BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 003909
(787 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3TLM|A Chain A, Crystal Structure Of Endoplasmic Reticulum Ca2+-Atpase
(Serca) From Bovine Muscle
Length = 992
Score = 771 bits (1992), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 428/805 (53%), Positives = 539/805 (66%), Gaps = 27/805 (3%)
Query: 1 MEDAYARSVVEVLDFFGVDPTKGLTDSQVARHVRIYGKNVLPQEKRTAFWKLVLKQFDDL 60
ME A++++ E L +FGV T GLT QV RH+ YG N LP E+ + W+LVL+QF+DL
Sbjct: 1 MEAAHSKTTEECLAYFGVSETTGLTPDQVKRHLEKYGHNELPAEEGKSLWELVLEQFEDL 60
Query: 61 LVKILIAAAVISFFLALIN-GETGLTAFLEPSXXXXXXXXXXXXXXXTETNAEKALEELR 119
LV+IL+ AA ISF LA GE +TAF+EP E NAE A+E L+
Sbjct: 61 LVRILLLAACISFVLAWFEEGEETVTAFVEPFVILLILIANAIVGVWQERNAENAIEALK 120
Query: 120 AYQADIATVLRNGCFSI--LPAAELVPGDIVEVNVGCKIPADMRMIEMLSNQLRVDQAIL 177
Y+ ++ V R S+ + A ++VPGDIVEV VG K+PAD+R++ + S LRVDQ+IL
Sbjct: 121 EYEPEMGKVYRADRKSVQRIKARDIVPGDIVEVAVGDKVPADIRILTIKSTTLRVDQSIL 180
Query: 178 TGESCSVEKELDSIIATNAVYQDKTNILFSGTXXXXXXXXXXXXXXXXNTAMGSIRDSML 237
TGES SV K + + AV QDK N+LFSGT T +G IRD M
Sbjct: 181 TGESVSVIKHTEPVPDPRAVNQDKKNMLFSGTNIAAGKAIGIVATTGVGTEIGKIRDQMA 240
Query: 238 QTEDEVTPLKKKLDEFGTFLAKVIAGICVLVWIVNIGHFRDPSHGG-FLRGAIHYFKIAV 296
TE + TPL++KLDEFG L+KVI+ ICV VW++NIGHF DP HGG ++RGAI+YFKIAV
Sbjct: 241 ATEQDKTPLQQKLDEFGEQLSKVISLICVAVWLINIGHFNDPVHGGSWIRGAIYYFKIAV 300
Query: 297 ALAVAAIPEGLPAVVTTCLALGTKRMARLNAIVRSLPSVETLGCTTVICSDKTGTLTTNM 356
ALAVAAIPEGLPAV+TTCLALGT+RMA+ NAIVRSLPSVETLGCT+VICSDKTGTLTTN
Sbjct: 301 ALAVAAIPEGLPAVITTCLALGTRRMAKKNAIVRSLPSVETLGCTSVICSDKTGTLTTNQ 360
Query: 357 MSVAKICVVHSVQQGP-IIAEYGVTGTTYAPEGVVFDSSGIQLEFPAQLPCLLHIARCSA 415
MSV K+ ++ + ++ E+ VTG+TYAPEG V + + Q L+ +A A
Sbjct: 361 MSVCKMFIIDRIDGDLCLLNEFSVTGSTYAPEGEVLKND--KPVRSGQYDGLVELATICA 418
Query: 416 LCNESVLQYNPDKGNYEKIGEATEVALRVLAEKVGLPGFDSMPSALNMLSKHERASYCNH 475
LCN+S L +N KG YEK+GEATE AL L EK+ + + + LSK ERA+ CN
Sbjct: 419 LCNDSSLDFNETKGIYEKVGEATETALTTLVEKMNV-----FNTEVRNLSKVERANACNS 473
Query: 476 HWEIEFKKVSILEFSRDRKMMSVLCSHKQMCV-----MFSKGAPESVLSRCTNILCNDNG 530
KK LEFSRDRK MSV CS + MF KGAPE V+ RC +
Sbjct: 474 VIRQLMKKEFTLEFSRDRKSMSVYCSPAKSRAAVGNKMFVKGAPEGVIDRCNYVRVGTTR 533
Query: 531 FIVPMTANIRAELESRLNSLA-GKEALRCLALALKQMPINRQTLSYDD-------EKDLT 582
VPMT ++ ++ S + G++ LRCLALA + P R+ + DD E DLT
Sbjct: 534 --VPMTGPVKEKILSVIKEWGTGRDTLRCLALATRDTPPKREEMVLDDSTKFMEYETDLT 591
Query: 583 FIGLVGMLDPPREEVKNAMLSCMTAGIRVIVVTGDNKSTAESICHKIGAFDHLVDFVGRS 642
F+G+VGMLDPPR+EV ++ C AGIRVI++TGDNK TA +IC +IG F D R+
Sbjct: 592 FVGVVGMLDPPRKEVMGSIQLCRDAGIRVIMITGDNKGTAIAICRRIGIFGENEDVADRA 651
Query: 643 YTASEFEELPAMQQTVALQHMALFTRVEPSHKRMLVEALQNQNEVVAMTGDGVNDAPALK 702
YT EF++LP +Q A + F RVEP+HK +VE LQ+ +E+ AMTGDGVNDAPALK
Sbjct: 652 YTGREFDDLPLAEQREACRRACCFARVEPTHKSKIVEYLQSFDEITAMTGDGVNDAPALK 711
Query: 703 KADIGIAMGSGTAVAKSASDMVLADDNFATIVAAVAEGRAIYNNTKQFIRYMISSNIGEV 762
KA+IGIAMGSGTAVAK+AS+MVLADDNF+TIVAAV EGRAIYNN KQFIRY+ISSN+GEV
Sbjct: 712 KAEIGIAMGSGTAVAKTASEMVLADDNFSTIVAAVEEGRAIYNNMKQFIRYLISSNVGEV 771
Query: 763 VCIFVAAVLGIPDTLAPVSLISVNI 787
VCIF+ A LG+P+ L PV L+ VN+
Sbjct: 772 VCIFLTAALGLPEALIPVQLLWVNL 796
>pdb|2DQS|A Chain A, Crystal Structure Of The Calcium Pump With Amppcp In The
Absence Of Calcium
pdb|2EAR|A Chain A, P21 Crystal Of The Sr Ca2+-Atpase With Bound Tg
pdb|2EAT|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Cpa And
Tg
pdb|2ZBF|A Chain A, Calcium Pump Crystal Structure With Bound Bef3 And Tg In
The Absence Of Calcium
pdb|2ZBG|A Chain A, Calcium Pump Crystal Structure With Bound Alf4 And Tg In
The Absence Of Calcium
pdb|3AR2|A Chain A, Calcium Pump Crystal Structure With Bound Amppcp And Ca2+
pdb|3AR3|A Chain A, Calcium Pump Crystal Structure With Bound Adp And Tg
pdb|3AR4|A Chain A, Calcium Pump Crystal Structure With Bound Atp And Tg In
The Absence Of Ca2+
pdb|3AR5|A Chain A, Calcium Pump Crystal Structure With Bound Tnp-Amp And Tg
pdb|3AR6|A Chain A, Calcium Pump Crystal Structure With Bound Tnp-Adp And Tg
In The Absence Of Calcium
pdb|3AR7|A Chain A, Calcium Pump Crystal Structure With Bound Tnp-Atp And Tg
In The Absence Of Ca2+
pdb|3AR8|A Chain A, Calcium Pump Crystal Structure With Bound Alf4, Tnp-Amp
And Tg
pdb|3AR9|A Chain A, Calcium Pump Crystal Structure With Bound Bef3, Tnp-Amp
And Tg In The Absence Of Calcium
pdb|2ZBE|A Chain A, Calcium Pump Crystal Structure With Bound Bef3 In The
Absence Of Calcium And Tg
pdb|2ZBE|B Chain B, Calcium Pump Crystal Structure With Bound Bef3 In The
Absence Of Calcium And Tg
pdb|2ZBD|A Chain A, Crystal Structure Of The Sr Calcium Pump With Bound
Aluminium Fluoride, Adp And Calcium
Length = 995
Score = 771 bits (1990), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 428/806 (53%), Positives = 539/806 (66%), Gaps = 28/806 (3%)
Query: 1 MEDAYARSVVEVLDFFGVDPTKGLTDSQVARHVRIYGKNVLPQEKRTAFWKLVLKQFDDL 60
ME A+++S E L +FGV T GLT QV RH+ YG N LP E+ + W+LV++QF+DL
Sbjct: 2 MEAAHSKSTEECLAYFGVSETTGLTPDQVKRHLEKYGHNELPAEEGKSLWELVIEQFEDL 61
Query: 61 LVKILIAAAVISFFLALIN-GETGLTAFLEPSXXXXXXXXXXXXXXXTETNAEKALEELR 119
LV+IL+ AA ISF LA GE +TAF+EP E NAE A+E L+
Sbjct: 62 LVRILLLAACISFVLAWFEEGEETITAFVEPFVILLILIANAIVGVWQERNAENAIEALK 121
Query: 120 AYQADIATVLRNGCFSI--LPAAELVPGDIVEVNVGCKIPADMRMIEMLSNQLRVDQAIL 177
Y+ ++ V R S+ + A ++VPGDIVEV VG K+PAD+R++ + S LRVDQ+IL
Sbjct: 122 EYEPEMGKVYRADRKSVQRIKARDIVPGDIVEVAVGDKVPADIRILSIKSTTLRVDQSIL 181
Query: 178 TGESCSVEKELDSIIATNAVYQDKTNILFSGTXXXXXXXXXXXXXXXXNTAMGSIRDSML 237
TGES SV K + + AV QDK N+LFSGT +T +G IRD M
Sbjct: 182 TGESVSVIKHTEPVPDPRAVNQDKKNMLFSGTNIAAGKALGIVATTGVSTEIGKIRDQMA 241
Query: 238 QTEDEVTPLKKKLDEFGTFLAKVIAGICVLVWIVNIGHFRDPSHGG-FLRGAIHYFKIAV 296
TE + TPL++KLDEFG L+KVI+ ICV VW++NIGHF DP HGG ++RGAI+YFKIAV
Sbjct: 242 ATEQDKTPLQQKLDEFGEQLSKVISLICVAVWLINIGHFNDPVHGGSWIRGAIYYFKIAV 301
Query: 297 ALAVAAIPEGLPAVVTTCLALGTKRMARLNAIVRSLPSVETLGCTTVICSDKTGTLTTNM 356
ALAVAAIPEGLPAV+TTCLALGT+RMA+ NAIVRSLPSVETLGCT+VICSDKTGTLTTN
Sbjct: 302 ALAVAAIPEGLPAVITTCLALGTRRMAKKNAIVRSLPSVETLGCTSVICSDKTGTLTTNQ 361
Query: 357 MSVAKICVVHSVQQGPI-IAEYGVTGTTYAPEGVVFDSSGIQLEFPAQLPCLLHIARCSA 415
MSV K+ ++ V + E+ +TG+TYAPEG V + + Q L+ +A A
Sbjct: 362 MSVCKMFIIDKVDGDFCSLNEFSITGSTYAPEGEVLKND--KPIRSGQFDGLVELATICA 419
Query: 416 LCNESVLQYNPDKGNYEKIGEATEVALRVLAEKVGLPGFDSMPSALNMLSKHERASYCNH 475
LCN+S L +N KG YEK+GEATE AL L EK+ + + + LSK ERA+ CN
Sbjct: 420 LCNDSSLDFNETKGVYEKVGEATETALTTLVEKMNV-----FNTEVRNLSKVERANACNS 474
Query: 476 HWEIEFKKVSILEFSRDRKMMSVLCSHKQMC------VMFSKGAPESVLSRCTNILCNDN 529
KK LEFSRDRK MSV CS + MF KGAPE V+ RC +
Sbjct: 475 VIRQLMKKEFTLEFSRDRKSMSVYCSPAKSSRAAVGNKMFVKGAPEGVIDRCNYVRVGTT 534
Query: 530 GFIVPMTANIRAELESRLNSLA-GKEALRCLALALKQMPINRQTLSYDD-------EKDL 581
VPMT ++ ++ S + G++ LRCLALA + P R+ + DD E DL
Sbjct: 535 R--VPMTGPVKEKILSVIKEWGTGRDTLRCLALATRDTPPKREEMVLDDSSRFMEYETDL 592
Query: 582 TFIGLVGMLDPPREEVKNAMLSCMTAGIRVIVVTGDNKSTAESICHKIGAFDHLVDFVGR 641
TF+G+VGMLDPPR+EV ++ C AGIRVI++TGDNK TA +IC +IG F + R
Sbjct: 593 TFVGVVGMLDPPRKEVMGSIQLCRDAGIRVIMITGDNKGTAIAICRRIGIFGENEEVADR 652
Query: 642 SYTASEFEELPAMQQTVALQHMALFTRVEPSHKRMLVEALQNQNEVVAMTGDGVNDAPAL 701
+YT EF++LP +Q A + F RVEPSHK +VE LQ+ +E+ AMTGDGVNDAPAL
Sbjct: 653 AYTGREFDDLPLAEQREACRRACCFARVEPSHKSKIVEYLQSYDEITAMTGDGVNDAPAL 712
Query: 702 KKADIGIAMGSGTAVAKSASDMVLADDNFATIVAAVAEGRAIYNNTKQFIRYMISSNIGE 761
KKA+IGIAMGSGTAVAK+AS+MVLADDNF+TIVAAV EGRAIYNN KQFIRY+ISSN+GE
Sbjct: 713 KKAEIGIAMGSGTAVAKTASEMVLADDNFSTIVAAVEEGRAIYNNMKQFIRYLISSNVGE 772
Query: 762 VVCIFVAAVLGIPDTLAPVSLISVNI 787
VVCIF+ A LG+P+ L PV L+ VN+
Sbjct: 773 VVCIFLTAALGLPEALIPVQLLWVNL 798
>pdb|1KJU|A Chain A, Ca2+-Atpase In The E2 State
pdb|1IWO|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase In The Absence Of
Ca2+
pdb|1IWO|B Chain B, Crystal Structure Of The Sr Ca2+-Atpase In The Absence Of
Ca2+
pdb|1SU4|A Chain A, Crystal Structure Of Calcium Atpase With Two Bound Calcium
Ions
pdb|1T5S|A Chain A, Structure Of The (sr)ca2+-atpase Ca2-e1-amppcp Form
pdb|1T5T|A Chain A, Structure Of The (Sr)ca2+-Atpase Ca2-E1-Adp:alf4- Form
pdb|1VFP|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Amppcp
pdb|1VFP|B Chain B, Crystal Structure Of The Sr Ca2+-Atpase With Bound Amppcp
pdb|1WPG|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1WPG|B Chain B, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1WPG|C Chain C, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1WPG|D Chain D, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1XP5|A Chain A, Structure Of The (Sr)ca2+-Atpase E2-Alf4- Form
pdb|2AGV|A Chain A, Crystal Structure Of The Sr Ca2+-atpase With Bhq And Tg
pdb|2AGV|B Chain B, Crystal Structure Of The Sr Ca2+-atpase With Bhq And Tg
pdb|2BY4|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With The
Thapsigargin Derivative Boc-12adt.
pdb|2C88|A Chain A, Crystal Structure Of (Sr) Calcium-Atpase E2(Tg):amppcp
Form
pdb|2C8K|A Chain A, Crystal Structure Of (Sr) Calcium-Atpase E2(Tg) With
Partially Occupied Amppcp Site
pdb|2C8L|A Chain A, Crystal Structure Of (Sr) Calcium-Atpase E2(Tg) Form
pdb|2C9M|A Chain A, Structure Of (Sr) Calcium-Atpase In The Ca2e1 State Solved
In A P1 Crystal Form.
pdb|2C9M|B Chain B, Structure Of (Sr) Calcium-Atpase In The Ca2e1 State Solved
In A P1 Crystal Form.
pdb|2O9J|A Chain A, Crystal Structure Of Calcium Atpase With Bound Magnesium
Fluoride And Cyclopiazonic Acid
pdb|2OA0|A Chain A, Crystal Structure Of Calcium Atpase With Bound Adp And
Cyclopiazonic Acid
pdb|3B9B|A Chain A, Structure Of The E2 Beryllium Fluoride Complex Of The
Serca Ca2+-Atpase
pdb|3B9R|A Chain A, Serca Ca2+-Atpase E2 Aluminium Fluoride Complex Without
Thapsigargin
pdb|3B9R|B Chain B, Serca Ca2+-Atpase E2 Aluminium Fluoride Complex Without
Thapsigargin
pdb|2EAS|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Cpa
pdb|2EAU|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Cpa In
The Presence Of Curcumin
pdb|3FGO|A Chain A, Crystal Structure Of The E2 Magnesium Fluoride Complex Of
The (Sr) Ca2+-Atpase With Bound Cpa And Amppcp
pdb|3FGO|B Chain B, Crystal Structure Of The E2 Magnesium Fluoride Complex Of
The (Sr) Ca2+-Atpase With Bound Cpa And Amppcp
pdb|3FPB|A Chain A, The Structure Of Sarcoplasmic Reticulum Ca2+-Atpase Bound
To Cyclopiazonic Acid With Atp
pdb|3FPS|A Chain A, The Structure Of Sarcoplasmic Reticulum Ca2+-Atpase Bound
To Cyclopiazonic And Adp
pdb|3NAL|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With The
Thapsigargin Derivative Dtb
pdb|3NAM|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With The
Thapsigargin Derivative Dotg
pdb|3NAN|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With A
Thapsigargin Derivative Boc-(Phi)tg
pdb|3N5K|A Chain A, Structure Of The (sr)ca2+-atpase E2-alf4- Form
pdb|3N5K|B Chain B, Structure Of The (sr)ca2+-atpase E2-alf4- Form
pdb|3N8G|A Chain A, Structure Of The (sr)ca2+-atpase Ca2-e1-caamppcp Form
pdb|2YFY|A Chain A, Serca In The Hne2 State Complexed With Debutanoyl
Thapsigargin
Length = 994
Score = 771 bits (1990), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 428/806 (53%), Positives = 539/806 (66%), Gaps = 28/806 (3%)
Query: 1 MEDAYARSVVEVLDFFGVDPTKGLTDSQVARHVRIYGKNVLPQEKRTAFWKLVLKQFDDL 60
ME A+++S E L +FGV T GLT QV RH+ YG N LP E+ + W+LV++QF+DL
Sbjct: 1 MEAAHSKSTEECLAYFGVSETTGLTPDQVKRHLEKYGHNELPAEEGKSLWELVIEQFEDL 60
Query: 61 LVKILIAAAVISFFLALIN-GETGLTAFLEPSXXXXXXXXXXXXXXXTETNAEKALEELR 119
LV+IL+ AA ISF LA GE +TAF+EP E NAE A+E L+
Sbjct: 61 LVRILLLAACISFVLAWFEEGEETITAFVEPFVILLILIANAIVGVWQERNAENAIEALK 120
Query: 120 AYQADIATVLRNGCFSI--LPAAELVPGDIVEVNVGCKIPADMRMIEMLSNQLRVDQAIL 177
Y+ ++ V R S+ + A ++VPGDIVEV VG K+PAD+R++ + S LRVDQ+IL
Sbjct: 121 EYEPEMGKVYRADRKSVQRIKARDIVPGDIVEVAVGDKVPADIRILSIKSTTLRVDQSIL 180
Query: 178 TGESCSVEKELDSIIATNAVYQDKTNILFSGTXXXXXXXXXXXXXXXXNTAMGSIRDSML 237
TGES SV K + + AV QDK N+LFSGT +T +G IRD M
Sbjct: 181 TGESVSVIKHTEPVPDPRAVNQDKKNMLFSGTNIAAGKALGIVATTGVSTEIGKIRDQMA 240
Query: 238 QTEDEVTPLKKKLDEFGTFLAKVIAGICVLVWIVNIGHFRDPSHGG-FLRGAIHYFKIAV 296
TE + TPL++KLDEFG L+KVI+ ICV VW++NIGHF DP HGG ++RGAI+YFKIAV
Sbjct: 241 ATEQDKTPLQQKLDEFGEQLSKVISLICVAVWLINIGHFNDPVHGGSWIRGAIYYFKIAV 300
Query: 297 ALAVAAIPEGLPAVVTTCLALGTKRMARLNAIVRSLPSVETLGCTTVICSDKTGTLTTNM 356
ALAVAAIPEGLPAV+TTCLALGT+RMA+ NAIVRSLPSVETLGCT+VICSDKTGTLTTN
Sbjct: 301 ALAVAAIPEGLPAVITTCLALGTRRMAKKNAIVRSLPSVETLGCTSVICSDKTGTLTTNQ 360
Query: 357 MSVAKICVVHSVQQGPI-IAEYGVTGTTYAPEGVVFDSSGIQLEFPAQLPCLLHIARCSA 415
MSV K+ ++ V + E+ +TG+TYAPEG V + + Q L+ +A A
Sbjct: 361 MSVCKMFIIDKVDGDFCSLNEFSITGSTYAPEGEVLKND--KPIRSGQFDGLVELATICA 418
Query: 416 LCNESVLQYNPDKGNYEKIGEATEVALRVLAEKVGLPGFDSMPSALNMLSKHERASYCNH 475
LCN+S L +N KG YEK+GEATE AL L EK+ + + + LSK ERA+ CN
Sbjct: 419 LCNDSSLDFNETKGVYEKVGEATETALTTLVEKMNV-----FNTEVRNLSKVERANACNS 473
Query: 476 HWEIEFKKVSILEFSRDRKMMSVLCSHKQMC------VMFSKGAPESVLSRCTNILCNDN 529
KK LEFSRDRK MSV CS + MF KGAPE V+ RC +
Sbjct: 474 VIRQLMKKEFTLEFSRDRKSMSVYCSPAKSSRAAVGNKMFVKGAPEGVIDRCNYVRVGTT 533
Query: 530 GFIVPMTANIRAELESRLNSLA-GKEALRCLALALKQMPINRQTLSYDD-------EKDL 581
VPMT ++ ++ S + G++ LRCLALA + P R+ + DD E DL
Sbjct: 534 R--VPMTGPVKEKILSVIKEWGTGRDTLRCLALATRDTPPKREEMVLDDSSRFMEYETDL 591
Query: 582 TFIGLVGMLDPPREEVKNAMLSCMTAGIRVIVVTGDNKSTAESICHKIGAFDHLVDFVGR 641
TF+G+VGMLDPPR+EV ++ C AGIRVI++TGDNK TA +IC +IG F + R
Sbjct: 592 TFVGVVGMLDPPRKEVMGSIQLCRDAGIRVIMITGDNKGTAIAICRRIGIFGENEEVADR 651
Query: 642 SYTASEFEELPAMQQTVALQHMALFTRVEPSHKRMLVEALQNQNEVVAMTGDGVNDAPAL 701
+YT EF++LP +Q A + F RVEPSHK +VE LQ+ +E+ AMTGDGVNDAPAL
Sbjct: 652 AYTGREFDDLPLAEQREACRRACCFARVEPSHKSKIVEYLQSYDEITAMTGDGVNDAPAL 711
Query: 702 KKADIGIAMGSGTAVAKSASDMVLADDNFATIVAAVAEGRAIYNNTKQFIRYMISSNIGE 761
KKA+IGIAMGSGTAVAK+AS+MVLADDNF+TIVAAV EGRAIYNN KQFIRY+ISSN+GE
Sbjct: 712 KKAEIGIAMGSGTAVAKTASEMVLADDNFSTIVAAVEEGRAIYNNMKQFIRYLISSNVGE 771
Query: 762 VVCIFVAAVLGIPDTLAPVSLISVNI 787
VVCIF+ A LG+P+ L PV L+ VN+
Sbjct: 772 VVCIFLTAALGLPEALIPVQLLWVNL 797
>pdb|3BA6|A Chain A, Structure Of The Ca2e1p Phosphoenzyme Intermediate Of The
Serca Ca2+-Atpase
Length = 994
Score = 768 bits (1983), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 427/806 (52%), Positives = 538/806 (66%), Gaps = 28/806 (3%)
Query: 1 MEDAYARSVVEVLDFFGVDPTKGLTDSQVARHVRIYGKNVLPQEKRTAFWKLVLKQFDDL 60
ME A+++S E L +FGV T GLT QV RH+ YG N LP E+ + W+LV++QF+DL
Sbjct: 1 MEAAHSKSTEECLAYFGVSETTGLTPDQVKRHLEKYGHNELPAEEGKSLWELVIEQFEDL 60
Query: 61 LVKILIAAAVISFFLALIN-GETGLTAFLEPSXXXXXXXXXXXXXXXTETNAEKALEELR 119
LV+IL+ AA ISF LA GE +TAF+EP E NAE A+E L+
Sbjct: 61 LVRILLLAACISFVLAWFEEGEETITAFVEPFVILLILIANAIVGVWQERNAENAIEALK 120
Query: 120 AYQADIATVLRNGCFSI--LPAAELVPGDIVEVNVGCKIPADMRMIEMLSNQLRVDQAIL 177
Y+ ++ V R S+ + A ++VPGDIVEV VG K+PAD+R++ + S LRVDQ+IL
Sbjct: 121 EYEPEMGKVYRADRKSVQRIKARDIVPGDIVEVAVGDKVPADIRILSIKSTTLRVDQSIL 180
Query: 178 TGESCSVEKELDSIIATNAVYQDKTNILFSGTXXXXXXXXXXXXXXXXNTAMGSIRDSML 237
TGES SV K + + AV QDK N+LFSGT +T +G IRD M
Sbjct: 181 TGESVSVIKHTEPVPDPRAVNQDKKNMLFSGTNIAAGKALGIVATTGVSTEIGKIRDQMA 240
Query: 238 QTEDEVTPLKKKLDEFGTFLAKVIAGICVLVWIVNIGHFRDPSHGG-FLRGAIHYFKIAV 296
TE + TPL++KLDEFG L+KVI+ ICV VW++NIGHF DP HGG ++RGAI+YFKIAV
Sbjct: 241 ATEQDKTPLQQKLDEFGEQLSKVISLICVAVWLINIGHFNDPVHGGSWIRGAIYYFKIAV 300
Query: 297 ALAVAAIPEGLPAVVTTCLALGTKRMARLNAIVRSLPSVETLGCTTVICSDKTGTLTTNM 356
ALAVAAIPEGLPAV+TTCLALGT+RMA+ NAIVRSLPSVETLGCT+VICS KTGTLTTN
Sbjct: 301 ALAVAAIPEGLPAVITTCLALGTRRMAKKNAIVRSLPSVETLGCTSVICSXKTGTLTTNQ 360
Query: 357 MSVAKICVVHSVQQGPI-IAEYGVTGTTYAPEGVVFDSSGIQLEFPAQLPCLLHIARCSA 415
MSV K+ ++ V + E+ +TG+TYAPEG V + + Q L+ +A A
Sbjct: 361 MSVCKMFIIDKVDGDFCSLNEFSITGSTYAPEGEVLKND--KPIRSGQFDGLVELATICA 418
Query: 416 LCNESVLQYNPDKGNYEKIGEATEVALRVLAEKVGLPGFDSMPSALNMLSKHERASYCNH 475
LCN+S L +N KG YEK+GEATE AL L EK+ + + + LSK ERA+ CN
Sbjct: 419 LCNDSSLDFNETKGVYEKVGEATETALTTLVEKMNV-----FNTEVRNLSKVERANACNS 473
Query: 476 HWEIEFKKVSILEFSRDRKMMSVLCSHKQMC------VMFSKGAPESVLSRCTNILCNDN 529
KK LEFSRDRK MSV CS + MF KGAPE V+ RC +
Sbjct: 474 VIRQLMKKEFTLEFSRDRKSMSVYCSPAKSSRAAVGNKMFVKGAPEGVIDRCNYVRVGTT 533
Query: 530 GFIVPMTANIRAELESRLNSLA-GKEALRCLALALKQMPINRQTLSYDD-------EKDL 581
VPMT ++ ++ S + G++ LRCLALA + P R+ + DD E DL
Sbjct: 534 R--VPMTGPVKEKILSVIKEWGTGRDTLRCLALATRDTPPKREEMVLDDSSRFMEYETDL 591
Query: 582 TFIGLVGMLDPPREEVKNAMLSCMTAGIRVIVVTGDNKSTAESICHKIGAFDHLVDFVGR 641
TF+G+VGMLDPPR+EV ++ C AGIRVI++TGDNK TA +IC +IG F + R
Sbjct: 592 TFVGVVGMLDPPRKEVMGSIQLCRDAGIRVIMITGDNKGTAIAICRRIGIFGENEEVADR 651
Query: 642 SYTASEFEELPAMQQTVALQHMALFTRVEPSHKRMLVEALQNQNEVVAMTGDGVNDAPAL 701
+YT EF++LP +Q A + F RVEPSHK +VE LQ+ +E+ AMTGDGVNDAPAL
Sbjct: 652 AYTGREFDDLPLAEQREACRRACCFARVEPSHKSKIVEYLQSYDEITAMTGDGVNDAPAL 711
Query: 702 KKADIGIAMGSGTAVAKSASDMVLADDNFATIVAAVAEGRAIYNNTKQFIRYMISSNIGE 761
KKA+IGIAMGSGTAVAK+AS+MVLADDNF+TIVAAV EGRAIYNN KQFIRY+ISSN+GE
Sbjct: 712 KKAEIGIAMGSGTAVAKTASEMVLADDNFSTIVAAVEEGRAIYNNMKQFIRYLISSNVGE 771
Query: 762 VVCIFVAAVLGIPDTLAPVSLISVNI 787
VVCIF+ A LG+P+ L PV L+ VN+
Sbjct: 772 VVCIFLTAALGLPEALIPVQLLWVNL 797
>pdb|3B8E|A Chain A, Crystal Structure Of The Sodium-Potassium Pump
pdb|3B8E|C Chain C, Crystal Structure Of The Sodium-Potassium Pump
pdb|3KDP|A Chain A, Crystal Structure Of The Sodium-potassium Pump
pdb|3KDP|C Chain C, Crystal Structure Of The Sodium-potassium Pump
Length = 998
Score = 296 bits (757), Expect = 4e-80, Method: Compositional matrix adjust.
Identities = 254/832 (30%), Positives = 382/832 (45%), Gaps = 108/832 (12%)
Query: 3 DAYARSVVEVLDFFGVDPTKGLTDSQVARHVRIYGKNVLPQEKRTAFWKLVLKQFDDLLV 62
D + S+ E+ +G D ++GLT ++ A + G N L T W +Q
Sbjct: 17 DDHKLSLDELHRKYGTDLSRGLTPARAAEILARDGPNALTPPPTTPEWVKFCRQLFGGFS 76
Query: 63 KILIAAAVISFFLALINGETGLTAFLEPSXXXXXXXXXXXX--------XXXTETNAEKA 114
+L A++ F I T EP E + K
Sbjct: 77 MLLWIGAILCFLAYGIQAATEE----EPQNDNLYLGVVLSAVVIITGCFSYYQEAKSSKI 132
Query: 115 LEELRAYQADIATVLRNGCFSILPAAELVPGDIVEVNVGCKIPADMRMIEMLSNQLRVDQ 174
+E + A V+RNG + A E+V GD+VEV G +IPAD+R+I +N +VD
Sbjct: 133 MESFKNMVPQQALVIRNGEKMSINAEEVVVGDLVEVKGGDRIPADLRIIS--ANGCKVDN 190
Query: 175 AILTGESCSVEKELDSIIATNAVYQDKTNILFSGTXXXXXXXXXXXXXXXXNTAMGSIRD 234
+ LTGES E + S TN + NI F T T MG I
Sbjct: 191 SSLTGES---EPQTRSPDFTNENPLETRNIAFFSTNCVEGTARGIVVYTGDRTVMGRIAT 247
Query: 235 SMLQTEDEVTPLKKKLDEFGTFLAKVIAGICVLVWIVNIGHFRDPSHGGFLRGAIHYFKI 294
E TP+ +++ F +I G+ V + + F L + Y +
Sbjct: 248 LASGLEGGQTPIAAEIEHF----IHIITGVAVFL---GVSFF-------ILSLILEYTWL 293
Query: 295 A-----VALAVAAIPEGLPAVVTTCLALGTKRMARLNAIVRSLPSVETLGCTTVICSDKT 349
+ + VA +PEGL A VT CL L KRMAR N +V++L +VETLG T+ ICSDKT
Sbjct: 294 EAVIFLIGIIVANVPEGLLATVTVCLTLTAKRMARKNCLVKNLEAVETLGSTSTICSDKT 353
Query: 350 GTLTTNMMSVAKICVVHSVQQGPIIAEYGVTGTTYAPEGVVFDSSGIQLEFPAQLPCLLH 409
GTLT N M+VA + + + + TT GV FD + L
Sbjct: 354 GTLTQNRMTVAHMWSDNQIHEA---------DTTENQSGVSFDKTS---------ATWLA 395
Query: 410 IARCSALCNESVLQYNPDKGNYEK---IGEATEVALRVLAEKVGLPGFDSMPSALNMLSK 466
++R + LCN +V Q N + K G+A+E AL E S M +
Sbjct: 396 LSRIAGLCNRAVFQANQENLPILKRAVAGDASESALLKCIELC-------CGSVKEMRER 448
Query: 467 HERASYCNHHWEIEFKKVSILEFSRDRKMMSVLCSHKQMCVMFSKGAPESVLSRCTNILC 526
+ + EI F + + S + + H ++ KGAPE +L RC++IL
Sbjct: 449 YTKIV------EIPFNSTNKYQLSIHKNPNTAEPRH----LLVMKGAPERILDRCSSILI 498
Query: 527 NDNGFIVPMTANIRAELES---RLNSLAGKEALRC-LALALKQMPINRQTLSYDDEK--- 579
+G P+ ++ ++ L L + C L L +Q P Q DD
Sbjct: 499 --HGKEQPLDEELKDAFQNAYLELGGLGERVLGFCHLFLPDEQFPEGFQ-FDTDDVNFPL 555
Query: 580 -DLTFIGLVGMLDPPREEVKNAMLSCMTAGIRVIVVTGDNKSTAESICHKIGAF----DH 634
+L F+GL+ M+DPPR V +A+ C +AGI+VI+VTGD+ TA++I +G +
Sbjct: 556 DNLCFVGLISMIDPPRAAVPDAVGKCRSAGIKVIMVTGDHPITAKAIAKGVGIISEGNET 615
Query: 635 LVDFVGR----------------SYTASEFEELPAMQQTVALQHMA--LFTRVEPSHKRM 676
+ D R S+ +++ + Q L++ +F R P K +
Sbjct: 616 VEDIAARLNIPVSQVNPRDAKACVVHGSDLKDMTSEQLDDILKYHTEIVFARTSPQQKLI 675
Query: 677 LVEALQNQNEVVAMTGDGVNDAPALKKADIGIAMG-SGTAVAKSASDMVLADDNFATIVA 735
+VE Q Q +VA+TGDGVND+PA KKADIG+AMG +G+ V+K A+DM+L DDNFA+IV
Sbjct: 676 IVEGCQRQGAIVAVTGDGVNDSPASKKADIGVAMGIAGSDVSKQAADMILLDDNFASIVT 735
Query: 736 AVAEGRAIYNNTKQFIRYMISSNIGEVVCIFVAAVLGIPDTLAPVSLISVNI 787
V EGR I++N K+ I Y ++SNI E+ + + IP L V+++ +++
Sbjct: 736 GVEEGRLIFDNLKKSIAYTLTSNIPEITPFLIFIIANIPLPLGTVTILCIDL 787
>pdb|3N23|A Chain A, Crystal Structure Of The High Affinity Complex Between
Ouabain And The E2p Form Of The Sodium-Potassium Pump
pdb|3N23|C Chain C, Crystal Structure Of The High Affinity Complex Between
Ouabain And The E2p Form Of The Sodium-Potassium Pump
pdb|3N2F|A Chain A, Crystal Structure Of The Sodium-Potassium Pump
pdb|3N2F|C Chain C, Crystal Structure Of The Sodium-Potassium Pump
Length = 992
Score = 293 bits (749), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 253/832 (30%), Positives = 381/832 (45%), Gaps = 108/832 (12%)
Query: 3 DAYARSVVEVLDFFGVDPTKGLTDSQVARHVRIYGKNVLPQEKRTAFWKLVLKQFDDLLV 62
D + S+ E+ +G D ++GLT ++ A + G N L T W +Q
Sbjct: 11 DDHKLSLDELHRKYGTDLSRGLTPARAAEILARDGPNALTPPPTTPEWVKFCRQLFGGFS 70
Query: 63 KILIAAAVISFFLALINGETGLTAFLEPSXXXXXXXXXXXX--------XXXTETNAEKA 114
+L A++ F I T EP E + K
Sbjct: 71 MLLWIGAILCFLAYGIQAATEE----EPQNDNLYLGVVLSAVVIITGCFSYYQEAKSSKI 126
Query: 115 LEELRAYQADIATVLRNGCFSILPAAELVPGDIVEVNVGCKIPADMRMIEMLSNQLRVDQ 174
+E + A V+RNG + A E+V GD+VEV G +IPAD+R+I +N +VD
Sbjct: 127 MESFKNMVPQQALVIRNGEKMSINAEEVVVGDLVEVKGGDRIPADLRIIS--ANGCKVDN 184
Query: 175 AILTGESCSVEKELDSIIATNAVYQDKTNILFSGTXXXXXXXXXXXXXXXXNTAMGSIRD 234
+ LTGES E + S TN + NI F T T MG I
Sbjct: 185 SSLTGES---EPQTRSPDFTNENPLETRNIAFFSTNCVEGTARGIVVYTGDRTVMGRIAT 241
Query: 235 SMLQTEDEVTPLKKKLDEFGTFLAKVIAGICVLVWIVNIGHFRDPSHGGFLRGAIHYFKI 294
E TP+ +++ F +I G+ V + + F L + Y +
Sbjct: 242 LASGLEGGQTPIAAEIEHF----IHIITGVAVFL---GVSFF-------ILSLILEYTWL 287
Query: 295 A-----VALAVAAIPEGLPAVVTTCLALGTKRMARLNAIVRSLPSVETLGCTTVICSDKT 349
+ + VA +PEGL A VT CL L KRMAR N +V++L +VETLG T+ ICS KT
Sbjct: 288 EAVIFLIGIIVANVPEGLLATVTVCLTLTAKRMARKNCLVKNLEAVETLGSTSTICSXKT 347
Query: 350 GTLTTNMMSVAKICVVHSVQQGPIIAEYGVTGTTYAPEGVVFDSSGIQLEFPAQLPCLLH 409
GTLT N M+VA + + + + TT GV FD + L
Sbjct: 348 GTLTQNRMTVAHMWSDNQIHEA---------DTTENQSGVSFDKTS---------ATWLA 389
Query: 410 IARCSALCNESVLQYNPDKGNYEK---IGEATEVALRVLAEKVGLPGFDSMPSALNMLSK 466
++R + LCN +V Q N + K G+A+E AL E S M +
Sbjct: 390 LSRIAGLCNRAVFQANQENLPILKRAVAGDASESALLKCIELC-------CGSVKEMRER 442
Query: 467 HERASYCNHHWEIEFKKVSILEFSRDRKMMSVLCSHKQMCVMFSKGAPESVLSRCTNILC 526
+ + EI F + + S + + H ++ KGAPE +L RC++IL
Sbjct: 443 YTKIV------EIPFNSTNKYQLSIHKNPNTAEPRH----LLVMKGAPERILDRCSSILI 492
Query: 527 NDNGFIVPMTANIRAELES---RLNSLAGKEALRC-LALALKQMPINRQTLSYDDEK--- 579
+G P+ ++ ++ L L + C L L +Q P Q DD
Sbjct: 493 --HGKEQPLDEELKDAFQNAYLELGGLGERVLGFCHLFLPDEQFPEGFQ-FDTDDVNFPL 549
Query: 580 -DLTFIGLVGMLDPPREEVKNAMLSCMTAGIRVIVVTGDNKSTAESICHKIGAF----DH 634
+L F+GL+ M+DPPR V +A+ C +AGI+VI+VTGD+ TA++I +G +
Sbjct: 550 DNLCFVGLISMIDPPRAAVPDAVGKCRSAGIKVIMVTGDHPITAKAIAKGVGIISEGNET 609
Query: 635 LVDFVGR----------------SYTASEFEELPAMQQTVALQHMA--LFTRVEPSHKRM 676
+ D R S+ +++ + Q L++ +F R P K +
Sbjct: 610 VEDIAARLNIPVSQVNPRDAKACVVHGSDLKDMTSEQLDDILKYHTEIVFARTSPQQKLI 669
Query: 677 LVEALQNQNEVVAMTGDGVNDAPALKKADIGIAMG-SGTAVAKSASDMVLADDNFATIVA 735
+VE Q Q +VA+TGDGVND+PA KKADIG+AMG +G+ V+K A+DM+L DDNFA+IV
Sbjct: 670 IVEGCQRQGAIVAVTGDGVNDSPASKKADIGVAMGIAGSDVSKQAADMILLDDNFASIVT 729
Query: 736 AVAEGRAIYNNTKQFIRYMISSNIGEVVCIFVAAVLGIPDTLAPVSLISVNI 787
V EGR I++N K+ I Y ++SNI E+ + + IP L V+++ +++
Sbjct: 730 GVEEGRLIFDNLKKSIAYTLTSNIPEITPFLIFIIANIPLPLGTVTILCIDL 781
>pdb|2ZXE|A Chain A, Crystal Structure Of The Sodium - Potassium Pump In The
E2.2k+.Pi State
pdb|3A3Y|A Chain A, Crystal Structure Of The Sodium-potassium Pump With Bound
Potassium And Ouabain
Length = 1028
Score = 286 bits (731), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 249/829 (30%), Positives = 379/829 (45%), Gaps = 102/829 (12%)
Query: 3 DAYARSVVEVLDFFGVDPTKGLTDSQVARHVRIYGKNVLPQEKRTAFWKLVLKQFDDLLV 62
D + S+ E+ + +G D T+GLT+++ + G N L T W +Q
Sbjct: 47 DDHKLSLDELHNKYGTDLTRGLTNARAKEILARDGPNSLTPPPTTPEWIKFCRQLFGGFS 106
Query: 63 KILIAAAVISFFLALINGETGLTAFLEPSXXXXXXXXXXXX--------XXXTETNAEKA 114
+L A++ F I T EP+ E + +
Sbjct: 107 ILLWIGAILCFLAYGIQAATED----EPANDNLYLGVVLSTVVIVTGCFSYYQEAKSSRI 162
Query: 115 LEELRAYQADIATVLRNGCFSILPAAELVPGDIVEVNVGCKIPADMRMIEMLSNQLRVDQ 174
++ + A V+R+G S + A +V GD+VEV G +IPAD+R+I ++ +VD
Sbjct: 163 MDSFKNMVPQQALVIRDGEKSTINAEFVVAGDLVEVKGGDRIPADLRIIS--AHGCKVDN 220
Query: 175 AILTGESCSVEKELDSIIATNAVYQDKTNILFSGTXXXXXXXXXXXXXXXXNTAMGSIRD 234
+ LTGES E + S ++ + NI F T T MG I
Sbjct: 221 SSLTGES---EPQTRSPEFSSENPLETRNIAFFSTNCVEGTARGVVVYTGDRTVMGRIAT 277
Query: 235 SMLQTEDEVTPLKKKLDEFGTFLA--KVIAGICVLVWIVNIGHFRDPSHGGFLRGAIHYF 292
E TP+ +++ F + V G+ + + +G+ +L I
Sbjct: 278 LASGLEVGRTPIAIEIEHFIHIITGVAVFLGVSFFILSLILGY-------SWLEAVI--- 327
Query: 293 KIAVALAVAAIPEGLPAVVTTCLALGTKRMARLNAIVRSLPSVETLGCTTVICSDKTGTL 352
+ + VA +PEGL A VT CL L KRMAR N +V++L +VETLG T+ ICSDKTGTL
Sbjct: 328 -FLIGIIVANVPEGLLATVTVCLTLTAKRMARKNCLVKNLEAVETLGSTSTICSDKTGTL 386
Query: 353 TTNMMSVAKICVVHSVQQGPIIAEYGVTGTTYAPEGVVFDSSGIQLEFPAQLPCLLHIAR 412
T N M+VA + + + + TT G FD + ++R
Sbjct: 387 TQNRMTVAHMWFDNQIHEA---------DTTENQSGAAFDKTSATWS---------ALSR 428
Query: 413 CSALCNESVLQYNPDKGNYEK---IGEATEVALRVLAEKVGLPGFDSMPSALNMLSKHER 469
+ALCN +V Q D K G+A+E AL E S M ++ +
Sbjct: 429 IAALCNRAVFQAGQDNVPILKRSVAGDASESALLKCIELC-------CGSVQGMRDRNPK 481
Query: 470 ASYCNHHWEIEFKKVSILEFSRDRKMMSVLCSHKQMCVMFSKGAPESVLSRCTNILCNDN 529
EI F + + S S + + VM KGAPE +L RC+ IL N
Sbjct: 482 IV------EIPFNSTNKYQLSIHENEKS--SESRYLLVM--KGAPERILDRCSTILLN-- 529
Query: 530 GFIVPMTANIRAELESRLNSLAGKEALRCLALALKQMPINRQTLSYD---DE-----KDL 581
G P+ +++ ++ L G R L +P ++ Y DE DL
Sbjct: 530 GAEEPLKEDMKEAFQNAYLELGGL-GERVLGFCHFALPEDKYNEGYPFDADEPNFPTTDL 588
Query: 582 TFIGLVGMLDPPREEVKNAMLSCMTAGIRVIVVTGDNKSTAESICHKIGAF----DHLVD 637
F+GL+ M+DPPR V +A+ C +AGI+VI+VTGD+ TA++I +G + + D
Sbjct: 589 CFVGLMAMIDPPRAAVPDAVGKCRSAGIKVIMVTGDHPITAKAIAKGVGIISEGNETIED 648
Query: 638 FVGR----------------SYTASEFEELPA--MQQTVALQHMALFTRVEPSHKRMLVE 679
R S+ ++L + + +F R P K ++VE
Sbjct: 649 IAARLNIPIGQVNPRDAKACVVHGSDLKDLSTEVLDDILHYHTEIVFARTSPQQKLIIVE 708
Query: 680 ALQNQNEVVAMTGDGVNDAPALKKADIGIAMG-SGTAVAKSASDMVLADDNFATIVAAVA 738
Q Q +VA+TGDGVND+PALKKADIG+AMG SG+ V+K A+DM+L DDNFA+IV V
Sbjct: 709 GCQRQGAIVAVTGDGVNDSPALKKADIGVAMGISGSDVSKQAADMILLDDNFASIVTGVE 768
Query: 739 EGRAIYNNTKQFIRYMISSNIGEVVCIFVAAVLGIPDTLAPVSLISVNI 787
EGR I++N K+ I Y ++SNI E+ V + +P L V+++ +++
Sbjct: 769 EGRLIFDNLKKSIAYTLTSNIPEITPFLVFIIGNVPLPLGTVTILCIDL 817
>pdb|3IXZ|A Chain A, Pig Gastric H+K+-Atpase Complexed With Aluminium Fluoride
pdb|2XZB|A Chain A, Pig Gastric H,K-Atpase With Bound Bef And Sch28080
pdb|2YN9|A Chain A, Cryo-em Structure Of Gastric H+,k+-atpase With Bound
Rubidium
Length = 1034
Score = 285 bits (728), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 254/830 (30%), Positives = 390/830 (46%), Gaps = 114/830 (13%)
Query: 8 SVVEVLDFFGVDPTKGLTDSQVARHVRIYGKNVL-PQEKRTAFWKLVLKQFDDLLVKILI 66
SV E+ + TKGL+ S A + G N L P + K + L + +
Sbjct: 57 SVAELEQKYQTSATKGLSASLAAELLLRDGPNALRPPRGTPEYVKFARQLAGGLQCLMWV 116
Query: 67 AAAVISFFLALINGETGLTA----FLEPSXXXXXXXX--XXXXXXXTETNAEKALEELRA 120
AAA+ A+ E LT +L + TN + + L
Sbjct: 117 AAAICLIAFAIQASEGDLTTDDNLYLALALIAVVVVTGCFGYYQEFKSTNIIASFKNLVP 176
Query: 121 YQADIATVLRNGCFSILPAAELVPGDIVEVNVGCKIPADMRMIEMLSNQLRVDQAILTGE 180
QA TV+R+G + A +LV GD+VE+ G ++PAD+R+++ + +VD + LTGE
Sbjct: 177 QQA---TVIRDGDKFQINADQLVVGDLVEMKGGDRVPADIRILQ--AQGRKVDNSSLTGE 231
Query: 181 SCSVEKELDSIIATNAVYQDKTNILFSGTXXXXXXXXXXXXXXXXNTAMGSIRDSMLQTE 240
S E + S T+ + NI F T T +G I E
Sbjct: 232 S---EPQTRSPECTHESPLETRNIAFFSTMCLEGTAQGLVVNTGDRTIIGRIASLASGVE 288
Query: 241 DEVTPLKKKLDEFGTFLAKVIAGICVLV----WIVN--IGHFRDPSHGGFLRGAIHYFKI 294
+E TP+ +++ F +IAG+ +L +IV IG+ FLR + +
Sbjct: 289 NEKTPIAIEIEHF----VDIIAGLAILFGATFFIVAMCIGY-------TFLRAMVFF--- 334
Query: 295 AVALAVAAIPEGLPAVVTTCLALGTKRMARLNAIVRSLPSVETLGCTTVICSDKTGTLTT 354
+A+ VA +PEGL A VT CL+L KR+A N +V++L +VETLG T+VICSDKTGTLT
Sbjct: 335 -MAIVVAYVPEGLLATVTVCLSLTAKRLASKNCVVKNLEAVETLGSTSVICSDKTGTLTQ 393
Query: 355 NMMSVAKICVVHSVQQGPIIAEYGVTGTTYAPEGVVFDSSGIQLEFPAQLPCLLHIARCS 414
N M+V+ + + + TT G FD S + R
Sbjct: 394 NRMTVSHLWFDNHIHSA---------DTTEDQSGQTFDQSSETWR---------ALCRVL 435
Query: 415 ALCNESVLQYNPDKGNYEK---IGEATEVALRVLAEKVGLPGFDSMPSALNMLSKHERAS 471
LCN + + D K IG+A+E AL +E ++ +A+ + +
Sbjct: 436 TLCNRAAFKSGQDAVPVPKRIVIGDASETALLKFSEL-------TLGNAMGYRERFPKVC 488
Query: 472 YCNHHWEIEFK-KVSILEFSRDRKMMSVLCSHKQMCVMFSKGAPESVLSRCTNILCNDNG 530
+ +F+ + LE RD + + V+ KGAPE VL RC++IL G
Sbjct: 489 EIPFNSTNKFQLSIHTLEDPRDPRHVLVM-----------KGAPERVLERCSSILI--KG 535
Query: 531 FIVPMTANIRAELESRLNSLAGKEALRCLALALKQMPINRQT----LSYDDE------KD 580
+P+ R ++ SL G L L Q+ ++ + ++D E
Sbjct: 536 QELPLDEQWREAFQTAYLSLGG---LGERVLGFCQLYLSEKDYPPGYAFDVEAMNFPTSG 592
Query: 581 LTFIGLVGMLDPPREEVKNAMLSCMTAGIRVIVVTGDNKSTAESICHKIGAFDH------ 634
L+F GLV M+DPPR V +A+L C TAGIRVI+VTGD+ TA++I +G
Sbjct: 593 LSFAGLVSMIDPPRATVPDAVLKCRTAGIRVIMVTGDHPITAKAIAASVGIISEGSETVE 652
Query: 635 --------LVDFVGRS------YTASEFEELPAMQQTVALQHMA--LFTRVEPSHKRMLV 678
VD V R + +++ + AL+ +F R P K ++V
Sbjct: 653 DIAARLRVPVDQVNRKDARACVINGMQLKDMDPSELVEALRTHPEMVFARTSPQQKLVIV 712
Query: 679 EALQNQNEVVAMTGDGVNDAPALKKADIGIAMG-SGTAVAKSASDMVLADDNFATIVAAV 737
E+ Q +VA+TGDGVND+PALKKADIG+AMG +G+ AK+A+DM+L DDNFA+IV V
Sbjct: 713 ESCQRLGAIVAVTGDGVNDSPALKKADIGVAMGIAGSDAAKNAADMILLDDNFASIVTGV 772
Query: 738 AEGRAIYNNTKQFIRYMISSNIGEVVCIFVAAVLGIPDTLAPVSLISVNI 787
+GR I++N K+ I Y ++ NI E+ + + +P L ++++ + +
Sbjct: 773 EQGRLIFDNLKKSIAYTLTKNIPELTPYLIYITVSVPLPLGCITILFIEL 822
>pdb|1MHS|A Chain A, Model Of Neurospora Crassa Proton Atpase
pdb|1MHS|B Chain B, Model Of Neurospora Crassa Proton Atpase
Length = 920
Score = 125 bits (315), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 101/347 (29%), Positives = 165/347 (47%), Gaps = 35/347 (10%)
Query: 14 DFFGVDPTKGLTDSQVARHVRIYGKNVLPQEKRTAFWKLVLKQFDDLLVKILIAAAVISF 73
D D GLT +V + R YG N + +EK F K L F + ++ AAV++
Sbjct: 78 DMLQTDTRVGLTSEEVVQRRRKYGLNQMKEEKENHFLKF-LGFFVGPIQFVMEGAAVLA- 135
Query: 74 FLALINGETGLTAFLEPSXXXXXXXXXXXXXXXTETNAEKALEELRAYQADIATVLRNGC 133
GL +++ E A ++EL+ A A VLR+G
Sbjct: 136 --------AGLEDWVDFGVICGLLLLNAVVGFVQEFQAGSIVDELKKTLALKAVVLRDGT 187
Query: 134 FSILPAAELVPGDIVEVNVGCKIPADMRMIEMLSNQLRVDQAILTGESCSVEKEL-DSII 192
+ A E+VPGDI++V G IPAD R++ L+VDQ+ LTGES +V+K D +
Sbjct: 188 LKEIEAPEVVPGDILQVEEGTIIPADGRIVTD-DAFLQVDQSALTGESLAVDKHKGDQVF 246
Query: 193 ATNAVYQDKTNILFSGTXXXXXXXXXXXXXXXXNTAMGSIRDSMLQTEDEVTPLKKKLDE 252
A++AV + + ++ + T NT +G + + L+
Sbjct: 247 ASSAVKRGEAFVVITATGD--------------NTFVGRAAALVNAASGGSGHFTEVLNG 292
Query: 253 FGTFLAKVIAGICVLVWIVNIGHFRDPSHGGFLRGAIHYFKIAVALAVAAIPEGLPAVVT 312
GT L ++ ++VW+ + + +P + + +A+ + +P GLPAVVT
Sbjct: 293 IGTILLILVIFTLLIVWVSSF-YRSNP--------IVQILEFTLAITIIGVPVGLPAVVT 343
Query: 313 TCLALGTKRMARLNAIVRSLPSVETLGCTTVICSDKTGTLTTNMMSV 359
T +A+G +A+ AIV+ L ++E+L ++CSDKTGTLT N +S+
Sbjct: 344 TTMAVGAAYLAKKKAIVQKLSAIESLAGVEILCSDKTGTLTKNKLSL 390
Score = 100 bits (249), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 81/313 (25%), Positives = 141/313 (45%), Gaps = 35/313 (11%)
Query: 447 EKVGLPGFDSMPSALNMLSKHERASYCNHHWEIEFKKVSILEFSRDRKMMSVLCSHKQMC 506
+K L P A ++LSK++ + F VS +K+++V+ S +
Sbjct: 423 DKAFLKSLKYYPRAKSVLSKYKVLQFH------PFDPVS-------KKVVAVVESPQGER 469
Query: 507 VMFSKGAPESVLSRCTNILCNDNGFIVPMTANIRAELESRLNSLAGKEALRCLALALKQM 566
+ KGAP VL D+ P+ + ++++ A + R L +A K+
Sbjct: 470 ITCVKGAPLFVLKTVEE----DH----PIPEEVDQAYKNKVAEFATR-GFRSLGVARKR- 519
Query: 567 PINRQTLSYDDEKDLTFIGLVGMLDPPREEVKNAMLSCMTAGIRVIVVTGDNKSTAESIC 626
E +G++ +DPPR + + T G+ + ++TGD A
Sbjct: 520 ----------GEGSWEILGIMPCMDPPRHDTYKTVCEAKTLGLSIKMLTGDAVGIARETS 569
Query: 627 HKIGAFDHLVDFVGRSYTASEFEELPAMQQTVALQHMALFTRVEPSHKRMLVEALQNQNE 686
++G ++ + ++P + ++ F V P HK +VE LQ +
Sbjct: 570 RQLGLGTNIYN--AERLGLGGGGDMPGSEVYDFVEAADGFAEVFPQHKYNVVEILQQRGY 627
Query: 687 VVAMTGDGVNDAPALKKADIGIAMGSGTAVAKSASDMVLADDNFATIVAAVAEGRAIYNN 746
+VAMTGDGVNDAP+LKKAD GIA+ + A+SA+D+V I+ A+ R I++
Sbjct: 628 LVAMTGDGVNDAPSLKKADTGIAVEGSSDAARSAADIVFLAPGLGAIIDALKTSRQIFHR 687
Query: 747 TKQFIRYMISSNI 759
++ Y I+ +I
Sbjct: 688 MYAYVVYRIALSI 700
>pdb|3B8C|A Chain A, Crystal Structure Of A Plasma Membrane Proton Pump
pdb|3B8C|B Chain B, Crystal Structure Of A Plasma Membrane Proton Pump
Length = 885
Score = 117 bits (294), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 81/268 (30%), Positives = 130/268 (48%), Gaps = 29/268 (10%)
Query: 510 SKGAPESVLSRCTNILCNDNGFIVPMTANIRAELESRLNSLAGKEA---LRCLALALKQM 566
SKGAPE +L A +L ++ S+ K A LR LA+A + +
Sbjct: 422 SKGAPEQILE----------------LAKASNDLSKKVLSIIDKYAERGLRSLAVARQVV 465
Query: 567 PINRQTLSYDDEKDLTFIGLVGMLDPPREEVKNAMLSCMTAGIRVIVVTGDNKSTAESIC 626
P + F+GL+ + DPPR + + + G+ V ++TGD + +
Sbjct: 466 P---EKTKESPGAPWEFVGLLPLFDPPRHDSAETIRRALNLGVNVKMITGDQLAIGKETG 522
Query: 627 HKIGAFDHLVD---FVGRSYTASEFEELPAMQQTVALQHMALFTRVEPSHKRMLVEALQN 683
++G ++ +G ++ + +P + ++ F V P HK +V+ LQ
Sbjct: 523 RRLGMGTNMYPSSALLG-THKDANLASIPVEE---LIEKADGFAGVFPEHKYEIVKKLQE 578
Query: 684 QNEVVAMTGDGVNDAPALKKADIGIAMGSGTAVAKSASDMVLADDNFATIVAAVAEGRAI 743
+ +V MTGDGVNDAPALKKADIGIA+ T A+ ASD+VL + + I++AV RAI
Sbjct: 579 RKHIVGMTGDGVNDAPALKKADIGIAVADATDAARGASDIVLTEPGLSVIISAVLTSRAI 638
Query: 744 YNNTKQFIRYMISSNIGEVVCIFVAAVL 771
+ K + Y +S I V + A++
Sbjct: 639 FQRMKNYTIYAVSITIRIVFGFMLIALI 666
Score = 95.5 bits (236), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 71/235 (30%), Positives = 114/235 (48%), Gaps = 26/235 (11%)
Query: 128 VLRNGCFSILPAAELVPGDIVEVNVGCKIPADMRMIEMLSNQLRVDQAILTGESCSVEKE 187
VLR+G +S AA LVPGDIV + +G IPAD R++E + L+VDQ+ LTGES V K
Sbjct: 134 VLRDGKWSEQEAAILVPGDIVSIKLGDIIPADARLLE--GDPLKVDQSALTGESLPVTKH 191
Query: 188 LDSIIATNAVYQDKTNILFSGTXXXXXXXXXXXXXXXXNTAMGSIRDSMLQTEDEVTPLK 247
+FSG+ +T G ++ + ++V +
Sbjct: 192 -------------PGQEVFSGSTCKQGEIEAVVIATGVHTFFGKAA-HLVDSTNQVGHFQ 237
Query: 248 KKLDEFGTF-LAKVIAGICVLVWIVNIGHFRDPSHGGFLRGAIHYFKIAVALAVAAIPEG 306
K L G F + + G+ + + ++ P R I + L + IP
Sbjct: 238 KVLTAIGNFCICSIAIGMVIEIIVMY------PIQRRKYRDGIDNL---LVLLIGGIPIA 288
Query: 307 LPAVVTTCLALGTKRMARLNAIVRSLPSVETLGCTTVICSDKTGTLTTNMMSVAK 361
+P V++ +A+G+ R+++ AI + + ++E + V+CSDKTGTLT N +SV K
Sbjct: 289 MPTVLSVTMAIGSHRLSQQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLSVDK 343
>pdb|3J09|A Chain A, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
pdb|3J09|B Chain B, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
Length = 723
Score = 84.3 bits (207), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 58/175 (33%), Positives = 87/175 (49%), Gaps = 32/175 (18%)
Query: 585 GLVGMLDPPREEVKNAMLSCMTAGIRVIVVTGDNKSTAESICHKIGAFDHLVDFVGRSYT 644
G++ + D +E K A+ GI+V ++TGDN +AE+I ++ +D V
Sbjct: 528 GIIAVSDTLKESAKPAVQELKRMGIKVGMITGDNWRSAEAISRELN-----LDLV----- 577
Query: 645 ASEFEELPAMQQTVALQHMALFTRVEPSHKRMLVEALQNQNEVVAMTGDGVNDAPALKKA 704
V P K V+ LQ + EVVA GDG+NDAPAL +A
Sbjct: 578 ---------------------IAEVLPHQKSEEVKKLQAK-EVVAFVGDGINDAPALAQA 615
Query: 705 DIGIAMGSGTAVAKSASDMVLADDNFATIVAAVAEGRAIYNNTKQFIRYMISSNI 759
D+GIA+GSG+ VA + D+VL D+ +VAA+ R + KQ I + + N+
Sbjct: 616 DLGIAVGSGSDVAVESGDIVLIRDDLRDVVAAIQLSRKTMSKIKQNIFWALIYNV 670
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 62/243 (25%), Positives = 101/243 (41%), Gaps = 28/243 (11%)
Query: 113 KALEELRAYQADIATVLRNGCFSILPAAELVPGDIVEVNVGCKIPADMRMIEMLSNQLRV 172
+A+++L QA A V+R+G +P E+ GDIV V G KIP D ++E + V
Sbjct: 200 EAIKKLVGLQAKTAVVIRDGKEIAVPVEEVAVGDIVIVRPGEKIPVDGVVVE---GESYV 256
Query: 173 DQAILTGESCSVEKELDSIIATNAVYQDKTNILFSGTXXXXXXXXXXXXXXXXNTAMGSI 232
D+++++GE V K K + +F T T + I
Sbjct: 257 DESMISGEPVPVLK-------------SKGDEVFGATINNTGVLKIRATRVGGETLLAQI 303
Query: 233 RDSMLQTEDEVTPLKKKLDEFGTFLAKVIAGICVLVWIVNIGHFRDPSHGGFLRGA--IH 290
+ P+++ D KV+A V +V I F + F+ A +
Sbjct: 304 VKLVEDAMGSKPPIQRLAD-------KVVAYFIPTVLLVAISAF---IYWYFIAHAPLLF 353
Query: 291 YFKIAVALAVAAIPEGLPAVVTTCLALGTKRMARLNAIVRSLPSVETLGCTTVICSDKTG 350
F +A+ V A P T L +G + A L ++++ ++E T + DKTG
Sbjct: 354 AFTTLIAVLVVACPCAFGLATPTALTVGMGKGAELGILIKNADALEVAEKVTAVIFDKTG 413
Query: 351 TLT 353
TLT
Sbjct: 414 TLT 416
>pdb|3J08|A Chain A, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
pdb|3J08|B Chain B, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
Length = 645
Score = 84.3 bits (207), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 58/175 (33%), Positives = 87/175 (49%), Gaps = 32/175 (18%)
Query: 585 GLVGMLDPPREEVKNAMLSCMTAGIRVIVVTGDNKSTAESICHKIGAFDHLVDFVGRSYT 644
G++ + D +E K A+ GI+V ++TGDN +AE+I ++ +D V
Sbjct: 450 GIIAVSDTLKESAKPAVQELKRMGIKVGMITGDNWRSAEAISRELN-----LDLV----- 499
Query: 645 ASEFEELPAMQQTVALQHMALFTRVEPSHKRMLVEALQNQNEVVAMTGDGVNDAPALKKA 704
V P K V+ LQ + EVVA GDG+NDAPAL +A
Sbjct: 500 ---------------------IAEVLPHQKSEEVKKLQAK-EVVAFVGDGINDAPALAQA 537
Query: 705 DIGIAMGSGTAVAKSASDMVLADDNFATIVAAVAEGRAIYNNTKQFIRYMISSNI 759
D+GIA+GSG+ VA + D+VL D+ +VAA+ R + KQ I + + N+
Sbjct: 538 DLGIAVGSGSDVAVESGDIVLIRDDLRDVVAAIQLSRKTMSKIKQNIFWALIYNV 592
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 62/243 (25%), Positives = 101/243 (41%), Gaps = 28/243 (11%)
Query: 113 KALEELRAYQADIATVLRNGCFSILPAAELVPGDIVEVNVGCKIPADMRMIEMLSNQLRV 172
+A+++L QA A V+R+G +P E+ GDIV V G KIP D ++E + V
Sbjct: 122 EAIKKLVGLQAKTAVVIRDGKEIAVPVEEVAVGDIVIVRPGEKIPVDGVVVE---GESYV 178
Query: 173 DQAILTGESCSVEKELDSIIATNAVYQDKTNILFSGTXXXXXXXXXXXXXXXXNTAMGSI 232
D+++++GE V K K + +F T T + I
Sbjct: 179 DESMISGEPVPVLK-------------SKGDEVFGATINNTGVLKIRATRVGGETLLAQI 225
Query: 233 RDSMLQTEDEVTPLKKKLDEFGTFLAKVIAGICVLVWIVNIGHFRDPSHGGFLRGA--IH 290
+ P+++ D KV+A V +V I F + F+ A +
Sbjct: 226 VKLVEDAMGSKPPIQRLAD-------KVVAYFIPTVLLVAISAF---IYWYFIAHAPLLF 275
Query: 291 YFKIAVALAVAAIPEGLPAVVTTCLALGTKRMARLNAIVRSLPSVETLGCTTVICSDKTG 350
F +A+ V A P T L +G + A L ++++ ++E T + DKTG
Sbjct: 276 AFTTLIAVLVVACPCAFGLATPTALTVGMGKGAELGILIKNADALEVAEKVTAVIFDKTG 335
Query: 351 TLT 353
TLT
Sbjct: 336 TLT 338
>pdb|3RFU|A Chain A, Crystal Structure Of A Copper-Transporting Pib-Type Atpase
pdb|3RFU|B Chain B, Crystal Structure Of A Copper-Transporting Pib-Type Atpase
pdb|3RFU|C Chain C, Crystal Structure Of A Copper-Transporting Pib-Type Atpase
pdb|3RFU|D Chain D, Crystal Structure Of A Copper-Transporting Pib-Type Atpase
Length = 736
Score = 82.4 bits (202), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 55/184 (29%), Positives = 87/184 (47%), Gaps = 42/184 (22%)
Query: 591 DPPREEVKNAMLSCMTAGIRVIVVTGDNKSTAESICHKIGAFDHLVDFVGRSYTASEFEE 650
DP + +L +GI ++++TGD+K TAE++ +G
Sbjct: 553 DPIKSSTPETILELQQSGIEIVMLTGDSKRTAEAVAGTLG-------------------- 592
Query: 651 LPAMQQTVALQHMALFTRVEPSHKRMLVEALQNQNEVVAMTGDGVNDAPALKKADIGIAM 710
+++ VA + P K +V L+++ +VAM GDGVNDAPAL KADIGIAM
Sbjct: 593 ---IKKVVA--------EIMPEDKSRIVSELKDKGLIVAMAGDGVNDAPALAKADIGIAM 641
Query: 711 GSGTAVAKSASDMVLADDNFATIVAAVAEGRAIYNNTKQFIRYMISSNIGEVVCIFVAAV 770
G+GT VA ++ + L + I A + +N +Q + + F+ V
Sbjct: 642 GTGTDVAIESAGVTLLHGDLRGIAKARRLSESTMSNIRQNLFFA-----------FIYNV 690
Query: 771 LGIP 774
LG+P
Sbjct: 691 LGVP 694
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 46/220 (20%), Positives = 89/220 (40%), Gaps = 25/220 (11%)
Query: 145 GDIVEVNVGCKIPADMRMIEMLSNQLRVDQAILTGESCSVEKELDSIIATNAVYQDKTNI 204
GD++ V G KIP D E+ + VD++++TGE V KE + + + Q + +
Sbjct: 247 GDLLRVRPGEKIPVDG---EVQEGRSFVDESMVTGEPIPVAKEASAKVIGATINQTGSFV 303
Query: 205 LFSGTXXXXXXXXXXXXXXXXNTAMGSIRDSMLQTEDEVTPLKKKLDEFGTFLAKVIAGI 264
+ +T + I + + P+++ D + + +
Sbjct: 304 M-------------KALHVGSDTMLARIVQMVSDAQRSRAPIQRLADTVSGWFVPAVILV 350
Query: 265 CVLVWIVNIGHFRDPSHGGFLRGAIHYFKIA-VALAVAAIPEGLPAVVTTCLALGTKRMA 323
VL +IV P A+ Y IA V++ + A P L + +G + A
Sbjct: 351 AVLSFIVWALLGPQP--------ALSYGLIAAVSVLIIACPCALGLATPMSIMVGVGKGA 402
Query: 324 RLNAIVRSLPSVETLGCTTVICSDKTGTLTTNMMSVAKIC 363
+ ++++ ++E + + DKTGTLT + +I
Sbjct: 403 QSGVLIKNAEALERMEKVNTLVVDKTGTLTEGHPKLTRIV 442
>pdb|3A1C|A Chain A, Crystal Structure Of The P- And N-Domains Of Copa, A
Copper- Transporting P-Type Atpase, Bound With Amppcp-Mg
pdb|3A1C|B Chain B, Crystal Structure Of The P- And N-Domains Of Copa, A
Copper- Transporting P-Type Atpase, Bound With Amppcp-Mg
pdb|3A1D|A Chain A, Crystal Structure Of The P- And N-domains Of Copa, A
Copper- Transporting P-type Atpase, Bound With Adp-mg
pdb|3A1D|B Chain B, Crystal Structure Of The P- And N-domains Of Copa, A
Copper- Transporting P-type Atpase, Bound With Adp-mg
Length = 287
Score = 78.6 bits (192), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 55/164 (33%), Positives = 81/164 (49%), Gaps = 32/164 (19%)
Query: 585 GLVGMLDPPREEVKNAMLSCMTAGIRVIVVTGDNKSTAESICHKIGAFDHLVDFVGRSYT 644
G++ + D +E K A+ GI+V ++TGDN +AE+I ++ +D V
Sbjct: 156 GIIAVSDTLKESAKPAVQELKRMGIKVGMITGDNWRSAEAISRELN-----LDLV----- 205
Query: 645 ASEFEELPAMQQTVALQHMALFTRVEPSHKRMLVEALQNQNEVVAMTGDGVNDAPALKKA 704
V P K V+ LQ + EVVA GDG+NDAPAL +A
Sbjct: 206 ---------------------IAEVLPHQKSEEVKKLQAK-EVVAFVGDGINDAPALAQA 243
Query: 705 DIGIAMGSGTAVAKSASDMVLADDNFATIVAAVAEGRAIYNNTK 748
D+GIA+GSG+ VA + D+VL D+ +VAA+ R + K
Sbjct: 244 DLGIAVGSGSDVAVESGDIVLIRDDLRDVVAAIQLSRKTMSKIK 287
>pdb|3A1E|A Chain A, Crystal Structure Of The P- And N-Domains Of His462gln
Mutant Copa, A Copper-Transporting P-Type Atpase, Bound
With Amppcp-Mg
pdb|3A1E|B Chain B, Crystal Structure Of The P- And N-Domains Of His462gln
Mutant Copa, A Copper-Transporting P-Type Atpase, Bound
With Amppcp-Mg
Length = 287
Score = 78.6 bits (192), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 55/164 (33%), Positives = 81/164 (49%), Gaps = 32/164 (19%)
Query: 585 GLVGMLDPPREEVKNAMLSCMTAGIRVIVVTGDNKSTAESICHKIGAFDHLVDFVGRSYT 644
G++ + D +E K A+ GI+V ++TGDN +AE+I ++ +D V
Sbjct: 156 GIIAVSDTLKESAKPAVQELKRMGIKVGMITGDNWRSAEAISRELN-----LDLV----- 205
Query: 645 ASEFEELPAMQQTVALQHMALFTRVEPSHKRMLVEALQNQNEVVAMTGDGVNDAPALKKA 704
V P K V+ LQ + EVVA GDG+NDAPAL +A
Sbjct: 206 ---------------------IAEVLPHQKSEEVKKLQAK-EVVAFVGDGINDAPALAQA 243
Query: 705 DIGIAMGSGTAVAKSASDMVLADDNFATIVAAVAEGRAIYNNTK 748
D+GIA+GSG+ VA + D+VL D+ +VAA+ R + K
Sbjct: 244 DLGIAVGSGSDVAVESGDIVLIRDDLRDVVAAIQLSRKTMSKIK 287
>pdb|2B8E|A Chain A, Copa Atp Binding Domain
pdb|2B8E|B Chain B, Copa Atp Binding Domain
pdb|2B8E|C Chain C, Copa Atp Binding Domain
Length = 273
Score = 78.2 bits (191), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 53/153 (34%), Positives = 77/153 (50%), Gaps = 32/153 (20%)
Query: 585 GLVGMLDPPREEVKNAMLSCMTAGIRVIVVTGDNKSTAESICHKIGAFDHLVDFVGRSYT 644
G++ + D +E K A+ GI+V +TGDN +AE+I ++ +D V
Sbjct: 136 GIIAVSDTLKESAKPAVQELKRXGIKVGXITGDNWRSAEAISRELN-----LDLV----- 185
Query: 645 ASEFEELPAMQQTVALQHMALFTRVEPSHKRMLVEALQNQNEVVAMTGDGVNDAPALKKA 704
V P K V+ LQ + EVVA GDG+NDAPAL +A
Sbjct: 186 ---------------------IAEVLPHQKSEEVKKLQAK-EVVAFVGDGINDAPALAQA 223
Query: 705 DIGIAMGSGTAVAKSASDMVLADDNFATIVAAV 737
D+GIA+GSG+ VA + D+VL D+ +VAA+
Sbjct: 224 DLGIAVGSGSDVAVESGDIVLIRDDLRDVVAAI 256
>pdb|3SKX|A Chain A, Crystal Structure Of The Atp Binding Domain Of
Archaeoglobus Fulgidus Copb
Length = 280
Score = 77.0 bits (188), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 51/162 (31%), Positives = 78/162 (48%), Gaps = 32/162 (19%)
Query: 585 GLVGMLDPPREEVKNAMLSCMTAGIRVIVVTGDNKSTAESICHKIGAFDHLVDFVGRSYT 644
G++ + D R E + A+ GI+ +++TGDN+ A+ + ++G D+
Sbjct: 137 GVIALADRIRPESREAISKLKAIGIKCMMLTGDNRFVAKWVAEELGLDDY---------- 186
Query: 645 ASEFEELPAMQQTVALQHMALFTRVEPSHKRMLVEALQNQNEVVAMTGDGVNDAPALKKA 704
F V P K V+ +Q Q V AM GDGVNDAPAL +A
Sbjct: 187 ---------------------FAEVLPHEKAEKVKEVQ-QKYVTAMVGDGVNDAPALAQA 224
Query: 705 DIGIAMGSGTAVAKSASDMVLADDNFATIVAAVAEGRAIYNN 746
D+GIA+G+GT VA +D+VL ++ + A V R Y+
Sbjct: 225 DVGIAIGAGTDVAVETADIVLVRNDPRDVAAIVELSRKTYSK 266
>pdb|3SKY|A Chain A, 2.1a Crystal Structure Of The Phosphate Bound Atp Binding
Domain Of Archaeoglobus Fulgidus Copb
Length = 274
Score = 76.6 bits (187), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 51/162 (31%), Positives = 78/162 (48%), Gaps = 32/162 (19%)
Query: 585 GLVGMLDPPREEVKNAMLSCMTAGIRVIVVTGDNKSTAESICHKIGAFDHLVDFVGRSYT 644
G++ + D R E + A+ GI+ +++TGDN+ A+ + ++G D+
Sbjct: 137 GVIALADRIRPESREAISKLKAIGIKCMMLTGDNRFVAKWVAEELGLDDY---------- 186
Query: 645 ASEFEELPAMQQTVALQHMALFTRVEPSHKRMLVEALQNQNEVVAMTGDGVNDAPALKKA 704
F V P K V+ +Q Q V AM GDGVNDAPAL +A
Sbjct: 187 ---------------------FAEVLPHEKAEKVKEVQ-QKYVTAMVGDGVNDAPALAQA 224
Query: 705 DIGIAMGSGTAVAKSASDMVLADDNFATIVAAVAEGRAIYNN 746
D+GIA+G+GT VA +D+VL ++ + A V R Y+
Sbjct: 225 DVGIAIGAGTDVAVETADIVLVRNDPRDVAAIVELSRKTYSK 266
>pdb|2VOY|H Chain H, Cryoem Model Of Copa, The Copper Transporting Atpase From
Archaeoglobus Fulgidus
Length = 48
Score = 70.5 bits (171), Expect = 4e-12, Method: Composition-based stats.
Identities = 42/48 (87%), Positives = 47/48 (97%)
Query: 285 LRGAIHYFKIAVALAVAAIPEGLPAVVTTCLALGTKRMARLNAIVRSL 332
+RGAI+YFKIAVALAVAAIPEGLPAV+TTCLALGT+RMA+ NAIVRSL
Sbjct: 1 IRGAIYYFKIAVALAVAAIPEGLPAVITTCLALGTRRMAKKNAIVRSL 48
>pdb|2VOY|I Chain I, Cryoem Model Of Copa, The Copper Transporting Atpase From
Archaeoglobus Fulgidus
Length = 128
Score = 67.0 bits (162), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 51/150 (34%), Positives = 70/150 (46%), Gaps = 40/150 (26%)
Query: 588 GMLDPPREEVKNAMLSCMTAGIRVIVVTGDNKSTAESICHKIGAFDHLVDFVGRSYTASE 647
G L +E K A+ GI+V +TGDN +AE+I ++ +D V
Sbjct: 18 GTLTKLKESAKPAVQELKRXGIKVGXITGDNWRSAEAISRELN-----LDLV-------- 64
Query: 648 FEELPAMQQTVALQHMALFTRVEPSHKRMLVEALQNQNEVVAMTGDGVNDAPALKKADIG 707
V P K V+ LQ + EVVA GDG+NDAPAL +AD+G
Sbjct: 65 ------------------IAEVLPHQKSEEVKKLQAK-EVVAFVGDGINDAPALAQADLG 105
Query: 708 IAMGSGTAVAKSASDMVLADDNFATIVAAV 737
IA+GSG D+VL D+ +VAA+
Sbjct: 106 IAVGSG--------DIVLIRDDLRDVVAAI 127
>pdb|2VOY|K Chain K, Cryoem Model Of Copa, The Copper Transporting Atpase From
Archaeoglobus Fulgidus
Length = 32
Score = 60.5 bits (145), Expect = 3e-09, Method: Composition-based stats.
Identities = 26/31 (83%), Positives = 29/31 (93%)
Query: 739 EGRAIYNNTKQFIRYMISSNIGEVVCIFVAA 769
EGRAIYNN KQFIRY+ISSN+GEVVCIF+ A
Sbjct: 1 EGRAIYNNMKQFIRYLISSNVGEVVCIFLTA 31
>pdb|2VOY|G Chain G, Cryoem Model Of Copa, The Copper Transporting Atpase From
Archaeoglobus Fulgidus
Length = 36
Score = 54.7 bits (130), Expect = 2e-07, Method: Composition-based stats.
Identities = 23/36 (63%), Positives = 30/36 (83%)
Query: 240 EDEVTPLKKKLDEFGTFLAKVIAGICVLVWIVNIGH 275
E + TPL++KLDEFG L+KVI+ ICV VW++NIGH
Sbjct: 1 EQDKTPLQQKLDEFGEQLSKVISLICVAVWLINIGH 36
>pdb|2VOY|B Chain B, Cryoem Model Of Copa, The Copper Transporting Atpase
From Archaeoglobus Fulgidus
Length = 42
Score = 54.3 bits (129), Expect = 2e-07, Method: Composition-based stats.
Identities = 24/41 (58%), Positives = 32/41 (78%)
Query: 36 YGKNVLPQEKRTAFWKLVLKQFDDLLVKILIAAAVISFFLA 76
YG N LP E+ + W+LV++QF+DLLV+IL+ AA ISF LA
Sbjct: 1 YGHNELPAEEGKSLWELVIEQFEDLLVRILLLAACISFVLA 41
>pdb|2YJ3|A Chain A, Conformational Changes In The Catalytic Domain Of The Cpx-
Atpase Copb-B Upon Nucleotide Binding
Length = 263
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 34/155 (21%), Positives = 72/155 (46%), Gaps = 31/155 (20%)
Query: 591 DPPREEVKNAMLSCMTAGIRVIVVTGDNKSTAESICHKIGAFDHLVDFVGRSYTASEFEE 650
D PR +K+ + G+++I+++GD + + + ++ ++
Sbjct: 135 DVPRPNLKDYLEKLKNEGLKIIILSGDKEDKVKELSKELNIQEY---------------- 178
Query: 651 LPAMQQTVALQHMALFTRVEPSHKRMLVEALQNQNEVVAMTGDGVNDAPALKKADIGIAM 710
++ + P K ++E L+ V M GDGVNDA AL AD+ +AM
Sbjct: 179 ---------------YSNLSPEDKVRIIEKLKQNGNKVLMIGDGVNDAAALALADVSVAM 223
Query: 711 GSGTAVAKSASDMVLADDNFATIVAAVAEGRAIYN 745
G+G ++K+ +D++L ++ T++ + + + N
Sbjct: 224 GNGVDISKNVADIILVSNDIGTLLGLIKNRKRLSN 258
>pdb|2YJ4|A Chain A, Conformational Changes In The Catalytic Domain Of The Cpx-
Atpase Copb-B Upon Nucleotide Binding
pdb|2YJ4|B Chain B, Conformational Changes In The Catalytic Domain Of The Cpx-
Atpase Copb-B Upon Nucleotide Binding
pdb|2YJ5|A Chain A, Conformational Changes In The Catalytic Domain Of The Cpx-
Atpase Copb-B Upon Nucleotide Binding
pdb|2YJ5|B Chain B, Conformational Changes In The Catalytic Domain Of The Cpx-
Atpase Copb-B Upon Nucleotide Binding
pdb|2YJ6|A Chain A, Conformational Changes In The Catalytic Domain Of The
Cpx-Atpase Copb-B Upon Nucleotide Binding
pdb|2YJ6|B Chain B, Conformational Changes In The Catalytic Domain Of The
Cpx-Atpase Copb-B Upon Nucleotide Binding
Length = 263
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 34/155 (21%), Positives = 72/155 (46%), Gaps = 31/155 (20%)
Query: 591 DPPREEVKNAMLSCMTAGIRVIVVTGDNKSTAESICHKIGAFDHLVDFVGRSYTASEFEE 650
D PR +K+ + G+++I+++GD + + + ++ ++
Sbjct: 135 DVPRPNLKDYLEKLKNEGLKIIILSGDKEDKVKELSKELNIQEY---------------- 178
Query: 651 LPAMQQTVALQHMALFTRVEPSHKRMLVEALQNQNEVVAMTGDGVNDAPALKKADIGIAM 710
++ + P K ++E L+ V M GDGVNDA AL AD+ +AM
Sbjct: 179 ---------------YSNLSPEDKVRIIEKLKQNGNKVLMIGDGVNDAAALALADVSVAM 223
Query: 711 GSGTAVAKSASDMVLADDNFATIVAAVAEGRAIYN 745
G+G ++K+ +D++L ++ T++ + + + N
Sbjct: 224 GNGVDISKNVADIILVSNDIGTLLGLIKNRKRLSN 258
>pdb|2IYE|A Chain A, Structure Of Catalytic Cpx-atpase Domain Copb-b
pdb|2IYE|C Chain C, Structure Of Catalytic Cpx-atpase Domain Copb-b
Length = 263
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 34/155 (21%), Positives = 72/155 (46%), Gaps = 31/155 (20%)
Query: 591 DPPREEVKNAMLSCMTAGIRVIVVTGDNKSTAESICHKIGAFDHLVDFVGRSYTASEFEE 650
D PR +K+ + G+++I+++GD + + + ++ ++
Sbjct: 135 DVPRPNLKDYLEKLKNEGLKIIILSGDKEDKVKELSKELNIQEY---------------- 178
Query: 651 LPAMQQTVALQHMALFTRVEPSHKRMLVEALQNQNEVVAMTGDGVNDAPALKKADIGIAM 710
++ + P K ++E L+ V M GDGVNDA AL AD+ +AM
Sbjct: 179 ---------------YSNLSPEDKVRIIEKLKQNGNKVLMIGDGVNDAAALALADVSVAM 223
Query: 711 GSGTAVAKSASDMVLADDNFATIVAAVAEGRAIYN 745
G+G ++K+ +D++L ++ T++ + + + N
Sbjct: 224 GNGVDISKNVADIILVSNDIGTLLGLIKNRKRLSN 258
>pdb|3GWI|A Chain A, Crystal Structure Of Mg-Atpase Nucleotide Binding Domain
Length = 170
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 57/116 (49%), Gaps = 12/116 (10%)
Query: 481 FKKVSILEFSRDRKMMSVLCS-----HKQMCVMFSKGAPESVLSRCTNILCNDNGFIVPM 535
++K+ + F +R+ MSV+ + H+ +C KGA + +L+ C+ + NG IVP+
Sbjct: 56 WQKIDEIPFDFERRRMSVVVAENTEHHQLVC----KGALQEILNVCSQV--RHNGEIVPL 109
Query: 536 TANIRAELESRLNSLAGKEALRCLALALKQMPINRQTLSYDDEKDLTFIGLVGMLD 591
+I R+ ++ LR +A+A K +P DE DL G + LD
Sbjct: 110 D-DIMLRKIKRVTDTLNRQGLRVVAVATKYLPAREGDYQRADESDLILEGYIAFLD 164
>pdb|1MO7|A Chain A, Atpase
pdb|1MO8|A Chain A, Atpase
Length = 213
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 60/250 (24%), Positives = 100/250 (40%), Gaps = 49/250 (19%)
Query: 355 NMMSVAKICVVHSVQQGPIIAEYGVTGTTYAPEGVVFDSSGIQLEFPAQLPCLLHIARCS 414
N M+VA + + + + TT GV FD + ++R +
Sbjct: 2 NPMTVAHMWFDNQIHEA---------DTTENQSGVSFDKTSATW---------FALSRIA 43
Query: 415 ALCNESVLQYNPDKGNYEK---IGEATEVALRVLAEKVGLPGFDSMPSALNMLSKHERAS 471
LCN +V Q N + K G+A+E AL E S + M K+ +
Sbjct: 44 GLCNRAVFQANQENLPILKRAVAGDASESALLKCIEVC-------CGSVMEMREKYTKIV 96
Query: 472 YCNHHWEIEFKKVSILEFSRDRKMMSVLCSHKQMCVMFSKGAPESVLSRCTNILCNDNGF 531
EI F + + S + + K + VM KGAPE +L RC++IL +G
Sbjct: 97 ------EIPFNSTNKYQLSIHKNPNA--SEPKHLLVM--KGAPERILDRCSSILL--HGK 144
Query: 532 IVPMTANIRAELESRLNSLAGKEALRCLALALKQMPINR--QTLSYDDEK------DLTF 583
P+ ++ ++ L G R L +P + + +D ++ +L F
Sbjct: 145 EQPLDEELKDAFQNAYLELGGL-GERVLGFCHLLLPDEQFPEGFQFDTDEVNFPVDNLCF 203
Query: 584 IGLVGMLDPP 593
+GL+ M+DPP
Sbjct: 204 VGLISMIDPP 213
>pdb|2HC8|A Chain A, Structure Of The A. Fulgidus Copa A-Domain
pdb|2VOY|F Chain F, Cryoem Model Of Copa, The Copper Transporting Atpase From
Archaeoglobus Fulgidus
Length = 113
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 43/74 (58%), Gaps = 3/74 (4%)
Query: 113 KALEELRAYQADIATVLRNGCFSILPAAELVPGDIVEVNVGCKIPADMRMIEMLSNQLRV 172
+A+++L QA A V+R+G +P E+ GDIV V G KIP D ++E + V
Sbjct: 1 EAIKKLVGLQAKTAVVIRDGKEIAVPVEEVAVGDIVIVRPGEKIPVDGVVVE---GESYV 57
Query: 173 DQAILTGESCSVEK 186
D+++++GE V K
Sbjct: 58 DESMISGEPVPVLK 71
>pdb|1Q3I|A Chain A, Crystal Structure Of Na,K-Atpase N-Domain
Length = 214
Score = 42.7 bits (99), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 59/249 (23%), Positives = 97/249 (38%), Gaps = 54/249 (21%)
Query: 356 MMSVAKICVVHSVQQGPIIAEYGVTGTTYAPEGVVFDSSGIQLEFPAQLPCLLHIARCSA 415
MM+VA + + + + TT G FD P ++R +
Sbjct: 1 MMTVAHMWFDNQIHEA---------DTTEDQSGATFDKRS---------PTWTALSRIAG 42
Query: 416 LCNESVL---QYNPDKGNYEKIGEATEVALRVLAEKVGLPGFDSMPSALNMLSKHERASY 472
LCN +V Q N + G+A+E AL E S S M ++ + +
Sbjct: 43 LCNRAVFKAGQENISVSKRDTAGDASESALLKCIEL-------SCGSVRKMRDRNPKVA- 94
Query: 473 CNHHWEIEFKKVSILEFS-RDRKMMSVLCSHKQMCVMFSKGAPESVLSRCTNILCNDNGF 531
EI F + + S +R+ + Q V+ KGAPE +L RC++IL G
Sbjct: 95 -----EISFNSTNKYQLSIHERE------DNPQSHVLVMKGAPERILDRCSSILV--QGK 141
Query: 532 IVPMTANIRAELESRLNSLAGKEALRCLALALKQMP---------INRQTLSYDDEKDLT 582
+P+ ++ ++ L G R L +P + L++ EK L
Sbjct: 142 EIPLDKEMQDAFQNAYLELGGL-GERVLGFCQLNLPSGKFPRGFKFDTDELNFPTEK-LC 199
Query: 583 FIGLVGMLD 591
F+GL+ M+D
Sbjct: 200 FVGLMSMID 208
>pdb|2KIJ|A Chain A, Solution Structure Of The Actuator Domain Of The Copper-
Transporting Atpase Atp7a
Length = 124
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 52/94 (55%), Gaps = 9/94 (9%)
Query: 113 KALEELRAYQADIATVLRNGCFSILPAAELVP------GDIVEVNVGCKIPADMRMIEML 166
+AL +L + QA AT++ +IL + E V GDI++V G K P D R+IE
Sbjct: 7 EALAKLISLQATEATIVTLDSDNILLSEEQVDVELVQRGDIIKVVPGGKFPVDGRVIEGH 66
Query: 167 SNQLRVDQAILTGESCSVEKELDSIIATNAVYQD 200
S VD++++TGE+ V K+ S + ++ Q+
Sbjct: 67 S---MVDESLITGEAMPVAKKPGSTVIAGSINQN 97
>pdb|3R4C|A Chain A, Divergence Of Structure And Function Among Phosphatases Of
The Haloalkanoate (Had) Enzyme Superfamily: Analysis Of
Bt1666 From Bacteroides Thetaiotaomicron
Length = 268
Score = 37.4 bits (85), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 22/33 (66%)
Query: 692 GDGVNDAPALKKADIGIAMGSGTAVAKSASDMV 724
GDG ND P LK A IG+AMG+ + +S +D V
Sbjct: 217 GDGGNDIPMLKAAGIGVAMGNASEKVQSVADFV 249
>pdb|4DW8|A Chain A, Crystal Structure Of A Haloacid Dehalogenase-Like
Hydrolase (Target Efi-900331) From Bacteroides
Thetaiotaomicron With Bound Na Crystal Form I
pdb|4DWO|A Chain A, Crystal Structure Of A Haloacid Dehalogenase-Like
Hydrolase (Target Efi-900331) From Bacteroides
Thetaiotaomicron With Bound Mg Crystal Form Ii
Length = 279
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 27/49 (55%)
Query: 676 MLVEALQNQNEVVAMTGDGVNDAPALKKADIGIAMGSGTAVAKSASDMV 724
+L+E + E V GDG ND +K A +G+AMG+ K A+D +
Sbjct: 204 VLLENIGMTREEVIAIGDGYNDLSMIKFAGMGVAMGNAQEPVKKAADYI 252
>pdb|2RAR|A Chain A, X-Ray Crystallographic Structures Show Conservation Of A
Trigonal- Bipyramidal Intermediate In A
Phosphoryl-Transfer Superfamily.
pdb|2RAV|A Chain A, X-Ray Crystallographic Structures Show Conservation Of A
Trigonal- Bipyramidal Intermediate In A
Phosphoryl-Transfer Superfamily
Length = 261
Score = 34.7 bits (78), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 21/35 (60%)
Query: 692 GDGVNDAPALKKADIGIAMGSGTAVAKSASDMVLA 726
GDG ND L+ A IG+AMG K+A+D V A
Sbjct: 210 GDGGNDISMLRHAAIGVAMGQAKEDVKAAADYVTA 244
>pdb|1YMQ|A Chain A, Had Superfamily Phosphotransferase Substrate
Diversification: Structure And Function Analysis Of The
Had Subclass Iib Sugar Phosphatase Bt4131
pdb|2RB5|A Chain A, X-ray Crystallographic Structures Show Conservation Of A
Trigonal- Bipyramidal Intermediate In A
Phosphoryl-transfer Superfamily.
pdb|2RBK|A Chain A, X-ray Crystallographic Structures Show Conservation Of A
Trigonal- Bipyramidal Intermediate In A
Phosphoryl-transfer Superfamily
Length = 261
Score = 34.7 bits (78), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 21/35 (60%)
Query: 692 GDGVNDAPALKKADIGIAMGSGTAVAKSASDMVLA 726
GDG ND L+ A IG+AMG K+A+D V A
Sbjct: 210 GDGGNDISMLRHAAIGVAMGQAKEDVKAAADYVTA 244
>pdb|3NIW|A Chain A, Crystal Structure Of A Haloacid Dehalogenase-Like
Hydrolase From Bacteroides Thetaiotaomicron
Length = 279
Score = 33.1 bits (74), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 25/49 (51%)
Query: 676 MLVEALQNQNEVVAMTGDGVNDAPALKKADIGIAMGSGTAVAKSASDMV 724
+L+E + E V GDG ND +K A G+A G+ K A+D +
Sbjct: 204 VLLENIGXTREEVIAIGDGYNDLSXIKFAGXGVAXGNAQEPVKKAADYI 252
>pdb|1NF2|A Chain A, X-Ray Crystal Structure Of Tm0651 From Thermotoga Maritima
pdb|1NF2|B Chain B, X-Ray Crystal Structure Of Tm0651 From Thermotoga Maritima
pdb|1NF2|C Chain C, X-Ray Crystal Structure Of Tm0651 From Thermotoga Maritima
Length = 268
Score = 32.3 bits (72), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 28/55 (50%)
Query: 675 RMLVEALQNQNEVVAMTGDGVNDAPALKKADIGIAMGSGTAVAKSASDMVLADDN 729
R L E + + E + + GD ND ++A + +AM + K ASD+V +N
Sbjct: 196 RFLRERMNWKKEEIVVFGDNENDLFMFEEAGLRVAMENAIEKVKEASDIVTLTNN 250
>pdb|1RRV|A Chain A, X-Ray Crystal Structure Of Tdp-Vancosaminyltransferase
Gtfd As A Complex With Tdp And The Natural Substrate,
Desvancosaminyl Vancomycin.
pdb|1RRV|B Chain B, X-Ray Crystal Structure Of Tdp-Vancosaminyltransferase
Gtfd As A Complex With Tdp And The Natural Substrate,
Desvancosaminyl Vancomycin
Length = 416
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 22/36 (61%)
Query: 437 ATEVALRVLAEKVGLPGFDSMPSALNMLSKHERASY 472
A +R +AEK+GLP F S+PS + + S H +Y
Sbjct: 105 AAATGVRSVAEKLGLPFFYSVPSPVYLASPHLPPAY 140
>pdb|4EZE|A Chain A, Crystal Structure Of Had Family Hydrolase T0658 From
Salmonella Enterica Subsp. Enterica Serovar Typhi
(Target Efi-501419)
pdb|4EZE|B Chain B, Crystal Structure Of Had Family Hydrolase T0658 From
Salmonella Enterica Subsp. Enterica Serovar Typhi
(Target Efi-501419)
Length = 317
Score = 30.4 bits (67), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 44/190 (23%), Positives = 75/190 (39%), Gaps = 7/190 (3%)
Query: 534 PMTAN--IRAELESRLNSLAG-KEALRCLALALKQMPINRQTLSYDDEKDLTFIGLVGML 590
P+ AN I +++S + G E R L ++ + I +Q + + + +F +GML
Sbjct: 104 PLPANGIIAFDMDSTFIAEEGVDEIARELGMSTQITAITQQAMEGKLDFNASFTRRIGML 163
Query: 591 DPPREEVKNAMLSCMTAGIRVIVVTGDNKSTAESICHKIGAFDHLVDFVGRSYTAS-EFE 649
+ V NA+ MT ++ + K+ G D + Y F
Sbjct: 164 KGTPKAVLNAVCDRMTLSPGLLTILPVIKAKGFKTAIISGGLDIFTQRLKARYQLDYAFS 223
Query: 650 ELPAMQQTVALQHMALFTRVEPSHKRMLVEALQNQN---EVVAMTGDGVNDAPALKKADI 706
++ V ++ L + K+ LV+ N E + GDG ND P L+ A
Sbjct: 224 NTVEIRDNVLTDNITLPIMNAANKKQTLVDLAARLNIATENIIACGDGANDLPMLEHAGT 283
Query: 707 GIAMGSGTAV 716
GIA + V
Sbjct: 284 GIAWKAKPVV 293
>pdb|3PYD|A Chain A, Crystal Structure Of
4-Diphosphocytidyl-2-C-Methyl-D-Erythritol Kinase (Ispe)
From Mycobacterium Tuberculosis
pdb|3PYE|A Chain A, Mycobacterium Tuberculosis
4-Diphosphocytidyl-2-C-Methyl-D-Erythritol Kinase (Ispe)
In Complex With Cdpme
pdb|3PYF|A Chain A, Mycobacterium Tuberculosis
4-Diphosphocytidyl-2-C-Methyl-D-Erythritol Kinase (Ispe)
In Complex With Amp-Pnp
pdb|3PYG|A Chain A, Mycobacterium Tuberculosis
4-Diphosphocytidyl-2-C-Methyl-D-Erythritol Kinase (Ispe)
In Complex With Adp
Length = 306
Score = 29.3 bits (64), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 36/83 (43%), Gaps = 6/83 (7%)
Query: 704 ADIGIAMGSGTAVAKSASD---MVLADDNFATIVAAVAEG---RAIYNNTKQFIRYMISS 757
+D+ A+ GTA+ + VL+ + F ++A G A+YN +
Sbjct: 139 SDVPFALHGGTALGTGRGEELATVLSRNTFHWVLAFADSGLLTSAVYNELDRLREVGDPP 198
Query: 758 NIGEVVCIFVAAVLGIPDTLAPV 780
+GE + A G PD LAP+
Sbjct: 199 RLGEPGPVLAALAAGDPDQLAPL 221
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.134 0.386
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,196,045
Number of Sequences: 62578
Number of extensions: 762851
Number of successful extensions: 2079
Number of sequences better than 100.0: 48
Number of HSP's better than 100.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 1929
Number of HSP's gapped (non-prelim): 82
length of query: 787
length of database: 14,973,337
effective HSP length: 107
effective length of query: 680
effective length of database: 8,277,491
effective search space: 5628693880
effective search space used: 5628693880
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)