Your job contains 1 sequence.
>003910
MTKRKFGFEGFNINRQTSYSFEQSQAPQRLYVPPSSRYSHDNYEDTDLDNIDYEDNDAAK
AANDTGNGAEKEEIDPLDAFMEGIHEEMRAAPPPKPKEKLERYKDDDEEDPMESFLMAKK
DVGLTLAADALRAGYDSDEEVYAAAKAVDAGMLDYDSDDNPVVVEKKKIEPIPALDHSLI
DYEPFNKDFYQDSASISGMSEQDVMEYKKSLAIRVSGFDVPRPVKTFEDCGFSTQLMHAI
SKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPI
GVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLI
DMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKL
AREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEKLPGMIDDGDVLVFASKK
TTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIK
SVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELVNSLIAAGQNVSME
LMDLAMKDGRFRSKRDARKGGGKKGKGRGGAGRGVRGVDFGLGIGYTPESNNTSSQSVPS
RSAAVNSLKTGMMTQFRSNFVAASSNTPSEGFNNSASAYANKRPALRGFVSGGSIGGDVN
GTQTTGLTGFVSGGSIGGEMSGTQTTSSFSPVSGVNSSRVNYGESAHQKNSERDRPRERR
RPSGWDR
The BLAST search returned 1 gene product which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 003910
(787 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2065215 - symbol:AT2G47330 species:3702 "Arabi... 2722 3.5e-288 2
UNIPROTKB|Q5R7D1 - symbol:DDX42 "ATP-dependent RNA helica... 1359 4.9e-142 2
UNIPROTKB|E1BJD2 - symbol:DDX42 "Uncharacterized protein"... 1351 4.4e-141 2
UNIPROTKB|F1NJ40 - symbol:DDX42 "ATP-dependent RNA helica... 1379 5.5e-141 1
ZFIN|ZDB-GENE-050706-53 - symbol:ddx42 "DEAD (Asp-Glu-Ala... 1378 7.0e-141 1
UNIPROTKB|E2RFF1 - symbol:DDX42 "Uncharacterized protein"... 1359 7.1e-141 2
UNIPROTKB|Q5F485 - symbol:DDX42 "ATP-dependent RNA helica... 1377 8.9e-141 1
DICTYBASE|DDB_G0288501 - symbol:ddx42 "DEAD/DEAH box heli... 1375 1.5e-140 1
MGI|MGI:1919297 - symbol:Ddx42 "DEAD (Asp-Glu-Ala-Asp) bo... 1367 1.0e-139 1
UNIPROTKB|Q86XP3 - symbol:DDX42 "ATP-dependent RNA helica... 1360 5.6e-139 1
RGD|1304909 - symbol:Ddx42 "DEAD (Asp-Glu-Ala-Asp) box po... 1353 3.1e-138 1
UNIPROTKB|F1P0H1 - symbol:DDX42 "ATP-dependent RNA helica... 1347 1.3e-137 1
FB|FBgn0036104 - symbol:CG6418 species:7227 "Drosophila m... 1291 1.2e-131 1
UNIPROTKB|F1RSJ7 - symbol:DDX42 "Uncharacterized protein"... 1291 1.2e-131 1
WB|WBGene00008119 - symbol:C46F11.4 species:6239 "Caenorh... 1247 5.3e-127 1
TAIR|locus:2037416 - symbol:RCF1 "regulator of CBF gene e... 1162 9.5e-120 2
POMBASE|SPCC10H11.01 - symbol:prp11 "ATP-dependent RNA he... 1063 3.8e-114 2
ZFIN|ZDB-GENE-030131-667 - symbol:ddx46 "DEAD (Asp-Glu-Al... 1040 5.7e-113 3
UNIPROTKB|I3LR20 - symbol:DDX46 "Uncharacterized protein"... 1045 2.3e-112 2
UNIPROTKB|F1PK90 - symbol:DDX46 "Uncharacterized protein"... 1045 3.0e-112 2
UNIPROTKB|Q7L014 - symbol:DDX46 "Probable ATP-dependent R... 1045 3.0e-112 2
UNIPROTKB|F1MX40 - symbol:DDX46 "Uncharacterized protein"... 1040 1.0e-111 2
UNIPROTKB|E1BSC0 - symbol:DDX46 "Uncharacterized protein"... 1082 1.6e-111 2
DICTYBASE|DDB_G0275443 - symbol:helB1 "putative RNA splic... 1036 7.3e-111 3
TAIR|locus:2074899 - symbol:AT3G09620 species:3702 "Arabi... 909 1.5e-110 2
RGD|708480 - symbol:Ddx46 "DEAD (Asp-Glu-Ala-Asp) box pol... 1079 3.4e-109 1
UNIPROTKB|Q62780 - symbol:Ddx46 "Probable ATP-dependent R... 1079 3.4e-109 1
TAIR|locus:2162022 - symbol:AT5G63120 species:3702 "Arabi... 1078 4.3e-109 1
ASPGD|ASPL0000055571 - symbol:AN1266 species:162425 "Emer... 1058 4.4e-109 2
UNIPROTKB|A4RN46 - symbol:PRP5 "Pre-mRNA-processing ATP-d... 1048 9.1e-109 2
MGI|MGI:1920895 - symbol:Ddx46 "DEAD (Asp-Glu-Ala-Asp) bo... 1073 1.5e-108 1
FB|FBgn0030631 - symbol:CG6227 species:7227 "Drosophila m... 1025 7.2e-107 2
WB|WBGene00018776 - symbol:F53H1.1 species:6239 "Caenorha... 1051 3.1e-106 1
TAIR|locus:2035741 - symbol:RH20 "RNA helicase 20" specie... 1045 1.4e-105 1
SGD|S000005056 - symbol:DBP2 "ATP-dependent RNA helicase ... 1025 1.8e-103 1
CGD|CAL0003204 - symbol:DBP2 species:5476 "Candida albica... 1023 2.9e-103 1
FB|FBgn0035720 - symbol:CG10077 species:7227 "Drosophila ... 978 4.1e-102 2
POMBASE|SPBP8B7.16c - symbol:dbp2 "ATP-dependent RNA heli... 1003 3.8e-101 1
ASPGD|ASPL0000006660 - symbol:AN5931 species:162425 "Emer... 994 3.4e-100 1
DICTYBASE|DDB_G0293168 - symbol:ddx17 "DEAD/DEAH box heli... 991 7.1e-100 1
UNIPROTKB|A4QSS5 - symbol:DBP2 "ATP-dependent RNA helicas... 982 6.4e-99 1
FB|FBgn0003261 - symbol:Rm62 "Rm62" species:7227 "Drosoph... 952 2.0e-98 2
FB|FBgn0029979 - symbol:CG10777 species:7227 "Drosophila ... 948 2.6e-98 2
ZFIN|ZDB-GENE-030131-18 - symbol:si:dkey-156n14.5 "si:dke... 936 4.8e-94 1
ZFIN|ZDB-GENE-030131-925 - symbol:ddx5 "DEAD (Asp-Glu-Ala... 932 1.3e-93 1
CGD|CAL0005725 - symbol:PRP5 species:5476 "Candida albica... 926 5.5e-93 1
UNIPROTKB|Q5ADL0 - symbol:PRP5 "Pre-mRNA-processing ATP-d... 926 5.5e-93 1
UNIPROTKB|E2RJ60 - symbol:DDX17 "Uncharacterized protein"... 900 1.0e-92 2
UNIPROTKB|F1PID8 - symbol:DDX17 "Uncharacterized protein"... 900 1.0e-92 2
UNIPROTKB|A7E307 - symbol:DDX17 "Uncharacterized protein"... 900 2.7e-92 2
UNIPROTKB|F1SKQ0 - symbol:DDX17 "Uncharacterized protein"... 900 2.7e-92 2
UNIPROTKB|Q5R4I9 - symbol:DDX5 "Probable ATP-dependent RN... 917 5.0e-92 1
UNIPROTKB|F1MBQ8 - symbol:DDX5 "Uncharacterized protein" ... 915 8.1e-92 1
UNIPROTKB|F1PEA6 - symbol:DDX5 "Uncharacterized protein" ... 915 8.1e-92 1
UNIPROTKB|J3KTA4 - symbol:DDX5 "Probable ATP-dependent RN... 915 8.1e-92 1
UNIPROTKB|P17844 - symbol:DDX5 "Probable ATP-dependent RN... 915 8.1e-92 1
UNIPROTKB|Q4R6M5 - symbol:DDX5 "Probable ATP-dependent RN... 915 8.1e-92 1
UNIPROTKB|E1C2R8 - symbol:DDX17 "Uncharacterized protein"... 914 1.0e-91 1
MGI|MGI:105037 - symbol:Ddx5 "DEAD (Asp-Glu-Ala-Asp) box ... 914 1.0e-91 1
RGD|619906 - symbol:Ddx5 "DEAD (Asp-Glu-Ala-Asp) box heli... 914 1.0e-91 1
UNIPROTKB|A5A6J2 - symbol:DDX5 "Probable ATP-dependent RN... 908 4.5e-91 1
UNIPROTKB|F1NM08 - symbol:DDX5 "Uncharacterized protein" ... 901 2.5e-90 1
UNIPROTKB|F1NXI3 - symbol:DDX5 "Uncharacterized protein" ... 901 2.5e-90 1
UNIPROTKB|H3BLZ8 - symbol:DDX17 "Probable ATP-dependent R... 900 3.1e-90 1
UNIPROTKB|Q92841 - symbol:DDX17 "Probable ATP-dependent R... 900 3.1e-90 1
MGI|MGI:1914290 - symbol:Ddx17 "DEAD (Asp-Glu-Ala-Asp) bo... 900 3.1e-90 1
WB|WBGene00010260 - symbol:F58E10.3 species:6239 "Caenorh... 896 8.3e-90 1
GENEDB_PFALCIPARUM|PF14_0437 - symbol:PF14_0437 "helicase... 890 3.6e-89 1
UNIPROTKB|Q8IL13 - symbol:PF14_0437 "Helicase, putative" ... 890 3.6e-89 1
UNIPROTKB|C9JMU5 - symbol:DDX17 "Probable ATP-dependent R... 889 4.6e-89 1
TAIR|locus:2222617 - symbol:AT5G14610 species:3702 "Arabi... 798 4.6e-89 4
SGD|S000000441 - symbol:PRP5 "RNA helicase in the DEAD-bo... 667 1.7e-84 3
TAIR|locus:2084178 - symbol:DRH1 "DEAD box RNA helicase 1... 843 3.4e-84 1
TAIR|locus:2081061 - symbol:AT3G06480 species:3702 "Arabi... 841 5.6e-84 1
FB|FBgn0037549 - symbol:CG7878 species:7227 "Drosophila m... 832 5.0e-83 1
TAIR|locus:2041549 - symbol:AT2G42520 species:3702 "Arabi... 792 2.2e-82 2
GENEDB_PFALCIPARUM|PFE0430w - symbol:PFE0430w "ATP-depend... 822 2.7e-82 2
UNIPROTKB|Q8I416 - symbol:PFE0430w "ATP-dependent RNA Hel... 822 2.7e-82 2
UNIPROTKB|F1SQ03 - symbol:LOC100524536 "Uncharacterized p... 824 3.6e-82 1
UNIPROTKB|Q9NXZ2 - symbol:DDX43 "Probable ATP-dependent R... 822 5.8e-82 1
ZFIN|ZDB-GENE-080204-77 - symbol:ddx43 "DEAD (Asp-Glu-Ala... 822 5.8e-82 1
UNIPROTKB|I3LDV0 - symbol:DDX3Y "Uncharacterized protein"... 756 1.5e-81 3
UNIPROTKB|I3LHW0 - symbol:I3LHW0 "Uncharacterized protein... 818 1.5e-81 1
WB|WBGene00017162 - symbol:ddx-23 species:6239 "Caenorhab... 512 2.0e-81 2
TAIR|locus:2076351 - symbol:AT3G58510 species:3702 "Arabi... 782 3.2e-81 2
FB|FBgn0263231 - symbol:bel "belle" species:7227 "Drosoph... 757 5.1e-81 3
UNIPROTKB|E1BII7 - symbol:DDX43 "Uncharacterized protein"... 813 5.2e-81 1
UNIPROTKB|F1RX16 - symbol:DDX3X "Uncharacterized protein"... 758 1.0e-80 3
RGD|1308685 - symbol:Ddx23 "DEAD (Asp-Glu-Ala-Asp) box po... 513 1.3e-80 2
UNIPROTKB|A6QLB2 - symbol:DDX23 "Uncharacterized protein"... 513 1.4e-80 2
UNIPROTKB|E2RTL6 - symbol:DDX23 "Uncharacterized protein"... 513 1.4e-80 2
UNIPROTKB|Q9BUQ8 - symbol:DDX23 "Probable ATP-dependent R... 513 1.4e-80 2
WB|WBGene00006888 - symbol:vbh-1 species:6239 "Caenorhabd... 738 2.2e-80 3
DICTYBASE|DDB_G0293064 - symbol:DDB_G0293064 species:4468... 772 1.2e-79 2
UNIPROTKB|D3IVZ2 - symbol:DDX3Y "Uncharacterized protein"... 753 1.5e-79 3
ZFIN|ZDB-GENE-030131-6215 - symbol:ddx23 "DEAD (Asp-Glu-A... 506 1.8e-79 2
UNIPROTKB|E9PT29 - symbol:Ddx17 "Protein Ddx17" species:1... 793 6.8e-79 1
FB|FBgn0015331 - symbol:abs "abstrakt" species:7227 "Dros... 767 1.7e-78 2
SGD|S000003046 - symbol:DBP3 "RNA-Dependent ATPase, membe... 788 2.3e-78 1
DICTYBASE|DDB_G0283661 - symbol:ddx3 "DEAD/DEAH box helic... 727 2.7e-78 3
WARNING: Descriptions of 910 database sequences were not reported due to the
limiting value of parameter V = 100.
>TAIR|locus:2065215 [details] [associations]
symbol:AT2G47330 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0003723 EMBL:AC002337 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 UniGene:At.12226 UniGene:At.25582
HOGENOM:HOG000268793 KO:K12835 EMBL:AY057700 EMBL:AY124871
IPI:IPI00516775 PIR:H84913 RefSeq:NP_566099.1
ProteinModelPortal:O22907 SMR:O22907 STRING:O22907 PaxDb:O22907
PRIDE:O22907 EnsemblPlants:AT2G47330.1 GeneID:819346
KEGG:ath:AT2G47330 GeneFarm:942 TAIR:At2g47330 InParanoid:O22907
OMA:QEYANLM PhylomeDB:O22907 ProtClustDB:CLSN2688982
Genevestigator:O22907 GermOnline:AT2G47330 Uniprot:O22907
Length = 760
Score = 2722 (963.3 bits), Expect = 3.5e-288, Sum P(2) = 3.5e-288
Identities = 544/730 (74%), Positives = 612/730 (83%)
Query: 1 MTKRKFGFEGFNINRQTSYSFEQSQAPQRLYVPPSSRYSHDNYEDTDLDNIDYEDNDAAK 60
M+ RKFG EGF INRQTSYSFE+SQAPQRLYVPPSSR DN ED DLDNIDY +N+ A+
Sbjct: 1 MSNRKFGMEGFGINRQTSYSFERSQAPQRLYVPPSSR-GGDNSEDADLDNIDYMENEEAE 59
Query: 61 AANDTG-----NGAEKEEIDPLDAFMEGIHXXXXXXXXXXXXXXXXXXXDDDEEDPMESF 115
+ G +G E +EIDPLDAFMEGIH DDD+ DP+ES+
Sbjct: 60 EDIEEGGSAAASGGEVDEIDPLDAFMEGIHQEMKSAPPPKPKEKLERYKDDDD-DPVESY 118
Query: 116 LMAKKDVGLTLAADALRAGYDSDEEVYAAAKAVDAGMLDYDSDDNPVVVEKKKIEPIPAL 175
L AKKD+GLTLAADAL AGY+SDEEVYAAAKAVDAGMLDYDSDDNP+VV+K+KIEPI AL
Sbjct: 119 LKAKKDLGLTLAADALNAGYNSDEEVYAAAKAVDAGMLDYDSDDNPIVVDKRKIEPITAL 178
Query: 176 DHSLIDYEPFNKDFYQDSASISGMSEQDVMEYKKSLAIRVSGFDVPRPVKTFEDCGFSTQ 235
DHS IDYEP NKDFY++ SISGM+EQ+ +Y++ L IRVSGFDV RPVKTFEDCGFS+Q
Sbjct: 179 DHSSIDYEPINKDFYEELESISGMTEQETTDYRQRLGIRVSGFDVHRPVKTFEDCGFSSQ 238
Query: 236 LMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQK 295
+M AI KQ YEKPT+IQCQALPI+LSGRD+IGIAKTGSGKTAAFVLPMIVHIMDQPELQ+
Sbjct: 239 IMSAIKKQAYEKPTAIQCQALPIVLSGRDVIGIAKTGSGKTAAFVLPMIVHIMDQPELQR 298
Query: 296 EEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIAT 355
+EGPIGVICAPTRELAHQI+LE KKF+K++G+RVSAVYGGMSK +QFKELKAGCEIV+AT
Sbjct: 299 DEGPIGVICAPTRELAHQIFLEAKKFSKAYGLRVSAVYGGMSKHEQFKELKAGCEIVVAT 358
Query: 356 PGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMPR 415
PGRLIDMLKMKALTM R +YLVLDEADRMFDLGFEPQ+RSIVGQIRPDRQTLLFSATMP
Sbjct: 359 PGRLIDMLKMKALTMMRASYLVLDEADRMFDLGFEPQVRSIVGQIRPDRQTLLFSATMPW 418
Query: 416 KVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEKLPGMIDDGDVLV 475
KVEKLAREILSDP+RVTVGEVGMANEDITQVV+VIPSDAEKLPWLLEKLPGMID+GDVLV
Sbjct: 419 KVEKLAREILSDPIRVTVGEVGMANEDITQVVNVIPSDAEKLPWLLEKLPGMIDEGDVLV 478
Query: 476 FASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLD 535
FASKK TVDEIE+QL FK AALHGDKDQASRME LQKFKSGV+HVLIATDVAARGLD
Sbjct: 479 FASKKATVDEIEAQLTLNSFKVAALHGDKDQASRMETLQKFKSGVHHVLIATDVAARGLD 538
Query: 536 IKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELVNSLIAAGQ 595
IKS+K+VVN+DIA+DMDMHVHRIGRTGRAGD+DG AYTLVTQ+EARFAGELVNSL+AAGQ
Sbjct: 539 IKSLKTVVNYDIAKDMDMHVHRIGRTGRAGDRDGVAYTLVTQREARFAGELVNSLVAAGQ 598
Query: 596 NVSMELMDLAMKDGRFRSXXXXXXXXXXXXXXXXXXXXXXXXXXFGLGIGYTPESNNT-S 654
NV EL DLAMKDGRF+S FGLGIG++ ES+ T S
Sbjct: 599 NVPPELTDLAMKDGRFKSKRDGRKGGKKGRGGGGGNKGVRGVD-FGLGIGFSSESSRTPS 657
Query: 655 SQSVPSRSAAVNSLKTGMMTQFRSNFVAASSNTPSEGFNNSASAYANKRPALRGFVSGGS 714
S++ PSRS A+NS++TG+M QF+++FVAA TPS N AY NKRP+L GFVSGG+
Sbjct: 658 SKAAPSRSGAINSVRTGVMAQFKNSFVAA---TPS---NPQNQAYPNKRPSLMGFVSGGT 711
Query: 715 IGGDVNGTQT 724
IGGD+ TQ+
Sbjct: 712 IGGDMGRTQS 721
Score = 70 (29.7 bits), Expect = 3.5e-288, Sum P(2) = 3.5e-288
Identities = 24/74 (32%), Positives = 31/74 (41%)
Query: 680 FVAASSNTPSEGFNNSASAYANK-RPALRGFVSGGSIGGDVNGTQTTG-------LTGFV 731
F + SS TPS S S N R + + + Q L GFV
Sbjct: 648 FSSESSRTPSSKAAPSRSGAINSVRTGVMAQFKNSFVAATPSNPQNQAYPNKRPSLMGFV 707
Query: 732 SGGSIGGEMSGTQT 745
SGG+IGG+M TQ+
Sbjct: 708 SGGTIGGDMGRTQS 721
>UNIPROTKB|Q5R7D1 [details] [associations]
symbol:DDX42 "ATP-dependent RNA helicase DDX42"
species:9601 "Pongo abelii" [GO:0005634 "nucleus" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISS] [GO:0008104 "protein
localization" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0008104 GO:GO:0016607 GO:GO:0003723
GO:GO:0015030 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 HSSP:P09052
CTD:11325 HOVERGEN:HBG081425 KO:K12835 EMBL:CR860187
RefSeq:NP_001126368.1 UniGene:Pab.3212 ProteinModelPortal:Q5R7D1
GeneID:100173349 KEGG:pon:100173349 Uniprot:Q5R7D1
Length = 942
Score = 1359 (483.5 bits), Expect = 4.9e-142, Sum P(2) = 4.9e-142
Identities = 304/716 (42%), Positives = 415/716 (57%)
Query: 38 YSHDNYEDT---DLDNIDYEDNDAAKAANDTGNGAEKEEIDPLDAFMEGIHXXXXXXXXX 94
Y D ED+ DL I E++ + + ++ ++ DPL+AFM +
Sbjct: 75 YFEDEEEDSSNVDLPYIPAENSPTRQQFHSKPIDSDSDD-DPLEAFMAEVEDQAARDMKR 133
Query: 95 XXXXXXXXXXDDDEEDPMESFLMAKKDVGLTLAADALRAGYDSDEEVYAAAKAVDAGMLD 154
D +E ++ A+ AG +EE L+
Sbjct: 134 LEEKDKERKNVKGIRDDIEE--EDDQETYFRYMAENPTAGVVQEEE---------EDNLE 182
Query: 155 YDSDDNPVVVEKKKIEPIPALDHSLIDYEPFNKDFYQDSASISGMSEQDVMEYKKSLAIR 214
YDSD NP+ KK I+P+P +DHS IDY PF K+FY + I+ ++ Q +++ + L +R
Sbjct: 183 YDSDGNPIAPTKKIIDPLPPIDHSEIDYPPFEKNFYNEHEEITNLTPQQLIDLRHKLNLR 242
Query: 215 VSGFDVPRPVKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSG 274
VSG PRP +F GF QLMH I K Y +PT IQCQ +P+ LSGRD+IGIAKTGSG
Sbjct: 243 VSGAAPPRPGSSFAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTGSG 302
Query: 275 KTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYG 334
KTAAF+ PM++HIMDQ EL+ +GPI VI PTREL QI+ E K+F K++ +R AVYG
Sbjct: 303 KTAAFIWPMLIHIMDQKELEPGDGPIAVIVCPTRELCQQIHAEGKRFGKAYNLRSVAVYG 362
Query: 335 GMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIR 394
G S +Q K L+ G EIV+ TPGRLID +K KA + RV+YLV DEADRMFD+GFE Q+R
Sbjct: 363 GGSMWEQAKALQEGAEIVVCTPGRLIDHVKKKATNLQRVSYLVFDEADRMFDMGFEYQVR 422
Query: 395 SIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDA 454
SI +RPDRQTLLFSAT +K+EKLAR+IL DP+RV G++G ANED+TQ+V ++ S
Sbjct: 423 SIASHVRPDRQTLLFSATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEILHSGP 482
Query: 455 EKLPWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQ 514
K WL +L G VL+F +KK +E+ + L Q+G LHGD DQ+ R +++
Sbjct: 483 SKWNWLTRRLVEFTSSGSVLLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVIS 542
Query: 515 KFKSGVYHVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTL 574
FK VL+ATDVAARGLDI SIK+V+N+D+ARD+D H HRIGRTGRAG+K G AYTL
Sbjct: 543 DFKKKDIPVLVATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEK-GVAYTL 601
Query: 575 VTQKEARFAGELVNSLIAAGQNVSMELMDLAMKDGRFRSXXXXXXXXXXXXXXXXXXXXX 634
+T K++ FAG+LV +L A Q+VS EL+DLAM++ FR
Sbjct: 602 LTPKDSNFAGDLVRNLEGANQHVSKELLDLAMQNAWFRKSRFKGGKGKKLNIGGGGLGYR 661
Query: 635 XXXXXFGLGIGYTPESNNTSSQSV----PSRSAA---VNSLKTGMMTQFRSNFVAASSNT 687
GLG NN + PS A + ++K +Q++S+FVAAS +
Sbjct: 662 ERP---GLGSENMDRGNNNVMSNYEAYKPSTGAMGDRLTAMKAAFQSQYKSHFVAASLSN 718
Query: 688 PSEGFNNSASAYANKRPALRGFVSGGSIGG----DVNGTQTT-GLTGFVSGGSIGG 738
G + + ++ +L + + G D T T G+ GF + G+I G
Sbjct: 719 QKAGSSAAGASGWTSAGSLNSVPTNSAQQGHNSPDSPITSATKGIPGFGNIGNISG 774
Score = 51 (23.0 bits), Expect = 4.9e-142, Sum P(2) = 4.9e-142
Identities = 23/115 (20%), Positives = 46/115 (40%)
Query: 662 SAAVNSLKTGMMTQFRSNFVAASS------NTPSEGFNNSASAYANKRPALRGFVSGGSI 715
+A++++ K G S + +A S N+ +G N+ S + + GF + G+I
Sbjct: 713 AASLSNQKAGSSAAGASGWTSAGSLNSVPTNSAQQGHNSPDSPITSATKGIPGFGNIGNI 772
Query: 716 GGDVNGTQTTGLTGF--VSGGSIGGEMSGTQTTXXXXXXXXXXXXRVNYGESAHQ 768
G + G G + G+ E +G R ++GE+ ++
Sbjct: 773 SGAPVTYPSAGAQGVNNTASGNNSREGTGGSNGKRERYTENRGSSRHSHGETGNR 827
>UNIPROTKB|E1BJD2 [details] [associations]
symbol:DDX42 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0008104 "protein localization" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0008104 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 OMA:QGVNNTA
GeneTree:ENSGT00610000086076 EMBL:DAAA02049325 IPI:IPI00701280
Ensembl:ENSBTAT00000028046 Uniprot:E1BJD2
Length = 946
Score = 1351 (480.6 bits), Expect = 4.4e-141, Sum P(2) = 4.4e-141
Identities = 301/715 (42%), Positives = 417/715 (58%)
Query: 38 YSHDNYEDT---DLDNIDYEDNDAAKAANDTGNGAEKEEIDPLDAFMEGIHXXXXXXXXX 94
Y D ED+ DL I E++ + + ++ ++ DPL+AFM +
Sbjct: 75 YFEDEEEDSSNVDLPYIPAENSPTRQQFHSKPVDSDSDD-DPLEAFMAEVEDQAARDMKR 133
Query: 95 XXXXXXXXXXDDDEEDPMESFLMAKKDVGLTLAADALRAGYDSDEEVYAAAKAVDAGMLD 154
D +E ++ A+ AG +EE L+
Sbjct: 134 LEEKDKERKNVKGIRDDIEE--EDDQEAYFRYMAENPTAGVVQEEE---------EDNLE 182
Query: 155 YDSDDNPVVVEKKKIEPIPALDHSLIDYEPFNKDFYQDSASISGMSEQDVMEYKKSLAIR 214
YDSD NP+ KK I+P+P +DHS IDY PF K+FY + I+ ++ Q +++ + L +R
Sbjct: 183 YDSDGNPIAPSKKIIDPLPPIDHSEIDYPPFEKNFYNEHEEITNLTPQQLIDLRHKLNLR 242
Query: 215 VSGFDVPRPVKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSG 274
VSG PRP +F GF QLMH I K Y +PT IQCQ +P+ LSGRD+IGIAKTGSG
Sbjct: 243 VSGAAPPRPGSSFAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTGSG 302
Query: 275 KTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYG 334
KTAAF+ PM++HIMDQ EL+ +GPI VI PTREL QI+ E K+F K++ +R AVYG
Sbjct: 303 KTAAFIWPMLIHIMDQKELEPGDGPIAVIVCPTRELCQQIHAECKRFGKAYNLRSVAVYG 362
Query: 335 GMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIR 394
G S +Q K L+ G EIV+ TPGRLID +K KA + RV+YLV DEADRMFD+GFE Q+R
Sbjct: 363 GGSMWEQAKALQEGAEIVVCTPGRLIDHVKKKATNLQRVSYLVFDEADRMFDMGFEYQVR 422
Query: 395 SIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDA 454
SI +RPDRQTLLFSAT +K+EKLAR+IL DP+RV G++G ANED+TQ+V ++ S +
Sbjct: 423 SIASHVRPDRQTLLFSATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEILHSGS 482
Query: 455 EKLPWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQ 514
K WL +L G VL+F +KK +E+ + L Q+G LHGD DQ+ R +++
Sbjct: 483 -KWNWLTRRLVEFTSSGSVLLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVIS 541
Query: 515 KFKSGVYHVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTL 574
FK VL+ATDVAARGLDI SIK+V+N+D+ARD+D H HRIGRTGRAG+K G AYTL
Sbjct: 542 DFKKKDIPVLVATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEK-GVAYTL 600
Query: 575 VTQKEARFAGELVNSLIAAGQNVSMELMDLAMKDGRFRSXXXXXXXXXXXXXXXXXXXXX 634
+T K++ FAG+LV +L A Q+VS EL+DLAM++ FR
Sbjct: 601 LTPKDSNFAGDLVRNLEGANQHVSKELLDLAMQNAWFRKSRFKGGKGKKLNIGGGGLGYR 660
Query: 635 XXXXXFGLGIGYTPESNNTSSQS-----VPSRSAA---VNSLKTGMMTQFRSNFVAASSN 686
GLG + +N + S PS A + ++K +Q++S+FVAAS +
Sbjct: 661 ERP---GLGSENSDRGSNNNVMSNYEAYKPSTGAMGDRLTAMKAAFQSQYKSHFVAASLS 717
Query: 687 TPSEGFNNSASAYANKRPALRGFVSGGSIGGDVN-----GTQTTGLTGFVSGGSI 736
G + + ++ +L + + G + + T G+ GF S G++
Sbjct: 718 NQKAGSSAAGASGWTSAGSLNSVPTNSAQQGHSSPDSPIASATKGIPGFGSPGNL 772
Score = 50 (22.7 bits), Expect = 4.4e-141, Sum P(2) = 4.4e-141
Identities = 24/115 (20%), Positives = 46/115 (40%)
Query: 662 SAAVNSLKTGMMTQFRSNFVAASS------NTPSEGFNNSASAYANKRPALRGFVSGGSI 715
+A++++ K G S + +A S N+ +G ++ S A+ + GF S G++
Sbjct: 713 AASLSNQKAGSSAAGASGWTSAGSLNSVPTNSAQQGHSSPDSPIASATKGIPGFGSPGNL 772
Query: 716 GGDVNGTQTTGLTGF--VSGGSIGGEMSGTQTTXXXXXXXXXXXXRVNYGESAHQ 768
+ G G + GS E +G R ++GES ++
Sbjct: 773 SSAPVTYPSAGAPGVNNTASGSNSREGTGGGNGKRERYTENRGGSRHSHGESGNR 827
>UNIPROTKB|F1NJ40 [details] [associations]
symbol:DDX42 "ATP-dependent RNA helicase DDX42"
species:9031 "Gallus gallus" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0008104 "protein localization" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0008104 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 IPI:IPI00576529 OMA:QGVNNTA
GeneTree:ENSGT00610000086076 EMBL:AADN02056764
Ensembl:ENSGALT00000000811 ArrayExpress:F1NJ40 Uniprot:F1NJ40
Length = 946
Score = 1379 (490.5 bits), Expect = 5.5e-141, P = 5.5e-141
Identities = 306/717 (42%), Positives = 416/717 (58%)
Query: 38 YSHDNYEDT---DLDNIDYEDNDAAKAANDTGNGAEKEEIDPLDAFMEGIHXXXXXXXXX 94
Y D ED DL I E++ + N ++ ++ DPL+AFM
Sbjct: 75 YFEDEEEDNSNVDLPYIPAENSPTRQQFNSKSADSDSDD-DPLEAFM------AESVEND 127
Query: 95 XXXXXXXXXXDDDEEDPMESFLMAKKDVGLTLAADALRAGYDSDEEVYAAAKAVDAGMLD 154
D D+E + + D+ +A Y ++ + + L+
Sbjct: 128 QAARDMKRLEDKDKEKKNAKGI--RDDIEEEDDQEAYFR-YMAENPTAGVVQEEEEDNLE 184
Query: 155 YDSDDNPVVVEKKKIEPIPALDHSLIDYEPFNKDFYQDSASISGMSEQDVMEYKKSLAIR 214
YDSD NP+ KK I+P+P +DHS I+Y PF K+FY + I+ ++ Q V+E + L +R
Sbjct: 185 YDSDGNPIAPSKKIIDPLPPIDHSEIEYPPFEKNFYDEHEEITSLTPQQVVELRHKLNLR 244
Query: 215 VSGFDVPRPVKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSG 274
VSG PRP +F GF QLMH I K Y +PT IQCQ +P+ +SGRD+IGIAKTGSG
Sbjct: 245 VSGAAPPRPGSSFAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVAMSGRDMIGIAKTGSG 304
Query: 275 KTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYG 334
KTAAF+ PM++HIMDQ EL+ +GPI VI PTREL QI+ E K+F K++ +R AVYG
Sbjct: 305 KTAAFIWPMLIHIMDQKELEPGDGPIAVIVCPTRELCQQIHSECKRFGKAYNLRSVAVYG 364
Query: 335 GMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIR 394
G S +Q K L+ G EIV+ TPGRLID +K KA + RVTYLV DEADRMFD+GFE Q+R
Sbjct: 365 GGSMWEQAKALQEGAEIVVCTPGRLIDHVKKKATNLQRVTYLVFDEADRMFDMGFEYQVR 424
Query: 395 SIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDA 454
SI +RPDRQTLLFSAT +K+EKLAR+IL DP+RV G++G ANED+TQ+V + PS
Sbjct: 425 SIASHVRPDRQTLLFSATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEIFPSGP 484
Query: 455 EKLPWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQ 514
K WL +L G VL+F +KK +E+ + L Q+ LHGD DQ+ R +++
Sbjct: 485 SKWNWLTRRLVEFTSSGSVLLFVTKKANAEELANNLKQEDHNLGLLHGDMDQSERNKVIS 544
Query: 515 KFKSGVYHVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTL 574
+FK +L+ATDVAARGLDI SIK+V+N+D+ARD+D H HRIGRTGRAG+K G AYTL
Sbjct: 545 EFKKKGIPILVATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEK-GVAYTL 603
Query: 575 VTQKEARFAGELVNSLIAAGQNVSMELMDLAMKDGRFRSXXXXXXXXXXXXXXXXXXXXX 634
+T K++ FAG+LV +L A Q+VS EL+DLAM++ FR
Sbjct: 604 LTPKDSNFAGDLVRNLEGANQHVSKELLDLAMQNPWFRKSRFKGGKGKKLNIGGGGLGYR 663
Query: 635 XXXXXFGLGIGYTPESNNTSSQS-----VPSRSAA---VNSLKTGMMTQFRSNFVAASSN 686
GLG + NN S S PS A + ++K +Q++S+FVAAS N
Sbjct: 664 ERP---GLGSESSDRGNNNSVMSNYEAYKPSSGAMGDRLTAMKAAFQSQYKSHFVAASLN 720
Query: 687 TPSEGFNNS-ASAYA-----NKRPALRGFVSGGSIGGDVNGTQTT-GLTGFVSGGSI 736
G + + AS + N P + + + T G+ GF S G++
Sbjct: 721 NQKTGSSAAGASGWTSAGSLNSVPTSSAQQNAANPDSPIAATAAAKGVPGFTSTGTL 777
>ZFIN|ZDB-GENE-050706-53 [details] [associations]
symbol:ddx42 "DEAD (Asp-Glu-Ala-Asp) box polypeptide
42" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
ZFIN:ZDB-GENE-050706-53 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00610000086076
EMBL:BX324157 IPI:IPI00774497 Ensembl:ENSDART00000076209
Uniprot:E7F401
Length = 910
Score = 1378 (490.1 bits), Expect = 7.0e-141, P = 7.0e-141
Identities = 317/732 (43%), Positives = 424/732 (57%)
Query: 10 GFNINRQTSYSFEQSQAPQRLYVPPSSRYSHDNYEDT-DLDNIDYEDNDAAK---AANDT 65
G+ N+Q S SF + + + ++ + D E T DL I E++ K +
Sbjct: 47 GYGKNQQLS-SFYKIGTKRANFDEENAYFEDDEEESTADLPYIPAENSPTRKQFQSGGGG 105
Query: 66 GNGAEKEEIDPLDAFMEGIHXXXXXXXXXX-------XXXXXXXXXDD-DEEDPMESFLM 117
G G E DPLDAFM + DD +EED E++
Sbjct: 106 GGGGSDSEDDPLDAFMAEVEDQAAKDDGQVRVCHDYISISFSRGIRDDIEEEDDQEAYFR 165
Query: 118 AKKDVGLTLAADALRAGYDSDEEVYAAAKAVDAGMLDYDSDDNPVVVEKKKI-EPIPALD 176
A+ AG +EE +DYDSD NP+ KKI P+P +D
Sbjct: 166 --------YMAENPTAGLTQEEEEEE---------VDYDSDGNPIAPTTKKIIMPLPPID 208
Query: 177 HSLIDYEPFNKDFYQDSASISGMSEQDVMEYKKSLAIRVSGFDVPRPVKTFEDCGFSTQL 236
HS IDY PF K+FY + IS ++ +V+E ++ L ++VSG P+P +F GF QL
Sbjct: 209 HSEIDYSPFEKNFYNEHEEISSLTGAEVVELRRKLNLKVSGAAPPKPATSFAHFGFDEQL 268
Query: 237 MHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKE 296
MH I K Y +PT IQCQ +PI LSGRD IGIAKTGSGKTAAF+ P++VHIMDQ EL+
Sbjct: 269 MHQIRKSEYTQPTPIQCQGVPIALSGRDAIGIAKTGSGKTAAFIWPILVHIMDQKELEPG 328
Query: 297 EGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATP 356
EGPI VI PTREL QI+ E K+F K++G+R AVYGG S +Q K L+ G EIV+ TP
Sbjct: 329 EGPIAVIVCPTRELCQQIHAECKRFGKAYGLRSVAVYGGGSMWEQAKALQEGAEIVVCTP 388
Query: 357 GRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMPRK 416
GRLID +K KA ++ RVT+LV DEADRMFD+GFE Q+RSI +RPDRQTLLFSAT +K
Sbjct: 389 GRLIDHVKKKATSLQRVTFLVFDEADRMFDMGFEYQVRSIASHVRPDRQTLLFSATFRKK 448
Query: 417 VEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEKLPGMIDDGDVLVF 476
+EKLAR+IL DP+RV G++G ANEDITQ+V V+ S +K WL +L G VLVF
Sbjct: 449 IEKLARDILVDPIRVVQGDIGEANEDITQIVEVLQSGQDKWGWLTRRLVEFTSAGSVLVF 508
Query: 477 ASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDI 536
+KK +E+ + L Q+G+ LHGD DQ+ R +++ FK VL+ATDVAARGLDI
Sbjct: 509 VTKKANCEELATNLIQEGYSLGLLHGDMDQSERNKVIADFKKKNLPVLVATDVAARGLDI 568
Query: 537 KSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELVNSLIAAGQN 596
SI++VVN+D+ARD+D H HRIGRTGRAG+K G AYTL+T K+ FAG+LV +L A Q+
Sbjct: 569 PSIRTVVNYDVARDIDTHTHRIGRTGRAGEK-GVAYTLLTTKDTSFAGDLVRNLEGANQS 627
Query: 597 VSMELMDLAMKDGRFRSXXXXXXXXXXXXXXXXXXXXXXXXXXFGLGIGYTPESNNTSSQ 656
VS +L+DLAM++ FR GLG + S + +
Sbjct: 628 VSKDLLDLAMQNPWFRKSRFKGGKGKKINIGGGGLGYRERP---GLGSECSERSGGSIAA 684
Query: 657 SV-------PSRSAA---VNSLKTGMMTQFRSNFVAASSNTPSEGFNNSASAYANKRPAL 706
++ PS A +++LK Q++++FVAAS P +S+S+ +L
Sbjct: 685 ALGNYETFKPSTGAMGDRMSALKQAFQAQYKNHFVAASGVPPKLTTKSSSSSGWTSAGSL 744
Query: 707 RGFVSGGSIGGD 718
+G G D
Sbjct: 745 SSLPTGAPEGPD 756
>UNIPROTKB|E2RFF1 [details] [associations]
symbol:DDX42 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008104 "protein localization" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0008104 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 OMA:QGVNNTA
GeneTree:ENSGT00610000086076 EMBL:AAEX03006359
Ensembl:ENSCAFT00000020366 Uniprot:E2RFF1
Length = 933
Score = 1359 (483.5 bits), Expect = 7.1e-141, Sum P(2) = 7.1e-141
Identities = 302/697 (43%), Positives = 410/697 (58%)
Query: 38 YSHDNYEDT---DLDNIDYEDNDAAKAANDTGNGAEKEEIDPLDAFMEGIHXXXXXXXXX 94
Y D ED+ DL I E++ + + ++ ++ DPL+AFM +
Sbjct: 75 YFEDEEEDSSNVDLPYIPAENSPTRQQFHSKPADSDSDD-DPLEAFMAEVEDQAARDMKR 133
Query: 95 XXXXXXXXXXDDDEEDPMESFLMAKKDVGLTLAADALRAGYDSDEEVYAAAKAVDAGMLD 154
D +E ++ A+ AG +EE L+
Sbjct: 134 LEEKDKERKNVKGIRDDIEE--EDDQEAYFRYMAENPTAGVVQEEE---------EDNLE 182
Query: 155 YDSDDNPVVVEKKKIEPIPALDHSLIDYEPFNKDFYQDSASISGMSEQDVMEYKKSLAIR 214
YDSD NP+ KK I+P+P +DHS IDY PF K+FY + I+ ++ Q +++ + L +R
Sbjct: 183 YDSDGNPIAPSKKIIDPLPPIDHSEIDYPPFEKNFYNEHEEITNLTPQQLIDLRHKLNLR 242
Query: 215 VSGFDVPRPVKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSG 274
VSG PRP +F GF QLMH I K Y +PT IQCQ +P+ LSGRD+IGIAKTGSG
Sbjct: 243 VSGAAPPRPGSSFAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTGSG 302
Query: 275 KTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYG 334
KTAAF+ PM++HIMDQ EL+ +GPI VI PTREL QI+ E K+F K++ +R AVYG
Sbjct: 303 KTAAFIWPMLIHIMDQKELEPGDGPIAVIVCPTRELCQQIHAECKRFGKAYNLRSVAVYG 362
Query: 335 GMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIR 394
G S +Q K L+ G EIV+ TPGRLID +K KA + RV+YLV DEADRMFD+GFE Q+R
Sbjct: 363 GGSMWEQAKALQEGAEIVVCTPGRLIDHVKKKATNLQRVSYLVFDEADRMFDMGFEYQVR 422
Query: 395 SIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDA 454
SI +RPDRQTLLFSAT +K+EKLAR+IL DP+RV G++G ANED+TQ+V ++ S
Sbjct: 423 SIASHVRPDRQTLLFSATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEILHSGP 482
Query: 455 EKLPWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQ 514
K WL +L G VL+F +KK +E+ + L Q+G LHGD DQ+ R +++
Sbjct: 483 SKWNWLTRRLVEFTSSGSVLLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVIS 542
Query: 515 KFKSGVYHVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTL 574
FK VL+ATDVAARGLDI SIK+V+N+D+ARD+D H HRIGRTGRAG+K G AYTL
Sbjct: 543 DFKKKDIPVLVATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEK-GVAYTL 601
Query: 575 VTQKEARFAGELVNSLIAAGQNVSMELMDLAMKDGRFRSXXXXXXXXXXXXXXXXXXXXX 634
+T K++ FAG+LV +L A Q+VS EL+DLAM++ FR
Sbjct: 602 LTPKDSNFAGDLVRNLEGANQHVSKELLDLAMQNAWFRKSRFKGGKGKKLNIGGGGLGYR 661
Query: 635 XXXXXFGLGIGYTPESNNTSSQS-----VPSRSAA--VNSLKTGMMTQFRSNFVAASSNT 687
GLG T NN + S P+ + + ++K +Q++S+FVAAS +
Sbjct: 662 ERP---GLGSENTDRGNNNNVMSNYEAYKPTGAMGDRLTAMKAAFQSQYKSHFVAASLSN 718
Query: 688 PSEGFNNSASAYANKRPALRGFVSGGSIGG-DVNGTQ 723
G S++A A+ G+ S GS+ N Q
Sbjct: 719 QKAG---SSAAGAS------GWTSAGSLNSVPTNSAQ 746
Score = 40 (19.1 bits), Expect = 7.1e-141, Sum P(2) = 7.1e-141
Identities = 9/28 (32%), Positives = 15/28 (53%)
Query: 709 FVSGGSIGGDVNGTQTTGLTGFVSGGSI 736
FV+ S+ G+ G +G+ S GS+
Sbjct: 711 FVAA-SLSNQKAGSSAAGASGWTSAGSL 737
>UNIPROTKB|Q5F485 [details] [associations]
symbol:DDX42 "ATP-dependent RNA helicase DDX42"
species:9031 "Gallus gallus" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008104 "protein
localization" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0008104 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 HSSP:P09052
EMBL:AJ851415 IPI:IPI00576529 RefSeq:NP_001026097.1
UniGene:Gga.5156 ProteinModelPortal:Q5F485 STRING:Q5F485
GeneID:419959 KEGG:gga:419959 CTD:11325 HOGENOM:HOG000268793
HOVERGEN:HBG081425 InParanoid:Q5F485 KO:K12835 OrthoDB:EOG47WNN9
NextBio:20822943 Uniprot:Q5F485
Length = 944
Score = 1377 (489.8 bits), Expect = 8.9e-141, P = 8.9e-141
Identities = 307/717 (42%), Positives = 414/717 (57%)
Query: 38 YSHDNYEDT---DLDNIDYEDNDAAKAANDTGNGAEKEEIDPLDAFMEGIHXXXXXXXXX 94
Y D ED DL I E++ + N ++ ++ DPL+AFM +
Sbjct: 75 YFEDEEEDNSNVDLPYIPAENSPTRQQFNSKSADSDSDD-DPLEAFMAEVEDQAARDMKR 133
Query: 95 XXXXXXXXXXDDDEEDPMESFLMAKKDVGLTLAADALRAGYDSDEEVYAAAKAVDAGMLD 154
D +E ++ A+ AG +EE L+
Sbjct: 134 LEDKDKEKKNAKGIRDDIEE--EDDQEAYFRYMAENPTAGVVQEEE---------EDNLE 182
Query: 155 YDSDDNPVVVEKKKIEPIPALDHSLIDYEPFNKDFYQDSASISGMSEQDVMEYKKSLAIR 214
YDSD NP+ KK I+P+P +DHS I+Y PF K+FY + I+ ++ Q V+E + L +R
Sbjct: 183 YDSDGNPIAPSKKIIDPLPPIDHSEIEYPPFEKNFYDEHEEITSLTPQQVVELRHKLNLR 242
Query: 215 VSGFDVPRPVKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSG 274
VSG PRP +F GF QLMH I K Y +PT IQCQ +P+ +SGRD+IGIAKTGSG
Sbjct: 243 VSGAAPPRPGSSFARFGFDEQLMHQIRKSEYTQPTPIQCQGVPVAMSGRDMIGIAKTGSG 302
Query: 275 KTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYG 334
KTAAF+ PM++HIMDQ EL+ +GPI VI PTREL QI+ E K+F K++ +R AVYG
Sbjct: 303 KTAAFIWPMLIHIMDQKELEPGDGPIAVIVCPTRELCQQIHSECKRFGKAYNLRSVAVYG 362
Query: 335 GMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIR 394
G S +Q K L+ G EIV+ TPGRLID +K KA + RVTYLV DEADRMFD+GFE Q+R
Sbjct: 363 GGSMWEQAKALQEGAEIVVCTPGRLIDHVKKKATNLQRVTYLVFDEADRMFDMGFEYQVR 422
Query: 395 SIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDA 454
SI +RPDRQTLLFSAT +K+EKLAR+IL DP+RV G++G ANED+TQ+V + PS
Sbjct: 423 SIASHVRPDRQTLLFSATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEIFPSGP 482
Query: 455 EKLPWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQ 514
K WL +L G VL+F +KK +E+ + L Q+ LHGD DQ+ R +++
Sbjct: 483 SKWNWLTRRLVEFTSSGSVLLFVTKKANAEELANNLKQEDHNLGLLHGDMDQSERNKVIS 542
Query: 515 KFKSGVYHVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTL 574
+FK +L+ATDVAARGLDI SIK+V+N+D+ARD+D H HRIGRTGRAG+K G AYTL
Sbjct: 543 EFKKKGIPILVATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEK-GVAYTL 601
Query: 575 VTQKEARFAGELVNSLIAAGQNVSMELMDLAMKDGRFRSXXXXXXXXXXXXXXXXXXXXX 634
+T K++ FAG+LV +L A Q+VS EL+DLAM++ FR
Sbjct: 602 LTPKDSNFAGDLVRNLEGANQHVSKELLDLAMQNPWFRKSRFKGGKGKKPNIGGGGLGYR 661
Query: 635 XXXXXFGLGIGYTPESNNTSSQS-----VPSRSAA---VNSLKTGMMTQFRSNFVAASSN 686
GLG + NN S S PS A + ++K +Q++S+FVAAS N
Sbjct: 662 ERP---GLGSESSDRGNNNSVMSNYEAYKPSSGAMGDRLTAMKAAFQSQYKSHFVAASLN 718
Query: 687 TPSEGFNNS-ASAYA-----NKRPALRGFVSGGSIGGDVNGTQTT-GLTGFVSGGSI 736
G + + AS + N P + + + T G+ GF S G++
Sbjct: 719 NQKTGSSAAGASGWTSAGSLNSVPTSSAQQNAANPDSPIAATAAAKGVPGFTSTGTL 775
>DICTYBASE|DDB_G0288501 [details] [associations]
symbol:ddx42 "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
dictyBase:DDB_G0288501 GO:GO:0005524 GO:GO:0005634
GenomeReviews:CM000154_GR GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:AAFI02000112 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 HSSP:P09052
KO:K12835 RefSeq:XP_636700.1 ProteinModelPortal:Q54IV3
STRING:Q54IV3 EnsemblProtists:DDB0233432 GeneID:8626657
KEGG:ddi:DDB_G0288501 OMA:DRDKRGG Uniprot:Q54IV3
Length = 986
Score = 1375 (489.1 bits), Expect = 1.5e-140, P = 1.5e-140
Identities = 307/725 (42%), Positives = 431/725 (59%)
Query: 32 VPPSSRY-----SHDNYEDTDLDNIDYEDNDAAKAANDTGNGAEKEEIDPLDAFMEGIHX 86
VPP S S N+E+ +N + +N+ ++ + N E +EIDPLDAFME ++
Sbjct: 104 VPPKSSMTTLNKSPPNFENASSNNNNNNNNNNQESDSKNQNEDEDDEIDPLDAFMENVNA 163
Query: 87 XXXXXXXXXXXX------XXXXXXDD-DEEDPMESFLMAKKDVGLTLAADALRAGYDSDE 139
DD D ED E F ++ LA + + D D
Sbjct: 164 QAAIDNSKSIEKGQQQQQSLKSKRDDIDNEDDEEIFYKLRQK---QLANKSSKQQQDDDV 220
Query: 140 EVYAAAKAVDAGMLDYDSDDNPVVVEKKKIEPIPALDHSLIDYEPFNKDFYQDSASISGM 199
+ Y++ D D +S N K+ IEP+P +DHS +Y FNK FY++ I+ +
Sbjct: 221 D-YSSLDDDDGYFDDEESLKNGQSKGKRIIEPLPPIDHSKEEYIEFNKIFYEEHPDIANL 279
Query: 200 SEQDVMEYKKSLAIRVSGFDVPRPVKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPII 259
+E+ V E +K+L IR++G D+ PV +F GF L+ AI+KQ E PT IQ QA+PI
Sbjct: 280 TEEQVFEIRKNLDIRMTGTDLINPVTSFGHYGFDDILLQAIAKQSIETPTPIQKQAIPIA 339
Query: 260 LSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETK 319
LSGRD+I IAKTGSGKTA F+ P I HIMDQP L+K +GPI + APTRELAHQIYLET
Sbjct: 340 LSGRDLIAIAKTGSGKTATFIWPSISHIMDQPYLEKGDGPIALFLAPTRELAHQIYLETL 399
Query: 320 KFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLD 379
K++K ++ + +YGG+SK Q KELKAGCEI++ATPGRLIDM+K+KA ++RV+YLVLD
Sbjct: 400 KYSKYFKLKTTVLYGGVSKQQQCKELKAGCEIIVATPGRLIDMIKLKATKLNRVSYLVLD 459
Query: 380 EADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMA 439
EAD+MFD GF PQ+ SIV +RPDRQTLLFSAT VE+ AR ILSDP+++++G +G A
Sbjct: 460 EADKMFDFGFGPQVLSIVNHVRPDRQTLLFSATFKPNVEEFARTILSDPIKISIGMIGSA 519
Query: 440 NEDITQVVHVIPSDAEKLPWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAA 499
N DITQ+V V+ SD++K WL +L ++ G VL+F S K V+++ S L + GF+
Sbjct: 520 NSDITQIVQVLKSDSDKWNWLTNQLALLLSQGSVLIFVSTKVAVEQLSSNLTKFGFQTCT 579
Query: 500 LHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIG 559
LHGDK+Q R + +Q FK G ++LIATDVAARGLDI IK+VVN+D +RD++ H HRIG
Sbjct: 580 LHGDKNQIERSQTIQTFKEGKINILIATDVAARGLDIPLIKNVVNYDTSRDIESHTHRIG 639
Query: 560 RTGRAGDKDGTAYTLVTQKEARFAGELVNSLIAAGQNVSMELMDLAMKDGRFRSXXXXXX 619
RTGRAG+ G AYTL+T K+ F+ +L+ +L +A Q V EL+D+AM + F+
Sbjct: 640 RTGRAGNT-GVAYTLITPKDIHFSVDLIKNLESASQFVPPELIDVAMNNPHFKRERGGGG 698
Query: 620 XXXXXXXXXXXXXXXXXXXXFGLGIGYTP--ESNNTSSQS--VPSRSAAVNSLKTGMMTQ 675
G G+ + +S+ + SQ+ +P++S L T
Sbjct: 699 GGSNRGRGRGGGGVGYRRNSRGGGVAFNSNRDSSRSDSQNKFIPAQSVEGGRLFNPNNTD 758
Query: 676 FR--SNFVAASSNTPSEGFNNSASAYANKRPALRGFVSGGSIGGDVNGTQTTGLTGFVSG 733
+N S N ++ F+N+ S +N R ++ S + N T +G + F +
Sbjct: 759 NSEINNENEKSINNENK-FSNNNSGSSNDRNSIN--YRNNSFNNNSNNTNNSGNSNFNNS 815
Query: 734 GSIGG 738
S G
Sbjct: 816 NSNNG 820
>MGI|MGI:1919297 [details] [associations]
symbol:Ddx42 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 42"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISO] [GO:0005737 "cytoplasm"
evidence=ISO] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008104 "protein localization" evidence=ISO]
[GO:0016787 "hydrolase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 MGI:MGI:1919297
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0008104
GO:GO:0016607 GO:GO:0003723 GO:GO:0015030 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 EMBL:AL604045 HSSP:P09052
CTD:11325 HOGENOM:HOG000268793 HOVERGEN:HBG081425 KO:K12835
OrthoDB:EOG47WNN9 OMA:QGVNNTA ChiTaRS:DDX42 EMBL:AK007805
EMBL:AK049311 EMBL:AK169816 EMBL:AK171730 EMBL:BC043036
IPI:IPI00329839 IPI:IPI00830514 RefSeq:NP_082350.3 UniGene:Mm.41367
ProteinModelPortal:Q810A7 SMR:Q810A7 IntAct:Q810A7 STRING:Q810A7
PhosphoSite:Q810A7 PaxDb:Q810A7 PRIDE:Q810A7
Ensembl:ENSMUST00000021046 GeneID:72047 KEGG:mmu:72047
UCSC:uc007lyk.2 UCSC:uc007lyl.2 GeneTree:ENSGT00610000086076
InParanoid:Q810A7 NextBio:335308 Bgee:Q810A7 CleanEx:MM_DDX42
Genevestigator:Q810A7 Uniprot:Q810A7
Length = 929
Score = 1367 (486.3 bits), Expect = 1.0e-139, P = 1.0e-139
Identities = 307/715 (42%), Positives = 415/715 (58%)
Query: 38 YSHDNYEDT---DLDNIDYEDNDAAKAANDTGNGAEKEEIDPLDAFMEGIHXXXXXXXXX 94
Y D ED+ DL I E++ + + ++ ++ DPL+AFM +
Sbjct: 75 YFEDEEEDSSNVDLPYIPAENSPTRQQFHSKPADSDSDD-DPLEAFMAEVEDQAARDMKR 133
Query: 95 XXXXXXXXXXDDDEEDPMESFLMAKKDVGLTLAADALRAGYDSDEEVYAAAKAVDAGMLD 154
D +E ++ A+ AG +EE L+
Sbjct: 134 LEEKDKERKNVKGIRDDIEE--EDDQEAYFRYMAENPTAGVVQEEE---------EDNLE 182
Query: 155 YDSDDNPVVVEKKKIEPIPALDHSLIDYEPFNKDFYQDSASISGMSEQDVMEYKKSLAIR 214
YDSD NP+ KK I+P+P +DHS IDY PF K+FY + I+ ++ Q +++ + L +R
Sbjct: 183 YDSDGNPIAPSKKIIDPLPPIDHSEIDYPPFEKNFYNEHEEITNLTPQQLIDLRHKLNLR 242
Query: 215 VSGFDVPRPVKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSG 274
VSG PRP +F GF QLMH I K Y +PT IQCQ +P+ LSGRD+IGIAKTGSG
Sbjct: 243 VSGAAPPRPGSSFAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTGSG 302
Query: 275 KTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYG 334
KTAAF+ PM++HIMDQ EL+ +GPI VI PTREL QI+ E K+F K++ +R AVYG
Sbjct: 303 KTAAFIWPMLIHIMDQKELEPGDGPIAVIVCPTRELCQQIHAECKRFGKAYNLRSVAVYG 362
Query: 335 GMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIR 394
G S +Q K L+ G EIV+ TPGRLID +K KA + RV+YLV DEADRMFD+GFE Q+R
Sbjct: 363 GGSMWEQAKALQEGAEIVVCTPGRLIDHVKKKATNLQRVSYLVFDEADRMFDMGFEYQVR 422
Query: 395 SIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDA 454
SI +RPDRQTLLFSAT +K+EKLAR+IL DP+RV G++G ANED+TQ+V ++ S
Sbjct: 423 SIASHVRPDRQTLLFSATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEILHSGP 482
Query: 455 EKLPWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQ 514
K WL +L G VL+F +KK +E+ S L Q+G LHGD DQ+ R +++
Sbjct: 483 SKWNWLTRRLVEFTSSGSVLLFVTKKANAEELASNLKQEGHNLGLLHGDMDQSERNKVIS 542
Query: 515 KFKSGVYHVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTL 574
FK VL+ATDVAARGLDI SIK+V+N+D+ARD+D H HRIGRTGRAG+K G AYTL
Sbjct: 543 DFKKKDIPVLVATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEK-GVAYTL 601
Query: 575 VTQKEARFAGELVNSLIAAGQNVSMELMDLAMKDGRFRSXXXXXXXXXXXXXXXXXXXXX 634
+T K++ FAG+LV +L A Q+VS EL+DLAM++ FR
Sbjct: 602 LTPKDSNFAGDLVRNLEGANQHVSKELLDLAMQNAWFRKSRFKGGKGKKLNIGGGGLGYR 661
Query: 635 XXXXXFGLGIGYTPESNNTSSQS-----VPSRSAA---VNSLKTGMMTQFRSNFVAAS-S 685
GLG + NN + S PS A + ++K +Q++S+FVAAS S
Sbjct: 662 ERP---GLGSENSDRGNNNNVMSNYEAYKPSTGAMGDRLTAMKAAFQSQYKSHFVAASLS 718
Query: 686 N----TPSEGFNNSASAYANKRPALRGFVSGGSIGGDVNGTQTTGLTGFVSGGSI 736
N T S G + SA + G + + + T + GF + G+I
Sbjct: 719 NQKAGTSSAGASGWTSAGSLNSVPTNSAQQGHNSPDNPMTSSTKNIPGFNNSGNI 773
>UNIPROTKB|Q86XP3 [details] [associations]
symbol:DDX42 "ATP-dependent RNA helicase DDX42"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0015030 "Cajal body"
evidence=IEA] [GO:0016607 "nuclear speck" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0008104 "protein
localization" evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 EMBL:AF083255 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0008104 GO:GO:0016607 GO:GO:0003723
EMBL:CH471109 GO:GO:0015030 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HSSP:P09052 CTD:11325 HOVERGEN:HBG081425 KO:K12835
OrthoDB:EOG47WNN9 EMBL:AB036090 EMBL:AK292908 EMBL:AC015651
EMBL:BC008208 EMBL:BC015505 EMBL:BC078667 EMBL:BC093081
EMBL:AL050096 EMBL:BK000566 IPI:IPI00409671 IPI:IPI00829889
PIR:T08745 RefSeq:NP_031398.2 RefSeq:NP_987095.1 UniGene:Hs.702010
ProteinModelPortal:Q86XP3 SMR:Q86XP3 IntAct:Q86XP3
MINT:MINT-1427725 STRING:Q86XP3 PhosphoSite:Q86XP3 DMDM:74750541
PaxDb:Q86XP3 PRIDE:Q86XP3 Ensembl:ENST00000359353
Ensembl:ENST00000389924 Ensembl:ENST00000457800
Ensembl:ENST00000578681 Ensembl:ENST00000583590 GeneID:11325
KEGG:hsa:11325 UCSC:uc002jbu.3 GeneCards:GC17P061851
HGNC:HGNC:18676 HPA:HPA023447 HPA:HPA023571 HPA:HPA025941
MIM:613369 neXtProt:NX_Q86XP3 PharmGKB:PA134875761
InParanoid:Q86XP3 OMA:QGVNNTA ChiTaRS:DDX42 GenomeRNAi:11325
NextBio:43019 ArrayExpress:Q86XP3 Bgee:Q86XP3 CleanEx:HS_DDX42
Genevestigator:Q86XP3 Uniprot:Q86XP3
Length = 938
Score = 1360 (483.8 bits), Expect = 5.6e-139, P = 5.6e-139
Identities = 309/727 (42%), Positives = 418/727 (57%)
Query: 38 YSHDNYEDT---DLDNIDYEDNDAAKAANDTGNGAEKEEIDPLDAFMEGIHXXXXXXXXX 94
Y D ED+ DL I E++ + + ++ ++ DPL+AFM +
Sbjct: 75 YFEDEEEDSSNVDLPYIPAENSPTRQQFHSKPVDSDSDD-DPLEAFMAEVEDQAARDMKR 133
Query: 95 XXXXXXXXXXDDDEEDPMESFLMAKKDVGLTLAADALRAGYDSDEEVYAAAKAVDAGMLD 154
D +E ++ A+ AG +EE L+
Sbjct: 134 LEEKDKERKNVKGIRDDIEE--EDDQEAYFRYMAENPTAGVVQEEE---------EDNLE 182
Query: 155 YDSDDNPVVVEKKKIEPIPALDHSLIDYEPFNKDFYQDSASISGMSEQDVMEYKKSLAIR 214
YDSD NP+ KK I+P+P +DHS IDY PF K+FY + I+ ++ Q +++ + L +R
Sbjct: 183 YDSDGNPIAPTKKIIDPLPPIDHSEIDYPPFEKNFYNEHEEITNLTPQQLIDLRHKLNLR 242
Query: 215 VSGFDVPRPVKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSG 274
VSG PRP +F GF QLMH I K Y +PT IQCQ +P+ LSGRD+IGIAKTGSG
Sbjct: 243 VSGAAPPRPGSSFAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTGSG 302
Query: 275 KTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYG 334
KTAAF+ PM++HIMDQ EL+ +GPI VI PTREL QI+ E K+F K++ +R AVYG
Sbjct: 303 KTAAFIWPMLIHIMDQKELEPGDGPIAVIVCPTRELCQQIHAECKRFGKAYNLRSVAVYG 362
Query: 335 GMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIR 394
G S +Q K L+ G EIV+ TPGRLID +K KA + RV+YLV DEADRMFD+GFE Q+R
Sbjct: 363 GGSMWEQAKALQEGAEIVVCTPGRLIDHVKKKATNLQRVSYLVFDEADRMFDMGFEYQVR 422
Query: 395 SIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDA 454
SI +RPDRQTLLFSAT +K+EKLAR+IL DP+RV G++G ANED+TQ+V ++ S
Sbjct: 423 SIASHVRPDRQTLLFSATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEILHSGP 482
Query: 455 EKLPWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQ 514
K WL +L G VL+F +KK +E+ + L Q+G LHGD DQ+ R +++
Sbjct: 483 SKWNWLTRRLVEFTSSGSVLLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVIS 542
Query: 515 KFKSGVYHVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTL 574
FK VL+ATDVAARGLDI SIK+V+N+D+ARD+D H HRIGRTGRAG+K G AYTL
Sbjct: 543 DFKKKDIPVLVATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEK-GVAYTL 601
Query: 575 VTQKEARFAGELVNSLIAAGQNVSMELMDLAMKDGRFRSXXXXXXXXXXXXXXXXXXXXX 634
+T K++ FAG+LV +L A Q+VS EL+DLAM++ FR
Sbjct: 602 LTPKDSNFAGDLVRNLEGANQHVSKELLDLAMQNAWFRKSRFKGGKGKKLNIGGGGLGYR 661
Query: 635 XXXXXFGLGIGYTPESNNTSSQSV----PSRSAA---VNSLKTGMMTQFRSNFVAASSNT 687
GLG NN + PS A + ++K +Q++S+FVAAS +
Sbjct: 662 ERP---GLGSENMDRGNNNVMSNYEAYKPSTGAMGDRLTAMKAAFQSQYKSHFVAASLSN 718
Query: 688 PSEGFNNS-ASAYA-----NKRP---ALRGFVSGGS-IGGDVNGTQTTGLTGFVSGGSIG 737
G + + AS + N P A +G S S + G G TG +SG +
Sbjct: 719 QKAGSSAAGASGWTSAGSLNSVPTNSAQQGHNSPDSPVTSAAKGIPGFGNTGNISGAPVT 778
Query: 738 GEMSGTQ 744
+G Q
Sbjct: 779 YPSAGAQ 785
>RGD|1304909 [details] [associations]
symbol:Ddx42 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 42"
species:10116 "Rattus norvegicus" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA;ISO] [GO:0005737 "cytoplasm"
evidence=IEA;ISO] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008104 "protein localization" evidence=IEA;ISO]
[GO:0005730 "nucleolus" evidence=ISO] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 RGD:1304909
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0008104
GO:GO:0003676 EMBL:CH473948 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
CTD:11325 KO:K12835 OrthoDB:EOG47WNN9 GeneTree:ENSGT00610000086076
IPI:IPI00361283 RefSeq:NP_001100529.1 UniGene:Rn.154550
Ensembl:ENSRNOT00000013046 GeneID:303607 KEGG:rno:303607
UCSC:RGD:1304909 NextBio:651732 Uniprot:D4A031
Length = 929
Score = 1353 (481.3 bits), Expect = 3.1e-138, P = 3.1e-138
Identities = 306/716 (42%), Positives = 415/716 (57%)
Query: 38 YSHDNYEDT---DLDNIDYEDNDAAKAANDTGNGAEKEEIDPLDAFMEGIHXXXXXXXXX 94
Y D ED+ DL I E++ + ++ ++ DPL+AFM +
Sbjct: 75 YFEDEEEDSSNVDLPYIPAENSPTRQQFRSKPADSDSDD-DPLEAFMAEVEDQAARDMKR 133
Query: 95 XXXXXXXXXXDDDEEDPMESFLMAKKDVGLTLAADALRAGYDSDEEVYAAAKAVDAGMLD 154
D +E ++ A+ AG +EE L+
Sbjct: 134 LEEKDKERKNVKGIRDDIEE--EDDQEAYFRYMAENPTAGVVQEEE---------EDNLE 182
Query: 155 YDSDDNPVVVEKKKIEPIPALDHSLIDYEPFNKDFYQDSASISGMSEQDVMEYKKSLAIR 214
YDSD NP+ KK I+P+P +DHS IDY PF K+FY + I+ ++ Q +++ + L +R
Sbjct: 183 YDSDGNPIAPSKKIIDPLPPIDHSEIDYPPFEKNFYNEHEEITNLTPQQLIDLRHKLNLR 242
Query: 215 VSGFDVPRPVKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSG 274
VSG PRP +F GF QLMH I K Y +PT IQCQ +P+ LSGRD+IGIAKTGSG
Sbjct: 243 VSGAAPPRPGSSFAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTGSG 302
Query: 275 KTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYG 334
KTAAF+ PM++HIMDQ EL+ +GPI VI PTREL QI+ E K+F K++ +R AVYG
Sbjct: 303 KTAAFIWPMLIHIMDQKELEPGDGPIAVIVCPTRELCQQIHAECKRFGKAYNLRSVAVYG 362
Query: 335 GMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIR 394
G S +Q K L+ G EIV+ TPGRLID +K KA + RV+YLV DEADRMFD+GFE Q+R
Sbjct: 363 GGSMWEQAKALQEGAEIVVCTPGRLIDHVKKKATNLQRVSYLVFDEADRMFDMGFEYQVR 422
Query: 395 SIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDA 454
SI +RPDRQTLLFSAT +K+EKLAR+IL DP+RV G++G ANED+TQ+V ++ S
Sbjct: 423 SIASHVRPDRQTLLFSATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEILHSGP 482
Query: 455 EKLPWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQ 514
K WL +L G VL+F +KK +E+ + L Q+G LHGD DQ+ R +++
Sbjct: 483 SKWNWLTRRLVEFTSSGSVLLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVIL 542
Query: 515 KFKSGVYHVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTL 574
FK VL+ATDVAARGLDI SIK+V+N+D+ARD+D H HRIGRTGRAG+K G AYTL
Sbjct: 543 DFKKKDIPVLVATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEK-GVAYTL 601
Query: 575 VTQKEARFAGELVNSLIAAGQNVSMELMDLAMKDGRFRSXXXXXXXXXXXXXXXXXXXXX 634
+T K++ FAG+LV +L A Q+VS EL+DLAM++ FR
Sbjct: 602 LTPKDSNFAGDLVRNLEGANQHVSKELLDLAMQNAWFRKSRFKGGKGKKLNIGGGGLGYR 661
Query: 635 XXXXXFGLGIGYTPESNNTSSQS-----VPSRSAA---VNSLKTGMMTQFRSNFVAAS-S 685
GLG + +N + S PS A + ++K +Q++S+FVAAS S
Sbjct: 662 ERP---GLGSENSDRGSNNNVMSNYEAYKPSTGAMGDRLTAMKAAFQSQYKSHFVAASLS 718
Query: 686 N----TPSEGFNNSASAYA-NKRPALRGFVSGGSIGGDVNGTQTTGLTGFVSGGSI 736
N T + G + SA + N P S + + T + GF + G+I
Sbjct: 719 NQKAGTSTAGASGWTSAGSLNSVPTNSAQQGHNSPDNPITSS-TKNIPGFNNSGNI 773
>UNIPROTKB|F1P0H1 [details] [associations]
symbol:DDX42 "ATP-dependent RNA helicase DDX42"
species:9031 "Gallus gallus" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00610000086076 EMBL:AADN02056764
IPI:IPI00819332 Ensembl:ENSGALT00000040437 ArrayExpress:F1P0H1
Uniprot:F1P0H1
Length = 703
Score = 1347 (479.2 bits), Expect = 1.3e-137, P = 1.3e-137
Identities = 292/651 (44%), Positives = 386/651 (59%)
Query: 38 YSHDNYEDT---DLDNIDYEDNDAAKAANDTGNGAEKEEIDPLDAFMEGIHXXXXXXXXX 94
Y D ED DL I E++ + N ++ ++ DPL+AFM +
Sbjct: 70 YFEDEEEDNSNVDLPYIPAENSPTRQQFNSKSADSDSDD-DPLEAFMAEVEDQAARDMKR 128
Query: 95 XXXXXXXXXXDDDEEDPMESFLMAKKDVGLTLAADALRAGYDSDEEVYAAAKAVDAGMLD 154
D +E ++ A+ AG +EE L+
Sbjct: 129 LEDKDKEKKNAKGIRDDIEE--EDDQEAYFRYMAENPTAGVVQEEE---------EDNLE 177
Query: 155 YDSDDNPVVVEKKKIEPIPALDHSLIDYEPFNKDFYQDSASISGMSEQDVMEYKKSLAIR 214
YDSD NP+ KK I+P+P +DHS I+Y PF K+FY + I+ ++ Q V+E + L +R
Sbjct: 178 YDSDGNPIAPSKKIIDPLPPIDHSEIEYPPFEKNFYDEHEEITSLTPQQVVELRHKLNLR 237
Query: 215 VSGFDVPRPVKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSG 274
VSG PRP +F GF QLMH I K Y +PT IQCQ +P+ +SGRD+IGIAKTGSG
Sbjct: 238 VSGAAPPRPGSSFAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVAMSGRDMIGIAKTGSG 297
Query: 275 KTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYG 334
KTAAF+ PM++HIMDQ EL+ +GPI VI PTREL QI+ E K+F K++ +R AVYG
Sbjct: 298 KTAAFIWPMLIHIMDQKELEPGDGPIAVIVCPTRELCQQIHSECKRFGKAYNLRSVAVYG 357
Query: 335 GMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIR 394
G S +Q K L+ G EIV+ TPGRLID +K KA + RVTYLV DEADRMFD+GFE Q+R
Sbjct: 358 GGSMWEQAKALQEGAEIVVCTPGRLIDHVKKKATNLQRVTYLVFDEADRMFDMGFEYQVR 417
Query: 395 SIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDA 454
SI +RPDRQTLLFSAT +K+EKLAR+IL DP+RV G++G ANED+TQ+V + PS
Sbjct: 418 SIASHVRPDRQTLLFSATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEIFPSGP 477
Query: 455 EKLPWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQ 514
K WL +L G VL+F +KK +E+ + L Q+ LHGD DQ+ R +++
Sbjct: 478 SKWNWLTRRLVEFTSSGSVLLFVTKKANAEELANNLKQEDHNLGLLHGDMDQSERNKVIS 537
Query: 515 KFKSGVYHVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTL 574
+FK +L+ATDVAARGLDI SIK+V+N+D+ARD+D H HRIGRTGRAG+K G AYTL
Sbjct: 538 EFKKKGIPILVATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEK-GVAYTL 596
Query: 575 VTQKEARFAGELVNSLIAAGQNVSMELMDLAMKDGRFRSXXXXXXXXXXXXXXXXXXXXX 634
+T K++ FAG+LV +L A Q+VS EL+DLAM++ FR
Sbjct: 597 LTPKDSNFAGDLVRNLEGANQHVSKELLDLAMQNPWFRKSRFKGGKGKKLNIGGGGLGYR 656
Query: 635 XXXXXFGLGIGYTPESNNTSSQS-----VPSRSAAVNSLKTGMMTQFRSNF 680
GLG + NN S S PS S A+ T M F+S +
Sbjct: 657 ERP---GLGSESSDRGNNNSVMSNYEAYKPS-SGAMGDRLTAMKAAFQSQY 703
>FB|FBgn0036104 [details] [associations]
symbol:CG6418 species:7227 "Drosophila melanogaster"
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0004386 "helicase activity" evidence=ISS] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:AE014296 GO:GO:0006200
GO:GO:0003676 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HSSP:Q58083 KO:K12835 OMA:QGVNNTA
GeneTree:ENSGT00610000086076 EMBL:AY061400 RefSeq:NP_648413.1
UniGene:Dm.922 SMR:Q9VTC1 IntAct:Q9VTC1 MINT:MINT-311970
STRING:Q9VTC1 EnsemblMetazoa:FBtr0076274 GeneID:39218
KEGG:dme:Dmel_CG6418 UCSC:CG6418-RB FlyBase:FBgn0036104
InParanoid:Q9VTC1 OrthoDB:EOG4KKWJ0 ChiTaRS:CG6418 GenomeRNAi:39218
NextBio:812543 Uniprot:Q9VTC1
Length = 791
Score = 1291 (459.5 bits), Expect = 1.2e-131, P = 1.2e-131
Identities = 276/588 (46%), Positives = 374/588 (63%)
Query: 38 YSHDNYEDTDLDNIDYEDNDA-AKAANDTG---NGAEKEEI-----DPLDAFMEGIHXXX 88
++ D+Y D D + + E A A G A+K+E DPL+ FM GI+
Sbjct: 87 HTDDDYFDDDDEPREKEIEQAYIPAPGSPGAPPTSAKKQEDSDSDEDPLEQFMAGINQQV 146
Query: 89 XXXXXXXXXX--XXXXXXDDDEEDPMESFLMAKKDVGLTLAADALRAGYDSDEEVYAAAK 146
D D+ED ES+ K+ +A SD+E+
Sbjct: 147 EKEKRQQAPKPPTQAVRGDIDDEDDEESYYRYMKE-----NPNAGLRDEGSDQEI----- 196
Query: 147 AVDAGMLDYDSDDNPVVVEKKK-IEPIPALDHSLIDYEPFNKDFYQDSASISGMSEQDVM 205
+YD D NP+ KKK I+P+P + HS I+YEPF K+FY I+ + ++ V
Sbjct: 197 -------EYDEDGNPIAPPKKKDIDPLPPIYHSEIEYEPFEKNFYTQHDDIAALDDEQVR 249
Query: 206 EYKKSLAIRVSGFDVPRPVKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDI 265
E +++L ++V+G P+PV +F GF QL+ A+ K Y +PT IQ QA+P LSGRDI
Sbjct: 250 ELRRTLGVKVTGPSPPKPVTSFGHFGFDEQLIKAVRKAEYTQPTPIQAQAVPTALSGRDI 309
Query: 266 IGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSH 325
IGIAKTGSGKTAAF+ PM++H+MDQ +L+ +GPIG+I APTREL+ QIY E KKF K +
Sbjct: 310 IGIAKTGSGKTAAFIWPMLMHVMDQKQLKPGDGPIGLILAPTRELSLQIYNEAKKFGKVY 369
Query: 326 GIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMF 385
+ V YGG SK +Q K L+ G EI++ATPGR+IDM+KMKA + RVT+LVLDEADRMF
Sbjct: 370 NLNVVCCYGGGSKWEQSKALEQGAEIIVATPGRMIDMVKMKATNLRRVTFLVLDEADRMF 429
Query: 386 DLGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQ 445
+GFEPQ+RSI +RPDRQ L+FSAT +++E+LAR++LSDPVR+ G++ AN+DITQ
Sbjct: 430 HMGFEPQVRSICNHVRPDRQCLMFSATFKKRIERLARDVLSDPVRIVQGDLNEANQDITQ 489
Query: 446 VVHVIPSDAEKLPWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKD 505
V+V P+ +K WLL L + +G VL+F +KK + + + L K + LHGD D
Sbjct: 490 SVYVFPNPLQKWNWLLCHLVKFLSEGSVLIFVTKKVDAETVSNNLLIKEYNCLLLHGDMD 549
Query: 506 QASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAG 565
QA R +++ +FK +L+ATDVAARGLDI I++VVN+D ARD++ H HRIGRTGRAG
Sbjct: 550 QADRNKVITQFKRKECDILVATDVAARGLDIPHIRNVVNYDTARDIETHTHRIGRTGRAG 609
Query: 566 DKDGTAYTLVTQKEARFAGELVNSLIAAGQNVSMELMDLAMKDGRFRS 613
+K G AYTLVT K+ FAG LV +L A Q V +LM+LAMK FRS
Sbjct: 610 EK-GNAYTLVTDKDKEFAGHLVRNLEGADQLVPDDLMELAMKSSWFRS 656
>UNIPROTKB|F1RSJ7 [details] [associations]
symbol:DDX42 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0008104 "protein localization" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0008104 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 OMA:QGVNNTA
GeneTree:ENSGT00610000086076 EMBL:CU466402 EMBL:CU466386
Ensembl:ENSSSCT00000018821 Uniprot:F1RSJ7
Length = 941
Score = 1291 (459.5 bits), Expect = 1.2e-131, P = 1.2e-131
Identities = 304/729 (41%), Positives = 409/729 (56%)
Query: 38 YSHDNYEDT---DLDNIDYEDNDAAKAANDTGNGAEKEEIDPLDAFMEGIHXXXXXXXXX 94
Y D ED+ DL I E++ + + ++ ++ DPL+AFM +
Sbjct: 75 YFEDEEEDSSNVDLPYIPAENSPTRQQFHSKPVDSDSDD-DPLEAFMAEVEDQAARDMKR 133
Query: 95 XXXXXXXXXXDDDEEDPMESFLMAKKDVGLTLAADALRAGYDSDEEVYAAAKAVDAGMLD 154
D +E ++ A+ AG +EE L+
Sbjct: 134 LEEKDKERKNVKGIRDDIEE--EDDQEAYFRYMAENPTAGVVQEEE---------EDNLE 182
Query: 155 YDSDDNPVVVEKKKIEPIPALDHSLIDYEPFN-KDFYQDSASISGMSEQDVMEYKKSLAI 213
YDSD NP+ KK I+P+P +DHS +D F K Y S +++ ++
Sbjct: 183 YDSDGNPIAPSKKIIDPLPPIDHSELDRNYFEIKIIYNTKDECIDASNLELINTLHFIS- 241
Query: 214 RVSGFDVPRPVKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGS 273
RVSG PRP +F GF QLMH I K Y +PT IQCQ +P+ LSGRD+IGIAKTGS
Sbjct: 242 RVSGAAPPRPGSSFAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTGS 301
Query: 274 GKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVY 333
GKTAAF+ PM++HIMDQ EL+ +GPI VI PTREL QI+ E K+F K++ +R AVY
Sbjct: 302 GKTAAFIWPMLIHIMDQKELEPGDGPIAVIVCPTRELCQQIHAECKRFGKAYNLRSVAVY 361
Query: 334 GGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQI 393
GG S +Q K L+ G EIV+ TPGRLID +K KA + RV+YLV DEADRMFD+GFE Q+
Sbjct: 362 GGGSMWEQAKALQEGAEIVVCTPGRLIDHVKKKATNLQRVSYLVFDEADRMFDMGFEYQV 421
Query: 394 RSIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSD 453
RSI +RPDRQTLLFSAT +K+EKLAR+IL DP+RV G++G ANED+TQ+V ++ S
Sbjct: 422 RSIASHVRPDRQTLLFSATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEILHSG 481
Query: 454 AEKLPWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEIL 513
K WL +L G VL+F +KK +E+ + L Q+G LHGD DQ+ R +++
Sbjct: 482 PSKWNWLTRRLVEFTSSGSVLLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVI 541
Query: 514 QKFKSGVYHVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYT 573
FK VL+ATDVAARGLDI SIK+V+N+D+ARD+D H HRIGRTGRAG+K G AYT
Sbjct: 542 SDFKKKDIPVLVATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEK-GVAYT 600
Query: 574 LVTQKEARFAGELVNSLIAAGQNVSMELMDLAMKDGRFRSXXXXXXXXXXXXXXXXXXXX 633
L+T K++ FAG+LV +L A Q+VS EL+DLAM++ FR
Sbjct: 601 LLTPKDSNFAGDLVRNLEGANQHVSKELLDLAMQNAWFRKSRFKGGKGKKLNIGGGGLGY 660
Query: 634 XXXXXXFGLGIGYTPESNNTSSQS-----VPSRSAA---VNSLKTGMMTQFRSNFVAASS 685
GLG + NN + S PS A + ++K +Q++S+FVAAS
Sbjct: 661 RERP---GLGSENSDRGNNNNVMSNYEAYKPSTGAMGDRLTAMKAAFQSQYKSHFVAASL 717
Query: 686 NTPSEGFNNS-ASAYA-----NKRP---ALRGFVSGGS-IGGDVNGTQTTGLTGFVSGGS 735
+ G + + AS + N P A +G S S I G G G G +S
Sbjct: 718 SNQKAGSSAAGASGWTSAGSLNSVPTNSAQQGHNSPDSPIAGATKGVPAFGSAGNLSSAP 777
Query: 736 IGGEMSGTQ 744
+ +G Q
Sbjct: 778 VTYPSAGAQ 786
>WB|WBGene00008119 [details] [associations]
symbol:C46F11.4 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0000003 "reproduction" evidence=IMP]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0000003 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083
HOGENOM:HOG000268793 KO:K12835 GeneTree:ENSGT00610000086076
OMA:QEYANLM EMBL:Z81449 PIR:T19974 RefSeq:NP_497743.1
ProteinModelPortal:Q93382 SMR:Q93382 STRING:Q93382 PaxDb:Q93382
EnsemblMetazoa:C46F11.4 GeneID:175469 KEGG:cel:CELE_C46F11.4
UCSC:C46F11.4 CTD:175469 WormBase:C46F11.4 InParanoid:Q93382
NextBio:888300 Uniprot:Q93382
Length = 811
Score = 1247 (444.0 bits), Expect = 5.3e-127, P = 5.3e-127
Identities = 292/689 (42%), Positives = 381/689 (55%)
Query: 22 EQSQAPQRLYVPPSSRYSHDN--YEDTDLDNIDYEDNDAAKAANDTGNGAEKEEIDPLDA 79
EQ A Y S + S Y+D L+ +D A +++ + EE D LDA
Sbjct: 67 EQEYANLMAYGSTSEKQSRRKRIYDDEYLEG-GSDDEKPASSSSKLAADDDDEE-DELDA 124
Query: 80 FMEGIHXXXXXXXXXXXXXXXXXXXDDDEEDPMESFLMAKKDVGLTLAADALRAGYDSDE 139
FM GI D EDP + L + D+ D + + E
Sbjct: 125 FMAGIEKQASSDKKVSEQKEKDRKEGKDTEDPSKKGL-GRADID---EEDMQESLFKFME 180
Query: 140 EVYAAAKAVDAGMLDYDSDDNPVVVEKKKIEPIPALDHSLIDYEPFNKDFYQDSASISGM 199
E Y D L+YD D N + KK I+P+P +DHS I Y+ FNK+FY++ I +
Sbjct: 181 E-YKEKHENDDEQLEYDEDGNIIWSWKKVIDPLPDIDHSQIQYQKFNKNFYEEHEDIKRL 239
Query: 200 SEQDVMEYKKSLAIRVSGFDVPRPVKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPII 259
DV+ + ++ +RV G PRPV +F F LM AI K YE+PT IQ A+P
Sbjct: 240 HYMDVIRLQNTMNLRVGGLKPPRPVCSFAHFSFDKLLMEAIRKSEYEQPTPIQAMAIPSA 299
Query: 260 LSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETK 319
LSGRD++GIAKTGSGKTAA++ P IVHIMDQP+L+ EGP+ VI PTRELA Q++ E K
Sbjct: 300 LSGRDVLGIAKTGSGKTAAYLWPAIVHIMDQPDLKAGEGPVAVIVVPTRELAIQVFQEAK 359
Query: 320 KFAKSHGIRVSAVYGGMSKLDQFKELK-AGCEIVIATPGRLIDMLKMKALTMSRVTYLVL 378
KF K + I YGG SK +Q EL+ G E+V+ TPGR+ID++KM A R T+LV
Sbjct: 360 KFCKVYNINPICAYGGGSKWEQSNELQNEGAEMVVCTPGRIIDLVKMGATNFLRTTFLVF 419
Query: 379 DEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGM 438
DEADRMFD+GFE Q++SI +RPDRQ L+FSAT +KVE+LAR+ L DPVR+ GEVG
Sbjct: 420 DEADRMFDMGFEAQVKSISDHVRPDRQCLMFSATFKQKVERLARDALVDPVRIVQGEVGE 479
Query: 439 ANEDITQVVHVIPSDAEKLPWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAA 498
AN DI Q V V+ + KL WL+ L G VL+F +KK +++ +L K F
Sbjct: 480 ANADIEQKVFVMQNQDVKLHWLIRNLVEFASLGKVLIFVTKKLDSEDVAKKLKMKDFDIV 539
Query: 499 ALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRI 558
LHGD QA R E L KF+ +L+ATDVAARGLDI I++V+NFD+ARD+D HVHRI
Sbjct: 540 LLHGDMLQAERNENLLKFRKKS-QILVATDVAARGLDISEIRTVINFDMARDIDTHVHRI 598
Query: 559 GRTGRAGDKDGTAYTLVTQKEARFAGELVNSLIAAGQNVSMELMDLAMKDGRFRSXXXXX 618
GRTGRAG K GTAYTLVT+K+ G LV +L + Q V LMDLAMK FR
Sbjct: 599 GRTGRAGHK-GTAYTLVTEKDIEMVGHLVKNLESVSQEVPKPLMDLAMKSSWFRGQRAGN 657
Query: 619 XXXXXXXXXXXXXXXXXXXXXFGLGIGYTPESNNTSSQSVPSRSAAVNSLKTGMMTQFRS 678
+G G T + + R N GM+ +S
Sbjct: 658 GGPSTGTQTRGRMGLGYTPKVRQVGGGATGAQFDPLKEQKSCRGGG-NQTVDGMIRNAQS 716
Query: 679 NFVAASSNTPSEGFNNSASAYANKRPALR 707
A SS++ S + AS AN+ L+
Sbjct: 717 --FATSSSSSSSSSSGPASG-ANRAQMLK 742
>TAIR|locus:2037416 [details] [associations]
symbol:RCF1 "regulator of CBF gene expression 1"
species:3702 "Arabidopsis thaliana" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA;ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005524 GO:GO:0003723 EMBL:AC007369
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 KO:K12811
HOGENOM:HOG000007229 EMBL:BT002030 IPI:IPI00537100 PIR:H86341
RefSeq:NP_173516.1 UniGene:At.41680 UniGene:At.48212
ProteinModelPortal:Q8H0U8 SMR:Q8H0U8 PaxDb:Q8H0U8 PRIDE:Q8H0U8
EnsemblPlants:AT1G20920.1 GeneID:838685 KEGG:ath:AT1G20920
KEGG:dosa:Os08t0154225-00 KEGG:dosa:Os08t0159900-01 GeneFarm:1021
TAIR:At1g20920 InParanoid:Q8H0U8 OMA:QIHSDIR PhylomeDB:Q8H0U8
ProtClustDB:CLSN2679447 Genevestigator:Q8H0U8 GermOnline:AT1G20920
Uniprot:Q8H0U8
Length = 1166
Score = 1162 (414.1 bits), Expect = 9.5e-120, Sum P(2) = 9.5e-120
Identities = 255/570 (44%), Positives = 352/570 (61%)
Query: 45 DTDLDNIDYEDNDAAKAANDTGNGA-EKEEIDPLDAFMEGIHXXXXXXXXXXXXXXXXXX 103
D D +D E+ AA + G+GA ++EEIDPLDAFM +
Sbjct: 350 DGDAKMVDLENETAATVSESGGDGAVDEEEIDPLDAFMNTMVLPEVEKFCNGAPPPAVND 409
Query: 104 XD-DDEEDPMESFLMAKKDVGLTLAADALRAGYDSDEEVYAAAKAVDAGMLDYDSDDNPV 162
D + + ES KK G A + G DSD + Y+ K D LD D ++
Sbjct: 410 GTLDSKMNGKESGDRPKK--GFNKALGRIIQGEDSDSD-YSEPKNDDDPSLDEDDEEFMK 466
Query: 163 VVEKKKIEPIPALDHSLIDYEPFNKDFYQDSASISGMSEQDVMEYKKSLAIRVSGFDVPR 222
V+K K E + +DHS I+YEPF K+FY + IS M++++V Y+K L ++V G DVPR
Sbjct: 467 RVKKTKAEKLSLVDHSKIEYEPFRKNFYIEVKDISRMTQEEVNTYRKELELKVHGKDVPR 526
Query: 223 PVKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLP 282
P+K + G +++++ + K YEKP IQ QALPII+SGRD IG+AKTGSGKT FVLP
Sbjct: 527 PIKFWHQTGLTSKILDTMKKLNYEKPMPIQTQALPIIMSGRDCIGVAKTGSGKTLGFVLP 586
Query: 283 MIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQF 342
M+ HI DQP ++ +GPIG++ APTREL QI+ + +KF+K GIR VYGG Q
Sbjct: 587 MLRHIKDQPPVEAGDGPIGLVMAPTRELVQQIHSDIRKFSKPLGIRCVPVYGGSGVAQQI 646
Query: 343 KELKAGCEIVIATPGRLIDML---KMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQ 399
ELK G EIV+ TPGR+ID+L K + RVT+LV+DEADRMFD+GFEPQI I+
Sbjct: 647 SELKRGTEIVVCTPGRMIDILCTSSGKITNLRRVTFLVMDEADRMFDMGFEPQITRIIQN 706
Query: 400 IRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPW 459
IRP+RQT+LFSAT PR+VE LAR++L+ PV + VG + N+DITQ+V V P ++++
Sbjct: 707 IRPERQTVLFSATFPRQVETLARKVLNKPVEIQVGGRSVVNKDITQLVEVRP-ESDRFLR 765
Query: 460 LLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSG 519
LLE L + G +LVF + D + + + + +LHG KDQ R + FK+
Sbjct: 766 LLELLGEWSEKGKILVFVQSQEKCDALYRDMIKSSYPCLSLHGGKDQTDRESTISDFKND 825
Query: 520 VYHVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKE 579
V ++LIAT VAARGLD+K ++ VVNFD + +VHR+GRTGRAG K G A T +++ +
Sbjct: 826 VCNLLIATSVAARGLDVKELELVVNFDAPNHYEDYVHRVGRTGRAGRK-GCAVTFISEDD 884
Query: 580 ARFAGELVNSLIAAGQNVSMELMDLAMKDG 609
A++A +LV +L + Q V +L LA DG
Sbjct: 885 AKYAPDLVKALELSEQPVPDDLKALA--DG 912
Score = 37 (18.1 bits), Expect = 9.5e-120, Sum P(2) = 9.5e-120
Identities = 7/20 (35%), Positives = 11/20 (55%)
Query: 53 YEDNDAAKAANDTGNGAEKE 72
+ED+ K+ D G EK+
Sbjct: 243 HEDSPKRKSVEDNGEKKEKK 262
>POMBASE|SPCC10H11.01 [details] [associations]
symbol:prp11 "ATP-dependent RNA helicase Prp11"
species:4896 "Schizosaccharomyces pombe" [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=ISO] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005681
"spliceosomal complex" evidence=ISO] [GO:0005829 "cytosol"
evidence=IDA] [GO:0044732 "mitotic spindle pole body" evidence=IDA]
[GO:0045292 "mRNA cis splicing, via spliceosome" evidence=ISO]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 PomBase:SPCC10H11.01 GO:GO:0005829 GO:GO:0005524
EMBL:CU329672 GenomeReviews:CU329672_GR GO:GO:0044732 GO:GO:0005681
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 GO:GO:0045292 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K12811 HOGENOM:HOG000007229 EMBL:AB027964
RefSeq:NP_587856.1 ProteinModelPortal:Q9P7C7 DIP:DIP-59804N
IntAct:Q9P7C7 PRIDE:Q9P7C7 EnsemblFungi:SPCC10H11.01.1
GeneID:2538936 KEGG:spo:SPCC10H11.01 OMA:SLVIIYN OrthoDB:EOG40CMR1
NextBio:20800113 Uniprot:Q9P7C7
Length = 1014
Score = 1063 (379.3 bits), Expect = 3.8e-114, Sum P(2) = 3.8e-114
Identities = 228/512 (44%), Positives = 322/512 (62%)
Query: 105 DDDEEDPMESFLMAKKDVGLTLAADALRAGYDSDEEVYAAAKAVDAGMLD--YDSDDN-- 160
++DE DP+++++ + VG T D +R G + E + A + ++ + ++N
Sbjct: 298 EEDEVDPLDAYMASL--VGTT---DTIRPGLLNTEVIDPNANDDERMVISETLEEEENLL 352
Query: 161 PVVVEKKKIEPIPALDHSLIDYEPFNKDFYQDSASISGMSEQDVMEYKKSL-AIRVSGFD 219
+ ++ K + + +DHS I+YE F KDFY + + +S +V E + SL I++ G D
Sbjct: 353 ALAAKRSKKKDVITVDHSKINYEDFKKDFYVEPEELKNLSPAEVDELRASLDGIKIRGID 412
Query: 220 VPRPVKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAF 279
P+PV ++ CG S Q + I+ GYEKPTSIQ QA+P I SGRD+IG+AKTGSGKT AF
Sbjct: 413 CPKPVTSWSQCGLSAQTISVINSLGYEKPTSIQAQAIPAITSGRDVIGVAKTGSGKTIAF 472
Query: 280 VLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKL 339
+LPM HI DQ L+ EGPI +I PTRELA QI+ E K F K IR YGG
Sbjct: 473 LLPMFRHIKDQRPLKTGEGPIAIIMTPTRELAVQIFRECKPFLKLLNIRACCAYGGAPIK 532
Query: 340 DQFKELKAGCEIVIATPGRLIDMLKMKA---LTMSRVTYLVLDEADRMFDLGFEPQIRSI 396
DQ +LK G EIV+ TPGR+ID+L A + R TYLVLDEADRMFDLGFEPQ+ I
Sbjct: 533 DQIADLKRGAEIVVCTPGRMIDVLSANAGRVTNLHRCTYLVLDEADRMFDLGFEPQVMRI 592
Query: 397 VGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEK 456
+ IRPDRQT+LFSAT PR +E LAR++L PV +TVG + ++ Q+V V P ++ K
Sbjct: 593 INNIRPDRQTVLFSATFPRAMEALARKVLKKPVEITVGGRSVVASEVEQIVEVRPEES-K 651
Query: 457 LPWLLEKLPGMIDDG-DV--LVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEIL 513
LLE L + ++ DV LVF ++ + D + S L ++G+ + ++HG KDQ R +
Sbjct: 652 FSRLLELLGELYNNQLDVRTLVFVDRQESADALLSDLMKRGYTSNSIHGGKDQHDRDSTI 711
Query: 514 QKFKSGVYHVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYT 573
+K+GV+ VLIAT V ARGLD+KS++ VVN+D M+ +VHR+GRTGRAG G A T
Sbjct: 712 SDYKAGVFDVLIATSVVARGLDVKSLQLVVNYDCPNHMEDYVHRVGRTGRAGHT-GVAVT 770
Query: 574 LVTQKEARFAGELVNSLIAAGQNVSMELMDLA 605
+T ++ ++A ++ +L + Q V EL LA
Sbjct: 771 FITPEQEKYAVDIAKALKMSKQPVPKELQTLA 802
Score = 83 (34.3 bits), Expect = 3.8e-114, Sum P(2) = 3.8e-114
Identities = 24/78 (30%), Positives = 35/78 (44%)
Query: 7 GFEGFNINRQTSYSFEQSQAPQRLYVPPSSRYSHDNYEDTDLDNIDYEDNDAAKAANDTG 66
G GF INRQ S + R+++ N ED + D ED N+
Sbjct: 240 GISGFEINRQKDTS--DMKRNNRVHMDDEDGPRRMNLEDYQ-ELWDQEDR--GMLGNEQA 294
Query: 67 NGAEKEEIDPLDAFMEGI 84
E++E+DPLDA+M +
Sbjct: 295 ASMEEDEVDPLDAYMASL 312
>ZFIN|ZDB-GENE-030131-667 [details] [associations]
symbol:ddx46 "DEAD (Asp-Glu-Ala-Asp) box
polypeptide 46" species:7955 "Danio rerio" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IMP] [GO:0031017 "exocrine
pancreas development" evidence=IMP] [GO:0007420 "brain development"
evidence=IMP] [GO:0048546 "digestive tract morphogenesis"
evidence=IMP] [GO:0072576 "liver morphogenesis" evidence=IMP]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0016607 "nuclear speck" evidence=IEA] [GO:0015030 "Cajal body"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 ZFIN:ZDB-GENE-030131-667
GO:GO:0005524 GO:GO:0007420 GO:GO:0003676 GO:GO:0000398
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0048546
GO:GO:0008026 GO:GO:0031017 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00610000086076 OMA:IEEENKF GO:GO:0072576
EMBL:CU302316 IPI:IPI00865887 Ensembl:ENSDART00000099265
ArrayExpress:F1RA00 Bgee:F1RA00 Uniprot:F1RA00
Length = 1035
Score = 1040 (371.2 bits), Expect = 5.7e-113, Sum P(3) = 5.7e-113
Identities = 215/444 (48%), Positives = 291/444 (65%)
Query: 165 EKKKIEPIPALDHSLIDYEPFNKDFYQDSASISGMSEQDVMEYKKSL-AIRVSGFDVPRP 223
++K +EP+ DH I YEPF K+FY + ++ MS ++V EY+ L I V G P+P
Sbjct: 299 QRKVLEPV---DHQKIQYEPFRKNFYVEVPELARMSPEEVSEYRLELEGISVKGKGCPKP 355
Query: 224 VKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPM 283
+KT+ CG S ++++A+ K YEKPT IQ QA+P I+SGRD+IGIAKTGSGKT AF+LPM
Sbjct: 356 IKTWVQCGISMKVLNALKKHNYEKPTPIQAQAIPAIMSGRDLIGIAKTGSGKTIAFLLPM 415
Query: 284 IVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFK 343
HI+DQ + + EGP+ VI PTRELA QI E KKF+KS +RV VYGG +Q
Sbjct: 416 FRHILDQRPVGEAEGPLAVIMTPTRELALQITKECKKFSKSLALRVVCVYGGTGISEQIA 475
Query: 344 ELKAGCEIVIATPGRLIDMLKM---KALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQI 400
ELK G EI++ TPGR+IDML + + RVTY+V+DEADRMFD+GFEPQ+ IV +
Sbjct: 476 ELKRGAEIIVCTPGRMIDMLGANNGRVTNLRRVTYVVIDEADRMFDMGFEPQVMRIVDNV 535
Query: 401 RPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWL 460
RPDRQT++FSAT PR +E LAR ILS PV V VG + D+ Q V VI + + L L
Sbjct: 536 RPDRQTVMFSATFPRTMEALARRILSKPVEVQVGGRSVVCSDVEQHVIVIEEEKKFLK-L 594
Query: 461 LEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGV 520
LE L + G V++F K+ D + L + + +LHG DQ R I+ FK+G
Sbjct: 595 LEILGHYQEKGSVIIFVDKQEHADGLLKDLMKASYPCMSLHGGIDQYDRDSIINDFKNGA 654
Query: 521 YHVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEA 580
+L+AT VAARGLD+K + VVN+ + +VHR GRTGRAG+K G AYT +T+ +A
Sbjct: 655 CRLLVATSVAARGLDVKQLILVVNYSCPNHYEDYVHRAGRTGRAGNK-GYAYTFITEGQA 713
Query: 581 RFAGELVNSLIAAGQNVSMELMDL 604
R++G+++ +L +G +V EL L
Sbjct: 714 RYSGDILKALELSGSSVPAELEQL 737
Score = 69 (29.3 bits), Expect = 5.7e-113, Sum P(3) = 5.7e-113
Identities = 16/39 (41%), Positives = 23/39 (58%)
Query: 49 DNIDYEDNDAAKAANDTGNGAEKE---EIDPLDAFMEGI 84
D D E+ D A A ++ E+E E+DPLDA+ME +
Sbjct: 185 DGDDEEEQDKAAEAEESERMEEEEVGEEVDPLDAYMEEV 223
Score = 40 (19.1 bits), Expect = 5.7e-113, Sum P(3) = 5.7e-113
Identities = 15/32 (46%), Positives = 20/32 (62%)
Query: 708 GFVSGGSIGGDVNGTQT--TGLTGFVSGGSIG 737
G VS GS GG V+G+ + +GL G +S S G
Sbjct: 819 GSVSAGSAGG-VSGSVSAVSGL-GSLSTPSAG 848
>UNIPROTKB|I3LR20 [details] [associations]
symbol:DDX46 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005730 "nucleolus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00610000086076 OMA:IEEENKF EMBL:FP312757
Ensembl:ENSSSCT00000027801 Uniprot:I3LR20
Length = 1032
Score = 1045 (372.9 bits), Expect = 2.3e-112, Sum P(2) = 2.3e-112
Identities = 214/444 (48%), Positives = 294/444 (66%)
Query: 165 EKKKIEPIPALDHSLIDYEPFNKDFYQDSASISGMSEQDVMEYKKSL-AIRVSGFDVPRP 223
++K +EP+ DH I+YEPF K+FY + ++ MS+++V ++ + I V G P+P
Sbjct: 314 QRKLLEPV---DHGKIEYEPFRKNFYVEVPELAKMSQEEVNVFRLEMEGITVKGKGCPKP 370
Query: 224 VKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPM 283
+K++ CG S ++++++ K GYEKPT IQ QA+P I+SGRD+IGIAKTGSGKT AF+LPM
Sbjct: 371 IKSWVQCGISMKILNSLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPM 430
Query: 284 IVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFK 343
HIMDQ L++ EGPI VI PTRELA QI E KKF+K+ G+RV VYGG +Q
Sbjct: 431 FRHIMDQRSLEEGEGPIAVIMTPTRELALQITKECKKFSKTLGLRVVCVYGGTGISEQIA 490
Query: 344 ELKAGCEIVIATPGRLIDMLKM---KALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQI 400
ELK G EI++ TPGR+IDML + + RVTY+VLDEADRMFD+GFEPQ+ IV +
Sbjct: 491 ELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIVDNV 550
Query: 401 RPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWL 460
RPDRQT++FSAT PR +E LAR ILS P+ V VG + D+ Q V VI + + L L
Sbjct: 551 RPDRQTVMFSATFPRAMEALARRILSKPIEVQVGGRSVVCSDVEQQVIVIEEEKKFLK-L 609
Query: 461 LEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGV 520
LE L + G V++F K+ D + L + + +LHG DQ R I+ FK+G
Sbjct: 610 LELLGHYQESGSVIIFVDKQEHADGLLKDLMRASYPCMSLHGGIDQYDRDSIINDFKNGT 669
Query: 521 YHVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEA 580
+L+AT VAARGLD+K + VVN+ + +VHR GRTGRAG+K G AYT +T+ +A
Sbjct: 670 CKLLVATSVAARGLDVKHLILVVNYSCPNHYEDYVHRAGRTGRAGNK-GYAYTFITEDQA 728
Query: 581 RFAGELVNSLIAAGQNVSMELMDL 604
R+AG+++ +L +G V +L L
Sbjct: 729 RYAGDIIKALELSGTAVPPDLEKL 752
Score = 84 (34.6 bits), Expect = 2.3e-112, Sum P(2) = 2.3e-112
Identities = 17/37 (45%), Positives = 27/37 (72%)
Query: 48 LDNIDYEDNDAAKAANDTGNGAEKEEIDPLDAFMEGI 84
L++ D +++D A+A + GN E EE+DPLDA+ME +
Sbjct: 200 LEDDDDDEDDPAEAEKE-GNEVEGEELDPLDAYMEEV 235
Score = 43 (20.2 bits), Expect = 5.0e-108, Sum P(2) = 5.0e-108
Identities = 7/10 (70%), Positives = 9/10 (90%)
Query: 105 DDDEEDPMES 114
DDDE+DP E+
Sbjct: 204 DDDEDDPAEA 213
>UNIPROTKB|F1PK90 [details] [associations]
symbol:DDX46 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00610000086076 OMA:IEEENKF EMBL:AAEX03007786
Ensembl:ENSCAFT00000001619 Uniprot:F1PK90
Length = 1032
Score = 1045 (372.9 bits), Expect = 3.0e-112, Sum P(2) = 3.0e-112
Identities = 214/444 (48%), Positives = 294/444 (66%)
Query: 165 EKKKIEPIPALDHSLIDYEPFNKDFYQDSASISGMSEQDVMEYKKSL-AIRVSGFDVPRP 223
++K +EP+ DH I+YEPF K+FY + ++ MS+++V ++ + I V G P+P
Sbjct: 314 QRKLLEPV---DHGKIEYEPFRKNFYVEVPELAKMSQEEVNVFRLEMEGITVKGKGCPKP 370
Query: 224 VKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPM 283
+K++ CG S ++++++ K GYEKPT IQ QA+P I+SGRD+IGIAKTGSGKT AF+LPM
Sbjct: 371 IKSWVQCGISMKILNSLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPM 430
Query: 284 IVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFK 343
HIMDQ L++ EGPI VI PTRELA QI E KKF+K+ G+RV VYGG +Q
Sbjct: 431 FRHIMDQRSLEEGEGPIAVIMTPTRELALQITKECKKFSKTLGLRVVCVYGGTGISEQIA 490
Query: 344 ELKAGCEIVIATPGRLIDMLKM---KALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQI 400
ELK G EI++ TPGR+IDML + + RVTY+VLDEADRMFD+GFEPQ+ IV +
Sbjct: 491 ELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIVDNV 550
Query: 401 RPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWL 460
RPDRQT++FSAT PR +E LAR ILS P+ V VG + D+ Q V VI + + L L
Sbjct: 551 RPDRQTVMFSATFPRAMEALARRILSKPIEVQVGGRSVVCSDVEQQVIVIEEEKKFLK-L 609
Query: 461 LEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGV 520
LE L + G V++F K+ D + L + + +LHG DQ R I+ FK+G
Sbjct: 610 LELLGHYQESGSVIIFVDKQEHADGLLKDLMRASYPCMSLHGGIDQYDRDSIINDFKNGT 669
Query: 521 YHVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEA 580
+L+AT VAARGLD+K + VVN+ + +VHR GRTGRAG+K G AYT +T+ +A
Sbjct: 670 CKLLVATSVAARGLDVKHLILVVNYSCPNHYEDYVHRAGRTGRAGNK-GYAYTFITEDQA 728
Query: 581 RFAGELVNSLIAAGQNVSMELMDL 604
R+AG+++ +L +G V +L L
Sbjct: 729 RYAGDIIKALELSGTAVPPDLEKL 752
Score = 83 (34.3 bits), Expect = 3.0e-112, Sum P(2) = 3.0e-112
Identities = 17/37 (45%), Positives = 27/37 (72%)
Query: 48 LDNIDYEDNDAAKAANDTGNGAEKEEIDPLDAFMEGI 84
L++ D +++D A+A + GN E EE+DPLDA+ME +
Sbjct: 200 LEDDDDDEDDPAEAEKE-GNEMEGEELDPLDAYMEEV 235
Score = 43 (20.2 bits), Expect = 5.0e-108, Sum P(2) = 5.0e-108
Identities = 7/10 (70%), Positives = 9/10 (90%)
Query: 105 DDDEEDPMES 114
DDDE+DP E+
Sbjct: 204 DDDEDDPAEA 213
>UNIPROTKB|Q7L014 [details] [associations]
symbol:DDX46 "Probable ATP-dependent RNA helicase DDX46"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0015030 "Cajal body" evidence=IEA] [GO:0016607 "nuclear speck"
evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0008380 GO:GO:0016607 GO:GO:0006397 GO:GO:0003723
GO:GO:0015030 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K12811 EMBL:AF106680 EMBL:AB018344 EMBL:BC012304 EMBL:BK000565
IPI:IPI00329791 RefSeq:NP_055644.2 UniGene:Hs.406549
ProteinModelPortal:Q7L014 SMR:Q7L014 IntAct:Q7L014
MINT:MINT-3002486 STRING:Q7L014 PhosphoSite:Q7L014 DMDM:116241326
PaxDb:Q7L014 PeptideAtlas:Q7L014 PRIDE:Q7L014
Ensembl:ENST00000354283 Ensembl:ENST00000452510 GeneID:9879
KEGG:hsa:9879 UCSC:uc003kzw.3 CTD:9879 GeneCards:GC05P134094
HGNC:HGNC:18681 HPA:HPA036554 neXtProt:NX_Q7L014
PharmGKB:PA134894452 HOGENOM:HOG000007229 HOVERGEN:HBG081426
InParanoid:Q7L014 OrthoDB:EOG441Q9T ChiTaRS:DDX46 GenomeRNAi:9879
NextBio:37233 PMAP-CutDB:Q7L014 ArrayExpress:Q7L014 Bgee:Q7L014
CleanEx:HS_DDX46 Genevestigator:Q7L014 GermOnline:ENSG00000145833
Uniprot:Q7L014
Length = 1031
Score = 1045 (372.9 bits), Expect = 3.0e-112, Sum P(2) = 3.0e-112
Identities = 214/444 (48%), Positives = 294/444 (66%)
Query: 165 EKKKIEPIPALDHSLIDYEPFNKDFYQDSASISGMSEQDVMEYKKSL-AIRVSGFDVPRP 223
++K +EP+ DH I+YEPF K+FY + ++ MS+++V ++ + I V G P+P
Sbjct: 314 QRKLLEPV---DHGKIEYEPFRKNFYVEVPELAKMSQEEVNVFRLEMEGITVKGKGCPKP 370
Query: 224 VKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPM 283
+K++ CG S ++++++ K GYEKPT IQ QA+P I+SGRD+IGIAKTGSGKT AF+LPM
Sbjct: 371 IKSWVQCGISMKILNSLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPM 430
Query: 284 IVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFK 343
HIMDQ L++ EGPI VI PTRELA QI E KKF+K+ G+RV VYGG +Q
Sbjct: 431 FRHIMDQRSLEEGEGPIAVIMTPTRELALQITKECKKFSKTLGLRVVCVYGGTGISEQIA 490
Query: 344 ELKAGCEIVIATPGRLIDMLKM---KALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQI 400
ELK G EI++ TPGR+IDML + + RVTY+VLDEADRMFD+GFEPQ+ IV +
Sbjct: 491 ELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIVDNV 550
Query: 401 RPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWL 460
RPDRQT++FSAT PR +E LAR ILS P+ V VG + D+ Q V VI + + L L
Sbjct: 551 RPDRQTVMFSATFPRAMEALARRILSKPIEVQVGGRSVVCSDVEQQVIVIEEEKKFLK-L 609
Query: 461 LEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGV 520
LE L + G V++F K+ D + L + + +LHG DQ R I+ FK+G
Sbjct: 610 LELLGHYQESGSVIIFVDKQEHADGLLKDLMRASYPCMSLHGGIDQYDRDSIINDFKNGT 669
Query: 521 YHVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEA 580
+L+AT VAARGLD+K + VVN+ + +VHR GRTGRAG+K G AYT +T+ +A
Sbjct: 670 CKLLVATSVAARGLDVKHLILVVNYSCPNHYEDYVHRAGRTGRAGNK-GYAYTFITEDQA 728
Query: 581 RFAGELVNSLIAAGQNVSMELMDL 604
R+AG+++ +L +G V +L L
Sbjct: 729 RYAGDIIKALELSGTAVPPDLEKL 752
Score = 83 (34.3 bits), Expect = 3.0e-112, Sum P(2) = 3.0e-112
Identities = 17/37 (45%), Positives = 27/37 (72%)
Query: 48 LDNIDYEDNDAAKAANDTGNGAEKEEIDPLDAFMEGI 84
L++ D +++D A+A + GN E EE+DPLDA+ME +
Sbjct: 200 LEDDDDDEDDPAEAEKE-GNEMEGEELDPLDAYMEEV 235
Score = 43 (20.2 bits), Expect = 5.0e-108, Sum P(2) = 5.0e-108
Identities = 7/10 (70%), Positives = 9/10 (90%)
Query: 105 DDDEEDPMES 114
DDDE+DP E+
Sbjct: 204 DDDEDDPAEA 213
>UNIPROTKB|F1MX40 [details] [associations]
symbol:DDX46 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005730 "nucleolus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00610000086076 OMA:IEEENKF EMBL:DAAA02020348
EMBL:DAAA02020349 IPI:IPI00703383 Ensembl:ENSBTAT00000028682
Uniprot:F1MX40
Length = 1032
Score = 1040 (371.2 bits), Expect = 1.0e-111, Sum P(2) = 1.0e-111
Identities = 214/444 (48%), Positives = 293/444 (65%)
Query: 165 EKKKIEPIPALDHSLIDYEPFNKDFYQDSASISGMSEQDVMEYKKSL-AIRVSGFDVPRP 223
++K +EP+ DH I+YEPF K+FY + ++ MS ++V ++ + I V G P+P
Sbjct: 314 QRKLLEPV---DHGKIEYEPFRKNFYVEVPELAKMSLEEVNVFRLEMEGITVKGKGCPKP 370
Query: 224 VKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPM 283
+K++ CG S ++++++ K GYEKPT IQ QA+P I+SGRD+IGIAKTGSGKT AF+LPM
Sbjct: 371 IKSWVQCGISMKILNSLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPM 430
Query: 284 IVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFK 343
HIMDQ L++ EGPI VI PTRELA QI E KKF+K+ G+RV VYGG +Q
Sbjct: 431 FRHIMDQRSLEEGEGPIAVIMTPTRELALQITKECKKFSKTLGLRVVCVYGGTGISEQIA 490
Query: 344 ELKAGCEIVIATPGRLIDMLKM---KALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQI 400
ELK G EI++ TPGR+IDML + + RVTY+VLDEADRMFD+GFEPQ+ IV +
Sbjct: 491 ELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIVDNV 550
Query: 401 RPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWL 460
RPDRQT++FSAT PR +E LAR ILS P+ V VG + D+ Q V VI + + L L
Sbjct: 551 RPDRQTVMFSATFPRAMEALARRILSKPIEVQVGGRSVVCSDVEQQVIVIEEEKKFLK-L 609
Query: 461 LEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGV 520
LE L + G V++F K+ D + L + + +LHG DQ R I+ FK+G
Sbjct: 610 LELLGHYQESGSVIIFVDKQEHADGLLKDLMRASYPCMSLHGGIDQYDRDSIINDFKNGT 669
Query: 521 YHVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEA 580
+L+AT VAARGLD+K + VVN+ + +VHR GRTGRAG+K G AYT +T+ +A
Sbjct: 670 CKLLVATSVAARGLDVKHLILVVNYSCPNHYEDYVHRAGRTGRAGNK-GYAYTFITEDQA 728
Query: 581 RFAGELVNSLIAAGQNVSMELMDL 604
R+AG+++ +L +G V +L L
Sbjct: 729 RYAGDIIKALELSGTAVPPDLEKL 752
Score = 83 (34.3 bits), Expect = 1.0e-111, Sum P(2) = 1.0e-111
Identities = 17/37 (45%), Positives = 27/37 (72%)
Query: 48 LDNIDYEDNDAAKAANDTGNGAEKEEIDPLDAFMEGI 84
L++ D +++D A+A + GN E EE+DPLDA+ME +
Sbjct: 200 LEDDDDDEDDPAEAEKE-GNEMEGEELDPLDAYMEEV 235
Score = 43 (20.2 bits), Expect = 1.7e-107, Sum P(2) = 1.7e-107
Identities = 7/10 (70%), Positives = 9/10 (90%)
Query: 105 DDDEEDPMES 114
DDDE+DP E+
Sbjct: 204 DDDEDDPAEA 213
>UNIPROTKB|E1BSC0 [details] [associations]
symbol:DDX46 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00610000086076 OMA:IEEENKF EMBL:AADN02028359
IPI:IPI00577115 Ensembl:ENSGALT00000010339 Uniprot:E1BSC0
Length = 1031
Score = 1082 (385.9 bits), Expect = 1.6e-111, Sum P(2) = 1.6e-111
Identities = 240/565 (42%), Positives = 336/565 (59%)
Query: 48 LDNIDYEDNDAAKAANDTGNGAEKEEIDPLDAFMEGIHXXXXXXXXXXXXXXXXXXXDDD 107
L++ D +D + A+ + GN E EE+DPLDA+ME +
Sbjct: 199 LEDDDDDDEETAEGEKE-GNEVEDEELDPLDAYMEEVKEEVKKFNMRSVKGGGGSEKKSG 257
Query: 108 EE-DPMESFLMAKKDVGLTLAADALRAGYDSDEEVYAAAKA-VD--AGMLDYDSDDNPVV 163
+ + + KK V T D D Y++ + VD + Y +
Sbjct: 258 PTVTKVVTVVTTKKAVVETEKKKGELMENDQDAMEYSSEEEEVDLQTALTGYQTK----- 312
Query: 164 VEKKKIEPIPALDHSLIDYEPFNKDFYQDSASISGMSEQDVMEYKKSL-AIRVSGFDVPR 222
++K +EP+ DH I+YEPF K+FY + ++ M++++V Y+ + I V G P+
Sbjct: 313 -QRKLLEPV---DHGKIEYEPFRKNFYVEVPELAKMTQEEVNVYRLEMEGITVKGKGCPK 368
Query: 223 PVKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLP 282
P+KT+ CG S +++ A+ K GYEKPT IQ QA+P I++GRD+IGIAKTGSGKT AF+LP
Sbjct: 369 PIKTWVQCGISMKILTALKKHGYEKPTPIQSQAIPAIMNGRDLIGIAKTGSGKTIAFLLP 428
Query: 283 MIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQF 342
M HIMDQ L++ EGPI VI PTRELA QI E KKF+K+ G+RV VYGG +Q
Sbjct: 429 MFRHIMDQRALEEGEGPIAVIMTPTRELALQITKECKKFSKTLGLRVVCVYGGTGISEQI 488
Query: 343 KELKAGCEIVIATPGRLIDMLKM---KALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQ 399
ELK G EI++ TPGR+IDML + + RVTY+VLDEADRMFD+GFEPQ+ IV
Sbjct: 489 AELKRGAEIIVCTPGRMIDMLAANNGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIVDN 548
Query: 400 IRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPW 459
+RPDRQT++FSAT PR +E LAR ILS P+ V VG + D+ Q V VI + + L
Sbjct: 549 VRPDRQTVMFSATFPRAMEALARRILSKPIEVQVGGRSVVCSDVEQHVIVIEEENKFLK- 607
Query: 460 LLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSG 519
LLE L + G V++F K+ D + L + + +LHG DQ R I+ FK+G
Sbjct: 608 LLELLGHYQEKGSVIIFVDKQEHADGLLKDLMRASYPCLSLHGGIDQYDRDSIINDFKNG 667
Query: 520 VYHVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKE 579
+L+AT VAARGLD+K + VVN+ + +VHR GRTGRAG+K G AYT +T+ +
Sbjct: 668 TCKLLVATSVAARGLDVKQLMLVVNYSCPNHYEDYVHRAGRTGRAGNK-GFAYTFITEDQ 726
Query: 580 ARFAGELVNSLIAAGQNVSMELMDL 604
AR+AG+++ +L +G + +L L
Sbjct: 727 ARYAGDIIKALELSGNPIPADLEKL 751
Score = 39 (18.8 bits), Expect = 1.6e-111, Sum P(2) = 1.6e-111
Identities = 10/24 (41%), Positives = 12/24 (50%)
Query: 684 SSNTPSEGFNNSASAYANKRPALR 707
SSN P+ N+ KR ALR
Sbjct: 834 SSNAPTPSAGNAEKLEIAKRLALR 857
>DICTYBASE|DDB_G0275443 [details] [associations]
symbol:helB1 "putative RNA splicing factor"
species:44689 "Dictyostelium discoideum" [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA;ISS] [GO:0005681 "spliceosomal complex"
evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=ISS] [GO:0000375 "RNA splicing, via transesterification
reactions" evidence=ISS] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0275443 GO:GO:0005524
GO:GO:0006397 GenomeReviews:CM000151_GR GO:GO:0005681 GO:GO:0003676
EMBL:AAFI02000013 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
GO:GO:0000375 HSSP:P09052 EMBL:X81823 RefSeq:XP_643509.1
ProteinModelPortal:Q553B1 PRIDE:Q553B1 EnsemblProtists:DDB0191329
GeneID:8620090 KEGG:ddi:DDB_G0275443 KO:K12811 OMA:SVVAPEI
ProtClustDB:CLSZ2500419 Uniprot:Q553B1
Length = 1151
Score = 1036 (369.7 bits), Expect = 7.3e-111, Sum P(3) = 7.3e-111
Identities = 216/505 (42%), Positives = 321/505 (63%)
Query: 105 DDDEEDPMESFLM-AKKDVGLTLAADALRAGYDSDEEVYAAAKAVDAGMLDYDSDDNPVV 163
+DD+ DP+++++ K+ L L D DE++ ++ D D D
Sbjct: 397 EDDDIDPLDAYMENLNKEANLNLKKSKTSQMIDDDEKLEEESEGED------DGKDK--T 448
Query: 164 VEKKKIEPIPALDHSLIDYEPFNKDFYQDSASISGMSEQDVMEYKKSLAIRVSGFDVPRP 223
++K K E + DH+ I Y F K+FY + ++ M+E +V++++ L ++++G D P+P
Sbjct: 449 IKKGKKEMLHT-DHTSIKYAEFQKNFYIEVPVLANMTETEVLDFRSELGVKITGKDCPKP 507
Query: 224 VKTFEDCGFSTQLMHAISKQ-GYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLP 282
++++ G T+ +H + K+ YEKPTSIQ Q +P I++GRD+IGIA+TGSGKT AF+LP
Sbjct: 508 IQSWAQAGL-TEKVHLLLKKFQYEKPTSIQAQTIPAIMNGRDLIGIARTGSGKTLAFLLP 566
Query: 283 MIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQF 342
M HI+ QP+ EG I +I +PTRELA QI++E KKF+K G+R + VYGG S +Q
Sbjct: 567 MFRHILAQPKSAPGEGMIALIMSPTRELALQIHVECKKFSKVLGLRTACVYGGASISEQI 626
Query: 343 KELKAGCEIVIATPGRLIDML---KMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQ 399
ELK G +IV+ TPGR+ID+L + + RVT+LVLDEADRMFD+GF PQI IV
Sbjct: 627 AELKRGADIVVCTPGRMIDILCANNRRITNLRRVTFLVLDEADRMFDMGFGPQINCIVDS 686
Query: 400 IRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPW 459
IRPDRQT++FSAT P KVE +A++IL+ P+ + G + + DI Q V V P++ +
Sbjct: 687 IRPDRQTIMFSATFPPKVENVAKKILNKPLEIIAGGRSIVSSDIEQFVEVRPTET-RFRR 745
Query: 460 LLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSG 519
L+E L G +L+F +++ T D + QL+ ++ +LHG KDQ R E + FK+
Sbjct: 746 LIELLSIWYHKGQILIFTNRQETTDNLYRQLSNSQYQCLSLHGSKDQTDRDETISDFKNK 805
Query: 520 VYHVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKE 579
V +LIAT +A+RGLDIK + VVNFD ++ +VHR+GRTGRAG++ GTAYT +T E
Sbjct: 806 VKTILIATPLASRGLDIKDLNLVVNFDCPDHLEDYVHRVGRTGRAGNR-GTAYTFITPDE 864
Query: 580 ARFAGELVNSLIAAGQNVSMELMDL 604
RF+ ++ +L +G V EL L
Sbjct: 865 ERFSSSIIKALEQSGSKVPDELRKL 889
Score = 56 (24.8 bits), Expect = 7.3e-111, Sum P(3) = 7.3e-111
Identities = 15/45 (33%), Positives = 21/45 (46%)
Query: 70 EKEEIDPLDAFMEGIHXXXXXXXXXXXXXXXXXXXDDDEEDPMES 114
E ++IDPLDA+ME ++ DDDE+ ES
Sbjct: 397 EDDDIDPLDAYMENLNKEANLNLKKSKTSQMI---DDDEKLEEES 438
Score = 37 (18.1 bits), Expect = 7.3e-111, Sum P(3) = 7.3e-111
Identities = 8/45 (17%), Positives = 21/45 (46%)
Query: 12 NINRQTSYSFEQSQAPQRLYVPPSSRYSHDNYEDTDLDNIDYEDN 56
N + + ++ + R Y S Y+++N + + +N + +N
Sbjct: 26 NSHGSSGNNYRDDRKDDRYYRDDRSHYNNNNNNNNNNNNNNNNNN 70
>TAIR|locus:2074899 [details] [associations]
symbol:AT3G09620 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:CP002686 GenomeReviews:BA000014_GR
GO:GO:0003723 EMBL:AC016661 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K12811 HOGENOM:HOG000007229 IPI:IPI00534330
RefSeq:NP_187573.1 UniGene:At.53239 ProteinModelPortal:Q9SF41
SMR:Q9SF41 PaxDb:Q9SF41 PRIDE:Q9SF41 EnsemblPlants:AT3G09620.1
GeneID:820119 KEGG:ath:AT3G09620 KEGG:dosa:Os08t0154200-01
GeneFarm:1024 TAIR:At3g09620 InParanoid:Q9SF41 OMA:RGRYKVL
PhylomeDB:Q9SF41 ArrayExpress:Q9SF41 Genevestigator:Q9SF41
GermOnline:AT3G09620 Uniprot:Q9SF41
Length = 989
Score = 909 (325.0 bits), Expect = 1.5e-110, Sum P(2) = 1.5e-110
Identities = 205/458 (44%), Positives = 283/458 (61%)
Query: 45 DTDLDN-----IDYEDNDAAKAANDTGN--GAEKEEIDPLDAFMEGIHXXXXXXXXXXXX 97
DT L+N + +N+ A ++ G A+++EIDPLDAFM +
Sbjct: 215 DTKLENGGDAKMVASENETAVTVSENGGDRAADEDEIDPLDAFMNTMVLPEVEKLSNIVI 274
Query: 98 XXXXXXXDDDEEDPMESFLMAKKDVGLTLAA-DALRAGYDSDEEVYAAAKAVDAGMLDYD 156
D + + E+ AKK G AA + G DSD + Y+ K+ D LD D
Sbjct: 275 DGIL----DFKMNGKETGDQAKK--GFNKAALGRIIQGEDSDSD-YSEPKSDDDPSLDED 327
Query: 157 SDDNPVVVEKKKIEPIPALDHSLIDYEPFNKDFYQDSASISGMSEQDVMEYKKSLAIRVS 216
++ V+K K E + +DHS I+YEPF K+FY + IS M++ V Y+K L ++V
Sbjct: 328 DEEFMKRVKKTKAEKLSLVDHSKIEYEPFRKNFYIEVKDISRMTQDAVNAYRKELELKVH 387
Query: 217 GFDVPRPVKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKT 276
G DVPRP++ + G +++++ + K YEKP IQ QALPII+SGRD IG+AKTGSGKT
Sbjct: 388 GKDVPRPIQFWHQTGLTSKILDTLKKLNYEKPMPIQAQALPIIMSGRDCIGVAKTGSGKT 447
Query: 277 AAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGM 336
FVLPM+ HI DQP ++ +GPIG++ APTREL QIY + +KF+K+ GI VYGG
Sbjct: 448 LGFVLPMLRHIKDQPPVEAGDGPIGLVMAPTRELVQQIYSDIRKFSKALGIICVPVYGGS 507
Query: 337 SKLDQFKELKAGCEIVIATPGRLIDML---KMKALTMSRVTYLVLDEADRMFDLGFEPQI 393
Q ELK G EIV+ TPGR+ID+L K + RVTYLV+DEADRMFD+GFEPQI
Sbjct: 508 GVAQQISELKRGTEIVVCTPGRMIDILCTSSGKITNLRRVTYLVMDEADRMFDMGFEPQI 567
Query: 394 RSIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSD 453
IV IRPDRQT+LFSAT PR+VE LAR++L+ PV + VG + N+DITQ+V + P +
Sbjct: 568 TRIVQNIRPDRQTVLFSATFPRQVETLARKVLNKPVEIQVGGRSVVNKDITQLVEIRP-E 626
Query: 454 AEKLPWLLEKLPGMIDDGDVLVFA-SKKTTVDEIESQL 490
+E+ LLE L + G VLVF S++ ++ + +S +
Sbjct: 627 SERFSRLLELLGEWYEKGKVLVFVRSQEKSISDFKSDV 664
Score = 203 (76.5 bits), Expect = 1.5e-110, Sum P(2) = 1.5e-110
Identities = 44/98 (44%), Positives = 67/98 (68%)
Query: 508 SRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDK 567
S+ + + FKS V ++LIAT VAARGLD+K ++ VVNFD + +VHR+GRTGRAG K
Sbjct: 652 SQEKSISDFKSDVCNLLIATSVAARGLDVKELELVVNFDAPNHYEDYVHRVGRTGRAGRK 711
Query: 568 DGTAYTLVTQKEARFAGELVNSLIAAGQNVSMELMDLA 605
G A T +++ +A++A +LV +L + Q V ++ +A
Sbjct: 712 -GCAVTFISEDDAKYAPDLVKALELSEQPVPDDVKAVA 748
>RGD|708480 [details] [associations]
symbol:Ddx46 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 46"
species:10116 "Rattus norvegicus" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO;IDA] [GO:0005730 "nucleolus" evidence=IEA;ISO]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0015030 "Cajal body" evidence=IEA]
[GO:0016607 "nuclear speck" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 RGD:708480
GO:GO:0005524 GO:GO:0005634 GO:GO:0005730 GO:GO:0008380
GO:GO:0016607 GO:GO:0006397 GO:GO:0003723 GO:GO:0015030
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00610000086076 KO:K12811 CTD:9879
HOGENOM:HOG000007229 HOVERGEN:HBG081426 OrthoDB:EOG441Q9T
EMBL:U25746 EMBL:BC107590 IPI:IPI00208266 PIR:A57514
RefSeq:NP_620798.1 UniGene:Rn.3436 ProteinModelPortal:Q62780
STRING:Q62780 PhosphoSite:Q62780 PRIDE:Q62780
Ensembl:ENSRNOT00000029885 GeneID:245957 KEGG:rno:245957
UCSC:RGD:708480 InParanoid:Q62780 NextBio:623205
ArrayExpress:Q62780 Genevestigator:Q62780
GermOnline:ENSRNOG00000021637 Uniprot:Q62780
Length = 1032
Score = 1079 (384.9 bits), Expect = 3.4e-109, P = 3.4e-109
Identities = 242/568 (42%), Positives = 342/568 (60%)
Query: 48 LDNIDYEDNDAAKAANDTGNGAEKEEIDPLDAFMEGIHXXXXXXXXXXXXXXXXXXXDDD 107
L++ D +++D A+A + GN E EE+DPLDA+ME +
Sbjct: 200 LEDDDDDEDDPAEAEKE-GNEMEDEELDPLDAYMEEVKEEVKKFNMRSVKGGAGNEKKSG 258
Query: 108 EE-DPMESFLMAKKDVGLTLAADALRAGY---DSDEEVYAAAKA-VD--AGMLDYDSDDN 160
+ + + KK V + AD + D D Y++ + VD + Y +
Sbjct: 259 PTVTKVVTVVTTKKAV---VDADKKKGELMENDQDAMEYSSEEEEVDLQTALTGYQTK-- 313
Query: 161 PVVVEKKKIEPIPALDHSLIDYEPFNKDFYQDSASISGMSEQDVMEYKKSL-AIRVSGFD 219
++K +EP+ DH I+YEPF K+FY + ++ MS+++V ++ + I V G
Sbjct: 314 ----QRKLLEPV---DHGKIEYEPFRKNFYVEVPELAKMSQEEVNVFRLEMEGITVKGKG 366
Query: 220 VPRPVKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAF 279
P+P+K++ CG S ++++++ K GYEKPT IQ QA+P I+SGRD+IGIAKTGSGKT AF
Sbjct: 367 CPKPIKSWVQCGISMKILNSLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAF 426
Query: 280 VLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKL 339
+LPM HIMDQ L++ EGPI VI PTRELA QI E KKF+K+ G+RV VYGG
Sbjct: 427 LLPMFRHIMDQRSLEEGEGPIAVIMTPTRELALQITKECKKFSKTLGLRVVCVYGGTGIS 486
Query: 340 DQFKELKAGCEIVIATPGRLIDMLKM---KALTMSRVTYLVLDEADRMFDLGFEPQIRSI 396
+Q ELK G EI++ TPGR+IDML + + RVTY+VLDEADRMFD+GFEPQ+ I
Sbjct: 487 EQIAELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRI 546
Query: 397 VGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEK 456
V +RPDRQT++FSAT PR +E LAR ILS P+ V VG + D+ Q V VI + +
Sbjct: 547 VDNVRPDRQTVMFSATFPRAMEALARRILSKPIEVQVGGRSVVCSDVEQQVIVIEEEKKF 606
Query: 457 LPWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKF 516
L LLE L + G V++F K+ D + L + + +LHG DQ R I+ F
Sbjct: 607 LK-LLELLGHYQESGSVIIFVDKQEHADGLLKDLMRASYPCMSLHGGIDQYDRDSIINDF 665
Query: 517 KSGVYHVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVT 576
K+G +L+AT VAARGLD+K + VVN+ + +VHR GRTGRAG+K G AYT +T
Sbjct: 666 KNGTCKLLVATSVAARGLDVKHLILVVNYSCPNHYEDYVHRAGRTGRAGNK-GYAYTFIT 724
Query: 577 QKEARFAGELVNSLIAAGQNVSMELMDL 604
+ +AR+AG+++ +L +G V +L L
Sbjct: 725 EDQARYAGDIIKALELSGTAVPPDLEKL 752
>UNIPROTKB|Q62780 [details] [associations]
symbol:Ddx46 "Probable ATP-dependent RNA helicase DDX46"
species:10116 "Rattus norvegicus" [GO:0005524 "ATP binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 RGD:708480 GO:GO:0005524
GO:GO:0005634 GO:GO:0005730 GO:GO:0008380 GO:GO:0016607
GO:GO:0006397 GO:GO:0003723 GO:GO:0015030 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00610000086076
KO:K12811 CTD:9879 HOGENOM:HOG000007229 HOVERGEN:HBG081426
OrthoDB:EOG441Q9T EMBL:U25746 EMBL:BC107590 IPI:IPI00208266
PIR:A57514 RefSeq:NP_620798.1 UniGene:Rn.3436
ProteinModelPortal:Q62780 STRING:Q62780 PhosphoSite:Q62780
PRIDE:Q62780 Ensembl:ENSRNOT00000029885 GeneID:245957
KEGG:rno:245957 UCSC:RGD:708480 InParanoid:Q62780 NextBio:623205
ArrayExpress:Q62780 Genevestigator:Q62780
GermOnline:ENSRNOG00000021637 Uniprot:Q62780
Length = 1032
Score = 1079 (384.9 bits), Expect = 3.4e-109, P = 3.4e-109
Identities = 242/568 (42%), Positives = 342/568 (60%)
Query: 48 LDNIDYEDNDAAKAANDTGNGAEKEEIDPLDAFMEGIHXXXXXXXXXXXXXXXXXXXDDD 107
L++ D +++D A+A + GN E EE+DPLDA+ME +
Sbjct: 200 LEDDDDDEDDPAEAEKE-GNEMEDEELDPLDAYMEEVKEEVKKFNMRSVKGGAGNEKKSG 258
Query: 108 EE-DPMESFLMAKKDVGLTLAADALRAGY---DSDEEVYAAAKA-VD--AGMLDYDSDDN 160
+ + + KK V + AD + D D Y++ + VD + Y +
Sbjct: 259 PTVTKVVTVVTTKKAV---VDADKKKGELMENDQDAMEYSSEEEEVDLQTALTGYQTK-- 313
Query: 161 PVVVEKKKIEPIPALDHSLIDYEPFNKDFYQDSASISGMSEQDVMEYKKSL-AIRVSGFD 219
++K +EP+ DH I+YEPF K+FY + ++ MS+++V ++ + I V G
Sbjct: 314 ----QRKLLEPV---DHGKIEYEPFRKNFYVEVPELAKMSQEEVNVFRLEMEGITVKGKG 366
Query: 220 VPRPVKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAF 279
P+P+K++ CG S ++++++ K GYEKPT IQ QA+P I+SGRD+IGIAKTGSGKT AF
Sbjct: 367 CPKPIKSWVQCGISMKILNSLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAF 426
Query: 280 VLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKL 339
+LPM HIMDQ L++ EGPI VI PTRELA QI E KKF+K+ G+RV VYGG
Sbjct: 427 LLPMFRHIMDQRSLEEGEGPIAVIMTPTRELALQITKECKKFSKTLGLRVVCVYGGTGIS 486
Query: 340 DQFKELKAGCEIVIATPGRLIDMLKM---KALTMSRVTYLVLDEADRMFDLGFEPQIRSI 396
+Q ELK G EI++ TPGR+IDML + + RVTY+VLDEADRMFD+GFEPQ+ I
Sbjct: 487 EQIAELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRI 546
Query: 397 VGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEK 456
V +RPDRQT++FSAT PR +E LAR ILS P+ V VG + D+ Q V VI + +
Sbjct: 547 VDNVRPDRQTVMFSATFPRAMEALARRILSKPIEVQVGGRSVVCSDVEQQVIVIEEEKKF 606
Query: 457 LPWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKF 516
L LLE L + G V++F K+ D + L + + +LHG DQ R I+ F
Sbjct: 607 LK-LLELLGHYQESGSVIIFVDKQEHADGLLKDLMRASYPCMSLHGGIDQYDRDSIINDF 665
Query: 517 KSGVYHVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVT 576
K+G +L+AT VAARGLD+K + VVN+ + +VHR GRTGRAG+K G AYT +T
Sbjct: 666 KNGTCKLLVATSVAARGLDVKHLILVVNYSCPNHYEDYVHRAGRTGRAGNK-GYAYTFIT 724
Query: 577 QKEARFAGELVNSLIAAGQNVSMELMDL 604
+ +AR+AG+++ +L +G V +L L
Sbjct: 725 EDQARYAGDIIKALELSGTAVPPDLEKL 752
>TAIR|locus:2162022 [details] [associations]
symbol:AT5G63120 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0000184 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
EMBL:AB008265 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268804 KO:K12823 EMBL:AY060589
EMBL:BT000610 EMBL:AK226611 EMBL:AJ010476 IPI:IPI00532778
IPI:IPI00537266 PIR:T51349 RefSeq:NP_568964.1 RefSeq:NP_974985.1
UniGene:At.27361 ProteinModelPortal:Q8W4R3 SMR:Q8W4R3 PaxDb:Q8W4R3
PRIDE:Q8W4R3 EnsemblPlants:AT5G63120.2 GeneID:836432
KEGG:ath:AT5G63120 GeneFarm:979 TAIR:At5g63120 InParanoid:Q8W4R3
OMA:FTHANAK PhylomeDB:Q8W4R3 ProtClustDB:CLSN2690069
Genevestigator:Q8W4R3 GermOnline:AT5G63120 Uniprot:Q8W4R3
Length = 591
Score = 1078 (384.5 bits), Expect = 4.3e-109, P = 4.3e-109
Identities = 219/445 (49%), Positives = 295/445 (66%)
Query: 166 KKKIEPIPALDHSLIDYEPFNKDFYQDSASISGMSEQDVMEYKKSLAIRVSGFDVPRPVK 225
K++++ + + + F K+FY +S ++ M+EQDV Y+ I V G DVP+P+K
Sbjct: 106 KRELDSVSLPKQNFGNLVHFEKNFYVESPTVQAMTEQDVAMYRTERDISVEGRDVPKPMK 165
Query: 226 TFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIV 285
F+D F ++ AI+K G+ +PT IQ Q P+ L GRD+IGIA+TGSGKT A++LP +V
Sbjct: 166 MFQDANFPDNILEAIAKLGFTEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPALV 225
Query: 286 HIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKEL 345
H+ QP L +++GPI +I APTRELA QI E++KF G+R + +YGG K Q ++L
Sbjct: 226 HVSAQPRLGQDDGPIVLILAPTRELAVQIQEESRKFGLRSGVRSTCIYGGAPKGPQIRDL 285
Query: 346 KAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQ 405
+ G EIVIATPGRLIDML+ + + RVTYLVLDEADRM D+GFEPQIR IV QIRPDRQ
Sbjct: 286 RRGVEIVIATPGRLIDMLECQHTNLKRVTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQ 345
Query: 406 TLLFSATMPRKVEKLAREILSDPVRVTVGEVGM-ANEDITQVVHVIPSDAEKLPWLLEKL 464
TLL+SAT PR+VE LAR+ L DP + +G + AN+ I QV+ ++P+ EK LL L
Sbjct: 346 TLLWSATWPREVETLARQFLRDPYKAIIGSTDLKANQSINQVIEIVPTP-EKYNRLLTLL 404
Query: 465 PGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVL 524
++D +L+F K D++ QL G+ A A+HGDK Q+ R +L +FKSG ++
Sbjct: 405 KQLMDGSKILIFVETKRGCDQVTRQLRMDGWPALAIHGDKTQSERDRVLAEFKSGRSPIM 464
Query: 525 IATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAG 584
ATDVAARGLD+K IK VVN+D ++ ++HRIGRTGRAG K G A+T T A+FA
Sbjct: 465 TATDVAARGLDVKDIKCVVNYDFPNTLEDYIHRIGRTGRAGAK-GMAFTFFTHDNAKFAR 523
Query: 585 ELVNSLIAAGQNVSMELMDLAMKDG 609
ELV L AGQ V L L G
Sbjct: 524 ELVKILQEAGQVVPPTLSALVRSSG 548
>ASPGD|ASPL0000055571 [details] [associations]
symbol:AN1266 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] [GO:0044732 "mitotic spindle pole body" evidence=IEA]
[GO:0005829 "cytosol" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0008380
EMBL:BN001308 GO:GO:0006397 GO:GO:0003676 EMBL:AACD01000017
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 KO:K12811
OMA:SVVAPEI HOGENOM:HOG000007229 OrthoDB:EOG40CMR1
RefSeq:XP_658870.1 ProteinModelPortal:Q5BDW4
EnsemblFungi:CADANIAT00001356 GeneID:2877043 KEGG:ani:AN1266.2
Uniprot:Q5BDW4
Length = 1173
Score = 1058 (377.5 bits), Expect = 4.4e-109, Sum P(2) = 4.4e-109
Identities = 245/610 (40%), Positives = 353/610 (57%)
Query: 10 GFNINRQTSYSFEQSQAPQRLYVPPSSRYSHDNYEDTD-LDNIDYE-DNDAAKAANDTGN 67
GF T E+ P L +S+ + N +D D +D D E + DAA AA
Sbjct: 325 GFGEEESTRRKLERLPTPP-LDDADASKTAETNADDDDDVDMQDGETEEDAAAAARVA-- 381
Query: 68 GAEKEEIDPLDAFMEGIHXXXXXXXXXXXXXXXXXXXDDDEE--DPMESFL--MA----- 118
AE+ E + L E + D EE DP+++F+ +A
Sbjct: 382 -AERRE-ERLQN--ESLTKTTNGNTTAKAEEADKMEVDAQEEELDPLDAFMSELAESAPP 437
Query: 119 KKDVGLTLA-ADALRAGYDSDEEVYAAAKAVDAGMLDYDSDDNPVVVEK-KKIEPIPALD 176
KK G + A A + + +V + AV G D++D + K KK + IP +D
Sbjct: 438 KKKAGAKFSKAQEPEAIFGDEHDV--SMTAVGEG----DAEDFLAIASKAKKKKDIPTVD 491
Query: 177 HSLIDYEPFNKDFYQDSASISGMSEQDVMEYKKSL-AIRVSGFDVPRPVKTFEDCGFSTQ 235
H+ ++YEPF + FY + + ++ MSE++ + L I+V G DVP+PV+ + CG Q
Sbjct: 492 HNKVEYEPFRRKFYTEPSDLAQMSEEEAANLRLELDGIKVRGLDVPKPVQKWSQCGLGIQ 551
Query: 236 LMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQK 295
+ I K G+ TSIQ QA+P I+SGRD+IG+AKTGSGKT AF++PM HI DQ L+
Sbjct: 552 TLDVIDKLGFASLTSIQAQAIPAIMSGRDVIGVAKTGSGKTMAFLIPMFRHIKDQRPLEN 611
Query: 296 EEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIAT 355
EGPIG+I PTRELA QI+ + K F K+ +R YGG DQ ELK G EI++ T
Sbjct: 612 MEGPIGLIMTPTRELATQIHKDCKPFLKALNLRAVCAYGGAPIKDQIAELKRGAEIIVCT 671
Query: 356 PGRLIDMLKMKA---LTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSAT 412
PGR+ID+L A + RVTY+VLDEADRMFD+GFEPQ+ I+ +RPDRQT+LFSAT
Sbjct: 672 PGRMIDLLAANAGRVTNLRRVTYVVLDEADRMFDMGFEPQVMKILSNVRPDRQTVLFSAT 731
Query: 413 MPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEKLPGMI---- 468
PR +E LAR+ L+ P+ + VG + +ITQ+V V ++ +K LLE L +
Sbjct: 732 FPRNMEALARKTLTKPIEIVVGGRSVVAPEITQIVEVC-NEEKKFVRLLELLGNLYSTDE 790
Query: 469 -DDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIAT 527
+D L+F ++ D + +L +KG+ ++HG KDQ R ++ FK+G++ VLIAT
Sbjct: 791 NEDARSLIFVDRQEAADTLLRELMRKGYPCMSIHGGKDQIDRDSTIEDFKAGIFPVLIAT 850
Query: 528 DVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELV 587
VAARGLD+K +K VVN+D ++ +VHR GRTGRAG+ GTA T +T+ + R++ ++
Sbjct: 851 SVAARGLDVKQLKLVVNYDAPNHLEDYVHRAGRTGRAGNT-GTAVTFLTEDQERYSVDIA 909
Query: 588 NSLIAAGQNV 597
+L +GQ V
Sbjct: 910 KALKQSGQEV 919
Score = 40 (19.1 bits), Expect = 4.4e-109, Sum P(2) = 4.4e-109
Identities = 12/42 (28%), Positives = 21/42 (50%)
Query: 15 RQTSYSFEQSQAPQRLYVPPSSRYSHDNYEDTDLDNIDYEDN 56
R S+ +S++P+R Y R D+Y D ++D D+
Sbjct: 34 RDDGRSYRRSRSPERRY-RERDR-DRDSYRRRD-HSVDRRDS 72
>UNIPROTKB|A4RN46 [details] [associations]
symbol:PRP5 "Pre-mRNA-processing ATP-dependent RNA helicase
PRP5" species:242507 "Magnaporthe oryzae 70-15" [GO:0043581
"mycelium development" evidence=IEP] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0008380 GO:GO:0006397 GO:GO:0003676
GO:GO:0043581 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
EMBL:CM001232 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 OrthoDB:EOG40CMR1 RefSeq:XP_003713486.1
ProteinModelPortal:A4RN46 EnsemblFungi:MGG_15532T0 GeneID:12987087
KEGG:mgr:MGG_15532 Uniprot:A4RN46
Length = 1012
Score = 1048 (374.0 bits), Expect = 9.1e-109, Sum P(2) = 9.1e-109
Identities = 240/589 (40%), Positives = 352/589 (59%)
Query: 35 SSRYSHDNYEDTDLD-NIDYEDNDAAKAANDTGNGAEKEEIDPLDAFMEGIHXXXXXXXX 93
++R +H+ E+ L ++ E ++A AA NG+E + +A E
Sbjct: 187 AARAAHERREERILQQSMAMETDEANPAAEGQVNGSEPA-VSSANAPEEA------QAKP 239
Query: 94 XXXXXXXXXXXDDDEEDPMESFLM---------AKKDVGLTLAADALRA--GYDSDEEVY 142
DDDE DP+++F+ A K V +A L Y SD++ +
Sbjct: 240 QTDSMDVDTKEDDDEVDPLDAFMADLTEPSFGPASKPVKTLSSAKVLPTPEAYFSDDDEF 299
Query: 143 AAAKAVDAGMLDYDSDDNPVVVEKKKIEPIPALDHSLIDYEPFNKDFYQDSASISGMSEQ 202
A+ G+ D+ + K+K + IP +D+S +D P K+F+ + +S M+E
Sbjct: 300 GAS--TKEGV---DAKAIMAMAAKRKKKEIPTIDYSKLDIVPVRKNFWVEPYELSEMTEA 354
Query: 203 DVMEYKKSL-AIRVSGFDVPRPVKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILS 261
+V E + L I+VSG DVP+PV+ + CG + ++ I+K Y+KPT+IQ QALP+I+S
Sbjct: 355 EVAELRLELDGIKVSGKDVPKPVQKWSLCGLTRPILDVIAKLEYDKPTAIQMQALPVIMS 414
Query: 262 GRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKF 321
GRD++G+AKTGSGKT AF+LPM HI DQ ++ EGPIG+I PTRELA QI+ + K F
Sbjct: 415 GRDVVGVAKTGSGKTMAFLLPMFRHIKDQEPVKDNEGPIGLILTPTRELAVQIFRDCKPF 474
Query: 322 AKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKM---KALTMSRVTYLVL 378
K+ G+R YGG DQ +LK G EIV+AT GR+ID+L + +++ R TY+VL
Sbjct: 475 LKTLGLRAVCAYGGPPIKDQIADLKRGAEIVVATTGRMIDLLAANQGRVVSLRRTTYIVL 534
Query: 379 DEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGM 438
DEADRMFD+GFEPQ+ I +RPDRQT+LFSATMP+ ++ L +++L +PV + VG +
Sbjct: 535 DEADRMFDMGFEPQVMKIFANVRPDRQTVLFSATMPKIMDALVKKVLKNPVEIEVGGKSV 594
Query: 439 ANEDITQVVHVIPSDAEKLPWLLEKLPGMI-DDGDV--LVFASKKTTVDEIESQLAQKGF 495
+ITQ+V I + K LLE L + DD DV L+F ++ DE+ +L +KG+
Sbjct: 595 VASEITQIVE-IRDEKSKFNRLLELLGELYKDDDDVRSLIFVERQEKADELLRELLRKGY 653
Query: 496 KAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVNFDIARDMDMHV 555
+LHG KDQ R + FKSGV V+IAT VAARGLD+K +K VVN+D ++ +V
Sbjct: 654 GCMSLHGGKDQVDRDSTISDFKSGVCPVMIATSVAARGLDVKQLKLVVNYDAPNHLEDYV 713
Query: 556 HRIGRTGRAGDKDGTAYTLVTQKEARFAGELVNSLIAAGQNVSMELMDL 604
HR GRTGRAG+ GTA T VT+++ A + +L +GQ V +L+++
Sbjct: 714 HRAGRTGRAGNT-GTAVTFVTEEQENCAIGIAKALEQSGQPVPEKLIEM 761
Score = 47 (21.6 bits), Expect = 9.1e-109, Sum P(2) = 9.1e-109
Identities = 18/63 (28%), Positives = 31/63 (49%)
Query: 2 TKRKFGFEGFNINRQTSYSFEQSQAPQ-RLYVPPSSRY-SHDNYEDTDLDNIDYEDNDAA 59
TKRK + I+++ + ++ P L + Y + D+ ED+D DN + +AA
Sbjct: 131 TKRKLNLDDEEISKR-----KLAKLPDLSLETTDDAPYVNQDDDEDSDGDNFAGTEEEAA 185
Query: 60 KAA 62
AA
Sbjct: 186 AAA 188
>MGI|MGI:1920895 [details] [associations]
symbol:Ddx46 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 46"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISO] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 MGI:MGI:1920895
GO:GO:0005524 GO:GO:0005730 GO:GO:0008380 GO:GO:0016607
GO:GO:0006397 GO:GO:0003723 GO:GO:0015030 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00610000086076
KO:K12811 CTD:9879 HOGENOM:HOG000007229 HOVERGEN:HBG081426
OrthoDB:EOG441Q9T ChiTaRS:DDX46 EMBL:AK129220 EMBL:BC026492
EMBL:BC092240 IPI:IPI00468896 IPI:IPI00660556 RefSeq:NP_666087.3
UniGene:Mm.202725 ProteinModelPortal:Q569Z5 SMR:Q569Z5
STRING:Q569Z5 PhosphoSite:Q569Z5 PaxDb:Q569Z5 PRIDE:Q569Z5
Ensembl:ENSMUST00000172272 GeneID:212880 KEGG:mmu:212880
UCSC:uc011yzx.1 InParanoid:Q569Z5 OMA:IEEENKF NextBio:373723
Bgee:Q569Z5 CleanEx:MM_DDX46 Genevestigator:Q569Z5
GermOnline:ENSMUSG00000021500 Uniprot:Q569Z5
Length = 1032
Score = 1073 (382.8 bits), Expect = 1.5e-108, P = 1.5e-108
Identities = 241/568 (42%), Positives = 341/568 (60%)
Query: 48 LDNIDYEDNDAAKAANDTGNGAEKEEIDPLDAFMEGIHXXXXXXXXXXXXXXXXXXXDDD 107
L++ D +++D A+A + G E EE+DPLDA+ME +
Sbjct: 200 LEDDDDDEDDPAEAEKE-GTEMEDEELDPLDAYMEEVKEEVKKFNMRSVKGGAGNEKKSG 258
Query: 108 EE-DPMESFLMAKKDVGLTLAADALRAGY---DSDEEVYAAAKA-VD--AGMLDYDSDDN 160
+ + + KK V + AD + D D Y++ + VD + Y +
Sbjct: 259 PTVTKVVTVVTTKKAV---VDADKKKGELMENDQDAMEYSSEEEEVDLQTALTGYQTK-- 313
Query: 161 PVVVEKKKIEPIPALDHSLIDYEPFNKDFYQDSASISGMSEQDVMEYKKSL-AIRVSGFD 219
++K +EP+ DH I+YEPF K+FY + ++ MS+++V ++ + I V G
Sbjct: 314 ----QRKLLEPV---DHGKIEYEPFRKNFYVEVPELAKMSQEEVNVFRLEMEGITVKGKG 366
Query: 220 VPRPVKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAF 279
P+P+K++ CG S ++++++ K GYEKPT IQ QA+P I+SGRD+IGIAKTGSGKT AF
Sbjct: 367 CPKPIKSWVQCGISMKILNSLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAF 426
Query: 280 VLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKL 339
+LPM HIMDQ L++ EGPI VI PTRELA QI E KKF+K+ G+RV VYGG
Sbjct: 427 LLPMFRHIMDQRSLEEGEGPIAVIMTPTRELALQITKECKKFSKTLGLRVVCVYGGTGIS 486
Query: 340 DQFKELKAGCEIVIATPGRLIDMLKM---KALTMSRVTYLVLDEADRMFDLGFEPQIRSI 396
+Q ELK G EI++ TPGR+IDML + + RVTY+VLDEADRMFD+GFEPQ+ I
Sbjct: 487 EQIAELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRI 546
Query: 397 VGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEK 456
V +RPDRQT++FSAT PR +E LAR ILS P+ V VG + D+ Q V VI + +
Sbjct: 547 VDNVRPDRQTVMFSATFPRAMEALARRILSKPIEVQVGGRSVVCSDVEQQVIVIEEEKKF 606
Query: 457 LPWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKF 516
L LLE L + G V++F K+ D + L + + +LHG DQ R I+ F
Sbjct: 607 LK-LLELLGHYQESGSVIIFVDKQEHADGLLKDLMRASYPCMSLHGGIDQYDRDSIINDF 665
Query: 517 KSGVYHVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVT 576
K+G +L+AT VAARGLD+K + VVN+ + +VHR GRTGRAG+K G AYT +T
Sbjct: 666 KNGTCKLLVATSVAARGLDVKHLILVVNYSCPNHYEDYVHRAGRTGRAGNK-GYAYTFIT 724
Query: 577 QKEARFAGELVNSLIAAGQNVSMELMDL 604
+ +AR+AG+++ +L +G V +L L
Sbjct: 725 EDQARYAGDIIKALELSGTAVPPDLEKL 752
>FB|FBgn0030631 [details] [associations]
symbol:CG6227 species:7227 "Drosophila melanogaster"
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=ISS] [GO:0003724 "RNA helicase
activity" evidence=ISS] [GO:0005681 "spliceosomal complex"
evidence=ISS] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=ISS] [GO:0005524 "ATP binding" evidence=IEA] [GO:0000381
"regulation of alternative mRNA splicing, via spliceosome"
evidence=IMP] [GO:0005634 "nucleus" evidence=IC] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:AE014298 GO:GO:0005681 GO:GO:0003676 GO:GO:0000398
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
GO:GO:0000381 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0016779
HSSP:Q58083 GeneTree:ENSGT00610000086076 KO:K12811 OMA:RGRYKVL
EMBL:FJ764847 EMBL:FJ764848 EMBL:FJ764851 EMBL:FJ764853
EMBL:FJ764855 EMBL:FJ764858 FlyBase:FBgn0030631 EMBL:BT016090
RefSeq:NP_573020.2 UniGene:Dm.168 SMR:Q9VXW2 IntAct:Q9VXW2
EnsemblMetazoa:FBtr0074011 GeneID:32464 KEGG:dme:Dmel_CG6227
UCSC:CG6227-RA InParanoid:Q9VXW2 GenomeRNAi:32464 NextBio:778600
Uniprot:Q9VXW2
Length = 1224
Score = 1025 (365.9 bits), Expect = 7.2e-107, Sum P(2) = 7.2e-107
Identities = 208/453 (45%), Positives = 292/453 (64%)
Query: 156 DSDDNPVVVEKKKIEPIPALDHSLIDYEPFNKDFYQDSASISGMSEQDVMEYKKSL-AIR 214
D D V + K + + +DHS + Y PF K+FY + ++ M+ DV +Y+ L I+
Sbjct: 440 DIRDTAVNLAMKHRKELAKIDHSSVTYAPFRKNFYVEVPELTRMTAADVEKYRSDLEGIQ 499
Query: 215 VSGFDVPRPVKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSG 274
V G P+P+KT+ CG S + M + + G+EKPT IQCQA+P I+SGRD+IGIAKTGSG
Sbjct: 500 VKGKGCPKPIKTWAQCGVSKKEMEVLRRLGFEKPTPIQCQAIPAIMSGRDLIGIAKTGSG 559
Query: 275 KTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYG 334
KT AF+LPM HI+DQP ++ +G I +I APTREL QI + +KF+KS G+R VYG
Sbjct: 560 KTLAFILPMFRHILDQPSMEDGDGAIAIIMAPTRELCMQIGKDIRKFSKSLGLRPVCVYG 619
Query: 335 GMSKLDQFKELKAGCEIVIATPGRLIDMLKM---KALTMSRVTYLVLDEADRMFDLGFEP 391
G +Q ELK G EI++ TPGR+IDML + + RVTY+VLDEADRMFD+GFEP
Sbjct: 620 GTGISEQIAELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEP 679
Query: 392 QIRSIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIP 451
Q+ I+ +RPDRQT++FSAT PR++E LAR IL P+ V VG + +++ Q V ++
Sbjct: 680 QVMRIIDNVRPDRQTVMFSATFPRQMEALARRILKKPIEVIVGGRSVVCKEVEQHVVILN 739
Query: 452 SDAEKLPWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRME 511
DA K LLE L + G ++VF K+ D + L + + +LHG DQ R
Sbjct: 740 DDA-KFFKLLELLGIYQEAGSIIVFVDKQENADILLRDLMKASYPCMSLHGGIDQFDRDS 798
Query: 512 ILQKFKSGVYHVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTA 571
+ FKSG +LIAT VAARGLD+K + VVN+D+ + +VHR GRTGRAG K G+A
Sbjct: 799 TIIDFKSGKVRLLIATSVAARGLDVKDLILVVNYDVPNHYEDYVHRCGRTGRAGKK-GSA 857
Query: 572 YTLVTQKEARFAGELVNSLIAAGQNVSMELMDL 604
YT +T +++R+AG+++ ++ +G + EL L
Sbjct: 858 YTFITPEQSRYAGDIIRAMDLSGTLIPAELQAL 890
Score = 52 (23.4 bits), Expect = 7.2e-107, Sum P(2) = 7.2e-107
Identities = 11/18 (61%), Positives = 15/18 (83%)
Query: 69 AEKE-EIDPLDAFMEGIH 85
AE E EIDPLDA+M+ ++
Sbjct: 367 AEPEDEIDPLDAYMQEVN 384
Score = 37 (18.1 bits), Expect = 2.8e-105, Sum P(2) = 2.8e-105
Identities = 10/37 (27%), Positives = 20/37 (54%)
Query: 45 DTDLDNIDYEDNDAAKAANDTG-NGAEK--EEIDPLD 78
+ ++D+++Y D + DT N A K +E+ +D
Sbjct: 424 EQNMDSLEYSSEDELEDIRDTAVNLAMKHRKELAKID 460
>WB|WBGene00018776 [details] [associations]
symbol:F53H1.1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0040010 "positive regulation of growth rate"
evidence=IMP] [GO:0000003 "reproduction" evidence=IMP] [GO:0002009
"morphogenesis of an epithelium" evidence=IMP] [GO:0040035
"hermaphrodite genitalia development" evidence=IMP] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0006898 "receptor-mediated endocytosis" evidence=IMP]
[GO:0040018 "positive regulation of multicellular organism growth"
evidence=IMP] [GO:0040011 "locomotion" evidence=IMP] [GO:0040007
"growth" evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0009792
GO:GO:0002009 GO:GO:0006898 GO:GO:0040007 GO:GO:0040010
GO:GO:0002119 GO:GO:0040011 GO:GO:0040018 GO:GO:0003676
GO:GO:0040035 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HSSP:P10081 GeneTree:ENSGT00610000086076 KO:K12811
HOGENOM:HOG000007229 OMA:IEEENKF EMBL:FO081458
RefSeq:NP_001033411.1 ProteinModelPortal:Q965K2 SMR:Q965K2
PaxDb:Q965K2 PRIDE:Q965K2 EnsemblMetazoa:F53H1.1 GeneID:176943
KEGG:cel:CELE_F53H1.1 UCSC:F53H1.1 CTD:176943 WormBase:F53H1.1
InParanoid:Q965K2 NextBio:894678 ArrayExpress:Q965K2 Uniprot:Q965K2
Length = 970
Score = 1051 (375.0 bits), Expect = 3.1e-106, P = 3.1e-106
Identities = 238/527 (45%), Positives = 327/527 (62%)
Query: 106 DDEEDPMESFL--MAKKDVGLTLAADALRAGYDSDEEVYAAAKAVDAGMLDYDSDDNPVV 163
DDEEDP+++F+ +A K+ T + +G + V + G + + D+ +V
Sbjct: 173 DDEEDPLDAFMKEIATKNAKKTGNSTQKASGIVTI--VQEEKPEPEKGQVLENEDNMDMV 230
Query: 164 VEKKKIEPIPA-----------LDHSLIDYEPFNKDFYQDSASISGMSEQDVMEYKKSL- 211
++ IE A DHS + Y F K+FY ++ I M++ +V Y++ L
Sbjct: 231 IDDFDIETAAASLCHKGRMLAQTDHSKVYYRKFKKNFYIETEEIRRMTKAEVKAYREELD 290
Query: 212 AIRVSGFDVPRPVKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKT 271
+I V G D P+P+KT+ CG + ++M+ + K Y KPTSIQ QA+P I+SGRD+IGIAKT
Sbjct: 291 SITVKGIDCPKPIKTWAQCGVNLKMMNVLKKFEYSKPTSIQAQAIPSIMSGRDVIGIAKT 350
Query: 272 GSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSA 331
GSGKT AF+LPM HI+DQPEL++ +GPI VI APTRELA Q Y E KFAK G++V+
Sbjct: 351 GSGKTLAFLLPMFRHILDQPELEEGDGPIAVILAPTRELAMQTYKEANKFAKPLGLKVAC 410
Query: 332 VYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKM---KALTMSRVTYLVLDEADRMFDLG 388
YGG+ +Q +LK G EIV+ TPGR+ID+L K + RVTYLVLDEADRMFD G
Sbjct: 411 TYGGVGISEQIADLKRGAEIVVCTPGRMIDVLAANSGKVTNLRRVTYLVLDEADRMFDKG 470
Query: 389 FEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVH 448
FEPQI +V IRPD+QT+LFSAT PR +E LAR++L PV + VG + DITQ
Sbjct: 471 FEPQIMKVVNNIRPDKQTVLFSATFPRHMEALARKVLDKPVEILVGGKSVVCSDITQNA- 529
Query: 449 VIPSDAEKLPWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAA-LHGDKDQA 507
VI ++ +K LLE L ++G +VF K+ D+I QL + G+ + A LHG DQ
Sbjct: 530 VICAEHQKFLKLLELLGMYYEEGSSIVFVDKQEKADDIVDQLMRTGYNSVAPLHGGIDQH 589
Query: 508 SRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDK 567
R + FK+GV VL+AT VAARGLD+K++ VVN+D + +VHR+GRTGRAG K
Sbjct: 590 DRDSSIADFKTGVIKVLVATSVAARGLDVKNLILVVNYDCPNHYEDYVHRVGRTGRAGRK 649
Query: 568 DGTAYTLVT-QKEARFAGELVNSLIAAGQNVSMELMDLAMKDGRFRS 613
G AYT V + + + AGE+ + AG +L AM + RF+S
Sbjct: 650 -GYAYTFVLPEHQEKMAGEICRAFETAGCKPPADLK--AMFE-RFKS 692
>TAIR|locus:2035741 [details] [associations]
symbol:RH20 "RNA helicase 20" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISM]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA;ISS]
[GO:0005829 "cytosol" evidence=IDA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005829 GO:GO:0005524 GO:GO:0005634
GO:GO:0000184 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268804 KO:K12823
EMBL:AC073944 EMBL:AY062745 EMBL:AY128786 EMBL:AJ010470
IPI:IPI00528901 PIR:B96593 PIR:T51345 RefSeq:NP_175911.1
UniGene:At.20425 ProteinModelPortal:Q9C718 SMR:Q9C718 PaxDb:Q9C718
PRIDE:Q9C718 ProMEX:Q9C718 EnsemblPlants:AT1G55150.1 GeneID:841958
KEGG:ath:AT1G55150 GeneFarm:937 TAIR:At1g55150 InParanoid:Q9C718
OMA:CANHNIL PhylomeDB:Q9C718 ProtClustDB:CLSN2682455
Genevestigator:Q9C718 GermOnline:AT1G55150 Uniprot:Q9C718
Length = 501
Score = 1045 (372.9 bits), Expect = 1.4e-105, P = 1.4e-105
Identities = 211/422 (50%), Positives = 288/422 (68%)
Query: 184 PFNKDFYQDSASISGMSEQDVMEYKKSLAIRVSGFDVPRPVKTFEDCGFSTQLMHAISKQ 243
PF K+FY +S +++ M++ +V EY+K I V G D+P+PVK+F D GF ++ + K
Sbjct: 58 PFEKNFYVESPAVAAMTDTEVEEYRKLREITVEGKDIPKPVKSFRDVGFPDYVLEEVKKA 117
Query: 244 GYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVI 303
G+ +PT IQ Q P+ + GRD+IGIA+TGSGKT +++LP IVH+ QP L +GPI ++
Sbjct: 118 GFTEPTPIQSQGWPMAMKGRDLIGIAETGSGKTLSYLLPAIVHVNAQPMLAHGDGPIVLV 177
Query: 304 CAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDML 363
APTRELA QI E KF S I+ + +YGG+ K Q ++L+ G EIVIATPGRLIDM+
Sbjct: 178 LAPTRELAVQIQQEASKFGSSSKIKTTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMM 237
Query: 364 KMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLARE 423
+ + RVTYLVLDEADRM D+GF+PQIR IV IRPDRQTL +SAT P++VE+L+++
Sbjct: 238 ESNNTNLRRVTYLVLDEADRMLDMGFDPQIRKIVSHIRPDRQTLYWSATWPKEVEQLSKK 297
Query: 424 ILSDPVRVTVGEVGM-ANEDITQVVHVIPSDAEKLPWLLEKLPGMIDDGDVLVFASKKTT 482
L +P +V +G + AN I Q+V VI S+++K L++ L ++D +LVF K
Sbjct: 298 FLYNPYKVIIGSSDLKANRAIRQIVDVI-SESQKYNKLVKLLEDIMDGSRILVFLDTKKG 356
Query: 483 VDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSV 542
D+I QL G+ A ++HGDK QA R +L +F+SG ++ ATDVAARGLD+K +K V
Sbjct: 357 CDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFRSGKSPIMTATDVAARGLDVKDVKYV 416
Query: 543 VNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELVNSLIAAGQNVSMELM 602
+N+D ++ +VHRIGRTGRAG K GTAYT T ARFA EL N L AGQ VS EL
Sbjct: 417 INYDFPGSLEDYVHRIGRTGRAGAK-GTAYTFFTVANARFAKELTNILQEAGQKVSPELA 475
Query: 603 DL 604
+
Sbjct: 476 SM 477
>SGD|S000005056 [details] [associations]
symbol:DBP2 "ATP-dependent RNA helicase of the DEAD-box
protein family" species:4932 "Saccharomyces cerevisiae" [GO:0071042
"nuclear polyadenylation-dependent mRNA catabolic process"
evidence=IGI;IMP] [GO:0005739 "mitochondrion" evidence=IDA]
[GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0008186 "RNA-dependent
ATPase activity" evidence=IMP;IDA] [GO:0005737 "cytoplasm"
evidence=IEA;IDA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000184 "nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=IEA;IPI] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0006364
"rRNA processing" evidence=IEA;IMP] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0042254 "ribosome biogenesis"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003724 "RNA helicase activity" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 SGD:S000005056 GO:GO:0005739 GO:GO:0005524
GO:GO:0005634 GO:GO:0000184 EMBL:BK006947 GO:GO:0003723 EMBL:Z69382
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0008026 eggNOG:COG0513 GO:GO:0003724 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268804 KO:K12823 OMA:IDAMSGY
OrthoDB:EOG47SWP6 EMBL:X52649 EMBL:Z71388 EMBL:M64991 PIR:S13757
RefSeq:NP_014287.3 RefSeq:NP_014296.4 ProteinModelPortal:P24783
SMR:P24783 DIP:DIP-2438N IntAct:P24783 MINT:MINT-636962
STRING:P24783 PaxDb:P24783 PeptideAtlas:P24783 EnsemblFungi:YNL112W
GeneID:855611 GeneID:855620 KEGG:sce:YNL103W KEGG:sce:YNL112W
CYGD:YNL112w GeneTree:ENSGT00660000095174 NextBio:979789
Genevestigator:P24783 GermOnline:YNL112W Uniprot:P24783
Length = 546
Score = 1025 (365.9 bits), Expect = 1.8e-103, P = 1.8e-103
Identities = 206/433 (47%), Positives = 293/433 (67%)
Query: 173 PALDHSLIDYEPFNKDFYQDSASISGMSEQDVMEYKKSLAIRVSGFDVPRPVKTFEDCGF 232
P D L F K+FY + S+ S+ ++ +++K + +SG D+P+P+ TF++ GF
Sbjct: 61 PNWDEELPKLPTFEKNFYVEHESVRDRSDSEIAQFRKENEMTISGHDIPKPITTFDEAGF 120
Query: 233 STQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPE 292
+++ + +G++KPT IQCQ P+ LSGRD++GIA TGSGKT ++ LP IVHI QP
Sbjct: 121 PDYVLNEVKAEGFDKPTGIQCQGWPMALSGRDMVGIAATGSGKTLSYCLPGIVHINAQPL 180
Query: 293 LQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIV 352
L +GPI ++ APTRELA QI E KF S IR + VYGG+ K Q ++L G EIV
Sbjct: 181 LAPGDGPIVLVLAPTRELAVQIQTECSKFGHSSRIRNTCVYGGVPKSQQIRDLSRGSEIV 240
Query: 353 IATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSAT 412
IATPGRLIDML++ + RVTYLVLDEADRM D+GFEPQIR IV QIRPDRQTL++SAT
Sbjct: 241 IATPGRLIDMLEIGKTNLKRVTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSAT 300
Query: 413 MPRKVEKLAREILSDPVRVTVGEVGM-ANEDITQVVHVIPSDAEKLPWLLEKLPGMIDDG 471
P++V++LA + L+DP++V VG + + A+ +ITQ+V V+ SD EK L + L D
Sbjct: 301 WPKEVKQLAADYLNDPIQVQVGSLELSASHNITQIVEVV-SDFEKRDRLNKYLETASQDN 359
Query: 472 D--VLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDV 529
+ L+FAS K D+I L + G+ A A+HGDKDQ R +LQ+F++G +++ATDV
Sbjct: 360 EYKTLIFASTKRMCDDITKYLREDGWPALAIHGDKDQRERDWVLQEFRNGRSPIMVATDV 419
Query: 530 AARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELVNS 589
AARG+D+K I V+N+D+ +++ +VHRIGRTGRAG GTA + T++ +L++
Sbjct: 420 AARGIDVKGINYVINYDMPGNIEDYVHRIGRTGRAG-ATGTAISFFTEQNKGLGAKLISI 478
Query: 590 LIAAGQNVSMELM 602
+ A QN+ EL+
Sbjct: 479 MREANQNIPPELL 491
>CGD|CAL0003204 [details] [associations]
symbol:DBP2 species:5476 "Candida albicans" [GO:0005730
"nucleolus" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0005739 "mitochondrion" evidence=IEA] [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=IEA] [GO:0006364 "rRNA processing" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 CGD:CAL0003204 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0000184 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 EMBL:AACQ01000245
EMBL:AACQ01000246 RefSeq:XP_710694.1 RefSeq:XP_710708.1
ProteinModelPortal:Q59LU0 PRIDE:Q59LU0 GeneID:3647692
GeneID:3647705 KEGG:cal:CaO19.171 KEGG:cal:CaO19.7804 KO:K12823
Uniprot:Q59LU0
Length = 562
Score = 1023 (365.2 bits), Expect = 2.9e-103, P = 2.9e-103
Identities = 205/420 (48%), Positives = 285/420 (67%)
Query: 185 FNKDFYQDSASISGMSEQDVMEYKKSLAIRVSGFDVPRPVKTFEDCGFSTQLMHAISKQG 244
F K+FY + ++ S++D+ +++K + V G D+P P+ TF++ GF ++ + QG
Sbjct: 87 FEKNFYSEHPDVAARSDRDIEQFRKENEMTVKGHDIPHPITTFDEAGFPDYVLQEVKDQG 146
Query: 245 YEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVIC 304
+ KPT IQCQ P+ LSGRD+IGIA TGSGKT ++ LP IVHI QP+LQ +GPI ++
Sbjct: 147 FPKPTPIQCQGWPMALSGRDMIGIAATGSGKTLSYCLPSIVHINAQPQLQYGDGPIVLVL 206
Query: 305 APTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLK 364
APTRELA QI E KF KS IR + VYGG K Q ++L G EI IATPGRLIDML+
Sbjct: 207 APTRELAVQIQTECSKFGKSSRIRNTCVYGGAPKGPQIRDLARGVEICIATPGRLIDMLE 266
Query: 365 MKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLAREI 424
+ RVTYLVLDEADRM D+GFEPQIR IV QIRPDRQTL++SAT P++V++L R+
Sbjct: 267 AGKTNLKRVTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVQQLTRDY 326
Query: 425 LSDPVRVTVGEVGMA-NEDITQVVHVIPSDAEKLPWLLEKLPGMIDDGD--VLVFASKKT 481
L+DP++VT+G + +A + ITQ+V VI + K L++ L +++ D +LVFAS K
Sbjct: 327 LNDPIQVTIGSLELAASHTITQLVEVI-DEFSKRDRLVKHLESALNEKDNKILVFASTKR 385
Query: 482 TVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKS 541
T DEI + L G+ A A+HGDK+Q R +L +F+ G +++ATDVAARG+D+K I
Sbjct: 386 TCDEITTYLRSDGWPALAIHGDKEQNERDWVLDEFRKGKTSIMVATDVAARGIDVKGITH 445
Query: 542 VVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELVNSLIAAGQNVSMEL 601
V+N+D+ +++ +VHRIGRTGR G GTA + T+ ++ G+L + A Q V EL
Sbjct: 446 VINYDMPGNIEDYVHRIGRTGRGG-ASGTAISFFTEGNSKLGGDLCKIMREANQTVPPEL 504
>FB|FBgn0035720 [details] [associations]
symbol:CG10077 species:7227 "Drosophila melanogaster"
[GO:0003724 "RNA helicase activity" evidence=ISS] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005875 "microtubule associated complex"
evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005875
EMBL:AE014296 GO:GO:0006200 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 GO:GO:0003724
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0016779 KO:K12823
GeneTree:ENSGT00660000095174 HSSP:P10081 UniGene:Dm.7301
GeneID:38756 KEGG:dme:Dmel_CG10077 FlyBase:FBgn0035720
ChiTaRS:CG10077 GenomeRNAi:38756 NextBio:810234 EMBL:AY102660
RefSeq:NP_648062.2 SMR:Q8MZI3 IntAct:Q8MZI3 MINT:MINT-863686
STRING:Q8MZI3 EnsemblMetazoa:FBtr0076940 EnsemblMetazoa:FBtr0333083
UCSC:CG10077-RA InParanoid:Q8MZI3 OMA:WRACAIH Uniprot:Q8MZI3
Length = 818
Score = 978 (349.3 bits), Expect = 4.1e-102, Sum P(2) = 4.1e-102
Identities = 197/441 (44%), Positives = 291/441 (65%)
Query: 172 IPALDHSLIDYEPFNKDFYQDSASISGMSEQDVMEYKKSLAIRVSGFDVPRPVKTFEDCG 231
+P + S ++ PF K+FY+ S+ + + + S I + G VP P FE+ G
Sbjct: 104 LPKIVWSEVNLTPFRKNFYKPCDSVLARTVGETETFLTSNEITIKGDQVPTPSIEFEEGG 163
Query: 232 FSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQP 291
F +M+ I KQG+ KPT+IQ Q PI +SGRD++G+A+TGSGKT A+VLP +VHI +QP
Sbjct: 164 FPDYVMNEIRKQGFAKPTAIQAQGWPIAMSGRDLVGVAQTGSGKTLAYVLPAVVHINNQP 223
Query: 292 ELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEI 351
L++ +GPI ++ APTRELA QI +F + +R + ++GG K Q ++L+ G EI
Sbjct: 224 RLERGDGPIALVLAPTRELAQQIQQVAIEFGSNTHVRNTCIFGGAPKGQQARDLERGVEI 283
Query: 352 VIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSA 411
VIATPGRLID L+ ++ R TYLVLDEADRM D+GFEPQIR I+ QIRPDRQ L++SA
Sbjct: 284 VIATPGRLIDFLERGTTSLKRCTYLVLDEADRMLDMGFEPQIRKIMQQIRPDRQVLMWSA 343
Query: 412 TMPRKVEKLAREILSDPVRVTVGEVGM-ANEDITQVVHVIPSDAEKLPWLLEKLPGMIDD 470
T P++V +LA E L++ ++V +G + + AN +I Q+V V + EKL L++ L + +
Sbjct: 344 TWPKEVRQLAEEFLNNYIQVNIGSLSLSANHNILQIVDVCDEN-EKLMKLIKLLTDISAE 402
Query: 471 GDV--LVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATD 528
+ ++F K VDEI ++++G++A A+HGDK Q R +L F++G + +L+ATD
Sbjct: 403 NETKTIIFVETKKRVDEITRNISRQGWRACAIHGDKSQQERDFVLSSFRNGRHSILVATD 462
Query: 529 VAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELVN 588
VAARGLD+ +K V+N+D + + +VHRIGRTGR+ + GTAYTL T A A +L+
Sbjct: 463 VAARGLDVDDVKFVINYDYPSNSEDYVHRIGRTGRSNNT-GTAYTLFTHSNANKANDLIQ 521
Query: 589 SLIAAGQNVSMELMDLAMKDG 609
L A Q ++ +LM++AM G
Sbjct: 522 VLREANQTINPKLMNMAMNGG 542
Score = 54 (24.1 bits), Expect = 4.1e-102, Sum P(2) = 4.1e-102
Identities = 14/48 (29%), Positives = 21/48 (43%)
Query: 691 GFNNSASAYANKRPALRGFVSGGSIGGDVNGTQTTGLTGFVSGGSIGG 738
G + Y + P + G +GG+ + NG T +GGS GG
Sbjct: 552 GGYRGGNGYQGRNPQMGGGYNGGNNYRNNNGPGATMNRNSFNGGSAGG 599
>POMBASE|SPBP8B7.16c [details] [associations]
symbol:dbp2 "ATP-dependent RNA helicase Dbp2"
species:4896 "Schizosaccharomyces pombe" [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISO] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0005524 "ATP binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISO;IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0005829 "cytosol" evidence=IDA]
[GO:0006364 "rRNA processing" evidence=ISO] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 PomBase:SPBP8B7.16c
GO:GO:0005829 GO:GO:0005524 GO:GO:0005730 GO:GO:0000184
EMBL:CU329671 GenomeReviews:CU329671_GR GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268804 KO:K12823 OMA:IDAMSGY OrthoDB:EOG47SWP6
EMBL:X52648 EMBL:L11574 PIR:T40810 RefSeq:NP_596523.1
ProteinModelPortal:P24782 IntAct:P24782 STRING:P24782 PRIDE:P24782
EnsemblFungi:SPBP8B7.16c.1 GeneID:2541383 KEGG:spo:SPBP8B7.16c
NextBio:20802492 Uniprot:P24782
Length = 550
Score = 1003 (358.1 bits), Expect = 3.8e-101, P = 3.8e-101
Identities = 208/425 (48%), Positives = 288/425 (67%)
Query: 184 PFNKDFYQDSASISGMSEQDVMEYKKSLAIRVSGFDVPRPVKTFEDCGFSTQLMHAISKQ 243
PF KDFY++ ++ S+ +V EY+K I V G +VP+PV TFE+ GF ++ + +
Sbjct: 81 PFQKDFYKEHENVRNRSDAEVTEYRKEKEIVVHGLNVPKPVTTFEEAGFPNYVLKEVKQL 140
Query: 244 GYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVI 303
G+E PT IQ QA P+ +SGRD++GI+ TGSGKT ++ LP IVHI QP L +GPI ++
Sbjct: 141 GFEAPTPIQQQAWPMAMSGRDMVGISATGSGKTLSYCLPAIVHINAQPLLSPGDGPIVLV 200
Query: 304 CAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDML 363
APTRELA QI E KF KS IR + VYGG+ + Q ++L G EI IATPGRL+DML
Sbjct: 201 LAPTRELAVQIQQECTKFGKSSRIRNTCVYGGVPRGPQIRDLIRGVEICIATPGRLLDML 260
Query: 364 KMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLARE 423
+ RVTYLVLDEADRM D+GFEPQIR IV QIRPDRQT++FSAT P++V++LAR+
Sbjct: 261 DSNKTNLRRVTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTVMFSATWPKEVQRLARD 320
Query: 424 ILSDPVRVTVGEVGMA-NEDITQVVHVIPSDAEKLPWLLEKLPGMIDDGD--VLVFASKK 480
L+D ++VTVG + +A + +I Q+V V+ +A+K L + + ++ D D VL+F K
Sbjct: 321 YLNDYIQVTVGSLDLAASHNIKQIVEVV-DNADKRARLGKDIEEVLKDRDNKVLIFTGTK 379
Query: 481 TTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIK 540
D+I L Q G+ A A+HGDK Q R +L +F++G +++ATDVA+RG+D+K I
Sbjct: 380 RVADDITRFLRQDGWPALAIHGDKAQDERDWVLNEFRTGKSPIMVATDVASRGIDVKGIT 439
Query: 541 SVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELVNSLIAAGQNVSME 600
V N+D + + +VHRIGRTGRAG K GTAYT T A+ A ELV+ L A Q++ +
Sbjct: 440 HVFNYDFPGNTEDYVHRIGRTGRAGAK-GTAYTYFTSDNAKQARELVSILSEAKQDIDPK 498
Query: 601 LMDLA 605
L ++A
Sbjct: 499 LEEMA 503
>ASPGD|ASPL0000006660 [details] [associations]
symbol:AN5931 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0000184 GO:GO:0003723 EMBL:BN001301
EMBL:AACD01000101 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268804 KO:K12823 RefSeq:XP_663535.1
ProteinModelPortal:Q5B0J9 STRING:Q5B0J9 PRIDE:Q5B0J9
EnsemblFungi:CADANIAT00007099 GeneID:2870997 KEGG:ani:AN5931.2
OMA:IDAMSGY OrthoDB:EOG47SWP6 Uniprot:Q5B0J9
Length = 563
Score = 994 (355.0 bits), Expect = 3.4e-100, P = 3.4e-100
Identities = 207/434 (47%), Positives = 289/434 (66%)
Query: 180 IDYEP-FNKDFYQDSASISGMSEQDVMEYKKSLAIRVSGFDVPRPVKTFEDCGFSTQLMH 238
+D P F K FY++ ++ S+++V E++K + V G DVPRPV+TF++ GF ++
Sbjct: 94 LDTLPKFEKSFYKEHPDVTARSQREVDEFRKKCEMTVQGRDVPRPVETFDEAGFPQYVLS 153
Query: 239 AISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEG 298
+ QG+EKPT+IQ Q P+ LSGRD++GIA+TGSGKT ++ LP IVHI QP L +G
Sbjct: 154 EVKAQGFEKPTAIQSQGWPMALSGRDVVGIAETGSGKTLSYCLPAIVHINAQPLLAPGDG 213
Query: 299 PIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGR 358
PI +I APTRELA QI E KF KS IR + VYGG+ K Q ++L G E+ IATPGR
Sbjct: 214 PIVLILAPTRELAVQIQAEISKFGKSSRIRNTCVYGGVPKGPQIRDLSRGVEVCIATPGR 273
Query: 359 LIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMPRKVE 418
LIDML+ + RVTYLVLDEADRM D+GFEPQIR I+ QIRPDRQT ++SAT P++V
Sbjct: 274 LIDMLEAGRTNLRRVTYLVLDEADRMLDMGFEPQIRKIISQIRPDRQTCMWSATWPKEVR 333
Query: 419 KLAREILSDPVRVTVGEVGM-ANEDITQVVHVIPSDAEKLPWLLEKLPGMIDD-GD-VLV 475
+LA + L++ ++V +G + + AN ITQ+V VI S+ EK +++ L ++++ G+ LV
Sbjct: 334 QLASDFLNNYIQVNIGSMDLSANHRITQIVEVI-SEFEKRDRMIKHLEKIMENRGNKCLV 392
Query: 476 FASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLD 535
F K DEI L Q G+ A ++HGDK Q R +L +FK+G +++ATDVA+RG+D
Sbjct: 393 FTGTKRIADEITRFLRQDGWPALSIHGDKQQQERDWVLNEFKTGKSPIMVATDVASRGID 452
Query: 536 IKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELVNSLIAAGQ 595
++ I V+N+D + + +VHRIGRTGRAG K GTA T T A+ A +LV L A Q
Sbjct: 453 VRDITHVINYDYPNNSEDYVHRIGRTGRAGAK-GTAITFFTTDNAKQARDLVTILSEAKQ 511
Query: 596 NVSMELMDLAMKDG 609
+ L ++ G
Sbjct: 512 QIDPRLAEMVRYSG 525
>DICTYBASE|DDB_G0293168 [details] [associations]
symbol:ddx17 "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0008186 "RNA-dependent ATPase
activity" evidence=ISS] [GO:0006396 "RNA processing" evidence=ISS]
[GO:0005634 "nucleus" evidence=IEA;ISS] [GO:0003724 "RNA helicase
activity" evidence=ISS] [GO:0003723 "RNA binding" evidence=IEA;ISS]
[GO:0042254 "ribosome biogenesis" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0006364 "rRNA processing"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0044351 "macropinocytosis" evidence=RCA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
dictyBase:DDB_G0293168 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737
GenomeReviews:CM000155_GR GO:GO:0000184 GO:GO:0003723 GO:GO:0006396
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0008026 eggNOG:COG0513 GO:GO:0003724 InterPro:IPR014014
PROSITE:PS51195 EMBL:AAFI02000199 KO:K12823 GO:GO:0008186
RefSeq:XP_629279.1 HSSP:P09052 ProteinModelPortal:Q54CE0
PRIDE:Q54CE0 EnsemblProtists:DDB0233431 GeneID:8629001
KEGG:ddi:DDB_G0293168 Uniprot:Q54CE0
Length = 785
Score = 991 (353.9 bits), Expect = 7.1e-100, P = 7.1e-100
Identities = 206/423 (48%), Positives = 281/423 (66%)
Query: 185 FNKDFYQDSASISGMSEQDVMEYKKSLAIRVSGFDVPRPVKTFEDCGFSTQLMHAISKQG 244
F K+FY + +S +++++ +++ S + V G +VP P+ F F LM I G
Sbjct: 344 FEKNFYLEHPDVSKFTQEEIEKFRASFQMTVKGREVPPPIMQFTQAPFPGYLMKEIIGAG 403
Query: 245 YEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVIC 304
+ PT IQ QA PI L GRDIIG+AKTGSGKT AF+LP IVHI QP L++++GPI ++
Sbjct: 404 FPNPTPIQSQAWPIALKGRDIIGLAKTGSGKTLAFLLPSIVHINAQPVLREDDGPIVLVL 463
Query: 305 APTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLK 364
APTRELA QI ET KF + I + VYGG SK Q LK G EIVIATPGRLID+L+
Sbjct: 464 APTRELALQIQEETNKFGGTSQISNTCVYGGASKHTQVAALKKGVEIVIATPGRLIDILE 523
Query: 365 MKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLAREI 424
+ RVTYLVLDEADRM D+GFEPQIR I+ QIRPDRQTL+FSAT P++V+ LA +
Sbjct: 524 SGKTNLRRVTYLVLDEADRMLDMGFEPQIRKIISQIRPDRQTLMFSATWPKEVQALAHDF 583
Query: 425 LSDPVRVTVGEVGM-ANEDITQVVHVIPSDAEKLPWLLEKLPGMIDDGDVLVFASKKTTV 483
L+D ++V +G + AN ++ Q+V V D EK +L L + D V+VFA + V
Sbjct: 584 LTDHIQVHIGSTEITANHNVRQIVEVC-QDFEKKERMLSFLGSVGRDEKVIVFAETRKGV 642
Query: 484 DEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVV 543
D+++ L GFK+ +HG+K Q R +L +FK+G+ ++IATDVA+RGLDIK IK VV
Sbjct: 643 DDLQRVLQFSGFKSIGIHGNKSQPERDFVLSQFKNGMVPIMIATDVASRGLDIKDIKYVV 702
Query: 544 NFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELVNSLIAAGQNVSMELMD 603
N+D +++++HRIGRT RAG G +Y+L+T AR A EL+ L A Q + +EL +
Sbjct: 703 NYDFPNTIEVYIHRIGRTARAG-ASGVSYSLLTTDNARLANELIKVLTEAKQKIPIELSN 761
Query: 604 LAM 606
L++
Sbjct: 762 LSV 764
>UNIPROTKB|A4QSS5 [details] [associations]
symbol:DBP2 "ATP-dependent RNA helicase DBP2"
species:242507 "Magnaporthe oryzae 70-15" [GO:0043581 "mycelium
development" evidence=IEP] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0000184 EMBL:CM001233 GO:GO:0003723
GO:GO:0043581 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 OrthoDB:EOG47SWP6 RefSeq:XP_003712846.1
ProteinModelPortal:A4QSS5 EnsemblFungi:MGG_16901T0 GeneID:12985738
KEGG:mgr:MGG_16901 Uniprot:A4QSS5
Length = 548
Score = 982 (350.7 bits), Expect = 6.4e-99, P = 6.4e-99
Identities = 199/430 (46%), Positives = 285/430 (66%)
Query: 185 FNKDFYQDSASISGMSEQDVMEYKKSLAIRVSGFDVPRPVKTFEDCGFSTQLMHAISKQG 244
F K FY++ ++ S+ +V ++++ ++ V G DVP+PV+TF++ GF +M + QG
Sbjct: 85 FEKHFYKEHPDVTNRSQAEVDKFRREHSMAVQGSDVPKPVETFDEAGFPRYVMDEVKAQG 144
Query: 245 YEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVIC 304
+ PT+IQ Q P+ LSGRD++GIA+TGSGKT + LP IVHI QP L +GPI +I
Sbjct: 145 FPAPTAIQSQGWPMALSGRDVVGIAETGSGKTLTYCLPAIVHINAQPLLAPGDGPIVLIL 204
Query: 305 APTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLK 364
APTRELA QI E KF KS IR + VYGG+ K Q ++L G E+ IATPGRLIDML+
Sbjct: 205 APTRELAVQIQAEISKFGKSSRIRNTCVYGGVPKGPQIRDLSRGVEVCIATPGRLIDMLE 264
Query: 365 MKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLAREI 424
+ RVTYLVLDEADRM D+GFEPQIR I+GQIRPDRQTL++SAT P++V +A +
Sbjct: 265 SGKTNLRRVTYLVLDEADRMLDMGFEPQIRKIIGQIRPDRQTLMWSATWPKEVRNMAADF 324
Query: 425 LSDPVRVTVGEVGM-ANEDITQVVHVIPSDAEKLPWLLEKLPGMIDDGD----VLVFASK 479
L D ++V +G + + AN ITQ+V V+ S++EK ++ + ++D D +L+F
Sbjct: 325 LQDFIQVNIGSLDLSANHRITQIVEVV-SESEKRDRMIRHMEKVMDGKDSKNKILIFVGT 383
Query: 480 KTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSI 539
K DEI L Q G+ A ++HGDK Q R +L +FK+G +++ATDVA+RG+D+++I
Sbjct: 384 KRVADEITRFLRQDGWPALSIHGDKQQNERDWVLDQFKTGKSPIMVATDVASRGIDVRNI 443
Query: 540 KSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELVNSLIAAGQNVSM 599
V+N+D + + ++HRIGRTGRAG K GTA T T + ++ A +L+ L A Q +
Sbjct: 444 THVLNYDYPNNSEDYIHRIGRTGRAGAK-GTAITFFTTENSKQARDLLGVLQEAKQEIDP 502
Query: 600 ELMDLAMKDG 609
L ++A G
Sbjct: 503 RLAEMARYGG 512
>FB|FBgn0003261 [details] [associations]
symbol:Rm62 "Rm62" species:7227 "Drosophila melanogaster"
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS;NAS]
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0005515 "protein
binding" evidence=IPI] [GO:0016246 "RNA interference" evidence=IMP]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0000381 "regulation of alternative mRNA
splicing, via spliceosome" evidence=IMP] [GO:0005634 "nucleus"
evidence=IC;IDA] [GO:0019730 "antimicrobial humoral response"
evidence=IMP] [GO:0005703 "polytene chromosome puff" evidence=IDA]
[GO:0005875 "microtubule associated complex" evidence=IDA]
[GO:0071011 "precatalytic spliceosome" evidence=IDA] [GO:0071013
"catalytic step 2 spliceosome" evidence=IDA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IC] [GO:0005700 "polytene
chromosome" evidence=IDA] [GO:0022008 "neurogenesis" evidence=IMP]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 EMBL:AE014297 GO:GO:0005524 GO:GO:0005875
GO:GO:0006417 GO:GO:0016246 GO:GO:0022008 GO:GO:0003729
GO:GO:0019730 GO:GO:0071011 GO:GO:0000398 GO:GO:0071013
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GO:GO:0005703 GO:GO:0000381 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K12823 GeneTree:ENSGT00660000095174 EMBL:X52846
EMBL:BT001716 EMBL:BT011476 EMBL:BT015209 PIR:S11485
RefSeq:NP_001163528.1 RefSeq:NP_001189182.1 RefSeq:NP_524243.2
RefSeq:NP_731031.1 RefSeq:NP_731032.1 RefSeq:NP_731033.1
RefSeq:NP_731034.1 RefSeq:NP_731035.2 UniGene:Dm.1520
ProteinModelPortal:P19109 SMR:P19109 DIP:DIP-17867N IntAct:P19109
MINT:MINT-301207 STRING:P19109 PaxDb:P19109 PRIDE:P19109
EnsemblMetazoa:FBtr0078652 GeneID:40739 KEGG:dme:Dmel_CG10279
CTD:40739 FlyBase:FBgn0003261 InParanoid:P19109 OMA:HISNQPR
OrthoDB:EOG4QBZMP PhylomeDB:P19109 GenomeRNAi:40739 NextBio:820339
Bgee:P19109 GermOnline:CG10279 Uniprot:P19109
Length = 719
Score = 952 (340.2 bits), Expect = 2.0e-98, Sum P(2) = 2.0e-98
Identities = 198/445 (44%), Positives = 287/445 (64%)
Query: 171 PIPALDHSLIDYEPFNKDFYQDSASISGMSEQDVMEYKKSLAIRVSGFDVPRPVKTFEDC 230
P+ +D S + PF K+FYQ+ +++ S +V Y++ I V G VP P++ F +
Sbjct: 230 PMRPVDFS--NLAPFKKNFYQEHPNVANRSPYEVQRYREEQEITVRG-QVPNPIQDFSEV 286
Query: 231 GFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQ 290
+M I +QGY+ PT+IQ Q PI +SG + +GIAKTGSGKT ++LP IVHI +Q
Sbjct: 287 HLPDYVMKEIRRQGYKAPTAIQAQGWPIAMSGSNFVGIAKTGSGKTLGYILPAIVHINNQ 346
Query: 291 PELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCE 350
LQ+ +GPI ++ APTRELA QI +F S +R + V+GG K Q ++L+ GCE
Sbjct: 347 QPLQRGDGPIALVLAPTRELAQQIQQVATEFGSSSYVRNTCVFGGAPKGGQMRDLQRGCE 406
Query: 351 IVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFS 410
IVIATPGRLID L + + R TYLVLDEADRM D+GFEPQIR IV QIRPDRQTL++S
Sbjct: 407 IVIATPGRLIDFLSAGSTNLKRCTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQTLMWS 466
Query: 411 ATMPRKVEKLAREILSDPVRVTVGEVGM-ANEDITQVVHVIP--SDAEKLPWLLEKLPGM 467
AT P++V++LA + L + +++ +G + + AN +I QVV V S EKL LL +
Sbjct: 467 ATWPKEVKQLAEDFLGNYIQINIGSLELSANHNIRQVVDVCDEFSKEEKLKTLLSDIYDT 526
Query: 468 IDD-GDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIA 526
+ G +++F K VD + + G + A+HGDK Q+ R +L++F+SG ++L+A
Sbjct: 527 SESPGKIIIFVETKRRVDNLVRFIRSFGVRCGAIHGDKSQSERDFVLREFRSGKSNILVA 586
Query: 527 TDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGEL 586
TDVAARGLD+ IK V+NFD ++ + ++HRIGRTGR+ K GT++ T+ A+ A L
Sbjct: 587 TDVAARGLDVDGIKYVINFDYPQNSEDYIHRIGRTGRSNTK-GTSFAFFTKNNAKQAKAL 645
Query: 587 VNSLIAAGQNVSMELMDLAMKDGRF 611
V+ L A Q ++ L +LA ++ R+
Sbjct: 646 VDVLREANQEINPALENLA-RNSRY 669
Score = 45 (20.9 bits), Expect = 2.0e-98, Sum P(2) = 2.0e-98
Identities = 13/30 (43%), Positives = 15/30 (50%)
Query: 712 GGSIGGD--VNGTQTTGLTGFVSGGSIGGE 739
GG GG G+ + G GF GG GGE
Sbjct: 684 GGRFGGGGFKKGSLSNG-RGFGGGGGGGGE 712
>FB|FBgn0029979 [details] [associations]
symbol:CG10777 species:7227 "Drosophila melanogaster"
[GO:0003724 "RNA helicase activity" evidence=ISS] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:AE014298
GO:GO:0006200 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 GO:GO:0003724
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0016779
GeneTree:ENSGT00660000095174 HSSP:P10081 EMBL:AY060404
RefSeq:NP_572424.1 UniGene:Dm.101 SMR:Q9W3M7 DIP:DIP-18838N
MINT:MINT-850836 EnsemblMetazoa:FBtr0071132 GeneID:31707
KEGG:dme:Dmel_CG10777 UCSC:CG10777-RB FlyBase:FBgn0029979
InParanoid:Q9W3M7 OMA:FLENRNT OrthoDB:EOG4B8GV9 GenomeRNAi:31707
NextBio:774939 Uniprot:Q9W3M7
Length = 945
Score = 948 (338.8 bits), Expect = 2.6e-98, Sum P(2) = 2.6e-98
Identities = 205/481 (42%), Positives = 302/481 (62%)
Query: 134 GYDSDEEVYAAAKAVDAGMLDYDSDDNPVVVEKKKIEPIPALDHSLIDYEPFNKDFYQDS 193
GY S+ Y AA GML + + + EK K + + EPF KDFY
Sbjct: 152 GYQSNN--YNAAAL---GMLSKE-ERAEIQREKAKNPGRNLVKPKWENLEPFLKDFYNIH 205
Query: 194 ASISGMSEQDVMEYKKSLAIRVSGFDVPRPVKTFEDCGFSTQLMHAISKQGYEKPTSIQC 253
+ SEQ V E ++ L I VSG ++P PV +FE+ ++ + +QG+ KPT+IQ
Sbjct: 206 PNTLAKSEQQVAEIRRELEITVSGNELPHPVVSFEESSLPAHVIEEMKRQGFTKPTAIQS 265
Query: 254 QALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQ 313
Q PI LSGRD++GIA+TGSGKT A++LP IVHI +QP + + EGPI ++ APTRELA Q
Sbjct: 266 QGWPIALSGRDLVGIAQTGSGKTLAYMLPAIVHIGNQPPIIRGEGPIALVLAPTRELAQQ 325
Query: 314 IYLETKKFAK--SHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMS 371
I + + IR + ++GG SK+ Q ++L G E++IATPGRLID L+ + +
Sbjct: 326 IQSVVRDYGHLCKPEIRHTCIFGGSSKVPQARDLDRGVEVIIATPGRLIDFLENRNTNLQ 385
Query: 372 RVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRV 431
R TYLVLDEADRM D+GFEPQIR I+ QIRPDRQ +++SAT P++V+ LA + L+D +++
Sbjct: 386 RCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQVVMWSATWPKEVQALAGDFLNDYIQI 445
Query: 432 TVGEVGM-ANEDITQVVHVIPS--DAEKLPWLLEKLPGMIDDGD----VLVFASKKTTVD 484
+G + + AN +I Q+V + ++L LL ++ + + G+ ++VF K V+
Sbjct: 446 NIGSMNLSANHNIRQIVEICTEIEKPQRLVCLLNEISPIKNSGNNGNKIIVFVETKIKVE 505
Query: 485 EIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVN 544
+I + +G+ A ++HGDK Q R +L+ F++G ++LIATDVA+RGLD++ ++ V+N
Sbjct: 506 DILQIIRAEGYNATSIHGDKTQNERDSVLKDFRNGKSNILIATDVASRGLDVEDLQYVIN 565
Query: 545 FDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELVNSLIAAGQNVSMELMDL 604
+D + +VHRIGRTGR + GTAYT T A+ A EL++ L AGQ S L+DL
Sbjct: 566 YDYPNSSENYVHRIGRTGRC-QQLGTAYTFFTPDNAKQARELISVLEEAGQTPSQALLDL 624
Query: 605 A 605
A
Sbjct: 625 A 625
Score = 48 (22.0 bits), Expect = 2.6e-98, Sum P(2) = 2.6e-98
Identities = 10/21 (47%), Positives = 12/21 (57%)
Query: 53 YEDNDAAKAANDTGNGAEKEE 73
Y N AA A +GNGA + E
Sbjct: 21 YYGNGAAAGAGGSGNGAPRHE 41
>ZFIN|ZDB-GENE-030131-18 [details] [associations]
symbol:si:dkey-156n14.5 "si:dkey-156n14.5"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 ZFIN:ZDB-GENE-030131-18 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00660000095174
KO:K13178 EMBL:CR626864 IPI:IPI00896916 RefSeq:XP_001923830.1
UniGene:Dr.75535 Ensembl:ENSDART00000129202 GeneID:556764
KEGG:dre:556764 NextBio:20881652 ArrayExpress:F1QBS1 Bgee:F1QBS1
Uniprot:F1QBS1
Length = 671
Score = 936 (334.5 bits), Expect = 4.8e-94, P = 4.8e-94
Identities = 221/572 (38%), Positives = 319/572 (55%)
Query: 180 IDYEP-FNKDFYQDSASISGMSEQDVMEYKKSLAIRVSGFDVPRPVKTFEDCGFSTQLMH 238
+D P F K+FY ++ + MS+ DV EY++ I V G P+PV F F +M
Sbjct: 49 LDQLPKFEKNFYNENPEVHHMSQYDVEEYRRKREITVRGSGCPKPVTNFHQAQFPQYVMD 108
Query: 239 AISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEG 298
+ +Q +++PT+IQ Q P+ LSGRD++GIA+TGSGKT A++LP IVHI QP L++ +G
Sbjct: 109 VLLQQNFKEPTAIQAQGFPLALSGRDMVGIAQTGSGKTLAYLLPAIVHINHQPYLERGDG 168
Query: 299 PIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGR 358
PI ++ APTRELA Q+ + KS I+ + VYGG K Q ++L+ G EI IATPGR
Sbjct: 169 PICLVLAPTRELAQQVQQVAFDYGKSSRIKSTCVYGGAPKGPQIRDLERGVEICIATPGR 228
Query: 359 LIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMPRKVE 418
LID L++ + R TYLVLDEADRM D+GFEPQIR IV QIRPDRQTL++SAT P++V
Sbjct: 229 LIDFLEVGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVR 288
Query: 419 KLAREILSDPVRVTVGEVGM-ANEDITQVVHVIPSDAE--KLPWLLEKLPGMIDDGDVLV 475
+LA + L D V++ +G + + AN +I Q+V V + + KL L+E++ + ++
Sbjct: 289 QLAEDFLQDYVQINIGALELSANHNILQIVDVCMENEKDNKLIQLMEEIMAE-KENKTII 347
Query: 476 FASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLD 535
F K DE+ ++ + G+ A +HGDK Q R +L +F+SG +LIATDVA+RGLD
Sbjct: 348 FVETKKRCDELTRRMRRDGWPAMCIHGDKSQPERDWVLTEFRSGKAPILIATDVASRGLD 407
Query: 536 IKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELVNSLIAAGQ 595
++ +K V+N+D + +VHRIGRT R+ +K GTAYT T R A +LV L A Q
Sbjct: 408 VEDVKFVINYDYPNSSEDYVHRIGRTARSTNK-GTAYTFFTPGNLRQARDLVRVLEEARQ 466
Query: 596 NVSMELMDLAMKD-----GRFRSXXXXXXXXXXXXXXXXXXXXXXXXXXFGLGIGYTPES 650
++ +L+ L GR R G+ G +
Sbjct: 467 AINPKLLQLVDTGRGGGGGRMRYRGNNSSSNNPNLMYQDECDRRMRSGT-GVNKGGRSSN 525
Query: 651 NNTSSQSVPSRSAAVNSLKTGMMTQFRSNFVAASSNTPSEGFNNSASAYANKRPALRGFV 710
NN ++ S RS N + M + +R +N NS +Y N
Sbjct: 526 NNNNNFSRDGRSGGSNRDER-MSSSYRDRSRDGRNNY------NSGPSYNNGGGEQFQSY 578
Query: 711 SGGSIGGDVNGTQTTGLTGFVSGGSIGGEMSG 742
GG GG+ G++ G GG+ G + G
Sbjct: 579 GGGGGGGEQYGSR--GAPSHPGGGAGGQDQPG 608
>ZFIN|ZDB-GENE-030131-925 [details] [associations]
symbol:ddx5 "DEAD (Asp-Glu-Ala-Asp) box polypeptide
5" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 ZFIN:ZDB-GENE-030131-925 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00660000095174
EMBL:BX085195 IPI:IPI00488168 Ensembl:ENSDART00000055492
ArrayExpress:F1Q5L6 Bgee:F1Q5L6 Uniprot:F1Q5L6
Length = 617
Score = 932 (333.1 bits), Expect = 1.3e-93, P = 1.3e-93
Identities = 193/441 (43%), Positives = 285/441 (64%)
Query: 177 HSLIDYEP-FNKDFYQDSASISGMSEQDVMEYKKSLAIRVSGFDVPRPVKTFEDCGFSTQ 235
H +D P F K+FYQ++ ++ S Q+V Y++S I V G D P+P+ F + F
Sbjct: 47 HWNLDELPKFEKNFYQENPDVARRSAQEVEHYRRSKEITVKGRDGPKPIVKFHEANFPKY 106
Query: 236 LMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQK 295
+M I+KQ + PT IQ Q P+ LSG+D++GIA+TGSGKT +++LP IVHI QP L+
Sbjct: 107 VMDVITKQNWTDPTPIQAQGWPVALSGKDMVGIAQTGSGKTLSYLLPAIVHINHQPFLEH 166
Query: 296 EEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIAT 355
+GPI ++ APTRELA Q+ ++ K+ I+ + +YGG K Q ++L+ G EI IAT
Sbjct: 167 GDGPICLVLAPTRELAQQVQQVAAEYGKASRIKSTCIYGGAPKGPQIRDLERGVEICIAT 226
Query: 356 PGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMPR 415
PGRLID L+ + R TYLVLDEADRM D+GFEPQIR IV QIRPDRQTL++SAT P+
Sbjct: 227 PGRLIDFLEAGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPK 286
Query: 416 KVEKLAREILSDPVRVTVGEVGM-ANEDITQVVHVIPSDAEKLPWLLEKLPGMIDDGD-- 472
+V +LA + L + +++ VG + + AN +I Q+V V +D EK L+ L ++ + +
Sbjct: 287 EVRQLAEDFLKEYIQINVGALQLSANHNILQIVDVC-NDGEKEDKLIRLLEEIMSEKENK 345
Query: 473 VLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAAR 532
++F K D++ ++ + G+ A +HGDK+Q R +L +FK G +LIATDVA+R
Sbjct: 346 TIIFVETKRRCDDLTRRMRRDGWPAMGIHGDKNQQERDWVLNEFKYGKAPILIATDVASR 405
Query: 533 GLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELVNSLIA 592
GLD++ +K V+NFD + + ++HRIGRT R+ K GTAYT T + A +LV+ L
Sbjct: 406 GLDVEDVKFVINFDYPNNSEDYIHRIGRTARS-QKTGTAYTFFTPNNMKQAHDLVSVLRE 464
Query: 593 AGQNVSMELMDLAM-KDGRFR 612
A Q ++ +L+ +A + GR R
Sbjct: 465 ANQAINPKLIQMAEDRGGRSR 485
>CGD|CAL0005725 [details] [associations]
symbol:PRP5 species:5476 "Candida albicans" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] [GO:0008186 "RNA-dependent ATPase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 CGD:CAL0005725 GO:GO:0005524
GO:GO:0005634 GO:GO:0008380 GO:GO:0006397 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 EMBL:AACQ01000029
EMBL:AACQ01000028 KO:K12811 RefSeq:XP_719806.1 RefSeq:XP_719923.1
ProteinModelPortal:Q5ADL0 GeneID:3638447 GeneID:3638635
KEGG:cal:CaO19.14123 KEGG:cal:CaO19.6831 Uniprot:Q5ADL0
Length = 884
Score = 926 (331.0 bits), Expect = 5.5e-93, P = 5.5e-93
Identities = 204/462 (44%), Positives = 294/462 (63%)
Query: 166 KKKIEPIPALDHSLIDYEPFNKDFYQDSASISGMSEQDVMEYKKSLA-IRVSGFDVPRPV 224
+ K + + ++DHS +Y+ F K FY+++ +S +S++ V ++ L I+V G DVPRP+
Sbjct: 233 QNKGKELQSIDHSQENYQEFRKVFYREAYELSALSDEQVELIRQDLDNIKVKGTDVPRPI 292
Query: 225 KTFEDCGFSTQLMHAI-SKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPM 283
+ T L I K +EKP++IQ QALP ILSGRD+IGIAKTGSGKT ++VLPM
Sbjct: 293 LKWSHLALPTNLSSVIHDKLKFEKPSAIQSQALPTILSGRDVIGIAKTGSGKTLSYVLPM 352
Query: 284 IVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAK-SHGIRVSAVYGGMSKLDQF 342
+ HI DQ + +GPIG+I +PTRELA QI E F K ++ +RV YGG S +Q
Sbjct: 353 LRHIQDQQFSKDNQGPIGLILSPTRELALQIEKEILNFTKRNNNLRVCCCYGGSSIENQI 412
Query: 343 KELKAGCEIVIATPGRLIDMLKM---KALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQ 399
ELK G EI++ TPGR+ID+L + L + R T++VLDEADRMFDLGFEPQ+ I+ Q
Sbjct: 413 NELKKGVEIIVGTPGRVIDLLAANSGRVLNLKRCTFVVLDEADRMFDLGFEPQVNKILTQ 472
Query: 400 IRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPW 459
IRPDRQT+LFSAT PRK+E LA++IL+DPV + VG + + +I Q V + + AE+
Sbjct: 473 IRPDRQTVLFSATFPRKMETLAKQILTDPVVIIVGGISVVAPEIKQEVVLFETSAEEQDK 532
Query: 460 L----LEKLPGMID-------DGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQAS 508
+EKL ++ D +LVF K+ DE+ + L + A A+HG KDQ
Sbjct: 533 YKQQRVEKLHDILTNYQIEHPDSKILVFTEKQNDADELVANLLSNKYPAIAIHGGKDQMD 592
Query: 509 RMEILQKFKS---GVYHVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAG 565
R +++F S G+ ++LIAT +AARGLD++++ V+NFD M+ +VHR+GRTGRAG
Sbjct: 593 RKYAIKEFASMDSGI-NILIATSIAARGLDVRNLGLVINFDPPNHMEDYVHRVGRTGRAG 651
Query: 566 DKDGTAYTLVTQKEARFAGELVNSLIAAGQNVSMELMDLAMK 607
K G A T V+ + + LV +L + ++ +L ++A K
Sbjct: 652 AK-GNAITFVSSSQPKEVFNLVKALKLSHSDIDPKLEEIANK 692
>UNIPROTKB|Q5ADL0 [details] [associations]
symbol:PRP5 "Pre-mRNA-processing ATP-dependent RNA helicase
PRP5" species:237561 "Candida albicans SC5314" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 CGD:CAL0005725 GO:GO:0005524
GO:GO:0005634 GO:GO:0008380 GO:GO:0006397 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 EMBL:AACQ01000029
EMBL:AACQ01000028 KO:K12811 RefSeq:XP_719806.1 RefSeq:XP_719923.1
ProteinModelPortal:Q5ADL0 GeneID:3638447 GeneID:3638635
KEGG:cal:CaO19.14123 KEGG:cal:CaO19.6831 Uniprot:Q5ADL0
Length = 884
Score = 926 (331.0 bits), Expect = 5.5e-93, P = 5.5e-93
Identities = 204/462 (44%), Positives = 294/462 (63%)
Query: 166 KKKIEPIPALDHSLIDYEPFNKDFYQDSASISGMSEQDVMEYKKSLA-IRVSGFDVPRPV 224
+ K + + ++DHS +Y+ F K FY+++ +S +S++ V ++ L I+V G DVPRP+
Sbjct: 233 QNKGKELQSIDHSQENYQEFRKVFYREAYELSALSDEQVELIRQDLDNIKVKGTDVPRPI 292
Query: 225 KTFEDCGFSTQLMHAI-SKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPM 283
+ T L I K +EKP++IQ QALP ILSGRD+IGIAKTGSGKT ++VLPM
Sbjct: 293 LKWSHLALPTNLSSVIHDKLKFEKPSAIQSQALPTILSGRDVIGIAKTGSGKTLSYVLPM 352
Query: 284 IVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAK-SHGIRVSAVYGGMSKLDQF 342
+ HI DQ + +GPIG+I +PTRELA QI E F K ++ +RV YGG S +Q
Sbjct: 353 LRHIQDQQFSKDNQGPIGLILSPTRELALQIEKEILNFTKRNNNLRVCCCYGGSSIENQI 412
Query: 343 KELKAGCEIVIATPGRLIDMLKM---KALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQ 399
ELK G EI++ TPGR+ID+L + L + R T++VLDEADRMFDLGFEPQ+ I+ Q
Sbjct: 413 NELKKGVEIIVGTPGRVIDLLAANSGRVLNLKRCTFVVLDEADRMFDLGFEPQVNKILTQ 472
Query: 400 IRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPW 459
IRPDRQT+LFSAT PRK+E LA++IL+DPV + VG + + +I Q V + + AE+
Sbjct: 473 IRPDRQTVLFSATFPRKMETLAKQILTDPVVIIVGGISVVAPEIKQEVVLFETSAEEQDK 532
Query: 460 L----LEKLPGMID-------DGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQAS 508
+EKL ++ D +LVF K+ DE+ + L + A A+HG KDQ
Sbjct: 533 YKQQRVEKLHDILTNYQIEHPDSKILVFTEKQNDADELVANLLSNKYPAIAIHGGKDQMD 592
Query: 509 RMEILQKFKS---GVYHVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAG 565
R +++F S G+ ++LIAT +AARGLD++++ V+NFD M+ +VHR+GRTGRAG
Sbjct: 593 RKYAIKEFASMDSGI-NILIATSIAARGLDVRNLGLVINFDPPNHMEDYVHRVGRTGRAG 651
Query: 566 DKDGTAYTLVTQKEARFAGELVNSLIAAGQNVSMELMDLAMK 607
K G A T V+ + + LV +L + ++ +L ++A K
Sbjct: 652 AK-GNAITFVSSSQPKEVFNLVKALKLSHSDIDPKLEEIANK 692
>UNIPROTKB|E2RJ60 [details] [associations]
symbol:DDX17 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00660000095174 EMBL:AAEX03007314
Ensembl:ENSCAFT00000037931 Uniprot:E2RJ60
Length = 650
Score = 900 (321.9 bits), Expect = 1.0e-92, Sum P(2) = 1.0e-92
Identities = 188/430 (43%), Positives = 273/430 (63%)
Query: 179 LIDYEPFNKDFYQDSASISGMSEQDVMEYKKSLAIRVSGFDV-PRPVKTFEDCGFSTQLM 237
L + F K+FY + ++ ++ +V E ++ I V G DV P+PV F F +M
Sbjct: 45 LSELPKFEKNFYVEHPEVARLTPYEVDELRRKKEITVRGGDVCPKPVFAFHHANFPQYVM 104
Query: 238 HAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEE 297
+ Q + +PT IQCQ P+ LSGRD++GIA+TGSGKT A++LP IVHI QP L++ +
Sbjct: 105 DVLMDQHFTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAYLLPAIVHINHQPYLERGD 164
Query: 298 GPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPG 357
GPI ++ APTRELA Q+ + K ++ + +YGG K Q ++L+ G EI IATPG
Sbjct: 165 GPICLVLAPTRELAQQVQQVADDYGKCSRLKSTCIYGGAPKGPQIRDLERGVEICIATPG 224
Query: 358 RLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMPRKV 417
RLID L+ + R TYLVLDEADRM D+GFEPQIR IV QIRPDRQTL++SAT P++V
Sbjct: 225 RLIDFLESGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEV 284
Query: 418 EKLAREILSDPVRVTVGEVGM-ANEDITQVVHV-IPSDAE-KLPWLLEKLPGMIDDGDVL 474
+LA + L D ++ VG + + AN +I Q+V V + S+ + KL L+E++ + +
Sbjct: 285 RQLAEDFLRDYTQINVGNLELSANHNILQIVDVCMESEKDHKLIQLMEEIMAE-KENKTI 343
Query: 475 VFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGL 534
+F K D++ ++ + G+ A +HGDK Q R +L +F+SG +LIATDVA+RGL
Sbjct: 344 IFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPILIATDVASRGL 403
Query: 535 DIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELVNSLIAAG 594
D++ +K V+N+D + +VHRIGRT R+ +K GTAYT T + A EL+ L A
Sbjct: 404 DVEDVKFVINYDYPNSSEDYVHRIGRTARSTNK-GTAYTFFTPGNLKQARELIKVLEEAN 462
Query: 595 QNVSMELMDL 604
Q ++ +LM L
Sbjct: 463 QAINPKLMQL 472
Score = 43 (20.2 bits), Expect = 1.0e-92, Sum P(2) = 1.0e-92
Identities = 17/84 (20%), Positives = 24/84 (28%)
Query: 685 SNTPSEGFNNSASAYANKRPALRGFVSGGSIGGDVNGTQTTGLTGFVSGGSIGGEMSGTQ 744
S T G+ N S Y + A + G G G +G+ + G +
Sbjct: 527 SETDRAGYANG-SGYGSPNSAFGAQAGQYTYGQGTYGAAAYGTSGYTAQEYGAGTYGASS 585
Query: 745 TTXXXXXXXXXXXXRVNYGESAHQ 768
TT G S Q
Sbjct: 586 TTSTGRSSQSSSQQFSGIGRSGQQ 609
>UNIPROTKB|F1PID8 [details] [associations]
symbol:DDX17 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00660000095174 OMA:QQFPQPP EMBL:AAEX03007314
Ensembl:ENSCAFT00000002162 Uniprot:F1PID8
Length = 736
Score = 900 (321.9 bits), Expect = 1.0e-92, Sum P(2) = 1.0e-92
Identities = 188/430 (43%), Positives = 273/430 (63%)
Query: 179 LIDYEPFNKDFYQDSASISGMSEQDVMEYKKSLAIRVSGFDV-PRPVKTFEDCGFSTQLM 237
L + F K+FY + ++ ++ +V E ++ I V G DV P+PV F F +M
Sbjct: 126 LSELPKFEKNFYVEHPEVARLTPYEVDELRRKKEITVRGGDVCPKPVFAFHHANFPQYVM 185
Query: 238 HAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEE 297
+ Q + +PT IQCQ P+ LSGRD++GIA+TGSGKT A++LP IVHI QP L++ +
Sbjct: 186 DVLMDQHFTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAYLLPAIVHINHQPYLERGD 245
Query: 298 GPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPG 357
GPI ++ APTRELA Q+ + K ++ + +YGG K Q ++L+ G EI IATPG
Sbjct: 246 GPICLVLAPTRELAQQVQQVADDYGKCSRLKSTCIYGGAPKGPQIRDLERGVEICIATPG 305
Query: 358 RLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMPRKV 417
RLID L+ + R TYLVLDEADRM D+GFEPQIR IV QIRPDRQTL++SAT P++V
Sbjct: 306 RLIDFLESGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEV 365
Query: 418 EKLAREILSDPVRVTVGEVGM-ANEDITQVVHV-IPSDAE-KLPWLLEKLPGMIDDGDVL 474
+LA + L D ++ VG + + AN +I Q+V V + S+ + KL L+E++ + +
Sbjct: 366 RQLAEDFLRDYTQINVGNLELSANHNILQIVDVCMESEKDHKLIQLMEEIMAE-KENKTI 424
Query: 475 VFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGL 534
+F K D++ ++ + G+ A +HGDK Q R +L +F+SG +LIATDVA+RGL
Sbjct: 425 IFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPILIATDVASRGL 484
Query: 535 DIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELVNSLIAAG 594
D++ +K V+N+D + +VHRIGRT R+ +K GTAYT T + A EL+ L A
Sbjct: 485 DVEDVKFVINYDYPNSSEDYVHRIGRTARSTNK-GTAYTFFTPGNLKQARELIKVLEEAN 543
Query: 595 QNVSMELMDL 604
Q ++ +LM L
Sbjct: 544 QAINPKLMQL 553
Score = 43 (20.2 bits), Expect = 1.0e-92, Sum P(2) = 1.0e-92
Identities = 17/84 (20%), Positives = 24/84 (28%)
Query: 685 SNTPSEGFNNSASAYANKRPALRGFVSGGSIGGDVNGTQTTGLTGFVSGGSIGGEMSGTQ 744
S T G+ N S Y + A + G G G +G+ + G +
Sbjct: 610 SETDRAGYANG-SGYGSPNSAFGAQAGQYTYGQGTYGAAAYGTSGYTAQEYGAGTYGASS 668
Query: 745 TTXXXXXXXXXXXXRVNYGESAHQ 768
TT G S Q
Sbjct: 669 TTSTGRSSQSSSQQFSGIGRSGQQ 692
>UNIPROTKB|A7E307 [details] [associations]
symbol:DDX17 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0072358 "cardiovascular system development"
evidence=IEA] [GO:0009791 "post-embryonic development"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 GO:GO:0009791 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268804 GeneTree:ENSGT00660000095174
CTD:10521 HOVERGEN:HBG015893 KO:K13178 OrthoDB:EOG4QRH3N
GO:GO:0072358 EMBL:DAAA02014661 EMBL:DAAA02014662 EMBL:BC151648
IPI:IPI00914517 RefSeq:NP_001095463.1 UniGene:Bt.91623
Ensembl:ENSBTAT00000037682 GeneID:514323 KEGG:bta:514323
InParanoid:A7E307 OMA:QQFPQPP NextBio:20871275 Uniprot:A7E307
Length = 650
Score = 900 (321.9 bits), Expect = 2.7e-92, Sum P(2) = 2.7e-92
Identities = 188/430 (43%), Positives = 273/430 (63%)
Query: 179 LIDYEPFNKDFYQDSASISGMSEQDVMEYKKSLAIRVSGFDV-PRPVKTFEDCGFSTQLM 237
L + F K+FY + ++ ++ +V E ++ I V G DV P+PV F F +M
Sbjct: 45 LSELPKFEKNFYVEHPEVARLTPYEVDELRRKKEITVRGGDVCPKPVFAFHHANFPQYVM 104
Query: 238 HAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEE 297
+ Q + +PT IQCQ P+ LSGRD++GIA+TGSGKT A++LP IVHI QP L++ +
Sbjct: 105 DVLMDQHFTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAYLLPAIVHINHQPYLERGD 164
Query: 298 GPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPG 357
GPI ++ APTRELA Q+ + K ++ + +YGG K Q ++L+ G EI IATPG
Sbjct: 165 GPICLVLAPTRELAQQVQQVADDYGKCSRLKSTCIYGGAPKGPQIRDLERGVEICIATPG 224
Query: 358 RLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMPRKV 417
RLID L+ + R TYLVLDEADRM D+GFEPQIR IV QIRPDRQTL++SAT P++V
Sbjct: 225 RLIDFLESGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEV 284
Query: 418 EKLAREILSDPVRVTVGEVGM-ANEDITQVVHV-IPSDAE-KLPWLLEKLPGMIDDGDVL 474
+LA + L D ++ VG + + AN +I Q+V V + S+ + KL L+E++ + +
Sbjct: 285 RQLAEDFLRDYTQINVGNLELSANHNILQIVDVCMESEKDHKLIQLMEEIMAE-KENKTI 343
Query: 475 VFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGL 534
+F K D++ ++ + G+ A +HGDK Q R +L +F+SG +LIATDVA+RGL
Sbjct: 344 IFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPILIATDVASRGL 403
Query: 535 DIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELVNSLIAAG 594
D++ +K V+N+D + +VHRIGRT R+ +K GTAYT T + A EL+ L A
Sbjct: 404 DVEDVKFVINYDYPNSSEDYVHRIGRTARSTNK-GTAYTFFTPGNLKQARELIKVLEEAN 462
Query: 595 QNVSMELMDL 604
Q ++ +LM L
Sbjct: 463 QAINPKLMQL 472
Score = 39 (18.8 bits), Expect = 2.7e-92, Sum P(2) = 2.7e-92
Identities = 16/82 (19%), Positives = 23/82 (28%)
Query: 687 TPSEGFNNSASAYANKRPALRGFVSGGSIGGDVNGTQTTGLTGFVSGGSIGGEMSGTQTT 746
T G+ N S Y + A + G G G +G+ + G + TT
Sbjct: 529 TDRAGYANG-SGYGSPNSAFGAQAGQYTYGQGTYGAAAYGTSGYTAQEYGAGTYGASSTT 587
Query: 747 XXXXXXXXXXXXRVNYGESAHQ 768
G S Q
Sbjct: 588 STGRSSQSSSQQFSGIGRSGQQ 609
>UNIPROTKB|F1SKQ0 [details] [associations]
symbol:DDX17 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0072358 "cardiovascular system development"
evidence=IEA] [GO:0009791 "post-embryonic development"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 GO:GO:0009791 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00660000095174 GO:GO:0072358 OMA:QQFPQPP
EMBL:FP102457 Ensembl:ENSSSCT00000000110 Uniprot:F1SKQ0
Length = 736
Score = 900 (321.9 bits), Expect = 2.7e-92, Sum P(2) = 2.7e-92
Identities = 188/430 (43%), Positives = 273/430 (63%)
Query: 179 LIDYEPFNKDFYQDSASISGMSEQDVMEYKKSLAIRVSGFDV-PRPVKTFEDCGFSTQLM 237
L + F K+FY + ++ ++ +V E ++ I V G DV P+PV F F +M
Sbjct: 126 LSELPKFEKNFYVEHPEVARLTPYEVDELRRKKEITVRGGDVCPKPVFAFHHANFPQYVM 185
Query: 238 HAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEE 297
+ Q + +PT IQCQ P+ LSGRD++GIA+TGSGKT A++LP IVHI QP L++ +
Sbjct: 186 DVLMDQHFTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAYLLPAIVHINHQPYLERGD 245
Query: 298 GPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPG 357
GPI ++ APTRELA Q+ + K ++ + +YGG K Q ++L+ G EI IATPG
Sbjct: 246 GPICLVLAPTRELAQQVQQVADDYGKCSRLKSTCIYGGAPKGPQIRDLERGVEICIATPG 305
Query: 358 RLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMPRKV 417
RLID L+ + R TYLVLDEADRM D+GFEPQIR IV QIRPDRQTL++SAT P++V
Sbjct: 306 RLIDFLESGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEV 365
Query: 418 EKLAREILSDPVRVTVGEVGM-ANEDITQVVHV-IPSDAE-KLPWLLEKLPGMIDDGDVL 474
+LA + L D ++ VG + + AN +I Q+V V + S+ + KL L+E++ + +
Sbjct: 366 RQLAEDFLRDYTQINVGNLELSANHNILQIVDVCMESEKDHKLIQLMEEIMAE-KENKTI 424
Query: 475 VFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGL 534
+F K D++ ++ + G+ A +HGDK Q R +L +F+SG +LIATDVA+RGL
Sbjct: 425 IFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPILIATDVASRGL 484
Query: 535 DIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELVNSLIAAG 594
D++ +K V+N+D + +VHRIGRT R+ +K GTAYT T + A EL+ L A
Sbjct: 485 DVEDVKFVINYDYPNSSEDYVHRIGRTARSTNK-GTAYTFFTPGNLKQARELIKVLEEAN 543
Query: 595 QNVSMELMDL 604
Q ++ +LM L
Sbjct: 544 QAINPKLMQL 553
Score = 39 (18.8 bits), Expect = 2.7e-92, Sum P(2) = 2.7e-92
Identities = 16/82 (19%), Positives = 23/82 (28%)
Query: 687 TPSEGFNNSASAYANKRPALRGFVSGGSIGGDVNGTQTTGLTGFVSGGSIGGEMSGTQTT 746
T G+ N S Y + A + G G G +G+ + G + TT
Sbjct: 612 TDRAGYANG-SGYGSPNSAFGAQAGQYTYGQGTYGAAAYGTSGYTAQEYGAGTYGASSTT 670
Query: 747 XXXXXXXXXXXXRVNYGESAHQ 768
G S Q
Sbjct: 671 STGRSSQSSSQQFSGIGRSGQQ 692
>UNIPROTKB|Q5R4I9 [details] [associations]
symbol:DDX5 "Probable ATP-dependent RNA helicase DDX5"
species:9601 "Pongo abelii" [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=ISS]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=ISS] [GO:0003713 "transcription coactivator
activity" evidence=ISS] [GO:0003724 "RNA helicase activity"
evidence=ISS] [GO:0005730 "nucleolus" evidence=ISS] [GO:0030331
"estrogen receptor binding" evidence=ISS] [GO:0043517 "positive
regulation of DNA damage response, signal transduction by p53 class
mediator" evidence=ISS] [GO:0045667 "regulation of osteoblast
differentiation" evidence=ISS] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=ISS]
[GO:0050681 "androgen receptor binding" evidence=ISS] [GO:0060765
"regulation of androgen receptor signaling pathway" evidence=ISS]
[GO:0072332 "intrinsic apoptotic signaling pathway by p53 class
mediator" evidence=ISS] [GO:2001014 "regulation of skeletal muscle
cell differentiation" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012587
Pfam:PF00270 Pfam:PF00271 Pfam:PF08061 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0008380 GO:GO:0006397 GO:GO:0045944 GO:GO:0006351
GO:GO:0005681 GO:GO:0003723 GO:GO:0000122 GO:GO:0003713
GO:GO:0050681 GO:GO:0043517 GO:GO:0030331 GO:GO:0060765
GO:GO:0045667 GO:GO:0072332 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 GO:GO:0000381 GO:GO:0003724
InterPro:IPR014014 PROSITE:PS51195 KO:K12823 HOVERGEN:HBG015893
GO:GO:2001014 HSSP:P10081 CTD:1655 EMBL:CR861259
RefSeq:NP_001126958.1 UniGene:Pab.18500 ProteinModelPortal:Q5R4I9
PRIDE:Q5R4I9 GeneID:100173977 KEGG:pon:100173977 InParanoid:Q5R4I9
Uniprot:Q5R4I9
Length = 614
Score = 917 (327.9 bits), Expect = 5.0e-92, P = 5.0e-92
Identities = 187/439 (42%), Positives = 279/439 (63%)
Query: 180 IDYEP-FNKDFYQDSASISGMSEQDVMEYKKSLAIRVSGFDVPRPVKTFEDCGFSTQLMH 238
+D P F K+FYQ+ ++ + Q+V Y++S I V G + P+PV F + F +M
Sbjct: 48 LDEPPKFEKNFYQEHPDLARRTAQEVETYRRSKEITVRGHNCPKPVLNFYEANFPANVMD 107
Query: 239 AISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEG 298
I++Q + +PT+IQ Q P+ LSG D++G+A+TGSGKT +++LP IVHI QP L++ +G
Sbjct: 108 VIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDG 167
Query: 299 PIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGR 358
PI ++ APTRELA Q+ ++ ++ ++ + +YGG K Q ++L+ G EI IATPGR
Sbjct: 168 PICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGR 227
Query: 359 LIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMPRKVE 418
LID L+ + R TYLVLDEADRM D+GFEPQIR IV QIRPDRQTL++SAT P++V
Sbjct: 228 LIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVR 287
Query: 419 KLAREILSDPVRVTVGEVGM-ANEDITQVV---HVIPSDAEKLPWLLEKLPGMIDDGDVL 474
+LA + L D + + +G + + AN +I Q+V H + D EKL L+E++ + +
Sbjct: 288 QLAEDFLKDYIHINIGALELSANHNILQIVDVCHDVEKD-EKLIRLMEEIMSE-KENKTI 345
Query: 475 VFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGL 534
VF K DE+ ++ + G+ A +HGDK Q R +L +FK G +LIATDVA+RGL
Sbjct: 346 VFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIATDVASRGL 405
Query: 535 DIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELVNSLIAAG 594
D++ +K V+N+D + ++HRIGRT R+ K GTAYT T + +L++ L A
Sbjct: 406 DVEDVKFVINYDYPNSSEDYIHRIGRTARS-TKTGTAYTFFTPNNIKQVSDLISVLREAN 464
Query: 595 QNVSMELMDLAMKDGRFRS 613
Q ++ +L+ L G RS
Sbjct: 465 QAINPKLLQLVEDRGSGRS 483
>UNIPROTKB|F1MBQ8 [details] [associations]
symbol:DDX5 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0072332 "intrinsic apoptotic signaling pathway by p53
class mediator" evidence=IEA] [GO:0071013 "catalytic step 2
spliceosome" evidence=IEA] [GO:0060765 "regulation of androgen
receptor signaling pathway" evidence=IEA] [GO:0050681 "androgen
receptor binding" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0043517 "positive regulation of DNA damage response, signal
transduction by p53 class mediator" evidence=IEA] [GO:0036002
"pre-mRNA binding" evidence=IEA] [GO:0033148 "positive regulation
of intracellular estrogen receptor signaling pathway" evidence=IEA]
[GO:0030331 "estrogen receptor binding" evidence=IEA] [GO:0007623
"circadian rhythm" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0003713 "transcription coactivator activity"
evidence=IEA] [GO:0001701 "in utero embryonic development"
evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=IEA] [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0003724 "RNA helicase
activity" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012587 Pfam:PF00270 Pfam:PF00271
Pfam:PF08061 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005730 GO:GO:0001701 GO:GO:0045944
GO:GO:0000122 GO:GO:0003713 GO:GO:0033148 GO:GO:0043517
GO:GO:0060765 GO:GO:0072332 GO:GO:0071013 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 GO:GO:0000381
GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0036002
KO:K12823 OMA:IDAMSGY GeneTree:ENSGT00660000095174 CTD:1655
EMBL:DAAA02049347 IPI:IPI01002739 RefSeq:NP_001178324.1
UniGene:Bt.64934 ProteinModelPortal:F1MBQ8 SMR:F1MBQ8 PRIDE:F1MBQ8
Ensembl:ENSBTAT00000024514 GeneID:533700 KEGG:bta:533700
NextBio:20876124 ArrayExpress:F1MBQ8 Uniprot:F1MBQ8
Length = 614
Score = 915 (327.2 bits), Expect = 8.1e-92, P = 8.1e-92
Identities = 187/439 (42%), Positives = 279/439 (63%)
Query: 180 IDYEP-FNKDFYQDSASISGMSEQDVMEYKKSLAIRVSGFDVPRPVKTFEDCGFSTQLMH 238
+D P F K+FYQ+ ++ + Q+V Y++S I V G + P+PV F + F +M
Sbjct: 48 LDELPKFEKNFYQEHPDLARRTAQEVETYRRSKEITVRGHNCPKPVLNFYEANFPANVMD 107
Query: 239 AISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEG 298
I++Q + +PT+IQ Q P+ LSG D++G+A+TGSGKT +++LP IVHI QP L++ +G
Sbjct: 108 VIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDG 167
Query: 299 PIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGR 358
PI ++ APTRELA Q+ ++ ++ ++ + +YGG K Q ++L+ G EI IATPGR
Sbjct: 168 PICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGR 227
Query: 359 LIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMPRKVE 418
LID L+ + R TYLVLDEADRM D+GFEPQIR IV QIRPDRQTL++SAT P++V
Sbjct: 228 LIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVR 287
Query: 419 KLAREILSDPVRVTVGEVGM-ANEDITQVV---HVIPSDAEKLPWLLEKLPGMIDDGDVL 474
+LA + L D + + +G + + AN +I Q+V H + D EKL L+E++ + +
Sbjct: 288 QLAEDFLKDYIHINIGALELSANHNILQIVDVCHDVEKD-EKLIRLMEEIMSE-KENKTI 345
Query: 475 VFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGL 534
VF K DE+ ++ + G+ A +HGDK Q R +L +FK G +LIATDVA+RGL
Sbjct: 346 VFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIATDVASRGL 405
Query: 535 DIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELVNSLIAAG 594
D++ +K V+N+D + ++HRIGRT R+ K GTAYT T + +L++ L A
Sbjct: 406 DVEDVKFVINYDYPNSSEDYIHRIGRTARS-TKTGTAYTFFTPNNIKQVSDLISVLREAN 464
Query: 595 QNVSMELMDLAMKDGRFRS 613
Q ++ +L+ L G RS
Sbjct: 465 QAINPKLLQLVEDRGSGRS 483
>UNIPROTKB|F1PEA6 [details] [associations]
symbol:DDX5 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003724 "RNA helicase
activity" evidence=IEA] [GO:0003712 "transcription cofactor
activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012587 Pfam:PF00270 Pfam:PF00271
Pfam:PF08061 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0003676 GO:GO:0003712
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195 OMA:IDAMSGY
GeneTree:ENSGT00660000095174 EMBL:AAEX03006361
Ensembl:ENSCAFT00000018595 Uniprot:F1PEA6
Length = 671
Score = 915 (327.2 bits), Expect = 8.1e-92, P = 8.1e-92
Identities = 187/439 (42%), Positives = 279/439 (63%)
Query: 180 IDYEP-FNKDFYQDSASISGMSEQDVMEYKKSLAIRVSGFDVPRPVKTFEDCGFSTQLMH 238
+D P F K+FYQ+ ++ + Q+V Y++S I V G + P+PV F + F +M
Sbjct: 105 LDELPKFEKNFYQEHPDLARRTAQEVETYRRSKEITVRGHNCPKPVLNFYEANFPANVMD 164
Query: 239 AISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEG 298
I++Q + +PT+IQ Q P+ LSG D++G+A+TGSGKT +++LP IVHI QP L++ +G
Sbjct: 165 VIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDG 224
Query: 299 PIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGR 358
PI ++ APTRELA Q+ ++ ++ ++ + +YGG K Q ++L+ G EI IATPGR
Sbjct: 225 PICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGR 284
Query: 359 LIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMPRKVE 418
LID L+ + R TYLVLDEADRM D+GFEPQIR IV QIRPDRQTL++SAT P++V
Sbjct: 285 LIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVR 344
Query: 419 KLAREILSDPVRVTVGEVGM-ANEDITQVV---HVIPSDAEKLPWLLEKLPGMIDDGDVL 474
+LA + L D + + +G + + AN +I Q+V H + D EKL L+E++ + +
Sbjct: 345 QLAEDFLKDYIHINIGALELSANHNILQIVDVCHDVEKD-EKLIRLMEEIMSE-KENKTI 402
Query: 475 VFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGL 534
VF K DE+ ++ + G+ A +HGDK Q R +L +FK G +LIATDVA+RGL
Sbjct: 403 VFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIATDVASRGL 462
Query: 535 DIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELVNSLIAAG 594
D++ +K V+N+D + ++HRIGRT R+ K GTAYT T + +L++ L A
Sbjct: 463 DVEDVKFVINYDYPNSSEDYIHRIGRTARS-TKTGTAYTFFTPNNIKQVSDLISVLREAN 521
Query: 595 QNVSMELMDLAMKDGRFRS 613
Q ++ +L+ L G RS
Sbjct: 522 QAINPKLLQLVEDRGSGRS 540
>UNIPROTKB|J3KTA4 [details] [associations]
symbol:DDX5 "Probable ATP-dependent RNA helicase DDX5"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003712 "transcription cofactor activity"
evidence=IEA] [GO:0003724 "RNA helicase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012587 Pfam:PF00270 Pfam:PF00271
Pfam:PF08061 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0003676 GO:GO:0003712
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
EMBL:AC009994 GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195
HGNC:HGNC:2746 ChiTaRS:DDX5 ProteinModelPortal:J3KTA4
Ensembl:ENST00000578804 Uniprot:J3KTA4
Length = 614
Score = 915 (327.2 bits), Expect = 8.1e-92, P = 8.1e-92
Identities = 187/439 (42%), Positives = 279/439 (63%)
Query: 180 IDYEP-FNKDFYQDSASISGMSEQDVMEYKKSLAIRVSGFDVPRPVKTFEDCGFSTQLMH 238
+D P F K+FYQ+ ++ + Q+V Y++S I V G + P+PV F + F +M
Sbjct: 48 LDELPKFEKNFYQEHPDLARRTAQEVETYRRSKEITVRGHNCPKPVLNFYEANFPANVMD 107
Query: 239 AISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEG 298
I++Q + +PT+IQ Q P+ LSG D++G+A+TGSGKT +++LP IVHI QP L++ +G
Sbjct: 108 VIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDG 167
Query: 299 PIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGR 358
PI ++ APTRELA Q+ ++ ++ ++ + +YGG K Q ++L+ G EI IATPGR
Sbjct: 168 PICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGR 227
Query: 359 LIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMPRKVE 418
LID L+ + R TYLVLDEADRM D+GFEPQIR IV QIRPDRQTL++SAT P++V
Sbjct: 228 LIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVR 287
Query: 419 KLAREILSDPVRVTVGEVGM-ANEDITQVV---HVIPSDAEKLPWLLEKLPGMIDDGDVL 474
+LA + L D + + +G + + AN +I Q+V H + D EKL L+E++ + +
Sbjct: 288 QLAEDFLKDYIHINIGALELSANHNILQIVDVCHDVEKD-EKLIRLMEEIMSE-KENKTI 345
Query: 475 VFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGL 534
VF K DE+ ++ + G+ A +HGDK Q R +L +FK G +LIATDVA+RGL
Sbjct: 346 VFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIATDVASRGL 405
Query: 535 DIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELVNSLIAAG 594
D++ +K V+N+D + ++HRIGRT R+ K GTAYT T + +L++ L A
Sbjct: 406 DVEDVKFVINYDYPNSSEDYIHRIGRTARS-TKTGTAYTFFTPNNIKQVSDLISVLREAN 464
Query: 595 QNVSMELMDLAMKDGRFRS 613
Q ++ +L+ L G RS
Sbjct: 465 QAINPKLLQLVEDRGSGRS 483
>UNIPROTKB|P17844 [details] [associations]
symbol:DDX5 "Probable ATP-dependent RNA helicase DDX5"
species:9606 "Homo sapiens" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0001701 "in utero embryonic development" evidence=IEA]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=IEA]
[GO:0005516 "calmodulin binding" evidence=IEA] [GO:0007623
"circadian rhythm" evidence=IEA] [GO:0019899 "enzyme binding"
evidence=IEA] [GO:0045069 "regulation of viral genome replication"
evidence=IEA] [GO:0048306 "calcium-dependent protein binding"
evidence=IEA] [GO:0003724 "RNA helicase activity" evidence=IMP;NAS]
[GO:0016049 "cell growth" evidence=NAS] [GO:0005634 "nucleus"
evidence=IDA;NAS] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC] [GO:0005515 "protein binding" evidence=IPI]
[GO:0043517 "positive regulation of DNA damage response, signal
transduction by p53 class mediator" evidence=IMP] [GO:0072332
"intrinsic apoptotic signaling pathway by p53 class mediator"
evidence=IMP] [GO:0005730 "nucleolus" evidence=IDA] [GO:2001014
"regulation of skeletal muscle cell differentiation" evidence=ISS]
[GO:0045667 "regulation of osteoblast differentiation"
evidence=ISS] [GO:0000122 "negative regulation of transcription
from RNA polymerase II promoter" evidence=IDA] [GO:0050681
"androgen receptor binding" evidence=IDA] [GO:0060765 "regulation
of androgen receptor signaling pathway" evidence=IMP] [GO:0033148
"positive regulation of intracellular estrogen receptor signaling
pathway" evidence=IDA] [GO:0003713 "transcription coactivator
activity" evidence=IDA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IDA]
[GO:0030331 "estrogen receptor binding" evidence=IDA] [GO:0036002
"pre-mRNA binding" evidence=IDA] [GO:0000381 "regulation of
alternative mRNA splicing, via spliceosome" evidence=IDA]
[GO:0030529 "ribonucleoprotein complex" evidence=IDA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012587 Pfam:PF00270 Pfam:PF00271 Pfam:PF08061
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005730 GO:GO:0016049 GO:GO:0001701 GO:GO:0045944
GO:GO:0006351 GO:GO:0000122 GO:GO:0003713 EMBL:CH471109
GO:GO:0033148 GO:GO:0050681 GO:GO:0043517 GO:GO:0030331
GO:GO:0060765 GO:GO:0045667 GO:GO:0072332 GO:GO:0000398
GO:GO:0071013 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0045069 GO:GO:0004004 GO:GO:0000381 eggNOG:COG0513
GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0036002
HOGENOM:HOG000268804 KO:K12823 OMA:IDAMSGY HOVERGEN:HBG015893
GO:GO:2001014 EMBL:X52104 EMBL:AF015812 EMBL:BT006943 EMBL:AB451257
EMBL:BC016027 EMBL:X15729 EMBL:AJ010931 IPI:IPI00017617 PIR:JC1087
RefSeq:NP_004387.1 UniGene:Hs.279806 PDB:3FE2 PDB:4A4D PDBsum:3FE2
PDBsum:4A4D ProteinModelPortal:P17844 SMR:P17844 DIP:DIP-29844N
IntAct:P17844 MINT:MINT-5000516 STRING:P17844 PhosphoSite:P17844
DMDM:129383 SWISS-2DPAGE:P17844 PaxDb:P17844 PeptideAtlas:P17844
PRIDE:P17844 DNASU:1655 Ensembl:ENST00000225792
Ensembl:ENST00000574715 GeneID:1655 KEGG:hsa:1655 UCSC:uc002jej.2
CTD:1655 GeneCards:GC17M062494 HGNC:HGNC:2746 HPA:CAB005868
HPA:HPA020043 MIM:180630 neXtProt:NX_P17844 PharmGKB:PA27228
InParanoid:P17844 OrthoDB:EOG4BVRTM PhylomeDB:P17844 ChiTaRS:DDX5
EvolutionaryTrace:P17844 GenomeRNAi:1655 NextBio:6816
ArrayExpress:P17844 Bgee:P17844 CleanEx:HS_DDX5
Genevestigator:P17844 GermOnline:ENSG00000108654 Uniprot:P17844
Length = 614
Score = 915 (327.2 bits), Expect = 8.1e-92, P = 8.1e-92
Identities = 187/439 (42%), Positives = 279/439 (63%)
Query: 180 IDYEP-FNKDFYQDSASISGMSEQDVMEYKKSLAIRVSGFDVPRPVKTFEDCGFSTQLMH 238
+D P F K+FYQ+ ++ + Q+V Y++S I V G + P+PV F + F +M
Sbjct: 48 LDELPKFEKNFYQEHPDLARRTAQEVETYRRSKEITVRGHNCPKPVLNFYEANFPANVMD 107
Query: 239 AISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEG 298
I++Q + +PT+IQ Q P+ LSG D++G+A+TGSGKT +++LP IVHI QP L++ +G
Sbjct: 108 VIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDG 167
Query: 299 PIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGR 358
PI ++ APTRELA Q+ ++ ++ ++ + +YGG K Q ++L+ G EI IATPGR
Sbjct: 168 PICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGR 227
Query: 359 LIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMPRKVE 418
LID L+ + R TYLVLDEADRM D+GFEPQIR IV QIRPDRQTL++SAT P++V
Sbjct: 228 LIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVR 287
Query: 419 KLAREILSDPVRVTVGEVGM-ANEDITQVV---HVIPSDAEKLPWLLEKLPGMIDDGDVL 474
+LA + L D + + +G + + AN +I Q+V H + D EKL L+E++ + +
Sbjct: 288 QLAEDFLKDYIHINIGALELSANHNILQIVDVCHDVEKD-EKLIRLMEEIMSE-KENKTI 345
Query: 475 VFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGL 534
VF K DE+ ++ + G+ A +HGDK Q R +L +FK G +LIATDVA+RGL
Sbjct: 346 VFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIATDVASRGL 405
Query: 535 DIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELVNSLIAAG 594
D++ +K V+N+D + ++HRIGRT R+ K GTAYT T + +L++ L A
Sbjct: 406 DVEDVKFVINYDYPNSSEDYIHRIGRTARS-TKTGTAYTFFTPNNIKQVSDLISVLREAN 464
Query: 595 QNVSMELMDLAMKDGRFRS 613
Q ++ +L+ L G RS
Sbjct: 465 QAINPKLLQLVEDRGSGRS 483
>UNIPROTKB|Q4R6M5 [details] [associations]
symbol:DDX5 "Probable ATP-dependent RNA helicase DDX5"
species:9541 "Macaca fascicularis" [GO:0000122 "negative regulation
of transcription from RNA polymerase II promoter" evidence=ISS]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=ISS] [GO:0003713 "transcription coactivator
activity" evidence=ISS] [GO:0003724 "RNA helicase activity"
evidence=ISS] [GO:0005730 "nucleolus" evidence=ISS] [GO:0030331
"estrogen receptor binding" evidence=ISS] [GO:0043517 "positive
regulation of DNA damage response, signal transduction by p53 class
mediator" evidence=ISS] [GO:0045667 "regulation of osteoblast
differentiation" evidence=ISS] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=ISS]
[GO:0050681 "androgen receptor binding" evidence=ISS] [GO:0060765
"regulation of androgen receptor signaling pathway" evidence=ISS]
[GO:0072332 "intrinsic apoptotic signaling pathway by p53 class
mediator" evidence=ISS] [GO:2001014 "regulation of skeletal muscle
cell differentiation" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012587
Pfam:PF00270 Pfam:PF00271 Pfam:PF08061 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0008380 GO:GO:0006397 GO:GO:0045944 GO:GO:0006351
GO:GO:0005681 GO:GO:0003723 GO:GO:0000122 GO:GO:0003713
GO:GO:0050681 GO:GO:0043517 GO:GO:0030331 GO:GO:0060765
GO:GO:0045667 GO:GO:0072332 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 GO:GO:0000381 GO:GO:0003724
InterPro:IPR014014 PROSITE:PS51195 HOVERGEN:HBG015893 GO:GO:2001014
HSSP:P10081 EMBL:AB169157 ProteinModelPortal:Q4R6M5 PRIDE:Q4R6M5
Uniprot:Q4R6M5
Length = 614
Score = 915 (327.2 bits), Expect = 8.1e-92, P = 8.1e-92
Identities = 187/439 (42%), Positives = 279/439 (63%)
Query: 180 IDYEP-FNKDFYQDSASISGMSEQDVMEYKKSLAIRVSGFDVPRPVKTFEDCGFSTQLMH 238
+D P F K+FYQ+ ++ + Q+V Y++S I V G + P+PV F + F +M
Sbjct: 48 LDELPKFEKNFYQEHPDLARRTAQEVETYRRSKEITVRGHNCPKPVLNFYEANFPANVMD 107
Query: 239 AISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEG 298
I++Q + +PT+IQ Q P+ LSG D++G+A+TGSGKT +++LP IVHI QP L++ +G
Sbjct: 108 VIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDG 167
Query: 299 PIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGR 358
PI ++ APTRELA Q+ ++ ++ ++ + +YGG K Q ++L+ G EI IATPGR
Sbjct: 168 PICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGR 227
Query: 359 LIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMPRKVE 418
LID L+ + R TYLVLDEADRM D+GFEPQIR IV QIRPDRQTL++SAT P++V
Sbjct: 228 LIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVR 287
Query: 419 KLAREILSDPVRVTVGEVGM-ANEDITQVV---HVIPSDAEKLPWLLEKLPGMIDDGDVL 474
+LA + L D + + +G + + AN +I Q+V H + D EKL L+E++ + +
Sbjct: 288 QLAEDFLKDYIHINIGALELSANHNILQIVDVCHDVEKD-EKLIRLMEEIMSE-KENKTI 345
Query: 475 VFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGL 534
VF K DE+ ++ + G+ A +HGDK Q R +L +FK G +LIATDVA+RGL
Sbjct: 346 VFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERGWVLNEFKHGKAPILIATDVASRGL 405
Query: 535 DIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELVNSLIAAG 594
D++ +K V+N+D + ++HRIGRT R+ K GTAYT T + +L++ L A
Sbjct: 406 DVEDVKFVINYDYPNSSEDYIHRIGRTARS-TKTGTAYTFFTPNNIKQVSDLISVLREAN 464
Query: 595 QNVSMELMDLAMKDGRFRS 613
Q ++ +L+ L G RS
Sbjct: 465 QAINPKLLQLVEDRGSGRS 483
>UNIPROTKB|E1C2R8 [details] [associations]
symbol:DDX17 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0009791 "post-embryonic
development" evidence=IEA] [GO:0072358 "cardiovascular system
development" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00660000095174
OMA:QQFPQPP EMBL:AADN02006148 EMBL:AADN02006147 IPI:IPI00594176
Ensembl:ENSGALT00000020002 Uniprot:E1C2R8
Length = 496
Score = 914 (326.8 bits), Expect = 1.0e-91, P = 1.0e-91
Identities = 187/424 (44%), Positives = 273/424 (64%)
Query: 185 FNKDFYQDSASISGMSEQDVMEYKKSLAIRVSGFD-VPRPVKTFEDCGFSTQLMHAISKQ 243
F K+FY + ++ ++ +V E ++ I + G + P+PV F C F +M A+ Q
Sbjct: 49 FEKNFYVEHPEVARLTPYEVEELRRKKEITIRGMEGCPKPVFAFHQCSFPQYVMDALMDQ 108
Query: 244 GYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVI 303
+ +PT IQCQ P+ LSGRD++GIA+TGSGKT A++LP IVHI QP L++ +GPI ++
Sbjct: 109 NFTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAYLLPAIVHINHQPYLERGDGPICLV 168
Query: 304 CAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDML 363
APTRELA Q+ + K ++ + +YGG K Q ++L+ G EI IATPGRLID L
Sbjct: 169 LAPTRELAQQVQQVADDYGKCSRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFL 228
Query: 364 KMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLARE 423
+ + R TYLVLDEADRM D+GFEPQIR IV QIRPDRQTL++SAT P++V +LA +
Sbjct: 229 EAGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAED 288
Query: 424 ILSDPVRVTVGEVGM-ANEDITQVVHV-IPSDAE-KLPWLLEKLPGMIDDGDVLVFASKK 480
L D V++ VG + + AN +I Q+V V + S+ + KL L+E++ + ++F K
Sbjct: 289 FLQDYVQINVGNLELSANHNILQIVDVCMESEKDHKLIQLMEEIMAE-KENKTIIFVETK 347
Query: 481 TTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIK 540
D++ ++ + G+ A +HGDK Q R +L +F+SG +LIATDVA+RGLD++ +K
Sbjct: 348 RRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPILIATDVASRGLDVEDVK 407
Query: 541 SVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELVNSLIAAGQNVSME 600
V+N+D + +VHRIGRT R+ +K GTAYT T + A EL+ L A Q ++ +
Sbjct: 408 FVINYDYPNSSEDYVHRIGRTARSTNK-GTAYTFFTPGNLKQARELIKVLEEANQAINPK 466
Query: 601 LMDL 604
LM L
Sbjct: 467 LMQL 470
>MGI|MGI:105037 [details] [associations]
symbol:Ddx5 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 5"
species:10090 "Mus musculus" [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=ISO]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0000381
"regulation of alternative mRNA splicing, via spliceosome"
evidence=ISO] [GO:0001701 "in utero embryonic development"
evidence=IMP] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003712 "transcription cofactor activity" evidence=IDA]
[GO:0003713 "transcription coactivator activity" evidence=ISO]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0003724 "RNA helicase
activity" evidence=ISO] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISO] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005516 "calmodulin binding" evidence=ISO] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IC]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0005730
"nucleolus" evidence=ISO] [GO:0006200 "ATP catabolic process"
evidence=ISO] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0007623 "circadian rhythm" evidence=IMP]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0016818 "hydrolase activity, acting on
acid anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0019899 "enzyme binding" evidence=ISO] [GO:0030331 "estrogen
receptor binding" evidence=ISO] [GO:0030529 "ribonucleoprotein
complex" evidence=ISO] [GO:0033148 "positive regulation of
intracellular estrogen receptor signaling pathway" evidence=ISO]
[GO:0036002 "pre-mRNA binding" evidence=ISO] [GO:0043517 "positive
regulation of DNA damage response, signal transduction by p53 class
mediator" evidence=ISO] [GO:0045069 "regulation of viral genome
replication" evidence=ISO] [GO:0045667 "regulation of osteoblast
differentiation" evidence=IMP] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=IDA] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=ISO] [GO:0048306 "calcium-dependent protein binding"
evidence=ISO] [GO:0050681 "androgen receptor binding" evidence=ISO]
[GO:0060765 "regulation of androgen receptor signaling pathway"
evidence=ISO] [GO:0071013 "catalytic step 2 spliceosome"
evidence=ISO] [GO:0072332 "intrinsic apoptotic signaling pathway by
p53 class mediator" evidence=ISO] [GO:2001014 "regulation of
skeletal muscle cell differentiation" evidence=IMP]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012587 Pfam:PF00270 Pfam:PF00271 Pfam:PF08061
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 MGI:MGI:105037
GO:GO:0005524 GO:GO:0005730 GO:GO:0008380 GO:GO:0007623
GO:GO:0001701 GO:GO:0006397 GO:GO:0045944 GO:GO:0006351
GO:GO:0005681 GO:GO:0003723 GO:GO:0000122 GO:GO:0003713
GO:GO:0030529 GO:GO:0050681 GO:GO:0043517 GO:GO:0030331
GO:GO:0060765 GO:GO:0045667 GO:GO:0072332 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 GO:GO:0000381
EMBL:AL603664 eggNOG:COG0513 GO:GO:0003724 InterPro:IPR014014
PROSITE:PS51195 HOVERGEN:HBG015893 GO:GO:2001014 OrthoDB:EOG4BVRTM
ChiTaRS:DDX5 EMBL:X65627 IPI:IPI00420363 PIR:I48385
UniGene:Mm.220038 ProteinModelPortal:Q61656 SMR:Q61656
DIP:DIP-32293N IntAct:Q61656 STRING:Q61656 PhosphoSite:Q61656
PaxDb:Q61656 PRIDE:Q61656 InParanoid:Q61656 CleanEx:MM_DDX5
Genevestigator:Q61656 GermOnline:ENSMUSG00000020719 Uniprot:Q61656
Length = 614
Score = 914 (326.8 bits), Expect = 1.0e-91, P = 1.0e-91
Identities = 187/439 (42%), Positives = 279/439 (63%)
Query: 180 IDYEP-FNKDFYQDSASISGMSEQDVMEYKKSLAIRVSGFDVPRPVKTFEDCGFSTQLMH 238
+D P F K+FYQ+ ++ + Q+V Y++S I V G + P+PV F + F +M
Sbjct: 48 LDELPKFEKNFYQEHPDLARRTAQEVDTYRRSKEITVRGHNCPKPVLNFYEANFPANVMD 107
Query: 239 AISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEG 298
I++Q + +PT+IQ Q P+ LSG D++G+A+TGSGKT +++LP IVHI QP L++ +G
Sbjct: 108 VIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDG 167
Query: 299 PIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGR 358
PI ++ APTRELA Q+ ++ ++ ++ + +YGG K Q ++L+ G EI IATPGR
Sbjct: 168 PICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGR 227
Query: 359 LIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMPRKVE 418
LID L+ + R TYLVLDEADRM D+GFEPQIR IV QIRPDRQTL++SAT P++V
Sbjct: 228 LIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVR 287
Query: 419 KLAREILSDPVRVTVGEVGM-ANEDITQVV---HVIPSDAEKLPWLLEKLPGMIDDGDVL 474
+LA + L D + + +G + + AN +I Q+V H + D EKL L+E++ + +
Sbjct: 288 QLAEDFLKDYIHINIGALELSANHNILQIVDVCHDVEKD-EKLIRLMEEIMSE-KENKTI 345
Query: 475 VFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGL 534
VF K DE+ ++ + G+ A +HGDK Q R +L +FK G +LIATDVA+RGL
Sbjct: 346 VFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIATDVASRGL 405
Query: 535 DIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELVNSLIAAG 594
D++ +K V+N+D + ++HRIGRT R+ K GTAYT T + +L++ L A
Sbjct: 406 DVEDVKFVINYDYPNSSEDYIHRIGRTARS-TKTGTAYTFFTPNNIKQVSDLISVLREAN 464
Query: 595 QNVSMELMDLAMKDGRFRS 613
Q ++ +L+ L G RS
Sbjct: 465 QAINPKLLQLVEDRGSGRS 483
>RGD|619906 [details] [associations]
symbol:Ddx5 "DEAD (Asp-Glu-Ala-Asp) box helicase 5" species:10116
"Rattus norvegicus" [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IEA;ISO]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=IEA;ISO] [GO:0001701 "in utero embryonic
development" evidence=IEA;ISO] [GO:0003712 "transcription cofactor
activity" evidence=ISO] [GO:0003713 "transcription coactivator
activity" evidence=IEA;ISO] [GO:0003724 "RNA helicase activity"
evidence=ISO] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005516 "calmodulin binding" evidence=IDA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005730 "nucleolus" evidence=IEA;ISO] [GO:0007623 "circadian
rhythm" evidence=IEA;ISO] [GO:0019899 "enzyme binding"
evidence=IDA] [GO:0030331 "estrogen receptor binding"
evidence=IEA;ISO] [GO:0030529 "ribonucleoprotein complex"
evidence=ISO] [GO:0033148 "positive regulation of intracellular
estrogen receptor signaling pathway" evidence=IEA;ISO] [GO:0036002
"pre-mRNA binding" evidence=IEA;ISO] [GO:0043517 "positive
regulation of DNA damage response, signal transduction by p53 class
mediator" evidence=IEA;ISO] [GO:0045069 "regulation of viral genome
replication" evidence=IMP] [GO:0045667 "regulation of osteoblast
differentiation" evidence=ISO] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=ISO] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IEA;ISO] [GO:0048306 "calcium-dependent protein binding"
evidence=IDA] [GO:0050681 "androgen receptor binding"
evidence=IEA;ISO] [GO:0060765 "regulation of androgen receptor
signaling pathway" evidence=IEA;ISO] [GO:0071013 "catalytic step 2
spliceosome" evidence=IEA;ISO] [GO:0072332 "intrinsic apoptotic
signaling pathway by p53 class mediator" evidence=IEA;ISO]
[GO:2001014 "regulation of skeletal muscle cell differentiation"
evidence=ISO] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012587 Pfam:PF00270 Pfam:PF00271
Pfam:PF08061 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
RGD:619906 GO:GO:0005524 GO:GO:0005730 GO:GO:0001701 GO:GO:0045944
GO:GO:0019899 GO:GO:0000122 GO:GO:0003713 GO:GO:0005516
GO:GO:0048306 GO:GO:0033148 GO:GO:0043517 GO:GO:0060765
EMBL:CH473948 GO:GO:0072332 GO:GO:0071013 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0045069 GO:GO:0004004
GO:GO:0000381 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0036002
HOGENOM:HOG000268804 KO:K12823 OMA:IDAMSGY
GeneTree:ENSGT00660000095174 HOVERGEN:HBG015893 CTD:1655
EMBL:BC079036 IPI:IPI00464718 RefSeq:NP_001007614.1
UniGene:Rn.162208 IntAct:Q6AYI1 STRING:Q6AYI1
Ensembl:ENSRNOT00000048490 GeneID:287765 KEGG:rno:287765
UCSC:RGD:619906 InParanoid:Q6AYI1 NextBio:626970
Genevestigator:Q6AYI1 Uniprot:Q6AYI1
Length = 615
Score = 914 (326.8 bits), Expect = 1.0e-91, P = 1.0e-91
Identities = 187/439 (42%), Positives = 279/439 (63%)
Query: 180 IDYEP-FNKDFYQDSASISGMSEQDVMEYKKSLAIRVSGFDVPRPVKTFEDCGFSTQLMH 238
+D P F K+FYQ+ ++ + Q+V Y++S I V G + P+PV F + F +M
Sbjct: 48 LDELPKFEKNFYQEHPDLARRTAQEVDTYRRSKEITVRGHNCPKPVLNFYEANFPANVMD 107
Query: 239 AISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEG 298
I++Q + +PT+IQ Q P+ LSG D++G+A+TGSGKT +++LP IVHI QP L++ +G
Sbjct: 108 VIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDG 167
Query: 299 PIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGR 358
PI ++ APTRELA Q+ ++ ++ ++ + +YGG K Q ++L+ G EI IATPGR
Sbjct: 168 PICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGR 227
Query: 359 LIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMPRKVE 418
LID L+ + R TYLVLDEADRM D+GFEPQIR IV QIRPDRQTL++SAT P++V
Sbjct: 228 LIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVR 287
Query: 419 KLAREILSDPVRVTVGEVGM-ANEDITQVV---HVIPSDAEKLPWLLEKLPGMIDDGDVL 474
+LA + L D + + +G + + AN +I Q+V H + D EKL L+E++ + +
Sbjct: 288 QLAEDFLKDYIHINIGALELSANHNILQIVDVCHDVEKD-EKLIRLMEEIMSE-KENKTI 345
Query: 475 VFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGL 534
VF K DE+ ++ + G+ A +HGDK Q R +L +FK G +LIATDVA+RGL
Sbjct: 346 VFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIATDVASRGL 405
Query: 535 DIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELVNSLIAAG 594
D++ +K V+N+D + ++HRIGRT R+ K GTAYT T + +L++ L A
Sbjct: 406 DVEDVKFVINYDYPNSSEDYIHRIGRTARS-TKTGTAYTFFTPNNIKQVSDLISVLREAN 464
Query: 595 QNVSMELMDLAMKDGRFRS 613
Q ++ +L+ L G RS
Sbjct: 465 QAINPKLLQLVEDRGSGRS 483
>UNIPROTKB|A5A6J2 [details] [associations]
symbol:DDX5 "Probable ATP-dependent RNA helicase DDX5"
species:9598 "Pan troglodytes" [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=ISS]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=ISS] [GO:0003713 "transcription coactivator
activity" evidence=ISS] [GO:0003724 "RNA helicase activity"
evidence=ISS] [GO:0005730 "nucleolus" evidence=ISS] [GO:0030331
"estrogen receptor binding" evidence=ISS] [GO:0043517 "positive
regulation of DNA damage response, signal transduction by p53 class
mediator" evidence=ISS] [GO:0045667 "regulation of osteoblast
differentiation" evidence=ISS] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=ISS]
[GO:0050681 "androgen receptor binding" evidence=ISS] [GO:0060765
"regulation of androgen receptor signaling pathway" evidence=ISS]
[GO:0072332 "intrinsic apoptotic signaling pathway by p53 class
mediator" evidence=ISS] [GO:2001014 "regulation of skeletal muscle
cell differentiation" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012587
Pfam:PF00270 Pfam:PF00271 Pfam:PF08061 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0008380 GO:GO:0006397 GO:GO:0045944 GO:GO:0006351
GO:GO:0005681 GO:GO:0003723 GO:GO:0000122 GO:GO:0003713
GO:GO:0050681 GO:GO:0043517 GO:GO:0030331 GO:GO:0060765
GO:GO:0045667 GO:GO:0072332 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 GO:GO:0000381 eggNOG:COG0513
GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268804 KO:K12823 HOVERGEN:HBG015893 GO:GO:2001014
CTD:1655 OrthoDB:EOG4BVRTM EMBL:AB222120 RefSeq:NP_001138306.1
UniGene:Ptr.274 ProteinModelPortal:A5A6J2 PRIDE:A5A6J2
GeneID:455267 KEGG:ptr:455267 InParanoid:A5A6J2 NextBio:20836697
Uniprot:A5A6J2
Length = 614
Score = 908 (324.7 bits), Expect = 4.5e-91, P = 4.5e-91
Identities = 186/439 (42%), Positives = 278/439 (63%)
Query: 180 IDYEP-FNKDFYQDSASISGMSEQDVMEYKKSLAIRVSGFDVPRPVKTFEDCGFSTQLMH 238
+D P F K+FYQ+ ++ + Q+V Y++S I V G + P+PV F + F +M
Sbjct: 48 LDELPKFEKNFYQEHPDLARRTAQEVETYRRSKEITVRGHNCPKPVLNFYEANFPANVMD 107
Query: 239 AISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEG 298
I++Q + +PT+IQ Q P+ LSG D++G+A+TGSGKT +++LP IVHI QP L++ +G
Sbjct: 108 VIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDG 167
Query: 299 PIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGR 358
PI ++ APTRELA Q+ ++ ++ ++ + +YGG K Q ++L+ G E IATPGR
Sbjct: 168 PICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVENCIATPGR 227
Query: 359 LIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMPRKVE 418
LID L+ + R TYLVLDEADRM D+GFEPQIR IV QIRPDRQTL++SAT P++V
Sbjct: 228 LIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVR 287
Query: 419 KLAREILSDPVRVTVGEVGM-ANEDITQVV---HVIPSDAEKLPWLLEKLPGMIDDGDVL 474
+LA + L D + + +G + + AN +I Q+V H + D EKL L+E++ + +
Sbjct: 288 QLAEDFLKDYIHINIGALELSANHNILQIVDVCHDVEKD-EKLIRLMEEIMSE-KENKTI 345
Query: 475 VFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGL 534
VF K DE+ ++ + G+ A +HGDK Q R +L +FK G +LIATDVA+RGL
Sbjct: 346 VFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIATDVASRGL 405
Query: 535 DIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELVNSLIAAG 594
D++ +K V+N+D + ++HRIGRT R+ K GTAYT T + +L++ L A
Sbjct: 406 DVEDVKFVINYDYPNSSEDYIHRIGRTARS-TKTGTAYTFFTPNNIKQVSDLISVLREAN 464
Query: 595 QNVSMELMDLAMKDGRFRS 613
Q ++ +L+ L G RS
Sbjct: 465 QAINPKLLQLVEDRGSGRS 483
>UNIPROTKB|F1NM08 [details] [associations]
symbol:DDX5 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003712 "transcription cofactor activity" evidence=IEA]
[GO:0003724 "RNA helicase activity" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012587 Pfam:PF00270 Pfam:PF00271 Pfam:PF08061
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0003676 GO:GO:0003712 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 GO:GO:0003724
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00660000095174
EMBL:AADN02030017 IPI:IPI00680367 Ensembl:ENSGALT00000005586
ArrayExpress:F1NM08 Uniprot:F1NM08
Length = 595
Score = 901 (322.2 bits), Expect = 2.5e-90, P = 2.5e-90
Identities = 183/439 (41%), Positives = 278/439 (63%)
Query: 180 IDYEP-FNKDFYQDSASISGMSEQDVMEYKKSLAIRVSGFDVPRPVKTFEDCGFSTQLMH 238
+D P F K+FYQ+ + + Q+V +Y+ S + V G + P+P+ F + F +M
Sbjct: 36 LDELPKFEKNFYQEHPDVVRRTAQEVEQYRSSKEVTVRGHNCPKPIINFYEANFPANVME 95
Query: 239 AISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEG 298
I +Q + +PT+IQ Q P+ LSG D++G+A+TGSGKT +++LP IVHI QP L++ +G
Sbjct: 96 VIQRQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDG 155
Query: 299 PIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGR 358
PI ++ APTRELA Q+ +++++ ++ + +YGG K Q ++L+ G EI IATPGR
Sbjct: 156 PICLVLAPTRELAQQVQQVAAEYSRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGR 215
Query: 359 LIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMPRKVE 418
LID L+ + R TYLVLDEADRM D+GFEPQIR IV QIRPDRQTL++SAT P++V
Sbjct: 216 LIDFLEAGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVR 275
Query: 419 KLAREILSDPVRVTVGEVGM-ANEDITQVV---HVIPSDAEKLPWLLEKLPGMIDDGDVL 474
+LA + L + V + +G + + AN +I Q+V H + D +KL L+E++ + +
Sbjct: 276 QLAEDFLKEYVHINIGALELSANHNILQIVDVCHDVEKD-DKLIRLMEEIMSE-KENKTI 333
Query: 475 VFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGL 534
VF K D++ ++ + G+ A +HGDK Q R +L +FK G +LIATDVA+RGL
Sbjct: 334 VFVETKRRCDDLTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIATDVASRGL 393
Query: 535 DIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELVNSLIAAG 594
D++ +K V+N+D + ++HRIGRT R+ K GTAYT T + +L++ L A
Sbjct: 394 DVEDVKFVINYDYPNSSEDYIHRIGRTARS-TKTGTAYTFFTPNNIKQVNDLISVLREAN 452
Query: 595 QNVSMELMDLAMKDGRFRS 613
Q ++ +L+ L G RS
Sbjct: 453 QAINPKLLQLIEDRGSGRS 471
>UNIPROTKB|F1NXI3 [details] [associations]
symbol:DDX5 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003724 "RNA helicase activity" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0000122 "negative
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=IEA] [GO:0001701 "in utero embryonic
development" evidence=IEA] [GO:0003713 "transcription coactivator
activity" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0007623 "circadian rhythm" evidence=IEA] [GO:0030331 "estrogen
receptor binding" evidence=IEA] [GO:0033148 "positive regulation of
intracellular estrogen receptor signaling pathway" evidence=IEA]
[GO:0036002 "pre-mRNA binding" evidence=IEA] [GO:0043517 "positive
regulation of DNA damage response, signal transduction by p53 class
mediator" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0050681 "androgen receptor binding" evidence=IEA] [GO:0060765
"regulation of androgen receptor signaling pathway" evidence=IEA]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0072332 "intrinsic apoptotic signaling pathway by p53 class
mediator" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012587 Pfam:PF00270 Pfam:PF00271
Pfam:PF08061 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005730 GO:GO:0045944 GO:GO:0000122
GO:GO:0003713 GO:GO:0033148 GO:GO:0043517 GO:GO:0060765
GO:GO:0072332 GO:GO:0071013 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 GO:GO:0000381 GO:GO:0003724
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0036002 OMA:IDAMSGY
GeneTree:ENSGT00660000095174 EMBL:AADN02030017 IPI:IPI00598253
ProteinModelPortal:F1NXI3 Ensembl:ENSGALT00000034644
ArrayExpress:F1NXI3 Uniprot:F1NXI3
Length = 603
Score = 901 (322.2 bits), Expect = 2.5e-90, P = 2.5e-90
Identities = 183/439 (41%), Positives = 278/439 (63%)
Query: 180 IDYEP-FNKDFYQDSASISGMSEQDVMEYKKSLAIRVSGFDVPRPVKTFEDCGFSTQLMH 238
+D P F K+FYQ+ + + Q+V +Y+ S + V G + P+P+ F + F +M
Sbjct: 44 LDELPKFEKNFYQEHPDVVRRTAQEVEQYRSSKEVTVRGHNCPKPIINFYEANFPANVME 103
Query: 239 AISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEG 298
I +Q + +PT+IQ Q P+ LSG D++G+A+TGSGKT +++LP IVHI QP L++ +G
Sbjct: 104 VIQRQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDG 163
Query: 299 PIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGR 358
PI ++ APTRELA Q+ +++++ ++ + +YGG K Q ++L+ G EI IATPGR
Sbjct: 164 PICLVLAPTRELAQQVQQVAAEYSRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGR 223
Query: 359 LIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMPRKVE 418
LID L+ + R TYLVLDEADRM D+GFEPQIR IV QIRPDRQTL++SAT P++V
Sbjct: 224 LIDFLEAGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVR 283
Query: 419 KLAREILSDPVRVTVGEVGM-ANEDITQVV---HVIPSDAEKLPWLLEKLPGMIDDGDVL 474
+LA + L + V + +G + + AN +I Q+V H + D +KL L+E++ + +
Sbjct: 284 QLAEDFLKEYVHINIGALELSANHNILQIVDVCHDVEKD-DKLIRLMEEIMSE-KENKTI 341
Query: 475 VFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGL 534
VF K D++ ++ + G+ A +HGDK Q R +L +FK G +LIATDVA+RGL
Sbjct: 342 VFVETKRRCDDLTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIATDVASRGL 401
Query: 535 DIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELVNSLIAAG 594
D++ +K V+N+D + ++HRIGRT R+ K GTAYT T + +L++ L A
Sbjct: 402 DVEDVKFVINYDYPNSSEDYIHRIGRTARS-TKTGTAYTFFTPNNIKQVNDLISVLREAN 460
Query: 595 QNVSMELMDLAMKDGRFRS 613
Q ++ +L+ L G RS
Sbjct: 461 QAINPKLLQLIEDRGSGRS 479
>UNIPROTKB|H3BLZ8 [details] [associations]
symbol:DDX17 "Probable ATP-dependent RNA helicase DDX17"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0009791
"post-embryonic development" evidence=IEA] [GO:0072358
"cardiovascular system development" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 GO:GO:0009791
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 EMBL:Z97056 HGNC:HGNC:2740
ChiTaRS:DDX17 GO:GO:0072358 ProteinModelPortal:H3BLZ8 SMR:H3BLZ8
Ensembl:ENST00000396821 Bgee:H3BLZ8 Uniprot:H3BLZ8
Length = 731
Score = 900 (321.9 bits), Expect = 3.1e-90, P = 3.1e-90
Identities = 188/430 (43%), Positives = 273/430 (63%)
Query: 179 LIDYEPFNKDFYQDSASISGMSEQDVMEYKKSLAIRVSGFDV-PRPVKTFEDCGFSTQLM 237
L + F K+FY + ++ ++ +V E ++ I V G DV P+PV F F +M
Sbjct: 124 LSELPKFEKNFYVEHPEVARLTPYEVDELRRKKEITVRGGDVCPKPVFAFHHANFPQYVM 183
Query: 238 HAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEE 297
+ Q + +PT IQCQ P+ LSGRD++GIA+TGSGKT A++LP IVHI QP L++ +
Sbjct: 184 DVLMDQHFTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAYLLPAIVHINHQPYLERGD 243
Query: 298 GPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPG 357
GPI ++ APTRELA Q+ + K ++ + +YGG K Q ++L+ G EI IATPG
Sbjct: 244 GPICLVLAPTRELAQQVQQVADDYGKCSRLKSTCIYGGAPKGPQIRDLERGVEICIATPG 303
Query: 358 RLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMPRKV 417
RLID L+ + R TYLVLDEADRM D+GFEPQIR IV QIRPDRQTL++SAT P++V
Sbjct: 304 RLIDFLESGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEV 363
Query: 418 EKLAREILSDPVRVTVGEVGM-ANEDITQVVHV-IPSDAE-KLPWLLEKLPGMIDDGDVL 474
+LA + L D ++ VG + + AN +I Q+V V + S+ + KL L+E++ + +
Sbjct: 364 RQLAEDFLRDYTQINVGNLELSANHNILQIVDVCMESEKDHKLIQLMEEIMAE-KENKTI 422
Query: 475 VFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGL 534
+F K D++ ++ + G+ A +HGDK Q R +L +F+SG +LIATDVA+RGL
Sbjct: 423 IFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPILIATDVASRGL 482
Query: 535 DIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELVNSLIAAG 594
D++ +K V+N+D + +VHRIGRT R+ +K GTAYT T + A EL+ L A
Sbjct: 483 DVEDVKFVINYDYPNSSEDYVHRIGRTARSTNK-GTAYTFFTPGNLKQARELIKVLEEAN 541
Query: 595 QNVSMELMDL 604
Q ++ +LM L
Sbjct: 542 QAINPKLMQL 551
>UNIPROTKB|Q92841 [details] [associations]
symbol:DDX17 "Probable ATP-dependent RNA helicase DDX17"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0003713 "transcription coactivator activity" evidence=IDA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IDA] [GO:0033148 "positive
regulation of intracellular estrogen receptor signaling pathway"
evidence=IDA] [GO:0030331 "estrogen receptor binding" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:2001014 "regulation of
skeletal muscle cell differentiation" evidence=IMP] [GO:0005515
"protein binding" evidence=IPI] [GO:0003724 "RNA helicase activity"
evidence=TAS] [GO:0006396 "RNA processing" evidence=TAS]
[GO:0008186 "RNA-dependent ATPase activity" evidence=TAS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0005730
EMBL:CH471095 GO:GO:0045944 GO:GO:0006351 GO:GO:0003723
GO:GO:0006396 GO:GO:0003713 GO:GO:0033148 GO:GO:0030331
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268804 GO:GO:0008186 EMBL:U59321 EMBL:CR456432
EMBL:AL713763 EMBL:Z97056 EMBL:BC000595 IPI:IPI00651653
IPI:IPI00651677 IPI:IPI00889541 IPI:IPI01022339 PIR:S72367
RefSeq:NP_006377.2 UniGene:Hs.706116 UniGene:Hs.725500
ProteinModelPortal:Q92841 SMR:Q92841 DIP:DIP-29843N IntAct:Q92841
MINT:MINT-4545892 STRING:Q92841 PhosphoSite:Q92841 DMDM:3122595
REPRODUCTION-2DPAGE:IPI00023785 PaxDb:Q92841 PRIDE:Q92841
DNASU:10521 Ensembl:ENST00000403230 GeneID:10521 KEGG:hsa:10521
UCSC:uc003avx.4 CTD:10521 GeneCards:GC22M038879 HGNC:HGNC:2740
HPA:CAB024908 MIM:608469 neXtProt:NX_Q92841 PharmGKB:PA27206
HOVERGEN:HBG015893 InParanoid:Q92841 KO:K13178 ChiTaRS:DDX17
GenomeRNAi:10521 NextBio:39902 ArrayExpress:Q92841 Bgee:Q92841
CleanEx:HS_DDX17 Genevestigator:Q92841 GermOnline:ENSG00000100201
GO:GO:2001014 Uniprot:Q92841
Length = 729
Score = 900 (321.9 bits), Expect = 3.1e-90, P = 3.1e-90
Identities = 188/430 (43%), Positives = 273/430 (63%)
Query: 179 LIDYEPFNKDFYQDSASISGMSEQDVMEYKKSLAIRVSGFDV-PRPVKTFEDCGFSTQLM 237
L + F K+FY + ++ ++ +V E ++ I V G DV P+PV F F +M
Sbjct: 124 LSELPKFEKNFYVEHPEVARLTPYEVDELRRKKEITVRGGDVCPKPVFAFHHANFPQYVM 183
Query: 238 HAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEE 297
+ Q + +PT IQCQ P+ LSGRD++GIA+TGSGKT A++LP IVHI QP L++ +
Sbjct: 184 DVLMDQHFTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAYLLPAIVHINHQPYLERGD 243
Query: 298 GPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPG 357
GPI ++ APTRELA Q+ + K ++ + +YGG K Q ++L+ G EI IATPG
Sbjct: 244 GPICLVLAPTRELAQQVQQVADDYGKCSRLKSTCIYGGAPKGPQIRDLERGVEICIATPG 303
Query: 358 RLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMPRKV 417
RLID L+ + R TYLVLDEADRM D+GFEPQIR IV QIRPDRQTL++SAT P++V
Sbjct: 304 RLIDFLESGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEV 363
Query: 418 EKLAREILSDPVRVTVGEVGM-ANEDITQVVHV-IPSDAE-KLPWLLEKLPGMIDDGDVL 474
+LA + L D ++ VG + + AN +I Q+V V + S+ + KL L+E++ + +
Sbjct: 364 RQLAEDFLRDYTQINVGNLELSANHNILQIVDVCMESEKDHKLIQLMEEIMAE-KENKTI 422
Query: 475 VFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGL 534
+F K D++ ++ + G+ A +HGDK Q R +L +F+SG +LIATDVA+RGL
Sbjct: 423 IFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPILIATDVASRGL 482
Query: 535 DIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELVNSLIAAG 594
D++ +K V+N+D + +VHRIGRT R+ +K GTAYT T + A EL+ L A
Sbjct: 483 DVEDVKFVINYDYPNSSEDYVHRIGRTARSTNK-GTAYTFFTPGNLKQARELIKVLEEAN 541
Query: 595 QNVSMELMDL 604
Q ++ +LM L
Sbjct: 542 QAINPKLMQL 551
>MGI|MGI:1914290 [details] [associations]
symbol:Ddx17 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 17"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003713 "transcription coactivator activity" evidence=ISO]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISO] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0009791
"post-embryonic development" evidence=IMP] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0030331 "estrogen receptor binding"
evidence=ISO] [GO:0033148 "positive regulation of intracellular
estrogen receptor signaling pathway" evidence=ISO] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=ISO] [GO:0072358 "cardiovascular system
development" evidence=IMP] [GO:2001014 "regulation of skeletal
muscle cell differentiation" evidence=ISO] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 MGI:MGI:1914290
GO:GO:0005524 GO:GO:0005634 GO:GO:0005730 GO:GO:0045944
GO:GO:0006351 GO:GO:0003723 GO:GO:0003713 GO:GO:0009791
GO:GO:0033148 GO:GO:0030331 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 CTD:10521 HOVERGEN:HBG015893 KO:K13178
ChiTaRS:DDX17 GO:GO:2001014 EMBL:AK039888 EMBL:BC062910
EMBL:BC096036 IPI:IPI00396797 IPI:IPI00405364 RefSeq:NP_001035277.1
RefSeq:NP_951061.1 RefSeq:NP_951062.1 UniGene:Mm.29644
UniGene:Mm.298199 ProteinModelPortal:Q501J6 SMR:Q501J6
IntAct:Q501J6 STRING:Q501J6 PhosphoSite:Q501J6
REPRODUCTION-2DPAGE:IPI00405364 PaxDb:Q501J6 PRIDE:Q501J6
GeneID:67040 KEGG:mmu:67040 UCSC:uc007wtq.1 UCSC:uc007wtt.1
InParanoid:Q501J6 OrthoDB:EOG4QRH3N NextBio:323386 Bgee:Q501J6
CleanEx:MM_DDX17 Genevestigator:Q501J6
GermOnline:ENSMUSG00000055065 GO:GO:0072358 Uniprot:Q501J6
Length = 650
Score = 900 (321.9 bits), Expect = 3.1e-90, P = 3.1e-90
Identities = 188/430 (43%), Positives = 273/430 (63%)
Query: 179 LIDYEPFNKDFYQDSASISGMSEQDVMEYKKSLAIRVSGFDV-PRPVKTFEDCGFSTQLM 237
L + F K+FY + ++ ++ +V E ++ I V G DV P+PV F F +M
Sbjct: 45 LSELPKFEKNFYVEHPEVARLTPYEVDELRRKKEITVRGGDVCPKPVFAFHHANFPQYVM 104
Query: 238 HAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEE 297
+ Q + +PT IQCQ P+ LSGRD++GIA+TGSGKT A++LP IVHI QP L++ +
Sbjct: 105 DVLMDQHFTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAYLLPAIVHINHQPYLERGD 164
Query: 298 GPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPG 357
GPI ++ APTRELA Q+ + K ++ + +YGG K Q ++L+ G EI IATPG
Sbjct: 165 GPICLVLAPTRELAQQVQQVADDYGKCSRLKSTCIYGGAPKGPQIRDLERGVEICIATPG 224
Query: 358 RLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMPRKV 417
RLID L+ + R TYLVLDEADRM D+GFEPQIR IV QIRPDRQTL++SAT P++V
Sbjct: 225 RLIDFLESGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEV 284
Query: 418 EKLAREILSDPVRVTVGEVGM-ANEDITQVVHV-IPSDAE-KLPWLLEKLPGMIDDGDVL 474
+LA + L D ++ VG + + AN +I Q+V V + S+ + KL L+E++ + +
Sbjct: 285 RQLAEDFLRDYTQINVGNLELSANHNILQIVDVCMESEKDHKLIQLMEEIMAE-KENKTI 343
Query: 475 VFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGL 534
+F K D++ ++ + G+ A +HGDK Q R +L +F+SG +LIATDVA+RGL
Sbjct: 344 IFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPILIATDVASRGL 403
Query: 535 DIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELVNSLIAAG 594
D++ +K V+N+D + +VHRIGRT R+ +K GTAYT T + A EL+ L A
Sbjct: 404 DVEDVKFVINYDYPNSSEDYVHRIGRTARSTNK-GTAYTFFTPGNLKQARELIKVLEEAN 462
Query: 595 QNVSMELMDL 604
Q ++ +LM L
Sbjct: 463 QAINPKLMQL 472
>WB|WBGene00010260 [details] [associations]
symbol:F58E10.3 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0040010 "positive regulation of
growth rate" evidence=IMP] [GO:0040007 "growth" evidence=IMP]
[GO:0002119 "nematode larval development" evidence=IMP]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0009792 GO:GO:0040007
GO:GO:0040010 GO:GO:0002119 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268804 KO:K12823
GeneTree:ENSGT00660000095174 HSSP:P10081 EMBL:Z81555 PIR:T22917
RefSeq:NP_001041134.1 ProteinModelPortal:Q9XUW5 SMR:Q9XUW5
STRING:Q9XUW5 PaxDb:Q9XUW5 PRIDE:Q9XUW5 EnsemblMetazoa:F58E10.3a.1
EnsemblMetazoa:F58E10.3a.2 EnsemblMetazoa:F58E10.3a.3
EnsemblMetazoa:F58E10.3a.4 EnsemblMetazoa:F58E10.3a.5 GeneID:179897
KEGG:cel:CELE_F58E10.3 UCSC:F58E10.3a.1 CTD:179897
WormBase:F58E10.3a InParanoid:Q9XUW5 OMA:YVLQEIT NextBio:907314
ArrayExpress:Q9XUW5 Uniprot:Q9XUW5
Length = 561
Score = 896 (320.5 bits), Expect = 8.3e-90, P = 8.3e-90
Identities = 188/434 (43%), Positives = 274/434 (63%)
Query: 175 LDHSLIDYEPFNKDFYQDSASISGMSEQDVMEYKKSLAIRVSGFDVPRPVKTFEDCGFST 234
+D S + P KDFY ++A++S + ++ ++ + + + G VPRPV F +
Sbjct: 80 VDWSAENLTPIEKDFYHENAAVSRREQYEIDQWVSANQVTLEGRGVPRPVFEFNEAPLPG 139
Query: 235 QLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQ 294
Q+ H + ++KPT IQ + PI +SGRDII IAKTGSGKT AF+LP +VHI Q Q
Sbjct: 140 QI-HELLYGKFQKPTVIQSISWPIAMSGRDIISIAKTGSGKTLAFMLPALVHITKQAHRQ 198
Query: 295 KEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIA 354
+ EGP ++ PTRELA Q+ + F S G++++ ++GG SK Q ++L+ G +IV+A
Sbjct: 199 RGEGPAVLVLLPTRELAQQVQEVSIDFCHSLGLKMTCLFGGASKGPQARDLERGVDIVVA 258
Query: 355 TPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMP 414
TPGRL+D L M + +YLVLDEADRM D+GFEPQI+ I+GQIRPDRQTL+FSAT P
Sbjct: 259 TPGRLLDFLDNGTTNMKKCSYLVLDEADRMLDMGFEPQIKKIIGQIRPDRQTLMFSATWP 318
Query: 415 RKVEKLAREILSDPVRVTVGEVGMA-NEDITQVVHVIPSDAEKLPWLLEKLPGMIDDGD- 472
++V LA + D + VG + +A N +ITQVV ++ A++ L+E L +++ +
Sbjct: 319 KEVRALASDFQKDAAFLNVGSLELAANHNITQVVDILEEHAKQAK-LMELLNHIMNQKEC 377
Query: 473 -VLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAA 531
++F K DE+ + + G+ +HGDK+Q R +LQ+FK+G +++ATDVAA
Sbjct: 378 KTIIFVETKRKADELTRAMRRDGWPTLCIHGDKNQGERDWVLQEFKAGKTPIMLATDVAA 437
Query: 532 RGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELVNSLI 591
RGLD+ IK V+N+D + + +VHRIGRTGR+ DK GTAYT T A A +L+ L
Sbjct: 438 RGLDVDDIKFVINYDYPNNSEDYVHRIGRTGRS-DKKGTAYTFFTHTNASKAKDLLKVLD 496
Query: 592 AAGQNVSMELMDLA 605
A Q V L D+A
Sbjct: 497 EAKQTVPQALRDMA 510
>GENEDB_PFALCIPARUM|PF14_0437 [details] [associations]
symbol:PF14_0437 "helicase, truncated,
putative" species:5833 "Plasmodium falciparum" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
EMBL:AE014187 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
RefSeq:XP_001348611.2 ProteinModelPortal:Q8IL13 IntAct:Q8IL13
MINT:MINT-1661155 PRIDE:Q8IL13 EnsemblProtists:PF14_0437:mRNA
GeneID:812019 KEGG:pfa:PF14_0437 EuPathDB:PlasmoDB:PF3D7_1445900
HOGENOM:HOG000199241 ProtClustDB:PTZ00110 Uniprot:Q8IL13
Length = 527
Score = 890 (318.4 bits), Expect = 3.6e-89, P = 3.6e-89
Identities = 196/447 (43%), Positives = 275/447 (61%)
Query: 167 KKIEPIPALDHSLIDYEPFNKDFYQDSASISGMSEQDVMEYKKSLAIRV-SGFDVPRPVK 225
K + PI D I+ PF K+FY++ IS +S ++V E + I + G +VP+PV
Sbjct: 57 KNLAPI---DWKTINLVPFEKNFYKEHEDISKLSTKEVKEIRDKHKITILEGENVPKPVV 113
Query: 226 TFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIV 285
+ GF ++ ++ PT IQ Q PI LSG+D+IG A+TGSGKT AF+LP V
Sbjct: 114 SINKIGFPDYVIKSLKNNNIVAPTPIQIQGWPIALSGKDMIGKAETGSGKTLAFILPAFV 173
Query: 286 HIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKEL 345
HI+ QP L+ +GPI ++ APTRELA QI E KF+ IR + YGG+ K Q L
Sbjct: 174 HILAQPNLKYGDGPIVLVLAPTRELAEQIRQECIKFSTESKIRNTCAYGGVPKSGQIYAL 233
Query: 346 KAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQ 405
K G I+IA PGRLID+L+ + RVTYLVLDEAD+M D+GFE QIR IV QIRPDRQ
Sbjct: 234 KQGVHILIACPGRLIDLLEQNVTNLMRVTYLVLDEADKMLDMGFELQIRKIVDQIRPDRQ 293
Query: 406 TLLFSATMPRKVEKLAREILSD-PVRVTVGEVGM-ANEDITQVVHVIPSDAEKLPWLLEK 463
TL++SAT P++V+ LA+++ + P++V VG + + A I Q ++++ + EK+ L
Sbjct: 294 TLMWSATWPKEVQALAKDLCKEQPIQVNVGSLTLTACRSIKQEIYLL-EEHEKIGNLKSL 352
Query: 464 LPGMIDDGD-VLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYH 522
L + D D ++VF K D I L G A +HGDK Q R +L +FK+G
Sbjct: 353 LQRIFKDNDRIIVFVETKKNADFITKALRLDGMPALCIHGDKKQEERRWVLNEFKTGKSP 412
Query: 523 VLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARF 582
++IATDVA+RGLDIK++K V+NFD ++ +VHRIGRTGRAG G ++T +T + R
Sbjct: 413 IMIATDVASRGLDIKNVKYVINFDFPNQIEDYVHRIGRTGRAGSH-GASFTFLTADKYRL 471
Query: 583 AGELVNSLIAAGQNVSMELMDLAMKDG 609
A +LV L + Q V +L ++ G
Sbjct: 472 AKDLVKILRESEQPVPPQLEKISYSMG 498
>UNIPROTKB|Q8IL13 [details] [associations]
symbol:PF14_0437 "Helicase, putative" species:36329
"Plasmodium falciparum 3D7" [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:AE014187
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 RefSeq:XP_001348611.2
ProteinModelPortal:Q8IL13 IntAct:Q8IL13 MINT:MINT-1661155
PRIDE:Q8IL13 EnsemblProtists:PF14_0437:mRNA GeneID:812019
KEGG:pfa:PF14_0437 EuPathDB:PlasmoDB:PF3D7_1445900
HOGENOM:HOG000199241 ProtClustDB:PTZ00110 Uniprot:Q8IL13
Length = 527
Score = 890 (318.4 bits), Expect = 3.6e-89, P = 3.6e-89
Identities = 196/447 (43%), Positives = 275/447 (61%)
Query: 167 KKIEPIPALDHSLIDYEPFNKDFYQDSASISGMSEQDVMEYKKSLAIRV-SGFDVPRPVK 225
K + PI D I+ PF K+FY++ IS +S ++V E + I + G +VP+PV
Sbjct: 57 KNLAPI---DWKTINLVPFEKNFYKEHEDISKLSTKEVKEIRDKHKITILEGENVPKPVV 113
Query: 226 TFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIV 285
+ GF ++ ++ PT IQ Q PI LSG+D+IG A+TGSGKT AF+LP V
Sbjct: 114 SINKIGFPDYVIKSLKNNNIVAPTPIQIQGWPIALSGKDMIGKAETGSGKTLAFILPAFV 173
Query: 286 HIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKEL 345
HI+ QP L+ +GPI ++ APTRELA QI E KF+ IR + YGG+ K Q L
Sbjct: 174 HILAQPNLKYGDGPIVLVLAPTRELAEQIRQECIKFSTESKIRNTCAYGGVPKSGQIYAL 233
Query: 346 KAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQ 405
K G I+IA PGRLID+L+ + RVTYLVLDEAD+M D+GFE QIR IV QIRPDRQ
Sbjct: 234 KQGVHILIACPGRLIDLLEQNVTNLMRVTYLVLDEADKMLDMGFELQIRKIVDQIRPDRQ 293
Query: 406 TLLFSATMPRKVEKLAREILSD-PVRVTVGEVGM-ANEDITQVVHVIPSDAEKLPWLLEK 463
TL++SAT P++V+ LA+++ + P++V VG + + A I Q ++++ + EK+ L
Sbjct: 294 TLMWSATWPKEVQALAKDLCKEQPIQVNVGSLTLTACRSIKQEIYLL-EEHEKIGNLKSL 352
Query: 464 LPGMIDDGD-VLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYH 522
L + D D ++VF K D I L G A +HGDK Q R +L +FK+G
Sbjct: 353 LQRIFKDNDRIIVFVETKKNADFITKALRLDGMPALCIHGDKKQEERRWVLNEFKTGKSP 412
Query: 523 VLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARF 582
++IATDVA+RGLDIK++K V+NFD ++ +VHRIGRTGRAG G ++T +T + R
Sbjct: 413 IMIATDVASRGLDIKNVKYVINFDFPNQIEDYVHRIGRTGRAGSH-GASFTFLTADKYRL 471
Query: 583 AGELVNSLIAAGQNVSMELMDLAMKDG 609
A +LV L + Q V +L ++ G
Sbjct: 472 AKDLVKILRESEQPVPPQLEKISYSMG 498
>UNIPROTKB|C9JMU5 [details] [associations]
symbol:DDX17 "Probable ATP-dependent RNA helicase DDX17"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268804 EMBL:Z97056 IPI:IPI01022339
HGNC:HGNC:2740 ChiTaRS:DDX17 ProteinModelPortal:C9JMU5 SMR:C9JMU5
STRING:C9JMU5 PRIDE:C9JMU5 Ensembl:ENST00000381633
ArrayExpress:C9JMU5 Bgee:C9JMU5 Uniprot:C9JMU5
Length = 652
Score = 889 (318.0 bits), Expect = 4.6e-89, P = 4.6e-89
Identities = 188/432 (43%), Positives = 273/432 (63%)
Query: 179 LIDYEPFNKDFYQDSASISGMSEQDVMEYKKSLAIRVSGFDV-PRPVKTFEDCGFSTQLM 237
L + F K+FY + ++ ++ +V E ++ I V G DV P+PV F F +M
Sbjct: 45 LSELPKFEKNFYVEHPEVARLTPYEVDELRRKKEITVRGGDVCPKPVFAFHHANFPQYVM 104
Query: 238 HAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEE 297
+ Q + +PT IQCQ P+ LSGRD++GIA+TGSGKT A++LP IVHI QP L++ +
Sbjct: 105 DVLMDQHFTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAYLLPAIVHINHQPYLERGD 164
Query: 298 GPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPG 357
GPI ++ APTRELA Q+ + K ++ + +YGG K Q ++L+ G EI IATPG
Sbjct: 165 GPICLVLAPTRELAQQVQQVADDYGKCSRLKSTCIYGGAPKGPQIRDLERGVEICIATPG 224
Query: 358 RLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMPRKV 417
RLID L+ + R TYLVLDEADRM D+GFEPQIR IV QIRPDRQTL++SAT P++V
Sbjct: 225 RLIDFLESGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEV 284
Query: 418 EKLAREILSDPVRVTVGEVGM-ANEDITQVVHV-IPSDAE-KLPWLLEKLPGMIDDGDVL 474
+LA + L D ++ VG + + AN +I Q+V V + S+ + KL L+E++ + +
Sbjct: 285 RQLAEDFLRDYTQINVGNLELSANHNILQIVDVCMESEKDHKLIQLMEEIMAE-KENKTI 343
Query: 475 VFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGL 534
+F K D++ ++ + G+ A +HGDK Q R +L +F+SG +LIATDVA+RGL
Sbjct: 344 IFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPILIATDVASRGL 403
Query: 535 --DIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELVNSLIA 592
D++ +K V+N+D + +VHRIGRT R+ +K GTAYT T + A EL+ L
Sbjct: 404 GFDVEDVKFVINYDYPNSSEDYVHRIGRTARSTNK-GTAYTFFTPGNLKQARELIKVLEE 462
Query: 593 AGQNVSMELMDL 604
A Q ++ +LM L
Sbjct: 463 ANQAINPKLMQL 474
>TAIR|locus:2222617 [details] [associations]
symbol:AT5G14610 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0009664
"plant-type cell wall organization" evidence=RCA] [GO:0042545 "cell
wall modification" evidence=RCA] InterPro:IPR000629
InterPro:IPR001202 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 Pfam:PF00397 PROSITE:PS00039
PROSITE:PS01159 PROSITE:PS50020 PROSITE:PS51194 SMART:SM00456
SMART:SM00490 GO:GO:0005524 EMBL:CP002688 GO:GO:0003676
Gene3D:2.20.70.10 SUPFAM:SSF51045 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
KO:K12823 IPI:IPI00992350 RefSeq:NP_196965.2 UniGene:At.43560
ProteinModelPortal:F4K6V1 SMR:F4K6V1 PRIDE:F4K6V1
EnsemblPlants:AT5G14610.1 GeneID:831313 KEGG:ath:AT5G14610
OMA:YLIPGFM Uniprot:F4K6V1
Length = 712
Score = 798 (286.0 bits), Expect = 4.6e-89, Sum P(4) = 4.6e-89
Identities = 165/368 (44%), Positives = 241/368 (65%)
Query: 244 GYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVI 303
G+ P+ IQ Q+ PI + RDI+ IAKTGSGKT +++P +H+ + GP ++
Sbjct: 248 GFSAPSPIQAQSWPIAMQNRDIVAIAKTGSGKTLGYLIPGFMHLQ-RIHNDSRMGPTILV 306
Query: 304 CAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDML 363
+PTRELA QI +E KF KS I + +YGG K Q KE++ G +IV+ATPGRL D+L
Sbjct: 307 LSPTRELATQIQVEALKFGKSSKISCACLYGGAPKGPQLKEIERGVDIVVATPGRLNDIL 366
Query: 364 KMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLARE 423
+MK +++ +V+YLVLDEADRM D+GFEPQIR IV ++ RQTL+++AT P++V K+A +
Sbjct: 367 EMKRISLHQVSYLVLDEADRMLDMGFEPQIRKIVNEVPTKRQTLMYTATWPKEVRKIAAD 426
Query: 424 ILSDPVRVTVGEVG--MANEDITQVVHVIPSDAEKLPWLLEKLPGMIDDGDVLVFASKKT 481
+L +P +V +G V +AN+ ITQ + V+ + EK L + L +++F S K
Sbjct: 427 LLVNPAQVNIGNVDELVANKSITQTIEVL-APMEKHSRLEQILRSQEPGSKIIIFCSTKR 485
Query: 482 TVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKS 541
D++ L + F AAA+HGDK QA R ++L +F+SG VL+ATDVAARGLD+K I+
Sbjct: 486 MCDQLARNLTRT-FGAAAIHGDKSQAERDDVLNQFRSGRTPVLVATDVAARGLDVKDIRV 544
Query: 542 VVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELVNSLIAAGQNVSMEL 601
VVN+D ++ +VHRIGRTGRAG G AYT ++A+ A +L+ L A Q V ++
Sbjct: 545 VVNYDFPNGVEDYVHRIGRTGRAG-ATGLAYTFFGDQDAKHASDLIKILEGANQKVPPQV 603
Query: 602 MDLAMKDG 609
++A + G
Sbjct: 604 REMATRGG 611
Score = 55 (24.4 bits), Expect = 4.6e-89, Sum P(4) = 4.6e-89
Identities = 15/44 (34%), Positives = 23/44 (52%)
Query: 194 ASISGMSEQDVMEYKKSLAIRVSGFDVPRPVKTFEDCGFSTQLM 237
+S +G +E Y + I VSG VP P+ +FE G +L+
Sbjct: 131 SSAAG-NELSPEAYCRKHEITVSGGQVPPPLMSFEATGLPNELL 173
Score = 40 (19.1 bits), Expect = 4.6e-89, Sum P(4) = 4.6e-89
Identities = 12/47 (25%), Positives = 19/47 (40%)
Query: 17 TSYSFEQSQAPQRLYVPPSSRYSHDNYEDTDLDNIDYEDNDAAKAAN 63
T Y S AP +L P S N + + N ED+ + ++
Sbjct: 42 TQYERPASSAPPKLAAIPVSSSVQTNQQSSSGFNSGKEDDKYGRGSD 88
Score = 38 (18.4 bits), Expect = 4.6e-89, Sum P(4) = 4.6e-89
Identities = 23/88 (26%), Positives = 36/88 (40%)
Query: 654 SSQSVPSRSAAVNSLKTGMMTQFRSNFVAASSNTPSEGFNNSASAYANKRPALRGFVSGG 713
++Q VP + + + G M +FR TPS G Y + G+ GG
Sbjct: 595 ANQKVPPQVREMATRGGGGMNKFRR------WGTPSSGGGGGRGGYGDS-----GY--GG 641
Query: 714 SIGGDVNGTQTTGLTGFVSGGSIGGEMS 741
G+ +G + G +G+ G GG S
Sbjct: 642 R--GE-SGYGSRGDSGYGGRGDSGGRGS 666
>SGD|S000000441 [details] [associations]
symbol:PRP5 "RNA helicase in the DEAD-box family"
species:4932 "Saccharomyces cerevisiae" [GO:0005634 "nucleus"
evidence=IEA;IDA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0000348 "mRNA branch
site recognition" evidence=TAS] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0008186 "RNA-dependent ATPase activity"
evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 SGD:S000000441 GO:GO:0005524
GO:GO:0005681 EMBL:BK006936 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0008186
GeneTree:ENSGT00610000086076 KO:K12811 HOGENOM:HOG000007229
GO:GO:0000348 OMA:SLVIIYN OrthoDB:EOG40CMR1 EMBL:M33191 EMBL:Z36106
EMBL:AY692817 PIR:A35791 RefSeq:NP_009796.1
ProteinModelPortal:P21372 SMR:P21372 DIP:DIP-88N IntAct:P21372
MINT:MINT-403988 STRING:P21372 PaxDb:P21372 EnsemblFungi:YBR237W
GeneID:852539 KEGG:sce:YBR237W CYGD:YBR237w NextBio:971604
Genevestigator:P21372 GermOnline:YBR237W Uniprot:P21372
Length = 849
Score = 667 (239.9 bits), Expect = 1.7e-84, Sum P(3) = 1.7e-84
Identities = 147/367 (40%), Positives = 221/367 (60%)
Query: 106 DDEEDPMESFLMAKKDVGLTLAADALRAG--YDSDEEVYAAAKAVDAGMLDYDSDDNPVV 163
D+E+DP++ F+ + K+ ++ + G D +++++ D + D + N
Sbjct: 132 DNEKDPLDEFMTSLKEEKMSNSKGMYDRGDILDVEDQLFELGGTDDEDVEDNTDNSNIAK 191
Query: 164 VEKKKIEP-IPALDHSLIDYEPFNKDFYQDSASISGMSEQDVMEYKKSLA-IRVSGFDVP 221
+ K K + + + +S + EPF K+FY +S ++S MSE +V E + SL I++ G P
Sbjct: 192 IAKLKAKKRVKQIYYSPEELEPFQKNFYIESETVSSMSEMEVEELRLSLDNIKIKGTGCP 251
Query: 222 RPVKTFEDCGFSTQLMHAIS-KQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFV 280
+PV + G ST M I+ K + T IQ QALP I+SGRD+IGI+KTGSGKT +++
Sbjct: 252 KPVTKWSQLGLSTDTMVLITEKLHFGSLTPIQSQALPAIMSGRDVIGISKTGSGKTISYL 311
Query: 281 LPMIVHIMDQPELQKEE-GPIGVICAPTRELAHQIYLETKKFAKSH-GIRVSAVYGGMSK 338
LP++ + Q L K E GP+G+I APTRELA QI+ E KF ++ IR GG
Sbjct: 312 LPLLRQVKAQRPLSKHETGPMGLILAPTRELALQIHEEVTKFTEADTSIRSVCCTGGSEM 371
Query: 339 LDQFKELKAGCEIVIATPGRLIDMLKM---KALTMSRVTYLVLDEADRMFDLGFEPQIRS 395
Q +LK G EIV+ATPGR ID+L + K L+ R+T++V+DEADR+FDLGFEPQI
Sbjct: 372 KKQITDLKRGTEIVVATPGRFIDILTLNDGKLLSTKRITFVVMDEADRLFDLGFEPQITQ 431
Query: 396 IVGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAE 455
I+ +RPD+Q +LFSAT P K+ A +L P+ +T+ GM NE++ Q + S+ E
Sbjct: 432 IMKTVRPDKQCVLFSATFPNKLRSFAVRVLHSPISITINSKGMVNENVKQKFRICHSEDE 491
Query: 456 KLPWLLE 462
K L++
Sbjct: 492 KFDNLVQ 498
Score = 168 (64.2 bits), Expect = 1.7e-84, Sum P(3) = 1.7e-84
Identities = 35/110 (31%), Positives = 56/110 (50%)
Query: 470 DGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDV 529
D ++F S + D I +L G A+H K R+ L+KFK +L+ T+V
Sbjct: 525 DAKAIIFVSSQNICDFISKKLLNAGIVTCAIHAGKPYQERLMNLEKFKREKNSILLCTEV 584
Query: 530 AARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKE 579
+RGL++ + V+ ++ + +VH GRT R G + GTA TL+ E
Sbjct: 585 LSRGLNVPEVSLVIIYNAVKTFAQYVHTTGRTAR-GSRSGTAITLLLHDE 633
Score = 43 (20.2 bits), Expect = 1.7e-84, Sum P(3) = 1.7e-84
Identities = 19/77 (24%), Positives = 33/77 (42%)
Query: 15 RQTSYSFEQSQAPQRLYVPPSSRYSHDNYEDTDLDNIDYEDNDAA------KAANDTGNG 68
R+ F +S P + V PS + S + + + D+ D+D + ++
Sbjct: 72 RKRKNEFRKSDEP--VSVKPSKKKSKRSKVKKKI-SFDFSDDDDSEIGVSFRSKEHIQKA 128
Query: 69 AEKE-EIDPLDAFMEGI 84
E + E DPLD FM +
Sbjct: 129 PEHDNEKDPLDEFMTSL 145
>TAIR|locus:2084178 [details] [associations]
symbol:DRH1 "DEAD box RNA helicase 1" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IDA] [GO:0016887 "ATPase activity" evidence=IDA]
InterPro:IPR000629 InterPro:IPR001202 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 Pfam:PF00397
PROSITE:PS00039 PROSITE:PS01159 PROSITE:PS50020 PROSITE:PS51194
SMART:SM00456 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000184 GO:GO:0003723
EMBL:AC009325 SUPFAM:SSF51045 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006364 GO:GO:0004004 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268804 KO:K12823
EMBL:AB010259 EMBL:AY062591 EMBL:AF428313 EMBL:AY050375
EMBL:BT000795 EMBL:BT009670 IPI:IPI00544638 IPI:IPI00545196
PIR:T52137 RefSeq:NP_001030619.1 RefSeq:NP_566141.1
RefSeq:NP_850492.1 RefSeq:NP_974206.1 UniGene:At.22096
ProteinModelPortal:Q8H136 SMR:Q8H136 IntAct:Q8H136 STRING:Q8H136
PaxDb:Q8H136 PRIDE:Q8H136 EnsemblPlants:AT3G01540.2
EnsemblPlants:AT3G01540.3 EnsemblPlants:AT3G01540.4 GeneID:821116
KEGG:ath:AT3G01540 GeneFarm:931 TAIR:At3g01540 InParanoid:Q8H136
OMA:DPSTEAY PhylomeDB:Q8H136 ProtClustDB:CLSN2687967
Genevestigator:Q8H136 GermOnline:AT3G01540 Uniprot:Q8H136
Length = 619
Score = 843 (301.8 bits), Expect = 3.4e-84, P = 3.4e-84
Identities = 177/412 (42%), Positives = 261/412 (63%)
Query: 200 SEQDVMEYKKSLAIRVSGFDVPRPVKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPII 259
SE Y + I VSG VP P+ +FE GF +L+ + G+ PT IQ Q+ PI
Sbjct: 133 SELSPEAYSRRHEITVSGGQVPPPLMSFEATGFPPELLREVLSAGFSAPTPIQAQSWPIA 192
Query: 260 LSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETK 319
+ GRDI+ IAKTGSGKT +++P +H+ + GP ++ +PTRELA QI E
Sbjct: 193 MQGRDIVAIAKTGSGKTLGYLIPGFLHLQ-RIRNDSRMGPTILVLSPTRELATQIQEEAV 251
Query: 320 KFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLD 379
KF +S I + +YGG K Q ++L+ G +IV+ATPGRL D+L+M+ +++ +++YLVLD
Sbjct: 252 KFGRSSRISCTCLYGGAPKGPQLRDLERGADIVVATPGRLNDILEMRRISLRQISYLVLD 311
Query: 380 EADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVG-- 437
EADRM D+GFEPQIR IV +I RQTL+++AT P+ V K+A ++L +P +V +G V
Sbjct: 312 EADRMLDMGFEPQIRKIVKEIPTKRQTLMYTATWPKGVRKIAADLLVNPAQVNIGNVDEL 371
Query: 438 MANEDITQVVHVIPSDAEKLPWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKA 497
+AN+ ITQ + V+ + EK L + L V++F S K D++ L ++ F A
Sbjct: 372 VANKSITQHIEVV-APMEKQRRLEQILRSQEPGSKVIIFCSTKRMCDQLTRNLTRQ-FGA 429
Query: 498 AALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHR 557
AA+HGDK Q R +L +F+SG VL+ATDVAARGLD+K I++VVN+D ++ +VHR
Sbjct: 430 AAIHGDKSQPERDNVLNQFRSGRTPVLVATDVAARGLDVKDIRAVVNYDFPNGVEDYVHR 489
Query: 558 IGRTGRAGDKDGTAYTLVTQKEARFAGELVNSLIAAGQNVSMELMDLAMKDG 609
IGRTGRAG G A+T ++++ A +L+ L A Q V ++ ++A + G
Sbjct: 490 IGRTGRAG-ATGQAFTFFGDQDSKHASDLIKILEGANQRVPPQIREMATRGG 540
>TAIR|locus:2081061 [details] [associations]
symbol:AT3G06480 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0005773
"vacuole" evidence=IDA] [GO:0006635 "fatty acid beta-oxidation"
evidence=RCA] [GO:0016558 "protein import into peroxisome matrix"
evidence=RCA] InterPro:IPR000629 InterPro:IPR001202
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
Pfam:PF00397 PROSITE:PS00039 PROSITE:PS01159 PROSITE:PS50020
PROSITE:PS51194 SMART:SM00456 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0005773 EMBL:CP002686 GenomeReviews:BA000014_GR
GO:GO:0000184 GO:GO:0003723 EMBL:AC011623 Gene3D:2.20.70.10
SUPFAM:SSF51045 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K12823 IPI:IPI00528334 RefSeq:NP_187299.1
UniGene:At.27592 ProteinModelPortal:Q9SQV1 SMR:Q9SQV1 PaxDb:Q9SQV1
PRIDE:Q9SQV1 EnsemblPlants:AT3G06480.1 GeneID:819825
KEGG:ath:AT3G06480 GeneFarm:1016 TAIR:At3g06480
HOGENOM:HOG000154116 InParanoid:Q9SQV1 OMA:GMRENSF PhylomeDB:Q9SQV1
ProtClustDB:CLSN2915418 Genevestigator:Q9SQV1 GermOnline:AT3G06480
Uniprot:Q9SQV1
Length = 1088
Score = 841 (301.1 bits), Expect = 5.6e-84, P = 5.6e-84
Identities = 179/405 (44%), Positives = 252/405 (62%)
Query: 207 YKKSLAIRVSGFDVPRPVKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDII 266
Y+K + +G ++P P TFE G +++ + G+ PT IQ Q PI L RDI+
Sbjct: 417 YRKQHEVTTTGENIPAPYITFESSGLPPEILRELLSAGFPSPTPIQAQTWPIALQSRDIV 476
Query: 267 GIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHG 326
IAKTGSGKT +++P + ++ GP +I APTRELA QI E +F +S
Sbjct: 477 AIAKTGSGKTLGYLIPAFI-LLRHCRNDSRNGPTVLILAPTRELATQIQDEALRFGRSSR 535
Query: 327 IRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFD 386
I + +YGG K Q KEL+ G +IV+ATPGRL D+L+MK + +V+ LVLDEADRM D
Sbjct: 536 ISCTCLYGGAPKGPQLKELERGADIVVATPGRLNDILEMKMIDFQQVSLLVLDEADRMLD 595
Query: 387 LGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVG--MANEDIT 444
+GFEPQIR IV +I P RQTL+++AT P++V K+A ++L +PV+V +G V AN+ IT
Sbjct: 596 MGFEPQIRKIVNEIPPRRQTLMYTATWPKEVRKIASDLLVNPVQVNIGRVDELAANKAIT 655
Query: 445 QVVHVIPSDAEKLPWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDK 504
Q V V+P EK L + L V++F S K D + + + F A +HGDK
Sbjct: 656 QYVEVVPQ-MEKERRLEQILRSQERGSKVIIFCSTKRLCDHLARSVGRH-FGAVVIHGDK 713
Query: 505 DQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRA 564
Q R +L +F+SG VLIATDVAARGLDIK I+ V+N+D ++ +VHRIGRTGRA
Sbjct: 714 TQGERDWVLNQFRSGKSCVLIATDVAARGLDIKDIRVVINYDFPTGVEDYVHRIGRTGRA 773
Query: 565 GDKDGTAYTLVTQKEARFAGELVNSLIAAGQNVSMELMDLAMKDG 609
G G A+T T+++ ++A +L+ L A Q V ++ D+AM+ G
Sbjct: 774 G-ATGVAFTFFTEQDWKYAPDLIKVLEGANQQVPPQVRDIAMRGG 817
>FB|FBgn0037549 [details] [associations]
symbol:CG7878 species:7227 "Drosophila melanogaster"
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0004386 "helicase activity" evidence=ISS] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR011545 Pfam:PF00013 Pfam:PF00270
Pfam:PF00271 PROSITE:PS00039 PROSITE:PS50084 PROSITE:PS51194
SMART:SM00322 SMART:SM00490 EMBL:AE014297 GO:GO:0005524
GO:GO:0006200 GO:GO:0003723 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00660000095174
HSSP:P10081 OMA:VLDITHV EMBL:AY051831 RefSeq:NP_649767.1
UniGene:Dm.1098 SMR:Q7K4L8 IntAct:Q7K4L8 EnsemblMetazoa:FBtr0113205
GeneID:40959 KEGG:dme:Dmel_CG7878 UCSC:CG7878-RA
FlyBase:FBgn0037549 InParanoid:Q7K4L8 OrthoDB:EOG47D7XG
GenomeRNAi:40959 NextBio:20818674 Uniprot:Q7K4L8
Length = 703
Score = 832 (297.9 bits), Expect = 5.0e-83, P = 5.0e-83
Identities = 177/447 (39%), Positives = 276/447 (61%)
Query: 184 PFNKDFYQDSASISGMSEQDVMEYKK-SLAIRVSG-FD---------VPRPVKTFEDCGF 232
P K+FY+++ ++ +++ ++ ++ + I VS F+ +P PV TFE C F
Sbjct: 230 PLTKNFYKEAPEVANLTKSEIERIREENNKITVSYVFEPKEGETSPPIPNPVWTFEQC-F 288
Query: 233 ST--QLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQ 290
+ ++ I+K G+ KP+ IQ QA PI+L G D+IGIA+TG+GKT AF+LP ++H Q
Sbjct: 289 AEYPDMLEEITKMGFSKPSPIQSQAWPILLQGHDMIGIAQTGTGKTLAFLLPGMIHTEYQ 348
Query: 291 PELQKEEGPIGV-ICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGC 349
+ G V + APTRELA QI +E KK++ G++ VYGG ++ Q +L+ G
Sbjct: 349 STPRGTRGGANVLVLAPTRELALQIEMEVKKYS-FRGMKAVCVYGGGNRNMQISDLERGA 407
Query: 350 EIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLF 409
EI+I TPGRL D++ + +S +TYLVLDEADRM D+GFEPQIR ++ IRPDRQT++
Sbjct: 408 EIIICTPGRLNDLIMANVIDVSTITYLVLDEADRMLDMGFEPQIRKVMLDIRPDRQTIMT 467
Query: 410 SATMPRKVEKLAREILSDPVRVTVGEVGMA-NEDITQVVHVIPSDAEKLPWLLEKLPGMI 468
SAT P V +LA+ + +P++V VG + +A + Q++ ++ D +K + + M
Sbjct: 468 SATWPPGVRRLAQSYMKNPIQVCVGSLDLAATHSVKQIIKLMEDDMDKFNTITSFVKNMS 527
Query: 469 DDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATD 528
+++F +K D++ S+L GF +HG++DQ R + + KSGV +L+ATD
Sbjct: 528 STDKIIIFCGRKVRADDLSSELTLDGFMTQCIHGNRDQMDREQAIADIKSGVVRILVATD 587
Query: 529 VAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELVN 588
VA+RGLDI+ I V+N+D +++ +VHR+GRTGRAG + GT+ + T+++ A EL+
Sbjct: 588 VASRGLDIEDITHVINYDFPHNIEEYVHRVGRTGRAG-RQGTSISFFTREDWAMAKELIE 646
Query: 589 SLIAAGQNVSMELMDLA-----MKDGR 610
L A Q V EL ++A MKD R
Sbjct: 647 ILQEAEQEVPDELHNMARRFKAMKDKR 673
>TAIR|locus:2041549 [details] [associations]
symbol:AT2G42520 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA;ISS] [GO:0005777 "peroxisome" evidence=IDA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0005777 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
EMBL:AC007087 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268804 KO:K11594 ProtClustDB:CLSN2683925
EMBL:BT004111 IPI:IPI00545939 PIR:H84854 RefSeq:NP_181780.1
UniGene:At.43442 ProteinModelPortal:Q84W89 SMR:Q84W89 IntAct:Q84W89
PaxDb:Q84W89 PRIDE:Q84W89 EnsemblPlants:AT2G42520.1 GeneID:818852
KEGG:ath:AT2G42520 GeneFarm:1013 TAIR:At2g42520 InParanoid:Q84W89
OMA:ADSENTG PhylomeDB:Q84W89 Genevestigator:Q84W89
GermOnline:AT2G42520 Uniprot:Q84W89
Length = 633
Score = 792 (283.9 bits), Expect = 2.2e-82, Sum P(2) = 2.2e-82
Identities = 186/436 (42%), Positives = 254/436 (58%)
Query: 181 DYEPFNKDFYQDSASISGMSEQD--VMEYK--KSLAIRVSGFDVPRPVKTFEDCGFSTQL 236
+ PF D DS +EQD V+ + + + I SG +VP PV TF + L
Sbjct: 114 EVNPFEND---DSEPEPAFTEQDNTVINFDAYEDIPIETSGDNVPPPVNTFAEIDLGEAL 170
Query: 237 MHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKE 296
I + Y KPT +Q A+PI+L GRD++ A+TGSGKTAAF P+I IM +Q+
Sbjct: 171 NLNIRRCKYVKPTPVQRHAIPILLEGRDLMACAQTGSGKTAAFCFPIISGIMKDQHVQRP 230
Query: 297 EG-----PIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEI 351
G P+ VI +PTRELA QI+ E KKF+ G++V YGG Q +EL+ G +I
Sbjct: 231 RGSRTVYPLAVILSPTRELASQIHDEAKKFSYQTGVKVVVAYGGTPINQQLRELERGVDI 290
Query: 352 VIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQI----RPDRQTL 407
++ATPGRL D+L+ ++M + +L LDEADRM D+GFEPQIR IV Q+ R RQTL
Sbjct: 291 LVATPGRLNDLLERARVSMQMIRFLALDEADRMLDMGFEPQIRKIVEQMDMPPRGVRQTL 350
Query: 408 LFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEKLPGM 467
LFSAT PR++++LA + L++ + + VG VG + + I Q V + D++K L++ L
Sbjct: 351 LFSATFPREIQRLAADFLANYIFLAVGRVGSSTDLIVQRVEFV-LDSDKRSHLMDLLHAQ 409
Query: 468 IDDGD------VLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVY 521
++G LVF K D +E+ L GF A ++HGD+ Q R L+ FKSG
Sbjct: 410 RENGIQGKQALTLVFVETKRGADSLENWLCINGFPATSIHGDRTQQEREVALKAFKSGRT 469
Query: 522 HVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEAR 581
+L+ATDVAARGLDI + VVNFD+ D+D +VHRIGRTGRAG K G A
Sbjct: 470 PILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAG-KSGLATAFFNDGNTS 528
Query: 582 FAGELVNSLIAAGQNV 597
A L + A Q V
Sbjct: 529 LARPLAELMQEANQEV 544
Score = 53 (23.7 bits), Expect = 2.2e-82, Sum P(2) = 2.2e-82
Identities = 26/108 (24%), Positives = 39/108 (36%)
Query: 641 GLGIGYTPESNNTSSQSVPSRSAAVNSLKTGMMTQF--RSNFVAASSNTPSEG-FNNSAS 697
GL + + N + ++ + N +T++ RS+F N S G F
Sbjct: 516 GLATAFFNDGNTSLARPLAELMQEANQEVPEWLTRYASRSSF-GGGKNRRSGGRFGGRDF 574
Query: 698 AYANKRPALRGFVSGGSIGGDVNGTQTTGLTGFVSGGSIGGEMSGTQT 745
+ RG GG GG G G G+ GG GG G +
Sbjct: 575 RREGSFGSGRGGYGGGG-GGYGGGGGYGGGGGYGGGGGYGGGYGGASS 621
Score = 43 (20.2 bits), Expect = 2.5e-81, Sum P(2) = 2.5e-81
Identities = 14/35 (40%), Positives = 16/35 (45%)
Query: 708 GFVSGGSIGGDVNGTQTTGLTGFVSGGSIGGEMSG 742
G+ GG GG G G G+ GG GG SG
Sbjct: 593 GYGGGGGYGG---GGGYGGGGGY--GGGYGGASSG 622
Score = 41 (19.5 bits), Expect = 4.0e-81, Sum P(2) = 4.0e-81
Identities = 8/22 (36%), Positives = 10/22 (45%)
Query: 708 GFVSGGSIGGDVNGTQTTGLTG 729
G+ GG GG G + G G
Sbjct: 605 GYGGGGGYGGGYGGASSGGYGG 626
>GENEDB_PFALCIPARUM|PFE0430w [details] [associations]
symbol:PFE0430w "ATP-dependent RNA helicase,
putative" species:5833 "Plasmodium falciparum" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0004004 EMBL:AL844504
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 KO:K12811
RefSeq:XP_001351645.1 ProteinModelPortal:Q8I416 IntAct:Q8I416
MINT:MINT-1560531 EnsemblProtists:PFE0430w:mRNA GeneID:812854
KEGG:pfa:PFE0430w EuPathDB:PlasmoDB:PF3D7_0508700
HOGENOM:HOG000284107 ProtClustDB:CLSZ2433224 Uniprot:Q8I416
Length = 1490
Score = 822 (294.4 bits), Expect = 2.7e-82, Sum P(2) = 2.7e-82
Identities = 185/489 (37%), Positives = 292/489 (59%)
Query: 107 DEEDPM-ESFLMAKKDVGLTLAADALRAGYDSDEEVYAAAKAVDAGMLDYDSDDNPVVVE 165
+E+D M ES L K+ +DA + D ++ ++ K+ L+Y+ ++ +
Sbjct: 612 NEKDNMNESNLTDSKNKKQNKGSDASFSSSDDTDDKLSSNKSE----LNYE-ENGMKKMN 666
Query: 166 KKKIEPIPALDHSLIDYEPFNKDFYQDSASISGMSEQDVMEYKKSLA-IRVSGFDVPRPV 224
KK +E ++H IDY P K+ Y I+ M + DV ++K+ I V G + PRPV
Sbjct: 667 KKLLE----VNHDEIDYIPIKKNIYVQVKEITNMKDSDVDMFRKNNGNIIVRGKNCPRPV 722
Query: 225 KTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMI 284
+ F CG ++++ + K+ ++K +IQ Q +P ++ GRD+I IA+TGSGKT +++ P+I
Sbjct: 723 QYFYQCGLPSKILQILEKKNFKKMYNIQMQTIPALMCGRDVIAIAETGSGKTLSYLFPVI 782
Query: 285 VHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKE 344
H++ Q L+ +GPI +I PTREL+ Q+ E K + K+ I + AVYGG + Q K
Sbjct: 783 RHVLHQEPLRNNDGPISIILTPTRELSIQVKNEAKIYCKAVNIEILAVYGGSNIARQLKV 842
Query: 345 LKAGCEIVIATPGRLIDMLKM---KALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIR 401
LK G EI++ TPGR+ID+L + K ++RV+++VLDEADR+ DLGFE QI +I+ R
Sbjct: 843 LKKGVEILVGTPGRIIDILTISNCKVTNLNRVSFVVLDEADRLLDLGFESQIYNILRNCR 902
Query: 402 PDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLL 461
D+QT + SAT P ++ +A+++L P+ + VGE G N +I Q V +I +++K+ LL
Sbjct: 903 KDKQTAMISATFPNYIQNMAKKLLYKPIEIIVGEKGKTNNNIYQFVEII-EESKKVFRLL 961
Query: 462 EKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVY 521
+ L I G VL+F +K+ D + +L + + LHG +DQ R L+KFK
Sbjct: 962 KLLGEWIKYGLVLIFVNKQIEADLLYLELYKYDYNLLVLHGGQDQTDRQFTLEKFKKEEN 1021
Query: 522 HVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEAR 581
VLIAT V ARG+DIK+I V+N+ ++ ++HRIGRTGR+ + G AYT + E
Sbjct: 1022 KVLIATSVMARGIDIKNIILVINYQCPDHIEDYIHRIGRTGRSNNI-GYAYTFILPNEYT 1080
Query: 582 FAGELVNSL 590
A ++ N L
Sbjct: 1081 KAYDIYNLL 1089
Score = 42 (19.8 bits), Expect = 2.7e-82, Sum P(2) = 2.7e-82
Identities = 7/19 (36%), Positives = 14/19 (73%)
Query: 39 SHDNYEDTDLDNIDYEDND 57
+++NY D + +N D +D+D
Sbjct: 569 TNNNYSDNNNNNDDDDDDD 587
Score = 42 (19.8 bits), Expect = 2.7e-82, Sum P(2) = 2.7e-82
Identities = 11/42 (26%), Positives = 19/42 (45%)
Query: 31 YVPPSSRYSHDNYEDTDLDNIDYEDNDAAKAANDTGNGAEKE 72
+V + ++ NYE + N D E N+ N+ N K+
Sbjct: 268 FVLDDKKKNYHNYESDEETNKD-ESNNNNNNNNNNNNNNNKD 308
>UNIPROTKB|Q8I416 [details] [associations]
symbol:PFE0430w "ATP-dependent RNA Helicase, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0004004 EMBL:AL844504
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 KO:K12811
RefSeq:XP_001351645.1 ProteinModelPortal:Q8I416 IntAct:Q8I416
MINT:MINT-1560531 EnsemblProtists:PFE0430w:mRNA GeneID:812854
KEGG:pfa:PFE0430w EuPathDB:PlasmoDB:PF3D7_0508700
HOGENOM:HOG000284107 ProtClustDB:CLSZ2433224 Uniprot:Q8I416
Length = 1490
Score = 822 (294.4 bits), Expect = 2.7e-82, Sum P(2) = 2.7e-82
Identities = 185/489 (37%), Positives = 292/489 (59%)
Query: 107 DEEDPM-ESFLMAKKDVGLTLAADALRAGYDSDEEVYAAAKAVDAGMLDYDSDDNPVVVE 165
+E+D M ES L K+ +DA + D ++ ++ K+ L+Y+ ++ +
Sbjct: 612 NEKDNMNESNLTDSKNKKQNKGSDASFSSSDDTDDKLSSNKSE----LNYE-ENGMKKMN 666
Query: 166 KKKIEPIPALDHSLIDYEPFNKDFYQDSASISGMSEQDVMEYKKSLA-IRVSGFDVPRPV 224
KK +E ++H IDY P K+ Y I+ M + DV ++K+ I V G + PRPV
Sbjct: 667 KKLLE----VNHDEIDYIPIKKNIYVQVKEITNMKDSDVDMFRKNNGNIIVRGKNCPRPV 722
Query: 225 KTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMI 284
+ F CG ++++ + K+ ++K +IQ Q +P ++ GRD+I IA+TGSGKT +++ P+I
Sbjct: 723 QYFYQCGLPSKILQILEKKNFKKMYNIQMQTIPALMCGRDVIAIAETGSGKTLSYLFPVI 782
Query: 285 VHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKE 344
H++ Q L+ +GPI +I PTREL+ Q+ E K + K+ I + AVYGG + Q K
Sbjct: 783 RHVLHQEPLRNNDGPISIILTPTRELSIQVKNEAKIYCKAVNIEILAVYGGSNIARQLKV 842
Query: 345 LKAGCEIVIATPGRLIDMLKM---KALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIR 401
LK G EI++ TPGR+ID+L + K ++RV+++VLDEADR+ DLGFE QI +I+ R
Sbjct: 843 LKKGVEILVGTPGRIIDILTISNCKVTNLNRVSFVVLDEADRLLDLGFESQIYNILRNCR 902
Query: 402 PDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLL 461
D+QT + SAT P ++ +A+++L P+ + VGE G N +I Q V +I +++K+ LL
Sbjct: 903 KDKQTAMISATFPNYIQNMAKKLLYKPIEIIVGEKGKTNNNIYQFVEII-EESKKVFRLL 961
Query: 462 EKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVY 521
+ L I G VL+F +K+ D + +L + + LHG +DQ R L+KFK
Sbjct: 962 KLLGEWIKYGLVLIFVNKQIEADLLYLELYKYDYNLLVLHGGQDQTDRQFTLEKFKKEEN 1021
Query: 522 HVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEAR 581
VLIAT V ARG+DIK+I V+N+ ++ ++HRIGRTGR+ + G AYT + E
Sbjct: 1022 KVLIATSVMARGIDIKNIILVINYQCPDHIEDYIHRIGRTGRSNNI-GYAYTFILPNEYT 1080
Query: 582 FAGELVNSL 590
A ++ N L
Sbjct: 1081 KAYDIYNLL 1089
Score = 42 (19.8 bits), Expect = 2.7e-82, Sum P(2) = 2.7e-82
Identities = 7/19 (36%), Positives = 14/19 (73%)
Query: 39 SHDNYEDTDLDNIDYEDND 57
+++NY D + +N D +D+D
Sbjct: 569 TNNNYSDNNNNNDDDDDDD 587
Score = 42 (19.8 bits), Expect = 2.7e-82, Sum P(2) = 2.7e-82
Identities = 11/42 (26%), Positives = 19/42 (45%)
Query: 31 YVPPSSRYSHDNYEDTDLDNIDYEDNDAAKAANDTGNGAEKE 72
+V + ++ NYE + N D E N+ N+ N K+
Sbjct: 268 FVLDDKKKNYHNYESDEETNKD-ESNNNNNNNNNNNNNNNKD 308
>UNIPROTKB|F1SQ03 [details] [associations]
symbol:LOC100524536 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR011545
Pfam:PF00013 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS50084 PROSITE:PS51194 SMART:SM00322 SMART:SM00490
GO:GO:0005524 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
OMA:GLKSICI EMBL:CU927956 RefSeq:XP_003135023.1
ProteinModelPortal:F1SQ03 Ensembl:ENSSSCT00000013311
GeneID:100524536 Uniprot:F1SQ03
Length = 630
Score = 824 (295.1 bits), Expect = 3.6e-82, P = 3.6e-82
Identities = 185/504 (36%), Positives = 292/504 (57%)
Query: 116 LMAKKDVGLTLAADALRAGYDSDEEVYAAAKAVDAGM-LDYDS---DDNPVVV-EKKKIE 170
+ AK + + GY+S V AA G L D+ + P++ ++ K E
Sbjct: 102 MKAKAKAAIEALIKNKQGGYNSRSSVGNAASQPSVGRGLSRDNSVREAQPLIDWDQIKAE 161
Query: 171 PIPALDHSLIDYEPFNKDFYQDSASISGMSEQDVMEYKK-SLAIRVSGFD------VPRP 223
+ D P +K+FY ++ + S MS+ V ++K + + + +P P
Sbjct: 162 VVEWEKRKWADLPPIHKNFYVETKATSSMSQVQVDIWRKENFNVMCNDLKDGEKRPIPNP 221
Query: 224 VKTFEDC-GFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLP 282
+ FED G +LM +I K G++KPT IQ QA PI+L G D+IGIA+TG+GKT ++++P
Sbjct: 222 ICKFEDAFGPYPELMKSIKKAGFQKPTPIQSQAWPIVLQGIDLIGIAQTGTGKTLSYLMP 281
Query: 283 MIVHIMDQPELQ-KEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQ 341
+H+ QP + K GP ++ PTRELA Q+ E K++ G++ +YGG ++ Q
Sbjct: 282 GFIHLNSQPVSRGKRNGPGMLVLTPTRELALQVGAECSKYSYK-GLKSVCIYGGGNRKGQ 340
Query: 342 FKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIR 401
+++ G +I+IATPGRL D+ + + +TYLVLDEAD+M DLGFE QI I+ +R
Sbjct: 341 IQDIMKGVDIIIATPGRLNDLQMNNFVNLRSITYLVLDEADKMLDLGFEHQIMKILLDVR 400
Query: 402 PDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLL 461
PDRQT++ SAT P + +LA L +P+ V VG + + D + +I ++ EK
Sbjct: 401 PDRQTIMTSATWPDTIRQLAHSYLKEPMLVYVGTLDLVAVDTVKQNIIITTEEEKRSLFQ 460
Query: 462 EKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVY 521
E L + V+VF S+K D++ S L+ +G +LHGD++Q+ R L FK+G
Sbjct: 461 EFLQSLSPKDKVIVFVSRKLIADDLSSDLSIQGIPVQSLHGDREQSDRERALDDFKTGKV 520
Query: 522 HVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEAR 581
+LIATD+A+RGLD+ + V N++ R+++ +VHR+GRTGRAG K G + TL+TQ + +
Sbjct: 521 KILIATDLASRGLDVSDVTHVFNYNFPRNIEEYVHRVGRTGRAG-KMGESVTLMTQDDWK 579
Query: 582 FAGELVNSLIAAGQNVSMELMDLA 605
AGEL+ L A Q++ +L+ +A
Sbjct: 580 VAGELIEILQRANQSIPEDLLSMA 603
>UNIPROTKB|Q9NXZ2 [details] [associations]
symbol:DDX43 "Probable ATP-dependent RNA helicase DDX43"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=TAS] [GO:0005622 "intracellular"
evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR011545
Pfam:PF00013 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS50084 PROSITE:PS51194 SMART:SM00322 SMART:SM00490
GO:GO:0005524 GO:GO:0003723 GO:GO:0005622 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268804
HOVERGEN:HBG015893 EMBL:AJ278110 EMBL:AL136751 EMBL:BC066938
IPI:IPI00032899 RefSeq:NP_061135.2 UniGene:Hs.125507
ProteinModelPortal:Q9NXZ2 SMR:Q9NXZ2 STRING:Q9NXZ2
PhosphoSite:Q9NXZ2 DMDM:145559466 PRIDE:Q9NXZ2 DNASU:55510
Ensembl:ENST00000370336 GeneID:55510 KEGG:hsa:55510 UCSC:uc003pgw.3
CTD:55510 GeneCards:GC06P074161 HGNC:HGNC:18677 HPA:HPA031380
HPA:HPA031381 MIM:606286 neXtProt:NX_Q9NXZ2 PharmGKB:PA134988734
InParanoid:Q9NXZ2 OMA:VLDITHV OrthoDB:EOG43BMNQ PhylomeDB:Q9NXZ2
ChiTaRS:DDX43 GenomeRNAi:55510 NextBio:59918 ArrayExpress:Q9NXZ2
Bgee:Q9NXZ2 CleanEx:HS_DDX43 Genevestigator:Q9NXZ2
GermOnline:ENSG00000080007 Uniprot:Q9NXZ2
Length = 648
Score = 822 (294.4 bits), Expect = 5.8e-82, P = 5.8e-82
Identities = 176/437 (40%), Positives = 268/437 (61%)
Query: 181 DYEPFNKDFYQDSASISGMSEQDVMEYKKSLAIRVSGFD--------VPRPVKTFEDCGF 232
D P K+FY++S + S MS+ + ++K ++ D +P P TF+D F
Sbjct: 190 DLPPIKKNFYKESTATSAMSKVEADSWRKE-NFNITWDDLKDGEKRPIPNPTCTFDDA-F 247
Query: 233 ST--QLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQ 290
++M I K G++KPT IQ QA PI+L G D+IG+A+TG+GKT +++P +H++ Q
Sbjct: 248 QCYPEVMENIKKAGFQKPTPIQSQAWPIVLQGIDLIGVAQTGTGKTLCYLMPGFIHLVLQ 307
Query: 291 PELQKEEGPIGV-ICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGC 349
P L+ + G+ + PTRELA Q+ E K++ G+R VYGG ++ +Q +ELK G
Sbjct: 308 PSLKGQRNRPGMLVLTPTRELALQVEGECCKYSYK-GLRSVCVYGGGNRDEQIEELKKGV 366
Query: 350 EIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLF 409
+I+IATPGRL D+ + + +TYLVLDEAD+M D+GFEPQI I+ +RPDRQT++
Sbjct: 367 DIIIATPGRLNDLQMSNFVNLKNITYLVLDEADKMLDMGFEPQIMKILLDVRPDRQTVMT 426
Query: 410 SATMPRKVEKLAREILSDPVRVTVGEVGM-ANEDITQVVHVIPSDAEKLPWLLEKLPGMI 468
SAT P V +LA+ L +P+ V VG + + A + Q + ++ ++ EK + L M
Sbjct: 427 SATWPHSVHRLAQSYLKEPMIVYVGTLDLVAVSSVKQNI-IVTTEEEKWSHMQTFLQSMS 485
Query: 469 DDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATD 528
V+VF S+K D + S L +LHGD++Q R + L+ FK+G +LIATD
Sbjct: 486 STDKVIVFVSRKAVADHLSSDLILGNISVESLHGDREQRDREKALENFKTGKVRILIATD 545
Query: 529 VAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELVN 588
+A+RGLD+ + V NFD R+++ +VHRIGRTGRAG + G + T +T+ + R A EL+N
Sbjct: 546 LASRGLDVHDVTHVYNFDFPRNIEEYVHRIGRTGRAG-RTGVSITTLTRNDWRVASELIN 604
Query: 589 SLIAAGQNVSMELMDLA 605
L A Q++ EL+ +A
Sbjct: 605 ILERANQSIPEELVSMA 621
>ZFIN|ZDB-GENE-080204-77 [details] [associations]
symbol:ddx43 "DEAD (Asp-Glu-Ala-Asp) box polypeptide
43" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR011545
Pfam:PF00013 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS50084 PROSITE:PS51194 SMART:SM00322 SMART:SM00490
ZFIN:ZDB-GENE-080204-77 GO:GO:0005524 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268804
GeneTree:ENSGT00660000095174 HOVERGEN:HBG015893 OrthoDB:EOG43BMNQ
EMBL:BX890626 EMBL:CR354610 IPI:IPI00886666 UniGene:Dr.41756
Ensembl:ENSDART00000101479 OMA:IDITSIT Uniprot:B8A609
Length = 719
Score = 822 (294.4 bits), Expect = 5.8e-82, P = 5.8e-82
Identities = 194/487 (39%), Positives = 286/487 (58%)
Query: 137 SDEEVYAAAKAVDAGM-LDYDS-DDNPVVVEKKKIEPIPALDHSLIDYEPFNKDFYQDSA 194
S V AAA A A +D+ S +N E K + +P L K+FY ++
Sbjct: 190 SASAVKAAAAAAPAPTPIDWTSLRENRDKYEAMKWQDLPVL----------KKNFYIEAK 239
Query: 195 SISGMSEQDVMEYKK-SLAIRVSGFD------VPRPVKTFEDC-GFSTQLMHAISKQGYE 246
S++ S ++V ++K + I V +P PV TFE+ +M I + G++
Sbjct: 240 SVAARSAEEVKIWRKENNNIFVDDLKDGDKRTIPNPVCTFEEAFAHYPGIMENIVRVGFK 299
Query: 247 KPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQP-ELQKEEGPIGVICA 305
KPT IQ QA P++L+G D+IGIA+TG+GKT A++LP +H+ QP K GP ++
Sbjct: 300 KPTPIQSQAWPVVLNGIDLIGIAQTGTGKTLAYLLPGFIHMDGQPMPRDKRNGPGMLVLT 359
Query: 306 PTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKM 365
PTRELA QI E K++ G + +YGG + Q K + +G +IVIATPGRL D+
Sbjct: 360 PTRELALQIEAECNKYSYK-GFKSICIYGGGDRNAQIKVVTSGVDIVIATPGRLNDLQMN 418
Query: 366 KALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLAREIL 425
+ + + +TYLVLDEADRM D+GFEPQI I+ IRPDRQT++ SAT P V +LA+ L
Sbjct: 419 ELINLRSITYLVLDEADRMLDMGFEPQIMKIILDIRPDRQTVMTSATWPPGVRRLAKSYL 478
Query: 426 SDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEKLPGMIDDGDVLVFASKKTTVDE 485
DP+ V VG + +A + Q + + EK ++ + + M VL+F KK D+
Sbjct: 479 KDPMMVYVGTLDLAAVNTVQQTVLFVQEDEKKDYVFDFIHRMEPLDKVLIFVGKKLKADD 538
Query: 486 IESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVNF 545
+ S L +G +LHGD++Q R E LQ FK G +L+ATD+A+RGLD+ I V N+
Sbjct: 539 LSSDLCLQGIAVQSLHGDREQCDREEALQDFKDGRVRILVATDLASRGLDVHDITHVFNY 598
Query: 546 DIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELVNSLIAAGQNVSMELMDLA 605
D R+++ +VHR+GRTGRAG + G + TLVT+++ R A EL+ L +GQ+V EL+ +A
Sbjct: 599 DFPRNVEEYVHRVGRTGRAG-RSGESVTLVTREDWRVAAELITILERSGQDVPEELVLMA 657
Query: 606 MKDGRFR 612
+ + R
Sbjct: 658 ERYEKHR 664
>UNIPROTKB|I3LDV0 [details] [associations]
symbol:DDX3Y "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 OMA:TILWVYE EMBL:FP565155
Ensembl:ENSSSCT00000028884 Uniprot:I3LDV0
Length = 667
Score = 756 (271.2 bits), Expect = 1.5e-81, Sum P(3) = 1.5e-81
Identities = 169/414 (40%), Positives = 249/414 (60%)
Query: 211 LAIRVSGFDVPRPVKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAK 270
+ + +G + PR +++F D +M I Y +PT +Q A+PII RD++ A+
Sbjct: 167 IPVEATGNNCPRHIESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQ 226
Query: 271 TGSGKTAAFVLPMIVHIM-DQP----ELQKEEG--------PIGVICAPTRELAHQIYLE 317
TGSGKTAAF+LP++ I D P + KE G PI ++ APTRELA QIY E
Sbjct: 227 TGSGKTAAFLLPILSQIYTDGPGEALKAVKENGRYGRRKQYPISLVLAPTRELAVQIYEE 286
Query: 318 TKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLV 377
+KF+ +R VYGG Q ++L+ GC +++ATPGRL+DM++ + + YLV
Sbjct: 287 ARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLV 346
Query: 378 LDEADRMFDLGFEPQIRSIVGQ--IRPD--RQTLLFSATMPRKVEKLAREILSDPVRVTV 433
LDEADRM D+GFEPQIR IV Q + P R T++FSAT P++++ LAR+ L + + + V
Sbjct: 347 LDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAV 406
Query: 434 GEVGMANEDITQVVHVIPSDAEKLPWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQK 493
G VG +E+ITQ V V +++K +LL+ L D LVF K D +E L +
Sbjct: 407 GRVGSTSENITQKV-VWVEESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHE 465
Query: 494 GFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVNFDIARDMDM 553
G+ ++HGD+ Q R E L +F+SG +L+AT VAARGLDI ++K V+NFD+ D++
Sbjct: 466 GYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEE 525
Query: 554 HVHRIGRTGRAGDKD--GTAYTLVTQKEARFAGELVNSLIAAGQNVSMELMDLA 605
+VHRIGRTGR G+ G A + ++ +L++ L+ A Q V L ++A
Sbjct: 526 YVHRIGRTGRVGNLGLIGLATSFFNERNINITKDLLDLLVEAKQEVPSWLENMA 579
Score = 51 (23.0 bits), Expect = 1.5e-81, Sum P(3) = 1.5e-81
Identities = 17/55 (30%), Positives = 24/55 (43%)
Query: 8 FEGFNINRQTSYSFEQSQAPQRLYVPPSSRY---SHDNYEDTDLDNIDY-EDNDA 58
F G ++N + S S A + Y+PP R S + Y D D +D DA
Sbjct: 16 FAGLDLNSSDNQSGGGSTASKGRYIPPHLRNREASKEGYYDKDSSGWSCSKDKDA 70
Score = 43 (20.2 bits), Expect = 1.5e-81, Sum P(3) = 1.5e-81
Identities = 18/61 (29%), Positives = 25/61 (40%)
Query: 661 RSAAVNSLKTGMMTQ-FRSNFVAASSNTPSEGFNNSASAYANKRPALRGFVSGGSIGGDV 719
RS + N G + +R + + SS S +S S + RGF SGG G
Sbjct: 591 RSKSYNRFSGGFGARDYRQSSSSGSSTFSSSRAGSSRSG-GGGHSSSRGF-SGGGYGSFY 648
Query: 720 N 720
N
Sbjct: 649 N 649
>UNIPROTKB|I3LHW0 [details] [associations]
symbol:I3LHW0 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR011545
Pfam:PF00013 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS50084 PROSITE:PS51194 SMART:SM00322 SMART:SM00490
GO:GO:0005524 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00660000095174 Ensembl:ENSSSCT00000032137 OMA:FESQIMK
Uniprot:I3LHW0
Length = 621
Score = 818 (293.0 bits), Expect = 1.5e-81, P = 1.5e-81
Identities = 185/504 (36%), Positives = 293/504 (58%)
Query: 116 LMAKKDVGLTLAADALRAGYDSDEEVYAAAKAVDAGM-LDYDS---DDNPVVV-EKKKIE 170
+ AK + + GY+S V AA G L D+ + P++ ++ K E
Sbjct: 94 MKAKAKAAIEALIKNKQGGYNSRSSVGNAASQPSVGRGLSRDNSVREAQPLIDWDQIKAE 153
Query: 171 PIPALDHSLIDYEPFNKDFYQDSASISGMSEQDVMEYKK-SLAIRVSGFD------VPRP 223
+ + D P +K+FY ++ + S MS+ V ++K + + + +P P
Sbjct: 154 VVE-WEKRKWDLPPIHKNFYVETKATSSMSQVQVDIWRKENFNVMCNDLKDGEKRPIPNP 212
Query: 224 VKTFEDC-GFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLP 282
+ FED G +LM +I K G++KPT IQ QA PI+L G D+IGIA+TG+GKT ++++P
Sbjct: 213 ICKFEDAFGPYPELMKSIKKAGFQKPTPIQSQAWPIVLQGIDLIGIAQTGTGKTLSYLMP 272
Query: 283 MIVHIMDQPELQ-KEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQ 341
+H+ QP + K GP ++ PTRELA Q+ E K++ G++ +YGG ++ Q
Sbjct: 273 GFIHLNSQPVSRGKRNGPGMLVLTPTRELALQVGAECSKYSYK-GLKSVCIYGGGNRKGQ 331
Query: 342 FKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIR 401
+++ G +I+IATPGRL D+ + + +TYLVLDEAD+M DLGFE QI I+ +R
Sbjct: 332 IQDIMKGVDIIIATPGRLNDLQMNNFVNLRSITYLVLDEADKMLDLGFEHQIMKILLDVR 391
Query: 402 PDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLL 461
PDRQT++ SAT P + +LA L +P+ V VG + + D + +I ++ EK
Sbjct: 392 PDRQTIMTSATWPDTIRQLAHSYLKEPMLVYVGTLDLVAVDTVKQNIIITTEEEKRSLFQ 451
Query: 462 EKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVY 521
E L + V+VF S+K D++ S L+ +G +LHGD++Q+ R L FK+G
Sbjct: 452 EFLQSLSPKDKVIVFVSRKLIADDLSSDLSIQGIPVQSLHGDREQSDRERALDDFKTGKV 511
Query: 522 HVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEAR 581
+LIATD+A+RGLD+ + V N++ R+++ +VHR+GRTGRAG K G + TL+TQ + +
Sbjct: 512 KILIATDLASRGLDVSDVTHVFNYNFPRNIEEYVHRVGRTGRAG-KMGESVTLMTQDDWK 570
Query: 582 FAGELVNSLIAAGQNVSMELMDLA 605
AGEL+ L A Q++ +L+ +A
Sbjct: 571 VAGELIEILQRANQSIPEDLLSMA 594
>WB|WBGene00017162 [details] [associations]
symbol:ddx-23 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0002009 "morphogenesis of an
epithelium" evidence=IMP] [GO:0040011 "locomotion" evidence=IMP]
[GO:0000003 "reproduction" evidence=IMP] [GO:0040035 "hermaphrodite
genitalia development" evidence=IMP] [GO:0040007 "growth"
evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] [GO:0042127 "regulation of cell proliferation"
evidence=IMP] [GO:0040020 "regulation of meiosis" evidence=IMP]
[GO:0010172 "embryonic body morphogenesis" evidence=IMP]
[GO:0048589 "developmental growth" evidence=IMP] [GO:0007281 "germ
cell development" evidence=IMP] [GO:0005634 "nucleus" evidence=IDA]
[GO:0040021 "hermaphrodite germ-line sex determination"
evidence=IMP] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0009792 GO:GO:0002009 GO:GO:0002119 GO:GO:0040011
GO:GO:0003676 GO:GO:0042127 GO:GO:0040035 GO:GO:0007281
GO:GO:0048589 EMBL:FO080705 GO:GO:0010172 GO:GO:0040020
GeneTree:ENSGT00690000102171 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K12858 HSSP:Q58083 HOGENOM:HOG000268796
OMA:PIRNWKE GO:GO:0040021 RefSeq:NP_498260.2
ProteinModelPortal:Q95QN2 SMR:Q95QN2 STRING:Q95QN2 PaxDb:Q95QN2
EnsemblMetazoa:F01F1.7 GeneID:175818 KEGG:cel:CELE_F01F1.7
CTD:175818 WormBase:F01F1.7 InParanoid:Q95QN2 NextBio:889790
Uniprot:Q95QN2
Length = 730
Score = 512 (185.3 bits), Expect = 2.0e-81, Sum P(2) = 2.0e-81
Identities = 100/212 (47%), Positives = 150/212 (70%)
Query: 196 ISGMSEQDVMEYKKSLAIRVSGFDVPRPVKTFEDCGFSTQLMHAISKQGYEKPTSIQCQA 255
+S MS++D +++ I + G VPRP++ +E+ GF ++ A+ + GY +PT IQ QA
Sbjct: 272 LSEMSDRDWRIFREDFNISIKGGRVPRPLRNWEEAGFPDEVYQAVKEIGYLEPTPIQRQA 331
Query: 256 LPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEE----GPIGVICAPTRELA 311
+PI L RD+IG+A+TGSGKTAAF+LP++V I P+++++E GP +I APTRELA
Sbjct: 332 IPIGLQNRDVIGVAETGSGKTAAFLLPLLVWITSLPKMERQEHRDLGPYAIIMAPTRELA 391
Query: 312 HQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMS 371
QI ET KF K GI+ +V GG S+ DQ +L+ G E+VIATPGRL+D+L+ + L ++
Sbjct: 392 QQIEEETNKFGKLLGIKTVSVIGGASREDQGMKLRMGVEVVIATPGRLLDVLENRYLLLN 451
Query: 372 RVTYLVLDEADRMFDLGFEPQIRSIVGQIRPD 403
+ TY++LDEADRM D+GFEP ++ ++ + PD
Sbjct: 452 QCTYVILDEADRMLDMGFEPDVQKVL-EYMPD 482
Score = 348 (127.6 bits), Expect = 2.0e-81, Sum P(2) = 2.0e-81
Identities = 73/188 (38%), Positives = 110/188 (58%)
Query: 404 RQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEK 463
RQT++F+ATM +E+LAR+ L P V +G G E + QVV+++P D ++ L+E
Sbjct: 509 RQTVMFTATMSSAIERLARQYLRRPAVVHIGSAGKPTERVEQVVYMVPEDRKRKK-LVEV 567
Query: 464 LPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHV 523
L +++F ++K D + L + GFK LHG K Q R LQ K G +
Sbjct: 568 LESQFQP-PIIIFVNQKKGADMLSKGLTKLGFKPTVLHGGKGQDQREYALQALKEGTSDI 626
Query: 524 LIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFA 583
L+ATDVA RG+D+K + V+N+D+A+ ++ + HRIGRTGRAG K G A T +T +
Sbjct: 627 LVATDVAGRGIDVKDVSLVLNYDMAKSIEDYTHRIGRTGRAG-KHGKAITFLTPDDTAVY 685
Query: 584 GELVNSLI 591
+L L+
Sbjct: 686 FDLKQVLV 693
>TAIR|locus:2076351 [details] [associations]
symbol:AT3G58510 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA;ISS] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005886
"plasma membrane" evidence=IDA] [GO:0005777 "peroxisome"
evidence=IDA] [GO:0005829 "cytosol" evidence=RCA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005886
GO:GO:0005524 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0005730
GO:GO:0005777 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 EMBL:AL137082 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268804 KO:K11594
EMBL:AY088091 EMBL:AY062446 EMBL:AY114637 EMBL:AJ010463
IPI:IPI00521485 PIR:T45671 PIR:T51742 RefSeq:NP_001030884.1
RefSeq:NP_567067.1 RefSeq:NP_974455.1 UniGene:At.22801
UniGene:At.70259 ProteinModelPortal:Q8LA13 SMR:Q8LA13 IntAct:Q8LA13
STRING:Q8LA13 PaxDb:Q8LA13 PRIDE:Q8LA13 EnsemblPlants:AT3G58510.1
EnsemblPlants:AT3G58510.2 EnsemblPlants:AT3G58510.3 GeneID:825020
KEGG:ath:AT3G58510 GeneFarm:927 TAIR:At3g58510 InParanoid:Q8LA13
OMA:FCAPDEA PhylomeDB:Q8LA13 ProtClustDB:CLSN2683925
Genevestigator:Q8LA13 GermOnline:AT3G58510 Uniprot:Q8LA13
Length = 612
Score = 782 (280.3 bits), Expect = 3.2e-81, Sum P(2) = 3.2e-81
Identities = 173/402 (43%), Positives = 242/402 (60%)
Query: 209 KSLAIRVSGFDVPRPVKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGI 268
+ + + SG DVP PV TF D L I + Y +PT +Q A+PI+L+ RD++
Sbjct: 135 EDIPVETSGGDVPPPVNTFADIDLGDALNLNIRRCKYVRPTPVQRHAIPILLAERDLMAC 194
Query: 269 AKTGSGKTAAFVLPMIVHIMDQPELQKEEG-----PIGVICAPTRELAHQIYLETKKFAK 323
A+TGSGKTAAF P+I IM +++ G P VI +PTRELA QI+ E KKF+
Sbjct: 195 AQTGSGKTAAFCFPIISGIMKDQHVERPRGSRAVYPFAVILSPTRELACQIHDEAKKFSY 254
Query: 324 SHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADR 383
G++V YGG Q +EL+ GC+I++ATPGRL D+L+ ++M + +L LDEADR
Sbjct: 255 QTGVKVVVAYGGTPIHQQLRELERGCDILVATPGRLNDLLERARVSMQMIRFLALDEADR 314
Query: 384 MFDLGFEPQIRSIVGQI----RPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMA 439
M D+GFEPQIR IV Q+ R RQT+LFSAT P ++++LA + +S+ + + VG VG +
Sbjct: 315 MLDMGFEPQIRKIVEQMDMPPRGVRQTMLFSATFPSQIQRLAADFMSNYIFLAVGRVGSS 374
Query: 440 NEDITQVVHVIPSDAEKLPWLLEKLPGMIDDGD----VLVFASKKTTVDEIESQLAQKGF 495
+ ITQ V + +++K L++ L + D LVF K D +E+ L F
Sbjct: 375 TDLITQRVEFV-QESDKRSHLMDLLHAQRETQDKQSLTLVFVETKRGADTLENWLCMNEF 433
Query: 496 KAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVNFDIARDMDMHV 555
A ++HGD+ Q R L+ FK+G +L+ATDVAARGLDI + VVNFD+ D+D +V
Sbjct: 434 PATSIHGDRTQQEREVALRSFKTGRTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYV 493
Query: 556 HRIGRTGRAGDKDGTAYTLVTQKEARFAGELVNSLIAAGQNV 597
HRIGRTGRAG K G A + A+ A L + A Q V
Sbjct: 494 HRIGRTGRAG-KSGIATAFFNENNAQLARSLAELMQEANQEV 534
Score = 52 (23.4 bits), Expect = 3.2e-81, Sum P(2) = 3.2e-81
Identities = 26/103 (25%), Positives = 39/103 (37%)
Query: 641 GLGIGYTPESNNTSSQSVPSRSAAVNSLKTGMMTQFRSNFVAASSNTPSEGFNNSASAYA 700
G+ + E+N ++S+ N +T++ S AS G S +
Sbjct: 506 GIATAFFNENNAQLARSLAELMQEANQEVPEWLTRYASR---ASFGG---GKKRSGGRFG 559
Query: 701 NKRPALRGFVS-GGSIGGDVNGTQTTGLTGFVSGGSIGGEMSG 742
+ G S GG GG G+ G G+ GG GG SG
Sbjct: 560 GRDFRREGSYSRGGGGGGGGGGSDYYGGGGY-GGGGYGGAPSG 601
>FB|FBgn0263231 [details] [associations]
symbol:bel "belle" species:7227 "Drosophila melanogaster"
[GO:0007286 "spermatid development" evidence=IMP] [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS;IMP] [GO:0005524
"ATP binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0043186 "P granule" evidence=IDA] [GO:0007283
"spermatogenesis" evidence=IMP] [GO:0002168 "instar larval
development" evidence=IMP] [GO:0048477 "oogenesis" evidence=IMP]
[GO:0016442 "RNA-induced silencing complex" evidence=IDA]
[GO:0016246 "RNA interference" evidence=IMP] [GO:0005811 "lipid
particle" evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0005875 "microtubule associated complex" evidence=IDA]
[GO:0043025 "neuronal cell body" evidence=IDA] [GO:0010468
"regulation of gene expression" evidence=IMP] [GO:0000070 "mitotic
sister chromatid segregation" evidence=IMP] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 EMBL:AE014297
GO:GO:0005524 GO:GO:0005875 GO:GO:0016246 GO:GO:0007286
GO:GO:0005811 GO:GO:0043025 GO:GO:0048477 GO:GO:0003723
GO:GO:0000070 GO:GO:0016442 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 GO:GO:0002168 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043186
GeneTree:ENSGT00620000087942 KO:K11594 HSSP:P09052 EMBL:AY089613
RefSeq:NP_536783.1 UniGene:Dm.7823 ProteinModelPortal:Q9VHP0
SMR:Q9VHP0 IntAct:Q9VHP0 STRING:Q9VHP0 PaxDb:Q9VHP0 PRIDE:Q9VHP0
EnsemblMetazoa:FBtr0081888 GeneID:45826 KEGG:dme:Dmel_CG9748
UCSC:CG9748-RA CTD:100035747 FlyBase:FBgn0263231 InParanoid:Q9VHP0
OMA:TILWVYE OrthoDB:EOG4DNCKG PhylomeDB:Q9VHP0 GenomeRNAi:45826
NextBio:838377 Bgee:Q9VHP0 Uniprot:Q9VHP0
Length = 798
Score = 757 (271.5 bits), Expect = 5.1e-81, Sum P(3) = 5.1e-81
Identities = 167/453 (36%), Positives = 268/453 (59%)
Query: 178 SLIDYEPFNKDFYQDSASISGMSEQDV-MEYKKSLAIRVSGFDVPRPVKTFEDCGFSTQL 236
S +DY + + G+ + + + + + +G +VP + +F+D + +
Sbjct: 247 SNVDYTKLGARDERLEVELFGVGNTGINFDKYEDIPVEATGQNVPPNITSFDDVQLTEII 306
Query: 237 MHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMD-----QP 291
+ ++ Y+KPT +Q A+PII++GRD++ A+TGSGKTAAF++P++ + + P
Sbjct: 307 RNNVALARYDKPTPVQKHAIPIIINGRDLMACAQTGSGKTAAFLVPILNQMYELGHVPPP 366
Query: 292 EL-----QKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELK 346
+ ++++ P+G++ APTRELA QI+ E KKFA +R + +YGG + +Q +EL
Sbjct: 367 QSTRQYSRRKQYPLGLVLAPTRELATQIFEEAKKFAYRSRMRPAVLYGGNNTSEQMRELD 426
Query: 347 AGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIR-P--- 402
GC +++ATPGRL DM+ + + + +LVLDEADRM D+GFEPQIR IV Q+ P
Sbjct: 427 RGCHLIVATPGRLEDMITRGKVGLENIRFLVLDEADRMLDMGFEPQIRRIVEQLNMPPTG 486
Query: 403 DRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLE 462
RQTL+FSAT P+++++LA + LS+ + + VG VG +E+ITQ + + + +K +LL+
Sbjct: 487 QRQTLMFSATFPKQIQELASDFLSNYIFLAVGRVGSTSENITQTILWV-YEPDKRSYLLD 545
Query: 463 KLPGMID------DGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKF 516
L + D D L+F K D +E L Q ++HGD+ Q R E L+ F
Sbjct: 546 LLSSIRDGPEYTKDSLTLIFVETKKGADSLEEFLYQCNHPVTSIHGDRTQKEREEALRCF 605
Query: 517 KSGVYHVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVT 576
+SG +L+AT VAARGLDI +K V+NFD+ D++ +VHRIGRTGR G+ G A +
Sbjct: 606 RSGDCPILVATAVAARGLDIPHVKHVINFDLPSDVEEYVHRIGRTGRMGNL-GVATSFFN 664
Query: 577 QKEARFAGELVNSLIAAGQNVSMELMDLAMKDG 609
+K +L+ LI Q + + D++ G
Sbjct: 665 EKNRNICSDLLELLIETKQEIPSFMEDMSSDRG 697
Score = 49 (22.3 bits), Expect = 5.1e-81, Sum P(3) = 5.1e-81
Identities = 13/32 (40%), Positives = 15/32 (46%)
Query: 711 SGGSIGGDVNGTQTTGLTGFVSGGSIGGEMSG 742
+G S GG+ G G G GGS GG G
Sbjct: 754 NGNSYGGNSGGGGYYG--GGAGGGSYGGSYGG 783
Score = 45 (20.9 bits), Expect = 1.3e-80, Sum P(3) = 1.3e-80
Identities = 16/45 (35%), Positives = 20/45 (44%)
Query: 704 PALRGFVSGGSIGGDV--NGTQ---TTGLTGFVSGGSIGGEMSGT 743
P G SGG GG NG +G G+ GG+ GG G+
Sbjct: 737 PRSGGSGSGGG-GGSYRSNGNSYGGNSGGGGYYGGGAGGGSYGGS 780
Score = 39 (18.8 bits), Expect = 5.1e-81, Sum P(3) = 5.1e-81
Identities = 12/32 (37%), Positives = 17/32 (53%)
Query: 7 GFEGFNINRQTSYSFEQSQAPQRLYVPPSSRY 38
G G N+N QT+ E QA Q+ P + R+
Sbjct: 175 GGSGSNLNEQTA---EDGQAQQQQQ-PRNDRW 202
>UNIPROTKB|E1BII7 [details] [associations]
symbol:DDX43 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005622 "intracellular" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR011545 Pfam:PF00013 Pfam:PF00270
Pfam:PF00271 PROSITE:PS00039 PROSITE:PS50084 PROSITE:PS51194
SMART:SM00322 SMART:SM00490 GO:GO:0005524 GO:GO:0003723
GO:GO:0005622 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 EMBL:DAAA02025231 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00660000095174 EMBL:DAAA02025227 EMBL:DAAA02025228
EMBL:DAAA02025229 EMBL:DAAA02025230 IPI:IPI00712097
Ensembl:ENSBTAT00000029077 OMA:ANQNIPE Uniprot:E1BII7
Length = 647
Score = 813 (291.2 bits), Expect = 5.2e-81, P = 5.2e-81
Identities = 186/498 (37%), Positives = 293/498 (58%)
Query: 119 KKDVGLTLAADALRAGYDSDEEVYAAAKAVDAGMLDYDS-DDNPVVVEKKKIEPIPALDH 177
K + L +AA L G D+ ++V K ++D+D +N + +KK +P
Sbjct: 141 KTESKLGVAAVQLSDGKDAMKDVSGEQK-----LIDWDKFRENILKWNEKKWAGLP---- 191
Query: 178 SLIDYEPFNKDFYQDSASISGMSEQDVMEYKKS----LAIRVSGFD---VPRPVKTFEDC 230
P K+FY +S S MS++ V ++K + + + +P P FED
Sbjct: 192 ------PVKKNFYIESEKTSSMSQEQVDNWRKENYNIICDDLKDGEKRPLPNPTCNFEDA 245
Query: 231 GFS-TQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMD 289
++M I K G++KPT IQ QA PIIL G D+IG+A+TG+GKT ++++P +HI
Sbjct: 246 FHCYPEVMRNIEKAGFQKPTPIQSQAWPIILQGIDLIGVAQTGTGKTLSYLMPGFIHIDS 305
Query: 290 QPELQK-EEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAG 348
QP LQ+ GP ++ PTRELA Q+ E +++ G++ +YGG + Q K+L G
Sbjct: 306 QPVLQRARNGPGMLVLTPTRELALQVDAECSEYSY-RGLKSVCIYGGGDRDGQIKDLSKG 364
Query: 349 CEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLL 408
+I+IATPGRL D+ + + +TYLVLDEAD+M D+GFEPQI I+ +RPDRQT++
Sbjct: 365 ADIIIATPGRLHDLQMNNFVYLKSITYLVLDEADKMLDMGFEPQIMKILLDVRPDRQTVM 424
Query: 409 FSATMPRKVEKLAREILSDPVRVTVGEVGM-ANEDITQVVHVIPSDAEKLPWLLEKLPGM 467
SAT P V +LA+ L +P+ V VG + + A +TQ + ++ ++ EK + + M
Sbjct: 425 TSATWPYAVRRLAQSYLKEPMIVYVGTLDLVAVSTVTQNI-IVTTEDEKRSHIQAFIDSM 483
Query: 468 IDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIAT 527
V++F S+K D + S L + +LHG+++Q+ R L+ FK+G +LIAT
Sbjct: 484 SPKDKVIIFVSRKAVADHLSSDLGIRRISVESLHGNREQSDRERALKSFKTGKVRILIAT 543
Query: 528 DVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELV 587
D+A+RGLD+ + V N+D R+++ +VHR+GRTGRAG + G + TL+T+ + + AGEL+
Sbjct: 544 DLASRGLDVHDVTHVYNYDFPRNIEEYVHRVGRTGRAG-RTGVSITLITRNDWKIAGELI 602
Query: 588 NSLIAAGQNVSMELMDLA 605
N L A Q+V +L+ +A
Sbjct: 603 NILERANQSVPEDLVSMA 620
>UNIPROTKB|F1RX16 [details] [associations]
symbol:DDX3X "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:2001243 "negative regulation of intrinsic apoptotic
signaling pathway" evidence=IEA] [GO:1900087 "positive regulation
of G1/S transition of mitotic cell cycle" evidence=IEA] [GO:0097193
"intrinsic apoptotic signaling pathway" evidence=IEA] [GO:0071470
"cellular response to osmotic stress" evidence=IEA] [GO:0071243
"cellular response to arsenic-containing substance" evidence=IEA]
[GO:0048027 "mRNA 5'-UTR binding" evidence=IEA] [GO:0045948
"positive regulation of translational initiation" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0045087 "innate immune
response" evidence=IEA] [GO:0043280 "positive regulation of
cysteine-type endopeptidase activity involved in apoptotic process"
evidence=IEA] [GO:0043154 "negative regulation of cysteine-type
endopeptidase activity involved in apoptotic process" evidence=IEA]
[GO:0043066 "negative regulation of apoptotic process"
evidence=IEA] [GO:0043065 "positive regulation of apoptotic
process" evidence=IEA] [GO:0043024 "ribosomal small subunit
binding" evidence=IEA] [GO:0042256 "mature ribosome assembly"
evidence=IEA] [GO:0035613 "RNA stem-loop binding" evidence=IEA]
[GO:0034063 "stress granule assembly" evidence=IEA] [GO:0031333
"negative regulation of protein complex assembly" evidence=IEA]
[GO:0030308 "negative regulation of cell growth" evidence=IEA]
[GO:0030307 "positive regulation of cell growth" evidence=IEA]
[GO:0022627 "cytosolic small ribosomal subunit" evidence=IEA]
[GO:0017148 "negative regulation of translation" evidence=IEA]
[GO:0010501 "RNA secondary structure unwinding" evidence=IEA]
[GO:0010494 "cytoplasmic stress granule" evidence=IEA] [GO:0009615
"response to virus" evidence=IEA] [GO:0008625 "extrinsic apoptotic
signaling pathway via death domain receptors" evidence=IEA]
[GO:0008190 "eukaryotic initiation factor 4E binding" evidence=IEA]
[GO:0008143 "poly(A) RNA binding" evidence=IEA] [GO:0008134
"transcription factor binding" evidence=IEA] [GO:0007243
"intracellular protein kinase cascade" evidence=IEA] [GO:0007059
"chromosome segregation" evidence=IEA] [GO:0005852 "eukaryotic
translation initiation factor 3 complex" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00620000087942 OMA:KYERGGN
EMBL:CU861899 Ensembl:ENSSSCT00000013398 Uniprot:F1RX16
Length = 661
Score = 758 (271.9 bits), Expect = 1.0e-80, Sum P(3) = 1.0e-80
Identities = 169/412 (41%), Positives = 248/412 (60%)
Query: 211 LAIRVSGFDVPRPVKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAK 270
+ + +G + P +++F D +M I Y +PT +Q A+PII RD++ A+
Sbjct: 166 IPVEATGNNCPPHIESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQ 225
Query: 271 TGSGKTAAFVLPMIVHIM-DQP----ELQKEEG--------PIGVICAPTRELAHQIYLE 317
TGSGKTAAF+LP++ I D P KE G PI ++ APTRELA QIY E
Sbjct: 226 TGSGKTAAFLLPILSQIYSDGPGEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEE 285
Query: 318 TKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLV 377
+KF+ +R VYGG Q ++L+ GC +++ATPGRL+DM++ + + YLV
Sbjct: 286 ARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLV 345
Query: 378 LDEADRMFDLGFEPQIRSIVGQ--IRPD--RQTLLFSATMPRKVEKLAREILSDPVRVTV 433
LDEADRM D+GFEPQIR IV Q + P R T++FSAT P++++ LAR+ L + + + V
Sbjct: 346 LDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAV 405
Query: 434 GEVGMANEDITQVVHVIPSDAEKLPWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQK 493
G VG +E+ITQ V V +++K +LL+ L D LVF K D +E L +
Sbjct: 406 GRVGSTSENITQKV-VWVEESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHE 464
Query: 494 GFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVNFDIARDMDM 553
G+ ++HGD+ Q R E L +F+SG +L+AT VAARGLDI ++K V+NFD+ D++
Sbjct: 465 GYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEE 524
Query: 554 HVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELVNSLIAAGQNVSMELMDLA 605
+VHRIGRTGR G+ G A + ++ A +L++ L+ A Q V L ++A
Sbjct: 525 YVHRIGRTGRVGNL-GLATSFFNERNANITKDLLDLLVEAKQEVPSWLENMA 575
Score = 43 (20.2 bits), Expect = 1.0e-80, Sum P(3) = 1.0e-80
Identities = 15/60 (25%), Positives = 24/60 (40%)
Query: 8 FEGFNINRQTSYSFEQSQAPQRLYVPPSSRYSHDNYEDTDLDNIDYEDNDAAKAANDTGN 67
F G ++N + S S A + Y+PP R D D+ + N A + G+
Sbjct: 16 FAGLDLNSSDNQS-GGSTASKGRYIPPHLRNREATKGFYDKDSSGWSSNKDKDAYSSFGS 74
Score = 41 (19.5 bits), Expect = 1.0e-80, Sum P(3) = 1.0e-80
Identities = 13/44 (29%), Positives = 20/44 (45%)
Query: 695 SASAYANKRPALRGFVSGGSIGGDVNGTQTTGLTGFVSGGSIGG 738
S+S++++ R + SGG G G G GF + GG
Sbjct: 608 SSSSFSSSRASSSR--SGGGGHGSSRGFGGGGYGGFYNSDGYGG 649
>RGD|1308685 [details] [associations]
symbol:Ddx23 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 23"
species:10116 "Rattus norvegicus" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISO] [GO:0005682 "U5 snRNP"
evidence=IEA;ISO] [GO:0005739 "mitochondrion" evidence=IEA;ISO]
[GO:0005886 "plasma membrane" evidence=IEA;ISO] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISO] [GO:0071013
"catalytic step 2 spliceosome" evidence=IEA;ISO] [GO:0005730
"nucleolus" evidence=ISO] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 RGD:1308685 GO:GO:0005524
GO:GO:0003676 GeneTree:ENSGT00690000102171 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:CH474035 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 KO:K12858 CTD:9416 OMA:PIRNWKE
RefSeq:NP_001100263.2 UniGene:Rn.2319 Ensembl:ENSRNOT00000055529
GeneID:300208 KEGG:rno:300208 NextBio:646540 Uniprot:G3V9M1
Length = 819
Score = 513 (185.6 bits), Expect = 1.3e-80, Sum P(2) = 1.3e-80
Identities = 102/214 (47%), Positives = 146/214 (68%)
Query: 188 DFYQDSASISGMSEQDVMEYKKSLAIRVSGFDVPRPVKTFEDCGFSTQLMHAISKQGYEK 247
D + + M+++D +++ +I G +P P+++++D ++ I K GY++
Sbjct: 353 DRHWSQKKLDEMTDRDWRIFREDYSITTKGGKIPNPIRSWKDSSLPPHILEVIDKCGYKE 412
Query: 248 PTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQK----EEGPIGVI 303
PT IQ QA+PI L RDIIG+A+TGSGKTAAF++P++V I P++ + ++GP +I
Sbjct: 413 PTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLLVWITTLPKIDRIEESDQGPYAII 472
Query: 304 CAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDML 363
APTRELA QI ET KF K GIR AV GG+S+ DQ L+ GCEIVIATPGRLID+L
Sbjct: 473 LAPTRELAQQIEEETIKFGKPLGIRTVAVIGGISREDQGFRLRMGCEIVIATPGRLIDVL 532
Query: 364 KMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIV 397
+ + L +SR TY+VLDEADRM D+GFEP ++ I+
Sbjct: 533 ENRYLVLSRCTYVVLDEADRMIDMGFEPDVQKIL 566
Score = 349 (127.9 bits), Expect = 1.3e-80, Sum P(2) = 1.3e-80
Identities = 75/188 (39%), Positives = 116/188 (61%)
Query: 404 RQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEK 463
RQT++F+ATMP VE+LAR L P V +G G +E + Q V ++ S++EK LL
Sbjct: 599 RQTVMFTATMPPAVERLARSYLRRPAVVYIGSAGKPHERVEQKVFLM-SESEKRKKLLAI 657
Query: 464 LPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHV 523
L D +++F ++K D + L + G+ A LHG K Q R L K+G +
Sbjct: 658 LEQGFDP-PIIIFVNQKKGCDVLAKSLEKMGYNACTLHGGKGQEQREFALSNLKAGAKDI 716
Query: 524 LIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFA 583
L+ATDVA RG+DI+ + VVN+D+A++++ ++HRIGRTGRAG K G A T +T++++
Sbjct: 717 LVATDVAGRGIDIQDVSMVVNYDMAKNIEDYIHRIGRTGRAG-KSGVAITFLTKEDSAVF 775
Query: 584 GELVNSLI 591
EL +++
Sbjct: 776 YELKQAIL 783
Score = 37 (18.1 bits), Expect = 2.2e-27, Sum P(2) = 2.2e-27
Identities = 16/66 (24%), Positives = 32/66 (48%)
Query: 165 EKKKIEPIPALDHSLIDYEPFNKDFYQDSASISG-MSEQDVMEYKKSLAIRVSGFDVPRP 223
++K + A + + IDY P K+ +Q G ++ D+ + K+ + R G D+
Sbjct: 268 DRKFVFEWDASEDTSIDYNPLYKERHQVQLLGRGFIAGIDLKQQKREQS-RFYG-DLMEK 325
Query: 224 VKTFED 229
+T E+
Sbjct: 326 RRTLEE 331
>UNIPROTKB|A6QLB2 [details] [associations]
symbol:DDX23 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0005886 "plasma membrane" evidence=IEA] [GO:0005739
"mitochondrion" evidence=IEA] [GO:0005682 "U5 snRNP" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005739 GO:GO:0005886
GO:GO:0005524 GO:GO:0005682 GO:GO:0003676 GO:GO:0071013
GeneTree:ENSGT00690000102171 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K12858 CTD:9416 HOGENOM:HOG000268796
HOVERGEN:HBG102054 OMA:PIRNWKE OrthoDB:EOG46T312 EMBL:DAAA02012954
EMBL:BC147902 IPI:IPI00866828 RefSeq:NP_001095672.1
UniGene:Bt.14027 STRING:A6QLB2 Ensembl:ENSBTAT00000029071
GeneID:537395 KEGG:bta:537395 InParanoid:A6QLB2 NextBio:20877127
Uniprot:A6QLB2
Length = 820
Score = 513 (185.6 bits), Expect = 1.4e-80, Sum P(2) = 1.4e-80
Identities = 102/214 (47%), Positives = 146/214 (68%)
Query: 188 DFYQDSASISGMSEQDVMEYKKSLAIRVSGFDVPRPVKTFEDCGFSTQLMHAISKQGYEK 247
D + + M+++D +++ +I G +P P+++++D ++ I K GY++
Sbjct: 354 DRHWSQKKLDEMTDRDWRIFREDYSITTKGGKIPNPIRSWKDSSLPPHILEVIDKCGYKE 413
Query: 248 PTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQK----EEGPIGVI 303
PT IQ QA+PI L RDIIG+A+TGSGKTAAF++P++V I P++ + ++GP +I
Sbjct: 414 PTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLLVWITTLPKIDRIEESDQGPYAII 473
Query: 304 CAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDML 363
APTRELA QI ET KF K GIR AV GG+S+ DQ L+ GCEIVIATPGRLID+L
Sbjct: 474 LAPTRELAQQIEEETIKFGKPLGIRTVAVIGGISREDQGFRLRMGCEIVIATPGRLIDVL 533
Query: 364 KMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIV 397
+ + L +SR TY+VLDEADRM D+GFEP ++ I+
Sbjct: 534 ENRYLVLSRCTYVVLDEADRMIDMGFEPDVQKIL 567
Score = 349 (127.9 bits), Expect = 1.4e-80, Sum P(2) = 1.4e-80
Identities = 75/188 (39%), Positives = 116/188 (61%)
Query: 404 RQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEK 463
RQT++F+ATMP VE+LAR L P V +G G +E + Q V ++ S++EK LL
Sbjct: 600 RQTVMFTATMPPAVERLARSYLRRPAVVYIGSAGKPHERVEQKVFLM-SESEKRKKLLAI 658
Query: 464 LPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHV 523
L D +++F ++K D + L + G+ A LHG K Q R L K+G +
Sbjct: 659 LEQGFDP-PIIIFVNQKKGCDVLAKSLEKMGYNACTLHGGKGQEQREFALSNLKAGAKDI 717
Query: 524 LIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFA 583
L+ATDVA RG+DI+ + VVN+D+A++++ ++HRIGRTGRAG K G A T +T++++
Sbjct: 718 LVATDVAGRGIDIQDVSMVVNYDMAKNIEDYIHRIGRTGRAG-KSGVAITFLTKEDSAVF 776
Query: 584 GELVNSLI 591
EL +++
Sbjct: 777 YELKQAIL 784
Score = 37 (18.1 bits), Expect = 2.2e-27, Sum P(2) = 2.2e-27
Identities = 16/66 (24%), Positives = 32/66 (48%)
Query: 165 EKKKIEPIPALDHSLIDYEPFNKDFYQDSASISG-MSEQDVMEYKKSLAIRVSGFDVPRP 223
++K + A + + IDY P K+ +Q G ++ D+ + K+ + R G D+
Sbjct: 269 DRKFVFEWDASEDTSIDYNPLYKERHQVQLLGRGFIAGIDLKQQKREQS-RFYG-DLMEK 326
Query: 224 VKTFED 229
+T E+
Sbjct: 327 RRTLEE 332
>UNIPROTKB|E2RTL6 [details] [associations]
symbol:DDX23 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0005886 "plasma membrane" evidence=IEA]
[GO:0005739 "mitochondrion" evidence=IEA] [GO:0005682 "U5 snRNP"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005739
GO:GO:0005886 GO:GO:0005524 GO:GO:0005682 GO:GO:0003676
GO:GO:0071013 GeneTree:ENSGT00690000102171 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 KO:K12858 CTD:9416 OMA:PIRNWKE EMBL:AAEX03015077
RefSeq:XP_851051.1 ProteinModelPortal:E2RTL6
Ensembl:ENSCAFT00000013894 GeneID:477624 KEGG:cfa:477624
NextBio:20853071 Uniprot:E2RTL6
Length = 820
Score = 513 (185.6 bits), Expect = 1.4e-80, Sum P(2) = 1.4e-80
Identities = 102/214 (47%), Positives = 146/214 (68%)
Query: 188 DFYQDSASISGMSEQDVMEYKKSLAIRVSGFDVPRPVKTFEDCGFSTQLMHAISKQGYEK 247
D + + M+++D +++ +I G +P P+++++D ++ I K GY++
Sbjct: 354 DRHWSQKKLDEMTDRDWRIFREDYSITTKGGKIPNPIRSWKDSSLPPHILEVIDKCGYKE 413
Query: 248 PTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQK----EEGPIGVI 303
PT IQ QA+PI L RDIIG+A+TGSGKTAAF++P++V I P++ + ++GP +I
Sbjct: 414 PTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLLVWITTLPKIDRIEESDQGPYAII 473
Query: 304 CAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDML 363
APTRELA QI ET KF K GIR AV GG+S+ DQ L+ GCEIVIATPGRLID+L
Sbjct: 474 LAPTRELAQQIEEETIKFGKPLGIRTVAVIGGISREDQGFRLRMGCEIVIATPGRLIDVL 533
Query: 364 KMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIV 397
+ + L +SR TY+VLDEADRM D+GFEP ++ I+
Sbjct: 534 ENRYLVLSRCTYVVLDEADRMIDMGFEPDVQKIL 567
Score = 349 (127.9 bits), Expect = 1.4e-80, Sum P(2) = 1.4e-80
Identities = 75/188 (39%), Positives = 116/188 (61%)
Query: 404 RQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEK 463
RQT++F+ATMP VE+LAR L P V +G G +E + Q V ++ S++EK LL
Sbjct: 600 RQTVMFTATMPPAVERLARSYLRRPAVVYIGSAGKPHERVEQKVFLM-SESEKRKKLLAI 658
Query: 464 LPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHV 523
L D +++F ++K D + L + G+ A LHG K Q R L K+G +
Sbjct: 659 LEQGFDP-PIIIFVNQKKGCDVLAKSLEKMGYNACTLHGGKGQEQREFALSNLKAGAKDI 717
Query: 524 LIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFA 583
L+ATDVA RG+DI+ + VVN+D+A++++ ++HRIGRTGRAG K G A T +T++++
Sbjct: 718 LVATDVAGRGIDIQDVSMVVNYDMAKNIEDYIHRIGRTGRAG-KSGVAITFLTKEDSAVF 776
Query: 584 GELVNSLI 591
EL +++
Sbjct: 777 YELKQAIL 784
Score = 37 (18.1 bits), Expect = 2.2e-27, Sum P(2) = 2.2e-27
Identities = 16/66 (24%), Positives = 32/66 (48%)
Query: 165 EKKKIEPIPALDHSLIDYEPFNKDFYQDSASISG-MSEQDVMEYKKSLAIRVSGFDVPRP 223
++K + A + + IDY P K+ +Q G ++ D+ + K+ + R G D+
Sbjct: 269 DRKFVFEWDASEDTSIDYNPLYKERHQVQLLGRGFIAGIDLKQQKREQS-RFYG-DLMEK 326
Query: 224 VKTFED 229
+T E+
Sbjct: 327 RRTLEE 332
>UNIPROTKB|Q9BUQ8 [details] [associations]
symbol:DDX23 "Probable ATP-dependent RNA helicase DDX23"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0000375
"RNA splicing, via transesterification reactions" evidence=TAS]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IC;TAS]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0004004
"ATP-dependent RNA helicase activity" evidence=TAS] [GO:0000354
"cis assembly of pre-catalytic spliceosome" evidence=IC]
[GO:0005682 "U5 snRNP" evidence=IDA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IDA] [GO:0005654 "nucleoplasm"
evidence=TAS] [GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467
"gene expression" evidence=TAS] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0005739 "mitochondrion"
evidence=IDA] [GO:0005886 "plasma membrane" evidence=IDA]
Reactome:REACT_71 InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 EMBL:AF026402 GO:GO:0005739
GO:GO:0005886 GO:GO:0005524 GO:GO:0005654 Reactome:REACT_1675
GO:GO:0005682 GO:GO:0003676 EMBL:CH471111 GO:GO:0071013
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0000354
KO:K12858 EMBL:AK312379 EMBL:BC002366 IPI:IPI00006725
RefSeq:NP_004809.2 UniGene:Hs.130098 ProteinModelPortal:Q9BUQ8
SMR:Q9BUQ8 DIP:DIP-34974N IntAct:Q9BUQ8 MINT:MINT-1572793
STRING:Q9BUQ8 PhosphoSite:Q9BUQ8 DMDM:160385708 PaxDb:Q9BUQ8
PRIDE:Q9BUQ8 DNASU:9416 Ensembl:ENST00000308025 GeneID:9416
KEGG:hsa:9416 UCSC:uc001rsm.3 CTD:9416 GeneCards:GC12M049223
HGNC:HGNC:17347 HPA:HPA038680 MIM:612172 neXtProt:NX_Q9BUQ8
PharmGKB:PA134934941 HOGENOM:HOG000268796 HOVERGEN:HBG102054
InParanoid:Q9BUQ8 OMA:PIRNWKE OrthoDB:EOG46T312 PhylomeDB:Q9BUQ8
GenomeRNAi:9416 NextBio:35278 ArrayExpress:Q9BUQ8 Bgee:Q9BUQ8
CleanEx:HS_DDX23 Genevestigator:Q9BUQ8 GermOnline:ENSG00000174243
Uniprot:Q9BUQ8
Length = 820
Score = 513 (185.6 bits), Expect = 1.4e-80, Sum P(2) = 1.4e-80
Identities = 102/214 (47%), Positives = 146/214 (68%)
Query: 188 DFYQDSASISGMSEQDVMEYKKSLAIRVSGFDVPRPVKTFEDCGFSTQLMHAISKQGYEK 247
D + + M+++D +++ +I G +P P+++++D ++ I K GY++
Sbjct: 354 DRHWSQKKLDEMTDRDWRIFREDYSITTKGGKIPNPIRSWKDSSLPPHILEVIDKCGYKE 413
Query: 248 PTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQK----EEGPIGVI 303
PT IQ QA+PI L RDIIG+A+TGSGKTAAF++P++V I P++ + ++GP +I
Sbjct: 414 PTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLLVWITTLPKIDRIEESDQGPYAII 473
Query: 304 CAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDML 363
APTRELA QI ET KF K GIR AV GG+S+ DQ L+ GCEIVIATPGRLID+L
Sbjct: 474 LAPTRELAQQIEEETIKFGKPLGIRTVAVIGGISREDQGFRLRMGCEIVIATPGRLIDVL 533
Query: 364 KMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIV 397
+ + L +SR TY+VLDEADRM D+GFEP ++ I+
Sbjct: 534 ENRYLVLSRCTYVVLDEADRMIDMGFEPDVQKIL 567
Score = 349 (127.9 bits), Expect = 1.4e-80, Sum P(2) = 1.4e-80
Identities = 75/188 (39%), Positives = 116/188 (61%)
Query: 404 RQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEK 463
RQT++F+ATMP VE+LAR L P V +G G +E + Q V ++ S++EK LL
Sbjct: 600 RQTVMFTATMPPAVERLARSYLRRPAVVYIGSAGKPHERVEQKVFLM-SESEKRKKLLAI 658
Query: 464 LPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHV 523
L D +++F ++K D + L + G+ A LHG K Q R L K+G +
Sbjct: 659 LEQGFDP-PIIIFVNQKKGCDVLAKSLEKMGYNACTLHGGKGQEQREFALSNLKAGAKDI 717
Query: 524 LIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFA 583
L+ATDVA RG+DI+ + VVN+D+A++++ ++HRIGRTGRAG K G A T +T++++
Sbjct: 718 LVATDVAGRGIDIQDVSMVVNYDMAKNIEDYIHRIGRTGRAG-KSGVAITFLTKEDSAVF 776
Query: 584 GELVNSLI 591
EL +++
Sbjct: 777 YELKQAIL 784
Score = 37 (18.1 bits), Expect = 2.2e-27, Sum P(2) = 2.2e-27
Identities = 16/66 (24%), Positives = 32/66 (48%)
Query: 165 EKKKIEPIPALDHSLIDYEPFNKDFYQDSASISG-MSEQDVMEYKKSLAIRVSGFDVPRP 223
++K + A + + IDY P K+ +Q G ++ D+ + K+ + R G D+
Sbjct: 269 DRKFVFEWDASEDTSIDYNPLYKERHQVQLLGRGFIAGIDLKQQKREQS-RFYG-DLMEK 326
Query: 224 VKTFED 229
+T E+
Sbjct: 327 RRTLEE 332
>WB|WBGene00006888 [details] [associations]
symbol:vbh-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0040010 "positive regulation of
growth rate" evidence=IMP] [GO:0032502 "developmental process"
evidence=IMP] [GO:0040035 "hermaphrodite genitalia development"
evidence=IMP] [GO:0042006 "masculinization of hermaphroditic
germ-line" evidence=IMP] [GO:0042127 "regulation of cell
proliferation" evidence=IMP] [GO:0040020 "regulation of meiosis"
evidence=IMP] [GO:0007281 "germ cell development" evidence=IMP]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0043186 "P granule"
evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0009792
GO:GO:0040010 GO:GO:0003676 GO:GO:0042127 GO:GO:0040035
GO:GO:0007281 GO:GO:0040020 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0043186 GeneTree:ENSGT00620000087942
HOGENOM:HOG000268804 KO:K11594 OMA:DELLMEN EMBL:FO081614
GO:GO:0042006 RefSeq:NP_001021793.1 UniGene:Cel.16952
ProteinModelPortal:Q65XX1 SMR:Q65XX1 IntAct:Q65XX1
MINT:MINT-6669731 STRING:Q65XX1 PaxDb:Q65XX1 PRIDE:Q65XX1
EnsemblMetazoa:Y54E10A.9c.1 EnsemblMetazoa:Y54E10A.9c.2
GeneID:171888 KEGG:cel:CELE_Y54E10A.9 UCSC:Y54E10A.9a CTD:171888
WormBase:Y54E10A.9c InParanoid:Q65XX1 NextBio:873115
ArrayExpress:Q65XX1 Uniprot:Q65XX1
Length = 660
Score = 738 (264.8 bits), Expect = 2.2e-80, Sum P(3) = 2.2e-80
Identities = 166/417 (39%), Positives = 251/417 (60%)
Query: 209 KSLAIRVSGFDVPRPVKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGI 268
+++ + VSG VP ++ F + GF +M +++ GY KPT +Q ++P +L+ RD++
Sbjct: 123 ENIPVEVSGDSVPAAIEHFNEAGFGPAVMENVNRSGYSKPTPVQKHSIPTLLANRDLMSC 182
Query: 269 AKTGSGKTAAFVLPMIVHIM-DQPELQKEEG---------PIGVICAPTRELAHQIYLET 318
A+TGSGKTAAF+LP+I HI+ P++ K P ++ +PTRELA QI+ E
Sbjct: 183 AQTGSGKTAAFLLPIIQHILAGGPDMVKPPAFTNGRRTYYPCALVLSPTRELAIQIHKEA 242
Query: 319 KKFAKSHGIRVSAVYGGMSKL-DQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLV 377
KF+ I+ + +YGG DQ L+AG I+IATPGRLID+++ + ++ YLV
Sbjct: 243 TKFSYKSNIQTAILYGGRENYRDQVNRLRAGTHILIATPGRLIDIIEQGFIGLAGCRYLV 302
Query: 378 LDEADRMFDLGFEPQIRSIVGQIRPD---RQTLLFSATMPRKVEKLAREILSDP-VRVTV 433
LDEADRM D+GFEPQIR IVGQ P R T +FSAT P++++ LA++ L D + + V
Sbjct: 303 LDEADRMLDMGFEPQIRKIVGQGMPPKTARTTAMFSATFPKEIQVLAKDFLKDNYIFLAV 362
Query: 434 GEVGMANEDITQVVHVIPSDAEKLPWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQK 493
G VG +E+I Q + + ++ EK L+E L + VLVF K +E+ L ++
Sbjct: 363 GRVGSTSENIEQRLLWV-NEMEKRSNLMEILMNEHSENLVLVFVETKRGANELAYFLNRQ 421
Query: 494 GFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVNFDIARDMDM 553
++ ++HGD Q R L+ F+SG +L+AT VAARGLDI +++ V+N+D+ D D
Sbjct: 422 QIRSVSIHGDLKQIERERNLELFRSGQCPILVATAVAARGLDIPNVRHVINYDLPGDSDE 481
Query: 554 HVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELVNSLIAAGQNVSMELMDLAMKDGR 610
+VHRIGRTGR G+ G A + K +L N ++ + Q V L +A +GR
Sbjct: 482 YVHRIGRTGRCGNL-GIATSFFNDKNRGIGRDLKNLIVESNQEVPEWLHQVAA-EGR 536
Score = 62 (26.9 bits), Expect = 2.2e-80, Sum P(3) = 2.2e-80
Identities = 14/32 (43%), Positives = 18/32 (56%)
Query: 712 GGSIGGDVNGTQTTGLTG-FVSGGSIGGEMSG 742
GGS GG+ + + G TG F SG + GG G
Sbjct: 560 GGSFGGNFSNYNSGGATGGFGSGPAYGGSFGG 591
Score = 53 (23.7 bits), Expect = 1.9e-79, Sum P(3) = 1.9e-79
Identities = 14/37 (37%), Positives = 16/37 (43%)
Query: 705 ALRGFVSGGSIGGDVNGTQTTGLTGFVSGGSIGGEMS 741
A G + GG GG+ T G GGS GG S
Sbjct: 532 AAEGRIGGGQRGGNRRFGATDYRVGRGGGGSFGGNFS 568
Score = 45 (20.9 bits), Expect = 1.3e-78, Sum P(3) = 1.3e-78
Identities = 18/55 (32%), Positives = 23/55 (41%)
Query: 692 FNNSASAYANKRPALRGFVSGGSIGGDVNGTQTTGLTGFVSGGSIGGEMSGTQTT 746
F + S Y N A GF SG + GG G F +GG G S + T+
Sbjct: 563 FGGNFSNY-NSGGATGGFGSGPAYGGSFGGGAPR--RPFTNGG-FGAHSSLSSTS 613
Score = 41 (19.5 bits), Expect = 3.5e-78, Sum P(3) = 3.5e-78
Identities = 15/54 (27%), Positives = 21/54 (38%)
Query: 689 SEGFNNSASAYANKRPALRGFVSGGSIGGDVNGTQTTGLTGFVSGGSIGGEMSG 742
+EG N+R + G GG G + + SGG+ GG SG
Sbjct: 533 AEGRIGGGQRGGNRRFGATDYRVGRGGGGSFGGN----FSNYNSGGATGGFGSG 582
Score = 39 (18.8 bits), Expect = 2.2e-80, Sum P(3) = 2.2e-80
Identities = 13/37 (35%), Positives = 20/37 (54%)
Query: 38 YSHDNYEDTDLDNIDYEDNDAAKAAND-TGNGAEKEE 73
YS +N+E+ D +N N+ A + N NGAE +
Sbjct: 62 YS-ENFENFD-ENGSSGYNNFADSGNGFNNNGAESNQ 96
>DICTYBASE|DDB_G0293064 [details] [associations]
symbol:DDB_G0293064 species:44689 "Dictyostelium
discoideum" [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 dictyBase:DDB_G0293064 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 EMBL:AAFI02000199
RefSeq:XP_629301.1 ProteinModelPortal:Q54CB8
EnsemblProtists:DDB0191757 GeneID:8629024 KEGG:ddi:DDB_G0293064
InParanoid:Q54CB8 OMA:VLYWSAT Uniprot:Q54CB8
Length = 573
Score = 772 (276.8 bits), Expect = 1.2e-79, Sum P(2) = 1.2e-79
Identities = 163/417 (39%), Positives = 255/417 (61%)
Query: 201 EQDVMEYKKSLAIRV---SGFDVPRPVKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALP 257
+Q+ M++ K I + + F +P+P+ T E F + + + +SK+ +EKPT +Q P
Sbjct: 113 QQETMDFIKEFEISIKKENNFYLPKPIDTIESVPFQSTIKNFLSKK-FEKPTPVQSLGWP 171
Query: 258 IILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLE 317
I LSG D++GI+KTGSGKT +F+LP I HI+ QP GP ++ APTRELA+QI E
Sbjct: 172 IALSGSDMLGISKTGSGKTLSFILPAIEHILAQPRQSYYPGPSVLVVAPTRELANQINQE 231
Query: 318 TKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLV 377
+++ + I ++ +YGG + Q +L +IV+ TPGR+ID ++ L++ +++LV
Sbjct: 232 AEQYLRLVNIEIATIYGGAPRRSQQLQLSRRPKIVVGTPGRIIDFMESGDLSLKNISFLV 291
Query: 378 LDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVG 437
+DEADR+ ++GFE QI I IRPDRQ L +SAT P+KV A + + P+R+ +G
Sbjct: 292 VDEADRLMEMGFEQQIDGIFNSIRPDRQVLYWSATWPKKVSSFAEKHIRTPIRLQIGSSQ 351
Query: 438 M-ANEDITQVVHVIPSDAEKLPWLLEKLPGMIDDGD----VLVFASKKTTVDEIESQLAQ 492
+ AN++I+Q ++P+DA+K+ L++ L G I D L+F K D ++ +
Sbjct: 352 LTANKNISQKFKIVPTDADKVDALMDTL-GEIYSADEKAQTLIFTMTKKGADTLKHYIQS 410
Query: 493 KG--FKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVNFDIARD 550
G + LHGD DQ R I+Q FK+ +++ATDVA+RGLDIK I V+NF + D
Sbjct: 411 NGDNVRIDTLHGDVDQNRRERIVQDFKNKRLDIVVATDVASRGLDIKGISHVINFSLPSD 470
Query: 551 MDMHVHRIGRTGRAGDKDGTAYTLVTQK---EARFAGELVNSLIAAGQNVSMELMDL 604
+ +VHRIGRTGRAG GT++++++ + G+L N L + Q V E +D+
Sbjct: 471 CETYVHRIGRTGRAGAL-GTSHSILSNNSLDDMELVGDLTNLLQRSEQEVPSEFLDI 526
Score = 47 (21.6 bits), Expect = 1.2e-79, Sum P(2) = 1.2e-79
Identities = 24/79 (30%), Positives = 33/79 (41%)
Query: 666 NSLKTGMMTQFRSNFVAASSN-TPSEGFNNSASAYANKRPALRGFVSGG-SIGGDVNGTQ 723
NSL + +N + S PSE + +A R ++G GG + GG NG
Sbjct: 497 NSLDDMELVGDLTNLLQRSEQEVPSEFLDINA---IRNRQNMKGGNGGGRNGGGGRNGGG 553
Query: 724 TTGLTGFVSGGSIGGEMSG 742
G G GG+ GG G
Sbjct: 554 RNG--GGNRGGNRGGNYGG 570
>UNIPROTKB|D3IVZ2 [details] [associations]
symbol:DDX3Y "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 HOGENOM:HOG000268804 EMBL:DAAA02075532
EMBL:GQ259590 IPI:IPI00955537 UniGene:Bt.89461
Ensembl:ENSBTAT00000065838 OMA:MSHEAVK Uniprot:D3IVZ2
Length = 661
Score = 753 (270.1 bits), Expect = 1.5e-79, Sum P(3) = 1.5e-79
Identities = 168/412 (40%), Positives = 249/412 (60%)
Query: 211 LAIRVSGFDVPRPVKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAK 270
+ + V+G + P +++F D +M I Y +PT +Q A+PII RD++ A+
Sbjct: 166 IPVEVTGNNCPPHIESFSDVAMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQ 225
Query: 271 TGSGKTAAFVLPMIVHIM-DQP----ELQKEEG--------PIGVICAPTRELAHQIYLE 317
TGSGKTAAF+LP++ I D P + KE G PI ++ APTRELA QIY E
Sbjct: 226 TGSGKTAAFLLPILSQIYTDGPGEALKAVKESGRYGRRKQYPISLVLAPTRELAVQIYEE 285
Query: 318 TKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLV 377
+KF+ + VYGG Q ++L+ GC +++ATPGRL+DM++ + + YLV
Sbjct: 286 ARKFSYRSRVLPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLV 345
Query: 378 LDEADRMFDLGFEPQIRSIVGQ--IRPD--RQTLLFSATMPRKVEKLAREILSDPVRVTV 433
LDEADRM D+GFEPQIR I+ Q + P R T++FSAT P++++ LAR+ L + + + V
Sbjct: 346 LDEADRMLDMGFEPQIRRIIEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAV 405
Query: 434 GEVGMANEDITQVVHVIPSDAEKLPWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQK 493
G VG +E+ITQ V V +A+K +LL+ L D LVF K D +E L +
Sbjct: 406 GRVGSTSENITQKV-VWVEEADKRSFLLDLLNATGTDSLTLVFVETKKGADSLEDFLYHE 464
Query: 494 GFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVNFDIARDMDM 553
G+ ++HGD+ Q R E L +F+SG +L+AT VAARGLDI ++K V+NFD+ D++
Sbjct: 465 GYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPGDIEE 524
Query: 554 HVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELVNSLIAAGQNVSMELMDLA 605
+VHRIGRTGR G+ G A + ++ + +L++ L+ A Q V L ++A
Sbjct: 525 YVHRIGRTGRVGNL-GLATSFFNERNINISKDLLDLLVEAKQEVPSWLENMA 575
Score = 39 (18.8 bits), Expect = 1.5e-79, Sum P(3) = 1.5e-79
Identities = 9/26 (34%), Positives = 13/26 (50%)
Query: 12 NINRQTSYSFEQSQAPQRLYVPPSSR 37
N+N + S S A + Y+PP R
Sbjct: 20 NLNSDNNQSGGGSTASKGRYIPPHLR 45
Score = 39 (18.8 bits), Expect = 1.5e-79, Sum P(3) = 1.5e-79
Identities = 12/32 (37%), Positives = 13/32 (40%)
Query: 711 SGGSIGGDVNGTQT-TGLTGFVSGGSIGGEMS 741
SGG G G +G GF S GG S
Sbjct: 621 SGGGAHGSSRGFGGGSGYGGFYSSEGYGGNYS 652
>ZFIN|ZDB-GENE-030131-6215 [details] [associations]
symbol:ddx23 "DEAD (Asp-Glu-Ala-Asp) box
polypeptide 23" species:7955 "Danio rerio" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 ZFIN:ZDB-GENE-030131-6215
GO:GO:0005524 GO:GO:0003676 GeneTree:ENSGT00690000102171
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 KO:K12858
CTD:9416 HOGENOM:HOG000268796 HOVERGEN:HBG102054 OrthoDB:EOG46T312
EMBL:CR936486 EMBL:CR354537 EMBL:BC060524 IPI:IPI00509665
RefSeq:NP_956176.1 UniGene:Dr.78688 STRING:Q6P9Z2
Ensembl:ENSDART00000019620 GeneID:334283 KEGG:dre:334283
InParanoid:Q6P9Z2 NextBio:20810336 Uniprot:Q6P9Z2
Length = 807
Score = 506 (183.2 bits), Expect = 1.8e-79, Sum P(2) = 1.8e-79
Identities = 102/217 (47%), Positives = 145/217 (66%)
Query: 188 DFYQDSASISGMSEQDVMEYKKSLAIRVSGFDVPRPVKTFEDCGFSTQLMHAISKQGYEK 247
D + + M+++D +++ +I G +P P++ +++ ++ I K GY+
Sbjct: 341 DRHWSQKKLDEMTDRDWRIFREDYSITTKGGKIPNPIRNWKEYSLPPHILEVIEKCGYKD 400
Query: 248 PTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQK----EEGPIGVI 303
PT IQ QA+PI L RDIIG+A+TGSGKTAAF++P++V I P++ + ++GP +I
Sbjct: 401 PTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLLVWITTLPKIDRIEDSDQGPYAII 460
Query: 304 CAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDML 363
APTRELA QI ET KF K GIR AV GG+S+ DQ L+ GCEIVIATPGRLID+L
Sbjct: 461 LAPTRELAQQIEEETIKFGKPLGIRTVAVIGGISREDQGFRLRMGCEIVIATPGRLIDVL 520
Query: 364 KMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQI 400
+ + L +SR TY+VLDEADRM D+GFEP ++ I+ I
Sbjct: 521 ENRYLVLSRCTYVVLDEADRMIDMGFEPDVQKILEYI 557
Score = 349 (127.9 bits), Expect = 1.8e-79, Sum P(2) = 1.8e-79
Identities = 73/188 (38%), Positives = 116/188 (61%)
Query: 404 RQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEK 463
RQT++F+ATMP VE+LAR L P V +G G +E + Q V ++ S+ EK LLE
Sbjct: 587 RQTVMFTATMPPAVERLARSYLRRPAVVYIGSAGKPHERVEQKV-ILMSEGEKRKKLLEV 645
Query: 464 LPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHV 523
L + +++F ++K D + L + G+ A LHG K Q R L K+G +
Sbjct: 646 LASGFEP-PIIIFVNQKKGCDVLAKSLEKMGYNACTLHGGKGQEQREFALSNLKAGAKDI 704
Query: 524 LIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFA 583
L+ATDVA RG+DI+ + V+N+D+A++++ ++HRIGRTGRAG K G A T +T++++
Sbjct: 705 LVATDVAGRGIDIQDVSMVLNYDMAKNIEDYIHRIGRTGRAG-KSGVAMTFLTKEDSSVF 763
Query: 584 GELVNSLI 591
+L +++
Sbjct: 764 YDLKQAIL 771
>UNIPROTKB|E9PT29 [details] [associations]
symbol:Ddx17 "Protein Ddx17" species:10116 "Rattus
norvegicus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 GO:GO:0009791 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00660000095174 GO:GO:0072358 IPI:IPI00858352
PRIDE:E9PT29 Ensembl:ENSRNOT00000018185 Uniprot:E9PT29
Length = 651
Score = 793 (284.2 bits), Expect = 6.8e-79, P = 6.8e-79
Identities = 180/431 (41%), Positives = 257/431 (59%)
Query: 179 LIDYEPFNKDFYQDSASISGMSEQDVMEYKKSLAIRVSGFDV-PRPVKTFEDCGFSTQLM 237
L + F K+FY + ++ ++ +V E ++ I V G DV P+PV F F +M
Sbjct: 45 LSELPKFEKNFYVEHPEVARLTPYEVDELRRKKEITVRGGDVCPKPVFAFHHANFPQYVM 104
Query: 238 HAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEE 297
+ Q + +PT IQCQ P+ LSGRD++GIA+TGSGKT A++LP IVHI QP L++ +
Sbjct: 105 DVLMDQHFTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAYLLPAIVHINHQPYLERGD 164
Query: 298 GPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGC-EIVIATP 356
GPI V P +Y F + G S Q E + C EI IATP
Sbjct: 165 GPI-VSVLPFFSTLFSVYRGGTDFKFKCSSLFWVCFLGQSLKGQRLEWLSQCVEICIATP 223
Query: 357 GRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMPRK 416
GR ID L+ + R TYLVLDEADRM D+GFEPQIR IV QIRPDRQTL++SAT P++
Sbjct: 224 GR-IDFLESGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKE 282
Query: 417 VEKLAREILSDPVRVTVGEVGM-ANEDITQVVHV-IPSDAE-KLPWLLEKLPGMIDDGDV 473
V +LA + L D ++ VG + + AN +I Q+V V + S+ + KL L+E++ +
Sbjct: 283 VRQLAEDFLRDYTQINVGNLELSANHNILQIVDVCMESEKDHKLIQLMEEIMAE-KENKT 341
Query: 474 LVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARG 533
++F K D++ ++ + G+ A +HGDK Q R +L +F+SG +LIATDVA+RG
Sbjct: 342 IIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPILIATDVASRG 401
Query: 534 LDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELVNSLIAA 593
LD++ +K V+N+D + +VHRIGRT R+ +K GTAYT T + A EL+ L A
Sbjct: 402 LDVEDVKFVINYDYPNSSEDYVHRIGRTARSTNK-GTAYTFFTPGNLKQARELIKVLEEA 460
Query: 594 GQNVSMELMDL 604
Q ++ +LM L
Sbjct: 461 NQAINPKLMQL 471
>FB|FBgn0015331 [details] [associations]
symbol:abs "abstrakt" species:7227 "Drosophila melanogaster"
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=NAS]
[GO:0004386 "helicase activity" evidence=ISS] [GO:0030010
"establishment of cell polarity" evidence=NAS] [GO:0007399 "nervous
system development" evidence=NAS] [GO:0005634 "nucleus"
evidence=NAS] [GO:0009653 "anatomical structure morphogenesis"
evidence=NAS] [GO:0006915 "apoptotic process" evidence=NAS]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC] [GO:0071011 "precatalytic spliceosome" evidence=IDA]
InterPro:IPR001650 InterPro:IPR001878 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS50158
PROSITE:PS51194 SMART:SM00343 SMART:SM00490 EMBL:AE014297
GO:GO:0005524 GO:GO:0046872 GO:GO:0008270 GO:GO:0003723
GO:GO:0004386 GO:GO:0071011 GO:GO:0000398 GO:GO:0071013
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 KO:K13116 EMBL:AF212866 EMBL:AF187729
EMBL:AY051752 RefSeq:NP_524220.1 UniGene:Dm.3300
ProteinModelPortal:Q9V3C0 SMR:Q9V3C0 DIP:DIP-21861N IntAct:Q9V3C0
MINT:MINT-341079 STRING:Q9V3C0 PaxDb:Q9V3C0 PRIDE:Q9V3C0
EnsemblMetazoa:FBtr0078967 GeneID:40530 KEGG:dme:Dmel_CG14637
UCSC:CG14637-RA CTD:40530 FlyBase:FBgn0015331 InParanoid:Q9V3C0
OMA:KDQEERS OrthoDB:EOG4KWH7Z PhylomeDB:Q9V3C0 GenomeRNAi:40530
NextBio:819209 Bgee:Q9V3C0 GermOnline:CG14637 Uniprot:Q9V3C0
Length = 619
Score = 767 (275.1 bits), Expect = 1.7e-78, Sum P(2) = 1.7e-78
Identities = 179/453 (39%), Positives = 261/453 (57%)
Query: 163 VVEKKKIEPIPALDHSLIDYEPFNKDFYQDSASISGMSEQDVMEYKKSLAIRVSGFDVPR 222
+ ++K + + L I YE K ++ I MSE++ + L I V G
Sbjct: 116 IAQQKALMGVAELAKG-IQYEQPIKTAWKPPRYIREMSEEEREAVRHELRILVEGETPSP 174
Query: 223 PVKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLP 282
P+++F + F +++ ++ +G + PT IQ Q LP +L+GRD+IGIA TGSGKT FVLP
Sbjct: 175 PIRSFREMKFPKGILNGLAAKGIKNPTPIQVQGLPTVLAGRDLIGIAFTGSGKTLVFVLP 234
Query: 283 MIVHIMDQP---ELQKEEGPIGVICAPTRELA---HQIYLETKKFAKSHG---IRVSAVY 333
+I+ ++Q ++ EGP G+I P+RELA H+I K ++ G IR
Sbjct: 235 VIMFALEQEYSLPFERNEGPYGLIICPSRELAKQTHEIIQHYSKHLQACGMPEIRSCLAM 294
Query: 334 GGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQI 393
GG+ + + G IV+ATPGRL+DML K LT+ YL +DEADRM D+GFE +
Sbjct: 295 GGLPVSEALDVISRGVHIVVATPGRLMDMLDKKILTLDMCRYLCMDEADRMIDMGFEEDV 354
Query: 394 RSIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSD 453
R+I + RQTLLFSATMP+K++ AR L PV + VG G A+ ++TQ V + +
Sbjct: 355 RTIFSFFKGQRQTLLFSATMPKKIQNFARSALVKPVTINVGRAGAASMNVTQQVEYVKQE 414
Query: 454 AEKLPWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEIL 513
A K+ +LL+ L VL+FA KK VD I L KG +A A+HG KDQ R +
Sbjct: 415 A-KVVYLLDCLQKTAPP--VLIFAEKKQDVDCIHEYLLLKGVEAVAIHGGKDQEERSRAV 471
Query: 514 QKFKSGVYHVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYT 573
++ G VL+ATDVA++GLD +++ V+N+D+ D++ +VHRIGRTGR+ K G A T
Sbjct: 472 DAYRVGKKDVLVATDVASKGLDFPNVQHVINYDMPDDIENYVHRIGRTGRSNTK-GLATT 530
Query: 574 LVTQK-EARFAGELVNSLIAAGQNVSMELMDLA 605
L+ + E +L + LI Q V L +LA
Sbjct: 531 LINKTTEQSVLLDLKHLLIEGKQEVPDFLDELA 563
Score = 41 (19.5 bits), Expect = 1.7e-78, Sum P(2) = 1.7e-78
Identities = 9/17 (52%), Positives = 11/17 (64%)
Query: 37 RYSHDNYEDTDLDNIDY 53
R S + E+ DLDN DY
Sbjct: 8 RRSSKSSEEGDLDNEDY 24
>SGD|S000003046 [details] [associations]
symbol:DBP3 "RNA-Dependent ATPase, member of DExD/H-box
family" species:4932 "Saccharomyces cerevisiae" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=IDA] [GO:0005730
"nucleolus" evidence=IEA;IDA] [GO:0030687 "preribosome, large
subunit precursor" evidence=IDA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006364 "rRNA
processing" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0042254 "ribosome biogenesis" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0008186 "RNA-dependent ATPase activity" evidence=IDA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000464
"endonucleolytic cleavage in ITS1 upstream of 5.8S rRNA from
tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=IMP] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 SGD:S000003046 GO:GO:0005524
GO:GO:0005730 EMBL:BK006941 GO:GO:0003723 GO:GO:0030687
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268804 KO:K14811 OrthoDB:EOG42JS0S EMBL:M80437
EMBL:Z72600 PIR:S30805 RefSeq:NP_011437.3 RefSeq:NP_011442.3
ProteinModelPortal:P20447 SMR:P20447 DIP:DIP-2668N IntAct:P20447
MINT:MINT-1164200 STRING:P20447 PaxDb:P20447 PeptideAtlas:P20447
EnsemblFungi:YGL078C GeneID:852802 GeneID:852806 KEGG:sce:YGL073W
KEGG:sce:YGL078C CYGD:YGL078c GeneTree:ENSGT00680000100003
KO:K09419 OMA:EEEWPEK NextBio:972321 Genevestigator:P20447
GermOnline:YGL078C GO:GO:0000464 Uniprot:P20447
Length = 523
Score = 788 (282.4 bits), Expect = 2.3e-78, P = 2.3e-78
Identities = 180/423 (42%), Positives = 266/423 (62%)
Query: 188 DFYQDSASISGMSEQDVMEYKKSLAIRVS-GFDVP-RPVKTFEDCGFSTQLMHAISKQGY 245
+FY S +++ + + D+ EY K I V D+ RP+ +F+ + + ISK +
Sbjct: 75 EFYVQSEALTSLPQSDIDEYFKENEIAVEDSLDLALRPLLSFDYLSLDSSIQAEISK--F 132
Query: 246 EKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICA 305
KPT IQ A P +LSG+D++G+A+TGSGKT AF +P I H+M+ QK+ G ++ +
Sbjct: 133 PKPTPIQAVAWPYLLSGKDVVGVAETGSGKTFAFGVPAISHLMND---QKKRGIQVLVIS 189
Query: 306 PTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKM 365
PTRELA QIY G++ VYGG+ K +Q +LK ++V+ATPGRL+D+L+
Sbjct: 190 PTRELASQIYDNLIVLTDKVGMQCCCVYGGVPKDEQRIQLKKS-QVVVATPGRLLDLLQE 248
Query: 366 KALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPD-RQTLLFSATMPRKVEKLAREI 424
++ +S+V YLVLDEADRM + GFE I++I+ + RQTL+F+AT P++V +LA
Sbjct: 249 GSVDLSQVNYLVLDEADRMLEKGFEEDIKNIIRETDASKRQTLMFTATWPKEVRELASTF 308
Query: 425 LSDPVRVTVGEVGM--ANEDITQVVHVI-PSDAE-KLPWLLEKL-PGMIDDGDVLVFASK 479
+++P++V++G AN+ ITQ+V V+ P E KL LL+K G + VL+FA
Sbjct: 309 MNNPIKVSIGNTDQLTANKRITQIVEVVDPRGKERKLLELLKKYHSGPKKNEKVLIFALY 368
Query: 480 KTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSI 539
K +E L G+ AA+HGD Q R + L +FKSG ++L+ATDVAARGLDI ++
Sbjct: 369 KKEAARVERNLKYNGYNVAAIHGDLSQQQRTQALNEFKSGKSNLLLATDVAARGLDIPNV 428
Query: 540 KSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELVNSLIAAGQNVSM 599
K+V+N ++ +VHRIGRTGRAG + GTA+TL T++E AG LVN L A Q V
Sbjct: 429 KTVINLTFPLTVEDYVHRIGRTGRAG-QTGTAHTLFTEQEKHLAGGLVNVLNGANQPVPE 487
Query: 600 ELM 602
+L+
Sbjct: 488 DLI 490
>DICTYBASE|DDB_G0283661 [details] [associations]
symbol:ddx3 "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=ISS] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0006413 "translational initiation" evidence=IEA] [GO:0006412
"translation" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0003743 "translation initiation factor activity" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0044351 "macropinocytosis" evidence=RCA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 dictyBase:DDB_G0283661 GO:GO:0005524 GO:GO:0005737
EMBL:AAFI02000056 GenomeReviews:CM000153_GR GO:GO:0006397
GO:GO:0003743 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K11594 HSSP:P09052 RefSeq:XP_638950.1 ProteinModelPortal:Q54QS3
SMR:Q54QS3 PRIDE:Q54QS3 EnsemblProtists:DDB0233447 GeneID:8624189
KEGG:ddi:DDB_G0283661 OMA:SEHICAP Uniprot:Q54QS3
Length = 712
Score = 727 (261.0 bits), Expect = 2.7e-78, Sum P(3) = 2.7e-78
Identities = 164/391 (41%), Positives = 236/391 (60%)
Query: 223 PVKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLP 282
P+ +F D L+ I Y KPT +Q ALPIIL RD++ A+TGSGKTAAF+ P
Sbjct: 245 PLNSFADVDLGDVLLGNIKHAKYTKPTPVQKSALPIILKNRDLMACAQTGSGKTAAFLFP 304
Query: 283 MIVHIM-D---------QPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAV 332
+I I+ D +P + + P ++ APTRELA QI+ E KF S+G VS+V
Sbjct: 305 IISGILLDGAPEAPPAYKPGVPRAACPRALVLAPTRELAQQIFDEANKF--SYGSPVSSV 362
Query: 333 --YGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFE 390
YGG Q EL GC+I++AT GRL+D+L +++S++ YLVLDEADRM D+GFE
Sbjct: 363 VIYGGAEVFHQINELDRGCDILVATTGRLVDLLMRGRVSLSKIKYLVLDEADRMLDMGFE 422
Query: 391 PQIRSIVGQI-RP---DRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQV 446
PQIR I+ + P DRQTL+FSAT P++++ LA + L + + + VG VG ++ITQ
Sbjct: 423 PQIRQIISEFDMPGCRDRQTLMFSATFPKQIQNLAADFLYNYIFLKVGVVG-TTQNITQR 481
Query: 447 VHVIPSDAEKLPWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQ 506
+ + + +K +LL+ L G+ DG L+F K + D + L Q+ F +HGD Q
Sbjct: 482 IEYVVEE-DKNSYLLDYLSGLKSDGLCLIFVETKRSCDTLTYFLNQRNFPTTCIHGDLTQ 540
Query: 507 ASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGD 566
R LQ F+S L+ATD+A+RGL I ++ V+NFD+ D+ ++VHRIGRTGRAG
Sbjct: 541 PERENALQSFRSFATPFLVATDIASRGLHIGNVNLVINFDLPTDIHIYVHRIGRTGRAGK 600
Query: 567 KDGTAYTLVTQKEARFAGELVNSLIAAGQNV 597
K G A + +K EL+ + A+ Q++
Sbjct: 601 K-GLAISFFNEKNKPVGAELLKLMKASNQDI 630
Score = 47 (21.6 bits), Expect = 2.7e-78, Sum P(3) = 2.7e-78
Identities = 14/40 (35%), Positives = 19/40 (47%)
Query: 14 NRQTSYSFEQSQAPQRLYVPPSSRYSHDNYEDTDLDNIDY 53
N T+ + Q+ P YVPPS R +N + D DY
Sbjct: 31 NNNTTTTTTQTSEP---YVPPSRRNKMNNSSGSSRD--DY 65
Score = 45 (20.9 bits), Expect = 2.7e-78, Sum P(3) = 2.7e-78
Identities = 19/65 (29%), Positives = 33/65 (50%)
Query: 654 SSQSVPSR-SAAVNSLKTGMMTQFRSNFVAASSNTPSEGFNNSASAYANKRPALRGFVSG 712
S+Q +P V++L+ M++ SN + SN+P FN S +++ N+ G+ G
Sbjct: 626 SNQDIPDWFEKMVHNLR---MSKGPSN---SKSNSP---FNKSYNSHHNRDDNRGGYGGG 676
Query: 713 GSIGG 717
G G
Sbjct: 677 GGGNG 681
>UNIPROTKB|F1NVJ6 [details] [associations]
symbol:DDX43 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR001650 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR011545 Pfam:PF00013 Pfam:PF00270
Pfam:PF00271 PROSITE:PS50084 PROSITE:PS51194 SMART:SM00322
SMART:SM00490 GO:GO:0005524 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00660000095174 OMA:VLDITHV
EMBL:AADN02002507 EMBL:AADN02002508 IPI:IPI00594090
Ensembl:ENSGALT00000025673 Uniprot:F1NVJ6
Length = 642
Score = 787 (282.1 bits), Expect = 3.0e-78, P = 3.0e-78
Identities = 175/435 (40%), Positives = 261/435 (60%)
Query: 181 DYEPFNKDFYQDSASISGMSEQDVMEYKKS----LAIRVSGFD---VPRPVKTFEDCGFS 233
D P K+FY++S+ + MS ++V ++K + + + +P PV FED F
Sbjct: 188 DLPPIEKNFYKESSRTACMSPEEVELWRKENNNIICDDLKEGEKRCIPNPVCKFEDV-FE 246
Query: 234 T--QLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQP 291
+M I K G++KPT IQ QA PIIL G D+IGIA+TG+GKT A+++P +H+ QP
Sbjct: 247 QYPDIMANIRKTGFQKPTPIQSQAWPIILQGIDLIGIAQTGTGKTLAYLMPGFIHLASQP 306
Query: 292 -ELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCE 350
K GP ++ APTRELA Q+ E K+ G + +YGG + Q + G +
Sbjct: 307 IPKDKRGGPGMLVLAPTRELALQVEAECLKYTYK-GFKSICIYGGGDRKAQINVVTKGVD 365
Query: 351 IVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFS 410
IVIATPGRL D+ + + +TYL +EADRM D+GFEPQI I+ +RPDRQT++ S
Sbjct: 366 IVIATPGRLNDLQMNNFINLKSITYLA-NEADRMLDMGFEPQIMKILIDVRPDRQTVMMS 424
Query: 411 ATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEKLPGMIDD 470
AT P V +LA+ L +P+ V VG + +A + + ++ ++ EK ++ + M
Sbjct: 425 ATWPDGVRRLAKSYLRNPMIVYVGTLDLAAVNTVEQKVIVINEEEKKAFMENFIDSMKPK 484
Query: 471 GDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVA 530
++F KK+T D+I S L +G +LHGD++Q R + L FK G +L+ATD+A
Sbjct: 485 DKAIIFVGKKSTADDIASDLGVQGVPVQSLHGDREQCDREQALDDFKKGKVRILVATDLA 544
Query: 531 ARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELVNSL 590
+RGLD+ I V NFD R+++ +VHR+GRTGRAG + G A TL+T+K+ + A EL++ L
Sbjct: 545 SRGLDVHDITHVFNFDFPRNIEEYVHRVGRTGRAG-RTGKAVTLITKKDWKAASELIDIL 603
Query: 591 IAAGQNVSMELMDLA 605
A Q V EL+ +A
Sbjct: 604 QRAKQVVPDELISMA 618
>FB|FBgn0032690 [details] [associations]
symbol:CG10333 species:7227 "Drosophila melanogaster"
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IC;ISS]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0005681 "spliceosomal complex" evidence=ISS] [GO:0030532 "small
nuclear ribonucleoprotein complex" evidence=ISS] [GO:0005682 "U5
snRNP" evidence=ISS] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0071011
"precatalytic spliceosome" evidence=IDA] [GO:0071013 "catalytic
step 2 spliceosome" evidence=IDA] [GO:0022008 "neurogenesis"
evidence=IMP] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:AE014134
GO:GO:0022008 GO:GO:0005682 GO:GO:0003676 GO:GO:0071011
GO:GO:0000398 GO:GO:0071013 GeneTree:ENSGT00690000102171
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
InterPro:IPR014014 PROSITE:PS51195 KO:K12858 HSSP:Q58083
OMA:PIRNWKE FlyBase:FBgn0032690 EMBL:BT021222 RefSeq:NP_609888.2
UniGene:Dm.456 SMR:Q9VJ74 STRING:Q9VJ74 EnsemblMetazoa:FBtr0081072
GeneID:35112 KEGG:dme:Dmel_CG10333 UCSC:CG10333-RA
InParanoid:Q9VJ74 GenomeRNAi:35112 NextBio:791924 Uniprot:Q9VJ74
Length = 822
Score = 499 (180.7 bits), Expect = 4.5e-78, Sum P(3) = 4.5e-78
Identities = 98/216 (45%), Positives = 148/216 (68%)
Query: 199 MSEQDVMEYKKSLAIRVSGFDVPRPVKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPI 258
M+E+D +++ + + G +P P++++ + GF +++ I K GY++PT IQ QA+PI
Sbjct: 368 MTERDWRIFREDYNVTIKGGRIPNPIRSWNESGFPKEIIDIIDKVGYKEPTPIQRQAIPI 427
Query: 259 ILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQK----EEGPIGVICAPTRELAHQI 314
L RDIIG+A+TGSGKT AF++P++ I P++++ ++GP +I APTRELA QI
Sbjct: 428 GLQNRDIIGVAETGSGKTLAFLIPLLSWIQSLPKIERLEDVDQGPYAIIMAPTRELAQQI 487
Query: 315 YLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVT 374
ET KF + GIR V GG+S+ +Q L+ GCEIVIATPGRLID+L+ + L +++ T
Sbjct: 488 EEETTKFGQPLGIRTVVVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCT 547
Query: 375 YLVLDEADRMFDLGFEPQIRSI-----VGQIRPDRQ 405
Y+VLDEADRM D+GFEP ++ I V ++PD +
Sbjct: 548 YIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTE 583
Score = 343 (125.8 bits), Expect = 4.5e-78, Sum P(3) = 4.5e-78
Identities = 76/190 (40%), Positives = 114/190 (60%)
Query: 404 RQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEK 463
RQT++F+ATMP VE+LAR L P V +G VG E Q+V+++ + +K L+E
Sbjct: 602 RQTVMFTATMPPAVERLARTYLRRPATVYIGSVGKPTERTEQIVYMM-GENDKRKKLMEI 660
Query: 464 LPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHV 523
L ID V++F ++K D + L + G+ + LHG K Q R L KSG +
Sbjct: 661 LSRKIDP-PVIIFVNQKKGADVLAKGLEKLGYNSCTLHGGKGQEQREYALAALKSGAKDI 719
Query: 524 LIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFA 583
L+ATDVA RG+DIK + V+N+D+A+ ++ + HRIGRTGRAG K G A + VT+ ++
Sbjct: 720 LVATDVAGRGIDIKDVSLVINYDMAKTIEDYTHRIGRTGRAG-KTGCAISFVTKDDSALF 778
Query: 584 GELVNSLIAA 593
+L + A+
Sbjct: 779 YDLKQCVSAS 788
Score = 37 (18.1 bits), Expect = 4.5e-78, Sum P(3) = 4.5e-78
Identities = 9/21 (42%), Positives = 11/21 (52%)
Query: 132 RAGYDSDEEVYAAAKAVDAGM 152
RA +D+ E AAA V M
Sbjct: 172 RAAHDAAREQMAAASKVSISM 192
>MGI|MGI:91842 [details] [associations]
symbol:D1Pas1 "DNA segment, Chr 1, Pasteur Institute 1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0007275 "multicellular
organismal development" evidence=IEA] [GO:0007283 "spermatogenesis"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0030154 "cell differentiation" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 MGI:MGI:91842
GO:GO:0007275 GO:GO:0005524 GO:GO:0030154 GO:GO:0003677
GO:GO:0007283 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00620000087942 HOGENOM:HOG000268804
KO:K11594 HOVERGEN:HBG015893 EMBL:J04847 EMBL:AK029542
IPI:IPI00133708 PIR:A32378 RefSeq:NP_149068.1 UniGene:Mm.108054
ProteinModelPortal:P16381 SMR:P16381 IntAct:P16381 STRING:P16381
PhosphoSite:P16381 PaxDb:P16381 PRIDE:P16381
Ensembl:ENSMUST00000045108 GeneID:110957 KEGG:mmu:110957 CTD:110957
InParanoid:P16381 OMA:HIVQECD OrthoDB:EOG4S7JPR NextBio:365019
Bgee:P16381 CleanEx:MM_D1PAS1 Genevestigator:P16381
GermOnline:ENSMUSG00000039224 Uniprot:P16381
Length = 660
Score = 760 (272.6 bits), Expect = 5.9e-78, Sum P(2) = 5.9e-78
Identities = 169/414 (40%), Positives = 249/414 (60%)
Query: 211 LAIRVSGFDVPRPVKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAK 270
+ + +G + P +++F D +M I Y +PT +Q A+PII RD++ A+
Sbjct: 165 IPVEATGNNCPPHIESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQ 224
Query: 271 TGSGKTAAFVLPMIVHIM-DQP----ELQKEEG--------PIGVICAPTRELAHQIYLE 317
TGSGKTAAF+LP++ I D P KE G PI ++ APTRELA QIY E
Sbjct: 225 TGSGKTAAFLLPILSQIYTDGPGEALRAMKENGKYGRRKQYPISLVLAPTRELAVQIYEE 284
Query: 318 TKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLV 377
+KF+ +R VYGG Q ++L+ GC +++ATPGRL+DM++ + + YLV
Sbjct: 285 ARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLV 344
Query: 378 LDEADRMFDLGFEPQIRSIVGQ--IRPD--RQTLLFSATMPRKVEKLAREILSDPVRVTV 433
LDEADRM D+GFEPQIR IV Q + P R T++FSAT P++++ LAR+ L + + + V
Sbjct: 345 LDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAV 404
Query: 434 GEVGMANEDITQVVHVIPSDAEKLPWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQK 493
G VG +E+ITQ V V +A+K +LL+ L D +LVF K D +E L +
Sbjct: 405 GRVGSTSENITQKV-VWVEEADKRSFLLDLLNATGKDSLILVFVETKKGADSLEDFLYHE 463
Query: 494 GFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVNFDIARDMDM 553
G+ ++HGD+ Q R E L +F+SG +L+AT VAARGLDI ++K V+NFD+ D++
Sbjct: 464 GYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEE 523
Query: 554 HVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELVNSLIAAGQNVSMELMDLAMK 607
+VHRIGRTGR G+ G A + ++ +L++ L+ A Q V L ++A +
Sbjct: 524 YVHRIGRTGRVGNL-GLATSFFNERNINITKDLLDLLVEAKQEVPSWLENMAFE 576
Score = 43 (20.2 bits), Expect = 5.9e-78, Sum P(2) = 5.9e-78
Identities = 22/92 (23%), Positives = 35/92 (38%)
Query: 654 SSQSVPS---RSAAVNSLKTGMMTQFRSNFVAA-SSNTPSEGFNNSASAYANKRPALRGF 709
+ Q VPS A + K G + +S F + + S+S++++ R +
Sbjct: 562 AKQEVPSWLENMAFEHHYKGGSRGRSKSRFSGGFGARDYRQSSGASSSSFSSGRAS--NS 619
Query: 710 VSGGSIGGDVNGTQTTGLTGFVSGGSIGGEMS 741
SGG G G GF + GG S
Sbjct: 620 RSGGGSHGSSRGFGGGSYGGFYNSDGYGGNYS 651
>RGD|1309586 [details] [associations]
symbol:RGD1309586 "similar to probable ATP-dependent RNA
helicase - mouse" species:10116 "Rattus norvegicus" [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 RGD:1309586 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 KO:K11594 OMA:HIVQECD
OrthoDB:EOG4S7JPR EMBL:CH473985 IPI:IPI00954695
RefSeq:NP_001102328.1 UniGene:Rn.218622 Ensembl:ENSRNOT00000003378
GeneID:364073 KEGG:rno:364073 UCSC:RGD:1309586 CTD:364073
NextBio:684798 Uniprot:D3ZN21
Length = 659
Score = 760 (272.6 bits), Expect = 5.9e-78, Sum P(2) = 5.9e-78
Identities = 169/414 (40%), Positives = 249/414 (60%)
Query: 211 LAIRVSGFDVPRPVKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAK 270
+ + +G + P +++F D +M I Y +PT +Q A+PII RD++ A+
Sbjct: 164 IPVEATGNNCPPHIESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQ 223
Query: 271 TGSGKTAAFVLPMIVHIM-DQP----ELQKEEG--------PIGVICAPTRELAHQIYLE 317
TGSGKTAAF+LP++ I D P KE G PI ++ APTRELA QIY E
Sbjct: 224 TGSGKTAAFLLPILSQIYTDGPGEALRAMKENGKYGRRKQYPISLVLAPTRELAVQIYEE 283
Query: 318 TKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLV 377
+KF+ +R VYGG Q ++L+ GC +++ATPGRL+DM++ + + YLV
Sbjct: 284 ARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLV 343
Query: 378 LDEADRMFDLGFEPQIRSIVGQ--IRPD--RQTLLFSATMPRKVEKLAREILSDPVRVTV 433
LDEADRM D+GFEPQIR IV Q + P R T++FSAT P++++ LAR+ L + + + V
Sbjct: 344 LDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAV 403
Query: 434 GEVGMANEDITQVVHVIPSDAEKLPWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQK 493
G VG +E+ITQ V V +A+K +LL+ L D +LVF K D +E L +
Sbjct: 404 GRVGSTSENITQKV-VWVEEADKRSFLLDLLNATGKDSLILVFVETKKGADSLEDFLYHE 462
Query: 494 GFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVNFDIARDMDM 553
G+ ++HGD+ Q R E L +F+SG +L+AT VAARGLDI ++K V+NFD+ D++
Sbjct: 463 GYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEE 522
Query: 554 HVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELVNSLIAAGQNVSMELMDLAMK 607
+VHRIGRTGR G+ G A + ++ +L++ L+ A Q V L ++A +
Sbjct: 523 YVHRIGRTGRVGNL-GLATSFFNERNINITKDLLDLLVEAKQEVPSWLENMAFE 575
Score = 43 (20.2 bits), Expect = 5.9e-78, Sum P(2) = 5.9e-78
Identities = 22/92 (23%), Positives = 35/92 (38%)
Query: 654 SSQSVPS---RSAAVNSLKTGMMTQFRSNFVAA-SSNTPSEGFNNSASAYANKRPALRGF 709
+ Q VPS A + K G + +S F + + S+S++++ R +
Sbjct: 561 AKQEVPSWLENMAFEHHYKGGSRGRSKSRFSGGFGARDYRQSSGASSSSFSSGRAS--NS 618
Query: 710 VSGGSIGGDVNGTQTTGLTGFVSGGSIGGEMS 741
SGG G G GF + GG S
Sbjct: 619 RSGGGSHGSSRGFGGGSYGGFYNSDGYGGNYS 650
>UNIPROTKB|F1S0I6 [details] [associations]
symbol:DDX43 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005622 "intracellular" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR011545 Pfam:PF00013 Pfam:PF00270
Pfam:PF00271 PROSITE:PS00039 PROSITE:PS50084 PROSITE:PS51194
SMART:SM00322 SMART:SM00490 GO:GO:0005524 GO:GO:0003723
GO:GO:0005622 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00660000095174 OMA:VLDITHV EMBL:CU468562
EMBL:AEMK01095428 EMBL:AEMK01188208 EMBL:FP312832
Ensembl:ENSSSCT00000004740 Uniprot:F1S0I6
Length = 650
Score = 784 (281.0 bits), Expect = 6.2e-78, P = 6.2e-78
Identities = 170/433 (39%), Positives = 264/433 (60%)
Query: 187 KDFYQDSASISGMSEQDVMEYKK-SLAIRVSGFD------VPRPVKTFEDCGFST--QLM 237
K+FY +S S MS++ V ++K + I +P P FED F ++M
Sbjct: 195 KNFYMESEITSSMSQEQVQNWRKENYNIMCDDLKDGEKRPIPNPACKFEDA-FQCYPEVM 253
Query: 238 HAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQP---ELQ 294
I K G++KPT IQ QA PIIL G D+IG+A+TG+GKT ++++P +H+ QP LQ
Sbjct: 254 INIKKAGFQKPTPIQSQAWPIILQGIDLIGVAQTGTGKTLSYLMPGFIHVDSQPVVFSLQ 313
Query: 295 K-EEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVI 353
+ GP ++ PTRELA Q+ E K++ G++ VYGG + Q K+L G +I+I
Sbjct: 314 RARNGPGMLVLTPTRELALQVEAECSKYSYK-GLKSVCVYGGGDRDGQIKDLLKGVDIII 372
Query: 354 ATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATM 413
ATPGRL D+ + + ++YLVLDEAD+M D+GFEPQI I+ IRPDRQT++ SAT
Sbjct: 373 ATPGRLNDLQMNNFVYLKSISYLVLDEADKMLDMGFEPQIMKILLDIRPDRQTVMTSATW 432
Query: 414 PRKVEKLAREILSDPVRVTVGEVGM-ANEDITQVVHVIPSDAEKLPWLLEKLPGMIDDGD 472
P V +LA+ L +P+ V VG + + A + Q + ++ ++ EK + + M
Sbjct: 433 PYAVRRLAQSYLKEPMIVYVGTLDLVAVSTVKQNI-IVTTEDEKRSHIQTFIESMSPKDK 491
Query: 473 VLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAAR 532
V++F S+K D + S L + +LHG+++Q R L+ FK+G +LIATD+A+R
Sbjct: 492 VIIFVSRKAVADHLSSDLGIRHISVESLHGNREQGDRERALKNFKTGKVRILIATDLASR 551
Query: 533 GLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELVNSLIA 592
GLD+ + V N+D R+++ +VHR+GRTGRAG + G + TL+T+ + + AGEL++ L
Sbjct: 552 GLDVHDVTHVYNYDFPRNIEEYVHRVGRTGRAG-RTGVSITLITRSDWKIAGELIHILER 610
Query: 593 AGQNVSMELMDLA 605
A Q++ +L+++A
Sbjct: 611 ANQSIPEDLVEMA 623
>ZFIN|ZDB-GENE-980526-150 [details] [associations]
symbol:pl10 "pl10" species:7955 "Danio rerio"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
ZFIN:ZDB-GENE-980526-150 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 KO:K11594 HOVERGEN:HBG015893
EMBL:BC059794 IPI:IPI00483337 RefSeq:NP_571016.2 UniGene:Dr.75779
ProteinModelPortal:Q6PBB2 SMR:Q6PBB2 GeneID:30116 KEGG:dre:30116
CTD:30116 InParanoid:Q6PBB2 NextBio:20806595 ArrayExpress:Q6PBB2
Uniprot:Q6PBB2
Length = 688
Score = 642 (231.1 bits), Expect = 7.5e-78, Sum P(2) = 7.5e-78
Identities = 140/317 (44%), Positives = 202/317 (63%)
Query: 294 QKEEGPIGVICAPTRELAHQIYLETKKFA-KSHGIRVSAVYGGMSKLDQFKELKAGCEIV 352
++++ PI ++ APTRELA QIY E +KF+ +SH +R VYGG Q ++L+ GC ++
Sbjct: 294 RRKQYPISLVLAPTRELALQIYDEARKFSYRSH-VRPCVVYGGADIGQQIRDLERGCHLL 352
Query: 353 IATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQ--IRPD--RQTLL 408
+ATPGRL+DM++ + + YLVLDEADRM D+GFEPQIR IV Q + P RQT++
Sbjct: 353 VATPGRLLDMMERGKIGLDYCNYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGLRQTMM 412
Query: 409 FSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEKLPGMI 468
FSAT P++++ LAR+ L D + + VG VG +E+ITQ V V + +K +LL+ L
Sbjct: 413 FSATFPKEIQILARDFLEDYIFLAVGRVGSTSENITQKV-VWVEENDKRSFLLDLLNATG 471
Query: 469 DDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATD 528
D LVF K D +E L ++G+ ++HGD+ Q R E L +F+SG +L+AT
Sbjct: 472 KDSLTLVFVETKKGADALEDFLYREGYACTSIHGDRSQRDREEALHQFRSGRCPILVATA 531
Query: 529 VAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELVN 588
VAARGLDI ++K V+NFD+ D++ +VHRIGRTGR G+ G A + K +L++
Sbjct: 532 VAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNL-GLATSFFNDKNGNITKDLLD 590
Query: 589 SLIAAGQNVSMELMDLA 605
L+ A Q V L LA
Sbjct: 591 ILVEAKQEVPSWLESLA 607
Score = 160 (61.4 bits), Expect = 7.5e-78, Sum P(2) = 7.5e-78
Identities = 36/96 (37%), Positives = 54/96 (56%)
Query: 197 SGMSEQDVMEYKKSLAIRVSGFDVPRPVKTFEDCGFSTQLMHAISKQGYEKPTSIQCQAL 256
SG + E + + +G + P+P+ F D +M I+ Y +PT +Q A+
Sbjct: 180 SGSNTGINFEKYDDIPVEATGHNGPQPIDRFHDLEMGEIIMGNINLSRYTRPTPVQKHAI 239
Query: 257 PIILSGRDIIGIAKTGSGKTAAFVLPMIVHIM-DQP 291
PII S RD++ A+TGSGKTAAF+LP++ I D P
Sbjct: 240 PIIKSKRDLMACAQTGSGKTAAFLLPVLSQIYTDGP 275
>UNIPROTKB|G3MYF0 [details] [associations]
symbol:LOC100300937 "Uncharacterized protein" species:9913
"Bos taurus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR011545
Pfam:PF00013 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS50084 PROSITE:PS51194 SMART:SM00322 SMART:SM00490
GO:GO:0005524 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00660000095174 OMA:GLKSICI EMBL:DAAA02074437
Ensembl:ENSBTAT00000065115 Uniprot:G3MYF0
Length = 608
Score = 783 (280.7 bits), Expect = 7.9e-78, P = 7.9e-78
Identities = 169/435 (38%), Positives = 263/435 (60%)
Query: 181 DYEPFNKDFYQDSASISGMSEQDVMEYKK-SLAIRVSGFD------VPRPVKTFEDCGFS 233
D P K+ Y +S + +SE V ++K + IR +P+P TFED F
Sbjct: 149 DLPPIKKNLYIESKATHSLSEAQVEIWRKENFNIRCDDLTEGEKRPIPKPTCTFEDA-FQ 207
Query: 234 T--QLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQP 291
++M +I + G++KPT IQ Q+ PIIL G D+IGIA+TG+GKT ++++P +HI QP
Sbjct: 208 QYPEIMQSIRRAGFQKPTPIQSQSWPIILQGIDLIGIAQTGTGKTLSYLMPGFIHIHSQP 267
Query: 292 ELQKEE-GPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCE 350
+K+ GP ++ PTRELA Q+ E K+ G++ +YGG ++ Q +++ G +
Sbjct: 268 VSRKQRNGPGMLVLTPTRELALQVEAECSKYLYK-GLKSVCIYGGGNRKGQIQDVTKGVD 326
Query: 351 IVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFS 410
I+IATPGRL D+ + + +TYLVLDEAD+M DLGFE QI I+ +RPDRQT++ +
Sbjct: 327 IIIATPGRLNDLQMNNFVNLRSITYLVLDEADKMLDLGFEHQIMKILLDVRPDRQTVMTT 386
Query: 411 ATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEKLPGMIDD 470
A+ P +LA+ L P+ V VG + + + + ++ ++ EK + E L +
Sbjct: 387 ASWPDSTRRLAQSYLKQPMIVYVGTLDLVTVNTVKQNIIVTTEEEKRSLVKEFLQSLSPK 446
Query: 471 GDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVA 530
V+VF S+K D++ S L+ +G +LHGD++Q+ R + L+ F++G +LIATD+A
Sbjct: 447 DKVIVFVSRKLVADDLSSDLSIQGIPVQSLHGDREQSDRDQALEDFRTGRVKILIATDLA 506
Query: 531 ARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELVNSL 590
ARGLD+ + V N++ R+++ +VHR+GRTGRAG K G + TLVTQ + + A EL+ L
Sbjct: 507 ARGLDVSDVTHVYNYNFPRNIEEYVHRVGRTGRAG-KIGESITLVTQDDWKIADELIKIL 565
Query: 591 IAAGQNVSMELMDLA 605
A Q V L +A
Sbjct: 566 QRANQIVPPSLRSMA 580
>UNIPROTKB|B4DXX7 [details] [associations]
symbol:DDX3Y "Uncharacterized protein" species:9606 "Homo
sapiens" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 HOVERGEN:HBG015893
UniGene:Hs.99120 HGNC:HGNC:2699 EMBL:AC004474 EMBL:AK302172
IPI:IPI00646152 SMR:B4DXX7 STRING:B4DXX7 Ensembl:ENST00000537441
UCSC:uc011nar.1 Uniprot:B4DXX7
Length = 657
Score = 755 (270.8 bits), Expect = 1.2e-77, Sum P(2) = 1.2e-77
Identities = 169/412 (41%), Positives = 246/412 (59%)
Query: 211 LAIRVSGFDVPRPVKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAK 270
+ + +G + P ++ F D +M I Y +PT +Q A+PII RD++ A+
Sbjct: 161 IPVEATGSNCPPHIENFSDIDMGEIIMGNIELTRYTRPTPVQKHAIPIIKGKRDLMACAQ 220
Query: 271 TGSGKTAAFVLPMIVHIM-DQP----ELQKEEG--------PIGVICAPTRELAHQIYLE 317
TGSGKTAAF+LP++ I D P + KE G PI ++ APTRELA QIY E
Sbjct: 221 TGSGKTAAFLLPILSQIYTDGPGEALKAVKENGRYGRRKQYPISLVLAPTRELAVQIYEE 280
Query: 318 TKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLV 377
+KF+ +R VYGG Q ++L+ GC +++ATPGRL+DM++ + + YLV
Sbjct: 281 ARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLV 340
Query: 378 LDEADRMFDLGFEPQIRSIVGQ--IRPD--RQTLLFSATMPRKVEKLAREILSDPVRVTV 433
LDEADRM D+GFEPQIR IV Q + P R T++FSAT P++++ LAR+ L + + + V
Sbjct: 341 LDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAV 400
Query: 434 GEVGMANEDITQVVHVIPSDAEKLPWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQK 493
G VG +E+ITQ V V D +K +LL+ L D LVF K D +E L +
Sbjct: 401 GRVGSTSENITQKV-VWVEDLDKRSFLLDILGATGSDSLTLVFVETKKGADSLEDFLYHE 459
Query: 494 GFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVNFDIARDMDM 553
G+ ++HGD+ Q R E L +F+SG +L+AT VAARGLDI +++ V+NFD+ D++
Sbjct: 460 GYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVRHVINFDLPSDIEE 519
Query: 554 HVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELVNSLIAAGQNVSMELMDLA 605
+VHRIGRTGR G+ G A + +K +L++ L+ A Q V L ++A
Sbjct: 520 YVHRIGRTGRVGNL-GLATSFFNEKNMNITKDLLDLLVEAKQEVPSWLENMA 570
Score = 153 (58.9 bits), Expect = 5.6e-07, Sum P(2) = 5.6e-07
Identities = 52/180 (28%), Positives = 79/180 (43%)
Query: 132 RAGYDSDEEVYAAAKAVDAGMLDYDSDDN---PVVVEKKKIEPIPALDHSLID--YEPFN 186
+ GY S+ + + D G DYD N P ++ D S+ D +P
Sbjct: 77 KPGYFSERGSGSRGRFDDRGRSDYDGIGNRERPGFGRFERSGHSRWCDKSVEDDWSKPLP 136
Query: 187 KDFYQDSASISGMSEQDVMEYKKSLAIRVSGFDVPRPVKTFEDCGFSTQLMHAISKQGYE 246
+ SG + E + + +G + P ++ F D +M I Y
Sbjct: 137 PSERLEQELFSGGNTGINFEKYDDIPVEATGSNCPPHIENFSDIDMGEIIMGNIELTRYT 196
Query: 247 KPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIM-DQP----ELQKEEGPIG 301
+PT +Q A+PII RD++ A+TGSGKTAAF+LP++ I D P + KE G G
Sbjct: 197 RPTPVQKHAIPIIKGKRDLMACAQTGSGKTAAFLLPILSQIYTDGPGEALKAVKENGRYG 256
Score = 45 (20.9 bits), Expect = 1.2e-77, Sum P(2) = 1.2e-77
Identities = 24/90 (26%), Positives = 36/90 (40%)
Query: 654 SSQSVPS---RSAAVNSLKTGMMTQFRSNFVAASSNTPSEGFNNSASAYANKRPALRGFV 710
+ Q VPS A + K G + +SN S + + S+ + ++ A RG
Sbjct: 558 AKQEVPSWLENMAYEHHYKGGSRGRSKSN--RFSGGFGARDYRQSSGSSSSGFGASRGSS 615
Query: 711 S--GGSIGGDVNGTQTTGLTGFVSGGSIGG 738
S GG G+ G G GF + GG
Sbjct: 616 SRSGGGGYGNSRGFGGGGYGGFYNSDGYGG 645
>UNIPROTKB|O15523 [details] [associations]
symbol:DDX3Y "ATP-dependent RNA helicase DDX3Y"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0003677 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 Orphanet:1646
HOGENOM:HOG000268804 KO:K11594 HOVERGEN:HBG015893 HPA:HPA001648
HPA:HPA005631 OrthoDB:EOG47D9FV EMBL:AF000985 EMBL:AF000984
EMBL:BC034942 IPI:IPI00293616 RefSeq:NP_001116137.1
RefSeq:NP_004651.2 UniGene:Hs.99120 ProteinModelPortal:O15523
SMR:O15523 IntAct:O15523 MINT:MINT-2999090 STRING:O15523
PhosphoSite:O15523 PaxDb:O15523 PRIDE:O15523
Ensembl:ENST00000336079 Ensembl:ENST00000360160 GeneID:8653
KEGG:hsa:8653 UCSC:uc004fsu.1 CTD:8653 GeneCards:GC0YP015016
HGNC:HGNC:2699 MIM:400010 neXtProt:NX_O15523 PharmGKB:PA27168
InParanoid:O15523 OMA:GNWANAN PhylomeDB:O15523 GenomeRNAi:8653
NextBio:32449 ArrayExpress:O15523 Bgee:O15523 CleanEx:HS_DDX3Y
Genevestigator:O15523 GermOnline:ENSG00000067048 Uniprot:O15523
Length = 660
Score = 755 (270.8 bits), Expect = 1.2e-77, Sum P(2) = 1.2e-77
Identities = 169/412 (41%), Positives = 246/412 (59%)
Query: 211 LAIRVSGFDVPRPVKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAK 270
+ + +G + P ++ F D +M I Y +PT +Q A+PII RD++ A+
Sbjct: 164 IPVEATGSNCPPHIENFSDIDMGEIIMGNIELTRYTRPTPVQKHAIPIIKGKRDLMACAQ 223
Query: 271 TGSGKTAAFVLPMIVHIM-DQP----ELQKEEG--------PIGVICAPTRELAHQIYLE 317
TGSGKTAAF+LP++ I D P + KE G PI ++ APTRELA QIY E
Sbjct: 224 TGSGKTAAFLLPILSQIYTDGPGEALKAVKENGRYGRRKQYPISLVLAPTRELAVQIYEE 283
Query: 318 TKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLV 377
+KF+ +R VYGG Q ++L+ GC +++ATPGRL+DM++ + + YLV
Sbjct: 284 ARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLV 343
Query: 378 LDEADRMFDLGFEPQIRSIVGQ--IRPD--RQTLLFSATMPRKVEKLAREILSDPVRVTV 433
LDEADRM D+GFEPQIR IV Q + P R T++FSAT P++++ LAR+ L + + + V
Sbjct: 344 LDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAV 403
Query: 434 GEVGMANEDITQVVHVIPSDAEKLPWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQK 493
G VG +E+ITQ V V D +K +LL+ L D LVF K D +E L +
Sbjct: 404 GRVGSTSENITQKV-VWVEDLDKRSFLLDILGATGSDSLTLVFVETKKGADSLEDFLYHE 462
Query: 494 GFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVNFDIARDMDM 553
G+ ++HGD+ Q R E L +F+SG +L+AT VAARGLDI +++ V+NFD+ D++
Sbjct: 463 GYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVRHVINFDLPSDIEE 522
Query: 554 HVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELVNSLIAAGQNVSMELMDLA 605
+VHRIGRTGR G+ G A + +K +L++ L+ A Q V L ++A
Sbjct: 523 YVHRIGRTGRVGNL-GLATSFFNEKNMNITKDLLDLLVEAKQEVPSWLENMA 573
Score = 153 (58.9 bits), Expect = 5.7e-07, Sum P(2) = 5.7e-07
Identities = 52/180 (28%), Positives = 79/180 (43%)
Query: 132 RAGYDSDEEVYAAAKAVDAGMLDYDSDDN---PVVVEKKKIEPIPALDHSLID--YEPFN 186
+ GY S+ + + D G DYD N P ++ D S+ D +P
Sbjct: 80 KPGYFSERGSGSRGRFDDRGRSDYDGIGNRERPGFGRFERSGHSRWCDKSVEDDWSKPLP 139
Query: 187 KDFYQDSASISGMSEQDVMEYKKSLAIRVSGFDVPRPVKTFEDCGFSTQLMHAISKQGYE 246
+ SG + E + + +G + P ++ F D +M I Y
Sbjct: 140 PSERLEQELFSGGNTGINFEKYDDIPVEATGSNCPPHIENFSDIDMGEIIMGNIELTRYT 199
Query: 247 KPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIM-DQP----ELQKEEGPIG 301
+PT +Q A+PII RD++ A+TGSGKTAAF+LP++ I D P + KE G G
Sbjct: 200 RPTPVQKHAIPIIKGKRDLMACAQTGSGKTAAFLLPILSQIYTDGPGEALKAVKENGRYG 259
Score = 45 (20.9 bits), Expect = 1.2e-77, Sum P(2) = 1.2e-77
Identities = 24/90 (26%), Positives = 36/90 (40%)
Query: 654 SSQSVPS---RSAAVNSLKTGMMTQFRSNFVAASSNTPSEGFNNSASAYANKRPALRGFV 710
+ Q VPS A + K G + +SN S + + S+ + ++ A RG
Sbjct: 561 AKQEVPSWLENMAYEHHYKGGSRGRSKSN--RFSGGFGARDYRQSSGSSSSGFGASRGSS 618
Query: 711 S--GGSIGGDVNGTQTTGLTGFVSGGSIGG 738
S GG G+ G G GF + GG
Sbjct: 619 SRSGGGGYGNSRGFGGGGYGGFYNSDGYGG 648
>UNIPROTKB|F1NQ09 [details] [associations]
symbol:DDX43 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00660000095174 EMBL:AADN02002507 EMBL:AADN02002508
IPI:IPI00819782 ProteinModelPortal:F1NQ09
Ensembl:ENSGALT00000037063 Uniprot:F1NQ09
Length = 451
Score = 781 (280.0 bits), Expect = 1.3e-77, P = 1.3e-77
Identities = 178/436 (40%), Positives = 258/436 (59%)
Query: 181 DYEPFNKDFYQDSASISGMSEQDVMEYKKS----LAIRVSGFD---VPRPVKTFEDCGFS 233
D P K+FY++S+ + MS ++V ++K + + + +P PV FED F
Sbjct: 1 DLPPIEKNFYKESSRTACMSPEEVELWRKENNNIICDDLKEGEKRCIPNPVCKFEDV-FE 59
Query: 234 T--QLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQP 291
+M I K G++KPT IQ QA PIIL G D+IGIA+TG+GKT A+++P +H+ QP
Sbjct: 60 QYPDIMANIRKTGFQKPTPIQSQAWPIILQGIDLIGIAQTGTGKTLAYLMPGFIHLASQP 119
Query: 292 -ELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCE 350
K GP ++ APTRELA Q+ E K+ G + +YGG + Q + G +
Sbjct: 120 IPKDKRGGPGMLVLAPTRELALQVEAECLKYTYK-GFKSICIYGGGDRKAQINVVTKGVD 178
Query: 351 IVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFS 410
IVIATPGRL D+ + + +TYLVLDEADRM D+GFEPQI I+ +RPDRQT++ S
Sbjct: 179 IVIATPGRLNDLQMNNFINLKSITYLVLDEADRMLDMGFEPQIMKILIDVRPDRQTVMMS 238
Query: 411 ATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEKLPGMIDD 470
AT P V +LA+ L +P+ V VG + +A + V+ + D + W ++
Sbjct: 239 ATWPDGVRRLAKSYLRNPMIVYVGTLDLAVSGV--VLKYLQFDKDIFTWKYMQVNAQSFC 296
Query: 471 GDVLV-FASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDV 529
DV+V F D+I S L +G +LHGD++Q R + L FK G +L+ATD+
Sbjct: 297 TDVVVVFVQLHVVADDIASDLGVQGVPVQSLHGDREQCDREQALDDFKKGKVRILVATDL 356
Query: 530 AARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELVNS 589
A+RGLD+ I V NFD R+++ +VHR+GRTGRAG + G A TL+T+K+ + A EL++
Sbjct: 357 ASRGLDVHDITHVFNFDFPRNIEEYVHRVGRTGRAG-RTGKAVTLITKKDWKAASELIDI 415
Query: 590 LIAAGQNVSMELMDLA 605
L A Q V EL+ +A
Sbjct: 416 LQRAKQVVPDELISMA 431
>UNIPROTKB|F1NAH6 [details] [associations]
symbol:LOC100859810 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005783 "endoplasmic reticulum" evidence=IEA]
[GO:0035458 "cellular response to interferon-beta" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0051607 "defense response
to virus" evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] InterPro:IPR001650 InterPro:IPR001878
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00343 SMART:SM00490 GO:GO:0005783 GO:GO:0005524
GO:GO:0003677 GO:GO:0008270 GO:GO:0045944 GO:GO:0035458
GO:GO:0071013 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 OMA:KDQEERS EMBL:AADN02028748
EMBL:AADN02028749 EMBL:AADN02068652 IPI:IPI00576331
Ensembl:ENSGALT00000004794 Uniprot:F1NAH6
Length = 607
Score = 780 (279.6 bits), Expect = 1.6e-77, P = 1.6e-77
Identities = 176/439 (40%), Positives = 256/439 (58%)
Query: 180 IDYEPFNKDFYQDSASISGMSEQDVMEYKKSLAIRVSGFDVPRPVKTFEDCGFSTQLMHA 239
I Y+ K ++ I MSE +K I V G +P P+K+F++ F ++
Sbjct: 132 ITYDDPIKTSWRAPRYILAMSEARHNRVRKKYHILVEGEGIPPPIKSFKEMKFPAAILRG 191
Query: 240 ISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPE---LQKE 296
+ K+G ++PT IQ Q +P ILSGRD+IGIA TGSGKT F LP+I+ ++Q + K
Sbjct: 192 LKKKGIQQPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVIMFCLEQEKRLPFSKR 251
Query: 297 EGPIGVICAPTRELAHQI------YLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCE 350
EGP G+I P+RELA Q Y + +R + GGMS +Q + +K G
Sbjct: 252 EGPYGLIICPSRELARQTHGIIEYYCRLLQEDSLPPLRCALCIGGMSVKEQMETIKHGVH 311
Query: 351 IVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFS 410
+++ATPGRL+D+L+ K +++ YL LDEADRM D+GFE IR+I + RQTLLFS
Sbjct: 312 MMVATPGRLMDLLQKKMVSLDICRYLALDEADRMIDMGFEGDIRTIFSYFKGQRQTLLFS 371
Query: 411 ATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEKLPGMIDD 470
ATMP+K++ A+ L P+ + VG G A+ D+ Q V + +A K+ +LLE L
Sbjct: 372 ATMPKKIQNFAKSALVKPITINVGRAGAASLDVVQEVEYVKEEA-KMVYLLECLQKT--P 428
Query: 471 GDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVA 530
VL+FA KK VD I L KG +A A+HG KDQ R + ++ F+ G VL+ATDVA
Sbjct: 429 PPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFRDGKKDVLVATDVA 488
Query: 531 ARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQK-EARFAGELVNS 589
++GLD +I+ V+N+D+ +++ +VHRIGRTGR+G+ G A T + + + +L
Sbjct: 489 SKGLDFPAIQHVINYDMPEEIENYVHRIGRTGRSGNT-GIATTFINKACDESVLMDLKAL 547
Query: 590 LIAAGQNVSMELMDLAMKD 608
L+ A Q V L L D
Sbjct: 548 LLEAKQKVPPVLQVLHCGD 566
>UNIPROTKB|A3KN07 [details] [associations]
symbol:DDX41 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0051607 "defense response to virus" evidence=IEA] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0035458 "cellular response to
interferon-beta" evidence=IEA] [GO:0005783 "endoplasmic reticulum"
evidence=IEA] InterPro:IPR001650 InterPro:IPR001878
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00343 SMART:SM00490 GO:GO:0005783 GO:GO:0005524
GO:GO:0003677 GO:GO:0008270 GO:GO:0045944 GO:GO:0051607
GO:GO:0035458 GO:GO:0071013 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00620000087942 HOVERGEN:HBG015893
KO:K13116 OMA:KDQEERS CTD:51428 HOGENOM:HOG000268792
OrthoDB:EOG4CVG6K EMBL:DAAA02020056 EMBL:BC133465 IPI:IPI00840518
RefSeq:NP_001076071.1 UniGene:Bt.5258 SMR:A3KN07
Ensembl:ENSBTAT00000043510 GeneID:505276 KEGG:bta:505276
InParanoid:A3KN07 NextBio:20867058 Uniprot:A3KN07
Length = 622
Score = 778 (278.9 bits), Expect = 2.7e-77, P = 2.7e-77
Identities = 176/439 (40%), Positives = 255/439 (58%)
Query: 180 IDYEPFNKDFYQDSASISGMSEQDVMEYKKSLAIRVSGFDVPRPVKTFEDCGFSTQLMHA 239
I Y+ K + + MSE+ +K I V G +P P+K+F++ F ++
Sbjct: 136 ITYDDPIKTSWTPPRYVLSMSEERHERVRKKYHILVEGDGIPPPIKSFKEMKFPAAILRG 195
Query: 240 ISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPE---LQKE 296
+ K+G PT IQ Q +P ILSGRD+IGIA TGSGKT F LP+I+ ++Q + K
Sbjct: 196 LKKKGIHHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVIMFCLEQEKRLPFSKR 255
Query: 297 EGPIGVICAPTRELAHQI------YLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCE 350
EGP G+I P+RELA Q Y + S +R + GGMS +Q + ++ G
Sbjct: 256 EGPYGLIICPSRELARQTHGILEYYCRLLQEDSSPLLRCALCIGGMSVKEQMETIRHGVH 315
Query: 351 IVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFS 410
+++ATPGRL+D+L+ K +++ YL LDEADRM D+GFE IR+I + RQTLLFS
Sbjct: 316 MMVATPGRLMDLLQKKMVSLDICRYLALDEADRMIDMGFEGDIRTIFSYFKGQRQTLLFS 375
Query: 411 ATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEKLPGMIDD 470
ATMP+K++ A+ L PV + VG G A+ D+ Q V + +A K+ +LLE L
Sbjct: 376 ATMPKKIQNFAKSALVKPVTINVGRAGAASLDVIQEVEYVKEEA-KMVYLLECLQKT--P 432
Query: 471 GDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVA 530
VL+FA KK VD I L KG +A A+HG KDQ R + ++ F+ G VL+ATDVA
Sbjct: 433 PPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFREGKKDVLVATDVA 492
Query: 531 ARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQK-EARFAGELVNS 589
++GLD +I+ V+N+D+ +++ +VHRIGRTGR+G+ G A T + + + +L
Sbjct: 493 SKGLDFPAIQHVINYDMPEEIENYVHRIGRTGRSGNT-GIATTFINKACDESVLMDLKAL 551
Query: 590 LIAAGQNVSMELMDLAMKD 608
L+ A Q V L L D
Sbjct: 552 LLEAKQKVPPVLQVLHCGD 570
>UNIPROTKB|E2R052 [details] [associations]
symbol:DDX41 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0051607 "defense response to virus" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0035458 "cellular
response to interferon-beta" evidence=IEA] [GO:0005783 "endoplasmic
reticulum" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] InterPro:IPR001650 InterPro:IPR001878
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00343 SMART:SM00490 GO:GO:0005783 GO:GO:0005524
GO:GO:0003677 GO:GO:0008270 GO:GO:0045944 GO:GO:0051607
GO:GO:0035458 GO:GO:0071013 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 KO:K13116 CTD:51428 EMBL:AAEX03002959
RefSeq:XP_536417.2 ProteinModelPortal:E2R052
Ensembl:ENSCAFT00000025858 GeneID:479274 KEGG:cfa:479274
NextBio:20854482 Uniprot:E2R052
Length = 622
Score = 778 (278.9 bits), Expect = 2.7e-77, P = 2.7e-77
Identities = 176/439 (40%), Positives = 255/439 (58%)
Query: 180 IDYEPFNKDFYQDSASISGMSEQDVMEYKKSLAIRVSGFDVPRPVKTFEDCGFSTQLMHA 239
I Y+ K + + MSE+ +K I V G +P P+K+F++ F ++
Sbjct: 136 ITYDDPIKTSWTPPRYVLSMSEERHERVRKKYHILVEGDGIPPPIKSFKEMKFPAAILRG 195
Query: 240 ISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPE---LQKE 296
+ K+G PT IQ Q +P ILSGRD+IGIA TGSGKT F LP+I+ ++Q + K
Sbjct: 196 LKKKGIHHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVIMFCLEQEKRLPFSKR 255
Query: 297 EGPIGVICAPTRELAHQI------YLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCE 350
EGP G+I P+RELA Q Y + S +R + GGMS +Q + ++ G
Sbjct: 256 EGPYGLIICPSRELARQTHGILEYYCRLLQEDSSPLLRCALCIGGMSVKEQMETIRHGVH 315
Query: 351 IVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFS 410
+++ATPGRL+D+L+ K +++ YL LDEADRM D+GFE IR+I + RQTLLFS
Sbjct: 316 MMVATPGRLMDLLQKKMVSLDICRYLALDEADRMIDMGFEGDIRTIFSYFKGQRQTLLFS 375
Query: 411 ATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEKLPGMIDD 470
ATMP+K++ A+ L PV + VG G A+ D+ Q V + +A K+ +LLE L
Sbjct: 376 ATMPKKIQNFAKSALVKPVTINVGRAGAASLDVIQEVEYVKEEA-KMVYLLECLQKT--P 432
Query: 471 GDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVA 530
VL+FA KK VD I L KG +A A+HG KDQ R + ++ F+ G VL+ATDVA
Sbjct: 433 PPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFREGKKDVLVATDVA 492
Query: 531 ARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQK-EARFAGELVNS 589
++GLD +I+ V+N+D+ +++ +VHRIGRTGR+G+ G A T + + + +L
Sbjct: 493 SKGLDFPAIQHVINYDMPEEIENYVHRIGRTGRSGNT-GIATTFINKACDESVLMDLKAL 551
Query: 590 LIAAGQNVSMELMDLAMKD 608
L+ A Q V L L D
Sbjct: 552 LLEAKQKVPPVLQVLHCGD 570
>UNIPROTKB|J9NZF6 [details] [associations]
symbol:DDX41 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR001878 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00343 SMART:SM00490 GO:GO:0005524
GO:GO:0008270 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 OMA:KDQEERS EMBL:AAEX03002959
Ensembl:ENSCAFT00000042923 Uniprot:J9NZF6
Length = 649
Score = 778 (278.9 bits), Expect = 2.7e-77, P = 2.7e-77
Identities = 176/439 (40%), Positives = 255/439 (58%)
Query: 180 IDYEPFNKDFYQDSASISGMSEQDVMEYKKSLAIRVSGFDVPRPVKTFEDCGFSTQLMHA 239
I Y+ K + + MSE+ +K I V G +P P+K+F++ F ++
Sbjct: 163 ITYDDPIKTSWTPPRYVLSMSEERHERVRKKYHILVEGDGIPPPIKSFKEMKFPAAILRG 222
Query: 240 ISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPE---LQKE 296
+ K+G PT IQ Q +P ILSGRD+IGIA TGSGKT F LP+I+ ++Q + K
Sbjct: 223 LKKKGIHHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVIMFCLEQEKRLPFSKR 282
Query: 297 EGPIGVICAPTRELAHQI------YLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCE 350
EGP G+I P+RELA Q Y + S +R + GGMS +Q + ++ G
Sbjct: 283 EGPYGLIICPSRELARQTHGILEYYCRLLQEDSSPLLRCALCIGGMSVKEQMETIRHGVH 342
Query: 351 IVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFS 410
+++ATPGRL+D+L+ K +++ YL LDEADRM D+GFE IR+I + RQTLLFS
Sbjct: 343 MMVATPGRLMDLLQKKMVSLDICRYLALDEADRMIDMGFEGDIRTIFSYFKGQRQTLLFS 402
Query: 411 ATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEKLPGMIDD 470
ATMP+K++ A+ L PV + VG G A+ D+ Q V + +A K+ +LLE L
Sbjct: 403 ATMPKKIQNFAKSALVKPVTINVGRAGAASLDVIQEVEYVKEEA-KMVYLLECLQKT--P 459
Query: 471 GDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVA 530
VL+FA KK VD I L KG +A A+HG KDQ R + ++ F+ G VL+ATDVA
Sbjct: 460 PPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFREGKKDVLVATDVA 519
Query: 531 ARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQK-EARFAGELVNS 589
++GLD +I+ V+N+D+ +++ +VHRIGRTGR+G+ G A T + + + +L
Sbjct: 520 SKGLDFPAIQHVINYDMPEEIENYVHRIGRTGRSGNT-GIATTFINKACDESVLMDLKAL 578
Query: 590 LIAAGQNVSMELMDLAMKD 608
L+ A Q V L L D
Sbjct: 579 LLEAKQKVPPVLQVLHCGD 597
>UNIPROTKB|J3KNN5 [details] [associations]
symbol:DDX41 "Probable ATP-dependent RNA helicase DDX41"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR001878 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00343 SMART:SM00490 GO:GO:0005524
GO:GO:0008270 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
OMA:KDQEERS HGNC:HGNC:18674 ChiTaRS:DDX41 EMBL:AC145098
Ensembl:ENST00000330503 Uniprot:J3KNN5
Length = 640
Score = 778 (278.9 bits), Expect = 2.7e-77, P = 2.7e-77
Identities = 176/439 (40%), Positives = 255/439 (58%)
Query: 180 IDYEPFNKDFYQDSASISGMSEQDVMEYKKSLAIRVSGFDVPRPVKTFEDCGFSTQLMHA 239
I Y+ K + + MSE+ +K I V G +P P+K+F++ F ++
Sbjct: 154 ITYDDPIKTSWTPPRYVLSMSEERHERVRKKYHILVEGDGIPPPIKSFKEMKFPAAILRG 213
Query: 240 ISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPE---LQKE 296
+ K+G PT IQ Q +P ILSGRD+IGIA TGSGKT F LP+I+ ++Q + K
Sbjct: 214 LKKKGIHHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVIMFCLEQEKRLPFSKR 273
Query: 297 EGPIGVICAPTRELAHQI------YLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCE 350
EGP G+I P+RELA Q Y + S +R + GGMS +Q + ++ G
Sbjct: 274 EGPYGLIICPSRELARQTHGILEYYCRLLQEDSSPLLRCALCIGGMSVKEQMETIRHGVH 333
Query: 351 IVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFS 410
+++ATPGRL+D+L+ K +++ YL LDEADRM D+GFE IR+I + RQTLLFS
Sbjct: 334 MMVATPGRLMDLLQKKMVSLDICRYLALDEADRMIDMGFEGDIRTIFSYFKGQRQTLLFS 393
Query: 411 ATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEKLPGMIDD 470
ATMP+K++ A+ L PV + VG G A+ D+ Q V + +A K+ +LLE L
Sbjct: 394 ATMPKKIQNFAKSALVKPVTINVGRAGAASLDVIQEVEYVKEEA-KMVYLLECLQKT--P 450
Query: 471 GDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVA 530
VL+FA KK VD I L KG +A A+HG KDQ R + ++ F+ G VL+ATDVA
Sbjct: 451 PPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFREGKKDVLVATDVA 510
Query: 531 ARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQK-EARFAGELVNS 589
++GLD +I+ V+N+D+ +++ +VHRIGRTGR+G+ G A T + + + +L
Sbjct: 511 SKGLDFPAIQHVINYDMPEEIENYVHRIGRTGRSGNT-GIATTFINKACDESVLMDLKAL 569
Query: 590 LIAAGQNVSMELMDLAMKD 608
L+ A Q V L L D
Sbjct: 570 LLEAKQKVPPVLQVLHCGD 588
>UNIPROTKB|Q9UJV9 [details] [associations]
symbol:DDX41 "Probable ATP-dependent RNA helicase DDX41"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005783 "endoplasmic reticulum" evidence=IEA] [GO:0035458
"cellular response to interferon-beta" evidence=IEA] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0051607 "defense response to virus"
evidence=IEA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IDA] [GO:0007275 "multicellular organismal development"
evidence=TAS] [GO:0006396 "RNA processing" evidence=TAS]
[GO:0006915 "apoptotic process" evidence=TAS] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR001650 InterPro:IPR001878 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS50158
PROSITE:PS51194 SMART:SM00343 SMART:SM00490 GO:GO:0005783
GO:GO:0007275 GO:GO:0005524 GO:GO:0006915 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 GO:GO:0045944 GO:GO:0051607
GO:GO:0003723 GO:GO:0035458 GO:GO:0000398 GO:GO:0071013
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 EMBL:CH471195
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOVERGEN:HBG015893 KO:K13116 EMBL:AF195417 EMBL:AK001255
EMBL:AK027768 EMBL:AK315491 EMBL:BC015476 EMBL:AL137455
EMBL:BX641072 IPI:IPI00007208 PIR:T46269 RefSeq:NP_057306.2
UniGene:Hs.484288 PDB:2P6N PDBsum:2P6N ProteinModelPortal:Q9UJV9
SMR:Q9UJV9 IntAct:Q9UJV9 MINT:MINT-3081244 STRING:Q9UJV9
PhosphoSite:Q9UJV9 DMDM:20532370 PaxDb:Q9UJV9 PeptideAtlas:Q9UJV9
PRIDE:Q9UJV9 DNASU:51428 Ensembl:ENST00000507955 GeneID:51428
KEGG:hsa:51428 UCSC:uc003mhn.3 CTD:51428 GeneCards:GC05M176938
HGNC:HGNC:18674 HPA:HPA017911 MIM:608170 neXtProt:NX_Q9UJV9
PharmGKB:PA134908862 HOGENOM:HOG000268792 InParanoid:Q9UJV9
OrthoDB:EOG4CVG6K PhylomeDB:Q9UJV9 ChiTaRS:DDX41
EvolutionaryTrace:Q9UJV9 GenomeRNAi:51428 NextBio:54987
ArrayExpress:Q9UJV9 Bgee:Q9UJV9 CleanEx:HS_DDX41
Genevestigator:Q9UJV9 GermOnline:ENSG00000183258 Uniprot:Q9UJV9
Length = 622
Score = 778 (278.9 bits), Expect = 2.7e-77, P = 2.7e-77
Identities = 176/439 (40%), Positives = 255/439 (58%)
Query: 180 IDYEPFNKDFYQDSASISGMSEQDVMEYKKSLAIRVSGFDVPRPVKTFEDCGFSTQLMHA 239
I Y+ K + + MSE+ +K I V G +P P+K+F++ F ++
Sbjct: 136 ITYDDPIKTSWTPPRYVLSMSEERHERVRKKYHILVEGDGIPPPIKSFKEMKFPAAILRG 195
Query: 240 ISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPE---LQKE 296
+ K+G PT IQ Q +P ILSGRD+IGIA TGSGKT F LP+I+ ++Q + K
Sbjct: 196 LKKKGIHHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVIMFCLEQEKRLPFSKR 255
Query: 297 EGPIGVICAPTRELAHQI------YLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCE 350
EGP G+I P+RELA Q Y + S +R + GGMS +Q + ++ G
Sbjct: 256 EGPYGLIICPSRELARQTHGILEYYCRLLQEDSSPLLRCALCIGGMSVKEQMETIRHGVH 315
Query: 351 IVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFS 410
+++ATPGRL+D+L+ K +++ YL LDEADRM D+GFE IR+I + RQTLLFS
Sbjct: 316 MMVATPGRLMDLLQKKMVSLDICRYLALDEADRMIDMGFEGDIRTIFSYFKGQRQTLLFS 375
Query: 411 ATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEKLPGMIDD 470
ATMP+K++ A+ L PV + VG G A+ D+ Q V + +A K+ +LLE L
Sbjct: 376 ATMPKKIQNFAKSALVKPVTINVGRAGAASLDVIQEVEYVKEEA-KMVYLLECLQKT--P 432
Query: 471 GDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVA 530
VL+FA KK VD I L KG +A A+HG KDQ R + ++ F+ G VL+ATDVA
Sbjct: 433 PPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFREGKKDVLVATDVA 492
Query: 531 ARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQK-EARFAGELVNS 589
++GLD +I+ V+N+D+ +++ +VHRIGRTGR+G+ G A T + + + +L
Sbjct: 493 SKGLDFPAIQHVINYDMPEEIENYVHRIGRTGRSGNT-GIATTFINKACDESVLMDLKAL 551
Query: 590 LIAAGQNVSMELMDLAMKD 608
L+ A Q V L L D
Sbjct: 552 LLEAKQKVPPVLQVLHCGD 570
>TAIR|locus:2176192 [details] [associations]
symbol:AT5G51280 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA;ISS] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0000741 "karyogamy"
evidence=RCA] [GO:0009560 "embryo sac egg cell differentiation"
evidence=RCA] InterPro:IPR001650 InterPro:IPR001878
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS50158 PROSITE:PS51194 SMART:SM00343 SMART:SM00490
GO:GO:0005524 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0046872
GO:GO:0008270 GO:GO:0003723 Gene3D:4.10.60.10 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:AB023044 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 KO:K13116
OMA:DICRYLC HOGENOM:HOG000268792 EMBL:AK226380 IPI:IPI00530020
RefSeq:NP_199941.1 UniGene:At.29686 ProteinModelPortal:Q9LU46
SMR:Q9LU46 PaxDb:Q9LU46 PRIDE:Q9LU46 DNASU:835202
EnsemblPlants:AT5G51280.1 GeneID:835202 KEGG:ath:AT5G51280
GeneFarm:1011 TAIR:At5g51280 InParanoid:Q9LU46 PhylomeDB:Q9LU46
ProtClustDB:CLSN2685494 Genevestigator:Q9LU46 GermOnline:AT5G51280
Uniprot:Q9LU46
Length = 591
Score = 778 (278.9 bits), Expect = 2.7e-77, P = 2.7e-77
Identities = 186/451 (41%), Positives = 256/451 (56%)
Query: 165 EKKKIEPIPALDHSLIDYEPFNKDFYQDSASISGMSEQDVMEYKKSLAIRVSGFDVPRPV 224
+KK + + L + EP ++ I MS + +K I V+G D+P P+
Sbjct: 87 DKKTLMSVRELAKGITYTEPLLTG-WKPPLHIRKMSSKQRDLIRKQWHIIVNGDDIPPPI 145
Query: 225 KTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMI 284
K F+D F ++ + ++G +PT IQ Q LP+IL+GRD+IGIA TGSGKT FVLPMI
Sbjct: 146 KNFKDMKFPRPVLDTLKEKGIVQPTPIQVQGLPVILAGRDMIGIAFTGSGKTLVFVLPMI 205
Query: 285 VHIMDQPELQKE----EGPIGVICAPTRELAHQIYLETKKFAK---SHG---IRVSAVYG 334
+ I Q E+ EGPIG+I P+RELA Q Y ++F G +R G
Sbjct: 206 M-IALQEEMMMPIAAGEGPIGLIVCPSRELARQTYEVVEQFVAPLVEAGYPPLRSLLCIG 264
Query: 335 GMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIR 394
G+ Q + +K G IV+ATPGRL DML K +++ YL LDEADR+ DLGFE IR
Sbjct: 265 GIDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMSLDACRYLTLDEADRLVDLGFEDDIR 324
Query: 395 SIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDA 454
+ + RQTLLFSATMP K++ AR L PV V VG G AN D+ Q V + +A
Sbjct: 325 EVFDHFKSQRQTLLFSATMPTKIQIFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEA 384
Query: 455 EKLPWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQ 514
K+ +LLE L VL+F K VD+I L KG +A A+HG KDQ R +
Sbjct: 385 -KIVYLLECLQKT--SPPVLIFCENKADVDDIHEYLLLKGVEAVAIHGGKDQEDREYAIS 441
Query: 515 KFKSGVYHVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTL 574
FK+G VL+ATDVA++GLD I+ V+N+D+ +++ +VHRIGRTGR G K G A T
Sbjct: 442 SFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCG-KTGIATTF 500
Query: 575 VTQKEARFAG-ELVNSLIAAGQNVSMELMDL 604
+ + ++ +L + L A Q + L +L
Sbjct: 501 INKNQSETTLLDLKHLLQEAKQRIPPVLAEL 531
>DICTYBASE|DDB_G0277857 [details] [associations]
symbol:helB2 "putative U5 small nuclear
ribonucleoprotein" species:44689 "Dictyostelium discoideum"
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005681 "spliceosomal complex" evidence=ISS]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0000375 "RNA splicing, via transesterification reactions"
evidence=ISS] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
dictyBase:DDB_G0277857 GO:GO:0005524 GO:GO:0005737
GenomeReviews:CM000152_GR EMBL:AAFI02000023 GO:GO:0006397
GO:GO:0005681 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K12858 GO:GO:0000375 HSSP:P09052 EMBL:X81824
RefSeq:XP_642321.1 ProteinModelPortal:Q54Y81 STRING:Q54Y81
EnsemblProtists:DDB0219950 GeneID:8621527 KEGG:ddi:DDB_G0277857
OMA:DRYRDND Uniprot:Q54Y81
Length = 834
Score = 505 (182.8 bits), Expect = 3.3e-77, Sum P(3) = 3.3e-77
Identities = 97/213 (45%), Positives = 143/213 (67%)
Query: 188 DFYQDSASISGMSEQDVMEYKKSLAIRVSGFDVPRPVKTFEDCGFSTQLMHAISKQGYEK 247
D + + M+++D +K+ I G P P++T+++ +++ AI + GYEK
Sbjct: 376 DTHWSKKPLKSMTKRDWHIFKEDFNISTKGGIAPNPIRTWQESNLPREILEAIRQLGYEK 435
Query: 248 PTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKE---EGPIGVIC 304
P+ IQ Q++PI L+GRDI+GIA+TGSGKT AFV+PM+++I QP L K+ +GP ++
Sbjct: 436 PSPIQMQSIPISLTGRDILGIAETGSGKTCAFVIPMLIYISKQPRLTKDTEADGPYALVM 495
Query: 305 APTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLK 364
APTREL QI ET+ FA+ G RV ++ GG S DQ ++ GCEI+IATPGRL D L+
Sbjct: 496 APTRELVQQIEKETRNFAQHFGFRVVSLVGGQSIEDQAYQVSKGCEIIIATPGRLNDCLE 555
Query: 365 MKALTMSRVTYLVLDEADRMFDLGFEPQIRSIV 397
+ L +++ Y+VLDEAD M DLGFEPQ+ S++
Sbjct: 556 KRYLVLNQCNYIVLDEADMMIDLGFEPQVTSVL 588
Score = 319 (117.4 bits), Expect = 3.3e-77, Sum P(3) = 3.3e-77
Identities = 76/202 (37%), Positives = 111/202 (54%)
Query: 404 RQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEK 463
R T+LFSATMP VEKL+++ L P +T+GE G + I Q V + S+ +K E
Sbjct: 616 RTTILFSATMPPLVEKLSKKYLRRPCTITIGEAGKVVDRIRQTVIFVKSENDKK----EH 671
Query: 464 LPGMIDDGD---VLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGV 520
L +I DG +++F +KK D I L + LH + Q R L+ FK
Sbjct: 672 LTQLIKDGPPPPIIIFVNKKKHCDIIAPVLEECRVSYTILHSGRSQEQREAALEGFKKRK 731
Query: 521 YHVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEA 580
Y VLIAT VA+RG+ + + V+NFDI ++++ + HRIGRTGRAG G A + +T K+
Sbjct: 732 YEVLIATGVASRGIHVDGVTHVINFDIPKNIEDYTHRIGRTGRAGSA-GLASSFITDKDV 790
Query: 581 RFAGELVNSLIAAGQNVSMELM 602
+L L + V +EL+
Sbjct: 791 EIMYDLKQILTSTNNIVPIELL 812
Score = 44 (20.5 bits), Expect = 3.3e-77, Sum P(3) = 3.3e-77
Identities = 16/44 (36%), Positives = 20/44 (45%)
Query: 37 RYSH-DNYEDT-DLDNIDYEDN---DAAKAANDTGNGAEKEEID 75
R H D+Y D+ D D DY DN D + D G G + D
Sbjct: 79 RDDHRDDYRDSRDRDR-DYRDNGGRDRDRDYRDGGGGGGGRDRD 121
Score = 38 (18.4 bits), Expect = 1.4e-76, Sum P(3) = 1.4e-76
Identities = 11/32 (34%), Positives = 14/32 (43%)
Query: 35 SSRYSHDNYEDTDLDNIDYEDNDAAKAANDTG 66
SSR + E++ DY DND D G
Sbjct: 169 SSRRRDERRENSG--RRDYRDNDRRDDRRDNG 198
>TAIR|locus:2076436 [details] [associations]
symbol:AT3G58570 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA;ISS] [GO:0009507 "chloroplast" evidence=ISM]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
EMBL:AL137082 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268804 KO:K11594 OMA:KYERGGN EMBL:AY049285
EMBL:BT002731 EMBL:AY088132 IPI:IPI00518094 PIR:T45677
RefSeq:NP_191416.1 UniGene:At.831 ProteinModelPortal:Q9M2F9
SMR:Q9M2F9 STRING:Q9M2F9 PaxDb:Q9M2F9 PRIDE:Q9M2F9
EnsemblPlants:AT3G58570.1 GeneID:825026 KEGG:ath:AT3G58570
GeneFarm:1031 TAIR:At3g58570 InParanoid:Q9M2F9 PhylomeDB:Q9M2F9
ProtClustDB:CLSN2915471 Genevestigator:Q9M2F9 GermOnline:AT3G58570
Uniprot:Q9M2F9
Length = 646
Score = 776 (278.2 bits), Expect = 4.3e-77, P = 4.3e-77
Identities = 179/431 (41%), Positives = 251/431 (58%)
Query: 184 PFNKDFYQDSASISGMSEQDVMEYK--KSLAIRVSGFDVPRPVKTFEDCGFSTQLMHAIS 241
PF D D A E V+ ++ + + I SG +VP PV TF + L I
Sbjct: 105 PFGNDGNADPAV--NEQENTVINFEAYEDIPIETSGDNVPPPVNTFAEIDLGEALNLNIQ 162
Query: 242 KQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEG--- 298
+ Y KPT +Q A+PI+ +GRD++ A+TGSGKTAAF P+I IM +++ G
Sbjct: 163 RCKYVKPTPVQRNAIPILAAGRDLMACAQTGSGKTAAFCFPIISGIMKDQHIERPRGVRG 222
Query: 299 --PIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATP 356
P+ VI +PTRELA QI+ E +KF+ G++V YGG Q +EL+ G +I++ATP
Sbjct: 223 VYPLAVILSPTRELACQIHDEARKFSYQTGVKVVVAYGGTPVNQQIRELERGVDILVATP 282
Query: 357 GRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQI-RPD---RQTLLFSAT 412
GRL D+L+ +++ V +L LDEADRM D+GFEPQIR IV Q+ P RQT+LFSAT
Sbjct: 283 GRLNDLLERGRVSLQMVRFLALDEADRMLDMGFEPQIRKIVQQMDMPPPGVRQTMLFSAT 342
Query: 413 MPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEKLPGMIDDGD 472
PR++++LA + LS+ + + VG VG + + I Q V + D++K L++ L ++G+
Sbjct: 343 FPREIQRLASDFLSNYIFLAVGRVGSSTDLIVQRVEFV-HDSDKRSHLMDLLHAQRENGN 401
Query: 473 ------VLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIA 526
LVF K D +E+ L GF A +HGD+ Q R L+ FK+G +L+A
Sbjct: 402 QGKQALTLVFVETKKGADSLENWLCINGFPATTIHGDRSQQEREVALRSFKTGRTPILVA 461
Query: 527 TDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGEL 586
TDVAARGLDI + VVNFD+ D+D +VHRIGRTGRAG+ G A A L
Sbjct: 462 TDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGNS-GLATAFFNDNNTTMAKPL 520
Query: 587 VNSLIAAGQNV 597
+ A Q V
Sbjct: 521 AELMQEANQEV 531
>UNIPROTKB|O00571 [details] [associations]
symbol:DDX3X "ATP-dependent RNA helicase DDX3X"
species:9606 "Homo sapiens" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0019048 "virus-host interaction" evidence=IEA] [GO:0005741
"mitochondrial outer membrane" evidence=IEA] [GO:0016607 "nuclear
speck" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0030307 "positive
regulation of cell growth" evidence=IMP] [GO:0005852 "eukaryotic
translation initiation factor 3 complex" evidence=IDA] [GO:1900087
"positive regulation of G1/S transition of mitotic cell cycle"
evidence=IMP] [GO:0045948 "positive regulation of translational
initiation" evidence=IMP] [GO:0031333 "negative regulation of
protein complex assembly" evidence=IDA] [GO:0008190 "eukaryotic
initiation factor 4E binding" evidence=IDA] [GO:0017148 "negative
regulation of translation" evidence=IMP] [GO:0034063 "stress
granule assembly" evidence=IDA] [GO:0010494 "cytoplasmic stress
granule" evidence=IDA] [GO:0071470 "cellular response to osmotic
stress" evidence=IDA] [GO:0071243 "cellular response to
arsenic-containing substance" evidence=IDA] [GO:2001243 "negative
regulation of intrinsic apoptotic signaling pathway" evidence=IMP]
[GO:0007059 "chromosome segregation" evidence=IMP] [GO:0022627
"cytosolic small ribosomal subunit" evidence=IDA] [GO:0045727
"positive regulation of translation" evidence=IDA] [GO:0008143
"poly(A) RNA binding" evidence=IDA] [GO:0031369 "translation
initiation factor binding" evidence=IDA] [GO:0042256 "mature
ribosome assembly" evidence=IMP] [GO:0043024 "ribosomal small
subunit binding" evidence=IDA] [GO:0003723 "RNA binding"
evidence=IDA] [GO:0003677 "DNA binding" evidence=IDA] [GO:0016887
"ATPase activity" evidence=IDA] [GO:0004003 "ATP-dependent DNA
helicase activity" evidence=IDA] [GO:0004004 "ATP-dependent RNA
helicase activity" evidence=IDA] [GO:0045944 "positive regulation
of transcription from RNA polymerase II promoter" evidence=IMP;IDA]
[GO:0009615 "response to virus" evidence=IDA] [GO:0007243
"intracellular protein kinase cascade" evidence=IDA] [GO:0032728
"positive regulation of interferon-beta production" evidence=TAS]
[GO:0045087 "innate immune response" evidence=IMP] [GO:0071651
"positive regulation of chemokine (C-C motif) ligand 5 production"
evidence=TAS] [GO:0035613 "RNA stem-loop binding" evidence=IDA]
[GO:0010501 "RNA secondary structure unwinding" evidence=IDA]
[GO:0048027 "mRNA 5'-UTR binding" evidence=IDA] [GO:0008134
"transcription factor binding" evidence=IDA] [GO:0030308 "negative
regulation of cell growth" evidence=IDA] [GO:0008625 "extrinsic
apoptotic signaling pathway via death domain receptors"
evidence=IMP] [GO:0043066 "negative regulation of apoptotic
process" evidence=IMP] [GO:0043154 "negative regulation of
cysteine-type endopeptidase activity involved in apoptotic process"
evidence=IMP] [GO:0097193 "intrinsic apoptotic signaling pathway"
evidence=IMP] [GO:0043280 "positive regulation of cysteine-type
endopeptidase activity involved in apoptotic process" evidence=IMP]
[GO:0043065 "positive regulation of apoptotic process"
evidence=IMP] [GO:0005515 "protein binding" evidence=IPI]
[GO:0006200 "ATP catabolic process" evidence=IDA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0019048
GO:GO:0043066 GO:GO:0043154 GO:GO:0030307 GO:GO:0007059
GO:GO:0030308 GO:GO:0005741 GO:GO:0017148 GO:GO:0003677
GO:GO:0031333 GO:GO:0016607 GO:GO:0045944 GO:GO:0045087
GO:GO:0007243 GO:GO:0006351 GO:GO:0009615 GO:GO:0043065
GO:GO:0048027 GO:GO:0043280 GO:GO:0071470 GO:GO:0004003
GO:GO:0097193 GO:GO:1900087 GO:GO:0008134 EMBL:CH471141
GO:GO:0071243 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0010494 GO:GO:0034063 GO:GO:2001243 GO:GO:0008625
GO:GO:0045948 GO:GO:0004004 GO:GO:0042256 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0010501 GO:GO:0008143
KO:K11594 HOVERGEN:HBG015893 EMBL:U50553 EMBL:AF061337
EMBL:AF000983 EMBL:AF000982 EMBL:AK291153 EMBL:AK304689
EMBL:AL391647 EMBL:Z93015 EMBL:BC011819 IPI:IPI00215637
IPI:IPI00985384 RefSeq:NP_001180346.1 RefSeq:NP_001347.3
UniGene:Hs.380774 PDB:2I4I PDB:2JGN PDB:3JRV PDBsum:2I4I
PDBsum:2JGN PDBsum:3JRV ProteinModelPortal:O00571 SMR:O00571
DIP:DIP-27551N IntAct:O00571 MINT:MINT-93217 STRING:O00571
PhosphoSite:O00571 REPRODUCTION-2DPAGE:IPI00215637
SWISS-2DPAGE:O00571 PaxDb:O00571 PeptideAtlas:O00571 PRIDE:O00571
Ensembl:ENST00000399959 Ensembl:ENST00000457138 GeneID:1654
KEGG:hsa:1654 UCSC:uc004dfe.3 CTD:1654 GeneCards:GC0XP041192
HGNC:HGNC:2745 HPA:HPA001648 HPA:HPA005631 MIM:300160
neXtProt:NX_O00571 PharmGKB:PA27216 InParanoid:O00571 OMA:KYERGGN
OrthoDB:EOG47D9FV PhylomeDB:O00571 BindingDB:O00571
ChEMBL:CHEMBL5553 ChiTaRS:DDX3X EvolutionaryTrace:O00571
GenomeRNAi:1654 NextBio:6810 ArrayExpress:O00571 Bgee:O00571
CleanEx:HS_DDX3X Genevestigator:O00571 GermOnline:ENSG00000124487
GO:GO:0008190 GO:GO:0043024 GO:GO:0035613 GO:GO:0071651
GO:GO:0032728 Uniprot:O00571
Length = 662
Score = 753 (270.1 bits), Expect = 5.2e-77, Sum P(2) = 5.2e-77
Identities = 168/412 (40%), Positives = 247/412 (59%)
Query: 211 LAIRVSGFDVPRPVKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAK 270
+ + +G + P +++F D +M I Y +PT +Q A+PII RD++ A+
Sbjct: 166 IPVEATGNNCPPHIESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQ 225
Query: 271 TGSGKTAAFVLPMIVHIM-DQP----ELQKEEG--------PIGVICAPTRELAHQIYLE 317
TGSGKTAAF+LP++ I D P KE G PI ++ APTRELA QIY E
Sbjct: 226 TGSGKTAAFLLPILSQIYSDGPGEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEE 285
Query: 318 TKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLV 377
+KF+ +R VYGG Q ++L+ GC +++ATPGRL+DM++ + + YLV
Sbjct: 286 ARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLV 345
Query: 378 LDEADRMFDLGFEPQIRSIVGQ--IRPD--RQTLLFSATMPRKVEKLAREILSDPVRVTV 433
LDEADRM D+GFEPQIR IV Q + P R T++FSAT P++++ LAR+ L + + + V
Sbjct: 346 LDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAV 405
Query: 434 GEVGMANEDITQVVHVIPSDAEKLPWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQK 493
G VG +E+ITQ V V +++K +LL+ L D LVF K D +E L +
Sbjct: 406 GRVGSTSENITQKV-VWVEESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHE 464
Query: 494 GFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVNFDIARDMDM 553
G+ ++HGD+ Q R E L +F+SG +L+AT VAARGLDI ++K V+NFD+ D++
Sbjct: 465 GYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEE 524
Query: 554 HVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELVNSLIAAGQNVSMELMDLA 605
+VHRIGRTGR G+ G A + ++ +L++ L+ A Q V L ++A
Sbjct: 525 YVHRIGRTGRVGNL-GLATSFFNERNINITKDLLDLLVEAKQEVPSWLENMA 575
Score = 41 (19.5 bits), Expect = 5.2e-77, Sum P(2) = 5.2e-77
Identities = 13/44 (29%), Positives = 20/44 (45%)
Query: 695 SASAYANKRPALRGFVSGGSIGGDVNGTQTTGLTGFVSGGSIGG 738
S+S++++ R + SGG G G G GF + GG
Sbjct: 609 SSSSFSSSRASSSR--SGGGGHGSSRGFGGGGYGGFYNSDGYGG 650
>MGI|MGI:103064 [details] [associations]
symbol:Ddx3x "DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 3,
X-linked" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=ISO] [GO:0003723
"RNA binding" evidence=ISO] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=ISO] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISO] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISO] [GO:0005737 "cytoplasm" evidence=ISO]
[GO:0005739 "mitochondrion" evidence=IEA] [GO:0005741
"mitochondrial outer membrane" evidence=IEA] [GO:0006200 "ATP
catabolic process" evidence=IEA;ISO] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006417 "regulation
of translation" evidence=IEA] [GO:0006915 "apoptotic process"
evidence=IEA] [GO:0007059 "chromosome segregation" evidence=ISO]
[GO:0007243 "intracellular protein kinase cascade" evidence=ISO]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0008134 "transcription factor binding" evidence=ISO]
[GO:0008143 "poly(A) RNA binding" evidence=ISO] [GO:0008152
"metabolic process" evidence=IEA] [GO:0008190 "eukaryotic
initiation factor 4E binding" evidence=ISO] [GO:0008625 "extrinsic
apoptotic signaling pathway via death domain receptors"
evidence=ISO] [GO:0009615 "response to virus" evidence=ISO]
[GO:0010494 "cytoplasmic stress granule" evidence=ISO] [GO:0010501
"RNA secondary structure unwinding" evidence=ISO] [GO:0016020
"membrane" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0016887 "ATPase activity" evidence=ISO]
[GO:0017148 "negative regulation of translation" evidence=ISO]
[GO:0030307 "positive regulation of cell growth" evidence=ISO]
[GO:0030308 "negative regulation of cell growth" evidence=ISO]
[GO:0031333 "negative regulation of protein complex assembly"
evidence=ISO] [GO:0031369 "translation initiation factor binding"
evidence=ISO] [GO:0034063 "stress granule assembly" evidence=ISO]
[GO:0035613 "RNA stem-loop binding" evidence=ISO] [GO:0042254
"ribosome biogenesis" evidence=IEA] [GO:0042256 "mature ribosome
assembly" evidence=ISO] [GO:0043024 "ribosomal small subunit
binding" evidence=ISO] [GO:0043065 "positive regulation of
apoptotic process" evidence=ISO] [GO:0043066 "negative regulation
of apoptotic process" evidence=ISO] [GO:0043154 "negative
regulation of cysteine-type endopeptidase activity involved in
apoptotic process" evidence=ISO] [GO:0043280 "positive regulation
of cysteine-type endopeptidase activity involved in apoptotic
process" evidence=ISO] [GO:0045087 "innate immune response"
evidence=ISO] [GO:0045727 "positive regulation of translation"
evidence=ISO] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=ISO] [GO:0045948
"positive regulation of translational initiation" evidence=ISO]
[GO:0048027 "mRNA 5'-UTR binding" evidence=ISO] [GO:0071243
"cellular response to arsenic-containing substance" evidence=ISO]
[GO:0071470 "cellular response to osmotic stress" evidence=ISO]
[GO:0097193 "intrinsic apoptotic signaling pathway" evidence=ISO]
[GO:1900087 "positive regulation of G1/S transition of mitotic cell
cycle" evidence=ISO] [GO:2001243 "negative regulation of intrinsic
apoptotic signaling pathway" evidence=ISO] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 MGI:MGI:103064
GO:GO:0005524 GO:GO:0005634 GO:GO:0043066 GO:GO:0043154
GO:GO:0030307 GO:GO:0007059 GO:GO:0005741 GO:GO:0017148
GO:GO:0003677 GO:GO:0031333 GO:GO:0016607 GO:GO:0045944
GO:GO:0045087 GO:GO:0007243 GO:GO:0006351 GO:GO:0009615
GO:GO:0043065 GO:GO:0048027 GO:GO:0043280 GO:GO:0071470
GO:GO:0004003 GO:GO:0097193 GO:GO:1900087 GO:GO:0008134
GO:GO:0071243 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0010494 GO:GO:0034063 GO:GO:2001243 GO:GO:0008625
GO:GO:0045948 GO:GO:0004004 GO:GO:0042256 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0010501 GO:GO:0008143
GeneTree:ENSGT00620000087942 HOGENOM:HOG000268804 KO:K11594
HOVERGEN:HBG015893 CTD:1654 OrthoDB:EOG47D9FV ChiTaRS:DDX3X
GO:GO:0008190 GO:GO:0043024 GO:GO:0035613 EMBL:Z38117 EMBL:L25126
IPI:IPI00230035 PIR:I84741 RefSeq:NP_034158.1 UniGene:Mm.289662
ProteinModelPortal:Q62167 SMR:Q62167 IntAct:Q62167
MINT:MINT-1870173 STRING:Q62167 PhosphoSite:Q62167
REPRODUCTION-2DPAGE:Q62167 PaxDb:Q62167 PRIDE:Q62167
Ensembl:ENSMUST00000000804 GeneID:13205 KEGG:mmu:13205
InParanoid:Q62167 NextBio:283364 Bgee:Q62167 CleanEx:MM_ERH
Genevestigator:Q62167 GermOnline:ENSMUSG00000000787 Uniprot:Q62167
Length = 662
Score = 752 (269.8 bits), Expect = 5.2e-77, Sum P(2) = 5.2e-77
Identities = 168/414 (40%), Positives = 247/414 (59%)
Query: 211 LAIRVSGFDVPRPVKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAK 270
+ + +G + P +++F D +M I Y +PT +Q A+PII RD++ A+
Sbjct: 166 IPVEATGNNCPPHIESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQ 225
Query: 271 TGSGKTAAFVLPMIVHIM-DQP----ELQKEEG--------PIGVICAPTRELAHQIYLE 317
TGSGKTAAF+LP++ I D P KE G PI ++ APTRELA QIY E
Sbjct: 226 TGSGKTAAFLLPILSQIYADGPGEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEE 285
Query: 318 TKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLV 377
+KF+ +R VYGG Q ++L+ GC +++ATPGRL+DM++ + + YLV
Sbjct: 286 ARKFSYRSRVRPCVVYGGAEIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLV 345
Query: 378 LDEADRMFDLGFEPQIRSIVGQ--IRPD--RQTLLFSATMPRKVEKLAREILSDPVRVTV 433
LDEADRM D+GFEPQIR IV Q + P R T++FSAT P++++ LAR+ L + + + V
Sbjct: 346 LDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAV 405
Query: 434 GEVGMANEDITQVVHVIPSDAEKLPWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQK 493
G VG +E+ITQ V V + +K +LL+ L D LVF K D +E L +
Sbjct: 406 GRVGSTSENITQKV-VWVEEIDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHE 464
Query: 494 GFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVNFDIARDMDM 553
G+ ++HGD+ Q R E L +F+SG +L+AT VAARGLDI ++K V+NFD+ D++
Sbjct: 465 GYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEE 524
Query: 554 HVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELVNSLIAAGQNVSMELMDLAMK 607
+VHRIGRTGR G+ G A + ++ +L++ L+ A Q V L ++A +
Sbjct: 525 YVHRIGRTGRVGNL-GLATSFFNERNINITKDLLDLLVEAKQEVPSWLENMAFE 577
Score = 42 (19.8 bits), Expect = 5.2e-77, Sum P(2) = 5.2e-77
Identities = 14/44 (31%), Positives = 20/44 (45%)
Query: 695 SASAYANKRPALRGFVSGGSIGGDVNGTQTTGLTGFVSGGSIGG 738
S+S++++ R A GG GG G G GF + GG
Sbjct: 609 SSSSFSSSR-ASSSRSGGGGHGGS-RGFGGGGYGGFYNSDGYGG 650
>MGI|MGI:1920185 [details] [associations]
symbol:Ddx41 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 41"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IDA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0005783
"endoplasmic reticulum" evidence=IDA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0035458 "cellular response to
interferon-beta" evidence=IMP] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IDA]
[GO:0046872 "metal ion binding" evidence=IEA] [GO:0051607 "defense
response to virus" evidence=IMP] [GO:0071013 "catalytic step 2
spliceosome" evidence=ISO] InterPro:IPR001650 InterPro:IPR001878
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS50158 PROSITE:PS51194 SMART:SM00343 SMART:SM00490
MGI:MGI:1920185 GO:GO:0005783 GO:GO:0005524 GO:GO:0005634
GO:GO:0008380 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
GO:GO:0006397 GO:GO:0045944 GO:GO:0051607 GO:GO:0003723
GO:GO:0035458 GO:GO:0071013 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00620000087942 HOVERGEN:HBG015893
KO:K13116 OMA:KDQEERS CTD:51428 HOGENOM:HOG000268792
OrthoDB:EOG4CVG6K EMBL:AK156957 EMBL:BC011308 IPI:IPI00127071
RefSeq:NP_598820.2 UniGene:Mm.205045 ProteinModelPortal:Q91VN6
SMR:Q91VN6 IntAct:Q91VN6 STRING:Q91VN6 PhosphoSite:Q91VN6
PaxDb:Q91VN6 PRIDE:Q91VN6 Ensembl:ENSMUST00000021956 GeneID:72935
KEGG:mmu:72935 InParanoid:Q3U0E0 NextBio:337171 Bgee:Q91VN6
CleanEx:MM_DDX41 Genevestigator:Q91VN6
GermOnline:ENSMUSG00000021494 Uniprot:Q91VN6
Length = 622
Score = 775 (277.9 bits), Expect = 5.5e-77, P = 5.5e-77
Identities = 176/439 (40%), Positives = 255/439 (58%)
Query: 180 IDYEPFNKDFYQDSASISGMSEQDVMEYKKSLAIRVSGFDVPRPVKTFEDCGFSTQLMHA 239
I Y+ K + + MSE+ +K I V G +P P+K+F++ F ++
Sbjct: 136 ITYDDPIKTSWTPPRYVLSMSEERHERVRKKYHILVEGDGIPPPIKSFKEMKFPAAILRG 195
Query: 240 ISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPE---LQKE 296
+ K+G PT IQ Q +P ILSGRD+IGIA TGSGKT F LP+I+ ++Q + K
Sbjct: 196 LKKKGILHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVIMFCLEQEKRLPFSKR 255
Query: 297 EGPIGVICAPTRELAHQI------YLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCE 350
EGP G+I P+RELA Q Y + S +R + GGMS +Q + ++ G
Sbjct: 256 EGPYGLIICPSRELARQTHGILEYYCRLLQEDSSPLLRCALCIGGMSVKEQMETIRHGVH 315
Query: 351 IVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFS 410
+++ATPGRL+D+L+ K +++ YL LDEADRM D+GFE IR+I + RQTLLFS
Sbjct: 316 MMVATPGRLMDLLQKKMVSLDICRYLALDEADRMIDMGFEGDIRTIFSYFKGQRQTLLFS 375
Query: 411 ATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEKLPGMIDD 470
ATMP+K++ A+ L PV + VG G A+ D+ Q V + +A K+ +LLE L
Sbjct: 376 ATMPKKIQNFAKSALVKPVTINVGRAGAASLDVIQEVEYVKEEA-KMVYLLECLQKT--P 432
Query: 471 GDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVA 530
VL+FA KK VD I L KG +A A+HG KDQ R + ++ F+ G VL+ATDVA
Sbjct: 433 PPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFREGKKDVLVATDVA 492
Query: 531 ARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQK-EARFAGELVNS 589
++GLD +I+ V+N+D+ +++ +VHRIGRTGR+G+ G A T + + + +L
Sbjct: 493 SKGLDFPAIQHVINYDMPEEIENYVHRIGRTGRSGNT-GIATTFINKACDESVLMDLKAL 551
Query: 590 LIAAGQNVSMELMDLAMKD 608
L+ A Q V L L D
Sbjct: 552 LLEAKQKVPPVLQVLHCGD 570
>UNIPROTKB|J9P0V9 [details] [associations]
symbol:DDX3X "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 KO:K11594 CTD:1654 EMBL:AAEX03026295
RefSeq:XP_861268.1 Ensembl:ENSCAFT00000045177 GeneID:480886
KEGG:cfa:480886 Uniprot:J9P0V9
Length = 662
Score = 753 (270.1 bits), Expect = 6.6e-77, Sum P(2) = 6.6e-77
Identities = 168/412 (40%), Positives = 247/412 (59%)
Query: 211 LAIRVSGFDVPRPVKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAK 270
+ + +G + P +++F D +M I Y +PT +Q A+PII RD++ A+
Sbjct: 166 IPVEATGNNCPPHIESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQ 225
Query: 271 TGSGKTAAFVLPMIVHIM-DQP----ELQKEEG--------PIGVICAPTRELAHQIYLE 317
TGSGKTAAF+LP++ I D P KE G PI ++ APTRELA QIY E
Sbjct: 226 TGSGKTAAFLLPILSQIYSDGPGEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEE 285
Query: 318 TKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLV 377
+KF+ +R VYGG Q ++L+ GC +++ATPGRL+DM++ + + YLV
Sbjct: 286 ARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLV 345
Query: 378 LDEADRMFDLGFEPQIRSIVGQ--IRPD--RQTLLFSATMPRKVEKLAREILSDPVRVTV 433
LDEADRM D+GFEPQIR IV Q + P R T++FSAT P++++ LAR+ L + + + V
Sbjct: 346 LDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAV 405
Query: 434 GEVGMANEDITQVVHVIPSDAEKLPWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQK 493
G VG +E+ITQ V V +++K +LL+ L D LVF K D +E L +
Sbjct: 406 GRVGSTSENITQKV-VWVEESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHE 464
Query: 494 GFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVNFDIARDMDM 553
G+ ++HGD+ Q R E L +F+SG +L+AT VAARGLDI ++K V+NFD+ D++
Sbjct: 465 GYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEE 524
Query: 554 HVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELVNSLIAAGQNVSMELMDLA 605
+VHRIGRTGR G+ G A + ++ +L++ L+ A Q V L ++A
Sbjct: 525 YVHRIGRTGRVGNL-GLATSFFNERNINITKDLLDLLVEAKQEVPSWLENMA 575
Score = 40 (19.1 bits), Expect = 6.6e-77, Sum P(2) = 6.6e-77
Identities = 13/44 (29%), Positives = 19/44 (43%)
Query: 695 SASAYANKRPALRGFVSGGSIGGDVNGTQTTGLTGFVSGGSIGG 738
S+S++++ R SGG G G G GF + GG
Sbjct: 609 SSSSFSSSRAGSSR--SGGGGHGSSRGFGGGGYGGFYNSDGYGG 650
>RGD|1564771 [details] [associations]
symbol:Ddx3x "DEAD (Asp-Glu-Ala-Asp) box polypeptide 3,
X-linked" species:10116 "Rattus norvegicus" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 RGD:1564771 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00620000087942
OMA:KYERGGN OrthoDB:EOG47D9FV IPI:IPI00362534 PhosphoSite:D4ADE8
PRIDE:D4ADE8 Ensembl:ENSRNOT00000039551 UCSC:RGD:1564771
Uniprot:D4ADE8
Length = 662
Score = 752 (269.8 bits), Expect = 6.6e-77, Sum P(2) = 6.6e-77
Identities = 168/414 (40%), Positives = 247/414 (59%)
Query: 211 LAIRVSGFDVPRPVKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAK 270
+ + +G + P +++F D +M I Y +PT +Q A+PII RD++ A+
Sbjct: 166 IPVEATGNNCPPHIESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQ 225
Query: 271 TGSGKTAAFVLPMIVHIM-DQP----ELQKEEG--------PIGVICAPTRELAHQIYLE 317
TGSGKTAAF+LP++ I D P KE G PI ++ APTRELA QIY E
Sbjct: 226 TGSGKTAAFLLPILSQIYADGPGEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEE 285
Query: 318 TKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLV 377
+KF+ +R VYGG Q ++L+ GC +++ATPGRL+DM++ + + YLV
Sbjct: 286 ARKFSYRSRVRPCVVYGGAEIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLV 345
Query: 378 LDEADRMFDLGFEPQIRSIVGQ--IRPD--RQTLLFSATMPRKVEKLAREILSDPVRVTV 433
LDEADRM D+GFEPQIR IV Q + P R T++FSAT P++++ LAR+ L + + + V
Sbjct: 346 LDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAV 405
Query: 434 GEVGMANEDITQVVHVIPSDAEKLPWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQK 493
G VG +E+ITQ V V + +K +LL+ L D LVF K D +E L +
Sbjct: 406 GRVGSTSENITQKV-VWVEEIDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHE 464
Query: 494 GFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVNFDIARDMDM 553
G+ ++HGD+ Q R E L +F+SG +L+AT VAARGLDI ++K V+NFD+ D++
Sbjct: 465 GYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEE 524
Query: 554 HVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELVNSLIAAGQNVSMELMDLAMK 607
+VHRIGRTGR G+ G A + ++ +L++ L+ A Q V L ++A +
Sbjct: 525 YVHRIGRTGRVGNL-GLATSFFNERNINITKDLLDLLVEAKQEVPSWLENMAFE 577
Score = 41 (19.5 bits), Expect = 6.6e-77, Sum P(2) = 6.6e-77
Identities = 13/44 (29%), Positives = 20/44 (45%)
Query: 695 SASAYANKRPALRGFVSGGSIGGDVNGTQTTGLTGFVSGGSIGG 738
S+S++++ R + SGG G G G GF + GG
Sbjct: 609 SSSSFSSSRASSSR--SGGGGHGSSRGFGGGGYGGFYNSDGYGG 650
>ZFIN|ZDB-GENE-030131-1565 [details] [associations]
symbol:ddx3 "DEAD (Asp-Glu-Ala-Asp) box
polypeptide 3" species:7955 "Danio rerio" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 ZFIN:ZDB-GENE-030131-1565 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00620000087942
KO:K11594 HOVERGEN:HBG015893 EMBL:BX545856 IPI:IPI00639693
RefSeq:NP_001119895.1 UniGene:Dr.104653 SMR:B0S6P6
Ensembl:ENSDART00000006867 GeneID:566947 KEGG:dre:566947 CTD:566947
OMA:IIMGNIN NextBio:20888452 Uniprot:B0S6P6
Length = 709
Score = 641 (230.7 bits), Expect = 8.5e-77, Sum P(2) = 8.5e-77
Identities = 137/317 (43%), Positives = 202/317 (63%)
Query: 293 LQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIV 352
+++++ PI ++ APTRELA QIY E +KFA +R VYGG Q ++L+ GC ++
Sbjct: 309 VRRKQYPISLVLAPTRELALQIYDEARKFAYRSRVRPCVVYGGADIGQQIRDLERGCHLL 368
Query: 353 IATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQ--IRP--DRQTLL 408
+ATPGRL+DM++ + + YLVLDEADRM D+GFEPQIR IV Q + P RQT++
Sbjct: 369 VATPGRLVDMMERGKIGLDYCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGSRQTMM 428
Query: 409 FSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEKLPGMI 468
FSAT P++++ LAR+ L + + + VG VG +E+ITQ V V + +K +LL+ L
Sbjct: 429 FSATFPKEIQILARDFLEEYIFLAVGRVGSTSENITQKV-VWVEENDKRSFLLDLLNATG 487
Query: 469 DDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATD 528
D LVF K D +E L ++G+ ++HGD+ Q R E L +F+SG +++AT
Sbjct: 488 KDSLTLVFVETKKGADALEDFLYREGYACTSIHGDRSQRDREEALHQFRSGRCPIMVATA 547
Query: 529 VAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELVN 588
VAARGLDI ++K V+NFD+ D++ +VHRIGRTGR G+ G A + K + +L++
Sbjct: 548 VAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNL-GLATSFYNDKNSNITKDLLD 606
Query: 589 SLIAAGQNVSMELMDLA 605
L+ A Q V L +LA
Sbjct: 607 ILVEAKQEVPSWLENLA 623
Score = 151 (58.2 bits), Expect = 8.5e-77, Sum P(2) = 8.5e-77
Identities = 34/98 (34%), Positives = 57/98 (58%)
Query: 193 SASISGMSEQDVMEYKKSLAIRVSGFDVPRPVKTFEDCGFSTQLMHAISKQGYEKPTSIQ 252
SAS +G++ E + + +G + P +++F D +M I+ Y +PT +Q
Sbjct: 195 SASNTGIN----FEKYDDIPVEATGTNSPGHIESFHDVDMGEIIMGNITLSRYTRPTPVQ 250
Query: 253 CQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQ 290
A+PII + RD++ A+TGSGKTAAF+LP++ I +
Sbjct: 251 KYAIPIIKTKRDLMACAQTGSGKTAAFLLPVLSQIYSE 288
>CGD|CAL0005460 [details] [associations]
symbol:DBP3 species:5476 "Candida albicans" [GO:0005730
"nucleolus" evidence=IEA] [GO:0030687 "preribosome, large subunit
precursor" evidence=IEA] [GO:0000464 "endonucleolytic cleavage in
ITS1 upstream of 5.8S rRNA from tricistronic rRNA transcript
(SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA] [GO:0008186
"RNA-dependent ATPase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 CGD:CAL0005460
GO:GO:0005524 GO:GO:0005730 GO:GO:0003723 EMBL:AACQ01000001
EMBL:AACQ01000002 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 RefSeq:XP_723365.1 RefSeq:XP_723554.1
ProteinModelPortal:Q5APT8 STRING:Q5APT8 GeneID:3634868
GeneID:3635070 KEGG:cal:CaO19.12334 KEGG:cal:CaO19.4870 KO:K14811
Uniprot:Q5APT8
Length = 564
Score = 772 (276.8 bits), Expect = 1.1e-76, P = 1.1e-76
Identities = 180/422 (42%), Positives = 256/422 (60%)
Query: 190 YQDSASISGMSEQDVMEYKKSLAIRVS--GFDVPRPVKTFEDCGFSTQLMHAISKQGYEK 247
Y S+ +S +S+ D+ ++ I V RP+ +F+ ++ + +SK ++K
Sbjct: 118 YTQSSKLSSVSQSDIDKFLSDNEITVEDPSSSSLRPILSFDQVQLTSAITSKLSK--FDK 175
Query: 248 PTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVIC-AP 306
PT IQ + P +LSG+D+IG+A+TGSGKT AF +P I +I+ + + V+C +P
Sbjct: 176 PTPIQSVSWPFLLSGKDVIGVAETGSGKTFAFGVPAINNIITTGNTKT----LSVLCISP 231
Query: 307 TRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMK 366
TRELA QIY + G+ AVYGG+SK DQ +++K +V+ATPGRL+D++
Sbjct: 232 TRELALQIYDNLIELTADSGVNCVAVYGGVSKDDQIRKIKTA-NVVVATPGRLVDLINDG 290
Query: 367 ALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQI-RPDRQTLLFSATMPRKVEKLAREIL 425
A+ + +V YLVLDEADRM + GFE I++I+ +RQTL+F+AT P++V +LA +
Sbjct: 291 AINLGKVNYLVLDEADRMLEKGFEEDIKTIISNTSNSERQTLMFTATWPKEVRELANNFM 350
Query: 426 SDPVRVTVGEVG--MANEDITQVVHVIPS-DAEK-LPWLLEKL-PGMIDDGDVLVFASKK 480
+ PV+VTVG+ AN+ ITQVV VI D EK L LL K D +L+FA K
Sbjct: 351 NSPVKVTVGDRDELSANKRITQVVEVINKFDKEKKLIQLLRKYNANESSDNKILIFALYK 410
Query: 481 TTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIK 540
IE+ L + F AA+HGD Q R L FKSG ++L+ATDVAARGLDI ++K
Sbjct: 411 KEASRIENFLKRNRFSVAAIHGDLSQQQRTAALSAFKSGQSNLLLATDVAARGLDIPNVK 470
Query: 541 SVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELVNSLIAAGQNVSME 600
V+N ++ +VHRIGRTGRAG K GTA+TL T+ E +G L N L A Q V E
Sbjct: 471 VVINLTFPLTIEDYVHRIGRTGRAGAK-GTAHTLFTEDEKHLSGALCNILRGANQPVPEE 529
Query: 601 LM 602
L+
Sbjct: 530 LL 531
>DICTYBASE|DDB_G0287361 [details] [associations]
symbol:ddx41 "DEAD box protein abstrakt"
species:44689 "Dictyostelium discoideum" [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] [GO:0006396 "RNA processing" evidence=ISS] [GO:0046872
"metal ion binding" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR001650 InterPro:IPR001878
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS50158
PROSITE:PS51194 SMART:SM00343 SMART:SM00490 dictyBase:DDB_G0287361
GO:GO:0005524 GO:GO:0005634 GO:GO:0046872 GO:GO:0008270
GenomeReviews:CM000154_GR GO:GO:0003723 GO:GO:0006396
EMBL:AAFI02000100 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HSSP:P09052 RefSeq:XP_637262.1 ProteinModelPortal:Q54KG1 SMR:Q54KG1
IntAct:Q54KG1 EnsemblProtists:DDB0233452 GeneID:8626092
KEGG:ddi:DDB_G0287361 KO:K13116 OMA:DICRYLC Uniprot:Q54KG1
Length = 671
Score = 771 (276.5 bits), Expect = 1.5e-76, P = 1.5e-76
Identities = 180/463 (38%), Positives = 263/463 (56%)
Query: 156 DSDDNPVVVEKKKIEPIPALDHSLID--YEPFNKDFYQDSASISGMSEQDVMEYKKSLAI 213
D +++ ++ K +P+ ++ D Y K ++ I E+D + + L I
Sbjct: 151 DMEESDILKSLKTFKPLVSVKDRAKDVIYTDSIKTNWRAPRYILERDEKDHQKVRDQLNI 210
Query: 214 RVSGFDVPRPVKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGS 273
G D+P P+ TF++ ++ + ++G +KP+ IQ Q LP+ILSGRD+IGIA TGS
Sbjct: 211 ITDGEDIPPPITTFKEMKIPKPVIDVLLEKGIKKPSPIQVQGLPVILSGRDMIGIAYTGS 270
Query: 274 GKTAAFVLPMIVHIMDQ----PELQKEEGPIGVICAPTRELAHQIYLETKKFA----KSH 325
GKT F LPM++ +++ P +Q E GP G+I P+RELA Q Y F K+
Sbjct: 271 GKTLVFTLPMVLFALEEECKLPIIQGE-GPFGLILCPSRELARQTYDLVNSFTNALHKNG 329
Query: 326 G---IRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEAD 382
G +R GG+ +Q K G ++IATPGRL+D+L K + YL LDEAD
Sbjct: 330 GHPQLRTLLAIGGIDLREQEHIFKKGVHMIIATPGRLLDLLNKKKINFKLCKYLGLDEAD 389
Query: 383 RMFDLGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANED 442
R+ DLGFE IRS++ RQTLLFSATMP+K+++ AR L PV V VG G AN +
Sbjct: 390 RLIDLGFEDDIRSVLDNFTNQRQTLLFSATMPKKIQEFARSALVLPVEVNVGRAGAANLN 449
Query: 443 ITQVVHVIPSDAEKLPWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHG 502
+TQ V + +A K+ +LLE L VL+F K VD+I L K +A ++HG
Sbjct: 450 VTQEVEFVKPEA-KIVYLLECLQKT--PPPVLIFCENKKDVDDIYEYLLLKQVEAVSIHG 506
Query: 503 DKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTG 562
DK Q R ++ F+ G VL+ATDVA++GLD I+ V+NFD+ R+++ ++HRIGRTG
Sbjct: 507 DKSQDERESAIKAFREGKKDVLVATDVASKGLDFPEIQHVINFDMPREIENYIHRIGRTG 566
Query: 563 RAGDKDGTAYTLVTQKEAR-FAGELVNSLIAAGQNVSMELMDL 604
R G+K G A T + + +L LI A Q V L+++
Sbjct: 567 RRGNK-GVATTFINKNNTESLLLDLKYLLIEAKQKVPPALLEI 608
>UNIPROTKB|Q86TM3 [details] [associations]
symbol:DDX53 "Probable ATP-dependent RNA helicase DDX53"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR011545
Pfam:PF00013 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS50084 PROSITE:PS51194 SMART:SM00322 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268804
HOVERGEN:HBG015893 OrthoDB:EOG43BMNQ EMBL:AY039237 EMBL:BC051703
EMBL:BC067878 IPI:IPI00328813 PIR:JC7831 RefSeq:NP_874358.2
UniGene:Hs.434416 PDB:3IUY PDBsum:3IUY ProteinModelPortal:Q86TM3
SMR:Q86TM3 STRING:Q86TM3 PhosphoSite:Q86TM3 DMDM:143811384
PaxDb:Q86TM3 PRIDE:Q86TM3 Ensembl:ENST00000327968 GeneID:168400
KEGG:hsa:168400 UCSC:uc004daj.3 CTD:168400 GeneCards:GC0XP023018
HGNC:HGNC:20083 HPA:HPA003186 neXtProt:NX_Q86TM3
PharmGKB:PA134863598 InParanoid:Q86TM3 OMA:GLKSICI
EvolutionaryTrace:Q86TM3 GenomeRNAi:168400 NextBio:88718
Bgee:Q86TM3 CleanEx:HS_DDX53 Genevestigator:Q86TM3
GermOnline:ENSG00000184735 Uniprot:Q86TM3
Length = 631
Score = 770 (276.1 bits), Expect = 1.9e-76, P = 1.9e-76
Identities = 165/435 (37%), Positives = 264/435 (60%)
Query: 181 DYEPFNKDFYQDSASISGMSEQDVMEYKK-SLAIRV----SGFD--VPRPVKTFEDCGFS 233
D P K+FY +S + S MSE V+ ++K + I SG +P+P F+D F
Sbjct: 170 DLPPVKKNFYIESKATSCMSEMQVINWRKENFNITCDDLKSGEKRLIPKPTCRFKDA-FQ 228
Query: 234 T--QLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQP 291
L+ +I + G KPT IQ QA PIIL G D+I +A+TG+GKT ++++P +H+ QP
Sbjct: 229 QYPDLLKSIIRVGIVKPTPIQSQAWPIILQGIDLIVVAQTGTGKTLSYLMPGFIHLDSQP 288
Query: 292 -ELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCE 350
++ GP ++ PTRELA + E K++ G++ +YGG ++ Q +++ G +
Sbjct: 289 ISREQRNGPGMLVLTPTRELALHVEAECSKYSYK-GLKSICIYGGRNRNGQIEDISKGVD 347
Query: 351 IVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFS 410
I+IATPGRL D+ ++ + +TYLV+DEAD+M D+ FEPQIR I+ +RPDRQT++ S
Sbjct: 348 IIIATPGRLNDLQMNNSVNLRSITYLVIDEADKMLDMEFEPQIRKILLDVRPDRQTVMTS 407
Query: 411 ATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEKLPGMIDD 470
AT P V +LA L DP+ V VG + + + + ++ ++ EK E + M +
Sbjct: 408 ATWPDTVRQLALSYLKDPMIVYVGNLNLVAVNTVKQNIIVTTEKEKRALTQEFVENMSPN 467
Query: 471 GDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVA 530
V++F S+K D++ S +G A +LHG+ +Q+ + ++ FKSG +LI TD+
Sbjct: 468 DKVIMFVSQKHIADDLSSDFNIQGISAESLHGNSEQSDQERAVEDFKSGNIKILITTDIV 527
Query: 531 ARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELVNSL 590
+RGLD+ + V N+D R++D++VHR+G GR G K GT+ TL+TQ++++ AGEL+ L
Sbjct: 528 SRGLDLNDVTHVYNYDFPRNIDVYVHRVGYIGRTG-KTGTSVTLITQRDSKMAGELIKIL 586
Query: 591 IAAGQNVSMELMDLA 605
A Q+V +L+ +A
Sbjct: 587 DRANQSVPEDLVVMA 601
>SGD|S000006040 [details] [associations]
symbol:DBP1 "Putative ATP-dependent RNA helicase of the
DEAD-box protein family" species:4932 "Saccharomyces cerevisiae"
[GO:0005737 "cytoplasm" evidence=IEA;IDA] [GO:0006413
"translational initiation" evidence=IEA;IMP] [GO:0003724 "RNA
helicase activity" evidence=ISS] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003743
"translation initiation factor activity" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006412 "translation" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 SGD:S000006040 GO:GO:0005524
GO:GO:0005737 GO:GO:0006413 EMBL:BK006949 GO:GO:0003743 EMBL:U43503
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195
EMBL:X55993 PIR:S62003 RefSeq:NP_015206.1 ProteinModelPortal:P24784
SMR:P24784 DIP:DIP-2576N IntAct:P24784 MINT:MINT-426870
STRING:P24784 PaxDb:P24784 EnsemblFungi:YPL119C GeneID:855984
KEGG:sce:YPL119C CYGD:YPL119c GeneTree:ENSGT00620000087942
HOGENOM:HOG000268804 KO:K11594 OMA:DELLMEN OrthoDB:EOG4XPTQ4
NextBio:980825 Genevestigator:P24784 GermOnline:YPL119C
Uniprot:P24784
Length = 617
Score = 742 (266.3 bits), Expect = 2.2e-76, Sum P(2) = 2.2e-76
Identities = 183/491 (37%), Positives = 267/491 (54%)
Query: 134 GYDSDEEVYAAAKAVDAGMLDYDSDDNPVVVEKKKIEPIPALDHSLIDYEPFNKDFYQDS 193
G+ + +A G +Y S N V K IP ++ ++ E F D
Sbjct: 72 GFSKERNGGTSANYNRGGSSNYKSSGNRWVNGKH----IPGPKNAKLEAELFGVHDDPDY 127
Query: 194 ASISGMSEQDVMEYKKSLAIRVSGFDVPRPVKTFEDCGFSTQLMHAISKQGYEKPTSIQC 253
S SG+ + Y ++ + SG DVP P+ F LM I + KPT +Q
Sbjct: 128 HS-SGIKFDN---YD-NIPVDASGKDVPEPILDFSSPPLDELLMENIKLASFTKPTPVQK 182
Query: 254 QALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQ-----PE----LQKEEG-PIGVI 303
++PI+ GRD++ A+TGSGKT F+ P+ + PE +G P ++
Sbjct: 183 YSIPIVTKGRDLMACAQTGSGKTGGFLFPLFTELFRSGPSPVPEKAQSFYSRKGYPSALV 242
Query: 304 CAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDML 363
APTRELA QI+ E +KF +R VYGG +Q +E+ GC++++ATPGRL D+L
Sbjct: 243 LAPTRELATQIFEEARKFTYRSWVRPCVVYGGAPIGNQMREVDRGCDLLVATPGRLNDLL 302
Query: 364 KMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQI-RP---DRQTLLFSATMPRKVEK 419
+ ++++ + YLVLDEADRM D+GFEPQIR IV + P +RQTL+FSAT P ++
Sbjct: 303 ERGKVSLANIKYLVLDEADRMLDMGFEPQIRHIVEECDMPSVENRQTLMFSATFPVDIQH 362
Query: 420 LAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEKLPGMIDDGDVLVFASK 479
LAR+ L + + ++VG VG +E+ITQ + + D +K LL+ L G L+F
Sbjct: 363 LARDFLDNYIFLSVGRVGSTSENITQRILYV-DDMDKKSALLDLLSAE-HKGLTLIFVET 420
Query: 480 KTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSI 539
K D++ L + FKA A+HGD+ QA R L FK+ V +L+AT VAARGLDI ++
Sbjct: 421 KRMADQLTDFLIMQNFKATAIHGDRTQAERERALSAFKANVADILVATAVAARGLDIPNV 480
Query: 540 KSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELVNSLIAAGQNVSM 599
V+N+D+ D+D +VHRIGRTGRAG+ G A + L+ L A Q V
Sbjct: 481 THVINYDLPSDIDDYVHRIGRTGRAGNT-GVATSFFNSNNQNIVKGLMEILNEANQEVPT 539
Query: 600 ELMDLAMKDGR 610
L DL+ ++ R
Sbjct: 540 FLSDLSRQNSR 550
Score = 46 (21.3 bits), Expect = 2.2e-76, Sum P(2) = 2.2e-76
Identities = 18/78 (23%), Positives = 36/78 (46%)
Query: 652 NTSSQSVPSRSAAVNSLKT-GMMTQFRSNFVAASSNTPSEGFNNSAS-AYANKRPALRGF 709
N ++Q VP+ + ++ + G T+ F + +N + + + ++ + RP G
Sbjct: 531 NEANQEVPTFLSDLSRQNSRGGRTRGGGGFFNSRNNGSRDYRKHGGNGSFGSTRPRNTGT 590
Query: 710 VSGGSIGGDV-NGTQTTG 726
+ GSIGG N + G
Sbjct: 591 SNWGSIGGGFRNDNEKNG 608
>RGD|1311758 [details] [associations]
symbol:Ddx41 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 41"
species:10116 "Rattus norvegicus" [GO:0003677 "DNA binding"
evidence=IEA;ISO] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISO] [GO:0005783 "endoplasmic
reticulum" evidence=IEA;ISO] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0035458 "cellular response to interferon-beta"
evidence=IEA;ISO] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IEA;ISO] [GO:0051607
"defense response to virus" evidence=IEA;ISO] [GO:0071013
"catalytic step 2 spliceosome" evidence=IEA;ISO] [GO:0005730
"nucleolus" evidence=ISO] InterPro:IPR001650 InterPro:IPR001878
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00343 SMART:SM00490 RGD:1311758 GO:GO:0005783 GO:GO:0005524
GO:GO:0003677 GO:GO:0008270 GO:GO:0045944 GO:GO:0051607
GO:GO:0035458 GO:GO:0071013 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 EMBL:CH474032 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00620000087942
HOVERGEN:HBG015893 KO:K13116 CTD:51428 HOGENOM:HOG000268792
OrthoDB:EOG4CVG6K EMBL:BC166825 IPI:IPI00565869
RefSeq:NP_001101516.1 UniGene:Rn.114971 SMR:B2RYL8
Ensembl:ENSRNOT00000018114 GeneID:314336 KEGG:rno:314336
UCSC:RGD:1311758 NextBio:667511 Genevestigator:B2RYL8
Uniprot:B2RYL8
Length = 622
Score = 769 (275.8 bits), Expect = 2.4e-76, P = 2.4e-76
Identities = 175/439 (39%), Positives = 254/439 (57%)
Query: 180 IDYEPFNKDFYQDSASISGMSEQDVMEYKKSLAIRVSGFDVPRPVKTFEDCGFSTQLMHA 239
I Y+ K + + MSE+ +K I V G +P P+K+F++ ++
Sbjct: 136 ITYDDPIKTSWTPPRYVLSMSEERHERVRKKYHILVEGDGIPPPIKSFKEMKLPAAILRG 195
Query: 240 ISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPE---LQKE 296
+ K+G PT IQ Q +P ILSGRD+IGIA TGSGKT F LP+I+ ++Q + K
Sbjct: 196 LKKKGILHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVIMFCLEQEKRLPFSKR 255
Query: 297 EGPIGVICAPTRELAHQI------YLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCE 350
EGP G+I P+RELA Q Y + S +R + GGMS +Q + ++ G
Sbjct: 256 EGPYGLIICPSRELARQTHGILEYYCRLLQEDSSPLLRCALCIGGMSVKEQMETIRHGVH 315
Query: 351 IVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFS 410
+++ATPGRL+D+L+ K +++ YL LDEADRM D+GFE IR+I + RQTLLFS
Sbjct: 316 MMVATPGRLMDLLQKKMVSLDICRYLALDEADRMIDMGFEGDIRTIFSYFKGQRQTLLFS 375
Query: 411 ATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEKLPGMIDD 470
ATMP+K++ A+ L PV + VG G A+ D+ Q V + +A K+ +LLE L
Sbjct: 376 ATMPKKIQNFAKSALVKPVTINVGRAGAASLDVIQEVEYVKEEA-KMVYLLECLQKT--P 432
Query: 471 GDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVA 530
VL+FA KK VD I L KG +A A+HG KDQ R + ++ F+ G VL+ATDVA
Sbjct: 433 PPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFREGKKDVLVATDVA 492
Query: 531 ARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQK-EARFAGELVNS 589
++GLD +I+ V+N+D+ +++ +VHRIGRTGR+G+ G A T + + + +L
Sbjct: 493 SKGLDFPAIQHVINYDMPEEIENYVHRIGRTGRSGNT-GIATTFINKACDESVLMDLKAL 551
Query: 590 LIAAGQNVSMELMDLAMKD 608
L+ A Q V L L D
Sbjct: 552 LLEAKQKVPPVLQVLHCGD 570
>TAIR|locus:2119176 [details] [associations]
symbol:AT4G33370 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA;ISS] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0008270
"zinc ion binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR001878 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS50158 PROSITE:PS51194 SMART:SM00343
SMART:SM00490 GO:GO:0005524 EMBL:CP002687 GenomeReviews:CT486007_GR
GO:GO:0046872 GO:GO:0008270 EMBL:AL035678 EMBL:AL161583
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K13116 HOGENOM:HOG000268792 ProtClustDB:CLSN2685494
IPI:IPI00545227 PIR:T05988 RefSeq:NP_195063.1 UniGene:At.65448
ProteinModelPortal:Q9SZB4 SMR:Q9SZB4 PaxDb:Q9SZB4 PRIDE:Q9SZB4
EnsemblPlants:AT4G33370.1 GeneID:829474 KEGG:ath:AT4G33370
GeneFarm:1022 TAIR:At4g33370 InParanoid:Q9SZB4 OMA:MEETETI
PhylomeDB:Q9SZB4 Genevestigator:Q9SZB4 GermOnline:AT4G33370
Uniprot:Q9SZB4
Length = 542
Score = 769 (275.8 bits), Expect = 2.4e-76, P = 2.4e-76
Identities = 180/450 (40%), Positives = 254/450 (56%)
Query: 165 EKKKIEPIPALDHSLIDYEPFNKDFYQDSASISGMSEQDVMEYKKSLAIRVSGFDVPRPV 224
+KKK+ + L + EP + +++ + MS + + +K I V+G D+P P+
Sbjct: 38 DKKKLMSVGELARGITYTEPLST-WWKPPLHVRKMSTKQMDLIRKQWHITVNGEDIPPPI 96
Query: 225 KTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMI 284
K F D F + L+ + +G PT IQ Q LP++LSGRD+IGIA TGSGKT FVLPMI
Sbjct: 97 KNFMDMKFPSPLLRMLKDKGIMHPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMI 156
Query: 285 VHIMDQP---ELQKEEGPIGVICAPTRELAHQIYLETKKFAKS---HG---IRVSAVYGG 335
+ + + + EGPI ++ P+RELA Q Y ++F S G +R GG
Sbjct: 157 ILALQEEIMMPIAAGEGPIALVICPSRELAKQTYDVVEQFVASLVEDGYPRLRSLLCIGG 216
Query: 336 MSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRS 395
+ Q +K G IV+ATPGRL D+L K +++ L LDEADR+ DLGFE IR
Sbjct: 217 VDMRSQLDVVKKGVHIVVATPGRLKDILAKKKMSLDACRLLTLDEADRLVDLGFEDDIRH 276
Query: 396 IVGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAE 455
+ + RQTLLFSATMP K++ A L PV V VG G AN D+ Q V + +A
Sbjct: 277 VFDHFKSQRQTLLFSATMPAKIQIFATSALVKPVTVNVGRAGAANLDVIQEVEYVKQEA- 335
Query: 456 KLPWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQK 515
K+ +LLE L VL+F K VD+I L KG +A A+HG KDQ R +
Sbjct: 336 KIVYLLECLQKTTPP--VLIFCENKADVDDIHEYLLLKGVEAVAIHGGKDQEDRDYAISL 393
Query: 516 FKSGVYHVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLV 575
FK+G VL+ATDVA++GLD I+ V+N+D+ +++ +VHRIGRTGR G K G A T +
Sbjct: 394 FKAGKKDVLVATDVASKGLDFPDIQHVINYDMPGEIENYVHRIGRTGRCG-KTGIATTFI 452
Query: 576 TQKEARFAG-ELVNSLIAAGQNVSMELMDL 604
+ ++ +L + L A Q + L +L
Sbjct: 453 NKNQSEITLLDLKHLLQEAKQRIPPVLAEL 482
>SGD|S000005730 [details] [associations]
symbol:DED1 "ATP-dependent DEAD (Asp-Glu-Ala-Asp)-box RNA
helicase" species:4932 "Saccharomyces cerevisiae" [GO:0006413
"translational initiation" evidence=IEA;IMP] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA;IC]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=IMP;IDA]
[GO:0033592 "RNA strand annealing activity" evidence=IDA]
[GO:0003743 "translation initiation factor activity" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0006412 "translation" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 SGD:S000005730 GO:GO:0005524 GO:GO:0005737
EMBL:BK006948 GO:GO:0006413 GO:GO:0003743 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00620000087942
HOGENOM:HOG000268804 KO:K11594 OrthoDB:EOG4XPTQ4 OMA:GNWANAN
EMBL:X57278 EMBL:Z75110 EMBL:X03245 PIR:S13653 RefSeq:NP_014847.3
RefSeq:NP_014849.3 ProteinModelPortal:P06634 SMR:P06634
DIP:DIP-5820N IntAct:P06634 MINT:MINT-697363 STRING:P06634
PaxDb:P06634 PeptideAtlas:P06634 EnsemblFungi:YOR204W GeneID:854379
GeneID:854381 KEGG:sce:YOR204W KEGG:sce:YOR206W CYGD:YOR204w
KO:K14833 SABIO-RK:P06634 NextBio:976514 Genevestigator:P06634
GermOnline:YOR204W GO:GO:0033592 Uniprot:P06634
Length = 604
Score = 750 (269.1 bits), Expect = 2.9e-76, Sum P(2) = 2.9e-76
Identities = 171/417 (41%), Positives = 243/417 (58%)
Query: 211 LAIRVSGFDVPRPVKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAK 270
+ + SG DVP P+ F L+ I + KPT +Q ++PI+ +GRD++ A+
Sbjct: 128 IPVDASGKDVPEPITEFTSPPLDGLLLENIKLARFTKPTPVQKYSVPIVANGRDLMACAQ 187
Query: 271 TGSGKTAAFVLPMIVHIMD-----QPE-----LQKEEGPIGVICAPTRELAHQIYLETKK 320
TGSGKT F+ P++ QPE Q++ P VI APTRELA QI+ E KK
Sbjct: 188 TGSGKTGGFLFPVLSESFKTGPSPQPESQGSFYQRKAYPTAVIMAPTRELATQIFDEAKK 247
Query: 321 FAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDE 380
F ++ VYGG +Q +E++ GC++++ATPGRL D+L+ ++++ V YLVLDE
Sbjct: 248 FTYRSWVKACVVYGGSPIGNQLREIERGCDLLVATPGRLNDLLERGKISLANVKYLVLDE 307
Query: 381 ADRMFDLGFEPQIRSIVGQ--IRP--DRQTLLFSATMPRKVEKLAREILSDPVRVTVGEV 436
ADRM D+GFEPQIR IV + P +RQTL+FSAT P ++ LAR+ LSD + ++VG V
Sbjct: 308 ADRMLDMGFEPQIRHIVEDCDMTPVGERQTLMFSATFPADIQHLARDFLSDYIFLSVGRV 367
Query: 437 GMANEDITQVVHVIPSDAEKLPWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFK 496
G +E+ITQ V + + +K LL+ L D G L+F K D++ L + F+
Sbjct: 368 GSTSENITQKVLYVENQDKKSA-LLDLLSASTD-GLTLIFVETKRMADQLTDFLIMQNFR 425
Query: 497 AAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVH 556
A A+HGD+ Q+ R L F+SG +L+AT VAARGLDI ++ V+N+D+ D+D +VH
Sbjct: 426 ATAIHGDRTQSERERALAAFRSGAATLLVATAVAARGLDIPNVTHVINYDLPSDVDDYVH 485
Query: 557 RIGRTGRAGDKDGTAYTLVTQKEARFAGELVNSLIAAGQNVSMELMDLAMKDGRFRS 613
RIGRTGRAG+ G A + + L L A Q V L D M RS
Sbjct: 486 RIGRTGRAGNT-GLATAFFNSENSNIVKGLHEILTEANQEVPSFLKDAMMSAPGSRS 541
Score = 37 (18.1 bits), Expect = 2.9e-76, Sum P(2) = 2.9e-76
Identities = 7/15 (46%), Positives = 10/15 (66%)
Query: 35 SSRYSHDNYEDTDLD 49
SS + DNY+D +D
Sbjct: 117 SSGINFDNYDDIPVD 131
>UNIPROTKB|E2RRQ7 [details] [associations]
symbol:DDX3X "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 OMA:KYERGGN EMBL:AAEX03026295
Ensembl:ENSCAFT00000022643 Uniprot:E2RRQ7
Length = 706
Score = 745 (267.3 bits), Expect = 4.6e-76, Sum P(2) = 4.6e-76
Identities = 168/414 (40%), Positives = 247/414 (59%)
Query: 211 LAIRVSGFDVPRPVKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAK 270
+ + +G + P +++F D +M I Y +PT +Q A+PII RD++ A+
Sbjct: 208 IPVEATGNNCPPHIESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQ 267
Query: 271 TGSGKTAAFVLPMIVHIM-DQP----ELQKEEG--------PIGVICAPTRELAHQIYLE 317
TGSGKTAAF+LP++ I D P KE G PI ++ APTRELA QIY E
Sbjct: 268 TGSGKTAAFLLPILSQIYSDGPGEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEE 327
Query: 318 TKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLV 377
+KF+ +R VYGG Q ++L+ GC +++ATPGRL+DM++ + + YLV
Sbjct: 328 ARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLV 387
Query: 378 LDEADRMFDLGFEPQIRSIVGQ--IRPD--RQTLLFSATMPRKVEKLAREILSDPVRVTV 433
LDEADRM D+GFEPQIR IV Q + P R T++FSAT P++++ LAR+ L + + + V
Sbjct: 388 LDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAV 447
Query: 434 GEVGMANEDITQVVHVIPSDAEKLPWLLEKLPGMIDDGD--VLVFASKKTTVDEIESQLA 491
G VG +E+ITQ V V +++K +LL+ L D LVF K D +E L
Sbjct: 448 GRVGSTSENITQKV-VWVEESDKRSFLLDLLNATESGKDSLTLVFVETKKGADSLEDFLY 506
Query: 492 QKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVNFDIARDM 551
+G+ ++HGD+ Q R E L +F+SG +L+AT VAARGLDI ++K V+NFD+ D+
Sbjct: 507 HEGYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDI 566
Query: 552 DMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELVNSLIAAGQNVSMELMDLA 605
+ +VHRIGRTGR G+ G A + ++ +L++ L+ A Q V L ++A
Sbjct: 567 EEYVHRIGRTGRVGNL-GLATSFFNERNINITKDLLDLLVEAKQEVPSWLENMA 619
Score = 40 (19.1 bits), Expect = 4.6e-76, Sum P(2) = 4.6e-76
Identities = 13/44 (29%), Positives = 19/44 (43%)
Query: 695 SASAYANKRPALRGFVSGGSIGGDVNGTQTTGLTGFVSGGSIGG 738
S+S++++ R SGG G G G GF + GG
Sbjct: 653 SSSSFSSSRAGSSR--SGGGGHGSSRGFGGGGYGGFYNSDGYGG 694
>WB|WBGene00019245 [details] [associations]
symbol:sacy-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0040007 "growth" evidence=IMP]
[GO:0002119 "nematode larval development" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] [GO:0040010 "positive regulation of
growth rate" evidence=IMP] [GO:0002009 "morphogenesis of an
epithelium" evidence=IMP] [GO:0008340 "determination of adult
lifespan" evidence=IMP] [GO:0040035 "hermaphrodite genitalia
development" evidence=IMP] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR001878 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00343 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0008340 GO:GO:0009792 GO:GO:0002009 GO:GO:0005737
GO:GO:0040007 GO:GO:0040010 GO:GO:0002119 GO:GO:0008270
GO:GO:0003676 GO:GO:0040035 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00620000087942 HSSP:P10081 KO:K13116
OMA:KDQEERS HOGENOM:HOG000268792 EMBL:FO081567 RefSeq:NP_491962.1
ProteinModelPortal:Q9N5K1 SMR:Q9N5K1 PaxDb:Q9N5K1
EnsemblMetazoa:H27M09.1 GeneID:172413 KEGG:cel:CELE_H27M09.1
UCSC:H27M09.1 CTD:172413 WormBase:H27M09.1 InParanoid:Q9N5K1
NextBio:875413 Uniprot:Q9N5K1
Length = 630
Score = 764 (274.0 bits), Expect = 8.1e-76, P = 8.1e-76
Identities = 179/421 (42%), Positives = 249/421 (59%)
Query: 196 ISGMSEQDVMEYKKSLAIRVSGFDVPRPVKTFEDCGFSTQLMHAISKQ-GYEKPTSIQCQ 254
I S++D +K L I G +P P+ +F + F L+ + KQ G PT+IQ Q
Sbjct: 160 IRRQSQEDYEIQRKRLGISCEGDHIPPPIGSFLEMKFPKSLLEFMQKQKGIVTPTAIQIQ 219
Query: 255 ALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQP---ELQKEEGPIGVICAPTRELA 311
+P+ LSGRD+IGIA TGSGKT FVLP+++ ++Q + EGP G+I P+RELA
Sbjct: 220 GIPVALSGRDMIGIASTGSGKTMTFVLPLVMFCLEQEMKLPFMRSEGPFGLIIVPSRELA 279
Query: 312 HQIY-LETKKF-----AKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKM 365
QI+ L + F A +R GG+ +Q K+++ G IV+ATPGRL DML
Sbjct: 280 RQIFDLIIEMFDALGKAGLPEMRAGLCIGGVPIGEQAKDVRDGIHIVVATPGRLSDMLTK 339
Query: 366 KALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLAREIL 425
K + + YLVLDEADRM D+GFE +I+SI + RQTLLFSATMPRK++ A+ L
Sbjct: 340 KIINLEVCRYLVLDEADRMLDMGFEDEIKSIFYFFKAQRQTLLFSATMPRKIQFFAKSAL 399
Query: 426 SDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEKLPGMIDDGDVLVFASKKTTVDE 485
P+ V VG G A+ ++ Q + + S+ KL +LE L VL+FA KK VD
Sbjct: 400 VKPIVVNVGRAGAASLNVLQELEFVRSE-NKLVRVLECLQKT--SPKVLIFAEKKVDVDN 456
Query: 486 IESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVNF 545
I L KG + A++HG KDQ+ R ++ F+ VL+ATDVA++GLD + I+ V+NF
Sbjct: 457 IYEYLLVKGVEVASIHGGKDQSDRHAGIEAFRKNEKDVLVATDVASKGLDFQGIEHVINF 516
Query: 546 DIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQK-EARFAGELVNSLIAAGQNVSMELMDL 604
D+ D++ +VHRIGRTGR+G K G A T + +K E +L L AGQ + L L
Sbjct: 517 DMPEDIENYVHRIGRTGRSGRK-GLATTFINKKSEMSVLSDLKQLLAEAGQELPEFLKML 575
Query: 605 A 605
A
Sbjct: 576 A 576
>RGD|1559513 [details] [associations]
symbol:RGD1559513 "similar to DEAD (Asp-Glu-Ala-Asp) box
polypeptide 41" species:10116 "Rattus norvegicus" [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR001878 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00343
SMART:SM00490 RGD:1559513 GO:GO:0005524 GO:GO:0008270 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 OrthoDB:EOG4CVG6K OMA:MEETETI
IPI:IPI00958592 Ensembl:ENSRNOT00000033492 UCSC:RGD:1559513
NextBio:667517 Uniprot:D4ADJ9
Length = 621
Score = 763 (273.6 bits), Expect = 1.0e-75, P = 1.0e-75
Identities = 174/439 (39%), Positives = 253/439 (57%)
Query: 180 IDYEPFNKDFYQDSASISGMSEQDVMEYKKSLAIRVSGFDVPRPVKTFEDCGFSTQLMHA 239
I Y+ K + + MSE+ +K I V G +P P+K+F++ ++
Sbjct: 135 ITYDDPIKTSWTPPRYVLSMSEERHERVRKKYHILVEGDGIPPPIKSFKEMKLPAAILRG 194
Query: 240 ISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPE---LQKE 296
+ K+G PT IQ Q +P ILSGRD+IGIA TGSGKT F LP+I+ ++Q + K
Sbjct: 195 LKKKGILHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVIMFCLEQEKRLPFSKR 254
Query: 297 EGPIGVICAPTRELAHQI------YLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCE 350
EGP G+I P+RELA Q Y + S + + GG+S +Q + ++ G
Sbjct: 255 EGPYGLIICPSRELARQTHGILEYYCRLLQEDSSPLLHCALCIGGVSLKEQMETMRHGVH 314
Query: 351 IVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFS 410
I++ATPGRL+D+L+ K +++ YL LDEADRM D+GFE IR+I + RQTLLFS
Sbjct: 315 IMVATPGRLMDLLQKKMVSLDICRYLALDEADRMIDMGFEGDIRTIFSYFKGQRQTLLFS 374
Query: 411 ATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEKLPGMIDD 470
ATMP+K++ A+ L PV + VG G A+ D+ Q V + +A K+ +LLE L
Sbjct: 375 ATMPKKIQNFAKSALVKPVTINVGRAGAASLDVIQEVEYVKEEA-KMVYLLECLQKT--P 431
Query: 471 GDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVA 530
VL+FA KK VD I L KG +A A+HG KDQ R + ++ F+ G VL+ATDVA
Sbjct: 432 PPVLIFAKKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFREGKKDVLVATDVA 491
Query: 531 ARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQK-EARFAGELVNS 589
++GLD +I+ V+N+D+ +++ +VHRIGRTGR+G+ G A T + + + +L
Sbjct: 492 SKGLDFPAIQHVINYDMPEEIENYVHRIGRTGRSGNT-GIATTFINKACDESVLMDLKAL 550
Query: 590 LIAAGQNVSMELMDLAMKD 608
L+ A Q V L L D
Sbjct: 551 LLEAKQKVPPVLQVLHCGD 569
>ASPGD|ASPL0000077157 [details] [associations]
symbol:AN10557 species:162425 "Emericella nidulans"
[GO:0071470 "cellular response to osmotic stress" evidence=IEA]
[GO:0007346 "regulation of mitotic cell cycle" evidence=IEA]
[GO:0031137 "regulation of conjugation with cellular fusion"
evidence=IEA] [GO:0002183 "cytoplasmic translational initiation"
evidence=IEA] [GO:0031047 "gene silencing by RNA" evidence=IEA]
[GO:0010628 "positive regulation of gene expression" evidence=IEA]
[GO:0097308 "cellular response to farnesol" evidence=IEP]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IEA] [GO:0033592 "RNA strand annealing activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
GO:GO:0003743 EMBL:BN001303 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
OMA:GNWANAN EMBL:AACD01000077 ProteinModelPortal:C8V8H4 SMR:C8V8H4
PRIDE:C8V8H4 EnsemblFungi:CADANIAT00005985 Uniprot:C8V8H4
Length = 668
Score = 760 (272.6 bits), Expect = 2.1e-75, P = 2.1e-75
Identities = 168/415 (40%), Positives = 246/415 (59%)
Query: 211 LAIRVSGFDVPRPVKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAK 270
+ + SG DVP PV TF + L+ I+ Y+ PT +Q ++PI+++GRD++ A+
Sbjct: 172 IPVEASGHDVPEPVNTFTNPPLDDHLISNIALARYQTPTPVQKYSIPIVMNGRDLMACAQ 231
Query: 271 TGSGKTAAFVLPMIVHIMDQ------PEL------QKEEGPIGVICAPTRELAHQIYLET 318
TGSGKT F+ P++ P Q++ P +I APTREL QI+ E
Sbjct: 232 TGSGKTGGFLFPILSQAYQNGPAAPPPSAAGQFGRQRKAYPTSLILAPTRELVSQIFDEA 291
Query: 319 KKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVL 378
+KFA +R VYGG Q ++++ GC++++ATPGRL+D+++ +++ + YL+L
Sbjct: 292 RKFAYRSWVRPCVVYGGADIGSQLRQIERGCDLLVATPGRLVDLIERGRISLVNIKYLIL 351
Query: 379 DEADRMFDLGFEPQIRSIV-GQIRP---DRQTLLFSATMPRKVEKLAREILSDPVRVTVG 434
DEADRM D+GFEPQIR IV G+ P DRQTL+FSAT PR ++ LAR+ L D V ++VG
Sbjct: 352 DEADRMLDMGFEPQIRRIVEGEDMPNVNDRQTLMFSATFPRDIQMLARDFLKDYVFLSVG 411
Query: 435 EVGMANEDITQVVHVIPSDAEKLPWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKG 494
VG +E+ITQ V + D +K LL+ L G L+F K D + L +
Sbjct: 412 RVGSTSENITQKVEYV-EDHDKRSVLLDILHTHGTTGLTLIFVETKRMADALSEFLINQR 470
Query: 495 FKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVNFDIARDMDMH 554
F A A+HGD+ Q R L+ F+SG Y +L+AT VAARGLDI ++ V+N+D+ D+D +
Sbjct: 471 FPATAIHGDRTQRERERALEMFRSGRYPILVATAVAARGLDIPNVTHVINYDLPTDIDDY 530
Query: 555 VHRIGRTGRAGDKDGTAYTLVTQKEARFAGELVNSLIAAGQNVSMELMDLAMKDG 609
VHRIGRTGRAG+ G A + +L++ L A Q V L +A ++G
Sbjct: 531 VHRIGRTGRAGNT-GIATAFFNRGNRGVVRDLIDLLKEAHQEVPSFLESIA-REG 583
>CGD|CAL0004832 [details] [associations]
symbol:orf19.7392 species:5476 "Candida albicans" [GO:0005829
"cytosol" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=IEA] [GO:0033592 "RNA strand annealing activity"
evidence=IEA] [GO:0006413 "translational initiation" evidence=IEA]
[GO:0071470 "cellular response to osmotic stress" evidence=IEA]
[GO:0031137 "regulation of conjugation with cellular fusion"
evidence=IEA] [GO:2000765 "regulation of cytoplasmic translation"
evidence=IEA] [GO:0031047 "gene silencing by RNA" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 CGD:CAL0004832 GO:GO:0005524 GO:GO:0005737
GO:GO:0003743 EMBL:AACQ01000066 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K11594 RefSeq:XP_716633.1
ProteinModelPortal:Q5A4E2 SMR:Q5A4E2 PRIDE:Q5A4E2 GeneID:3641752
KEGG:cal:CaO19.7392 Uniprot:Q5A4E2
Length = 672
Score = 735 (263.8 bits), Expect = 2.5e-75, Sum P(2) = 2.5e-75
Identities = 167/415 (40%), Positives = 241/415 (58%)
Query: 211 LAIRVSGFDVPRPVKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAK 270
+ + SG VP P+ +F L+ I + KPT +Q ++PI+ +GRD++ A+
Sbjct: 172 IPVEASGDKVPEPITSFTAPPLDELLVENIQLSRFTKPTPVQKYSVPIVAAGRDLMACAQ 231
Query: 271 TGSGKTAAFVLPMIVH-IMDQPE-LQKEEG--------PIGVICAPTRELAHQIYLETKK 320
TGSGKT F+ P++ M P + + G P ++ APTREL QIY E+KK
Sbjct: 232 TGSGKTGGFLFPVLSESYMKGPAPVPESNGAFSSHKVYPTILVMAPTRELVSQIYEESKK 291
Query: 321 FAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDE 380
F+ +R VYGG Q + + GC++++ATPGRL D+L ++++ + YLVLDE
Sbjct: 292 FSYRSWVRACVVYGGADIGQQMRNMDRGCDLLVATPGRLKDLLDRGKVSLANIRYLVLDE 351
Query: 381 ADRMFDLGFEPQIRSIVGQI-RP---DRQTLLFSATMPRKVEKLAREILSDPVRVTVGEV 436
ADRM D+GFEPQIR IV + P DRQTL+FSAT PR ++ LAR+ L D V ++VG V
Sbjct: 352 ADRMLDMGFEPQIRYIVEECDMPAVKDRQTLMFSATFPRDIQMLARDFLKDYVFLSVGRV 411
Query: 437 GMANEDITQVVHVIPSDAEKLPWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFK 496
G +E+ITQ + + D EK +L+ L ++G +VF K D + L +GF
Sbjct: 412 GSTSENITQKILYVEDD-EKKSVILDLLSAN-ENGLTIVFTETKRMADNLADYLYDQGFP 469
Query: 497 AAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVH 556
A A+HGD+ Q R + L FK+G +L+AT VAARGLDI ++ V+N+D+ D+D +VH
Sbjct: 470 ATAIHGDRSQYEREKALAAFKNGAAPILVATAVAARGLDIPNVSHVINYDLPSDIDDYVH 529
Query: 557 RIGRTGRAGDKDGTAYTLVTQKEARFAGELVNSLIAAGQNVSMELMDLAMKDGRF 611
RIGRTGRAG+ G A + L+ L A Q V L +A ++G F
Sbjct: 530 RIGRTGRAGNV-GIATAFFNRNNKNVVKGLIELLSEANQEVPDFLTKIA-REGAF 582
Score = 43 (20.2 bits), Expect = 2.5e-75, Sum P(2) = 2.5e-75
Identities = 15/59 (25%), Positives = 23/59 (38%)
Query: 707 RGFVSGGSIGGDVNGTQTTGLTGFVSGGSIGGEMSGTQTTXXXXXXXXXXXXRVN--YG 763
RG GGS G + +G +G+ + G+ G SG ++ N YG
Sbjct: 587 RGGGRGGSSRGPSRDFRRSGNSGWGNSGNSGWGNSGNASSSGWGGNSSSSYSNTNSNYG 645
Score = 39 (18.8 bits), Expect = 6.7e-75, Sum P(2) = 6.7e-75
Identities = 12/43 (27%), Positives = 17/43 (39%)
Query: 701 NKRPALRGFVSGGSIGGDVNGTQTTGLTGFVSGGSIGGEMSGT 743
+ R R F G+ G +G G +G S GG S +
Sbjct: 594 SSRGPSRDFRRSGNSGWGNSGNSGWGNSGNASSSGWGGNSSSS 636
>UNIPROTKB|D6RDK4 [details] [associations]
symbol:DDX4 "Probable ATP-dependent RNA helicase DDX4"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 CTD:54514 KO:K13982 RefSeq:NP_001160005.1
UniGene:Hs.223581 GeneID:54514 KEGG:hsa:54514 HGNC:HGNC:18700
GenomeRNAi:54514 NextBio:56900 EMBL:AC016632 IPI:IPI00953956
ProteinModelPortal:D6RDK4 SMR:D6RDK4 PRIDE:D6RDK4
Ensembl:ENST00000514278 UCSC:uc010ivz.3 ArrayExpress:D6RDK4
Bgee:D6RDK4 Uniprot:D6RDK4
Length = 704
Score = 727 (261.0 bits), Expect = 5.2e-75, Sum P(2) = 5.2e-75
Identities = 163/408 (39%), Positives = 245/408 (60%)
Query: 210 SLAIRVSGFDVPRPVKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIA 269
++ + VSG D P + TFE+ L + I+K GY K T +Q ++PIIL+GRD++ A
Sbjct: 253 TILVEVSGHDAPPAILTFEEANLCQTLNNNIAKAGYTKLTPVQKYSIPIILAGRDLMACA 312
Query: 270 KTGSGKTAAFVLPMIVHIMDQ----PELQKEEGPIGVICAPTRELAHQIYLETKKFAKSH 325
+TGSGKTAAF+LP++ H+M ++ + P +I APTREL +QIYLE +KF+
Sbjct: 313 QTGSGKTAAFLLPILAHMMHDGITASRFKELQEPECIIVAPTRELVNQIYLEARKFSFGT 372
Query: 326 GIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMF 385
+R +YGG +++ GC I+ ATPGRL+D++ + + + ++ YLVLDEADRM
Sbjct: 373 CVRAVVIYGGTQLGHSIRQIVQGCNILCATPGRLMDIIGKEKIGLKQIKYLVLDEADRML 432
Query: 386 DLGFEPQIRSIVG----QIRPDRQTLLFSATMPRKVEKLAREIL-SDPVRVTVGEVGMAN 440
D+GF P+++ ++ + RQTL+FSAT P ++++LA E L S+ + V VG+VG A
Sbjct: 433 DMGFGPEMKKLISCPGMPSKEQRQTLMFSATFPEEIQRLAAEFLKSNYLFVAVGQVGGAC 492
Query: 441 EDITQVVHVIP--SDAEKLPWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAA 498
D+ Q V + S EKL +L I D +VF K D I + L Q+
Sbjct: 493 RDVQQTVLQVGQFSKREKLVEILRN----IGDERTMVFVETKKKADFIATFLCQEKISTT 548
Query: 499 ALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRI 558
++HGD++Q R + L F+ G VL+AT VAARGLDI++++ V+NFD+ +D +VHRI
Sbjct: 549 SIHGDREQREREQALGDFRFGKCPVLVATSVAARGLDIENVQHVINFDLPSTIDEYVHRI 608
Query: 559 GRTGRAGDKDGTAYTLVT-QKEARFAGELVNSLIAAGQNVSMELMDLA 605
GRTGR G+ G A + + + A LV L A Q+V L ++A
Sbjct: 609 GRTGRCGNT-GRAISFFDLESDNHLAQPLVKVLTDAQQDVPAWLEEIA 655
Score = 48 (22.0 bits), Expect = 5.2e-75, Sum P(2) = 5.2e-75
Identities = 17/64 (26%), Positives = 23/64 (35%)
Query: 4 RKFGFEGFNINRQTSYSFEQSQAPQRL-YVPPSSRYSHDNYEDTDLDNIDYEDNDAAKAA 62
R G G N NR + S E P R + S S N+ + D + DN +
Sbjct: 25 RYSGENGDNFNRTPASSSEMDDGPSRRDHFMKSGFASGRNFGNRDAGECNKRDNTSTMGG 84
Query: 63 NDTG 66
G
Sbjct: 85 FGVG 88
>UNIPROTKB|Q9NQI0 [details] [associations]
symbol:DDX4 "Probable ATP-dependent RNA helicase DDX4"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0007275
"multicellular organismal development" evidence=IEA] [GO:0000237
"leptotene" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0007141 "male meiosis I" evidence=IEA] [GO:0007283
"spermatogenesis" evidence=IEA] [GO:0032880 "regulation of protein
localization" evidence=IEA] [GO:0033391 "chromatoid body"
evidence=IEA] [GO:0048471 "perinuclear region of cytoplasm"
evidence=IEA] [GO:0030317 "sperm motility" evidence=IMP]
[GO:0071546 "pi-body" evidence=ISS] [GO:0071547 "piP-body"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0007275 GO:GO:0005524 GO:GO:0005634
GO:GO:0048471 GO:GO:0032880 GO:GO:0007283 GO:GO:0003676
GO:GO:0030317 EMBL:CH471123 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0071546 GO:GO:0033391 GO:GO:0007141
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268804 HOVERGEN:HBG015893 CTD:54514 KO:K13982
OrthoDB:EOG4W6NVF GO:GO:0071547 EMBL:AY004154 EMBL:AF262962
EMBL:AK292417 EMBL:BC047455 EMBL:BC088362 EMBL:AL137462
IPI:IPI00071483 IPI:IPI00456933 PIR:T46407 RefSeq:NP_001136021.1
RefSeq:NP_001160005.1 RefSeq:NP_077726.1 UniGene:Hs.223581
ProteinModelPortal:Q9NQI0 SMR:Q9NQI0 IntAct:Q9NQI0 STRING:Q9NQI0
PhosphoSite:Q9NQI0 DMDM:20138033 REPRODUCTION-2DPAGE:IPI00456933
PaxDb:Q9NQI0 PRIDE:Q9NQI0 Ensembl:ENST00000353507
Ensembl:ENST00000354991 Ensembl:ENST00000505374 GeneID:54514
KEGG:hsa:54514 UCSC:uc003jqg.4 UCSC:uc003jqh.4
GeneCards:GC05P055069 HGNC:HGNC:18700 HPA:CAB026170 HPA:HPA037763
HPA:HPA037764 MIM:605281 neXtProt:NX_Q9NQI0 PharmGKB:PA38646
InParanoid:Q9NQI0 OMA:RDAGESN PhylomeDB:Q9NQI0 GenomeRNAi:54514
NextBio:56900 ArrayExpress:Q9NQI0 Bgee:Q9NQI0 CleanEx:HS_DDX4
Genevestigator:Q9NQI0 GermOnline:ENSG00000152670 GO:GO:0000237
Uniprot:Q9NQI0
Length = 724
Score = 727 (261.0 bits), Expect = 5.2e-75, Sum P(2) = 5.2e-75
Identities = 163/408 (39%), Positives = 245/408 (60%)
Query: 210 SLAIRVSGFDVPRPVKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIA 269
++ + VSG D P + TFE+ L + I+K GY K T +Q ++PIIL+GRD++ A
Sbjct: 273 TILVEVSGHDAPPAILTFEEANLCQTLNNNIAKAGYTKLTPVQKYSIPIILAGRDLMACA 332
Query: 270 KTGSGKTAAFVLPMIVHIMDQ----PELQKEEGPIGVICAPTRELAHQIYLETKKFAKSH 325
+TGSGKTAAF+LP++ H+M ++ + P +I APTREL +QIYLE +KF+
Sbjct: 333 QTGSGKTAAFLLPILAHMMHDGITASRFKELQEPECIIVAPTRELVNQIYLEARKFSFGT 392
Query: 326 GIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMF 385
+R +YGG +++ GC I+ ATPGRL+D++ + + + ++ YLVLDEADRM
Sbjct: 393 CVRAVVIYGGTQLGHSIRQIVQGCNILCATPGRLMDIIGKEKIGLKQIKYLVLDEADRML 452
Query: 386 DLGFEPQIRSIVG----QIRPDRQTLLFSATMPRKVEKLAREIL-SDPVRVTVGEVGMAN 440
D+GF P+++ ++ + RQTL+FSAT P ++++LA E L S+ + V VG+VG A
Sbjct: 453 DMGFGPEMKKLISCPGMPSKEQRQTLMFSATFPEEIQRLAAEFLKSNYLFVAVGQVGGAC 512
Query: 441 EDITQVVHVIP--SDAEKLPWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAA 498
D+ Q V + S EKL +L I D +VF K D I + L Q+
Sbjct: 513 RDVQQTVLQVGQFSKREKLVEILRN----IGDERTMVFVETKKKADFIATFLCQEKISTT 568
Query: 499 ALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRI 558
++HGD++Q R + L F+ G VL+AT VAARGLDI++++ V+NFD+ +D +VHRI
Sbjct: 569 SIHGDREQREREQALGDFRFGKCPVLVATSVAARGLDIENVQHVINFDLPSTIDEYVHRI 628
Query: 559 GRTGRAGDKDGTAYTLVT-QKEARFAGELVNSLIAAGQNVSMELMDLA 605
GRTGR G+ G A + + + A LV L A Q+V L ++A
Sbjct: 629 GRTGRCGNT-GRAISFFDLESDNHLAQPLVKVLTDAQQDVPAWLEEIA 675
Score = 48 (22.0 bits), Expect = 5.2e-75, Sum P(2) = 5.2e-75
Identities = 17/64 (26%), Positives = 23/64 (35%)
Query: 4 RKFGFEGFNINRQTSYSFEQSQAPQRL-YVPPSSRYSHDNYEDTDLDNIDYEDNDAAKAA 62
R G G N NR + S E P R + S S N+ + D + DN +
Sbjct: 25 RYSGENGDNFNRTPASSSEMDDGPSRRDHFMKSGFASGRNFGNRDAGECNKRDNTSTMGG 84
Query: 63 NDTG 66
G
Sbjct: 85 FGVG 88
>UNIPROTKB|F1NIX1 [details] [associations]
symbol:DDX3X "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 OMA:KYERGGN EMBL:AADN02011031
IPI:IPI00822944 Ensembl:ENSGALT00000026172 ArrayExpress:F1NIX1
Uniprot:F1NIX1
Length = 638
Score = 756 (271.2 bits), Expect = 5.7e-75, P = 5.7e-75
Identities = 172/426 (40%), Positives = 250/426 (58%)
Query: 197 SGMSEQDVMEYKKSLAIRVSGFDVPRPVKTFEDCGFSTQLMHAISKQGYEKPTSIQCQAL 256
SG + E + + +G + P +++F D +M I Y +PT +Q A+
Sbjct: 130 SGSNTGINFEKYDDIPVEATGSNCPPHIESFSDVDMGEIIMGNIELTRYTRPTPVQKHAI 189
Query: 257 PIILSGRDIIGIAKTGSGKTAAFVLPMIVHIM-DQP----ELQKEEG--------PIGVI 303
PII RD++ A+TGSGKTAAF+LP++ I D P KE G PI ++
Sbjct: 190 PIIKEKRDLMACAQTGSGKTAAFLLPILSQIYADGPGDALRAMKENGRYGRRKQYPISLV 249
Query: 304 CAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDML 363
APTRELA QIY E +KFA +R VYGG Q ++L+ GC +++ATPGRL+DM+
Sbjct: 250 LAPTRELAVQIYEEARKFAYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMM 309
Query: 364 KMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQ--IRPD--RQTLLFSATMPRKVEK 419
+ + + YLVLDEADRM D+GFEPQIR IV Q + P R T++FSAT P++++
Sbjct: 310 ERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQM 369
Query: 420 LAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEKLPGMIDDGDVLVFASK 479
LAR+ L + + + VG VG +E+ITQ V V + +K +LL+ L D LVF
Sbjct: 370 LARDFLDEYIFLAVGRVGSTSENITQKV-VWVEELDKRSFLLDLLNATGKDSLTLVFVET 428
Query: 480 KTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSI 539
K D +E L +G+ ++HGD+ Q R E L +F+SG +L+AT VAARGLDI ++
Sbjct: 429 KKGADALEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNV 488
Query: 540 KSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELVNSLIAAGQNVSM 599
K V+NFD+ D++ +VHRIGRTGR G+ G A + ++ +L++ L+ A Q V
Sbjct: 489 KHVINFDLPSDIEEYVHRIGRTGRVGNL-GLATSFFNERNINITKDLLDLLVEAKQEVPS 547
Query: 600 ELMDLA 605
L ++A
Sbjct: 548 WLENMA 553
>UNIPROTKB|Q4R5S7 [details] [associations]
symbol:DDX4 "Probable ATP-dependent RNA helicase DDX4"
species:9541 "Macaca fascicularis" [GO:0005737 "cytoplasm"
evidence=ISS] [GO:0071546 "pi-body" evidence=ISS] [GO:0071547
"piP-body" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0007275 GO:GO:0005524
GO:GO:0048471 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0071546 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HOVERGEN:HBG015893 GO:GO:0071547 EMBL:AB169466
ProteinModelPortal:Q4R5S7 SMR:Q4R5S7 Uniprot:Q4R5S7
Length = 725
Score = 728 (261.3 bits), Expect = 6.7e-75, Sum P(2) = 6.7e-75
Identities = 165/408 (40%), Positives = 245/408 (60%)
Query: 210 SLAIRVSGFDVPRPVKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIA 269
++ + VSG D P + TFE+ L + I+K GY K T +Q ++PIIL+GRD++ A
Sbjct: 274 TILVEVSGHDAPPAILTFEEANLCQTLNNNIAKAGYTKLTPVQKYSIPIILAGRDLMACA 333
Query: 270 KTGSGKTAAFVLPMIVHIMDQ---PELQKE-EGPIGVICAPTRELAHQIYLETKKFAKSH 325
+TGSGKTAAF+LP++ H+M KE + P +I APTREL +QIYLE +KF+
Sbjct: 334 QTGSGKTAAFLLPILAHMMHDGITASCFKELQEPECIIVAPTRELVNQIYLEARKFSFGT 393
Query: 326 GIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMF 385
+R +YGG +++ GC I+ ATPGRL+D++ + + + ++ YLVLDEADRM
Sbjct: 394 CVRAVVIYGGTQLGHSIRQIVQGCNILCATPGRLMDIIGKEKIGLKQIKYLVLDEADRML 453
Query: 386 DLGFEPQIRSIVG----QIRPDRQTLLFSATMPRKVEKLAREIL-SDPVRVTVGEVGMAN 440
D+GF P+++ ++ + RQTL+FSAT P ++++LA E L S+ + V VG+VG A
Sbjct: 454 DMGFGPEMKKLISCPGMPSKEQRQTLMFSATFPEEIQRLAAEFLKSNYLFVAVGQVGGAC 513
Query: 441 EDITQVVHVIP--SDAEKLPWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAA 498
D+ Q V + S EKL +L I D +VF K D I + L Q+
Sbjct: 514 RDVQQTVLQVGQFSKREKLVEILRN----IGDERTMVFVETKKKADFIATFLCQEKISTT 569
Query: 499 ALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRI 558
++HGD++Q R + L F+ G VL+AT VAARGLDI++++ V+NFD+ +D +VHRI
Sbjct: 570 SIHGDREQREREQALGDFRCGKCPVLVATSVAARGLDIENVQHVINFDLPSTIDEYVHRI 629
Query: 559 GRTGRAGDKDGTAYTLVT-QKEARFAGELVNSLIAAGQNVSMELMDLA 605
GRTGR G+ G A + + + A LV L A Q+V L ++A
Sbjct: 630 GRTGRCGNT-GRAISFFDLESDNHLAQPLVKVLTDAQQDVPAWLEEIA 676
Score = 46 (21.3 bits), Expect = 6.7e-75, Sum P(2) = 6.7e-75
Identities = 16/61 (26%), Positives = 22/61 (36%)
Query: 7 GFEGFNINRQTSYSFEQSQAPQRL-YVPPSSRYSHDNYEDTDLDNIDYEDNDAAKAANDT 65
G G N NR + S E P R + S S N+ + D + DN +
Sbjct: 29 GENGDNFNRTPTSSSEMDDGPSRRDHFMKSGFASGRNFGNRDAGESNKRDNTSTMGGFGV 88
Query: 66 G 66
G
Sbjct: 89 G 89
>MGI|MGI:1349406 [details] [associations]
symbol:Ddx3y "DEAD (Asp-Glu-Ala-Asp) box polypeptide 3,
Y-linked" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 MGI:MGI:1349406 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00620000087942
HOGENOM:HOG000268804 KO:K11594 HOVERGEN:HBG015893 OrthoDB:EOG47D9FV
CTD:8653 EMBL:AJ007376 EMBL:BC021453 EMBL:L25337 IPI:IPI00134371
RefSeq:NP_036138.1 UniGene:Mm.486436 ProteinModelPortal:Q62095
SMR:Q62095 STRING:Q62095 PhosphoSite:Q62095 PaxDb:Q62095
PRIDE:Q62095 Ensembl:ENSMUST00000091190 GeneID:26900 KEGG:mmu:26900
InParanoid:Q62095 NextBio:304749 Bgee:Q62095 Genevestigator:Q62095
GermOnline:ENSMUSG00000069045 Uniprot:Q62095
Length = 658
Score = 754 (270.5 bits), Expect = 9.3e-75, P = 9.3e-75
Identities = 168/412 (40%), Positives = 247/412 (59%)
Query: 211 LAIRVSGFDVPRPVKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAK 270
+ + +G + P ++ F D +M I Y +PT +Q A+PII RD++ A+
Sbjct: 165 IPVEATGNNCPPHIENFSDIEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQ 224
Query: 271 TGSGKTAAFVLPMIVHIM-DQP----ELQKEEG--------PIGVICAPTRELAHQIYLE 317
TGSGKTAAF+LP++ I D P + KE G PI ++ APTRELA QIY E
Sbjct: 225 TGSGKTAAFLLPILSQIYTDGPGEALKAMKENGRYGRRKQYPISLVLAPTRELAVQIYEE 284
Query: 318 TKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLV 377
+KF+ +R VYGG + Q ++L+ GC +++ATPGRL+DM++ + + YLV
Sbjct: 285 ARKFSYRSRVRPCVVYGGADTVQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLV 344
Query: 378 LDEADRMFDLGFEPQIRSIVGQ--IRPD--RQTLLFSATMPRKVEKLAREILSDPVRVTV 433
LDEADRM D+GFEPQIR IV Q + P R T++FSAT P++++ LAR+ L + + + V
Sbjct: 345 LDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAV 404
Query: 434 GEVGMANEDITQVVHVIPSDAEKLPWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQK 493
G VG +E+ITQ V V + +K +LL+ L D LVF K D +E+ L Q+
Sbjct: 405 GRVGSTSENITQKV-VWVEELDKRSFLLDLLNATGKDSLTLVFVETKKGADSLENFLFQE 463
Query: 494 GFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVNFDIARDMDM 553
+ ++HGD+ Q R E L +F+SG +L+AT VAARGLDI ++K V+NFD+ D++
Sbjct: 464 RYACTSIHGDRSQKDREEALHQFRSGRKPILVATAVAARGLDISNVKHVINFDLPSDIEE 523
Query: 554 HVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELVNSLIAAGQNVSMELMDLA 605
+VHRIGRTGR G+ G A + ++ +L++ L+ A Q V L +A
Sbjct: 524 YVHRIGRTGRVGNL-GLATSFFNERNLNITKDLLDLLVEAKQEVPSWLESMA 574
>UNIPROTKB|G5E631 [details] [associations]
symbol:DDX3X "Uncharacterized protein" species:9913 "Bos
taurus" [GO:2001243 "negative regulation of intrinsic apoptotic
signaling pathway" evidence=IEA] [GO:1900087 "positive regulation
of G1/S transition of mitotic cell cycle" evidence=IEA] [GO:0097193
"intrinsic apoptotic signaling pathway" evidence=IEA] [GO:0071470
"cellular response to osmotic stress" evidence=IEA] [GO:0071243
"cellular response to arsenic-containing substance" evidence=IEA]
[GO:0048027 "mRNA 5'-UTR binding" evidence=IEA] [GO:0045948
"positive regulation of translational initiation" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0045087 "innate immune
response" evidence=IEA] [GO:0043280 "positive regulation of
cysteine-type endopeptidase activity involved in apoptotic process"
evidence=IEA] [GO:0043154 "negative regulation of cysteine-type
endopeptidase activity involved in apoptotic process" evidence=IEA]
[GO:0043066 "negative regulation of apoptotic process"
evidence=IEA] [GO:0043065 "positive regulation of apoptotic
process" evidence=IEA] [GO:0043024 "ribosomal small subunit
binding" evidence=IEA] [GO:0042256 "mature ribosome assembly"
evidence=IEA] [GO:0035613 "RNA stem-loop binding" evidence=IEA]
[GO:0034063 "stress granule assembly" evidence=IEA] [GO:0031333
"negative regulation of protein complex assembly" evidence=IEA]
[GO:0030308 "negative regulation of cell growth" evidence=IEA]
[GO:0030307 "positive regulation of cell growth" evidence=IEA]
[GO:0022627 "cytosolic small ribosomal subunit" evidence=IEA]
[GO:0017148 "negative regulation of translation" evidence=IEA]
[GO:0010501 "RNA secondary structure unwinding" evidence=IEA]
[GO:0010494 "cytoplasmic stress granule" evidence=IEA] [GO:0009615
"response to virus" evidence=IEA] [GO:0008625 "extrinsic apoptotic
signaling pathway via death domain receptors" evidence=IEA]
[GO:0008190 "eukaryotic initiation factor 4E binding" evidence=IEA]
[GO:0008143 "poly(A) RNA binding" evidence=IEA] [GO:0008134
"transcription factor binding" evidence=IEA] [GO:0007243
"intracellular protein kinase cascade" evidence=IEA] [GO:0007059
"chromosome segregation" evidence=IEA] [GO:0005852 "eukaryotic
translation initiation factor 3 complex" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00620000087942 KO:K11594 CTD:1654
OMA:KYERGGN EMBL:DAAA02073612 RefSeq:NP_001179891.1 UniGene:Bt.9783
PRIDE:G5E631 Ensembl:ENSBTAT00000050399 GeneID:510093
KEGG:bta:510093 NextBio:20869274 Uniprot:G5E631
Length = 661
Score = 753 (270.1 bits), Expect = 1.2e-74, P = 1.2e-74
Identities = 168/412 (40%), Positives = 247/412 (59%)
Query: 211 LAIRVSGFDVPRPVKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAK 270
+ + +G + P +++F D +M I Y +PT +Q A+PII RD++ A+
Sbjct: 165 IPVEATGNNCPPHIESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQ 224
Query: 271 TGSGKTAAFVLPMIVHIM-DQP----ELQKEEG--------PIGVICAPTRELAHQIYLE 317
TGSGKTAAF+LP++ I D P KE G PI ++ APTRELA QIY E
Sbjct: 225 TGSGKTAAFLLPILSQIYSDGPGEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEE 284
Query: 318 TKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLV 377
+KF+ +R VYGG Q ++L+ GC +++ATPGRL+DM++ + + YLV
Sbjct: 285 ARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLV 344
Query: 378 LDEADRMFDLGFEPQIRSIVGQ--IRPD--RQTLLFSATMPRKVEKLAREILSDPVRVTV 433
LDEADRM D+GFEPQIR IV Q + P R T++FSAT P++++ LAR+ L + + + V
Sbjct: 345 LDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAV 404
Query: 434 GEVGMANEDITQVVHVIPSDAEKLPWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQK 493
G VG +E+ITQ V V +++K +LL+ L D LVF K D +E L +
Sbjct: 405 GRVGSTSENITQKV-VWVEESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHE 463
Query: 494 GFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVNFDIARDMDM 553
G+ ++HGD+ Q R E L +F+SG +L+AT VAARGLDI ++K V+NFD+ D++
Sbjct: 464 GYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEE 523
Query: 554 HVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELVNSLIAAGQNVSMELMDLA 605
+VHRIGRTGR G+ G A + ++ +L++ L+ A Q V L ++A
Sbjct: 524 YVHRIGRTGRVGNL-GLATSFFNERNINITKDLLDLLVEAKQEVPSWLENMA 574
>GENEDB_PFALCIPARUM|PFL1310c [details] [associations]
symbol:PFL1310c "ATP-dependent RNA helicase,
putative" species:5833 "Plasmodium falciparum" [GO:0016070 "RNA
metabolic process" evidence=ISS] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
EMBL:AE014188 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083
HOGENOM:HOG000268804 KO:K12823 RefSeq:XP_001350668.1
ProteinModelPortal:Q8I5E7 PRIDE:Q8I5E7
EnsemblProtists:PFL1310c:mRNA GeneID:811314 KEGG:pfa:PFL1310c
EuPathDB:PlasmoDB:PF3D7_1227100 ProtClustDB:CLSZ2500975
Uniprot:Q8I5E7
Length = 742
Score = 575 (207.5 bits), Expect = 1.6e-74, Sum P(3) = 1.6e-74
Identities = 124/311 (39%), Positives = 190/311 (61%)
Query: 301 GVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLI 360
G+I PTREL Q+ E K F K+ I+ AVYGG+ K Q LK G +I++ATPGRL+
Sbjct: 430 GLILLPTRELCLQVLDEIKSFEKNLPIKSVAVYGGVPKYYQINNLKKGADIIVATPGRLL 489
Query: 361 DMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKL 420
D L+ + + + Y+V+DEADR+ D+GFE Q+R I+ Q+ ++Q L +AT P +V KL
Sbjct: 490 DFLENGNINLLKCIYVVIDEADRLLDMGFEKQLRKIMTQVNKNKQLLFLTATWPEQVRKL 549
Query: 421 AREILS-DPVRVTVGEVGM-ANEDITQVVHVIPSDAEKLPWLLEKLPGMIDDGDVLVFAS 478
A + S DPV++ +G+ + AN++I Q V +I S + LL+ L ++ +L+F
Sbjct: 550 AYDFCSYDPVKIQIGKNELTANKNIEQNV-IISSSIDMKKKLLDWLKENYENNKILIFCD 608
Query: 479 KKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKS 538
K D + +L + A ++HGDK Q R IL +K+ ++L+ATDVA+RGLDIK+
Sbjct: 609 TKRNCDNLCKELRYHQYNALSIHGDKQQRERDRILNNYKTDRCNILVATDVASRGLDIKN 668
Query: 539 IKSVVNFDIARDMDMHVHRIGRTGRAGDKDGT----AYTLVTQKEARFAGELVNSLIAAG 594
I V+N+DI ++ ++HRIGRTGRAG K + +Y ++ +FA EL+ L
Sbjct: 669 ISVVINYDIPNTIEDYIHRIGRTGRAGKKGKSILFFSYDYYMPQKLKFAKELIKLLNKTN 728
Query: 595 QNVSMELMDLA 605
Q V +L ++A
Sbjct: 729 QTVPPQLKEIA 739
Score = 168 (64.2 bits), Expect = 1.6e-74, Sum P(3) = 1.6e-74
Identities = 37/97 (38%), Positives = 61/97 (62%)
Query: 199 MSEQDVM-EYKKS-LAIRVSGFDVPRPVKTFEDCGFSTQLMHAISKQGYEKPTSIQCQAL 256
+S++D+ E KK+ + I G + + F D F +++ ++ + + +PT+IQ
Sbjct: 261 LSKEDIQNELKKNNIYINKDGI-IHNIINKFSDVCFHESILNYLNNK-FSEPTAIQKITW 318
Query: 257 PIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPEL 293
PI LSG+D+IG+A+TGSGKT AFVLP +HI+ E+
Sbjct: 319 PIALSGKDLIGVAETGSGKTLAFVLPCFMHILKHKEI 355
Score = 40 (19.1 bits), Expect = 1.6e-74, Sum P(3) = 1.6e-74
Identities = 11/27 (40%), Positives = 14/27 (51%)
Query: 32 VPPSSRYSHDNYEDTDLDN-ID-YEDN 56
VP DN D D+DN +D + DN
Sbjct: 89 VPDDMDNDMDNNVDNDMDNNVDNHVDN 115
>UNIPROTKB|Q3MSQ8 [details] [associations]
symbol:ddx4 "Probable ATP-dependent RNA helicase DDX4"
species:45623 "Pelophylax lessonae" [GO:0071546 "pi-body"
evidence=ISS] [GO:0071547 "piP-body" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0007275 GO:GO:0005524 GO:GO:0005634
GO:GO:0030154 GO:GO:0048477 GO:GO:0007283 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0071546
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 HSSP:P09052
HOVERGEN:HBG015893 GO:GO:0071547 EMBL:AJ841700
ProteinModelPortal:Q3MSQ8 SMR:Q3MSQ8 Uniprot:Q3MSQ8
Length = 724
Score = 749 (268.7 bits), Expect = 3.1e-74, P = 3.1e-74
Identities = 168/407 (41%), Positives = 247/407 (60%)
Query: 211 LAIRVSGFDVPRPVKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAK 270
+ + VSG DVP + TFE+ L + K GY K T IQ ++PII++GRD++ A+
Sbjct: 272 IVVEVSGSDVPPAILTFEEANLCDSLAKNVCKSGYVKLTPIQKHSIPIIVAGRDLMACAQ 331
Query: 271 TGSGKTAAFVLPMIVHIM----DQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHG 326
TGSGKTAAF+LP++ H+M + Q + P +I APTREL +QIYL+ +KF+
Sbjct: 332 TGSGKTAAFLLPILAHLMVKGVESSAFQTLKEPEAIIVAPTRELINQIYLDARKFSYGTC 391
Query: 327 IRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFD 386
+R +YGG K++ GC I+ ATPGRL+D+++ + + ++++ YLVLDEADRM D
Sbjct: 392 VRPVVIYGGTQMFHSLKQISEGCNILCATPGRLLDVIRKEKIGLTKLRYLVLDEADRMLD 451
Query: 387 LGFEPQIRSIV---GQ-IRPDRQTLLFSATMPRKVEKLAREILS-DPVRVTVGEVGMANE 441
+GF I +++ G + +RQTL+FSAT P ++ LAREIL D + V VG+VG A
Sbjct: 452 MGFREDIENLLKSSGMPSKEERQTLMFSATFPSSIQSLAREILKPDYLFVVVGQVGGACS 511
Query: 442 DITQVVHVIPSDAEKLPWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALH 501
D+ Q+V + +K L+E L I +VF K D I + L Q+ + ++H
Sbjct: 512 DVEQMVIEVDEFGKK-DKLMEILQE-IGSERTMVFVKTKKKADFIATFLCQEKVPSTSIH 569
Query: 502 GDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRT 561
GD++Q R L+ F++G V++AT VAARGLDI+++ V+NFDI D+D +VHRIGRT
Sbjct: 570 GDREQKERETALRDFRTGQCPVIVATSVAARGLDIENVSYVINFDIPDDIDEYVHRIGRT 629
Query: 562 GRAGDKDGTAYTLVTQK---EARFAGELVNSLIAAGQNVSMELMDLA 605
GR G+ G A + ++ E R A LV L A Q V L ++A
Sbjct: 630 GRCGNT-GRAISFFDKRGDDEQRIARSLVKVLSDAHQEVPAWLEEVA 675
>WB|WBGene00002244 [details] [associations]
symbol:laf-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0040007 "growth" evidence=IMP]
[GO:0002119 "nematode larval development" evidence=IMP] [GO:0042006
"masculinization of hermaphroditic germ-line" evidence=IMP]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0043186 "P granule"
evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0009792
GO:GO:0040007 GO:GO:0002119 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043186
HOGENOM:HOG000268804 KO:K11594 GO:GO:0042006 EMBL:FO081822
EMBL:FJ348231 RefSeq:NP_001254859.1 UniGene:Cel.25045
ProteinModelPortal:D0PV95 SMR:D0PV95 GeneID:190611
KEGG:cel:CELE_Y71H2AM.19 CTD:190611 WormBase:Y71H2AM.19b
ArrayExpress:D0PV95 Uniprot:D0PV95
Length = 708
Score = 718 (257.8 bits), Expect = 3.7e-74, Sum P(2) = 3.7e-74
Identities = 165/436 (37%), Positives = 257/436 (58%)
Query: 193 SASISGMSEQDVMEYKKSLAIRVSGFDVPRPVKTFEDCGFSTQLMHAISKQGYEKPTSIQ 252
S +SG++ +Y++ + + +G DVP+P+ F D + I GY++PT +Q
Sbjct: 203 SGQLSGINFD---KYEE-IPVEATGDDVPQPISLFSDLSLHEWIEENIKTAGYDRPTPVQ 258
Query: 253 CQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIM-DQPEL----------QKEEGPIG 301
++P + GRD++ A+TGSGKTAAF++P++ I+ D P+ +K++ P
Sbjct: 259 KYSIPALQGGRDLMSCAQTGSGKTAAFLVPLVNAILQDGPDAVHRSVTSSGGRKKQYPSA 318
Query: 302 VICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKL-DQFKELKAGCEIVIATPGRLI 360
++ +PTREL+ QI+ E++KFA I + +YGG DQ +L+ GC I+IATPGRLI
Sbjct: 319 LVLSPTRELSLQIFNESRKFAYRTPITSALLYGGRENYKDQIHKLRLGCHILIATPGRLI 378
Query: 361 DMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIR-PDRQ---TLLFSATMPRK 416
D++ + M YLVLDEADRM D+GFEPQIR IV R P ++ T +FSAT P++
Sbjct: 379 DVMDQGLIGMEGCRYLVLDEADRMLDMGFEPQIRQIVECNRMPSKEERITAMFSATFPKE 438
Query: 417 VEKLAREILSDP-VRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEKLPGMIDDGDVLV 475
++ LA++ L + V + VG VG +E+I Q + + D EK +L++ L D LV
Sbjct: 439 IQLLAQDFLKENYVFLAVGRVGSTSENIMQKIVWVEED-EKRSYLMDLLDATGDSSLTLV 497
Query: 476 FASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLD 535
F K ++ L ++ ++ +HGD Q R + L F++G +L+AT VAARGLD
Sbjct: 498 FVETKRGASDLAYYLNRQNYEVVTIHGDLKQFEREKHLDLFRTGTAPILVATAVAARGLD 557
Query: 536 IKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELVNSLIAAGQ 595
I ++K V+N+D+ D+D +VHRIGRTGR G+ G A + K A EL++ ++ A Q
Sbjct: 558 IPNVKHVINYDLPSDVDEYVHRIGRTGRVGNV-GLATSFFNDKNRNIARELMDLIVEANQ 616
Query: 596 NVS--MELMDLAMKDG 609
+ +E M M+ G
Sbjct: 617 ELPDWLEGMSGDMRSG 632
Score = 49 (22.3 bits), Expect = 3.7e-74, Sum P(2) = 3.7e-74
Identities = 14/33 (42%), Positives = 16/33 (48%)
Query: 712 GGSIGGDVNGTQTTGLTGFVSGGSIGGEMSGTQ 744
GG GG G ++ G GF SGG GG Q
Sbjct: 668 GGGFGG--GGQRSGGGGGFQSGGG-GGRQQQQQ 697
>UNIPROTKB|F1NIX2 [details] [associations]
symbol:DDX3X "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 EMBL:AADN02011031 IPI:IPI00579247
Ensembl:ENSGALT00000026171 ArrayExpress:F1NIX2 Uniprot:F1NIX2
Length = 636
Score = 745 (267.3 bits), Expect = 8.4e-74, P = 8.4e-74
Identities = 170/427 (39%), Positives = 252/427 (59%)
Query: 197 SGMSEQDVMEYKKSLAIRVSGFDVPRPVKTFEDCGFSTQLMHAISKQGYEKPTSIQCQAL 256
SG + E + + +G + P +++F D +M I Y +PT +Q A+
Sbjct: 128 SGSNTGINFEKYDDIPVEATGSNCPPHIESFSDVDMGEIIMGNIELTRYTRPTPVQKHAI 187
Query: 257 PIILSGRDIIGIAKTGSGKTAAFVLPMIVHIM-DQP--ELQ-----------KEEGPIGV 302
PII RD++ A+TGSGKTAAF+LP++ I D P L+ +++ PI +
Sbjct: 188 PIIKEKRDLMACAQTGSGKTAAFLLPILSQIYADGPGDALRAMKATNGRYGRRKQYPISL 247
Query: 303 ICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDM 362
+ APTRELA QIY E +KFA +R VYGG Q ++L+ GC +++ATPGRL+DM
Sbjct: 248 VLAPTRELAVQIYEEARKFAYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDM 307
Query: 363 LKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQ--IRPD--RQTLLFSATMPRKVE 418
++ + + YLVLDEADRM D+GFEPQIR IV Q + P R T++FSAT P++++
Sbjct: 308 MERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQ 367
Query: 419 KLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEKLPGMIDDGDVLVFAS 478
LAR+ L + + + VG VG +E+ITQ V V + +K +LL+ L D LVF
Sbjct: 368 MLARDFLDEYIFLAVGRVGSTSENITQKV-VWVEELDKRSFLLDLLNATGKDSLTLVFVE 426
Query: 479 KKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKS 538
K D +E L +G+ ++HGD+ Q R E L +F+SG +L+AT VAARGLDI +
Sbjct: 427 TKKGADALEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISN 486
Query: 539 IKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELVNSLIAAGQNVS 598
+K V+NFD+ D++ +VHRIGRTGR G+ G A + ++ +L++ L+ A Q V
Sbjct: 487 VKHVINFDLPSDIEEYVHRIGRTGRVGNL-GLATSFFNERNINITKDLLDLLVEAKQEVP 545
Query: 599 MELMDLA 605
L ++A
Sbjct: 546 SWLENMA 552
>RGD|2314437 [details] [associations]
symbol:Ddx3y "DEAD (Asp-Glu-Ala-Asp) box polypeptide 3 Y-linked"
species:10116 "Rattus norvegicus" [GO:0005737 "cytoplasm"
evidence=ISO] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 RGD:2314437 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 KO:K11594 CTD:8653
EMBL:FJ775727 IPI:IPI00196210 RefSeq:NP_001161137.1
UniGene:Rn.95841 ProteinModelPortal:C9WPN2 PRIDE:C9WPN2
GeneID:100312982 KEGG:rno:100312982 UCSC:RGD:2314437 Uniprot:C9WPN2
Length = 652
Score = 745 (267.3 bits), Expect = 8.4e-74, P = 8.4e-74
Identities = 167/412 (40%), Positives = 246/412 (59%)
Query: 211 LAIRVSGFDVPRPVKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAK 270
+ + +G + P ++ F D +M I Y +PT +Q A+PII RD++ A+
Sbjct: 159 IPVEATGNNCPPHIENFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQ 218
Query: 271 TGSGKTAAFVLPMIVHIM-DQP----ELQKEEG--------PIGVICAPTRELAHQIYLE 317
TGSG TAAF+LP++ I D P + KE G PI ++ APTRELA QIY E
Sbjct: 219 TGSGCTAAFLLPILSQIYTDGPGEALKAMKENGRYGRRKQYPISLVLAPTRELAVQIYEE 278
Query: 318 TKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLV 377
+KF+ +R VYGG + Q ++L+ GC +++ATPGRL+DM++ + + YLV
Sbjct: 279 ARKFSYRSRVRPCVVYGGADTVQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLV 338
Query: 378 LDEADRMFDLGFEPQIRSIVGQ--IRPD--RQTLLFSATMPRKVEKLAREILSDPVRVTV 433
LDEADRM D+GFEPQIR IV Q + P R T++FSAT P++++ LAR+ L + + + V
Sbjct: 339 LDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAV 398
Query: 434 GEVGMANEDITQVVHVIPSDAEKLPWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQK 493
G VG +E+ITQ V V + +K +LL+ L D LVF K D +E+ L Q+
Sbjct: 399 GRVGSTSENITQKV-VWVEELDKRSFLLDLLNATGRDSLTLVFVETKKGADSLENFLFQE 457
Query: 494 GFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVNFDIARDMDM 553
+ ++HGD+ Q R E L +F+SG +L+AT VAARGLDI ++K V+NFD+ D++
Sbjct: 458 RYACTSIHGDRSQKDREEALHQFRSGRKPILVATAVAARGLDISNVKHVINFDLPSDIEE 517
Query: 554 HVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELVNSLIAAGQNVSMELMDLA 605
+VHRIGRTGR G+ G A + ++ +L++ L+ A Q V L +A
Sbjct: 518 YVHRIGRTGRVGNL-GLATSFFNERNLNITKDLLDLLVEAKQEVPSWLESMA 568
>UNIPROTKB|E2RMU5 [details] [associations]
symbol:DDX4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0048471 "perinuclear region of cytoplasm"
evidence=IEA] [GO:0033391 "chromatoid body" evidence=IEA]
[GO:0032880 "regulation of protein localization" evidence=IEA]
[GO:0030317 "sperm motility" evidence=IEA] [GO:0007283
"spermatogenesis" evidence=IEA] [GO:0007141 "male meiosis I"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0000237
"leptotene" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0048471 GO:GO:0032880 GO:GO:0007283
GO:GO:0003676 GO:GO:0030317 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0033391 GO:GO:0007141 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00620000087942
OMA:RDAGESN GO:GO:0000237 EMBL:AAEX03001439
Ensembl:ENSCAFT00000011062 Uniprot:E2RMU5
Length = 728
Score = 722 (259.2 bits), Expect = 9.7e-74, Sum P(2) = 9.7e-74
Identities = 163/408 (39%), Positives = 245/408 (60%)
Query: 210 SLAIRVSGFDVPRPVKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIA 269
++ + VSG D P + TFE+ L + I+K GY K T +Q ++PIIL+GRD++ A
Sbjct: 274 TILVEVSGHDAPPAILTFEEANLCQTLNNNIAKAGYTKLTPVQKYSIPIILAGRDLMACA 333
Query: 270 KTGSGKTAAFVLPMIVHIMDQ----PELQKEEGPIGVICAPTRELAHQIYLETKKFAKSH 325
+TGSGKTAAF+LP++ H+M ++ + P +I APTREL +QIYLE +KF+
Sbjct: 334 QTGSGKTAAFLLPILAHMMHDGITASRFKELQEPECIIVAPTRELINQIYLEARKFSFGT 393
Query: 326 GIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMF 385
+R +YGG +++ GC I+ ATPGRL+D++ + + + +V YLVLDEADRM
Sbjct: 394 CVRAVVIYGGTQLGYSIRQIVQGCNILCATPGRLMDIIGKEKIGLRQVKYLVLDEADRML 453
Query: 386 DLGFEPQIRSIVG----QIRPDRQTLLFSATMPRKVEKLAREIL-SDPVRVTVGEVGMAN 440
D+GF P+++ ++ + RQTL+FSAT P ++++LA E L S+ + V VG+VG A
Sbjct: 454 DMGFGPEMKKLISCPGMPSKEQRQTLMFSATFPEEIQRLAGEFLKSNYLFVAVGQVGGAC 513
Query: 441 EDITQVVHVIP--SDAEKLPWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAA 498
D+ Q + + S EKL +L I D +VF K D I + L Q+
Sbjct: 514 RDVQQTILQVGQYSKREKLVEILRS----IGDERTMVFVETKKKADFIATFLCQEKISTT 569
Query: 499 ALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRI 558
++HGD++Q R + L F+ G VL+AT VAARGLDI++++ V+NFD+ +D +VHRI
Sbjct: 570 SIHGDREQREREQALGDFRCGKCPVLVATSVAARGLDIENVQHVINFDLPSTIDEYVHRI 629
Query: 559 GRTGRAGDKDGTAYTLVT-QKEARFAGELVNSLIAAGQNVSMELMDLA 605
GRTGR G+ G A + + + A LV L A Q+V L ++A
Sbjct: 630 GRTGRCGNT-GRAISFFDPESDNHLAQPLVKVLSDAQQDVPAWLEEIA 676
Score = 41 (19.5 bits), Expect = 9.7e-74, Sum P(2) = 9.7e-74
Identities = 9/23 (39%), Positives = 11/23 (47%)
Query: 7 GFEGFNINRQTSYSFEQSQAPQR 29
G G NR T+ S E + P R
Sbjct: 30 GANGDTFNRTTASSSEMNDGPSR 52
>POMBASE|SPCC1795.11 [details] [associations]
symbol:sum3 "translation initiation RNA helicase Sum3"
species:4896 "Schizosaccharomyces pombe" [GO:0002183 "cytoplasmic
translational initiation" evidence=IMP] [GO:0003743 "translation
initiation factor activity" evidence=IEA] [GO:0004004
"ATP-dependent RNA helicase activity" evidence=TAS] [GO:0005515
"protein binding" evidence=IPI] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005829 "cytosol" evidence=IDA] [GO:0007346
"regulation of mitotic cell cycle" evidence=IMP] [GO:0010628
"positive regulation of gene expression" evidence=IMP] [GO:0031047
"gene silencing by RNA" evidence=IDA] [GO:0031137 "regulation of
conjugation with cellular fusion" evidence=IGI] [GO:0071470
"cellular response to osmotic stress" evidence=IMP]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 PomBase:SPCC1795.11 GO:GO:0005829 GO:GO:0005524
GO:GO:0007346 GO:GO:0051301 GO:GO:0007067 EMBL:CU329672
GenomeReviews:CU329672_GR GO:GO:0071470 GO:GO:0010628 GO:GO:0031047
GO:GO:0003743 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 GO:GO:0031137 InterPro:IPR014014 PROSITE:PS51195
GO:GO:0002183 HOGENOM:HOG000268804 KO:K11594 OrthoDB:EOG4XPTQ4
OMA:KYERGGN EMBL:AF025536 EMBL:AF084222 EMBL:AB012389 EMBL:AJ237697
EMBL:AB027871 PIR:T43543 RefSeq:NP_588033.1
ProteinModelPortal:O13370 SMR:O13370 IntAct:O13370
MINT:MINT-4666622 STRING:O13370 PRIDE:O13370
EnsemblFungi:SPCC1795.11.1 GeneID:2538689 KEGG:spo:SPCC1795.11
NextBio:20799875 Uniprot:O13370
Length = 636
Score = 744 (267.0 bits), Expect = 1.1e-73, P = 1.1e-73
Identities = 168/413 (40%), Positives = 247/413 (59%)
Query: 211 LAIRVSGFDVPRPVKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAK 270
+ + VSG D+ PV F ++ L+ I GY +PT +Q ++PI+ SGRD++ A+
Sbjct: 156 IPVEVSGGDI-EPVNEFTSPPLNSHLLQNIKLSGYTQPTPVQKNSIPIVTSGRDLMACAQ 214
Query: 271 TGSGKTAAFVLPMIVHIMDQ-PE---LQKEEG---------PIGVICAPTRELAHQIYLE 317
TGSGKTA F+ P++ D+ P + ++ G P +I APTREL QI+ E
Sbjct: 215 TGSGKTAGFLFPILSLAFDKGPAAVPVDQDAGMGYRPRKAYPTTLILAPTRELVCQIHEE 274
Query: 318 TKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLV 377
++KF +R AVYGG Q +++ GC+++ ATPGRL+D++ ++++ + +LV
Sbjct: 275 SRKFCYRSWVRPCAVYGGADIRAQIRQIDQGCDLLSATPGRLVDLIDRGRISLANIKFLV 334
Query: 378 LDEADRMFDLGFEPQIRSIV-GQIRP---DRQTLLFSATMPRKVEKLAREILSDPVRVTV 433
LDEADRM D+GFEPQIR IV G +RQTL+FSAT PR ++ LAR+ L D V ++V
Sbjct: 335 LDEADRMLDMGFEPQIRHIVEGADMTSVEERQTLMFSATFPRDIQLLARDFLKDYVFLSV 394
Query: 434 GEVGMANEDITQ-VVHVIPSDAEKLPWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQ 492
G VG +E+ITQ VVHV D+EK +LL+ L + +G L+F K D + L
Sbjct: 395 GRVGSTSENITQKVVHV--EDSEKRSYLLDILHTLPPEGLTLIFVETKRMADTLTDYLLN 452
Query: 493 KGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVNFDIARDMD 552
F A ++HGD+ Q R L+ F+SG +++AT VA+RGLDI ++ V+N+D+ D+D
Sbjct: 453 SNFPATSIHGDRTQRERERALELFRSGRTSIMVATAVASRGLDIPNVTHVINYDLPTDID 512
Query: 553 MHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELVNSLIAAGQNVSMELMDLA 605
+VHRIGRTGRAG+ G A + A EL+ L A Q L+ +A
Sbjct: 513 DYVHRIGRTGRAGNT-GQAVAFFNRNNKGIAKELIELLQEANQECPSFLIAMA 564
>MGI|MGI:102670 [details] [associations]
symbol:Ddx4 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 4"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=ISO;IDA] [GO:0007141 "male meiosis I" evidence=IMP]
[GO:0007275 "multicellular organismal development" evidence=IEA]
[GO:0007283 "spermatogenesis" evidence=IMP] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0030317 "sperm motility"
evidence=ISO] [GO:0030529 "ribonucleoprotein complex" evidence=IDA]
[GO:0032880 "regulation of protein localization" evidence=IMP]
[GO:0033391 "chromatoid body" evidence=ISO;IDA] [GO:0044464 "cell
part" evidence=IDA] [GO:0048471 "perinuclear region of cytoplasm"
evidence=IDA] [GO:0071546 "pi-body" evidence=IDA] [GO:0071547
"piP-body" evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 MGI:MGI:102670 GO:GO:0007275
GO:GO:0005524 GO:GO:0005634 GO:GO:0048471 GO:GO:0032880
GO:GO:0007283 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0071546 GO:GO:0033391 GO:GO:0007141
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 HOGENOM:HOG000268804
HOVERGEN:HBG015893 CTD:54514 KO:K13982 GO:GO:0071547 GO:GO:0000237
EMBL:AK014844 EMBL:D14859 IPI:IPI00121394 RefSeq:NP_034159.1
UniGene:Mm.12818 ProteinModelPortal:Q61496 SMR:Q61496 STRING:Q61496
PhosphoSite:Q61496 REPRODUCTION-2DPAGE:IPI00121394
REPRODUCTION-2DPAGE:Q61496 PaxDb:Q61496 PRIDE:Q61496
Ensembl:ENSMUST00000075748 GeneID:13206 KEGG:mmu:13206
UCSC:uc007rwm.2 ChiTaRS:DDX4 NextBio:283368 Bgee:Q61496
CleanEx:MM_DDX4 Genevestigator:Q61496 GermOnline:ENSMUSG00000021758
Uniprot:Q61496
Length = 702
Score = 723 (259.6 bits), Expect = 1.6e-73, Sum P(2) = 1.6e-73
Identities = 163/408 (39%), Positives = 244/408 (59%)
Query: 210 SLAIRVSGFDVPRPVKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIA 269
++ + VSG D P + TFE+ L + I+K GY K T +Q ++PI+L+GRD++ A
Sbjct: 246 TILVEVSGHDAPPAILTFEEANLCQTLNNNIAKAGYTKLTPVQKYSIPIVLAGRDLMACA 305
Query: 270 KTGSGKTAAFVLPMIVHIMDQ----PELQKEEGPIGVICAPTRELAHQIYLETKKFAKSH 325
+TGSGKTAAF+LP++ H+M ++ + P +I APTREL +QIYLE +KF+
Sbjct: 306 QTGSGKTAAFLLPILAHMMRDGITASRFKELQEPECIIVAPTRELINQIYLEARKFSFGT 365
Query: 326 GIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMF 385
+R +YGG +++ GC I+ ATPGRL+D++ + + + +V YLVLDEADRM
Sbjct: 366 CVRAVVIYGGTQFGHSVRQIVQGCNILCATPGRLMDIIGKEKIGLKQVKYLVLDEADRML 425
Query: 386 DLGFEPQIRSIVG----QIRPDRQTLLFSATMPRKVEKLAREIL-SDPVRVTVGEVGMAN 440
D+GF P+++ ++ + RQTLLFSAT P ++++LA + L S + V VG+VG A
Sbjct: 426 DMGFGPEMKKLISCPGMPSKEQRQTLLFSATFPEEIQRLAGDFLKSSYLFVAVGQVGGAC 485
Query: 441 EDITQVVHVIP--SDAEKLPWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAA 498
D+ Q + + S EKL +L I D +VF K D I + L Q+
Sbjct: 486 RDVQQTILQVGQYSKREKLVEILRN----IGDERTMVFVETKKKADFIATFLCQEKISTT 541
Query: 499 ALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRI 558
++HGD++Q R + L F+ G VL+AT VAARGLDI++++ V+NFD+ +D +VHRI
Sbjct: 542 SIHGDREQREREQALGDFRCGKCPVLVATSVAARGLDIENVQHVINFDLPSTIDEYVHRI 601
Query: 559 GRTGRAGDKDGTAYTLV-TQKEARFAGELVNSLIAAGQNVSMELMDLA 605
GRTGR G+ G A + T + A LV L A Q+V L ++A
Sbjct: 602 GRTGRCGNT-GRAISFFDTDSDNHLAQPLVKVLSDAQQDVPAWLEEIA 648
Score = 38 (18.4 bits), Expect = 1.6e-73, Sum P(2) = 1.6e-73
Identities = 7/19 (36%), Positives = 10/19 (52%)
Query: 24 SQAPQRLYVPPSSRYSHDN 42
SQ P+ Y+PP D+
Sbjct: 212 SQGPKVTYIPPPPPEDEDS 230
>UNIPROTKB|Q6GWX0 [details] [associations]
symbol:DDX4 "Probable ATP-dependent RNA helicase DDX4"
species:9823 "Sus scrofa" [GO:0033391 "chromatoid body"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=ISS] [GO:0071547
"piP-body" evidence=ISS] [GO:0071546 "pi-body" evidence=ISS]
[GO:0048471 "perinuclear region of cytoplasm" evidence=IEA]
[GO:0007275 "multicellular organismal development" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0007275 GO:GO:0005524
GO:GO:0048471 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0071546 GO:GO:0033391 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOVERGEN:HBG015893 CTD:54514 KO:K13982 OrthoDB:EOG4W6NVF
GO:GO:0071547 EMBL:AY626785 RefSeq:NP_001001910.1 UniGene:Ssc.42782
ProteinModelPortal:Q6GWX0 SMR:Q6GWX0 STRING:Q6GWX0 GeneID:431672
KEGG:ssc:431672 Uniprot:Q6GWX0
Length = 722
Score = 722 (259.2 bits), Expect = 2.0e-73, Sum P(2) = 2.0e-73
Identities = 162/406 (39%), Positives = 243/406 (59%)
Query: 210 SLAIRVSGFDVPRPVKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIA 269
++ + VSG D P + TFE+ L + I+K GY K T +Q ++PIIL+GRD++ A
Sbjct: 271 TILVEVSGHDAPPAILTFEEANLCQTLNNNIAKAGYTKLTPVQKYSIPIILAGRDLMACA 330
Query: 270 KTGSGKTAAFVLPMIVHIMDQ----PELQKEEGPIGVICAPTRELAHQIYLETKKFAKSH 325
+TGSGKTAAF+LP++ H+M ++ + P +I APTREL +QIYLE +KF+
Sbjct: 331 QTGSGKTAAFLLPILAHMMHDGITASRFKELQEPECIIVAPTRELVNQIYLEARKFSFGT 390
Query: 326 GIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMF 385
+R +YGG +++ GC I+ ATPGRL+D++ + + + ++ YLVLDEADRM
Sbjct: 391 CVRAVVIYGGTQLGHSIRQIVQGCNILCATPGRLMDIIGKEKIGLKQIKYLVLDEADRML 450
Query: 386 DLGFEPQIRSIVG----QIRPDRQTLLFSATMPRKVEKLAREIL-SDPVRVTVGEVGMAN 440
D+GF P+++ ++ + RQTL+FSAT P ++++LA E L S+ + V VG+VG A
Sbjct: 451 DMGFGPEMKKLISCPGMPSKEQRQTLMFSATFPEEIQRLAAEFLKSNYLFVAVGQVGGAC 510
Query: 441 EDITQVVHVIPSDAEKLPWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAAL 500
D+ Q + K LLE L I D +VF K D I + L Q+ ++
Sbjct: 511 RDVQQADLQV-GQYSKREKLLEILRN-IGDERTMVFVETKKKADFIATFLCQEKISTTSI 568
Query: 501 HGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGR 560
HGD++Q R + L F+ G VL+AT VAARGLDI++++ V+NFD+ +D +VHRIGR
Sbjct: 569 HGDREQREREQALGDFRFGKCPVLVATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGR 628
Query: 561 TGRAGDKDGTAYTLVT-QKEARFAGELVNSLIAAGQNVSMELMDLA 605
TGR G+ G A + + + A LV L A Q+V L ++A
Sbjct: 629 TGRCGNT-GRAISFFDLESDNHLAQPLVKVLTDAQQDVPAWLEEIA 673
Score = 38 (18.4 bits), Expect = 2.0e-73, Sum P(2) = 2.0e-73
Identities = 7/8 (87%), Positives = 8/8 (100%)
Query: 61 AANDTGNG 68
AA+DTGNG
Sbjct: 188 AASDTGNG 195
Score = 38 (18.4 bits), Expect = 2.0e-73, Sum P(2) = 2.0e-73
Identities = 17/66 (25%), Positives = 24/66 (36%)
Query: 5 KFGFEGFN---INRQTSYSFEQSQAPQ-RLYVPPSSRYSHDNYEDTDLDNIDYEDNDAAK 60
K G+ G N NR T+ S E P R + S S +Y D + +N +
Sbjct: 23 KDGYSGENGDKFNRTTASSSEMDDGPSGRDHFMKSGFTSGRSYGKRDAGESNKRENTSTT 82
Query: 61 AANDTG 66
G
Sbjct: 83 GGFGVG 88
>UNIPROTKB|Q91372 [details] [associations]
symbol:ddx4 "Probable ATP-dependent RNA helicase DDX4"
species:8355 "Xenopus laevis" [GO:0003674 "molecular_function"
evidence=ND] [GO:0005634 "nucleus" evidence=IDA] [GO:0005635
"nuclear envelope" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0007281 "germ cell development" evidence=IMP]
[GO:0045495 "pole plasm" evidence=IDA] [GO:0071546 "pi-body"
evidence=ISS] [GO:0071547 "piP-body" evidence=ISS] [GO:0032019
"mitochondrial cloud" evidence=IDA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0007275
GO:GO:0005524 GO:GO:0005635 GO:GO:0048477 GO:GO:0007283
GO:GO:0003676 GO:GO:0007281 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0071546 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HSSP:P09052 HOVERGEN:HBG015893 CTD:54514 KO:K13982
GO:GO:0071547 EMBL:AF046043 PIR:I51235 RefSeq:NP_001081728.1
UniGene:Xl.256 ProteinModelPortal:Q91372 SMR:Q91372 GeneID:398019
KEGG:xla:398019 Xenbase:XB-GENE-1016814 Uniprot:Q91372
Length = 700
Score = 717 (257.5 bits), Expect = 4.1e-73, Sum P(2) = 4.1e-73
Identities = 157/405 (38%), Positives = 247/405 (60%)
Query: 211 LAIRVSGFDVPRPVKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAK 270
+ + V+G DVP + TFE+ L +++ GY K T +Q ++PII++GRD++ A+
Sbjct: 260 ILVDVTGKDVPPAILTFEEANLCETLRRNVARAGYVKLTPVQKHSIPIIMAGRDLMACAQ 319
Query: 271 TGSGKTAAFVLPMIVHIMDQ-----PELQKEEGPIGVICAPTRELAHQIYLETKKFAKSH 325
TGSGKTAAF+LP++ ++M++ LQ +E P +I APTREL +QIYL+ +KF+
Sbjct: 320 TGSGKTAAFLLPILSYMMNEGITASQYLQLQE-PEAIIIAPTRELINQIYLDARKFSYGT 378
Query: 326 GIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMF 385
+R VYGG+ + ++++ GC I+ ATPGRL+D++ + + +S++ YLVLDEADRM
Sbjct: 379 CVRPVVVYGGIQPVHAMRDVEKGCNILCATPGRLLDIVSKEKIGLSKLRYLVLDEADRML 438
Query: 386 DLGFEPQIRSIVGQ----IRPDRQTLLFSATMPRKVEKLAREIL-SDPVRVTVGEVGMAN 440
D+GF P+I ++ + + RQTL+FSAT P ++ +LA L S+ + V VG VG A
Sbjct: 439 DMGFAPEIEKLMTKPGMPTKEKRQTLMFSATYPEEIRRLASNYLKSEHLFVVVGLVGGAC 498
Query: 441 EDITQVVHVIPSDAEKLPWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAAL 500
D+ Q V + + K+ LLE L + ++F + K D I L Q+ F + ++
Sbjct: 499 SDVAQTVLEMRENG-KMEKLLEILKSS-EKERTMIFVNTKKKADFIAGYLCQEKFSSTSI 556
Query: 501 HGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGR 560
HGD++Q R L F++G V++ T VAARGLDI++++ V+N+D+ +++D +VHRIGR
Sbjct: 557 HGDREQYQRESALWDFRTGKCTVIVCTAVAARGLDIENVQHVINYDVPKEVDEYVHRIGR 616
Query: 561 TGRAGDKDGTAYTLVTQKEARFAGELVNSLIAAGQNVSMELMDLA 605
TGR G+ Q + A LV L A Q V L ++A
Sbjct: 617 TGRCGNTGKATSFFNVQDDHVIARPLVKILTDAHQEVPAWLEEIA 661
Score = 40 (19.1 bits), Expect = 4.1e-73, Sum P(2) = 4.1e-73
Identities = 10/22 (45%), Positives = 13/22 (59%)
Query: 2 TKRKFGFEGFNINRQTSYSFEQ 23
T+R G GF NR +YS E+
Sbjct: 72 TERGRG-RGFGTNRNDNYSSER 92
>DICTYBASE|DDB_G0281925 [details] [associations]
symbol:DDB_G0281925 "DEAD/DEAH box helicase"
species:44689 "Dictyostelium discoideum" [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0044351 "macropinocytosis" evidence=RCA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 dictyBase:DDB_G0281925 GO:GO:0005524 GO:GO:0003676
EMBL:AAFI02000043 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 RefSeq:XP_640502.1
ProteinModelPortal:Q54T87 PRIDE:Q54T87 EnsemblProtists:DDB0304645
GeneID:8623317 KEGG:ddi:DDB_G0281925 InParanoid:Q54T87 OMA:SWGNRDN
Uniprot:Q54T87
Length = 586
Score = 718 (257.8 bits), Expect = 6.7e-73, Sum P(2) = 6.7e-73
Identities = 166/400 (41%), Positives = 240/400 (60%)
Query: 206 EYKKSLAIRVSGFDVPRPVKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDI 265
E++K + + G P P + F D F H QG+ PT IQ Q+ PIIL G D+
Sbjct: 93 EWRKKHNVLIEGKSQPNPFQKFTDYEFPRMFQHIF--QGFTAPTVIQGQSWPIILGGNDL 150
Query: 266 IGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEG-PIGVICAPTRELAHQIYLETKKFAKS 324
+G+A TGSGKT AF+LP ++ I+ P+ P+ ++ APTRELA QI K +
Sbjct: 151 VGLAATGSGKTLAFLLPALLKIISLPKRPSYGATPLVLVMAPTRELAQQIEEVCKTSIRG 210
Query: 325 HGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRM 384
IR YGG+ K+DQ + L+ G +IVI TPGRL D+L+ L S V YLVLDEADRM
Sbjct: 211 TSIRQLCAYGGLGKIDQSRILRNGVDIVIGTPGRLNDLLRKHHL--SSVQYLVLDEADRM 268
Query: 385 FDLGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANE-DI 443
D+GF PQI S++ QI +RQTL+FSAT P++V+ LA + L DP+++TVG + ++
Sbjct: 269 LDMGFMPQIESLIDQIPKERQTLMFSATWPKEVKLLASKFLKDPIKITVGSQELTGSINV 328
Query: 444 TQ-VVHVIP-SDAEKLPWLLEKLPGMID---DGDVLVFASKKTTVDEIESQLA-QKGFKA 497
TQ +V++ SD + + +++ ++ V+VF ++K D+ + L+ QK K+
Sbjct: 329 TQHIVNIDDLSDLQSDDLIYDEINKILTADPTNTVIVFCNEKYKCDDFQHYLSTQKNVKS 388
Query: 498 AALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHR 557
LH KDQ R L+ F+ +LIATDVAARGLDI S+K+V N+ + +++ +VHR
Sbjct: 389 IVLHSGKDQRMRESGLKLFRDHRIRILIATDVAARGLDIPSVKAVFNYRLPGNIEDYVHR 448
Query: 558 IGRTGRAGDKDGTAYTLVTQKEARFAGELVNSLIAAGQNV 597
IGRTGRAG K G A++ VT + +LV L Q +
Sbjct: 449 IGRTGRAG-KTGDAWSYVTTQTPNLR-DLVKILQRTNQKI 486
Score = 37 (18.1 bits), Expect = 6.7e-73, Sum P(2) = 6.7e-73
Identities = 12/33 (36%), Positives = 16/33 (48%)
Query: 712 GGSIGGDVNGTQTTGLTGFVSGGSIG-GEMSGT 743
GG+ G + NG G G +GG G G G+
Sbjct: 541 GGNWGNNRNGGGGGGSWGNRNGGGGGYGNNGGS 573
>ZFIN|ZDB-GENE-990415-272 [details] [associations]
symbol:vasa "vasa homolog" species:7955 "Danio
rerio" [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0043186 "P granule" evidence=IDA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0008406 "gonad development" evidence=IEP]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 ZFIN:ZDB-GENE-990415-272 GO:GO:0005524 GO:GO:0008406
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043186
HSSP:Q58083 HOGENOM:HOG000268804 HOVERGEN:HBG015893 KO:K13982
EMBL:AB005147 IPI:IPI00495861 RefSeq:NP_571132.1 UniGene:Dr.559
ProteinModelPortal:O42107 SMR:O42107 STRING:O42107 PRIDE:O42107
GeneID:30263 KEGG:dre:30263 CTD:30263 InParanoid:O42107
NextBio:20806710 ArrayExpress:O42107 Bgee:O42107 Uniprot:O42107
Length = 716
Score = 732 (262.7 bits), Expect = 2.0e-72, P = 2.0e-72
Identities = 186/487 (38%), Positives = 271/487 (55%)
Query: 132 RAGYDS-DEEVYAAAKAVDAGMLDYDSDDN--PVVVEKKKIEPIPALDHSLIDYEPFNKD 188
R G+ +EEV++ K A LD + +N P VV + P P + S I
Sbjct: 201 RGGFRGRNEEVFS--KVTTADKLDQEGSENAGPKVVY---VPPPPPEEESSI-------- 247
Query: 189 FYQDSASISGMSEQDVMEYKKSLAIRVSGFDVPRPVKTFEDCGFSTQLMHAISKQGYEKP 248
F + I+ D++ + VSG + P+ + TFE+ G L +SK GY KP
Sbjct: 248 FSHYATGINFDKYDDIL-------VDVSGSNPPKAIMTFEEAGLCDSLSKNVSKSGYVKP 300
Query: 249 TSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQ----PELQKEEGPIGVIC 304
T +Q +PII +GRD++ A+TGSGKTAAF+LP++ M + + + P +I
Sbjct: 301 TPVQKHGIPIISAGRDLMACAQTGSGKTAAFLLPILQRFMTDGVAASKFSEIQEPEAIIV 360
Query: 305 APTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLK 364
APTREL +QIYLE +KFA +R VYGG++ +E+ GC ++ ATPGRL D++
Sbjct: 361 APTRELINQIYLEARKFAYGTCVRPVVVYGGINTGYTIREVLKGCNVLCATPGRLHDLIG 420
Query: 365 MKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQ----IRPDRQTLLFSATMPRKVEKL 420
+ +S+V YLVLDEADRM D+GFEP++R +V + +RQTL+FSAT P ++++
Sbjct: 421 RGKIGLSKVRYLVLDEADRMLDMGFEPEMRKLVASPGMPSKEERQTLMFSATYPEDIQRM 480
Query: 421 AREILS-DPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEKLPGMIDDGDVLVFASK 479
A + L D + + VG VG A D+ Q V V K LLE L ++ +VF
Sbjct: 481 AADFLKVDYIFLAVGVVGGACSDVEQTV-VQVDQYSKRDQLLELLRATGNER-TMVFVET 538
Query: 480 KTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSI 539
K + D I + L Q+ ++HGD++Q R + L F+ G VL+AT VAARGLDI+ +
Sbjct: 539 KRSADFIATFLCQEKISTTSIHGDREQREREKALSDFRLGHCPVLVATSVAARGLDIEQV 598
Query: 540 KSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVT-QKEARFAGELVNSLIAAGQNVS 598
+ VVNFD+ +D +VHRIGRTGR G+ G A + + + A LV L A Q V
Sbjct: 599 QHVVNFDMPSSIDEYVHRIGRTGRCGNT-GRAVSFFNPESDTPLARSLVKVLSGAQQVVP 657
Query: 599 MELMDLA 605
L ++A
Sbjct: 658 KWLEEVA 664
>UNIPROTKB|D4ADV9 [details] [associations]
symbol:Ddx4 "Probable ATP-dependent RNA helicase DDX4"
species:10116 "Rattus norvegicus" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 IPI:IPI00782021 Ensembl:ENSRNOT00000060732
Uniprot:D4ADV9
Length = 674
Score = 728 (261.3 bits), Expect = 5.3e-72, P = 5.3e-72
Identities = 164/408 (40%), Positives = 246/408 (60%)
Query: 210 SLAIRVSGFDVPRPVKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIA 269
++ + VSG D P + TFE+ L + I+K GY K T +Q ++PI+L+GRD++ A
Sbjct: 247 TILVEVSGHDAPPAILTFEEANLCQTLNNNIAKAGYTKLTPVQKYSIPIVLAGRDLMACA 306
Query: 270 KTGSGKTAAFVLPMIVHIMDQ----PELQKEEGPIGVICAPTRELAHQIYLETKKFAKSH 325
+TGSGKTAAF+LP++ H+M ++ + P +I APTREL +QIYLE +KF+
Sbjct: 307 QTGSGKTAAFLLPILAHMMRDGITASRFKELQEPECIIVAPTRELINQIYLEARKFSFGT 366
Query: 326 GIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMF 385
+R +YGG +++ GC I+ ATPGRL+D++ + + + +V YLVLDEADRM
Sbjct: 367 CVRAVVIYGGTQFGHSIRQIVQGCNILCATPGRLMDIIGKEKIGLKQVKYLVLDEADRML 426
Query: 386 DLGFEPQIRSIVG----QIRPDRQTLLFSATMPRKVEKLAREIL-SDPVRVTVGEVGMAN 440
D+GF P+++ ++ + RQTLLFSAT P ++++LA E L S+ + V VG+VG A
Sbjct: 427 DMGFGPEMKKLISCPGMPSKEQRQTLLFSATFPEEIQRLAGEFLKSNYLFVAVGQVGGAC 486
Query: 441 EDITQVVHVIP--SDAEKLPWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAA 498
D+ Q + + S EKL +L I D +VF K D I + L Q+
Sbjct: 487 RDVQQSILQVGQYSKREKLVEILRN----IGDERTMVFVETKKKADFIATFLCQEKISTT 542
Query: 499 ALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRI 558
++HGD++Q R + L F+ G VL+AT VAARGLDI++++ V+NFD+ +D +VHRI
Sbjct: 543 SIHGDREQREREQALGDFRCGKCPVLVATSVAARGLDIENVQHVINFDLPSTIDEYVHRI 602
Query: 559 GRTGRAGDKDGTAYTLV-TQKEARFAGELVNSLIAAGQNVSMELMDLA 605
GRTGR G+ G A + T+ + A LV L A Q+V L ++A
Sbjct: 603 GRTGRCGNT-GRAISFFDTESDNHLAQPLVKVLSDAQQDVPAWLEEIA 649
>TAIR|locus:2057640 [details] [associations]
symbol:AT2G33730 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM;IDA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0006486 "protein glycosylation"
evidence=RCA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0008380
GO:GO:0006397 GO:GO:0003723 EMBL:U78721 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 KO:K12858 HOGENOM:HOG000268796
OMA:PIRNWKE EMBL:AY065194 EMBL:AY093244 IPI:IPI00525282 PIR:H84748
RefSeq:NP_180929.1 UniGene:At.27506 ProteinModelPortal:P93008
SMR:P93008 STRING:P93008 PaxDb:P93008 PRIDE:P93008
EnsemblPlants:AT2G33730.1 GeneID:817938 KEGG:ath:AT2G33730
GeneFarm:938 TAIR:At2g33730 InParanoid:P93008 PhylomeDB:P93008
ProtClustDB:CLSN2683508 Genevestigator:P93008 GermOnline:AT2G33730
Uniprot:P93008
Length = 733
Score = 727 (261.0 bits), Expect = 6.7e-72, P = 6.7e-72
Identities = 179/493 (36%), Positives = 276/493 (55%)
Query: 132 RAGYDSDEEVYAAAKAVDAGMLDYDSDDNPVVVEKKKIEPIPALDHSLID-YEPFNK--D 188
RAG D E+ AAK + M D + +VEK + + D Y+ F+ D
Sbjct: 219 RAGMDRREQKKQAAKH-EKEMRD-EIRKKDGIVEKPEEAAAQRVREEAADTYDSFDMRVD 276
Query: 189 FYQDSASISGMSEQDVMEYKKSLAIRVSGFDVPRPVKTFEDCGFSTQLMHAISKQGYEKP 248
+ + M+E+D +++ I G +PRP++++E+ +++L+ A+ + GY+KP
Sbjct: 277 RHWSDKRLEEMTERDWRIFREDFNISYKGSRIPRPMRSWEESKLTSELLKAVERAGYKKP 336
Query: 249 TSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKE---EGPIGVICA 305
+ IQ A+P+ L RD+IGIA+TGSGKTAAFVLPM+ +I P + +E EGP V+ A
Sbjct: 337 SPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLAYISRLPPMSEENETEGPYAVVMA 396
Query: 306 PTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKM 365
PTRELA QI ET KFA G RV+++ GG S +Q ++ GCEIVIATPGRLID L+
Sbjct: 397 PTRELAQQIEEETVKFAHYLGFRVTSIVGGQSIEEQGLKITQGCEIVIATPGRLIDCLER 456
Query: 366 KALTMSRVTYLVLDEADRMFDLGFEPQIRSIV-----GQIRPDRQTL-LFSATMPRKVEK 419
+ +++ Y+VLDEADRM D+GFEPQ+ ++ ++P+ + L + R
Sbjct: 457 RYAVLNQCNYVVLDEADRMIDMGFEPQVAGVLDAMPSSNLKPENEEEELDEKKIYRTTYM 516
Query: 420 LAREILSDPVRVT--------VGEVGMANEDITQVV--HVIP-SDAEKLPWLLEKLPGMI 468
+ + R+ V +G A + T ++ HVI ++EK + L+KL +
Sbjct: 517 FSATMPPGVERLARKYLRNPVVVTIGTAGKT-TDLISQHVIMMKESEKF-FRLQKLLDEL 574
Query: 469 DDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATD 528
+ +VF + K D I L + G++ LHG K Q R L+ F++ Y+VL+ATD
Sbjct: 575 GEKTAIVFVNTKKNCDSIAKNLDKAGYRVTTLHGGKSQEQREISLEGFRAKRYNVLVATD 634
Query: 529 VAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELVN 588
V RG+DI + V+N+D+ + ++M+ HRIGRTGRAG K G A + +T + +L
Sbjct: 635 VVGRGIDIPDVAHVINYDMPKHIEMYTHRIGRTGRAG-KSGVATSFLTLHDTEVFYDLKQ 693
Query: 589 SLIAAGQNVSMEL 601
L+ + V EL
Sbjct: 694 MLVQSNSAVPPEL 706
>GENEDB_PFALCIPARUM|PFE0925c [details] [associations]
symbol:PFE0925c "snrnp protein, putative"
species:5833 "Plasmodium falciparum" [GO:0020011 "apicoplast"
evidence=RCA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
EMBL:AL844504 InterPro:IPR014014 PROSITE:PS51195 KO:K12858
HSSP:Q58083 HOGENOM:HOG000268796 RefSeq:XP_001351742.1
ProteinModelPortal:Q8I0W7 EnsemblProtists:PFE0925c:mRNA
GeneID:813000 KEGG:pfa:PFE0925c EuPathDB:PlasmoDB:PF3D7_0518500
ProtClustDB:CLSZ2514918 Uniprot:Q8I0W7
Length = 1123
Score = 452 (164.2 bits), Expect = 7.0e-72, Sum P(3) = 7.0e-72
Identities = 97/205 (47%), Positives = 131/205 (63%)
Query: 199 MSEQDVMEYKKSLAIRVSGFDVPRPVKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPI 258
M+++D +++ I + G VP P++ +E+ S L+ AI K YEKPT IQ QA+PI
Sbjct: 672 MTDRDWRIFREDNEIYIKGGVVPPPIRKWEESNLSNDLLKAIKKAKYEKPTPIQMQAIPI 731
Query: 259 ILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKE---EGPIGVICAPTRELAHQIY 315
L RD+IGIA+TGSGKTAAFVLPM+ ++ P L E +GP ++ AP+RELA QIY
Sbjct: 732 ALEMRDLIGIAETGSGKTAAFVLPMLSYVKQLPPLTYETSQDGPYALVIAPSRELAIQIY 791
Query: 316 LETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTY 375
ET KFA R AV GG + Q EL+ G EIVI TPGRL D L+ +++ Y
Sbjct: 792 EETNKFASYCSCRTVAVVGGRNAEAQAFELRRGVEIVIGTPGRLQDCLEKAYTVLNQCNY 851
Query: 376 LVLDEADRMFDLGFEPQIRSIVGQI 400
++LDEADRM D+GFE + I+ +I
Sbjct: 852 VILDEADRMMDMGFEDTVHYILDKI 876
Score = 347 (127.2 bits), Expect = 7.0e-72, Sum P(3) = 7.0e-72
Identities = 76/215 (35%), Positives = 125/215 (58%)
Query: 387 LGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQV 446
L + ++ + G R R T +FSATMP VE+L+R+ L P +++G+ G I Q
Sbjct: 888 LALQEEMMTKAGH-RLYRLTQMFSATMPPSVERLSRKYLRAPAYISIGDPGAGKRSIEQK 946
Query: 447 VHVIPSDAEKLPWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQ 506
+ + +K L+++ M + ++VF ++K D I + + +KA ALHG K Q
Sbjct: 947 LEFLTEGKKKQK--LQEILEMYEP-PIIVFVNQKKVADIISKSITKMKYKAVALHGGKAQ 1003
Query: 507 ASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGD 566
R + L FK+ + +L+ATDVA RG+D+ +K V+NFD+ +D++ + HRIGRTGRAG
Sbjct: 1004 EIREQTLSAFKNAEFDILVATDVAGRGIDVHGVKLVINFDMPKDIESYTHRIGRTGRAGM 1063
Query: 567 KDGTAYTLVTQKEARFAGELVNSLIAAGQNVSMEL 601
K G A + +T+ ++ +L LI++ V +EL
Sbjct: 1064 K-GLAISFITEHDSHLFYDLKQFLISSNNIVPLEL 1097
Score = 49 (22.3 bits), Expect = 7.0e-72, Sum P(3) = 7.0e-72
Identities = 11/36 (30%), Positives = 18/36 (50%)
Query: 40 HDNYEDTDLDNIDYEDNDAAKAANDTGNGAEKEEID 75
+DN +D D DN D +ND N N ++++
Sbjct: 68 NDNNDDNDDDNNDDNNNDVNNN-NVNNNDVNNDDVN 102
Score = 42 (19.8 bits), Expect = 3.8e-71, Sum P(3) = 3.8e-71
Identities = 18/67 (26%), Positives = 29/67 (43%)
Query: 9 EGFNINRQTSYSFEQSQAPQRLYVPPSSRYSHDNYEDTDLDNIDYEDNDAAKAANDTGNG 68
E +I R+ + E+ LY+ + + S DN D DN D DND +D N
Sbjct: 31 ESIHIKRENKLTNEEDN----LYIKRNEQ-SDDN---DDNDNND--DNDNNDDNDDDNND 80
Query: 69 AEKEEID 75
+++
Sbjct: 81 DNNNDVN 87
Score = 42 (19.8 bits), Expect = 3.9e-27, Sum P(2) = 3.9e-27
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 20 SFEQSQ-APQRLYVPPSSRYSHDNYEDTD 47
++E SQ P L + PS + YE+T+
Sbjct: 767 TYETSQDGPYALVIAPSRELAIQIYEETN 795
>UNIPROTKB|Q8I0W7 [details] [associations]
symbol:PFE0925c "Snrnp protein, putative" species:36329
"Plasmodium falciparum 3D7" [GO:0020011 "apicoplast" evidence=RCA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 EMBL:AL844504
InterPro:IPR014014 PROSITE:PS51195 KO:K12858 HSSP:Q58083
HOGENOM:HOG000268796 RefSeq:XP_001351742.1
ProteinModelPortal:Q8I0W7 EnsemblProtists:PFE0925c:mRNA
GeneID:813000 KEGG:pfa:PFE0925c EuPathDB:PlasmoDB:PF3D7_0518500
ProtClustDB:CLSZ2514918 Uniprot:Q8I0W7
Length = 1123
Score = 452 (164.2 bits), Expect = 7.0e-72, Sum P(3) = 7.0e-72
Identities = 97/205 (47%), Positives = 131/205 (63%)
Query: 199 MSEQDVMEYKKSLAIRVSGFDVPRPVKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPI 258
M+++D +++ I + G VP P++ +E+ S L+ AI K YEKPT IQ QA+PI
Sbjct: 672 MTDRDWRIFREDNEIYIKGGVVPPPIRKWEESNLSNDLLKAIKKAKYEKPTPIQMQAIPI 731
Query: 259 ILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKE---EGPIGVICAPTRELAHQIY 315
L RD+IGIA+TGSGKTAAFVLPM+ ++ P L E +GP ++ AP+RELA QIY
Sbjct: 732 ALEMRDLIGIAETGSGKTAAFVLPMLSYVKQLPPLTYETSQDGPYALVIAPSRELAIQIY 791
Query: 316 LETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTY 375
ET KFA R AV GG + Q EL+ G EIVI TPGRL D L+ +++ Y
Sbjct: 792 EETNKFASYCSCRTVAVVGGRNAEAQAFELRRGVEIVIGTPGRLQDCLEKAYTVLNQCNY 851
Query: 376 LVLDEADRMFDLGFEPQIRSIVGQI 400
++LDEADRM D+GFE + I+ +I
Sbjct: 852 VILDEADRMMDMGFEDTVHYILDKI 876
Score = 347 (127.2 bits), Expect = 7.0e-72, Sum P(3) = 7.0e-72
Identities = 76/215 (35%), Positives = 125/215 (58%)
Query: 387 LGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQV 446
L + ++ + G R R T +FSATMP VE+L+R+ L P +++G+ G I Q
Sbjct: 888 LALQEEMMTKAGH-RLYRLTQMFSATMPPSVERLSRKYLRAPAYISIGDPGAGKRSIEQK 946
Query: 447 VHVIPSDAEKLPWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQ 506
+ + +K L+++ M + ++VF ++K D I + + +KA ALHG K Q
Sbjct: 947 LEFLTEGKKKQK--LQEILEMYEP-PIIVFVNQKKVADIISKSITKMKYKAVALHGGKAQ 1003
Query: 507 ASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGD 566
R + L FK+ + +L+ATDVA RG+D+ +K V+NFD+ +D++ + HRIGRTGRAG
Sbjct: 1004 EIREQTLSAFKNAEFDILVATDVAGRGIDVHGVKLVINFDMPKDIESYTHRIGRTGRAGM 1063
Query: 567 KDGTAYTLVTQKEARFAGELVNSLIAAGQNVSMEL 601
K G A + +T+ ++ +L LI++ V +EL
Sbjct: 1064 K-GLAISFITEHDSHLFYDLKQFLISSNNIVPLEL 1097
Score = 49 (22.3 bits), Expect = 7.0e-72, Sum P(3) = 7.0e-72
Identities = 11/36 (30%), Positives = 18/36 (50%)
Query: 40 HDNYEDTDLDNIDYEDNDAAKAANDTGNGAEKEEID 75
+DN +D D DN D +ND N N ++++
Sbjct: 68 NDNNDDNDDDNNDDNNNDVNNN-NVNNNDVNNDDVN 102
Score = 42 (19.8 bits), Expect = 3.8e-71, Sum P(3) = 3.8e-71
Identities = 18/67 (26%), Positives = 29/67 (43%)
Query: 9 EGFNINRQTSYSFEQSQAPQRLYVPPSSRYSHDNYEDTDLDNIDYEDNDAAKAANDTGNG 68
E +I R+ + E+ LY+ + + S DN D DN D DND +D N
Sbjct: 31 ESIHIKRENKLTNEEDN----LYIKRNEQ-SDDN---DDNDNND--DNDNNDDNDDDNND 80
Query: 69 AEKEEID 75
+++
Sbjct: 81 DNNNDVN 87
Score = 42 (19.8 bits), Expect = 3.9e-27, Sum P(2) = 3.9e-27
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 20 SFEQSQ-APQRLYVPPSSRYSHDNYEDTD 47
++E SQ P L + PS + YE+T+
Sbjct: 767 TYETSQDGPYALVIAPSRELAIQIYEETN 795
>TAIR|locus:2034481 [details] [associations]
symbol:STRS1 "STRESS RESPONSE SUPPRESSOR 1" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA;ISS] [GO:0005829 "cytosol" evidence=IDA] [GO:0001510
"RNA methylation" evidence=RCA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005829 GO:GO:0005524 GO:GO:0005730
EMBL:AC079041 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268804 KO:K14811
OMA:DRILVFC EMBL:AC074309 EMBL:AY080680 EMBL:AY117298 EMBL:AJ010458
IPI:IPI00547293 PIR:A86444 PIR:T51739 RefSeq:NP_174479.1
UniGene:At.20258 ProteinModelPortal:Q9C551 SMR:Q9C551 STRING:Q9C551
PaxDb:Q9C551 PRIDE:Q9C551 EnsemblPlants:AT1G31970.1 GeneID:840087
KEGG:ath:AT1G31970 GeneFarm:911 TAIR:At1g31970 InParanoid:Q9C551
PhylomeDB:Q9C551 ProtClustDB:CLSN2682598 Genevestigator:Q9C551
GermOnline:AT1G31970 Uniprot:Q9C551
Length = 537
Score = 726 (260.6 bits), Expect = 8.6e-72, P = 8.6e-72
Identities = 164/387 (42%), Positives = 235/387 (60%)
Query: 224 VKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPM 283
+KTF + ++ +EKP+ IQ P +L GRD+IGIAKTGSGKT AF +P
Sbjct: 115 LKTFAESNLPENVLDCCKT--FEKPSPIQSHTWPFLLDGRDLIGIAKTGSGKTLAFGIPA 172
Query: 284 IVHIMDQPEL----QKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKL 339
I+H++ + + K+ P ++ +PTRELA QI ++ + G++ VYGG SK
Sbjct: 173 IMHVLKKNKKIGGGSKKVNPTCLVLSPTRELAVQISDVLREAGEPCGLKSICVYGGSSKG 232
Query: 340 DQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQ 399
Q +++G +IVI TPGRL D+++ L +S V+++VLDEADRM D+GFE +R I+
Sbjct: 233 PQISAIRSGVDIVIGTPGRLRDLIESNVLRLSDVSFVVLDEADRMLDMGFEEPVRFILSN 292
Query: 400 IRPDRQTLLFSATMPRKVEKLAREILS-DPVRVTVGEVGMA-NEDITQVVHVIPSDA--E 455
RQ ++FSAT P V KLA+E + +P++V +G V +A N D+ Q++ V+ A +
Sbjct: 293 TNKVRQMVMFSATWPLDVHKLAQEFMDPNPIKVIIGSVDLAANHDVMQIIEVLDERARDQ 352
Query: 456 KLPWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQK 515
+L LLEK VLVFA K + +E L Q+G+KA ++HG+K Q+ R L
Sbjct: 353 RLIALLEKYHKS-QKNRVLVFALYKVEAERLERFLQQRGWKAVSIHGNKAQSERTRSLSL 411
Query: 516 FKSGVYHVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLV 575
FK G +L+ATDVAARGLDI ++ V+N+ + +VHRIGRTGRAG K G A+T
Sbjct: 412 FKEGSCPLLVATDVAARGLDIPDVEVVINYTFPLTTEDYVHRIGRTGRAGKK-GVAHTFF 470
Query: 576 TQKEARFAGELVNSLIAAGQNVSMELM 602
T AGELVN L AGQ V +L+
Sbjct: 471 TPLNKGLAGELVNVLREAGQVVPADLL 497
>ZFIN|ZDB-GENE-030131-1927 [details] [associations]
symbol:ddx41 "DEAD (Asp-Glu-Ala-Asp) box
polypeptide 41" species:7955 "Danio rerio" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] InterPro:IPR001650 InterPro:IPR001878
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS50158
PROSITE:PS51194 SMART:SM00343 SMART:SM00490
ZFIN:ZDB-GENE-030131-1927 GO:GO:0005524 GO:GO:0008270 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00620000087942
EMBL:CABZ01072950 EMBL:CABZ01072951 EMBL:CABZ01072952
IPI:IPI00961669 Ensembl:ENSDART00000061987 Bgee:F1QQ09
Uniprot:F1QQ09
Length = 473
Score = 726 (260.6 bits), Expect = 8.6e-72, P = 8.6e-72
Identities = 170/412 (41%), Positives = 239/412 (58%)
Query: 208 KKSLAIRVSGFDVPRPVKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIG 267
+K I V G +P P+K+F + F ++ + K+G PT IQ Q +P ILSGRD+IG
Sbjct: 20 RKKYHILVEGEGIPAPIKSFREMKFPQAILKGLKKKGIVHPTPIQIQGIPTILSGRDMIG 79
Query: 268 IAKTGSGKTAAFVLPMIVHIMDQPE---LQKEEGPIGVICAPTRELA----HQIYLETKK 320
IA TGSGKT F LP+I+ ++Q + K EGP G+I P+ +A H I K
Sbjct: 80 IAFTGSGKTLVFTLPIIMFCLEQEKRLPFCKREGPYGLIICPSVNVAKHTHHGIIEYYCK 139
Query: 321 FAKSHG---IRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLV 377
+ G +R + GGMS +Q + +K +ATPGRL+D+L K +++ YL
Sbjct: 140 LLEDEGAPQMRCALCIGGMSVKEQMEVVK------LATPGRLMDLLNKKMVSLDICRYLA 193
Query: 378 LDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVG 437
LDEADRM D+GFE IR+I + RQTLLFSATMP+K++ A+ L P+ + VG G
Sbjct: 194 LDEADRMIDMGFEEDIRTIFSYFKGQRQTLLFSATMPKKIQNFAKSALVKPITINVGRAG 253
Query: 438 MANEDITQVVHVIPSDAEKLPWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKA 497
A+ D+ Q V + +A K+ +LLE L VL+FA KK VD I L KG +A
Sbjct: 254 AASLDVIQEVEYVKEEA-KMVYLLECLQKT--PPPVLIFAEKKADVDAIHEYLLLKGVEA 310
Query: 498 AALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHR 557
A+HG KDQ R + ++ FK G VL+ATDVA++GLD +I+ VVN+D+ +++ +VHR
Sbjct: 311 VAIHGGKDQEERTKAIEAFKEGKKDVLVATDVASKGLDFPAIQHVVNYDMPEEIENYVHR 370
Query: 558 IGRTGRAGDKDGTAYTLVTQK-EARFAGELVNSLIAAGQNVSMELMDLAMKD 608
IGRTGR+G K G A T + + + +L L+ A Q V L L D
Sbjct: 371 IGRTGRSG-KTGIATTFINKGCDESVLMDLKALLVEAKQKVPPVLQVLHTGD 421
>ASPGD|ASPL0000069536 [details] [associations]
symbol:AN7424 species:162425 "Emericella nidulans"
[GO:0000464 "endonucleolytic cleavage in ITS1 upstream of 5.8S rRNA
from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0030687 "preribosome, large subunit precursor"
evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0003723 EMBL:AACD01000129 EMBL:BN001304 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
eggNOG:COG0513 HOGENOM:HOG000268804 KO:K14811 RefSeq:XP_680693.1
GeneID:2869574 KEGG:ani:AN7424.2 OrthoDB:EOG42JS0S Uniprot:Q5AWA6
Length = 488
Score = 725 (260.3 bits), Expect = 1.1e-71, P = 1.1e-71
Identities = 176/424 (41%), Positives = 248/424 (58%)
Query: 190 YQDSASISGMSEQDVMEYKKSLAIRVS--GFDVP--RPVKTFEDCGFSTQLMHAISKQGY 245
Y S ++ + + ++ ++ +I+++ D P RP+ +F S + ++A G+
Sbjct: 35 YFQSPALDNVPQTEIDKFLSDHSIKITDASADKPSLRPIISFSFLPPSNKDLYA-PLDGF 93
Query: 246 EKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICA 305
PT+IQ P++ +GRD+IGIA+TGSGKT AF LP + ++D QK P+ V+ +
Sbjct: 94 ASPTAIQSATWPLLFAGRDVIGIAETGSGKTLAFGLPCLKKVLDLKTKQKSCRPLAVVIS 153
Query: 306 PTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKM 365
PTRELA QIY + KFA+ I+V+ ++GG+ K +Q + LK+ +V+ATPGRL D+
Sbjct: 154 PTRELAMQIYDQLVKFAEKVDIQVACIFGGVKKDEQREALKSAA-VVVATPGRLKDLQND 212
Query: 366 KALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPD-RQTLLFSATMPRKVEKLAREI 424
+L + RV YLVLDEADRM D GFE I+ I+ + RQT++F+AT P V LA
Sbjct: 213 GSLDLGRVKYLVLDEADRMLDKGFEQDIKDIISPMPVSKRQTVMFTATWPPIVRNLASTF 272
Query: 425 LSDPVRVTVG----EVGMANEDITQVVHVI-PSDAE-KLPWLLEKLPGMIDDGDVLVFAS 478
++ PV VT+G AN I QVV V+ P + E +L +L + D VL F
Sbjct: 273 MTSPVTVTIGGDPSADPRANSRIKQVVEVVKPHEKEQRLVQILNRHQRGTPD-KVLAFCL 331
Query: 479 KKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKS 538
K +E L KGFK A +HGD Q R L+ FKSG VL+ATDVAARGLDI
Sbjct: 332 YKKEAMRVERLLRTKGFKVAGIHGDLSQQERFRSLEAFKSGAATVLVATDVAARGLDIPH 391
Query: 539 IKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELVNSLIAAGQNVS 598
+K VVN ++ +VHRIGRTGRAG DG A TL T+ + +G L+N L AA Q V
Sbjct: 392 VKLVVNVTFPLTVEDYVHRIGRTGRAG-ADGHAITLFTETDKAQSGALINVLKAANQEVP 450
Query: 599 MELM 602
L+
Sbjct: 451 EALL 454
>ASPGD|ASPL0000051195 [details] [associations]
symbol:AN1634 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0008380 EMBL:BN001307
GO:GO:0006397 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 EMBL:AACD01000026 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 KO:K12858 HSSP:P09052
HOGENOM:HOG000268796 OMA:PIRNWKE RefSeq:XP_659238.1
ProteinModelPortal:Q5BCU6 EnsemblFungi:CADANIAT00008272
GeneID:2874876 KEGG:ani:AN1634.2 OrthoDB:EOG4KPXK0 Uniprot:Q5BCU6
Length = 782
Score = 465 (168.7 bits), Expect = 2.1e-71, Sum P(3) = 2.1e-71
Identities = 94/238 (39%), Positives = 146/238 (61%)
Query: 188 DFYQDSASISGMSEQDVMEYKKSLAIRVSGFDVPRPVKTFEDCGFSTQLMHAISKQGYEK 247
D + + M E+D +K+ I G VP P++++++ G +L+ + + GY++
Sbjct: 309 DKHWSEKKLEHMRERDWRIFKEDFNIATKGGSVPNPMRSWDESGLPKRLLELVDRVGYKE 368
Query: 248 PTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQP-----ELQKEEGPIGV 302
PT IQ A+PI + RD+IG+A TGSGKTAAF+LP++ +I + P E +K +GP +
Sbjct: 369 PTPIQRAAIPIAMQSRDLIGVAVTGSGKTAAFLLPLLCYIAELPRIDEFEWRKNDGPYAI 428
Query: 303 ICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDM 362
+ APTRELA QI +E KKF + G V ++ GG S +Q L+ G EI+IATPGRL+D
Sbjct: 429 VLAPTRELAQQIEIEAKKFTEPLGFNVVSIVGGHSFEEQAYSLRNGAEIIIATPGRLVDC 488
Query: 363 LKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQI-----RPDRQTLLFSATMPR 415
++ + L +S+ Y+++DEADRM DLGFE + I+ + +PD + S+ M R
Sbjct: 489 IERRMLVLSQCCYVIMDEADRMIDLGFEEPVNKILDALPVTNEKPDTEEAEDSSAMSR 546
Score = 323 (118.8 bits), Expect = 2.1e-71, Sum P(3) = 2.1e-71
Identities = 71/192 (36%), Positives = 112/192 (58%)
Query: 404 RQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEK 463
RQT++++ATMP VE++AR+ L P VT+G G A + + Q V +I + ++ ++
Sbjct: 555 RQTMMYTATMPTAVERIARKYLRRPAIVTIGSAGEAVDTVEQRVEMIAGEDKRK----KR 610
Query: 464 LPGMIDDGD----VLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSG 519
L ++ GD ++VF + K D I ++ Q GF + LHG K Q R L ++G
Sbjct: 611 LGEILSSGDFRPPIIVFVNIKRNCDAIAREIKQWGFSSVTLHGSKTQEQREAALASVRNG 670
Query: 520 VYHVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKE 579
VL+ATD+A RG+D+ + V+NF++A ++ + HRIGRTGRAG K G A T + ++
Sbjct: 671 STDVLVATDLAGRGIDVPDVSLVINFNMATSIESYTHRIGRTGRAG-KSGVAITFLGNED 729
Query: 580 ARFAGELVNSLI 591
A +L LI
Sbjct: 730 ADVMYDLKQMLI 741
Score = 38 (18.4 bits), Expect = 2.1e-71, Sum P(3) = 2.1e-71
Identities = 10/53 (18%), Positives = 23/53 (43%)
Query: 116 LMAKKDVGLTLAADALRAGYDSDEEVYAAAKAVDAGMLDYDSDDNPVVVEKKK 168
+ ++ D G T + + ++ ++E A A + + D N +K+K
Sbjct: 167 MRSRNDSGTTKSDKKVDKRFNEEDEAAAQAALIKQRYMGADQTSNFSAKKKRK 219
>UNIPROTKB|Q83DM8 [details] [associations]
symbol:rhlE "ATP-dependent RNA helicase" species:227377
"Coxiella burnetii RSA 493" [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
EMBL:AE016828 GenomeReviews:AE016828_GR InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268807 KO:K11927 OMA:HLIKQHN
RefSeq:NP_819700.2 ProteinModelPortal:Q83DM8 GeneID:1208557
KEGG:cbu:CBU_0670 PATRIC:17930019 ProtClustDB:CLSK914228
BioCyc:CBUR227377:GJ7S-666-MONOMER Uniprot:Q83DM8
Length = 420
Score = 721 (258.9 bits), Expect = 2.9e-71, P = 2.9e-71
Identities = 153/364 (42%), Positives = 225/364 (61%)
Query: 226 TFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIV 285
+FE G S +L+ AI +QGY +PT +Q QA+P+IL RD++ A+TG+GKTA F LP++
Sbjct: 11 SFEVLGLSAELLRAIREQGYVEPTPVQRQAIPVILQARDVMVTAQTGTGKTAGFTLPLLQ 70
Query: 286 HI-MDQPELQKEEGPI--GVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQF 342
+ + +P LQ+ P+ +I PTRELA Q++ + + K ++ + V+GG+S Q
Sbjct: 71 RLFVSRPPLQRSAKPVIRALILTPTRELAVQVFECVRAYGKYLPLKATVVHGGVSIKPQI 130
Query: 343 KELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRP 402
L+ G +I++ATPGRL+D++ L +SRV + VLDEADRM D+GF P IR I+ +
Sbjct: 131 NHLRRGVDILVATPGRLLDLVNQGVLNLSRVEFFVLDEADRMLDMGFLPDIRRILKLLPE 190
Query: 403 DRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLE 462
RQ LLFSAT +++++L ++L P + V A IT VVH P D ++ LL
Sbjct: 191 SRQNLLFSATFSKEIKELTDKLLHSPALIEVARRNTAAARITHVVH--PVDRQRKRELLS 248
Query: 463 KLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYH 522
+ G + VLVF K + + QL G +AA+HG+K QA+RM L +FK G
Sbjct: 249 FMIGSKNWRQVLVFTRTKHGANRLSQQLESDGLSSAAIHGNKSQAARMRALTQFKQGKIR 308
Query: 523 VLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARF 582
VL+ATDVAARGLDI + V+NF++ +VHR+GRTGRA + DG A +LV+ E R
Sbjct: 309 VLVATDVAARGLDIDKLPHVINFELPDAAKDYVHRVGRTGRASN-DGVAISLVSGDEVRL 367
Query: 583 AGEL 586
++
Sbjct: 368 LRDI 371
>TIGR_CMR|CBU_0670 [details] [associations]
symbol:CBU_0670 "ATP-dependent RNA helicase RhlE,
putative" species:227377 "Coxiella burnetii RSA 493" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE016828 GenomeReviews:AE016828_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807 KO:K11927
OMA:HLIKQHN RefSeq:NP_819700.2 ProteinModelPortal:Q83DM8
GeneID:1208557 KEGG:cbu:CBU_0670 PATRIC:17930019
ProtClustDB:CLSK914228 BioCyc:CBUR227377:GJ7S-666-MONOMER
Uniprot:Q83DM8
Length = 420
Score = 721 (258.9 bits), Expect = 2.9e-71, P = 2.9e-71
Identities = 153/364 (42%), Positives = 225/364 (61%)
Query: 226 TFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIV 285
+FE G S +L+ AI +QGY +PT +Q QA+P+IL RD++ A+TG+GKTA F LP++
Sbjct: 11 SFEVLGLSAELLRAIREQGYVEPTPVQRQAIPVILQARDVMVTAQTGTGKTAGFTLPLLQ 70
Query: 286 HI-MDQPELQKEEGPI--GVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQF 342
+ + +P LQ+ P+ +I PTRELA Q++ + + K ++ + V+GG+S Q
Sbjct: 71 RLFVSRPPLQRSAKPVIRALILTPTRELAVQVFECVRAYGKYLPLKATVVHGGVSIKPQI 130
Query: 343 KELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRP 402
L+ G +I++ATPGRL+D++ L +SRV + VLDEADRM D+GF P IR I+ +
Sbjct: 131 NHLRRGVDILVATPGRLLDLVNQGVLNLSRVEFFVLDEADRMLDMGFLPDIRRILKLLPE 190
Query: 403 DRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLE 462
RQ LLFSAT +++++L ++L P + V A IT VVH P D ++ LL
Sbjct: 191 SRQNLLFSATFSKEIKELTDKLLHSPALIEVARRNTAAARITHVVH--PVDRQRKRELLS 248
Query: 463 KLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYH 522
+ G + VLVF K + + QL G +AA+HG+K QA+RM L +FK G
Sbjct: 249 FMIGSKNWRQVLVFTRTKHGANRLSQQLESDGLSSAAIHGNKSQAARMRALTQFKQGKIR 308
Query: 523 VLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARF 582
VL+ATDVAARGLDI + V+NF++ +VHR+GRTGRA + DG A +LV+ E R
Sbjct: 309 VLVATDVAARGLDIDKLPHVINFELPDAAKDYVHRVGRTGRASN-DGVAISLVSGDEVRL 367
Query: 583 AGEL 586
++
Sbjct: 368 LRDI 371
>TIGR_CMR|GSU_0914 [details] [associations]
symbol:GSU_0914 "ATP-dependent RNA helicase RhlE"
species:243231 "Geobacter sulfurreducens PCA" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008152
"metabolic process" evidence=ISS] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:AE017180
GenomeReviews:AE017180_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 KO:K11927 OMA:KHRAKRV RefSeq:NP_951968.1
ProteinModelPortal:Q74EP8 GeneID:2687174 KEGG:gsu:GSU0914
PATRIC:22024603 ProtClustDB:CLSK924451
BioCyc:GSUL243231:GH27-925-MONOMER Uniprot:Q74EP8
Length = 447
Score = 720 (258.5 bits), Expect = 3.7e-71, P = 3.7e-71
Identities = 160/382 (41%), Positives = 230/382 (60%)
Query: 227 FEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVH 286
F+ GF + I+ GYE PT IQ QA+P +++GRD++G+A+TG+GKTAAF LP I+H
Sbjct: 3 FKSFGFHPAVATGIAAAGYETPTPIQAQAIPAVMAGRDVMGLAQTGTGKTAAFALP-ILH 61
Query: 287 IMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELK 346
+ Q E + ++ APTRELA QI + +R VYGG+ Q ++LK
Sbjct: 62 RLQQGERGRVRA---LVIAPTRELAEQINDSFVTLGRQTRLRSVTVYGGVGVNPQVQKLK 118
Query: 347 AGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQT 406
AG E+V+A PGRL+D + + +SR+ LVLDEAD+MFD+GF P IR ++ + P RQT
Sbjct: 119 AGAEVVVACPGRLLDHIAQGTIDLSRLEVLVLDEADQMFDMGFLPDIRRVLKHLPPRRQT 178
Query: 407 LLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVI-PSDAE-KLPWLLEKL 464
LLFSATMP + LA++IL DPV V VG V A +T V H + P + K P LLE L
Sbjct: 179 LLFSATMPIDIRTLAQDILVDPVTVQVGTVAPA---VT-VAHALYPVEQHLKTPLLLELL 234
Query: 465 PGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVL 524
D VL+F K + QL + G++AA+L G+ Q R L F+ G + +L
Sbjct: 235 RHT-DTESVLIFTRTKHRAKRLGEQLEKAGYRAASLQGNLSQNRRQAALDGFRDGTFQIL 293
Query: 525 IATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAG 584
+ATD+AARG+D+ + V+N+DI + ++HRIGRTGRA + G A+TLVT +
Sbjct: 294 VATDIAARGIDVSQVSHVINYDIPDTAEAYIHRIGRTGRAA-RSGDAFTLVTSDDGAMVR 352
Query: 585 ELVNSLIAAGQNVSMELMDLAM 606
+ SL A + +++ D ++
Sbjct: 353 AIERSLGAPIERRTVQGFDYSV 374
>RGD|1308793 [details] [associations]
symbol:Ddx4 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 4"
species:10116 "Rattus norvegicus" [GO:0000237 "leptotene"
evidence=IEA;ISO] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA;ISO] [GO:0005737 "cytoplasm" evidence=ISO;ISS]
[GO:0007141 "male meiosis I" evidence=IEA;ISO] [GO:0007275
"multicellular organismal development" evidence=IEA] [GO:0007283
"spermatogenesis" evidence=IEA;ISO] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0030317 "sperm motility"
evidence=IEA;ISO] [GO:0030529 "ribonucleoprotein complex"
evidence=ISO] [GO:0032880 "regulation of protein localization"
evidence=IEA;ISO] [GO:0033391 "chromatoid body" evidence=IEA;ISO]
[GO:0044464 "cell part" evidence=ISO] [GO:0048471 "perinuclear
region of cytoplasm" evidence=IEA;ISO] [GO:0071546 "pi-body"
evidence=ISO;ISS] [GO:0071547 "piP-body" evidence=ISO;ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 RGD:1308793 GO:GO:0007275 GO:GO:0005524 GO:GO:0005634
GO:GO:0048471 GO:GO:0032880 GO:GO:0007283 GO:GO:0003676
GO:GO:0030317 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0071546 GO:GO:0033391 GO:GO:0007141 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOVERGEN:HBG015893 CTD:54514 KO:K13982 OrthoDB:EOG4W6NVF
GO:GO:0071547 GO:GO:0000237 EMBL:S75275 IPI:IPI00208943 PIR:JC2534
RefSeq:NP_001071115.1 UniGene:Rn.198577 ProteinModelPortal:Q64060
SMR:Q64060 STRING:Q64060 PRIDE:Q64060 GeneID:310090 KEGG:rno:310090
NextBio:661610 Genevestigator:Q64060 Uniprot:Q64060
Length = 713
Score = 719 (258.2 bits), Expect = 4.8e-71, P = 4.8e-71
Identities = 163/407 (40%), Positives = 248/407 (60%)
Query: 210 SLAIRVSGFDVPRPVKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIA 269
++ + VSG D P + TFE+ L + I+K GY K T +Q ++PI+L+GRD++ A
Sbjct: 258 TILVEVSGHDAPPAILTFEEANLCQTLNNNIAKAGYTKLTPVQKYSIPIVLAGRDLMACA 317
Query: 270 KTGSGKTAAFVLPMIVHIMDQ----PELQKEEGPIGVICAPTRELAHQIYLETKKFAKSH 325
+TGSGKTAAF+LP++ H+M ++ + P +I APTREL +QIYLE +KF+
Sbjct: 318 QTGSGKTAAFLLPILAHMMRDGITASRFKELQEPECIIVAPTRELINQIYLEARKFSFGT 377
Query: 326 GIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMF 385
+R +YGG +++ GC I+ ATPGRL+D++ + + + +V YLVLDEADRM
Sbjct: 378 CVRAVVIYGGTQFGHSIRQIVQGCNILCATPGRLMDIIGKEKIGLKQVKYLVLDEADRML 437
Query: 386 DLGFEPQIRSIVG----QIRPDRQTLLFSATMPRKVEKLAREIL-SDPVRVTVGEVGMAN 440
D+GF P+++ ++ + RQTLLFSAT P ++++LA E L S+ + V VG+VG A
Sbjct: 438 DMGFGPEMKKLISCPGMPSKEQRQTLLFSATFPEEIQRLAGEFLKSNYLFVAVGQVGGAC 497
Query: 441 EDITQ-VVHVIPSDAEKLPWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAA 499
D+ Q ++ V P ++ L+E L I D +VF K D I + L Q+ +
Sbjct: 498 RDVQQSILQVGPVFKKRK--LVEILRN-IGDERPMVFVETKKKADFIATFLCQEKISTTS 554
Query: 500 LHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIG 559
+HGD++Q R + L F+ G VL+AT VAARGLDI++++ V+NF++ +D +VHRIG
Sbjct: 555 IHGDREQREREQALGDFRCGKCPVLVATSVAARGLDIENVQHVINFNLPSTIDEYVHRIG 614
Query: 560 RTGRAGDKDGTAYTLV-TQKEARFAGELVNSLIAAGQNVSMELMDLA 605
RTGR G+ G A + T+ + A LV L A Q+V L ++A
Sbjct: 615 RTGRCGNT-GRAISFFDTESDNHLAQPLVKVLSDAQQDVPAWLEEIA 660
>UNIPROTKB|Q64060 [details] [associations]
symbol:Ddx4 "Probable ATP-dependent RNA helicase DDX4"
species:10116 "Rattus norvegicus" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 RGD:1308793 GO:GO:0007275 GO:GO:0005524 GO:GO:0005634
GO:GO:0048471 GO:GO:0032880 GO:GO:0007283 GO:GO:0003676
GO:GO:0030317 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0071546 GO:GO:0033391 GO:GO:0007141 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOVERGEN:HBG015893 CTD:54514 KO:K13982 OrthoDB:EOG4W6NVF
GO:GO:0071547 GO:GO:0000237 EMBL:S75275 IPI:IPI00208943 PIR:JC2534
RefSeq:NP_001071115.1 UniGene:Rn.198577 ProteinModelPortal:Q64060
SMR:Q64060 STRING:Q64060 PRIDE:Q64060 GeneID:310090 KEGG:rno:310090
NextBio:661610 Genevestigator:Q64060 Uniprot:Q64060
Length = 713
Score = 719 (258.2 bits), Expect = 4.8e-71, P = 4.8e-71
Identities = 163/407 (40%), Positives = 248/407 (60%)
Query: 210 SLAIRVSGFDVPRPVKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIA 269
++ + VSG D P + TFE+ L + I+K GY K T +Q ++PI+L+GRD++ A
Sbjct: 258 TILVEVSGHDAPPAILTFEEANLCQTLNNNIAKAGYTKLTPVQKYSIPIVLAGRDLMACA 317
Query: 270 KTGSGKTAAFVLPMIVHIMDQ----PELQKEEGPIGVICAPTRELAHQIYLETKKFAKSH 325
+TGSGKTAAF+LP++ H+M ++ + P +I APTREL +QIYLE +KF+
Sbjct: 318 QTGSGKTAAFLLPILAHMMRDGITASRFKELQEPECIIVAPTRELINQIYLEARKFSFGT 377
Query: 326 GIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMF 385
+R +YGG +++ GC I+ ATPGRL+D++ + + + +V YLVLDEADRM
Sbjct: 378 CVRAVVIYGGTQFGHSIRQIVQGCNILCATPGRLMDIIGKEKIGLKQVKYLVLDEADRML 437
Query: 386 DLGFEPQIRSIVG----QIRPDRQTLLFSATMPRKVEKLAREIL-SDPVRVTVGEVGMAN 440
D+GF P+++ ++ + RQTLLFSAT P ++++LA E L S+ + V VG+VG A
Sbjct: 438 DMGFGPEMKKLISCPGMPSKEQRQTLLFSATFPEEIQRLAGEFLKSNYLFVAVGQVGGAC 497
Query: 441 EDITQ-VVHVIPSDAEKLPWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAA 499
D+ Q ++ V P ++ L+E L I D +VF K D I + L Q+ +
Sbjct: 498 RDVQQSILQVGPVFKKRK--LVEILRN-IGDERPMVFVETKKKADFIATFLCQEKISTTS 554
Query: 500 LHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIG 559
+HGD++Q R + L F+ G VL+AT VAARGLDI++++ V+NF++ +D +VHRIG
Sbjct: 555 IHGDREQREREQALGDFRCGKCPVLVATSVAARGLDIENVQHVINFNLPSTIDEYVHRIG 614
Query: 560 RTGRAGDKDGTAYTLV-TQKEARFAGELVNSLIAAGQNVSMELMDLA 605
RTGR G+ G A + T+ + A LV L A Q+V L ++A
Sbjct: 615 RTGRCGNT-GRAISFFDTESDNHLAQPLVKVLSDAQQDVPAWLEEIA 660
>UNIPROTKB|F1MYC6 [details] [associations]
symbol:DDX4 "Probable ATP-dependent RNA helicase DDX4"
species:9913 "Bos taurus" [GO:0048471 "perinuclear region of
cytoplasm" evidence=IEA] [GO:0033391 "chromatoid body"
evidence=IEA] [GO:0032880 "regulation of protein localization"
evidence=IEA] [GO:0030317 "sperm motility" evidence=IEA]
[GO:0007283 "spermatogenesis" evidence=IEA] [GO:0007141 "male
meiosis I" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0000237 "leptotene" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0048471
GO:GO:0032880 GO:GO:0007283 GO:GO:0003676 GO:GO:0030317
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0033391
GO:GO:0007141 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 IPI:IPI00689085 UniGene:Bt.35994
OMA:RDAGESN GO:GO:0000237 EMBL:DAAA02050339 EMBL:DAAA02050337
EMBL:DAAA02050338 EMBL:JX437185 Ensembl:ENSBTAT00000011682
Uniprot:F1MYC6
Length = 729
Score = 718 (257.8 bits), Expect = 6.1e-71, P = 6.1e-71
Identities = 162/408 (39%), Positives = 245/408 (60%)
Query: 210 SLAIRVSGFDVPRPVKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIA 269
++ + VSG D P + TFE+ L + I+K GY K T +Q ++PII GRD++ A
Sbjct: 275 TILVEVSGHDPPPAILTFEEANLCQTLNNNIAKAGYTKLTPVQKYSIPIIQGGRDLMACA 334
Query: 270 KTGSGKTAAFVLPMIVHIMDQ----PELQKEEGPIGVICAPTRELAHQIYLETKKFAKSH 325
+TGSGKTAAF+LP++ H+M ++ + P +I APTREL +QIYLE +KF+
Sbjct: 335 QTGSGKTAAFLLPILAHMMRDGITASRFKELQEPECIIVAPTRELINQIYLEARKFSFGT 394
Query: 326 GIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMF 385
+R +YGG +++ GC I+ ATPGRL+D++ + + + +V YLVLDEADRM
Sbjct: 395 CVRAVVIYGGTQLGHSIRQIVQGCNILCATPGRLMDVIGKEKIGLRQVKYLVLDEADRML 454
Query: 386 DLGFEPQIRSIVG----QIRPDRQTLLFSATMPRKVEKLAREIL-SDPVRVTVGEVGMAN 440
D+GF P+++ ++ + RQTL+FSAT P ++++LA E L S+ + V VG+VG A
Sbjct: 455 DMGFGPEMKKLISCPGMPSKEQRQTLMFSATFPEEIQRLAGEFLKSNYLFVAVGQVGGAC 514
Query: 441 EDITQVVHVIP--SDAEKLPWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAA 498
D+ Q + + S EKL +L I D +VF K D I + L Q+
Sbjct: 515 RDVQQTILQVGQYSKREKLVEILRN----IGDERTMVFVETKKKADFIATFLCQEKISTT 570
Query: 499 ALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRI 558
++HGD++Q R + L F+ G VL+AT VAARGLDI++++ V+NFD+ +D +VHRI
Sbjct: 571 SIHGDREQREREQALGDFRCGKCPVLVATSVAARGLDIENVQHVINFDLPSTIDEYVHRI 630
Query: 559 GRTGRAGDKDGTAYTLVT-QKEARFAGELVNSLIAAGQNVSMELMDLA 605
GRTGR G+ G A + + +++ A LV L A Q+V L ++A
Sbjct: 631 GRTGRCGNT-GRAISFFDLESDSQLAQPLVKVLSDAQQDVPAWLEEIA 677
>UNIPROTKB|Q5W5U4 [details] [associations]
symbol:DDX4 "Probable ATP-dependent RNA helicase DDX4"
species:9913 "Bos taurus" [GO:0033391 "chromatoid body"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=ISS] [GO:0071547
"piP-body" evidence=ISS] [GO:0071546 "pi-body" evidence=ISS]
[GO:0048471 "perinuclear region of cytoplasm" evidence=IEA]
[GO:0007275 "multicellular organismal development" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0007275 GO:GO:0005524
GO:GO:0048471 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0071546 GO:GO:0033391 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268804 HOVERGEN:HBG015893 EMBL:AF541971
IPI:IPI00689085 RefSeq:NP_001007820.1 UniGene:Bt.35994
ProteinModelPortal:Q5W5U4 SMR:Q5W5U4 STRING:Q5W5U4 PRIDE:Q5W5U4
GeneID:493725 KEGG:bta:493725 CTD:54514 InParanoid:Q5W5U4 KO:K13982
OrthoDB:EOG4W6NVF NextBio:20865468 GO:GO:0071547 Uniprot:Q5W5U4
Length = 729
Score = 718 (257.8 bits), Expect = 6.1e-71, P = 6.1e-71
Identities = 162/408 (39%), Positives = 245/408 (60%)
Query: 210 SLAIRVSGFDVPRPVKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIA 269
++ + VSG D P + TFE+ L + I+K GY K T +Q ++PII GRD++ A
Sbjct: 275 TILVEVSGHDPPPAILTFEEANLCQTLNNNIAKAGYTKLTPVQKYSIPIIQGGRDLMACA 334
Query: 270 KTGSGKTAAFVLPMIVHIMDQ----PELQKEEGPIGVICAPTRELAHQIYLETKKFAKSH 325
+TGSGKTAAF+LP++ H+M ++ + P +I APTREL +QIYLE +KF+
Sbjct: 335 QTGSGKTAAFLLPILAHMMRDGITASRFKELQEPECIIVAPTRELINQIYLEARKFSFGT 394
Query: 326 GIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMF 385
+R +YGG +++ GC I+ ATPGRL+D++ + + + +V YLVLDEADRM
Sbjct: 395 CVRAVVIYGGTQLGHSIRQIVQGCNILCATPGRLMDVIGKEKIGLRQVKYLVLDEADRML 454
Query: 386 DLGFEPQIRSIVG----QIRPDRQTLLFSATMPRKVEKLAREIL-SDPVRVTVGEVGMAN 440
D+GF P+++ ++ + RQTL+FSAT P ++++LA E L S+ + V VG+VG A
Sbjct: 455 DMGFGPEMKKLISCPGMPSKEQRQTLMFSATFPEEIQRLAGEFLKSNYLFVAVGQVGGAC 514
Query: 441 EDITQVVHVIP--SDAEKLPWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAA 498
D+ Q + + S EKL +L I D +VF K D I + L Q+
Sbjct: 515 RDVQQTILQVGQYSKREKLVEILRN----IGDERTMVFVETKKKADFIATFLCQEKISTT 570
Query: 499 ALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRI 558
++HGD++Q R + L F+ G VL+AT VAARGLDI++++ V+NFD+ +D +VHRI
Sbjct: 571 SIHGDREQREREQALGDFRCGKCPVLVATSVAARGLDIENVQHVINFDLPSTIDEYVHRI 630
Query: 559 GRTGRAGDKDGTAYTLVT-QKEARFAGELVNSLIAAGQNVSMELMDLA 605
GRTGR G+ G A + + +++ A LV L A Q+V L ++A
Sbjct: 631 GRTGRCGNT-GRAISFFDLESDSQLAQPLVKVLSDAQQDVPAWLEEIA 677
>UNIPROTKB|Q90ZF6 [details] [associations]
symbol:olvas "VASA" species:8090 "Oryzias latipes"
[GO:0043186 "P granule" evidence=IDA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
GO:GO:0043186 HSSP:Q58083 HOVERGEN:HBG015893 EMBL:AB063484
RefSeq:NP_001098146.1 UniGene:Ola.181 ProteinModelPortal:Q90ZF6
SMR:Q90ZF6 GeneID:100049226 CTD:100049226 Uniprot:Q90ZF6
Length = 617
Score = 716 (257.1 bits), Expect = 9.9e-71, P = 9.9e-71
Identities = 187/483 (38%), Positives = 270/483 (55%)
Query: 134 GYDS-DEEVYAAAKAVDAGMLDYDSDDNPVVVEKKKIEPIPALDHSLIDYEPFNKDFYQD 192
GY DE+V+AA G + D+ D P E+ K+ IP SL + E + F
Sbjct: 107 GYRGRDEDVFAAGDG--RGAENSDAAD-P---ERPKVTYIPP---SLPEDE--DSIFSHY 155
Query: 193 SASISGMSEQDVMEYKKSLAIRVSGFDVPRPVKTFEDCGFSTQLMHAISKQGYEKPTSIQ 252
I+ D++ + VSG ++P + TFE+ L + IS+ GY KPT +Q
Sbjct: 156 KMGINFDKYDDIL-------VDVSGTNLPAAIMTFEEAKLCESLENNISRSGYVKPTPVQ 208
Query: 253 CQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQ----PELQKEEGPIGVICAPTR 308
LPII +GRD++ A+TGSGKTAAF+LP++ +M + + P VI APTR
Sbjct: 209 KYGLPIISAGRDLMACAQTGSGKTAAFLLPILQQLMADGVAASRFSEIQEPEAVIVAPTR 268
Query: 309 ELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKAL 368
EL +QIY E +KF+ +R VYGG++ Q +E++ GC ++ TPGRL+DM+ +
Sbjct: 269 ELINQIYQEARKFSFGTCVRPVVVYGGVNTGYQMREIEKGCNVLCGTPGRLLDMIGRGKV 328
Query: 369 TMSRVTYLVLDEADRMFDLGFEPQIRSIVGQ----IRPDRQTLLFSATMPRKVEKLAREI 424
+S+V +LVLDEADRM D+GFEP +R +VG + +RQTL+FSAT P +++LA +
Sbjct: 329 GLSKVRHLVLDEADRMLDMGFEPDMRRLVGSPGMPSKEERQTLMFSATFPEDIQRLAADF 388
Query: 425 LS-DPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEKLPGMIDDGDVLVFASKKTTV 483
L D + V VG VG A D+ Q + + K LL+ L I +VF K
Sbjct: 389 LKVDYLFVAVGVVGGACTDVEQTFLQV-TKFNKREQLLDLLR-TIGSERTMVFVETKRQA 446
Query: 484 DEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVV 543
D I + L Q+ ++HGD++Q R + L F+SG VL+AT VA+RGLDI ++ VV
Sbjct: 447 DFIAAFLCQEKVPTTSIHGDREQREREKALADFRSGKCPVLVATSVASRGLDIPDVQHVV 506
Query: 544 NFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQK-EARFAGELVNSLIAAGQNVSMELM 602
NFD+ +D +VHRIGRTGR G+ G A + +++ A LV L A Q V L
Sbjct: 507 NFDLPNTIDDYVHRIGRTGRCGNT-GRAVSFYDPDVDSQLARSLVGILAKAQQEVPSWLE 565
Query: 603 DLA 605
+ A
Sbjct: 566 ESA 568
>POMBASE|SPCC63.11 [details] [associations]
symbol:prp28 "U5 snRNP-associated protein Prp28
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0000354
"cis assembly of pre-catalytic spliceosome" evidence=ISS]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005681 "spliceosomal complex" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 PomBase:SPCC63.11
GO:GO:0005524 GO:GO:0005737 EMBL:CU329672 GenomeReviews:CU329672_GR
GO:GO:0005681 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0000354 KO:K12858 HOGENOM:HOG000268796
OMA:PIRNWKE OrthoDB:EOG4KPXK0 PIR:T41512 RefSeq:NP_587984.1
ProteinModelPortal:Q9Y7T7 STRING:Q9Y7T7 EnsemblFungi:SPCC63.11.1
GeneID:2538728 KEGG:spo:SPCC63.11 NextBio:20799913 Uniprot:Q9Y7T7
Length = 662
Score = 449 (163.1 bits), Expect = 1.1e-70, Sum P(2) = 1.1e-70
Identities = 86/208 (41%), Positives = 134/208 (64%)
Query: 196 ISGMSEQDVMEYKKSLAIRVSGFDVPRPVKTFEDCGFSTQLMHAISKQGYEKPTSIQCQA 255
+ M +D K+ I + G D+P P++ +E+ G ++++ + K Y++P+SIQ A
Sbjct: 220 LEAMKPRDWRILKEDYNISIKGDDLPNPLRNWEEAGLPSEMLKVLKKVNYKEPSSIQRAA 279
Query: 256 LPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEE---GPIGVICAPTRELAH 312
+P++L +D+IGIA+TGSGKTAAF++P+I+ I P L + GP V+ APTRELA
Sbjct: 280 IPVLLQRKDLIGIAETGSGKTAAFIIPLIIAISKLPPLTESNMHLGPYAVVLAPTRELAQ 339
Query: 313 QIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSR 372
QI +E KFA+ G R +V GG + +Q ++ G IV+ATPGRL+D L+ + +S+
Sbjct: 340 QIQVEGNKFAEPLGFRCVSVVGGHAFEEQSFQMSQGAHIVVATPGRLLDCLERRLFVLSQ 399
Query: 373 VTYLVLDEADRMFDLGFEPQIRSIVGQI 400
TY+V+DEADRM D+GFE + I+ +
Sbjct: 400 CTYVVMDEADRMLDMGFEDDVNKILSSL 427
Score = 327 (120.2 bits), Expect = 1.1e-70, Sum P(2) = 1.1e-70
Identities = 65/172 (37%), Positives = 107/172 (62%)
Query: 404 RQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEK 463
RQT++FSAT+P +V LA+ L +PV +T+G +G A + + Q V +I D++K + E
Sbjct: 450 RQTIMFSATLPPRVANLAKSYLIEPVMLTIGNIGQAVDRVEQRVEMISDDSKKWRRVEEI 509
Query: 464 LPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHV 523
L +++F + K ++ I QL G+ A LHG K Q R +++ ++ +
Sbjct: 510 LESNRFSPPIIIFVNLKRNIEAIAKQLNAIGWHAVTLHGSKSQEQRERAIEQLRNKTADI 569
Query: 524 LIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLV 575
L+ATD+A RG+DI ++ V+N+++A+ ++ + HRIGRTGRAG K GTA T +
Sbjct: 570 LVATDIAGRGIDIPNVSLVLNYNMAKSIEDYTHRIGRTGRAG-KSGTAITFL 620
>UNIPROTKB|B4DLW8 [details] [associations]
symbol:DDX5 "Probable ATP-dependent RNA helicase DDX5"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003712 "transcription cofactor activity"
evidence=IEA] [GO:0003724 "RNA helicase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012587 Pfam:PF00270 Pfam:PF00271
Pfam:PF08061 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0003676 GO:GO:0003712
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
EMBL:AC009994 GO:GO:0003724 HOVERGEN:HBG015893 UniGene:Hs.279806
HGNC:HGNC:2746 ChiTaRS:DDX5 EMBL:AK297192 IPI:IPI00798375
STRING:B4DLW8 Ensembl:ENST00000450599 UCSC:uc010wqa.1
Uniprot:B4DLW8
Length = 535
Score = 657 (236.3 bits), Expect = 2.6e-69, Sum P(2) = 2.6e-69
Identities = 138/321 (42%), Positives = 202/321 (62%)
Query: 297 EGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATP 356
+GPI ++ APTRELA Q+ ++ ++ ++ + +YGG K Q ++L+ G EI IATP
Sbjct: 87 DGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATP 146
Query: 357 GRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMPRK 416
GRLID L+ + R TYLVLDEADRM D+GFEPQIR IV QIRPDRQTL++SAT P++
Sbjct: 147 GRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKE 206
Query: 417 VEKLAREILSDPVRVTVGEVGM-ANEDITQVV---HVIPSDAEKLPWLLEKLPGMIDDGD 472
V +LA + L D + + +G + + AN +I Q+V H + D EKL L+E++ +
Sbjct: 207 VRQLAEDFLKDYIHINIGALELSANHNILQIVDVCHDVEKD-EKLIRLMEEIMSE-KENK 264
Query: 473 VLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAAR 532
+VF K DE+ ++ + G+ A +HGDK Q R +L +FK G +LIATDVA+R
Sbjct: 265 TIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIATDVASR 324
Query: 533 GLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELVNSLIA 592
GLD++ +K V+N+D + ++HRIGRT R+ K GTAYT T + +L++ L
Sbjct: 325 GLDVEDVKFVINYDYPNSSEDYIHRIGRTARS-TKTGTAYTFFTPNNIKQVSDLISVLRE 383
Query: 593 AGQNVSMELMDLAMKDGRFRS 613
A Q ++ +L+ L G RS
Sbjct: 384 ANQAINPKLLQLVEDRGSGRS 404
Score = 64 (27.6 bits), Expect = 2.6e-69, Sum P(2) = 2.6e-69
Identities = 16/43 (37%), Positives = 25/43 (58%)
Query: 180 IDYEP-FNKDFYQDSASISGMSEQDVMEYKKSLAIRVSGFDVP 221
+D P F K+FYQ+ ++ + Q+V Y++S I V G D P
Sbjct: 48 LDELPKFEKNFYQEHPDLARRTAQEVETYRRSKEITVRG-DGP 89
>UNIPROTKB|F1N991 [details] [associations]
symbol:DDX4 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0000237 "leptotene"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0007141 "male
meiosis I" evidence=IEA] [GO:0007283 "spermatogenesis"
evidence=IEA] [GO:0030317 "sperm motility" evidence=IEA]
[GO:0032880 "regulation of protein localization" evidence=IEA]
[GO:0033391 "chromatoid body" evidence=IEA] [GO:0048471
"perinuclear region of cytoplasm" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0048471 GO:GO:0032880 GO:GO:0003676
GO:GO:0030317 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0033391 GO:GO:0007141 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00620000087942 GO:GO:0000237
OMA:GINFDKF EMBL:AADN02054551 EMBL:AADN02054552 EMBL:AADN02054553
IPI:IPI00819436 ProteinModelPortal:F1N991
Ensembl:ENSGALT00000023724 Uniprot:F1N991
Length = 568
Score = 702 (252.2 bits), Expect = 3.0e-69, P = 3.0e-69
Identities = 157/429 (36%), Positives = 246/429 (57%)
Query: 191 QDSASISGMSEQDV-MEYKKSLAIRVSGFDVPRPVKTFEDCGFSTQLMHAISKQGYEKPT 249
+D SI + + + A+ +SG D P P+ FE+ F+ L ISK GY K T
Sbjct: 132 EDEQSIFACYQSGINFDKYDECAVEMSGLDPPAPLLAFEEANFAQTLRKNISKTGYSKLT 191
Query: 250 SIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQ----PELQKEEGPIGVICA 305
+Q ++P+I +GRD++ A+TGSGKTAAF+LP++ +M QK++ P +I A
Sbjct: 192 PVQKHSIPVIQAGRDLMSCAQTGSGKTAAFLLPIVDRMMKDGVTASAFQKQQEPQCIIVA 251
Query: 306 PTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKM 365
PTREL +QI+LE +KF IR +YGG +++ GC I+ ATPGRL+D+++
Sbjct: 252 PTRELINQIFLEARKFVYGTCIRPVVIYGGTQTGHSIRQIMQGCNILCATPGRLLDIIEK 311
Query: 366 KALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIR-PD---RQTLLFSATMPRKVEKLA 421
+++ V YLVLDEADRM D+GF ++ ++ P RQTL+FSAT P +V++LA
Sbjct: 312 GKISLVEVKYLVLDEADRMLDMGFGLDMKKLISYPEMPSKDRRQTLMFSATFPEEVQRLA 371
Query: 422 REIL-SDPVRVTVGEVGMANEDITQVVHVIP--SDAEKLPWLLEKLPGMIDDGDVLVFAS 478
E L +D + + +G A D+ Q + +P S +KL +L+ G +VF
Sbjct: 372 GEFLKTDYIFLVIGNTCGACSDVQQNILQVPRLSKRDKLIEILQSTGGE----RTMVFVD 427
Query: 479 KKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKS 538
K D + + L Q+ + ++HGD++Q R L+ F+SG +L+AT VA+RGLDI++
Sbjct: 428 TKKKADYLAAFLCQENLPSTSIHGDREQREREIALRDFRSGKCQILVATSVASRGLDIEN 487
Query: 539 IKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELVNSLIAAGQNVS 598
++ V+NFD+ ++ +VHRIGRTGR G+ Q + L+ L A Q V
Sbjct: 488 VQHVINFDLPNTIEDYVHRIGRTGRCGNTGKAVSFFDDQSDGHLVQSLLKVLSEAQQEVP 547
Query: 599 MELMDLAMK 607
+ L ++A++
Sbjct: 548 VWLEEMAVQ 556
>UNIPROTKB|G3X7G8 [details] [associations]
symbol:DDX59 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005622 "intracellular" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 GO:GO:0005622 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR007529 Pfam:PF04438 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00610000086076
CTD:83479 OMA:VTRPIID EMBL:DAAA02043967 EMBL:DAAA02043968
RefSeq:NP_001179318.1 UniGene:Bt.41740 Ensembl:ENSBTAT00000027398
GeneID:514901 KEGG:bta:514901 NextBio:20871562 Uniprot:G3X7G8
Length = 620
Score = 693 (249.0 bits), Expect = 2.7e-68, P = 2.7e-68
Identities = 156/418 (37%), Positives = 236/418 (56%)
Query: 190 YQDSASISGMSEQDVMEYKKSLAIRVSGFDVPRPVKTFEDCGFSTQLMHAISKQGYEKPT 249
Y + A +S + E + ++ L I V G VPRP+ FE CGF L + GYE PT
Sbjct: 169 YTEHAFVSHLREDQIENLRRQLGITVRGRGVPRPIVDFEHCGFPEALNRNLKASGYEVPT 228
Query: 250 SIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRE 309
IQ Q +P+ L GRD++ A TGSGKTAAF+LP+I+ + Q + P G++ PTRE
Sbjct: 229 PIQMQMIPVGLLGRDVLASADTGSGKTAAFLLPVILRALSQ-----SKSPSGLVLTPTRE 283
Query: 310 LAHQIYLETKKFAKSHG-IRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKAL 368
LA QI + K+ +R + + GG+ Q L+ +++IATPGRL+D++K +++
Sbjct: 284 LAIQIERQAKELMSGLPCLRTALLVGGLPAPPQRHRLRQRIQVIIATPGRLLDIIKQRSV 343
Query: 369 TMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLAREILSDP 428
+ + +V+DEAD M +GF+ Q+ ++ Q+ D QT+L SAT+P VE+LA ++L DP
Sbjct: 344 ELGSIKIVVVDEADTMLKMGFQQQVLDVLEQLPHDCQTVLASATIPASVEQLACQLLRDP 403
Query: 429 VRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEKLPGM-IDDGDVLVFASKKTTVDEIE 487
V +T GE + + Q+V + A+K L E L + VLVF K D +
Sbjct: 404 VAITAGERNLPCPSVRQIVLWVEEPAKKKK-LFEILNDKKLFKPPVLVFVDCKLGADLL- 461
Query: 488 SQLAQK--GFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVNF 545
S+ QK G K+ ++H DK Q R IL+ G Y V+++T V RGLD+ +K VVNF
Sbjct: 462 SEAVQKITGLKSTSVHSDKTQMERKNILKGLLEGDYDVVVSTGVLGRGLDLVGVKLVVNF 521
Query: 546 DIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELVNSLIAAGQNVSMELMD 603
D+ MD +VH+IGR GR G + GTA T + R ++ + G + +L++
Sbjct: 522 DMPSSMDEYVHQIGRVGRLG-QHGTAITFINNNSKRLFWDIAKRVKPTGSLLPPQLLN 578
>UNIPROTKB|F1NL04 [details] [associations]
symbol:DDX4 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0000237 "leptotene" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0007141 "male meiosis I"
evidence=IEA] [GO:0007283 "spermatogenesis" evidence=IEA]
[GO:0030317 "sperm motility" evidence=IEA] [GO:0032880 "regulation
of protein localization" evidence=IEA] [GO:0033391 "chromatoid
body" evidence=IEA] [GO:0048471 "perinuclear region of cytoplasm"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0048471 GO:GO:0032880 GO:GO:0003676 GO:GO:0030317
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0033391
GO:GO:0007141 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 GO:GO:0000237 EMBL:AADN02054551
EMBL:AADN02054552 EMBL:AADN02054553 IPI:IPI00578446
Ensembl:ENSGALT00000038830 Uniprot:F1NL04
Length = 542
Score = 692 (248.7 bits), Expect = 3.5e-68, P = 3.5e-68
Identities = 156/413 (37%), Positives = 241/413 (58%)
Query: 191 QDSASISGMSEQDV-MEYKKSLAIRVSGFDVPRPVKTFEDCGFSTQLMHAISKQGYEKPT 249
+D SI + + + A+ +SG D P P+ FE+ F+ L ISK GY K T
Sbjct: 132 EDEQSIFACYQSGINFDKYDECAVEMSGLDPPAPLLAFEEANFAQTLRKNISKTGYSKLT 191
Query: 250 SIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQ----PELQKEEGPIGVICA 305
+Q ++P+I +GRD++ A+TGSGKTAAF+LP++ +M QK++ P +I A
Sbjct: 192 PVQKHSIPVIQAGRDLMSCAQTGSGKTAAFLLPIVDRMMKDGVTASAFQKQQEPQCIIVA 251
Query: 306 PTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKM 365
PTREL +QI+LE +KF IR +YGG +++ GC I+ ATPGRL+D+++
Sbjct: 252 PTRELINQIFLEARKFVYGTCIRPVVIYGGTQTGHSIRQIMQGCNILCATPGRLLDIIEK 311
Query: 366 KALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIR-PD---RQTLLFSATMPRKVEKLA 421
+++ V YLVLDEADRM D+GF ++ ++ P RQTL+FSAT P +V++LA
Sbjct: 312 GKISLVEVKYLVLDEADRMLDMGFGLDMKKLISYPEMPSKDRRQTLMFSATFPEEVQRLA 371
Query: 422 REIL-SDPVRVTVGEVGMANEDITQVVHVIP--SDAEKLPWLLEKLPGMIDDGDVLVFAS 478
E L +D + + +G A D+ Q + +P S +KL +L+ G +VF
Sbjct: 372 GEFLKTDYIFLVIGNTCGACSDVQQNILQVPRLSKRDKLIEILQSTGGE----RTMVFVD 427
Query: 479 KKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKS 538
K D + + L Q+ + ++HGD++Q R L+ F+SG +L+AT VA+RGLDI++
Sbjct: 428 TKKKADYLAAFLCQENLPSTSIHGDREQREREIALRDFRSGKCQILVATSVASRGLDIEN 487
Query: 539 IKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELVNSLI 591
++ V+NFD+ ++ +VHRIGRTGR G+ G A + + G LV SL+
Sbjct: 488 VQHVINFDLPNTIEDYVHRIGRTGRCGNT-GKAVSFFDDQSD---GHLVQSLL 536
>WB|WBGene00013214 [details] [associations]
symbol:Y54G11A.3 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0008152 "metabolic process" evidence=IEA]
[GO:0016491 "oxidoreductase activity" evidence=IEA] [GO:0055114
"oxidation-reduction process" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 EMBL:AL034488 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268804 GeneTree:ENSGT00660000095174
HSSP:P10081 PIR:T27176 RefSeq:NP_496973.1 ProteinModelPortal:Q9XVZ6
SMR:Q9XVZ6 STRING:Q9XVZ6 PaxDb:Q9XVZ6 EnsemblMetazoa:Y54G11A.3
GeneID:175083 KEGG:cel:CELE_Y54G11A.3 UCSC:Y54G11A.3 CTD:175083
WormBase:Y54G11A.3 InParanoid:Q9XVZ6 OMA:NGFEKPS NextBio:886680
Uniprot:Q9XVZ6
Length = 504
Score = 689 (247.6 bits), Expect = 7.2e-68, P = 7.2e-68
Identities = 161/437 (36%), Positives = 243/437 (55%)
Query: 183 EPFNKDFYQDSASISGMSEQDVME-YKKSLAIRVSGF------DVPRPVKTFEDC-GFST 234
+P +D Y+ +S + + E Y ++V F +P PV +FE G +
Sbjct: 34 KPIVRDLYKIPNEQKNLSPEQLQELYTNGGVMKVYPFREESTVKIPPPVNSFEQAFGSNA 93
Query: 235 QLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHI---MDQP 291
+M I K G+EKP+ IQ Q P++LSG+D IG+++TGSGKT AF+LP ++HI + Q
Sbjct: 94 SIMGEIRKNGFEKPSPIQSQMWPLLLSGQDCIGVSQTGSGKTLAFLLPALLHIDAQLAQY 153
Query: 292 ELQKEE---GPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAG 348
E EE P ++ +PTRELA QI E KK++ + G + +YGG S+ +Q + + G
Sbjct: 154 EKNDEEQKPSPFVLVLSPTRELAQQIEGEVKKYSYN-GYKSVCLYGGGSRPEQVEACRGG 212
Query: 349 CEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLL 408
EIVIATPGRL D+ ++++ VTY+VLDEADRM D+GFE IR I+ +IRPDR L
Sbjct: 213 VEIVIATPGRLTDLSNDGVISLASVTYVVLDEADRMLDMGFEVAIRRILFEIRPDRLVAL 272
Query: 409 FSATMPRKVEKLAREILSDPVRVTVGEVGMAN-EDITQVVHVIPSDAE--KLPWLLEKLP 465
SAT P V KL + + V G + + + + +TQ +P D+ ++ ++ L
Sbjct: 273 TSATWPEGVRKLTDKYTKEAVMAVNGSLDLTSCKSVTQFFEFVPHDSRFLRVCEIVNFLT 332
Query: 466 GMIDDG-DVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVL 524
+++F K D + S KG + LHG + Q+ R L +SG +L
Sbjct: 333 AAHGQNYKMIIFVKSKVMADHLSSDFCMKGINSQGLHGGRSQSDREMSLNMLRSGEVQIL 392
Query: 525 IATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAG 584
+ATD+A+RG+D+ I V+N+D D++ +VHR+GRTGRAG K L + F G
Sbjct: 393 VATDLASRGIDVPDITHVLNYDFPMDIEEYVHRVGRTGRAGRKGEAMSFLWWNDRSNFEG 452
Query: 585 ELVNSLIAAGQNVSMEL 601
L+ L + Q V +L
Sbjct: 453 -LIQILEKSEQEVPDQL 468
>UNIPROTKB|Q9KLH6 [details] [associations]
symbol:VC_A0768 "ATP-dependent RNA helicase, DEAD box
family" species:243277 "Vibrio cholerae O1 biovar El Tor str.
N16961" [GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
[GO:0008152 "metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE003853 GenomeReviews:AE003853_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 KO:K11927
OMA:LECVINY PIR:H82418 RefSeq:NP_233154.1 ProteinModelPortal:Q9KLH6
DNASU:2612338 GeneID:2612338 KEGG:vch:VCA0768 PATRIC:20086092
ProtClustDB:CLSK869757 Uniprot:Q9KLH6
Length = 422
Score = 688 (247.2 bits), Expect = 9.2e-68, P = 9.2e-68
Identities = 149/356 (41%), Positives = 219/356 (61%)
Query: 226 TFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIV 285
TF G ++L++ +S+ G PT IQ QA+P +L G+D++ A+TG+GKTAAF LP+I
Sbjct: 7 TFSQLGLDSRLLNTLSELGIANPTPIQQQAIPHVLQGKDVLAGAQTGTGKTAAFGLPLIQ 66
Query: 286 HIMDQP-ELQKEEGPI-GVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFK 343
++QP + + I ++ PTRELA Q+ + +AK +++ AVYGG S Q
Sbjct: 67 RFIEQPWQREANSKEIRALVLVPTRELAQQVLDSLQAYAKGTELKIVAVYGGTSMKVQLN 126
Query: 344 ELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPD 403
L+ G +I+IATPGRL+D +K+L + +V LVLDEADRM D+GF P ++ ++ ++ P
Sbjct: 127 HLRGGVDILIATPGRLLDHAHVKSLFLGKVEVLVLDEADRMLDMGFMPDLQRVLRRLSPL 186
Query: 404 RQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEK 463
RQTL FSAT K++ +A I+ DP+ V V E + Q+V+ P D ++ LL
Sbjct: 187 RQTLFFSATFDSKIKAVAYRIMRDPIEVQVTPSNSTAETVQQMVY--PVDKKRKRELLSY 244
Query: 464 LPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHV 523
L G + VLVF + D + +L G KA +++GDK Q +R + L FK+G
Sbjct: 245 LIGSKNWQQVLVFTKTRQGSDALAEELKLDGIKAVSINGDKSQGARQKALDDFKAGKVRA 304
Query: 524 LIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKE 579
LIATDVAARGLDI ++ VVN+D+ + +VHRIGRTGRAG G A +L++ E
Sbjct: 305 LIATDVAARGLDIAQLEQVVNYDMPFKAEDYVHRIGRTGRAG-LAGLAVSLLSHDE 359
>TIGR_CMR|VC_A0768 [details] [associations]
symbol:VC_A0768 "ATP-dependent RNA helicase, DEAD/DEAH box
family" species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008152
"metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE003853 GenomeReviews:AE003853_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 KO:K11927
OMA:LECVINY PIR:H82418 RefSeq:NP_233154.1 ProteinModelPortal:Q9KLH6
DNASU:2612338 GeneID:2612338 KEGG:vch:VCA0768 PATRIC:20086092
ProtClustDB:CLSK869757 Uniprot:Q9KLH6
Length = 422
Score = 688 (247.2 bits), Expect = 9.2e-68, P = 9.2e-68
Identities = 149/356 (41%), Positives = 219/356 (61%)
Query: 226 TFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIV 285
TF G ++L++ +S+ G PT IQ QA+P +L G+D++ A+TG+GKTAAF LP+I
Sbjct: 7 TFSQLGLDSRLLNTLSELGIANPTPIQQQAIPHVLQGKDVLAGAQTGTGKTAAFGLPLIQ 66
Query: 286 HIMDQP-ELQKEEGPI-GVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFK 343
++QP + + I ++ PTRELA Q+ + +AK +++ AVYGG S Q
Sbjct: 67 RFIEQPWQREANSKEIRALVLVPTRELAQQVLDSLQAYAKGTELKIVAVYGGTSMKVQLN 126
Query: 344 ELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPD 403
L+ G +I+IATPGRL+D +K+L + +V LVLDEADRM D+GF P ++ ++ ++ P
Sbjct: 127 HLRGGVDILIATPGRLLDHAHVKSLFLGKVEVLVLDEADRMLDMGFMPDLQRVLRRLSPL 186
Query: 404 RQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEK 463
RQTL FSAT K++ +A I+ DP+ V V E + Q+V+ P D ++ LL
Sbjct: 187 RQTLFFSATFDSKIKAVAYRIMRDPIEVQVTPSNSTAETVQQMVY--PVDKKRKRELLSY 244
Query: 464 LPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHV 523
L G + VLVF + D + +L G KA +++GDK Q +R + L FK+G
Sbjct: 245 LIGSKNWQQVLVFTKTRQGSDALAEELKLDGIKAVSINGDKSQGARQKALDDFKAGKVRA 304
Query: 524 LIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKE 579
LIATDVAARGLDI ++ VVN+D+ + +VHRIGRTGRAG G A +L++ E
Sbjct: 305 LIATDVAARGLDIAQLEQVVNYDMPFKAEDYVHRIGRTGRAG-LAGLAVSLLSHDE 359
>UNIPROTKB|P25888 [details] [associations]
symbol:rhlE "ATP-dependent RNA helicase" species:83333
"Escherichia coli K-12" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0042255 "ribosome assembly" evidence=IGI]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=IDA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:U00096 EMBL:AP009048
GenomeReviews:AP009048_GR GenomeReviews:U00096_GR GO:GO:0003723
GO:GO:0005840 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0042255 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 EMBL:L02123 HOGENOM:HOG000268807 EMBL:X56307
PIR:E64816 RefSeq:NP_415318.1 RefSeq:YP_489070.1
ProteinModelPortal:P25888 SMR:P25888 DIP:DIP-10697N IntAct:P25888
MINT:MINT-1313387 PRIDE:P25888 EnsemblBacteria:EBESCT00000003075
EnsemblBacteria:EBESCT00000017437 GeneID:12930968 GeneID:945425
KEGG:ecj:Y75_p0770 KEGG:eco:b0797 PATRIC:32116795 EchoBASE:EB1217
EcoGene:EG11235 KO:K11927 OMA:HLIKQHN ProtClustDB:PRK10590
BioCyc:EcoCyc:EG11235-MONOMER BioCyc:ECOL316407:JW0781-MONOMER
Genevestigator:P25888 Uniprot:P25888
Length = 454
Score = 687 (246.9 bits), Expect = 1.2e-67, P = 1.2e-67
Identities = 145/362 (40%), Positives = 223/362 (61%)
Query: 226 TFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIV 285
+F+ G S ++ A+++QGY +PT IQ QA+P +L GRD++ A+TG+GKTA F LP++
Sbjct: 2 SFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQ 61
Query: 286 HIMDQPELQKEEGPI-GVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKE 344
H++ + K P+ +I PTRELA QI + ++K IR V+GG+S Q +
Sbjct: 62 HLITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMK 121
Query: 345 LKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDR 404
L+ G ++++ATPGRL+D+ A+ + +V LVLDEADRM D+GF IR ++ ++ R
Sbjct: 122 LRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPAKR 181
Query: 405 QTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEKL 464
Q LLFSAT ++ LA ++L +P+ + V A++ +TQ VH + D ++ LL +
Sbjct: 182 QNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASDQVTQHVHFV--DKKRKRELLSHM 239
Query: 465 PGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVL 524
G + VLVF K + + QL + G ++AA+HG+K Q +R L FKSG VL
Sbjct: 240 IGKGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVL 299
Query: 525 IATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAG 584
+ATD+AARGLDI+ + VVN+++ + +VHRIGRTGRA G A +LV E +
Sbjct: 300 VATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAA-ATGEALSLVCVDEHKLLR 358
Query: 585 EL 586
++
Sbjct: 359 DI 360
>UNIPROTKB|B2C6E9 [details] [associations]
symbol:B2C6E9 "VASA" species:9337 "Trichosurus vulpecula"
[GO:0033391 "chromatoid body" evidence=IDA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0033391 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
HOVERGEN:HBG015893 EMBL:EU278597 Uniprot:B2C6E9
Length = 704
Score = 682 (245.1 bits), Expect = 4.0e-67, P = 4.0e-67
Identities = 157/400 (39%), Positives = 234/400 (58%)
Query: 210 SLAIRVSGFDVPRPVKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIA 269
++ + VSG D P + TFE+ L + I+K GY K T +Q +PIIL+GRD++ A
Sbjct: 251 TILVEVSGHDAPPAILTFEETDLCQTLNNDITKAGYTKLTPVQKYGIPIILAGRDLMACA 310
Query: 270 KTGSGKTAAFVLPMIVHIMDQ----PELQKEEGPIGVICAPTRELAHQIYLETKKFAKSH 325
+TGSGKTAAF+LP++ H+M + ++ P +I APTREL +QI+LE +KF+
Sbjct: 311 QTGSGKTAAFLLPILAHMMRDGVTASRFKDQQEPECIIVAPTRELINQIFLEARKFSFGT 370
Query: 326 GIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMF 385
+R +YGG +++ GC I+ ATPGRL+D++ + + + ++ YLVLDEADRM
Sbjct: 371 CVRPVVIYGGTQLGHSIRQIMQGCNILCATPGRLMDIIGKEKIGLGQIRYLVLDEADRML 430
Query: 386 DLGFEPQIRSIVG----QIRPDRQTLLFSATMPR-KVEKLAREILSDPV--RVTVGEVGM 438
D+GF P+++ ++ + RQTL+FSAT PR + A E L + V VG+VG
Sbjct: 431 DMGFGPEMKKLISFPGMPSKEQRQTLMFSATFPRGNFKDWAGEFLKNLTICLVAVGQVGG 490
Query: 439 ANEDITQVVHVIP--SDAEKLPWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFK 496
A D+ Q V + S EKL +L I + +VF K D I + L Q+
Sbjct: 491 ACSDVQQTVLQVGQYSKREKLVEILRN----IGEERTMVFVETKKKADFIATFLCQEKIS 546
Query: 497 AAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVH 556
++HGD++Q R + L F+ G VL+AT VAARGLDI++++ V+NFD+ +D +VH
Sbjct: 547 TTSIHGDREQREREQALGDFRCGKCPVLVATSVAARGLDIENVQHVINFDLPSTIDEYVH 606
Query: 557 RIGRTGRAGDKDGTAYTLVT-QKEARFAGELVNSLIAAGQ 595
RIGRTGR G+ G A + + ++ A LV L A Q
Sbjct: 607 RIGRTGRCGNT-GKAISFFDPEPDSHLAQPLVKVLSDAQQ 645
>POMBASE|SPBC17D1.06 [details] [associations]
symbol:dbp3 "ATP-dependent RNA helicase Dbp3
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0000027
"ribosomal large subunit assembly" evidence=ISO] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISO] [GO:0005524 "ATP binding" evidence=ISM]
[GO:0005730 "nucleolus" evidence=ISO;IDA] [GO:0006364 "rRNA
processing" evidence=ISO] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 PomBase:SPBC17D1.06 GO:GO:0005524
GO:GO:0005730 EMBL:CU329671 GenomeReviews:CU329671_GR GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0004004 GO:GO:0000027 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268804 KO:K14811 OrthoDB:EOG42JS0S
PIR:T39709 RefSeq:NP_596388.1 ProteinModelPortal:Q10202
STRING:Q10202 PRIDE:Q10202 EnsemblFungi:SPBC17D1.06.1
GeneID:2540213 KEGG:spo:SPBC17D1.06 OMA:DRILVFC NextBio:20801345
Uniprot:Q10202
Length = 578
Score = 679 (244.1 bits), Expect = 8.2e-67, P = 8.2e-67
Identities = 157/386 (40%), Positives = 226/386 (58%)
Query: 223 PVKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLP 282
P+ F++ S +L + + Y++PT IQ P +L+GRD++GIA+TGSGKT AF +P
Sbjct: 165 PILQFDELDVSAKLREGL--KNYKEPTPIQAATWPYLLAGRDVVGIAETGSGKTVAFGIP 222
Query: 283 MIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQF 342
+ ++ + + P ++ +PTRELA Q Y + ++ VYGG K +Q
Sbjct: 223 ALQYLNGLSD--NKSVPRVLVVSPTRELAIQTYENLNSLIQGTNLKAVVVYGGAPKSEQA 280
Query: 343 KELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRP 402
+ K ++I TPGRL+D++ ++ S+V YLVLDEADRM D GFE IR+I+ P
Sbjct: 281 RAAK-NASVIIGTPGRLLDLINDGSIDCSQVGYLVLDEADRMLDTGFEQDIRNIISHT-P 338
Query: 403 D------RQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMA-NEDITQVVHVI--PSD 453
D RQT+ FSAT P V LA L DPV++T+G +A +++ITQ+V ++ P
Sbjct: 339 DPTRNGSRQTVFFSATWPESVRALAATFLKDPVKITIGSDELAASQNITQIVEILDDPRS 398
Query: 454 AEK-LPWLLEK-LPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRME 511
E+ L LL K L D +L+F K +E LA+K + +HGD Q +R++
Sbjct: 399 KERMLDNLLRKHLSSGGKDDKILIFVLYKKEAARVEGTLARK-YNVVGIHGDMSQGARLQ 457
Query: 512 ILQKFKSGVYHVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTA 571
L FKSG VL+ATDVAARGLDI ++ V+N ++ +VHRIGRTGRA K GTA
Sbjct: 458 ALNDFKSGKCPVLVATDVAARGLDIPKVQLVINVTFPLTIEDYVHRIGRTGRANTK-GTA 516
Query: 572 YTLVTQKEARFAGELVNSLIAAGQNV 597
T T ++ AGELVN L A Q++
Sbjct: 517 ITFFTPQDKSHAGELVNVLRQAKQDI 542
>UNIPROTKB|I3LNN1 [details] [associations]
symbol:DDX23 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0005886 "plasma membrane" evidence=IEA] [GO:0005739
"mitochondrion" evidence=IEA] [GO:0005682 "U5 snRNP" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005739 GO:GO:0005886
GO:GO:0005524 GO:GO:0005682 GO:GO:0003676 GO:GO:0071013
GeneTree:ENSGT00690000102171 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
OMA:PIRNWKE Ensembl:ENSSSCT00000027880 Uniprot:I3LNN1
Length = 801
Score = 511 (184.9 bits), Expect = 1.2e-66, Sum P(2) = 1.2e-66
Identities = 102/214 (47%), Positives = 146/214 (68%)
Query: 188 DFYQDSASISGMSEQDVMEYKKSLAIRVSGFDVPRPVKTFEDCGFSTQLMHAISKQGYEK 247
D + + M+++D +++ +I G +P P+++++D ++ I K GY++
Sbjct: 354 DRHWSQKKLDEMTDRDWRIFREDYSITTKGGKIPNPIRSWKDSSLPPHILEVIDKCGYKE 413
Query: 248 PTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQK----EEGPIGVI 303
PT IQ QA+PI L RDIIG+A+TGSGKTAAF++P++V I P++ + ++GP +I
Sbjct: 414 PTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLLVWITTLPKIDRIEESDQGPYAII 473
Query: 304 CAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDML 363
APTRELA QI ET KF K GIR AV GG+S+ DQ L+ GCEIVIATPGRLID+L
Sbjct: 474 LAPTRELAQQIEEETIKFGKPLGIRPVAVIGGISREDQGFRLRMGCEIVIATPGRLIDVL 533
Query: 364 KMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIV 397
+ + L +SR TY+VLDEADRM D+GFEP ++ I+
Sbjct: 534 ENRYLVLSRCTYVVLDEADRMIDMGFEPDVQKIL 567
Score = 219 (82.2 bits), Expect = 1.2e-66, Sum P(2) = 1.2e-66
Identities = 42/97 (43%), Positives = 65/97 (67%)
Query: 495 FKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVNFDIARDMDMH 554
+ A LHG K Q R L K+G +L+ATDVA RG+DI+ + VVN+D+A++++ +
Sbjct: 670 YNACTLHGGKGQEQREFALSNLKAGAKDILVATDVAGRGIDIQDVSMVVNYDMAKNIEDY 729
Query: 555 VHRIGRTGRAGDKDGTAYTLVTQKEARFAGELVNSLI 591
+HRIGRTGRAG K G A T +T++++ EL +++
Sbjct: 730 IHRIGRTGRAG-KSGVAITFLTKEDSAVFYELKQAIL 765
Score = 37 (18.1 bits), Expect = 5.0e-13, Sum P(2) = 5.0e-13
Identities = 16/66 (24%), Positives = 32/66 (48%)
Query: 165 EKKKIEPIPALDHSLIDYEPFNKDFYQDSASISG-MSEQDVMEYKKSLAIRVSGFDVPRP 223
++K + A + + IDY P K+ +Q G ++ D+ + K+ + R G D+
Sbjct: 269 DRKFVFEWDASEDTSIDYNPLYKERHQVQLLGRGFIAGIDLKQQKREQS-RFYG-DLMEK 326
Query: 224 VKTFED 229
+T E+
Sbjct: 327 RRTLEE 332
>UNIPROTKB|A0R8U6 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:412694 "Bacillus thuringiensis str. Al Hakam" [GO:0003723
"RNA binding" evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISS] [GO:0005524 "ATP binding" evidence=ISS]
[GO:0043590 "bacterial nucleoid" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0043590 EMBL:CP000485 RefSeq:YP_893146.1
ProteinModelPortal:A0R8U6 STRING:A0R8U6
EnsemblBacteria:EBBACT00000069056 GeneID:4546566
GenomeReviews:CP000485_GR KEGG:btl:BALH_0232 PATRIC:18992499
HOGENOM:HOG000268810 KO:K05592 OMA:IIDHINR ProtClustDB:CLSK915749
BioCyc:BTHU412694:GH1W-393-MONOMER Uniprot:A0R8U6
Length = 528
Score = 675 (242.7 bits), Expect = 2.2e-66, P = 2.2e-66
Identities = 156/385 (40%), Positives = 221/385 (57%)
Query: 226 TFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIV 285
TF + G S L+ ++ G+E+ T IQ + +P L G+DIIG A+TG+GKTAAF LP++
Sbjct: 3 TFRELGLSDSLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLL- 61
Query: 286 HIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKEL 345
D+ + KE G++ APTRELA Q+ E K K +R+ +YGG Q + L
Sbjct: 62 ---DKVDTHKESVQ-GIVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRAL 117
Query: 346 KAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQ 405
K I++ TPGR++D + K L + V +VLDEAD M ++GF I +I+ + Q
Sbjct: 118 KKHPHIIVGTPGRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETHQ 177
Query: 406 TLLFSATMPRKVEKLAREILSDP--VRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEK 463
TLLFSATMP + ++A +++P ++V EV M N Q ++ + +K +L +
Sbjct: 178 TLLFSATMPDPIRRIAERFMTEPQHIKVKAKEVTMPN---IQQFYLEVQEKKKFD-VLTR 233
Query: 464 LPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHV 523
L + +VF K VDE+ L +G+ A +HGD QA RM +L+KFK G V
Sbjct: 234 LLDIQSPELAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIEV 293
Query: 524 LIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFA 583
L+ATDVAARGLDI + V NFDI +D + +VHRIGRTGRAG K G A VT +E+
Sbjct: 294 LVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKK-GIAMLFVTPRES--- 349
Query: 584 GELVNSLIAAGQNVSMELMDLAMKD 608
G+L N I M+ MD D
Sbjct: 350 GQLKN--IERTTKRKMDRMDAPTLD 372
>UNIPROTKB|Q63GX5 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:288681 "Bacillus cereus E33L" [GO:0003723 "RNA binding"
evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=ISS] [GO:0005524 "ATP binding" evidence=ISS] [GO:0043590
"bacterial nucleoid" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0043590 KO:K05592 OMA:IIDHINR
ProtClustDB:CLSK915749 HSSP:Q58083 EMBL:CP000001 RefSeq:YP_081836.1
ProteinModelPortal:Q63GX5 STRING:Q63GX5
EnsemblBacteria:EBBACT00000041470 GeneID:3022962
GenomeReviews:CP000001_GR KEGG:bcz:BCZK0221 PATRIC:18883656
BioCyc:BCER288681:GHG7-745-MONOMER Uniprot:Q63GX5
Length = 528
Score = 675 (242.7 bits), Expect = 2.2e-66, P = 2.2e-66
Identities = 156/385 (40%), Positives = 221/385 (57%)
Query: 226 TFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIV 285
TF + G S L+ ++ G+E+ T IQ + +P L G+DIIG A+TG+GKTAAF LP++
Sbjct: 3 TFRELGLSDSLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLL- 61
Query: 286 HIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKEL 345
D+ + KE G++ APTRELA Q+ E K K +R+ +YGG Q + L
Sbjct: 62 ---DKVDTHKESVQ-GIVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRAL 117
Query: 346 KAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQ 405
K I++ TPGR++D + K L + V +VLDEAD M ++GF I +I+ + Q
Sbjct: 118 KKHPHIIVGTPGRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETHQ 177
Query: 406 TLLFSATMPRKVEKLAREILSDP--VRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEK 463
TLLFSATMP + ++A +++P ++V EV M N Q ++ + +K +L +
Sbjct: 178 TLLFSATMPDPIRRIAERFMTEPQHIKVKAKEVTMPN---IQQFYLEVQEKKKFD-VLTR 233
Query: 464 LPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHV 523
L + +VF K VDE+ L +G+ A +HGD QA RM +L+KFK G V
Sbjct: 234 LLDIQSPELAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIEV 293
Query: 524 LIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFA 583
L+ATDVAARGLDI + V NFDI +D + +VHRIGRTGRAG K G A VT +E+
Sbjct: 294 LVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKK-GIAMLFVTPRES--- 349
Query: 584 GELVNSLIAAGQNVSMELMDLAMKD 608
G+L N I M+ MD D
Sbjct: 350 GQLKN--IERTTKRKMDRMDAPTLD 372
>UNIPROTKB|Q6HPE6 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:281309 "Bacillus thuringiensis serovar konkukian str.
97-27" [GO:0003723 "RNA binding" evidence=ISS] [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0005524
"ATP binding" evidence=ISS] [GO:0043590 "bacterial nucleoid"
evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
GO:GO:0043590 HOGENOM:HOG000268810 KO:K05592 OMA:IIDHINR
ProtClustDB:CLSK915749 HSSP:Q58083 EMBL:AE017355 RefSeq:YP_034574.1
ProteinModelPortal:Q6HPE6 EnsemblBacteria:EBBACT00000074889
GeneID:2854643 GenomeReviews:AE017355_GR KEGG:btk:BT9727_0219
PATRIC:18980863 BioCyc:BTHU281309:GJID-254-MONOMER Uniprot:Q6HPE6
Length = 528
Score = 675 (242.7 bits), Expect = 2.2e-66, P = 2.2e-66
Identities = 156/385 (40%), Positives = 221/385 (57%)
Query: 226 TFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIV 285
TF + G S L+ ++ G+E+ T IQ + +P L G+DIIG A+TG+GKTAAF LP++
Sbjct: 3 TFRELGLSDSLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLL- 61
Query: 286 HIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKEL 345
D+ + KE G++ APTRELA Q+ E K K +R+ +YGG Q + L
Sbjct: 62 ---DKVDTHKESVQ-GIVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRAL 117
Query: 346 KAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQ 405
K I++ TPGR++D + K L + V +VLDEAD M ++GF I +I+ + Q
Sbjct: 118 KKHPHIIVGTPGRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETHQ 177
Query: 406 TLLFSATMPRKVEKLAREILSDP--VRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEK 463
TLLFSATMP + ++A +++P ++V EV M N Q ++ + +K +L +
Sbjct: 178 TLLFSATMPDPIRRIAERFMTEPQHIKVKAKEVTMPN---IQQFYLEVQEKKKFD-VLTR 233
Query: 464 LPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHV 523
L + +VF K VDE+ L +G+ A +HGD QA RM +L+KFK G V
Sbjct: 234 LLDIQSPELAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIEV 293
Query: 524 LIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFA 583
L+ATDVAARGLDI + V NFDI +D + +VHRIGRTGRAG K G A VT +E+
Sbjct: 294 LVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKK-GIAMLFVTPRES--- 349
Query: 584 GELVNSLIAAGQNVSMELMDLAMKD 608
G+L N I M+ MD D
Sbjct: 350 GQLKN--IERTTKRKMDRMDAPTLD 372
>UNIPROTKB|Q73EU1 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:222523 "Bacillus cereus ATCC 10987" [GO:0003723 "RNA
binding" evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISS] [GO:0005524 "ATP binding" evidence=ISS]
[GO:0043590 "bacterial nucleoid" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0043590 HOGENOM:HOG000268810 KO:K05592
OMA:IIDHINR ProtClustDB:CLSK915749 HSSP:Q58083 EMBL:AE017194
RefSeq:NP_976595.1 ProteinModelPortal:Q73EU1 STRING:Q73EU1
DNASU:2752637 EnsemblBacteria:EBBACT00000029857 GeneID:2752637
GenomeReviews:AE017194_GR KEGG:bca:BCE_0267 PATRIC:18849372
Uniprot:Q73EU1
Length = 525
Score = 675 (242.7 bits), Expect = 2.2e-66, P = 2.2e-66
Identities = 156/385 (40%), Positives = 221/385 (57%)
Query: 226 TFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIV 285
TF + G S L+ ++ G+E+ T IQ + +P L G+DIIG A+TG+GKTAAF LP++
Sbjct: 3 TFRELGLSDSLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLL- 61
Query: 286 HIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKEL 345
D+ + KE G++ APTRELA Q+ E K K +R+ +YGG Q + L
Sbjct: 62 ---DKVDTHKESVQ-GIVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRAL 117
Query: 346 KAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQ 405
K I++ TPGR++D + K L + V +VLDEAD M ++GF I +I+ + Q
Sbjct: 118 KKHPHIIVGTPGRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETHQ 177
Query: 406 TLLFSATMPRKVEKLAREILSDP--VRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEK 463
TLLFSATMP + ++A +++P ++V EV M N Q ++ + +K +L +
Sbjct: 178 TLLFSATMPDPIRRIAERFMTEPQHIKVKAKEVTMPN---IQQFYLEVQEKKKFD-VLTR 233
Query: 464 LPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHV 523
L + +VF K VDE+ L +G+ A +HGD QA RM +L+KFK G V
Sbjct: 234 LLDIQSPELAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIEV 293
Query: 524 LIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFA 583
L+ATDVAARGLDI + V NFDI +D + +VHRIGRTGRAG K G A VT +E+
Sbjct: 294 LVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKK-GIAMLFVTPRES--- 349
Query: 584 GELVNSLIAAGQNVSMELMDLAMKD 608
G+L N I M+ MD D
Sbjct: 350 GQLKN--IERTTKRKMDRMDAPTLD 372
>UNIPROTKB|Q81IT9 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:226900 "Bacillus cereus ATCC 14579" [GO:0003723 "RNA
binding" evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISS] [GO:0005524 "ATP binding" evidence=ISS]
[GO:0043590 "bacterial nucleoid" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0043590 KO:K05592 OMA:IIDHINR
ProtClustDB:CLSK915749 HSSP:Q58083 EMBL:AE016877 RefSeq:NP_830127.1
STRING:Q81IT9 DNASU:1202612 EnsemblBacteria:EBBACT00000032730
GeneID:1202612 GenomeReviews:AE016877_GR KEGG:bce:BC0259
PATRIC:32596146 BioCyc:BCER226900:GJEU-261-MONOMER Uniprot:Q81IT9
Length = 533
Score = 675 (242.7 bits), Expect = 2.2e-66, P = 2.2e-66
Identities = 156/385 (40%), Positives = 221/385 (57%)
Query: 226 TFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIV 285
TF + G S L+ ++ G+E+ T IQ + +P L G+DIIG A+TG+GKTAAF LP++
Sbjct: 3 TFRELGLSDSLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLL- 61
Query: 286 HIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKEL 345
D+ + KE G++ APTRELA Q+ E K K +R+ +YGG Q + L
Sbjct: 62 ---DKVDTHKESVQ-GIVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRAL 117
Query: 346 KAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQ 405
K I++ TPGR++D + K L + V +VLDEAD M ++GF I +I+ + Q
Sbjct: 118 KKHPHIIVGTPGRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETHQ 177
Query: 406 TLLFSATMPRKVEKLAREILSDP--VRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEK 463
TLLFSATMP + ++A +++P ++V EV M N Q ++ + +K +L +
Sbjct: 178 TLLFSATMPDPIRRIAERFMTEPQHIKVKAKEVTMPN---IQQFYLEVQEKKKFD-VLTR 233
Query: 464 LPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHV 523
L + +VF K VDE+ L +G+ A +HGD QA RM +L+KFK G V
Sbjct: 234 LLDIQSPELAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIEV 293
Query: 524 LIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFA 583
L+ATDVAARGLDI + V NFDI +D + +VHRIGRTGRAG K G A VT +E+
Sbjct: 294 LVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKK-GIAMLFVTPRES--- 349
Query: 584 GELVNSLIAAGQNVSMELMDLAMKD 608
G+L N I M+ MD D
Sbjct: 350 GQLKN--IERTTKRKMDRMDAPTLD 372
>UNIPROTKB|Q81VG0 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:1392 "Bacillus anthracis" [GO:0003723 "RNA binding"
evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=ISS] [GO:0005524 "ATP binding" evidence=ISS] [GO:0008150
"biological_process" evidence=ND] [GO:0043590 "bacterial nucleoid"
evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043590
HOGENOM:HOG000268810 KO:K05592 OMA:IIDHINR ProtClustDB:CLSK915749
RefSeq:NP_842800.1 RefSeq:YP_016853.1 RefSeq:YP_026518.1
HSSP:Q58083 ProteinModelPortal:Q81VG0 DNASU:1087008
EnsemblBacteria:EBBACT00000010496 EnsemblBacteria:EBBACT00000018111
EnsemblBacteria:EBBACT00000022275 GeneID:1087008 GeneID:2818435
GeneID:2849489 KEGG:ban:BA_0247 KEGG:bar:GBAA_0247 KEGG:bat:BAS0233
BioCyc:BANT260799:GJAJ-255-MONOMER
BioCyc:BANT261594:GJ7F-263-MONOMER Uniprot:Q81VG0
Length = 528
Score = 675 (242.7 bits), Expect = 2.2e-66, P = 2.2e-66
Identities = 156/385 (40%), Positives = 221/385 (57%)
Query: 226 TFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIV 285
TF + G S L+ ++ G+E+ T IQ + +P L G+DIIG A+TG+GKTAAF LP++
Sbjct: 3 TFRELGLSDSLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLL- 61
Query: 286 HIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKEL 345
D+ + KE G++ APTRELA Q+ E K K +R+ +YGG Q + L
Sbjct: 62 ---DKVDTHKESVQ-GIVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRAL 117
Query: 346 KAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQ 405
K I++ TPGR++D + K L + V +VLDEAD M ++GF I +I+ + Q
Sbjct: 118 KKHPHIIVGTPGRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETHQ 177
Query: 406 TLLFSATMPRKVEKLAREILSDP--VRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEK 463
TLLFSATMP + ++A +++P ++V EV M N Q ++ + +K +L +
Sbjct: 178 TLLFSATMPDPIRRIAERFMTEPQHIKVKAKEVTMPN---IQQFYLEVQEKKKFD-VLTR 233
Query: 464 LPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHV 523
L + +VF K VDE+ L +G+ A +HGD QA RM +L+KFK G V
Sbjct: 234 LLDIQSPELAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIEV 293
Query: 524 LIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFA 583
L+ATDVAARGLDI + V NFDI +D + +VHRIGRTGRAG K G A VT +E+
Sbjct: 294 LVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKK-GIAMLFVTPRES--- 349
Query: 584 GELVNSLIAAGQNVSMELMDLAMKD 608
G+L N I M+ MD D
Sbjct: 350 GQLKN--IERTTKRKMDRMDAPTLD 372
>TIGR_CMR|BA_0247 [details] [associations]
symbol:BA_0247 "ATP-dependent RNA helicase, DEAD/DEAH box
family" species:198094 "Bacillus anthracis str. Ames" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 EMBL:AE016879 EMBL:AE017334 EMBL:AE017225
GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043590
HOGENOM:HOG000268810 KO:K05592 OMA:IIDHINR ProtClustDB:CLSK915749
RefSeq:NP_842800.1 RefSeq:YP_016853.1 RefSeq:YP_026518.1
HSSP:Q58083 ProteinModelPortal:Q81VG0 DNASU:1087008
EnsemblBacteria:EBBACT00000010496 EnsemblBacteria:EBBACT00000018111
EnsemblBacteria:EBBACT00000022275 GeneID:1087008 GeneID:2818435
GeneID:2849489 KEGG:ban:BA_0247 KEGG:bar:GBAA_0247 KEGG:bat:BAS0233
BioCyc:BANT260799:GJAJ-255-MONOMER
BioCyc:BANT261594:GJ7F-263-MONOMER Uniprot:Q81VG0
Length = 528
Score = 675 (242.7 bits), Expect = 2.2e-66, P = 2.2e-66
Identities = 156/385 (40%), Positives = 221/385 (57%)
Query: 226 TFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIV 285
TF + G S L+ ++ G+E+ T IQ + +P L G+DIIG A+TG+GKTAAF LP++
Sbjct: 3 TFRELGLSDSLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLL- 61
Query: 286 HIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKEL 345
D+ + KE G++ APTRELA Q+ E K K +R+ +YGG Q + L
Sbjct: 62 ---DKVDTHKESVQ-GIVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRAL 117
Query: 346 KAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQ 405
K I++ TPGR++D + K L + V +VLDEAD M ++GF I +I+ + Q
Sbjct: 118 KKHPHIIVGTPGRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETHQ 177
Query: 406 TLLFSATMPRKVEKLAREILSDP--VRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEK 463
TLLFSATMP + ++A +++P ++V EV M N Q ++ + +K +L +
Sbjct: 178 TLLFSATMPDPIRRIAERFMTEPQHIKVKAKEVTMPN---IQQFYLEVQEKKKFD-VLTR 233
Query: 464 LPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHV 523
L + +VF K VDE+ L +G+ A +HGD QA RM +L+KFK G V
Sbjct: 234 LLDIQSPELAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIEV 293
Query: 524 LIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFA 583
L+ATDVAARGLDI + V NFDI +D + +VHRIGRTGRAG K G A VT +E+
Sbjct: 294 LVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKK-GIAMLFVTPRES--- 349
Query: 584 GELVNSLIAAGQNVSMELMDLAMKD 608
G+L N I M+ MD D
Sbjct: 350 GQLKN--IERTTKRKMDRMDAPTLD 372
>UNIPROTKB|E1BXX5 [details] [associations]
symbol:DDX59 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005622 "intracellular"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 GO:GO:0005622 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR007529 Pfam:PF04438 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00610000086076
CTD:83479 OMA:VTRPIID EMBL:AADN02033796 IPI:IPI00587299
RefSeq:XP_422189.2 ProteinModelPortal:E1BXX5
Ensembl:ENSGALT00000003389 GeneID:424346 KEGG:gga:424346
NextBio:20826688 Uniprot:E1BXX5
Length = 625
Score = 674 (242.3 bits), Expect = 2.8e-66, P = 2.8e-66
Identities = 151/419 (36%), Positives = 235/419 (56%)
Query: 189 FYQDSASISGMSEQDVMEYKKSLAIRVSGFDVPRPVKTFEDCGFSTQLMHAISKQGYEKP 248
FY+D + I + ++ V K L I + G VPRP+ FE CGF L + GYE P
Sbjct: 173 FYKDHSFILSLQDEQVENLKLQLGIAIQGQQVPRPIIEFEHCGFPETLNSNLKNSGYEVP 232
Query: 249 TSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTR 308
T IQ Q +P+ L GRDI+ A TGSGKTAAF+LP+I+ ++++ E P +I APTR
Sbjct: 233 TPIQMQMIPVGLLGRDIVASADTGSGKTAAFLLPVIMKVLNETET-----PSALILAPTR 287
Query: 309 ELAHQIYLETKKF-AKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKA 367
ELA QI + K+ A +R + GG+ Q LK +++IATPGRL+++L+ +
Sbjct: 288 ELAIQIERQAKELMAGLPNMRTVLLVGGLPLPPQLHRLKQSVKVIIATPGRLLEILRQSS 347
Query: 368 LTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLAREILSD 427
+ + + +V+DE D M +GF+ Q+ I+ I D QT+L SAT+P +E LA ++L +
Sbjct: 348 VQLHGIKIVVVDEVDTMLKMGFQQQVLDILEDISHDHQTILVSATIPVGIEHLANQLLHN 407
Query: 428 PVRVTVGEVGMANEDITQVVHVI--PSDAEKLPWLLEKLPGMIDDGDVLVFASKKTTVDE 485
VR+T+GE + ++ Q++ + PS +KL +L + VLVF K D
Sbjct: 408 FVRITIGEKNLPCSNVRQIILWVEEPSKKKKLFEILNDKK--LFKPPVLVFVDCKLGADL 465
Query: 486 IESQLAQ-KGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVN 544
+ + + G + ++H +K Q R ILQ Y V+++T V RGLD+ ++K VVN
Sbjct: 466 LSDAVHKITGLQCTSMHSEKSQVERTAILQGLLQEKYEVIVSTGVLGRGLDLVNVKLVVN 525
Query: 545 FDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELVNSLIAAGQNVSMELMD 603
FD+ MD +VH++GR GR G GTA T + + ++V + G + +L++
Sbjct: 526 FDMPSSMDEYVHQVGRAGRLGHS-GTAITFINNNSKKLFWDVVKRVKPTGTILPPQLLN 583
>UNIPROTKB|E2R4Y9 [details] [associations]
symbol:DDX59 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR007529 Pfam:PF04438
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00610000086076 OMA:VTRPIID EMBL:AAEX03005031
Ensembl:ENSCAFT00000017696 Uniprot:E2R4Y9
Length = 623
Score = 673 (242.0 bits), Expect = 3.6e-66, P = 3.6e-66
Identities = 153/425 (36%), Positives = 236/425 (55%)
Query: 184 PFNKDF-YQDSASISGMSEQDVMEYKKSLAIRVSGFDVPRPVKTFEDCGFSTQLMHAISK 242
P N + Y++ I + E + K+ L I V G DV RP+ FE CGF L H +
Sbjct: 162 PLNTLYVYKEHPFILNLQEDQIENLKRQLGIVVQGQDVTRPIIDFEHCGFPEALNHNLKT 221
Query: 243 QGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGV 302
GYE PT IQ Q +P+ L GRD++ A TGSGKTAAF+LP+I L + + P +
Sbjct: 222 SGYEVPTPIQMQMIPVGLLGRDVLASADTGSGKTAAFLLPVITRA-----LCESKTPSAL 276
Query: 303 ICAPTRELAHQIYLETKKFAKS-HGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLID 361
I PTRELA QI + K+ ++ + GG+ Q L+ +++IATPGRL+D
Sbjct: 277 ILTPTRELAIQIENQAKELMSGLPRMKTVLLVGGLPLPPQLYRLRQHVKVIIATPGRLLD 336
Query: 362 MLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLA 421
++K ++ + + +V+DEAD M +GF+ Q+ I+ + D QT+L SAT+P +E+LA
Sbjct: 337 IIKQSSVELCGIKIVVVDEADTMLKMGFQQQVLDILEHVPNDSQTILVSATIPTSIEQLA 396
Query: 422 REILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEKLPGM-IDDGDVLVFASKK 480
++L +PVR+ GE + + Q++ + A+K L E L + VLVF K
Sbjct: 397 SQLLHNPVRIITGEKNLPCSSVRQIILWVEEPAKKKK-LFEILNDKKLFKPPVLVFVDCK 455
Query: 481 TTVDEIESQLAQK--GFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKS 538
D + S+ QK G K+ ++H +K Q R IL+ G Y V+++T V RGLD+ S
Sbjct: 456 LGADLL-SEAVQKITGLKSVSIHSEKSQTERKNILKGLLEGDYEVVVSTGVLGRGLDLIS 514
Query: 539 IKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELVNSLIAAGQNVS 598
++ VVNFD+ MD +VH++GR GR G ++GTA T + R ++ + G +
Sbjct: 515 VRLVVNFDMPSSMDEYVHQVGRVGRLG-QNGTAITFINNNSKRLFWDIAKRVKPTGSILP 573
Query: 599 MELMD 603
+L++
Sbjct: 574 PQLLN 578
>UNIPROTKB|I3LV06 [details] [associations]
symbol:DDX59 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005622 "intracellular" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 GO:GO:0005622 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR007529 Pfam:PF04438 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00610000086076
CTD:83479 OMA:VTRPIID EMBL:FP312674 RefSeq:XP_003357711.1
Ensembl:ENSSSCT00000031167 GeneID:100621580 KEGG:ssc:100621580
Uniprot:I3LV06
Length = 607
Score = 671 (241.3 bits), Expect = 5.8e-66, P = 5.8e-66
Identities = 152/418 (36%), Positives = 232/418 (55%)
Query: 190 YQDSASISGMSEQDVMEYKKSLAIRVSGFDVPRPVKTFEDCGFSTQLMHAISKQGYEKPT 249
Y + A IS + E + + L I V G VPRP+ F CGF L + GYE PT
Sbjct: 156 YTEHAFISNLREDQIENLRGQLGIVVEGRGVPRPIIDFGHCGFPETLNFNLKTAGYEVPT 215
Query: 250 SIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRE 309
IQ Q +P+ L GRD++ A TGSGKTAAF+LP+I + Q + P ++ PTRE
Sbjct: 216 PIQMQMIPVGLLGRDLLASADTGSGKTAAFLLPVITRALVQ-----SKAPSALVLTPTRE 270
Query: 310 LAHQIYLETKKFAKS-HGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKAL 368
LA QI + K+ +R + + GG+ Q L+ +++IATPGRL+D++K ++
Sbjct: 271 LAIQIERQAKELMGGLPRMRTALLVGGLPAPPQLHRLRQRVQVIIATPGRLLDIMKQSSV 330
Query: 369 TMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLAREILSDP 428
+ + +V+DEAD M +GF+ Q+ ++ + D QT+L SAT+P ++E+LA +L DP
Sbjct: 331 DLGNIKIVVVDEADTMLKMGFQEQVLDVLENVPQDCQTILVSATIPTRIEQLASRLLHDP 390
Query: 429 VRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEKLPGM-IDDGDVLVFASKKTTVDEIE 487
VRV GE + + Q+V + A+K L E L + VLVF K D +
Sbjct: 391 VRVLAGEKNLPCPSVRQIVLWVEEPAKKKK-LFEILNDKKLFKPPVLVFVDCKLGADLL- 448
Query: 488 SQLAQK--GFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVNF 545
S+ +K G K+ ++H +K Q R IL+ G Y V+++T V RGLD+ S+K VVNF
Sbjct: 449 SEAVEKITGLKSTSMHSEKSQIERKTILEGLLEGDYDVVVSTGVLGRGLDLISVKLVVNF 508
Query: 546 DIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELVNSLIAAGQNVSMELMD 603
D+ MD +VH++GR GR G ++GTA T + R ++ + G + +L++
Sbjct: 509 DMPSSMDEYVHQVGRVGRLG-QNGTAITFINNNSKRLFWDIAKRVKPTGSLLPPQLLN 565
>TIGR_CMR|SO_1383 [details] [associations]
symbol:SO_1383 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0006139
"nucleobase-containing compound metabolic process" evidence=ISS]
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:AE014299
GenomeReviews:AE014299_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
HSSP:Q58083 HOGENOM:HOG000268807 RefSeq:NP_717003.1
ProteinModelPortal:Q8EH47 GeneID:1169204 KEGG:son:SO_1383
PATRIC:23522420 OMA:SEVVHGE ProtClustDB:CLSK906234 Uniprot:Q8EH47
Length = 433
Score = 671 (241.3 bits), Expect = 5.8e-66, P = 5.8e-66
Identities = 150/371 (40%), Positives = 224/371 (60%)
Query: 227 FEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVH 286
FE F +++ AIS GY+K T IQ QA+P I G+D++ A+TG+GKTAAF LP++
Sbjct: 3 FESFSFCPEILRAISDCGYQKMTPIQQQAIPAIRRGQDVLASAQTGTGKTAAFALPILQK 62
Query: 287 IMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELK 346
+++ P + +I PTRELA Q+ + ++K V +YGG+ Q ++LK
Sbjct: 63 MVENPSETLKSNTRVLILTPTRELAAQVAENVEAYSKYLNFSVLTIYGGVKVETQAQKLK 122
Query: 347 AGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQT 406
G +I++ATPGRL++ L L++S V +LVLDEADRM D+GF I+ I+ + RQ
Sbjct: 123 RGADIIVATPGRLLEHLTACNLSLSSVDFLVLDEADRMLDMGFSADIQKILQAVNKKRQN 182
Query: 407 LLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEKLPG 466
LLFSAT V+KLA E++ P ++ + + ++QVV+ P + + LL +L G
Sbjct: 183 LLFSATFSSAVKKLANEMMIKPQVISADKQNTTADTVSQVVY--PVEQRRKRELLSELIG 240
Query: 467 MIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIA 526
+ VLVF + + D + +L G + +HG+K Q SR L++F SG VL+A
Sbjct: 241 KKNWQQVLVFTATRDAADTLVKELNLDGIPSEVVHGEKAQGSRRRALREFVSGKVRVLVA 300
Query: 527 TDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGEL 586
T+VAARGLDI S++ VVNFD+ + +VHRIGRTGRAG K G A + V+++E R +
Sbjct: 301 TEVAARGLDIPSLEYVVNFDLPFLAEDYVHRIGRTGRAG-KSGVAISFVSREEERTLAD- 358
Query: 587 VNSLIAAGQNV 597
+ LI GQ +
Sbjct: 359 IEKLI--GQKI 367
>UNIPROTKB|P96614 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:224308 "Bacillus subtilis subsp. subtilis str. 168"
[GO:0003723 "RNA binding" evidence=IDA] [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005524 "ATP binding" evidence=IDA] [GO:0009409
"response to cold" evidence=IGI] [GO:0010501 "RNA secondary
structure unwinding" evidence=IDA] [GO:0043590 "bacterial nucleoid"
evidence=IDA] [GO:0005840 "ribosome" evidence=IDA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005737 GO:GO:0009409
GO:GO:0003723 EMBL:AL009126 GenomeReviews:AL009126_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043590
HOGENOM:HOG000268810 HSSP:Q58083 ProtClustDB:CLSK886742
EMBL:AB001488 PIR:D69772 RefSeq:NP_388339.1
ProteinModelPortal:P96614 SMR:P96614 IntAct:P96614 DNASU:938170
EnsemblBacteria:EBBACT00000000739 GeneID:938170 KEGG:bsu:BSU04580
PATRIC:18972500 GenoList:BSU04580 BioCyc:BSUB:BSU04580-MONOMER
GO:GO:0010501 Uniprot:P96614
Length = 494
Score = 670 (240.9 bits), Expect = 7.4e-66, P = 7.4e-66
Identities = 146/356 (41%), Positives = 213/356 (59%)
Query: 226 TFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIV 285
TF+D S+ LM AI++ G+E+ T IQ Q +P+ LS +D+IG A+TG+GKTAAF +P++
Sbjct: 4 TFQDFNLSSDLMKAINRMGFEEATPIQAQTIPLGLSNKDVIGQAQTGTGKTAAFGIPLVE 63
Query: 286 HIM-DQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKE 344
I + P +Q ++ APTRELA Q+ E K + +V +YGG Q +
Sbjct: 64 KINPESPNIQ------AIVIAPTRELAIQVSEELYKIGQDKRAKVLPIYGGQDIGRQIRA 117
Query: 345 LKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDR 404
LK I++ TPGRL+D + + + ++ V +V+DEAD M ++GF I SI+ + +
Sbjct: 118 LKKNPNIIVGTPGRLLDHINRRTIRLNNVNTVVMDEADEMLNMGFIDDIESILSNVPSEH 177
Query: 405 QTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEKL 464
QTLLFSATMP ++++A +++P V V M +I Q ++ + +K L L
Sbjct: 178 QTLLFSATMPAPIKRIAERFMTEPEHVKVKAKEMTVSNIQQF-YLEVQERKKFDTLTRLL 236
Query: 465 PGMIDDGDV-LVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHV 523
I ++ +VF K VDE+ L +G+ A +HGD QA RM L+KFK G V
Sbjct: 237 D--IQSPELAIVFGRTKRRVDELAEALNLRGYAAEGIHGDLTQAKRMVALRKFKEGAIEV 294
Query: 524 LIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKE 579
L+ATDVAARGLDI + V NFD+ +D + +VHRIGRTGRAG K G A T +T +E
Sbjct: 295 LVATDVAARGLDISGVTHVYNFDVPQDPESYVHRIGRTGRAG-KTGMAMTFITPRE 349
>UNIPROTKB|Q48AV0 [details] [associations]
symbol:CPS_0042 "ATP-dependent RNA helicase, DEAD box
family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0016070
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 RefSeq:YP_266818.1 ProteinModelPortal:Q48AV0
GeneID:3521124 KEGG:cps:CPS_0042 PATRIC:21463513 OMA:AITESAY
BioCyc:CPSY167879:GI48-153-MONOMER Uniprot:Q48AV0
Length = 420
Score = 670 (240.9 bits), Expect = 7.4e-66, P = 7.4e-66
Identities = 139/354 (39%), Positives = 219/354 (61%)
Query: 226 TFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIV 285
TF + L+ AI++ Y++PT IQ Q++P+IL+ D++ A+TG+GKTAAF LP++
Sbjct: 6 TFSSFSLDSTLLKAITESAYDEPTEIQKQSIPLILAKHDVMARAQTGTGKTAAFALPILQ 65
Query: 286 HIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKEL 345
++ + E + + PTRELA Q++ + + + + YGG+S Q EL
Sbjct: 66 QLISVQPCKPELRAL--VLTPTRELAQQVHKSFCHYGQFTDVTIGIAYGGVSTKKQISEL 123
Query: 346 KAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQ 405
K G +I+IATPGRL+D+L+ +++++S + LV DEADRM D+GF+ +I I + +Q
Sbjct: 124 KVGVDILIATPGRLLDLLRTESVSLSNIETLVFDEADRMLDMGFKEEIDQITQYLPKTKQ 183
Query: 406 TLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEKLP 465
TLLFSAT + K+++ IL +P V + E A +D+ Q+V+ + DA++ L L
Sbjct: 184 TLLFSATFADDIYKMSKNILVEPKMVEIDEKNKAADDVEQLVYGV--DADRKRELTSFLI 241
Query: 466 GMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLI 525
G + VLVF K D++ ++ + G K+ A+HGDK Q +R + L +FK G LI
Sbjct: 242 GSRNWKQVLVFTRTKQCADDLAKEMTKDGVKSLAIHGDKSQGAREKALHEFKEGKVRALI 301
Query: 526 ATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKE 579
ATDVAARG+DIK + V+N+++ + + +VHRIGRT RAG+ G A +LV+ E
Sbjct: 302 ATDVAARGIDIKGLSHVINYELPYNAEDYVHRIGRTARAGNS-GLAVSLVSPGE 354
>TIGR_CMR|CPS_0042 [details] [associations]
symbol:CPS_0042 "ATP-dependent RNA helicase, DEAD box
family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0016070
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 RefSeq:YP_266818.1 ProteinModelPortal:Q48AV0
GeneID:3521124 KEGG:cps:CPS_0042 PATRIC:21463513 OMA:AITESAY
BioCyc:CPSY167879:GI48-153-MONOMER Uniprot:Q48AV0
Length = 420
Score = 670 (240.9 bits), Expect = 7.4e-66, P = 7.4e-66
Identities = 139/354 (39%), Positives = 219/354 (61%)
Query: 226 TFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIV 285
TF + L+ AI++ Y++PT IQ Q++P+IL+ D++ A+TG+GKTAAF LP++
Sbjct: 6 TFSSFSLDSTLLKAITESAYDEPTEIQKQSIPLILAKHDVMARAQTGTGKTAAFALPILQ 65
Query: 286 HIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKEL 345
++ + E + + PTRELA Q++ + + + + YGG+S Q EL
Sbjct: 66 QLISVQPCKPELRAL--VLTPTRELAQQVHKSFCHYGQFTDVTIGIAYGGVSTKKQISEL 123
Query: 346 KAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQ 405
K G +I+IATPGRL+D+L+ +++++S + LV DEADRM D+GF+ +I I + +Q
Sbjct: 124 KVGVDILIATPGRLLDLLRTESVSLSNIETLVFDEADRMLDMGFKEEIDQITQYLPKTKQ 183
Query: 406 TLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEKLP 465
TLLFSAT + K+++ IL +P V + E A +D+ Q+V+ + DA++ L L
Sbjct: 184 TLLFSATFADDIYKMSKNILVEPKMVEIDEKNKAADDVEQLVYGV--DADRKRELTSFLI 241
Query: 466 GMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLI 525
G + VLVF K D++ ++ + G K+ A+HGDK Q +R + L +FK G LI
Sbjct: 242 GSRNWKQVLVFTRTKQCADDLAKEMTKDGVKSLAIHGDKSQGAREKALHEFKEGKVRALI 301
Query: 526 ATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKE 579
ATDVAARG+DIK + V+N+++ + + +VHRIGRT RAG+ G A +LV+ E
Sbjct: 302 ATDVAARGIDIKGLSHVINYELPYNAEDYVHRIGRTARAGNS-GLAVSLVSPGE 354
>UNIPROTKB|Q8EBV7 [details] [associations]
symbol:SO_3388 "ATP-dependent RNA helicase DEAD box family"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
RefSeq:NP_718942.1 ProteinModelPortal:Q8EBV7 GeneID:1171066
KEGG:son:SO_3388 PATRIC:23526456 OMA:SHLVRSK ProtClustDB:CLSK907144
Uniprot:Q8EBV7
Length = 409
Score = 669 (240.6 bits), Expect = 9.4e-66, P = 9.4e-66
Identities = 148/367 (40%), Positives = 226/367 (61%)
Query: 226 TFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIV 285
+F +TQL+ +++ GY++PT IQ +A+P IL+ +D++ A+TG+GKTAAF LP++
Sbjct: 2 SFSALSLNTQLVDTLAELGYQQPTPIQVEAIPAILTKQDVMAGAQTGTGKTAAFALPILQ 61
Query: 286 HIMDQPELQKEEGPI-GVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKE 344
+M + I ++ PTRELA Q+ K+AK IRV YGG+S Q
Sbjct: 62 LLMADNQSDHAAKAIRALVLVPTRELALQVQQSFVKYAKGTDIRVGIAYGGVSIEAQQAV 121
Query: 345 LKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDR 404
AG +++IATPGRL+D L+ AL ++++ LV DEADRM D+GF +I++++ Q+ R
Sbjct: 122 FNAGIDVLIATPGRLLDHLRQGALNLNQLNTLVFDEADRMLDMGFMDEIQAVLKQVPAQR 181
Query: 405 QTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEKL 464
QTLLFSAT+ + ++ +L DP R+ V + I Q V+ I SD K ++ L
Sbjct: 182 QTLLFSATLDDSIFSFSKNLLRDPKRIEVAKPNTTAAQIEQRVYAIDSD-RKTEFV-SHL 239
Query: 465 PGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVL 524
+ VL+F+ K VD++ +QL + G + HGD Q +R ++LQ+FK G+ VL
Sbjct: 240 VRSKNWQQVLIFSRTKQGVDKLTAQLNKLGVATQSFHGDLSQGAREKVLQEFKQGLVQVL 299
Query: 525 IATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAG 584
+ATDVAARGLDI ++ V+NF++ + ++HRIGRTGRAG G A TL +Q++A
Sbjct: 300 VATDVAARGLDIAELQYVINFELPFIAEDYIHRIGRTGRAGSA-GLAITLFSQEDALLLE 358
Query: 585 ELVNSLI 591
E V +L+
Sbjct: 359 E-VETLL 364
>TIGR_CMR|SO_3388 [details] [associations]
symbol:SO_3388 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
RefSeq:NP_718942.1 ProteinModelPortal:Q8EBV7 GeneID:1171066
KEGG:son:SO_3388 PATRIC:23526456 OMA:SHLVRSK ProtClustDB:CLSK907144
Uniprot:Q8EBV7
Length = 409
Score = 669 (240.6 bits), Expect = 9.4e-66, P = 9.4e-66
Identities = 148/367 (40%), Positives = 226/367 (61%)
Query: 226 TFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIV 285
+F +TQL+ +++ GY++PT IQ +A+P IL+ +D++ A+TG+GKTAAF LP++
Sbjct: 2 SFSALSLNTQLVDTLAELGYQQPTPIQVEAIPAILTKQDVMAGAQTGTGKTAAFALPILQ 61
Query: 286 HIMDQPELQKEEGPI-GVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKE 344
+M + I ++ PTRELA Q+ K+AK IRV YGG+S Q
Sbjct: 62 LLMADNQSDHAAKAIRALVLVPTRELALQVQQSFVKYAKGTDIRVGIAYGGVSIEAQQAV 121
Query: 345 LKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDR 404
AG +++IATPGRL+D L+ AL ++++ LV DEADRM D+GF +I++++ Q+ R
Sbjct: 122 FNAGIDVLIATPGRLLDHLRQGALNLNQLNTLVFDEADRMLDMGFMDEIQAVLKQVPAQR 181
Query: 405 QTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEKL 464
QTLLFSAT+ + ++ +L DP R+ V + I Q V+ I SD K ++ L
Sbjct: 182 QTLLFSATLDDSIFSFSKNLLRDPKRIEVAKPNTTAAQIEQRVYAIDSD-RKTEFV-SHL 239
Query: 465 PGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVL 524
+ VL+F+ K VD++ +QL + G + HGD Q +R ++LQ+FK G+ VL
Sbjct: 240 VRSKNWQQVLIFSRTKQGVDKLTAQLNKLGVATQSFHGDLSQGAREKVLQEFKQGLVQVL 299
Query: 525 IATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAG 584
+ATDVAARGLDI ++ V+NF++ + ++HRIGRTGRAG G A TL +Q++A
Sbjct: 300 VATDVAARGLDIAELQYVINFELPFIAEDYIHRIGRTGRAGSA-GLAITLFSQEDALLLE 358
Query: 585 ELVNSLI 591
E V +L+
Sbjct: 359 E-VETLL 364
>UNIPROTKB|Q5T1V6 [details] [associations]
symbol:DDX59 "Probable ATP-dependent RNA helicase DDX59"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0046872 "metal ion
binding" evidence=IEA] [GO:0005622 "intracellular" evidence=IDA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0046872
GO:GO:0003723 GO:GO:0005622 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR007529 Pfam:PF04438 PROSITE:PS51083
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
EMBL:AL136611 EMBL:AL445483 EMBL:BC014183 EMBL:BC041801
IPI:IPI00010449 IPI:IPI00217157 RefSeq:NP_001026895.2
UniGene:Hs.497332 PDB:2YQP PDBsum:2YQP ProteinModelPortal:Q5T1V6
SMR:Q5T1V6 PhosphoSite:Q5T1V6 DMDM:74762230 PaxDb:Q5T1V6
PRIDE:Q5T1V6 DNASU:83479 Ensembl:ENST00000331314
Ensembl:ENST00000447706 GeneID:83479 KEGG:hsa:83479 UCSC:uc009wzk.3
CTD:83479 GeneCards:GC01M200594 HGNC:HGNC:25360 HPA:HPA047166
neXtProt:NX_Q5T1V6 PharmGKB:PA142672000 HOGENOM:HOG000006599
HOVERGEN:HBG106120 InParanoid:Q5T1V6 OMA:VTRPIID PhylomeDB:Q5T1V6
EvolutionaryTrace:Q5T1V6 GenomeRNAi:83479 NextBio:72419
ArrayExpress:Q5T1V6 Bgee:Q5T1V6 CleanEx:HS_DDX59
Genevestigator:Q5T1V6 Uniprot:Q5T1V6
Length = 619
Score = 667 (239.9 bits), Expect = 1.5e-65, P = 1.5e-65
Identities = 155/425 (36%), Positives = 237/425 (55%)
Query: 184 PFNKDF-YQDSASISGMSEQDVMEYKKSLAIRVSGFDVPRPVKTFEDCGFSTQLMHAISK 242
P N + Y++ I + E + K+ L I V G +V RP+ FE C L H + K
Sbjct: 161 PLNASYVYKEHPFILNLQEDQIENLKQQLGILVQGQEVTRPIIDFEHCSLPEVLNHNLKK 220
Query: 243 QGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGV 302
GYE PT IQ Q +P+ L GRDI+ A TGSGKTAAF+LP+I+ L + + P +
Sbjct: 221 SGYEVPTPIQMQMIPVGLLGRDILASADTGSGKTAAFLLPVIMRA-----LFESKTPSAL 275
Query: 303 ICAPTRELAHQIYLETKKFAKS-HGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLID 361
I PTRELA QI + K+ ++ + GG+ Q L+ +++IATPGRL+D
Sbjct: 276 ILTPTRELAIQIERQAKELMSGLPRMKTVLLVGGLPLPPQLYRLQQHVKVIIATPGRLLD 335
Query: 362 MLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLA 421
++K ++ + V +V+DEAD M +GF+ Q+ I+ I D QT+L SAT+P +E+LA
Sbjct: 336 IIKQSSVELCGVKIVVVDEADTMLKMGFQQQVLDILENIPNDCQTILVSATIPTSIEQLA 395
Query: 422 REILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEKLPGM-IDDGDVLVFASKK 480
++L +PVR+ GE + ++ Q++ + A+K L E L + VLVF K
Sbjct: 396 SQLLHNPVRIITGEKNLPCANVRQIILWVEDPAKKKK-LFEILNDKKLFKPPVLVFVDCK 454
Query: 481 TTVDEIESQLAQK--GFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKS 538
D + S+ QK G K+ ++H +K Q R IL+ G Y V+++T V RGLD+ S
Sbjct: 455 LGADLL-SEAVQKITGLKSISIHSEKSQIERKNILKGLLEGDYEVVVSTGVLGRGLDLIS 513
Query: 539 IKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELVNSLIAAGQNVS 598
++ VVNFD+ MD +VH+IGR GR G ++GTA T + R ++ + G +
Sbjct: 514 VRLVVNFDMPSSMDEYVHQIGRVGRLG-QNGTAITFINNNSKRLFWDIAKRVKPTGSILP 572
Query: 599 MELMD 603
+L++
Sbjct: 573 PQLLN 577
>UNIPROTKB|P0A9P6 [details] [associations]
symbol:deaD "DeaD, DEAD-box RNA helicase" species:83333
"Escherichia coli K-12" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0030684 "preribosome" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0000027 "ribosomal large
subunit assembly" evidence=IMP] [GO:0004004 "ATP-dependent RNA
helicase activity" evidence=IDA] [GO:0006401 "RNA catabolic
process" evidence=IGI] [GO:0003724 "RNA helicase activity"
evidence=IDA] [GO:0070417 "cellular response to cold"
evidence=IEP;IMP] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR021046 Pfam:PF00270 Pfam:PF00271 Pfam:PF12343
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR EMBL:U18997 GO:GO:0003723 GO:GO:0006401
GO:GO:0070417 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 GO:GO:0000027 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268810 KO:K05592 InterPro:IPR005580
Pfam:PF03880 EMBL:M63288 EMBL:U03750 PIR:F65106 RefSeq:NP_417631.2
RefSeq:YP_491349.1 ProteinModelPortal:P0A9P6 SMR:P0A9P6
DIP:DIP-35752N IntAct:P0A9P6 MINT:MINT-1219396 SWISS-2DPAGE:P0A9P6
PaxDb:P0A9P6 PRIDE:P0A9P6 EnsemblBacteria:EBESCT00000000679
EnsemblBacteria:EBESCT00000014242 GeneID:12933435 GeneID:947674
KEGG:ecj:Y75_p3084 KEGG:eco:b3162 PATRIC:32121742 EchoBASE:EB0211
EcoGene:EG10215 OMA:ILFMTPR ProtClustDB:PRK11634
BioCyc:EcoCyc:EG10215-MONOMER BioCyc:ECOL316407:JW5531-MONOMER
Genevestigator:P0A9P6 GO:GO:0030684 Uniprot:P0A9P6
Length = 629
Score = 666 (239.5 bits), Expect = 2.0e-65, P = 2.0e-65
Identities = 148/357 (41%), Positives = 215/357 (60%)
Query: 226 TFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIV 285
TF D G ++ A++ GYEKP+ IQ + +P +L+GRD++G+A+TGSGKTAAF LP++
Sbjct: 7 TFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQ 66
Query: 286 HIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKS-HGIRVSAVYGGMSKLDQFKE 344
++ PEL+ P ++ APTRELA Q+ F+K G+ V A+YGG Q +
Sbjct: 67 NL--DPELK---APQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRA 121
Query: 345 LKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDR 404
L+ G +IV+ TPGRL+D LK L +S+++ LVLDEAD M +GF + +I+ QI
Sbjct: 122 LRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGH 181
Query: 405 QTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEKL 464
QT LFSATMP + ++ R + +P V + DI+Q + K L+ L
Sbjct: 182 QTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWG-MRKNEALVRFL 240
Query: 465 PGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVL 524
D ++ +K T+ E+ L + G+ +AAL+GD +QA R + L++ K G +L
Sbjct: 241 EAEDFDAAIIFVRTKNATL-EVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDIL 299
Query: 525 IATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEAR 581
IATDVAARGLD++ I VVN+DI D + +VHRIGRTGRAG + G A V +E R
Sbjct: 300 IATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAG-RAGRALLFVENRERR 355
>MGI|MGI:1915247 [details] [associations]
symbol:Ddx59 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 59"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 MGI:MGI:1915247
GO:GO:0005524 GO:GO:0046872 GO:GO:0003723 GO:GO:0005622
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR007529
Pfam:PF04438 PROSITE:PS51083 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HSSP:P09052
GeneTree:ENSGT00610000086076 CTD:83479 HOGENOM:HOG000006599
HOVERGEN:HBG106120 OMA:VTRPIID EMBL:AK004833 EMBL:AK013179
EMBL:AK076462 EMBL:BC023840 IPI:IPI00119928 IPI:IPI00226119
RefSeq:NP_080776.1 UniGene:Mm.385462 UniGene:Mm.486546
ProteinModelPortal:Q9DBN9 SMR:Q9DBN9 PhosphoSite:Q9DBN9
PRIDE:Q9DBN9 Ensembl:ENSMUST00000027655 GeneID:67997 KEGG:mmu:67997
UCSC:uc007cut.1 UCSC:uc007cuu.2 InParanoid:Q9DBN9 OrthoDB:EOG4K9BBZ
ChiTaRS:DDX59 NextBio:326168 Bgee:Q9DBN9 CleanEx:MM_DDX59
Genevestigator:Q9DBN9 Uniprot:Q9DBN9
Length = 619
Score = 662 (238.1 bits), Expect = 5.2e-65, P = 5.2e-65
Identities = 148/418 (35%), Positives = 234/418 (55%)
Query: 190 YQDSASISGMSEQDVMEYKKSLAIRVSGFDVPRPVKTFEDCGFSTQLMHAISKQGYEKPT 249
Y++ I + E + K+ L I V G DV RP+ FE CGF L + K GYE PT
Sbjct: 168 YKEHPFIVTLKEDQIETLKQQLGISVQGQDVARPIIDFEHCGFPETLNQNLKKSGYEVPT 227
Query: 250 SIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRE 309
IQ Q +P+ L GRDI+ A TGSGKTAAF+LP+I+ + ++ P +I PTRE
Sbjct: 228 PIQMQMIPVGLLGRDILASADTGSGKTAAFLLPVIIRAFSE-----DKTPSALILTPTRE 282
Query: 310 LAHQIYLETKKFAKS-HGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKAL 368
LA QI + K+ ++ + GG+ Q L+ +++IATPGRL+D++K ++
Sbjct: 283 LAIQIERQAKELMSGLPRMKTVLLVGGLPLPPQLYRLRQHVKVIIATPGRLLDIIKQSSV 342
Query: 369 TMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLAREILSDP 428
++S + +V+DEAD M +GF+ Q+ ++ D QT+L SAT+P +E+L ++L +P
Sbjct: 343 SLSGIKIVVVDEADTMLKMGFQQQVLDVLEHTPGDCQTILVSATIPDSIEQLTDQLLHNP 402
Query: 429 VRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEKLPGM-IDDGDVLVFASKKTTVDEIE 487
VR+ G+ + + Q++ + A+K L E L + VLVF K D +
Sbjct: 403 VRIITGDKNLPCASVRQIILWVEDPAKKKK-LFEILNDQKLFKPPVLVFVDCKLGADLL- 460
Query: 488 SQLAQK--GFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVNF 545
S+ QK G + ++H +K Q R +IL+ G Y V+++T V RGLD+ ++K VVNF
Sbjct: 461 SEAVQKITGLNSTSIHSEKSQVERRDILKGLLEGDYEVVVSTGVLGRGLDLVNVKLVVNF 520
Query: 546 DIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELVNSLIAAGQNVSMELMD 603
D+ MD +VH++GR GR G ++GTA T + R ++ + G + +L++
Sbjct: 521 DMPSSMDEYVHQVGRVGRLG-QNGTAITFINNNSKRLFWDVAKRVKPTGSILPPQLLN 577
>ZFIN|ZDB-GENE-050208-665 [details] [associations]
symbol:ddx59 "DEAD (Asp-Glu-Ala-Asp) box
polypeptide 59" species:7955 "Danio rerio" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 ZFIN:ZDB-GENE-050208-665 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR007529
Pfam:PF04438 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00610000086076 OMA:VTRPIID EMBL:BX649292
IPI:IPI00786758 Ensembl:ENSDART00000105600 Bgee:F1R8P9
Uniprot:F1R8P9
Length = 584
Score = 662 (238.1 bits), Expect = 5.2e-65, P = 5.2e-65
Identities = 157/421 (37%), Positives = 236/421 (56%)
Query: 190 YQDSASISGMSEQDVMEYKKSLAIRVSGFDVPRPVKTFEDCGFSTQLMHAISKQGYEKPT 249
Y+ A IS ++E+ + K L I G +V RPV F+ C F T L + GYE PT
Sbjct: 135 YKQDAFISELTEEQIERVKAELGIVSVGTEVCRPVIEFQHCRFPTVLERNLKAAGYEAPT 194
Query: 250 SIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRE 309
+Q Q +P+ L+GRD+I A TGSGKT AF+LP+++ + Q E P +I PTRE
Sbjct: 195 PVQMQMVPVGLTGRDVIATADTGSGKTVAFLLPVVMRAL-QSESASPSCPACLILTPTRE 253
Query: 310 LAHQIYLETKKFAKS-HGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKAL 368
LA QI + K+ + +R + + GGM Q LK +IVI TPGRL+++LK KA+
Sbjct: 254 LAIQIEEQAKELMRGLPNMRTALLVGGMPLPPQLHRLKHNIKIVIGTPGRLLEILKQKAV 313
Query: 369 TMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLAREILSDP 428
+ V +V+DEAD M +GF+ Q+ I+ Q+ D QTLL SAT+P ++LA + DP
Sbjct: 314 QLDHVRTVVVDEADTMLKMGFQQQVLDILEQVPEDHQTLLTSATIPTGTQQLAERLTHDP 373
Query: 429 VRVTVGEVGMANEDITQVVHVI--PSDAEKLPWLL--EKLPGMIDDGDVLVFASKKTTVD 484
V +T+G+ ++ Q+V + PS +KL +L EKL V+VF K D
Sbjct: 374 VTITIGQKNQPCANVRQIVLWVEEPSKKKKLFEILNDEKLY----QPPVVVFVDCKLGAD 429
Query: 485 EIESQLAQK--GFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSV 542
+ + QK A+H DK Q R +I++ G + V+I+T + RGLD+ ++K V
Sbjct: 430 LL-CEAVQKVMSLNTVAIHSDKMQWERNKIVKGLLEGQFDVVISTGILGRGLDLVNVKLV 488
Query: 543 VNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELVNSLIAAGQNVSMELM 602
+NFD+ +MD +VH+IGR GR G + GTA T + R E+V + G + +++
Sbjct: 489 INFDMPSNMDEYVHQIGRAGRLGHR-GTAITFMNNNNKRLFLEMVKRVKPTGSILPPQIL 547
Query: 603 D 603
+
Sbjct: 548 N 548
>UNIPROTKB|Q65N62 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:279010 "Bacillus licheniformis DSM 13 = ATCC 14580"
[GO:0003723 "RNA binding" evidence=ISS] [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=ISS] [GO:0005524 "ATP binding"
evidence=ISS] [GO:0043590 "bacterial nucleoid" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005737 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043590
HOGENOM:HOG000268810 OMA:IIDHINR HSSP:Q58083 EMBL:AE017333
EMBL:CP000002 RefSeq:YP_006711973.1 RefSeq:YP_077785.1
ProteinModelPortal:Q65N62 STRING:Q65N62 DNASU:3098967
EnsemblBacteria:EBBACT00000055567 EnsemblBacteria:EBBACT00000059427
GeneID:3030407 GeneID:3098967 GenomeReviews:AE017333_GR
GenomeReviews:CP000002_GR KEGG:bld:BLi00546 KEGG:bli:BL02197
PATRIC:18946609 ProtClustDB:CLSK886742
BioCyc:BLIC279010:GJ2P-538-MONOMER Uniprot:Q65N62
Length = 487
Score = 659 (237.0 bits), Expect = 1.1e-64, P = 1.1e-64
Identities = 146/356 (41%), Positives = 210/356 (58%)
Query: 226 TFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIV 285
TF+D S+ L AI + G+E+ T IQ Q +P+ L+ +D+IG A+TG+GKTAAF +P++
Sbjct: 4 TFQDFQLSSDLTKAIKRMGFEEATPIQAQTIPLGLANKDVIGQAQTGTGKTAAFGIPLVE 63
Query: 286 HIM-DQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKE 344
I + P +Q ++ APTRELA Q+ E K + RV +YGG Q +
Sbjct: 64 KINPESPNIQ------AIVIAPTRELAIQVSEELYKIGQDKRARVLPIYGGQDIGRQIRA 117
Query: 345 LKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDR 404
LK I++ TPGRL+D + + + + V +VLDEAD M ++GF I SI+ + +
Sbjct: 118 LKKNPHIIVGTPGRLLDHINRRTMRLQTVNTVVLDEADEMLNMGFIEDIESILSNVPAEH 177
Query: 405 QTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEKL 464
QTLLFSATMP ++++A +++P V V M +I Q ++ + +K L L
Sbjct: 178 QTLLFSATMPAPIKRIAERFMTNPEHVKVKAKEMTVSNIQQF-YLEVHERKKFDTLTRLL 236
Query: 465 PGMIDDGDV-LVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHV 523
I ++ +VF K VDE+ L +G+ A +HGD QA RM L+KFK G V
Sbjct: 237 D--IQSPELAIVFGRTKRRVDELTEALNLRGYTAEGIHGDLTQAKRMVALRKFKQGAIEV 294
Query: 524 LIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKE 579
L+ATDVAARGLDI + V NFD+ +D + +VHRIGRTGRAG K G A T +T +E
Sbjct: 295 LVATDVAARGLDISGVTHVYNFDVPQDPESYVHRIGRTGRAG-KTGMAMTFITPRE 349
>TIGR_CMR|CPS_1590 [details] [associations]
symbol:CPS_1590 "ATP-dependent RNA helicase, DEAD box
family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 RefSeq:YP_268332.1 ProteinModelPortal:Q485D3
STRING:Q485D3 GeneID:3522084 KEGG:cps:CPS_1590 PATRIC:21466379
OMA:AISECGY ProtClustDB:CLSK768209
BioCyc:CPSY167879:GI48-1671-MONOMER Uniprot:Q485D3
Length = 455
Score = 546 (197.3 bits), Expect = 1.4e-64, Sum P(2) = 1.4e-64
Identities = 121/290 (41%), Positives = 180/290 (62%)
Query: 302 VICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLID 361
+I PTRELA+Q+ K+F++ I+ VYGG Q K LK G ++++ATPGRL++
Sbjct: 95 LILTPTRELANQVADNIKQFSQYLPIKSGVVYGGGKMASQTKMLKQGLDVLVATPGRLLE 154
Query: 362 MLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLA 421
L ++ + +S+V +LVLDEADRM D+GF I ++ ++ QTL+FSAT +V+ LA
Sbjct: 155 HLALRNVDLSQVKFLVLDEADRMLDMGFLTDIEKLLLAVKHKHQTLMFSATFSDRVKSLA 214
Query: 422 REILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEKLPGMIDDGDVLVFASKKT 481
++L P ++V + + I Q V+ + + ++ LL +L G+ + VLVFA K
Sbjct: 215 NQLLKSPKTISVSKENTTSGKIKQAVYWVTEERKRE--LLSELIGVNNWQQVLVFAGTKE 272
Query: 482 TVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKS 541
+ + + +L G KAA HGDK Q +R + L++F G VL+ATDVAARGLDI +
Sbjct: 273 SANTLAKELKLDGIKAALCHGDKTQGARNKALEQFSEGKVRVLVATDVAARGLDIPDLAF 332
Query: 542 VVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELVNSLI 591
VVNF + + +VHR+GRTGRAG K GTA +LV+ K+ RF E + LI
Sbjct: 333 VVNFHLPFLPEDYVHRVGRTGRAG-KSGTAISLVSPKDERFL-ENIEQLI 380
Score = 130 (50.8 bits), Expect = 1.4e-64, Sum P(2) = 1.4e-64
Identities = 25/57 (43%), Positives = 38/57 (66%)
Query: 228 EDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMI 284
+ G S L+ A+ GY+ T IQ +A+P+I G D++ A+TG+GKTAAF LP++
Sbjct: 4 DSIGLSADLLKAVKACGYKNLTPIQQEAIPVIRQGVDLLASAQTGTGKTAAFSLPIL 60
>TIGR_CMR|DET_0183 [details] [associations]
symbol:DET_0183 "ATP-dependent RNA helicase, DEAD/DEAH box
family" species:243164 "Dehalococcoides ethenogenes 195"
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
[GO:0008152 "metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000027 GenomeReviews:CP000027_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 RefSeq:YP_180931.1 ProteinModelPortal:Q3ZA18
STRING:Q3ZA18 GeneID:3230538 KEGG:det:DET0183 PATRIC:21607443
OMA:NFAPAVM ProtClustDB:CLSK837629
BioCyc:DETH243164:GJNF-183-MONOMER Uniprot:Q3ZA18
Length = 560
Score = 656 (236.0 bits), Expect = 2.3e-64, P = 2.3e-64
Identities = 149/393 (37%), Positives = 236/393 (60%)
Query: 226 TFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIV 285
+FE F+ +M + GY++PT IQ QA+P IL G D+IG+A+TG+GKTAA+ LP+I
Sbjct: 2 SFESFNFAPAVMAGVRACGYQEPTPIQAQAIPPILEGHDVIGLAQTGTGKTAAYALPVIQ 61
Query: 286 HIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKEL 345
++ P + ++ APTRELA QI + + IR ++YGG++ Q + L
Sbjct: 62 KMLSTPRGRVRT----LVLAPTRELACQIAESFRSLGQRARIRECSIYGGVNMDQQIRRL 117
Query: 346 KAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQ 405
++G ++V+A PGRL+D + + + V L++DEADRMFD+GF+P I+SI+ + Q
Sbjct: 118 RSGVDVVVACPGRLLDHIWRGTIDICGVETLIIDEADRMFDMGFQPDIQSILKCLVQPHQ 177
Query: 406 TLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEKLP 465
TLLFSATMP +V KL E ++PV + +G A+ ++ V+ + + +K P L+E L
Sbjct: 178 TLLFSATMPPEVRKLTLETQTNPVTIQIGTQAPASS-VSHSVYPVKNH-QKTPLLIEILK 235
Query: 466 GMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLI 525
+ VL+FA K + + ++++ GF A+L G+ Q R +++ F+ G + +L+
Sbjct: 236 -TTETKSVLIFARTKYGAENLADEISRAGFTTASLQGNLSQNRRHAVMEGFRRGNFKILV 294
Query: 526 ATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEA---RF 582
ATD+AARGLDI I V+N+D+ + + HRIGRTGR D+ G A +LVT ++ R
Sbjct: 295 ATDIAARGLDIDHISHVINYDMPDTPEDYTHRIGRTGRF-DRTGQALSLVTGRDGDMVRD 353
Query: 583 AGELVNSLIAAGQNVSMELMDLAM--KDGRFRS 613
+L+NS I Q + ++ D A DG+ S
Sbjct: 354 IQKLINSPI---QRLRVDGFDYATTRNDGQNHS 383
>UNIPROTKB|Q0C4B9 [details] [associations]
symbol:HNE_0695 "Putative ATP-dependent RNA helicase RhlE"
species:228405 "Hyphomonas neptunium ATCC 15444" [GO:0006139
"nucleobase-containing compound metabolic process" evidence=ISS]
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:CP000158
GenomeReviews:CP000158_GR GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807
RefSeq:YP_759424.1 ProteinModelPortal:Q0C4B9 STRING:Q0C4B9
GeneID:4287361 KEGG:hne:HNE_0695 PATRIC:32214196 OMA:LPMITIL
BioCyc:HNEP228405:GI69-738-MONOMER Uniprot:Q0C4B9
Length = 536
Score = 654 (235.3 bits), Expect = 3.7e-64, P = 3.7e-64
Identities = 148/367 (40%), Positives = 220/367 (59%)
Query: 226 TFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIV 285
TF D G + ++ A+++ GY PT IQ +A+P IL G D+ G+A+TG+GKTAAFVLPMI
Sbjct: 5 TFADFGLAENILKAVTESGYTIPTPIQREAIPHILMGGDVTGVAQTGTGKTAAFVLPMIQ 64
Query: 286 HIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKEL 345
+ + P +I PTRELA Q+ +K+ K + ++ + GG+S +Q L
Sbjct: 65 RL--STGRARARMPRCLILCPTRELAAQVAENFEKYGKYLKLTMALLIGGVSFKEQETLL 122
Query: 346 KAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQ 405
+ G +++IATPGRL+D L M V L++DEADRM D+GF P I I ++ +RQ
Sbjct: 123 QRGVDVLIATPGRLMDQFDRGKLLMMGVETLIIDEADRMLDMGFIPDIEKICAKLPANRQ 182
Query: 406 TLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPS-DAEKLPWLLEKL 464
TLLFSAT P +++LA+ DP ++ V E I+Q V +P+ D + L ++
Sbjct: 183 TLLFSATFPTDIQRLAKTFQKDPKKIEVTRPAQTAETISQFVVKLPTNDGKARRTALRRV 242
Query: 465 PGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVL 524
+ + +VF ++K VD + + L + G AA +HGD Q+ R E LQ+F+ G +L
Sbjct: 243 IEATNVKNGIVFCNRKVEVDIVAASLTKHGHDAAPIHGDLPQSVRSETLQRFRDGKLKLL 302
Query: 525 IATDVAARGLDIKSIKSVVNFDIA-RDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFA 583
+A+DVAARGLDI + V NF +D D +VHRIGRTGRAG + G +YT+VT + +
Sbjct: 303 VASDVAARGLDIPDVGHVFNFGPPPKDED-YVHRIGRTGRAG-RTGESYTVVTPADDKSW 360
Query: 584 GELVNSL 590
G +V +
Sbjct: 361 GFVVKMI 367
>TIGR_CMR|CPS_1125 [details] [associations]
symbol:CPS_1125 "ATP-dependent RNA helicase, DEAD box
family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 KO:K11927 RefSeq:YP_267868.1
ProteinModelPortal:Q486Z7 STRING:Q486Z7 GeneID:3520292
KEGG:cps:CPS_1125 PATRIC:21465509 OMA:AYSKYLR
BioCyc:CPSY167879:GI48-1206-MONOMER Uniprot:Q486Z7
Length = 466
Score = 634 (228.2 bits), Expect = 4.8e-64, Sum P(2) = 4.8e-64
Identities = 136/358 (37%), Positives = 210/358 (58%)
Query: 223 PVKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLP 282
P K F D G S L+ A+ +GYE P+ IQ QA+P ++SGRD++ A+TG+GKTA F LP
Sbjct: 5 PTK-FTDLGLSEALLKAVRDKGYETPSPIQAQAIPAVISGRDVMAAAQTGTGKTAGFTLP 63
Query: 283 MIVHIMDQPELQKEEGPI-GVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQ 341
++ + + + +I PTRELA QI + + K + V+GG+ Q
Sbjct: 64 LLQRLSSSKGNKVSSNNVRALILTPTRELAAQISESIEVYGKYLNLHSMVVFGGVKINPQ 123
Query: 342 FKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIR 401
L+ G ++++ATPGRL+D+ +A+ S++ +LDEADRM D+GF I+ ++ +
Sbjct: 124 IARLRQGVDVLVATPGRLLDLYNQRAVKFSQLEVFILDEADRMLDMGFIRDIKKLMTALP 183
Query: 402 PDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLL 461
DRQ LLFSAT ++ LA+ ++++P+ ++V E +TQ + + D ++ P +L
Sbjct: 184 KDRQNLLFSATFSPEIRALAKGMVNNPLEISVDAENSTAEKVTQWLTAV--DKKRKPAVL 241
Query: 462 EKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVY 521
L + VLVF K +++ L +G AAA+HG+K Q +R + L FK G
Sbjct: 242 THLIKENNWQQVLVFTKTKHGANKLTKHLEAEGLTAAAIHGNKSQGARTKALAAFKDGSV 301
Query: 522 HVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKE 579
+L+ATD+AARG+DI + VVNFD+ + +VHRIGRT RAG+ G A +LV E
Sbjct: 302 KILVATDIAARGIDIDLLPQVVNFDLPNVPEDYVHRIGRTARAGNT-GQALSLVCADE 358
Score = 37 (18.1 bits), Expect = 4.8e-64, Sum P(2) = 4.8e-64
Identities = 5/14 (35%), Positives = 10/14 (71%)
Query: 212 AIRVSGFDVPRPVK 225
A+R G++ P P++
Sbjct: 20 AVRDKGYETPSPIQ 33
>TIGR_CMR|CPS_1726 [details] [associations]
symbol:CPS_1726 "RNA helicase DeaD" species:167879
"Colwellia psychrerythraea 34H" [GO:0003724 "RNA helicase activity"
evidence=ISS] [GO:0009409 "response to cold" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:CP000083
GenomeReviews:CP000083_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268810 KO:K05592 InterPro:IPR005580
Pfam:PF03880 RefSeq:YP_268464.1 ProteinModelPortal:Q484Q1
STRING:Q484Q1 GeneID:3523325 KEGG:cps:CPS_1726 PATRIC:21466621
OMA:WIVKGVE ProtClustDB:CLSK741103
BioCyc:CPSY167879:GI48-1803-MONOMER Uniprot:Q484Q1
Length = 611
Score = 627 (225.8 bits), Expect = 4.8e-64, Sum P(2) = 4.8e-64
Identities = 143/361 (39%), Positives = 213/361 (59%)
Query: 221 PRPVKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFV 280
P V F G L+ A+ G+ T IQ +P +L+G+D++G A+TG+GKTAAF
Sbjct: 12 PEAV-AFASLGLPENLLSAVLSIGFTSATDIQALTIPPLLAGKDVLGEAQTGTGKTAAFG 70
Query: 281 LPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKS-HGIRVSAVYGGMSKL 339
LP + I ++K P ++ APTRELA Q+ + F K G+RV+ +YGG S
Sbjct: 71 LPALAKI--DTSIKK---PQLMVLAPTRELAMQVAEAIESFGKDMKGLRVATLYGGQSYG 125
Query: 340 DQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQ 399
QF++L+ G ++V+ TPGRL+D L+ K+L + + VLDEAD M ++GF I+ I+
Sbjct: 126 PQFQQLERGAQVVVGTPGRLMDHLRRKSLKLDELRVCVLDEADEMLNMGFLEDIQWILDH 185
Query: 400 IRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPW 459
I Q LFSATMP + K+A L DP + V V A +ITQ + S K+
Sbjct: 186 IPKTAQMCLFSATMPPAIRKIANRFLKDPEHIKVAAVKKAKANITQYAWKV-SGITKMT- 243
Query: 460 LLEKLPGMIDDGDVLVFA-SKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKS 518
LE++ +++ +++F ++ TVD I +L + G+ A AL+GD +QA R + + KS
Sbjct: 244 ALERIAEVVEYDAMIIFVRTRNDTVD-IAEKLERAGYPALALNGDLNQAQRERCIDQMKS 302
Query: 519 GVYHVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQK 578
G +L+ATDV ARGLDI I V+N+D+ D + +VHRIGRTGRAG ++G + V +
Sbjct: 303 GKSSILVATDVVARGLDIPRISLVINYDLPGDNEAYVHRIGRTGRAG-REGMSIAFVRPR 361
Query: 579 E 579
E
Sbjct: 362 E 362
Score = 44 (20.5 bits), Expect = 4.8e-64, Sum P(2) = 4.8e-64
Identities = 21/65 (32%), Positives = 31/65 (47%)
Query: 541 SVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELVNSLIAAGQNVSME 600
+V+N+D+ D+ RI RT K +V K+ E+V + AA VSM
Sbjct: 376 TVLNYDLPNIQDIGKIRIERTRVEVAK------IVADKDISSMREIVEGM-AAESEVSM- 427
Query: 601 LMDLA 605
+DLA
Sbjct: 428 -IDLA 431
>ASPGD|ASPL0000013201 [details] [associations]
symbol:AN4233 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0003723 EMBL:BN001302
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0008026 EMBL:AACD01000068 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268802 KO:K14777 OMA:IFIPSKF
RefSeq:XP_661837.1 ProteinModelPortal:Q5B5E7 SMR:Q5B5E7
STRING:Q5B5E7 EnsemblFungi:CADANIAT00004427 GeneID:2873652
KEGG:ani:AN4233.2 OrthoDB:EOG4ZPJ3P Uniprot:Q5B5E7
Length = 465
Score = 652 (234.6 bits), Expect = 6.0e-64, P = 6.0e-64
Identities = 149/367 (40%), Positives = 208/367 (56%)
Query: 214 RVSGFDVPRPVKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGS 273
+ SG + P P K+F++ G QL A GY+ PT IQ QA+P+ L GRD+IG+A+TGS
Sbjct: 36 QTSG-EEPAPAKSFKELGIIDQLCEACENMGYKAPTPIQSQAIPLALEGRDVIGLAETGS 94
Query: 274 GKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVY 333
GKTAAF LPM+ +M+ P+ G++ APTRELA+QI + + G+R + +
Sbjct: 95 GKTAAFALPMLQALMEAPQTL-----FGLVLAPTRELAYQISQAFETLGSTIGVRCAVIV 149
Query: 334 GGMSKLDQFKELKAGCEIVIATPGRLIDMLK-MKALTMSRVTYLVLDEADRMFDLGFEPQ 392
GGM + Q L I++ATPGRL+D L+ K ++ + YL +DEADR+ D+ F
Sbjct: 150 GGMDMVAQSIALGKKPHIIVATPGRLLDHLENTKGFSLRNLKYLAIDEADRLLDMDFGES 209
Query: 393 IRSIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPS 452
+ I+ + R T LFSATM KVE L R LS+PVRV+V + IP
Sbjct: 210 LDKIIRILPRTRHTYLFSATMSTKVESLQRASLSNPVRVSVSSKYQTVSTLQSSYICIPH 269
Query: 453 DAEKL--PWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRM 510
+ L +LL + G ++F + + L GF A LHG Q++R+
Sbjct: 270 KHKNLYLVYLLNEFAGQ----SAIIFTTTVHETQRVAFMLRALGFGAIPLHGQLSQSARL 325
Query: 511 EILQKFKSGVYHVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGT 570
L KF+S +L+ATDVAARGLDI S+ V NFD+ D ++HR+GRT RAG K G
Sbjct: 326 GALGKFRSRSRDILVATDVAARGLDIPSVDVVFNFDLPMDSKTYIHRVGRTARAG-KSGV 384
Query: 571 AYTLVTQ 577
A + VTQ
Sbjct: 385 AISFVTQ 391
>UNIPROTKB|Q5L3G9 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:235909 "Geobacillus kaustophilus HTA426" [GO:0003723 "RNA
binding" evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISS] [GO:0005524 "ATP binding" evidence=ISS]
[GO:0043590 "bacterial nucleoid" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0043590 HOGENOM:HOG000268810 KO:K05592
OMA:IIDHINR HSSP:Q58083 EMBL:BA000043 RefSeq:YP_146079.1
ProteinModelPortal:Q5L3G9 GeneID:3184893 GenomeReviews:BA000043_GR
KEGG:gka:GK0226 PATRIC:21961545 ProtClustDB:CLSK712472
BioCyc:GKAU235909:GJO7-260-MONOMER Uniprot:Q5L3G9
Length = 467
Score = 652 (234.6 bits), Expect = 6.0e-64, P = 6.0e-64
Identities = 142/354 (40%), Positives = 208/354 (58%)
Query: 226 TFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIV 285
TF++ G S ++M AI + G+E+ T IQ + +P+ L +D+IG A+TG+GKTAAF +P++
Sbjct: 3 TFQELGLSQEVMKAIERMGFEETTPIQAKTIPLSLQNKDVIGQAQTGTGKTAAFGIPIVE 62
Query: 286 HIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKEL 345
+ K ++ APTRELA Q+ E K +RV +YGG Q + L
Sbjct: 63 KVN-----VKNSAVQALVVAPTRELAIQVSEELYKIGAVKRVRVLPIYGGQDIERQIRAL 117
Query: 346 KAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQ 405
K +++ TPGR+ID + L + V +VLDEAD M ++GF I +I+ + +RQ
Sbjct: 118 KKHPHVIVGTPGRIIDHINRGTLRLEHVHTVVLDEADEMLNMGFIEDIEAILSHVPAERQ 177
Query: 406 TLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEKLP 465
TLLFSATMP + ++A +++P V V M +I Q ++ + +K +L +L
Sbjct: 178 TLLFSATMPDPIRRIAERFMNEPELVKVKAKEMTVPNIQQY-YLEVHEKKKFD-ILTRLL 235
Query: 466 GMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLI 525
+ +VF K VDE+ L +G+ A +HGD QA R+ +L+KFK G +L+
Sbjct: 236 DIQAPELAIVFGRTKRRVDELAEALNLRGYAAEGIHGDLSQAKRLSVLRKFKEGAIEILV 295
Query: 526 ATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKE 579
ATDVAARGLDI + V NFDI +D + +VHRIGRTGRAG K G A T VT +E
Sbjct: 296 ATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAG-KTGVAMTFVTPRE 348
>TIGR_CMR|GSU_0189 [details] [associations]
symbol:GSU_0189 "ATP-dependent RNA helicase DbpA"
species:243231 "Geobacter sulfurreducens PCA" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] [GO:0042254 "ribosome
biogenesis" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
EMBL:AE017180 GenomeReviews:AE017180_GR InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268809 KO:K05591 ProtClustDB:PRK11776
InterPro:IPR005580 Pfam:PF03880 RefSeq:NP_951250.1
ProteinModelPortal:Q74GQ7 GeneID:2687824 KEGG:gsu:GSU0189
PATRIC:22023124 OMA:VAIASHC BioCyc:GSUL243231:GH27-128-MONOMER
Uniprot:Q74GQ7
Length = 460
Score = 651 (234.2 bits), Expect = 7.6e-64, P = 7.6e-64
Identities = 146/374 (39%), Positives = 226/374 (60%)
Query: 225 KTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMI 284
K F ++ ++ GY + T IQ +LP+IL+G+D+I AKTGSGKTAAF + ++
Sbjct: 4 KAFSSLRLKAPMLRNLASLGYAEMTPIQAHSLPLILAGKDVIARAKTGSGKTAAFGIGLL 63
Query: 285 VHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAK-SHGIRVSAVYGGMSKLDQFK 343
+ D + + V+C PTRELA Q+ E ++ A+ + I++ + GG+ Q
Sbjct: 64 SRL-DALSFRVQAL---VLC-PTRELADQVGKELRRLARFTDNIKILTICGGVPFGPQLG 118
Query: 344 ELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPD 403
L+ G +VI TPGRL+D L+ +L +S + LVLDEADRM D+GF+ I +++ P
Sbjct: 119 SLEHGAHVVIGTPGRLLDHLRRGSLDLSALRTLVLDEADRMLDMGFQDDISALIAAAPPK 178
Query: 404 RQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEK 463
RQTLLFSAT P + ++ + +PV V+V EV I QV + + S +++ +E+
Sbjct: 179 RQTLLFSATYPDSIAAMSAGVQREPVEVSVDEVH-GEGAIEQVFYEVDS-GQRIE-AVER 235
Query: 464 LPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHV 523
+ G L+F + K E+ + LA +G+ A A+HGD DQ R +L +F + V
Sbjct: 236 ILGHYRPESALIFCNTKLECQEVANALAVRGYAALAIHGDLDQRERDRVLVRFANRSASV 295
Query: 524 LIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFA 583
L+ATDVAARGLDIK + +V+N+++ R+ ++H HRIGRTGRAG++ G A +LVT +E+R
Sbjct: 296 LVATDVAARGLDIKELSAVINYELTRNPEVHTHRIGRTGRAGER-GLAVSLVTPRESRLI 354
Query: 584 GELVN---SLIAAG 594
+ + S+IA G
Sbjct: 355 AAIADVPGSIIARG 368
>UNIPROTKB|Q0C354 [details] [associations]
symbol:rhlE "ATP-dependent RNA helicase RhlE"
species:228405 "Hyphomonas neptunium ATCC 15444" [GO:0006139
"nucleobase-containing compound metabolic process" evidence=ISS]
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 EMBL:CP000158
GenomeReviews:CP000158_GR GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807 KO:K11927
RefSeq:YP_759839.1 ProteinModelPortal:Q0C354 STRING:Q0C354
GeneID:4290097 KEGG:hne:HNE_1118 PATRIC:32215041 OMA:KHGSEKL
BioCyc:HNEP228405:GI69-1155-MONOMER Uniprot:Q0C354
Length = 464
Score = 625 (225.1 bits), Expect = 1.3e-63, Sum P(2) = 1.3e-63
Identities = 134/353 (37%), Positives = 208/353 (58%)
Query: 227 FEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVH 286
F+ G + +++ +++K GY PT IQ QA+P+++ GRDI+G+A+TG+GKT AF P++
Sbjct: 9 FQSLGLTGRILTSLTKAGYTAPTPIQEQAIPLVIQGRDIVGLAQTGTGKTLAFAAPILDR 68
Query: 287 IMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELK 346
+ G ++ APTRELA QI + +RV V GG Q ++L+
Sbjct: 69 LSRNASPAPVRGTRVLVLAPTRELAGQIATSFGTYGAGLNLRVVMVCGGAKIGGQIRQLE 128
Query: 347 AGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQT 406
G I++ATPGRLID+++ +A+++ +V L+LDEAD+M DLGF +R+I + RQT
Sbjct: 129 RGAHILVATPGRLIDLMEQRAVSLDKVETLILDEADQMLDLGFIHALRAIAKNVPSKRQT 188
Query: 407 LLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEKLPG 466
L FSATMP+ VE LA L +P V+V I Q V + EK L+EK+
Sbjct: 189 LFFSATMPKAVESLAATFLRNPAEVSVAPPATTAGRIEQRVCFV-EQPEKASLLIEKIRD 247
Query: 467 MIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIA 526
+ +VF K D + +LA+ + A+HG+K Q+ R + L+ FK+G +L+A
Sbjct: 248 P-ELRSAIVFTRTKHGADGVVKRLAKADIDSVAIHGNKSQSQREKALEAFKAGRVPILVA 306
Query: 527 TDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKE 579
TD+AARG+ + ++ V+N+D+ + VHRIGRT RAG+ G A + ++ E
Sbjct: 307 TDIAARGIHVDALTHVINYDLPDVPEQFVHRIGRTARAGNS-GVAISFCSRDE 358
Score = 42 (19.8 bits), Expect = 1.3e-63, Sum P(2) = 1.3e-63
Identities = 13/32 (40%), Positives = 15/32 (46%)
Query: 711 SGGSIGGDVNGTQTTGLTGFVSGGSIGGEMSG 742
+GG GG +G G G SG GG SG
Sbjct: 398 NGGGRGGARSGG---GYQGQSSGSQSGGSHSG 426
Score = 40 (19.1 bits), Expect = 2.0e-63, Sum P(2) = 2.0e-63
Identities = 9/20 (45%), Positives = 12/20 (60%)
Query: 726 GLTGFVSGGSIGGEMSGTQT 745
G G SGG G+ SG+Q+
Sbjct: 401 GRGGARSGGGYQGQSSGSQS 420
>UNIPROTKB|Q4K8U0 [details] [associations]
symbol:deaD "Cold-shock DEAD box protein A" species:220664
"Pseudomonas protegens Pf-5" [GO:0003723 "RNA binding"
evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] [GO:0006950 "response to stress"
evidence=ISS] [GO:0008026 "ATP-dependent helicase activity"
evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0006950
GO:GO:0006355 GO:GO:0003723 EMBL:CP000076 GenomeReviews:CP000076_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268810 KO:K05592 InterPro:IPR005580 Pfam:PF03880
OMA:LPQGMPK RefSeq:YP_261343.1 ProteinModelPortal:Q4K8U0
GeneID:3477377 KEGG:pfl:PFL_4251 PATRIC:19877913
ProtClustDB:CLSK867560 BioCyc:PFLU220664:GIX8-4286-MONOMER
Uniprot:Q4K8U0
Length = 557
Score = 647 (232.8 bits), Expect = 2.0e-63, P = 2.0e-63
Identities = 165/397 (41%), Positives = 233/397 (58%)
Query: 226 TFEDCGFSTQLMH-----AISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFV 280
T E GF+ +H A+ GYE+P++IQ Q++PIIL+G D+IG A+TG+GKTAAF
Sbjct: 2 TQEIGGFAALELHPNIVAAVVATGYEEPSAIQQQSIPIILAGHDMIGQAQTGTGKTAAFA 61
Query: 281 LPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSH-GIRVSAVYGGMSKL 339
LP I+H +D P K E P +I APTRELA Q+ + +AK G+ V AVYGG
Sbjct: 62 LP-ILHRID-PS--KRE-PQALILAPTRELALQVATAFETYAKQMPGVTVVAVYGGAPMG 116
Query: 340 DQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQ 399
Q K ++ G +IV+ATPGRL D L+ ++ V +LVLDEAD M LGF + I
Sbjct: 117 PQLKAIRNGAQIVVATPGRLCDHLRRDEKVLATVNHLVLDEADEMLKLGFMDDLEVIFKA 176
Query: 400 IRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPW 459
+ RQT+LFSAT+P+ + +A L DP V + I Q H++ +K
Sbjct: 177 MPETRQTVLFSATLPQSIRAIAERHLKDPKHVKIQSKTQTVTAIEQA-HLLVHADQKTSA 235
Query: 460 LLEKLPGMIDDGDVLVF--ASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFK 517
+L L ++D D L+ +K+ T+D + S L KG+KAAAL+GD Q R ++ K
Sbjct: 236 VLSLLE--VEDFDALIMFVRTKQATLD-LASALEAKGYKAAALNGDIAQNQRERVIDSLK 292
Query: 518 SGVYHVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQ 577
G +++ATDVAARGLD+ I V N D+ D + +VHRIGRTGRAG ++G A LVT
Sbjct: 293 DGRLDIVVATDVAARGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAG-REGRALLLVTP 351
Query: 578 KEARFAGELVNSLIAAGQNVS-MELMDL-AMKDGRFR 612
+E R +++ + GQ V+ + L D A+ D R +
Sbjct: 352 RERRML-QVIERV--TGQKVAEVRLPDAQAVLDARIK 385
>UNIPROTKB|Q11039 [details] [associations]
symbol:deaD "Cold-shock DEAD box protein A homolog"
species:1773 "Mycobacterium tuberculosis" [GO:0005618 "cell wall"
evidence=IDA] [GO:0005829 "cytosol" evidence=IDA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005829 GO:GO:0005524 GO:GO:0005618
GO:GO:0006355 EMBL:AE000516 GenomeReviews:AE000516_GR
GenomeReviews:AL123456_GR EMBL:BX842576 GO:GO:0006351 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268810 KO:K05592 InterPro:IPR005580 Pfam:PF03880
PIR:E70752 RefSeq:NP_215769.1 RefSeq:NP_335736.1
RefSeq:YP_006514628.1 ProteinModelPortal:Q11039 SMR:Q11039
PRIDE:Q11039 EnsemblBacteria:EBMYCT00000002426
EnsemblBacteria:EBMYCT00000070115 GeneID:13319832 GeneID:887069
GeneID:924778 KEGG:mtc:MT1292 KEGG:mtu:Rv1253 KEGG:mtv:RVBD_1253
PATRIC:18124606 TubercuList:Rv1253 OMA:LPQGMPK
ProtClustDB:CLSK791051 Uniprot:Q11039
Length = 563
Score = 623 (224.4 bits), Expect = 2.6e-63, Sum P(2) = 2.6e-63
Identities = 139/355 (39%), Positives = 204/355 (57%)
Query: 226 TFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIV 285
TF D +++ AI GYE PT+IQ +P +++G D++G+A+TG+GKTAAF +PM+
Sbjct: 14 TFADLQIHPRVLRAIGDVGYESPTAIQAATIPALMAGSDVVGLAQTGTGKTAAFAIPMLS 73
Query: 286 HIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKF-AKSHGIRVSAVYGGMSKLDQFKE 344
I ++ + P ++ PTRELA Q+ ++ A + V +YGG S Q
Sbjct: 74 KI----DITSKV-PQALVLVPTRELALQVAEAFGRYGAYLSQLNVLPIYGGSSYAVQLAG 128
Query: 345 LKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDR 404
L+ G ++V+ TPGR+ID L+ L +SRV +LVLDEAD M +GF + I+ + +
Sbjct: 129 LRRGAQVVVGTPGRMIDHLERATLDLSRVDFLVLDEADEMLTMGFADDVERILSETPEYK 188
Query: 405 QTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEKL 464
Q LFSATMP + KL+ + L DP VT E+I+Q + + L +LE
Sbjct: 189 QVALFSATMPPAIRKLSAKYLHDPFEVTCKAKTAVAENISQSYIQVARKMDALTRVLEVE 248
Query: 465 PGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVL 524
P ++VF K +EI +L +GF AAA+ GD QA R + + G +L
Sbjct: 249 PFEA----MIVFVRTKQATEEIAEKLRARGFSAAAISGDVPQAQRERTITALRDGDIDIL 304
Query: 525 IATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKE 579
+ATDVAARGLD++ I V+N+DI D + +VHRIGRTGRAG + G A V+ +E
Sbjct: 305 VATDVAARGLDVERISHVLNYDIPHDTESYVHRIGRTGRAG-RSGAALIFVSPRE 358
Score = 41 (19.5 bits), Expect = 2.6e-63, Sum P(2) = 2.6e-63
Identities = 9/28 (32%), Positives = 16/28 (57%)
Query: 576 TQKEARFAGELVNSLIAAGQNVSMELMD 603
TQ+ A+FA + N+L G + L++
Sbjct: 386 TQRVAKFADSITNALGGPGIELFRRLVE 413
>UNIPROTKB|Q8ECL2 [details] [associations]
symbol:SO_3125 "ATP-dependent RNA helicase DEAD box family"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
ProtClustDB:CLSK907013 RefSeq:NP_718686.1 ProteinModelPortal:Q8ECL2
GeneID:1170814 KEGG:son:SO_3125 PATRIC:23525896 OMA:AHLIKQH
Uniprot:Q8ECL2
Length = 427
Score = 644 (231.8 bits), Expect = 4.2e-63, P = 4.2e-63
Identities = 140/365 (38%), Positives = 215/365 (58%)
Query: 224 VKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPM 283
V +F + G L + +++ GY PT +Q +P +LSGRD++ A TGSGKTAAF LP+
Sbjct: 8 VASFAELGIIAPLGNRLTELGYVSPTPVQAATIPAVLSGRDVLAGANTGSGKTAAFALPL 67
Query: 284 IVHIMDQPELQKEEGPIG-VICAPTRELAHQIYLETKKFAKSH--G-IRVSAVYGGMSKL 339
+ + + K G + ++ PTRELA Q+ +A SH G +++ A +GG+S
Sbjct: 68 LQRLSEAKSADKSAGVVRCLVLVPTRELAQQVADSFLSYA-SHFNGQLKIVAAFGGVSVN 126
Query: 340 DQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQ 399
Q + L+AG ++++ATPGRL+D+L AL +++V+ VLDEADRM LGF ++ ++
Sbjct: 127 LQMQSLRAGADVLVATPGRLLDLLASNALKLTQVSAFVLDEADRMLSLGFTEELEQVLAA 186
Query: 400 IRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPW 459
+ +QTLLFSAT P +V L ++L P+ + + ++ T VI + E+
Sbjct: 187 LPRQKQTLLFSATFPEEVRALTTKLLHQPLEYHL----QSEQESTIEQRVITVNREQKTA 242
Query: 460 LLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSG 519
LL L L+F S K T + + +L+++G A HGDK Q +R +L FK+G
Sbjct: 243 LLAHLIKQHQWSQALIFVSAKNTCNHLAQKLSKRGISAEVFHGDKAQGARTRVLDGFKNG 302
Query: 520 VYHVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKE 579
VLIATD+AARG+DI + V+NFD+ R ++HRIGR+GRAG+ G A TL++ +E
Sbjct: 303 EISVLIATDIAARGIDIDKLPVVINFDLPRSPADYMHRIGRSGRAGEA-GLAVTLISHEE 361
Query: 580 ARFAG 584
G
Sbjct: 362 YHHFG 366
>TIGR_CMR|SO_3125 [details] [associations]
symbol:SO_3125 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
ProtClustDB:CLSK907013 RefSeq:NP_718686.1 ProteinModelPortal:Q8ECL2
GeneID:1170814 KEGG:son:SO_3125 PATRIC:23525896 OMA:AHLIKQH
Uniprot:Q8ECL2
Length = 427
Score = 644 (231.8 bits), Expect = 4.2e-63, P = 4.2e-63
Identities = 140/365 (38%), Positives = 215/365 (58%)
Query: 224 VKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPM 283
V +F + G L + +++ GY PT +Q +P +LSGRD++ A TGSGKTAAF LP+
Sbjct: 8 VASFAELGIIAPLGNRLTELGYVSPTPVQAATIPAVLSGRDVLAGANTGSGKTAAFALPL 67
Query: 284 IVHIMDQPELQKEEGPIG-VICAPTRELAHQIYLETKKFAKSH--G-IRVSAVYGGMSKL 339
+ + + K G + ++ PTRELA Q+ +A SH G +++ A +GG+S
Sbjct: 68 LQRLSEAKSADKSAGVVRCLVLVPTRELAQQVADSFLSYA-SHFNGQLKIVAAFGGVSVN 126
Query: 340 DQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQ 399
Q + L+AG ++++ATPGRL+D+L AL +++V+ VLDEADRM LGF ++ ++
Sbjct: 127 LQMQSLRAGADVLVATPGRLLDLLASNALKLTQVSAFVLDEADRMLSLGFTEELEQVLAA 186
Query: 400 IRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPW 459
+ +QTLLFSAT P +V L ++L P+ + + ++ T VI + E+
Sbjct: 187 LPRQKQTLLFSATFPEEVRALTTKLLHQPLEYHL----QSEQESTIEQRVITVNREQKTA 242
Query: 460 LLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSG 519
LL L L+F S K T + + +L+++G A HGDK Q +R +L FK+G
Sbjct: 243 LLAHLIKQHQWSQALIFVSAKNTCNHLAQKLSKRGISAEVFHGDKAQGARTRVLDGFKNG 302
Query: 520 VYHVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKE 579
VLIATD+AARG+DI + V+NFD+ R ++HRIGR+GRAG+ G A TL++ +E
Sbjct: 303 EISVLIATDIAARGIDIDKLPVVINFDLPRSPADYMHRIGRSGRAGEA-GLAVTLISHEE 361
Query: 580 ARFAG 584
G
Sbjct: 362 YHHFG 366
>TIGR_CMR|SO_3783 [details] [associations]
symbol:SO_3783 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0006139
"nucleobase-containing compound metabolic process" evidence=ISS]
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:AE014299
GenomeReviews:AE014299_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
HSSP:Q58083 HOGENOM:HOG000268807 KO:K11927 OMA:HLIKQHN
RefSeq:NP_719320.1 ProteinModelPortal:Q8EAV8 GeneID:1171430
KEGG:son:SO_3783 PATRIC:23527244 ProtClustDB:CLSK2393932
Uniprot:Q8EAV8
Length = 535
Score = 642 (231.1 bits), Expect = 6.9e-63, P = 6.9e-63
Identities = 138/361 (38%), Positives = 217/361 (60%)
Query: 226 TFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIV 285
+F G S L A+S+QGY+ P+ IQ QA+P +L+G+D++ A+TG+GKTA F LP++
Sbjct: 2 SFSALGLSAPLQKAVSEQGYDTPSPIQAQAIPAVLTGKDVMAAAQTGTGKTAGFTLPLL- 60
Query: 286 HIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKEL 345
++ + K ++ PTRELA Q+ + + K +R + V+GG+ Q +L
Sbjct: 61 ELLAKGHKAKSGQTRALVLTPTRELAAQVGESVETYGKYLPLRSAVVFGGVPINPQINKL 120
Query: 346 KAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQ 405
+ G ++++ATPGRL+D+++ A+ +++ LVLDEADRM D+GF I+ I+ + RQ
Sbjct: 121 RHGVDVLVATPGRLLDLVQQNAVKFNQLEILVLDEADRMLDMGFIRDIKKILALLPAKRQ 180
Query: 406 TLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEKLP 465
L+FSAT ++ +LA+ +++ PV ++V A + Q + P D + LL +L
Sbjct: 181 NLMFSATFSDEIRELAKGLVNHPVEISVTPRNAAATTVKQ--WICPVDKTQKSALLIQLI 238
Query: 466 GMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLI 525
+ VLVF+ K + + L Q AAA+HG+K Q +R + L FKSG VL+
Sbjct: 239 KQENWQQVLVFSRTKHGANRLAKSLIQAEISAAAIHGNKSQGARTKALADFKSGEVRVLV 298
Query: 526 ATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGE 585
ATD+AARGLDI + VVNFD+ + +VHRIGRTGRAG G A +LV+ +E + +
Sbjct: 299 ATDIAARGLDIDQLPQVVNFDLPNVPEDYVHRIGRTGRAG-ATGQAVSLVSSEEIKLLKD 357
Query: 586 L 586
+
Sbjct: 358 I 358
>UNIPROTKB|Q9KMW4 [details] [associations]
symbol:VC_A0204 "ATP-dependent RNA helicase RhlE"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
[GO:0008152 "metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE003853 GenomeReviews:AE003853_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 KO:K11927 PIR:E82488
RefSeq:NP_232603.1 ProteinModelPortal:Q9KMW4 DNASU:2612352
GeneID:2612352 KEGG:vch:VCA0204 PATRIC:20084977 OMA:AISFCDA
ProtClustDB:CLSK869561 Uniprot:Q9KMW4
Length = 451
Score = 641 (230.7 bits), Expect = 8.8e-63, P = 8.8e-63
Identities = 135/354 (38%), Positives = 215/354 (60%)
Query: 227 FEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVH 286
F G S ++ AI ++GY P+ IQ QA+P +L+G+D++ A+TG+GKTA F LP++
Sbjct: 3 FTSLGLSAPILKAIEEKGYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPILEL 62
Query: 287 IMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELK 346
+ P+++ + +I PTRELA QI + + ++ + V+GG+ Q + +
Sbjct: 63 LAKGPKVRANQVR-ALILTPTRELAAQIQDNVMLYGRHLPLKSAVVFGGVKINPQMQRMC 121
Query: 347 AGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQT 406
G +I++ATPGRL+D+ A+ ++ LVLDEADRM D+GF I I+ + RQ
Sbjct: 122 KGADILVATPGRLMDLYNQNAVKFDQLEILVLDEADRMLDMGFIRDIHKILKLLPEKRQN 181
Query: 407 LLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEKLPG 466
LLFSAT ++ +LA+ ++++PV ++V + Q ++ P+D +K P +L KL
Sbjct: 182 LLFSATFSTEIRELAKGLVNNPVEISVSPANSTARTVEQCIY--PADVKKKPDMLVKLVK 239
Query: 467 MIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIA 526
+ VLVF K + + + L ++G AAA+HG+K Q +R L FK+G +L+A
Sbjct: 240 EGNWQQVLVFMRTKHGANRLATYLNEQGLTAAAIHGNKSQGARTRALADFKAGEVRILVA 299
Query: 527 TDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEA 580
TD+AARG+DI + VVNF++ + + +VHRIGRTGRAG+ G A +LV+ EA
Sbjct: 300 TDIAARGIDIPQLPQVVNFELPKIAEDYVHRIGRTGRAGEV-GKAISLVSAIEA 352
>TIGR_CMR|VC_A0204 [details] [associations]
symbol:VC_A0204 "ATP-dependent RNA helicase RhlE"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008152
"metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE003853 GenomeReviews:AE003853_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 KO:K11927 PIR:E82488
RefSeq:NP_232603.1 ProteinModelPortal:Q9KMW4 DNASU:2612352
GeneID:2612352 KEGG:vch:VCA0204 PATRIC:20084977 OMA:AISFCDA
ProtClustDB:CLSK869561 Uniprot:Q9KMW4
Length = 451
Score = 641 (230.7 bits), Expect = 8.8e-63, P = 8.8e-63
Identities = 135/354 (38%), Positives = 215/354 (60%)
Query: 227 FEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVH 286
F G S ++ AI ++GY P+ IQ QA+P +L+G+D++ A+TG+GKTA F LP++
Sbjct: 3 FTSLGLSAPILKAIEEKGYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPILEL 62
Query: 287 IMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELK 346
+ P+++ + +I PTRELA QI + + ++ + V+GG+ Q + +
Sbjct: 63 LAKGPKVRANQVR-ALILTPTRELAAQIQDNVMLYGRHLPLKSAVVFGGVKINPQMQRMC 121
Query: 347 AGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQT 406
G +I++ATPGRL+D+ A+ ++ LVLDEADRM D+GF I I+ + RQ
Sbjct: 122 KGADILVATPGRLMDLYNQNAVKFDQLEILVLDEADRMLDMGFIRDIHKILKLLPEKRQN 181
Query: 407 LLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEKLPG 466
LLFSAT ++ +LA+ ++++PV ++V + Q ++ P+D +K P +L KL
Sbjct: 182 LLFSATFSTEIRELAKGLVNNPVEISVSPANSTARTVEQCIY--PADVKKKPDMLVKLVK 239
Query: 467 MIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIA 526
+ VLVF K + + + L ++G AAA+HG+K Q +R L FK+G +L+A
Sbjct: 240 EGNWQQVLVFMRTKHGANRLATYLNEQGLTAAAIHGNKSQGARTRALADFKAGEVRILVA 299
Query: 527 TDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEA 580
TD+AARG+DI + VVNF++ + + +VHRIGRTGRAG+ G A +LV+ EA
Sbjct: 300 TDIAARGIDIPQLPQVVNFELPKIAEDYVHRIGRTGRAGEV-GKAISLVSAIEA 352
>UNIPROTKB|Q9KS53 [details] [associations]
symbol:VC1407 "ATP-dependent RNA helicase RhlE"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
[GO:0008152 "metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GenomeReviews:AE003852_GR GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 OMA:FRNLCAI HSSP:P10081 EMBL:AE004219 PIR:D82203
RefSeq:NP_231050.1 ProteinModelPortal:Q9KS53 DNASU:2614039
GeneID:2614039 KEGG:vch:VC1407 PATRIC:20081876
ProtClustDB:CLSK874358 Uniprot:Q9KS53
Length = 397
Score = 640 (230.4 bits), Expect = 1.1e-62, P = 1.1e-62
Identities = 138/352 (39%), Positives = 214/352 (60%)
Query: 226 TFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIV 285
+F G S L+ +++ GY+KPT IQ QA+P+IL GRD+I A+TG+GKTA+FVLP I+
Sbjct: 2 SFSQLGLSDVLVQTVAQLGYQKPTHIQTQAIPVILQGRDLIAAAQTGTGKTASFVLP-IL 60
Query: 286 HIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKEL 345
+ Q + Q+++ +I PTRELA Q+ + +++ K G++ AV+GG+ + Q + L
Sbjct: 61 EKLRQGQTQRKKRVRALILVPTRELAMQVAEKVEQYGKDTGLKSLAVFGGVDEQAQKQRL 120
Query: 346 KAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQ 405
G ++++ATPGRL+D+ +A+ + +VLDEADRM D+GF I I+ + + Q
Sbjct: 121 IDGVDVLVATPGRLMDLYGQRAVYFEEIEMVVLDEADRMLDMGFIESINKIIDCLPSEVQ 180
Query: 406 TLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEKLP 465
LLFSAT+ RKV +LA+ + DP +++ + +I+Q + + D + LL L
Sbjct: 181 FLLFSATLSRKVRELAKTAVRDPHEISIAANQASKSNISQWLITVDKDTKSA--LLSHLI 238
Query: 466 GMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLI 525
L+F K ++ SQL ++G A A H + QA R ++L+ FKSG L+
Sbjct: 239 NEQQWDQALIFIETKHGAAKLVSQLEKRGIHAEAFHSGRSQAIRAQLLEDFKSGKIKYLV 298
Query: 526 ATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQ 577
AT VAARG+DI + VVN+D+ D +VHRIGRTGRA + G A + V++
Sbjct: 299 ATGVAARGIDIDQLSRVVNYDLPFPADEYVHRIGRTGRA-EAVGEAISFVSK 349
>TIGR_CMR|VC_1407 [details] [associations]
symbol:VC_1407 "ATP-dependent RNA helicase RhlE"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008152
"metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GenomeReviews:AE003852_GR GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 OMA:FRNLCAI HSSP:P10081 EMBL:AE004219 PIR:D82203
RefSeq:NP_231050.1 ProteinModelPortal:Q9KS53 DNASU:2614039
GeneID:2614039 KEGG:vch:VC1407 PATRIC:20081876
ProtClustDB:CLSK874358 Uniprot:Q9KS53
Length = 397
Score = 640 (230.4 bits), Expect = 1.1e-62, P = 1.1e-62
Identities = 138/352 (39%), Positives = 214/352 (60%)
Query: 226 TFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIV 285
+F G S L+ +++ GY+KPT IQ QA+P+IL GRD+I A+TG+GKTA+FVLP I+
Sbjct: 2 SFSQLGLSDVLVQTVAQLGYQKPTHIQTQAIPVILQGRDLIAAAQTGTGKTASFVLP-IL 60
Query: 286 HIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKEL 345
+ Q + Q+++ +I PTRELA Q+ + +++ K G++ AV+GG+ + Q + L
Sbjct: 61 EKLRQGQTQRKKRVRALILVPTRELAMQVAEKVEQYGKDTGLKSLAVFGGVDEQAQKQRL 120
Query: 346 KAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQ 405
G ++++ATPGRL+D+ +A+ + +VLDEADRM D+GF I I+ + + Q
Sbjct: 121 IDGVDVLVATPGRLMDLYGQRAVYFEEIEMVVLDEADRMLDMGFIESINKIIDCLPSEVQ 180
Query: 406 TLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEKLP 465
LLFSAT+ RKV +LA+ + DP +++ + +I+Q + + D + LL L
Sbjct: 181 FLLFSATLSRKVRELAKTAVRDPHEISIAANQASKSNISQWLITVDKDTKSA--LLSHLI 238
Query: 466 GMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLI 525
L+F K ++ SQL ++G A A H + QA R ++L+ FKSG L+
Sbjct: 239 NEQQWDQALIFIETKHGAAKLVSQLEKRGIHAEAFHSGRSQAIRAQLLEDFKSGKIKYLV 298
Query: 526 ATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQ 577
AT VAARG+DI + VVN+D+ D +VHRIGRTGRA + G A + V++
Sbjct: 299 ATGVAARGIDIDQLSRVVNYDLPFPADEYVHRIGRTGRA-EAVGEAISFVSK 349
>UNIPROTKB|Q8EE19 [details] [associations]
symbol:SO_2571 "ATP-dependent RNA helicase DEAD box family"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 OMA:FRNLCAI
HOGENOM:HOG000268807 RefSeq:NP_718157.1 ProteinModelPortal:Q8EE19
GeneID:1170275 KEGG:son:SO_2571 PATRIC:23524769
ProtClustDB:CLSK906777 Uniprot:Q8EE19
Length = 475
Score = 639 (230.0 bits), Expect = 1.4e-62, P = 1.4e-62
Identities = 133/355 (37%), Positives = 215/355 (60%)
Query: 227 FEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVH 286
F G + L+ A+++ GY+ PT IQ QA+P IL+G++++ A+TG+GKTA+FVLP++
Sbjct: 3 FSQLGLHSALVKAVTELGYQSPTPIQTQAIPSILAGKNVLAAAQTGTGKTASFVLPLLHR 62
Query: 287 IMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELK 346
D P+++ + +I PTRELA Q+ ++AK + A+YGG+ Q K L
Sbjct: 63 FADAPKIRPKRVR-SIILTPTRELALQVEQNINQYAKYLPLTAMAMYGGVDAAPQKKRLI 121
Query: 347 AGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQT 406
G ++++ATPGRL+DM +A+ V+ LVLDEADRM D+GF I +I+ ++ RQ
Sbjct: 122 EGVDLLVATPGRLLDMYTQRAIRFDEVSVLVLDEADRMLDMGFIEDINNIIEKLPEQRQN 181
Query: 407 LLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEKLPG 466
LLFSAT+ ++V+ LA+ + D + + + A+ I Q + + D + LL L
Sbjct: 182 LLFSATLSKQVKALAKTAIPDAIEIEISRKNAASTQIDQWLTTVDKDRKSA--LLSHLIK 239
Query: 467 MIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIA 526
+ L+F K ++ SQL ++G A A H + QA R ++L FK+G L+A
Sbjct: 240 ENNWAQALIFIQTKHGAAKLVSQLEKRGIVAEAFHSGRSQAIREQLLIDFKAGKVPFLVA 299
Query: 527 TDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEAR 581
T V +RG+DI +++ V+N+D+ + D ++HRIGRTGRAG++ G A + V++ + R
Sbjct: 300 TGVVSRGIDIDALERVINYDLPDEADDYIHRIGRTGRAGNQ-GEAISFVSKDDFR 353
>TIGR_CMR|SO_2571 [details] [associations]
symbol:SO_2571 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 OMA:FRNLCAI
HOGENOM:HOG000268807 RefSeq:NP_718157.1 ProteinModelPortal:Q8EE19
GeneID:1170275 KEGG:son:SO_2571 PATRIC:23524769
ProtClustDB:CLSK906777 Uniprot:Q8EE19
Length = 475
Score = 639 (230.0 bits), Expect = 1.4e-62, P = 1.4e-62
Identities = 133/355 (37%), Positives = 215/355 (60%)
Query: 227 FEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVH 286
F G + L+ A+++ GY+ PT IQ QA+P IL+G++++ A+TG+GKTA+FVLP++
Sbjct: 3 FSQLGLHSALVKAVTELGYQSPTPIQTQAIPSILAGKNVLAAAQTGTGKTASFVLPLLHR 62
Query: 287 IMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELK 346
D P+++ + +I PTRELA Q+ ++AK + A+YGG+ Q K L
Sbjct: 63 FADAPKIRPKRVR-SIILTPTRELALQVEQNINQYAKYLPLTAMAMYGGVDAAPQKKRLI 121
Query: 347 AGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQT 406
G ++++ATPGRL+DM +A+ V+ LVLDEADRM D+GF I +I+ ++ RQ
Sbjct: 122 EGVDLLVATPGRLLDMYTQRAIRFDEVSVLVLDEADRMLDMGFIEDINNIIEKLPEQRQN 181
Query: 407 LLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEKLPG 466
LLFSAT+ ++V+ LA+ + D + + + A+ I Q + + D + LL L
Sbjct: 182 LLFSATLSKQVKALAKTAIPDAIEIEISRKNAASTQIDQWLTTVDKDRKSA--LLSHLIK 239
Query: 467 MIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIA 526
+ L+F K ++ SQL ++G A A H + QA R ++L FK+G L+A
Sbjct: 240 ENNWAQALIFIQTKHGAAKLVSQLEKRGIVAEAFHSGRSQAIREQLLIDFKAGKVPFLVA 299
Query: 527 TDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEAR 581
T V +RG+DI +++ V+N+D+ + D ++HRIGRTGRAG++ G A + V++ + R
Sbjct: 300 TGVVSRGIDIDALERVINYDLPDEADDYIHRIGRTGRAGNQ-GEAISFVSKDDFR 353
>POMBASE|SPAC823.08c [details] [associations]
symbol:SPAC823.08c "ATP-dependent RNA helicase Rrp3
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISS] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=ISS] [GO:0005829 "cytosol" evidence=IDA] [GO:0006364 "rRNA
processing" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 PomBase:SPAC823.08c GO:GO:0005829
GO:GO:0005524 EMBL:CU329670 GO:GO:0005730 GenomeReviews:CU329670_GR
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268802 KO:K14777 OMA:IFIPSKF
OrthoDB:EOG4ZPJ3P RefSeq:NP_593835.1 ProteinModelPortal:Q9P6N8
SMR:Q9P6N8 STRING:Q9P6N8 EnsemblFungi:SPAC823.08c.1 GeneID:2543571
KEGG:spo:SPAC823.08c NextBio:20804578 Uniprot:Q9P6N8
Length = 465
Score = 639 (230.0 bits), Expect = 1.4e-62, P = 1.4e-62
Identities = 147/357 (41%), Positives = 207/357 (57%)
Query: 225 KTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMI 284
KTF++ G +L A K G++ PT IQ +A+P++L+ RD+IG+A+TGSGKTAAF LP+I
Sbjct: 46 KTFKELGVIDELCEACEKLGFKTPTPIQQEAIPVVLNKRDVIGLAQTGSGKTAAFALPVI 105
Query: 285 VHIMDQPELQKEEGPI-GVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFK 343
+ + P P V+ APTRELA+QI + + S G+R + GGM + Q
Sbjct: 106 QELWNNPS------PFFAVVLAPTRELAYQISEQFEAIGGSIGVRSVVIVGGMDMVTQAV 159
Query: 344 ELKAGCEIVIATPGRLIDMLK-MKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRP 402
L +++ TPGRL+D L+ K ++ + YL++DEADR+ D+ F P I I+ I
Sbjct: 160 ALSKKPHVLVCTPGRLMDHLENTKGFSLKNLKYLIMDEADRLLDMDFGPIIDKILKIIPH 219
Query: 403 DRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEK--LPWL 460
+R+TLLFSATM KVEKL R L PVRV V + + Q P + L +L
Sbjct: 220 ERRTLLFSATMTSKVEKLQRASLHQPVRVAVSSKFSTVDTLIQRYLFFPFKHKDTYLVYL 279
Query: 461 LEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGV 520
+ +L G +++FA + L GF A LHG Q++R+ L KFKSG
Sbjct: 280 VNELAG----NSIIIFARTVNDTQRLAILLRTLGFSAIPLHGQLSQSNRLGALNKFKSGA 335
Query: 521 YHVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQ 577
L+ATDVAARGLDI + V+N+DI D ++HR+GRT RAG + G + LVTQ
Sbjct: 336 RSTLVATDVAARGLDIPLVDVVINYDIPTDSKAYIHRVGRTARAG-RAGKSIALVTQ 391
>UNIPROTKB|Q3AFI3 [details] [associations]
symbol:CHY_0229 "ATP-dependent RNA helicase, DEAD box
family" species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268810 KO:K05592 RefSeq:YP_359101.1
ProteinModelPortal:Q3AFI3 STRING:Q3AFI3 GeneID:3727044
KEGG:chy:CHY_0229 PATRIC:21273641 OMA:YAAKGLH
BioCyc:CHYD246194:GJCN-230-MONOMER Uniprot:Q3AFI3
Length = 430
Score = 638 (229.6 bits), Expect = 1.8e-62, P = 1.8e-62
Identities = 147/394 (37%), Positives = 229/394 (58%)
Query: 224 VKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPM 283
++ F+ G T L+ A++ G+E PT IQ +A+P+IL G +++G A TG+GKTAA++LP+
Sbjct: 1 MEEFKKLGLITPLLKAVNDLGFEMPTPIQKEAIPLILEGHNLVGQAPTGTGKTAAYLLPV 60
Query: 284 IVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFK 343
+ I + Q +I PTRELA Q+ E K K +R AVYGG + Q +
Sbjct: 61 LQRIQRGKKAQV------LIVTPTRELALQVADEVAKLGKYLKVRALAVYGGQAIERQIR 114
Query: 344 ELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPD 403
L+ G E+++ TPGR++D + K + + ++LDEAD M D+GF I +I+ +
Sbjct: 115 GLRQGVEVIVGTPGRILDHIGRKTFPAAEIKIVILDEADEMLDMGFIDDIEAILNTLTNR 174
Query: 404 RQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANE--DITQVVHVIPSDAEKLPWLL 461
+QTLLFSAT+P ++ + ++ L TV VG I QV + +P + EK+ L+
Sbjct: 175 QQTLLFSATLPAPIKTIIKKFLGG--YKTVKLVGREKTVPAIRQVYYELP-ETEKIEGLV 231
Query: 462 EKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVY 521
L + +VF K VDE+ QL +G+ A LHGD Q R + ++ FK+G
Sbjct: 232 SILNSELPI-QAIVFCRTKKRVDEVVEQLNFRGYAAKGLHGDMSQRERTQTIKSFKAGKT 290
Query: 522 HVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEAR 581
+L+ATDVAARGLDI + V+NFDI ++ + ++HRIGRTGRAG ++G A TL+ +E +
Sbjct: 291 ELLVATDVAARGLDIPDVSHVINFDIPQNPESYIHRIGRTGRAG-REGKAITLINYRERK 349
Query: 582 FAG---ELVNSLIAAGQNVSMELMDLAMKDGRFR 612
E +N + + + E +DL ++ RF+
Sbjct: 350 LLKAIEEAINKRLK--REILPEPVDL--EEARFK 379
>TIGR_CMR|CHY_0229 [details] [associations]
symbol:CHY_0229 "ATP-dependent RNA helicase, DEAD box
family" species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268810 KO:K05592 RefSeq:YP_359101.1
ProteinModelPortal:Q3AFI3 STRING:Q3AFI3 GeneID:3727044
KEGG:chy:CHY_0229 PATRIC:21273641 OMA:YAAKGLH
BioCyc:CHYD246194:GJCN-230-MONOMER Uniprot:Q3AFI3
Length = 430
Score = 638 (229.6 bits), Expect = 1.8e-62, P = 1.8e-62
Identities = 147/394 (37%), Positives = 229/394 (58%)
Query: 224 VKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPM 283
++ F+ G T L+ A++ G+E PT IQ +A+P+IL G +++G A TG+GKTAA++LP+
Sbjct: 1 MEEFKKLGLITPLLKAVNDLGFEMPTPIQKEAIPLILEGHNLVGQAPTGTGKTAAYLLPV 60
Query: 284 IVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFK 343
+ I + Q +I PTRELA Q+ E K K +R AVYGG + Q +
Sbjct: 61 LQRIQRGKKAQV------LIVTPTRELALQVADEVAKLGKYLKVRALAVYGGQAIERQIR 114
Query: 344 ELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPD 403
L+ G E+++ TPGR++D + K + + ++LDEAD M D+GF I +I+ +
Sbjct: 115 GLRQGVEVIVGTPGRILDHIGRKTFPAAEIKIVILDEADEMLDMGFIDDIEAILNTLTNR 174
Query: 404 RQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANE--DITQVVHVIPSDAEKLPWLL 461
+QTLLFSAT+P ++ + ++ L TV VG I QV + +P + EK+ L+
Sbjct: 175 QQTLLFSATLPAPIKTIIKKFLGG--YKTVKLVGREKTVPAIRQVYYELP-ETEKIEGLV 231
Query: 462 EKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVY 521
L + +VF K VDE+ QL +G+ A LHGD Q R + ++ FK+G
Sbjct: 232 SILNSELPI-QAIVFCRTKKRVDEVVEQLNFRGYAAKGLHGDMSQRERTQTIKSFKAGKT 290
Query: 522 HVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEAR 581
+L+ATDVAARGLDI + V+NFDI ++ + ++HRIGRTGRAG ++G A TL+ +E +
Sbjct: 291 ELLVATDVAARGLDIPDVSHVINFDIPQNPESYIHRIGRTGRAG-REGKAITLINYRERK 349
Query: 582 FAG---ELVNSLIAAGQNVSMELMDLAMKDGRFR 612
E +N + + + E +DL ++ RF+
Sbjct: 350 LLKAIEEAINKRLK--REILPEPVDL--EEARFK 379
>UNIPROTKB|Q29S22 [details] [associations]
symbol:DDX47 "Probable ATP-dependent RNA helicase DDX47"
species:9913 "Bos taurus" [GO:0005730 "nucleolus" evidence=ISS]
[GO:0008380 "RNA splicing" evidence=ISS] [GO:0006915 "apoptotic
process" evidence=ISS] [GO:0006364 "rRNA processing" evidence=ISS]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0006915 GO:GO:0005730
GO:GO:0008380 GO:GO:0006397 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268802 GeneTree:ENSGT00670000098028 EMBL:BC113207
IPI:IPI00688068 RefSeq:NP_001039850.1 UniGene:Bt.23258
ProteinModelPortal:Q29S22 SMR:Q29S22 PRIDE:Q29S22
Ensembl:ENSBTAT00000003058 GeneID:534721 KEGG:bta:534721 CTD:51202
HOVERGEN:HBG100512 InParanoid:Q29S22 KO:K14777 OMA:IFIPSKF
OrthoDB:EOG4TXBRS NextBio:20876515 Uniprot:Q29S22
Length = 457
Score = 636 (228.9 bits), Expect = 3.0e-62, P = 3.0e-62
Identities = 146/356 (41%), Positives = 204/356 (57%)
Query: 225 KTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMI 284
KTF+D G + L A + G+ KPT IQ +A+P+ L GRDIIG+A+TGSGKT AF LP++
Sbjct: 26 KTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPIL 85
Query: 285 VHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKE 344
+++ P+ ++ PTRELA QI + + S G++ + + GG+ + Q
Sbjct: 86 NALLETPQRL-----FALVLTPTRELAFQISEQFEALGSSIGVQCAVIVGGIDSMSQSLA 140
Query: 345 LKAGCEIVIATPGRLIDMLK-MKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPD 403
L IVIATPGRLID L+ K + + YLV+DEADR+ ++ FE ++ I+ I D
Sbjct: 141 LAKKPHIVIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRD 200
Query: 404 RQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEK--LPWLL 461
R+T LFSATM +KV+KL R L +PV+ V E + Q IPS + L ++L
Sbjct: 201 RKTFLFSATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYLFIPSKFKDTYLVYIL 260
Query: 462 EKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVY 521
+L G ++F S L GF A LHG Q+ R+ L KFK+
Sbjct: 261 NELAG----NSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKAR 316
Query: 522 HVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQ 577
+L+ATDVA+RGLDI + VVNFDI ++HR+GRT RAG + G A T VTQ
Sbjct: 317 SILLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAG-RSGKAITFVTQ 371
>MGI|MGI:1915005 [details] [associations]
symbol:Ddx47 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 47"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005730 "nucleolus"
evidence=ISO] [GO:0006364 "rRNA processing" evidence=ISO]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0006915 "apoptotic
process" evidence=ISO] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0008380 "RNA splicing" evidence=ISO]
[GO:0016787 "hydrolase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 MGI:MGI:1915005
GO:GO:0005524 GO:GO:0006915 GO:GO:0005730 GO:GO:0008380
GO:GO:0006397 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268802
GeneTree:ENSGT00670000098028 CTD:51202 HOVERGEN:HBG100512 KO:K14777
OMA:IFIPSKF OrthoDB:EOG4TXBRS ChiTaRS:DDX47 EMBL:AK010310
EMBL:AK076982 IPI:IPI00187240 RefSeq:NP_080636.2 UniGene:Mm.166524
ProteinModelPortal:Q9CWX9 SMR:Q9CWX9 IntAct:Q9CWX9
PhosphoSite:Q9CWX9 PaxDb:Q9CWX9 PRIDE:Q9CWX9
Ensembl:ENSMUST00000032326 GeneID:67755 KEGG:mmu:67755
InParanoid:Q9CWX9 NextBio:325481 Bgee:Q9CWX9 CleanEx:MM_DDX47
Genevestigator:Q9CWX9 GermOnline:ENSMUSG00000030204 Uniprot:Q9CWX9
Length = 455
Score = 636 (228.9 bits), Expect = 3.0e-62, P = 3.0e-62
Identities = 146/356 (41%), Positives = 204/356 (57%)
Query: 225 KTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMI 284
KTF+D G + L A + G+ KPT IQ +A+P+ L GRDIIG+A+TGSGKT AF LP++
Sbjct: 24 KTFKDLGVTDVLCEACDQLGWAKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPIL 83
Query: 285 VHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKE 344
+++ P+ ++ PTRELA QI + + S G++ + + GG+ + Q
Sbjct: 84 NALLETPQRL-----FALVLTPTRELAFQISEQFEALGSSIGVQCAVIVGGIDSMSQSLA 138
Query: 345 LKAGCEIVIATPGRLIDMLK-MKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPD 403
L IVIATPGRLID L+ K + + YLV+DEADR+ ++ FE ++ I+ I D
Sbjct: 139 LAKKPHIVIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRD 198
Query: 404 RQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEK--LPWLL 461
R+T LFSATM +KV+KL R L +PV+ V E + Q IPS + L ++L
Sbjct: 199 RKTFLFSATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYLFIPSKFKDTYLVYIL 258
Query: 462 EKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVY 521
+L G ++F S L GF A LHG Q+ R+ L KFK+
Sbjct: 259 NELAG----NSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKAR 314
Query: 522 HVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQ 577
+L+ATDVA+RGLDI + VVNFDI ++HR+GRT RAG + G A T VTQ
Sbjct: 315 SILLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAG-RSGKAITFVTQ 369
>UNIPROTKB|G3V727 [details] [associations]
symbol:Ddx47 "Protein Ddx47" species:10116 "Rattus
norvegicus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0006364 "rRNA processing" evidence=IEA]
[GO:0006915 "apoptotic process" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 EMBL:CH473964
GeneTree:ENSGT00670000098028 CTD:51202 KO:K14777 OMA:IFIPSKF
RefSeq:NP_001015005.2 UniGene:Rn.73790 Ensembl:ENSRNOT00000011096
GeneID:297685 KEGG:rno:297685 RGD:1310437 NextBio:642541
Uniprot:G3V727
Length = 455
Score = 636 (228.9 bits), Expect = 3.0e-62, P = 3.0e-62
Identities = 146/356 (41%), Positives = 204/356 (57%)
Query: 225 KTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMI 284
KTF+D G + L A + G+ KPT IQ +A+P+ L GRDIIG+A+TGSGKT AF LP++
Sbjct: 24 KTFKDLGVTDVLCEACDQLGWAKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPIL 83
Query: 285 VHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKE 344
+++ P+ ++ PTRELA QI + + S G++ + + GG+ + Q
Sbjct: 84 NALLETPQRL-----FALVLTPTRELAFQISEQFEALGSSIGVQCAVIVGGIDSMSQSLA 138
Query: 345 LKAGCEIVIATPGRLIDMLK-MKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPD 403
L IVIATPGRLID L+ K + + YLV+DEADR+ ++ FE ++ I+ I D
Sbjct: 139 LAKKPHIVIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRD 198
Query: 404 RQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEK--LPWLL 461
R+T LFSATM +KV+KL R L +PV+ V E + Q IPS + L ++L
Sbjct: 199 RKTFLFSATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYLFIPSKFKDTYLVYIL 258
Query: 462 EKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVY 521
+L G ++F S L GF A LHG Q+ R+ L KFK+
Sbjct: 259 NELAG----NSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKAR 314
Query: 522 HVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQ 577
+L+ATDVA+RGLDI + VVNFDI ++HR+GRT RAG + G A T VTQ
Sbjct: 315 SILLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAG-RSGKAITFVTQ 369
>UNIPROTKB|E2RN03 [details] [associations]
symbol:DDX47 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0006915 "apoptotic process" evidence=IEA] [GO:0006364 "rRNA
processing" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0006915
GO:GO:0005730 GO:GO:0008380 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00670000098028
OMA:IFIPSKF EMBL:AAEX03015248 Ensembl:ENSCAFT00000020996
NextBio:20853120 Uniprot:E2RN03
Length = 482
Score = 635 (228.6 bits), Expect = 3.8e-62, P = 3.8e-62
Identities = 146/356 (41%), Positives = 204/356 (57%)
Query: 225 KTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMI 284
KTF+D G + L A + G+ KPT IQ +A+P+ L GRDIIG+A+TGSGKT AF LP++
Sbjct: 50 KTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPIL 109
Query: 285 VHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKE 344
+++ P+ ++ PTRELA QI + + S G++ + + GG+ + Q
Sbjct: 110 NALLETPQRL-----FALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLA 164
Query: 345 LKAGCEIVIATPGRLIDMLK-MKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPD 403
L IVIATPGRLID L+ K + + YLV+DEADR+ ++ FE ++ I+ I D
Sbjct: 165 LAKKPHIVIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRD 224
Query: 404 RQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEK--LPWLL 461
R+T LFSATM +KV+KL R L +PV+ V E + Q IPS + L ++L
Sbjct: 225 RKTFLFSATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYLFIPSKFKDTYLVYIL 284
Query: 462 EKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVY 521
+L G ++F S L GF A LHG Q+ R+ L KFK+
Sbjct: 285 NELAG----NSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKAR 340
Query: 522 HVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQ 577
+L+ATDVA+RGLDI + VVNFDI ++HR+GRT RAG + G A T VTQ
Sbjct: 341 SILLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAG-RSGKAITFVTQ 395
>POMBASE|SPAC30D11.03 [details] [associations]
symbol:ddx27 "ATP-dependent RNA helicase Ddx27/Drs1
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISO] [GO:0005524 "ATP binding" evidence=ISM]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=ISO;IDA] [GO:0006364 "rRNA processing" evidence=ISO]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 PomBase:SPAC30D11.03 GO:GO:0005524 EMBL:CU329670
GO:GO:0005730 GenomeReviews:CU329670_GR GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000265456 KO:K13181 OrthoDB:EOG4B01XM PIR:S62561
RefSeq:NP_593214.1 ProteinModelPortal:Q09903 STRING:Q09903
EnsemblFungi:SPAC30D11.03.1 GeneID:2543155 KEGG:spo:SPAC30D11.03
NextBio:20804181 Uniprot:Q09903
Length = 754
Score = 595 (214.5 bits), Expect = 4.8e-62, Sum P(2) = 4.8e-62
Identities = 166/477 (34%), Positives = 247/477 (51%)
Query: 136 DSDEEVYAAAKAVDAGML----DYDSDDNPVVVEKKKI-EPIPALDHSLIDYEPFNKDFY 190
DSD+E A AG + D S D E+ I EP+P+ + I + FN D
Sbjct: 168 DSDDEDLAI-DGFGAGAIAENEDESSQDESESEEEDDITEPVPSFAN--ISTQDFNSD-- 222
Query: 191 QDSASISGMSEQDVMEYKKSLAIRVSGFDVPRPVKT-----FEDCGFSTQLMHAISKQGY 245
SA+ S SE+D E K A G D + + T F+ S ++ +S G+
Sbjct: 223 --SAAGSSDSEEDEEEIAKKNAFFAEG-DKEKSMMTTTHSSFQSMNLSRPILKGLSNLGF 279
Query: 246 EKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICA 305
E PT IQ + +P+ L G+DI+G A TGSGKTAAF++P++ ++ +P+ + + ++C
Sbjct: 280 EVPTQIQDKTIPLALLGKDIVGAAVTGSGKTAAFIVPILERLLYRPK-KVPTTRVLILC- 337
Query: 306 PTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLID-MLK 364
PTRELA Q + K A I V GG+S Q +EL+ +IVIATPGR ID M
Sbjct: 338 PTRELAMQCHSVATKIASFTDIMVCLCIGGLSLKLQEQELRKRPDIVIATPGRFIDHMRN 397
Query: 365 MKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLAREI 424
+ T+ + +V+DEADRM + GF ++ I+ RQT+LFSATM KV+ L R
Sbjct: 398 SQGFTVENIEIMVMDEADRMLEDGFADELNEIIQACPKSRQTMLFSATMTDKVDDLIRLS 457
Query: 425 LSDPVRVTVGEVGMANEDITQ-VVHVIPSDAEKLPWLLEKLPGMIDDGDVLVFASKKTTV 483
L+ PVRV V + +TQ V V P P +L L + ++F K
Sbjct: 458 LNRPVRVFVDNKKTTAKLLTQEFVRVRPQRELLRPAMLIYLCKELFHRRTIIFFRSKAFA 517
Query: 484 DEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVV 543
++ A +HG Q R+ L+ F+ G + L+ATDVA+RG+DIK I+ V+
Sbjct: 518 HKMRVIFGLLSLNATEIHGSLSQEQRVRALEDFRDGKCNYLLATDVASRGIDIKGIEVVI 577
Query: 544 NFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEAR-FAGELVNSLIAAGQNVSM 599
N++ ++++HR+GRT RAG + G A TL + + + G NS + QN +
Sbjct: 578 NYEAPATHEVYLHRVGRTARAG-RSGRAITLAGEGDRKVLKGVFKNS---SAQNTKL 630
Score = 57 (25.1 bits), Expect = 4.8e-62, Sum P(2) = 4.8e-62
Identities = 14/40 (35%), Positives = 21/40 (52%)
Query: 34 PSSRYSHDNYEDTDLDNIDYEDNDAAKAANDTGNGAEKEE 73
PSS S + ++ + +NID +D D A G AE E+
Sbjct: 150 PSSFPSEEELQEPEQENIDSDDEDLAIDGFGAGAIAENED 189
>UNIPROTKB|Q9H0S4 [details] [associations]
symbol:DDX47 "Probable ATP-dependent RNA helicase DDX47"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0006915 "apoptotic process" evidence=IDA]
[GO:0008380 "RNA splicing" evidence=IMP] [GO:0006364 "rRNA
processing" evidence=IMP] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0006915 GO:GO:0005730
GO:GO:0008380 GO:GO:0006397 GO:GO:0003676 GO:GO:0003723
EMBL:CH471094 UniGene:Hs.719938 GermOnline:ENSG00000178878
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268802 CTD:51202 HOVERGEN:HBG100512 KO:K14777
OMA:IFIPSKF EMBL:AF078843 EMBL:AL136666 EMBL:AK054574 EMBL:AK127712
EMBL:AC007215 EMBL:BC009379 EMBL:BC068009 IPI:IPI00023972
IPI:IPI00397372 RefSeq:NP_057439.2 RefSeq:NP_957518.1 PDB:3BER
PDBsum:3BER ProteinModelPortal:Q9H0S4 SMR:Q9H0S4 IntAct:Q9H0S4
MINT:MINT-3056694 STRING:Q9H0S4 PhosphoSite:Q9H0S4 DMDM:52782792
SWISS-2DPAGE:Q9H0S4 PaxDb:Q9H0S4 PRIDE:Q9H0S4 DNASU:51202
Ensembl:ENST00000352940 Ensembl:ENST00000358007 GeneID:51202
KEGG:hsa:51202 UCSC:uc001rav.3 GeneCards:GC12P012966
HGNC:HGNC:18682 HPA:HPA014855 neXtProt:NX_Q9H0S4
PharmGKB:PA134918403 InParanoid:Q9H0S4 PhylomeDB:Q9H0S4
ChiTaRS:DDX47 EvolutionaryTrace:Q9H0S4 GenomeRNAi:51202
NextBio:54238 ArrayExpress:Q9H0S4 Bgee:Q9H0S4 CleanEx:HS_DDX47
Genevestigator:Q9H0S4 Uniprot:Q9H0S4
Length = 455
Score = 634 (228.2 bits), Expect = 4.8e-62, P = 4.8e-62
Identities = 145/356 (40%), Positives = 204/356 (57%)
Query: 225 KTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMI 284
KTF+D G + L A + G+ KPT IQ +A+P+ L GRDIIG+A+TGSGKT AF LP++
Sbjct: 24 KTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPIL 83
Query: 285 VHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKE 344
+++ P+ ++ PTRELA QI + + S G++ + + GG+ + Q
Sbjct: 84 NALLETPQRL-----FALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLA 138
Query: 345 LKAGCEIVIATPGRLIDMLK-MKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPD 403
L I+IATPGRLID L+ K + + YLV+DEADR+ ++ FE ++ I+ I D
Sbjct: 139 LAKKPHIIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRD 198
Query: 404 RQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEK--LPWLL 461
R+T LFSATM +KV+KL R L +PV+ V E + Q IPS + L ++L
Sbjct: 199 RKTFLFSATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYIFIPSKFKDTYLVYIL 258
Query: 462 EKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVY 521
+L G ++F S L GF A LHG Q+ R+ L KFK+
Sbjct: 259 NELAG----NSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKAR 314
Query: 522 HVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQ 577
+L+ATDVA+RGLDI + VVNFDI ++HR+GRT RAG + G A T VTQ
Sbjct: 315 SILLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAG-RSGKAITFVTQ 369
>UNIPROTKB|Q8EGU0 [details] [associations]
symbol:SO_1501 "ATP-dependent RNA helicase DEAD box family"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 HOGENOM:HOG000268807
OMA:GGANMNP RefSeq:NP_717118.1 ProteinModelPortal:Q8EGU0
GeneID:1169311 KEGG:son:SO_1501 PATRIC:23522644
ProtClustDB:CLSK906294 Uniprot:Q8EGU0
Length = 456
Score = 634 (228.2 bits), Expect = 4.8e-62, P = 4.8e-62
Identities = 147/376 (39%), Positives = 226/376 (60%)
Query: 227 FEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVH 286
F+ G S+ L++AI++ GY++ T +Q Q +P+ L G+DI+ A+TG+GKTAAF LP++
Sbjct: 3 FDTLGLSSPLLNAITECGYQQLTQVQQQVIPLALVGKDIMACAQTGTGKTAAFALPVLEQ 62
Query: 287 IMDQPELQKEEGPI--GVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKE 344
+ +P + P+ ++ PTRELA Q+ +K+++ ++ AVYGG + Q K
Sbjct: 63 LAAKPA----DKPLLRALVMTPTRELAIQVCANIQKYSQFLPLKTLAVYGGANMNPQRKG 118
Query: 345 LKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDR 404
++ G +I++ATPGRL D++ L +S VT LV+DEADRM DLGF I + I P
Sbjct: 119 VEQGVDILVATPGRLFDIIGQFNLDLSSVTTLVIDEADRMLDLGFVRDIEKVKRLIAPVH 178
Query: 405 QTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEKL 464
QT+LFSAT V++L+ ++L+ P V V E A+ + Q+V+ + D + LL +L
Sbjct: 179 QTMLFSATYSDAVKQLSHKMLNQPQWVNVAENTTAST-VEQLVYRV--DKRRKAELLSEL 235
Query: 465 PGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVL 524
G + VLVFAS K + + +L G A HGDK Q +R +L FK+G VL
Sbjct: 236 VGRNNWRQVLVFASTKECAEHLLQELTLDGISAGVFHGDKTQGARNRVLDDFKAGKLRVL 295
Query: 525 IATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAG 584
+ATDVAARGLDI+++ V+N ++ + +VHRIGRTGRAG G A + V+ +
Sbjct: 296 VATDVAARGLDIQALPLVINLELPFLAEDYVHRIGRTGRAG-LSGRAISFVSPADDEMLA 354
Query: 585 ELVNSLIAAGQNVSME 600
E + +LI V+++
Sbjct: 355 E-IEALIGEKLPVTVQ 369
>UNIPROTKB|Q8EIE5 [details] [associations]
symbol:dbpA "ATP-dependent RNA helicase DbpA"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268809 KO:K05591
OMA:HIDPARF ProtClustDB:PRK11776 InterPro:IPR005580 Pfam:PF03880
HSSP:P10081 RefSeq:NP_716527.1 ProteinModelPortal:Q8EIE5
GeneID:1168744 KEGG:son:SO_0897 PATRIC:23521451 Uniprot:Q8EIE5
Length = 458
Score = 634 (228.2 bits), Expect = 4.8e-62, P = 4.8e-62
Identities = 141/354 (39%), Positives = 210/354 (59%)
Query: 227 FEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVH 286
F T+L+ +S GY + T IQ Q+LP IL+G D+IG KTGSGKTAAF L ++
Sbjct: 3 FSTLKLKTELLENLSSMGYNEMTPIQAQSLPAILAGEDVIGQGKTGSGKTAAFGLGLL-- 60
Query: 287 IMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKS-HGIRVSAVYGGMSKLDQFKEL 345
++ ++++ V+C PTRELA Q+ E + A+ H ++V + GG+ Q L
Sbjct: 61 --NKLDVKRFRIQTLVLC-PTRELADQVAQEIRTLARGIHNVKVLTLCGGVPMGPQIGSL 117
Query: 346 KAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQ 405
+ G I++ TPGR++D L L +S + LVLDEADRM ++GF+PQ+ +I+ Q +RQ
Sbjct: 118 EHGAHIIVGTPGRIVDHLDRNRLDLSNLNMLVLDEADRMLEMGFQPQLDAIIEQSPRERQ 177
Query: 406 TLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEKLP 465
TLLFSAT P +++ +A++I+ +PV V N I Q + + D ++ L+ L
Sbjct: 178 TLLFSATFPEQIQSIAKQIMYNPVMVKAAVTHEKNT-IEQHFYQLDDDKSRMQ-ALQLLL 235
Query: 466 GMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLI 525
+VF + K ++ +L GF ALHGD +Q R E L +F + VL+
Sbjct: 236 LEHKPESAVVFCNTKRETQKVADELEGLGFSVLALHGDLEQRDRDETLLQFANKSACVLV 295
Query: 526 ATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKE 579
ATDVAARGLDI ++ +V N+ +A D ++H+HRIGRTGRAG K G AYT ++
Sbjct: 296 ATDVAARGLDIDALDAVFNYHVAYDTEVHIHRIGRTGRAGSK-GAAYTFYNDQD 348
>TIGR_CMR|CPS_2658 [details] [associations]
symbol:CPS_2658 "ATP-dependent RNA helicase, DEAD box
family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:CP000083
GenomeReviews:CP000083_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268807 RefSeq:YP_269372.1
ProteinModelPortal:Q480Z7 GeneID:3520428 KEGG:cps:CPS_2658
PATRIC:21468367 OMA:ERNFDSS BioCyc:CPSY167879:GI48-2720-MONOMER
Uniprot:Q480Z7
Length = 399
Score = 634 (228.2 bits), Expect = 4.8e-62, P = 4.8e-62
Identities = 135/356 (37%), Positives = 212/356 (59%)
Query: 236 LMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQ- 294
++ ++ +GY++PT IQ + +P +++G D++GIA+TG+GKTAAF LP I++ + ++
Sbjct: 13 IIDRVNLKGYKQPTPIQKECIPALINGNDLLGIAQTGTGKTAAFSLP-IINKFGRNKIDI 71
Query: 295 KEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIA 354
K + +I PTRELA QI ++ G++ VYGG+ + Q ++ G +I++A
Sbjct: 72 KAKSTRSLILTPTRELASQIMQNIDDYSDGLGLKTKVVYGGVGRQAQVDSIELGLDILVA 131
Query: 355 TPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMP 414
TPGRL+D+++ + + VLDEAD M D+GF ++SI+ ++ RQTLLFSATMP
Sbjct: 132 TPGRLLDLIETGDINFKALEVFVLDEADTMLDMGFFKDVQSIISKLPKSRQTLLFSATMP 191
Query: 415 RKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEKLPGMIDDGDVL 474
++E LA IL+DP ++ + + + + Q V+ + + K+P L L D VL
Sbjct: 192 AEIEILAEAILTDPTKIQITAETVTIDLVNQSVYHLDK-SNKVPLLFNILT-KADYEKVL 249
Query: 475 VFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGL 534
+F K D I L + AA+LH K QA R E LQ FK VL+ATDVAARG+
Sbjct: 250 IFCKTKYGADIIVKALEKASITAASLHSGKTQAVREEALQNFKDSTLRVLVATDVAARGI 309
Query: 535 DIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELVNSL 590
D+ +I V+N+++ D ++HRIGRT RAG K G A + + + R + NS+
Sbjct: 310 DVDNITLVINYNLPEDPRNYIHRIGRTARAG-KSGMAISFAVENDIRQLTNIENSI 364
>TIGR_CMR|SO_0897 [details] [associations]
symbol:SO_0897 "ATP-dependent RNA helicase DbpA"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268809 KO:K05591
OMA:HIDPARF ProtClustDB:PRK11776 InterPro:IPR005580 Pfam:PF03880
HSSP:P10081 RefSeq:NP_716527.1 ProteinModelPortal:Q8EIE5
GeneID:1168744 KEGG:son:SO_0897 PATRIC:23521451 Uniprot:Q8EIE5
Length = 458
Score = 634 (228.2 bits), Expect = 4.8e-62, P = 4.8e-62
Identities = 141/354 (39%), Positives = 210/354 (59%)
Query: 227 FEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVH 286
F T+L+ +S GY + T IQ Q+LP IL+G D+IG KTGSGKTAAF L ++
Sbjct: 3 FSTLKLKTELLENLSSMGYNEMTPIQAQSLPAILAGEDVIGQGKTGSGKTAAFGLGLL-- 60
Query: 287 IMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKS-HGIRVSAVYGGMSKLDQFKEL 345
++ ++++ V+C PTRELA Q+ E + A+ H ++V + GG+ Q L
Sbjct: 61 --NKLDVKRFRIQTLVLC-PTRELADQVAQEIRTLARGIHNVKVLTLCGGVPMGPQIGSL 117
Query: 346 KAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQ 405
+ G I++ TPGR++D L L +S + LVLDEADRM ++GF+PQ+ +I+ Q +RQ
Sbjct: 118 EHGAHIIVGTPGRIVDHLDRNRLDLSNLNMLVLDEADRMLEMGFQPQLDAIIEQSPRERQ 177
Query: 406 TLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEKLP 465
TLLFSAT P +++ +A++I+ +PV V N I Q + + D ++ L+ L
Sbjct: 178 TLLFSATFPEQIQSIAKQIMYNPVMVKAAVTHEKNT-IEQHFYQLDDDKSRMQ-ALQLLL 235
Query: 466 GMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLI 525
+VF + K ++ +L GF ALHGD +Q R E L +F + VL+
Sbjct: 236 LEHKPESAVVFCNTKRETQKVADELEGLGFSVLALHGDLEQRDRDETLLQFANKSACVLV 295
Query: 526 ATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKE 579
ATDVAARGLDI ++ +V N+ +A D ++H+HRIGRTGRAG K G AYT ++
Sbjct: 296 ATDVAARGLDIDALDAVFNYHVAYDTEVHIHRIGRTGRAGSK-GAAYTFYNDQD 348
>TIGR_CMR|SO_1501 [details] [associations]
symbol:SO_1501 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 HOGENOM:HOG000268807
OMA:GGANMNP RefSeq:NP_717118.1 ProteinModelPortal:Q8EGU0
GeneID:1169311 KEGG:son:SO_1501 PATRIC:23522644
ProtClustDB:CLSK906294 Uniprot:Q8EGU0
Length = 456
Score = 634 (228.2 bits), Expect = 4.8e-62, P = 4.8e-62
Identities = 147/376 (39%), Positives = 226/376 (60%)
Query: 227 FEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVH 286
F+ G S+ L++AI++ GY++ T +Q Q +P+ L G+DI+ A+TG+GKTAAF LP++
Sbjct: 3 FDTLGLSSPLLNAITECGYQQLTQVQQQVIPLALVGKDIMACAQTGTGKTAAFALPVLEQ 62
Query: 287 IMDQPELQKEEGPI--GVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKE 344
+ +P + P+ ++ PTRELA Q+ +K+++ ++ AVYGG + Q K
Sbjct: 63 LAAKPA----DKPLLRALVMTPTRELAIQVCANIQKYSQFLPLKTLAVYGGANMNPQRKG 118
Query: 345 LKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDR 404
++ G +I++ATPGRL D++ L +S VT LV+DEADRM DLGF I + I P
Sbjct: 119 VEQGVDILVATPGRLFDIIGQFNLDLSSVTTLVIDEADRMLDLGFVRDIEKVKRLIAPVH 178
Query: 405 QTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEKL 464
QT+LFSAT V++L+ ++L+ P V V E A+ + Q+V+ + D + LL +L
Sbjct: 179 QTMLFSATYSDAVKQLSHKMLNQPQWVNVAENTTAST-VEQLVYRV--DKRRKAELLSEL 235
Query: 465 PGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVL 524
G + VLVFAS K + + +L G A HGDK Q +R +L FK+G VL
Sbjct: 236 VGRNNWRQVLVFASTKECAEHLLQELTLDGISAGVFHGDKTQGARNRVLDDFKAGKLRVL 295
Query: 525 IATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAG 584
+ATDVAARGLDI+++ V+N ++ + +VHRIGRTGRAG G A + V+ +
Sbjct: 296 VATDVAARGLDIQALPLVINLELPFLAEDYVHRIGRTGRAG-LSGRAISFVSPADDEMLA 354
Query: 585 ELVNSLIAAGQNVSME 600
E + +LI V+++
Sbjct: 355 E-IEALIGEKLPVTVQ 369
>DICTYBASE|DDB_G0274325 [details] [associations]
symbol:ddx52 "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0016887 "ATPase activity" evidence=ISS] [GO:0006200 "ATP
catabolic process" evidence=ISS] [GO:0042254 "ribosome biogenesis"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0006364 "rRNA processing" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0274325 GO:GO:0005524
GO:GO:0005730 GenomeReviews:CM000151_GR GO:GO:0016887 GO:GO:0003723
EMBL:AAFI02000012 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HSSP:P10081 KO:K14779 RefSeq:XP_643949.1
ProteinModelPortal:Q86IZ9 EnsemblProtists:DDB0234211 GeneID:8619377
KEGG:ddi:DDB_G0274325 OMA:NGITSHE Uniprot:Q86IZ9
Length = 668
Score = 609 (219.4 bits), Expect = 6.1e-62, Sum P(2) = 6.1e-62
Identities = 135/412 (32%), Positives = 235/412 (57%)
Query: 201 EQDVMEYKKSLAIRVSGFDVPRPVKTFEDCG--FSTQ--LMHAISKQGYEKPTSIQCQAL 256
++++ ++ I+V G D+P P+ F F + L++ I++ GY++P+ IQ Q +
Sbjct: 171 KREIATFRNKHRIKVDGTDIPDPMTEFSQLENRFKVRKYLLNNINEIGYKEPSPIQMQVI 230
Query: 257 PIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYL 316
PI+L R+++ IA TGSGKTA+F +P I+ + +P K+EG VI APTRELA QIY
Sbjct: 231 PILLKEREVVAIAPTGSGKTASFSIP-ILQALYEP---KKEGFRSVIIAPTRELAQQIYR 286
Query: 317 ETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYL 376
+ +K R+ + + + L +I+I TP RL+ ++K L++++V YL
Sbjct: 287 NFRLLSKGKPFRICVLSKNLHNQSTNENLIKNYDILITTPLRLVYLIKENLLSLNKVEYL 346
Query: 377 VLDEADRMFDLGFEPQIRSIVGQIR-PDRQTLLFSATMPRKVEKLAREILSDPVRVTVGE 435
V DEAD++FD F+ Q+ +V + P + LFSATM ++VE+L I+ +P+++ +GE
Sbjct: 347 VFDEADKLFDKNFQEQVDIVVTACQNPKLKICLFSATMNQQVEELGHSIMKNPIKIIIGE 406
Query: 436 VGMANEDITQVVHVIPSDAEKLPWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGF 495
A + Q + + + KL + + + ++ +L+F K ++ +L G
Sbjct: 407 QNAAAITVDQKLIYVGKEEGKLLAVRQLIQKGLEP-PILIFTQSKERAHDLFQELIFDGI 465
Query: 496 KAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVNFDIARDMDMHV 555
+H ++ Q R I++KF+ G VLI T++ ARG+D K + V+NFD + ++
Sbjct: 466 NVDVIHSERTQFQRDTIVKKFRMGKIWVLICTELMARGMDFKGVNFVINFDFPHTLASYI 525
Query: 556 HRIGRTGRAGDKDGTAYTLVTQKEARFAGELVNSLIAAGQNVSMELMDLAMK 607
HRIGRTGRAG + G AYTL T + +V+++ +G +V +++L ++
Sbjct: 526 HRIGRTGRAG-RPGVAYTLYTDADTPMLPTIVHAMKQSGSHVPDWMLNLKVQ 576
Score = 42 (19.8 bits), Expect = 6.1e-62, Sum P(2) = 6.1e-62
Identities = 13/38 (34%), Positives = 20/38 (52%)
Query: 41 DNYEDTDLDNIDYEDNDAAKAA----NDTGNGAEKEEI 74
DN +D D D+ D E+N+ K + N E+E+I
Sbjct: 92 DNDDDDDDDDED-EENEEPKEKEFIKHQVNNDEEEEDI 128
Score = 37 (18.1 bits), Expect = 2.0e-61, Sum P(2) = 2.0e-61
Identities = 10/45 (22%), Positives = 19/45 (42%)
Query: 30 LYVPPSSRYSHDNYEDTDLDNIDYEDNDAAKAANDTGNGAEKEEI 74
L+ + + D+ +D+D + N K + +T K EI
Sbjct: 130 LFNKSNENENSDDSDDSDDSGKNKNKNKNKKVSKETQEDKHKREI 174
>UNIPROTKB|A4QYM6 [details] [associations]
symbol:DRS1 "ATP-dependent RNA helicase DRS1"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
EMBL:CM001233 GO:GO:0042254 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 KO:K13181 RefSeq:XP_003712922.1
ProteinModelPortal:A4QYM6 STRING:A4QYM6 GeneID:2683645
KEGG:mgr:MGG_07718 OrthoDB:EOG4B01XM Uniprot:A4QYM6
Length = 790
Score = 632 (227.5 bits), Expect = 7.9e-62, P = 7.9e-62
Identities = 183/570 (32%), Positives = 278/570 (48%)
Query: 44 EDTDLDNIDYED--NDAAKAANDTGNGAEKEEI-DPLDAFMEGIHXXXXXXXXXXXXXXX 100
ED D DN ++E D AK A GNG + +EI EG
Sbjct: 99 EDLD-DNPEFEGWGFDGAKKAMGQGNGVDLDEIIRRRREKKEGGTKGAAEPEAKAEEEGE 157
Query: 101 XXXXDDDEEDPMESFLMAKKDVGLTLAADALRAGYDSDEEVYAAAKAVDAGMLDYDSDDN 160
DDD+++ ++A+ G+ +D + S+ + + A + G DSDD
Sbjct: 158 ALGLDDDDDE-----VLARDAFGMGAGSDDEDSAEASEGQDGSEASEGEEG----DSDDE 208
Query: 161 PVVVEKKKIEPIPALDHSLIDYEPFNKDFYQDSASISGMSEQDVMEYKKSLAIRVSGFDV 220
V P+P H P D Q+S S E++ + K+ A D
Sbjct: 209 SVA------SPVP---H------P---DDDQESESEQDEDEEEAAKMKEFFAADEPKSDT 250
Query: 221 PRPVKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFV 280
+ +F+ S ++ ++ G+ KPT IQ + +PI L G+D++G A TGSGKTAAFV
Sbjct: 251 NKGNASFQSMSLSRPILRGLTSVGFAKPTPIQSKTIPIALMGKDVVGGAVTGSGKTAAFV 310
Query: 281 LPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLD 340
+P++ ++ +P+ K VI APTRELA Q + K A I+ GG+S
Sbjct: 311 VPILERLLYRPK--KVPTSRVVILAPTRELAIQCHAVATKLASHTDIKFCLAVGGLSLKV 368
Query: 341 QFKELKAGCEIVIATPGRLIDMLKMKA-LTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQ 399
Q EL+ +++IATPGR ID ++ A + V LVLDEADRM + GF ++ I+
Sbjct: 369 QESELRLRPDVIIATPGRFIDHMRNSASFAVDTVEILVLDEADRMLEDGFADELNEILTT 428
Query: 400 IRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQ-VVHVIPSDAEKLP 458
+ RQT+LFSATM V+ L R L+ PVR+ V +TQ V + P EK
Sbjct: 429 LPKSRQTMLFSATMTSSVDNLIRVGLNKPVRLMVDSQKKTVVTLTQEFVRLRPGREEKRM 488
Query: 459 WLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKS 518
L L + V++F +K G A LHG Q R++ ++ F+
Sbjct: 489 GYLVYLCKNLYTERVIIFFRQKKIAHHARIIFGLLGLSCAELHGSMSQIQRIQSVEAFRD 548
Query: 519 GVYHVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQK 578
G L+ATD+A+RGLDIK + +V+N++ + ++++VHR+GRT RAG + GTA TL +
Sbjct: 549 GKVSFLLATDLASRGLDIKGVDTVINYEAPQSLEIYVHRVGRTARAG-RSGTAITLAAEP 607
Query: 579 EARFAGELVNSLIAAGQNVSMELMDLAMKD 608
+ + V + A G +S ++D A D
Sbjct: 608 DRKVVKAAVKAGKAQGAKISSRIIDAADAD 637
>UNIPROTKB|Q485I3 [details] [associations]
symbol:dbpA "ATP-dependent RNA helicase DbpA"
species:167879 "Colwellia psychrerythraea 34H" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268809 KO:K05591 ProtClustDB:PRK11776
InterPro:IPR005580 Pfam:PF03880 RefSeq:YP_268282.1
ProteinModelPortal:Q485I3 STRING:Q485I3 GeneID:3521612
KEGG:cps:CPS_1540 PATRIC:21466289 OMA:THEKSTI
BioCyc:CPSY167879:GI48-1621-MONOMER Uniprot:Q485I3
Length = 468
Score = 632 (227.5 bits), Expect = 7.9e-62, P = 7.9e-62
Identities = 148/368 (40%), Positives = 215/368 (58%)
Query: 227 FEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVH 286
F L+ +S GYE+ T IQ + LP +L G+D+IG AKTGSGKTAAF L ++
Sbjct: 12 FSSLSLKQDLVKNLSSLGYEQMTPIQAKTLPELLKGKDVIGEAKTGSGKTAAFGLALL-- 69
Query: 287 IMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKS-HGIRVSAVYGGMSKLDQFKEL 345
++ E++K VIC PTRELA Q+ E +K A+ H I++ + GG Q L
Sbjct: 70 --NKLEVKKFRIQSMVIC-PTRELADQVAKELRKLARGIHNIKILTLCGGTPFGPQIGSL 126
Query: 346 KAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQ 405
+ G +++ TPGRL + + L + + LVLDEADRM ++GF+ + +IVG+ DRQ
Sbjct: 127 EHGAHVIVGTPGRLEEHVIKGTLQLDNLNLLVLDEADRMLEMGFQAALDNIVGRTPLDRQ 186
Query: 406 TLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWL-LEKL 464
TLLFSAT P +++ ++ I++DPV V + I+Q + +D ++L L L L
Sbjct: 187 TLLFSATFPDQIKSISESIMTDPVMVKIAS-SEDQSTISQKFFKVGNDDDRLDALRLLLL 245
Query: 465 PGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVL 524
++ +F + K ++ L GF ALHGD +Q R + L +F + +L
Sbjct: 246 GNQVES--TAIFCNTKKETQQVADALHFDGFSVLALHGDLEQRDRDQTLLRFANKSASIL 303
Query: 525 IATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAG 584
+ATDVAARGLDI S+ V+N+ IARD ++HVHRIGRTGRAG G AY+L + KE+ G
Sbjct: 304 VATDVAARGLDIDSLDLVINYHIARDSEVHVHRIGRTGRAGST-GIAYSLFSDKESYKVG 362
Query: 585 ELVNSLIA 592
L + L A
Sbjct: 363 LLEDYLEA 370
>UNIPROTKB|Q81QF0 [details] [associations]
symbol:BAS2301 "ATP-dependent RNA helicase, DEAD/DEAH box
family" species:1392 "Bacillus anthracis" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:AE016879 EMBL:AE017334
EMBL:AE017225 GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HSSP:Q58083 HOGENOM:HOG000268807 RefSeq:NP_844851.1
RefSeq:YP_019115.1 RefSeq:YP_028562.1 ProteinModelPortal:Q81QF0
DNASU:1085525 EnsemblBacteria:EBBACT00000011128
EnsemblBacteria:EBBACT00000014583 EnsemblBacteria:EBBACT00000019769
GeneID:1085525 GeneID:2816610 GeneID:2853183 KEGG:ban:BA_2475
KEGG:bar:GBAA_2475 KEGG:bat:BAS2301 OMA:DNKGRPG
ProtClustDB:CLSK916648 BioCyc:BANT260799:GJAJ-2367-MONOMER
BioCyc:BANT261594:GJ7F-2455-MONOMER Uniprot:Q81QF0
Length = 450
Score = 632 (227.5 bits), Expect = 7.9e-62, P = 7.9e-62
Identities = 147/378 (38%), Positives = 214/378 (56%)
Query: 224 VKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPM 283
+K F + G S H + + G + T IQ +A+P+ILSG+DIIG AKTG+GKT AFVLP+
Sbjct: 4 LKNFLELGISETFNHTLRENGITEATPIQEKAIPVILSGKDIIGQAKTGTGKTLAFVLPI 63
Query: 284 IVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKF-AKSHGIRVSAVYGGMSKLDQF 342
+ I PE + +I APTRELA QI E KK + I V A+YGG Q
Sbjct: 64 LEKI--DPESSDVQA---LIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQL 118
Query: 343 KELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRP 402
++LK IV+ATPGRL+D ++ + + +S ++ +VLDEAD+M GF I I+ +
Sbjct: 119 RKLKGNTHIVVATPGRLLDHIRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDETPG 178
Query: 403 DRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLE 462
+QT+LFSAT+P+ ++KLA+ + +P + V + + I Q V + +D K P L
Sbjct: 179 SKQTMLFSATIPKDIKKLAKRYMDEPQMIQVQSEEVTVDTIEQRV-IETTDRAK-PDALR 236
Query: 463 KLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYH 522
+ ++F K ++ L G+ A LHGD QA R +++ F+
Sbjct: 237 FVMDRDQPFLAVIFCRTKVRASKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQ 296
Query: 523 VLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARF 582
LIATDVAARGLD+ + V N+DI D++ ++HRIGRTGRAG G A T V K+ +
Sbjct: 297 YLIATDVAARGLDVDGVTHVFNYDIPEDVESYIHRIGRTGRAGGS-GLAITFVAAKDEKH 355
Query: 583 AGELVNSLIAAGQNVSME 600
E+ +L A Q +E
Sbjct: 356 LEEIEKTLGAPIQREIIE 373
>TIGR_CMR|BA_2475 [details] [associations]
symbol:BA_2475 "ATP-dependent RNA helicase, DEAD/DEAH box
family" species:198094 "Bacillus anthracis str. Ames" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:AE016879 EMBL:AE017334
EMBL:AE017225 GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HSSP:Q58083 HOGENOM:HOG000268807 RefSeq:NP_844851.1
RefSeq:YP_019115.1 RefSeq:YP_028562.1 ProteinModelPortal:Q81QF0
DNASU:1085525 EnsemblBacteria:EBBACT00000011128
EnsemblBacteria:EBBACT00000014583 EnsemblBacteria:EBBACT00000019769
GeneID:1085525 GeneID:2816610 GeneID:2853183 KEGG:ban:BA_2475
KEGG:bar:GBAA_2475 KEGG:bat:BAS2301 OMA:DNKGRPG
ProtClustDB:CLSK916648 BioCyc:BANT260799:GJAJ-2367-MONOMER
BioCyc:BANT261594:GJ7F-2455-MONOMER Uniprot:Q81QF0
Length = 450
Score = 632 (227.5 bits), Expect = 7.9e-62, P = 7.9e-62
Identities = 147/378 (38%), Positives = 214/378 (56%)
Query: 224 VKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPM 283
+K F + G S H + + G + T IQ +A+P+ILSG+DIIG AKTG+GKT AFVLP+
Sbjct: 4 LKNFLELGISETFNHTLRENGITEATPIQEKAIPVILSGKDIIGQAKTGTGKTLAFVLPI 63
Query: 284 IVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKF-AKSHGIRVSAVYGGMSKLDQF 342
+ I PE + +I APTRELA QI E KK + I V A+YGG Q
Sbjct: 64 LEKI--DPESSDVQA---LIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQL 118
Query: 343 KELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRP 402
++LK IV+ATPGRL+D ++ + + +S ++ +VLDEAD+M GF I I+ +
Sbjct: 119 RKLKGNTHIVVATPGRLLDHIRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDETPG 178
Query: 403 DRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLE 462
+QT+LFSAT+P+ ++KLA+ + +P + V + + I Q V + +D K P L
Sbjct: 179 SKQTMLFSATIPKDIKKLAKRYMDEPQMIQVQSEEVTVDTIEQRV-IETTDRAK-PDALR 236
Query: 463 KLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYH 522
+ ++F K ++ L G+ A LHGD QA R +++ F+
Sbjct: 237 FVMDRDQPFLAVIFCRTKVRASKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQ 296
Query: 523 VLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARF 582
LIATDVAARGLD+ + V N+DI D++ ++HRIGRTGRAG G A T V K+ +
Sbjct: 297 YLIATDVAARGLDVDGVTHVFNYDIPEDVESYIHRIGRTGRAGGS-GLAITFVAAKDEKH 355
Query: 583 AGELVNSLIAAGQNVSME 600
E+ +L A Q +E
Sbjct: 356 LEEIEKTLGAPIQREIIE 373
>TIGR_CMR|CPS_1540 [details] [associations]
symbol:CPS_1540 "ATP-dependent RNA helicase DbpA"
species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0008150
"biological_process" evidence=ND] [GO:0008186 "RNA-dependent ATPase
activity" evidence=ISS] [GO:0019843 "rRNA binding" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:CP000083
GenomeReviews:CP000083_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268809 KO:K05591 ProtClustDB:PRK11776
InterPro:IPR005580 Pfam:PF03880 RefSeq:YP_268282.1
ProteinModelPortal:Q485I3 STRING:Q485I3 GeneID:3521612
KEGG:cps:CPS_1540 PATRIC:21466289 OMA:THEKSTI
BioCyc:CPSY167879:GI48-1621-MONOMER Uniprot:Q485I3
Length = 468
Score = 632 (227.5 bits), Expect = 7.9e-62, P = 7.9e-62
Identities = 148/368 (40%), Positives = 215/368 (58%)
Query: 227 FEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVH 286
F L+ +S GYE+ T IQ + LP +L G+D+IG AKTGSGKTAAF L ++
Sbjct: 12 FSSLSLKQDLVKNLSSLGYEQMTPIQAKTLPELLKGKDVIGEAKTGSGKTAAFGLALL-- 69
Query: 287 IMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKS-HGIRVSAVYGGMSKLDQFKEL 345
++ E++K VIC PTRELA Q+ E +K A+ H I++ + GG Q L
Sbjct: 70 --NKLEVKKFRIQSMVIC-PTRELADQVAKELRKLARGIHNIKILTLCGGTPFGPQIGSL 126
Query: 346 KAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQ 405
+ G +++ TPGRL + + L + + LVLDEADRM ++GF+ + +IVG+ DRQ
Sbjct: 127 EHGAHVIVGTPGRLEEHVIKGTLQLDNLNLLVLDEADRMLEMGFQAALDNIVGRTPLDRQ 186
Query: 406 TLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWL-LEKL 464
TLLFSAT P +++ ++ I++DPV V + I+Q + +D ++L L L L
Sbjct: 187 TLLFSATFPDQIKSISESIMTDPVMVKIAS-SEDQSTISQKFFKVGNDDDRLDALRLLLL 245
Query: 465 PGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVL 524
++ +F + K ++ L GF ALHGD +Q R + L +F + +L
Sbjct: 246 GNQVES--TAIFCNTKKETQQVADALHFDGFSVLALHGDLEQRDRDQTLLRFANKSASIL 303
Query: 525 IATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAG 584
+ATDVAARGLDI S+ V+N+ IARD ++HVHRIGRTGRAG G AY+L + KE+ G
Sbjct: 304 VATDVAARGLDIDSLDLVINYHIARDSEVHVHRIGRTGRAGST-GIAYSLFSDKESYKVG 362
Query: 585 ELVNSLIA 592
L + L A
Sbjct: 363 LLEDYLEA 370
>DICTYBASE|DDB_G0281711 [details] [associations]
symbol:ddx27 "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0042254 "ribosome biogenesis" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
dictyBase:DDB_G0281711 GO:GO:0005524 GO:GO:0005634
GenomeReviews:CM000152_GR GO:GO:0042254 GO:GO:0003723
EMBL:AAFI02000042 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K13181 RefSeq:XP_640597.1 HSSP:Q5STU4 ProteinModelPortal:Q54TJ4
STRING:Q54TJ4 EnsemblProtists:DDB0234201 GeneID:8623207
KEGG:ddi:DDB_G0281711 OMA:SEYRAIR Uniprot:Q54TJ4
Length = 783
Score = 609 (219.4 bits), Expect = 1.3e-61, Sum P(2) = 1.3e-61
Identities = 147/436 (33%), Positives = 237/436 (54%)
Query: 156 DSDDNPVVVEKKKIEPIPALDHSLIDYEPFNKDFYQDSASISGMSEQDVMEYKKSLAIRV 215
D+DD+ V +++ E D+ + + NK Q + + + + + ++
Sbjct: 126 DNDDDDEEVNEEEEEEEEEEDNE--NEKEINKKQQQQQQQSNKQTTDKIKVLQSNRKLKK 183
Query: 216 SGFDVPRPVKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGK 275
V + TFE+ S L+ A+ K G+ +PT IQ +A+P+ L+G+DI+ A TGSGK
Sbjct: 184 I---VEEELPTFEELHLSRPLLKAVQKLGFSQPTPIQAKAIPLALNGKDILASASTGSGK 240
Query: 276 TAAFVLPMIVHIMDQPELQKEEGPIGV-ICAPTRELAHQIYLETKKFAKSHGIRVSAVYG 334
TAAF+LP++ ++ + E I V I PTRELA Q + A+ I + G
Sbjct: 241 TAAFLLPVLERLLFR---DSEYRAIRVLILLPTRELALQCQSVMENLAQFSNITSCLIVG 297
Query: 335 GMSKLDQFKELKAGCEIVIATPGRLID-MLKMKALTMSRVTYLVLDEADRMFDLGFEPQI 393
G+S Q EL+ ++VIATPGRLID +L + + + L+LDEADR+ D+GF+ +I
Sbjct: 298 GLSNKAQEVELRKSPDVVIATPGRLIDHLLNAHGIGLDDLEILILDEADRLLDMGFKDEI 357
Query: 394 RSIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQ-VVHVIPS 452
IV +RQT+LFSAT+ +V+ LA+ L P+RV V + + Q V + P
Sbjct: 358 NKIVESCPTNRQTMLFSATLNDEVKTLAKLSLQQPIRVQVDALMQVTSTLEQEFVKIKPQ 417
Query: 453 DAEKLPWLLEKL-PGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRME 511
P +L L + + G ++F K V + KAA LHG+ Q R +
Sbjct: 418 HLSDRPAILLSLCTRVFNQGGTIIFCRSKKEVHRLRIIFGLSDLKAAELHGNLSQEQRFD 477
Query: 512 ILQKFKSGVYHVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTA 571
LQ+F+ G + L+A+DVA+RGLDI +K+V+N+++ +M ++HR+GRT RAG DG +
Sbjct: 478 SLQQFRDGQVNYLLASDVASRGLDIIGVKTVINYNMPNNMANYIHRVGRTARAG-MDGKS 536
Query: 572 YTLVTQKEARFAGELV 587
+ +T + + ++V
Sbjct: 537 CSFITDNDRKLLKDIV 552
Score = 39 (18.8 bits), Expect = 1.3e-61, Sum P(2) = 1.3e-61
Identities = 7/17 (41%), Positives = 10/17 (58%)
Query: 105 DDDEEDPMESFLMAKKD 121
+DD+ED E F + D
Sbjct: 43 NDDDEDLKEDFFFEESD 59
Score = 37 (18.1 bits), Expect = 2.0e-61, Sum P(2) = 2.0e-61
Identities = 6/21 (28%), Positives = 14/21 (66%)
Query: 55 DNDAAKAANDTGNGAEKEEID 75
+N+ +K +N+ N + EE++
Sbjct: 115 NNNKSKKSNNNDNDDDDEEVN 135
>UNIPROTKB|Q8EI96 [details] [associations]
symbol:srmB "ATP-dependent RNA helicase SrmB"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 OMA:PLAMDQR
HOGENOM:HOG000268807 KO:K05590 ProtClustDB:PRK11192
RefSeq:NP_716576.1 ProteinModelPortal:Q8EI96 GeneID:1168793
KEGG:son:SO_0947 PATRIC:23521551 Uniprot:Q8EI96
Length = 420
Score = 630 (226.8 bits), Expect = 1.3e-61, P = 1.3e-61
Identities = 137/361 (37%), Positives = 202/361 (55%)
Query: 227 FEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVH 286
FED L+ ++ G+ PT+IQ + LP L RDI+ A TG+GKTA+F+LP + H
Sbjct: 3 FEDFQLDPSLLESLKAMGHLSPTTIQQETLPHALEQRDILARAPTGTGKTASFLLPALQH 62
Query: 287 IMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELK 346
++D P + + +I PTRELA QI+ A G+ ++ + GG+ Q + LK
Sbjct: 63 LIDFPRRYSGQARV-LILTPTRELASQIHRYACHLATDQGLNIAIITGGVPYAPQEEALK 121
Query: 347 AGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQT 406
+I++ATPGRL++ L + V L++DEADRM D+GF +++I + + +Q
Sbjct: 122 GNIDILVATPGRLMEYLDKGKFSAESVDILIIDEADRMLDMGFSAVVKAIALEAQGRKQN 181
Query: 407 LLFSATMPRK-VEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEKLP 465
+LFSAT+ V + ARE+L+DP+ + V I Q +H+ K L L
Sbjct: 182 MLFSATLEGSGVIRFAREVLNDPIEIDVDAPRKEKAKIHQWIHLADDKDHKFALLCHLLK 241
Query: 466 GMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLI 525
D +VF + V +E QL Q G A + GD +Q R + L +F G +VL+
Sbjct: 242 -QEDVKRAIVFVKTRDVVSSLEGQLLQAGIPCAFMRGDMEQKKRFQALSRFTKGEVNVLL 300
Query: 526 ATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGE 585
ATDVAARG+DI I V+NFD+ R D ++HRIGRTGRAG K GTA +L + R G+
Sbjct: 301 ATDVAARGIDIDDISHVINFDMPRSADTYIHRIGRTGRAGAK-GTAISLAEAHDMRIVGK 359
Query: 586 L 586
+
Sbjct: 360 I 360
>TIGR_CMR|SO_0947 [details] [associations]
symbol:SO_0947 "ATP-dependent RNA helicase SrmB"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 OMA:PLAMDQR
HOGENOM:HOG000268807 KO:K05590 ProtClustDB:PRK11192
RefSeq:NP_716576.1 ProteinModelPortal:Q8EI96 GeneID:1168793
KEGG:son:SO_0947 PATRIC:23521551 Uniprot:Q8EI96
Length = 420
Score = 630 (226.8 bits), Expect = 1.3e-61, P = 1.3e-61
Identities = 137/361 (37%), Positives = 202/361 (55%)
Query: 227 FEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVH 286
FED L+ ++ G+ PT+IQ + LP L RDI+ A TG+GKTA+F+LP + H
Sbjct: 3 FEDFQLDPSLLESLKAMGHLSPTTIQQETLPHALEQRDILARAPTGTGKTASFLLPALQH 62
Query: 287 IMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELK 346
++D P + + +I PTRELA QI+ A G+ ++ + GG+ Q + LK
Sbjct: 63 LIDFPRRYSGQARV-LILTPTRELASQIHRYACHLATDQGLNIAIITGGVPYAPQEEALK 121
Query: 347 AGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQT 406
+I++ATPGRL++ L + V L++DEADRM D+GF +++I + + +Q
Sbjct: 122 GNIDILVATPGRLMEYLDKGKFSAESVDILIIDEADRMLDMGFSAVVKAIALEAQGRKQN 181
Query: 407 LLFSATMPRK-VEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEKLP 465
+LFSAT+ V + ARE+L+DP+ + V I Q +H+ K L L
Sbjct: 182 MLFSATLEGSGVIRFAREVLNDPIEIDVDAPRKEKAKIHQWIHLADDKDHKFALLCHLLK 241
Query: 466 GMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLI 525
D +VF + V +E QL Q G A + GD +Q R + L +F G +VL+
Sbjct: 242 -QEDVKRAIVFVKTRDVVSSLEGQLLQAGIPCAFMRGDMEQKKRFQALSRFTKGEVNVLL 300
Query: 526 ATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGE 585
ATDVAARG+DI I V+NFD+ R D ++HRIGRTGRAG K GTA +L + R G+
Sbjct: 301 ATDVAARGIDIDDISHVINFDMPRSADTYIHRIGRTGRAGAK-GTAISLAEAHDMRIVGK 359
Query: 586 L 586
+
Sbjct: 360 I 360
>TAIR|locus:2075034 [details] [associations]
symbol:AT3G09720 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0009220
"pyrimidine ribonucleotide biosynthetic process" evidence=RCA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0003723 EMBL:AC016661
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000242486 KO:K14779 OMA:NVMKQSG EMBL:BT005833
EMBL:AK227326 IPI:IPI00542757 RefSeq:NP_187583.2 UniGene:At.40050
ProteinModelPortal:Q84TG1 SMR:Q84TG1 STRING:Q84TG1 PaxDb:Q84TG1
PRIDE:Q84TG1 EnsemblPlants:AT3G09720.1 GeneID:820129
KEGG:ath:AT3G09720 KEGG:dosa:Os07t0647900-01 GeneFarm:1036
TAIR:At3g09720 InParanoid:Q84TG1 PhylomeDB:Q84TG1
ProtClustDB:CLSN2690529 Genevestigator:Q84TG1 GermOnline:AT3G09720
Uniprot:Q84TG1
Length = 541
Score = 629 (226.5 bits), Expect = 1.6e-61, P = 1.6e-61
Identities = 148/415 (35%), Positives = 230/415 (55%)
Query: 201 EQDVMEYKKSLAIRVSGFDVPRPVKTFEDC----GFSTQLMHAISKQGYEKPTSIQCQAL 256
E+D + +K +I VSG ++P P+K+F + G ++ +++ G+++PT IQ QA+
Sbjct: 114 ERDALS-RKQYSIHVSGNNIPPPLKSFAELSSRYGCEGYILRNLAELGFKEPTPIQRQAI 172
Query: 257 PIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYL 316
PI+LSGR+ A TGSGKT AF+ PM++ + +P +G VI +P RELA Q
Sbjct: 173 PILLSGRECFACAPTGSGKTFAFICPMLIKLK-RPST---DGIRAVILSPARELAAQTAR 228
Query: 317 ETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYL 376
E KK K + + + K F +L C+++I+TP RL +K K + +S+V YL
Sbjct: 229 EGKKLIKGSNFHIRLMTKPLVKTADFSKL--WCDVLISTPMRLKRAIKAKKIDLSKVEYL 286
Query: 377 VLDEADRMFDLGFEPQIRSIVGQI-RPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGE 435
VLDE+D++F+ QI +V P LFSAT+P VE+LAR I+ D VRV +G
Sbjct: 287 VLDESDKLFEQSLLKQIDCVVKACSNPSIIRSLFSATLPDSVEELARSIMHDAVRVIIGR 346
Query: 436 VGMANEDITQVVHVIPSDAEKLPWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGF 495
A+E + Q + S+ KL L + ++ VL+F K E+ +L +
Sbjct: 347 KNTASETVKQKLVFAGSEEGKLLALRQSFAESLNP-PVLIFVQSKERAKELYDELKCENI 405
Query: 496 KAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVNFDIARDMDMHV 555
+A +H D R + +F++G VLIATDV ARG+D K I V+N+D ++
Sbjct: 406 RAGVIHSDLPPGERENAVDQFRAGEKWVLIATDVIARGMDFKGINCVINYDFPDSASAYI 465
Query: 556 HRIGRTGRAGDKDGTAYTLVTQKEARFAGELVNSLIAAGQNVSMELMDLAMKDGR 610
HRIGR+GRAG + G A T T+++ F + N+++++G V +M L K R
Sbjct: 466 HRIGRSGRAG-RSGEAITFYTEQDVPFLRNIANTMMSSGCEVPSWIMSLKKKKWR 519
>UNIPROTKB|Q8EDC4 [details] [associations]
symbol:SO_2838 "ATP-dependent RNA helicase DEAD box family"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
ProtClustDB:CLSK869483 RefSeq:NP_718410.1 ProteinModelPortal:Q8EDC4
GeneID:1170534 KEGG:son:SO_2838 PATRIC:23525314 OMA:LAGHDIF
Uniprot:Q8EDC4
Length = 449
Score = 628 (226.1 bits), Expect = 2.1e-61, P = 2.1e-61
Identities = 136/355 (38%), Positives = 215/355 (60%)
Query: 227 FEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVH 286
F D +L+ ++ G PT+IQ QALPI L+G+D++ +KTGSGKT AF+LP +
Sbjct: 3 FTDFSLDQRLLQSLKHMGIATPTAIQEQALPIALAGKDLMASSKTGSGKTLAFLLPALQR 62
Query: 287 IMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELK 346
++ L K + P +I PTRELAHQ+Y + + + + +V GG + DQ K L
Sbjct: 63 VISTRALSKRD-PRVLILLPTRELAHQVYSQLRLLVANTQYKAISVLGGENFNDQAKALA 121
Query: 347 AGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSI-VGQIRPDRQ 405
++ATPGR+ D L+ K L ++ + L+LDEADRM DLGF PQ+++I RQ
Sbjct: 122 KEPHFIVATPGRIADHLEQKNLFLNGLELLILDEADRMLDLGFAPQLKAINEAADHKRRQ 181
Query: 406 TLLFSATMPR-KVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEKL 464
TL+FSAT+ ++ ++A +L +P+ V +G ++DI+Q +++ K LL +L
Sbjct: 182 TLMFSATLDHSEINEIAAALLKNPLHVAIGTAHAEHQDISQRIYLCDHLDHKEA-LLSRL 240
Query: 465 PGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVL 524
V++F + + + + ++L+ +GF AAL G+ QA+R +I+ +F G +L
Sbjct: 241 LSDESHKQVIIFTATRADTERLAAKLSAQGFATAALSGELKQAARNQIMDQFARGQQQIL 300
Query: 525 IATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKE 579
+ TDVA+RGLD+ ++ V+NFD+ + + +VHRIGRTGRAG K G A +LV K+
Sbjct: 301 VTTDVASRGLDLLNVSLVINFDMPKFAEEYVHRIGRTGRAGAK-GDAISLVGPKD 354
>UNIPROTKB|Q9KNA4 [details] [associations]
symbol:VC_A0061 "ATP-dependent RNA helicase, DEAD box
family" species:243277 "Vibrio cholerae O1 biovar El Tor str.
N16961" [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=ISS] [GO:0016070 "RNA metabolic process" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:AE003853
GenomeReviews:AE003853_GR GO:GO:0016070 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0004004 InterPro:IPR014014
PROSITE:PS51195 HSSP:P10081 OMA:PKFIVAT ProtClustDB:CLSK869483
PIR:C82506 RefSeq:NP_232462.1 ProteinModelPortal:Q9KNA4
DNASU:2612119 GeneID:2612119 KEGG:vch:VCA0061 PATRIC:20084709
Uniprot:Q9KNA4
Length = 452
Score = 628 (226.1 bits), Expect = 2.1e-61, P = 2.1e-61
Identities = 144/388 (37%), Positives = 229/388 (59%)
Query: 227 FEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVH 286
F+D G +L+ ++ +++ T IQ QA+P+ ++GRD++ +KTGSGKT AFVLPM+ H
Sbjct: 7 FKDLGLDNRLLKNLAHYNFKQATEIQQQAIPLTIAGRDLLASSKTGSGKTLAFVLPML-H 65
Query: 287 IMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELK 346
+ + + P G+I PTRELA Q+Y E + + + GG + DQ K L
Sbjct: 66 KSLKTKAFSAKDPRGLILVPTRELAKQVYGELRSMLGGLSYTATLITGGENFNDQVKALA 125
Query: 347 AGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDR-Q 405
G ++ATPGRL D L ++L + + LVLDEADRM DLGF ++R I + R Q
Sbjct: 126 RGPRFIVATPGRLADHLDHRSLFLEGLETLVLDEADRMLDLGFAKELRRIHNAAKHRRRQ 185
Query: 406 TLLFSATMPRK-VEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEKL 464
TL+FSAT+ V +A E+L++P R+ +G ++DITQ ++ K LL+++
Sbjct: 186 TLMFSATLDHADVNDMAMELLNEPKRIAIGVGSEEHKDITQHFYLCDHLDHKEA-LLDRI 244
Query: 465 PGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVL 524
+ V++F + + D + +L Q KA AL G+ +Q R I+ +F+ V+ +L
Sbjct: 245 LADAEYRQVIIFTATRADTDRLTEKLNQNNLKAVALSGNLNQTQRNTIMGQFERAVFKIL 304
Query: 525 IATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAG 584
+ TDVA+RGLDI ++ V+NFD+ + + +VHR+GRTGRAG+K G A +LV K+ +
Sbjct: 305 VTTDVASRGLDIPAVTHVINFDMPKHTEEYVHRVGRTGRAGNK-GDAMSLVGPKDWE-SF 362
Query: 585 ELVNSLIAAGQNVSMELMDLAMKDGRFR 612
+ V + + Q + E+ LA +G+F+
Sbjct: 363 KRVEAFLQ--QEIQFEV--LAGLEGKFK 386
WARNING: HSPs involving 760 database sequences were not reported due to the
limiting value of parameter B = 250.
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.315 0.132 0.371 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 787 713 0.00084 121 3 11 22 0.43 34
36 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 1010
No. of states in DFA: 610 (65 KB)
Total size of DFA: 309 KB (2158 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 60.49u 0.48s 60.97t Elapsed: 00:00:03
Total cpu time: 60.58u 0.49s 61.07t Elapsed: 00:00:03
Start: Fri May 10 05:14:54 2013 End: Fri May 10 05:14:57 2013
WARNINGS ISSUED: 2