Confidence 57999999999999999998 5999999999999999999884
No 41
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=94.03 E-value=0.45 Score=44.40 Aligned_cols=72 Identities=15% Similarity=0.233 Sum_probs=55.1
Q ss_pred ccCCCccccccCCHHHHHHHHHHHHHhcc-cHHHHHHHh----hhcchhHHHHHHHHHHHHHHhhcCCCcccCCCChhh
Q 003908 43 SAKRPTRQWAAWTREEEESFFTALRQVGK-NFEKITHRV----RSKNKDQVRHYYYRLVRRMNKLLGPGLCLDAKNSKD 116 (787)
Q Consensus 43 ~~kk~~R~w~~Ws~eEkn~FFEaL~e~GK-dFEaI~~~i----~~KnKdQVRhFYYrt~~rI~k~L~~~~~iD~kn~ke 116 (787)
...+.+|....||.+|.+..-+++.+||. +...|.... ..++-.|+|.-|.+..++- .+.|...-...-++|
T Consensus 23 ~~~~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~~RT~vdlKdRWrnllk~~--~~~p~~kr~~~~p~e 99 (122)
T 2roh_A 23 PDFGQRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLVHTA--SIAPQQRRGAPVPQE 99 (122)
T ss_dssp CCCCCCCCCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSCCCCHHHHHHHHHHHHHHH--HSCTTTCCCSSCCHH
T ss_pred cCcCCCCCCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhc--cCCccccCCCCCCHH
Confidence 34566778899999999999999999997 999999986 5788899999888877643 234444334444555
No 42
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=93.49 E-value=0.22 Score=43.43 Aligned_cols=73 Identities=16% Similarity=0.304 Sum_probs=54.5
Q ss_pred cCCHHHHHHHHHHHHHhcc-cHHHHHHH----hhhcchhHHHHHHHHHHHHHH--hhcCCCcccCCCChhhHHHHHHHHH
Q 003908 53 AWTREEEESFFTALRQVGK-NFEKITHR----VRSKNKDQVRHYYYRLVRRMN--KLLGPGLCLDAKNSKDTNAAMLRWW 125 (787)
Q Consensus 53 ~Ws~eEkn~FFEaL~e~GK-dFEaI~~~----i~~KnKdQVRhFYYrt~~rI~--k~L~~~~~iD~kn~kev~~Am~~w~ 125 (787)
.||.+|....-+++.+||. +...|... +..++-.|++..|.+..++-. .-+.-+-.+ |.+.-+-+.++.-||
T Consensus 2 ~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~~RT~~~lKdrWrnllk~~~~~p~~~~~~~~-p~~~~~rv~~~~a~~ 80 (83)
T 2ckx_A 2 PFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQRRGEPV-PQDLLDRVLAAHAYW 80 (83)
T ss_dssp CCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHHHSCGGGCCSSCC-CHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccCCCCHHHHHHHHHHHHHhccCCcccccCCCC-CHHHHHHHHHHHHHH
Confidence 6999999999999999997 99999996 778999999999998887443 122323333 444444455666666
Q ss_pred H
Q 003908 126 S 126 (787)
Q Consensus 126 s 126 (787)
+
T Consensus 81 ~ 81 (83)
T 2ckx_A 81 S 81 (83)
T ss_dssp H
T ss_pred h
Confidence 5
No 43
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=93.19 E-value=0.16 Score=46.30 Aligned_cols=56 Identities=13% Similarity=0.235 Sum_probs=46.2
Q ss_pred ccCCCccccccCCHHHHHHHHHHHHHhcc-cHHHHHHHh----hhcchhHHHHHHHHHHHH
Q 003908 43 SAKRPTRQWAAWTREEEESFFTALRQVGK-NFEKITHRV----RSKNKDQVRHYYYRLVRR 98 (787)
Q Consensus 43 ~~kk~~R~w~~Ws~eEkn~FFEaL~e~GK-dFEaI~~~i----~~KnKdQVRhFYYrt~~r 98 (787)
...+++|....||.+|....-+++..||. +...|...+ ..++-.|++.-|.+..++
T Consensus 5 ~~~~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk~ 65 (105)
T 2aje_A 5 LEDPQRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHT 65 (105)
T ss_dssp ----CCCCCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTCCCHHHHHHHHHHHHHT
T ss_pred ccccCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhh
Confidence 45667777789999999999999999997 999999965 578889999998887764
No 44
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=91.44 E-value=0.14 Score=53.97 Aligned_cols=52 Identities=25% Similarity=0.514 Sum_probs=47.9
Q ss_pred cccCCHHHHHHHHHHHHHhcc-cHHHHHHHhhhcchhHHHHHHHHHHHHHHhh
Q 003908 51 WAAWTREEEESFFTALRQVGK-NFEKITHRVRSKNKDQVRHYYYRLVRRMNKL 102 (787)
Q Consensus 51 w~~Ws~eEkn~FFEaL~e~GK-dFEaI~~~i~~KnKdQVRhFYYrt~~rI~k~ 102 (787)
...|+..|-+.|..|+..||. |+++|+..|..|+.++|+.||--.|.|...+
T Consensus 110 F~~W~rrdf~~Fi~a~~kyGr~~~~~IA~ev~~Kt~eEV~~Y~~vFw~ry~ei 162 (304)
T 1ofc_X 110 FTAWTKRDFNQFIKANEKYGRDDIDNIAKDVEGKTPEEVIEYNAVFWERCTEL 162 (304)
T ss_dssp CTTCCHHHHHHHHHHHHHHCTTCHHHHTTSSTTCCHHHHHHHHHHHHHHGGGC
T ss_pred hcccCHHHHHHHHHHHHHhCHHHHHHHHHHhcCCCHHHHHHHHHHHHHhHHHh
Confidence 457999999999999999996 9999999999999999999999999998653
No 45
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=89.66 E-value=0.6 Score=41.87 Aligned_cols=52 Identities=21% Similarity=0.522 Sum_probs=48.5
Q ss_pred ccCCHHHHHHHHHHHHHhcccHHHHHHHhh-----hcchhHHHHHHHHHHHHHHhhc
Q 003908 52 AAWTREEEESFFTALRQVGKNFEKITHRVR-----SKNKDQVRHYYYRLVRRMNKLL 103 (787)
Q Consensus 52 ~~Ws~eEkn~FFEaL~e~GKdFEaI~~~i~-----~KnKdQVRhFYYrt~~rI~k~L 103 (787)
..||.+|-+.-|+-.+++|-.|-.|+.+.. .++.++|+.=||...++|.+.=
T Consensus 31 ~~WTkEETd~Lf~L~~~fdlRW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~~~l~~~r 87 (93)
T 3hm5_A 31 DAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANVR 87 (93)
T ss_dssp TTBCHHHHHHHHHHHHHTTTCHHHHHHHSCTTTSCCCCHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHhCCCeeeehhhhccCCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 799999999999999999999999999994 6789999999999999998763
No 46
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=89.64 E-value=0.43 Score=46.12 Aligned_cols=58 Identities=14% Similarity=0.233 Sum_probs=47.2
Q ss_pred ccccccCCHHHHHHHHHHHHHhc---ccHHHHHHH--hhhcchhHHHHHHHHHHHHHHhhcCC
Q 003908 48 TRQWAAWTREEEESFFTALRQVG---KNFEKITHR--VRSKNKDQVRHYYYRLVRRMNKLLGP 105 (787)
Q Consensus 48 ~R~w~~Ws~eEkn~FFEaL~e~G---KdFEaI~~~--i~~KnKdQVRhFYYrt~~rI~k~L~~ 105 (787)
+-....||..|.+.|+-|+..|| .+.|.|..- +..|+.++|+.||...|.+..+.+..
T Consensus 4 ~~~~~~~t~~E~r~fira~~kfG~~~~r~~~I~~da~L~~Ks~~~v~~y~~~f~~~c~~~~~~ 66 (211)
T 4b4c_A 4 RENIKGFSDAEIRRFIKSYKKFGGPLERLDAIARDAELVDKSETDLRRLGELVHNGCIKALKD 66 (211)
T ss_dssp ----CCSCHHHHHHHHHHHTTCSSGGGCHHHHHHHTTCTTSCHHHHHHHHHHHHHHHHHHHC-
T ss_pred cccCCCCCHHHHHHHHHHHHHHCCchhHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 34457899999999999999999 689999876 45899999999999999887787664
No 47
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=88.09 E-value=0.3 Score=41.13 Aligned_cols=51 Identities=20% Similarity=0.380 Sum_probs=41.6
Q ss_pred cccccCCHHHHHHHHHHHHHhcccHHHHHH---HhhhcchhHHHHHHHHHHHHH
Q 003908 49 RQWAAWTREEEESFFTALRQVGKNFEKITH---RVRSKNKDQVRHYYYRLVRRM 99 (787)
Q Consensus 49 R~w~~Ws~eEkn~FFEaL~e~GKdFEaI~~---~i~~KnKdQVRhFYYrt~~rI 99 (787)
|....||.||.+.-.+++++||+...+|.. ++..++--.+..=|+++++++
T Consensus 6 ~~r~~WT~EE~~~L~~gV~k~G~~W~~I~~~y~f~~~RT~VdLKdk~r~L~k~~ 59 (62)
T 1x58_A 6 SGRKDFTKEEVNYLFHGVKTMGNHWNSILWSFPFQKGRRAVDLAHKYHRLISGP 59 (62)
T ss_dssp CCSSSCCHHHHHHHHHHHHHHCSCHHHHHHHSCCCTTCCHHHHHHHHHHHHTCS
T ss_pred CCCCCCCHHHHHHHHHHHHHHhHhHHHHHHhCCCccCcccchHHHHHHHHHhcc
Confidence 455789999999999999999999999995 556777777777777766643
No 48
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=87.05 E-value=1.2 Score=40.12 Aligned_cols=54 Identities=20% Similarity=0.495 Sum_probs=49.0
Q ss_pred ccCCHHHHHHHHHHHHHhcccHHHHHHHhh-----hcchhHHHHHHHHHHHHHHhhcCC
Q 003908 52 AAWTREEEESFFTALRQVGKNFEKITHRVR-----SKNKDQVRHYYYRLVRRMNKLLGP 105 (787)
Q Consensus 52 ~~Ws~eEkn~FFEaL~e~GKdFEaI~~~i~-----~KnKdQVRhFYYrt~~rI~k~L~~ 105 (787)
..||.+|...-|+-.++++..|--|..+.. .++.+++..=||...++|.+.=.+
T Consensus 31 ~~WT~eETd~LfdLc~~fdlRw~vI~DRy~~~~~~~RtvEdLK~RYY~V~~~l~~~r~~ 89 (93)
T 4iej_A 31 DAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANVRAV 89 (93)
T ss_dssp TTBCHHHHHHHHHHHHHTTTCHHHHHHHCCTTTSCCCCHHHHHHHHHHHHHHHHHHTC-
T ss_pred CCCCHHHHHHHHHHHHHcCCCeEEEeeccccCCCCCCCHHHHHHHHHHHHHHHHHhhCC
Confidence 579999999999999999999999999985 578899999999999999987654
No 49
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=86.49 E-value=3.6 Score=37.26 Aligned_cols=60 Identities=20% Similarity=0.393 Sum_probs=52.1
Q ss_pred cCCCccccccCCHHHHHHHHHHHHHhc---ccHHHHHHHhhhcchhHHHHHHHHHHHHHHhhc
Q 003908 44 AKRPTRQWAAWTREEEESFFTALRQVG---KNFEKITHRVRSKNKDQVRHYYYRLVRRMNKLL 103 (787)
Q Consensus 44 ~kk~~R~w~~Ws~eEkn~FFEaL~e~G---KdFEaI~~~i~~KnKdQVRhFYYrt~~rI~k~L 103 (787)
.+++--....||.+|-+.--.+.++-| +-|-.|+..+..|+..||++=||.+|+=+.+..
T Consensus 26 ~~s~Ge~VvlWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L~Nks~nqV~~RFq~Lm~Lf~~~~ 88 (95)
T 1ug2_A 26 VSSTGEKVVLWTREADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFRELMQLFHTAC 88 (95)
T ss_dssp CCCCCCCCSSSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHSSCCHHHHHHHHHHHHHHHHHCS
T ss_pred ecCCCCEEEEeccccCHHHHHHHHhcCCChhHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHh
Confidence 445555668999999999999999997 599999999999999999999999999777753
No 50
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=80.82 E-value=0.79 Score=49.72 Aligned_cols=51 Identities=22% Similarity=0.465 Sum_probs=46.2
Q ss_pred cccCCHHHHHHHHHHHHHhccc-HHHHHHHhh-hcchhHHHHHHHHHHHHHHh
Q 003908 51 WAAWTREEEESFFTALRQVGKN-FEKITHRVR-SKNKDQVRHYYYRLVRRMNK 101 (787)
Q Consensus 51 w~~Ws~eEkn~FFEaL~e~GKd-FEaI~~~i~-~KnKdQVRhFYYrt~~rI~k 101 (787)
...|+.-|=+.|-.|...||.+ +++|+..|. .|+.++|+.|+--.|.|...
T Consensus 123 F~~WnrrDF~~FI~a~~kyGR~d~~~IA~ev~~~Kt~eEV~~Y~~vFw~Ry~E 175 (374)
T 2y9y_A 123 FTNWNKLEFRKFITVSGKYGRNSIQAIARELAPGKTLEEVRAYAKAFWSNIER 175 (374)
T ss_dssp CCCSCHHHHHHHHHHHHHHCTTCHHHHHSSCCCSSSHHHHHHHHHHHHHTCSS
T ss_pred hcccCHHHHHHHHHHHHHhCHhHHHHHHHHHccCCCHHHHHHHHHHHHHhhhh
Confidence 3479999999999999999965 999999999 99999999999999987654
No 51
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=76.06 E-value=1.2 Score=46.13 Aligned_cols=48 Identities=23% Similarity=0.461 Sum_probs=44.1
Q ss_pred cccCCHHHHHHHHHHHHHhccc------HHHHHHHhhhcchhHHHHHHHHHHHH
Q 003908 51 WAAWTREEEESFFTALRQVGKN------FEKITHRVRSKNKDQVRHYYYRLVRR 98 (787)
Q Consensus 51 w~~Ws~eEkn~FFEaL~e~GKd------FEaI~~~i~~KnKdQVRhFYYrt~~r 98 (787)
...||.+|-+.-.++.+++|.. +..|+.+|..++--|||+.|..++++
T Consensus 8 k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~LpGRT~nsIRnRw~~~L~~ 61 (246)
T 1ign_A 8 KASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSK 61 (246)
T ss_dssp CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTTSCHHHHHHHHHHTTGG
T ss_pred CCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcCCCCHHHHHHHHHHHHhh
Confidence 3689999999999999999875 99999999999999999999988765
No 52
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=63.35 E-value=11 Score=31.79 Aligned_cols=42 Identities=21% Similarity=0.427 Sum_probs=32.9
Q ss_pred cccccCCHHHHHHHHHHHHHhccc---HHHHHHHhhhc--chhHHHH
Q 003908 49 RQWAAWTREEEESFFTALRQVGKN---FEKITHRVRSK--NKDQVRH 90 (787)
Q Consensus 49 R~w~~Ws~eEkn~FFEaL~e~GKd---FEaI~~~i~~K--nKdQVRh 90 (787)
+..-.||.|.-..|-+|+.+.|.+ =.+|...|... +..||.-
T Consensus 5 k~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkS 51 (64)
T 1irz_A 5 KPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVAS 51 (64)
T ss_dssp CSSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHH
T ss_pred CCCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHH
Confidence 344789999999999999999954 34788888855 5667753
No 53
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=32.11 E-value=86 Score=24.01 Aligned_cols=53 Identities=13% Similarity=0.149 Sum_probs=39.6
Q ss_pred cccCCHHHHHHHHHHHHHhcccHHHHHHHhhhcchhHHHHHHHHHHHHHHhhcCC
Q 003908 51 WAAWTREEEESFFTALRQVGKNFEKITHRVRSKNKDQVRHYYYRLVRRMNKLLGP 105 (787)
Q Consensus 51 w~~Ws~eEkn~FFEaL~e~GKdFEaI~~~i~~KnKdQVRhFYYrt~~rI~k~L~~ 105 (787)
...++..++..|. .....|..++.|+..+.. +...|+...+|..++|.++|..
T Consensus 13 l~~L~~~~r~il~-l~~~~g~s~~eIA~~lgi-s~~tv~~~~~ra~~~l~~~l~~ 65 (70)
T 2o8x_A 13 IADLTTDQREALL-LTQLLGLSYADAAAVCGC-PVGTIRSRVARARDALLADAEP 65 (70)
T ss_dssp TTSSCHHHHHHHH-HHHTSCCCHHHHHHHHTS-CHHHHHHHHHHHHHHHHC----
T ss_pred HHhCCHHHHHHHH-HHHHcCCCHHHHHHHHCc-CHHHHHHHHHHHHHHHHHHhhc
Confidence 3456777776654 444679999999999975 7889999999999999999875
No 54
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=31.71 E-value=60 Score=33.74 Aligned_cols=53 Identities=9% Similarity=0.233 Sum_probs=43.6
Q ss_pred ccCCHHHHHHHHHHHHHhc---ccHHHHHHH--hhhcchhHHHHHHHHHHHHHHhhcC
Q 003908 52 AAWTREEEESFFTALRQVG---KNFEKITHR--VRSKNKDQVRHYYYRLVRRMNKLLG 104 (787)
Q Consensus 52 ~~Ws~eEkn~FFEaL~e~G---KdFEaI~~~--i~~KnKdQVRhFYYrt~~rI~k~L~ 104 (787)
..|+.-|.+.||-+|..|| ..+|.|..- ++.|+.+.|+++|--.+.+-.+++.
T Consensus 4 ~~ltekEiR~l~Ra~~kfG~~~~R~e~I~~dA~L~~ks~~~i~~~~~~li~~c~~av~ 61 (270)
T 2xb0_X 4 GSIGESEVRALYKAILKFGNLKEILDELIADGTLPVKSFEKYGETYDEMMEAAKDCVH 61 (270)
T ss_dssp CCCCHHHHHHHHHHHHHHSSCTTCHHHHHHTTSSCCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHHHH
Confidence 4699999999999999999 688888654 3489999999999887776666543
No 55
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=27.31 E-value=1e+02 Score=26.64 Aligned_cols=49 Identities=12% Similarity=0.239 Sum_probs=38.4
Q ss_pred CCHHHHHHHHHHHHHhcccHHHHHHHhhhcchhHHHHHHHHHHHHHHhhcCC
Q 003908 54 WTREEEESFFTALRQVGKNFEKITHRVRSKNKDQVRHYYYRLVRRMNKLLGP 105 (787)
Q Consensus 54 Ws~eEkn~FFEaL~e~GKdFEaI~~~i~~KnKdQVRhFYYrt~~rI~k~L~~ 105 (787)
=+..++..|. +...|..++.|+..+.. +...|+..++|..++|.++|..
T Consensus 110 L~~~~r~v~~--~~~~g~s~~EIA~~lgi-s~~tV~~~~~ra~~~Lr~~l~~ 158 (164)
T 3mzy_A 110 FSKFEKEVLT--YLIRGYSYREIATILSK-NLKSIDNTIQRIRKKSEEWIKE 158 (164)
T ss_dssp SCHHHHHHHH--HHTTTCCHHHHHHHHTC-CHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHH--HHHcCCCHHHHHHHHCC-CHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555544 56679999999999874 7889999999999999998864
No 56
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=25.99 E-value=1.4e+02 Score=25.19 Aligned_cols=40 Identities=20% Similarity=0.427 Sum_probs=27.2
Q ss_pred cccCCHHHHHHHHHHHHHhcc----------cHHHHHHHhh----hcchhHHHH
Q 003908 51 WAAWTREEEESFFTALRQVGK----------NFEKITHRVR----SKNKDQVRH 90 (787)
Q Consensus 51 w~~Ws~eEkn~FFEaL~e~GK----------dFEaI~~~i~----~KnKdQVRh 90 (787)
...|+.+|...|.++..+... .++.|+..|. .++-+|.+.
T Consensus 4 ~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~ 57 (86)
T 2ebi_A 4 AETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTD 57 (86)
T ss_dssp SCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 478999999999999987544 3455555555 334455544
No 57
>2hzd_A Transcriptional enhancer factor TEF-1; DNA-binding, helix-turn-helix, gene regulation; NMR {Homo sapiens}
Probab=22.08 E-value=35 Score=30.17 Aligned_cols=47 Identities=21% Similarity=0.275 Sum_probs=36.3
Q ss_pred CCCceEEE----EEecCcHHHHHHHh-hcCCCceeEEeecCccchhHHHHHHhhhhccC
Q 003908 315 QTPVKLKL----QLYPIDDGTRKALE-MDNHNPHLELTLSTRKKISSVLEHLNRKWGNA 368 (787)
Q Consensus 315 ~~~~KikL----QLFPide~Tr~~le-~~g~nP~LELTLs~rKkiSsvl~HLn~KWg~S 368 (787)
.+..||+| +|+-.|+=+..-+- ..| ..+.||.|||-+|.|.++|..-
T Consensus 27 ~g~~k~~ls~~gk~~gRNelIs~yI~~~tG-------k~RtrKQVSShiQvlk~~~~~~ 78 (82)
T 2hzd_A 27 CGRRKIILSDEGKMYGRNELIARYIKLRTG-------KTRTRKQVSSHIQVLARRKSRD 78 (82)
T ss_dssp SSCCCCCHHHHCCCCCTHHHHHHHHHHHHS-------CCCCSHHHHHHHHHHHHHHTTC
T ss_pred CCccceeecccccccchhHHHHHHHHHHHc-------ccCCccchhHHHHHHHHHHhhh
Confidence 33445555 57788888887776 566 6899999999999999998653
No 58
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=27.25 E-value=19 Score=31.10 Aligned_cols=47 Identities=21% Similarity=0.480 Sum_probs=40.0
Q ss_pred cccCCHHHHHHHHHHHHHhcc---cHHHHHHHhhhcchhHHHHHHHHHHHH
Q 003908 51 WAAWTREEEESFFTALRQVGK---NFEKITHRVRSKNKDQVRHYYYRLVRR 98 (787)
Q Consensus 51 w~~Ws~eEkn~FFEaL~e~GK---dFEaI~~~i~~KnKdQVRhFYYrt~~r 98 (787)
.-.||.+|-+.--.+.++-|- -|-.|+..+ .|+.+||-+=|-.+++=
T Consensus 14 vvlWTReeDR~IL~~cq~~G~s~~tfa~iA~~L-nks~~QV~~RF~~Lm~L 63 (70)
T 2lr8_A 14 IILWTRNDDRVILLECQKRGPSSKTFAYLAAKL-DKNPNQVSERFQQLMKL 63 (70)
Confidence 467999999999999999984 999999999 89999998776666553
No 59
>3fap_B FRAP, FKBP12-rapamycin associated protein; complex, gene therapy, cell cycle; HET: ARD; 1.85A {Homo sapiens} SCOP: a.24.7.1 PDB: 2fap_B* 2rse_B 1nsg_B* 4fap_B* 1aue_A 2gaq_A 1fap_B*
Probab=21.47 E-value=1.1e+02 Score=27.20 Aligned_cols=30 Identities=27% Similarity=0.396 Sum_probs=23.2
Q ss_pred ccHHHHHHHhhhcc---hhHHHHHHHHHHHHHH
Q 003908 71 KNFEKITHRVRSKN---KDQVRHYYYRLVRRMN 100 (787)
Q Consensus 71 KdFEaI~~~i~~Kn---KdQVRhFYYrt~~rI~ 100 (787)
.-++-+.+|..++| ..|.-..||..++||+
T Consensus 62 ~A~~~~~~y~~t~~~~~l~qAWdiY~~V~~ri~ 94 (94)
T 3fap_B 62 EAQEWCRKYMKSGNVKDLTQAWDLYYHVFRRIS 94 (94)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhCChhhHHHHHHHHHHHHhccC
Confidence 34566677777765 5799999999999984
No 60
>2npu_A FKBP12-rapamycin complex-associated protein; four-helix bundle, transferase; NMR {Homo sapiens}
Probab=20.82 E-value=1.2e+02 Score=28.42 Aligned_cols=28 Identities=32% Similarity=0.487 Sum_probs=18.8
Q ss_pred HHHHHHhhhcch---hHHHHHHHHHHHHHHh
Q 003908 74 EKITHRVRSKNK---DQVRHYYYRLVRRMNK 101 (787)
Q Consensus 74 EaI~~~i~~KnK---dQVRhFYYrt~~rI~k 101 (787)
+.+.+|..+++. .|.-..||+.++||.|
T Consensus 95 ~~~~~y~~t~d~~~lnqAWd~Y~~Vf~rI~k 125 (126)
T 2npu_A 95 EWCRKYMKSGNVKDLTQAWDLYYHVFRRISK 125 (126)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhCChhHHHHHHHHHHHHHHHHhc
Confidence 334444445543 4888899999999875
No 61
>3ezq_B Protein FADD; apoptosis, DISC, FAS, membrane,receptor, transmembrane; 2.73A {Homo sapiens} PDB: 1e3y_A 1e41_A 3oq9_H
Probab=20.44 E-value=79 Score=29.05 Aligned_cols=49 Identities=16% Similarity=0.205 Sum_probs=27.7
Q ss_pred CCChhhHHHHHHHHHHHHHHhccchhhhccCchhh--HHHHHHHHHHHhhh
Q 003908 111 AKNSKDTNAAMLRWWSLLEKYSCKASKLHLKPRRF--KIFVEALEHQLLKD 159 (787)
Q Consensus 111 ~kn~kev~~Am~~w~sl~~K~gc~~sKL~~kp~r~--k~f~~~L~~~llK~ 159 (787)
+.|.++-.+.|+.-|.-++.-......|..-.++. +.+|+.|...+.+.
T Consensus 42 p~dl~eq~~~mL~~W~~r~G~~ATv~~L~~AL~~i~~~diAe~Ie~~l~~~ 92 (122)
T 3ezq_B 42 PRNLTERVRESLRIWKNTEKENATVAHLVGALRSCQMNLVADLVQEVQQAR 92 (122)
T ss_dssp SSCHHHHHHHHHHHHHHHCTTTCCHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 45666666777777766643334444444333333 33667776666655
Done!